RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 043288
(156 letters)
>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone,
alpha-crystallin; 2.70A {Triticum aestivum} SCOP:
b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A
Length = 151
Score = 182 bits (465), Expect = 2e-60
Identities = 86/146 (58%), Positives = 111/146 (76%), Gaps = 1/146 (0%)
Query: 12 RDSILDPFSFDVWNPFKDF-AFPSLSSRFPRETSAIVNTRMDWKETPEAHVFKVDLPGLT 70
R ++ DPF+ +PF F + S ET+A N RMDWKETPEAHVFK DLPG+
Sbjct: 6 RSNVFDPFADLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVK 65
Query: 71 KEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASI 130
KE+VK+E+ED VL ++ +R E+EDKN+ WHRVERS GKF+RRFRL E+ K+++V+A +
Sbjct: 66 KEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGL 125
Query: 131 EDGVLTVTVPKEEVKKPELKAIEISG 156
E+GVLTVTVPK EVKKPE+KAI+ISG
Sbjct: 126 ENGVLTVTVPKAEVKKPEVKAIQISG 151
>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high
resolution, stress response, chaperone; 1.64A
{Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A
Length = 100
Score = 139 bits (352), Expect = 7e-44
Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 1/94 (1%)
Query: 50 RMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRG 109
R+D KE V DLPG+ ++++++ +L I +R E + E + R+ER G
Sbjct: 6 RVDIKEEVNHFVLYADLPGIDPSQIEVQMDK-GILSIRGERKSESSTETERFSRIERRYG 64
Query: 110 KFLRRFRLPENGKIDQVRASIEDGVLTVTVPKEE 143
F RRF LP++ D + A+ +GVL + +PK
Sbjct: 65 SFHRRFALPDSADADGITAAGRNGVLEIRIPKRP 98
>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain,
chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A
Length = 123
Score = 133 bits (336), Expect = 3e-41
Identities = 28/129 (21%), Positives = 47/129 (36%), Gaps = 7/129 (5%)
Query: 23 VWNPFKDFAFPSLSSRFPRETSAIVNTRMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHR 82
++ K+ S R +V +D E V DL G KE +K +
Sbjct: 1 MYYLGKELQ--KRSEELSRGFYELVYPPVDMYEEGGYLVVVADLAGFNKEKIKARVSGQN 58
Query: 83 VLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKID-QVRASIEDGVLTVTVPK 141
L I A+R + + + + RLP N D ++ E+GVLT+ +P
Sbjct: 59 ELIIEAEREITEPGV----KYLTQRPKYVRKVIRLPYNVAKDAEISGKYENGVLTIRIPI 114
Query: 142 EEVKKPELK 150
+ +
Sbjct: 115 AGTSVFKFE 123
>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A
{Methanocaldococcus jannaschii} PDB: 1shs_A
Length = 161
Score = 131 bits (332), Expect = 4e-40
Identities = 36/152 (23%), Positives = 53/152 (34%), Gaps = 5/152 (3%)
Query: 3 MIPSFFGNQRDSILDPFSFDVWNPFKDFAFPSLSSRFPRETSAIVNTRMDWKETPEAHVF 62
M FF P A S + + S + E +
Sbjct: 14 MFKEFFATPMT---GTTMIQSSTPLPPAAIESPAVAAGIQISGKGFMPISIIEGDQHIKV 70
Query: 63 KVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVE-RSRGKFLRRFRLPENG 121
LPG+ KED+ L L+I A R+ ++E E + R +LP
Sbjct: 71 IAWLPGVNKEDIILNAVG-DTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATV 129
Query: 122 KIDQVRASIEDGVLTVTVPKEEVKKPELKAIE 153
K + A E+GVL+V +PK E + IE
Sbjct: 130 KEENASAKFENGVLSVILPKAESSIKKGINIE 161
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 74.6 bits (183), Expect = 1e-17
Identities = 26/125 (20%), Positives = 58/125 (46%), Gaps = 10/125 (8%)
Query: 32 FPSLSSRFPRETSAIVNTRMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRN 91
F F R S + + + +D+ + E++K+++ +++
Sbjct: 47 FYLRPPSFLRAPSWFDTGLSEMRLEKDRFSVNLDVKHFSPEELKVKVLGDV-IEVHG--- 102
Query: 92 VEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASI-EDGVLTVTVPKEEVKKPELK 150
+ E++ + + R +F R++R+P + + +S+ DGVLTV P+++V PE +
Sbjct: 103 -KHEERQDEHGFISR---EFHRKYRIPADVDPLTITSSLSSDGVLTVNGPRKQVSGPE-R 157
Query: 151 AIEIS 155
