Query 043288
Match_columns 156
No_of_seqs 145 out of 1277
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 03:24:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043288.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043288hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11597 heat shock chaperone 100.0 3.4E-30 7.3E-35 186.4 12.8 105 47-156 31-136 (142)
2 PRK10743 heat shock protein Ib 100.0 3.1E-29 6.8E-34 180.7 13.6 102 49-155 35-137 (137)
3 COG0071 IbpA Molecular chapero 100.0 8.4E-29 1.8E-33 180.5 14.5 109 46-155 38-146 (146)
4 cd06472 ACD_ScHsp26_like Alpha 100.0 1.8E-27 4E-32 160.7 12.3 92 50-141 1-92 (92)
5 PF00011 HSP20: Hsp20/alpha cr 99.9 1.3E-25 2.7E-30 153.9 14.0 101 52-155 1-102 (102)
6 cd06471 ACD_LpsHSP_like Group 99.9 2.6E-25 5.6E-30 150.3 12.0 91 49-141 1-93 (93)
7 cd06470 ACD_IbpA-B_like Alpha- 99.9 1.8E-24 3.9E-29 145.6 12.9 89 49-141 1-90 (90)
8 cd06497 ACD_alphaA-crystallin_ 99.9 2.1E-23 4.5E-28 139.3 11.4 82 52-141 4-86 (86)
9 cd06478 ACD_HspB4-5-6 Alpha-cr 99.9 9.2E-23 2E-27 135.4 11.2 82 52-141 1-83 (83)
10 cd06498 ACD_alphaB-crystallin_ 99.9 9.7E-23 2.1E-27 135.5 11.1 82 53-142 2-84 (84)
11 cd06479 ACD_HspB7_like Alpha c 99.9 8.4E-23 1.8E-27 134.8 9.5 79 52-141 2-81 (81)
12 cd06475 ACD_HspB1_like Alpha c 99.9 9.6E-22 2.1E-26 131.3 10.8 82 51-140 3-85 (86)
13 cd06476 ACD_HspB2_like Alpha c 99.9 1.4E-21 3E-26 129.7 11.1 81 53-141 2-83 (83)
14 cd06481 ACD_HspB9_like Alpha c 99.9 1.1E-21 2.3E-26 131.3 10.4 83 55-141 4-87 (87)
15 cd06464 ACD_sHsps-like Alpha-c 99.9 3.3E-21 7.1E-26 127.7 11.6 88 52-141 1-88 (88)
16 cd06482 ACD_HspB10 Alpha cryst 99.9 3.8E-21 8.3E-26 128.4 10.3 80 56-140 6-86 (87)
17 cd06477 ACD_HspB3_Like Alpha c 99.8 1.8E-20 3.8E-25 124.2 11.0 79 54-140 3-82 (83)
18 cd06526 metazoan_ACD Alpha-cry 99.8 1E-20 2.2E-25 125.4 9.2 77 57-141 6-83 (83)
19 KOG0710 Molecular chaperone (s 99.8 2.1E-19 4.5E-24 136.8 7.7 114 43-156 79-196 (196)
20 cd06480 ACD_HspB8_like Alpha-c 99.8 1.3E-17 2.7E-22 112.2 10.2 81 53-141 10-91 (91)
21 KOG3591 Alpha crystallins [Pos 99.7 5.5E-17 1.2E-21 121.0 13.7 99 49-155 63-162 (173)
22 cd00298 ACD_sHsps_p23-like Thi 99.6 2E-14 4.4E-19 92.0 10.0 80 53-141 1-80 (80)
23 cd06469 p23_DYX1C1_like p23_li 99.4 7.4E-12 1.6E-16 81.4 8.9 71 53-144 1-71 (78)
24 cd06463 p23_like Proteins cont 99.1 2.3E-09 4.9E-14 69.6 9.6 76 53-144 1-76 (84)
25 PF05455 GvpH: GvpH; InterPro 99.1 2.5E-09 5.5E-14 79.5 10.4 78 48-145 91-171 (177)
26 cd06466 p23_CS_SGT1_like p23_l 98.8 3.2E-08 7E-13 64.8 7.9 77 52-144 1-77 (84)
27 PF04969 CS: CS domain; Inter 98.6 2E-06 4.3E-11 55.1 11.5 77 49-141 1-79 (79)
28 cd06465 p23_hB-ind1_like p23_l 98.3 1.5E-05 3.1E-10 55.0 10.5 78 49-143 1-78 (108)
29 PF08190 PIH1: pre-RNA process 98.2 1.1E-05 2.3E-10 65.5 9.0 65 57-140 260-327 (328)
30 cd06489 p23_CS_hSgt1_like p23_ 98.2 2.6E-05 5.6E-10 51.2 8.8 77 52-144 1-77 (84)
31 cd06488 p23_melusin_like p23_l 98.0 0.00015 3.2E-09 48.1 9.8 79 50-144 2-80 (87)
32 cd06468 p23_CacyBP p23_like do 97.9 0.00028 6.1E-09 46.9 10.2 79 50-144 3-85 (92)
33 cd06467 p23_NUDC_like p23_like 97.8 0.00028 6.2E-09 46.0 9.0 74 52-144 2-77 (85)
34 cd06493 p23_NUDCD1_like p23_NU 97.7 0.00095 2.1E-08 43.9 9.5 74 52-144 2-77 (85)
35 cd00237 p23 p23 binds heat sho 97.5 0.003 6.4E-08 43.6 10.5 78 49-144 2-79 (106)
36 cd06494 p23_NUDCD2_like p23-li 97.3 0.006 1.3E-07 41.1 9.7 77 48-144 5-83 (93)
37 KOG1309 Suppressor of G2 allel 97.1 0.0029 6.3E-08 47.4 7.1 80 48-143 3-82 (196)
38 PLN03088 SGT1, suppressor of 97.1 0.0069 1.5E-07 50.0 10.1 81 48-144 156-236 (356)
39 cd06490 p23_NCB5OR p23_like do 96.5 0.089 1.9E-06 34.7 10.1 76 51-144 1-80 (87)
40 cd06492 p23_mNUDC_like p23-lik 95.8 0.13 2.9E-06 34.0 8.6 74 52-144 2-79 (87)
41 cd06495 p23_NUDCD3_like p23-li 94.1 1.3 2.7E-05 30.3 9.9 80 48-143 4-86 (102)
42 PF14913 DPCD: DPCD protein fa 93.4 0.82 1.8E-05 34.7 8.3 79 45-142 83-169 (194)
43 KOG3158 HSP90 co-chaperone p23 88.0 2.5 5.5E-05 31.6 6.4 78 48-143 7-84 (180)
44 cd06482 ACD_HspB10 Alpha cryst 85.8 2.2 4.8E-05 28.2 4.7 34 110-144 9-42 (87)
45 PF13349 DUF4097: Domain of un 84.7 12 0.00026 26.7 9.6 83 49-139 66-148 (166)
46 cd06470 ACD_IbpA-B_like Alpha- 82.3 7.7 0.00017 25.4 6.2 35 110-145 12-46 (90)
47 PF00011 HSP20: Hsp20/alpha cr 80.0 6.9 0.00015 25.8 5.4 37 58-95 55-92 (102)
48 cd06476 ACD_HspB2_like Alpha c 79.5 6.6 0.00014 25.5 5.0 33 110-143 8-40 (83)
49 COG5091 SGT1 Suppressor of G2 79.4 1.5 3.2E-05 35.4 2.2 84 46-144 174-257 (368)
50 KOG2265 Nuclear distribution p 78.6 24 0.00052 26.5 8.2 82 44-144 14-97 (179)
51 cd06477 ACD_HspB3_Like Alpha c 78.6 5.7 0.00012 25.9 4.5 33 110-143 8-40 (83)
52 cd06497 ACD_alphaA-crystallin_ 78.3 6.8 0.00015 25.6 4.9 32 110-142 11-42 (86)
53 cd06478 ACD_HspB4-5-6 Alpha-cr 77.1 8.2 0.00018 25.0 5.0 32 110-142 8-39 (83)
54 cd06479 ACD_HspB7_like Alpha c 76.7 7.4 0.00016 25.3 4.6 33 110-143 9-41 (81)
55 cd06471 ACD_LpsHSP_like Group 76.7 4.7 0.0001 26.4 3.8 30 58-88 62-91 (93)
56 cd06464 ACD_sHsps-like Alpha-c 76.2 5.5 0.00012 25.1 3.9 32 56-88 54-86 (88)
57 PRK10743 heat shock protein Ib 76.0 7.7 0.00017 27.8 5.0 32 111-143 47-78 (137)
58 cd06472 ACD_ScHsp26_like Alpha 75.0 5.5 0.00012 26.1 3.8 31 57-88 59-90 (92)
59 KOG1667 Zn2+-binding protein M 73.7 24 0.00052 28.3 7.4 84 47-145 213-296 (320)
60 cd06526 metazoan_ACD Alpha-cry 73.6 8.6 0.00019 24.6 4.3 34 110-144 8-41 (83)
61 cd06480 ACD_HspB8_like Alpha-c 73.0 8.9 0.00019 25.5 4.4 30 58-88 58-89 (91)
62 PF08308 PEGA: PEGA domain; I 72.6 17 0.00038 22.3 5.5 42 49-90 25-67 (71)
63 cd06475 ACD_HspB1_like Alpha c 72.4 12 0.00027 24.3 4.9 33 110-143 11-43 (86)
64 cd06481 ACD_HspB9_like Alpha c 72.2 11 0.00025 24.6 4.7 33 110-143 8-40 (87)
65 cd06498 ACD_alphaB-crystallin_ 70.4 14 0.0003 24.0 4.8 32 110-142 8-39 (84)
66 PRK11597 heat shock chaperone 68.6 14 0.0003 26.7 4.8 32 111-143 45-76 (142)
67 PF12992 DUF3876: Domain of un 68.5 21 0.00044 24.1 5.4 39 48-87 25-68 (95)
68 COG0071 IbpA Molecular chapero 68.1 19 0.00041 25.8 5.5 36 58-94 100-136 (146)
69 KOG3260 Calcyclin-binding prot 65.0 34 0.00075 26.0 6.4 78 51-144 77-155 (224)
70 PF04972 BON: BON domain; Int 64.6 14 0.0003 22.2 3.7 25 67-92 12-36 (64)
71 KOG3591 Alpha crystallins [Pos 64.2 15 0.00033 27.4 4.5 32 63-94 120-152 (173)
72 cd06469 p23_DYX1C1_like p23_li 63.5 28 0.0006 21.6 5.1 33 58-91 36-69 (78)
73 PF01954 DUF104: Protein of un 62.8 7.2 0.00016 24.0 2.1 17 124-140 3-19 (60)
74 PRK05518 rpl6p 50S ribosomal p 60.6 54 0.0012 24.6 6.9 46 70-140 12-57 (180)
75 TIGR03653 arch_L6P archaeal ri 59.2 65 0.0014 23.9 7.1 45 71-140 7-51 (170)
76 TIGR03654 L6_bact ribosomal pr 54.1 76 0.0017 23.6 6.8 44 71-140 11-54 (175)
77 PRK10568 periplasmic protein; 53.5 27 0.00058 26.6 4.3 25 67-92 73-97 (203)
78 cd06467 p23_NUDC_like p23_like 51.8 35 0.00077 21.4 4.2 30 111-140 10-39 (85)
79 PRK05498 rplF 50S ribosomal pr 50.4 84 0.0018 23.4 6.5 44 71-140 12-55 (178)
80 PF05455 GvpH: GvpH; InterPro 48.9 96 0.0021 23.4 6.5 40 55-95 133-172 (177)
81 PTZ00027 60S ribosomal protein 47.0 97 0.0021 23.5 6.4 48 70-140 12-59 (190)
82 KOG3247 Uncharacterized conser 45.4 12 0.00025 32.0 1.3 76 48-144 3-81 (466)
83 CHL00140 rpl6 ribosomal protei 44.6 98 0.0021 23.1 6.1 44 71-140 12-55 (178)
84 KOG3413 Mitochondrial matrix p 44.5 11 0.00023 27.5 0.9 23 119-141 67-89 (156)
85 PF13349 DUF4097: Domain of un 44.4 99 0.0022 21.8 6.0 16 50-65 86-101 (166)
86 PF14814 UB2H: Bifunctional tr 44.3 52 0.0011 21.3 4.1 43 97-139 29-73 (85)
87 cd06494 p23_NUDCD2_like p23-li 43.6 53 0.0011 21.8 4.1 30 110-139 16-45 (93)
88 PRK11198 LysM domain/BON super 41.3 34 0.00074 24.6 3.1 25 67-92 38-62 (147)
89 PF03983 SHD1: SLA1 homology d 40.3 33 0.00071 21.8 2.5 36 51-86 13-48 (70)
90 cd02178 GH16_beta_agarase Beta 39.1 1.5E+02 0.0032 23.1 6.7 44 76-120 60-110 (258)
91 PF07076 DUF1344: Protein of u 38.0 36 0.00077 21.1 2.3 15 113-127 25-39 (61)
92 cd08023 GH16_laminarinase_like 37.4 1.8E+02 0.004 22.0 7.0 49 69-120 35-91 (235)
93 PF09985 DUF2223: Domain of un 36.9 1.4E+02 0.0031 23.2 6.1 98 46-143 31-143 (228)
94 cd00503 Frataxin Frataxin is a 36.1 40 0.00087 23.0 2.6 18 124-141 28-45 (105)
95 PTZ00179 60S ribosomal protein 36.0 1.6E+02 0.0035 22.2 6.1 47 71-140 12-58 (189)
96 PF14913 DPCD: DPCD protein fa 35.5 52 0.0011 25.1 3.3 42 50-92 122-170 (194)
97 PF01491 Frataxin_Cyay: Fratax 34.9 55 0.0012 22.4 3.2 19 124-142 30-48 (109)
98 PRK00446 cyaY frataxin-like pr 34.3 43 0.00094 22.9 2.6 17 126-142 29-45 (105)
99 cd02175 GH16_lichenase lichena 33.4 1.4E+02 0.003 22.5 5.5 47 71-120 31-80 (212)
100 PF08845 SymE_toxin: Toxin Sym 32.9 71 0.0015 19.3 3.1 21 66-87 35-56 (57)
101 TIGR03421 FeS_CyaY iron donor 32.7 42 0.00092 22.8 2.3 17 125-141 26-42 (102)
102 PF15631 Imm-NTF2-2: NTF2 fold 31.8 1.3E+02 0.0029 18.8 5.8 42 47-88 20-64 (66)
103 PF13620 CarboxypepD_reg: Carb 31.0 58 0.0013 20.1 2.7 29 58-86 48-77 (82)
104 PF00347 Ribosomal_L6: Ribosom 29.7 1.4E+02 0.003 18.3 4.5 44 71-140 2-47 (77)
105 PF11033 ComJ: Competence prot 29.7 1.9E+02 0.0042 20.5 5.3 31 111-142 65-97 (125)
106 PF07873 YabP: YabP family; I 29.3 51 0.0011 20.3 2.1 23 68-91 22-44 (66)
107 COG4004 Uncharacterized protei 29.0 1.6E+02 0.0034 19.8 4.4 35 50-89 25-59 (96)
108 PF06964 Alpha-L-AF_C: Alpha-L 26.3 1.4E+02 0.003 21.7 4.3 28 115-142 149-176 (177)
109 cd08024 GH16_CCF Coelomic cyto 26.2 3.7E+02 0.008 22.1 7.7 15 106-120 112-126 (330)
110 cd02179 GH16_beta_GRP beta-1,3 25.6 3.7E+02 0.0081 21.9 8.2 13 107-119 110-122 (321)
111 TIGR03422 mito_frataxin fratax 25.5 55 0.0012 22.0 1.8 16 127-142 30-45 (97)
112 PF02736 Myosin_N: Myosin N-te 25.4 78 0.0017 17.6 2.2 26 62-87 14-39 (42)
113 cd02182 GH16_Strep_laminarinas 24.3 1.7E+02 0.0036 22.9 4.7 14 77-91 49-63 (259)
114 TIGR02892 spore_yabP sporulati 24.2 66 0.0014 21.1 2.0 22 68-90 21-42 (85)
115 TIGR02856 spore_yqfC sporulati 24.2 64 0.0014 21.1 1.9 40 49-90 20-61 (85)
116 cd02177 GH16_kappa_carrageenas 23.8 3.8E+02 0.0082 21.4 7.0 17 75-92 45-61 (269)
117 smart00813 Alpha-L-AF_C Alpha- 23.6 2.2E+02 0.0048 21.0 5.0 27 116-142 161-188 (189)
118 PF12624 Chorein_N: N-terminal 23.5 68 0.0015 21.9 2.1 21 67-88 18-38 (118)
119 PF14869 DUF4488: Domain of un 23.0 2.9E+02 0.0063 19.8 9.4 73 48-140 26-100 (133)
120 TIGR02934 nifT_nitrog probable 22.7 79 0.0017 19.9 2.0 16 131-146 9-24 (67)
121 cd00413 Glyco_hydrolase_16 gly 22.4 2.5E+02 0.0055 20.6 5.2 15 106-120 65-79 (210)
122 PRK14291 chaperone protein Dna 21.7 3.8E+02 0.0083 22.3 6.6 28 116-143 284-312 (382)
123 TIGR00251 conserved hypothetic 21.1 2.4E+02 0.0052 18.5 4.2 39 53-92 1-41 (87)
124 PRK13605 endoribonuclease SymE 20.4 1.5E+02 0.0032 20.7 3.2 24 67-91 50-74 (113)
125 cd02180 GH16_fungal_KRE6_gluca 20.3 3.5E+02 0.0076 21.9 5.8 46 71-119 40-90 (295)
126 PF14014 DUF4230: Protein of u 20.2 74 0.0016 22.6 1.8 29 115-143 46-79 (157)
127 PF13014 KH_3: KH domain 20.1 1.4E+02 0.003 16.3 2.6 21 136-156 23-43 (43)
128 COG2880 Uncharacterized protei 20.0 9.2 0.0002 24.1 -2.6 11 126-136 7-17 (67)
No 1
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.97 E-value=3.4e-30 Score=186.39 Aligned_cols=105 Identities=19% Similarity=0.314 Sum_probs=93.5
Q ss_pred ccceeEEEE-CCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCc
Q 043288 47 VNTRMDWKE-TPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQ 125 (156)
Q Consensus 47 ~~p~~di~e-~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~ 125 (156)
..|++||+| ++++|+|+++|||++++||+|.+++ +.|+|+|++..+ .++.+|+++||++|.|+|+|.||++||.+
T Consensus 31 ~~P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~-~~LtI~ge~~~~--~~~~~~~~~Er~~g~F~R~f~LP~~vd~~- 106 (142)
T PRK11597 31 SFPPYNIEKSDDNHYRITLALAGFRQEDLDIQLEG-TRLTVKGTPEQP--EKEVKWLHQGLVNQPFSLSFTLAENMEVS- 106 (142)
T ss_pred CCCcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEEC-CEEEEEEEEccc--cCCCcEEEEEEeCcEEEEEEECCCCcccC-
Confidence 458999998 5779999999999999999999997 599999997643 35678999999999999999999999998
Q ss_pred eEEEEeCCEEEEEEeccCCCCCCeeEEecCC
Q 043288 126 VRASIEDGVLTVTVPKEEVKKPELKAIEISG 156 (156)
Q Consensus 126 i~A~~~nGvL~I~lPK~~~~~~~~~~I~I~~ 156 (156)
+|+|+||||+|+|||..++..++++|+|+.
T Consensus 107 -~A~~~nGVL~I~lPK~~~~~~~~rkI~I~~ 136 (142)
T PRK11597 107 -GATFVNGLLHIDLIRNEPEAIAPQRIAISE 136 (142)
T ss_pred -cCEEcCCEEEEEEeccCccccCCcEEEECC
Confidence 799999999999999866666779999974
No 2
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.96 E-value=3.1e-29 Score=180.66 Aligned_cols=102 Identities=18% Similarity=0.322 Sum_probs=92.3
Q ss_pred ceeEEEE-CCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceE
Q 043288 49 TRMDWKE-TPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVR 127 (156)
Q Consensus 49 p~~di~e-~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~ 127 (156)
|++||.+ ++++|.|.++|||++++||+|++.+ +.|+|+|++..+. ++.+|+++||.+|+|+|+|.||++||.+ +
T Consensus 35 p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~-~~LtI~ge~~~~~--~~~~~~~~Er~~g~F~R~~~LP~~Vd~~--~ 109 (137)
T PRK10743 35 PPYNVELVDENHYRIAIAVAGFAESELEITAQD-NLLVVKGAHADEQ--KERTYLYQGIAERNFERKFQLAENIHVR--G 109 (137)
T ss_pred CcEEEEEcCCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEECccc--cCCcEEEEEEECCEEEEEEECCCCcccC--c
Confidence 8899994 8999999999999999999999998 5999999976543 4568999999999999999999999998 5
Q ss_pred EEEeCCEEEEEEeccCCCCCCeeEEecC
Q 043288 128 ASIEDGVLTVTVPKEEVKKPELKAIEIS 155 (156)
Q Consensus 128 A~~~nGvL~I~lPK~~~~~~~~~~I~I~ 155 (156)
|+|+||||+|++||..++..++++|+|+
T Consensus 110 A~~~dGVL~I~lPK~~~~~~~~r~I~I~ 137 (137)
T PRK10743 110 ANLVNGLLYIDLERVIPEAKKPRRIEIN 137 (137)
T ss_pred CEEeCCEEEEEEeCCCccccCCeEEeeC
Confidence 9999999999999986666777999985
No 3
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=8.4e-29 Score=180.46 Aligned_cols=109 Identities=37% Similarity=0.607 Sum_probs=101.7
Q ss_pred cccceeEEEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCc
Q 043288 46 IVNTRMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQ 125 (156)
Q Consensus 46 ~~~p~~di~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~ 125 (156)
.+.|++||++++++|.|.++|||++++||+|++.+ +.|+|+|++..+...+...++++|+.+|.|+|+|.||..|+.+.
