Query 043290
Match_columns 430
No_of_seqs 153 out of 1559
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 03:26:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043290.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043290hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02207 UDP-glycosyltransfera 100.0 2.5E-69 5.4E-74 518.0 42.7 416 1-430 1-425 (468)
2 PLN02410 UDP-glucoronosyl/UDP- 100.0 8.7E-69 1.9E-73 514.9 40.6 398 3-430 7-409 (451)
3 PLN03004 UDP-glycosyltransfera 100.0 3.3E-68 7.1E-73 508.8 40.6 416 1-430 1-423 (451)
4 PLN02167 UDP-glycosyltransfera 100.0 5.5E-68 1.2E-72 516.0 41.9 422 1-430 1-433 (475)
5 PLN02554 UDP-glycosyltransfera 100.0 4.1E-68 8.8E-73 517.7 39.7 420 1-429 1-438 (481)
6 PLN00164 glucosyltransferase; 100.0 1.6E-67 3.5E-72 511.4 41.5 416 1-430 1-430 (480)
7 PLN03015 UDP-glucosyl transfer 100.0 2.4E-67 5.3E-72 502.1 40.9 413 1-429 1-424 (470)
8 PLN02152 indole-3-acetate beta 100.0 3.1E-67 6.8E-72 502.5 39.5 405 1-430 1-416 (455)
9 PLN02992 coniferyl-alcohol glu 100.0 4.9E-67 1.1E-71 503.0 39.4 406 3-430 5-426 (481)
10 PLN02670 transferase, transfer 100.0 1.3E-66 2.8E-71 499.8 38.2 406 3-430 6-428 (472)
11 PLN02173 UDP-glucosyl transfer 100.0 2.9E-66 6.4E-71 495.0 40.4 389 3-430 5-407 (449)
12 PLN02562 UDP-glycosyltransfera 100.0 9.4E-66 2E-70 495.5 41.2 394 3-430 6-412 (448)
13 PLN02555 limonoid glucosyltran 100.0 1.2E-65 2.6E-70 494.8 40.0 412 3-430 7-428 (480)
14 PLN00414 glycosyltransferase f 100.0 2.7E-65 5.9E-70 490.1 39.5 388 3-430 4-401 (446)
15 PLN02863 UDP-glucoronosyl/UDP- 100.0 2.9E-65 6.3E-70 493.9 39.5 407 2-429 8-431 (477)
16 PLN02208 glycosyltransferase f 100.0 2E-65 4.3E-70 490.5 37.8 390 1-430 1-400 (442)
17 PLN02534 UDP-glycosyltransfera 100.0 8.9E-65 1.9E-69 489.4 39.7 414 3-430 8-443 (491)
18 PLN02764 glycosyltransferase f 100.0 9.9E-65 2.2E-69 482.8 38.6 386 3-430 5-406 (453)
19 PLN02210 UDP-glucosyl transfer 100.0 3.7E-64 8E-69 484.9 39.9 393 3-430 8-414 (456)
20 PLN02448 UDP-glycosyltransfera 100.0 2.6E-63 5.6E-68 482.3 39.3 395 3-430 10-414 (459)
21 PLN03007 UDP-glucosyltransfera 100.0 5.7E-62 1.2E-66 475.3 39.9 411 3-430 5-439 (482)
22 PHA03392 egt ecdysteroid UDP-g 100.0 4.2E-47 9E-52 371.2 25.2 364 4-430 21-431 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 1.8E-47 3.8E-52 380.4 9.4 367 5-430 2-408 (500)
24 KOG1192 UDP-glucuronosyl and U 100.0 7.6E-43 1.7E-47 347.3 18.9 368 3-408 5-406 (496)
25 cd03784 GT1_Gtf_like This fami 100.0 4.5E-42 9.8E-47 332.7 21.3 351 4-430 1-371 (401)
26 TIGR01426 MGT glycosyltransfer 100.0 3.8E-40 8.2E-45 317.8 27.2 344 9-430 1-358 (392)
27 COG1819 Glycosyl transferases, 100.0 2E-37 4.3E-42 295.3 18.4 353 4-430 2-367 (406)
28 PF13528 Glyco_trans_1_3: Glyc 99.9 8.3E-21 1.8E-25 178.1 26.1 306 4-428 1-317 (318)
29 PRK12446 undecaprenyldiphospho 99.9 1.7E-20 3.8E-25 176.8 27.5 311 1-429 1-323 (352)
30 TIGR00661 MJ1255 conserved hyp 99.8 2.3E-18 4.9E-23 161.3 25.2 69 337-408 228-300 (321)
31 COG0707 MurG UDP-N-acetylgluco 99.7 2.6E-15 5.7E-20 140.0 26.9 307 5-430 2-323 (357)
32 PRK00726 murG undecaprenyldiph 99.7 5.2E-14 1.1E-18 134.3 25.6 83 339-430 236-323 (357)
33 cd03785 GT1_MurG MurG is an N- 99.7 3.2E-14 7E-19 135.4 23.7 313 5-430 1-323 (350)
34 TIGR03590 PseG pseudaminic aci 99.5 2E-11 4.3E-16 111.6 22.7 103 272-394 171-278 (279)
35 TIGR01133 murG undecaprenyldip 99.5 2.8E-11 6.1E-16 115.0 24.2 75 347-430 243-320 (348)
36 PF04101 Glyco_tran_28_C: Glyc 99.4 9E-15 2E-19 123.5 -1.0 135 273-430 1-143 (167)
37 PRK13609 diacylglycerol glucos 99.4 2.2E-10 4.7E-15 110.3 28.1 133 270-429 201-336 (380)
38 TIGR00215 lpxB lipid-A-disacch 99.4 5E-11 1.1E-15 114.3 19.8 74 347-430 260-346 (385)
39 COG4671 Predicted glycosyl tra 99.3 4E-10 8.7E-15 100.8 21.2 330 2-429 8-363 (400)
40 PF03033 Glyco_transf_28: Glyc 99.3 5.9E-12 1.3E-16 102.9 5.8 124 6-144 1-132 (139)
41 PRK13608 diacylglycerol glucos 99.2 1.9E-08 4.1E-13 97.0 25.0 130 270-429 201-336 (391)
42 PLN02605 monogalactosyldiacylg 99.1 1.3E-07 2.9E-12 91.0 27.1 79 338-429 265-345 (382)
43 PRK00025 lpxB lipid-A-disaccha 99.1 1.4E-08 2.9E-13 97.9 19.0 73 348-430 255-340 (380)
44 cd03814 GT1_like_2 This family 99.0 2.2E-06 4.7E-11 81.5 29.6 125 272-429 197-330 (364)
45 cd03800 GT1_Sucrose_synthase T 98.9 2.2E-06 4.8E-11 82.8 27.4 78 337-429 282-366 (398)
46 cd03823 GT1_ExpE7_like This fa 98.9 3.6E-06 7.7E-11 79.8 27.3 79 337-430 242-328 (359)
47 cd03794 GT1_wbuB_like This fam 98.8 5.3E-06 1.1E-10 79.4 25.0 131 271-429 219-363 (394)
48 PLN02871 UDP-sulfoquinovose:DA 98.7 1.3E-05 2.9E-10 79.3 27.3 125 272-430 263-399 (465)
49 TIGR03492 conserved hypothetic 98.7 2.1E-05 4.5E-10 75.8 26.0 79 340-430 281-363 (396)
50 cd03816 GT1_ALG1_like This fam 98.7 2.7E-05 5.9E-10 75.8 27.0 60 2-70 2-61 (415)
51 COG3980 spsG Spore coat polysa 98.6 5.3E-06 1.2E-10 72.6 18.2 115 271-406 158-275 (318)
52 cd03801 GT1_YqgM_like This fam 98.6 0.00014 3.1E-09 68.6 29.6 79 336-429 254-339 (374)
53 cd03818 GT1_ExpC_like This fam 98.6 0.00023 5E-09 68.9 31.3 80 338-430 281-365 (396)
54 cd03817 GT1_UGDG_like This fam 98.6 5.2E-05 1.1E-09 72.0 25.9 77 337-429 258-341 (374)
55 cd04962 GT1_like_5 This family 98.5 5.5E-05 1.2E-09 72.4 24.8 78 337-429 252-334 (371)
56 PRK10307 putative glycosyl tra 98.5 0.0002 4.4E-09 69.7 27.8 79 338-429 284-371 (412)
57 PRK05749 3-deoxy-D-manno-octul 98.5 0.00025 5.4E-09 69.4 28.3 79 339-430 303-387 (425)
58 cd03786 GT1_UDP-GlcNAc_2-Epime 98.5 3.1E-05 6.8E-10 74.0 21.5 132 270-430 197-336 (363)
59 TIGR03449 mycothiol_MshA UDP-N 98.5 0.00031 6.7E-09 68.2 28.3 77 338-429 283-366 (405)
60 cd03798 GT1_wlbH_like This fam 98.5 0.00072 1.6E-08 64.0 30.2 81 337-430 258-343 (377)
61 cd03808 GT1_cap1E_like This fa 98.5 0.00041 8.9E-09 65.3 28.3 131 271-429 187-327 (359)
62 cd03795 GT1_like_4 This family 98.4 0.00015 3.2E-09 68.8 24.5 128 272-430 191-331 (357)
63 cd03821 GT1_Bme6_like This fam 98.4 0.0004 8.7E-09 65.9 26.8 78 337-429 261-343 (375)
64 TIGR02472 sucr_P_syn_N sucrose 98.4 0.00035 7.5E-09 68.7 26.8 78 337-429 316-404 (439)
65 cd03825 GT1_wcfI_like This fam 98.4 0.00052 1.1E-08 65.3 27.4 78 337-429 243-328 (365)
66 PF04007 DUF354: Protein of un 98.3 0.00045 9.7E-09 64.3 24.3 108 270-401 178-290 (335)
67 TIGR02468 sucrsPsyn_pln sucros 98.3 0.00051 1.1E-08 72.4 26.9 81 337-430 547-636 (1050)
68 KOG3349 Predicted glycosyltran 98.3 4.4E-06 9.5E-11 65.7 9.0 112 272-400 4-127 (170)
69 cd03799 GT1_amsK_like This is 98.3 0.0011 2.3E-08 62.9 26.3 80 337-429 235-325 (355)
70 cd03822 GT1_ecORF704_like This 98.3 0.0009 2E-08 63.5 25.9 78 337-430 246-333 (366)
71 cd03805 GT1_ALG2_like This fam 98.3 0.00091 2E-08 64.6 25.7 77 337-429 279-362 (392)
72 cd03820 GT1_amsD_like This fam 98.2 0.0016 3.4E-08 61.0 26.4 78 338-430 235-318 (348)
73 cd03802 GT1_AviGT4_like This f 98.2 0.0004 8.8E-09 65.3 22.3 126 274-429 173-306 (335)
74 cd03796 GT1_PIG-A_like This fa 98.2 0.0012 2.6E-08 64.0 24.2 76 337-429 249-331 (398)
75 TIGR00236 wecB UDP-N-acetylglu 98.1 0.00072 1.6E-08 64.7 22.3 125 272-429 198-332 (365)
76 cd04951 GT1_WbdM_like This fam 98.1 0.0017 3.7E-08 61.6 24.1 76 337-429 244-324 (360)
77 cd05844 GT1_like_7 Glycosyltra 98.1 0.0019 4.2E-08 61.6 24.4 79 337-430 244-335 (367)
78 cd03811 GT1_WabH_like This fam 98.1 0.0019 4.1E-08 60.5 23.5 77 337-426 245-324 (353)
79 PLN02275 transferase, transfer 98.1 0.012 2.7E-07 56.3 28.9 75 338-429 286-371 (371)
80 TIGR02470 sucr_synth sucrose s 98.0 0.022 4.9E-07 58.9 30.7 80 337-429 618-707 (784)
81 cd03812 GT1_CapH_like This fam 98.0 0.019 4E-07 54.5 28.3 78 337-430 248-330 (358)
82 cd03819 GT1_WavL_like This fam 97.9 0.022 4.7E-07 54.0 28.2 132 271-428 184-327 (355)
83 PRK14089 ipid-A-disaccharide s 97.8 0.00025 5.4E-09 66.5 11.9 76 347-427 228-315 (347)
84 PRK01021 lpxB lipid-A-disaccha 97.8 0.0023 4.9E-08 63.5 17.8 183 217-429 368-569 (608)
85 cd04955 GT1_like_6 This family 97.7 0.031 6.7E-07 53.0 25.4 47 337-385 247-301 (363)
86 PLN00142 sucrose synthase 97.7 0.042 9E-07 57.1 27.0 116 22-142 319-440 (815)
87 cd03807 GT1_WbnK_like This fam 97.7 0.046 9.9E-07 51.4 27.0 75 338-429 251-330 (365)
88 PRK00654 glgA glycogen synthas 97.7 0.027 5.8E-07 55.8 24.6 83 336-429 335-426 (466)
89 TIGR03568 NeuC_NnaA UDP-N-acet 97.6 0.043 9.3E-07 52.4 24.0 129 271-429 201-337 (365)
90 COG1519 KdtA 3-deoxy-D-manno-o 97.6 0.067 1.4E-06 50.5 27.2 57 360-428 327-383 (419)
91 TIGR02149 glgA_Coryne glycogen 97.6 0.08 1.7E-06 50.9 27.4 78 339-429 261-350 (388)
92 cd03809 GT1_mtfB_like This fam 97.5 0.022 4.7E-07 53.9 20.1 77 336-429 251-334 (365)
93 PF02684 LpxB: Lipid-A-disacch 97.4 0.0057 1.2E-07 57.9 14.8 173 234-430 153-339 (373)
94 PF13844 Glyco_transf_41: Glyc 97.4 0.0013 2.8E-08 63.5 10.3 102 270-384 283-392 (468)
95 PF13692 Glyco_trans_1_4: Glyc 97.3 0.0018 3.9E-08 52.0 9.0 78 337-429 52-133 (135)
96 cd03804 GT1_wbaZ_like This fam 97.3 0.0015 3.2E-08 62.1 9.9 124 274-429 197-324 (351)
97 COG5017 Uncharacterized conser 97.2 0.0024 5.1E-08 49.7 7.7 105 274-404 2-120 (161)
98 cd04946 GT1_AmsK_like This fam 97.2 0.0085 1.8E-07 58.3 13.7 81 338-430 289-376 (407)
99 cd03792 GT1_Trehalose_phosphor 97.0 0.32 6.9E-06 46.6 25.8 46 337-384 251-305 (372)
100 PRK15427 colanic acid biosynth 97.0 0.013 2.8E-07 56.9 13.0 78 337-429 278-368 (406)
101 PLN02949 transferase, transfer 96.9 0.47 1E-05 46.8 26.0 48 337-386 334-388 (463)
102 PRK15179 Vi polysaccharide bio 96.9 0.7 1.5E-05 47.9 32.0 80 337-429 573-657 (694)
103 PF00534 Glycos_transf_1: Glyc 96.8 0.016 3.4E-07 48.7 10.3 78 337-429 72-156 (172)
104 PRK15484 lipopolysaccharide 1, 96.7 0.042 9.1E-07 52.9 14.2 81 336-430 255-343 (380)
105 PRK09922 UDP-D-galactose:(gluc 96.6 0.02 4.4E-07 54.6 10.7 130 272-430 180-323 (359)
106 PF02350 Epimerase_2: UDP-N-ac 96.6 0.0073 1.6E-07 57.1 7.4 128 269-429 178-316 (346)
107 COG0381 WecB UDP-N-acetylgluco 96.5 0.81 1.8E-05 43.0 21.5 128 270-430 203-340 (383)
108 cd01635 Glycosyltransferase_GT 96.1 0.44 9.4E-06 41.4 15.9 49 338-388 161-217 (229)
109 COG0763 LpxB Lipid A disacchar 95.9 0.31 6.7E-06 45.6 14.0 169 236-429 158-342 (381)
110 COG3914 Spy Predicted O-linked 95.9 0.062 1.3E-06 52.5 9.7 108 270-390 428-543 (620)
111 TIGR03088 stp2 sugar transfera 95.7 0.16 3.4E-06 48.6 12.0 77 338-429 255-336 (374)
112 cd03813 GT1_like_3 This family 95.3 0.33 7.1E-06 48.3 13.2 80 337-430 353-441 (475)
113 PF06722 DUF1205: Protein of u 95.1 0.029 6.3E-07 41.9 3.7 50 261-310 30-84 (97)
114 cd04950 GT1_like_1 Glycosyltra 94.9 0.3 6.6E-06 46.8 11.1 75 338-429 254-338 (373)
115 cd04949 GT1_gtfA_like This fam 94.8 0.35 7.5E-06 46.2 11.5 82 337-430 260-344 (372)
116 cd03806 GT1_ALG11_like This fa 94.8 4.4 9.5E-05 39.6 25.6 77 337-430 304-391 (419)
117 TIGR03087 stp1 sugar transfera 94.6 0.59 1.3E-05 45.2 12.4 76 338-430 280-361 (397)
118 KOG4626 O-linked N-acetylgluco 94.5 0.16 3.6E-06 50.0 8.0 122 270-407 757-889 (966)
119 PHA01633 putative glycosyl tra 94.4 1.5 3.2E-05 41.2 14.1 82 337-429 200-305 (335)
120 TIGR02918 accessory Sec system 93.8 1.2 2.7E-05 44.4 13.1 86 337-429 375-465 (500)
121 PRK14098 glycogen synthase; Pr 93.6 0.76 1.7E-05 45.8 11.2 84 335-429 359-449 (489)
122 PF13579 Glyco_trans_4_4: Glyc 93.6 0.2 4.2E-06 40.9 6.1 96 19-140 6-103 (160)
123 TIGR02095 glgA glycogen/starch 93.4 0.68 1.5E-05 46.0 10.6 135 272-429 291-435 (473)
124 cd03791 GT1_Glycogen_synthase_ 93.0 0.71 1.5E-05 45.8 10.1 82 337-429 350-440 (476)
125 PF13477 Glyco_trans_4_2: Glyc 92.5 0.92 2E-05 36.3 8.4 101 6-140 2-106 (139)
126 PF06258 Mito_fiss_Elm1: Mitoc 92.2 7.9 0.00017 36.0 15.0 80 347-429 221-309 (311)
127 PRK02261 methylaspartate mutas 91.9 3.4 7.4E-05 33.2 10.8 40 1-42 1-40 (137)
128 TIGR02193 heptsyl_trn_I lipopo 89.2 4.8 0.0001 37.5 10.9 135 270-429 178-319 (319)
129 PRK10125 putative glycosyl tra 88.3 4.7 0.0001 39.2 10.4 90 273-386 242-340 (405)
130 PRK09814 beta-1,6-galactofuran 88.0 1.1 2.4E-05 42.2 5.8 65 337-406 206-285 (333)
131 PF12000 Glyco_trans_4_3: Gkyc 87.5 7.9 0.00017 32.4 9.8 93 29-140 1-95 (171)
132 PLN02501 digalactosyldiacylgly 87.2 8.3 0.00018 39.8 11.5 73 339-429 602-679 (794)
133 PRK15490 Vi polysaccharide bio 87.1 9 0.00019 38.5 11.5 64 337-407 454-522 (578)
134 COG4370 Uncharacterized protei 85.7 1.1 2.5E-05 40.4 4.1 68 337-407 293-363 (412)
135 PLN02846 digalactosyldiacylgly 85.0 17 0.00037 35.8 12.3 42 342-385 288-333 (462)
136 PRK10017 colanic acid biosynth 84.6 9.1 0.0002 37.3 10.2 151 261-430 224-391 (426)
137 PF13439 Glyco_transf_4: Glyco 84.4 9.4 0.0002 31.3 9.3 28 13-42 11-38 (177)
138 PF01975 SurE: Survival protei 84.1 7.1 0.00015 33.5 8.2 36 6-44 3-38 (196)
139 cd02067 B12-binding B12 bindin 80.4 23 0.0005 27.3 9.4 35 5-41 1-35 (119)
140 PF07355 GRDB: Glycine/sarcosi 80.4 20 0.00044 33.5 10.1 29 13-42 30-58 (349)
141 PLN02939 transferase, transfer 79.0 36 0.00077 36.7 12.5 83 337-429 836-929 (977)
142 PLN02316 synthase/transferase 77.6 45 0.00099 36.4 13.1 83 337-429 899-996 (1036)
143 PF05159 Capsule_synth: Capsul 77.5 13 0.00027 33.8 8.1 43 339-384 184-226 (269)
144 PHA01630 putative group 1 glyc 76.6 34 0.00073 32.2 10.9 40 344-385 196-242 (331)
145 TIGR03713 acc_sec_asp1 accesso 75.8 4.8 0.0001 40.4 5.2 72 338-429 409-486 (519)
146 KOG3062 RNA polymerase II elon 75.8 29 0.00063 30.4 9.0 39 1-41 1-39 (281)
147 COG0496 SurE Predicted acid ph 75.5 19 0.00041 32.1 8.1 25 17-44 13-37 (252)
148 cd03789 GT1_LPS_heptosyltransf 73.8 14 0.0003 33.7 7.4 38 5-42 1-38 (279)
149 PLN02470 acetolactate synthase 72.7 21 0.00046 36.6 9.1 92 277-383 2-109 (585)
150 PRK05986 cob(I)alamin adenolsy 72.3 61 0.0013 27.7 12.0 106 1-123 20-126 (191)
151 PLN02846 digalactosyldiacylgly 71.0 5.6 0.00012 39.2 4.2 39 2-42 3-46 (462)
152 PF08660 Alg14: Oligosaccharid 70.3 61 0.0013 27.1 9.8 20 8-27 2-21 (170)
153 TIGR02195 heptsyl_trn_II lipop 70.1 95 0.0021 29.0 20.3 38 5-42 1-38 (334)
154 PRK13935 stationary phase surv 69.6 49 0.0011 29.7 9.5 22 20-44 16-37 (253)
155 cd03791 GT1_Glycogen_synthase_ 67.9 54 0.0012 32.4 10.7 25 17-43 19-43 (476)
156 TIGR00087 surE 5'/3'-nucleotid 67.7 65 0.0014 28.8 9.9 23 19-44 15-37 (244)
157 cd07025 Peptidase_S66 LD-Carbo 67.5 13 0.00029 34.0 5.8 78 282-387 44-123 (282)
158 PRK13932 stationary phase surv 65.9 61 0.0013 29.1 9.4 38 3-44 5-42 (257)
159 TIGR02201 heptsyl_trn_III lipo 65.6 46 0.00099 31.3 9.2 106 262-382 171-285 (344)
160 PRK10422 lipopolysaccharide co 65.0 53 0.0012 31.1 9.6 97 271-382 183-287 (352)
161 COG0801 FolK 7,8-dihydro-6-hyd 64.2 15 0.00033 30.2 4.8 29 273-301 3-31 (160)
162 PRK03359 putative electron tra 64.1 1.1E+02 0.0024 27.6 10.7 31 112-142 112-148 (256)
163 PRK13933 stationary phase surv 63.2 92 0.002 28.0 10.0 22 20-44 16-37 (253)
164 COG0438 RfaG Glycosyltransfera 62.2 1.2E+02 0.0027 27.4 13.0 77 338-429 257-340 (381)
165 PRK02797 4-alpha-L-fucosyltran 61.5 30 0.00066 31.9 6.6 78 338-426 206-289 (322)
166 PF02441 Flavoprotein: Flavopr 61.2 9.3 0.0002 30.2 3.1 36 4-42 1-36 (129)
167 PRK14099 glycogen synthase; Pr 61.1 14 0.00031 36.8 5.0 41 1-43 1-47 (485)
168 PRK08305 spoVFB dipicolinate s 60.8 10 0.00023 32.4 3.5 39 2-42 4-42 (196)
169 PRK12342 hypothetical protein; 60.2 1.2E+02 0.0025 27.4 10.1 31 112-142 109-145 (254)
170 TIGR00725 conserved hypothetic 59.7 96 0.0021 25.6 8.9 102 256-384 18-123 (159)
171 cd07038 TPP_PYR_PDC_IPDC_like 59.2 15 0.00032 30.4 4.1 27 357-383 60-92 (162)
172 COG0003 ArsA Predicted ATPase 59.2 1.1E+02 0.0023 28.7 10.0 41 4-46 2-43 (322)
173 COG2159 Predicted metal-depend 58.8 47 0.001 30.6 7.7 112 235-372 97-210 (293)
174 COG0859 RfaF ADP-heptose:LPS h 58.4 1.6E+02 0.0035 27.6 17.2 38 5-42 3-40 (334)
175 COG0299 PurN Folate-dependent 58.3 42 0.00091 28.6 6.5 117 272-427 52-171 (200)
176 TIGR00715 precor6x_red precorr 58.0 80 0.0017 28.4 8.8 28 112-140 65-99 (256)
177 COG2185 Sbm Methylmalonyl-CoA 57.3 17 0.00038 29.2 3.9 33 1-33 10-42 (143)
178 cd07062 Peptidase_S66_mccF_lik 57.0 22 0.00049 33.0 5.3 77 282-386 48-126 (308)
179 COG2894 MinD Septum formation 56.8 37 0.0008 29.7 6.0 36 5-42 3-40 (272)
180 TIGR02370 pyl_corrinoid methyl 56.3 1.1E+02 0.0023 26.3 9.0 39 3-43 84-122 (197)
181 cd03793 GT1_Glycogen_synthase_ 56.3 26 0.00056 35.4 5.8 39 347-385 467-507 (590)
182 PRK00346 surE 5'(3')-nucleotid 56.3 1.3E+02 0.0029 26.9 9.8 22 19-43 15-36 (250)
183 PF13524 Glyco_trans_1_2: Glyc 56.2 31 0.00068 25.0 5.1 53 363-430 9-61 (92)
184 PF01075 Glyco_transf_9: Glyco 55.8 25 0.00054 31.2 5.3 98 270-382 104-208 (247)
185 PF04413 Glycos_transf_N: 3-De 55.7 41 0.00088 28.6 6.3 35 6-40 23-59 (186)
186 cd01974 Nitrogenase_MoFe_beta 55.3 96 0.0021 30.4 9.7 26 112-140 377-402 (435)
187 COG3340 PepE Peptidase E [Amin 55.1 1.4E+02 0.0031 25.9 9.2 48 257-305 20-67 (224)
188 PF02142 MGS: MGS-like domain 55.0 29 0.00063 25.6 4.7 19 20-42 2-20 (95)
189 PF02951 GSH-S_N: Prokaryotic 54.0 18 0.00039 28.2 3.4 36 5-42 2-40 (119)
190 PRK10964 ADP-heptose:LPS hepto 53.9 72 0.0016 29.7 8.3 38 5-42 2-39 (322)
191 cd07039 TPP_PYR_POX Pyrimidine 53.3 45 0.00098 27.6 6.1 27 357-383 64-96 (164)
192 PRK14099 glycogen synthase; Pr 53.3 93 0.002 31.1 9.3 64 354-428 369-441 (485)
193 COG2086 FixA Electron transfer 53.2 1.6E+02 0.0035 26.5 9.8 30 112-141 111-146 (260)
194 TIGR02919 accessory Sec system 53.2 24 0.00052 34.6 5.0 77 338-429 328-409 (438)
195 PF06506 PrpR_N: Propionate ca 52.5 29 0.00063 29.1 4.9 67 354-428 32-121 (176)
196 cd01840 SGNH_hydrolase_yrhL_li 52.4 58 0.0013 26.3 6.6 38 270-308 50-87 (150)
197 PRK10916 ADP-heptose:LPS hepto 52.1 2.1E+02 0.0045 26.9 22.0 38 5-42 2-39 (348)
198 PRK13934 stationary phase surv 52.1 1.5E+02 0.0033 26.8 9.4 24 18-44 14-37 (266)
199 COG1737 RpiR Transcriptional r 52.0 83 0.0018 28.7 8.1 94 258-390 120-218 (281)
200 PHA02542 41 41 helicase; Provi 51.8 1.6E+02 0.0036 29.2 10.6 36 6-43 193-228 (473)
201 PF02310 B12-binding: B12 bind 51.6 25 0.00055 27.0 4.1 36 4-41 1-36 (121)
202 COG1618 Predicted nucleotide k 50.2 1E+02 0.0022 25.6 7.2 56 4-72 6-62 (179)
203 COG1663 LpxK Tetraacyldisaccha 50.1 45 0.00097 31.1 5.9 32 9-42 55-86 (336)
204 PRK13931 stationary phase surv 49.6 1.3E+02 0.0028 27.2 8.7 31 111-141 86-129 (261)
205 KOG0081 GTPase Rab27, small G 49.5 43 0.00093 27.4 5.0 48 97-144 108-166 (219)
206 TIGR02400 trehalose_OtsA alpha 49.2 52 0.0011 32.5 6.7 69 344-430 342-421 (456)
207 cd03412 CbiK_N Anaerobic cobal 49.0 33 0.00072 27.0 4.4 38 272-309 2-41 (127)
208 cd03788 GT1_TPS Trehalose-6-Ph 48.8 22 0.00047 35.3 4.0 70 343-430 346-426 (460)
209 cd01980 Chlide_reductase_Y Chl 47.6 1.7E+02 0.0037 28.5 10.0 27 111-140 349-375 (416)
210 PF02585 PIG-L: GlcNAc-PI de-N 47.6 70 0.0015 24.9 6.2 21 21-41 15-35 (128)
211 PF06180 CbiK: Cobalt chelatas 47.4 28 0.0006 31.4 4.1 37 273-309 3-42 (262)
212 TIGR02015 BchY chlorophyllide 46.1 2.1E+02 0.0046 28.0 10.3 27 111-140 354-380 (422)
213 cd02071 MM_CoA_mut_B12_BD meth 45.4 1.4E+02 0.0031 23.1 9.5 36 5-42 1-36 (122)
214 PF07429 Glyco_transf_56: 4-al 45.0 99 0.0021 29.1 7.3 81 338-429 245-331 (360)
215 cd03789 GT1_LPS_heptosyltransf 44.1 2.3E+02 0.0049 25.6 9.8 31 349-382 193-223 (279)
216 PF07894 DUF1669: Protein of u 44.0 40 0.00087 30.6 4.5 48 94-142 131-183 (284)
217 TIGR02095 glgA glycogen/starch 43.8 35 0.00076 33.8 4.7 37 5-43 2-44 (473)
218 cd03416 CbiX_SirB_N Sirohydroc 43.1 1.1E+02 0.0024 22.6 6.4 35 273-307 2-38 (101)
219 PRK07313 phosphopantothenoylcy 42.9 24 0.00051 29.9 2.8 37 1-42 1-37 (182)
220 PRK01077 cobyrinic acid a,c-di 42.8 2.4E+02 0.0052 27.8 10.3 40 1-42 1-41 (451)
221 PRK07710 acetolactate synthase 42.5 1.4E+02 0.0031 30.5 8.9 27 357-383 79-111 (571)
222 PF00731 AIRC: AIR carboxylase 42.5 1.8E+02 0.0038 23.8 7.6 34 273-308 2-35 (150)
223 cd00561 CobA_CobO_BtuR ATP:cor 42.5 1.9E+02 0.0042 23.8 12.2 103 4-123 3-106 (159)
224 cd03466 Nitrogenase_NifN_2 Nit 42.1 2.7E+02 0.0059 27.2 10.5 26 112-140 372-397 (429)
225 PRK08506 replicative DNA helic 42.0 1.5E+02 0.0032 29.6 8.6 37 6-44 195-231 (472)
226 PRK14092 2-amino-4-hydroxy-6-h 41.9 57 0.0012 27.0 4.8 30 270-299 6-35 (163)
227 PRK06321 replicative DNA helic 41.9 1.3E+02 0.0028 30.0 8.1 37 6-44 229-266 (472)
228 PF06925 MGDG_synth: Monogalac 41.8 86 0.0019 26.0 6.1 24 16-39 1-25 (169)
229 PF02016 Peptidase_S66: LD-car 41.6 26 0.00057 32.1 3.1 77 283-387 45-123 (284)
230 PRK10422 lipopolysaccharide co 41.2 3.1E+02 0.0067 25.8 10.5 39 4-42 6-44 (352)
231 PRK01231 ppnK inorganic polyph 41.1 1.7E+02 0.0037 27.0 8.4 29 354-384 62-94 (295)
232 PRK06749 replicative DNA helic 40.9 1.6E+02 0.0034 28.9 8.5 37 6-44 189-225 (428)
233 TIGR03087 stp1 sugar transfera 40.3 35 0.00076 32.8 4.0 28 13-43 13-40 (397)
234 COG1817 Uncharacterized protei 40.3 3.1E+02 0.0067 25.5 20.5 113 8-145 4-116 (346)
235 cd02070 corrinoid_protein_B12- 40.2 70 0.0015 27.5 5.4 37 3-41 82-118 (201)
236 PRK05595 replicative DNA helic 40.2 2.4E+02 0.0052 27.8 9.8 36 6-43 204-240 (444)
237 cd07035 TPP_PYR_POX_like Pyrim 39.6 64 0.0014 26.2 4.9 26 359-384 62-93 (155)
238 cd07037 TPP_PYR_MenD Pyrimidin 39.3 30 0.00065 28.6 2.9 26 358-383 62-93 (162)
239 PRK04940 hypothetical protein; 39.3 81 0.0017 26.6 5.4 33 112-144 60-93 (180)
240 PRK13982 bifunctional SbtC-lik 38.8 75 0.0016 31.5 5.9 38 3-42 256-305 (475)
241 PF12146 Hydrolase_4: Putative 37.8 64 0.0014 22.9 4.0 30 4-33 16-45 (79)
242 TIGR01498 folK 2-amino-4-hydro 37.5 37 0.00079 26.8 3.0 30 274-303 1-30 (127)
243 cd01965 Nitrogenase_MoFe_beta_ 37.5 4E+02 0.0087 26.0 11.4 26 112-140 371-396 (428)
244 PF02571 CbiJ: Precorrin-6x re 37.2 3.1E+02 0.0067 24.6 9.4 30 5-40 2-31 (249)
245 COG3660 Predicted nucleoside-d 37.2 1.9E+02 0.004 26.2 7.3 34 347-381 237-270 (329)
246 COG0299 PurN Folate-dependent 37.1 87 0.0019 26.7 5.2 44 97-140 13-57 (200)
247 PLN03063 alpha,alpha-trehalose 36.8 2.6E+02 0.0057 30.0 10.0 64 350-430 371-442 (797)
248 COG1703 ArgK Putative periplas 36.4 3.5E+02 0.0077 25.0 10.1 35 4-40 52-86 (323)
249 PRK08322 acetolactate synthase 36.2 1.3E+02 0.0027 30.6 7.4 28 356-383 63-96 (547)
250 smart00851 MGS MGS-like domain 34.9 1.7E+02 0.0038 21.1 7.7 27 111-137 54-89 (90)
251 PRK08760 replicative DNA helic 34.3 2.7E+02 0.0058 27.8 9.1 37 6-44 232-269 (476)
252 PF02350 Epimerase_2: UDP-N-ac 33.7 70 0.0015 30.3 4.8 43 93-141 54-99 (346)
253 TIGR02201 heptsyl_trn_III lipo 33.7 3.9E+02 0.0084 25.0 9.9 38 5-42 1-38 (344)
254 PRK13886 conjugal transfer pro 33.6 81 0.0018 28.1 4.8 40 1-42 1-40 (241)
255 PRK09620 hypothetical protein; 33.5 61 0.0013 28.6 4.0 26 13-42 27-52 (229)
256 PF02776 TPP_enzyme_N: Thiamin 33.2 96 0.0021 25.8 5.1 28 357-384 65-98 (172)
257 PRK11253 ldcA L,D-carboxypepti 33.1 1.2E+02 0.0026 28.1 6.1 29 281-310 46-76 (305)
258 TIGR02852 spore_dpaB dipicolin 32.9 47 0.001 28.2 3.1 36 5-42 2-37 (187)
259 cd03409 Chelatase_Class_II Cla 32.7 1.4E+02 0.0029 22.0 5.4 37 273-309 2-41 (101)
260 PRK06029 3-octaprenyl-4-hydrox 32.5 49 0.0011 28.1 3.1 37 1-42 1-38 (185)
261 PLN02316 synthase/transferase 32.1 77 0.0017 34.7 5.1 39 3-43 587-631 (1036)
262 PRK14077 pnk inorganic polypho 32.0 1.4E+02 0.0031 27.3 6.3 32 351-384 61-96 (287)
263 COG2861 Uncharacterized protei 31.9 2.6E+02 0.0055 24.9 7.3 42 91-137 133-177 (250)
264 PRK02395 hypothetical protein; 31.9 3.9E+02 0.0085 24.3 9.2 98 272-397 3-121 (279)
265 PRK00911 dihydroxy-acid dehydr 31.7 4.1E+02 0.0088 27.0 9.6 43 99-143 98-144 (552)
266 PRK14478 nitrogenase molybdenu 31.6 4E+02 0.0086 26.6 9.8 23 112-137 393-415 (475)
267 PRK02645 ppnK inorganic polyph 31.6 1.3E+02 0.0029 27.8 6.1 29 354-384 57-89 (305)
268 TIGR01425 SRP54_euk signal rec 31.6 3.8E+02 0.0082 26.3 9.3 39 5-45 102-140 (429)
269 PRK08057 cobalt-precorrin-6x r 31.5 3.8E+02 0.0083 24.0 8.9 29 111-140 64-99 (248)
270 PLN02935 Bifunctional NADH kin 31.5 87 0.0019 31.1 5.0 28 353-382 261-292 (508)
271 COG1154 Dxs Deoxyxylulose-5-ph 31.1 6E+02 0.013 26.1 10.7 51 363-429 565-622 (627)
272 PF04127 DFP: DNA / pantothena 30.7 46 0.00099 28.3 2.7 30 9-42 23-52 (185)
273 cd01968 Nitrogenase_NifE_I Nit 30.5 4.3E+02 0.0092 25.6 9.7 24 112-138 356-379 (410)
274 PF03853 YjeF_N: YjeF-related 30.2 1.1E+02 0.0024 25.4 4.9 38 4-42 26-63 (169)
275 TIGR01286 nifK nitrogenase mol 30.1 4.1E+02 0.0089 26.8 9.6 27 111-140 436-462 (515)
276 COG1797 CobB Cobyrinic acid a, 30.1 65 0.0014 31.2 3.8 29 10-40 8-36 (451)
277 PRK10867 signal recognition pa 29.9 3.7E+02 0.008 26.4 9.0 38 5-44 102-140 (433)
278 PLN02880 tyrosine decarboxylas 29.8 90 0.002 31.2 5.0 70 357-428 147-233 (490)
279 PRK13011 formyltetrahydrofolat 29.7 3.4E+02 0.0073 24.9 8.3 58 360-427 198-257 (286)
280 PRK09165 replicative DNA helic 29.6 3.6E+02 0.0079 27.0 9.2 37 6-44 220-271 (497)
281 TIGR00173 menD 2-succinyl-5-en 29.3 89 0.0019 30.6 4.8 26 357-382 64-95 (432)
282 TIGR00345 arsA arsenite-activa 29.2 1.9E+02 0.004 26.5 6.6 23 21-45 3-25 (284)
283 PRK12595 bifunctional 3-deoxy- 29.1 5.1E+02 0.011 24.7 10.1 127 274-429 120-249 (360)
284 PRK13010 purU formyltetrahydro 28.9 3.1E+02 0.0068 25.2 7.9 57 362-428 204-262 (289)
285 PRK08155 acetolactate synthase 28.9 2.6E+02 0.0056 28.5 8.3 27 357-383 77-109 (564)
286 COG2987 HutU Urocanate hydrata 28.7 1.6E+02 0.0036 28.6 6.0 44 340-383 465-510 (561)
287 PF08323 Glyco_transf_5: Starc 28.5 43 0.00093 29.9 2.3 24 18-43 20-43 (245)
288 PRK08199 thiamine pyrophosphat 28.5 2.1E+02 0.0045 29.2 7.5 27 357-383 72-104 (557)
289 COG1400 SEC65 Signal recogniti 28.4 44 0.00095 24.6 1.8 41 379-428 4-44 (93)
290 PRK06249 2-dehydropantoate 2-r 28.4 64 0.0014 30.0 3.5 35 1-42 3-37 (313)
291 COG2230 Cfa Cyclopropane fatty 28.3 28 0.00061 31.7 1.0 91 258-402 28-121 (283)
292 PRK05647 purN phosphoribosylgl 28.2 3.9E+02 0.0084 23.0 8.8 34 5-41 3-36 (200)
293 PRK06276 acetolactate synthase 28.0 1.1E+02 0.0023 31.5 5.3 27 357-383 64-96 (586)
294 TIGR01283 nifE nitrogenase mol 28.0 5.7E+02 0.012 25.2 10.3 25 112-139 395-419 (456)
295 KOG4166 Thiamine pyrophosphate 27.8 95 0.0021 29.9 4.3 76 259-370 450-527 (675)
296 PRK04885 ppnK inorganic polyph 27.7 62 0.0013 29.3 3.1 28 355-384 36-69 (265)
297 PRK04761 ppnK inorganic polyph 27.4 67 0.0015 28.7 3.2 27 355-383 26-56 (246)
298 TIGR03457 sulphoacet_xsc sulfo 27.3 5E+02 0.011 26.6 10.0 28 356-383 64-97 (579)
299 TIGR03845 sulfopyru_alph sulfo 27.3 1.8E+02 0.0038 23.9 5.5 25 359-383 62-91 (157)
300 TIGR01761 thiaz-red thiazoliny 27.3 3.9E+02 0.0086 25.3 8.5 62 344-405 52-120 (343)
301 PRK02155 ppnK NAD(+)/NADH kina 27.2 77 0.0017 29.2 3.7 28 354-383 63-94 (291)
302 cd02015 TPP_AHAS Thiamine pyro 27.2 3.7E+02 0.0081 22.5 9.2 20 291-310 59-78 (186)
303 PRK07773 replicative DNA helic 27.2 4.2E+02 0.0091 28.9 9.7 37 6-44 220-257 (886)
304 cd01977 Nitrogenase_VFe_alpha 27.2 2.9E+02 0.0063 26.9 7.9 25 112-139 358-382 (415)
305 PRK08862 short chain dehydroge 27.0 3.6E+02 0.0079 23.4 8.0 31 5-40 6-36 (227)
306 PRK11889 flhF flagellar biosyn 27.0 5.6E+02 0.012 25.1 9.3 38 4-43 242-279 (436)
307 PRK08527 acetolactate synthase 26.9 1E+02 0.0022 31.4 4.9 27 357-383 67-99 (563)
308 PRK07206 hypothetical protein; 26.7 2E+02 0.0044 27.8 6.8 31 5-42 4-34 (416)
309 PRK12475 thiamine/molybdopteri 26.7 3.2E+02 0.0069 25.8 7.8 34 2-41 23-56 (338)
310 CHL00099 ilvB acetohydroxyacid 26.6 91 0.002 32.0 4.5 27 357-383 77-109 (585)
311 PRK14569 D-alanyl-alanine synt 26.5 1.2E+02 0.0026 27.9 4.9 38 1-40 1-42 (296)
312 PLN02590 probable tyrosine dec 26.5 1.8E+02 0.0039 29.5 6.4 70 357-428 195-281 (539)
313 COG0205 PfkA 6-phosphofructoki 26.3 4E+02 0.0086 25.3 8.2 48 260-310 57-104 (347)
314 TIGR01196 edd 6-phosphoglucona 26.3 7.3E+02 0.016 25.5 10.3 33 111-143 142-179 (601)
315 PLN02263 serine decarboxylase 26.3 96 0.0021 30.7 4.3 82 341-427 137-224 (470)
316 PF07015 VirC1: VirC1 protein; 26.1 4.6E+02 0.01 23.2 11.3 39 6-46 4-43 (231)
317 PF00282 Pyridoxal_deC: Pyrido 25.9 1.5E+02 0.0032 28.4 5.5 68 357-428 104-188 (373)
318 COG0541 Ffh Signal recognition 25.9 5.2E+02 0.011 25.3 8.9 60 5-68 102-161 (451)
319 COG4029 Uncharacterized protei 25.8 1.9E+02 0.0041 22.5 4.8 50 256-306 17-68 (142)
320 PRK06276 acetolactate synthase 25.8 3.4E+02 0.0073 27.9 8.5 32 7-41 66-97 (586)
321 TIGR00708 cobA cob(I)alamin ad 25.7 4E+02 0.0087 22.3 10.6 39 4-42 6-45 (173)
322 PRK10239 2-amino-4-hydroxy-6-h 25.7 1.2E+02 0.0025 25.1 4.1 31 273-303 3-34 (159)
323 PRK06456 acetolactate synthase 25.2 1.3E+02 0.0029 30.6 5.4 27 357-383 69-101 (572)
324 COG2109 BtuR ATP:corrinoid ade 25.1 4.4E+02 0.0095 22.6 11.3 103 4-123 29-133 (198)
325 TIGR00853 pts-lac PTS system, 25.1 2.1E+02 0.0045 21.2 5.0 39 1-41 1-39 (95)
326 PRK05636 replicative DNA helic 24.9 3.1E+02 0.0067 27.6 7.7 37 6-44 268-305 (505)
327 cd01141 TroA_d Periplasmic bin 24.9 1.2E+02 0.0025 25.4 4.3 30 111-140 68-99 (186)
328 COG1066 Sms Predicted ATP-depe 24.9 5.6E+02 0.012 25.0 8.8 34 6-42 96-129 (456)
329 PRK07525 sulfoacetaldehyde ace 24.7 98 0.0021 31.8 4.3 27 357-383 69-101 (588)
330 KOG3446 NADH:ubiquinone oxidor 24.6 1.3E+02 0.0028 21.7 3.5 45 377-429 50-94 (97)
331 PF06506 PrpR_N: Propionate ca 24.6 1.1E+02 0.0025 25.5 4.0 44 96-145 112-155 (176)
332 cd02069 methionine_synthase_B1 24.5 1.7E+02 0.0037 25.5 5.2 38 3-42 88-125 (213)
333 cd01423 MGS_CPS_I_III Methylgl 24.5 3.2E+02 0.007 20.8 6.7 30 273-305 2-31 (116)
334 TIGR00118 acolac_lg acetolacta 24.5 1.4E+02 0.0029 30.5 5.3 27 357-383 65-97 (558)
335 TIGR01284 alt_nitrog_alph nitr 24.4 2.7E+02 0.0059 27.5 7.2 25 112-139 395-419 (457)
336 PF06204 CBM_X: Putative carbo 24.3 40 0.00086 23.1 1.0 24 344-367 23-46 (66)
337 cd03818 GT1_ExpC_like This fam 24.2 3.2E+02 0.007 26.1 7.7 25 286-310 10-34 (396)
338 TIGR03609 S_layer_CsaB polysac 24.1 3.9E+02 0.0084 24.4 7.9 37 350-391 246-282 (298)
339 TIGR00665 DnaB replicative DNA 24.1 6.8E+02 0.015 24.4 10.2 38 6-45 198-236 (434)
340 TIGR02482 PFKA_ATP 6-phosphofr 23.9 82 0.0018 29.2 3.2 41 351-391 86-130 (301)
341 PF09884 DUF2111: Uncharacteri 23.8 25 0.00053 25.1 -0.1 20 368-387 50-69 (84)
342 PRK02231 ppnK inorganic polyph 23.7 1E+02 0.0022 28.1 3.8 35 347-383 35-73 (272)
343 PRK10499 PTS system N,N'-diace 23.6 2E+02 0.0042 21.8 4.8 35 1-35 1-35 (106)
344 PRK11269 glyoxylate carboligas 23.6 96 0.0021 31.9 4.1 27 357-383 69-101 (591)
345 PRK06882 acetolactate synthase 23.6 1.5E+02 0.0032 30.4 5.4 27 357-383 68-100 (574)
346 PRK06270 homoserine dehydrogen 23.5 5.2E+02 0.011 24.4 8.7 40 347-386 80-131 (341)
347 PRK05858 hypothetical protein; 23.5 1.3E+02 0.0028 30.5 4.9 26 358-383 69-100 (542)
348 PF00448 SRP54: SRP54-type pro 23.5 4.7E+02 0.01 22.3 7.7 38 6-45 4-41 (196)
349 PF04558 tRNA_synt_1c_R1: Glut 23.4 64 0.0014 26.8 2.2 28 390-429 103-130 (164)
350 TIGR00521 coaBC_dfp phosphopan 23.3 83 0.0018 30.4 3.3 39 1-42 1-39 (390)
351 PRK00771 signal recognition pa 22.8 5.8E+02 0.013 25.1 8.9 37 5-43 97-133 (437)
352 cd01424 MGS_CPS_II Methylglyox 22.8 3.4E+02 0.0073 20.4 7.9 24 15-42 10-33 (110)
353 PRK05579 bifunctional phosphop 22.5 87 0.0019 30.3 3.2 39 1-42 4-42 (399)
354 TIGR00959 ffh signal recogniti 22.4 7E+02 0.015 24.5 9.4 37 5-43 101-138 (428)
355 PLN02939 transferase, transfer 22.3 1.5E+02 0.0032 32.3 5.0 39 3-43 481-525 (977)
356 PRK11557 putative DNA-binding 22.3 4.5E+02 0.0098 23.7 7.9 88 259-385 119-211 (278)
357 PRK08266 hypothetical protein; 22.2 1.4E+02 0.003 30.3 4.8 26 358-383 70-101 (542)
358 PF01995 DUF128: Domain of unk 22.2 5E+02 0.011 23.1 7.6 81 270-384 144-224 (236)
359 COG0426 FpaA Uncharacterized f 22.0 2.2E+02 0.0048 27.3 5.7 51 256-307 232-282 (388)
360 KOG3125 Thymidine kinase [Nucl 21.8 5.2E+02 0.011 22.3 7.4 96 270-406 25-137 (234)
361 PRK08978 acetolactate synthase 21.8 1.5E+02 0.0032 30.2 4.9 26 358-383 65-96 (548)
362 PF01210 NAD_Gly3P_dh_N: NAD-d 21.7 43 0.00093 27.4 0.9 30 6-42 2-31 (157)
363 TIGR03088 stp2 sugar transfera 21.7 6.7E+02 0.014 23.4 10.4 27 13-41 13-39 (374)
364 PRK05632 phosphate acetyltrans 21.6 9.6E+02 0.021 25.3 12.0 39 1-42 1-40 (684)
365 TIGR00147 lipid kinase, YegS/R 21.5 2.8E+02 0.0061 25.3 6.4 25 360-384 61-91 (293)
366 PRK11064 wecC UDP-N-acetyl-D-m 21.3 1.2E+02 0.0025 29.6 3.9 34 1-41 1-34 (415)
367 cd02034 CooC The accessory pro 21.3 2E+02 0.0043 22.2 4.5 36 5-42 1-36 (116)
368 PLN02929 NADH kinase 21.3 1.8E+02 0.004 26.9 4.9 29 354-384 64-95 (301)
369 TIGR02177 PorB_KorB 2-oxoacid: 21.3 5.6E+02 0.012 23.5 8.0 14 416-429 160-173 (287)
370 cd02040 NifH NifH gene encodes 21.3 1.4E+02 0.0031 26.7 4.3 38 1-42 1-38 (270)
371 PRK05920 aromatic acid decarbo 21.2 1.1E+02 0.0024 26.5 3.3 36 4-42 4-39 (204)
372 TIGR01007 eps_fam capsular exo 21.2 1.9E+02 0.0041 24.6 4.9 36 4-41 17-54 (204)
373 PF03403 PAF-AH_p_II: Platelet 21.2 85 0.0019 30.2 2.9 28 5-32 101-128 (379)
374 PRK00784 cobyric acid synthase 21.1 8.2E+02 0.018 24.4 9.9 34 6-41 5-39 (488)
375 PF01903 CbiX: CbiX; InterPro 21.1 2.3E+02 0.005 21.0 4.8 37 360-396 60-104 (105)
376 cd03414 CbiX_SirB_C Sirohydroc 21.0 3.8E+02 0.0082 20.3 9.1 36 272-307 2-39 (117)
377 PRK11519 tyrosine kinase; Prov 20.9 1E+03 0.022 25.2 14.3 36 4-41 526-563 (719)
378 PRK06487 glycerate dehydrogena 20.8 5.2E+02 0.011 24.1 8.0 101 270-427 148-249 (317)
379 PF07801 DUF1647: Protein of u 20.8 3.4E+02 0.0074 21.9 5.7 65 3-72 59-123 (142)
380 COG2022 ThiG Uncharacterized e 20.7 1.6E+02 0.0035 25.9 4.1 49 379-428 131-181 (262)
381 PF05728 UPF0227: Uncharacteri 20.4 2.3E+02 0.005 24.0 5.1 31 114-144 61-92 (187)
382 PRK06932 glycerate dehydrogena 20.4 5.5E+02 0.012 23.9 8.0 101 270-426 147-248 (314)
383 PRK12315 1-deoxy-D-xylulose-5- 20.2 7.7E+02 0.017 25.3 9.7 52 362-429 524-580 (581)
384 TIGR00639 PurN phosphoribosylg 20.2 5.4E+02 0.012 21.9 9.1 35 5-42 2-36 (190)
385 TIGR01162 purE phosphoribosyla 20.2 4.8E+02 0.01 21.5 6.5 84 283-398 36-124 (156)
386 PRK06112 acetolactate synthase 20.1 1.3E+02 0.0028 30.9 4.1 26 358-383 76-107 (578)
387 TIGR02483 PFK_mixed phosphofru 20.1 1.1E+02 0.0023 28.8 3.2 39 352-390 90-131 (324)
388 PRK14098 glycogen synthase; Pr 20.1 1.5E+02 0.0033 29.6 4.5 38 4-43 6-49 (489)
389 TIGR02699 archaeo_AfpA archaeo 20.0 1.3E+02 0.0027 25.4 3.3 34 6-42 2-37 (174)
390 PF00920 ILVD_EDD: Dehydratase 20.0 1.6E+02 0.0034 29.5 4.4 44 98-143 67-114 (521)
391 PLN03028 pyrophosphate--fructo 20.0 3.9E+02 0.0085 27.6 7.3 48 258-310 134-183 (610)
No 1
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=2.5e-69 Score=518.00 Aligned_cols=416 Identities=53% Similarity=0.952 Sum_probs=314.4
Q ss_pred CCCcEEEEEcCCCCCCHHHHHHHHHHHHhCC--CCeEEEEEecCCCCChhhHHhhhhccCCCCCeEEEeCCCCCC-CCCC
Q 043290 1 MKKAELIFVPSPGIGHLVSTLEFAKHLTDRD--DRISVTLLSMKLAVAPWVDAYAKSLTDSQPRICIIDLPPVDP-PLPD 77 (430)
Q Consensus 1 m~~~~i~~~~~p~~GH~~P~l~La~~L~~rG--H~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~ 77 (430)
|+++||+++|+|++||++||++||+.|+++| .. ||+++++.++....+...++.....++|+|+.+++... ++..