I I+
Sbjct: 158 TIPIT 162
>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone,
stress protein, eye LEN protein, cataract; HET: MSE;
2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A
Length = 90
Score = 71.7 bits (176), Expect = 2e-17
Identities = 21/96 (21%), Positives = 48/96 (50%), Gaps = 9/96 (9%)
Query: 54 KETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLR 113
+ +D+ + E++K+++ V+++ + E++ + + R F R
Sbjct: 2 AMEKDRFSVNLDVKHFSPEELKVKVLG-DVIEVHG----KHEERQDEHGFISRE---FHR 53
Query: 114 RFRLPENGKIDQVRASI-EDGVLTVTVPKEEVKKPE 148
++R+P + + +S+ DGVLTV P+++V PE
Sbjct: 54 KYRIPADVDPLTITSSMSSDGVLTVNGPRKQVSGPE 89
>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
response; 1.12A {Rattus norvegicus}
Length = 101
Score = 69.4 bits (170), Expect = 2e-16
Identities = 16/102 (15%), Positives = 40/102 (39%), Gaps = 9/102 (8%)
Query: 54 KETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLR 113
P +D+ + E++ +++ +++ A E++ + + R +F R
Sbjct: 7 PTDPGYFSVLLDVKHFSPEEISVKVVG-DHVEVHA----RHEERPDEHGFIAR---EFHR 58
Query: 114 RFRLPENGKIDQVRASI-EDGVLTVTVPKEEVKKPELKAIEI 154
R+RLP V +++ +GVL++ +
Sbjct: 59 RYRLPPGVDPAAVTSALSPEGVLSIQATPASAQASLPSPPAA 100
>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone,
charcot-marie-tooth DISE neuronopathy, IG-like fold,
stress response; 2.00A {Homo sapiens} PDB: 3q9q_A
Length = 85
Score = 68.1 bits (167), Expect = 4e-16
Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Query: 54 KETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLR 113
T + +D+ +++ ++ +D V++IT ++ R+D++ R F R
Sbjct: 3 SHTADRWRVSLDVNHFAPDELTVKTKD-GVVEITG-KHAARQDEHGYISR------CFTR 54
Query: 114 RFRLPENGKIDQVRASI-EDGVLTVTVPKEE 143
++ LP QV +S+ +G LTV P +
Sbjct: 55 KYTLPPGVDPTQVSSSLSPEGTLTVEAPMPK 85
>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity,
protein aggregation, CRYS eye lens protein, chaperone;
1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A
Length = 106
Score = 64.5 bits (157), Expect = 1e-14
Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 12/106 (11%)
Query: 54 KETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLR 113
+ + V +D+ + ED+ +++++ V I + ++ + + R +F R
Sbjct: 8 RSDRDKFVIFLDVKHFSPEDLTVKVQEDFVE-IHG----KHNERQDDHGYISR---EFHR 59
Query: 114 RFRLPENGKIDQVRASI-EDGVLTVTVPKEEVKKPEL---KAIEIS 155
R+RLP N + S+ DG+LT + PK +AI +S
Sbjct: 60 RYRLPSNVDQSALSCSLSADGMLTFSGPKIPSGVDAGHSERAIPVS 105
>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone;
2.5A {Taenia saginata}
Length = 314
Score = 57.1 bits (137), Expect = 1e-10
Identities = 17/124 (13%), Positives = 38/124 (30%), Gaps = 5/124 (4%)
Query: 18 PFSFDVWNPFKDFAFPSLSSRFPRETSAIVNTRMDWKETPEAHVFKVDLPGLTKEDVKLE 77
+ + + + + H+ P +DVK+
Sbjct: 194 AIKLSPEKGLAIQPSEVQERQLAVKNKEGLEIVTAEDGSKKIHLELKVDPHFAPKDVKVW 253
Query: 78 IEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDGVLTV 137
+ ++V + + +T + +F + F PE + +A I DG++ V
Sbjct: 254 AKGNKVY-VHG----VTGKEEKTENASHSEHREFYKAFVTPEVVDASKTQAEIVDGLMVV 308
Query: 138 TVPK 141
P
Sbjct: 309 EAPL 312
Score = 51.4 bits (122), Expect = 1e-08
Identities = 21/142 (14%), Positives = 46/142 (32%), Gaps = 10/142 (7%)
Query: 3 MIPSFFGNQRDSILDPFSFDVWNPFKDFAFPSLSSRFPRETSAIVNTRMDWKETPEAHVF 62
+ D+ + ++ P L P E + + K+
Sbjct: 57 LFSLEPFTAMDNAFESVMKEMSAIQPREFHPELEYTQPGELDFLKDAYEVGKDGRLHFKV 116
Query: 63 KVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGK 122
++ E++ ++ + L + A ++V D + R LP +
Sbjct: 117 YFNVKNFKAEEITIKADK-NKLVVRAQKSVACGDAAMSES--------VGRSIPLPPSVD 167
Query: 123 IDQVRASI-EDGVLTVTVPKEE 143
+ ++A+I D VL + P E