T Consensus 38 ~~~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~-~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~ 116 (146)
T COG0071 38 TGTPPVDIEETDDEYRITAELPGVDKEDIEITVEG-NTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEV 116 (146)
T ss_pred CCCCcEEEEEcCCEEEEEEEcCCCChHHeEEEEEC-CEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccc
Confidence 45799999999999999999999999999999997 59999999988767778899999999999999999999999999
Q ss_pred eEEEEeCCEEEEEEeccCCCCCCeeEEecC
Q 043288 126 VRASIEDGVLTVTVPKEEVKKPELKAIEIS 155 (156)
Q Consensus 126 i~A~~~nGvL~I~lPK~~~~~~~~~~I~I~ 155 (156)
++|+|+||+|+|+|||..++..+.++|+|+
T Consensus 117 ~~A~~~nGvL~I~lpk~~~~~~~~~~i~I~ 146 (146)
T COG0071 117 IKAKYKNGLLTVTLPKAEPEEKKPKRIEIE 146 (146)
T ss_pred eeeEeeCcEEEEEEeccccccccCceeecC
Confidence 999999999999999999887677888885
No 4
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.95 E-value=1.8e-27 Score=160.72 Aligned_cols=92 Identities=67% Similarity=1.153 Sum_probs=86.0
Q ss_pred eeEEEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEEE
Q 043288 50 RMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRAS 129 (156)
Q Consensus 50 ~~di~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A~ 129 (156)
++||+|++++|+|.++|||+++++|+|++.+++.|+|+|++..+...++..++++|+.+|.|.|+|.||..||.++|+|+
T Consensus 1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~ 80 (92)
T cd06472 1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAF 80 (92)
T ss_pred CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEE
Confidence 47999999999999999999999999999865689999998776666678999999999999999999999999999999
Q ss_pred EeCCEEEEEEec
Q 043288 130 IEDGVLTVTVPK 141 (156)
Q Consensus 130 ~~nGvL~I~lPK 141 (156)
|+||+|+|++||
T Consensus 81 ~~nGvL~I~lPK 92 (92)
T cd06472 81 LENGVLTVTVPK 92 (92)
T ss_pred EECCEEEEEecC
Confidence 999999999998
No 5
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=99.94 E-value=1.3e-25 Score=153.92 Aligned_cols=101 Identities=43% Similarity=0.730 Sum_probs=84.3
Q ss_pred EEEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEEEEe
Q 043288 52 DWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIE 131 (156)
Q Consensus 52 di~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A~~~ 131 (156)
||.+++++|.|.++|||+++++|+|+++++ .|+|+|++. ....+..++..|++.+.|.|+|.||.++|.++|+|.|+
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~~-~L~I~g~~~--~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~ 77 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDDN-KLVISGKRK--EEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYE 77 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEETT-EEEEEEEEE--GEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEET
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEecC-ccceeceee--eeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEec
Confidence 799999999999999999999999999984 999999998 33455678889999999999999999999999999999
Q ss_pred CCEEEEEEeccCCCCC-CeeEEecC
Q 043288 132 DGVLTVTVPKEEVKKP-ELKAIEIS 155 (156)
Q Consensus 132 nGvL~I~lPK~~~~~~-~~~~I~I~ 155 (156)
||+|+|++||...... ..++|+|+
T Consensus 78 ~GvL~I~~pk~~~~~~~~~~~I~I~ 102 (102)
T PF00011_consen 78 NGVLTITIPKKEEEEDSQPKRIPIK 102 (102)
T ss_dssp TSEEEEEEEBSSSCTTSSSCEE-ET
T ss_pred CCEEEEEEEccccccCCCCeEEEeC
Confidence 9999999999987643 77999986
No 6
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.93 E-value=2.6e-25 Score=150.32 Aligned_cols=91 Identities=42% Similarity=0.705 Sum_probs=82.7
Q ss_pred ceeEEEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEecccc--CCCccEEEEeeeceEEEEEEECCCCCccCce
Q 043288 49 TRMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVERE--DKNETWHRVERSRGKFLRRFRLPENGKIDQV 126 (156)
Q Consensus 49 p~~di~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~--~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i 126 (156)
+++||+|++++|+|.++|||+++++|+|.+.+ +.|+|+|++....+ ..+..++++|+.+|+|.|+|.|| .++.+.|
T Consensus 1 ~~~di~e~~~~~~i~~~lPGv~~edi~v~~~~-~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i 78 (93)
T cd06471 1 MKTDIKETDDEYIVEADLPGFKKEDIKLDYKD-GYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEI 78 (93)
T ss_pred CceeEEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHC
Confidence 36899999999999999999999999999997 59999999976433 23458999999999999999999 7999999
Q ss_pred EEEEeCCEEEEEEec
Q 043288 127 RASIEDGVLTVTVPK 141 (156)
Q Consensus 127 ~A~~~nGvL~I~lPK 141 (156)
+|+|+||+|+|++||
T Consensus 79 ~A~~~dGvL~I~lPK 93 (93)
T cd06471 79 KAKYENGVLKITLPK 93 (93)
T ss_pred EEEEECCEEEEEEcC
Confidence 999999999999998
No 7
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.92 E-value=1.8e-24 Score=145.61 Aligned_cols=89 Identities=20% Similarity=0.439 Sum_probs=81.8
Q ss_pred ceeEEEECC-CeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceE
Q 043288 49 TRMDWKETP-EAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVR 127 (156)
Q Consensus 49 p~~di~e~~-~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~ 127 (156)
|++||++++ ++|+|.++|||+++++|+|.+++ +.|+|+|++..... .+.+|+++|+.+|+|.|+|.||.++|.. +
T Consensus 1 p~~di~e~~~~~~~v~~~lPG~~kedi~v~~~~-~~L~I~g~~~~~~~-~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~ 76 (90)
T cd06470 1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEVEN-NQLTVTGKKADEEN-EEREYLHRGIAKRAFERSFNLADHVKVK--G 76 (90)
T ss_pred CCeeeEEcCCCeEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEccccc-CCCcEEEEEEeceEEEEEEECCCCceEC--e
Confidence 679999975 89999999999999999999997 59999999987655 6678999999999999999999999975 9
Q ss_pred EEEeCCEEEEEEec
Q 043288 128 ASIEDGVLTVTVPK 141 (156)
Q Consensus 128 A~~~nGvL~I~lPK 141 (156)
|+|+||+|+|+||+
T Consensus 77 A~~~~GvL~I~l~~ 90 (90)
T cd06470 77 AELENGLLTIDLER 90 (90)
T ss_pred eEEeCCEEEEEEEC
Confidence 99999999999985
No 8
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.91 E-value=2.1e-23 Score=139.34 Aligned_cols=82 Identities=24% Similarity=0.475 Sum_probs=73.5
Q ss_pred EEEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEEEE-
Q 043288 52 DWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASI- 130 (156)
Q Consensus 52 di~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A~~- 130 (156)
+|.+++++|.|.++|||+++++|+|++.+ +.|+|+|++.... ++..|+++| |.|+|.||++||.++|+|+|
T Consensus 4 ~v~e~~~~~~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~~~--~~~~~~~~e-----f~R~~~LP~~Vd~~~i~A~~~ 75 (86)
T cd06497 4 EVRSDRDKFTIYLDVKHFSPEDLTVKVLD-DYVEIHGKHSERQ--DDHGYISRE-----FHRRYRLPSNVDQSAITCSLS 75 (86)
T ss_pred eEEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEccee--CCCCEEEEE-----EEEEEECCCCCChHHeEEEeC
Confidence 79999999999999999999999999998 5999999875433 344666665 99999999999999999999
Q ss_pred eCCEEEEEEec
Q 043288 131 EDGVLTVTVPK 141 (156)
Q Consensus 131 ~nGvL~I~lPK 141 (156)
+||+|+|++||
T Consensus 76 ~dGvL~I~~PK 86 (86)
T cd06497 76 ADGMLTFSGPK 86 (86)
T ss_pred CCCEEEEEecC
Confidence 89999999998
No 9
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.89 E-value=9.2e-23 Score=135.39 Aligned_cols=82 Identities=21% Similarity=0.435 Sum_probs=72.1
Q ss_pred EEEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEEEE-
Q 043288 52 DWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASI- 130 (156)
Q Consensus 52 di~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A~~- 130 (156)
+|.+++++|.|.++||||++++|+|++.+ +.|+|+|++..+. +...|+++| |.|+|.||.+||.++|+|+|
T Consensus 1 ~~~~~~~~~~v~~dlpG~~~edI~V~v~~-~~L~I~g~~~~~~--~~~~~~~~e-----f~R~~~LP~~vd~~~i~A~~~ 72 (83)
T cd06478 1 EVRLDKDRFSVNLDVKHFSPEELSVKVLG-DFVEIHGKHEERQ--DEHGFISRE-----FHRRYRLPPGVDPAAITSSLS 72 (83)
T ss_pred CeeecCceEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEceEc--CCCCEEEEE-----EEEEEECCCCcChHHeEEEEC
Confidence 47889999999999999999999999997 5999999875433 234566654 99999999999999999999
Q ss_pred eCCEEEEEEec
Q 043288 131 EDGVLTVTVPK 141 (156)
Q Consensus 131 ~nGvL~I~lPK 141 (156)
+||+|+|++||
T Consensus 73 ~dGvL~I~~PK 83 (83)
T cd06478 73 ADGVLTISGPR 83 (83)
T ss_pred CCCEEEEEecC
Confidence 69999999998
No 10
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.89 E-value=9.7e-23 Score=135.54 Aligned_cols=82 Identities=20% Similarity=0.420 Sum_probs=71.8
Q ss_pred EEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEEEEe-
Q 043288 53 WKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIE- 131 (156)
Q Consensus 53 i~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A~~~- 131 (156)
+++++++|.|.++|||+++++|+|++.+ +.|+|+|++..+. ++..|+++ .|.|+|.||.+||.++|+|+|+
T Consensus 2 ~~~~~~~~~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~~~--~~~~~~~~-----eF~R~~~LP~~vd~~~i~A~~~~ 73 (84)
T cd06498 2 MRLEKDKFSVNLDVKHFSPEELKVKVLG-DFIEIHGKHEERQ--DEHGFISR-----EFQRKYRIPADVDPLTITSSLSP 73 (84)
T ss_pred eEeCCceEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEccee--CCCCEEEE-----EEEEEEECCCCCChHHcEEEeCC
Confidence 6788999999999999999999999997 5999999875443 33456554 4999999999999999999995
Q ss_pred CCEEEEEEecc
Q 043288 132 DGVLTVTVPKE 142 (156)
Q Consensus 132 nGvL~I~lPK~ 142 (156)
||+|+|++||+
T Consensus 74 dGvL~I~lPk~ 84 (84)
T cd06498 74 DGVLTVCGPRK 84 (84)
T ss_pred CCEEEEEEeCC
Confidence 99999999985
No 11
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.89 E-value=8.4e-23 Score=134.83 Aligned_cols=79 Identities=23% Similarity=0.413 Sum_probs=71.4
Q ss_pred EEEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEEEE-
Q 043288 52 DWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASI- 130 (156)
Q Consensus 52 di~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A~~- 130 (156)
||.|++++|.|.++|||++++||+|++.+ +.|+|+|+++.+. +..+|+|+|+|.||.+||+++|+|+|
T Consensus 2 ~v~e~~~~~~v~~dlpG~~pedi~V~v~~-~~L~I~ger~~~~----------~~~~g~F~R~~~LP~~vd~e~v~A~l~ 70 (81)
T cd06479 2 NVKTLGDTYQFAVDVSDFSPEDIIVTTSN-NQIEVHAEKLASD----------GTVMNTFTHKCQLPEDVDPTSVSSSLG 70 (81)
T ss_pred CccCcCCeEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEeccC----------CCEEEEEEEEEECCCCcCHHHeEEEec
Confidence 68999999999999999999999999997 5999999985432 12478999999999999999999998
Q ss_pred eCCEEEEEEec
Q 043288 131 EDGVLTVTVPK 141 (156)
Q Consensus 131 ~nGvL~I~lPK 141 (156)
+||+|+|++++
T Consensus 71 ~~GvL~I~~~~ 81 (81)
T cd06479 71 EDGTLTIKARR 81 (81)
T ss_pred CCCEEEEEecC
Confidence 99999999985
No 12
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.87 E-value=9.6e-22 Score=131.31 Aligned_cols=82 Identities=23% Similarity=0.451 Sum_probs=71.7
Q ss_pred eEEEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEEEE
Q 043288 51 MDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASI 130 (156)
Q Consensus 51 ~di~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A~~ 130 (156)
.+|+|++++|.|.++|||+++++|+|++.+ +.|+|+|++..+.. ...+. .++|+|+|.||..||.++|+|.|
T Consensus 3 ~~i~e~~~~~~v~~dlPG~~~edi~V~v~~-~~L~I~g~~~~~~~--~~~~~-----~~~f~R~f~LP~~vd~~~v~A~~ 74 (86)
T cd06475 3 SEIRQTADRWKVSLDVNHFAPEELVVKTKD-GVVEITGKHEEKQD--EHGFV-----SRCFTRKYTLPPGVDPTAVTSSL 74 (86)
T ss_pred ceEEEcCCeEEEEEECCCCCHHHEEEEEEC-CEEEEEEEECcCcC--CCCEE-----EEEEEEEEECCCCCCHHHcEEEE
Confidence 589999999999999999999999999997 59999999864332 22332 34799999999999999999999
Q ss_pred e-CCEEEEEEe
Q 043288 131 E-DGVLTVTVP 140 (156)
Q Consensus 131 ~-nGvL~I~lP 140 (156)
+ ||+|+|++|
T Consensus 75 ~~dGvL~I~lP 85 (86)
T cd06475 75 SPDGILTVEAP 85 (86)
T ss_pred CCCCeEEEEec
Confidence 6 999999998
No 13
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.87 E-value=1.4e-21 Score=129.70 Aligned_cols=81 Identities=21% Similarity=0.359 Sum_probs=69.4
Q ss_pred EEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEEEEe-
Q 043288 53 WKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIE- 131 (156)
Q Consensus 53 i~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A~~~- 131 (156)
+..++++|.|.++|||+++++|+|++.+ +.|+|+|++.... +...++++ .|.|+|.||.+||.++|+|+|.
T Consensus 2 ~~~~~d~y~v~~dlpG~~~edi~V~v~~-~~L~I~g~~~~~~--~~~~~~~~-----eF~R~~~LP~~vd~~~v~A~~~~ 73 (83)
T cd06476 2 VESEDDKYQVFLDVCHFTPDEITVRTVD-NLLEVSARHPQRM--DRHGFVSR-----EFTRTYILPMDVDPLLVRASLSH 73 (83)
T ss_pred eeccCCeEEEEEEcCCCCHHHeEEEEEC-CEEEEEEEEccee--cCCCEEEE-----EEEEEEECCCCCChhhEEEEecC
Confidence 4457899999999999999999999998 5999999985432 23335544 4999999999999999999995
Q ss_pred CCEEEEEEec
Q 043288 132 DGVLTVTVPK 141 (156)
Q Consensus 132 nGvL~I~lPK 141 (156)
||+|+|++||
T Consensus 74 dGvL~I~~Pr 83 (83)
T cd06476 74 DGILCIQAPR 83 (83)
T ss_pred CCEEEEEecC
Confidence 9999999997
No 14
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.87 E-value=1.1e-21 Score=131.33 Aligned_cols=83 Identities=27% Similarity=0.523 Sum_probs=72.4
Q ss_pred ECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEEEE-eCC
Q 043288 55 ETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASI-EDG 133 (156)
Q Consensus 55 e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A~~-~nG 133 (156)
+..++|.|.++|||++++||+|++.+ +.|+|+|++..+.......|. +.+|.|.|+|.||.+||.++|+|.| +||
T Consensus 4 ~~~d~~~v~~dlpG~~~edI~V~v~~-~~L~I~g~~~~~~~~~~~~~~---~~~~~F~R~~~LP~~Vd~~~i~A~~~~dG 79 (87)
T cd06481 4 DGKEGFSLKLDVRGFSPEDLSVRVDG-RKLVVTGKREKKNEDEKGSFS---YEYQEFVREAQLPEHVDPEAVTCSLSPSG 79 (87)
T ss_pred CccceEEEEEECCCCChHHeEEEEEC-CEEEEEEEEeeecccCCCcEE---EEeeEEEEEEECCCCcChHHeEEEeCCCc
Confidence 45679999999999999999999997 599999998765544444554 3478999999999999999999999 999
Q ss_pred EEEEEEec
Q 043288 134 VLTVTVPK 141 (156)
Q Consensus 134 vL~I~lPK 141 (156)
+|+|++|+
T Consensus 80 vL~I~~P~ 87 (87)
T cd06481 80 HLHIRAPR 87 (87)
T ss_pred eEEEEcCC
Confidence 99999995
No 15
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.87 E-value=3.3e-21 Score=127.70 Aligned_cols=88 Identities=51% Similarity=0.824 Sum_probs=80.7
Q ss_pred EEEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEEEEe
Q 043288 52 DWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIE 131 (156)
Q Consensus 52 di~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A~~~ 131 (156)
++.+++++|+|.++|||+++++|+|++.+ +.|.|+|++........ .+...++..+.|.|++.||..+|.+.++|.|+
T Consensus 1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~~-~~l~I~g~~~~~~~~~~-~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~ 78 (88)
T cd06464 1 DVYETDDAYVVEADLPGFKKEDIKVEVED-GVLTISGEREEEEEEEE-NYLRRERSYGSFSRSFRLPEDVDPDKIKASLE 78 (88)
T ss_pred CcEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEecccccCC-cEEEEEEeCcEEEEEEECCCCcCHHHcEEEEe
Confidence 47889999999999999999999999998 59999999987654433 78888999999999999999999999999999
Q ss_pred CCEEEEEEec
Q 043288 132 DGVLTVTVPK 141 (156)
Q Consensus 132 nGvL~I~lPK 141 (156)
||+|+|++||
T Consensus 79 ~G~L~I~~pk 88 (88)
T cd06464 79 NGVLTITLPK 88 (88)
T ss_pred CCEEEEEEcC
Confidence 9999999997
No 16
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=99.86 E-value=3.8e-21 Score=128.44 Aligned_cols=80 Identities=23% Similarity=0.328 Sum_probs=70.2
Q ss_pred CCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEEEEeCC-E
Q 043288 56 TPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDG-V 134 (156)
Q Consensus 56 ~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A~~~nG-v 134 (156)
+++.|+|.++|||+++++|+|++.+ +.|+|+|++..+.+... ..||.+|+|.|+|.||.+||.++|+|+|+|| +
T Consensus 6 ~~~~~~v~adlPG~~kedI~V~v~~-~~L~I~ger~~~~e~~~----~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~ 80 (87)
T cd06482 6 DSSNVLASVDVCGFEPDQVKVKVKD-GKVQVSAERENRYDCLG----SKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSV 80 (87)
T ss_pred cCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEecccccCC----ccEEEEEEEEEEEECCCCcChHHcEEEEcCCCE
Confidence 6789999999999999999999998 49999999876543222 2478999999999999999999999999766 9
Q ss_pred EEEEEe
Q 043288 135 LTVTVP 140 (156)
Q Consensus 135 L~I~lP 140 (156)
|+|.-|
T Consensus 81 l~i~~~ 86 (87)
T cd06482 81 VKIETP 86 (87)
T ss_pred EEEeeC
Confidence 999887
No 17
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=99.85 E-value=1.8e-20 Score=124.24 Aligned_cols=79 Identities=20% Similarity=0.379 Sum_probs=68.0
Q ss_pred EECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEEEE-eC
Q 043288 54 KETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASI-ED 132 (156)
Q Consensus 54 ~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A~~-~n 132 (156)
-+++++|.|+++|||+++++|+|++.+ +.|+|+|++..+.. ...+. .++|+|+|.||.+|+.++|+|+| +|
T Consensus 3 ~e~~~~~~v~~dlpG~~~edI~V~v~~-~~L~I~ge~~~~~~--~~~~~-----~r~F~R~~~LP~~Vd~~~v~A~~~~d 74 (83)
T cd06477 3 EEGKPMFQILLDVVQFRPEDIIIQVFE-GWLLIKGQHGVRMD--EHGFI-----SRSFTRQYQLPDGVEHKDLSAMLCHD 74 (83)
T ss_pred ccCCceEEEEEEcCCCCHHHeEEEEEC-CEEEEEEEEccccC--CCCEE-----EEEEEEEEECCCCcchheEEEEEcCC
Confidence 367899999999999999999999998 59999999876442 23332 23799999999999999999998 89
Q ss_pred CEEEEEEe
Q 043288 133 GVLTVTVP 140 (156)
Q Consensus 133 GvL~I~lP 140 (156)
|+|+|+.|
T Consensus 75 GvL~I~~~ 82 (83)
T cd06477 75 GILVVETK 82 (83)
T ss_pred CEEEEEec
Confidence 99999986
No 18
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.84 E-value=1e-20 Score=125.40 Aligned_cols=77 Identities=29% Similarity=0.530 Sum_probs=67.7
Q ss_pred CCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEEEEeC-CEE
Q 043288 57 PEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIED-GVL 135 (156)
Q Consensus 57 ~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A~~~n-GvL 135 (156)
+++|.|.++||||++++|+|++++ +.|+|+|++..... .. ++..+.|.|+|.||.+||.++++|+|.| |+|
T Consensus 6 ~~~~~v~~dlpG~~~edI~v~v~~-~~L~I~g~~~~~~~--~~-----~~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL 77 (83)
T cd06526 6 DEKFQVTLDVKGFKPEELKVKVSD-NKLVVEGKHEERED--EH-----GYVSREFTRRYQLPEGVDPDSVTSSLSSDGVL 77 (83)
T ss_pred CeeEEEEEECCCCCHHHcEEEEEC-CEEEEEEEEeeecc--CC-----CEEEEEEEEEEECCCCCChHHeEEEeCCCcEE
Confidence 369999999999999999999997 59999999876542 12 2346789999999999999999999998 999
Q ss_pred EEEEec
Q 043288 136 TVTVPK 141 (156)
Q Consensus 136 ~I~lPK 141 (156)
+|++||
T Consensus 78 ~I~~Pk 83 (83)
T cd06526 78 TIEAPK 83 (83)
T ss_pred EEEecC
Confidence 999997
No 19
>KOG0710 consensus Molecular chaperone (small heat-shock protein Hsp26/Hsp42) [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=2.1e-19 Score=136.83 Aligned_cols=114 Identities=54% Similarity=0.899 Sum_probs=101.5
Q ss_pred CcccccceeEEEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccC--CCccEEEEeeeceEEEEEEECCCC
Q 043288 43 TSAIVNTRMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVERED--KNETWHRVERSRGKFLRRFRLPEN 120 (156)
Q Consensus 43 ~~~~~~p~~di~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~--~~~~~~~~e~~~~~f~r~i~lP~~ 120 (156)
..+...++++|.++.+.|.+.+++||+.+++++|.++++++|+|+|++..+.+. ....|+..|+..|.|.|.+.||+.