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~--vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~ 78 (468)
T PLN02207 1 MRNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIR--ITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEEKPTLG 78 (468)
T ss_pred CCCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeE--EEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCCCCccc
Confidence 8999999999999999999999999999997 55 99999987653222333332212223699999996532 2111
Q ss_pred CCCCCHHHHHHHHHHhhhhhHHHHHHHhhccC---CCCceEEEEcCCcchHHHHHHhcCCceEEEecchhHHHHHHhhcc
Q 043290 78 VLKKSPEYFLSLVVESHLPNVKNIVSSRANSG---SLQVTGLVLDFFCVSMVDIAKELSLPSYIFLTSNLGFLGLMLYLP 154 (430)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~D~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~ 154 (430)
. ..+....+..+.....+.+++.+++++++. ..+++|||+|.+++|+..+|+++|||++.|++++++.++.+.+.+
T Consensus 79 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~ 157 (468)
T PLN02207 79 G-TQSVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLA 157 (468)
T ss_pred c-ccCHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhh
Confidence 1 123444444455556555566666665421 124599999999999999999999999999999999888887765
Q ss_pred cccccccc-cccCCCcccccCCCCCCccCCCCCcccccCCCchHHHHHHHHhhccCcEEEEcccccccHHHHHHhhc-CC
Q 043290 155 TRQDRIST-VFESSDHELLIPGITSPVPVCVLPSCLFNKDGGHATLVKLAQRFKDVDGIIVNTFHELEPYAVNAFSG-DL 232 (430)
Q Consensus 155 ~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~-~~ 232 (430)
...+.... .++..+.+..+|+++.+++..+++..+.... .+..+.+....+++.+++++||+++||..++..+.. ..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~vPgl~~~l~~~dlp~~~~~~~-~~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~~~~~~~~~ 236 (468)
T PLN02207 158 DRHSKDTSVFVRNSEEMLSIPGFVNPVPANVLPSALFVED-GYDAYVKLAILFTKANGILVNSSFDIEPYSVNHFLDEQN 236 (468)
T ss_pred hccccccccCcCCCCCeEECCCCCCCCChHHCcchhcCCc-cHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHHhccC
Confidence 43221100 0111123356899843688888887664333 345556666677888999999999999999888864 24
Q ss_pred CCCeEEeCccccCCCCCCCCCChhcHhHHHHHhhcCCCCcEEEEeecCCccCCHHHHHHHHHHHHhCCCcEEEEEecCCC
Q 043290 233 NPPLYTVGPVLHLKSQPNPDLDEAQYQKIFQWLDDLAESSVVFLCFGSSGSFDVAQVKEIAIGLERSGYNFLWSLRVSCP 312 (430)
Q Consensus 233 ~~~~~~VGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vVyvsfGS~~~~~~~~~~~~~~al~~~~~~~vw~~~~~~~ 312 (430)
.|+++.|||+........+......+++|.+|||++++++||||||||+...+.+++++++.+|+.++++|||+++....
T Consensus 237 ~p~v~~VGPl~~~~~~~~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW~~r~~~~ 316 (468)
T PLN02207 237 YPSVYAVGPIFDLKAQPHPEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLWSLRTEEV 316 (468)
T ss_pred CCcEEEecCCcccccCCCCccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEEEEeCCCc
Confidence 57899999997543211110001123689999999988899999999999999999999999999999999999985311
Q ss_pred CCccccccccCCCCCCChhHHHhhcCceEEEeccchhhhhccCceeEEEeccCchhHHHHHHhCCceeecccccccchhH
Q 043290 313 KDEASAHRYVTNNGVFPEGFLERIKGRGMICGWVPQVEILAHKAIGGFVSHCGWNSILESLWYGVPIATWPIYAEQQLNA 392 (430)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~pq~~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~DQ~~~a 392 (430)
...+.+|++|.++.++|+++++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||
T Consensus 317 ----------~~~~~lp~~f~er~~~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na 386 (468)
T PLN02207 317 ----------TNDDLLPEGFLDRVSGRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQQLNA 386 (468)
T ss_pred ----------cccccCCHHHHhhcCCCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCccccchhhH
Confidence 0123589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhceeEEeecccc-cCCcccCHhHHHHHHHHhhC
Q 043290 393 FRMVKEQGLALDLRLDYR-VGSDLVMACDIESAVRCLMD 430 (430)
Q Consensus 393 ~rv~~~~G~G~~~~~~~~-~~~~~~~~~~l~~ai~~vl~ 430 (430)
+++++.||+|+.+..++. +..+.+++++|+++|+++|+
T Consensus 387 ~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~ 425 (468)
T PLN02207 387 FLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMN 425 (468)
T ss_pred HHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHh
Confidence 999887799998854311 11235699999999999983
No 2
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=8.7e-69 Score=514.92 Aligned_cols=398 Identities=25% Similarity=0.408 Sum_probs=303.5
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecCCCCChhhHHhhhhccCCCCCeEEEeCCCCCCCC-CCCCCC
Q 043290 3 KAELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMKLAVAPWVDAYAKSLTDSQPRICIIDLPPVDPPL-PDVLKK 81 (430)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~ 81 (430)
+.||+++|+|++||++||++||+.|++||+. |||++++.++.. . .....+|+|..++++.|++ .+. .
T Consensus 7 ~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~--VT~v~T~~n~~~---~-----~~~~~~i~~~~ip~glp~~~~~~--~ 74 (451)
T PLN02410 7 RRRVVLVPVPAQGHISPMMQLAKTLHLKGFS--ITIAQTKFNYFS---P-----SDDFTDFQFVTIPESLPESDFKN--L 74 (451)
T ss_pred CCEEEEECCCccccHHHHHHHHHHHHcCCCE--EEEEeCcccccc---c-----ccCCCCeEEEeCCCCCCcccccc--c
Confidence 5699999999999999999999999999966 999999865421 0 0112369999999876653 222 1
Q ss_pred CHHHHHHHHHHhhhhhHHHHHHHhhccCCCCceEEEEcCCcchHHHHHHhcCCceEEEecchhHHHHHHhhccccccccc
Q 043290 82 SPEYFLSLVVESHLPNVKNIVSSRANSGSLQVTGLVLDFFCVSMVDIAKELSLPSYIFLTSNLGFLGLMLYLPTRQDRIS 161 (430)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~ 161 (430)
....++..+...+...+++.++++..+...+++|||+|.+++|+..+|+++|||++.|++++++.++++.++..+.....
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~ 154 (451)
T PLN02410 75 GPIEFLHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYANNV 154 (451)
T ss_pred CHHHHHHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhccC
Confidence 23345555555666777777777643333468999999999999999999999999999999998877776543322110
Q ss_pred -ccccC--CCcccccCCCCCCccCCCCCcccccCCC-chHHHHHHHHhhccCcEEEEcccccccHHHHHHhhcCCCCCeE
Q 043290 162 -TVFES--SDHELLIPGITSPVPVCVLPSCLFNKDG-GHATLVKLAQRFKDVDGIIVNTFHELEPYAVNAFSGDLNPPLY 237 (430)
Q Consensus 162 -~~~~~--~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~~~~ 237 (430)
.+... ......+|+++ +++..+++........ ....+ +....+++++++++|||++||+.++.++.....++++
T Consensus 155 ~~~~~~~~~~~~~~iPg~~-~~~~~dlp~~~~~~~~~~~~~~-~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~v~ 232 (451)
T PLN02410 155 LAPLKEPKGQQNELVPEFH-PLRCKDFPVSHWASLESIMELY-RNTVDKRTASSVIINTASCLESSSLSRLQQQLQIPVY 232 (451)
T ss_pred CCCccccccCccccCCCCC-CCChHHCcchhcCCcHHHHHHH-HHHhhcccCCEEEEeChHHhhHHHHHHHHhccCCCEE
Confidence 01111 11223578875 5666677654322111 12222 2222456788999999999999999999764446899
Q ss_pred EeCccccCCCCCCCCCChhcHhHHHHHhhcCCCCcEEEEeecCCccCCHHHHHHHHHHHHhCCCcEEEEEecCCCCCccc
Q 043290 238 TVGPVLHLKSQPNPDLDEAQYQKIFQWLDDLAESSVVFLCFGSSGSFDVAQVKEIAIGLERSGYNFLWSLRVSCPKDEAS 317 (430)
Q Consensus 238 ~VGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vVyvsfGS~~~~~~~~~~~~~~al~~~~~~~vw~~~~~~~~~~~~ 317 (430)
+|||+....... ... ....++|.+|||++++++||||||||+...+.+++++++.+|+.++++|||+++.....+
T Consensus 233 ~vGpl~~~~~~~-~~~-~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~~~--- 307 (451)
T PLN02410 233 PIGPLHLVASAP-TSL-LEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGSVRG--- 307 (451)
T ss_pred EecccccccCCC-ccc-cccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCcccc---
Confidence 999997543211 000 123457899999998899999999999999999999999999999999999998431100
Q ss_pred cccccCCCCCCChhHHHhhcCceEEEeccchhhhhccCceeEEEeccCchhHHHHHHhCCceeecccccccchhHHHHhh
Q 043290 318 AHRYVTNNGVFPEGFLERIKGRGMICGWVPQVEILAHKAIGGFVSHCGWNSILESLWYGVPIATWPIYAEQQLNAFRMVK 397 (430)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~pq~~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~ 397 (430)
+.....+|++|.+|.++|++|++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++
T Consensus 308 ----~~~~~~lp~~f~er~~~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~ 383 (451)
T PLN02410 308 ----SEWIESLPKEFSKIISGRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNARYLEC 383 (451)
T ss_pred ----cchhhcCChhHHHhccCCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHHHHHHHHH
Confidence 0011248999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhceeEEeecccccCCcccCHhHHHHHHHHhhC
Q 043290 398 EQGLALDLRLDYRVGSDLVMACDIESAVRCLMD 430 (430)
Q Consensus 398 ~~G~G~~~~~~~~~~~~~~~~~~l~~ai~~vl~ 430 (430)
.||+|+.+. . .+++++|+++|+++|+
T Consensus 384 ~~~~G~~~~-~------~~~~~~v~~av~~lm~ 409 (451)
T PLN02410 384 VWKIGIQVE-G------DLDRGAVERAVKRLMV 409 (451)
T ss_pred HhCeeEEeC-C------cccHHHHHHHHHHHHc
Confidence 889999886 3 6899999999999983
No 3
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=3.3e-68 Score=508.76 Aligned_cols=416 Identities=33% Similarity=0.645 Sum_probs=307.8
Q ss_pred CCCcEEEEEcCCCCCCHHHHHHHHHHHHhCC--CCeEEEEEecCCCCChhhHHhhhhccCCCCCeEEEeCCCCCCC-CCC
Q 043290 1 MKKAELIFVPSPGIGHLVSTLEFAKHLTDRD--DRISVTLLSMKLAVAPWVDAYAKSLTDSQPRICIIDLPPVDPP-LPD 77 (430)
Q Consensus 1 m~~~~i~~~~~p~~GH~~P~l~La~~L~~rG--H~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~ 77 (430)
|.+.||+++|+|++||++||+.||+.|+++| +.++||+++++.+... .+...++.....++|+|+.+++..+. +..
T Consensus 1 ~~~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~ 79 (451)
T PLN03004 1 MGEEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPES-TATYISSVSSSFPSITFHHLPAVTPYSSSS 79 (451)
T ss_pred CCCcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhh-hhhhhccccCCCCCeEEEEcCCCCCCCCcc
Confidence 7889999999999999999999999999998 6666666666532211 11111221112246999999977532 211
Q ss_pred CCCCCHHHHHHHHHHhhhhhHHHHHHHhhccCCCCceEEEEcCCcchHHHHHHhcCCceEEEecchhHHHHHHhhccccc
Q 043290 78 VLKKSPEYFLSLVVESHLPNVKNIVSSRANSGSLQVTGLVLDFFCVSMVDIAKELSLPSYIFLTSNLGFLGLMLYLPTRQ 157 (430)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 157 (430)
....+....+........+.+++.++++.. ..+++|||+|.+++|+..+|+++|||++.|++++++.++.+.+.+...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~ 157 (451)
T PLN03004 80 TSRHHHESLLLEILCFSNPSVHRTLFSLSR--NFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTID 157 (451)
T ss_pred ccccCHHHHHHHHHHhhhHHHHHHHHhcCC--CCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhcc
Confidence 111233334444455666677777776522 235699999999999999999999999999999999999888765332
Q ss_pred ccc-cccccCCCcccccCCCCCCccCCCCCcccccCCC-chHHHHHHHHhhccCcEEEEcccccccHHHHHHhhcCC-CC
Q 043290 158 DRI-STVFESSDHELLIPGITSPVPVCVLPSCLFNKDG-GHATLVKLAQRFKDVDGIIVNTFHELEPYAVNAFSGDL-NP 234 (430)
Q Consensus 158 ~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~-~~ 234 (430)
... ..... ...+..+|+++ .++..+++..++.... .+..+.+..+.+.+.+++++|||++||+.++.++.... .+
T Consensus 158 ~~~~~~~~~-~~~~v~iPg~p-~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~~~~~~ 235 (451)
T PLN03004 158 ETTPGKNLK-DIPTVHIPGVP-PMKGSDMPKAVLERDDEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAITEELCFR 235 (451)
T ss_pred ccccccccc-cCCeecCCCCC-CCChHHCchhhcCCchHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHHhcCCCC
Confidence 111 00011 11234678886 5777888876653321 24555666667778889999999999999999996532 36
Q ss_pred CeEEeCccccCCCCCCCCCChhcHhHHHHHhhcCCCCcEEEEeecCCccCCHHHHHHHHHHHHhCCCcEEEEEecCCCCC
Q 043290 235 PLYTVGPVLHLKSQPNPDLDEAQYQKIFQWLDDLAESSVVFLCFGSSGSFDVAQVKEIAIGLERSGYNFLWSLRVSCPKD 314 (430)
Q Consensus 235 ~~~~VGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vVyvsfGS~~~~~~~~~~~~~~al~~~~~~~vw~~~~~~~~~ 314 (430)
+++.|||+.......... ...+++|.+|||++++++||||||||+..++.+++++|+.+|+.++++|||+++.... .
T Consensus 236 ~v~~vGPl~~~~~~~~~~--~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~~~-~ 312 (451)
T PLN03004 236 NIYPIGPLIVNGRIEDRN--DNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNPPE-L 312 (451)
T ss_pred CEEEEeeeccCccccccc--cchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCcc-c
Confidence 799999997432111000 1124579999999988999999999999999999999999999999999999985310 0
Q ss_pred ccccccccCCCCCCChhHHHhhcCceEE-EeccchhhhhccCceeEEEeccCchhHHHHHHhCCceeecccccccchhHH
Q 043290 315 EASAHRYVTNNGVFPEGFLERIKGRGMI-CGWVPQVEILAHKAIGGFVSHCGWNSILESLWYGVPIATWPIYAEQQLNAF 393 (430)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~pq~~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~DQ~~~a~ 393 (430)
..+....+..+|++|.+|.+++..+ .+|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||+
T Consensus 313 ---~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~~na~ 389 (451)
T PLN03004 313 ---EKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRFNRV 389 (451)
T ss_pred ---cccccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccchhhHH
Confidence 0000011123789999998876555 599999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhceeEEeecccccCCcccCHhHHHHHHHHhhC
Q 043290 394 RMVKEQGLALDLRLDYRVGSDLVMACDIESAVRCLMD 430 (430)
Q Consensus 394 rv~~~~G~G~~~~~~~~~~~~~~~~~~l~~ai~~vl~ 430 (430)
++++.||+|+.++.+ +.+.+++++|+++|+++|+
T Consensus 390 ~~~~~~g~g~~l~~~---~~~~~~~e~l~~av~~vm~ 423 (451)
T PLN03004 390 MIVDEIKIAISMNES---ETGFVSSTEVEKRVQEIIG 423 (451)
T ss_pred HHHHHhCceEEecCC---cCCccCHHHHHHHHHHHhc
Confidence 998778999999753 1236799999999999984
No 4
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=5.5e-68 Score=515.99 Aligned_cols=422 Identities=54% Similarity=0.948 Sum_probs=310.8
Q ss_pred CCCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCCe-EEEEEecCCCCChhhHHhhhhccCCCCCeEEEeCCCCC-CCCCCC
Q 043290 1 MKKAELIFVPSPGIGHLVSTLEFAKHLTDRDDRI-SVTLLSMKLAVAPWVDAYAKSLTDSQPRICIIDLPPVD-PPLPDV 78 (430)
Q Consensus 1 m~~~~i~~~~~p~~GH~~P~l~La~~L~~rGH~v-~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~ 78 (430)
||++||+++|+|++||++||++||+.|+.||..+ .||++++..++....+...++.....++|+|+.+++.. +++.+.
T Consensus 1 ~~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~~~~ 80 (475)
T PLN02167 1 KKEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQDPPPMEL 80 (475)
T ss_pred CCccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCCCCccccc
Confidence 8899999999999999999999999999998543 36777765544321122232221222469999999764 221111
Q ss_pred CCCCHHHHHHHHHHhhhhhHHHHHHHhhccC---CC-CceEEEEcCCcchHHHHHHhcCCceEEEecchhHHHHHHhhcc
Q 043290 79 LKKSPEYFLSLVVESHLPNVKNIVSSRANSG---SL-QVTGLVLDFFCVSMVDIAKELSLPSYIFLTSNLGFLGLMLYLP 154 (430)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~-~~D~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~ 154 (430)
........+..+...+.+.+++.++++..+. .. +++|||+|.+++|+..+|+++|||++.|++++++.++.+++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~~~ 160 (475)
T PLN02167 81 FVKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKYLP 160 (475)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHHHH
Confidence 1112223444555666777788777765321 12 4699999999999999999999999999999999888877654
Q ss_pred ccccccccccc--CCCcccccCCCCCCccCCCCCcccccCCCchHHHHHHHHhhccCcEEEEcccccccHHHHHHhhcC-
Q 043290 155 TRQDRISTVFE--SSDHELLIPGITSPVPVCVLPSCLFNKDGGHATLVKLAQRFKDVDGIIVNTFHELEPYAVNAFSGD- 231 (430)
Q Consensus 155 ~~~~~~~~~~~--~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~- 231 (430)
...+.....+. +...+..+|+++..++..+++..+.... .+..+.+..+..++++++++|||++||+.++.++...
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~iPgl~~~l~~~dlp~~~~~~~-~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~~ 239 (475)
T PLN02167 161 ERHRKTASEFDLSSGEEELPIPGFVNSVPTKVLPPGLFMKE-SYEAWVEIAERFPEAKGILVNSFTELEPNAFDYFSRLP 239 (475)
T ss_pred HhccccccccccCCCCCeeECCCCCCCCChhhCchhhhCcc-hHHHHHHHHHhhcccCEeeeccHHHHHHHHHHHHHhhc
Confidence 32211110110 1112345788854567777776544322 3455566667778889999999999999999998653
Q ss_pred -CCCCeEEeCccccCCCCCCCCCChhcHhHHHHHhhcCCCCcEEEEeecCCccCCHHHHHHHHHHHHhCCCcEEEEEecC
Q 043290 232 -LNPPLYTVGPVLHLKSQPNPDLDEAQYQKIFQWLDDLAESSVVFLCFGSSGSFDVAQVKEIAIGLERSGYNFLWSLRVS 310 (430)
Q Consensus 232 -~~~~~~~VGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vVyvsfGS~~~~~~~~~~~~~~al~~~~~~~vw~~~~~ 310 (430)
..|++++|||+................++|.+|||++++++||||||||+...+.+++.+++.+|+.++++|||+++..
T Consensus 240 ~~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~~~~~flw~~~~~ 319 (475)
T PLN02167 240 ENYPPVYPVGPILSLKDRTSPNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALELVGCRFLWSIRTN 319 (475)
T ss_pred ccCCeeEEeccccccccccCCCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 3478999999975432110010012346899999999888999999999999999999999999999999999999853
Q ss_pred CCCCccccccccCCCCCCChhHHHhhcCceEEEeccchhhhhccCceeEEEeccCchhHHHHHHhCCceeecccccccch
Q 043290 311 CPKDEASAHRYVTNNGVFPEGFLERIKGRGMICGWVPQVEILAHKAIGGFVSHCGWNSILESLWYGVPIATWPIYAEQQL 390 (430)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~pq~~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~DQ~~ 390 (430)
.... ......+|++|.++.++++++++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.
T Consensus 320 ~~~~-------~~~~~~lp~~~~er~~~rg~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~ 392 (475)
T PLN02167 320 PAEY-------ASPYEPLPEGFMDRVMGRGLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPMYAEQQL 392 (475)
T ss_pred cccc-------cchhhhCChHHHHHhccCeeeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEeccccccchh
Confidence 1100 001235889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhceeEEeeccccc-CCcccCHhHHHHHHHHhhC
Q 043290 391 NAFRMVKEQGLALDLRLDYRV-GSDLVMACDIESAVRCLMD 430 (430)
Q Consensus 391 ~a~rv~~~~G~G~~~~~~~~~-~~~~~~~~~l~~ai~~vl~ 430 (430)
||+++++.||+|+.++.++.. ..+.+++++|+++|+++|+
T Consensus 393 na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~ 433 (475)
T PLN02167 393 NAFTMVKELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMD 433 (475)
T ss_pred hHHHHHHHhCeeEEeecccccccCCcccHHHHHHHHHHHhc
Confidence 998866667999988653110 1125799999999999983
No 5
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=4.1e-68 Score=517.67 Aligned_cols=420 Identities=46% Similarity=0.824 Sum_probs=312.0
Q ss_pred CCCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecCCCCChhh--HHhhhhccC-CCCCeEEEeCCCCCCCCCC
Q 043290 1 MKKAELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMKLAVAPWV--DAYAKSLTD-SQPRICIIDLPPVDPPLPD 77 (430)
Q Consensus 1 m~~~~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~--~~~~~~~~~-~~~~i~~~~~~~~~~~~~~ 77 (430)
|| +||+++|+|++||++||++||+.|+.||+.++|||++|+.++...+ +...++... ..++|+++.+++..++...
T Consensus 1 ~~-~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~ 79 (481)
T PLN02554 1 MK-IELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQPTTE 79 (481)
T ss_pred Cc-eEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCCccc
Confidence 54 5999999999999999999999999998567799999987654221 122222211 1336999999977532211
Q ss_pred CCCCCHHHHHHHHHHhhhhhHHHHHHHhhcc----CCCCceEEEEcCCcchHHHHHHhcCCceEEEecchhHHHHHHhhc
Q 043290 78 VLKKSPEYFLSLVVESHLPNVKNIVSSRANS----GSLQVTGLVLDFFCVSMVDIAKELSLPSYIFLTSNLGFLGLMLYL 153 (430)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~D~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~ 153 (430)
.. .+..+...+.+.+++.++++... ...+++|||+|.+++|+..+|+++|||++.|++++++.++.++++
T Consensus 80 ----~~--~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~ 153 (481)
T PLN02554 80 ----DP--TFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHV 153 (481)
T ss_pred ----ch--HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhh
Confidence 11 22334455666777777776532 112358999999999999999999999999999999999988887
Q ss_pred ccccccc-c--ccccCCCcccccCCCCCCccCCCCCcccccCCCchHHHHHHHHhhccCcEEEEcccccccHHHHHHhhc
Q 043290 154 PTRQDRI-S--TVFESSDHELLIPGITSPVPVCVLPSCLFNKDGGHATLVKLAQRFKDVDGIIVNTFHELEPYAVNAFSG 230 (430)
Q Consensus 154 ~~~~~~~-~--~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~ 230 (430)
+...+.. . ..+.+...+..+|+++.+++..+++..+.... ++..+.+..+.+.+++++++|||++||+.+..++.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~v~iPgl~~pl~~~dlp~~~~~~~-~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~~l~~ 232 (481)
T PLN02554 154 QMLYDEKKYDVSELEDSEVELDVPSLTRPYPVKCLPSVLLSKE-WLPLFLAQARRFREMKGILVNTVAELEPQALKFFSG 232 (481)
T ss_pred hhhccccccCccccCCCCceeECCCCCCCCCHHHCCCcccCHH-HHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHh
Confidence 5543221 0 01111113345888854677777876554322 455666777778889999999999999999999986
Q ss_pred C--CCCCeEEeCccccCCCCCCCCCChhcHhHHHHHhhcCCCCcEEEEeecCCccCCHHHHHHHHHHHHhCCCcEEEEEe
Q 043290 231 D--LNPPLYTVGPVLHLKSQPNPDLDEAQYQKIFQWLDDLAESSVVFLCFGSSGSFDVAQVKEIAIGLERSGYNFLWSLR 308 (430)
Q Consensus 231 ~--~~~~~~~VGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vVyvsfGS~~~~~~~~~~~~~~al~~~~~~~vw~~~ 308 (430)
. ..|++++|||+........... ...+++|.+|||++++++||||||||+...+.+++++++.+|++++++|||+++
T Consensus 233 ~~~~~~~v~~vGpl~~~~~~~~~~~-~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW~~~ 311 (481)
T PLN02554 233 SSGDLPPVYPVGPVLHLENSGDDSK-DEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLWSLR 311 (481)
T ss_pred cccCCCCEEEeCCCccccccccccc-cccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEEEEc
Confidence 4 4578999999943222110000 124568999999998889999999999999999999999999999999999998
Q ss_pred cCCCCCccc-cccccCCCCCCChhHHHhhcCceEEEeccchhhhhccCceeEEEeccCchhHHHHHHhCCceeecccccc
Q 043290 309 VSCPKDEAS-AHRYVTNNGVFPEGFLERIKGRGMICGWVPQVEILAHKAIGGFVSHCGWNSILESLWYGVPIATWPIYAE 387 (430)
Q Consensus 309 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~pq~~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~D 387 (430)
........+ ..+..+....+|++|.++.++|+++++|+||.+||+|+++++|||||||||++||+++|||||++|+++|
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~~P~~~D 391 (481)
T PLN02554 312 RASPNIMKEPPGEFTNLEEILPEGFLDRTKDIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMAAWPLYAE 391 (481)
T ss_pred CCcccccccccccccchhhhCChHHHHHhccCceEEeeCCHHHHhCCcccCcccccCccchHHHHHHcCCCEEecCcccc
Confidence 631100000 0000111123689999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHhhhhceeEEeecccc-----cCCcccCHhHHHHHHHHhh
Q 043290 388 QQLNAFRMVKEQGLALDLRLDYR-----VGSDLVMACDIESAVRCLM 429 (430)
Q Consensus 388 Q~~~a~rv~~~~G~G~~~~~~~~-----~~~~~~~~~~l~~ai~~vl 429 (430)
|+.||+++++.||+|+.+++... ...+.+++++|++||+++|
T Consensus 392 Q~~Na~~~v~~~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm 438 (481)
T PLN02554 392 QKFNAFEMVEELGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLM 438 (481)
T ss_pred chhhHHHHHHHhCceEEeeccccccccccccCeEcHHHHHHHHHHHh
Confidence 99999765555799999864210 0123689999999999998
No 6
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=1.6e-67 Score=511.41 Aligned_cols=416 Identities=42% Similarity=0.752 Sum_probs=310.0
Q ss_pred CCCcEEEEEcCCCCCCHHHHHHHHHHHHhCCC--CeEEEEEecCCCCCh---hhHHhhhhccCCCCCeEEEeCCCCC-CC
Q 043290 1 MKKAELIFVPSPGIGHLVSTLEFAKHLTDRDD--RISVTLLSMKLAVAP---WVDAYAKSLTDSQPRICIIDLPPVD-PP 74 (430)
Q Consensus 1 m~~~~i~~~~~p~~GH~~P~l~La~~L~~rGH--~v~Vt~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~-~~ 74 (430)
|+|+||+++|+|++||++||+.||+.|+.||+ .+.|||++++.+++. ..+..+.+......+|+|+.+++.. ++
T Consensus 1 ~~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~ 80 (480)
T PLN00164 1 MAAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVEPPT 80 (480)
T ss_pred CCCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCCCCC
Confidence 89999999999999999999999999999972 255999998765431 1222222111112259999999765 22
Q ss_pred CCCCCCCCHHHHHHHHHHhhhhhHHHHHHHhhccCCCCceEEEEcCCcchHHHHHHhcCCceEEEecchhHHHHHHhhcc
Q 043290 75 LPDVLKKSPEYFLSLVVESHLPNVKNIVSSRANSGSLQVTGLVLDFFCVSMVDIAKELSLPSYIFLTSNLGFLGLMLYLP 154 (430)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~ 154 (430)
+.+ +...++..+...+.+.+++.++++ ..+++|||+|.+++|+..+|+++|||++.|++++++.++++.+.+
T Consensus 81 ~~e----~~~~~~~~~~~~~~~~l~~~L~~l----~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~ 152 (480)
T PLN00164 81 DAA----GVEEFISRYIQLHAPHVRAAIAGL----SCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLP 152 (480)
T ss_pred ccc----cHHHHHHHHHHhhhHHHHHHHHhc----CCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhh
Confidence 221 333445445555666666666554 236799999999999999999999999999999999998888765
Q ss_pred cccccccccccCCCcccccCCCCCCccCCCCCcccccCC-CchHHHHHHHHhhccCcEEEEcccccccHHHHHHhhcCC-
Q 043290 155 TRQDRISTVFESSDHELLIPGITSPVPVCVLPSCLFNKD-GGHATLVKLAQRFKDVDGIIVNTFHELEPYAVNAFSGDL- 232 (430)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~- 232 (430)
...+....++.....+..+|+++ +++..+++..+.... ..+..+.+..+.+.+++++++|||+|||+.++.++....
T Consensus 153 ~~~~~~~~~~~~~~~~~~iPGlp-~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~ 231 (480)
T PLN00164 153 ALDEEVAVEFEEMEGAVDVPGLP-PVPASSLPAPVMDKKSPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAAIADGRC 231 (480)
T ss_pred hhcccccCcccccCcceecCCCC-CCChHHCCchhcCCCcHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHHHHhccc
Confidence 43222111111111234578886 577788886554322 124455555666778899999999999999999987531
Q ss_pred -----CCCeEEeCccccCCCCCCCCCChhcHhHHHHHhhcCCCCcEEEEeecCCccCCHHHHHHHHHHHHhCCCcEEEEE
Q 043290 233 -----NPPLYTVGPVLHLKSQPNPDLDEAQYQKIFQWLDDLAESSVVFLCFGSSGSFDVAQVKEIAIGLERSGYNFLWSL 307 (430)
Q Consensus 233 -----~~~~~~VGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vVyvsfGS~~~~~~~~~~~~~~al~~~~~~~vw~~ 307 (430)
.++++.|||+......... ...+++|.+|||++++++||||||||+...+.+++.+++.+|+.++++|||++
T Consensus 232 ~~~~~~~~v~~vGPl~~~~~~~~~---~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~flWv~ 308 (480)
T PLN00164 232 TPGRPAPTVYPIGPVISLAFTPPA---EQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFLWVL 308 (480)
T ss_pred cccCCCCceEEeCCCccccccCCC---ccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 3679999999743211100 23467899999999889999999999999999999999999999999999999
Q ss_pred ecCCCCCccccccccCCCCCCChhHHHhhcCceEEE-eccchhhhhccCceeEEEeccCchhHHHHHHhCCceeeccccc
Q 043290 308 RVSCPKDEASAHRYVTNNGVFPEGFLERIKGRGMIC-GWVPQVEILAHKAIGGFVSHCGWNSILESLWYGVPIATWPIYA 386 (430)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~pq~~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~ 386 (430)
+.....+...+.+ ......+|++|.++.+++++++ +|+||.+||+|+++++|||||||||++||+++|||||++|+++
T Consensus 309 ~~~~~~~~~~~~~-~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~P~~~ 387 (480)
T PLN00164 309 RGPPAAGSRHPTD-ADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWPLYA 387 (480)
T ss_pred cCCcccccccccc-cchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEEeCCccc
Confidence 8542111000000 0112347899999998888887 9999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHhhhhceeEEeecccccCCcccCHhHHHHHHHHhhC
Q 043290 387 EQQLNAFRMVKEQGLALDLRLDYRVGSDLVMACDIESAVRCLMD 430 (430)
Q Consensus 387 DQ~~~a~rv~~~~G~G~~~~~~~~~~~~~~~~~~l~~ai~~vl~ 430 (430)
||+.||+++++.||+|+.+..+.+ +++.+++++|+++|+++|.
T Consensus 388 DQ~~Na~~~~~~~gvG~~~~~~~~-~~~~~~~e~l~~av~~vm~ 430 (480)
T PLN00164 388 EQHLNAFELVADMGVAVAMKVDRK-RDNFVEAAELERAVRSLMG 430 (480)
T ss_pred cchhHHHHHHHHhCeEEEeccccc-cCCcCcHHHHHHHHHHHhc
Confidence 999999998877899999864311 1235799999999999983
No 7
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=2.4e-67 Score=502.11 Aligned_cols=413 Identities=32% Similarity=0.585 Sum_probs=305.1
Q ss_pred CCCcEEEEEcCCCCCCHHHHHHHHHHHHhC-CCCeEEEEEecCCCCChhh-HHhhhhccCCCCCeEEEeCCCCCCCCCCC
Q 043290 1 MKKAELIFVPSPGIGHLVSTLEFAKHLTDR-DDRISVTLLSMKLAVAPWV-DAYAKSLTDSQPRICIIDLPPVDPPLPDV 78 (430)
Q Consensus 1 m~~~~i~~~~~p~~GH~~P~l~La~~L~~r-GH~v~Vt~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 78 (430)
|.++||+++|+|++||++||+.||+.|+++ | ++||+++++.++.... +....... ...+|+++.+++...++...