Sbjct: 168 RNHIQATITTDDVLVIEAPVNE 189
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.3 bits (78), Expect = 0.013
Identities = 21/110 (19%), Positives = 34/110 (30%), Gaps = 38/110 (34%)
Query: 11 QRDSILDPFSFDVWNPFKDFAFP-----------SLSSRFPRE-TSAIVNTRMDWKETPE 58
+D + + SF+ KD P LS I+ + W+ T +
Sbjct: 440 NKDLVKNNVSFNA----KDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQ 495
Query: 59 A---HVFKVDL-PGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRV 104
H+ +D PG + +T RN + T RV
Sbjct: 496 FKATHI--LDFGPG----------GASGLGVLTH-RNKDG-----TGVRV 527
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta
strands, similar to P23, lacking LAST beta strand SEEN
in P23, protein degradation; NMR {Homo sapiens} SCOP:
b.15.1.3
Length = 114
Score = 29.9 bits (67), Expect = 0.16
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 48 NTRMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRV 83
+ DW +T V + + + K DV +E + +
Sbjct: 9 KIKYDWYQTESQVVITLMIKNVQKNDVNVEFSEKEL 44
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90;
chaperone-protein binding complex, stress response;
HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*
Length = 92
Score = 29.0 bits (65), Expect = 0.21
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 50 RMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRV 83
R ++ + PE V V G+ K++V ++ + +
Sbjct: 4 RHEYYQKPEEVVVTVFAKGIPKQNVNIDFGEQIL 37
>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex;
alpha-beta, riken structural genomics/proteomics
initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum}
SCOP: d.107.1.2
Length = 177
Score = 27.9 bits (61), Expect = 1.3
Identities = 18/94 (19%), Positives = 27/94 (28%), Gaps = 3/94 (3%)
Query: 17 DPFSFDV---WNPFKDFAFPSLSSRFPRETSAIVNTRMDWKETPEAHVFKVDLPGLTKED 73
D F + WNP K+ +P RF A N + T + + P
Sbjct: 15 DGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQ 74
Query: 74 VKLEIEDHRVLQITADRNVEREDKNETWHRVERS 107
V + T D + +E S
Sbjct: 75 VDYLLGRQAYSGKTDSEGGFESDAVAIANVLETS 108
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 1.5
Identities = 5/36 (13%), Positives = 17/36 (47%), Gaps = 6/36 (16%)
Query: 96 DKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIE 131
+K +++ S L+ + ++ ++A++E
Sbjct: 18 EKQAL-KKLQAS----LKLYA-DDSAPALAIKATME 47
Score = 26.1 bits (56), Expect = 4.7
Identities = 7/26 (26%), Positives = 11/26 (42%), Gaps = 10/26 (38%)
Query: 141 KEEVKKPE--LK--------AIEISG 156
K+ +KK + LK A+ I
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKA 44
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor
covalently bound to inhibitor; HET: P3F; 1.78A
{Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A*
1cl2_A*
Length = 415
Score = 27.6 bits (62), Expect = 2.0
Identities = 7/25 (28%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 48 NTRMDWKETPEAHVFKV-DLPGLTK 71
NT++ + E+P + +V D+P +
Sbjct: 167 NTKIVFLESPGSITMEVHDVPAIVA 191
>3pet_A Putative adhesin; right-handed beta-helix, structural genomics,
joint center F structural genomics, JCSG; HET: PG4;
2.07A {Bacteroides fragilis nctc 9343}
Length = 221
Score = 27.2 bits (60), Expect = 2.0
Identities = 7/45 (15%), Positives = 17/45 (37%), Gaps = 11/45 (24%)
Query: 123 IDQVRASIEDGVLTVTVPKE-----------EVKKPELKAIEISG 156
+ ++ +++D L +++ K + P L I G
Sbjct: 53 VALIQVAVKDNTLFLSIDKSKKVRNFKKMKITITSPTLNGISFKG 97
>2vu4_A Oxygen-evolving enhancer protein 2; kDa protein, transit peptide,
higher plants, photosynthes photosystem II, membrane,
thylakoid, chloroplast; 1.98A {Spinacia oleracea}
Length = 273