T Consensus 79 ~~~~~~~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPen 158 (196)
T KOG0710|consen 79 AKSEARVPWDVKESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFELPEN 158 (196)
T ss_pred ccccccCCcccccCCCceEEEeeCCCCCchhceEEeccCcEEEEecccccccccccCCccceeehhcccceEeeecCCcc
Confidence 344445778899999999999999999999999999986689999998876554 567889999999999999999999
Q ss_pred CccCceEEEEeCCEEEEEEeccCC--CCCCeeEEecCC
Q 043288 121 GKIDQVRASIEDGVLTVTVPKEEV--KKPELKAIEISG 156 (156)
Q Consensus 121 vd~~~i~A~~~nGvL~I~lPK~~~--~~~~~~~I~I~~ 156 (156)
++.+.|+|.|+||+|+|++||..+ +....+.|.|.+
T Consensus 159 v~~d~ikA~~~nGVL~VvvpK~~~~~~~~~v~~i~i~~ 196 (196)
T KOG0710|consen 159 VDVDEIKAEMENGVLTVVVPKLEPLLKKPKVRQIAISG 196 (196)
T ss_pred ccHHHHHHHhhCCeEEEEEecccccccCCccceeeccC
Confidence 999999999999999999999988 678888888864
No 20
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=99.75 E-value=1.3e-17 Score=112.22 Aligned_cols=81 Identities=16% Similarity=0.335 Sum_probs=69.8
Q ss_pred EEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEEEEe-
Q 043288 53 WKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIE- 131 (156)
Q Consensus 53 i~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A~~~- 131 (156)
+..++++|.|.+++.||+++||+|++.+ +.|+|+|++..+..+ ..+. .+.|.|+|.||.+||.+.|+|.+.
T Consensus 10 ~~~~~~~f~v~ldv~gF~pEDL~Vkv~~-~~L~V~Gkh~~~~~e--~g~~-----~r~F~R~~~LP~~Vd~~~v~s~l~~ 81 (91)
T cd06480 10 PPNSSEPWKVCVNVHSFKPEELTVKTKD-GFVEVSGKHEEQQKE--GGIV-----SKNFTKKIQLPPEVDPVTVFASLSP 81 (91)
T ss_pred CCCCCCcEEEEEEeCCCCHHHcEEEEEC-CEEEEEEEECcccCC--CCEE-----EEEEEEEEECCCCCCchhEEEEeCC
Confidence 4557889999999999999999999997 599999998865432 2333 367999999999999999999996
Q ss_pred CCEEEEEEec
Q 043288 132 DGVLTVTVPK 141 (156)
Q Consensus 132 nGvL~I~lPK 141 (156)
||+|+|.+|.
T Consensus 82 dGvL~IeaP~ 91 (91)
T cd06480 82 EGLLIIEAPQ 91 (91)
T ss_pred CCeEEEEcCC
Confidence 9999999983
No 21
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=5.5e-17 Score=121.04 Aligned_cols=99 Identities=21% Similarity=0.423 Sum_probs=85.3
Q ss_pred ceeEEEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEE
Q 043288 49 TRMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRA 128 (156)
Q Consensus 49 p~~di~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A 128 (156)
...++..++++|.|.+|+..|++++|+|++.+ +.|.|+|++.+.. ++..+.. +.|.|++.||.+||++.|++
T Consensus 63 ~~~~~~~~~~~F~V~lDV~~F~PeEl~Vk~~~-~~l~V~gkHeer~--d~~G~v~-----R~F~R~y~LP~~vdp~~V~S 134 (173)
T KOG3591|consen 63 GASEIVNDKDKFEVNLDVHQFKPEELKVKTDD-NTLEVEGKHEEKE--DEHGYVS-----RSFVRKYLLPEDVDPTSVTS 134 (173)
T ss_pred cccccccCCCcEEEEEEcccCcccceEEEeCC-CEEEEEeeecccc--CCCCeEE-----EEEEEEecCCCCCChhheEE
Confidence 45788899999999999999999999999997 5999999987654 3344443 35999999999999999999
Q ss_pred EE-eCCEEEEEEeccCCCCCCeeEEecC
Q 043288 129 SI-EDGVLTVTVPKEEVKKPELKAIEIS 155 (156)
Q Consensus 129 ~~-~nGvL~I~lPK~~~~~~~~~~I~I~ 155 (156)
.+ .||+|+|++||........+.|+|+
T Consensus 135 ~LS~dGvLtI~ap~~~~~~~~er~ipI~ 162 (173)
T KOG3591|consen 135 TLSSDGVLTIEAPKPPPKQDNERSIPIE 162 (173)
T ss_pred eeCCCceEEEEccCCCCcCccceEEeEe
Confidence 99 8999999999998765566888885
No 22
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=99.59 E-value=2e-14 Score=91.96 Aligned_cols=80 Identities=50% Similarity=0.841 Sum_probs=70.7
Q ss_pred EEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEEEEeC
Q 043288 53 WKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIED 132 (156)
Q Consensus 53 i~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A~~~n 132 (156)
++++++.|.|.+++||+.+++++|.+++ +.|.|+|....... .+...+.|.+.+.||..++++.++|.+.+
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~-~~l~v~~~~~~~~~--------~~~~~~~~~~~~~L~~~i~~~~~~~~~~~ 71 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVED-NVLTISGKREEEEE--------RERSYGEFERSFELPEDVDPEKSKASLEN 71 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEEC-CEEEEEEEEcCCCc--------ceEeeeeEEEEEECCCCcCHHHCEEEEEC
Confidence 4678899999999999999999999997 59999998765432 33446789999999999999999999999
Q ss_pred CEEEEEEec
Q 043288 133 GVLTVTVPK 141 (156)
Q Consensus 133 GvL~I~lPK 141 (156)
|+|+|.+||
T Consensus 72 ~~l~i~l~K 80 (80)
T cd00298 72 GVLEITLPK 80 (80)
T ss_pred CEEEEEEcC
Confidence 999999997
No 23
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.36 E-value=7.4e-12 Score=81.36 Aligned_cols=71 Identities=27% Similarity=0.377 Sum_probs=64.1
Q ss_pred EEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEEEEeC
Q 043288 53 WKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIED 132 (156)
Q Consensus 53 i~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A~~~n 132 (156)
++++++.+.|.+.+||+++++++|.+++ +.|.|++. .|.+.+.||..||+++++|++.+
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~~-~~l~i~~~--------------------~~~~~~~l~~~I~~e~~~~~~~~ 59 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIFCSD-LYLKVNFP--------------------PYLFELDLAAPIDDEKSSAKIGN 59 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEEEec-CEEEEcCC--------------------CEEEEEeCcccccccccEEEEeC
Confidence 4688999999999999999999999997 58998861 27899999999999999999999
Q ss_pred CEEEEEEeccCC
Q 043288 133 GVLTVTVPKEEV 144 (156)
Q Consensus 133 GvL~I~lPK~~~ 144 (156)
|.|.|+|+|..+
T Consensus 60 ~~l~i~L~K~~~ 71 (78)
T cd06469 60 GVLVFTLVKKEP 71 (78)
T ss_pred CEEEEEEEeCCC
Confidence 999999999864
No 24
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=99.06 E-value=2.3e-09 Score=69.61 Aligned_cols=76 Identities=22% Similarity=0.336 Sum_probs=66.2
Q ss_pred EEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEEEEeC
Q 043288 53 WKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIED 132 (156)
Q Consensus 53 i~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A~~~n 132 (156)
++++++.+.|.+.+||..+++++|.+.+ +.|.|++.... .+.|...+.|+..|+++..++++.+
T Consensus 1 W~Q~~~~v~i~v~~~~~~~~~~~v~~~~-~~l~i~~~~~~---------------~~~~~~~~~L~~~I~~~~s~~~~~~ 64 (84)
T cd06463 1 WYQTLDEVTITIPLKDVTKKDVKVEFTP-KSLTVSVKGGG---------------GKEYLLEGELFGPIDPEESKWTVED 64 (84)
T ss_pred CcccccEEEEEEEcCCCCccceEEEEec-CEEEEEeeCCC---------------CCceEEeeEccCccchhhcEEEEeC
Confidence 3578899999999999999999999997 58999987431 1247788999999999999999999
Q ss_pred CEEEEEEeccCC
Q 043288 133 GVLTVTVPKEEV 144 (156)
Q Consensus 133 GvL~I~lPK~~~ 144 (156)
|.|.|+|+|+.+
T Consensus 65 ~~l~i~L~K~~~ 76 (84)
T cd06463 65 RKIEITLKKKEP 76 (84)
T ss_pred CEEEEEEEECCC
Confidence 999999999875
No 25
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=99.05 E-value=2.5e-09 Score=79.48 Aligned_cols=78 Identities=26% Similarity=0.528 Sum_probs=62.2
Q ss_pred cceeEEEECCC-eEEEEEEcCCCCCCC-eEEEEeCC-cEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccC
Q 043288 48 NTRMDWKETPE-AHVFKVDLPGLTKED-VKLEIEDH-RVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKID 124 (156)
Q Consensus 48 ~p~~di~e~~~-~~~i~~~lPG~~~ed-i~v~v~~g-~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~ 124 (156)
.+.+++.+.++ .+.|.++|||+++++ |+|.++.+ ..|+|+.. +.+.+++.||.. +.+
T Consensus 91 ~~~vdtre~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~~-------------------~~~~krv~L~~~-~~e 150 (177)
T PF05455_consen 91 SIHVDTRERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIRVG-------------------EKYLKRVALPWP-DPE 150 (177)
T ss_pred eeeeeeEecCCCcEEEEEeCCCCCcccceeeEeecCCceEEEecC-------------------CceEeeEecCCC-ccc
Confidence 47789998777 699999999999888 99999843 35555421 125688999966 678
Q ss_pred ceEEEEeCCEEEEEEeccCCC
Q 043288 125 QVRASIEDGVLTVTVPKEEVK 145 (156)
Q Consensus 125 ~i~A~~~nGvL~I~lPK~~~~ 145 (156)
.++|.|+||||+|+|-+....
T Consensus 151 ~~~~t~nNgILEIri~~~~~~ 171 (177)
T PF05455_consen 151 ITSATFNNGILEIRIRRTEES 171 (177)
T ss_pred eeeEEEeCceEEEEEeecCCC
Confidence 899999999999999887643
No 26
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.81 E-value=3.2e-08 Score=64.84 Aligned_cols=77 Identities=21% Similarity=0.280 Sum_probs=66.6
Q ss_pred EEEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEEEEe
Q 043288 52 DWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIE 131 (156)
Q Consensus 52 di~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A~~~ 131 (156)
|++++++.+.|.+.+||+.++++.|.+.+ +.|.|++... . .+.|...+.|+..|+++..++.+.
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~-~~l~i~~~~~-----~----------~~~~~~~~~L~~~I~~~~s~~~~~ 64 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNE-QSLSVSIILP-----G----------GSEYQLELDLFGPIDPEQSKVSVL 64 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEec-CEEEEEEECC-----C----------CCeEEEecccccccCchhcEEEEe
Confidence 57899999999999999999999999997 6899986632 0 124777889999999999999999
Q ss_pred CCEEEEEEeccCC
Q 043288 132 DGVLTVTVPKEEV 144 (156)
Q Consensus 132 nGvL~I~lPK~~~ 144 (156)
+|.|.|+|.|..+
T Consensus 65 ~~~vei~L~K~~~ 77 (84)
T cd06466 65 PTKVEITLKKAEP 77 (84)
T ss_pred CeEEEEEEEcCCC
Confidence 9999999999864
No 27
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=98.60 E-value=2e-06 Score=55.13 Aligned_cols=77 Identities=22% Similarity=0.354 Sum_probs=63.7
Q ss_pred ceeEEEECCCeEEEEEEcCCC--CCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCce
Q 043288 49 TRMDWKETPEAHVFKVDLPGL--TKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQV 126 (156)
Q Consensus 49 p~~di~e~~~~~~i~~~lPG~--~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i 126 (156)
|+++++++++.+.|.+.+++. .++++.|.+.+ +.|.|+...... ..|...+.|...|+++..
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~-~~l~v~~~~~~~---------------~~~~~~~~L~~~I~~~~s 64 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTD-TSLSVSIKSGDG---------------KEYLLEGELFGEIDPDES 64 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEET-TEEEEEEEETTS---------------CEEEEEEEBSS-BECCCE
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEe-eEEEEEEEccCC---------------ceEEEEEEEeeeEcchhc
Confidence 578999999999999999665 59999999998 589999664322 137778889999999999
Q ss_pred EEEEeCCEEEEEEec
Q 043288 127 RASIEDGVLTVTVPK 141 (156)
Q Consensus 127 ~A~~~nGvL~I~lPK 141 (156)
+..+.++.|.|+|.|
T Consensus 65 ~~~~~~~~i~i~L~K 79 (79)
T PF04969_consen 65 TWKVKDNKIEITLKK 79 (79)
T ss_dssp EEEEETTEEEEEEEB
T ss_pred EEEEECCEEEEEEEC
Confidence 999999999999987
No 28
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=98.31 E-value=1.5e-05 Score=54.98 Aligned_cols=78 Identities=14% Similarity=0.269 Sum_probs=65.9
Q ss_pred ceeEEEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEE
Q 043288 49 TRMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRA 128 (156)
Q Consensus 49 p~~di~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A 128 (156)
|+++++++.+.+.|.+.+|++ +++.|.+.. +.|.|++.... . ...|.-.+.|...|+++..+.
T Consensus 1 p~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~-~~l~v~~~~~~----~----------~~~y~~~~~L~~~I~pe~s~~ 63 (108)
T cd06465 1 PPVLWAQRSDVVYLTIELPDA--KDPKIKLEP-TSLSFKAKGGG----G----------GKKYEFDLEFYKEIDPEESKY 63 (108)
T ss_pred CceeeeECCCEEEEEEEeCCC--CCcEEEEEC-CEEEEEEEcCC----C----------CeeEEEEeEhhhhccccccEE
Confidence 578999999999999999998 889999997 58999975321 1 113667789999999999999
Q ss_pred EEeCCEEEEEEeccC
Q 043288 129 SIEDGVLTVTVPKEE 143 (156)
Q Consensus 129 ~~~nGvL~I~lPK~~ 143 (156)
++.++.|.|+|.|..
T Consensus 64 ~v~~~kveI~L~K~~ 78 (108)
T cd06465 64 KVTGRQIEFVLRKKE 78 (108)
T ss_pred EecCCeEEEEEEECC
Confidence 999999999999987
No 29
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=98.19 E-value=1.1e-05 Score=65.48 Aligned_cols=65 Identities=29% Similarity=0.554 Sum_probs=56.2
Q ss_pred CCeEEEEEEcCCC-CCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEEEE--eCC
Q 043288 57 PEAHVFKVDLPGL-TKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASI--EDG 133 (156)
Q Consensus 57 ~~~~~i~~~lPG~-~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A~~--~nG 133 (156)
.+.++|++.|||+ +..+|+|.|.+ +.|.|..... .|.-.+.||..||.+..+|+| +.+
T Consensus 260 p~~lvv~i~LP~~~s~~~i~LdV~~-~~l~l~~~~~------------------~y~L~l~LP~~V~~~~~~Akf~~~~~ 320 (328)
T PF08190_consen 260 PEELVVEIELPGVESASDIDLDVSE-DRLSLSSPKP------------------KYRLDLPLPYPVDEDNGKAKFDKKTK 320 (328)
T ss_pred CceEEEEEECCCcCccceeEEEEeC-CEEEEEeCCC------------------ceEEEccCCCcccCCCceEEEccCCC
Confidence 4789999999999 77999999998 5888884431 266779999999999999999 568
Q ss_pred EEEEEEe
Q 043288 134 VLTVTVP 140 (156)
Q Consensus 134 vL~I~lP 140 (156)
+|+|+||
T Consensus 321 ~L~vtlp 327 (328)
T PF08190_consen 321 TLTVTLP 327 (328)
T ss_pred EEEEEEE
Confidence 9999998
No 30
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=98.16 E-value=2.6e-05 Score=51.25 Aligned_cols=77 Identities=22% Similarity=0.297 Sum_probs=63.9
Q ss_pred EEEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEEEEe
Q 043288 52 DWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIE 131 (156)
Q Consensus 52 di~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A~~~ 131 (156)
|++++++...|.+.++|+.++++.|.+.+ +.|.+++.... + ..|.-.+.|...|++++.+....
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~-~~l~~~~~~~~-----~----------~~y~~~~~L~~~I~p~~s~~~v~ 64 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFEK-RELSATVKLPS-----G----------NDYSLKLHLLHPIVPEQSSYKIL 64 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEeC-CEEEEEEECCC-----C----------CcEEEeeecCceecchhcEEEEe
Confidence 57889999999999999999999999998 58999876411 1 12556678999999998888888
Q ss_pred CCEEEEEEeccCC
Q 043288 132 DGVLTVTVPKEEV 144 (156)
Q Consensus 132 nGvL~I~lPK~~~ 144 (156)
.+-+.|.|.|...
T Consensus 65 ~~kiei~L~K~~~ 77 (84)
T cd06489 65 STKIEIKLKKTEA 77 (84)
T ss_pred CcEEEEEEEcCCC
Confidence 9999999999753
No 31
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=97.98 E-value=0.00015 Score=48.12 Aligned_cols=79 Identities=20% Similarity=0.180 Sum_probs=66.0
Q ss_pred eeEEEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEEE
Q 043288 50 RMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRAS 129 (156)
Q Consensus 50 ~~di~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A~ 129 (156)
+.|++++++...|.+.+.|+.++++.+.+++ +.|.++..-.. + ..|.-.+.|-..|+++..+.+
T Consensus 2 R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~-~~l~v~~~~~~-----~----------~~y~~~l~L~~~I~~~~s~~~ 65 (87)
T cd06488 2 RHDWHQTGSHVVVSVYAKNSNPELSVVEANS-TVLTIHIVFEG-----N----------KEFQLDIELWGVIDVEKSSVN 65 (87)
T ss_pred CccEeeCCCEEEEEEEECcCCccceEEEecC-CEEEEEEECCC-----C----------ceEEEEeeccceEChhHcEEE
Confidence 4789999999999999999999999999987 58888754321 0 126677889999999998888
Q ss_pred EeCCEEEEEEeccCC
Q 043288 130 IEDGVLTVTVPKEEV 144 (156)
Q Consensus 130 ~~nGvL~I~lPK~~~ 144 (156)
...+-+.|+|.|+++
T Consensus 66 v~~~kvei~L~K~~~ 80 (87)
T cd06488 66 MLPTKVEIKLRKAEP 80 (87)
T ss_pred ecCcEEEEEEEeCCC
Confidence 899999999999864
No 32
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=97.91 E-value=0.00028 Score=46.89 Aligned_cols=79 Identities=11% Similarity=0.318 Sum_probs=63.7
Q ss_pred eeEEEECCCeEEEEEEcCCCCC---CCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEE-CCCCCccCc
Q 043288 50 RMDWKETPEAHVFKVDLPGLTK---EDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFR-LPENGKIDQ 125 (156)
Q Consensus 50 ~~di~e~~~~~~i~~~lPG~~~---edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~-lP~~vd~~~ 125 (156)
..+++++++...|.+.+|+..+ +++.|.+.. +.|.|++... ++. .|.-.+. |-..|+++.