T Consensus 1 ~~~pHvvl~P~p~qGHi~P~l~LAk~La~~~g--~~vT~v~t~~~~~~~~~~~~~~~~~-~~~~i~~~~lp~~~~~~l~~ 77 (470)
T PLN03015 1 MDQPHALLVASPGLGHLIPILELGNRLSSVLN--IHVTILAVTSGSSSPTETEAIHAAA-ARTTCQITEIPSVDVDNLVE 77 (470)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHhCCC--CeEEEEECCCchhhhcccccccccc-CCCceEEEECCCCccccCCC
Confidence 889999999999999999999999999987 8 5599998875543211 11111111 11259999998654322111
Q ss_pred CCCCHHHHHHHHHHhhhhhHHHHHHHhhccCCCCceEEEEcCCcchHHHHHHhcCCc-eEEEecchhHHHHHHhhccccc
Q 043290 79 LKKSPEYFLSLVVESHLPNVKNIVSSRANSGSLQVTGLVLDFFCVSMVDIAKELSLP-SYIFLTSNLGFLGLMLYLPTRQ 157 (430)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vV~D~~~~~~~~~A~~lgiP-~v~~~~~~~~~~~~~~~~~~~~ 157 (430)
.+.+....+....+.+.+.+++.++++. .+++|||+|.+++|+..+|+++||| .+.|++++++....+++++...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~----~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~ 153 (470)
T PLN03015 78 PDATIFTKMVVKMRAMKPAVRDAVKSMK----RKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLD 153 (470)
T ss_pred CCccHHHHHHHHHHhchHHHHHHHHhcC----CCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhh
Confidence 1113333344444566666777666552 3689999999999999999999999 5888888888777777665432
Q ss_pred ccccccccCCCcccccCCCCCCccCCCCCcccccCCC-chHHHHHHHHhhccCcEEEEcccccccHHHHHHhhcCC----
Q 043290 158 DRISTVFESSDHELLIPGITSPVPVCVLPSCLFNKDG-GHATLVKLAQRFKDVDGIIVNTFHELEPYAVNAFSGDL---- 232 (430)
Q Consensus 158 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~---- 232 (430)
+....+......+..+|+++ +++..+++..+..... .+..+.+..+.+.+++|+++|||++||+.++..+....
T Consensus 154 ~~~~~~~~~~~~~~~vPg~p-~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~~~~~~ 232 (470)
T PLN03015 154 TVVEGEYVDIKEPLKIPGCK-PVGPKELMETMLDRSDQQYKECVRSGLEVPMSDGVLVNTWEELQGNTLAALREDMELNR 232 (470)
T ss_pred cccccccCCCCCeeeCCCCC-CCChHHCCHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhhccccc
Confidence 21111110111235689986 6778888865543221 24444555566788999999999999999999987531
Q ss_pred --CCCeEEeCccccCCCCCCCCCChhcHhHHHHHhhcCCCCcEEEEeecCCccCCHHHHHHHHHHHHhCCCcEEEEEecC
Q 043290 233 --NPPLYTVGPVLHLKSQPNPDLDEAQYQKIFQWLDDLAESSVVFLCFGSSGSFDVAQVKEIAIGLERSGYNFLWSLRVS 310 (430)
Q Consensus 233 --~~~~~~VGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vVyvsfGS~~~~~~~~~~~~~~al~~~~~~~vw~~~~~ 310 (430)
.+++++|||+...... ...+++|.+|||++++++||||||||+..++.+++++++.+|+.++++|||+++..
T Consensus 233 ~~~~~v~~VGPl~~~~~~------~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r~~ 306 (470)
T PLN03015 233 VMKVPVYPIGPIVRTNVH------VEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLRRP 306 (470)
T ss_pred ccCCceEEecCCCCCccc------ccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 2569999999742211 12345899999999889999999999999999999999999999999999999753
Q ss_pred CCCCccccccccCCCCCCChhHHHhhcCceEEE-eccchhhhhccCceeEEEeccCchhHHHHHHhCCceeecccccccc
Q 043290 311 CPKDEASAHRYVTNNGVFPEGFLERIKGRGMIC-GWVPQVEILAHKAIGGFVSHCGWNSILESLWYGVPIATWPIYAEQQ 389 (430)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~pq~~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~DQ~ 389 (430)
.........+.+.....+|++|.++.+++++++ +|+||.+||+|+++++|||||||||++||+++|||||++|++.||+
T Consensus 307 ~~~~~~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~~~DQ~ 386 (470)
T PLN03015 307 ASYLGASSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYAEQW 386 (470)
T ss_pred ccccccccccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecccccchH
Confidence 110000000001122358999999999998766 9999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhhceeEEeecccccCCcccCHhHHHHHHHHhh
Q 043290 390 LNAFRMVKEQGLALDLRLDYRVGSDLVMACDIESAVRCLM 429 (430)
Q Consensus 390 ~~a~rv~~~~G~G~~~~~~~~~~~~~~~~~~l~~ai~~vl 429 (430)
.||+++++.||+|+.+... ...+.+++++|+++|+++|
T Consensus 387 ~na~~~~~~~gvg~~~~~~--~~~~~v~~e~i~~~v~~lm 424 (470)
T PLN03015 387 MNATLLTEEIGVAVRTSEL--PSEKVIGREEVASLVRKIV 424 (470)
T ss_pred HHHHHHHHHhCeeEEeccc--ccCCccCHHHHHHHHHHHH
Confidence 9999998888999998521 1123799999999999998
No 8
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=3.1e-67 Score=502.52 Aligned_cols=405 Identities=24% Similarity=0.381 Sum_probs=305.5
Q ss_pred CCCcEEEEEcCCCCCCHHHHHHHHHHHHh-CCCCeEEEEEecCCCCChhhHHhhhhccCCCCCeEEEeCCCCCCCCCCCC
Q 043290 1 MKKAELIFVPSPGIGHLVSTLEFAKHLTD-RDDRISVTLLSMKLAVAPWVDAYAKSLTDSQPRICIIDLPPVDPPLPDVL 79 (430)
Q Consensus 1 m~~~~i~~~~~p~~GH~~P~l~La~~L~~-rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 79 (430)
|+++||+++|+|++||++||++||+.|++ +|+. |||++++.+..+ ....+. ...++++|+.++++.+++.+..
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~--vT~v~t~~~~~~---~~~~~~-~~~~~i~~~~i~dglp~g~~~~ 74 (455)
T PLN02152 1 MAPPHFLLVTFPAQGHVNPSLRFARRLIKTTGTR--VTFATCLSVIHR---SMIPNH-NNVENLSFLTFSDGFDDGVISN 74 (455)
T ss_pred CCCcEEEEecCcccccHHHHHHHHHHHhhCCCcE--EEEEeccchhhh---hhhccC-CCCCCEEEEEcCCCCCCccccc
Confidence 88899999999999999999999999996 6955 999998843211 111111 1123699999987766553322
Q ss_pred CCCHHHHHHHHHHhhhhhHHHHHHHhhccCCCCceEEEEcCCcchHHHHHHhcCCceEEEecchhHHHHHHhhccccccc
Q 043290 80 KKSPEYFLSLVVESHLPNVKNIVSSRANSGSLQVTGLVLDFFCVSMVDIAKELSLPSYIFLTSNLGFLGLMLYLPTRQDR 159 (430)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 159 (430)
..+...++......+.+.+++.++++... ..+++|||+|.+++|+..+|+++|||++.|++++++.++.++++....
T Consensus 75 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~-~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~~-- 151 (455)
T PLN02152 75 TDDVQNRLVNFERNGDKALSDFIEANLNG-DSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTGN-- 151 (455)
T ss_pred cccHHHHHHHHHHhccHHHHHHHHHhhcc-CCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhccC--
Confidence 23444555556666777888877776421 235699999999999999999999999999999999888887654210
Q ss_pred ccccccCCCcccccCCCCCCccCCCCCcccccCC--C-chHHHHHHHHhhcc--CcEEEEcccccccHHHHHHhhcCCCC
Q 043290 160 ISTVFESSDHELLIPGITSPVPVCVLPSCLFNKD--G-GHATLVKLAQRFKD--VDGIIVNTFHELEPYAVNAFSGDLNP 234 (430)
Q Consensus 160 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~--~~~~~~~s~~~le~~~~~~~~~~~~~ 234 (430)
.....+|+++ +++..+++..+.... . ....+.+..+.++. .+++++|||++||+.++.++.. .
T Consensus 152 --------~~~~~iPglp-~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~---~ 219 (455)
T PLN02152 152 --------NSVFEFPNLP-SLEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPN---I 219 (455)
T ss_pred --------CCeeecCCCC-CCchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhc---C
Confidence 1234578886 577788887664321 1 23444455554443 4699999999999999999864 3
Q ss_pred CeEEeCccccCCC--CCCCC--CC-hhcHhHHHHHhhcCCCCcEEEEeecCCccCCHHHHHHHHHHHHhCCCcEEEEEec
Q 043290 235 PLYTVGPVLHLKS--QPNPD--LD-EAQYQKIFQWLDDLAESSVVFLCFGSSGSFDVAQVKEIAIGLERSGYNFLWSLRV 309 (430)
Q Consensus 235 ~~~~VGpl~~~~~--~~~~~--~~-~~~~~~l~~~l~~~~~~~vVyvsfGS~~~~~~~~~~~~~~al~~~~~~~vw~~~~ 309 (430)
+++.|||+.+... ....+ .. +..+.+|.+|||++++++||||||||+..++.+++++++.+|+.++++|||+++.
T Consensus 220 ~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~ 299 (455)
T PLN02152 220 EMVAVGPLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITD 299 (455)
T ss_pred CEEEEcccCccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEec
Confidence 6999999975321 00000 00 1224579999999988899999999999999999999999999999999999986
Q ss_pred CCCCCccccccccCCCCCCChhHHHhhcCceEEEeccchhhhhccCceeEEEeccCchhHHHHHHhCCceeecccccccc
Q 043290 310 SCPKDEASAHRYVTNNGVFPEGFLERIKGRGMICGWVPQVEILAHKAIGGFVSHCGWNSILESLWYGVPIATWPIYAEQQ 389 (430)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~pq~~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~DQ~ 389 (430)
..... ....+.+.....+|++|.++.++|++|++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+
T Consensus 300 ~~~~~-~~~~~~~~~~~~~~~~f~e~~~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~ 378 (455)
T PLN02152 300 KLNRE-AKIEGEEETEIEKIAGFRHELEEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQP 378 (455)
T ss_pred Ccccc-cccccccccccccchhHHHhccCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccccch
Confidence 31110 00000000011247899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhhceeEEeecccccCCcccCHhHHHHHHHHhhC
Q 043290 390 LNAFRMVKEQGLALDLRLDYRVGSDLVMACDIESAVRCLMD 430 (430)
Q Consensus 390 ~~a~rv~~~~G~G~~~~~~~~~~~~~~~~~~l~~ai~~vl~ 430 (430)
.||+++++.||+|+.+..+. ++.+++++|+++|+++|+
T Consensus 379 ~na~~~~~~~~~G~~~~~~~---~~~~~~e~l~~av~~vm~ 416 (455)
T PLN02152 379 ANAKLLEEIWKTGVRVRENS---EGLVERGEIRRCLEAVME 416 (455)
T ss_pred HHHHHHHHHhCceEEeecCc---CCcCcHHHHHHHHHHHHh
Confidence 99999999888888876431 225799999999999983
No 9
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=4.9e-67 Score=503.01 Aligned_cols=406 Identities=29% Similarity=0.547 Sum_probs=299.9
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHH-hCCCCeEEEEEecCCCCChhhHHhhhhccCCCCCeEEEeCCCCCCCCCCCCCC
Q 043290 3 KAELIFVPSPGIGHLVSTLEFAKHLT-DRDDRISVTLLSMKLAVAPWVDAYAKSLTDSQPRICIIDLPPVDPPLPDVLKK 81 (430)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~l~La~~L~-~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 81 (430)
|+||+++|+|++||++||+.||+.|+ ++|+. |||++++.+.... ..... ...+|+++.+++...++......
T Consensus 5 ~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~--vT~v~t~~n~~~~----~~~~~-~~~~i~~~~lp~p~~~glp~~~~ 77 (481)
T PLN02992 5 KPHAAMFSSPGMGHVIPVIELGKRLSANHGFH--VTVFVLETDAASA----QSKFL-NSTGVDIVGLPSPDISGLVDPSA 77 (481)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCcE--EEEEeCCCchhhh----hhccc-cCCCceEEECCCccccCCCCCCc
Confidence 67999999999999999999999998 78966 9999998654321 11111 12358999888632112110111
Q ss_pred CHHHHHHHHHHhhhhhHHHHHHHhhccCCCCceEEEEcCCcchHHHHHHhcCCceEEEecchhHHHHHHhhccccccccc
Q 043290 82 SPEYFLSLVVESHLPNVKNIVSSRANSGSLQVTGLVLDFFCVSMVDIAKELSLPSYIFLTSNLGFLGLMLYLPTRQDRIS 161 (430)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~ 161 (430)
+....+......+.+.++++++++ ..+++|||+|.+++|+..+|+++|||++.|++++++.++.+.+.+.+.....
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~----~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~ 153 (481)
T PLN02992 78 HVVTKIGVIMREAVPTLRSKIAEM----HQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDIK 153 (481)
T ss_pred cHHHHHHHHHHHhHHHHHHHHHhc----CCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhccccc
Confidence 222233333444555666666554 2378999999999999999999999999999999988877766543322111
Q ss_pred ccccCCCcccccCCCCCCccCCCCCcccccCC-CchHHHHHHHHhhccCcEEEEcccccccHHHHHHhhcC------CCC
Q 043290 162 TVFESSDHELLIPGITSPVPVCVLPSCLFNKD-GGHATLVKLAQRFKDVDGIIVNTFHELEPYAVNAFSGD------LNP 234 (430)
Q Consensus 162 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~------~~~ 234 (430)
.+...+..+..+|+++ +++..+++..+.... ..+..+.+....+.+++++++|||++||+.++.++... ..+
T Consensus 154 ~~~~~~~~~~~iPg~~-~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~~~~~~ 232 (481)
T PLN02992 154 EEHTVQRKPLAMPGCE-PVRFEDTLDAYLVPDEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLLGRVARV 232 (481)
T ss_pred cccccCCCCcccCCCC-ccCHHHhhHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhccccccccCC
Confidence 0110111234578886 567777775443322 13555666667777889999999999999999988642 125
Q ss_pred CeEEeCccccCCCCCCCCCChhcHhHHHHHhhcCCCCcEEEEeecCCccCCHHHHHHHHHHHHhCCCcEEEEEecCCCCC
Q 043290 235 PLYTVGPVLHLKSQPNPDLDEAQYQKIFQWLDDLAESSVVFLCFGSSGSFDVAQVKEIAIGLERSGYNFLWSLRVSCPKD 314 (430)
Q Consensus 235 ~~~~VGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vVyvsfGS~~~~~~~~~~~~~~al~~~~~~~vw~~~~~~~~~ 314 (430)
+++.|||+...... ...+++|.+|||++++++||||||||+..++.+++++++.+|+.++++|||+++......
T Consensus 233 ~v~~VGPl~~~~~~------~~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~~ 306 (481)
T PLN02992 233 PVYPIGPLCRPIQS------SKTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDGS 306 (481)
T ss_pred ceEEecCccCCcCC------CcchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCcccc
Confidence 79999999753221 224567999999998899999999999999999999999999999999999997431100
Q ss_pred ----ccc-ccc--ccCCCCCCChhHHHhhcCceEEE-eccchhhhhccCceeEEEeccCchhHHHHHHhCCceeeccccc
Q 043290 315 ----EAS-AHR--YVTNNGVFPEGFLERIKGRGMIC-GWVPQVEILAHKAIGGFVSHCGWNSILESLWYGVPIATWPIYA 386 (430)
Q Consensus 315 ----~~~-~~~--~~~~~~~~~~~~~~~~~~~~~v~-~~~pq~~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~ 386 (430)
..+ ..+ .+.....+|++|.+++++++.++ +|+||.+||+|+++++|||||||||++||+++|||||++|+++
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~~P~~~ 386 (481)
T PLN02992 307 ACSAYFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWPLFA 386 (481)
T ss_pred cccccccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCCEEecCccc
Confidence 000 000 01112358999999998887666 9999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHhhhhceeEEeecccccCCcccCHhHHHHHHHHhhC
Q 043290 387 EQQLNAFRMVKEQGLALDLRLDYRVGSDLVMACDIESAVRCLMD 430 (430)
Q Consensus 387 DQ~~~a~rv~~~~G~G~~~~~~~~~~~~~~~~~~l~~ai~~vl~ 430 (430)
||+.||+++++.+|+|+.++.. ++.++.++|+++|+++|+
T Consensus 387 DQ~~na~~~~~~~g~gv~~~~~----~~~~~~~~l~~av~~vm~ 426 (481)
T PLN02992 387 EQNMNAALLSDELGIAVRSDDP----KEVISRSKIEALVRKVMV 426 (481)
T ss_pred hhHHHHHHHHHHhCeeEEecCC----CCcccHHHHHHHHHHHhc
Confidence 9999999997557999998742 126899999999999983
No 10
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.3e-66 Score=499.78 Aligned_cols=406 Identities=24% Similarity=0.432 Sum_probs=291.4
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecCCCCChhhHHhhhhc-cCCCCCeEEEeCC----CCCCCCCC
Q 043290 3 KAELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMKLAVAPWVDAYAKSL-TDSQPRICIIDLP----PVDPPLPD 77 (430)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~----~~~~~~~~ 77 (430)
++||+++|+|++||++||++||+.|++||.. |||++++.++.. ..+. .....+|+++.++ ++.|++.+
T Consensus 6 ~~HVvl~P~paqGHi~P~l~LAk~La~~G~~--vT~v~t~~n~~~-----~~~~~~~~~~~i~~~~lp~p~~dglp~~~~ 78 (472)
T PLN02670 6 VLHVAMFPWLAMGHLIPFLRLSKLLAQKGHK--ISFISTPRNLHR-----LPKIPSQLSSSITLVSFPLPSVPGLPSSAE 78 (472)
T ss_pred CcEEEEeCChhhhHHHHHHHHHHHHHhCCCE--EEEEeCCchHHh-----hhhccccCCCCeeEEECCCCccCCCCCCcc
Confidence 5699999999999999999999999999955 999999865432 1111 1112358999888 33444433
Q ss_pred CCCCCHHHHHHHHHHhhhhhHHHHHHHhhccCCCCceEEEEcCCcchHHHHHHhcCCceEEEecchhHHHHHHhhccccc
Q 043290 78 VLKKSPEYFLSLVVESHLPNVKNIVSSRANSGSLQVTGLVLDFFCVSMVDIAKELSLPSYIFLTSNLGFLGLMLYLPTRQ 157 (430)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 157 (430)
.. .+.......++......+++.+++++++ .+++|||+|.+++|+..+|+++|||++.|++++++.++.+++.....
T Consensus 79 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~ 155 (472)
T PLN02670 79 SS-TDVPYTKQQLLKKAFDLLEPPLTTFLET--SKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLM 155 (472)
T ss_pred cc-cccchhhHHHHHHHHHHhHHHHHHHHHh--CCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhh
Confidence 21 1221010111222333444444444432 26899999999999999999999999999999998888776443222
Q ss_pred ccccccccCCCccc-ccCCCCC-----CccCCCCCcccccCC---CchHHHHHHHHhhccCcEEEEcccccccHHHHHHh
Q 043290 158 DRISTVFESSDHEL-LIPGITS-----PVPVCVLPSCLFNKD---GGHATLVKLAQRFKDVDGIIVNTFHELEPYAVNAF 228 (430)
Q Consensus 158 ~~~~~~~~~~~~~~-~~p~~~~-----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~ 228 (430)
..+. ........ .+|++.. .++..+++..+.... .....+.+....+.+++++++|||++||+.++.++
T Consensus 156 ~~~~--~~~~~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l~~l 233 (472)
T PLN02670 156 EGGD--LRSTAEDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWFDLL 233 (472)
T ss_pred hccc--CCCccccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHHHHH
Confidence 1111 11111111 1343210 133446665543211 12344455555667789999999999999999999
Q ss_pred hcCCCCCeEEeCccccCC-CCCCCC-CChhcHhHHHHHhhcCCCCcEEEEeecCCccCCHHHHHHHHHHHHhCCCcEEEE
Q 043290 229 SGDLNPPLYTVGPVLHLK-SQPNPD-LDEAQYQKIFQWLDDLAESSVVFLCFGSSGSFDVAQVKEIAIGLERSGYNFLWS 306 (430)
Q Consensus 229 ~~~~~~~~~~VGpl~~~~-~~~~~~-~~~~~~~~l~~~l~~~~~~~vVyvsfGS~~~~~~~~~~~~~~al~~~~~~~vw~ 306 (430)
+....++++.|||+.+.. ....+. .+...+++|.+|||++++++||||||||+..++.+++++++.+|+.++++|||+
T Consensus 234 ~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlWv 313 (472)
T PLN02670 234 SDLYRKPIIPIGFLPPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSETPFFWV 313 (472)
T ss_pred HHhhCCCeEEEecCCccccccccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEE
Confidence 763346799999996531 111000 001224689999999988899999999999999999999999999999999999
Q ss_pred EecCCCCCccccccccCCCCCCChhHHHhhcCceEEE-eccchhhhhccCceeEEEeccCchhHHHHHHhCCceeecccc
Q 043290 307 LRVSCPKDEASAHRYVTNNGVFPEGFLERIKGRGMIC-GWVPQVEILAHKAIGGFVSHCGWNSILESLWYGVPIATWPIY 385 (430)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~pq~~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~P~~ 385 (430)
++...... +.....+|++|.++.+++++++ +|+||.+||+|+++++|||||||||++||+++|||||++|++
T Consensus 314 ~r~~~~~~-------~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~ 386 (472)
T PLN02670 314 LRNEPGTT-------QNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVL 386 (472)
T ss_pred EcCCcccc-------cchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcch
Confidence 98531000 1112358999999999888886 999999999999999999999999999999999999999999
Q ss_pred cccchhHHHHhhhhceeEEeecccccCCcccCHhHHHHHHHHhhC
Q 043290 386 AEQQLNAFRMVKEQGLALDLRLDYRVGSDLVMACDIESAVRCLMD 430 (430)
Q Consensus 386 ~DQ~~~a~rv~~~~G~G~~~~~~~~~~~~~~~~~~l~~ai~~vl~ 430 (430)
+||+.||+++++ +|+|+.+.+.. .++.+++++|+++|+++|+
T Consensus 387 ~DQ~~Na~~v~~-~g~Gv~l~~~~--~~~~~~~e~i~~av~~vm~ 428 (472)
T PLN02670 387 NEQGLNTRLLHG-KKLGLEVPRDE--RDGSFTSDSVAESVRLAMV 428 (472)
T ss_pred hccHHHHHHHHH-cCeeEEeeccc--cCCcCcHHHHHHHHHHHhc
Confidence 999999999987 59999987531 1236899999999999983
No 11
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=2.9e-66 Score=495.03 Aligned_cols=389 Identities=25% Similarity=0.416 Sum_probs=298.3
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecCCCCChhhHHhhhhccCCCCCeEEEeCCCCCCCCCCCCCCC
Q 043290 3 KAELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMKLAVAPWVDAYAKSLTDSQPRICIIDLPPVDPPLPDVLKKS 82 (430)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 82 (430)
+.||+++|+|++||++||++||+.|+++|+. |||++|+.++.. ... ...++|+|+.++++.|++......+
T Consensus 5 ~~hvv~~P~paqGHi~P~l~lAk~La~~G~~--vT~v~t~~~~~~----~~~---~~~~~i~~~~ipdglp~~~~~~~~~ 75 (449)
T PLN02173 5 RGHVLAVPFPSQGHITPIRQFCKRLHSKGFK--TTHTLTTFIFNT----IHL---DPSSPISIATISDGYDQGGFSSAGS 75 (449)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHHcCCCE--EEEEECCchhhh----ccc---CCCCCEEEEEcCCCCCCcccccccC
Confidence 4599999999999999999999999999966 999999865432 100 1124599999998766532111223
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHhhccCCCCceEEEEcCCcchHHHHHHhcCCceEEEecchhHHHHHHhhcccccccccc
Q 043290 83 PEYFLSLVVESHLPNVKNIVSSRANSGSLQVTGLVLDFFCVSMVDIAKELSLPSYIFLTSNLGFLGLMLYLPTRQDRIST 162 (430)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (430)
...++..+...+.+.+++.++++..+ ..+++|||+|.+++|+..+|+++|||++.|++++++.+..+++. .. ..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~l~~~~~~-~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~-~~-~~--- 149 (449)
T PLN02173 76 VPEYLQNFKTFGSKTVADIIRKHQST-DNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLS-YI-NN--- 149 (449)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhhcc-CCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhH-Hh-cc---
Confidence 44555555556677777777665321 12349999999999999999999999999999988877555432 11 11
Q ss_pred cccCCCcccccCCCCCCccCCCCCcccccCC---CchHHHHHHHHhhccCcEEEEcccccccHHHHHHhhcCCCCCeEEe
Q 043290 163 VFESSDHELLIPGITSPVPVCVLPSCLFNKD---GGHATLVKLAQRFKDVDGIIVNTFHELEPYAVNAFSGDLNPPLYTV 239 (430)
Q Consensus 163 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~~~~~V 239 (430)
......+|+++ +++..+++..+.... ...+.+.+..+.+.+++++++|||++||+.++.++.. .++++.|
T Consensus 150 ----~~~~~~~pg~p-~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~--~~~v~~V 222 (449)
T PLN02173 150 ----GSLTLPIKDLP-LLELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSK--VCPVLTI 222 (449)
T ss_pred ----CCccCCCCCCC-CCChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHh--cCCeeEE
Confidence 01223468876 567778887664321 1234455666777888999999999999999998864 2579999
Q ss_pred CccccCC---CCC--CCCCC---h--hcHhHHHHHhhcCCCCcEEEEeecCCccCCHHHHHHHHHHHHhCCCcEEEEEec
Q 043290 240 GPVLHLK---SQP--NPDLD---E--AQYQKIFQWLDDLAESSVVFLCFGSSGSFDVAQVKEIAIGLERSGYNFLWSLRV 309 (430)
Q Consensus 240 Gpl~~~~---~~~--~~~~~---~--~~~~~l~~~l~~~~~~~vVyvsfGS~~~~~~~~~~~~~~al~~~~~~~vw~~~~ 309 (430)
||+.+.. ... ..... + ..+++|.+|||++++++||||||||+...+.+++.+++.+| ++++|+|+++.
T Consensus 223 GPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~~flWvvr~ 300 (449)
T PLN02173 223 GPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNFSYLWVVRA 300 (449)
T ss_pred cccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCCCEEEEEec
Confidence 9996421 000 00000 0 12356999999998899999999999999999999999999 78899999985
Q ss_pred CCCCCccccccccCCCCCCChhHHHhh-cCceEEEeccchhhhhccCceeEEEeccCchhHHHHHHhCCceeeccccccc
Q 043290 310 SCPKDEASAHRYVTNNGVFPEGFLERI-KGRGMICGWVPQVEILAHKAIGGFVSHCGWNSILESLWYGVPIATWPIYAEQ 388 (430)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~pq~~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~DQ 388 (430)
.. ...+|++|.++. ++|+++++|+||.+||+|+++++|||||||||++||+++|||||++|+++||
T Consensus 301 ~~-------------~~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ 367 (449)
T PLN02173 301 SE-------------ESKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQ 367 (449)
T ss_pred cc-------------hhcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcc
Confidence 31 134788888887 5789999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHhhhhceeEEeecccccCCcccCHhHHHHHHHHhhC
Q 043290 389 QLNAFRMVKEQGLALDLRLDYRVGSDLVMACDIESAVRCLMD 430 (430)
Q Consensus 389 ~~~a~rv~~~~G~G~~~~~~~~~~~~~~~~~~l~~ai~~vl~ 430 (430)
+.||+++++.||+|+.+..++. ++.++.++|+++|+++|+
T Consensus 368 ~~Na~~v~~~~g~Gv~v~~~~~--~~~~~~e~v~~av~~vm~ 407 (449)
T PLN02173 368 PMNAKYIQDVWKVGVRVKAEKE--SGIAKREEIEFSIKEVME 407 (449)
T ss_pred hHHHHHHHHHhCceEEEeeccc--CCcccHHHHHHHHHHHhc
Confidence 9999999998999999875421 125799999999999983
No 12
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=9.4e-66 Score=495.51 Aligned_cols=394 Identities=20% Similarity=0.372 Sum_probs=297.5
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecCCCCChhhHHhhhhccCCCCCeEEEeCCCCCCCCCCCCCCC
Q 043290 3 KAELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMKLAVAPWVDAYAKSLTDSQPRICIIDLPPVDPPLPDVLKKS 82 (430)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 82 (430)
++||+++|+|++||++||++||+.|+++|+. ||+++++.+... ....+ ...++|+|+.++++.+++. ..+
T Consensus 6 ~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~--VT~vtt~~~~~~----~~~~~-~~~~~i~~v~lp~g~~~~~---~~~ 75 (448)
T PLN02562 6 RPKIILVPYPAQGHVTPMLKLASAFLSRGFE--PVVITPEFIHRR----ISATL-DPKLGITFMSISDGQDDDP---PRD 75 (448)
T ss_pred CcEEEEEcCccccCHHHHHHHHHHHHhCCCE--EEEEeCcchhhh----hhhcc-CCCCCEEEEECCCCCCCCc---ccc
Confidence 5599999999999999999999999999977 999998854321 11111 1123699999987643321 112
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHhhccCCCCceEEEEcCCcchHHHHHHhcCCceEEEecchhHHHHHHhhccccccccc-
Q 043290 83 PEYFLSLVVESHLPNVKNIVSSRANSGSLQVTGLVLDFFCVSMVDIAKELSLPSYIFLTSNLGFLGLMLYLPTRQDRIS- 161 (430)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~- 161 (430)
...++..+...+.+.++++++++.. ..+++|||+|.++.|+..+|+++|||++.|++++++.+..+.+.+.+...+.
T Consensus 76 ~~~l~~a~~~~~~~~l~~ll~~l~~--~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~ 153 (448)
T PLN02562 76 FFSIENSMENTMPPQLERLLHKLDE--DGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLI 153 (448)
T ss_pred HHHHHHHHHHhchHHHHHHHHHhcC--CCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhcccc
Confidence 2233333333456666666665522 1256999999999999999999999999999999988777766543322211
Q ss_pred ccccCC--Ccc-cccCCCCCCccCCCCCcccccC--C-CchHHHHHHHHhhccCcEEEEcccccccHHHHHHhhc----C
Q 043290 162 TVFESS--DHE-LLIPGITSPVPVCVLPSCLFNK--D-GGHATLVKLAQRFKDVDGIIVNTFHELEPYAVNAFSG----D 231 (430)
Q Consensus 162 ~~~~~~--~~~-~~~p~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~----~ 231 (430)
...+.+ ..+ ..+|+++ .++..+++..+... . ..+..+.+..+...+++++++|||++||+.++..+.. .
T Consensus 154 ~~~~~~~~~~~~~~~Pg~~-~l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~ 232 (448)
T PLN02562 154 SETGCPRQLEKICVLPEQP-LLSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQASYNNG 232 (448)
T ss_pred ccccccccccccccCCCCC-CCChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHhhhccc
Confidence 000101 111 2578875 56777788755322 1 1245566666777788999999999999988877653 2
Q ss_pred CCCCeEEeCccccCCCCCCCCCC-hhcHhHHHHHhhcCCCCcEEEEeecCCc-cCCHHHHHHHHHHHHhCCCcEEEEEec
Q 043290 232 LNPPLYTVGPVLHLKSQPNPDLD-EAQYQKIFQWLDDLAESSVVFLCFGSSG-SFDVAQVKEIAIGLERSGYNFLWSLRV 309 (430)
Q Consensus 232 ~~~~~~~VGpl~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~vVyvsfGS~~-~~~~~~~~~~~~al~~~~~~~vw~~~~ 309 (430)
..|++++|||+............ .+.+.+|.+|||++++++||||||||+. ..+.+++++++.+|+++|++|||+++.
T Consensus 233 ~~~~v~~iGpl~~~~~~~~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~ 312 (448)
T PLN02562 233 QNPQILQIGPLHNQEATTITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLNP 312 (448)
T ss_pred cCCCEEEecCcccccccccCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEcC
Confidence 35779999999754321000000 1334678899999988899999999986 779999999999999999999999975
Q ss_pred CCCCCccccccccCCCCCCChhHHHhhcCceEEEeccchhhhhccCceeEEEeccCchhHHHHHHhCCceeecccccccc
Q 043290 310 SCPKDEASAHRYVTNNGVFPEGFLERIKGRGMICGWVPQVEILAHKAIGGFVSHCGWNSILESLWYGVPIATWPIYAEQQ 389 (430)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~pq~~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~DQ~ 389 (430)
.. .+.+|++|.++.++|++|++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+
T Consensus 313 ~~-------------~~~l~~~~~~~~~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~ 379 (448)
T PLN02562 313 VW-------------REGLPPGYVERVSKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQF 379 (448)
T ss_pred Cc-------------hhhCCHHHHHHhccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccchH
Confidence 31 12478899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhhceeEEeecccccCCcccCHhHHHHHHHHhhC
Q 043290 390 LNAFRMVKEQGLALDLRLDYRVGSDLVMACDIESAVRCLMD 430 (430)
Q Consensus 390 ~~a~rv~~~~G~G~~~~~~~~~~~~~~~~~~l~~ai~~vl~ 430 (430)
.||+++++.+|+|+.+. .+++++|+++|+++|+
T Consensus 380 ~na~~~~~~~g~g~~~~--------~~~~~~l~~~v~~~l~ 412 (448)
T PLN02562 380 VNCAYIVDVWKIGVRIS--------GFGQKEVEEGLRKVME 412 (448)
T ss_pred HHHHHHHHHhCceeEeC--------CCCHHHHHHHHHHHhC
Confidence 99999987679998774 5799999999999983
No 13
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=1.2e-65 Score=494.80 Aligned_cols=412 Identities=23% Similarity=0.355 Sum_probs=305.4
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecCCCCChhhH--Hhhhhc-cC-CCCCeEEEeCCCCCCCCCCC
Q 043290 3 KAELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMKLAVAPWVD--AYAKSL-TD-SQPRICIIDLPPVDPPLPDV 78 (430)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~--~~~~~~-~~-~~~~i~~~~~~~~~~~~~~~ 78 (430)
++||+++|+|++||++||+.||+.|+.||.. |||++|+.++....+ ....+. .. ....++|..++++.|++.+.
T Consensus 7 ~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~--vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pdglp~~~~~ 84 (480)
T PLN02555 7 LVHVMLVSFPGQGHVNPLLRLGKLLASKGLL--VTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFEDGWAEDDPR 84 (480)
T ss_pred CCEEEEECCcccccHHHHHHHHHHHHhCCCe--EEEEeccchhhhhhccccccccccccCCCCeEEEeeCCCCCCCCccc
Confidence 5799999999999999999999999999955 999999864432110 000000 00 11236777777766554432
Q ss_pred CCCCHHHHHHHHHHhhhhhHHHHHHHhhccCCCCceEEEEcCCcchHHHHHHhcCCceEEEecchhHHHHHHhhcccccc
Q 043290 79 LKKSPEYFLSLVVESHLPNVKNIVSSRANSGSLQVTGLVLDFFCVSMVDIAKELSLPSYIFLTSNLGFLGLMLYLPTRQD 158 (430)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 158 (430)
..+...++..+.....+.+++.++++.. ...+++|||+|.++.|+..+|+++|||.++|++++++.++.+++.+....
T Consensus 85 -~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~~~~~ 162 (480)
T PLN02555 85 -RQDLDLYLPQLELVGKREIPNLVKRYAE-QGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYYHGLV 162 (480)
T ss_pred -ccCHHHHHHHHHHhhhHHHHHHHHHHhc-cCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHhhcCC
Confidence 1234445555544566677777665422 12345999999999999999999999999999999998888877632100
Q ss_pred cccccccCCCcccccCCCCCCccCCCCCcccccCC---CchHHHHHHHHhhccCcEEEEcccccccHHHHHHhhcCCCCC
Q 043290 159 RISTVFESSDHELLIPGITSPVPVCVLPSCLFNKD---GGHATLVKLAQRFKDVDGIIVNTFHELEPYAVNAFSGDLNPP 235 (430)
Q Consensus 159 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~~ 235 (430)
. ......+..+..+|+++ +++..+++.++.... ..++.+.+..+...+++++++|||++||+.++..+.. ..|
T Consensus 163 ~-~~~~~~~~~~~~iPglp-~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~-~~~- 238 (480)
T PLN02555 163 P-FPTETEPEIDVQLPCMP-LLKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEIIDYMSK-LCP- 238 (480)
T ss_pred C-cccccCCCceeecCCCC-CcCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHhh-CCC-
Confidence 0 00011112234589986 577788887664321 1234455666677788999999999999999998865 234
Q ss_pred eEEeCccccCCCCC-CC-CCC-hhcHhHHHHHhhcCCCCcEEEEeecCCccCCHHHHHHHHHHHHhCCCcEEEEEecCCC
Q 043290 236 LYTVGPVLHLKSQP-NP-DLD-EAQYQKIFQWLDDLAESSVVFLCFGSSGSFDVAQVKEIAIGLERSGYNFLWSLRVSCP 312 (430)
Q Consensus 236 ~~~VGpl~~~~~~~-~~-~~~-~~~~~~l~~~l~~~~~~~vVyvsfGS~~~~~~~~~~~~~~al~~~~~~~vw~~~~~~~ 312 (430)
++.|||+....... .. ... ...+++|.+|||++++++||||||||+...+.+++.+++.+|+.++++|||+++....
T Consensus 239 v~~iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~flW~~~~~~~ 318 (480)
T PLN02555 239 IKPVGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFLWVMRPPHK 318 (480)
T ss_pred EEEeCcccCccccccccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCeEEEEEecCcc
Confidence 99999997542211 00 000 1235689999999988899999999999999999999999999999999999984310
Q ss_pred CCccccccccCCCCCCChhHHHhhcCceEEEeccchhhhhccCceeEEEeccCchhHHHHHHhCCceeecccccccchhH
Q 043290 313 KDEASAHRYVTNNGVFPEGFLERIKGRGMICGWVPQVEILAHKAIGGFVSHCGWNSILESLWYGVPIATWPIYAEQQLNA 392 (430)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~pq~~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~DQ~~~a 392 (430)
.. ......+|+++.++.++|+++++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||
T Consensus 319 ~~-------~~~~~~lp~~~~~~~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na 391 (480)
T PLN02555 319 DS-------GVEPHVLPEEFLEKAGDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQVTDA 391 (480)
T ss_pred cc-------cchhhcCChhhhhhcCCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCccccHHHH
Confidence 00 00113578899989999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhceeEEeecccccCCcccCHhHHHHHHHHhhC
Q 043290 393 FRMVKEQGLALDLRLDYRVGSDLVMACDIESAVRCLMD 430 (430)
Q Consensus 393 ~rv~~~~G~G~~~~~~~~~~~~~~~~~~l~~ai~~vl~ 430 (430)
+++++.||+|+.+.... .+.+.+++++|+++|+++|+
T Consensus 392 ~~~~~~~gvGv~l~~~~-~~~~~v~~~~v~~~v~~vm~ 428 (480)
T PLN02555 392 VYLVDVFKTGVRLCRGE-AENKLITREEVAECLLEATV 428 (480)
T ss_pred HHHHHHhCceEEccCCc-cccCcCcHHHHHHHHHHHhc
Confidence 99999999999996321 01236899999999999983
No 14
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=2.7e-65 Score=490.06 Aligned_cols=388 Identities=24% Similarity=0.352 Sum_probs=284.9
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecCCCCChhhHHhhhhccCCCCCeEEEeCC----CCCCCCCCC
Q 043290 3 KAELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMKLAVAPWVDAYAKSLTDSQPRICIIDLP----PVDPPLPDV 78 (430)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~ 78 (430)
|+||+++|+|++||++||++||+.|++||++ |||++++.++. .++.......+++|+.++ ++.|++.+.
T Consensus 4 ~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~--VT~vtt~~~~~-----~i~~~~~~~~~i~~~~i~lP~~dGLP~g~e~ 76 (446)
T PLN00414 4 KFHAFMYPWFGFGHMIPYLHLANKLAEKGHR--VTFFLPKKAHK-----QLQPLNLFPDSIVFEPLTLPPVDGLPFGAET 76 (446)
T ss_pred CCEEEEecCcccchHHHHHHHHHHHHhCCCE--EEEEeCCchhh-----hhcccccCCCceEEEEecCCCcCCCCCcccc
Confidence 6699999999999999999999999999977 99999875322 122111122358885554 333444322
Q ss_pred CCCCHHHHHHHHHHhhhhhHHHHHHHhhccCCCCceEEEEcCCcchHHHHHHhcCCceEEEecchhHHHHHHhhcccccc
Q 043290 79 LKKSPEYFLSLVVESHLPNVKNIVSSRANSGSLQVTGLVLDFFCVSMVDIAKELSLPSYIFLTSNLGFLGLMLYLPTRQD 158 (430)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~ 158 (430)
.. +........+......+.+.+++++++ .++||||+|. ++|+..+|+++|||++.|++++++.++.+.++..
T Consensus 77 ~~-~l~~~~~~~~~~a~~~l~~~l~~~L~~--~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~~--- 149 (446)
T PLN00414 77 AS-DLPNSTKKPIFDAMDLLRDQIEAKVRA--LKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAPRA--- 149 (446)
T ss_pred cc-cchhhHHHHHHHHHHHHHHHHHHHHhc--CCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCcHh---
Confidence 11 111111222223333455555555442 3689999995 8999999999999999999999988887766211
Q ss_pred cccccccCCCcccccCCCCC---CccCCC--CCcccccCCCchHHHHHHHHhhccCcEEEEcccccccHHHHHHhhcCCC
Q 043290 159 RISTVFESSDHELLIPGITS---PVPVCV--LPSCLFNKDGGHATLVKLAQRFKDVDGIIVNTFHELEPYAVNAFSGDLN 233 (430)
Q Consensus 159 ~~~~~~~~~~~~~~~p~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~ 233 (430)
. .+ ..+|+++. .++..+ ++..+.. ....+.+..+.+.+++++++|||+|||+.+..++.+...
T Consensus 150 ~----~~-----~~~pg~p~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~ 217 (446)
T PLN00414 150 E----LG-----FPPPDYPLSKVALRGHDANVCSLFAN---SHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIERQCQ 217 (446)
T ss_pred h----cC-----CCCCCCCCCcCcCchhhcccchhhcc---cHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHHhcC
Confidence 0 00 11255542 112111 1122211 123344555666778999999999999999999876334
Q ss_pred CCeEEeCccccCCCCCCCCCChhcHhHHHHHhhcCCCCcEEEEeecCCccCCHHHHHHHHHHHHhCCCcEEEEEecCCCC
Q 043290 234 PPLYTVGPVLHLKSQPNPDLDEAQYQKIFQWLDDLAESSVVFLCFGSSGSFDVAQVKEIAIGLERSGYNFLWSLRVSCPK 313 (430)
Q Consensus 234 ~~~~~VGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vVyvsfGS~~~~~~~~~~~~~~al~~~~~~~vw~~~~~~~~ 313 (430)
+++++|||+....... .. ....++|.+|||+++++|||||||||....+.+++.+++.+|+.+|++|+|+++.....