Score = 27.0 bits (58), Expect = 2.7
Identities = 19/106 (17%), Positives = 29/106 (27%), Gaps = 3/106 (2%)
Query: 5 PSFFGNQRDSILDPFSFDV---WNPFKDFAFPSLSSRFPRETSAIVNTRMDWKETPEAHV 61
P D F V WNP K+ FP R+ A N + + T + +
Sbjct: 99 PKKNTEFMPYNGDGFKLLVPSKWNPSKEKEFPGQVLRYEDNFDATSNLSVLVQPTDKKSI 158
Query: 62 FKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERS 107
P V + T + + +E S
Sbjct: 159 TDFGSPEDFLSQVDYLLGKQAYFGKTDSEGGFDSGVVASANVLESS 204
>4f0l_A Amidohydrolase; ssgcid, structural genomics, seattle structural
genomics CEN infectious disease; 2.05A {Brucella
melitensis biovar abortus}
Length = 458
Score = 26.9 bits (60), Expect = 3.1
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 66 LPGLTKEDVKLEIEDHRVLQITADRNVERED 96
LP E+V++ I + I +D
Sbjct: 21 LPDGWAENVRIGIAGGVICSIETGVLAGPDD 51
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane,
nucleotide-binding, translation; 2.80A {Escherichia
coli} PDB: 3deg_C*
Length = 599
Score = 27.0 bits (61), Expect = 3.3
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 63 KVDLPGLTKEDVKLEIED 80
K+DLP E V EIED
Sbjct: 132 KIDLPAADPERVAEEIED 149
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like
domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus}
PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Length = 600
Score = 26.7 bits (60), Expect = 3.6
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 63 KVDLPGLTKEDVKLEIED 80
K+DLP + VK +IE+
Sbjct: 134 KIDLPSADVDRVKKQIEE 151
>2cb5_A Protein (bleomycin hydrolase); aminopeptidase, cysteine protease,
SELF- compartmentalizing, cylinase; 1.85A {Homo sapiens}
SCOP: d.3.1.1 PDB: 1cb5_A
Length = 453
Score = 26.6 bits (58), Expect = 3.7
Identities = 23/105 (21%), Positives = 35/105 (33%), Gaps = 7/105 (6%)
Query: 51 MDWKETPEAHVFKVDLPGLTKED--VKLEIEDHRVLQITADRNVEREDKNETWHRVERSR 108
D VF V L + K + E + TA + +D T RVE S
Sbjct: 338 SDMNLYDHELVFGVSLKNMNKAERLTFGESLMTHAMTFTAVSEKDDQDGAFTKWRVENSW 397
Query: 109 GKFLRRFRLPENGKIDQVRASIEDGVLTVTVPKEEVKKPELKAIE 153
G+ G + + V V V ++ V + L +E
Sbjct: 398 GE-----DHGHKGYLCMTDEWFSEYVYEVVVDRKHVPEEVLAVLE 437
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.0 bits (56), Expect = 6.7
Identities = 24/165 (14%), Positives = 35/165 (21%), Gaps = 75/165 (45%)
Query: 15 ILDPFSFDVWNP--FKDFAFPSLSSRFPRETSAIVNTRMDWKETPEAHVFKVDLPGLTKE 72
+L +V N + F
Sbjct: 249 VLL----NVQNAKAWNAFNLSC-------------------------------------- 266
Query: 73 DVKLEIEDHRVLQITADRNV-EREDKNETWHR--VERSRG-----------KFL--RRFR 116
++L T + V + T H S K+L R
Sbjct: 267 ---------KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Query: 117 LPENGK------IDQVRASIEDGVLTVTVPKEEVKKPELKAIEIS 155
LP + + SI DG+ T K IE S
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362
>4a17_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila}
Length = 185
Score = 25.4 bits (55), Expect = 8.5
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 94 REDKNETWHRVERSRGKFLRRFRLPENGKID 124
R W R +R + LR++R KID
Sbjct: 88 RMPTKVLWMRRQRVLRRLLRKYR--AAKKID 116
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.401
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,474,539
Number of extensions: 140365
Number of successful extensions: 418
Number of sequences better than 10.0: 1
Number of HSP's gapped: 399
Number of HSP's successfully gapped: 40
Length of query: 156
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 70
Effective length of database: 4,300,587
Effective search space: 301041090
Effective search space used: 301041090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.1 bits)