T Consensus 3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~-~~l~v~~~~~-----~~~----------~~~~~~~~L~~~I~~e~ 66 (92)
T cd06468 3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTE-RSFELKVHDL-----NGK----------NYRFTINRLLKKIDPEK 66 (92)
T ss_pred eeeeecCCCEEEEEEEccCCCcCCcccEEEEecC-CEEEEEEECC-----CCc----------EEEEEehHhhCccCccc
Confidence 4789999999999999999876 999999997 5899987421 111 2444453 888999999
Q ss_pred eEEEEeCCEEEEEEeccCC
Q 043288 126 VRASIEDGVLTVTVPKEEV 144 (156)
Q Consensus 126 i~A~~~nGvL~I~lPK~~~ 144 (156)
.+.....+-+.|+|.|..+
T Consensus 67 s~~~~~~~ki~i~L~K~~~ 85 (92)
T cd06468 67 SSFKVKTDRIVITLAKKKE 85 (92)
T ss_pred cEEEEeCCEEEEEEEeCCC
Confidence 9999999999999999864
No 33
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=97.83 E-value=0.00028 Score=46.04 Aligned_cols=74 Identities=28% Similarity=0.433 Sum_probs=60.0
Q ss_pred EEEECCCeEEEEEEcC-CCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEEEE
Q 043288 52 DWKETPEAHVFKVDLP-GLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASI 130 (156)
Q Consensus 52 di~e~~~~~~i~~~lP-G~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A~~ 130 (156)
.++++++...|.+.+| ++.++++.+.+.+ +.|.|+... +. +.-.-.|...|+++...-.+
T Consensus 2 ~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~-~~l~v~~~~-------~~-----------~~l~~~L~~~I~~~~s~w~~ 62 (85)
T cd06467 2 SWTQTLDEVTVTIPLPEGTKSKDVKVEITP-KHLKVGVKG-------GE-----------PLLDGELYAKVKVDESTWTL 62 (85)
T ss_pred EEEeeCCEEEEEEECCCCCcceeEEEEEEc-CEEEEEECC-------CC-----------ceEcCcccCceeEcCCEEEE
Confidence 5789999999999998 7899999999998 588888541 00 11223688899999888888
Q ss_pred eC-CEEEEEEeccCC
Q 043288 131 ED-GVLTVTVPKEEV 144 (156)
Q Consensus 131 ~n-GvL~I~lPK~~~ 144 (156)
.+ ..|.|+|+|+.+
T Consensus 63 ~~~~~v~i~L~K~~~ 77 (85)
T cd06467 63 EDGKLLEITLEKRNE 77 (85)
T ss_pred eCCCEEEEEEEECCC
Confidence 88 999999999865
No 34
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=97.65 E-value=0.00095 Score=43.92 Aligned_cols=74 Identities=20% Similarity=0.318 Sum_probs=58.0
Q ss_pred EEEECCCeEEEEEEcC-CCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEEEE
Q 043288 52 DWKETPEAHVFKVDLP-GLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASI 130 (156)
Q Consensus 52 di~e~~~~~~i~~~lP-G~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A~~ 130 (156)
+++++.+...|.+.+| |+.+++++|.+.. +.|.|.... . . .+ -.-.|...|+++...=.+
T Consensus 2 ~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~-~~l~v~~~~--~-----~----------~~-~~g~L~~~I~~d~Stw~i 62 (85)
T cd06493 2 YWQQTEEDLTLTIRLPEDTTKEDIRIKFLP-DHISIALKD--Q-----A----------PL-LEGKLYSSIDHESSTWII 62 (85)
T ss_pred ccEEeCCEEEEEEECCCCCChhhEEEEEec-CEEEEEeCC--C-----C----------eE-EeCcccCcccccCcEEEE
Confidence 6789999999999996 9999999999997 588886420 0 0 01 223788899999877777
Q ss_pred eCC-EEEEEEeccCC
Q 043288 131 EDG-VLTVTVPKEEV 144 (156)
Q Consensus 131 ~nG-vL~I~lPK~~~ 144 (156)
.+| .|.|+|.|+.+
T Consensus 63 ~~~~~l~i~L~K~~~ 77 (85)
T cd06493 63 KENKSLEVSLIKKDE 77 (85)
T ss_pred eCCCEEEEEEEECCC
Confidence 666 79999999864
No 35
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=97.49 E-value=0.003 Score=43.57 Aligned_cols=78 Identities=14% Similarity=0.218 Sum_probs=61.5
Q ss_pred ceeEEEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEE
Q 043288 49 TRMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRA 128 (156)
Q Consensus 49 p~~di~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A 128 (156)
|+++++++.+.+.|++.+|+ .++++|.+++ +.|+++|.-. ++. .|.-.+.|=..|++++.+.
T Consensus 2 p~v~WaQr~~~V~ltI~v~d--~~d~~v~l~~-~~l~f~~~~~-----~g~----------~y~~~l~l~~~I~pe~Sk~ 63 (106)
T cd00237 2 AKTLWYDRRDYVFIEFCVED--SKDVKVDFEK-SKLTFSCLNG-----DNV----------KIYNEIELYDRVDPNDSKH 63 (106)
T ss_pred CcceeeECCCEEEEEEEeCC--CCCcEEEEec-CEEEEEEECC-----CCc----------EEEEEEEeecccCcccCeE
Confidence 77999999999999999999 5799999997 5899998431 111 1445577878899997777
Q ss_pred EEeCCEEEEEEeccCC
Q 043288 129 SIEDGVLTVTVPKEEV 144 (156)
Q Consensus 129 ~~~nGvL~I~lPK~~~ 144 (156)
+...--+.|.|.|+..
T Consensus 64 ~v~~r~ve~~L~K~~~ 79 (106)
T cd00237 64 KRTDRSILCCLRKGKE 79 (106)
T ss_pred EeCCceEEEEEEeCCC
Confidence 7767788899999864
No 36
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=97.28 E-value=0.006 Score=41.07 Aligned_cols=77 Identities=19% Similarity=0.351 Sum_probs=60.3
Q ss_pred cceeEEEECCCeEEEEEEcC-CCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCce
Q 043288 48 NTRMDWKETPEAHVFKVDLP-GLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQV 126 (156)
Q Consensus 48 ~p~~di~e~~~~~~i~~~lP-G~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i 126 (156)
.+...++++.+...|.+.+| |+.++|+.|.+.. +.|.|...- ..+ -.| .|...|+++..
T Consensus 5 ~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~-~~l~V~~~g--------~~~-----l~G------~L~~~I~~des 64 (93)
T cd06494 5 TPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGS-RDISLAVKG--------QEV-----LKG------KLFDSVVADEC 64 (93)
T ss_pred CCCcEEEeEcCEEEEEEECCCCCceeeEEEEEEc-CEEEEEECC--------EEE-----EcC------cccCccCcccC
Confidence 36789999999999999998 8999999999998 588887411 000 011 57888999987
Q ss_pred EEEEeCCE-EEEEEeccCC
Q 043288 127 RASIEDGV-LTVTVPKEEV 144 (156)
Q Consensus 127 ~A~~~nGv-L~I~lPK~~~ 144 (156)
.=.+++|- |.|+|.|...
T Consensus 65 tWtled~k~l~I~L~K~~~ 83 (93)
T cd06494 65 TWTLEDRKLIRIVLTKSNR 83 (93)
T ss_pred EEEEECCcEEEEEEEeCCC
Confidence 77787775 8999999863
No 37
>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]
Probab=97.08 E-value=0.0029 Score=47.41 Aligned_cols=80 Identities=21% Similarity=0.303 Sum_probs=62.3
Q ss_pred cceeEEEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceE
Q 043288 48 NTRMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVR 127 (156)
Q Consensus 48 ~p~~di~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~ 127 (156)
.++.|++++.+..+|.+-.+++.+++++|.+.+ +.|.+..+-.... .|.-...|-..|.++..+
T Consensus 3 k~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~-~~l~~~~~~~~g~---------------~~~l~~~L~~~I~pe~~s 66 (196)
T KOG1309|consen 3 KIRHDWYQTETSVVITIFAKNVPKEDVNVEISE-NTLSIVIQLPSGS---------------EYNLQLKLYHEIIPEKSS 66 (196)
T ss_pred cccceeecCCceEEEEEEecCCCccceeEEeec-ceEEEEEecCCch---------------hhhhhHHhccccccccee
Confidence 467899999999999999999999999999997 6888876653221 144445576778888777
Q ss_pred EEEeCCEEEEEEeccC
Q 043288 128 ASIEDGVLTVTVPKEE 143 (156)
Q Consensus 128 A~~~nGvL~I~lPK~~ 143 (156)
-+.----+.|+|+|..
T Consensus 67 ~k~~stKVEI~L~K~~ 82 (196)
T KOG1309|consen 67 FKVFSTKVEITLAKAE 82 (196)
T ss_pred eEeeeeeEEEEecccc
Confidence 7777778889988854
No 38
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.06 E-value=0.0069 Score=50.04 Aligned_cols=81 Identities=19% Similarity=0.276 Sum_probs=66.7
Q ss_pred cceeEEEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceE
Q 043288 48 NTRMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVR 127 (156)
Q Consensus 48 ~p~~di~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~ 127 (156)
.++.+++++++.+.|.|.+.|+.++++.|.+.+ +.|.|+...... ..|...+.|-..|+++..+
T Consensus 156 ~~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~-~~l~v~~~~~~~---------------~~y~~~~~L~~~I~p~~s~ 219 (356)
T PLN03088 156 KYRHEFYQKPEEVVVTVFAKGVPAENVNVDFGE-QILSVVIEVPGE---------------DAYHLQPRLFGKIIPDKCK 219 (356)
T ss_pred ccccceeecCCEEEEEEEecCCChHHcEEEeec-CEEEEEEecCCC---------------cceeecccccccccccccE
Confidence 477899999999999999999999999999997 588888643211 1255567888899999988
Q ss_pred EEEeCCEEEEEEeccCC
Q 043288 128 ASIEDGVLTVTVPKEEV 144 (156)
Q Consensus 128 A~~~nGvL~I~lPK~~~ 144 (156)
.+..-.-+.|+|.|...
T Consensus 220 ~~v~~~Kiei~l~K~~~ 236 (356)
T PLN03088 220 YEVLSTKIEIRLAKAEP 236 (356)
T ss_pred EEEecceEEEEEecCCC
Confidence 88888899999998864
No 39
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=96.45 E-value=0.089 Score=34.72 Aligned_cols=76 Identities=17% Similarity=0.253 Sum_probs=53.7
Q ss_pred eEEEECCCeEEEEEEcCCCCCCC--eEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEE
Q 043288 51 MDWKETPEAHVFKVDLPGLTKED--VKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRA 128 (156)
Q Consensus 51 ~di~e~~~~~~i~~~lPG~~~ed--i~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A 128 (156)
.|++++++...|.+...+....+ +.+.... +.|.|+-... .. .|...+.|=..|+++. +.
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~-~~l~v~~~~~-~~---------------~~~~~~~L~~~I~~~~-~~ 62 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQ-RELRVEIILG-DK---------------SYLLHLDLSNEVQWPC-EV 62 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEECCC-CEEEEEEECC-Cc---------------eEEEeeeccccCCCCc-EE
Confidence 37899999999999998654444 4455454 4788875422 10 2667778888888775 55
Q ss_pred EEe--CCEEEEEEeccCC
Q 043288 129 SIE--DGVLTVTVPKEEV 144 (156)
Q Consensus 129 ~~~--nGvL~I~lPK~~~ 144 (156)
++. -|-+.|+|.|.++
T Consensus 63 ~~~~~~~KVEI~L~K~e~ 80 (87)
T cd06490 63 RISTETGKIELVLKKKEP 80 (87)
T ss_pred EEcccCceEEEEEEcCCC
Confidence 554 7899999999864
No 40
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=95.84 E-value=0.13 Score=33.96 Aligned_cols=74 Identities=26% Similarity=0.330 Sum_probs=54.3
Q ss_pred EEEECCCeEEEEEEcC-C--CCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEE
Q 043288 52 DWKETPEAHVFKVDLP-G--LTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRA 128 (156)
Q Consensus 52 di~e~~~~~~i~~~lP-G--~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A 128 (156)
.+.++.+...|.+.+| + ..+.+++|.+.. +.|.|.-+.. .. + -.=.|...|+++...=
T Consensus 2 ~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~-~~l~v~~~g~--------~~---------~-i~G~L~~~V~~des~W 62 (87)
T cd06492 2 RWTQTLSEVELKVPFKVSFRLKGKDVVVDIQR-KHLKVGLKGQ--------PP---------I-IDGELYNEVKVEESSW 62 (87)
T ss_pred ccEeecCEEEEEEECCCCCCccceEEEEEEec-CEEEEEECCC--------ce---------E-EeCcccCcccccccEE
Confidence 3567888899999996 4 788999999997 5888863210 11 0 1125777889887776
Q ss_pred EEeCC-EEEEEEeccCC
Q 043288 129 SIEDG-VLTVTVPKEEV 144 (156)
Q Consensus 129 ~~~nG-vL~I~lPK~~~ 144 (156)
.+++| .|.|+|-|...
T Consensus 63 tled~~~l~i~L~K~~~ 79 (87)
T cd06492 63 LIEDGKVVTVNLEKINK 79 (87)
T ss_pred EEeCCCEEEEEEEECCC
Confidence 78886 89999999854
No 41
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=94.06 E-value=1.3 Score=30.30 Aligned_cols=80 Identities=11% Similarity=0.251 Sum_probs=58.3
Q ss_pred cceeEEEECCCeEEEEEEcC-CC-CCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCc
Q 043288 48 NTRMDWKETPEAHVFKVDLP-GL-TKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQ 125 (156)
Q Consensus 48 ~p~~di~e~~~~~~i~~~lP-G~-~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~ 125 (156)
...+.+.++.+...|++.+| |. +..+|.|.+.. +.|.|.-... ++...+ +.- .|+..|+++.
T Consensus 4 ~e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~-~~l~v~~~~~-----~~~~~~--------i~G--~L~~~V~~de 67 (102)
T cd06495 4 RENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQS-SSIRVSVRDG-----GGEKVL--------MEG--EFTHKINTEN 67 (102)
T ss_pred CCceEEEeECCeEEEEEECCCCCccceEEEEEEEc-CEEEEEEecC-----CCCceE--------EeC--cccCcccCcc
Confidence 35788999999999999999 64 57999999997 5888875310 000001 111 5778889887
Q ss_pred eEEEEeCC-EEEEEEeccC
Q 043288 126 VRASIEDG-VLTVTVPKEE 143 (156)
Q Consensus 126 i~A~~~nG-vL~I~lPK~~ 143 (156)
..=.+++| .|.|+|-|..
T Consensus 68 s~Wtled~~~l~I~L~K~~ 86 (102)
T cd06495 68 SLWSLEPGKCVLLSLSKCS 86 (102)
T ss_pred ceEEEeCCCEEEEEEEECC
Confidence 77778886 5899999975
No 42
>PF14913 DPCD: DPCD protein family
Probab=93.41 E-value=0.82 Score=34.70 Aligned_cols=79 Identities=14% Similarity=0.345 Sum_probs=59.8
Q ss_pred ccccceeEEEECCCeEEEEE-EcCCCCCCCeEEEEeCC-cEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCC--
Q 043288 45 AIVNTRMDWKETPEAHVFKV-DLPGLTKEDVKLEIEDH-RVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPEN-- 120 (156)
Q Consensus 45 ~~~~p~~di~e~~~~~~i~~-~lPG~~~edi~v~v~~g-~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~-- 120 (156)
++.+|-+-=..|...|.-+| +||. .++-.+|+++++ +.++|+... ..|.+.|.+|+-
T Consensus 83 Ss~nP~~~r~dTk~~fqWRIRNLPY-P~dvYsVtvd~~~r~ivvRTtN------------------KKYyKk~~IPDl~R 143 (194)
T PF14913_consen 83 SSSNPIFVRRDTKTSFQWRIRNLPY-PKDVYSVTVDEDERCIVVRTTN------------------KKYYKKFSIPDLDR 143 (194)
T ss_pred cCCCCEEEEEcCccceEEEEccCCC-CccceEEEEcCCCcEEEEECcC------------------ccceeEecCCcHHh
Confidence 44456666677888999999 7886 778889999854 578887331 126688999952
Q ss_pred ----CccCceEEEEeCCEEEEEEecc
Q 043288 121 ----GKIDQVRASIEDGVLTVTVPKE 142 (156)
Q Consensus 121 ----vd~~~i~A~~~nGvL~I~lPK~ 142 (156)
.+.+.++..+.|..|.|+..|-
T Consensus 144 ~~l~l~~~~ls~~h~nNTLIIsYkKP 169 (194)
T PF14913_consen 144 CGLPLEQSALSFAHQNNTLIISYKKP 169 (194)
T ss_pred hCCCcchhhceeeeecCeEEEEecCc
Confidence 4677799999999999999774
No 43
>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]
Probab=87.99 E-value=2.5 Score=31.64 Aligned_cols=78 Identities=9% Similarity=0.213 Sum_probs=57.4
Q ss_pred cceeEEEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceE
Q 043288 48 NTRMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVR 127 (156)
Q Consensus 48 ~p~~di~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~ 127 (156)
.|.+.+.+..+.+++++.++.. .+..|.++. ..|+++|+-..+. ..+...|.|=..||+++.+
T Consensus 7 ~p~v~Waqr~~~vyltv~Ved~--~d~~v~~e~-~~l~fs~k~~~d~--------------~~~~~~ief~~eIdpe~sk 69 (180)
T KOG3158|consen 7 PPEVKWAQRRDLVYLTVCVEDA--KDVHVNLEP-SKLTFSCKSGADN--------------HKYENEIEFFDEIDPEKSK 69 (180)
T ss_pred CCcchhhhhcCeEEEEEEeccC--ccceeeccc-cEEEEEeccCCCc--------------eeeEEeeehhhhcCHhhcc
Confidence 5778889999999999999864 455666665 5899998864221 1255678888899999877
Q ss_pred EEEeCCEEEEEEeccC
Q 043288 128 ASIEDGVLTVTVPKEE 143 (156)
Q Consensus 128 A~~~nGvL~I~lPK~~ 143 (156)
.+-. +.....++++.
T Consensus 70 ~k~~-~r~if~i~~K~ 84 (180)
T KOG3158|consen 70 HKRT-SRSIFCILRKK 84 (180)
T ss_pred cccc-ceEEEEEEEcc
Confidence 6666 66666666654
No 44
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=85.83 E-value=2.2 Score=28.20 Aligned_cols=34 Identities=24% Similarity=0.349 Sum_probs=30.0
Q ss_pred EEEEEEECCCCCccCceEEEEeCCEEEEEEeccCC
Q 043288 110 KFLRRFRLPENGKIDQVRASIEDGVLTVTVPKEEV 144 (156)
Q Consensus 110 ~f~r~i~lP~~vd~~~i~A~~~nGvL~I~lPK~~~ 144 (156)
.|.-.+.|| +++.+.|+..+.+|.|+|+.-+...
T Consensus 9 ~~~v~adlP-G~~kedI~V~v~~~~L~I~ger~~~ 42 (87)
T cd06482 9 NVLASVDVC-GFEPDQVKVKVKDGKVQVSAERENR 42 (87)
T ss_pred EEEEEEECC-CCCHHHeEEEEECCEEEEEEEEecc
Confidence 477789999 8999999999999999999987653
No 45
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=84.66 E-value=12 Score=26.67 Aligned_cols=83 Identities=16% Similarity=0.215 Sum_probs=50.5
Q ss_pred ceeEEEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEE
Q 043288 49 TRMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRA 128 (156)
Q Consensus 49 p~~di~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A 128 (156)
..+.|...++ ..+++.. ..+.++++.++ +.|.|+.+...... ...+..... ...-.-.+.||.....++++.
T Consensus 66 ~~V~I~~~~~-~~i~v~~---~~k~~~~~~~~-~~L~I~~~~~~~~~--~~~~~~~~~-~~~~~i~I~lP~~~~l~~i~i 137 (166)
T PF13349_consen 66 GDVEIKPSDD-DKIKVEY---NGKKPEISVEG-GTLTIKSKDRESFF--FKGFNFNNS-DNKSKITIYLPKDYKLDKIDI 137 (166)
T ss_pred eeEEEEEcCC-ccEEEEE---cCcEEEEEEcC-CEEEEEEecccccc--cceEEEccc-CCCcEEEEEECCCCceeEEEE
Confidence 4466666443 3344444 21268888887 59999877221110 011111111 234557789999998889999
Q ss_pred EEeCCEEEEEE
Q 043288 129 SIEDGVLTVTV 139 (156)
Q Consensus 129 ~~~nGvL~I~l 139 (156)
...+|-++|.=
T Consensus 138 ~~~~G~i~i~~ 148 (166)
T PF13349_consen 138 KTSSGDITIED 148 (166)
T ss_pred EeccccEEEEc
Confidence 99999888753
No 46
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=82.33 E-value=7.7 Score=25.39 Aligned_cols=35 Identities=20% Similarity=0.248 Sum_probs=30.5
Q ss_pred EEEEEEECCCCCccCceEEEEeCCEEEEEEeccCCC
Q 043288 110 KFLRRFRLPENGKIDQVRASIEDGVLTVTVPKEEVK 145 (156)
Q Consensus 110 ~f~r~i~lP~~vd~~~i~A~~~nGvL~I~lPK~~~~ 145 (156)
.|.-.+.|| ++..+.|+-.++++.|+|+..+....
T Consensus 12 ~~~v~~~lP-G~~kedi~v~~~~~~L~I~g~~~~~~ 46 (90)
T cd06470 12 NYRITLAVA-GFSEDDLEIEVENNQLTVTGKKADEE 46 (90)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEcccc
Confidence 588889999 79999999999999999998876543
No 47
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=79.97 E-value=6.9 Score=25.84 Aligned_cols=37 Identities=27% Similarity=0.404 Sum_probs=28.4
Q ss_pred CeEEEEEEcC-CCCCCCeEEEEeCCcEEEEEEEEecccc
Q 043288 58 EAHVFKVDLP-GLTKEDVKLEIEDHRVLQITADRNVERE 95 (156)
Q Consensus 58 ~~~~i~~~lP-G~~~edi~v~v~~g~~L~I~g~~~~~~~ 95 (156)
..|.-.+.|| +++.+.++..+.+| .|+|+.-+.....
T Consensus 55 ~~f~r~~~lP~~vd~~~i~a~~~~G-vL~I~~pk~~~~~ 92 (102)
T PF00011_consen 55 GSFERSIRLPEDVDPDKIKASYENG-VLTITIPKKEEEE 92 (102)
T ss_dssp EEEEEEEE-STTB-GGG-EEEETTS-EEEEEEEBSSSCT
T ss_pred ceEEEEEcCCCcCCcceEEEEecCC-EEEEEEEcccccc
Confidence 4677789999 78999999999987 9999998876553
No 48
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=79.46 E-value=6.6 Score=25.54 Aligned_cols=33 Identities=15% Similarity=0.192 Sum_probs=28.9
Q ss_pred EEEEEEECCCCCccCceEEEEeCCEEEEEEeccC
Q 043288 110 KFLRRFRLPENGKIDQVRASIEDGVLTVTVPKEE 143 (156)
Q Consensus 110 ~f~r~i~lP~~vd~~~i~A~~~nGvL~I~lPK~~ 143 (156)
.|.-.+.|| ++.++.|+..++||.|+|+.-+..
T Consensus 8 ~y~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~~ 40 (83)
T cd06476 8 KYQVFLDVC-HFTPDEITVRTVDNLLEVSARHPQ 40 (83)
T ss_pred eEEEEEEcC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 477889999 899999999999999999997643
No 49
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=79.38 E-value=1.5 Score=35.45 Aligned_cols=84 Identities=18% Similarity=0.093 Sum_probs=63.1
Q ss_pred cccceeEEEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCc
Q 043288 46 IVNTRMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQ 125 (156)
Q Consensus 46 ~~~p~~di~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~ 125 (156)
....+.++.+|.....|-+.-|-+..++|++.+.. |.|.|+-+...-. --+.-.+.|-..|+++.