T Consensus 218 ~~v~~VGPl~~~~~~~-~~--~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~~~~ 294 (446)
T PLN00414 218 RKVLLTGPMLPEPQNK-SG--KPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPPKGS 294 (446)
T ss_pred CCeEEEcccCCCcccc-cC--cccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecCCCc
Confidence 5799999997533210 00 12346799999999999999999999999999999999999999999999999853100
Q ss_pred CccccccccCCCCCCChhHHHhhcCceEEE-eccchhhhhccCceeEEEeccCchhHHHHHHhCCceeecccccccchhH
Q 043290 314 DEASAHRYVTNNGVFPEGFLERIKGRGMIC-GWVPQVEILAHKAIGGFVSHCGWNSILESLWYGVPIATWPIYAEQQLNA 392 (430)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~pq~~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~DQ~~~a 392 (430)
.+....+|++|.++.+++++|+ +|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||
T Consensus 295 --------~~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na 366 (446)
T PLN00414 295 --------STVQEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLIT 366 (446)
T ss_pred --------ccchhhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHH
Confidence 0112358999999999999888 9999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhceeEEeecccccCCcccCHhHHHHHHHHhhC
Q 043290 393 FRMVKEQGLALDLRLDYRVGSDLVMACDIESAVRCLMD 430 (430)
Q Consensus 393 ~rv~~~~G~G~~~~~~~~~~~~~~~~~~l~~ai~~vl~ 430 (430)
+++++.||+|+.++++ +.+.+++++|+++|+++|+
T Consensus 367 ~~~~~~~g~g~~~~~~---~~~~~~~~~i~~~v~~~m~ 401 (446)
T PLN00414 367 RLLTEELEVSVKVQRE---DSGWFSKESLRDTVKSVMD 401 (446)
T ss_pred HHHHHHhCeEEEeccc---cCCccCHHHHHHHHHHHhc
Confidence 9998767999988643 1136899999999999983
No 15
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=2.9e-65 Score=493.90 Aligned_cols=407 Identities=26% Similarity=0.440 Sum_probs=291.9
Q ss_pred CCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecCCCCChhhHHhhhhccCCCCCeEEEeCCC----CCCCCCC
Q 043290 2 KKAELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMKLAVAPWVDAYAKSLTDSQPRICIIDLPP----VDPPLPD 77 (430)
Q Consensus 2 ~~~~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~ 77 (430)
+++||+++|+|++||++||++||+.|+.+|+. |||++|+.++.. +.......++++++.++. +.|++.+
T Consensus 8 ~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~--VTfv~T~~n~~~-----~~~~~~~~~~i~~~~lp~P~~~~lPdG~~ 80 (477)
T PLN02863 8 AGTHVLVFPFPAQGHMIPLLDLTHRLALRGLT--ITVLVTPKNLPF-----LNPLLSKHPSIETLVLPFPSHPSIPSGVE 80 (477)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCCCE--EEEEeCCCcHHH-----HhhhcccCCCeeEEeCCCCCcCCCCCCCc
Confidence 47899999999999999999999999999966 999999866532 111111224588776653 2244443
Q ss_pred CCCCCHHHHHHHHHHhhhhhHHHHHHHhhccCCCCceEEEEcCCcchHHHHHHhcCCceEEEecchhHHHHHHhhccccc
Q 043290 78 VLKKSPEYFLSLVVESHLPNVKNIVSSRANSGSLQVTGLVLDFFCVSMVDIAKELSLPSYIFLTSNLGFLGLMLYLPTRQ 157 (430)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~ 157 (430)
.......+.+..+..... .+.+.+++++++...+++|||+|.+++|+..+|+++|||++.|++++++.++.++++....
T Consensus 81 ~~~~~~~~~~~~~~~a~~-~~~~~~~~~l~~~~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~ 159 (477)
T PLN02863 81 NVKDLPPSGFPLMIHALG-ELYAPLLSWFRSHPSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREM 159 (477)
T ss_pred ChhhcchhhHHHHHHHHH-HhHHHHHHHHHhCCCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhcc
Confidence 322111122222222222 2233333333322246899999999999999999999999999999999998887764211
Q ss_pred ccccccccCCCcc---cccCCCCCCccCCCCCcccccC---CCchHHHHHHHHhhccCcEEEEcccccccHHHHHHhhcC
Q 043290 158 DRISTVFESSDHE---LLIPGITSPVPVCVLPSCLFNK---DGGHATLVKLAQRFKDVDGIIVNTFHELEPYAVNAFSGD 231 (430)
Q Consensus 158 ~~~~~~~~~~~~~---~~~p~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~ 231 (430)
............ ..+|+++ .++..+++..++.. ......+.+..+..+..+++++|||++||+.++.++...
T Consensus 160 -~~~~~~~~~~~~~~~~~iPg~~-~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~ 237 (477)
T PLN02863 160 -PTKINPDDQNEILSFSKIPNCP-KYPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLKKE 237 (477)
T ss_pred -cccccccccccccccCCCCCCC-CcChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHHhh
Confidence 000000011111 2467775 67777887655421 112233344444455678999999999999999999764
Q ss_pred CC-CCeEEeCccccCCCCC----CCCC-ChhcHhHHHHHhhcCCCCcEEEEeecCCccCCHHHHHHHHHHHHhCCCcEEE
Q 043290 232 LN-PPLYTVGPVLHLKSQP----NPDL-DEAQYQKIFQWLDDLAESSVVFLCFGSSGSFDVAQVKEIAIGLERSGYNFLW 305 (430)
Q Consensus 232 ~~-~~~~~VGpl~~~~~~~----~~~~-~~~~~~~l~~~l~~~~~~~vVyvsfGS~~~~~~~~~~~~~~al~~~~~~~vw 305 (430)
.. +++++|||+.+..... ..+. ....+++|.+|||++++++||||||||+...+.+++++++.+|+++|++|||
T Consensus 238 ~~~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~flw 317 (477)
T PLN02863 238 LGHDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFIW 317 (477)
T ss_pred cCCCCeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCcEEE
Confidence 32 6799999997533100 0000 0113568999999998899999999999999999999999999999999999
Q ss_pred EEecCCCCCccccccccCCCCCCChhHHHhhcCceEE-EeccchhhhhccCceeEEEeccCchhHHHHHHhCCceeeccc
Q 043290 306 SLRVSCPKDEASAHRYVTNNGVFPEGFLERIKGRGMI-CGWVPQVEILAHKAIGGFVSHCGWNSILESLWYGVPIATWPI 384 (430)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~pq~~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~P~ 384 (430)
+++..... +.....+|++|.++.+++..+ .+|+||.+||+|+++++|||||||||++||+++|||||++|+
T Consensus 318 ~~~~~~~~--------~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~ 389 (477)
T PLN02863 318 CVKEPVNE--------ESDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPM 389 (477)
T ss_pred EECCCccc--------ccchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCc
Confidence 99853110 001135788998887665555 499999999999999999999999999999999999999999
Q ss_pred ccccchhHHHHhhhhceeEEeecccccCCcccCHhHHHHHHHHhh
Q 043290 385 YAEQQLNAFRMVKEQGLALDLRLDYRVGSDLVMACDIESAVRCLM 429 (430)
Q Consensus 385 ~~DQ~~~a~rv~~~~G~G~~~~~~~~~~~~~~~~~~l~~ai~~vl 429 (430)
+.||+.||+++++.||+|+.+..+ ..+.++.+++.++|+++|
T Consensus 390 ~~DQ~~na~~v~~~~gvG~~~~~~---~~~~~~~~~v~~~v~~~m 431 (477)
T PLN02863 390 AADQFVNASLLVDELKVAVRVCEG---ADTVPDSDELARVFMESV 431 (477)
T ss_pred cccchhhHHHHHHhhceeEEeccC---CCCCcCHHHHHHHHHHHh
Confidence 999999999998878999988642 113578999999999987
No 16
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=2e-65 Score=490.50 Aligned_cols=390 Identities=23% Similarity=0.327 Sum_probs=282.9
Q ss_pred CC-CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecCCCCChhhHHhhhhccCCCCCeEEEeCC----CCCCCC
Q 043290 1 MK-KAELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMKLAVAPWVDAYAKSLTDSQPRICIIDLP----PVDPPL 75 (430)
Q Consensus 1 m~-~~~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~ 75 (430)
|. |+||+++|+|++||++|+++||+.|++|||+ |||++++.+... ++.......++++..++ ++.+++
T Consensus 1 ~~~~~hvv~~P~paqGHi~P~l~LAk~La~~G~~--VT~vtt~~~~~~-----i~~~~a~~~~i~~~~l~~p~~dgLp~g 73 (442)
T PLN02208 1 MEPKFHAFMFPWFAFGHMIPFLHLANKLAEKGHR--VTFLLPKKAQKQ-----LEHHNLFPDSIVFHPLTIPPVNGLPAG 73 (442)
T ss_pred CCCCCEEEEecCccccHHHHHHHHHHHHHhCCCE--EEEEeccchhhh-----hhcccCCCCceEEEEeCCCCccCCCCC
Confidence 55 6699999999999999999999999999988 999998743221 22111112246666543 233444
Q ss_pred CCCCCCCHHHHHHHHHHhhhhhHHHHHHHhhccCCCCceEEEEcCCcchHHHHHHhcCCceEEEecchhHHHHHHhhccc
Q 043290 76 PDVLKKSPEYFLSLVVESHLPNVKNIVSSRANSGSLQVTGLVLDFFCVSMVDIAKELSLPSYIFLTSNLGFLGLMLYLPT 155 (430)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~ 155 (430)
.+.. .+....+..++....+.+.+.+++++++ .++||||+| ++.|+..+|+++|||++.|++++++.+. +.+.+.
T Consensus 74 ~~~~-~~l~~~l~~~~~~~~~~~~~~l~~~L~~--~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~ 148 (442)
T PLN02208 74 AETT-SDIPISMDNLLSEALDLTRDQVEAAVRA--LRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPG 148 (442)
T ss_pred cccc-cchhHHHHHHHHHHHHHHHHHHHHHHhh--CCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCc
Confidence 3321 1121122222222233444444444432 278999999 5889999999999999999999998664 444321
Q ss_pred ccccccccccCCCcccccCCCCCC---ccCCCCCcccccCCCchHHHHHH-HHhhccCcEEEEcccccccHHHHHHhhcC
Q 043290 156 RQDRISTVFESSDHELLIPGITSP---VPVCVLPSCLFNKDGGHATLVKL-AQRFKDVDGIIVNTFHELEPYAVNAFSGD 231 (430)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~p~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~le~~~~~~~~~~ 231 (430)
+. .. ..+|+++.. ++..+++.. ......+..+.+. .+...+++++++|||+|||+.++.++...
T Consensus 149 --~~----~~-----~~~pglp~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~ 216 (442)
T PLN02208 149 --GK----LG-----VPPPGYPSSKVLFRENDAHAL-ATLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQ 216 (442)
T ss_pred --cc----cC-----CCCCCCCCcccccCHHHcCcc-cccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhh
Confidence 00 00 114666531 344455532 1111123333332 24566789999999999999999999765
Q ss_pred CCCCeEEeCccccCCCCCCCCCChhcHhHHHHHhhcCCCCcEEEEeecCCccCCHHHHHHHHHHHHhCCCcEEEEEecCC
Q 043290 232 LNPPLYTVGPVLHLKSQPNPDLDEAQYQKIFQWLDDLAESSVVFLCFGSSGSFDVAQVKEIAIGLERSGYNFLWSLRVSC 311 (430)
Q Consensus 232 ~~~~~~~VGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vVyvsfGS~~~~~~~~~~~~~~al~~~~~~~vw~~~~~~ 311 (430)
..|++++|||+....... ..++++|.+|||++++++||||||||+..++.+++.+++.+|+.++++++|+++...
T Consensus 217 ~~~~v~~vGpl~~~~~~~-----~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~~ 291 (442)
T PLN02208 217 YHKKVLLTGPMFPEPDTS-----KPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPPR 291 (442)
T ss_pred cCCCEEEEeecccCcCCC-----CCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 567899999997543211 235789999999998889999999999999999999999999999999999998531
Q ss_pred CCCccccccccCCCCCCChhHHHhhcCceEEE-eccchhhhhccCceeEEEeccCchhHHHHHHhCCceeecccccccch
Q 043290 312 PKDEASAHRYVTNNGVFPEGFLERIKGRGMIC-GWVPQVEILAHKAIGGFVSHCGWNSILESLWYGVPIATWPIYAEQQL 390 (430)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~pq~~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~DQ~~ 390 (430)
.. ......+|++|.++.+++..++ +|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.
T Consensus 292 ~~--------~~~~~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~ 363 (442)
T PLN02208 292 GS--------STVQEGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVL 363 (442)
T ss_pred cc--------cchhhhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHH
Confidence 10 0012358999999987766666 99999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhceeEEeecccccCCcccCHhHHHHHHHHhhC
Q 043290 391 NAFRMVKEQGLALDLRLDYRVGSDLVMACDIESAVRCLMD 430 (430)
Q Consensus 391 ~a~rv~~~~G~G~~~~~~~~~~~~~~~~~~l~~ai~~vl~ 430 (430)
||+++++.||+|+.++.+ +++.+++++|+++|+++|+
T Consensus 364 na~~~~~~~g~gv~~~~~---~~~~~~~~~l~~ai~~~m~ 400 (442)
T PLN02208 364 FTRLMTEEFEVSVEVSRE---KTGWFSKESLSNAIKSVMD 400 (442)
T ss_pred HHHHHHHHhceeEEeccc---cCCcCcHHHHHHHHHHHhc
Confidence 999988867999998753 1135999999999999984
No 17
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=8.9e-65 Score=489.35 Aligned_cols=414 Identities=25% Similarity=0.438 Sum_probs=291.4
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecCCCCChhhHHhhhhccCCCCCeEEEeCC-----CCCCCCCC
Q 043290 3 KAELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMKLAVAPWVDAYAKSLTDSQPRICIIDLP-----PVDPPLPD 77 (430)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~~~~~~ 77 (430)
+.||+++|+|++||++||+.||+.|++||+. |||++++.++.. ...........+..|+|+.++ ++.|++.+
T Consensus 8 ~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~--vT~v~t~~n~~~-~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~ 84 (491)
T PLN02534 8 QLHFVLIPLMAQGHMIPMIDMARLLAERGVI--VSLVTTPQNASR-FAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCE 84 (491)
T ss_pred CCEEEEECCCCcchHHHHHHHHHHHHhCCCe--EEEEECCCcHHH-HhhhhhhccccCCCeEEEEcCCCCccCCCCCCcc
Confidence 4699999999999999999999999999966 999999865432 112221111111248999888 34455443
Q ss_pred CCCCCH-HHHHHHHHHhhhhhHHHHHHHhhccCCCCceEEEEcCCcchHHHHHHhcCCceEEEecchhHHHHHHhhcccc
Q 043290 78 VLKKSP-EYFLSLVVESHLPNVKNIVSSRANSGSLQVTGLVLDFFCVSMVDIAKELSLPSYIFLTSNLGFLGLMLYLPTR 156 (430)
Q Consensus 78 ~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 156 (430)
...... ..++..+.. ....+++.+++++++...+++|||+|.+++|+..+|+++|||++.|++++++.+..+++....
T Consensus 85 ~~~~~~~~~~~~~~~~-~~~~l~~~l~~lL~~~~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~~ 163 (491)
T PLN02534 85 NLDTLPSRDLLRKFYD-AVDKLQQPLERFLEQAKPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRLH 163 (491)
T ss_pred ccccCCcHHHHHHHHH-HHHHhHHHHHHHHHhcCCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHHh
Confidence 322111 122222222 222344444554443234789999999999999999999999999999999877665432111
Q ss_pred cccccccccCCCcccccCCCCC--CccCCCCCcccccCCCchHHHHHHHHh-hccCcEEEEcccccccHHHHHHhhcCCC
Q 043290 157 QDRISTVFESSDHELLIPGITS--PVPVCVLPSCLFNKDGGHATLVKLAQR-FKDVDGIIVNTFHELEPYAVNAFSGDLN 233 (430)
Q Consensus 157 ~~~~~~~~~~~~~~~~~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~le~~~~~~~~~~~~ 233 (430)
... ........+..+|+++. .++..+++..+.... .+..+.+.... .+.++++++|||++||+.++.++.....
T Consensus 164 ~~~--~~~~~~~~~~~iPg~p~~~~l~~~dlp~~~~~~~-~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~~~~~ 240 (491)
T PLN02534 164 NAH--LSVSSDSEPFVVPGMPQSIEITRAQLPGAFVSLP-DLDDVRNKMREAESTAFGVVVNSFNELEHGCAEAYEKAIK 240 (491)
T ss_pred ccc--ccCCCCCceeecCCCCccccccHHHCChhhcCcc-cHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHHHhhcC
Confidence 110 01111223455788763 245556665443222 23334433333 3456799999999999999999976444
Q ss_pred CCeEEeCccccCCCCCC-----CCCChhcHhHHHHHhhcCCCCcEEEEeecCCccCCHHHHHHHHHHHHhCCCcEEEEEe
Q 043290 234 PPLYTVGPVLHLKSQPN-----PDLDEAQYQKIFQWLDDLAESSVVFLCFGSSGSFDVAQVKEIAIGLERSGYNFLWSLR 308 (430)
Q Consensus 234 ~~~~~VGpl~~~~~~~~-----~~~~~~~~~~l~~~l~~~~~~~vVyvsfGS~~~~~~~~~~~~~~al~~~~~~~vw~~~ 308 (430)
++++.|||+........ ........++|.+|||++++++||||||||+....++++.+++.+|+.++++|||+++
T Consensus 241 ~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW~~r 320 (491)
T PLN02534 241 KKVWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIWVIK 320 (491)
T ss_pred CcEEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEe
Confidence 67999999974321100 0000112457999999998899999999999999999999999999999999999998
Q ss_pred cCCCCCccccccccCCCCCCChhHHHhhcCceEE-EeccchhhhhccCceeEEEeccCchhHHHHHHhCCceeecccccc
Q 043290 309 VSCPKDEASAHRYVTNNGVFPEGFLERIKGRGMI-CGWVPQVEILAHKAIGGFVSHCGWNSILESLWYGVPIATWPIYAE 387 (430)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~pq~~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~D 387 (430)
...... +.....+|++|.++.+++.++ .+|+||.+||+|+++++|||||||||++||+++|||||++|+++|
T Consensus 321 ~~~~~~-------~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~~~d 393 (491)
T PLN02534 321 TGEKHS-------ELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFAE 393 (491)
T ss_pred cCcccc-------chhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEecccccc
Confidence 431100 001123688998886555454 599999999999999999999999999999999999999999999
Q ss_pred cchhHHHHhhhhceeEEeecc----cccCC--c-ccCHhHHHHHHHHhhC
Q 043290 388 QQLNAFRMVKEQGLALDLRLD----YRVGS--D-LVMACDIESAVRCLMD 430 (430)
Q Consensus 388 Q~~~a~rv~~~~G~G~~~~~~----~~~~~--~-~~~~~~l~~ai~~vl~ 430 (430)
|+.||+++++.||+|+++..+ +.++. + .+++++|+++|+++|+
T Consensus 394 q~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~ 443 (491)
T PLN02534 394 QFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMD 443 (491)
T ss_pred HHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhc
Confidence 999999999999999988532 11111 1 4899999999999983
No 18
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=9.9e-65 Score=482.80 Aligned_cols=386 Identities=24% Similarity=0.366 Sum_probs=284.2
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecCCCCChhhHHhhhhcc--CCCCCeEEEeCC--CCCCCCCCC
Q 043290 3 KAELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMKLAVAPWVDAYAKSLT--DSQPRICIIDLP--PVDPPLPDV 78 (430)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~--~~~~~~~~~ 78 (430)
|+||+++|+|++||++||+.||+.|+++|+. |||++++.+... ..... .....+.+++++ ++.|++.+.
T Consensus 5 ~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~--vT~~tt~~~~~~-----~~~~~~~~~~~~v~~~~~p~~~glp~g~e~ 77 (453)
T PLN02764 5 KFHVLMYPWFATGHMTPFLFLANKLAEKGHT--VTFLLPKKALKQ-----LEHLNLFPHNIVFRSVTVPHVDGLPVGTET 77 (453)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCE--EEEEeCcchhhh-----hcccccCCCCceEEEEECCCcCCCCCcccc
Confidence 6799999999999999999999999999965 999999865331 11111 111237788887 444544332
Q ss_pred CCCCHHH---HHHHHHHhhhhhHHHHHHHhhccCCCCceEEEEcCCcchHHHHHHhcCCceEEEecchhHHHHHHhhccc
Q 043290 79 LKKSPEY---FLSLVVESHLPNVKNIVSSRANSGSLQVTGLVLDFFCVSMVDIAKELSLPSYIFLTSNLGFLGLMLYLPT 155 (430)
Q Consensus 79 ~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~ 155 (430)
....... .+........+.+++.+++. +++|||+|+ +.|+..+|+++|||++.|++++++.++.+.+ +.
T Consensus 78 ~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~------~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~~ 149 (453)
T PLN02764 78 VSEIPVTSADLLMSAMDLTRDQVEVVVRAV------EPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV-PG 149 (453)
T ss_pred cccCChhHHHHHHHHHHHhHHHHHHHHHhC------CCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-cc
Confidence 2111111 22222223334444444332 679999995 8899999999999999999999988877753 11
Q ss_pred ccccccccccCCCcccccCCCCC---CccCCCCCcccc--cCC---CchHHHHHHHHhhccCcEEEEcccccccHHHHHH
Q 043290 156 RQDRISTVFESSDHELLIPGITS---PVPVCVLPSCLF--NKD---GGHATLVKLAQRFKDVDGIIVNTFHELEPYAVNA 227 (430)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~p~~~~---~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~ 227 (430)
.. ++ ...|+++. .++..+++.... ... .+.....+..+.+++.+++++|||+|||+.++.+
T Consensus 150 ---~~---~~-----~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~ 218 (453)
T PLN02764 150 ---GE---LG-----VPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDY 218 (453)
T ss_pred ---cc---CC-----CCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHH
Confidence 00 00 11366642 134444444211 111 1123333333566778899999999999999999
Q ss_pred hhcCCCCCeEEeCccccCCCCCCCCCChhcHhHHHHHhhcCCCCcEEEEeecCCccCCHHHHHHHHHHHHhCCCcEEEEE
Q 043290 228 FSGDLNPPLYTVGPVLHLKSQPNPDLDEAQYQKIFQWLDDLAESSVVFLCFGSSGSFDVAQVKEIAIGLERSGYNFLWSL 307 (430)
Q Consensus 228 ~~~~~~~~~~~VGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vVyvsfGS~~~~~~~~~~~~~~al~~~~~~~vw~~ 307 (430)
+.....+++++|||+....... ....++|.+|||++++++||||||||+..++.+++.+++.+|+.++++|+|++
T Consensus 219 ~~~~~~~~v~~VGPL~~~~~~~-----~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~ 293 (453)
T PLN02764 219 IEKHCRKKVLLTGPVFPEPDKT-----RELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAV 293 (453)
T ss_pred HHhhcCCcEEEeccCccCcccc-----ccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEE
Confidence 9753236799999997543111 12356899999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCccccccccCCCCCCChhHHHhhcCceEEE-eccchhhhhccCceeEEEeccCchhHHHHHHhCCceeeccccc
Q 043290 308 RVSCPKDEASAHRYVTNNGVFPEGFLERIKGRGMIC-GWVPQVEILAHKAIGGFVSHCGWNSILESLWYGVPIATWPIYA 386 (430)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~pq~~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~ 386 (430)
+..... +.....+|++|.++.+++++++ +|+||.+||+|+++++|||||||||++||+++|||||++|++.
T Consensus 294 r~~~~~--------~~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~ 365 (453)
T PLN02764 294 KPPRGS--------STIQEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLG 365 (453)
T ss_pred eCCCCC--------cchhhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCccc
Confidence 853100 0112458999999998888777 9999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHhhhhceeEEeecccccCCcccCHhHHHHHHHHhhC
Q 043290 387 EQQLNAFRMVKEQGLALDLRLDYRVGSDLVMACDIESAVRCLMD 430 (430)
Q Consensus 387 DQ~~~a~rv~~~~G~G~~~~~~~~~~~~~~~~~~l~~ai~~vl~ 430 (430)
||+.||+++++.||+|+.+..+ +.+.+++++|++||+++|+
T Consensus 366 DQ~~na~~l~~~~g~gv~~~~~---~~~~~~~e~i~~av~~vm~ 406 (453)
T PLN02764 366 DQVLNTRLLSDELKVSVEVARE---ETGWFSKESLRDAINSVMK 406 (453)
T ss_pred chHHHHHHHHHHhceEEEeccc---cCCccCHHHHHHHHHHHhc
Confidence 9999999998767999987542 1126899999999999984
No 19
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=3.7e-64 Score=484.89 Aligned_cols=393 Identities=24% Similarity=0.405 Sum_probs=290.2
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHH--HHhCCCCeEEEEEecCCCCChhhHHhhhhccCCCCCeEEEeCCCCCCCCCCCCC
Q 043290 3 KAELIFVPSPGIGHLVSTLEFAKH--LTDRDDRISVTLLSMKLAVAPWVDAYAKSLTDSQPRICIIDLPPVDPPLPDVLK 80 (430)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~l~La~~--L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 80 (430)
+.||+++|+|++||++||+.||++ |++||++ |||++++.+... ++........+++..++++.|++.+
T Consensus 8 ~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~--VT~v~t~~~~~~-----~~~~~~~~~~~~~~~~~~glp~~~~--- 77 (456)
T PLN02210 8 ETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLH--FTLATTEQARDL-----LSTVEKPRRPVDLVFFSDGLPKDDP--- 77 (456)
T ss_pred CCEEEEeCCcccccHHHHHHHHHHHHhhcCCcE--EEEEeccchhhh-----hccccCCCCceEEEECCCCCCCCcc---
Confidence 569999999999999999999999 5699977 999999854321 2221112345788777766555432
Q ss_pred CCHHHHHHHHHHhhhhhHHHHHHHhhccCCCCceEEEEcCCcchHHHHHHhcCCceEEEecchhHHHHHHhhcccccccc
Q 043290 81 KSPEYFLSLVVESHLPNVKNIVSSRANSGSLQVTGLVLDFFCVSMVDIAKELSLPSYIFLTSNLGFLGLMLYLPTRQDRI 160 (430)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 160 (430)
.+...++..+.+.+.+.+++.+++ .++||||+|.++.|+..+|+++|||++.|++.+++.+..+.+.......
T Consensus 78 ~~~~~~~~~~~~~~~~~l~~~l~~------~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~~~- 150 (456)
T PLN02210 78 RAPETLLKSLNKVGAKNLSKIIEE------KRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKTNS- 150 (456)
T ss_pred cCHHHHHHHHHHhhhHHHHHHHhc------CCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhccCC-
Confidence 233444444444444444444433 2699999999999999999999999999999999888777654321111
Q ss_pred cccccCCCcccccCCCCCCccCCCCCcccccCCC-chHHHH-HHHHhhccCcEEEEcccccccHHHHHHhhcCCCCCeEE
Q 043290 161 STVFESSDHELLIPGITSPVPVCVLPSCLFNKDG-GHATLV-KLAQRFKDVDGIIVNTFHELEPYAVNAFSGDLNPPLYT 238 (430)
Q Consensus 161 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~~~~~ 238 (430)
............+|+++ +++..+++..+..... .+.... +..+.....+++++|||++||+.++..+.. .+++++
T Consensus 151 ~~~~~~~~~~~~~Pgl~-~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~--~~~v~~ 227 (456)
T PLN02210 151 FPDLEDLNQTVELPALP-LLEVRDLPSFMLPSGGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMAD--LKPVIP 227 (456)
T ss_pred CCcccccCCeeeCCCCC-CCChhhCChhhhcCCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhh--cCCEEE
Confidence 11111111224578875 5677777765543321 122222 333445667899999999999999998875 367999
Q ss_pred eCccccCC---CCCC---CC--C-ChhcHhHHHHHhhcCCCCcEEEEeecCCccCCHHHHHHHHHHHHhCCCcEEEEEec
Q 043290 239 VGPVLHLK---SQPN---PD--L-DEAQYQKIFQWLDDLAESSVVFLCFGSSGSFDVAQVKEIAIGLERSGYNFLWSLRV 309 (430)
Q Consensus 239 VGpl~~~~---~~~~---~~--~-~~~~~~~l~~~l~~~~~~~vVyvsfGS~~~~~~~~~~~~~~al~~~~~~~vw~~~~ 309 (430)
|||+++.. .... .. . -+..+++|.+|||++++++||||||||+...+.+++++++.+|+.+|++|||+++.
T Consensus 228 VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~~~ 307 (456)
T PLN02210 228 IGPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIRP 307 (456)
T ss_pred EcccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 99997421 1000 00 0 01235679999999988899999999999999999999999999999999999985
Q ss_pred CCCCCccccccccCCCCCCChhHHHhh-cCceEEEeccchhhhhccCceeEEEeccCchhHHHHHHhCCceeeccccccc
Q 043290 310 SCPKDEASAHRYVTNNGVFPEGFLERI-KGRGMICGWVPQVEILAHKAIGGFVSHCGWNSILESLWYGVPIATWPIYAEQ 388 (430)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~pq~~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~DQ 388 (430)
... ...+.+|.++. ++|++|++|+||.+||+|+++++|||||||||++||+++|||||++|+++||
T Consensus 308 ~~~-------------~~~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ 374 (456)
T PLN02210 308 KEK-------------AQNVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQ 374 (456)
T ss_pred Ccc-------------ccchhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEeccccccc
Confidence 310 11234565665 4788899999999999999999999999999999999999999999999999
Q ss_pred chhHHHHhhhhceeEEeecccccCCcccCHhHHHHHHHHhhC
Q 043290 389 QLNAFRMVKEQGLALDLRLDYRVGSDLVMACDIESAVRCLMD 430 (430)
Q Consensus 389 ~~~a~rv~~~~G~G~~~~~~~~~~~~~~~~~~l~~ai~~vl~ 430 (430)
+.||+++++.||+|+.+..+. .++.+++++|+++|+++|+
T Consensus 375 ~~na~~~~~~~g~G~~l~~~~--~~~~~~~~~l~~av~~~m~ 414 (456)
T PLN02210 375 PIDARLLVDVFGIGVRMRNDA--VDGELKVEEVERCIEAVTE 414 (456)
T ss_pred HHHHHHHHHHhCeEEEEeccc--cCCcCCHHHHHHHHHHHhc
Confidence 999999998679999987431 1237899999999999983
No 20
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2.6e-63 Score=482.34 Aligned_cols=395 Identities=25% Similarity=0.421 Sum_probs=296.0
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhC--CCCeEEEEEecCCCCChhhHHhhhhccCCCCCeEEEeCCCCCCCCCCCCC
Q 043290 3 KAELIFVPSPGIGHLVSTLEFAKHLTDR--DDRISVTLLSMKLAVAPWVDAYAKSLTDSQPRICIIDLPPVDPPLPDVLK 80 (430)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~l~La~~L~~r--GH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 80 (430)
+.||+++|+|++||++||++||++|++| ||+ ||+++++.++. .+++.. ...+++|+.+++..+++.+. .
T Consensus 10 ~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~--VT~~~t~~~~~-----~i~~~~-~~~gi~fv~lp~~~p~~~~~-~ 80 (459)
T PLN02448 10 SCHVVAMPYPGRGHINPMMNLCKLLASRKPDIL--ITFVVTEEWLG-----LIGSDP-KPDNIRFATIPNVIPSELVR-A 80 (459)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHcCCCCcE--EEEEeCCchHh-----HhhccC-CCCCEEEEECCCCCCCcccc-c
Confidence 6799999999999999999999999999 988 99999985432 122211 12469999999765443321 1
Q ss_pred CCHHHHHHHHHHhhhhhHHHHHHHhhccCCCCceEEEEcCCcchHHHHHHhcCCceEEEecchhHHHHHHhhcccccccc
Q 043290 81 KSPEYFLSLVVESHLPNVKNIVSSRANSGSLQVTGLVLDFFCVSMVDIAKELSLPSYIFLTSNLGFLGLMLYLPTRQDRI 160 (430)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 160 (430)
.+...++..+.+.+.+.++++++++. .++||||+|.++.|+..+|+++|||++.++++++..++.+.+++.+....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~ 156 (459)
T PLN02448 81 ADFPGFLEAVMTKMEAPFEQLLDRLE----PPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNG 156 (459)
T ss_pred cCHHHHHHHHHHHhHHHHHHHHHhcC----CCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhcc
Confidence 23444444444455556666665542 47899999999999999999999999999999998888777764332211
Q ss_pred cccccC----CCcccccCCCCCCccCCCCCcccccCC-CchHHHHHHHHhhccCcEEEEcccccccHHHHHHhhcCCCCC
Q 043290 161 STVFES----SDHELLIPGITSPVPVCVLPSCLFNKD-GGHATLVKLAQRFKDVDGIIVNTFHELEPYAVNAFSGDLNPP 235 (430)
Q Consensus 161 ~~~~~~----~~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~~ 235 (430)
..+... ......+|+++ +++..+++..+.... ..++.+.+......+.+++++|||++||+.++.++.....++
T Consensus 157 ~~~~~~~~~~~~~~~~iPg~~-~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~ 235 (459)
T PLN02448 157 HFPVELSESGEERVDYIPGLS-STRLSDLPPIFHGNSRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKSKFPFP 235 (459)
T ss_pred CCCCccccccCCccccCCCCC-CCChHHCchhhcCCchHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHhhcCCc
Confidence 111111 01112467775 566667776554322 124555666666677789999999999999999987644457
Q ss_pred eEEeCccccCCCC--CCCCC-ChhcHhHHHHHhhcCCCCcEEEEeecCCccCCHHHHHHHHHHHHhCCCcEEEEEecCCC
Q 043290 236 LYTVGPVLHLKSQ--PNPDL-DEAQYQKIFQWLDDLAESSVVFLCFGSSGSFDVAQVKEIAIGLERSGYNFLWSLRVSCP 312 (430)
Q Consensus 236 ~~~VGpl~~~~~~--~~~~~-~~~~~~~l~~~l~~~~~~~vVyvsfGS~~~~~~~~~~~~~~al~~~~~~~vw~~~~~~~ 312 (430)
+++|||+.+.... ..... ....+.+|.+||+.++++++|||||||+...+.+++++++++|+.++++|||+.+..
T Consensus 236 ~~~iGP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~-- 313 (459)
T PLN02448 236 VYPIGPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARGE-- 313 (459)
T ss_pred eEEecCcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcCc--
Confidence 9999999653211 00000 011235899999998888999999999998899999999999999999999987642
Q ss_pred CCccccccccCCCCCCChhHHHhhcCceEEEeccchhhhhccCceeEEEeccCchhHHHHHHhCCceeecccccccchhH
Q 043290 313 KDEASAHRYVTNNGVFPEGFLERIKGRGMICGWVPQVEILAHKAIGGFVSHCGWNSILESLWYGVPIATWPIYAEQQLNA 392 (430)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~pq~~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~DQ~~~a 392 (430)
..++.++.++|+++++|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||
T Consensus 314 ----------------~~~~~~~~~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~na 377 (459)
T PLN02448 314 ----------------ASRLKEICGDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNS 377 (459)
T ss_pred ----------------hhhHhHhccCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhhH
Confidence 1234445567899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhceeEEeecccccCCcccCHhHHHHHHHHhhC
Q 043290 393 FRMVKEQGLALDLRLDYRVGSDLVMACDIESAVRCLMD 430 (430)
Q Consensus 393 ~rv~~~~G~G~~~~~~~~~~~~~~~~~~l~~ai~~vl~ 430 (430)
+|+++.||+|+.+..+.. +.+.+++++|+++|+++|+
T Consensus 378 ~~v~~~~g~G~~~~~~~~-~~~~~~~~~l~~av~~vl~ 414 (459)
T PLN02448 378 KLIVEDWKIGWRVKREVG-EETLVGREEIAELVKRFMD 414 (459)
T ss_pred HHHHHHhCceEEEecccc-cCCcCcHHHHHHHHHHHhc
Confidence 999998899998864311 1236899999999999983
No 21
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=5.7e-62 Score=475.25 Aligned_cols=411 Identities=27% Similarity=0.416 Sum_probs=286.2
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecCCCCChhhHHhhhhccC----CCCCeEEEeCC---CCCCCC
Q 043290 3 KAELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMKLAVAPWVDAYAKSLTD----SQPRICIIDLP---PVDPPL 75 (430)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~---~~~~~~ 75 (430)
++||+++|+|++||++|++.||++|++|||+ |||++++.+... ++........ ....+.+++++ ++.|++
T Consensus 5 ~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~--VT~vtt~~~~~~-i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g 81 (482)
T PLN03007 5 KLHILFFPFMAHGHMIPTLDMAKLFSSRGAK--STILTTPLNAKI-FEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEG 81 (482)
T ss_pred CcEEEEECCCccccHHHHHHHHHHHHhCCCE--EEEEECCCchhh-hhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCC
Confidence 5699999999999999999999999999988 999999865422 1111111100 11135556665 334544
Q ss_pred CCCCCC-------CHHHHHHHHHHhhhhhHHHHHHHhhccCCCCceEEEEcCCcchHHHHHHhcCCceEEEecchhHHHH
Q 043290 76 PDVLKK-------SPEYFLSLVVESHLPNVKNIVSSRANSGSLQVTGLVLDFFCVSMVDIAKELSLPSYIFLTSNLGFLG 148 (430)
Q Consensus 76 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~ 148 (430)
.+.... ....++..+. ...+.+.+.+++++++ .++||||+|.+++|+..+|+++|||++.|++++++...
T Consensus 82 ~e~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~l~~--~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~ 158 (482)
T PLN03007 82 CENVDFITSNNNDDSGDLFLKFL-FSTKYFKDQLEKLLET--TRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLC 158 (482)
T ss_pred cccccccccccccchHHHHHHHH-HHHHHHHHHHHHHHhc--CCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHH
Confidence 332210 1222333333 3344555666666552 37899999999999999999999999999999887766
Q ss_pred HHhhcccccccccccccCCCcccccCCCCC--CccCCCCCcccccCCCchHHHHHHHHhhccCcEEEEcccccccHHHHH
Q 043290 149 LMLYLPTRQDRISTVFESSDHELLIPGITS--PVPVCVLPSCLFNKDGGHATLVKLAQRFKDVDGIIVNTFHELEPYAVN 226 (430)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~ 226 (430)
.+++....... ...........+|+++. .++..+++.. .........+.+....+.+.+++++||+.+||+.+..
T Consensus 159 ~~~~~~~~~~~--~~~~~~~~~~~~pg~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~~~~~ 235 (482)
T PLN03007 159 ASYCIRVHKPQ--KKVASSSEPFVIPDLPGDIVITEEQINDA-DEESPMGKFMKEVRESEVKSFGVLVNSFYELESAYAD 235 (482)
T ss_pred HHHHHHhcccc--cccCCCCceeeCCCCCCccccCHHhcCCC-CCchhHHHHHHHHHhhcccCCEEEEECHHHHHHHHHH
Confidence 65533211100 00111111233677752 1233333321 1111022334444456778889999999999999888
Q ss_pred HhhcCCCCCeEEeCccccCCCCCC-----CCCChhcHhHHHHHhhcCCCCcEEEEeecCCccCCHHHHHHHHHHHHhCCC
Q 043290 227 AFSGDLNPPLYTVGPVLHLKSQPN-----PDLDEAQYQKIFQWLDDLAESSVVFLCFGSSGSFDVAQVKEIAIGLERSGY 301 (430)
Q Consensus 227 ~~~~~~~~~~~~VGpl~~~~~~~~-----~~~~~~~~~~l~~~l~~~~~~~vVyvsfGS~~~~~~~~~~~~~~al~~~~~ 301 (430)
.+.+...+++++|||+........ .......+++|.+|||++++++||||||||+...+.+++.+++.+|+.+|+
T Consensus 236 ~~~~~~~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~l~~~~~ 315 (482)
T PLN03007 236 FYKSFVAKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAGLEGSGQ 315 (482)
T ss_pred HHHhccCCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHHHHHCCC
Confidence 887644457999999754321100 000011357899999999889999999999999999999999999999999
Q ss_pred cEEEEEecCCCCCccccccccCCCCCCChhHHHhhcC-ceEEEeccchhhhhccCceeEEEeccCchhHHHHHHhCCcee
Q 043290 302 NFLWSLRVSCPKDEASAHRYVTNNGVFPEGFLERIKG-RGMICGWVPQVEILAHKAIGGFVSHCGWNSILESLWYGVPIA 380 (430)
Q Consensus 302 ~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~pq~~iL~~~~~~~~itHgG~~s~~eal~~GvP~v 380 (430)
+|||+++..... ......+|++|.++..+ |+++.+|+||.+||+|+++++|||||||||++||+++|||||
T Consensus 316 ~flw~~~~~~~~--------~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v 387 (482)
T PLN03007 316 NFIWVVRKNENQ--------GEKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMV 387 (482)
T ss_pred CEEEEEecCCcc--------cchhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCee
Confidence 999999864210 00123478899888755 445559999999999999999999999999999999999999
Q ss_pred ecccccccchhHHHHhhhhceeEEeecccc--cCCcccCHhHHHHHHHHhhC
Q 043290 381 TWPIYAEQQLNAFRMVKEQGLALDLRLDYR--VGSDLVMACDIESAVRCLMD 430 (430)
Q Consensus 381 ~~P~~~DQ~~~a~rv~~~~G~G~~~~~~~~--~~~~~~~~~~l~~ai~~vl~ 430 (430)
++|+++||+.||+++++.|++|+.+..... .+.+.+++++|+++|+++|+
T Consensus 388 ~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~ 439 (482)
T PLN03007 388 TWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIV 439 (482)
T ss_pred eccchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhc
Confidence 999999999999999876777777642210 01236899999999999984
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=4.2e-47 Score=371.22 Aligned_cols=364 Identities=19% Similarity=0.195 Sum_probs=243.3
Q ss_pred cEEEEE-cCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecCCCCChhhHHhhhhccCCCCCeEEEeCCCCCCC------CC
Q 043290 4 AELIFV-PSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMKLAVAPWVDAYAKSLTDSQPRICIIDLPPVDPP------LP 76 (430)
Q Consensus 4 ~~i~~~-~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~------~~ 76 (430)
.||+.+ |.++.+|..-+..|+++|++|||+ ||++++.... .... ....+++.+.++..... ..
