RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 043288
         (156 letters)



>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum
           aestivum) [TaxId: 4565]}
          Length = 150

 Score =  124 bits (312), Expect = 7e-38
 Identities = 86/146 (58%), Positives = 110/146 (75%), Gaps = 1/146 (0%)

Query: 12  RDSILDPFSFDVWNPFKDFA-FPSLSSRFPRETSAIVNTRMDWKETPEAHVFKVDLPGLT 70
           R ++ DPF+    +PF  F       S    ET+A  N RMDWKETPEAHVFK DLPG+ 
Sbjct: 5   RSNVFDPFADLWADPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVK 64

Query: 71  KEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASI 130
           KE+VK+E+ED  VL ++ +R  E+EDKN+ WHRVERS GKF+RRFRL E+ K+++V+A +
Sbjct: 65  KEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGL 124

Query: 131 EDGVLTVTVPKEEVKKPELKAIEISG 156
           E+GVLTVTVPK EVKKPE+KAI+ISG
Sbjct: 125 ENGVLTVTVPKAEVKKPEVKAIQISG 150


>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 115

 Score = 82.4 bits (203), Expect = 1e-21
 Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 2/104 (1%)

Query: 51  MDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGK 110
           +   E  +       LPG+ KED+ L      +        +   +     +       +
Sbjct: 13  ISIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEE 72

Query: 111 FLRRFRLPENGKIDQVRASIEDGVLTVTVPKEEVKKPELKAIEI 154
             R  +LP   K +   A  E+GVL+V +PK E      K I I
Sbjct: 73  IYRTIKLPATVKEENASAKFENGVLSVILPKAESSIK--KGINI 114


>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 92

 Score = 32.6 bits (74), Expect = 0.005
 Identities = 13/94 (13%), Positives = 30/94 (31%), Gaps = 16/94 (17%)

Query: 50  RMDWKETPEAHVFKVDLPGLTKEDVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRG 109
           + DW +T    V  + +  + K DV +E  +  +  +    + E                
Sbjct: 4   KYDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGED--------------- 48

Query: 110 KFLRRFRLPENGKIDQVRASIEDGVLTVTVPKEE 143
            +  +  L      +Q    +    + + + K E
Sbjct: 49  -YNLKLELLHPIIPEQSTFKVLSTKIEIKLKKPE 81


>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId:
           10665]}
          Length = 282

 Score = 27.5 bits (60), Expect = 0.59
 Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 73  DVKLEIEDHRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPE-NGKI 123
           D+K+   D   ++I  + +   E ++      +    +F  RFR    +G+I
Sbjct: 2   DIKVHFHDFSHVRIDCEESTFHELRDFFSFEADGY--RFNPRFRYGNWDGRI 51


>d1vqop1 a.94.1.1 (P:1-143) Ribosomal protein L19 (L19e) {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 143

 Score = 25.8 bits (57), Expect = 1.5
 Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 2/31 (6%)

Query: 94  REDKNETWHRVERSRGKFLRRFRLPENGKID 124
           R++  E W    R++   LR  R  + G + 
Sbjct: 87  RQNSKEDWESRIRAQRTKLRELR--DEGTLS 115


>d1e9ma_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Rhodobacter capsulatus,
           ferredoxin VI [TaxId: 1061]}
          Length = 106

 Score = 23.5 bits (50), Expect = 9.9
 Identities = 4/20 (20%), Positives = 12/20 (60%)

Query: 125 QVRASIEDGVLTVTVPKEEV 144
           Q++ +     L V +P++++
Sbjct: 87  QIKVTSLLDGLVVHLPEKQI 106


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.136    0.401 

Gapped
Lambda     K      H
   0.267   0.0678    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 611,786
Number of extensions: 27372
Number of successful extensions: 75
Number of sequences better than 10.0: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 10
Length of query: 156
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 78
Effective length of database: 1,336,656
Effective search space: 104259168
Effective search space used: 104259168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (22.8 bits)