T Consensus 174 ~~~i~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e~-NTL~I~~q~~~~~--------------~~~~~~~~Ly~ev~P~~ 238 (368)
T COG5091 174 KMEIAYDFSETSDTAIIFIYRPPVGDEQVSPVLEG-NTLSISYQPRRLR--------------LWNDITISLYKEVYPDI 238 (368)
T ss_pred cceeeeeccccceeEEEEEecCCCCccccceeecC-Ccceeeeeccccc--------------hHHHhhhhhhhhcCcch
Confidence 33467888899999999999999999999999996 7999996643211 11445667778888888
Q ss_pred eEEEEeCCEEEEEEeccCC
Q 043288 126 VRASIEDGVLTVTVPKEEV 144 (156)
Q Consensus 126 i~A~~~nGvL~I~lPK~~~ 144 (156)
.+-+.--.++.|++-|...
T Consensus 239 ~s~k~fsK~~e~~l~KV~~ 257 (368)
T COG5091 239 RSIKSFSKRVEVHLRKVEM 257 (368)
T ss_pred hhhhhcchhheehhhhhhh
Confidence 7777656788888877653
No 50
>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]
Probab=78.62 E-value=24 Score=26.51 Aligned_cols=82 Identities=21% Similarity=0.340 Sum_probs=57.7
Q ss_pred cccccceeEEEECCCeEEEEEEcC-CC-CCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCC
Q 043288 44 SAIVNTRMDWKETPEAHVFKVDLP-GL-TKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENG 121 (156)
Q Consensus 44 ~~~~~p~~di~e~~~~~~i~~~lP-G~-~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~v 121 (156)
.+...+...+.+|=..+.|.|.+| |+ ...+|.|.+.. +.|.|.-+... -++ .=.|...|
T Consensus 14 ng~~~~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~-~hI~V~~kg~~-------~il-----------dG~L~~~v 74 (179)
T KOG2265|consen 14 NGADEEKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQS-KHIKVGLKGQP-------PIL-----------DGELSHSV 74 (179)
T ss_pred CCccccceeeeeehhheEEEeecCCCCcccceEEEEeee-eEEEEecCCCC-------cee-----------cCcccccc
Confidence 344457788999999999999887 88 78999999986 57777633211 011 11456678
Q ss_pred ccCceEEEEeCCEEEEEEeccCC
Q 043288 122 KIDQVRASIEDGVLTVTVPKEEV 144 (156)
Q Consensus 122 d~~~i~A~~~nGvL~I~lPK~~~ 144 (156)
+.+...=.+++|.+.|.+-++..
T Consensus 75 k~des~WtiEd~k~i~i~l~K~~ 97 (179)
T KOG2265|consen 75 KVDESTWTIEDGKMIVILLKKSN 97 (179)
T ss_pred ccccceEEecCCEEEEEEeeccc
Confidence 88877777899988777776543
No 51
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=78.56 E-value=5.7 Score=25.93 Aligned_cols=33 Identities=9% Similarity=0.069 Sum_probs=29.5
Q ss_pred EEEEEEECCCCCccCceEEEEeCCEEEEEEeccC
Q 043288 110 KFLRRFRLPENGKIDQVRASIEDGVLTVTVPKEE 143 (156)
Q Consensus 110 ~f~r~i~lP~~vd~~~i~A~~~nGvL~I~lPK~~ 143 (156)
.|.-.+.|| +++++.|+-.+++|.|+|+.-+..
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v~~~~L~I~ge~~~ 40 (83)
T cd06477 8 MFQILLDVV-QFRPEDIIIQVFEGWLLIKGQHGV 40 (83)
T ss_pred eEEEEEEcC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 477889999 899999999999999999998754
No 52
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=78.31 E-value=6.8 Score=25.59 Aligned_cols=32 Identities=9% Similarity=0.126 Sum_probs=28.5
Q ss_pred EEEEEEECCCCCccCceEEEEeCCEEEEEEecc
Q 043288 110 KFLRRFRLPENGKIDQVRASIEDGVLTVTVPKE 142 (156)
Q Consensus 110 ~f~r~i~lP~~vd~~~i~A~~~nGvL~I~lPK~ 142 (156)
.|.-.+.|| +++++.|+....+|.|+|+.-+.
T Consensus 11 ~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~ 42 (86)
T cd06497 11 KFTIYLDVK-HFSPEDLTVKVLDDYVEIHGKHS 42 (86)
T ss_pred EEEEEEECC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 478889999 89999999999999999998654
No 53
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=77.12 E-value=8.2 Score=24.96 Aligned_cols=32 Identities=6% Similarity=0.147 Sum_probs=28.6
Q ss_pred EEEEEEECCCCCccCceEEEEeCCEEEEEEecc
Q 043288 110 KFLRRFRLPENGKIDQVRASIEDGVLTVTVPKE 142 (156)
Q Consensus 110 ~f~r~i~lP~~vd~~~i~A~~~nGvL~I~lPK~ 142 (156)
.|.-.+.|| +++++.|+-.+.+|.|+|+.-+.
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~ 39 (83)
T cd06478 8 RFSVNLDVK-HFSPEELSVKVLGDFVEIHGKHE 39 (83)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 478889999 99999999999999999999654
No 54
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=76.75 E-value=7.4 Score=25.27 Aligned_cols=33 Identities=6% Similarity=0.090 Sum_probs=29.2
Q ss_pred EEEEEEECCCCCccCceEEEEeCCEEEEEEeccC
Q 043288 110 KFLRRFRLPENGKIDQVRASIEDGVLTVTVPKEE 143 (156)
Q Consensus 110 ~f~r~i~lP~~vd~~~i~A~~~nGvL~I~lPK~~ 143 (156)
.|.-.+.|| +++++.|+-..++|.|+|+.-|..
T Consensus 9 ~~~v~~dlp-G~~pedi~V~v~~~~L~I~ger~~ 41 (81)
T cd06479 9 TYQFAVDVS-DFSPEDIIVTTSNNQIEVHAEKLA 41 (81)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEec
Confidence 477889999 899999999999999999987653
No 55
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=76.69 E-value=4.7 Score=26.39 Aligned_cols=30 Identities=30% Similarity=0.433 Sum_probs=25.7
Q ss_pred CeEEEEEEcCCCCCCCeEEEEeCCcEEEEEE
Q 043288 58 EAHVFKVDLPGLTKEDVKLEIEDHRVLQITA 88 (156)
Q Consensus 58 ~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g 88 (156)
+.|.-.+.||.+..+.++-++.+| +|+|+-
T Consensus 62 g~f~r~~~lp~v~~~~i~A~~~dG-vL~I~l 91 (93)
T cd06471 62 GSFSRSFYLPNVDEEEIKAKYENG-VLKITL 91 (93)
T ss_pred cEEEEEEECCCCCHHHCEEEEECC-EEEEEE
Confidence 457777889999999999999997 999974
No 56
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=76.15 E-value=5.5 Score=25.13 Aligned_cols=32 Identities=25% Similarity=0.372 Sum_probs=28.0
Q ss_pred CCCeEEEEEEcC-CCCCCCeEEEEeCCcEEEEEE
Q 043288 56 TPEAHVFKVDLP-GLTKEDVKLEIEDHRVLQITA 88 (156)
Q Consensus 56 ~~~~~~i~~~lP-G~~~edi~v~v~~g~~L~I~g 88 (156)
....|.-.+.|| +++.+.++..+.+| .|+|+.
T Consensus 54 ~~~~f~r~~~LP~~vd~~~i~a~~~~G-~L~I~~ 86 (88)
T cd06464 54 SYGSFSRSFRLPEDVDPDKIKASLENG-VLTITL 86 (88)
T ss_pred eCcEEEEEEECCCCcCHHHcEEEEeCC-EEEEEE
Confidence 457899999999 78999999999997 999985
No 57
>PRK10743 heat shock protein IbpA; Provisional
Probab=76.03 E-value=7.7 Score=27.81 Aligned_cols=32 Identities=9% Similarity=0.160 Sum_probs=26.6
Q ss_pred EEEEEECCCCCccCceEEEEeCCEEEEEEeccC
Q 043288 111 FLRRFRLPENGKIDQVRASIEDGVLTVTVPKEE 143 (156)
Q Consensus 111 f~r~i~lP~~vd~~~i~A~~~nGvL~I~lPK~~ 143 (156)
|.-...|| +++.+.|+..+++|+|+|..-+..
T Consensus 47 ~~v~aelP-Gv~kedi~V~v~~~~LtI~ge~~~ 78 (137)
T PRK10743 47 YRIAIAVA-GFAESELEITAQDNLLVVKGAHAD 78 (137)
T ss_pred EEEEEECC-CCCHHHeEEEEECCEEEEEEEECc
Confidence 44447888 899999999999999999997654
No 58
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=75.04 E-value=5.5 Score=26.08 Aligned_cols=31 Identities=29% Similarity=0.423 Sum_probs=27.3
Q ss_pred CCeEEEEEEcC-CCCCCCeEEEEeCCcEEEEEE
Q 043288 57 PEAHVFKVDLP-GLTKEDVKLEIEDHRVLQITA 88 (156)
Q Consensus 57 ~~~~~i~~~lP-G~~~edi~v~v~~g~~L~I~g 88 (156)
...|.-.+.|| +++.+.++-.+.+| +|+|+-
T Consensus 59 ~g~f~r~i~LP~~v~~~~i~A~~~nG-vL~I~l 90 (92)
T cd06472 59 SGRFVRRFRLPENADADEVKAFLENG-VLTVTV 90 (92)
T ss_pred ccEEEEEEECCCCCCHHHCEEEEECC-EEEEEe
Confidence 46899999999 78999999999997 999974
No 59
>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]
Probab=73.67 E-value=24 Score=28.28 Aligned_cols=84 Identities=17% Similarity=0.249 Sum_probs=66.9
Q ss_pred ccceeEEEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCce
Q 043288 47 VNTRMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQV 126 (156)
Q Consensus 47 ~~p~~di~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i 126 (156)
..-+-|+.++++...|.+..-|.-++.-.|..+. ..|.|+-..... -.+|...+.|=.-|++++.
T Consensus 213 ~~cR~Dwhqt~~~Vti~VY~k~~lpe~s~iean~-~~l~V~ivf~~g--------------na~fd~d~kLwgvvnve~s 277 (320)
T KOG1667|consen 213 VKCRHDWHQTNGFVTINVYAKGALPETSNIEANG-TTLHVSIVFGFG--------------NASFDLDYKLWGVVNVEES 277 (320)
T ss_pred ccchhhhhhcCCeEEEEEEeccCCcccceeeeCC-eEEEEEEEecCC--------------Cceeeccceeeeeechhhc
Confidence 4567889999999999999999988888888875 578877554321 1137777777777999999
Q ss_pred EEEEeCCEEEEEEeccCCC
Q 043288 127 RASIEDGVLTVTVPKEEVK 145 (156)
Q Consensus 127 ~A~~~nGvL~I~lPK~~~~ 145 (156)
++.+-.--+.|+|+|+++.
T Consensus 278 ~v~m~~tkVEIsl~k~ep~ 296 (320)
T KOG1667|consen 278 SVVMGETKVEISLKKAEPG 296 (320)
T ss_pred eEEeecceEEEEEeccCCC
Confidence 9999889999999998764
No 60
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=73.58 E-value=8.6 Score=24.65 Aligned_cols=34 Identities=24% Similarity=0.297 Sum_probs=30.2
Q ss_pred EEEEEEECCCCCccCceEEEEeCCEEEEEEeccCC
Q 043288 110 KFLRRFRLPENGKIDQVRASIEDGVLTVTVPKEEV 144 (156)
Q Consensus 110 ~f~r~i~lP~~vd~~~i~A~~~nGvL~I~lPK~~~ 144 (156)
.|.-.+.|| ++.++.|+-.++++.|+|+.-+...
T Consensus 8 ~~~v~~dlp-G~~~edI~v~v~~~~L~I~g~~~~~ 41 (83)
T cd06526 8 KFQVTLDVK-GFKPEELKVKVSDNKLVVEGKHEER 41 (83)
T ss_pred eEEEEEECC-CCCHHHcEEEEECCEEEEEEEEeee
Confidence 588899999 6999999999999999999987653
No 61
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=73.03 E-value=8.9 Score=25.55 Aligned_cols=30 Identities=23% Similarity=0.317 Sum_probs=25.8
Q ss_pred CeEEEEEEcC-CCCCCCeEEEEe-CCcEEEEEE
Q 043288 58 EAHVFKVDLP-GLTKEDVKLEIE-DHRVLQITA 88 (156)
Q Consensus 58 ~~~~i~~~lP-G~~~edi~v~v~-~g~~L~I~g 88 (156)
..|.=.+.|| +++.+.|+-.+. +| .|+|.+
T Consensus 58 r~F~R~~~LP~~Vd~~~v~s~l~~dG-vL~Iea 89 (91)
T cd06480 58 KNFTKKIQLPPEVDPVTVFASLSPEG-LLIIEA 89 (91)
T ss_pred EEEEEEEECCCCCCchhEEEEeCCCC-eEEEEc
Confidence 5677788999 899999999998 76 999985
No 62
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=72.60 E-value=17 Score=22.26 Aligned_cols=42 Identities=17% Similarity=0.279 Sum_probs=32.4
Q ss_pred ceeEEE-ECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEE
Q 043288 49 TRMDWK-ETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADR 90 (156)
Q Consensus 49 p~~di~-e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~ 90 (156)
.++.+. -..+.|.|++..+|+..-.-+|.+..|....|+..-
T Consensus 25 tp~~~~~l~~G~~~v~v~~~Gy~~~~~~v~v~~~~~~~v~~~L 67 (71)
T PF08308_consen 25 TPLTLKDLPPGEHTVTVEKPGYEPYTKTVTVKPGETTTVNVTL 67 (71)
T ss_pred CcceeeecCCccEEEEEEECCCeeEEEEEEECCCCEEEEEEEE
Confidence 345555 457799999999999998888888866677777653
No 63
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=72.41 E-value=12 Score=24.32 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=29.3
Q ss_pred EEEEEEECCCCCccCceEEEEeCCEEEEEEeccC
Q 043288 110 KFLRRFRLPENGKIDQVRASIEDGVLTVTVPKEE 143 (156)
Q Consensus 110 ~f~r~i~lP~~vd~~~i~A~~~nGvL~I~lPK~~ 143 (156)
.|.-.+.|| +++++.|+-.+.++.|+|+.-+..
T Consensus 11 ~~~v~~dlP-G~~~edi~V~v~~~~L~I~g~~~~ 43 (86)
T cd06475 11 RWKVSLDVN-HFAPEELVVKTKDGVVEITGKHEE 43 (86)
T ss_pred eEEEEEECC-CCCHHHEEEEEECCEEEEEEEECc
Confidence 488889999 999999999999999999997653
No 64
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=72.23 E-value=11 Score=24.58 Aligned_cols=33 Identities=15% Similarity=0.218 Sum_probs=29.0
Q ss_pred EEEEEEECCCCCccCceEEEEeCCEEEEEEeccC
Q 043288 110 KFLRRFRLPENGKIDQVRASIEDGVLTVTVPKEE 143 (156)
Q Consensus 110 ~f~r~i~lP~~vd~~~i~A~~~nGvL~I~lPK~~ 143 (156)
.|.-.+.|| ++.++.|+..++++.|+|+.-+..
T Consensus 8 ~~~v~~dlp-G~~~edI~V~v~~~~L~I~g~~~~ 40 (87)
T cd06481 8 GFSLKLDVR-GFSPEDLSVRVDGRKLVVTGKREK 40 (87)
T ss_pred eEEEEEECC-CCChHHeEEEEECCEEEEEEEEee
Confidence 477889999 899999999999999999997653
No 65
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=70.41 E-value=14 Score=23.99 Aligned_cols=32 Identities=9% Similarity=0.193 Sum_probs=28.3
Q ss_pred EEEEEEECCCCCccCceEEEEeCCEEEEEEecc
Q 043288 110 KFLRRFRLPENGKIDQVRASIEDGVLTVTVPKE 142 (156)
Q Consensus 110 ~f~r~i~lP~~vd~~~i~A~~~nGvL~I~lPK~ 142 (156)
.|.-.+.+| +++++.|+..+.++.|+|..-+.
T Consensus 8 ~~~v~~dlp-G~~~edi~V~v~~~~L~I~g~~~ 39 (84)
T cd06498 8 KFSVNLDVK-HFSPEELKVKVLGDFIEIHGKHE 39 (84)
T ss_pred eEEEEEECC-CCCHHHeEEEEECCEEEEEEEEc
Confidence 478889998 89999999999999999999543
No 66
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=68.57 E-value=14 Score=26.74 Aligned_cols=32 Identities=19% Similarity=0.225 Sum_probs=26.6
Q ss_pred EEEEEECCCCCccCceEEEEeCCEEEEEEeccC
Q 043288 111 FLRRFRLPENGKIDQVRASIEDGVLTVTVPKEE 143 (156)
Q Consensus 111 f~r~i~lP~~vd~~~i~A~~~nGvL~I~lPK~~ 143 (156)
|.-.+.|| +++.+.|+-.+++|.|+|+.-+..
T Consensus 45 y~v~adlP-Gv~kedi~V~v~~~~LtI~ge~~~ 76 (142)
T PRK11597 45 YRITLALA-GFRQEDLDIQLEGTRLTVKGTPEQ 76 (142)
T ss_pred EEEEEEeC-CCCHHHeEEEEECCEEEEEEEEcc
Confidence 44557888 899999999999999999997653
No 67
>PF12992 DUF3876: Domain of unknown function, B. Theta Gene description (DUF3876); InterPro: IPR024452 This bacterial family of conserved proteins has no known function.
Probab=68.53 E-value=21 Score=24.07 Aligned_cols=39 Identities=13% Similarity=0.050 Sum_probs=30.1
Q ss_pred cceeEEEECCCeEEEEEEcCCC-----CCCCeEEEEeCCcEEEEE
Q 043288 48 NTRMDWKETPEAHVFKVDLPGL-----TKEDVKLEIEDHRVLQIT 87 (156)
Q Consensus 48 ~p~~di~e~~~~~~i~~~lPG~-----~~edi~v~v~~g~~L~I~ 87 (156)
.|++.|++++++|.|.+--+.- .++...|.-++| .+.|.
T Consensus 25 ~P~v~I~r~g~~Y~vti~~~~~~~~~~~p~tY~i~~~~g-~~fI~ 68 (95)
T PF12992_consen 25 KPDVTIYRNGGSYKVTITYRSGYTGRAKPETYPIQEEDG-NLFIE 68 (95)
T ss_pred CCCEEEEECCCeEEEEEEEEcCcCCcccceEEEEEEeCC-EEEEe
Confidence 5899999999999999976643 667777777776 55554
No 68
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=68.08 E-value=19 Score=25.76 Aligned_cols=36 Identities=17% Similarity=0.222 Sum_probs=27.3
Q ss_pred CeEEEEEEcC-CCCCCCeEEEEeCCcEEEEEEEEeccc
Q 043288 58 EAHVFKVDLP-GLTKEDVKLEIEDHRVLQITADRNVER 94 (156)
Q Consensus 58 ~~~~i~~~lP-G~~~edi~v~v~~g~~L~I~g~~~~~~ 94 (156)
..|.-.+.|| +++.+.+.-++.|| +|+|+-.+....
T Consensus 100 ~~f~r~~~Lp~~v~~~~~~A~~~nG-vL~I~lpk~~~~ 136 (146)
T COG0071 100 GEFERTFRLPEKVDPEVIKAKYKNG-LLTVTLPKAEPE 136 (146)
T ss_pred eeEEEEEECcccccccceeeEeeCc-EEEEEEeccccc
Confidence 4566777788 57777889999987 999987765543
No 69
>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]
Probab=65.04 E-value=34 Score=26.00 Aligned_cols=78 Identities=13% Similarity=0.253 Sum_probs=54.9
Q ss_pred eEEEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEE-ECCCCCccCceEEE
Q 043288 51 MDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRF-RLPENGKIDQVRAS 129 (156)
Q Consensus 51 ~di~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i-~lP~~vd~~~i~A~ 129 (156)
+-|-++++...+.+.|-|+..+++++.+.. +.|-+.-..-+ +. +|.-.+ .|-..+++++-+-.
T Consensus 77 ygWDQs~kfVK~yItL~GV~eenVqv~ftp-~Sldl~v~dlq-----GK----------~y~~~vnnLlk~I~vEks~~k 140 (224)
T KOG3260|consen 77 YGWDQSNKFVKMYITLEGVDEENVQVEFTP-MSLDLKVHDLQ-----GK----------NYRMIVNNLLKPISVEKSSKK 140 (224)
T ss_pred cCccccCCeeEEEEEeecccccceeEEecc-cceeeeeeecC-----Cc----------ceeeehhhhccccChhhcccc
Confidence 456677888899999999999999999997 57766644221 11 133223 34456888887878
Q ss_pred EeCCEEEEEEeccCC
Q 043288 130 IEDGVLTVTVPKEEV 144 (156)
Q Consensus 130 ~~nGvL~I~lPK~~~ 144 (156)
.+-....|.+.|.+.
T Consensus 141 vKtd~v~I~~kkVe~ 155 (224)
T KOG3260|consen 141 VKTDTVLILCKKVEN 155 (224)
T ss_pred cccceEEEeehhhhc
Confidence 888888888866543
No 70
>PF04972 BON: BON domain; InterPro: IPR007055 The BON domain is typically ~60 residues long and has an alpha/beta predicted fold. There is a conserved glycine residue and several hydrophobic regions. This pattern of conservation is more suggestive of a binding or structural function rather than a catalytic function. Most proteobacteria seem to possess one or two BON-containing proteins, typically of the OsmY-type proteins; outside of this group the distribution is more disparate. The OsmY protein is an Escherichia coli 20 kDa outer membrane or periplasmic protein that is expressed in response to a variety of stress conditions, in particular, helping to provide protection against osmotic shock. One hypothesis is that OsmY prevents shrinkage of the cytoplasmic compartment by contacting the phospholipid interfaces surrounding the periplasmic space. The domain architecture of two BON domains alone suggests that these domains contact the surfaces of phospholipids, with each domain contacting a membrane [].; PDB: 2L26_A 2KGS_A 2KSM_A.