T Consensus 21 ~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~--VTvi~p~~~~------~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~ 90 (507)
T PHA03392 21 ARILAVFPTPAYSHHSVFKVYVEALAERGHN--VTVIKPTLRV------YYAS--HLCGNITEIDASLSVEYFKKLVKSS 90 (507)
T ss_pred ccEEEEcCCCCCcHHHHHHHHHHHHHHcCCe--EEEEeccccc------cccc--CCCCCEEEEEcCCChHHHHHHHhhh
Confidence 357755 889999999999999999999999 9999864210 0000 01345666665421100 00
Q ss_pred CC-----CCCCHHH----HHHHHHHhhhhhHH-HHHHHhhccCCCCceEEEEcCCcchHHHHHHhc-CCceEEEecchhH
Q 043290 77 DV-----LKKSPEY----FLSLVVESHLPNVK-NIVSSRANSGSLQVTGLVLDFFCVSMVDIAKEL-SLPSYIFLTSNLG 145 (430)
Q Consensus 77 ~~-----~~~~~~~----~~~~~~~~~~~~~~-~~l~~~~~~~~~~~D~vV~D~~~~~~~~~A~~l-giP~v~~~~~~~~ 145 (430)
.. ...+... ....+...|...+. ..+.++++..+.++|++|+|.+..|+..+|+++ ++|.|.+++....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~ 170 (507)
T PHA03392 91 AVFRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGL 170 (507)
T ss_pred hHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCc
Confidence 00 0000001 11112233333332 223444432345899999999888988899999 9997766654432
Q ss_pred HHHHHhhccccccccccccc-CCCcccccCCCCCCccCCCCCcccccCCCc---------hHHHHHHHH-----------
Q 043290 146 FLGLMLYLPTRQDRISTVFE-SSDHELLIPGITSPVPVCVLPSCLFNKDGG---------HATLVKLAQ----------- 204 (430)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~----------- 204 (430)
.. ... ..+ .|.++.|+|.+...+. +-..+..+..++ +..+....+
T Consensus 171 ~~--~~~----------~~gg~p~~~syvP~~~~~~~--~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~ 236 (507)
T PHA03392 171 AE--NFE----------TMGAVSRHPVYYPNLWRSKF--GNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDT 236 (507)
T ss_pred hh--HHH----------hhccCCCCCeeeCCcccCCC--CCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCC
Confidence 11 100 023 5667788887653322 111111110000 000000000
Q ss_pred -----hhccCcEEEEcccccccHHHHHHhhcCCCCCeEEeCccccCCCCCCCCCChhcHhHHHHHhhcCCCCcEEEEeec
Q 043290 205 -----RFKDVDGIIVNTFHELEPYAVNAFSGDLNPPLYTVGPVLHLKSQPNPDLDEAQYQKIFQWLDDLAESSVVFLCFG 279 (430)
Q Consensus 205 -----~~~~~~~~~~~s~~~le~~~~~~~~~~~~~~~~~VGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vVyvsfG 279 (430)
..++...+++|+...++.+ ....|++++|||+....... .++++++.+|++++ ++++||||||
T Consensus 237 ~~~~~l~~~~~l~lvns~~~~d~~------rp~~p~v~~vGgi~~~~~~~-----~~l~~~l~~fl~~~-~~g~V~vS~G 304 (507)
T PHA03392 237 PTIRELRNRVQLLFVNVHPVFDNN------RPVPPSVQYLGGLHLHKKPP-----QPLDDYLEEFLNNS-TNGVVYVSFG 304 (507)
T ss_pred CCHHHHHhCCcEEEEecCccccCC------CCCCCCeeeecccccCCCCC-----CCCCHHHHHHHhcC-CCcEEEEECC
Confidence 0112234556666655543 23567799999987643222 45788999999986 4579999999
Q ss_pred CCc---cCCHHHHHHHHHHHHhCCCcEEEEEecCCCCCccccccccCCCCCCChhHHHhhcCceEEEeccchhhhhccCc
Q 043290 280 SSG---SFDVAQVKEIAIGLERSGYNFLWSLRVSCPKDEASAHRYVTNNGVFPEGFLERIKGRGMICGWVPQVEILAHKA 356 (430)
Q Consensus 280 S~~---~~~~~~~~~~~~al~~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~pq~~iL~~~~ 356 (430)
|+. ..+.++++.++++|++++++|||+.++... + ...++|+++++|+||.+||+|++
T Consensus 305 S~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~~----------------~----~~~p~Nv~i~~w~Pq~~lL~hp~ 364 (507)
T PHA03392 305 SSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEVE----------------A----INLPANVLTQKWFPQRAVLKHKN 364 (507)
T ss_pred CCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCcC----------------c----ccCCCceEEecCCCHHHHhcCCC
Confidence 986 357889999999999999999999875411 1 01345999999999999999999
Q ss_pred eeEEEeccCchhHHHHHHhCCceeecccccccchhHHHHhhhhceeEEeecccccCCcccCHhHHHHHHHHhhC
Q 043290 357 IGGFVSHCGWNSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDLRLDYRVGSDLVMACDIESAVRCLMD 430 (430)
Q Consensus 357 ~~~~itHgG~~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~~~~~~~~~~~~~~l~~ai~~vl~ 430 (430)
+++||||||+||++||+++|||||++|+++||+.||+|+++. |+|+.+++. .+++++|++||+++|+
T Consensus 365 v~~fItHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~-G~G~~l~~~------~~t~~~l~~ai~~vl~ 431 (507)
T PHA03392 365 VKAFVTQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVEL-GIGRALDTV------TVSAAQLVLAIVDVIE 431 (507)
T ss_pred CCEEEecCCcccHHHHHHcCCCEEECCCCccHHHHHHHHHHc-CcEEEeccC------CcCHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999997 999999876 7899999999999974
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=1.8e-47 Score=380.43 Aligned_cols=367 Identities=21% Similarity=0.272 Sum_probs=205.1
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecCCCCChhhHHhhhhccCCCCCeEEEeCCCCCCCCC-CCCCCCH
Q 043290 5 ELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMKLAVAPWVDAYAKSLTDSQPRICIIDLPPVDPPLP-DVLKKSP 83 (430)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~ 83 (430)
||+++|+ ++||++++..|+++|++|||+ ||++++... .... .....++++..++...+... +......
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~--VTvl~~~~~------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHN--VTVLTPSPS------SSLN--PSKPSNIRFETYPDPYPEEEFEEIFPEF 70 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TT--SEEEHHHHH------HT--------S-CCEEEE-----TT------TTH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCc--eEEEEeecc------cccc--cccccceeeEEEcCCcchHHHhhhhHHH
Confidence 5888885 889999999999999999999 889986410 0011 11233456655554432211 1111111
Q ss_pred -HHHHH---------HHHH---hhhhhHHHHHHHhhcc-------CCCCceEEEEcCCcchHHHHHHhcCCceEEEecch
Q 043290 84 -EYFLS---------LVVE---SHLPNVKNIVSSRANS-------GSLQVTGLVLDFFCVSMVDIAKELSLPSYIFLTSN 143 (430)
Q Consensus 84 -~~~~~---------~~~~---~~~~~~~~~l~~~~~~-------~~~~~D~vV~D~~~~~~~~~A~~lgiP~v~~~~~~ 143 (430)
...+. .... .........++++++. ...++|++|+|.+..|+..+|+.+|+|.+.+.++.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~ 150 (500)
T PF00201_consen 71 ISKFFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKSEKFDLVISDAFDPCGLALAHYLGIPVIIISSST 150 (500)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHHHHHCT-EEEEEESSHHHHHHHHHHTHHHHHHCC
T ss_pred HHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccccceEeeccchhHHHHHHhcCCeEEEeccc
Confidence 11111 0110 1111111112112111 11379999999998899999999999976543222
Q ss_pred hHHHHHHhhcccccccccccccCCCcccccCCCCCCccCCCCCcccc-cCCCchHHHHHHH-Hhhcc---CcEEEEc---
Q 043290 144 LGFLGLMLYLPTRQDRISTVFESSDHELLIPGITSPVPVCVLPSCLF-NKDGGHATLVKLA-QRFKD---VDGIIVN--- 215 (430)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~---~~~~~~~--- 215 (430)
.. ... .....+.+.++.+.|.+...+ .+-..+.. -.+.......+.. ..... .......
T Consensus 151 ~~--------~~~---~~~~~g~p~~psyvP~~~s~~--~~~msf~~Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (500)
T PF00201_consen 151 PM--------YDL---SSFSGGVPSPPSYVPSMFSDF--SDRMSFWQRIKNFLFYLYFRFIFRYFFSPQDKLYKKYFGFP 217 (500)
T ss_dssp SC--------SCC---TCCTSCCCTSTTSTTCBCCCS--GTTSSSST--TTSHHHHHHHHHHHHGGGS-TTS-EEESS-G
T ss_pred cc--------chh---hhhccCCCCChHHhccccccC--CCccchhhhhhhhhhhhhhccccccchhhHHHHHhhhcccc
Confidence 11 000 001113455666777654222 11122221 1111111111111 11111 1111111
Q ss_pred -ccccccHHHHHHhhcC---------CCCCeEEeCccccCCCCCCCCCChhcHhHHHHHhhcCCCCcEEEEeecCCccCC
Q 043290 216 -TFHELEPYAVNAFSGD---------LNPPLYTVGPVLHLKSQPNPDLDEAQYQKIFQWLDDLAESSVVFLCFGSSGSFD 285 (430)
Q Consensus 216 -s~~~le~~~~~~~~~~---------~~~~~~~VGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vVyvsfGS~~~~~ 285 (430)
+..++.......+.+. ..|++++||++..... .+++++++.|++...++++|||||||+....
T Consensus 218 ~~~~~~~~~~~l~l~ns~~~ld~prp~~p~v~~vGgl~~~~~-------~~l~~~~~~~~~~~~~~~vv~vsfGs~~~~~ 290 (500)
T PF00201_consen 218 FSFRELLSNASLVLINSHPSLDFPRPLLPNVVEVGGLHIKPA-------KPLPEELWNFLDSSGKKGVVYVSFGSIVSSM 290 (500)
T ss_dssp GGCHHHHHHHHHCCSSTEEE----HHHHCTSTTGCGC-S-----------TCHHHHHHHTSTTTTTEEEEEE-TSSSTT-
T ss_pred cccHHHHHHHHHHhhhccccCcCCcchhhcccccCccccccc-------cccccccchhhhccCCCCEEEEecCcccchh
Confidence 1222222223232221 3466888999865443 5678899999998556799999999998544
Q ss_pred H-HHHHHHHHHHHhCCCcEEEEEecCCCCCccccccccCCCCCCChhHHHhhcCceEEEeccchhhhhccCceeEEEecc
Q 043290 286 V-AQVKEIAIGLERSGYNFLWSLRVSCPKDEASAHRYVTNNGVFPEGFLERIKGRGMICGWVPQVEILAHKAIGGFVSHC 364 (430)
Q Consensus 286 ~-~~~~~~~~al~~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~pq~~iL~~~~~~~~itHg 364 (430)
+ +..++++++|++++++|||++++.. +. ..++|+++++|+||.+||+|+++++|||||
T Consensus 291 ~~~~~~~~~~~~~~~~~~~iW~~~~~~-----------------~~----~l~~n~~~~~W~PQ~~lL~hp~v~~fitHg 349 (500)
T PF00201_consen 291 PEEKLKEIAEAFENLPQRFIWKYEGEP-----------------PE----NLPKNVLIVKWLPQNDLLAHPRVKLFITHG 349 (500)
T ss_dssp HHHHHHHHHHHHHCSTTEEEEEETCSH-----------------GC----HHHTTEEEESS--HHHHHTSTTEEEEEES-
T ss_pred HHHHHHHHHHHHhhCCCcccccccccc-----------------cc----cccceEEEeccccchhhhhcccceeeeecc
Confidence 4 4488899999999999999987631 11 234689999999999999999999999999
Q ss_pred CchhHHHHHHhCCceeecccccccchhHHHHhhhhceeEEeecccccCCcccCHhHHHHHHHHhhC
Q 043290 365 GWNSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDLRLDYRVGSDLVMACDIESAVRCLMD 430 (430)
Q Consensus 365 G~~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~~~~~~~~~~~~~~l~~ai~~vl~ 430 (430)
|+||++||+++|||||++|+++||+.||+|+++. |+|+.++.+ .+|+++|.+||++||+
T Consensus 350 G~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~-G~g~~l~~~------~~~~~~l~~ai~~vl~ 408 (500)
T PF00201_consen 350 GLNSTQEALYHGVPMLGIPLFGDQPRNAARVEEK-GVGVVLDKN------DLTEEELRAAIREVLE 408 (500)
T ss_dssp -HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHHT-TSEEEEGGG------C-SHHHHHHHHHHHHH
T ss_pred ccchhhhhhhccCCccCCCCcccCCccceEEEEE-eeEEEEEec------CCcHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999998 999999976 8999999999999973
No 24
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=7.6e-43 Score=347.29 Aligned_cols=368 Identities=30% Similarity=0.404 Sum_probs=225.9
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecCCCCChhhHHhhhhc--c-CCCCCeEEEeCCCCCCCCCCCC
Q 043290 3 KAELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMKLAVAPWVDAYAKSL--T-DSQPRICIIDLPPVDPPLPDVL 79 (430)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~--~-~~~~~i~~~~~~~~~~~~~~~~ 79 (430)
+.|++++++|++||++|+..||++|+++||+ ||++++.......... .... . .....+.+....+..+...+..
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~--vt~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHN--VTVVTPSFNALKLSKS-SKSKSIKKINPPPFEFLTIPDGLPEGWEDD 81 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCc--eEEEEeechhcccCCc-ccceeeeeeecChHHhhhhhhhhccchHHH
Confidence 4689999999999999999999999999999 8999977432210000 0000 0 0000111111111111111100
Q ss_pred CCCHHHHHHHHHHhhhhhHHHHHHHhhccCCCCceEEEEcCCcchHHHHHHhcC-CceEEEecchhHHHHHHhhcccccc
Q 043290 80 KKSPEYFLSLVVESHLPNVKNIVSSRANSGSLQVTGLVLDFFCVSMVDIAKELS-LPSYIFLTSNLGFLGLMLYLPTRQD 158 (430)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vV~D~~~~~~~~~A~~lg-iP~v~~~~~~~~~~~~~~~~~~~~~ 158 (430)
..........+...+...+++...........++|++|+|.+..|...++...+ ++...+.+..+.......+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~------ 155 (496)
T KOG1192|consen 82 DLDISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLP------ 155 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCc------
Confidence 000111123344455555555444443323334999999998777777777664 8888887777654333222
Q ss_pred cccccccCCCcccccCCCCCCccC--CCCCcccccCC-Cch-HHHH---------HHHHhh--------ccCcEEEEcc-
Q 043290 159 RISTVFESSDHELLIPGITSPVPV--CVLPSCLFNKD-GGH-ATLV---------KLAQRF--------KDVDGIIVNT- 216 (430)
Q Consensus 159 ~~~~~~~~~~~~~~~p~~~~~~~~--~~~~~~~~~~~-~~~-~~~~---------~~~~~~--------~~~~~~~~~s- 216 (430)
....++|........ ..++....... ... .... ...... ....+++.++
T Consensus 156 ---------~~~~~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 226 (496)
T KOG1192|consen 156 ---------SPLSYVPSPFSLSSGDDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNAS 226 (496)
T ss_pred ---------CcccccCcccCccccccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCe
Confidence 112233332211110 00111110000 000 0000 000000 1122455555
Q ss_pred cccccHHHHHHhhcC-CCCCeEEeCccccCCCCCCCCCChhcHhHHHHHhhcCCCC--cEEEEeecCCc---cCCHHHHH
Q 043290 217 FHELEPYAVNAFSGD-LNPPLYTVGPVLHLKSQPNPDLDEAQYQKIFQWLDDLAES--SVVFLCFGSSG---SFDVAQVK 290 (430)
Q Consensus 217 ~~~le~~~~~~~~~~-~~~~~~~VGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~vVyvsfGS~~---~~~~~~~~ 290 (430)
+..++......+... ..+++++|||+....... ....+..|++..+.. ++|||||||+. ..+.++..
T Consensus 227 ~~~ln~~~~~~~~~~~~~~~v~~IG~l~~~~~~~-------~~~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~~~ 299 (496)
T KOG1192|consen 227 FIFLNSNPLLDFEPRPLLPKVIPIGPLHVKDSKQ-------KSPLPLEWLDILDESRHSVVYISFGSMVNSADLPEEQKK 299 (496)
T ss_pred EEEEccCcccCCCCCCCCCCceEECcEEecCccc-------cccccHHHHHHHhhccCCeEEEECCcccccccCCHHHHH
Confidence 788887766666443 368899999998763321 111455666666554 89999999998 89999999
Q ss_pred HHHHHHHhC-CCcEEEEEecCCCCCccccccccCCCCCCChhHHHhhcCceEEEeccchhhh-hccCceeEEEeccCchh
Q 043290 291 EIAIGLERS-GYNFLWSLRVSCPKDEASAHRYVTNNGVFPEGFLERIKGRGMICGWVPQVEI-LAHKAIGGFVSHCGWNS 368 (430)
Q Consensus 291 ~~~~al~~~-~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~pq~~i-L~~~~~~~~itHgG~~s 368 (430)
+++.+|+++ +++|+|+++.... ..+++++.++.++|+.+.+|+||.++ |.|+++++|||||||||
T Consensus 300 ~l~~~l~~~~~~~FiW~~~~~~~-------------~~~~~~~~~~~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nS 366 (496)
T KOG1192|consen 300 ELAKALESLQGVTFLWKYRPDDS-------------IYFPEGLPNRGRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNS 366 (496)
T ss_pred HHHHHHHhCCCceEEEEecCCcc-------------hhhhhcCCCCCcCceEEecCCCcHHHhcCCCcCcEEEECCcccH
Confidence 999999999 8999999987521 11233332223457888899999999 59999999999999999
Q ss_pred HHHHHHhCCceeecccccccchhHHHHhhhhceeEEeecc
Q 043290 369 ILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDLRLD 408 (430)
Q Consensus 369 ~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~~ 408 (430)
|+||+++|||||++|+++||+.||+++++.+++++....+
T Consensus 367 t~E~~~~GvP~v~~Plf~DQ~~Na~~i~~~g~~~v~~~~~ 406 (496)
T KOG1192|consen 367 TLESIYSGVPMVCVPLFGDQPLNARLLVRHGGGGVLDKRD 406 (496)
T ss_pred HHHHHhcCCceecCCccccchhHHHHHHhCCCEEEEehhh
Confidence 9999999999999999999999999999996666655543
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=4.5e-42 Score=332.69 Aligned_cols=351 Identities=17% Similarity=0.101 Sum_probs=223.0
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecCCCCChhhHHhhhhccCCCCCeEEEeCCCCCCCCCCC---C-
Q 043290 4 AELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMKLAVAPWVDAYAKSLTDSQPRICIIDLPPVDPPLPDV---L- 79 (430)
Q Consensus 4 ~~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~- 79 (430)
+||+|+++|+.||++|++.||++|++|||+ |++++++. ++..++ ..+++|.++++........ .
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~--V~~~t~~~-----~~~~v~-----~~G~~~~~~~~~~~~~~~~~~~~~ 68 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHE--VRVATPPE-----FADLVE-----AAGLEFVPVGGDPDELLASPERNA 68 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCe--EEEeeCHh-----HHHHHH-----HcCCceeeCCCCHHHHHhhhhhcc
Confidence 469999999999999999999999999999 99999872 112222 3468888887643110000 0
Q ss_pred ------CCCHHHHHHHHHHhhhhhHHHHHHHhhccCCCCceEEEEcCCcchHHHHHHhcCCceEEEecchhHHHHHHhhc
Q 043290 80 ------KKSPEYFLSLVVESHLPNVKNIVSSRANSGSLQVTGLVLDFFCVSMVDIAKELSLPSYIFLTSNLGFLGLMLYL 153 (430)
Q Consensus 80 ------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~ 153 (430)
..........+.......+++.++.+ ...++|+||+|.++.++..+|+++|||++.+++++....+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~--- 142 (401)
T cd03784 69 GLLLLGPGLLLGALRLLRREAEAMLDDLVAAA---RDWGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSAF--- 142 (401)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHh---cccCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccccC---
Confidence 00111222223333333333333332 135899999999888999999999999999987654210000
Q ss_pred ccccccccccccCCCcccccCCCCCCccCCCCCcccccCCCchHHHHHHHHhhccCcEEEEcc------cccc--cHHHH
Q 043290 154 PTRQDRISTVFESSDHELLIPGITSPVPVCVLPSCLFNKDGGHATLVKLAQRFKDVDGIIVNT------FHEL--EPYAV 225 (430)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s------~~~l--e~~~~ 225 (430)
.|... .. .......+.... +........+..++..|+-..+ ...+ -....
T Consensus 143 -------------------~~~~~-~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~ 200 (401)
T cd03784 143 -------------------PPPLG-RA-NLRLYALLEAEL-WQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFSPAV 200 (401)
T ss_pred -------------------CCccc-hH-HHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEecCccc
Confidence 00000 00 000000000000 0111111222222222211000 0000 00000
Q ss_pred HHhhcCCCCCeEEeC-ccccCCCCCCCCCChhcHhHHHHHhhcCCCCcEEEEeecCCccCCH-HHHHHHHHHHHhCCCcE
Q 043290 226 NAFSGDLNPPLYTVG-PVLHLKSQPNPDLDEAQYQKIFQWLDDLAESSVVFLCFGSSGSFDV-AQVKEIAIGLERSGYNF 303 (430)
Q Consensus 226 ~~~~~~~~~~~~~VG-pl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vVyvsfGS~~~~~~-~~~~~~~~al~~~~~~~ 303 (430)
......+.+...++| ++...+.. ...+.++..|++. .+++|||||||+..... +.+..+++++++.+.++
T Consensus 201 ~~~~~~~~~~~~~~g~~~~~~~~~------~~~~~~~~~~~~~--~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~ 272 (401)
T cd03784 201 LPPPPDWPRFDLVTGYGFRDVPYN------GPPPPELWLFLAA--GRPPVYVGFGSMVVRDPEALARLDVEAVATLGQRA 272 (401)
T ss_pred CCCCCCccccCcEeCCCCCCCCCC------CCCCHHHHHHHhC--CCCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeE
Confidence 011111233355665 33322221 2345678889886 46899999999986555 56677999999999999
Q ss_pred EEEEecCCCCCccccccccCCCCCCChhHHHhhcCceEEEeccchhhhhccCceeEEEeccCchhHHHHHHhCCceeecc
Q 043290 304 LWSLRVSCPKDEASAHRYVTNNGVFPEGFLERIKGRGMICGWVPQVEILAHKAIGGFVSHCGWNSILESLWYGVPIATWP 383 (430)
Q Consensus 304 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~pq~~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~P 383 (430)
||+.+..... . ...++|+++.+|+||.++|+|+++ ||||||+||++||+++|||+|++|
T Consensus 273 i~~~g~~~~~-----------~--------~~~~~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~GvP~v~~P 331 (401)
T cd03784 273 ILSLGWGGLG-----------A--------EDLPDNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGVPQLVVP 331 (401)
T ss_pred EEEccCcccc-----------c--------cCCCCceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcCCCEEeeC
Confidence 9999876210 0 123468999999999999999998 999999999999999999999999
Q ss_pred cccccchhHHHHhhhhceeEEeecccccCCcccCHhHHHHHHHHhhC
Q 043290 384 IYAEQQLNAFRMVKEQGLALDLRLDYRVGSDLVMACDIESAVRCLMD 430 (430)
Q Consensus 384 ~~~DQ~~~a~rv~~~~G~G~~~~~~~~~~~~~~~~~~l~~ai~~vl~ 430 (430)
+..||+.||+|+++. |+|+.+..+ .+++++|.++|+++|+
T Consensus 332 ~~~dQ~~~a~~~~~~-G~g~~l~~~------~~~~~~l~~al~~~l~ 371 (401)
T cd03784 332 FFGDQPFWAARVAEL-GAGPALDPR------ELTAERLAAALRRLLD 371 (401)
T ss_pred CCCCcHHHHHHHHHC-CCCCCCCcc------cCCHHHHHHHHHHHhC
Confidence 999999999999997 999988765 6899999999999874
No 26
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=3.8e-40 Score=317.78 Aligned_cols=344 Identities=18% Similarity=0.230 Sum_probs=218.6
Q ss_pred EcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecCCCCChhhHHhhhhccCCCCCeEEEeCCCCCCC--CC-CCCCCCHHH
Q 043290 9 VPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMKLAVAPWVDAYAKSLTDSQPRICIIDLPPVDPP--LP-DVLKKSPEY 85 (430)
Q Consensus 9 ~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~-~~~~~~~~~ 85 (430)
+.+|++||++|++.||++|++|||+ |++++++. +...++ ..+++|.+++..... .. +....+...
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~--V~~~~~~~-----~~~~v~-----~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHR--VTYATTEE-----FAERVE-----AAGAEFVLYGSALPPPDNPPENTEEEPID 68 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCe--EEEEeCHH-----HHHHHH-----HcCCEEEecCCcCccccccccccCcchHH
Confidence 4689999999999999999999999 99999872 222222 246888888765322 11 011112233
Q ss_pred HHHHHHHhhhhhHHHHHHHhhccCCCCceEEEEcCCcchHHHHHHhcCCceEEEecchhHHHHHHhhccccccccccccc
Q 043290 86 FLSLVVESHLPNVKNIVSSRANSGSLQVTGLVLDFFCVSMVDIAKELSLPSYIFLTSNLGFLGLMLYLPTRQDRISTVFE 165 (430)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (430)
.+..+...+...+..+.+. .+ ..++|+||+|.+++++..+|+++|||++.+++..... ..++..
T Consensus 69 ~~~~~~~~~~~~~~~l~~~-~~--~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~----~~~~~~--------- 132 (392)
T TIGR01426 69 IIEKLLDEAEDVLPQLEEA-YK--GDRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAAN----EEFEEM--------- 132 (392)
T ss_pred HHHHHHHHHHHHHHHHHHH-hc--CCCCCEEEECCccHHHHHHHHHhCCCEEEEehhhccc----cccccc---------
Confidence 3333333333333333222 22 3489999999998899999999999999886443210 000000
Q ss_pred CCCcccccCCCCCCccCCCCCcccccCCCchHHHHHHHHhhccCcEEEEccc-----------ccccHHHHHHhhcCCCC
Q 043290 166 SSDHELLIPGITSPVPVCVLPSCLFNKDGGHATLVKLAQRFKDVDGIIVNTF-----------HELEPYAVNAFSGDLNP 234 (430)
Q Consensus 166 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-----------~~le~~~~~~~~~~~~~ 234 (430)
..+ ..+.+. ....... + ..+.+.+..+.+++..|+-..+. -...++.+......+.+
T Consensus 133 --~~~-~~~~~~---~~~~~~~--~----~~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 200 (392)
T TIGR01426 133 --VSP-AGEGSA---EEGAIAE--R----GLAEYVARLSALLEEHGITTPPVEFLAAPRRDLNLVYTPKAFQPAGETFDD 200 (392)
T ss_pred --ccc-cchhhh---hhhcccc--c----hhHHHHHHHHHHHHHhCCCCCCHHHHhcCCcCcEEEeCChHhCCCccccCC
Confidence 000 000000 0000000 0 01111111222221111100000 00111111111112345
Q ss_pred CeEEeCccccCCCCCCCCCChhcHhHHHHHhhcCCCCcEEEEeecCCccCCHHHHHHHHHHHHhCCCcEEEEEecCCCCC
Q 043290 235 PLYTVGPVLHLKSQPNPDLDEAQYQKIFQWLDDLAESSVVFLCFGSSGSFDVAQVKEIAIGLERSGYNFLWSLRVSCPKD 314 (430)
Q Consensus 235 ~~~~VGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vVyvsfGS~~~~~~~~~~~~~~al~~~~~~~vw~~~~~~~~~ 314 (430)
+++++||+...... ...|....+++++|||||||+....++.++++++++++.++++||..+.....
T Consensus 201 ~~~~~Gp~~~~~~~------------~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~~- 267 (392)
T TIGR01426 201 SFTFVGPCIGDRKE------------DGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVDP- 267 (392)
T ss_pred CeEEECCCCCCccc------------cCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCCh-
Confidence 59999997643321 11266555567899999999877777788889999999999999998765210
Q ss_pred ccccccccCCCCCCChhHHHhhcCceEEEeccchhhhhccCceeEEEeccCchhHHHHHHhCCceeecccccccchhHHH
Q 043290 315 EASAHRYVTNNGVFPEGFLERIKGRGMICGWVPQVEILAHKAIGGFVSHCGWNSILESLWYGVPIATWPIYAEQQLNAFR 394 (430)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~pq~~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~DQ~~~a~r 394 (430)
..+ ...++|+.+.+|+||.++|+++++ +|||||+||++||+++|||+|++|...||+.||++
T Consensus 268 ---------------~~~-~~~~~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~ 329 (392)
T TIGR01426 268 ---------------ADL-GELPPNVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMTARR 329 (392)
T ss_pred ---------------hHh-ccCCCCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHHHHHHH
Confidence 011 113468899999999999999998 99999999999999999999999999999999999
Q ss_pred HhhhhceeEEeecccccCCcccCHhHHHHHHHHhhC
Q 043290 395 MVKEQGLALDLRLDYRVGSDLVMACDIESAVRCLMD 430 (430)
Q Consensus 395 v~~~~G~G~~~~~~~~~~~~~~~~~~l~~ai~~vl~ 430 (430)
+++. |+|+.+..+ .+++++|+++|+++|+
T Consensus 330 l~~~-g~g~~l~~~------~~~~~~l~~ai~~~l~ 358 (392)
T TIGR01426 330 IAEL-GLGRHLPPE------EVTAEKLREAVLAVLS 358 (392)
T ss_pred HHHC-CCEEEeccc------cCCHHHHHHHHHHHhc
Confidence 9986 999988765 7899999999999874
No 27
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=2e-37 Score=295.28 Aligned_cols=353 Identities=18% Similarity=0.211 Sum_probs=207.0
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecCCCCChhhHHhhhhccCCCCCeEEEeCCCCCC-CCCCCCCCC
Q 043290 4 AELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMKLAVAPWVDAYAKSLTDSQPRICIIDLPPVDP-PLPDVLKKS 82 (430)
Q Consensus 4 ~~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~ 82 (430)
+||+++..|++||++|+++||++|.++||+ |++++++ .+.+.++..+ +.|..++.... .........
T Consensus 2 mkil~~~~~~~Ghv~p~~aL~~eL~~~ghe--V~~~~~~--------~~~~~ve~ag--~~f~~~~~~~~~~~~~~~~~~ 69 (406)
T COG1819 2 MKILFVVCGAYGHVNPCLALGKELRRRGHE--VVFASTG--------KFKEFVEAAG--LAFVAYPIRDSELATEDGKFA 69 (406)
T ss_pred ceEEEEeccccccccchHHHHHHHHhcCCe--EEEEeCH--------HHHHHHHHhC--cceeeccccCChhhhhhhhhh
Confidence 569999999999999999999999999999 9999988 3444443333 66666554311 111100011
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHhhccCCCCceEEEEcCCcchHHHHHHhcCCceEEEecchhHHHHHHhhcccccccccc
Q 043290 83 PEYFLSLVVESHLPNVKNIVSSRANSGSLQVTGLVLDFFCVSMVDIAKELSLPSYIFLTSNLGFLGLMLYLPTRQDRIST 162 (430)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (430)
....+............+.++-+.+ ..+|.++.|...+.+ .+++..++|++.......+....... .. .
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~e---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~ 138 (406)
T COG1819 70 GVKSFRRLLQQFKKLIRELLELLRE---LEPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAGL------PL-P 138 (406)
T ss_pred ccchhHHHhhhhhhhhHHHHHHHHh---cchhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCccccc------Cc-c
Confidence 1111111111111122222222222 378888877655444 77888999977655443321111100 00 0
Q ss_pred cccCCCcccccCCCCCCccCCCCCcccccCCCchHHHHHHHHhhccCcE--EEEccccccc----HHHHHHhhcCCC---
Q 043290 163 VFESSDHELLIPGITSPVPVCVLPSCLFNKDGGHATLVKLAQRFKDVDG--IIVNTFHELE----PYAVNAFSGDLN--- 233 (430)
Q Consensus 163 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~~~le----~~~~~~~~~~~~--- 233 (430)
..... .....+..+ ........... ..........+...+ +..+.+..+. .....+......
T Consensus 139 ~~~~~-~~~~~~~~~--~~~~~~~~~~~------~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (406)
T COG1819 139 PVGIA-GKLPIPLYP--LPPRLVRPLIF------ARSWLPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPPGD 209 (406)
T ss_pred ccccc-ccccccccc--cChhhcccccc------chhhhhhhhhhhhccccccccchHHHhcCCCCccccccccccCCCC
Confidence 00000 000001100 00000000000 000011111111111 1111100000 000001110011
Q ss_pred --CC-eEEeCccccCCCCCCCCCChhcHhHHHHHhhcCCCCcEEEEeecCCccCCHHHHHHHHHHHHhCCCcEEEEEecC
Q 043290 234 --PP-LYTVGPVLHLKSQPNPDLDEAQYQKIFQWLDDLAESSVVFLCFGSSGSFDVAQVKEIAIGLERSGYNFLWSLRVS 310 (430)
Q Consensus 234 --~~-~~~VGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vVyvsfGS~~~~~~~~~~~~~~al~~~~~~~vw~~~~~ 310 (430)
|. ..++||+..... .+...|... ++++||+||||+... .+.++.+++++++++.++|.+.+..
T Consensus 210 ~~p~~~~~~~~~~~~~~-----------~~~~~~~~~--d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~~ 275 (406)
T COG1819 210 RLPFIGPYIGPLLGEAA-----------NELPYWIPA--DRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGGA 275 (406)
T ss_pred CCCCCcCcccccccccc-----------ccCcchhcC--CCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEecccc
Confidence 11 344555532222 223333333 578999999999866 8888899999999999999999773
Q ss_pred CCCCccccccccCCCCCCChhHHHhhcCceEEEeccchhhhhccCceeEEEeccCchhHHHHHHhCCceeecccccccch
Q 043290 311 CPKDEASAHRYVTNNGVFPEGFLERIKGRGMICGWVPQVEILAHKAIGGFVSHCGWNSILESLWYGVPIATWPIYAEQQL 390 (430)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~pq~~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~DQ~~ 390 (430)
.. .... .++|+++.+|+||.++|+++++ ||||||+|||+|||++|||+|++|...||+.
T Consensus 276 ~~-----------~~~~--------~p~n~~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~ 334 (406)
T COG1819 276 RD-----------TLVN--------VPDNVIVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVIPDGADQPL 334 (406)
T ss_pred cc-----------cccc--------CCCceEEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEecCCcchhH
Confidence 11 0122 3459999999999999999999 9999999999999999999999999999999
Q ss_pred hHHHHhhhhceeEEeecccccCCcccCHhHHHHHHHHhhC
Q 043290 391 NAFRMVKEQGLALDLRLDYRVGSDLVMACDIESAVRCLMD 430 (430)
Q Consensus 391 ~a~rv~~~~G~G~~~~~~~~~~~~~~~~~~l~~ai~~vl~ 430 (430)
||.|+++. |+|..++.+ .++++.|+++|+++|+
T Consensus 335 nA~rve~~-G~G~~l~~~------~l~~~~l~~av~~vL~ 367 (406)
T COG1819 335 NAERVEEL-GAGIALPFE------ELTEERLRAAVNEVLA 367 (406)
T ss_pred HHHHHHHc-CCceecCcc------cCCHHHHHHHHHHHhc
Confidence 99999997 999999987 8999999999999985
No 28
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.89 E-value=8.3e-21 Score=178.14 Aligned_cols=306 Identities=18% Similarity=0.242 Sum_probs=180.6
Q ss_pred cEEEEEcCC-CCCCHHHHHHHHHHHHhCCCCeEEEEEecCCCCChhhHHhhhhccCCCCCeEEEeCCCCCCCCCCCCCCC
Q 043290 4 AELIFVPSP-GIGHLVSTLEFAKHLTDRDDRISVTLLSMKLAVAPWVDAYAKSLTDSQPRICIIDLPPVDPPLPDVLKKS 82 (430)
Q Consensus 4 ~~i~~~~~p-~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 82 (430)
|||++...+ +.||+.-.+.||++| |||+ |++++..... .+.+ ..+....++...... ++...+
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~--v~~~~~~~~~-----~~~~------~~~~~~~~~~~~~~~-~~~~~~ 64 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHE--VTFITSGPAP-----EFLK------PRFPVREIPGLGPIQ-ENGRLD 64 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCc--eEEEEcCCcH-----HHhc------cccCEEEccCceEec-cCCccc
Confidence 358887777 889999999999999 6999 8899976221 1221 112333333221111 111112
Q ss_pred HHHHHHHHH---HhhhhhHHHHHHHhhccCCCCceEEEEcCCcchHHHHHHhcCCceEEEecchhHHHHHHhhccccccc
Q 043290 83 PEYFLSLVV---ESHLPNVKNIVSSRANSGSLQVTGLVLDFFCVSMVDIAKELSLPSYIFLTSNLGFLGLMLYLPTRQDR 159 (430)
Q Consensus 83 ~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~D~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~ 159 (430)
....+.... ......+++..+.+ + ..+||+||+|. .+.+..+|+..|+|++.+...... .+
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~l-~--~~~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~~-----~~------- 128 (318)
T PF13528_consen 65 RWKTVRNNIRWLARLARRIRREIRWL-R--EFRPDLVISDF-YPLAALAARRAGIPVIVISNQYWF-----LH------- 128 (318)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHH-H--hcCCCEEEEcC-hHHHHHHHHhcCCCEEEEEehHHc-----cc-------
Confidence 222222111 11122222322222 2 24899999995 445667889999998877654331 00
Q ss_pred ccccccCCCcccccCCCCCCccCCCCCcccccCCCchHHHHHHHHh--hccCcEEEEcccccccHHHHHHhhcCCCCCeE
Q 043290 160 ISTVFESSDHELLIPGITSPVPVCVLPSCLFNKDGGHATLVKLAQR--FKDVDGIIVNTFHELEPYAVNAFSGDLNPPLY 237 (430)
Q Consensus 160 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~s~~~le~~~~~~~~~~~~~~~~ 237 (430)
+... +... .. ..+...+.... .......+.-++. ... ....+..
T Consensus 129 --------------~~~~--~~~~--------~~-~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~--------~~~~~~~ 174 (318)
T PF13528_consen 129 --------------PNFW--LPWD--------QD-FGRLIERYIDRYHFPPADRRLALSFY-PPL--------PPFFRVP 174 (318)
T ss_pred --------------ccCC--cchh--------hh-HHHHHHHhhhhccCCcccceecCCcc-ccc--------ccccccc
Confidence 0000 0000 00 11111111111 1222222222222 110 0112356
Q ss_pred EeCccccCCCCCCCCCChhcHhHHHHHhhcCCCCcEEEEeecCCccCCHHHHHHHHHHHHhCC-CcEEEEEecCCCCCcc
Q 043290 238 TVGPVLHLKSQPNPDLDEAQYQKIFQWLDDLAESSVVFLCFGSSGSFDVAQVKEIAIGLERSG-YNFLWSLRVSCPKDEA 316 (430)
Q Consensus 238 ~VGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vVyvsfGS~~~~~~~~~~~~~~al~~~~-~~~vw~~~~~~~~~~~ 316 (430)
++||+....... .. . .+++.|+|+||..... .++++++..+ +.+++. +....
T Consensus 175 ~~~p~~~~~~~~-------~~--------~-~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~~~~---- 227 (318)
T PF13528_consen 175 FVGPIIRPEIRE-------LP--------P-EDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GPNAA---- 227 (318)
T ss_pred ccCchhcccccc-------cC--------C-CCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cCCcc----
Confidence 688876443211 00 0 1356899999985432 6667777765 666665 44410
Q ss_pred ccccccCCCCCCChhHHHhhcCceEEEecc--chhhhhccCceeEEEeccCchhHHHHHHhCCceeeccc--ccccchhH
Q 043290 317 SAHRYVTNNGVFPEGFLERIKGRGMICGWV--PQVEILAHKAIGGFVSHCGWNSILESLWYGVPIATWPI--YAEQQLNA 392 (430)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--pq~~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~P~--~~DQ~~~a 392 (430)
. ...+|+.+..+. ...++|+.+++ +|+|||+||++|++++|+|+|++|. +.||..||
T Consensus 228 -----------~------~~~~ni~~~~~~~~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a 288 (318)
T PF13528_consen 228 -----------D------PRPGNIHVRPFSTPDFAELMAAADL--VISKGGYTTISEALALGKPALVIPRPGQDEQEYNA 288 (318)
T ss_pred -----------c------ccCCCEEEeecChHHHHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHH
Confidence 0 124588888765 67789999998 9999999999999999999999999 78999999
Q ss_pred HHHhhhhceeEEeecccccCCcccCHhHHHHHHHHh
Q 043290 393 FRMVKEQGLALDLRLDYRVGSDLVMACDIESAVRCL 428 (430)
Q Consensus 393 ~rv~~~~G~G~~~~~~~~~~~~~~~~~~l~~ai~~v 428 (430)
+++.+. |+|..++.+ ++++++|+++|+++
T Consensus 289 ~~l~~~-G~~~~~~~~------~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 289 RKLEEL-GLGIVLSQE------DLTPERLAEFLERL 317 (318)
T ss_pred HHHHHC-CCeEEcccc------cCCHHHHHHHHhcC
Confidence 999997 999998765 89999999999875
No 29
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.89 E-value=1.7e-20 Score=176.77 Aligned_cols=311 Identities=18% Similarity=0.149 Sum_probs=184.2
Q ss_pred CCCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecCCCCChhhHHhhhhccCCCCCeEEEeCCCCCCCCCCCCC
Q 043290 1 MKKAELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMKLAVAPWVDAYAKSLTDSQPRICIIDLPPVDPPLPDVLK 80 (430)
Q Consensus 1 m~~~~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 80 (430)
||+ |++..-++.||+.|.+++|++|.++||+ |.|+++....+. .+ ....++.+..++... ...
T Consensus 1 ~~~--i~~~~GGTGGHi~Pala~a~~l~~~g~~--v~~vg~~~~~e~-------~l-~~~~g~~~~~~~~~~---l~~-- 63 (352)
T PRK12446 1 MKK--IVFTGGGSAGHVTPNLAIIPYLKEDNWD--ISYIGSHQGIEK-------TI-IEKENIPYYSISSGK---LRR-- 63 (352)
T ss_pred CCe--EEEEcCCcHHHHHHHHHHHHHHHhCCCE--EEEEECCCcccc-------cc-CcccCCcEEEEeccC---cCC--
Confidence 775 9999999999999999999999999999 889997642221 11 111246666665321 100
Q ss_pred CCHHHHHHHHHHhhhhhHH--HHHHHhhccCCCCceEEEEcCCcch--HHHHHHhcCCceEEEecchhHHHHHHhhcccc
Q 043290 81 KSPEYFLSLVVESHLPNVK--NIVSSRANSGSLQVTGLVLDFFCVS--MVDIAKELSLPSYIFLTSNLGFLGLMLYLPTR 156 (430)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~D~vV~D~~~~~--~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~ 156 (430)
......+..........++ .++++ .+||+||+.-.... +..+|..+++|+++.-....
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~i~~~------~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~~------------ 125 (352)
T PRK12446 64 YFDLKNIKDPFLVMKGVMDAYVRIRK------LKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDMT------------ 125 (352)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHh------cCCCEEEecCchhhHHHHHHHHHcCCCEEEECCCCC------------
Confidence 1111122222222221111 22333 48999998643332 46778889999776542211
Q ss_pred cccccccccCCCcccccCCCCCCccCCCCCcccccCCCchHHHHHHHHhhccCcEEEEcccccccHHHHHHhhcCCCCCe
Q 043290 157 QDRISTVFESSDHELLIPGITSPVPVCVLPSCLFNKDGGHATLVKLAQRFKDVDGIIVNTFHELEPYAVNAFSGDLNPPL 236 (430)
Q Consensus 157 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~~~ 236 (430)
|++. .+... +..+.+ ..+|++-. ..+. ..++
T Consensus 126 -----------------~g~~------------------nr~~~------~~a~~v-~~~f~~~~----~~~~---~~k~ 156 (352)
T PRK12446 126 -----------------PGLA------------------NKIAL------RFASKI-FVTFEEAA----KHLP---KEKV 156 (352)
T ss_pred -----------------ccHH------------------HHHHH------HhhCEE-EEEccchh----hhCC---CCCe
Confidence 1110 00000 011111 22332211 1111 1347
Q ss_pred EEeCccccCCCCCCCCCChhcHhHHHHHhhcCCCCcEEEEeecCCccCCH-HHHHHHHHHHHhCCCcEEEEEecCCCCCc
Q 043290 237 YTVGPVLHLKSQPNPDLDEAQYQKIFQWLDDLAESSVVFLCFGSSGSFDV-AQVKEIAIGLERSGYNFLWSLRVSCPKDE 315 (430)
Q Consensus 237 ~~VGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vVyvsfGS~~~~~~-~~~~~~~~al~~~~~~~vw~~~~~~~~~~ 315 (430)
+.+|+-+...-.. ...+...+-+.-.+++++|+|.-||.-...- +.+.+++..+.. +++++|..|.+.