Probab=64.61 E-value=14 Score=22.16 Aligned_cols=25 Identities=16% Similarity=0.429 Sum_probs=19.7
Q ss_pred CCCCCCCeEEEEeCCcEEEEEEEEec
Q 043288 67 PGLTKEDVKLEIEDHRVLQITADRNV 92 (156)
Q Consensus 67 PG~~~edi~v~v~~g~~L~I~g~~~~ 92 (156)
++++..+|.|.+.+| .++|+|....
T Consensus 12 ~~~~~~~i~v~v~~g-~v~L~G~v~s 36 (64)
T PF04972_consen 12 PWLPDSNISVSVENG-VVTLSGEVPS 36 (64)
T ss_dssp -CTT-TTEEEEEECT-EEEEEEEESS
T ss_pred cccCCCeEEEEEECC-EEEEEeeCcH
Confidence 367777999999986 9999999754
No 71
>KOG3591 consensus Alpha crystallins [Posttranslational modification, protein turnover, chaperones]
Probab=64.21 E-value=15 Score=27.44 Aligned_cols=32 Identities=25% Similarity=0.322 Sum_probs=26.0
Q ss_pred EEEcC-CCCCCCeEEEEeCCcEEEEEEEEeccc
Q 043288 63 KVDLP-GLTKEDVKLEIEDHRVLQITADRNVER 94 (156)
Q Consensus 63 ~~~lP-G~~~edi~v~v~~g~~L~I~g~~~~~~ 94 (156)
+..|| |++++.|.-.+..+.+|+|+|.+....
T Consensus 120 ~y~LP~~vdp~~V~S~LS~dGvLtI~ap~~~~~ 152 (173)
T KOG3591|consen 120 KYLLPEDVDPTSVTSTLSSDGVLTIEAPKPPPK 152 (173)
T ss_pred EecCCCCCChhheEEeeCCCceEEEEccCCCCc
Confidence 45688 999999999998445999999887654
No 72
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=63.45 E-value=28 Score=21.55 Aligned_cols=33 Identities=24% Similarity=0.387 Sum_probs=27.9
Q ss_pred CeEEEEEEcCC-CCCCCeEEEEeCCcEEEEEEEEe
Q 043288 58 EAHVFKVDLPG-LTKEDVKLEIEDHRVLQITADRN 91 (156)
Q Consensus 58 ~~~~i~~~lPG-~~~edi~v~v~~g~~L~I~g~~~ 91 (156)
+.|.+.++||+ +++++.+.++.+| .|.|+-.+.
T Consensus 36 ~~~~~~~~l~~~I~~e~~~~~~~~~-~l~i~L~K~ 69 (78)
T cd06469 36 PPYLFELDLAAPIDDEKSSAKIGNG-VLVFTLVKK 69 (78)
T ss_pred CCEEEEEeCcccccccccEEEEeCC-EEEEEEEeC
Confidence 56899999995 7999999999986 899986664
No 73
>PF01954 DUF104: Protein of unknown function DUF104; InterPro: IPR008203 This family includes short archaebacterial proteins of unknown function. Archaeoglobus fulgidus has twelve copies of this protein, with several being clustered together in the genome.; PDB: 2NWT_A.
Probab=62.80 E-value=7.2 Score=23.99 Aligned_cols=17 Identities=35% Similarity=0.489 Sum_probs=11.9
Q ss_pred CceEEEEeCCEEEEEEe
Q 043288 124 DQVRASIEDGVLTVTVP 140 (156)
Q Consensus 124 ~~i~A~~~nGvL~I~lP 140 (156)
+.|+|.|+||+|.--=|
T Consensus 3 ~~I~aiYe~GvlkPl~~ 19 (60)
T PF01954_consen 3 KVIEAIYENGVLKPLEP 19 (60)
T ss_dssp --EEEEEETTEEEECS-
T ss_pred ceEEEEEECCEEEECCC
Confidence 45899999999975533
No 74
>PRK05518 rpl6p 50S ribosomal protein L6P; Reviewed
Probab=60.55 E-value=54 Score=24.63 Aligned_cols=46 Identities=33% Similarity=0.565 Sum_probs=31.5
Q ss_pred CCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEEEEeCCEEEEEEe
Q 043288 70 TKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDGVLTVTVP 140 (156)
Q Consensus 70 ~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A~~~nGvL~I~lP 140 (156)
=|++++|++++ +.++|+|.+ |...+.+.-+ .++...++|.|.|...
T Consensus 12 IP~~V~v~i~~-~~v~VkGp~------------------G~L~~~~~~~------~v~i~~~~~~i~v~~~ 57 (180)
T PRK05518 12 IPEGVTVEIEG-LVVTVKGPK------------------GELTRDFWYP------GVTISVEDGKVVIETE 57 (180)
T ss_pred cCCCCEEEEEC-CEEEEECCC------------------eEEEEEecCC------cEEEEEECCEEEEEEC
Confidence 36789999997 699999874 3344444322 4555678888888855
No 75
>TIGR03653 arch_L6P archaeal ribosomal protein L6P. Members of this protein family are the archaeal ribosomal protein L6P. The top-scoring proteins not selected by this model are eukaryotic cytosolic ribosomal protein L9. Bacterial ribosomal protein L6 scores lower and is described by a distinct model.
Probab=59.20 E-value=65 Score=23.94 Aligned_cols=45 Identities=22% Similarity=0.443 Sum_probs=31.0
Q ss_pred CCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEEEEeCCEEEEEEe
Q 043288 71 KEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDGVLTVTVP 140 (156)
Q Consensus 71 ~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A~~~nGvL~I~lP 140 (156)
|++++|++++ +.++|+|.+ |...+.+. |. .+....+++.|.|..+
T Consensus 7 P~~V~v~i~~-~~i~vkGp~------------------G~L~~~~~-~~-----~v~i~~~~~~i~v~~~ 51 (170)
T TIGR03653 7 PEGVSVTIEG-NIVTVKGPK------------------GEVTRELW-YP-----GIEISVEDGKVVIETD 51 (170)
T ss_pred CCCCEEEEeC-CEEEEECCC------------------eEEEEEEe-CC-----cEEEEEeCCEEEEEeC
Confidence 5788999997 699999774 33444442 32 3555678888888855
No 76
>TIGR03654 L6_bact ribosomal protein L6, bacterial type.
Probab=54.08 E-value=76 Score=23.59 Aligned_cols=44 Identities=30% Similarity=0.548 Sum_probs=30.4
Q ss_pred CCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEEEEeCCEEEEEEe
Q 043288 71 KEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDGVLTVTVP 140 (156)
Q Consensus 71 ~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A~~~nGvL~I~lP 140 (156)
|++|+|++++ +.|+|+|.+ |...+.+ |. .+....+++.|.|...
T Consensus 11 P~~V~v~~~~-~~v~v~Gp~------------------G~l~~~l--~~-----~i~i~~~~~~i~v~~~ 54 (175)
T TIGR03654 11 PAGVEVTIDG-NVVTVKGPK------------------GELSRTL--HP-----GVTVKVEDGQLTVSRP 54 (175)
T ss_pred CCCcEEEEeC-CEEEEEcCC------------------eEEEEEc--CC-----CeEEEEECCEEEEEec
Confidence 5788999987 699999764 3344444 53 3455568888888765
No 77
>PRK10568 periplasmic protein; Provisional
Probab=53.50 E-value=27 Score=26.60 Aligned_cols=25 Identities=8% Similarity=0.244 Sum_probs=21.3
Q ss_pred CCCCCCCeEEEEeCCcEEEEEEEEec
Q 043288 67 PGLTKEDVKLEIEDHRVLQITADRNV 92 (156)
Q Consensus 67 PG~~~edi~v~v~~g~~L~I~g~~~~ 92 (156)
++++..+|+|.+.+| .++++|....
T Consensus 73 ~~i~~~~I~V~v~~G-~V~L~G~V~s 97 (203)
T PRK10568 73 DNIKSTDISVKTHQK-VVTLSGFVES 97 (203)
T ss_pred CCCCCCceEEEEECC-EEEEEEEeCC
Confidence 667788999999987 9999999764
No 78
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=51.78 E-value=35 Score=21.45 Aligned_cols=30 Identities=30% Similarity=0.331 Sum_probs=26.0
Q ss_pred EEEEEECCCCCccCceEEEEeCCEEEEEEe
Q 043288 111 FLRRFRLPENGKIDQVRASIEDGVLTVTVP 140 (156)
Q Consensus 111 f~r~i~lP~~vd~~~i~A~~~nGvL~I~lP 140 (156)
..-+|.+|..++.+.++..+.+.-|.|.+.
T Consensus 10 V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~ 39 (85)
T cd06467 10 VTVTIPLPEGTKSKDVKVEITPKHLKVGVK 39 (85)
T ss_pred EEEEEECCCCCcceeEEEEEEcCEEEEEEC
Confidence 556688999999999999999999999886
No 79
>PRK05498 rplF 50S ribosomal protein L6; Validated
Probab=50.41 E-value=84 Score=23.40 Aligned_cols=44 Identities=27% Similarity=0.509 Sum_probs=30.3
Q ss_pred CCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEEEEeCCEEEEEEe
Q 043288 71 KEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDGVLTVTVP 140 (156)
Q Consensus 71 ~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A~~~nGvL~I~lP 140 (156)
|++|+|++++ +.|+|+|.+ |...+.+ |.. +....+++.|.|...
T Consensus 12 P~~V~v~~~~-~~v~vkGp~------------------G~l~~~~--~~~-----v~i~~~~~~i~v~~~ 55 (178)
T PRK05498 12 PAGVEVTING-NVVTVKGPK------------------GELSRTL--NPD-----VTVKVEDNEITVTRP 55 (178)
T ss_pred CCCCEEEEEC-CEEEEECCC------------------EEEEEEc--CCC-----eEEEEECCEEEEEcC
Confidence 5789999997 699999764 3455544 433 444568888777754
No 80
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=48.87 E-value=96 Score=23.36 Aligned_cols=40 Identities=23% Similarity=0.239 Sum_probs=30.6
Q ss_pred ECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEecccc
Q 043288 55 ETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVERE 95 (156)
Q Consensus 55 e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~ 95 (156)
..++.|+=++.||--..+-.+++++|| +|.|.-.+..+..
T Consensus 133 ~~~~~~~krv~L~~~~~e~~~~t~nNg-ILEIri~~~~~~~ 172 (177)
T PF05455_consen 133 RVGEKYLKRVALPWPDPEITSATFNNG-ILEIRIRRTEESS 172 (177)
T ss_pred ecCCceEeeEecCCCccceeeEEEeCc-eEEEEEeecCCCC
Confidence 345556678889866678889999986 9999988876654
No 81
>PTZ00027 60S ribosomal protein L6; Provisional
Probab=47.04 E-value=97 Score=23.47 Aligned_cols=48 Identities=19% Similarity=0.301 Sum_probs=31.8
Q ss_pred CCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEEEEeCCEEEEEEe
Q 043288 70 TKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDGVLTVTVP 140 (156)
Q Consensus 70 ~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A~~~nGvL~I~lP 140 (156)
=|++++|++++ +.++|+|.+ |...+.+ |..- ..+....+||.|.|..+
T Consensus 12 IP~~V~V~i~~-~~v~VkGp~------------------G~L~~~~--~~~~--~~i~i~~~~~~i~v~~~ 59 (190)
T PTZ00027 12 IPEGVTVTVKS-RKVTVTGKY------------------GELTRSF--RHLP--VDIKLSKDGKYIKVEMW 59 (190)
T ss_pred cCCCCEEEEEC-CEEEEECCC------------------ceEEEEe--cCCC--ceEEEEeCCCEEEEEeC
Confidence 36899999997 699999764 3344443 3210 24566678888888755
No 82
>KOG3247 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.39 E-value=12 Score=31.99 Aligned_cols=76 Identities=17% Similarity=0.210 Sum_probs=51.9
Q ss_pred cceeEEEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCc-cCce
Q 043288 48 NTRMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGK-IDQV 126 (156)
Q Consensus 48 ~p~~di~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd-~~~i 126 (156)
+|.+.+..+++.+.|.+-.|-.+...+++-.-+ +....++. .|.-+..+|.-+. -..-
T Consensus 3 tp~f~itqdee~~~L~I~~p~~~a~~le~~a~~-nm~~f~~~--------------------pyflrl~~p~~~~~d~~~ 61 (466)
T KOG3247|consen 3 TPQFAITQDEEFCTLIIPRPLNQASKLEIDAAA-NMASFSAG--------------------PYFLRLAGPGMVEDDARP 61 (466)
T ss_pred CceeeeeecCceEEEEeeccccchhccchhhHh-hhhhhccc--------------------hhHHhhcCcchhhhhccc
Confidence 578899999999999999998888888877775 45555532 2333355554422 2223
Q ss_pred EEEE--eCCEEEEEEeccCC
Q 043288 127 RASI--EDGVLTVTVPKEEV 144 (156)
Q Consensus 127 ~A~~--~nGvL~I~lPK~~~ 144 (156)
.|+| ++|-..|++||..+
T Consensus 62 n~s~d~kd~~~~vK~~K~~~ 81 (466)
T KOG3247|consen 62 NASYDAKDGYAHVKVPKFHP 81 (466)
T ss_pred cCccccccceeEEeecCCCc
Confidence 3444 67999999999654
No 83
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=44.62 E-value=98 Score=23.09 Aligned_cols=44 Identities=20% Similarity=0.536 Sum_probs=29.6
Q ss_pred CCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEEEEeCCEEEEEEe
Q 043288 71 KEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDGVLTVTVP 140 (156)
Q Consensus 71 ~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A~~~nGvL~I~lP 140 (156)
|++|+|++++ +.|+|+|.. |... ..||. .+....+++.|.|..+
T Consensus 12 P~~V~v~i~~-~~v~vkGp~------------------G~l~--~~~~~-----~v~i~~~~~~i~v~~~ 55 (178)
T CHL00140 12 PDNVNVSIDD-QIIKVKGPK------------------GTLS--RKIPD-----LITIEIQDNSLFVSKK 55 (178)
T ss_pred CCCCEEEEEC-CEEEEECCC------------------EEEE--EECCC-----CeEEEEeCCEEEEEcC
Confidence 4678899986 699999764 2333 45554 3455568887777754
No 84
>KOG3413 consensus Mitochondrial matrix protein frataxin, involved in Fe/S protein biosynthesis [Inorganic ion transport and metabolism]
Probab=44.54 E-value=11 Score=27.54 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=17.3
Q ss_pred CCCccCceEEEEeCCEEEEEEec
Q 043288 119 ENGKIDQVRASIEDGVLTVTVPK 141 (156)
Q Consensus 119 ~~vd~~~i~A~~~nGvL~I~lPK 141 (156)
+.+..+.-.+.|.||||+|.++-
T Consensus 67 e~~~~~~~Dv~y~~GVLTl~lg~ 89 (156)
T KOG3413|consen 67 EEVPGEGFDVDYADGVLTLKLGS 89 (156)
T ss_pred hhcCccccccccccceEEEEecC
Confidence 44444556677999999999984
No 85
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=44.36 E-value=99 Score=21.81 Aligned_cols=16 Identities=6% Similarity=-0.012 Sum_probs=11.1
Q ss_pred eeEEEECCCeEEEEEE
Q 043288 50 RMDWKETPEAHVFKVD 65 (156)
Q Consensus 50 ~~di~e~~~~~~i~~~ 65 (156)
.+++.++++.+.|...
T Consensus 86 ~~~~~~~~~~L~I~~~ 101 (166)
T PF13349_consen 86 KPEISVEGGTLTIKSK 101 (166)
T ss_pred EEEEEEcCCEEEEEEe
Confidence 4667777777777766
No 86
>PF14814 UB2H: Bifunctional transglycosylase second domain; PDB: 3FWL_A 3VMA_A.
Probab=44.27 E-value=52 Score=21.31 Aligned_cols=43 Identities=16% Similarity=0.358 Sum_probs=27.0
Q ss_pred CCccEEEEeeeceEEEEEEECCCCCccCc-eEEEEeCCEEE-EEE
Q 043288 97 KNETWHRVERSRGKFLRRFRLPENGKIDQ-VRASIEDGVLT-VTV 139 (156)
Q Consensus 97 ~~~~~~~~e~~~~~f~r~i~lP~~vd~~~-i~A~~~nGvL~-I~l 139 (156)
.-+.|....-.+--+.|.|.+|+...+.. ++-.+.+|.+. |.-
T Consensus 29 ~pG~y~~~g~~i~i~~R~F~F~Dg~e~~~~~~l~f~~~~V~~i~~ 73 (85)
T PF14814_consen 29 RPGEYSRSGNRIEIYTRGFDFPDGQEPARRVRLTFSGGRVSSIQD 73 (85)
T ss_dssp STTEEEEETTEEEEEE--EEETTCEE--EEEEEEEETTEEEEEEE
T ss_pred CCeEEEEECCEEEEEECCCCCCCCCccCEEEEEEECCCEEEEEEE
Confidence 33455555555666889999999977666 88888877443 543
No 87
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=43.55 E-value=53 Score=21.79 Aligned_cols=30 Identities=10% Similarity=0.319 Sum_probs=26.5
Q ss_pred EEEEEEECCCCCccCceEEEEeCCEEEEEE
Q 043288 110 KFLRRFRLPENGKIDQVRASIEDGVLTVTV 139 (156)
Q Consensus 110 ~f~r~i~lP~~vd~~~i~A~~~nGvL~I~l 139 (156)
...-+|.+|.++..+.+...+...-|+|.+
T Consensus 16 eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~ 45 (93)
T cd06494 16 EVFIEVNVPPGTRAKDVKCKLGSRDISLAV 45 (93)
T ss_pred EEEEEEECCCCCceeeEEEEEEcCEEEEEE
Confidence 355678899999999999999999999998
No 88
>PRK11198 LysM domain/BON superfamily protein; Provisional
Probab=41.32 E-value=34 Score=24.60 Aligned_cols=25 Identities=28% Similarity=0.497 Sum_probs=21.5
Q ss_pred CCCCCCCeEEEEeCCcEEEEEEEEec
Q 043288 67 PGLTKEDVKLEIEDHRVLQITADRNV 92 (156)
Q Consensus 67 PG~~~edi~v~v~~g~~L~I~g~~~~ 92 (156)
.|+...+++|.+.+| .++++|....
T Consensus 38 ~~~~~~~i~V~v~~G-~v~l~G~v~s 62 (147)
T PRK11198 38 QGLGDADVNVQVEDG-KATVSGDAAS 62 (147)
T ss_pred cCCCcCCceEEEeCC-EEEEEEEeCC
Confidence 478888899999986 9999998765
No 89
>PF03983 SHD1: SLA1 homology domain 1, SHD1 ; InterPro: IPR007131 The SLA1 homology domain is found in the cytoskeleton assembly control protein SLA1, which is responsible for the correct formation of the actin cytoskeleton.; GO: 0008092 cytoskeletal protein binding, 0030674 protein binding, bridging, 0042802 identical protein binding, 0043130 ubiquitin binding; PDB: 2HBP_A.
Probab=40.32 E-value=33 Score=21.82 Aligned_cols=36 Identities=11% Similarity=0.322 Sum_probs=26.2
Q ss_pred eEEEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEE
Q 043288 51 MDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQI 86 (156)
Q Consensus 51 ~di~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I 86 (156)
-.|....+.|.|++.+=|+....|.+.-.+|..+.|
T Consensus 13 RtWtD~tG~f~VeA~fv~~~dgkV~L~k~nG~~i~V 48 (70)
T PF03983_consen 13 RTWTDRTGKFKVEAEFVGVNDGKVHLHKTNGVKIAV 48 (70)
T ss_dssp EEEEBSSS--EEEEEEEEEETTEEEEE-TTS-EEEE
T ss_pred eEEEeCCCCEEEEEEEEEeeCCEEEEEecCCeEEEe
Confidence 467778889999999999999999999988733333
No 90
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16. Beta-agarase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of agarose, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Agarose is a linear chain of galactose units linked by alternating L-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Agarose forms thermo-reversible gels that are widely used in the food industry or as a laboratory medium. While beta-agarases are also found in two other families derived from the sequence-based classification of glycosyl hydrolases (GH50, and GH86) the GH16 members are most abundant. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to as a jellyroll fold.
Probab=39.11 E-value=1.5e+02 Score=23.13 Aligned_cols=44 Identities=20% Similarity=0.208 Sum_probs=25.6
Q ss_pred EEEeCCcEEEEEEEEecccc-CCCccEEE------EeeeceEEEEEEECCCC
Q 043288 76 LEIEDHRVLQITADRNVERE-DKNETWHR------VERSRGKFLRRFRLPEN 120 (156)
Q Consensus 76 v~v~~g~~L~I~g~~~~~~~-~~~~~~~~------~e~~~~~f~r~i~lP~~ 120 (156)
+.+.+| .|+|++.+..... .....+.. ....+|.|+-++++|..
T Consensus 60 v~v~~G-~L~i~a~~~~~~~~~~~~~~tsg~i~t~~~~~YG~~EaR~K~p~~ 110 (258)
T cd02178 60 VSVEDG-NLVLSATRHPGTELGNGYKVTTGSITSKEKVKYGYFEARAKASNL 110 (258)
T ss_pred eEEECC-EEEEEEEcCCCCcCCCCccEEEEEEEeCCceEEEEEEEEEEcCCC
Confidence 456676 7888887664321 11112221 12356889999999853
No 91
>PF07076 DUF1344: Protein of unknown function (DUF1344); InterPro: IPR009780 This family consists of several short, hypothetical bacterial proteins of around 80 residues in length. Members of this family are found in Rhizobium, Agrobacterium and Brucella species. The function of this family is unknown.
Probab=38.02 E-value=36 Score=21.07 Aligned_cols=15 Identities=27% Similarity=0.687 Sum_probs=9.3
Q ss_pred EEEECCCCCccCceE
Q 043288 113 RRFRLPENGKIDQVR 127 (156)
Q Consensus 113 r~i~lP~~vd~~~i~ 127 (156)
+++.||...+.+.++
T Consensus 25 ksy~lp~ef~~~~L~ 39 (61)
T PF07076_consen 25 KSYKLPEEFDFDGLK 39 (61)
T ss_pred CEEECCCcccccccC
Confidence 456777777665543
No 92
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=37.37 E-value=1.8e+02 Score=22.02 Aligned_cols=49 Identities=22% Similarity=0.351 Sum_probs=27.5
Q ss_pred CCCCCeEEEEeCCcEEEEEEEEeccccCCCccE-----EE---EeeeceEEEEEEECCCC
Q 043288 69 LTKEDVKLEIEDHRVLQITADRNVEREDKNETW-----HR---VERSRGKFLRRFRLPEN 120 (156)
Q Consensus 69 ~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~-----~~---~e~~~~~f~r~i~lP~~ 120 (156)
..++++. +++| .|+|++.+..........+ .. ....+|.|+-++.+|..
T Consensus 35 ~~~~nv~--v~~G-~L~i~~~~~~~~~~~~~~~~sg~i~S~~~~~~~yG~~E~r~k~~~~ 91 (235)
T cd08023 35 YRPENAY--VEDG-NLVITARKEPDKGGDGYPYTSGRITTKGKFSFTYGRVEARAKLPKG 91 (235)
T ss_pred CCCCCeE--EECC-EEEEEEEECCCCCCCcccEEEEEEEECCCcceeCCEEEEEEEccCC
Confidence 4555554 4566 8999987654321111112 11 12345788888888854
No 93
>PF09985 DUF2223: Domain of unknown function (DUF2223); InterPro: IPR019248 This entry represents various prokaryotic membrane-anchored proteins predicted to be involved in the regulation of amylopullulanase. ; PDB: 1UG9_A 1ULV_A.
Probab=36.87 E-value=1.4e+02 Score=23.22 Aligned_cols=98 Identities=12% Similarity=0.100 Sum_probs=51.4
Q ss_pred cccceeEEEECCCeEEEEEEcC----------CCCCCCeEEEEeCCcEEEEEEEEe-ccc-cCCCccEEEEeeeceEEEE
Q 043288 46 IVNTRMDWKETPEAHVFKVDLP----------GLTKEDVKLEIEDHRVLQITADRN-VER-EDKNETWHRVERSRGKFLR 113 (156)
Q Consensus 46 ~~~p~~di~e~~~~~~i~~~lP----------G~~~edi~v~v~~g~~L~I~g~~~-~~~-~~~~~~~~~~e~~~~~f~r 113 (156)
+--..+.|++.++.|++++.+. ||+..-|.|.++.+.--.-+.-.. .+- .+...++...=-..++...
T Consensus 31 fDL~~f~v~~~g~~~~f~~~~~~l~NpW~~P~GFS~q~i~IYid~~~gg~~~~~~pG~n~~~~~~Wd~ai~i~Gw~~~~~ 110 (228)
T PF09985_consen 31 FDLTSFKVYEDGDNLVFRFTFADLTNPWNGPNGFSLQIIQIYIDTPDGGGTSTLKPGLNVEFGHPWDYAIRISGWGSYGN 110 (228)
T ss_dssp T-EEEEEEEEETTEEEEEEEESS---TT---SS-SSEEEEEEEE-S-SS-EE-S-GGG-EEESS-ECEEEEEEST--T--
T ss_pred cceeEEEEEEcCCEEEEEEEECCCCCCcccccCccceEEEEEEecCCCCcccccCCcccCCCCCCccEEEEEEeeecccc
Confidence 3446789999999999999882 788888999998531111111000 000 0222233322112222246
Q ss_pred EEECCCCCc-cCc--eEEEEeCCEEEEEEeccC
Q 043288 114 RFRLPENGK-IDQ--VRASIEDGVLTVTVPKEE 143 (156)
Q Consensus 114 ~i~lP~~vd-~~~--i~A~~~nGvL~I~lPK~~ 143 (156)
.+..|+.-. ... |.+.-.++.+++.+||+.
T Consensus 111 ~~~~~~G~~~~~~~~v~~~~~~~~I~~~vpk~~ 143 (228)
T PF09985_consen 111 AIYDADGTAISGAPQVSVDPSGNTIIVEVPKKY 143 (228)
T ss_dssp EEE-TTS-E-EE--EEEEECCCTEEEEEEEGGG
T ss_pred eEEccCCccCCCcceEEeccCCCEEEEEcCHHH
Confidence 677777655 233 444456899999999983
No 94
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=36.10 E-value=40 Score=22.97 Aligned_cols=18 Identities=28% Similarity=0.464 Sum_probs=15.2
Q ss_pred CceEEEEeCCEEEEEEec
Q 043288 124 DQVRASIEDGVLTVTVPK 141 (156)
Q Consensus 124 ~~i~A~~~nGvL~I~lPK 141 (156)
..+.+.+.+|||+|+++.
T Consensus 28 ~d~D~e~~~gVLti~f~~ 45 (105)
T cd00503 28 ADIDVETQGGVLTLTFGN 45 (105)
T ss_pred cCEeeeccCCEEEEEECC
Confidence 457788899999999983
No 95
>PTZ00179 60S ribosomal protein L9; Provisional
Probab=35.97 E-value=1.6e+02 Score=22.23 Aligned_cols=47 Identities=21% Similarity=0.378 Sum_probs=30.5
Q ss_pred CCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEEEEeCCEEEEEEe
Q 043288 71 KEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDGVLTVTVP 140 (156)
Q Consensus 71 ~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A~~~nGvL~I~lP 140 (156)
|++++|++++ +.|+|+|.+ |..++ .||.. + -.+....+++.|.|.-+
T Consensus 12 P~~V~V~i~~-~~ItVkGpk------------------G~Ls~--~~~~~-~-~~i~i~~~~~~I~v~~~ 58 (189)
T PTZ00179 12 PEDVTVSVKD-RIVTVKGKR------------------GTLTK--DLRHL-Q-LDFRVNKKNRTFTAVRW 58 (189)
T ss_pred CCCCEEEEeC-CEEEEECCC------------------cEEEE--EcCCC-C-cEEEEEecCCEEEEEeC
Confidence 5789999997 699999774 23333 44431 0 13455677888888754
No 96
>PF14913 DPCD: DPCD protein family
Probab=35.46 E-value=52 Score=25.08 Aligned_cols=42 Identities=14% Similarity=0.208 Sum_probs=31.9
Q ss_pred eeEEEECCCeEEEEEEcCCCCC-------CCeEEEEeCCcEEEEEEEEec
Q 043288 50 RMDWKETPEAHVFKVDLPGLTK-------EDVKLEIEDHRVLQITADRNV 92 (156)
Q Consensus 50 ~~di~e~~~~~~i~~~lPG~~~-------edi~v~v~~g~~L~I~g~~~~ 92 (156)
-+-|..+..+|.=++.+|.++. +.|+....+ |.|+|+-+++.
T Consensus 122 ~ivvRTtNKKYyKk~~IPDl~R~~l~l~~~~ls~~h~n-NTLIIsYkKP~ 170 (194)
T PF14913_consen 122 CIVVRTTNKKYYKKFSIPDLDRCGLPLEQSALSFAHQN-NTLIISYKKPK 170 (194)
T ss_pred EEEEECcCccceeEecCCcHHhhCCCcchhhceeeeec-CeEEEEecCcH
Confidence 3566777789999999996543 466666776 79999988765
No 97
>PF01491 Frataxin_Cyay: Frataxin-like domain; InterPro: IPR002908 The eukaryotic proteins in this entry include frataxin, the protein that is mutated in Friedreich's ataxia [], and related sequences. Friedreich's ataxia is a progressive neurodegenerative disorder caused by loss of function mutations in the gene encoding frataxin (FRDA). Frataxin mRNA is predominantly expressed in tissues with a high metabolic rate (including liver, kidney, brown fat and heart). Mouse and yeast frataxin homologues contain a potential N-terminal mitochondrial targeting sequence, and human frataxin has been observed to co-localise with a mitochondrial protein. Furthermore, disruption of the yeast gene has been shown to result in mitochondrial dysfunction. Friedreich's ataxia is thus believed to be a mitochondrial disease caused by a mutation in the nuclear genome (specifically, expansion of an intronic GAA triplet repeat) [, , ]. The bacterial proteins in this entry are iron-sulphur cluster (FeS) metabolism CyaY proteins hmologous to eukaryotic frataxin. Partial Phylogenetic Profiling [] suggests that CyaY most likely functions as part of the ISC system for FeS cluster biosynthesis, and is supported by expermimental data in some species [, ]. ; PDB: 1EW4_A 2P1X_A 1SOY_A 2EFF_A 3T3T_B 3S4M_A 3T3K_A 3S5D_A 1LY7_A 3T3X_B ....
Probab=34.92 E-value=55 Score=22.38 Aligned_cols=19 Identities=26% Similarity=0.501 Sum_probs=15.7
Q ss_pred CceEEEEeCCEEEEEEecc
Q 043288 124 DQVRASIEDGVLTVTVPKE 142 (156)
Q Consensus 124 ~~i~A~~~nGvL~I~lPK~ 142 (156)
..+.+.+.+|||+|.++..
T Consensus 30 ~d~d~e~~~gVLti~~~~~ 48 (109)
T PF01491_consen 30 ADIDVERSGGVLTIEFPDG 48 (109)
T ss_dssp STEEEEEETTEEEEEETTS
T ss_pred CceEEEccCCEEEEEECCC
Confidence 3588999999999999643
No 98
>PRK00446 cyaY frataxin-like protein; Provisional
Probab=34.28 E-value=43 Score=22.85 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=14.6
Q ss_pred eEEEEeCCEEEEEEecc
Q 043288 126 VRASIEDGVLTVTVPKE 142 (156)
Q Consensus 126 i~A~~~nGvL~I~lPK~ 142 (156)
+.+.+.+|||+|+++..
T Consensus 29 ~D~e~~~gVLti~f~~~ 45 (105)
T PRK00446 29 IDCERNGGVLTLTFENG 45 (105)
T ss_pred eeeeccCCEEEEEECCC
Confidence 77888999999999854
No 99
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16. Lichenase, also known as 1,3-1,4-beta-glucanase, is a member of glycosyl hydrolase family 16, that specifically cleaves 1,4-beta-D-glucosidic bonds in mixed-linked beta glucans that also contain 1,3-beta-D-glucosidic linkages. Natural substrates of beta-glucanase are beta-glucans from grain endosperm cell walls or lichenan from the Islandic moss, Cetraria islandica. This protein is found not only in bacteria but also in anaerobic fungi. This domain includes two seven-stranded antiparallel beta-sheets that are adjacent to one another forming a compact, jellyroll beta-sandwich structure.
Probab=33.41 E-value=1.4e+02 Score=22.48 Aligned_cols=47 Identities=15% Similarity=0.210 Sum_probs=24.3
Q ss_pred CCCeEEEEeCCcEEEEEEEEecccc--CCCccEEEE-eeeceEEEEEEECCCC
Q 043288 71 KEDVKLEIEDHRVLQITADRNVERE--DKNETWHRV-ERSRGKFLRRFRLPEN 120 (156)
Q Consensus 71 ~edi~v~v~~g~~L~I~g~~~~~~~--~~~~~~~~~-e~~~~~f~r~i~lP~~ 120 (156)
++++.| .+| .|+|++.+..... -..+.+..+ -..+|.|+-++.+|..
T Consensus 31 ~~nv~v--~~g-~L~l~~~~~~~~~~~~tsg~i~S~~~f~yG~~ear~k~~~~ 80 (212)
T cd02175 31 ADNVEF--SDG-GLALTLTNDTYGEKPYACGEYRTRGFYGYGRYEVRMKPAKG 80 (212)
T ss_pred cccEEE--ECC-eEEEEEeCCcCCCCccccceEEECceEEeeEEEEEEEcCCC
Confidence 455444 355 6777776543210 011122221 2356888888888853
No 100
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=32.91 E-value=71 Score=19.29 Aligned_cols=21 Identities=33% Similarity=0.403 Sum_probs=16.6
Q ss_pred cCCCCC-CCeEEEEeCCcEEEEE
Q 043288 66 LPGLTK-EDVKLEIEDHRVLQIT 87 (156)
Q Consensus 66 lPG~~~-edi~v~v~~g~~L~I~ 87 (156)
-.||.. +.|+|++.+| .|+|+
T Consensus 35 ~aGF~~G~~v~V~v~~g-~lvIt 56 (57)
T PF08845_consen 35 EAGFTIGDPVKVRVMPG-CLVIT 56 (57)
T ss_pred HhCCCCCCEEEEEEECC-EEEEe
Confidence 358865 7899999986 88886
No 101
>TIGR03421 FeS_CyaY iron donor protein CyaY. Members of this protein family are the iron-sulfur cluster (FeS) metabolism protein CyaY, a homolog of eukaryotic frataxin. ISC is one of several bacterial systems for FeS assembly; we find by Partial Phylogenetic Profiling vs. the ISC system that CyaY most like work with the ISC system for FeS cluster biosynthesis. A study of of cyaY mutants in Salmonella enterica bears this out. Although the trusted cutoff is set low enough to include eukaryotic frataxin sequences, a narrower, exception-type model (TIGR03421) identifies identifies members of that specific set.
Probab=32.69 E-value=42 Score=22.76 Aligned_cols=17 Identities=29% Similarity=0.458 Sum_probs=14.4
Q ss_pred ceEEEEeCCEEEEEEec
Q 043288 125 QVRASIEDGVLTVTVPK 141 (156)
Q Consensus 125 ~i~A~~~nGvL~I~lPK 141 (156)
.+.+.+.+|||+|+++.
T Consensus 26 d~D~e~~~gVLti~f~~ 42 (102)
T TIGR03421 26 DIDCERAGGVLTLTFEN 42 (102)
T ss_pred CeeeecCCCEEEEEECC
Confidence 37788899999999984
No 102
>PF15631 Imm-NTF2-2: NTF2 fold immunity protein
Probab=31.81 E-value=1.3e+02 Score=18.80 Aligned_cols=42 Identities=21% Similarity=0.306 Sum_probs=28.8
Q ss_pred ccceeEEEECCCeEEEEEEcC-CCCCCCeEEEE--eCCcEEEEEE
Q 043288 47 VNTRMDWKETPEAHVFKVDLP-GLTKEDVKLEI--EDHRVLQITA 88 (156)
Q Consensus 47 ~~p~~di~e~~~~~~i~~~lP-G~~~edi~v~v--~~g~~L~I~g 88 (156)
.+.|..+.+.++.++|.-.+| +..-....|.+ .||++|.+..
T Consensus 20 ~ekP~~v~~~~~~WiV~Gtl~~~~~GGv~~I~I~K~dgkVl~v~H 64 (66)
T PF15631_consen 20 EEKPYRVTLDGDSWIVEGTLPPGMLGGVFYIEIRKKDGKVLNVTH 64 (66)
T ss_pred hcCCeEEecCCCeEEEEeecCCCccCCeEEEEEEccCCeEEEEEe
Confidence 356789999999999999987 54444444444 4666666653
No 103
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A.
Probab=30.98 E-value=58 Score=20.06 Aligned_cols=29 Identities=10% Similarity=0.299 Sum_probs=20.4
Q ss_pred CeEEEEEEcCCCCCCCe-EEEEeCCcEEEE
Q 043288 58 EAHVFKVDLPGLTKEDV-KLEIEDHRVLQI 86 (156)
Q Consensus 58 ~~~~i~~~lPG~~~edi-~v~v~~g~~L~I 86 (156)
+.|.|.+..+|+.+... .|.+..|....+
T Consensus 48 g~Y~l~v~~~g~~~~~~~~v~v~~~~~~~~ 77 (82)
T PF13620_consen 48 GTYTLRVSAPGYQPQTQENVTVTAGQTTTV 77 (82)
T ss_dssp EEEEEEEEBTTEE-EEEEEEEESSSSEEE-
T ss_pred EeEEEEEEECCcceEEEEEEEEeCCCEEEE
Confidence 67899999999888877 588876544443
No 104
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....
Probab=29.71 E-value=1.4e+02 Score=18.33 Aligned_cols=44 Identities=25% Similarity=0.439 Sum_probs=29.7
Q ss_pred CCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCceEEE--EeCCEEEEEEe
Q 043288 71 KEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRAS--IEDGVLTVTVP 140 (156)
Q Consensus 71 ~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~i~A~--~~nGvL~I~lP 140 (156)
++.++|++++ +.+++.|... ..++.+|.. ++.. .+++.+.+...
T Consensus 2 P~gV~v~~~~-~~i~v~G~~g--------------------~l~~~~~~~-----v~v~~~~~~~~~~~~~~ 47 (77)
T PF00347_consen 2 PEGVKVTIKG-NIITVKGPKG--------------------ELSRPIPPG-----VKVEIKVEDNKITVSVL 47 (77)
T ss_dssp STTCEEEEET-TEEEEESSSS--------------------EEEEEETTT-----EEEEEEEETTSEEEEEE
T ss_pred CCcEEEEEeC-cEEEEECCCE--------------------eEEEECCCC-----eeEEEEcCCCceEEEEC
Confidence 5678999997 6888886632 255777754 3444 55777777665
No 105
>PF11033 ComJ: Competence protein J (ComJ); InterPro: IPR020354 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. The proteins in this entry play a role in the competence of cells to be transformed. They inhibit the activity of the DNA-entry nuclease. DNA-entry nuclease inhibitor is a subunit of a 75 kDa protein complex, which governs binding and entry of donor DNA. The complex is a tetramer of two subunits of the DNA-entry nuclease and two subunits of a competence-specific protein ComJ. Only the complex is able to bind ds- and ss-DNA []. It is found in the plasma membrane.
Probab=29.68 E-value=1.9e+02 Score=20.45 Aligned_cols=31 Identities=26% Similarity=0.351 Sum_probs=22.4
Q ss_pred EEEEEECCCCCccCc--eEEEEeCCEEEEEEecc
Q 043288 111 FLRRFRLPENGKIDQ--VRASIEDGVLTVTVPKE 142 (156)
Q Consensus 111 f~r~i~lP~~vd~~~--i~A~~~nGvL~I~lPK~ 142 (156)
..|++.+|..|..+. |++.+.+ .|.+.+||.
T Consensus 65 ~~R~i~VPF~V~~d~i~V~Svls~-~~~~~ip~G 97 (125)
T PF11033_consen 65 AQRTISVPFTVKGDGIEVSSVLSE-KLSFDIPKG 97 (125)
T ss_pred ceEEEEeeEEEcCCCEEEEEeecC-cEEEecCCC
Confidence 679999998887666 4555566 477777764
No 106
>PF07873 YabP: YabP family; InterPro: IPR022476 Members of this protein family are the YabP and YqfC proteins of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. ; PDB: 2KYI_B 3IPF_B 2KS0_A.
Probab=29.31 E-value=51 Score=20.28 Aligned_cols=23 Identities=17% Similarity=0.367 Sum_probs=18.6
Q ss_pred CCCCCCeEEEEeCCcEEEEEEEEe
Q 043288 68 GLTKEDVKLEIEDHRVLQITADRN 91 (156)
Q Consensus 68 G~~~edi~v~v~~g~~L~I~g~~~ 91 (156)
-++.+.|.|....| .|.|.|+.=
T Consensus 22 ~f~~~~I~l~t~~g-~l~I~G~~L 44 (66)
T PF07873_consen 22 SFDDEEIRLNTKKG-KLTIKGEGL 44 (66)
T ss_dssp EEETTEEEEEETTE-EEEEEEEEE
T ss_pred EECCCEEEEEeCCE-EEEEECceE
Confidence 35788899999886 899999853
No 107
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.00 E-value=1.6e+02 Score=19.82 Aligned_cols=35 Identities=14% Similarity=0.318 Sum_probs=27.5
Q ss_pred eeEEEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEE
Q 043288 50 RMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITAD 89 (156)
Q Consensus 50 ~~di~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~ 89 (156)
.++|.+.+| .|....||.+ .|.|+.++ +.|.|.+.
T Consensus 25 g~~v~~eGD--~ivas~pgis--~ieik~E~-kkL~v~t~ 59 (96)
T COG4004 25 GWTVSEEGD--RIVASSPGIS--RIEIKPEN-KKLLVNTT 59 (96)
T ss_pred CeeEeeccc--EEEEecCCce--EEEEeccc-ceEEEecc
Confidence 368888888 7778899975 57888887 48888873
No 108
>PF06964 Alpha-L-AF_C: Alpha-L-arabinofuranosidase C-terminus; InterPro: IPR010720 This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (3.2.1.55 from EC). This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides [].; GO: 0046556 alpha-N-arabinofuranosidase activity, 0046373 L-arabinose metabolic process; PDB: 3FW6_A 3II1_A 3S2C_K 1QW9_A 1PZ3_B 1PZ2_B 1QW8_A 3UG4_A 3UG3_A 4ATW_B ....
Probab=26.29 E-value=1.4e+02 Score=21.75 Aligned_cols=28 Identities=36% Similarity=0.376 Sum_probs=20.6
Q ss_pred EECCCCCccCceEEEEeCCEEEEEEecc
Q 043288 115 FRLPENGKIDQVRASIEDGVLTVTVPKE 142 (156)
Q Consensus 115 i~lP~~vd~~~i~A~~~nGvL~I~lPK~ 142 (156)
+.=|+.|-+.........|-+++++|+.