T Consensus 157 ~~tG~Pvr~~~~~------~~~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~-~~~vv~~~G~~~---- 225 (352)
T PRK12446 157 IYTGSPVREEVLK------GNREKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELLL-KYQIVHLCGKGN---- 225 (352)
T ss_pred EEECCcCCccccc------ccchHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhcc-CcEEEEEeCCch----
Confidence 7888654332110 0111111222222356799999999764333 223334444432 488999888651
Q ss_pred cccccccCCCCCCChhHHHhhcCceEEEecc-c-hhhhhccCceeEEEeccCchhHHHHHHhCCceeecccc-----ccc
Q 043290 316 ASAHRYVTNNGVFPEGFLERIKGRGMICGWV-P-QVEILAHKAIGGFVSHCGWNSILESLWYGVPIATWPIY-----AEQ 388 (430)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-p-q~~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~P~~-----~DQ 388 (430)
+.. .... ..+..+.+|+ + -.+++.++++ +|||||.+|+.|++++|+|+|++|+. .||
T Consensus 226 ------------~~~-~~~~-~~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q 289 (352)
T PRK12446 226 ------------LDD-SLQN-KEGYRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQ 289 (352)
T ss_pred ------------HHH-HHhh-cCCcEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCCCchH
Confidence 000 0001 1244555776 3 5578999998 99999999999999999999999985 489
Q ss_pred chhHHHHhhhhceeEEeecccccCCcccCHhHHHHHHHHhh
Q 043290 389 QLNAFRMVKEQGLALDLRLDYRVGSDLVMACDIESAVRCLM 429 (430)
Q Consensus 389 ~~~a~rv~~~~G~G~~~~~~~~~~~~~~~~~~l~~ai~~vl 429 (430)
..||..+++. |+|..+..+ .++++.|.+++++++
T Consensus 290 ~~Na~~l~~~-g~~~~l~~~------~~~~~~l~~~l~~ll 323 (352)
T PRK12446 290 ILNAESFERQ-GYASVLYEE------DVTVNSLIKHVEELS 323 (352)
T ss_pred HHHHHHHHHC-CCEEEcchh------cCCHHHHHHHHHHHH
Confidence 9999999997 999888754 789999999999876
No 30
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.83 E-value=2.3e-18 Score=161.34 Aligned_cols=69 Identities=23% Similarity=0.326 Sum_probs=61.0
Q ss_pred cCceEEEeccc--hhhhhccCceeEEEeccCchhHHHHHHhCCceeeccccc--ccchhHHHHhhhhceeEEeecc
Q 043290 337 KGRGMICGWVP--QVEILAHKAIGGFVSHCGWNSILESLWYGVPIATWPIYA--EQQLNAFRMVKEQGLALDLRLD 408 (430)
Q Consensus 337 ~~~~~v~~~~p--q~~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~--DQ~~~a~rv~~~~G~G~~~~~~ 408 (430)
++|+.+.+|.| ..+.|+.+++ +|||||++|++||+++|+|+|++|..+ ||..||+.+++. |+|+.+...
T Consensus 228 ~~~v~~~~~~~~~~~~~l~~ad~--vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~-g~~~~l~~~ 300 (321)
T TIGR00661 228 NENVEIRRITTDNFKELIKNAEL--VITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDL-GCGIALEYK 300 (321)
T ss_pred CCCEEEEECChHHHHHHHHhCCE--EEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHC-CCEEEcChh
Confidence 35889999997 5677788887 999999999999999999999999955 899999999997 999887754
No 31
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.74 E-value=2.6e-15 Score=140.02 Aligned_cols=307 Identities=19% Similarity=0.184 Sum_probs=179.6
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecCCCCChhhHHhhhhccCCCCCeEEEeCCCCCCCCCCCCCCCHH
Q 043290 5 ELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMKLAVAPWVDAYAKSLTDSQPRICIIDLPPVDPPLPDVLKKSPE 84 (430)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 84 (430)
+|++...++-||+.|.++|+++|.++|++ .|.++.+....+ .......++.++.++........ ...
T Consensus 2 ~ivl~~gGTGGHv~pAlAl~~~l~~~g~~-~v~~~~~~~~~e--------~~l~~~~~~~~~~I~~~~~~~~~----~~~ 68 (357)
T COG0707 2 KIVLTAGGTGGHVFPALALAEELAKRGWE-QVIVLGTGDGLE--------AFLVKQYGIEFELIPSGGLRRKG----SLK 68 (357)
T ss_pred eEEEEeCCCccchhHHHHHHHHHHhhCcc-EEEEecccccce--------eeeccccCceEEEEecccccccC----cHH
Confidence 48899999999999999999999999985 577776653221 11122235777766644322221 111
Q ss_pred HHHHHHHH--hhhhhHHHHHHHhhccCCCCceEEEEcCCcc--hHHHHHHhcCCceEEEecchhHHHHHHhhcccccccc
Q 043290 85 YFLSLVVE--SHLPNVKNIVSSRANSGSLQVTGLVLDFFCV--SMVDIAKELSLPSYIFLTSNLGFLGLMLYLPTRQDRI 160 (430)
Q Consensus 85 ~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~D~vV~D~~~~--~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 160 (430)
.+...+. ......+..+++. +||+||.---+. .+..+|..+|||.+..-....
T Consensus 69 -~~~~~~~~~~~~~~a~~il~~~------kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~~---------------- 125 (357)
T COG0707 69 -LLKAPFKLLKGVLQARKILKKL------KPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNAV---------------- 125 (357)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHc------CCCEEEecCCccccHHHHHHHhCCCCEEEEecCCC----------------
Confidence 1111111 1222334555555 999999854444 345667779999776643211
Q ss_pred cccccCCCcccccCCCCCCccCCCCCcccccCCCchHHHHHHHHhhccCcEEEEcccccccHHHHHHhhcCCCC--CeEE
Q 043290 161 STVFESSDHELLIPGITSPVPVCVLPSCLFNKDGGHATLVKLAQRFKDVDGIIVNTFHELEPYAVNAFSGDLNP--PLYT 238 (430)
Q Consensus 161 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~--~~~~ 238 (430)
||.-..+ ..+ .++.+ ..+|.+.+ ...+ ++..
T Consensus 126 -------------~G~ank~------------------~~~------~a~~V-~~~f~~~~---------~~~~~~~~~~ 158 (357)
T COG0707 126 -------------PGLANKI------------------LSK------FAKKV-ASAFPKLE---------AGVKPENVVV 158 (357)
T ss_pred -------------cchhHHH------------------hHH------hhcee-eecccccc---------ccCCCCceEE
Confidence 2211000 000 00111 11222211 0111 2666
Q ss_pred eC-ccccCCCCCCCCCChhcHhHHHHHhhcCCCCcEEEEeecCCccCCH-HHHHHHHHHHHhCCCcEEEEEecCCCCCcc
Q 043290 239 VG-PVLHLKSQPNPDLDEAQYQKIFQWLDDLAESSVVFLCFGSSGSFDV-AQVKEIAIGLERSGYNFLWSLRVSCPKDEA 316 (430)
Q Consensus 239 VG-pl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vVyvsfGS~~~~~~-~~~~~~~~al~~~~~~~vw~~~~~~~~~~~ 316 (430)
+| |+...-.. .+..-....... ++++|+|.=||.-...- +.+.++...+.+ +..+++..|.+.
T Consensus 159 tG~Pvr~~~~~--------~~~~~~~~~~~~-~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~~----- 223 (357)
T COG0707 159 TGIPVRPEFEE--------LPAAEVRKDGRL-DKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGKND----- 223 (357)
T ss_pred ecCcccHHhhc--------cchhhhhhhccC-CCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCcch-----
Confidence 76 44322110 111111111111 46799998887542221 222233333333 467777776651
Q ss_pred ccccccCCCCCCChhHHHhh-cCc-eEEEeccc-hhhhhccCceeEEEeccCchhHHHHHHhCCceeeccc-c---cccc
Q 043290 317 SAHRYVTNNGVFPEGFLERI-KGR-GMICGWVP-QVEILAHKAIGGFVSHCGWNSILESLWYGVPIATWPI-Y---AEQQ 389 (430)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~-~~~-~~v~~~~p-q~~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~P~-~---~DQ~ 389 (430)
+ +...... ..+ +.+.+|.. -.++++.+++ +||+.|.+|+.|.++.|+|+|.+|. . .||.
T Consensus 224 -----------~-~~~~~~~~~~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~ 289 (357)
T COG0707 224 -----------L-EELKSAYNELGVVRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAILVPYPPGADGHQE 289 (357)
T ss_pred -----------H-HHHHHHHhhcCcEEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCccchHH
Confidence 0 1111111 123 56667776 5678888888 9999999999999999999999996 2 3899
Q ss_pred hhHHHHhhhhceeEEeecccccCCcccCHhHHHHHHHHhhC
Q 043290 390 LNAFRMVKEQGLALDLRLDYRVGSDLVMACDIESAVRCLMD 430 (430)
Q Consensus 390 ~~a~rv~~~~G~G~~~~~~~~~~~~~~~~~~l~~ai~~vl~ 430 (430)
.||..+++. |.|..++-+ .+|.+++.+.|.+++.
T Consensus 290 ~NA~~l~~~-gaa~~i~~~------~lt~~~l~~~i~~l~~ 323 (357)
T COG0707 290 YNAKFLEKA-GAALVIRQS------ELTPEKLAELILRLLS 323 (357)
T ss_pred HHHHHHHhC-CCEEEeccc------cCCHHHHHHHHHHHhc
Confidence 999999998 999998866 7999999999998873
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.66 E-value=5.2e-14 Score=134.29 Aligned_cols=83 Identities=17% Similarity=0.216 Sum_probs=73.5
Q ss_pred ceEEEecc-chhhhhccCceeEEEeccCchhHHHHHHhCCceeeccc----ccccchhHHHHhhhhceeEEeecccccCC
Q 043290 339 RGMICGWV-PQVEILAHKAIGGFVSHCGWNSILESLWYGVPIATWPI----YAEQQLNAFRMVKEQGLALDLRLDYRVGS 413 (430)
Q Consensus 339 ~~~v~~~~-pq~~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~P~----~~DQ~~~a~rv~~~~G~G~~~~~~~~~~~ 413 (430)
++.+.+|+ +..++++.+++ +|+|+|.++++||+++|+|+|++|. .++|..++..+.+. |.|..+..+
T Consensus 236 ~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~-~~g~~~~~~----- 307 (357)
T PRK00726 236 NAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARALVDA-GAALLIPQS----- 307 (357)
T ss_pred cEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHC-CCEEEEEcc-----
Confidence 37778998 56799999999 9999999999999999999999997 46899999999997 999988765
Q ss_pred cccCHhHHHHHHHHhhC
Q 043290 414 DLVMACDIESAVRCLMD 430 (430)
Q Consensus 414 ~~~~~~~l~~ai~~vl~ 430 (430)
+++++.|+++|+++++
T Consensus 308 -~~~~~~l~~~i~~ll~ 323 (357)
T PRK00726 308 -DLTPEKLAEKLLELLS 323 (357)
T ss_pred -cCCHHHHHHHHHHHHc
Confidence 6789999999998874
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.66 E-value=3.2e-14 Score=135.38 Aligned_cols=313 Identities=17% Similarity=0.142 Sum_probs=173.2
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecCCCCChhhHHhhhhccCCCCCeEEEeCCCCCCCCCCCCCCCHH
Q 043290 5 ELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMKLAVAPWVDAYAKSLTDSQPRICIIDLPPVDPPLPDVLKKSPE 84 (430)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 84 (430)
||++......||....+.|++.|.++||+ |++++...... .... ...++++..++...... ....
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~e--v~v~~~~~~~~------~~~~--~~~~~~~~~~~~~~~~~-----~~~~ 65 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAE--VLFLGTKRGLE------ARLV--PKAGIPLHTIPVGGLRR-----KGSL 65 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCE--EEEEECCCcch------hhcc--cccCCceEEEEecCcCC-----CChH
Confidence 58899999999999999999999999999 88888653111 0100 11235555544321111 1111
Q ss_pred HHHHHHHHh--hhhhHHHHHHHhhccCCCCceEEEEcCC--cchHHHHHHhcCCceEEEecchhHHHHHHhhcccccccc
Q 043290 85 YFLSLVVES--HLPNVKNIVSSRANSGSLQVTGLVLDFF--CVSMVDIAKELSLPSYIFLTSNLGFLGLMLYLPTRQDRI 160 (430)
Q Consensus 85 ~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~D~vV~D~~--~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~ 160 (430)
..+...... ....+...+++ .+||+|++... ...+..++...|+|++..... .
T Consensus 66 ~~~~~~~~~~~~~~~~~~~i~~------~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~-~---------------- 122 (350)
T cd03785 66 KKLKAPFKLLKGVLQARKILKK------FKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQN-A---------------- 122 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh------cCCCEEEECCCCcchHHHHHHHHhCCCEEEEcCC-C----------------
Confidence 111111111 11122222332 48999998753 223456678889997642110 0
Q ss_pred cccccCCCcccccCCCCCCccCCCCCcccccCCCchHHHHHHHHhhccCcEEEEcccccccHHHHHHhhcCCCCCeEEeC
Q 043290 161 STVFESSDHELLIPGITSPVPVCVLPSCLFNKDGGHATLVKLAQRFKDVDGIIVNTFHELEPYAVNAFSGDLNPPLYTVG 240 (430)
Q Consensus 161 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~~~~~VG 240 (430)
.++ ..+.+ ..+..+.++..+-...+. + ...++..+|
T Consensus 123 ------------~~~-------------------~~~~~-----~~~~~~~vi~~s~~~~~~-----~---~~~~~~~i~ 158 (350)
T cd03785 123 ------------VPG-------------------LANRL-----LARFADRVALSFPETAKY-----F---PKDKAVVTG 158 (350)
T ss_pred ------------Ccc-------------------HHHHH-----HHHhhCEEEEcchhhhhc-----C---CCCcEEEEC
Confidence 000 00000 011234444432111110 1 123466777
Q ss_pred ccccCCCCCCCCCChhcHhHHHHHhhcCCCCcEEEEeecCCccCCH-HHHHHHHHHHHhCCCcEEEEEecCCCCCccccc
Q 043290 241 PVLHLKSQPNPDLDEAQYQKIFQWLDDLAESSVVFLCFGSSGSFDV-AQVKEIAIGLERSGYNFLWSLRVSCPKDEASAH 319 (430)
Q Consensus 241 pl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vVyvsfGS~~~~~~-~~~~~~~~al~~~~~~~vw~~~~~~~~~~~~~~ 319 (430)
........ ...+. ...+...+++++|++..|+...... +.+.++++.+.+.+..+++..|.+..
T Consensus 159 n~v~~~~~-------~~~~~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g~~------- 223 (350)
T cd03785 159 NPVREEIL-------ALDRE-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKGDL------- 223 (350)
T ss_pred CCCchHHh-------hhhhh-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCccH-------
Confidence 54332210 00111 2222222234456555555432111 12233444454344556666655410
Q ss_pred cccCCCCCCChhHHHhhcCceEEEecc-chhhhhccCceeEEEeccCchhHHHHHHhCCceeeccc----ccccchhHHH
Q 043290 320 RYVTNNGVFPEGFLERIKGRGMICGWV-PQVEILAHKAIGGFVSHCGWNSILESLWYGVPIATWPI----YAEQQLNAFR 394 (430)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~v~~~~-pq~~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~P~----~~DQ~~~a~r 394 (430)
+.+.+ ..+...+|+.+.+|. ...++|+.+++ +|+++|.+++.||+++|+|+|++|. ..+|..++..
T Consensus 224 ------~~l~~-~~~~~~~~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~ 294 (350)
T cd03785 224 ------EEVKK-AYEELGVNYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDHQTANARA 294 (350)
T ss_pred ------HHHHH-HHhccCCCeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHH
Confidence 11111 111113588899997 67789999998 9999999999999999999999986 4578899999
Q ss_pred HhhhhceeEEeecccccCCcccCHhHHHHHHHHhhC
Q 043290 395 MVKEQGLALDLRLDYRVGSDLVMACDIESAVRCLMD 430 (430)
Q Consensus 395 v~~~~G~G~~~~~~~~~~~~~~~~~~l~~ai~~vl~ 430 (430)
+.+. |.|..+..+ ..+.+++.++|+++++
T Consensus 295 l~~~-g~g~~v~~~------~~~~~~l~~~i~~ll~ 323 (350)
T cd03785 295 LVKA-GAAVLIPQE------ELTPERLAAALLELLS 323 (350)
T ss_pred HHhC-CCEEEEecC------CCCHHHHHHHHHHHhc
Confidence 9987 999888753 4689999999998863
No 34
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.46 E-value=2e-11 Score=111.57 Aligned_cols=103 Identities=15% Similarity=0.146 Sum_probs=77.2
Q ss_pred cEEEEeecCCccCCHHHHHHHHHHHHh--CCCcEEEEEecCCCCCccccccccCCCCCCChhHHHh--hcCceEEEeccc
Q 043290 272 SVVFLCFGSSGSFDVAQVKEIAIGLER--SGYNFLWSLRVSCPKDEASAHRYVTNNGVFPEGFLER--IKGRGMICGWVP 347 (430)
Q Consensus 272 ~vVyvsfGS~~~~~~~~~~~~~~al~~--~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~p 347 (430)
+.|+|+||..-. ......++++|.+ .+.++.+.+|.+.+. .+.+.+. ...|+.+..+++
T Consensus 171 ~~iLi~~GG~d~--~~~~~~~l~~l~~~~~~~~i~vv~G~~~~~---------------~~~l~~~~~~~~~i~~~~~~~ 233 (279)
T TIGR03590 171 RRVLVSFGGADP--DNLTLKLLSALAESQINISITLVTGSSNPN---------------LDELKKFAKEYPNIILFIDVE 233 (279)
T ss_pred CeEEEEeCCcCC--cCHHHHHHHHHhccccCceEEEEECCCCcC---------------HHHHHHHHHhCCCEEEEeCHH
Confidence 579999996432 2244567777765 356788888766211 1222211 235888889998
Q ss_pred h-hhhhccCceeEEEeccCchhHHHHHHhCCceeecccccccchhHHH
Q 043290 348 Q-VEILAHKAIGGFVSHCGWNSILESLWYGVPIATWPIYAEQQLNAFR 394 (430)
Q Consensus 348 q-~~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~DQ~~~a~r 394 (430)
+ .+++..+++ +||+|| +|++|+++.|+|+|++|+..+|..||+.
T Consensus 234 ~m~~lm~~aDl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 234 NMAELMNEADL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred HHHHHHHHCCE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 7 499999999 999999 9999999999999999999999999864
No 35
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.46 E-value=2.8e-11 Score=115.03 Aligned_cols=75 Identities=21% Similarity=0.193 Sum_probs=63.8
Q ss_pred chhhhhccCceeEEEeccCchhHHHHHHhCCceeecccc---cccchhHHHHhhhhceeEEeecccccCCcccCHhHHHH
Q 043290 347 PQVEILAHKAIGGFVSHCGWNSILESLWYGVPIATWPIY---AEQQLNAFRMVKEQGLALDLRLDYRVGSDLVMACDIES 423 (430)
Q Consensus 347 pq~~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~P~~---~DQ~~~a~rv~~~~G~G~~~~~~~~~~~~~~~~~~l~~ 423 (430)
.-.++|+.+++ +|+++|.++++||+++|+|+|+.|.. .+|..|+..+.+. |.|..+... +.++++|++
T Consensus 243 ~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~-~~G~~~~~~------~~~~~~l~~ 313 (348)
T TIGR01133 243 NMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDL-GAGLVIRQK------ELLPEKLLE 313 (348)
T ss_pred CHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHC-CCEEEEecc------cCCHHHHHH
Confidence 56788999998 99999988999999999999999863 4678888888886 999877654 567999999
Q ss_pred HHHHhhC
Q 043290 424 AVRCLMD 430 (430)
Q Consensus 424 ai~~vl~ 430 (430)
+|+++++
T Consensus 314 ~i~~ll~ 320 (348)
T TIGR01133 314 ALLKLLL 320 (348)
T ss_pred HHHHHHc
Confidence 9998874
No 36
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.44 E-value=9e-15 Score=123.51 Aligned_cols=135 Identities=22% Similarity=0.292 Sum_probs=93.1
Q ss_pred EEEEeecCCccCCH-HHHHHHHHHHHh--CCCcEEEEEecCCCCCccccccccCCCCCCChhHHHhhcCceEEEeccc-h
Q 043290 273 VVFLCFGSSGSFDV-AQVKEIAIGLER--SGYNFLWSLRVSCPKDEASAHRYVTNNGVFPEGFLERIKGRGMICGWVP-Q 348 (430)
Q Consensus 273 vVyvsfGS~~~~~~-~~~~~~~~al~~--~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~p-q 348 (430)
+|+|+.||.....- +.+..+...+.. ...++++..|.+.... .... .+....++.+.+|.+ .
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~~~------------~~~~--~~~~~~~v~~~~~~~~m 66 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNNYEE------------LKIK--VENFNPNVKVFGFVDNM 66 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCECHH------------HCCC--HCCTTCCCEEECSSSSH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCcHHH------------HHHH--HhccCCcEEEEechhhH
Confidence 48899997532101 111223333332 2578888888762110 0010 111125789999999 9
Q ss_pred hhhhccCceeEEEeccCchhHHHHHHhCCceeeccccc----ccchhHHHHhhhhceeEEeecccccCCcccCHhHHHHH
Q 043290 349 VEILAHKAIGGFVSHCGWNSILESLWYGVPIATWPIYA----EQQLNAFRMVKEQGLALDLRLDYRVGSDLVMACDIESA 424 (430)
Q Consensus 349 ~~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~----DQ~~~a~rv~~~~G~G~~~~~~~~~~~~~~~~~~l~~a 424 (430)
.+++..+++ +|||||.||++|++++|+|+|++|... +|..||..+++. |+|..+... ..+.+.|.++
T Consensus 67 ~~~m~~aDl--vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~-g~~~~~~~~------~~~~~~L~~~ 137 (167)
T PF04101_consen 67 AELMAAADL--VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKK-GAAIMLDES------ELNPEELAEA 137 (167)
T ss_dssp HHHHHHHSE--EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHC-CCCCCSECC------C-SCCCHHHH
T ss_pred HHHHHHcCE--EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHc-CCccccCcc------cCCHHHHHHH
Confidence 999999999 999999999999999999999999988 999999999997 999888765 6779999999
Q ss_pred HHHhhC
Q 043290 425 VRCLMD 430 (430)
Q Consensus 425 i~~vl~ 430 (430)
|++++.
T Consensus 138 i~~l~~ 143 (167)
T PF04101_consen 138 IEELLS 143 (167)
T ss_dssp HHCHCC
T ss_pred HHHHHc
Confidence 988763
No 37
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.42 E-value=2.2e-10 Score=110.30 Aligned_cols=133 Identities=17% Similarity=0.264 Sum_probs=90.2
Q ss_pred CCcEEEEeecCCccCCHHHHHHHHHHHHhC-CCcEEEEEecCCCCCccccccccCCCCCCChhHHHhhcCceEEEeccch
Q 043290 270 ESSVVFLCFGSSGSFDVAQVKEIAIGLERS-GYNFLWSLRVSCPKDEASAHRYVTNNGVFPEGFLERIKGRGMICGWVPQ 348 (430)
Q Consensus 270 ~~~vVyvsfGS~~~~~~~~~~~~~~al~~~-~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~pq 348 (430)
++++|++.-|+.... ..+..+++++.+. +.++++..|.+.. ..+.+ ....+..++|+.+.+|+++
T Consensus 201 ~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~~~-----------~~~~l-~~~~~~~~~~v~~~g~~~~ 266 (380)
T PRK13609 201 NKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKNEA-----------LKQSL-EDLQETNPDALKVFGYVEN 266 (380)
T ss_pred CCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCCHH-----------HHHHH-HHHHhcCCCcEEEEechhh
Confidence 345677766765422 2356677777653 5677776654310 00001 0111122357899999986
Q ss_pred -hhhhccCceeEEEeccCchhHHHHHHhCCceeec-ccccccchhHHHHhhhhceeEEeecccccCCcccCHhHHHHHHH
Q 043290 349 -VEILAHKAIGGFVSHCGWNSILESLWYGVPIATW-PIYAEQQLNAFRMVKEQGLALDLRLDYRVGSDLVMACDIESAVR 426 (430)
Q Consensus 349 -~~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~-P~~~DQ~~~a~rv~~~~G~G~~~~~~~~~~~~~~~~~~l~~ai~ 426 (430)
.+++..+++ +|+..|..|+.||+++|+|+|+. |..+.|..|+..+.+. |+|+.. -+.+++.++|+
T Consensus 267 ~~~l~~~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~-G~~~~~----------~~~~~l~~~i~ 333 (380)
T PRK13609 267 IDELFRVTSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERK-GAAVVI----------RDDEEVFAKTE 333 (380)
T ss_pred HHHHHHhccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhC-CcEEEE----------CCHHHHHHHHH
Confidence 489999998 99999988999999999999985 6667778888888776 888643 25678888888
Q ss_pred Hhh
Q 043290 427 CLM 429 (430)
Q Consensus 427 ~vl 429 (430)
+++
T Consensus 334 ~ll 336 (380)
T PRK13609 334 ALL 336 (380)
T ss_pred HHH
Confidence 776
No 38
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.37 E-value=5e-11 Score=114.26 Aligned_cols=74 Identities=11% Similarity=0.067 Sum_probs=61.4
Q ss_pred chhhhhccCceeEEEeccCchhHHHHHHhCCceeec----cccc---------ccchhHHHHhhhhceeEEeecccccCC
Q 043290 347 PQVEILAHKAIGGFVSHCGWNSILESLWYGVPIATW----PIYA---------EQQLNAFRMVKEQGLALDLRLDYRVGS 413 (430)
Q Consensus 347 pq~~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~----P~~~---------DQ~~~a~rv~~~~G~G~~~~~~~~~~~ 413 (430)
....+++.+++ +|+-+|..|+ |++++|+|+|++ |+.. +|..|+..++.. ++...+.-+
T Consensus 260 ~~~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~~-~~~pel~q~----- 330 (385)
T TIGR00215 260 DARKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILANR-LLVPELLQE----- 330 (385)
T ss_pred hHHHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcCC-ccchhhcCC-----
Confidence 34568999998 9999999887 999999999999 8743 288899988887 877665433
Q ss_pred cccCHhHHHHHHHHhhC
Q 043290 414 DLVMACDIESAVRCLMD 430 (430)
Q Consensus 414 ~~~~~~~l~~ai~~vl~ 430 (430)
.+|++.|.+++.++|+
T Consensus 331 -~~~~~~l~~~~~~ll~ 346 (385)
T TIGR00215 331 -ECTPHPLAIALLLLLE 346 (385)
T ss_pred -CCCHHHHHHHHHHHhc
Confidence 7999999999999873
No 39
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.33 E-value=4e-10 Score=100.81 Aligned_cols=330 Identities=18% Similarity=0.188 Sum_probs=185.9
Q ss_pred CCcEEEEEcCC--CCCCHHHHHHHHHHHHhC--CCCeEEEEEecCCCCChhhHHhhhhccCCCCCeEEEeCCCCCCCC--
Q 043290 2 KKAELIFVPSP--GIGHLVSTLEFAKHLTDR--DDRISVTLLSMKLAVAPWVDAYAKSLTDSQPRICIIDLPPVDPPL-- 75 (430)
Q Consensus 2 ~~~~i~~~~~p--~~GH~~P~l~La~~L~~r--GH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-- 75 (430)
+.+||+|++.- +-||+-=.+.+|++|.+. |-+ |++++....... .....+++++.+|.....+
T Consensus 8 ~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~--Il~IsG~~~~~~---------F~~~~gVd~V~LPsl~k~~~G 76 (400)
T COG4671 8 KRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFD--ILIISGGPPAGG---------FPGPAGVDFVKLPSLIKGDNG 76 (400)
T ss_pred ccceEEEEehhhccchHHHHHHHHHHHHhhcccCce--EEEEeCCCccCC---------CCCcccCceEecCceEecCCC
Confidence 34589999975 569999999999999999 866 999997643321 1224679999998654111
Q ss_pred ---CCCCCCCHHHHHHHHHHhhhhhHHHHHHHhhccCCCCceEEEEcCCcchHHHHHHhcCCceEEEecchhHHHHHHhh
Q 043290 76 ---PDVLKKSPEYFLSLVVESHLPNVKNIVSSRANSGSLQVTGLVLDFFCVSMVDIAKELSLPSYIFLTSNLGFLGLMLY 152 (430)
Q Consensus 76 ---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~~~~~~~~ 152 (430)
......+.. .+.+...+.+....+.. +||++|+|.+-.+.. .|.+ | .+-+
T Consensus 77 ~~~~~d~~~~l~----e~~~~Rs~lil~t~~~f------kPDi~IVd~~P~Glr--~EL~--p-------------tL~y 129 (400)
T COG4671 77 EYGLVDLDGDLE----ETKKLRSQLILSTAETF------KPDIFIVDKFPFGLR--FELL--P-------------TLEY 129 (400)
T ss_pred ceeeeecCCCHH----HHHHHHHHHHHHHHHhc------CCCEEEEeccccchh--hhhh--H-------------HHHH
Confidence 112222322 23333444555555555 999999997544411 1111 1 0000
Q ss_pred cccccccccccccCCCcccccCCCCCCccCCCCCcccccCCCchHHHHHHHHhhcc-CcEEEE---cccccccHHHHHHh
Q 043290 153 LPTRQDRISTVFESSDHELLIPGITSPVPVCVLPSCLFNKDGGHATLVKLAQRFKD-VDGIIV---NTFHELEPYAVNAF 228 (430)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~s~~~le~~~~~~~ 228 (430)
... . .... +-++ -...|.+....... ..+...+ .+++ .+.+.+ +.|.++...+....
T Consensus 130 l~~---~-------~t~~--vL~l---r~i~D~p~~~~~~w-~~~~~~~---~I~r~yD~V~v~GdP~f~d~~~~~~~~~ 190 (400)
T COG4671 130 LKT---T-------GTRL--VLGL---RSIRDIPQELEADW-RRAETVR---LINRFYDLVLVYGDPDFYDPLTEFPFAP 190 (400)
T ss_pred Hhh---c-------CCcc--eeeh---Hhhhhchhhhccch-hhhHHHH---HHHHhheEEEEecCccccChhhcCCccH
Confidence 000 0 0000 0000 01222232221110 0111122 2222 233443 34444443321100
Q ss_pred hcCCCCCeEEeCccccCCCCCCCCCChhcHhHHHHHhhcCCCCcEEEEeecCCccCCHHHHHHHHHHHHh-CCCc--EEE
Q 043290 229 SGDLNPPLYTVGPVLHLKSQPNPDLDEAQYQKIFQWLDDLAESSVVFLCFGSSGSFDVAQVKEIAIGLER-SGYN--FLW 305 (430)
Q Consensus 229 ~~~~~~~~~~VGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vVyvsfGS~~~~~~~~~~~~~~al~~-~~~~--~vw 305 (430)
.--..++|+|-+....... +.+. ... +.+.-|+||-|--.. ..+.+...++|-.. .+.+ .+.
T Consensus 191 --~i~~k~~ytG~vq~~~~~~------~~p~-----~~~-pE~~~Ilvs~GGG~d-G~eLi~~~l~A~~~l~~l~~~~~i 255 (400)
T COG4671 191 --AIRAKMRYTGFVQRSLPHL------PLPP-----HEA-PEGFDILVSVGGGAD-GAELIETALAAAQLLAGLNHKWLI 255 (400)
T ss_pred --hhhhheeEeEEeeccCcCC------CCCC-----cCC-CccceEEEecCCChh-hHHHHHHHHHHhhhCCCCCcceEE
Confidence 0113488999883211110 0000 001 244578888886322 34445554544333 4555 455
Q ss_pred EEecCCCCCccccccccCCCCCCChhHHH----hhc--CceEEEeccc-hhhhhccCceeEEEeccCchhHHHHHHhCCc
Q 043290 306 SLRVSCPKDEASAHRYVTNNGVFPEGFLE----RIK--GRGMICGWVP-QVEILAHKAIGGFVSHCGWNSILESLWYGVP 378 (430)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~v~~~~p-q~~iL~~~~~~~~itHgG~~s~~eal~~GvP 378 (430)
.+|.. +|..-.+ ..+ +++.|..|-. -..++.-+.. .|+-||+|||+|=|++|||
T Consensus 256 vtGP~-----------------MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm~GYNTvCeILs~~k~ 316 (400)
T COG4671 256 VTGPF-----------------MPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARL--VVSMGGYNTVCEILSFGKP 316 (400)
T ss_pred EeCCC-----------------CCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhhe--eeecccchhhhHHHhCCCc
Confidence 55443 5654322 223 5778888765 5567777777 9999999999999999999
Q ss_pred eeeccccc---ccchhHHHHhhhhceeEEeecccccCCcccCHhHHHHHHHHhh
Q 043290 379 IATWPIYA---EQQLNAFRMVKEQGLALDLRLDYRVGSDLVMACDIESAVRCLM 429 (430)
Q Consensus 379 ~v~~P~~~---DQ~~~a~rv~~~~G~G~~~~~~~~~~~~~~~~~~l~~ai~~vl 429 (430)
.|++|... +|..-|.|+++. |+--.+-.+ .+++..++++|...+
T Consensus 317 aLivPr~~p~eEQliRA~Rl~~L-GL~dvL~pe------~lt~~~La~al~~~l 363 (400)
T COG4671 317 ALIVPRAAPREEQLIRAQRLEEL-GLVDVLLPE------NLTPQNLADALKAAL 363 (400)
T ss_pred eEEeccCCCcHHHHHHHHHHHhc-CcceeeCcc------cCChHHHHHHHHhcc
Confidence 99999844 899999999885 988777665 899999999998765
No 40
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.27 E-value=5.9e-12 Score=102.87 Aligned_cols=124 Identities=14% Similarity=0.165 Sum_probs=75.8
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecCCCCChhhHHhhhhccCCCCCeEEEeCCCCCCCCCCCCCCCHHH
Q 043290 6 LIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMKLAVAPWVDAYAKSLTDSQPRICIIDLPPVDPPLPDVLKKSPEY 85 (430)
Q Consensus 6 i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 85 (430)
|+|.+.|+.||++|+++||++|.+|||+ |++.+++ .+.+.+ ...+++|.+++... .... ......
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~--V~~~~~~--------~~~~~v--~~~Gl~~~~~~~~~--~~~~-~~~~~~ 65 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHE--VRLATPP--------DFRERV--EAAGLEFVPIPGDS--RLPR-SLEPLA 65 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-E--EEEEETG--------GGHHHH--HHTT-EEEESSSCG--GGGH-HHHHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCe--EEEeecc--------cceecc--cccCceEEEecCCc--CcCc-ccchhh
Confidence 7899999999999999999999999999 8899987 222222 13569999987540 0000 000111
Q ss_pred HHHHHHHh--hhhhHHHHHHHhhc------cCCCCceEEEEcCCcchHHHHHHhcCCceEEEecchh
Q 043290 86 FLSLVVES--HLPNVKNIVSSRAN------SGSLQVTGLVLDFFCVSMVDIAKELSLPSYIFLTSNL 144 (430)
Q Consensus 86 ~~~~~~~~--~~~~~~~~l~~~~~------~~~~~~D~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~ 144 (430)
.+...... ....+.+.+.+... ......|+++.+.....+..+||++|||++.....+.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~ 132 (139)
T PF03033_consen 66 NLRRLARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPW 132 (139)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGG
T ss_pred hhhhHHHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCc
Confidence 11111111 11112222222211 1224678888888888889999999999998876655
No 41
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.16 E-value=1.9e-08 Score=96.98 Aligned_cols=130 Identities=14% Similarity=0.173 Sum_probs=89.3
Q ss_pred CCcEEEEeecCCccCCHHHHHHHHHHHHh--CCCcEEEEEecCCCCCccccccccCCCCCCChhHHHh--hcCceEEEec
Q 043290 270 ESSVVFLCFGSSGSFDVAQVKEIAIGLER--SGYNFLWSLRVSCPKDEASAHRYVTNNGVFPEGFLER--IKGRGMICGW 345 (430)
Q Consensus 270 ~~~vVyvsfGS~~~~~~~~~~~~~~al~~--~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~ 345 (430)
++++|++..|+... ...+..+++++.+ .+.++++..|.+. .+-+.+.+. ..+++.+.+|
T Consensus 201 ~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~~---------------~l~~~l~~~~~~~~~v~~~G~ 263 (391)
T PRK13608 201 DKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKSK---------------ELKRSLTAKFKSNENVLILGY 263 (391)
T ss_pred CCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCCH---------------HHHHHHHHHhccCCCeEEEec
Confidence 45688888887642 2345555655432 3467766655431 010112111 1347888899
Q ss_pred cch-hhhhccCceeEEEeccCchhHHHHHHhCCceeec-ccccccchhHHHHhhhhceeEEeecccccCCcccCHhHHHH
Q 043290 346 VPQ-VEILAHKAIGGFVSHCGWNSILESLWYGVPIATW-PIYAEQQLNAFRMVKEQGLALDLRLDYRVGSDLVMACDIES 423 (430)
Q Consensus 346 ~pq-~~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~-P~~~DQ~~~a~rv~~~~G~G~~~~~~~~~~~~~~~~~~l~~ 423 (430)
..+ .+++..+++ +|+-.|..|+.||+++|+|+|+. |.-+.|..|+..+.+. |+|+... +.+++.+
T Consensus 264 ~~~~~~~~~~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~-G~g~~~~----------~~~~l~~ 330 (391)
T PRK13608 264 TKHMNEWMASSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEEK-GFGKIAD----------TPEEAIK 330 (391)
T ss_pred cchHHHHHHhhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhC-CcEEEeC----------CHHHHHH
Confidence 864 468999999 99988888999999999999998 6666677899888887 9997533 5677778
Q ss_pred HHHHhh
Q 043290 424 AVRCLM 429 (430)
Q Consensus 424 ai~~vl 429 (430)
+|.+++
T Consensus 331 ~i~~ll 336 (391)
T PRK13608 331 IVASLT 336 (391)
T ss_pred HHHHHh
Confidence 777765
No 42
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.09 E-value=1.3e-07 Score=90.96 Aligned_cols=79 Identities=20% Similarity=0.159 Sum_probs=65.7
Q ss_pred CceEEEeccc-hhhhhccCceeEEEeccCchhHHHHHHhCCceeecccccccc-hhHHHHhhhhceeEEeecccccCCcc
Q 043290 338 GRGMICGWVP-QVEILAHKAIGGFVSHCGWNSILESLWYGVPIATWPIYAEQQ-LNAFRMVKEQGLALDLRLDYRVGSDL 415 (430)
Q Consensus 338 ~~~~v~~~~p-q~~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~DQ~-~~a~rv~~~~G~G~~~~~~~~~~~~~ 415 (430)
.++.+.+|++ -.+++..+++ +|+.+|.+|+.||+++|+|+|+.+....|. .|+..+.+. |.|+.+
T Consensus 265 ~~v~~~G~~~~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~-g~g~~~---------- 331 (382)
T PLN02605 265 IPVKVRGFVTNMEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDN-GFGAFS---------- 331 (382)
T ss_pred CCeEEEeccccHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHhC-Cceeec----------
Confidence 4678889987 5678888998 999999999999999999999998777776 688888876 999753
Q ss_pred cCHhHHHHHHHHhh
Q 043290 416 VMACDIESAVRCLM 429 (430)
Q Consensus 416 ~~~~~l~~ai~~vl 429 (430)
-++++|.++|++++
T Consensus 332 ~~~~~la~~i~~ll 345 (382)
T PLN02605 332 ESPKEIARIVAEWF 345 (382)
T ss_pred CCHHHHHHHHHHHH
Confidence 26788888888876
No 43
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.06 E-value=1.4e-08 Score=97.88 Aligned_cols=73 Identities=14% Similarity=0.055 Sum_probs=47.8
Q ss_pred hhhhhccCceeEEEeccCchhHHHHHHhCCceeecccccc--------cchh-----HHHHhhhhceeEEeecccccCCc
Q 043290 348 QVEILAHKAIGGFVSHCGWNSILESLWYGVPIATWPIYAE--------QQLN-----AFRMVKEQGLALDLRLDYRVGSD 414 (430)
Q Consensus 348 q~~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~D--------Q~~~-----a~rv~~~~G~G~~~~~~~~~~~~ 414 (430)
-..+++.+++ +|+-+|.+++ ||+++|+|+|+.|...- |..| +..+++. +++..+..+
T Consensus 255 ~~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~------ 324 (380)
T PRK00025 255 KREAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGR-ELVPELLQE------ 324 (380)
T ss_pred HHHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCC-CcchhhcCC------
Confidence 4678899998 9999998777 99999999999854321 1111 1222222 222222212
Q ss_pred ccCHhHHHHHHHHhhC
Q 043290 415 LVMACDIESAVRCLMD 430 (430)
Q Consensus 415 ~~~~~~l~~ai~~vl~ 430 (430)
..++++++++|.++++
T Consensus 325 ~~~~~~l~~~i~~ll~ 340 (380)
T PRK00025 325 EATPEKLARALLPLLA 340 (380)
T ss_pred CCCHHHHHHHHHHHhc
Confidence 6788999999988763
No 44
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.96 E-value=2.2e-06 Score=81.48 Aligned_cols=125 Identities=16% Similarity=0.106 Sum_probs=79.6
Q ss_pred cEEEEeecCCc-cCCHHHHHHHHHHHHhC-CCcEEEEEecCCCCCccccccccCCCCCCChhHHHhhcCceEEEeccchh
Q 043290 272 SVVFLCFGSSG-SFDVAQVKEIAIGLERS-GYNFLWSLRVSCPKDEASAHRYVTNNGVFPEGFLERIKGRGMICGWVPQV 349 (430)
Q Consensus 272 ~vVyvsfGS~~-~~~~~~~~~~~~al~~~-~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~pq~ 349 (430)
+.+++..|+.. .-..+.+.++++.+.+. +..+++. |.+.. ...+ +...+|+.+.+|+++.
T Consensus 197 ~~~i~~~G~~~~~k~~~~~i~~~~~l~~~~~~~l~i~-G~~~~----------------~~~~-~~~~~~v~~~g~~~~~ 258 (364)
T cd03814 197 RPVLLYVGRLAPEKNLEALLDADLPLRRRPPVRLVIV-GDGPA----------------RARL-EARYPNVHFLGFLDGE 258 (364)
T ss_pred CeEEEEEeccccccCHHHHHHHHHHhhhcCCceEEEE-eCCch----------------HHHH-hccCCcEEEEeccCHH
Confidence 45667777754 23334444555554432 4455544 33210 0011 1234588999999977
Q ss_pred h---hhccCceeEEEeccC----chhHHHHHHhCCceeecccccccchhHHHHhhhhceeEEeecccccCCcccCHhHHH
Q 043290 350 E---ILAHKAIGGFVSHCG----WNSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDLRLDYRVGSDLVMACDIE 422 (430)
Q Consensus 350 ~---iL~~~~~~~~itHgG----~~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~~~~~~~~~~~~~~l~ 422 (430)
+ ++..+++ +|..+. .+++.||+++|+|+|+.+..+ +...+.+. +.|.... .-+.+++.
T Consensus 259 ~~~~~~~~~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~----~~~~i~~~-~~g~~~~--------~~~~~~l~ 323 (364)
T cd03814 259 ELAAAYASADV--FVFPSRTETFGLVVLEAMASGLPVVAPDAGG----PADIVTDG-ENGLLVE--------PGDAEAFA 323 (364)
T ss_pred HHHHHHHhCCE--EEECcccccCCcHHHHHHHcCCCEEEcCCCC----chhhhcCC-cceEEcC--------CCCHHHHH
Confidence 6 6888888 776654 478999999999999887543 44555555 7887665 34677888
Q ss_pred HHHHHhh
Q 043290 423 SAVRCLM 429 (430)
Q Consensus 423 ~ai~~vl 429 (430)
++|.+++
T Consensus 324 ~~i~~l~ 330 (364)
T cd03814 324 AALAALL 330 (364)
T ss_pred HHHHHHH
Confidence 8888876
No 45
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=98.89 E-value=2.2e-06 Score=82.83 Aligned_cols=78 Identities=18% Similarity=0.127 Sum_probs=57.3
Q ss_pred cCceEEEeccchhhh---hccCceeEEEec----cCchhHHHHHHhCCceeecccccccchhHHHHhhhhceeEEeeccc
Q 043290 337 KGRGMICGWVPQVEI---LAHKAIGGFVSH----CGWNSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDLRLDY 409 (430)
Q Consensus 337 ~~~~~v~~~~pq~~i---L~~~~~~~~itH----gG~~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~~~ 409 (430)
.+++.+.+|+|+.++ +..+++ ++.. |--.++.||+++|+|+|+....+ ....+.+. +.|...+.