T Consensus 149 ~~~p~~V~p~~~~~~~~~~~~~~~lp~~ 176 (177)
T PF06964_consen 149 FENPENVVPVTSTVSAEGGTFTYTLPPY 176 (177)
T ss_dssp SSSTTSSEEEEEEEEEETTEEEEEE-SS
T ss_pred CCCCCEEEEEEeeEEecCCEEEEEeCCC
Confidence 4557778888666666799999999974
No 109
>cd08024 GH16_CCF Coelomic cytolytic factor, member of glycosyl hydrolase family 16. Subgroup of glucanases of unknown function that are related to beta-GRP (beta-1,3-glucan recognition protein), but contain active site residues. Beta-GRPs are one group of pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. Beta-GRPs are present in insects and lack all catalytic residues. This subgroup contains related proteins that still contain the active site and are widely distributed in eukaryotes. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=26.20 E-value=3.7e+02 Score=22.05 Aligned_cols=15 Identities=27% Similarity=0.372 Sum_probs=10.3
Q ss_pred eeceEEEEEEECCCC
Q 043288 106 RSRGKFLRRFRLPEN 120 (156)
Q Consensus 106 ~~~~~f~r~i~lP~~ 120 (156)
..+|.++-++.||..
T Consensus 112 f~YGrvE~RaKlP~G 126 (330)
T cd08024 112 FKYGRVEVRAKLPTG 126 (330)
T ss_pred eeceEEEEEEECCCC
Confidence 356777777888754
No 110
>cd02179 GH16_beta_GRP beta-1,3-glucan recognition protein, member of glycosyl hydrolase family 16. Beta-GRP (beta-1,3-glucan recognition protein) is one of several pattern recognition receptors (PRRs), also referred to as biosensor proteins, that complexes with pathogen-associated beta-1,3-glucans and then transduces signals necessary for activation of an appropriate innate immune response. They are present in insects and lack all catalytic residues. This subgroup also contains related proteins of unknown function that still contain the active site. Their structures adopt a jelly roll fold with a deep active site channel harboring the catalytic residues, like those of other glycosyl hydrolase family 16 members.
Probab=25.59 E-value=3.7e+02 Score=21.95 Aligned_cols=13 Identities=31% Similarity=0.524 Sum_probs=7.1
Q ss_pred eceEEEEEEECCC
Q 043288 107 SRGKFLRRFRLPE 119 (156)
Q Consensus 107 ~~~~f~r~i~lP~ 119 (156)
.+|.++-+..||.
T Consensus 110 ~YGrvEvRAKlP~ 122 (321)
T cd02179 110 KYGRVEIRAKLPK 122 (321)
T ss_pred eccEEEEEEEccC
Confidence 3455555566554
No 111
>TIGR03422 mito_frataxin frataxin. Frataxin is a mitochondrial protein, mutation of which leads to the disease Friedreich's ataxia. Its orthologs are widely distributed in the bacteria, associated with the ISC system for iron-sulfur cluster assembly, and designated CyaY. This exception-type model allows those examples of frataxin per se that score above the trusted cutoff to the CyaY equivalog-type model (TIGR03421) to be named appropriately.
Probab=25.47 E-value=55 Score=22.04 Aligned_cols=16 Identities=31% Similarity=0.538 Sum_probs=13.0
Q ss_pred EEEEeCCEEEEEEecc
Q 043288 127 RASIEDGVLTVTVPKE 142 (156)
Q Consensus 127 ~A~~~nGvL~I~lPK~ 142 (156)
.+.+.+|||+|+++..
T Consensus 30 D~e~~~gVLti~~~~~ 45 (97)
T TIGR03422 30 DVEYSSGVLTLELPSV 45 (97)
T ss_pred ccccCCCEEEEEECCC
Confidence 6668999999999643
No 112
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=25.38 E-value=78 Score=17.60 Aligned_cols=26 Identities=15% Similarity=0.257 Sum_probs=15.5
Q ss_pred EEEEcCCCCCCCeEEEEeCCcEEEEE
Q 043288 62 FKVDLPGLTKEDVKLEIEDHRVLQIT 87 (156)
Q Consensus 62 i~~~lPG~~~edi~v~v~~g~~L~I~ 87 (156)
+...+-..+-+.+.|...+|+.++|+
T Consensus 14 v~g~I~~~~g~~vtV~~~~G~~~tv~ 39 (42)
T PF02736_consen 14 VKGEIIEEEGDKVTVKTEDGKEVTVK 39 (42)
T ss_dssp EEEEEEEEESSEEEEEETTTEEEEEE
T ss_pred EEEEEEEEcCCEEEEEECCCCEEEeC
Confidence 34444455666777777766655554
No 113
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16. Proteins similar to Streptomyces sioyaensis beta-1,3-glucanase (laminarinase) present in Actinomycetales as well as Peziomycotina. Laminarinases belong to glycosyl hydrolase family 16 and hydrolyze the glycosidic bond of the 1,3-beta-linked glucan, a major component of fungal and plant cell walls and the structural and storage polysaccharides (laminarin) of marine macro-algae. Members of the GH16 family have a conserved jelly roll fold with an active site channel.
Probab=24.26 E-value=1.7e+02 Score=22.87 Aligned_cols=14 Identities=36% Similarity=0.522 Sum_probs=10.0
Q ss_pred EEe-CCcEEEEEEEEe
Q 043288 77 EIE-DHRVLQITADRN 91 (156)
Q Consensus 77 ~v~-~g~~L~I~g~~~ 91 (156)
.|+ +| .|+|++.+.
T Consensus 49 ~v~~dG-~L~I~a~~~ 63 (259)
T cd02182 49 QLSGNG-TLQITPLRD 63 (259)
T ss_pred EEcCCC-eEEEEEEec
Confidence 445 66 789998765
No 114
>TIGR02892 spore_yabP sporulation protein YabP. Members of this protein family are the YabP protein of the bacterial sporulation program, as found in Bacillus subtilis, Clostridium tetani, and other spore-forming members of the Firmicutes. In Bacillus subtilis, a yabP single mutant appears to sporulate and germinate normally (PubMed:11283287), but is in an operon with yabQ (essential for formation of the spore cortex), it near-universal among endospore-forming bacteria, and is found nowhere else. It is likely, therefore, that YabP does have a function in sporulation or germination, one that is either unappreciated or partially redundant with that of another protein.
Probab=24.18 E-value=66 Score=21.15 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=16.5
Q ss_pred CCCCCCeEEEEeCCcEEEEEEEE
Q 043288 68 GLTKEDVKLEIEDHRVLQITADR 90 (156)
Q Consensus 68 G~~~edi~v~v~~g~~L~I~g~~ 90 (156)
-|+.+.|.+....| .|+|+|+.
T Consensus 21 sfd~~~I~l~T~~G-~L~I~G~~ 42 (85)
T TIGR02892 21 SFDDEEILLETVMG-FLTIKGQE 42 (85)
T ss_pred EECCCEEEEEeCcE-EEEEEcce
Confidence 35677888888876 88888874
No 115
>TIGR02856 spore_yqfC sporulation protein YqfC. This small protein, designated YqfC in Bacillus subtilis, is both restricted to and universal in sporulating species of the Firmcutes, such as Bacillus subtilis and Clostridium perfringens. It is part of the sigma(E)-controlled regulon, and its mutation leads to a sporulation defect.
Probab=24.16 E-value=64 Score=21.09 Aligned_cols=40 Identities=20% Similarity=0.226 Sum_probs=26.3
Q ss_pred ceeEEEECCCeEEEEE--EcCCCCCCCeEEEEeCCcEEEEEEEE
Q 043288 49 TRMDWKETPEAHVFKV--DLPGLTKEDVKLEIEDHRVLQITADR 90 (156)
Q Consensus 49 p~~di~e~~~~~~i~~--~lPG~~~edi~v~v~~g~~L~I~g~~ 90 (156)
|.+.+. ...+..|+= .+=-++.+.|.|....| .|.|+|+.
T Consensus 20 p~itl~-gr~~~~Ien~k~I~~y~~~~I~l~t~~G-~l~I~G~~ 61 (85)
T TIGR02856 20 PRITLI-GNEHIYIENHRGLVVFSPEEVKLNSTNG-KITIEGKN 61 (85)
T ss_pred CEEEEE-CCcEEEEECccceEEECCCEEEEEcCce-EEEEEccc
Confidence 555554 223333332 33357889999999986 99999985
No 116
>cd02177 GH16_kappa_carrageenase Kappa-carrageenase, member of glycosyl hydrolase family 16. Kappa-carrageenase is a glycosyl hydrolase family 16 (GH16) member that hydrolyzes the internal beta-1,4-linkage of kappa-carrageenans, a hydrophilic polysaccharide found in the cell wall of Rhodophyceaea, marine red algae. Carrageenans are linear chains of galactose units linked by alternating D-alpha-1,3- and D-beta-1,4-linkages that are additionally modified by a 3,6-anhydro-bridge. Depending on the position and number of sulfate ester modifications they are subdivided into kappa-, iota-, and lambda-carrageenases, kappa being modified once. Carrageenans form thermo-reversible gels widely used for industrial applications. Kappa-carrageenases exist in bacteria belonging to at least three phylogenetically distant branches, including pseudoalteromonas, planctomycetes, and baceroidetes. This domain adopts a curved beta-sandwich conformation, with a tunnel-shaped active site cavity, referred to
Probab=23.81 E-value=3.8e+02 Score=21.38 Aligned_cols=17 Identities=29% Similarity=0.538 Sum_probs=12.2
Q ss_pred EEEEeCCcEEEEEEEEec
Q 043288 75 KLEIEDHRVLQITADRNV 92 (156)
Q Consensus 75 ~v~v~~g~~L~I~g~~~~ 92 (156)
.+.+.+| .|+|++.+..
T Consensus 45 Nv~v~dG-~L~i~a~~e~ 61 (269)
T cd02177 45 NVVISNG-ILELTMRRNA 61 (269)
T ss_pred ceEEeCC-EEEEEEEecc
Confidence 4467777 7899987753
No 117
>smart00813 Alpha-L-AF_C Alpha-L-arabinofuranosidase C-terminus. This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase. This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides.
Probab=23.65 E-value=2.2e+02 Score=21.03 Aligned_cols=27 Identities=33% Similarity=0.402 Sum_probs=17.6
Q ss_pred ECCCCCccCceE-EEEeCCEEEEEEecc
Q 043288 116 RLPENGKIDQVR-ASIEDGVLTVTVPKE 142 (156)
Q Consensus 116 ~lP~~vd~~~i~-A~~~nGvL~I~lPK~ 142 (156)
.=|+.|-+.... +...+|.|+++||+.
T Consensus 161 ~~p~~V~p~~~~~~~~~~~~~~~~lp~~ 188 (189)
T smart00813 161 EDPNKVVPVTSTLAAVEGGTLTVTLPPH 188 (189)
T ss_pred CCCCeeeccccCCceeeCCEEEEEeCCC
Confidence 445555555433 345778999999974
No 118
>PF12624 Chorein_N: N-terminal region of Chorein, a TM vesicle-mediated sorter
Probab=23.53 E-value=68 Score=21.94 Aligned_cols=21 Identities=10% Similarity=0.284 Sum_probs=17.0
Q ss_pred CCCCCCCeEEEEeCCcEEEEEE
Q 043288 67 PGLTKEDVKLEIEDHRVLQITA 88 (156)
Q Consensus 67 PG~~~edi~v~v~~g~~L~I~g 88 (156)
-|++++++++.+-+| .+.++-
T Consensus 18 ~~l~~~ql~vsl~~G-~v~L~n 38 (118)
T PF12624_consen 18 ENLDKDQLSVSLWNG-EVELRN 38 (118)
T ss_pred hcCCHHHeeeeeccC-ceEEEc
Confidence 478899999999887 677774
No 119
>PF14869 DUF4488: Domain of unknown function (DUF4488)
Probab=23.02 E-value=2.9e+02 Score=19.79 Aligned_cols=73 Identities=10% Similarity=0.105 Sum_probs=43.3
Q ss_pred cceeEEEECCCeEEEEEEcCCCCCCCeEEEEeCCcEEEEEEEEeccccCCCccEEEEeeeceEEEEEEECCCCCccCc-e
Q 043288 48 NTRMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQ-V 126 (156)
Q Consensus 48 ~p~~di~e~~~~~~i~~~lPG~~~edi~v~v~~g~~L~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~i~lP~~vd~~~-i 126 (156)
.|.+.|.-+|+.|.--+-+|+- |-.++..|+-....+. .| .-+..+++.+|.-...++ +
T Consensus 26 ~~~lKilS~Dgtf~Ni~~~~~~-----------~aiIt~~GtY~~~sD~---~Y------~E~IeKnv~lp~~~g~~n~l 85 (133)
T PF14869_consen 26 SNVLKILSDDGTFVNITMIPKS-----------GAIITGYGTYEQPSDN---IY------VESIEKNVHLPFLDGKDNEL 85 (133)
T ss_pred cccEEEEcCCCcEEEEEEeCCC-----------CcEEEEeEEEEEcCCc---cc------eeeecceecCcccCCCccEE
Confidence 3568888888777655555541 2355556655444332 11 124567788886655544 7
Q ss_pred EEEE-eCCEEEEEEe
Q 043288 127 RASI-EDGVLTVTVP 140 (156)
Q Consensus 127 ~A~~-~nGvL~I~lP 140 (156)
+-.+ +|++|.|+.-
T Consensus 86 ~fe~~~dnll~iky~ 100 (133)
T PF14869_consen 86 EFELLHDNLLKIKYF 100 (133)
T ss_pred EEEecCCCEEEEEEE
Confidence 7777 6777777663
No 120
>TIGR02934 nifT_nitrog probable nitrogen fixation protein FixT. This largely uncharacterized protein family is assigned a role in nitrogen fixation by two criteria. First, its gene occurs, generally, among genes essential for expression of active nitrogenase. Second, its phylogenetic profile closely matches that of nitrogen-fixing bacteria. However, mutational studies in Klebsiella pneumoniae failed to demonstrate any phenotype for deletion or overexpression of the protein.
Probab=22.70 E-value=79 Score=19.91 Aligned_cols=16 Identities=31% Similarity=0.642 Sum_probs=12.4
Q ss_pred eCCEEEEEEeccCCCC
Q 043288 131 EDGVLTVTVPKEEVKK 146 (156)
Q Consensus 131 ~nGvL~I~lPK~~~~~ 146 (156)
.+|.|.+.+||+.-++
T Consensus 9 ~~g~l~~YvpKKDLEE 24 (67)
T TIGR02934 9 RAGELSAYVPKKDLEE 24 (67)
T ss_pred CCCCEEEEEECCcchh
Confidence 4677999999987554
No 121
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16. The O-Glycosyl hydrolases are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A glycosyl hydrolase classification system based on sequence similarity has led to the definition of more than 95 different families inlcuding glycosyl hydrolase family 16. Family 16 includes lichenase, xyloglucan endotransglycosylase (XET), beta-agarase, kappa-carrageenase, endo-beta-1,3-glucanase, endo-beta-1,3-1,4-glucanase, and endo-beta-galactosidase, all of which have a conserved jelly roll fold with a deep active site channel harboring the catalytic residues.
Probab=22.37 E-value=2.5e+02 Score=20.58 Aligned_cols=15 Identities=20% Similarity=0.293 Sum_probs=11.5
Q ss_pred eeceEEEEEEECCCC
Q 043288 106 RSRGKFLRRFRLPEN 120 (156)
Q Consensus 106 ~~~~~f~r~i~lP~~ 120 (156)
..+|.|+-++.+|..
T Consensus 65 ~~yG~~ear~k~~~~ 79 (210)
T cd00413 65 YTYGYYEARAKLAGG 79 (210)
T ss_pred EeeEEEEEEEEcCCC
Confidence 446888888998864
No 122
>PRK14291 chaperone protein DnaJ; Provisional
Probab=21.69 E-value=3.8e+02 Score=22.34 Aligned_cols=28 Identities=18% Similarity=0.232 Sum_probs=17.5
Q ss_pred ECCCCCccCceEEEEeCC-EEEEEEeccC
Q 043288 116 RLPENGKIDQVRASIEDG-VLTVTVPKEE 143 (156)
Q Consensus 116 ~lP~~vd~~~i~A~~~nG-vL~I~lPK~~ 143 (156)
+|.+.+--..+....-+| .|+|.+|+..
T Consensus 284 sl~eAl~G~~~~i~~ldG~~l~V~Ip~g~ 312 (382)
T PRK14291 284 TVAEAVLGTELEVPLLDGKKEKVKIPPGT 312 (382)
T ss_pred eHHHHhCCCEEEEecCCCCEEEEEECCcc
Confidence 333445545555555677 6899999764
No 123
>TIGR00251 conserved hypothetical protein TIGR00251.
Probab=21.12 E-value=2.4e+02 Score=18.54 Aligned_cols=39 Identities=8% Similarity=0.245 Sum_probs=26.2
Q ss_pred EEECCCeEEEEEEc-CCCCCCCeEEEEeCC-cEEEEEEEEec
Q 043288 53 WKETPEAHVFKVDL-PGLTKEDVKLEIEDH-RVLQITADRNV 92 (156)
Q Consensus 53 i~e~~~~~~i~~~l-PG~~~edi~v~v~~g-~~L~I~g~~~~ 92 (156)
|.++++.++|.+.+ |+.+++.|.= +.++ ..|.|+-.-..
T Consensus 1 ~~~~~~g~~l~v~V~P~A~~~~i~g-~~~~~~~Lki~v~ApP 41 (87)
T TIGR00251 1 VRENDDGLLIRIYVQPKASKDSIVG-YNEWRKRVEVKIKAPP 41 (87)
T ss_pred CeEeCCeEEEEEEEeeCCCcceecc-ccCCCCeEEEEEecCC
Confidence 35678888898877 8888887743 4441 26777755443
No 124
>PRK13605 endoribonuclease SymE; Provisional
Probab=20.43 E-value=1.5e+02 Score=20.65 Aligned_cols=24 Identities=17% Similarity=0.360 Sum_probs=19.3
Q ss_pred CCCCC-CCeEEEEeCCcEEEEEEEEe
Q 043288 67 PGLTK-EDVKLEIEDHRVLQITADRN 91 (156)
Q Consensus 67 PG~~~-edi~v~v~~g~~L~I~g~~~ 91 (156)
.||.- ..|+|+|.+| .|+|+....
T Consensus 50 AGF~tG~~V~V~V~~G-~LVIt~~~~ 74 (113)
T PRK13605 50 AGFATGTAVDVRVMEG-CIVLTAQPP 74 (113)
T ss_pred hCCCCCCeEEEEEeCC-EEEEEeCCC
Confidence 47766 6899999987 899998765
No 125
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16. KRE6 is a Saccharomyces cerevisiae glucanase that participates in the synthesis of beta-1,6-glucan, a major structural component of the cell wall. It is a golgi membrane protein required for normal beta-1,6-glucan levels in the cell wall. KRE6 is closely realted to laminarinase, a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.
Probab=20.28 E-value=3.5e+02 Score=21.90 Aligned_cols=46 Identities=17% Similarity=0.151 Sum_probs=25.9
Q ss_pred CCCeEEEEeCCcEEEEEEEEeccccCC--CccEE---EEeeeceEEEEEEECCC
Q 043288 71 KEDVKLEIEDHRVLQITADRNVEREDK--NETWH---RVERSRGKFLRRFRLPE 119 (156)
Q Consensus 71 ~edi~v~v~~g~~L~I~g~~~~~~~~~--~~~~~---~~e~~~~~f~r~i~lP~ 119 (156)
++++ .+.+| .|+|++.+....... .+.+. +....+|.|+-++.||.
T Consensus 40 ~~nv--~v~~G-~L~I~a~~~~~~~~~ytSg~i~T~~k~~f~yG~~EaR~klp~ 90 (295)
T cd02180 40 PDAV--TTING-SLRITMDQFRNHGLNFRSGMLQSWNKLCFTGGYIEASASLPG 90 (295)
T ss_pred CcCe--EecCC-eEEEEEEeecCCCCCEEEEEEEECCcceeeCCEEEEEEECCC
Confidence 3444 55676 799998865321111 01111 12335678899999985
No 126
>PF14014 DUF4230: Protein of unknown function (DUF4230)
Probab=20.19 E-value=74 Score=22.57 Aligned_cols=29 Identities=14% Similarity=0.344 Sum_probs=20.2
Q ss_pred EECCCCCccCceE---EEE--eCCEEEEEEeccC
Q 043288 115 FRLPENGKIDQVR---ASI--EDGVLTVTVPKEE 143 (156)
Q Consensus 115 i~lP~~vd~~~i~---A~~--~nGvL~I~lPK~~ 143 (156)
..+-.++|.++++ -.. +++.|+|++|...
T Consensus 46 g~v~~GiDLs~i~~~~i~~d~~~~~i~I~LP~~~ 79 (157)
T PF14014_consen 46 GTVKAGIDLSKIKEEDIEVDEDGKTITITLPPPE 79 (157)
T ss_pred EEEEEEEEhHHCCcceEEEcCCCCEEEEECCCcE
Confidence 3344456667666 556 8889999999764
No 127
>PF13014 KH_3: KH domain
Probab=20.06 E-value=1.4e+02 Score=16.26 Aligned_cols=21 Identities=19% Similarity=0.487 Sum_probs=11.5
Q ss_pred EEEEeccCCCCCCeeEEecCC
Q 043288 136 TVTVPKEEVKKPELKAIEISG 156 (156)
Q Consensus 136 ~I~lPK~~~~~~~~~~I~I~~ 156 (156)
.|.+|+........+.|.|.|
T Consensus 23 ~I~i~~~~~~~~~~~~v~I~G 43 (43)
T PF13014_consen 23 KIQIPPENEPGSNERVVTITG 43 (43)
T ss_pred EEEECCccCCCCCceEEEEEC
Confidence 466666333344456666654
No 128
>COG2880 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.04 E-value=9.2 Score=24.10 Aligned_cols=11 Identities=45% Similarity=0.706 Sum_probs=9.7
Q ss_pred eEEEEeCCEEE
Q 043288 126 VRASIEDGVLT 136 (156)
Q Consensus 126 i~A~~~nGvL~ 136 (156)
|.|.|+||||.
T Consensus 7 IEaiYEnGVfK 17 (67)
T COG2880 7 IEAIYENGVLK 17 (67)
T ss_pred HHHHHhccccc
Confidence 77899999987
Done!