T Consensus 282 ~~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~~----~~e~i~~~-~~g~~~~~-- 352 (398)
T cd03800 282 IDRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVGG----PRDIVVDG-VTGLLVDP-- 352 (398)
T ss_pred CceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCCC----HHHHccCC-CCeEEeCC--
Confidence 357888999998765 888888 6643 22358999999999999876543 44455554 67876653
Q ss_pred ccCCcccCHhHHHHHHHHhh
Q 043290 410 RVGSDLVMACDIESAVRCLM 429 (430)
Q Consensus 410 ~~~~~~~~~~~l~~ai~~vl 429 (430)
-+.++++++|.+++
T Consensus 353 ------~~~~~l~~~i~~l~ 366 (398)
T cd03800 353 ------RDPEALAAALRRLL 366 (398)
T ss_pred ------CCHHHHHHHHHHHH
Confidence 36889999988875
No 46
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=98.86 E-value=3.6e-06 Score=79.76 Aligned_cols=79 Identities=28% Similarity=0.175 Sum_probs=57.1
Q ss_pred cCceEEEeccchhhh---hccCceeEEEe----ccCc-hhHHHHHHhCCceeecccccccchhHHHHhhhhceeEEeecc
Q 043290 337 KGRGMICGWVPQVEI---LAHKAIGGFVS----HCGW-NSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDLRLD 408 (430)
Q Consensus 337 ~~~~~v~~~~pq~~i---L~~~~~~~~it----HgG~-~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~~ 408 (430)
.+++.+.+++++.++ +..+++ +|. ..|+ .++.||+++|+|+|+.+. ......+.+. +.|..+..
T Consensus 242 ~~~v~~~g~~~~~~~~~~~~~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i~~~-~~g~~~~~- 313 (359)
T cd03823 242 DPRVEFLGAYPQEEIDDFYAEIDV--LVVPSIWPENFPLVIREALAAGVPVIASDI----GGMAELVRDG-VNGLLFPP- 313 (359)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEEcCcccCCCChHHHHHHHCCCCEEECCC----CCHHHHhcCC-CcEEEECC-
Confidence 368888999987765 888888 552 2333 479999999999998664 3455555554 56776663
Q ss_pred cccCCcccCHhHHHHHHHHhhC
Q 043290 409 YRVGSDLVMACDIESAVRCLMD 430 (430)
Q Consensus 409 ~~~~~~~~~~~~l~~ai~~vl~ 430 (430)
-+.++++++|.++++
T Consensus 314 -------~d~~~l~~~i~~l~~ 328 (359)
T cd03823 314 -------GDAEDLAAALERLID 328 (359)
T ss_pred -------CCHHHHHHHHHHHHh
Confidence 368999999988763
No 47
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=98.76 E-value=5.3e-06 Score=79.36 Aligned_cols=131 Identities=19% Similarity=0.105 Sum_probs=77.1
Q ss_pred CcEEEEeecCCc-cCCHHHHHHHHHHHHhC-CCcEEEEEecCCCCCccccccccCCCCCCChhHHHhhcCceEEEeccch
Q 043290 271 SSVVFLCFGSSG-SFDVAQVKEIAIGLERS-GYNFLWSLRVSCPKDEASAHRYVTNNGVFPEGFLERIKGRGMICGWVPQ 348 (430)
Q Consensus 271 ~~vVyvsfGS~~-~~~~~~~~~~~~al~~~-~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~pq 348 (430)
++.+++..|+.. .-..+.+.++++.+.+. +.++++. |.+... ..+..-......+|+.+.+++|+
T Consensus 219 ~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~i~-G~~~~~------------~~~~~~~~~~~~~~v~~~g~~~~ 285 (394)
T cd03794 219 DKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFLIV-GDGPEK------------EELKELAKALGLDNVTFLGRVPK 285 (394)
T ss_pred CcEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEEEe-CCcccH------------HHHHHHHHHcCCCcEEEeCCCCh
Confidence 456777788765 33334444444544443 5555543 332100 00100001122357888899987
Q ss_pred hh---hhccCceeEEEeccC---------chhHHHHHHhCCceeecccccccchhHHHHhhhhceeEEeecccccCCccc
Q 043290 349 VE---ILAHKAIGGFVSHCG---------WNSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDLRLDYRVGSDLV 416 (430)
Q Consensus 349 ~~---iL~~~~~~~~itHgG---------~~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~~~~~~~~~~ 416 (430)
.+ ++..+++ +|.... -+++.||+++|+|+|+.+..+.+... .+. +.|..++. -
T Consensus 286 ~~~~~~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~~----~~~-~~g~~~~~--------~ 350 (394)
T cd03794 286 EELPELLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAELV----EEA-GAGLVVPP--------G 350 (394)
T ss_pred HHHHHHHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchhhh----ccC-CcceEeCC--------C
Confidence 76 5778888 553222 23479999999999998876654433 232 56665553 3
Q ss_pred CHhHHHHHHHHhh
Q 043290 417 MACDIESAVRCLM 429 (430)
Q Consensus 417 ~~~~l~~ai~~vl 429 (430)
+.++++++|.+++
T Consensus 351 ~~~~l~~~i~~~~ 363 (394)
T cd03794 351 DPEALAAAILELL 363 (394)
T ss_pred CHHHHHHHHHHHH
Confidence 7888999998876
No 48
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=98.73 E-value=1.3e-05 Score=79.28 Aligned_cols=125 Identities=14% Similarity=0.099 Sum_probs=76.5
Q ss_pred cEEEEeecCCccCCHHHHHHHHHHHHhC-CCcEEEEEecCCCCCccccccccCCCCCCChhHHHhh-cCceEEEeccchh
Q 043290 272 SVVFLCFGSSGSFDVAQVKEIAIGLERS-GYNFLWSLRVSCPKDEASAHRYVTNNGVFPEGFLERI-KGRGMICGWVPQV 349 (430)
Q Consensus 272 ~vVyvsfGS~~~~~~~~~~~~~~al~~~-~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~pq~ 349 (430)
..+++..|+.. ....+..+++++++. +.+++++ |.+. ..+.+.+.. ..++.+.+++|+.
T Consensus 263 ~~~i~~vGrl~--~~K~~~~li~a~~~~~~~~l~iv-G~G~----------------~~~~l~~~~~~~~V~f~G~v~~~ 323 (465)
T PLN02871 263 KPLIVYVGRLG--AEKNLDFLKRVMERLPGARLAFV-GDGP----------------YREELEKMFAGTPTVFTGMLQGD 323 (465)
T ss_pred CeEEEEeCCCc--hhhhHHHHHHHHHhCCCcEEEEE-eCCh----------------HHHHHHHHhccCCeEEeccCCHH
Confidence 34555567653 223355677777764 5565554 3321 011222111 2478888999876
Q ss_pred h---hhccCceeEEEeccC----chhHHHHHHhCCceeecccccccchhHHHHhh---hhceeEEeecccccCCcccCHh
Q 043290 350 E---ILAHKAIGGFVSHCG----WNSILESLWYGVPIATWPIYAEQQLNAFRMVK---EQGLALDLRLDYRVGSDLVMAC 419 (430)
Q Consensus 350 ~---iL~~~~~~~~itHgG----~~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~---~~G~G~~~~~~~~~~~~~~~~~ 419 (430)
+ ++..+++ ||.-.. .+++.||+++|+|+|+....+ ....+.+ . +.|..++. -+.+
T Consensus 324 ev~~~~~~aDv--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~gg----~~eiv~~~~~~-~~G~lv~~--------~d~~ 388 (465)
T PLN02871 324 ELSQAYASGDV--FVMPSESETLGFVVLEAMASGVPVVAARAGG----IPDIIPPDQEG-KTGFLYTP--------GDVD 388 (465)
T ss_pred HHHHHHHHCCE--EEECCcccccCcHHHHHHHcCCCEEEcCCCC----cHhhhhcCCCC-CceEEeCC--------CCHH
Confidence 5 6778888 764322 347899999999999876432 2333333 4 67777664 3678
Q ss_pred HHHHHHHHhhC
Q 043290 420 DIESAVRCLMD 430 (430)
Q Consensus 420 ~l~~ai~~vl~ 430 (430)
+++++|.++++
T Consensus 389 ~la~~i~~ll~ 399 (465)
T PLN02871 389 DCVEKLETLLA 399 (465)
T ss_pred HHHHHHHHHHh
Confidence 89999988763
No 49
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=98.68 E-value=2.1e-05 Score=75.76 Aligned_cols=79 Identities=16% Similarity=0.024 Sum_probs=57.3
Q ss_pred eEEEecc-chhhhhccCceeEEEeccCchhHHHHHHhCCceeecccccccchhHHHHhhh---hceeEEeecccccCCcc
Q 043290 340 GMICGWV-PQVEILAHKAIGGFVSHCGWNSILESLWYGVPIATWPIYAEQQLNAFRMVKE---QGLALDLRLDYRVGSDL 415 (430)
Q Consensus 340 ~~v~~~~-pq~~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~---~G~G~~~~~~~~~~~~~ 415 (430)
+.+..+. .-.++++.+++ +|+-.|..| .|+...|+|+|++|.-..|. |+...++. .|.++.+. .
T Consensus 281 ~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~~~~~~~~l~g~~~~l~--------~ 348 (396)
T TIGR03492 281 LEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYGFAEAQSRLLGGSVFLA--------S 348 (396)
T ss_pred eEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHHHHHhhHhhcCCEEecC--------C
Confidence 4554443 45789999998 999999766 99999999999999766675 87654431 15555544 2
Q ss_pred cCHhHHHHHHHHhhC
Q 043290 416 VMACDIESAVRCLMD 430 (430)
Q Consensus 416 ~~~~~l~~ai~~vl~ 430 (430)
.+.+.|.+++.++++
T Consensus 349 ~~~~~l~~~l~~ll~ 363 (396)
T TIGR03492 349 KNPEQAAQVVRQLLA 363 (396)
T ss_pred CCHHHHHHHHHHHHc
Confidence 345888888888763
No 50
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=98.67 E-value=2.7e-05 Score=75.83 Aligned_cols=60 Identities=23% Similarity=0.235 Sum_probs=43.1
Q ss_pred CCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecCCCCChhhHHhhhhccCCCCCeEEEeCCC
Q 043290 2 KKAELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMKLAVAPWVDAYAKSLTDSQPRICIIDLPP 70 (430)
Q Consensus 2 ~~~~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 70 (430)
|++||++++....|+-.=+..+|+.|+++||+ |++++....... .+ .....++.++.+..
T Consensus 2 ~~~~~~~~~~~~~~~~~R~~~~a~~L~~~G~~--V~ii~~~~~~~~-----~~--~~~~~~v~~~~~~~ 61 (415)
T cd03816 2 KRKRVCVLVLGDIGRSPRMQYHALSLAKHGWK--VDLVGYLETPPH-----DE--ILSNPNITIHPLPP 61 (415)
T ss_pred CccEEEEEEecccCCCHHHHHHHHHHHhcCce--EEEEEecCCCCC-----HH--HhcCCCEEEEECCC
Confidence 56789999999888888889999999999999 888885421110 01 01245688777753
No 51
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.63 E-value=5.3e-06 Score=72.58 Aligned_cols=115 Identities=18% Similarity=0.223 Sum_probs=81.6
Q ss_pred CcEEEEeecCCccCCHHHHHHHHHHHHhCCCcEEEEEecCCCCCccccccccCCCCCCChhHHHhh--cCceEEE-eccc
Q 043290 271 SSVVFLCFGSSGSFDVAQVKEIAIGLERSGYNFLWSLRVSCPKDEASAHRYVTNNGVFPEGFLERI--KGRGMIC-GWVP 347 (430)
Q Consensus 271 ~~vVyvsfGS~~~~~~~~~~~~~~al~~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~-~~~p 347 (430)
..-|+|+||- +.+....-+++..|.+..+.+=.++|+..+. + ..+..+. .+|.... .-=.
T Consensus 158 ~r~ilI~lGG--sDpk~lt~kvl~~L~~~~~nl~iV~gs~~p~--------------l-~~l~k~~~~~~~i~~~~~~~d 220 (318)
T COG3980 158 KRDILITLGG--SDPKNLTLKVLAELEQKNVNLHIVVGSSNPT--------------L-KNLRKRAEKYPNINLYIDTND 220 (318)
T ss_pred hheEEEEccC--CChhhhHHHHHHHhhccCeeEEEEecCCCcc--------------h-hHHHHHHhhCCCeeeEecchh
Confidence 3469999985 3333455678888888887777777754221 1 2222222 2344444 3333
Q ss_pred hhhhhccCceeEEEeccCchhHHHHHHhCCceeecccccccchhHHHHhhhhceeEEee
Q 043290 348 QVEILAHKAIGGFVSHCGWNSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDLR 406 (430)
Q Consensus 348 q~~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~ 406 (430)
-..++..++. .|+-+|. |+.|++.-|+|.+++|+..-|-..|...+.. |+-..+.
T Consensus 221 ma~LMke~d~--aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~l-g~~~~l~ 275 (318)
T COG3980 221 MAELMKEADL--AISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEFEAL-GIIKQLG 275 (318)
T ss_pred HHHHHHhcch--heeccch-HHHHHHHhcCCceEEeeeccHHHHHHHHHhc-Cchhhcc
Confidence 6678999998 9999887 9999999999999999999999999998875 7765544
No 52
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=98.61 E-value=0.00014 Score=68.59 Aligned_cols=79 Identities=18% Similarity=0.158 Sum_probs=57.5
Q ss_pred hcCceEEEeccchhh---hhccCceeEEEe----ccCchhHHHHHHhCCceeecccccccchhHHHHhhhhceeEEeecc
Q 043290 336 IKGRGMICGWVPQVE---ILAHKAIGGFVS----HCGWNSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDLRLD 408 (430)
Q Consensus 336 ~~~~~~v~~~~pq~~---iL~~~~~~~~it----HgG~~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~~ 408 (430)
..+++.+.+++++.+ ++..+++ +|. -|..+++.||+++|+|+|+.+. ......+.+. +.|..++
T Consensus 254 ~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~~-~~g~~~~-- 324 (374)
T cd03801 254 LGDRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVEDG-ETGLLVP-- 324 (374)
T ss_pred CCcceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhcCC-cceEEeC--
Confidence 346888899998655 5778887 552 3556789999999999998765 3455555544 6777665
Q ss_pred cccCCcccCHhHHHHHHHHhh
Q 043290 409 YRVGSDLVMACDIESAVRCLM 429 (430)
Q Consensus 409 ~~~~~~~~~~~~l~~ai~~vl 429 (430)
..+.+++.++|.+++
T Consensus 325 ------~~~~~~l~~~i~~~~ 339 (374)
T cd03801 325 ------PGDPEALAEAILRLL 339 (374)
T ss_pred ------CCCHHHHHHHHHHHH
Confidence 346889999988875
No 53
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=98.60 E-value=0.00023 Score=68.93 Aligned_cols=80 Identities=18% Similarity=0.127 Sum_probs=55.9
Q ss_pred CceEEEeccchhh---hhccCceeEEEe-ccCc-hhHHHHHHhCCceeecccccccchhHHHHhhhhceeEEeecccccC
Q 043290 338 GRGMICGWVPQVE---ILAHKAIGGFVS-HCGW-NSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDLRLDYRVG 412 (430)
Q Consensus 338 ~~~~v~~~~pq~~---iL~~~~~~~~it-HgG~-~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~~~~~~ 412 (430)
+++.+.+++|+.+ ++..+++-++.+ +.|. .++.||+++|+|+|+... ......+.+. ..|..++.
T Consensus 281 ~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas~~----~g~~e~i~~~-~~G~lv~~----- 350 (396)
T cd03818 281 SRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGSDT----APVREVITDG-ENGLLVDF----- 350 (396)
T ss_pred ceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEcCC----CCchhhcccC-CceEEcCC-----
Confidence 5788899999876 566788733323 2332 489999999999998643 3455555443 56776653
Q ss_pred CcccCHhHHHHHHHHhhC
Q 043290 413 SDLVMACDIESAVRCLMD 430 (430)
Q Consensus 413 ~~~~~~~~l~~ai~~vl~ 430 (430)
-++++++++|.++++
T Consensus 351 ---~d~~~la~~i~~ll~ 365 (396)
T cd03818 351 ---FDPDALAAAVIELLD 365 (396)
T ss_pred ---CCHHHHHHHHHHHHh
Confidence 478999999988763
No 54
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=98.58 E-value=5.2e-05 Score=72.05 Aligned_cols=77 Identities=17% Similarity=0.164 Sum_probs=54.6
Q ss_pred cCceEEEeccchhh---hhccCceeEEEec----cCchhHHHHHHhCCceeecccccccchhHHHHhhhhceeEEeeccc
Q 043290 337 KGRGMICGWVPQVE---ILAHKAIGGFVSH----CGWNSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDLRLDY 409 (430)
Q Consensus 337 ~~~~~v~~~~pq~~---iL~~~~~~~~itH----gG~~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~~~ 409 (430)
.+++.+.+++|+.+ ++.++++ +|.- +..+++.||+++|+|+|+... ...+..+.+. +.|..++.+
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~----~~~~~~i~~~-~~g~~~~~~- 329 (374)
T cd03817 258 ADRVIFTGFVPREELPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVDA----PGLPDLVADG-ENGFLFPPG- 329 (374)
T ss_pred CCcEEEeccCChHHHHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeCC----CChhhheecC-ceeEEeCCC-
Confidence 45888899999876 5778888 5533 334689999999999998654 3455555554 677766532
Q ss_pred ccCCcccCHhHHHHHHHHhh
Q 043290 410 RVGSDLVMACDIESAVRCLM 429 (430)
Q Consensus 410 ~~~~~~~~~~~l~~ai~~vl 429 (430)
+. ++.++|.+++
T Consensus 330 -------~~-~~~~~i~~l~ 341 (374)
T cd03817 330 -------DE-ALAEALLRLL 341 (374)
T ss_pred -------CH-HHHHHHHHHH
Confidence 22 7888887775
No 55
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.54 E-value=5.5e-05 Score=72.40 Aligned_cols=78 Identities=13% Similarity=0.044 Sum_probs=53.3
Q ss_pred cCceEEEeccc-hhhhhccCceeEEEe----ccCchhHHHHHHhCCceeecccccccchhHHHHhhhhceeEEeeccccc
Q 043290 337 KGRGMICGWVP-QVEILAHKAIGGFVS----HCGWNSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDLRLDYRV 411 (430)
Q Consensus 337 ~~~~~v~~~~p-q~~iL~~~~~~~~it----HgG~~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~~~~~ 411 (430)
.+++.+.++.+ -..++..+++ +|. -|...++.||+++|+|+|+... ...+..+.+. ..|..++.
T Consensus 252 ~~~v~~~g~~~~~~~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s~~----~~~~e~i~~~-~~G~~~~~---- 320 (371)
T cd04962 252 QDDVLFLGKQDHVEELLSIADL--FLLPSEKESFGLAALEAMACGVPVVASNA----GGIPEVVKHG-ETGFLVDV---- 320 (371)
T ss_pred CceEEEecCcccHHHHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEeCC----CCchhhhcCC-CceEEcCC----
Confidence 35677777765 3567888888 552 2334599999999999999644 3455555553 56765553
Q ss_pred CCcccCHhHHHHHHHHhh
Q 043290 412 GSDLVMACDIESAVRCLM 429 (430)
Q Consensus 412 ~~~~~~~~~l~~ai~~vl 429 (430)
-+.++++++|.+++
T Consensus 321 ----~~~~~l~~~i~~l~ 334 (371)
T cd04962 321 ----GDVEAMAEYALSLL 334 (371)
T ss_pred ----CCHHHHHHHHHHHH
Confidence 36788888887765
No 56
>PRK10307 putative glycosyl transferase; Provisional
Probab=98.50 E-value=0.0002 Score=69.69 Aligned_cols=79 Identities=10% Similarity=0.021 Sum_probs=53.7
Q ss_pred CceEEEeccchhh---hhccCceeEEEeccCc------hhHHHHHHhCCceeecccccccchhHHHHhhhhceeEEeecc
Q 043290 338 GRGMICGWVPQVE---ILAHKAIGGFVSHCGW------NSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDLRLD 408 (430)
Q Consensus 338 ~~~~v~~~~pq~~---iL~~~~~~~~itHgG~------~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~~ 408 (430)
+|+.+.+|+|+.+ ++..+++.++.+..+. +.+.|++++|+|+|+....+.. ....+ + +.|+.++.
T Consensus 284 ~~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~--~~~~i-~--~~G~~~~~- 357 (412)
T PRK10307 284 PNVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTE--LGQLV-E--GIGVCVEP- 357 (412)
T ss_pred CceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCch--HHHHH-h--CCcEEeCC-
Confidence 4788889999765 6888888555555332 2368999999999998754311 11122 2 55766653
Q ss_pred cccCCcccCHhHHHHHHHHhh
Q 043290 409 YRVGSDLVMACDIESAVRCLM 429 (430)
Q Consensus 409 ~~~~~~~~~~~~l~~ai~~vl 429 (430)
-+.++++++|.+++
T Consensus 358 -------~d~~~la~~i~~l~ 371 (412)
T PRK10307 358 -------ESVEALVAAIAALA 371 (412)
T ss_pred -------CCHHHHHHHHHHHH
Confidence 37889999998875
No 57
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.49 E-value=0.00025 Score=69.41 Aligned_cols=79 Identities=22% Similarity=0.185 Sum_probs=54.5
Q ss_pred ceEEEeccc-hhhhhccCceeEEEec-----cCchhHHHHHHhCCceeecccccccchhHHHHhhhhceeEEeecccccC
Q 043290 339 RGMICGWVP-QVEILAHKAIGGFVSH-----CGWNSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDLRLDYRVG 412 (430)
Q Consensus 339 ~~~v~~~~p-q~~iL~~~~~~~~itH-----gG~~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~~~~~~ 412 (430)
++.+.+... -..+++.+++ ++.. +|..+++||+++|+|+|+-|..+++......+.+. |.++..
T Consensus 303 ~v~l~~~~~el~~~y~~aDi--~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~-g~~~~~------- 372 (425)
T PRK05749 303 DVLLGDTMGELGLLYAIADI--AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQA-GAAIQV------- 372 (425)
T ss_pred cEEEEecHHHHHHHHHhCCE--EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHC-CCeEEE-------
Confidence 344444332 2456777886 3331 34446999999999999999988888887776665 766542
Q ss_pred CcccCHhHHHHHHHHhhC
Q 043290 413 SDLVMACDIESAVRCLMD 430 (430)
Q Consensus 413 ~~~~~~~~l~~ai~~vl~ 430 (430)
-++++++++|.++++
T Consensus 373 ---~d~~~La~~l~~ll~ 387 (425)
T PRK05749 373 ---EDAEDLAKAVTYLLT 387 (425)
T ss_pred ---CCHHHHHHHHHHHhc
Confidence 267888888887763
No 58
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.49 E-value=3.1e-05 Score=74.00 Aligned_cols=132 Identities=13% Similarity=0.095 Sum_probs=80.5
Q ss_pred CCcEEEEeecCCccC-CHHHHHHHHHHHHhCCCc-EEEEEecCCCCCccccccccCCCCCCChhHHHhh---cCceEEEe
Q 043290 270 ESSVVFLCFGSSGSF-DVAQVKEIAIGLERSGYN-FLWSLRVSCPKDEASAHRYVTNNGVFPEGFLERI---KGRGMICG 344 (430)
Q Consensus 270 ~~~vVyvsfGS~~~~-~~~~~~~~~~al~~~~~~-~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~ 344 (430)
+++.|++++|..... ..+.+..+++++++...+ +++....... . ...+.. ..++. .+++.+.+
T Consensus 197 ~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~-~----------~~~l~~-~~~~~~~~~~~v~~~~ 264 (363)
T cd03786 197 PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPR-T----------RPRIRE-AGLEFLGHHPNVLLIS 264 (363)
T ss_pred CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCC-h----------HHHHHH-HHHhhccCCCCEEEEC
Confidence 356788888876543 456677888888765332 3333322210 0 011111 11111 35777776
Q ss_pred ccchh---hhhccCceeEEEeccCchhHHHHHHhCCceeecccccccchhHHHHhhhhceeEEeecccccCCcccCHhHH
Q 043290 345 WVPQV---EILAHKAIGGFVSHCGWNSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDLRLDYRVGSDLVMACDI 421 (430)
Q Consensus 345 ~~pq~---~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~~~~~~~~~~~~~~l 421 (430)
..++. .++..+++ +|+..| |.+.||++.|+|+|+++.. |. +..+.+. |++..+. -+.++|
T Consensus 265 ~~~~~~~~~l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~~~~-g~~~~~~---------~~~~~i 327 (363)
T cd03786 265 PLGYLYFLLLLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPETVES-GTNVLVG---------TDPEAI 327 (363)
T ss_pred CcCHHHHHHHHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchhhhe-eeEEecC---------CCHHHH
Confidence 66554 45777888 999999 7788999999999998743 22 2233454 7665432 157889
Q ss_pred HHHHHHhhC
Q 043290 422 ESAVRCLMD 430 (430)
Q Consensus 422 ~~ai~~vl~ 430 (430)
.++|+++++
T Consensus 328 ~~~i~~ll~ 336 (363)
T cd03786 328 LAAIEKLLS 336 (363)
T ss_pred HHHHHHHhc
Confidence 999988763
No 59
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.47 E-value=0.00031 Score=68.22 Aligned_cols=77 Identities=12% Similarity=0.039 Sum_probs=54.5
Q ss_pred CceEEEeccchh---hhhccCceeEEEe---ccCc-hhHHHHHHhCCceeecccccccchhHHHHhhhhceeEEeecccc
Q 043290 338 GRGMICGWVPQV---EILAHKAIGGFVS---HCGW-NSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDLRLDYR 410 (430)
Q Consensus 338 ~~~~v~~~~pq~---~iL~~~~~~~~it---HgG~-~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~~~~ 410 (430)
+++.+.+++|+. .++..+++ +|. +-|+ .++.||+++|+|+|+.... .....+.+. +.|..++.
T Consensus 283 ~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~----~~~e~i~~~-~~g~~~~~--- 352 (405)
T TIGR03449 283 DRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARVG----GLPVAVADG-ETGLLVDG--- 352 (405)
T ss_pred ceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecCC----CcHhhhccC-CceEECCC---
Confidence 578888999875 46888888 553 2333 5899999999999986643 334444443 56766553
Q ss_pred cCCcccCHhHHHHHHHHhh
Q 043290 411 VGSDLVMACDIESAVRCLM 429 (430)
Q Consensus 411 ~~~~~~~~~~l~~ai~~vl 429 (430)
-+.++++++|.+++
T Consensus 353 -----~d~~~la~~i~~~l 366 (405)
T TIGR03449 353 -----HDPADWADALARLL 366 (405)
T ss_pred -----CCHHHHHHHHHHHH
Confidence 37788888888775
No 60
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.46 E-value=0.00072 Score=64.00 Aligned_cols=81 Identities=15% Similarity=0.025 Sum_probs=56.7
Q ss_pred cCceEEEeccchh---hhhccCceeEEE--eccCchhHHHHHHhCCceeecccccccchhHHHHhhhhceeEEeeccccc
Q 043290 337 KGRGMICGWVPQV---EILAHKAIGGFV--SHCGWNSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDLRLDYRV 411 (430)
Q Consensus 337 ~~~~~v~~~~pq~---~iL~~~~~~~~i--tHgG~~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~~~~~ 411 (430)
.+++.+.+++++. .++..+++.++. +-|..+++.||+++|+|+|+-+.. .....+.+. +.|...+
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~----~~~~~~~~~-~~g~~~~----- 327 (377)
T cd03798 258 EDRVTFLGAVPHEEVPAYYAAADVFVLPSLREGFGLVLLEAMACGLPVVATDVG----GIPEIITDG-ENGLLVP----- 327 (377)
T ss_pred cceEEEeCCCCHHHHHHHHHhcCeeecchhhccCChHHHHHHhcCCCEEEecCC----ChHHHhcCC-cceeEEC-----
Confidence 4578888999975 557778872222 234567899999999999986653 344445554 6666555
Q ss_pred CCcccCHhHHHHHHHHhhC
Q 043290 412 GSDLVMACDIESAVRCLMD 430 (430)
Q Consensus 412 ~~~~~~~~~l~~ai~~vl~ 430 (430)
.-+.+++.++|.++++
T Consensus 328 ---~~~~~~l~~~i~~~~~ 343 (377)
T cd03798 328 ---PGDPEALAEAILRLLA 343 (377)
T ss_pred ---CCCHHHHHHHHHHHhc
Confidence 3478889999988763
No 61
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=98.46 E-value=0.00041 Score=65.30 Aligned_cols=131 Identities=18% Similarity=0.119 Sum_probs=75.5
Q ss_pred CcEEEEeecCCc-cCCHHHHHHHHHHHHh--CCCcEEEEEecCCCCCccccccccCCCCCCChhHHHh--hcCceEEEec
Q 043290 271 SSVVFLCFGSSG-SFDVAQVKEIAIGLER--SGYNFLWSLRVSCPKDEASAHRYVTNNGVFPEGFLER--IKGRGMICGW 345 (430)
Q Consensus 271 ~~vVyvsfGS~~-~~~~~~~~~~~~al~~--~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~ 345 (430)
++.+++..|++. .-..+.+.++++.+.+ .+.++++. |..... .......... ...++.+.++
T Consensus 187 ~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~-G~~~~~------------~~~~~~~~~~~~~~~~v~~~g~ 253 (359)
T cd03808 187 DDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLV-GDGDEE------------NPAAILEIEKLGLEGRVEFLGF 253 (359)
T ss_pred CCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEE-cCCCcc------------hhhHHHHHHhcCCcceEEEeec
Confidence 457777888865 3333445555555543 34455544 332110 0000000111 2346777776
Q ss_pred cc-hhhhhccCceeEEEecc----CchhHHHHHHhCCceeecccccccchhHHHHhhhhceeEEeecccccCCcccCHhH
Q 043290 346 VP-QVEILAHKAIGGFVSHC----GWNSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDLRLDYRVGSDLVMACD 420 (430)
Q Consensus 346 ~p-q~~iL~~~~~~~~itHg----G~~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~~~~~~~~~~~~~~ 420 (430)
.. -..++..+++ +|.-. -.+++.||+++|+|+|+....+ ....+.+. +.|..++. -+.++
T Consensus 254 ~~~~~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~----~~~~i~~~-~~g~~~~~--------~~~~~ 318 (359)
T cd03808 254 RDDVPELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVPG----CREAVIDG-VNGFLVPP--------GDAEA 318 (359)
T ss_pred cccHHHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecCCC----chhhhhcC-cceEEECC--------CCHHH
Confidence 33 4567888888 66433 2578999999999999965433 34444444 67776553 36888
Q ss_pred HHHHHHHhh
Q 043290 421 IESAVRCLM 429 (430)
Q Consensus 421 l~~ai~~vl 429 (430)
+.++|.+++
T Consensus 319 ~~~~i~~l~ 327 (359)
T cd03808 319 LADAIERLI 327 (359)
T ss_pred HHHHHHHHH
Confidence 999888765
No 62
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.43 E-value=0.00015 Score=68.83 Aligned_cols=128 Identities=15% Similarity=0.132 Sum_probs=78.9
Q ss_pred cEEEEeecCCccCCHHHHHHHHHHHHhCC-CcEEEEEecCCCCCccccccccCCCCCCChhHHH-----hhcCceEEEec
Q 043290 272 SVVFLCFGSSGSFDVAQVKEIAIGLERSG-YNFLWSLRVSCPKDEASAHRYVTNNGVFPEGFLE-----RIKGRGMICGW 345 (430)
Q Consensus 272 ~vVyvsfGS~~~~~~~~~~~~~~al~~~~-~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~ 345 (430)
..+++..|++. .......+++++++.. .++++. |.+ . ....+.+ ....|+.+.+|
T Consensus 191 ~~~i~~~G~~~--~~K~~~~li~a~~~l~~~~l~i~-G~g-~---------------~~~~~~~~~~~~~~~~~V~~~g~ 251 (357)
T cd03795 191 RPFFLFVGRLV--YYKGLDVLLEAAAALPDAPLVIV-GEG-P---------------LEAELEALAAALGLLDRVRFLGR 251 (357)
T ss_pred CcEEEEecccc--cccCHHHHHHHHHhccCcEEEEE-eCC-h---------------hHHHHHHHHHhcCCcceEEEcCC
Confidence 45667778754 2234556777777665 444443 222 0 1111111 12468999999
Q ss_pred cchh---hhhccCceeEEEe---ccCch-hHHHHHHhCCceeecccccccchhHHHHhhhhceeEEeecccccCCcccCH
Q 043290 346 VPQV---EILAHKAIGGFVS---HCGWN-SILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDLRLDYRVGSDLVMA 418 (430)
Q Consensus 346 ~pq~---~iL~~~~~~~~it---HgG~~-s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~~~~~~~~~~~~ 418 (430)
+|+. .++..+++.++-+ +.|+| ++.||+++|+|+|+....+.+..... +. +.|.... .-+.
T Consensus 252 v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~---~~-~~g~~~~--------~~d~ 319 (357)
T cd03795 252 LDDEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNL---HG-VTGLVVP--------PGDP 319 (357)
T ss_pred CCHHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchhHHhh---CC-CceEEeC--------CCCH
Confidence 9985 4777788844433 23433 79999999999999766555443322 23 6676555 3478
Q ss_pred hHHHHHHHHhhC
Q 043290 419 CDIESAVRCLMD 430 (430)
Q Consensus 419 ~~l~~ai~~vl~ 430 (430)
++++++|.++++
T Consensus 320 ~~~~~~i~~l~~ 331 (357)
T cd03795 320 AALAEAIRRLLE 331 (357)
T ss_pred HHHHHHHHHHHH
Confidence 899999988763
No 63
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.40 E-value=0.0004 Score=65.90 Aligned_cols=78 Identities=18% Similarity=0.042 Sum_probs=52.3
Q ss_pred cCceEEEeccchhhh---hccCceeEEEec--cCchhHHHHHHhCCceeecccccccchhHHHHhhhhceeEEeeccccc
Q 043290 337 KGRGMICGWVPQVEI---LAHKAIGGFVSH--CGWNSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDLRLDYRV 411 (430)
Q Consensus 337 ~~~~~v~~~~pq~~i---L~~~~~~~~itH--gG~~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~~~~~ 411 (430)
.+++.+.+|++++++ +..+++-++-++ |-.+++.||+++|+|+|+.+.. .....+.+ +.|.....
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~----~~~~~~~~--~~~~~~~~---- 330 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTTDKV----PWQELIEY--GCGWVVDD---- 330 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCEEEcCCC----CHHHHhhc--CceEEeCC----
Confidence 467888899996654 778887322222 2246899999999999996543 33333333 66665442
Q ss_pred CCcccCHhHHHHHHHHhh
Q 043290 412 GSDLVMACDIESAVRCLM 429 (430)
Q Consensus 412 ~~~~~~~~~l~~ai~~vl 429 (430)
+.+++.++|.+++
T Consensus 331 -----~~~~~~~~i~~l~ 343 (375)
T cd03821 331 -----DVDALAAALRRAL 343 (375)
T ss_pred -----ChHHHHHHHHHHH
Confidence 3488888888875
No 64
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.40 E-value=0.00035 Score=68.67 Aligned_cols=78 Identities=17% Similarity=0.038 Sum_probs=53.8
Q ss_pred cCceEEEeccchhhh---hccC----ceeEEEecc---C-chhHHHHHHhCCceeecccccccchhHHHHhhhhceeEEe
Q 043290 337 KGRGMICGWVPQVEI---LAHK----AIGGFVSHC---G-WNSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDL 405 (430)
Q Consensus 337 ~~~~~v~~~~pq~~i---L~~~----~~~~~itHg---G-~~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~ 405 (430)
.+++.+.+++++.++ +..+ ++ ||.-. | -.+++||+++|+|+|+.... .....+.+. ..|..+
T Consensus 316 ~~~V~f~g~~~~~~~~~~~~~a~~~~Dv--~v~pS~~E~fg~~~lEAma~G~PvV~s~~g----g~~eiv~~~-~~G~lv 388 (439)
T TIGR02472 316 YGKVAYPKHHRPDDVPELYRLAARSRGI--FVNPALTEPFGLTLLEAAACGLPIVATDDG----GPRDIIANC-RNGLLV 388 (439)
T ss_pred CceEEecCCCCHHHHHHHHHHHhhcCCE--EecccccCCcccHHHHHHHhCCCEEEeCCC----CcHHHhcCC-CcEEEe
Confidence 467888888888776 5444 45 77643 3 35999999999999987653 233344443 457666
Q ss_pred ecccccCCcccCHhHHHHHHHHhh
Q 043290 406 RLDYRVGSDLVMACDIESAVRCLM 429 (430)
Q Consensus 406 ~~~~~~~~~~~~~~~l~~ai~~vl 429 (430)
+. -++++++++|.+++
T Consensus 389 ~~--------~d~~~la~~i~~ll 404 (439)
T TIGR02472 389 DV--------LDLEAIASALEDAL 404 (439)
T ss_pred CC--------CCHHHHHHHHHHHH
Confidence 53 37888999888775
No 65
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=98.40 E-value=0.00052 Score=65.33 Aligned_cols=78 Identities=14% Similarity=0.036 Sum_probs=53.5
Q ss_pred cCceEEEeccc-hh---hhhccCceeEEEecc----CchhHHHHHHhCCceeecccccccchhHHHHhhhhceeEEeecc
Q 043290 337 KGRGMICGWVP-QV---EILAHKAIGGFVSHC----GWNSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDLRLD 408 (430)
Q Consensus 337 ~~~~~v~~~~p-q~---~iL~~~~~~~~itHg----G~~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~~ 408 (430)
..++.+.+|++ +. .++..+++ ++.-. ..+++.||+++|+|+|+.... .....+.+. +.|..+.
T Consensus 243 ~~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~----~~~e~~~~~-~~g~~~~-- 313 (365)
T cd03825 243 PFPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDVG----GIPDIVDHG-VTGYLAK-- 313 (365)
T ss_pred CCceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecCC----CChhheeCC-CceEEeC--
Confidence 35778889998 44 46888888 66643 357999999999999986542 222333333 4666555
Q ss_pred cccCCcccCHhHHHHHHHHhh
Q 043290 409 YRVGSDLVMACDIESAVRCLM 429 (430)
Q Consensus 409 ~~~~~~~~~~~~l~~ai~~vl 429 (430)
..+.+++++++.+++
T Consensus 314 ------~~~~~~~~~~l~~l~ 328 (365)
T cd03825 314 ------PGDPEDLAEGIEWLL 328 (365)
T ss_pred ------CCCHHHHHHHHHHHH
Confidence 346788888888775
No 66
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.34 E-value=0.00045 Score=64.32 Aligned_cols=108 Identities=17% Similarity=0.157 Sum_probs=66.1
Q ss_pred CCcEEEEeecCCc----cCCHHHHHHHHHHHHhCCCcEEEEEecCCCCCccccccccCCCCCCChhHHHhhcCceEEE-e
Q 043290 270 ESSVVFLCFGSSG----SFDVAQVKEIAIGLERSGYNFLWSLRVSCPKDEASAHRYVTNNGVFPEGFLERIKGRGMIC-G 344 (430)
Q Consensus 270 ~~~vVyvsfGS~~----~~~~~~~~~~~~al~~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~ 344 (430)
+++.|+|=+-+.. ......+.++++.|++.+..+|...+...+ ++ +.+.- ++.+. .
T Consensus 178 ~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~~~~----------------~~-~~~~~--~~~i~~~ 238 (335)
T PF04007_consen 178 DEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNVVIIPRYEDQ----------------RE-LFEKY--GVIIPPE 238 (335)
T ss_pred CCCEEEEEeccccCeeecCccchHHHHHHHHHhhCceEEEecCCcch----------------hh-HHhcc--CccccCC
Confidence 3467777665532 334455778999999988875555433211 11 11111 23443 4
Q ss_pred ccchhhhhccCceeEEEeccCchhHHHHHHhCCceeecccccccchhHHHHhhhhce
Q 043290 345 WVPQVEILAHKAIGGFVSHCGWNSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGL 401 (430)
Q Consensus 345 ~~pq~~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~ 401 (430)
-+.-.++|.++++ +|+-|| ....||..-|+|.|-+ +-++-...-+.+.+. |+
T Consensus 239 ~vd~~~Ll~~a~l--~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~~~-Gl 290 (335)
T PF04007_consen 239 PVDGLDLLYYADL--VIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLIEK-GL 290 (335)
T ss_pred CCCHHHHHHhcCE--EEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHHHC-CC
Confidence 4555689999998 998877 7889999999999975 222322333445565 65
No 67
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.33 E-value=0.00051 Score=72.36 Aligned_cols=81 Identities=15% Similarity=0.018 Sum_probs=53.3
Q ss_pred cCceEEEeccchhhh---hccCc--eeEEEec---cCc-hhHHHHHHhCCceeecccccccchhHHHHhhhhceeEEeec
Q 043290 337 KGRGMICGWVPQVEI---LAHKA--IGGFVSH---CGW-NSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDLRL 407 (430)
Q Consensus 337 ~~~~~v~~~~pq~~i---L~~~~--~~~~itH---gG~-~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~ 407 (430)
.+++.+.+++++.++ +..++ ..+||.= =|+ .+++||+++|+|+|+....+ ....+... .-|+.++.
T Consensus 547 ~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII~~g-~nGlLVdP 621 (1050)
T TIGR02468 547 YGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIHRVL-DNGLLVDP 621 (1050)
T ss_pred CCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHhccC-CcEEEECC
Confidence 367888899888764 44442 1236653 233 48999999999999987543 22233332 45776653
Q ss_pred ccccCCcccCHhHHHHHHHHhhC
Q 043290 408 DYRVGSDLVMACDIESAVRCLMD 430 (430)
Q Consensus 408 ~~~~~~~~~~~~~l~~ai~~vl~ 430 (430)
-+.++|+++|.++++
T Consensus 622 --------~D~eaLA~AL~~LL~ 636 (1050)
T TIGR02468 622 --------HDQQAIADALLKLVA 636 (1050)
T ss_pred --------CCHHHHHHHHHHHhh
Confidence 478899999988763
No 68
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.33 E-value=4.4e-06 Score=65.70 Aligned_cols=112 Identities=24% Similarity=0.320 Sum_probs=74.5
Q ss_pred cEEEEeecCCccCC---HHHHHHHHHHHHhCCC-cEEEEEecCCCCCccccccccCCCCCCChhHHHhhc-CceEE--Ee
Q 043290 272 SVVFLCFGSSGSFD---VAQVKEIAIGLERSGY-NFLWSLRVSCPKDEASAHRYVTNNGVFPEGFLERIK-GRGMI--CG 344 (430)
Q Consensus 272 ~vVyvsfGS~~~~~---~~~~~~~~~al~~~~~-~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v--~~ 344 (430)
..+||+-||....+ .-.-++..+.|.+.|. +.|..+|.+.. ..++...+..+ +...| -+
T Consensus 4 ~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~--------------~~~d~~~~~~k~~gl~id~y~ 69 (170)
T KOG3349|consen 4 MTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQP--------------FFGDPIDLIRKNGGLTIDGYD 69 (170)
T ss_pred eEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCcc--------------CCCCHHHhhcccCCeEEEEEe
Confidence 58999999975211 1112346667777777 67777776621 11222211112 22222 26
Q ss_pred ccch-hhhhccCceeEEEeccCchhHHHHHHhCCceeeccc----ccccchhHHHHhhhhc
Q 043290 345 WVPQ-VEILAHKAIGGFVSHCGWNSILESLWYGVPIATWPI----YAEQQLNAFRMVKEQG 400 (430)
Q Consensus 345 ~~pq-~~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~P~----~~DQ~~~a~rv~~~~G 400 (430)
|-|- .+....+++ +|.|+|.||++|.|..|+|.|+++. ---|-.-|.++++. |
T Consensus 70 f~psl~e~I~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~e-g 127 (170)
T KOG3349|consen 70 FSPSLTEDIRSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEE-G 127 (170)
T ss_pred cCccHHHHHhhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhc-C
Confidence 7774 566666888 9999999999999999999999995 33588999998886 5
No 69
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.27 E-value=0.0011 Score=62.88 Aligned_cols=80 Identities=15% Similarity=0.062 Sum_probs=54.2
Q ss_pred cCceEEEeccchhh---hhccCceeEEEe--------ccCchhHHHHHHhCCceeecccccccchhHHHHhhhhceeEEe
Q 043290 337 KGRGMICGWVPQVE---ILAHKAIGGFVS--------HCGWNSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDL 405 (430)
Q Consensus 337 ~~~~~v~~~~pq~~---iL~~~~~~~~it--------HgG~~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~ 405 (430)
++++.+.+++|+.+ ++.++++.++-+ -|.-+++.||+++|+|+|+.+.. + ....+.+. ..|..+
T Consensus 235 ~~~v~~~g~~~~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~-~---~~~~i~~~-~~g~~~ 309 (355)
T cd03799 235 EDRVTLLGAKSQEEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVS-G---IPELVEDG-ETGLLV 309 (355)
T ss_pred CCeEEECCcCChHHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHcCCCEEecCCC-C---cchhhhCC-CceEEe
Confidence 46788899998665 556788733322 23357899999999999987653 2 22233332 477766
Q ss_pred ecccccCCcccCHhHHHHHHHHhh
Q 043290 406 RLDYRVGSDLVMACDIESAVRCLM 429 (430)
Q Consensus 406 ~~~~~~~~~~~~~~~l~~ai~~vl 429 (430)
+. -+.++++++|.+++
T Consensus 310 ~~--------~~~~~l~~~i~~~~ 325 (355)
T cd03799 310 PP--------GDPEALADAIERLL 325 (355)
T ss_pred CC--------CCHHHHHHHHHHHH
Confidence 53 37889999988775
No 70
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.27 E-value=0.0009 Score=63.49 Aligned_cols=78 Identities=17% Similarity=0.273 Sum_probs=53.2
Q ss_pred cCceEEE-eccchh---hhhccCceeEEE--ec----cCchhHHHHHHhCCceeecccccccchhHHHHhhhhceeEEee
Q 043290 337 KGRGMIC-GWVPQV---EILAHKAIGGFV--SH----CGWNSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDLR 406 (430)
Q Consensus 337 ~~~~~v~-~~~pq~---~iL~~~~~~~~i--tH----gG~~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~ 406 (430)
.+++.+. .|+|+. .++..+++ +| +. |-.+++.||+++|+|+|+.+..+ ...+... +.|..+.
T Consensus 246 ~~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~-~~g~~~~ 317 (366)
T cd03822 246 ADRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLDG-GTGLLVP 317 (366)
T ss_pred CCcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeeeC-CCcEEEc
Confidence 3577777 458864 56777887 55 22 33568899999999999987654 2233444 6676655
Q ss_pred cccccCCcccCHhHHHHHHHHhhC
Q 043290 407 LDYRVGSDLVMACDIESAVRCLMD 430 (430)
Q Consensus 407 ~~~~~~~~~~~~~~l~~ai~~vl~ 430 (430)
. -+.+++++++.++++
T Consensus 318 ~--------~d~~~~~~~l~~l~~ 333 (366)
T cd03822 318 P--------GDPAALAEAIRRLLA 333 (366)
T ss_pred C--------CCHHHHHHHHHHHHc
Confidence 3 368889988887763
No 71
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.25 E-value=0.00091 Score=64.56 Aligned_cols=77 Identities=10% Similarity=0.028 Sum_probs=53.3
Q ss_pred cCceEEEeccchh---hhhccCceeEEEec---cC-chhHHHHHHhCCceeecccccccchhHHHHhhhhceeEEeeccc
Q 043290 337 KGRGMICGWVPQV---EILAHKAIGGFVSH---CG-WNSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDLRLDY 409 (430)
Q Consensus 337 ~~~~~v~~~~pq~---~iL~~~~~~~~itH---gG-~~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~~~ 409 (430)
.+++.+.+++|+. .++..+++ ++.. -| ..+++||+++|+|+|+.-..+ ....+.+. +.|..++
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~~~----~~e~i~~~-~~g~~~~--- 348 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNSGG----PLETVVDG-ETGFLCE--- 348 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECCCC----cHHHhccC-CceEEeC---
Confidence 4689999999986 46788887 5532 22 257899999999999975433 33344443 5676543
Q ss_pred ccCCcccCHhHHHHHHHHhh
Q 043290 410 RVGSDLVMACDIESAVRCLM 429 (430)
Q Consensus 410 ~~~~~~~~~~~l~~ai~~vl 429 (430)
. +.++++++|.+++
T Consensus 349 -----~-~~~~~a~~i~~l~ 362 (392)
T cd03805 349 -----P-TPEEFAEAMLKLA 362 (392)
T ss_pred -----C-CHHHHHHHHHHHH
Confidence 2 6788888888765
No 72
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=98.24 E-value=0.0016 Score=60.98 Aligned_cols=78 Identities=21% Similarity=0.278 Sum_probs=52.7
Q ss_pred CceEEEec-cchhhhhccCceeEEEecc----CchhHHHHHHhCCceeecccccccchhHHHHhhhhc-eeEEeeccccc
Q 043290 338 GRGMICGW-VPQVEILAHKAIGGFVSHC----GWNSILESLWYGVPIATWPIYAEQQLNAFRMVKEQG-LALDLRLDYRV 411 (430)
Q Consensus 338 ~~~~v~~~-~pq~~iL~~~~~~~~itHg----G~~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G-~G~~~~~~~~~ 411 (430)
.++.+.++ -.-..++..+++ +|.-. .-+++.||+++|+|+|+.+..+.+. .+.+. | .|..++
T Consensus 235 ~~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~----~~~~~-~~~g~~~~----- 302 (348)
T cd03820 235 DRVILLGFTKNIEEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGPS----EIIED-GVNGLLVP----- 302 (348)
T ss_pred CeEEEcCCcchHHHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCchH----hhhcc-CcceEEeC-----
Confidence 45666666 234567888887 55443 2468999999999999876544333 23333 4 676665
Q ss_pred CCcccCHhHHHHHHHHhhC
Q 043290 412 GSDLVMACDIESAVRCLMD 430 (430)
Q Consensus 412 ~~~~~~~~~l~~ai~~vl~ 430 (430)
.-+.++++++|.++++
T Consensus 303 ---~~~~~~~~~~i~~ll~ 318 (348)
T cd03820 303 ---NGDVEALAEALLRLME 318 (348)
T ss_pred ---CCCHHHHHHHHHHHHc
Confidence 3467899999988763
No 73
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.23 E-value=0.0004 Score=65.28 Aligned_cols=126 Identities=14% Similarity=0.037 Sum_probs=73.6
Q ss_pred EEEeecCCccCCHHHHHHHHHHHHhCCCcEEEEEecCCCCCccccccccCCCCCCChhHHHh--hcCceEEEeccchhh-
Q 043290 274 VFLCFGSSGSFDVAQVKEIAIGLERSGYNFLWSLRVSCPKDEASAHRYVTNNGVFPEGFLER--IKGRGMICGWVPQVE- 350 (430)
Q Consensus 274 VyvsfGS~~~~~~~~~~~~~~al~~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~pq~~- 350 (430)
+.+..|... .......+++++++.+.++++.-.+... ..+-....+. ..+++.+.+++++.+
T Consensus 173 ~i~~~Gr~~--~~Kg~~~li~~~~~~~~~l~i~G~~~~~-------------~~~~~~~~~~~~~~~~v~~~G~~~~~~~ 237 (335)
T cd03802 173 YLLFLGRIS--PEKGPHLAIRAARRAGIPLKLAGPVSDP-------------DYFYREIAPELLDGPDIEYLGEVGGAEK 237 (335)
T ss_pred EEEEEEeec--cccCHHHHHHHHHhcCCeEEEEeCCCCH-------------HHHHHHHHHhcccCCcEEEeCCCCHHHH
Confidence 344456653 2233556778888888887765332210 0000011111 247899999999864
Q ss_pred --hhccCceeEEEe--ccCc-hhHHHHHHhCCceeecccccccchhHHHHhhhhceeEEeecccccCCcccCHhHHHHHH
Q 043290 351 --ILAHKAIGGFVS--HCGW-NSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDLRLDYRVGSDLVMACDIESAV 425 (430)
Q Consensus 351 --iL~~~~~~~~it--HgG~-~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~~~~~~~~~~~~~~l~~ai 425 (430)
+++.+++-++-+ +-|+ .++.||+++|+|+|+.... .....+.+. ..|..++ . .++++++|
T Consensus 238 ~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~----~~~e~i~~~-~~g~l~~--------~--~~~l~~~l 302 (335)
T cd03802 238 AELLGNARALLFPILWEEPFGLVMIEAMACGTPVIAFRRG----AVPEVVEDG-VTGFLVD--------S--VEELAAAV 302 (335)
T ss_pred HHHHHhCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCC----CchhheeCC-CcEEEeC--------C--HHHHHHHH
Confidence 578888833333 2343 4899999999999987653 233333332 2565433 2 77888888
Q ss_pred HHhh
Q 043290 426 RCLM 429 (430)
Q Consensus 426 ~~vl 429 (430)
++++
T Consensus 303 ~~l~ 306 (335)
T cd03802 303 ARAD 306 (335)
T ss_pred HHHh
Confidence 7653
No 74
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.15 E-value=0.0012 Score=64.02 Aligned_cols=76 Identities=16% Similarity=0.148 Sum_probs=50.6
Q ss_pred cCceEEEeccchhh---hhccCceeEEEe---ccCch-hHHHHHHhCCceeecccccccchhHHHHhhhhceeEEeeccc
Q 043290 337 KGRGMICGWVPQVE---ILAHKAIGGFVS---HCGWN-SILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDLRLDY 409 (430)
Q Consensus 337 ~~~~~v~~~~pq~~---iL~~~~~~~~it---HgG~~-s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~~~ 409 (430)
.+++.+.+|+|+++ +++.+++ +|. +-|+| ++.||+++|+|+|+....+ ....+.+ |-+.. .
T Consensus 249 ~~~v~~~G~~~~~~~~~~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i~~--~~~~~-~--- 316 (398)
T cd03796 249 QDRVELLGAVPHERVRDVLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVLPP--DMILL-A--- 316 (398)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhheeC--Cceee-c---
Confidence 35788899998755 6677887 553 33444 9999999999999977643 2223333 33322 2
Q ss_pred ccCCcccCHhHHHHHHHHhh
Q 043290 410 RVGSDLVMACDIESAVRCLM 429 (430)
Q Consensus 410 ~~~~~~~~~~~l~~ai~~vl 429 (430)
..+.+++++++.+++
T Consensus 317 -----~~~~~~l~~~l~~~l 331 (398)
T cd03796 317 -----EPDVESIVRKLEEAI 331 (398)
T ss_pred -----CCCHHHHHHHHHHHH
Confidence 226788888888765
No 75
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.15 E-value=0.00072 Score=64.71 Aligned_cols=125 Identities=12% Similarity=0.131 Sum_probs=76.0
Q ss_pred cEEEEeecCCccCCHHHHHHHHHHHHhC-----CCcEEEEEecCCCCCccccccccCCCCCCChhHHHh--hcCceEEEe
Q 043290 272 SVVFLCFGSSGSFDVAQVKEIAIGLERS-----GYNFLWSLRVSCPKDEASAHRYVTNNGVFPEGFLER--IKGRGMICG 344 (430)
Q Consensus 272 ~vVyvsfGS~~~~~~~~~~~~~~al~~~-----~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~ 344 (430)
..|+++.+-..... +.+..++++++++ +.++++..+.+.. .-..+.+. ..+++.+.+
T Consensus 198 ~~vl~~~hr~~~~~-k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~---------------~~~~~~~~~~~~~~v~~~~ 261 (365)
T TIGR00236 198 RYILLTLHRRENVG-EPLENIFKAIREIVEEFEDVQIVYPVHLNPV---------------VREPLHKHLGDSKRVHLIE 261 (365)
T ss_pred CEEEEecCchhhhh-hHHHHHHHHHHHHHHHCCCCEEEEECCCChH---------------HHHHHHHHhCCCCCEEEEC
Confidence 45666554322221 3466677777653 5666665433210 00111111 235788887
Q ss_pred ccchh---hhhccCceeEEEeccCchhHHHHHHhCCceeecccccccchhHHHHhhhhceeEEeecccccCCcccCHhHH
Q 043290 345 WVPQV---EILAHKAIGGFVSHCGWNSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDLRLDYRVGSDLVMACDI 421 (430)
Q Consensus 345 ~~pq~---~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~~~~~~~~~~~~~~l 421 (430)
.+++. .++.++++ +|+-.|. .+.||+++|+|+|+.+..++++. +.+. |.+..+. -++++|
T Consensus 262 ~~~~~~~~~~l~~ad~--vv~~Sg~-~~~EA~a~g~PvI~~~~~~~~~e----~~~~-g~~~lv~---------~d~~~i 324 (365)
T TIGR00236 262 PLEYLDFLNLAANSHL--ILTDSGG-VQEEAPSLGKPVLVLRDTTERPE----TVEA-GTNKLVG---------TDKENI 324 (365)
T ss_pred CCChHHHHHHHHhCCE--EEECChh-HHHHHHHcCCCEEECCCCCCChH----HHhc-CceEEeC---------CCHHHH
Confidence 66654 56677887 8987764 47999999999999876666553 2334 7665443 267889
Q ss_pred HHHHHHhh
Q 043290 422 ESAVRCLM 429 (430)
Q Consensus 422 ~~ai~~vl 429 (430)
.+++.+++
T Consensus 325 ~~ai~~ll 332 (365)
T TIGR00236 325 TKAAKRLL 332 (365)
T ss_pred HHHHHHHH
Confidence 99988876
No 76
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.11 E-value=0.0017 Score=61.58 Aligned_cols=76 Identities=11% Similarity=0.060 Sum_probs=51.6
Q ss_pred cCceEEEeccc-hhhhhccCceeEEEec----cCchhHHHHHHhCCceeecccccccchhHHHHhhhhceeEEeeccccc
Q 043290 337 KGRGMICGWVP-QVEILAHKAIGGFVSH----CGWNSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDLRLDYRV 411 (430)
Q Consensus 337 ~~~~~v~~~~p-q~~iL~~~~~~~~itH----gG~~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~~~~~ 411 (430)
.+|+.+.++.. ...++..+++ +|.- |..+++.||+++|+|+|+. |...+...+.+. |.. +.
T Consensus 244 ~~~v~~~g~~~~~~~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i~~~-g~~--~~----- 309 (360)
T cd04951 244 SNRVKLLGLRDDIAAYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVVGDS-GLI--VP----- 309 (360)
T ss_pred CCcEEEecccccHHHHHHhhce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEecCC-ceE--eC-----
Confidence 35778887654 3577888888 4442 2256899999999999974 444555555543 544 33
Q ss_pred CCcccCHhHHHHHHHHhh
Q 043290 412 GSDLVMACDIESAVRCLM 429 (430)
Q Consensus 412 ~~~~~~~~~l~~ai~~vl 429 (430)
.-+.++++++|.+++
T Consensus 310 ---~~~~~~~~~~i~~ll 324 (360)
T cd04951 310 ---ISDPEALANKIDEIL 324 (360)
T ss_pred ---CCCHHHHHHHHHHHH
Confidence 237888899888875
No 77
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.11 E-value=0.0019 Score=61.58 Aligned_cols=79 Identities=19% Similarity=0.137 Sum_probs=57.8
Q ss_pred cCceEEEeccchhhh---hccCceeEEEec----------cCchhHHHHHHhCCceeecccccccchhHHHHhhhhceeE
Q 043290 337 KGRGMICGWVPQVEI---LAHKAIGGFVSH----------CGWNSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLAL 403 (430)
Q Consensus 337 ~~~~~v~~~~pq~~i---L~~~~~~~~itH----------gG~~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~ 403 (430)
.+++.+.+++|++++ +..+++ +|.- |-.+++.||+++|+|+|+-+..+ ++..+.+. +.|.
T Consensus 244 ~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~----~~e~i~~~-~~g~ 316 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGG----IPEAVEDG-ETGL 316 (367)
T ss_pred CCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCC----chhheecC-CeeE
Confidence 467888899997655 788888 5532 23568999999999999877643 55555554 7787
Q ss_pred EeecccccCCcccCHhHHHHHHHHhhC
Q 043290 404 DLRLDYRVGSDLVMACDIESAVRCLMD 430 (430)
Q Consensus 404 ~~~~~~~~~~~~~~~~~l~~ai~~vl~ 430 (430)
.++. -+.++++++|.++++
T Consensus 317 ~~~~--------~d~~~l~~~i~~l~~ 335 (367)
T cd05844 317 LVPE--------GDVAALAAALGRLLA 335 (367)
T ss_pred EECC--------CCHHHHHHHHHHHHc
Confidence 6653 477899999988763
No 78
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.08 E-value=0.0019 Score=60.50 Aligned_cols=77 Identities=14% Similarity=0.019 Sum_probs=49.9
Q ss_pred cCceEEEeccch-hhhhccCceeEEEec--cCchhHHHHHHhCCceeecccccccchhHHHHhhhhceeEEeecccccCC
Q 043290 337 KGRGMICGWVPQ-VEILAHKAIGGFVSH--CGWNSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDLRLDYRVGS 413 (430)
Q Consensus 337 ~~~~~v~~~~pq-~~iL~~~~~~~~itH--gG~~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~~~~~~~ 413 (430)
.+++.+.++.+. ..++..+++-++-++ |..+++.||+++|+|+|+.... .....+.+. +.|...+.
T Consensus 245 ~~~v~~~g~~~~~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i~~~-~~g~~~~~------ 313 (353)
T cd03811 245 ADRVHFLGFQSNPYPYLKAADLFVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREILEDG-ENGLLVPV------ 313 (353)
T ss_pred CccEEEecccCCHHHHHHhCCEEEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHhcCC-CceEEECC------
Confidence 357777787663 468888888332222 3356899999999999986543 455555555 77876653
Q ss_pred cccCHhHHHHHHH
Q 043290 414 DLVMACDIESAVR 426 (430)
Q Consensus 414 ~~~~~~~l~~ai~ 426 (430)
-+.+.++++++
T Consensus 314 --~~~~~~~~~~~ 324 (353)
T cd03811 314 --GDEAALAAAAL 324 (353)
T ss_pred --CCHHHHHHHHH
Confidence 35666643333
No 79
>PLN02275 transferase, transferring glycosyl groups
Probab=98.06 E-value=0.012 Score=56.35 Aligned_cols=75 Identities=12% Similarity=0.130 Sum_probs=52.8
Q ss_pred CceEEE-eccchhhh---hccCceeEEEe-c-----cC-chhHHHHHHhCCceeecccccccchhHHHHhhhhceeEEee
Q 043290 338 GRGMIC-GWVPQVEI---LAHKAIGGFVS-H-----CG-WNSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDLR 406 (430)
Q Consensus 338 ~~~~v~-~~~pq~~i---L~~~~~~~~it-H-----gG-~~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~ 406 (430)
+|+.+. .|+|+.++ |+.+++ ||. + -| -+++.||+++|+|+|+... ......|.+. +.|..++
T Consensus 286 ~~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~----gg~~eiv~~g-~~G~lv~ 358 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIGELVKDG-KNGLLFS 358 (371)
T ss_pred CceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHHHCCCCEEEecC----CChHHHccCC-CCeEEEC
Confidence 356665 48998766 888998 663 1 12 3579999999999999753 2355555554 6787653
Q ss_pred cccccCCcccCHhHHHHHHHHhh
Q 043290 407 LDYRVGSDLVMACDIESAVRCLM 429 (430)
Q Consensus 407 ~~~~~~~~~~~~~~l~~ai~~vl 429 (430)
++++++++|.++|
T Consensus 359 ----------~~~~la~~i~~l~ 371 (371)
T PLN02275 359 ----------SSSELADQLLELL 371 (371)
T ss_pred ----------CHHHHHHHHHHhC
Confidence 4789999998875
No 80
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.01 E-value=0.022 Score=58.87 Aligned_cols=80 Identities=13% Similarity=0.013 Sum_probs=49.0
Q ss_pred cCceEEEecc-ch---hhhhcc-Cc-eeEEEe---ccC-chhHHHHHHhCCceeecccccccchhHHHHhhhhceeEEee
Q 043290 337 KGRGMICGWV-PQ---VEILAH-KA-IGGFVS---HCG-WNSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDLR 406 (430)
Q Consensus 337 ~~~~~v~~~~-pq---~~iL~~-~~-~~~~it---HgG-~~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~ 406 (430)
.+++.+.++. +. ..++.+ ++ .++||. .=| -.+++||+++|+|+|+.-.. .....|.+- .-|..++
T Consensus 618 ~g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~G----G~~EiV~dg-~tGfLVd 692 (784)
T TIGR02470 618 HGQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRFG----GPLEIIQDG-VSGFHID 692 (784)
T ss_pred CCeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCCC----CHHHHhcCC-CcEEEeC
Confidence 3677777764 32 234442 21 122663 223 34999999999999986543 344445553 5577766
Q ss_pred cccccCCcccCHhHHHHHHHHhh
Q 043290 407 LDYRVGSDLVMACDIESAVRCLM 429 (430)
Q Consensus 407 ~~~~~~~~~~~~~~l~~ai~~vl 429 (430)
. -++++++++|.+++
T Consensus 693 p--------~D~eaLA~aL~~ll 707 (784)
T TIGR02470 693 P--------YHGEEAAEKIVDFF 707 (784)
T ss_pred C--------CCHHHHHHHHHHHH
Confidence 3 47788888887764
No 81
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=97.95 E-value=0.019 Score=54.46 Aligned_cols=78 Identities=10% Similarity=-0.029 Sum_probs=52.5
Q ss_pred cCceEEEeccc-hhhhhccCceeEEEec----cCchhHHHHHHhCCceeecccccccchhHHHHhhhhceeEEeeccccc
Q 043290 337 KGRGMICGWVP-QVEILAHKAIGGFVSH----CGWNSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDLRLDYRV 411 (430)
Q Consensus 337 ~~~~~v~~~~p-q~~iL~~~~~~~~itH----gG~~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~~~~~ 411 (430)
.+++.+.++.. -..++..+++ +|.- |-.++++||+++|+|+|+....+ ....+.+ +.|....
T Consensus 248 ~~~v~~~g~~~~~~~~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i~~--~~~~~~~----- 314 (358)
T cd03812 248 EDKVIFLGVRNDVPELLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDLTD--LVKFLSL----- 314 (358)
T ss_pred CCcEEEecccCCHHHHHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhhcc--CccEEeC-----
Confidence 35777777643 3678888888 5532 44679999999999999866544 2223333 4454333
Q ss_pred CCcccCHhHHHHHHHHhhC
Q 043290 412 GSDLVMACDIESAVRCLMD 430 (430)
Q Consensus 412 ~~~~~~~~~l~~ai~~vl~ 430 (430)
.-++++++++|.++++
T Consensus 315 ---~~~~~~~a~~i~~l~~ 330 (358)
T cd03812 315 ---DESPEIWAEEILKLKS 330 (358)
T ss_pred ---CCCHHHHHHHHHHHHh
Confidence 2357999999998864
No 82
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=97.91 E-value=0.022 Score=53.96 Aligned_cols=132 Identities=13% Similarity=-0.003 Sum_probs=74.9
Q ss_pred CcEEEEeecCCc-cCCHHHHHHHHHHHHhC--CCcEEEEEecCCCCCccccccccCCCCCCChhH---HH--hhcCceEE
Q 043290 271 SSVVFLCFGSSG-SFDVAQVKEIAIGLERS--GYNFLWSLRVSCPKDEASAHRYVTNNGVFPEGF---LE--RIKGRGMI 342 (430)
Q Consensus 271 ~~vVyvsfGS~~-~~~~~~~~~~~~al~~~--~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~v 342 (430)
+..+++..|.+. .-..+.+.+++..+.+. +.++++. |..... ..+...+ .. ...+++.+
T Consensus 184 ~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~iv-G~~~~~------------~~~~~~~~~~~~~~~~~~~v~~ 250 (355)
T cd03819 184 GKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIV-GDAQGR------------RFYYAELLELIKRLGLQDRVTF 250 (355)
T ss_pred CceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEE-ECCccc------------chHHHHHHHHHHHcCCcceEEE
Confidence 346666677765 33445555666666553 3444443 332110 0111111 11 12357888
Q ss_pred Eeccc-hhhhhccCceeEEEec--cC-chhHHHHHHhCCceeecccccccchhHHHHhhhhceeEEeecccccCCcccCH
Q 043290 343 CGWVP-QVEILAHKAIGGFVSH--CG-WNSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDLRLDYRVGSDLVMA 418 (430)
Q Consensus 343 ~~~~p-q~~iL~~~~~~~~itH--gG-~~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~~~~~~~~~~~~ 418 (430)
.+|.+ ...++..+++.++-++ -| .+++.||+++|+|+|+.-.. .....+.+. +.|..++. -+.
T Consensus 251 ~g~~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~----~~~e~i~~~-~~g~~~~~--------~~~ 317 (355)
T cd03819 251 VGHCSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDHG----GARETVRPG-ETGLLVPP--------GDA 317 (355)
T ss_pred cCCcccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCCC----CcHHHHhCC-CceEEeCC--------CCH
Confidence 88843 4567888888443332 23 35999999999999986543 334444443 56776653 478
Q ss_pred hHHHHHHHHh
Q 043290 419 CDIESAVRCL 428 (430)
Q Consensus 419 ~~l~~ai~~v 428 (430)
++++++|..+
T Consensus 318 ~~l~~~i~~~ 327 (355)
T cd03819 318 EALAQALDQI 327 (355)
T ss_pred HHHHHHHHHH
Confidence 8888888544
No 83
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=97.82 E-value=0.00025 Score=66.54 Aligned_cols=76 Identities=17% Similarity=0.098 Sum_probs=55.3
Q ss_pred chhhhhccCceeEEEeccCchhHHHHHHhCCceeecccc--cccchhHHHHh---hhhceeEEeec----c---cccCCc
Q 043290 347 PQVEILAHKAIGGFVSHCGWNSILESLWYGVPIATWPIY--AEQQLNAFRMV---KEQGLALDLRL----D---YRVGSD 414 (430)
Q Consensus 347 pq~~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~P~~--~DQ~~~a~rv~---~~~G~G~~~~~----~---~~~~~~ 414 (430)
.-.+++..+++ +|+-+|..|+ |+..+|+|||+ ++- .=|..||+++. .. |+.-.+-. + -|--++
T Consensus 228 ~~~~~m~~aDl--al~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv~~~~i-gL~Nii~~~~~~~~vvPEllQ~ 302 (347)
T PRK14089 228 DTHKALLEAEF--AFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFVKLKHI-GLANIFFDFLGKEPLHPELLQE 302 (347)
T ss_pred cHHHHHHhhhH--HHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHHcCCee-ehHHHhcCCCcccccCchhhcc
Confidence 34578899998 9999999998 99999999999 553 35888999988 43 55533311 0 011244
Q ss_pred ccCHhHHHHHHHH
Q 043290 415 LVMACDIESAVRC 427 (430)
Q Consensus 415 ~~~~~~l~~ai~~ 427 (430)
..|++.|.+++.+
T Consensus 303 ~~t~~~la~~i~~ 315 (347)
T PRK14089 303 FVTVENLLKAYKE 315 (347)
T ss_pred cCCHHHHHHHHHH
Confidence 7899999988864
No 84
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=97.76 E-value=0.0023 Score=63.51 Aligned_cols=183 Identities=13% Similarity=0.064 Sum_probs=92.0
Q ss_pred cccccHHHHHHhhcCCCCCeEEeC-ccccCCCCCCCCCChhcHhHHHHHhhcCCCCcEEEEeecCCccCCHHHHHHHHHH
Q 043290 217 FHELEPYAVNAFSGDLNPPLYTVG-PVLHLKSQPNPDLDEAQYQKIFQWLDDLAESSVVFLCFGSSGSFDVAQVKEIAIG 295 (430)
Q Consensus 217 ~~~le~~~~~~~~~~~~~~~~~VG-pl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vVyvsfGS~~~~~~~~~~~~~~a 295 (430)
..-+|.++... ..-++.+|| |+...-.. ....++..+-+.-.+++++|-+=-||-...=...+..++++
T Consensus 368 IfPFE~~~y~~----~gv~v~yVGHPL~d~i~~------~~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~a 437 (608)
T PRK01021 368 ILPFEQNLFKD----SPLRTVYLGHPLVETISS------FSPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQA 437 (608)
T ss_pred cCccCHHHHHh----cCCCeEEECCcHHhhccc------CCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 34456553322 345699999 88755321 11222223323222356789999999543222334445555
Q ss_pred HH--h--CCCcEEEEEecCCCCCccccccccCCCCCCChhHHHhh-cC---ceEEEeccchhhhhccCceeEEEeccCch
Q 043290 296 LE--R--SGYNFLWSLRVSCPKDEASAHRYVTNNGVFPEGFLERI-KG---RGMICGWVPQVEILAHKAIGGFVSHCGWN 367 (430)
Q Consensus 296 l~--~--~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~v~~~~pq~~iL~~~~~~~~itHgG~~ 367 (430)
.+ . .+.+++...-... ..+.+.+.. +. .+.++.--...+++..+++ .+.-+|-
T Consensus 438 a~~~~l~~~l~fvvp~a~~~----------------~~~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD~--aLaaSGT- 498 (608)
T PRK01021 438 FLASSLASTHQLLVSSANPK----------------YDHLILEVLQQEGCLHSHIVPSQFRYELMRECDC--ALAKCGT- 498 (608)
T ss_pred HHHHHhccCeEEEEecCchh----------------hHHHHHHHHhhcCCCCeEEecCcchHHHHHhcCe--eeecCCH-
Confidence 54 2 2456655422210 001111111 11 2233311012588999998 7777775
Q ss_pred hHHHHHHhCCceeecc-cccccchhHHHHhhh--hcee-------EEeecccccCCcccCHhHHHHHHHHhh
Q 043290 368 SILESLWYGVPIATWP-IYAEQQLNAFRMVKE--QGLA-------LDLRLDYRVGSDLVMACDIESAVRCLM 429 (430)
Q Consensus 368 s~~eal~~GvP~v~~P-~~~DQ~~~a~rv~~~--~G~G-------~~~~~~~~~~~~~~~~~~l~~ai~~vl 429 (430)
.|+|+..+|+|||++= ...=-...|+++.+. -=+| ..+-.+.-..+++.|++.|++++ ++|
T Consensus 499 aTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~l-~lL 569 (608)
T PRK01021 499 IVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAAL-DIL 569 (608)
T ss_pred HHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHHH-HHh
Confidence 5788999999999842 221223455565540 0111 11111111014578999999886 444
No 85
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.73 E-value=0.031 Score=53.02 Aligned_cols=47 Identities=28% Similarity=0.325 Sum_probs=35.1
Q ss_pred cCceEEEeccchhh---hhccCceeEEEeccCc-----hhHHHHHHhCCceeecccc
Q 043290 337 KGRGMICGWVPQVE---ILAHKAIGGFVSHCGW-----NSILESLWYGVPIATWPIY 385 (430)
Q Consensus 337 ~~~~~v~~~~pq~~---iL~~~~~~~~itHgG~-----~s~~eal~~GvP~v~~P~~ 385 (430)
.+++.+.+++|+.+ .+..+++ ++-+.-. +++.||+++|+|+|+....
T Consensus 247 ~~~V~~~g~~~~~~~~~~~~~ad~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~ 301 (363)
T cd04955 247 DPRIIFVGPIYDQELLELLRYAAL--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNP 301 (363)
T ss_pred CCcEEEccccChHHHHHHHHhCCE--EEeCCccCCCCChHHHHHHHcCCCEEEecCC
Confidence 46888999999875 4556666 5554333 4799999999999987654
No 86
>PLN00142 sucrose synthase
Probab=97.73 E-value=0.042 Score=57.06 Aligned_cols=116 Identities=9% Similarity=0.021 Sum_probs=59.0
Q ss_pred HHHHHHHhCCCCeE--EEEEecCCCCChhhHHhhhhc--cCCCCCeEEEeCCCCCCCCCCCCCCCHHHHHHHHHHhhhhh
Q 043290 22 EFAKHLTDRDDRIS--VTLLSMKLAVAPWVDAYAKSL--TDSQPRICIIDLPPVDPPLPDVLKKSPEYFLSLVVESHLPN 97 (430)
Q Consensus 22 ~La~~L~~rGH~v~--Vt~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (430)
.|+++|+++||++. |+++|--..... -..+..++ ....++.+.+.+|.+...+ ....+.....+..++......
T Consensus 319 el~~~l~~~G~~v~~~v~i~TR~i~~~~-~~~~~~~~e~v~~~~~~~I~rvP~g~~~~-~l~~~i~ke~l~p~L~~f~~~ 396 (815)
T PLN00142 319 EMLLRIKQQGLDIKPQILIVTRLIPDAK-GTTCNQRLEKVSGTEHSHILRVPFRTEKG-ILRKWISRFDVWPYLETFAED 396 (815)
T ss_pred HHHHHHHhcCCCccceeEEEEeccCCcc-CCcccCcceeccCCCceEEEecCCCCCcc-ccccccCHHHHHHHHHHHHHH
Confidence 46688999999842 457773211110 00111111 1223467777777664221 111122333333333333222
Q ss_pred HHHHHHHhhccCCCCceEEEEcCCcc--hHHHHHHhcCCceEEEecc
Q 043290 98 VKNIVSSRANSGSLQVTGLVLDFFCV--SMVDIAKELSLPSYIFLTS 142 (430)
Q Consensus 98 ~~~~l~~~~~~~~~~~D~vV~D~~~~--~~~~~A~~lgiP~v~~~~~ 142 (430)
+. +.+.++...+||+|.+..-.. .|..+++++|||.+....+
T Consensus 397 ~~---~~~~~~~~~~PDlIHaHYwdsg~vA~~La~~lgVP~v~T~Hs 440 (815)
T PLN00142 397 AA---SEILAELQGKPDLIIGNYSDGNLVASLLAHKLGVTQCTIAHA 440 (815)
T ss_pred HH---HHHHHhcCCCCCEEEECCccHHHHHHHHHHHhCCCEEEEccc
Confidence 22 222221234799999886444 3568899999998876643
No 87
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=97.71 E-value=0.046 Score=51.44 Aligned_cols=75 Identities=17% Similarity=0.154 Sum_probs=49.3
Q ss_pred CceEEEeccc-hhhhhccCceeEEEeccC----chhHHHHHHhCCceeecccccccchhHHHHhhhhceeEEeecccccC
Q 043290 338 GRGMICGWVP-QVEILAHKAIGGFVSHCG----WNSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDLRLDYRVG 412 (430)
Q Consensus 338 ~~~~v~~~~p-q~~iL~~~~~~~~itHgG----~~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~~~~~~ 412 (430)
+++.+.+... -..++..+++ +|..+. .+++.||+++|+|+|+... ..+...+.+ .|..+..
T Consensus 251 ~~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~----~~~~e~~~~---~g~~~~~----- 316 (365)
T cd03807 251 DKVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVATDV----GDNAELVGD---TGFLVPP----- 316 (365)
T ss_pred ceEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEcCC----CChHHHhhc---CCEEeCC-----
Confidence 4566555332 4578888888 665443 4799999999999998543 344444444 3444442
Q ss_pred CcccCHhHHHHHHHHhh
Q 043290 413 SDLVMACDIESAVRCLM 429 (430)
Q Consensus 413 ~~~~~~~~l~~ai~~vl 429 (430)
-+.++++++|.+++
T Consensus 317 ---~~~~~l~~~i~~l~ 330 (365)
T cd03807 317 ---GDPEALAEAIEALL 330 (365)
T ss_pred ---CCHHHHHHHHHHHH
Confidence 36788888888775
No 88
>PRK00654 glgA glycogen synthase; Provisional
Probab=97.68 E-value=0.027 Score=55.84 Aligned_cols=83 Identities=17% Similarity=0.131 Sum_probs=49.2
Q ss_pred hcCceEE-Eeccchh--hhhccCceeEEEe---ccCch-hHHHHHHhCCceeeccccc--ccchhHHHHhhhhceeEEee
Q 043290 336 IKGRGMI-CGWVPQV--EILAHKAIGGFVS---HCGWN-SILESLWYGVPIATWPIYA--EQQLNAFRMVKEQGLALDLR 406 (430)
Q Consensus 336 ~~~~~~v-~~~~pq~--~iL~~~~~~~~it---HgG~~-s~~eal~~GvP~v~~P~~~--DQ~~~a~rv~~~~G~G~~~~ 406 (430)
.++++.+ .++-.+. .+++.+++ ||. +-|+| +.+||+++|+|.|+.-..+ |.-.+...-.+. +.|..++
T Consensus 335 ~~~~v~~~~g~~~~~~~~~~~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~-~~G~lv~ 411 (466)
T PRK00654 335 YPGKVGVQIGYDEALAHRIYAGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGE-ATGFVFD 411 (466)
T ss_pred CCCcEEEEEeCCHHHHHHHHhhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCC-CceEEeC
Confidence 3455554 3663222 56788888 663 33444 8899999999999875432 222111111222 5676665
Q ss_pred cccccCCcccCHhHHHHHHHHhh
Q 043290 407 LDYRVGSDLVMACDIESAVRCLM 429 (430)
Q Consensus 407 ~~~~~~~~~~~~~~l~~ai~~vl 429 (430)
. -++++++++|.+++
T Consensus 412 ~--------~d~~~la~~i~~~l 426 (466)
T PRK00654 412 D--------FNAEDLLRALRRAL 426 (466)
T ss_pred C--------CCHHHHHHHHHHHH
Confidence 3 37788888887764
No 89
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=97.61 E-value=0.043 Score=52.40 Aligned_cols=129 Identities=13% Similarity=0.143 Sum_probs=77.3
Q ss_pred CcEEEEeecCCc---cCCHHHHHHHHHHHHhCCCcEEEEEecCCCCCccccccccCCCCCCChhHHHhh--cCceEEEec
Q 043290 271 SSVVFLCFGSSG---SFDVAQVKEIAIGLERSGYNFLWSLRVSCPKDEASAHRYVTNNGVFPEGFLERI--KGRGMICGW 345 (430)
Q Consensus 271 ~~vVyvsfGS~~---~~~~~~~~~~~~al~~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~ 345 (430)
++.|+|++=... ....+.+.+++++|.+.+.++++......+.. ..+-..+.+.. .+|+.+.+-
T Consensus 201 ~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p~~-----------~~i~~~i~~~~~~~~~v~l~~~ 269 (365)
T TIGR03568 201 KPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNADAGS-----------RIINEAIEEYVNEHPNFRLFKS 269 (365)
T ss_pred CCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCCCCc-----------hHHHHHHHHHhcCCCCEEEECC
Confidence 468888885432 33457799999999888766666543221100 00111111111 357888865
Q ss_pred cc---hhhhhccCceeEEEeccCchhHHHHHHhCCceeecccccccchhHHHHhhhhceeEEeecccccCCcccCHhHHH
Q 043290 346 VP---QVEILAHKAIGGFVSHCGWNSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDLRLDYRVGSDLVMACDIE 422 (430)
Q Consensus 346 ~p---q~~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~~~~~~~~~~~~~~l~ 422 (430)
++ ...++.++++ +||.++.+- .||.+.|||+|.+- +.+.. .+. |--+. .. ..++++|.
T Consensus 270 l~~~~~l~Ll~~a~~--vitdSSggi-~EA~~lg~Pvv~l~---~R~e~----~~~-g~nvl-~v-------g~~~~~I~ 330 (365)
T TIGR03568 270 LGQERYLSLLKNADA--VIGNSSSGI-IEAPSFGVPTINIG---TRQKG----RLR-ADSVI-DV-------DPDKEEIV 330 (365)
T ss_pred CChHHHHHHHHhCCE--EEEcChhHH-HhhhhcCCCEEeec---CCchh----hhh-cCeEE-Ee-------CCCHHHHH
Confidence 44 5567788998 998875555 99999999999774 22211 122 32222 11 34678888
Q ss_pred HHHHHhh
Q 043290 423 SAVRCLM 429 (430)
Q Consensus 423 ~ai~~vl 429 (430)
+++++++
T Consensus 331 ~a~~~~~ 337 (365)
T TIGR03568 331 KAIEKLL 337 (365)
T ss_pred HHHHHHh
Confidence 8888754
No 90
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=97.60 E-value=0.067 Score=50.54 Aligned_cols=57 Identities=28% Similarity=0.281 Sum_probs=47.4
Q ss_pred EEeccCchhHHHHHHhCCceeecccccccchhHHHHhhhhceeEEeecccccCCcccCHhHHHHHHHHh
Q 043290 360 FVSHCGWNSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDLRLDYRVGSDLVMACDIESAVRCL 428 (430)
Q Consensus 360 ~itHgG~~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~~~~~~~~~~~~~~l~~ai~~v 428 (430)
|+-+||+| .+|++++|+|+|.=|+..-|.+.++++.+. |.|+.++ +++.+.+++.-+
T Consensus 327 lv~~GGHN-~LEpa~~~~pvi~Gp~~~Nf~ei~~~l~~~-ga~~~v~----------~~~~l~~~v~~l 383 (419)
T COG1519 327 LVPIGGHN-PLEPAAFGTPVIFGPYTFNFSDIAERLLQA-GAGLQVE----------DADLLAKAVELL 383 (419)
T ss_pred ccCCCCCC-hhhHHHcCCCEEeCCccccHHHHHHHHHhc-CCeEEEC----------CHHHHHHHHHHh
Confidence 45689986 789999999999999999999999999998 9998876 255566655543
No 91
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=97.58 E-value=0.08 Score=50.90 Aligned_cols=78 Identities=17% Similarity=0.120 Sum_probs=49.9
Q ss_pred ceEEE-eccchh---hhhccCceeEEEec----cCchhHHHHHHhCCceeecccccccchhHHHHhhhhceeEEeecccc
Q 043290 339 RGMIC-GWVPQV---EILAHKAIGGFVSH----CGWNSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDLRLDYR 410 (430)
Q Consensus 339 ~~~v~-~~~pq~---~iL~~~~~~~~itH----gG~~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~~~~ 410 (430)
++... +++|+. .++..+++ ||.= +...++.||+++|+|+|+.... .....+.+. +.|..++.+
T Consensus 261 ~v~~~~~~~~~~~~~~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~----~~~e~i~~~-~~G~~~~~~-- 331 (388)
T TIGR02149 261 GIIWINKMLPKEELVELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASATG----GIPEVVVDG-ETGFLVPPD-- 331 (388)
T ss_pred ceEEecCCCCHHHHHHHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCCC----CHHHHhhCC-CceEEcCCC--
Confidence 34443 677765 45778887 5531 2235779999999999997643 344445554 567776643
Q ss_pred cCCcccC----HhHHHHHHHHhh
Q 043290 411 VGSDLVM----ACDIESAVRCLM 429 (430)
Q Consensus 411 ~~~~~~~----~~~l~~ai~~vl 429 (430)
+.+ .+++.++|.+++
T Consensus 332 ----~~~~~~~~~~l~~~i~~l~ 350 (388)
T TIGR02149 332 ----NSDADGFQAELAKAINILL 350 (388)
T ss_pred ----CCcccchHHHHHHHHHHHH
Confidence 211 278888887765
No 92
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=97.46 E-value=0.022 Score=53.91 Aligned_cols=77 Identities=18% Similarity=0.130 Sum_probs=50.5
Q ss_pred hcCceEEEeccchh---hhhccCceeEEEec----cCchhHHHHHHhCCceeecccccccchhHHHHhhhhceeEEeecc
Q 043290 336 IKGRGMICGWVPQV---EILAHKAIGGFVSH----CGWNSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDLRLD 408 (430)
Q Consensus 336 ~~~~~~v~~~~pq~---~iL~~~~~~~~itH----gG~~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~~ 408 (430)
..+++.+.+++|+. .++..+++ +|.- |..+++.||+++|+|+|+.... .....+.+ .|..+.
T Consensus 251 ~~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~----~~~e~~~~---~~~~~~-- 319 (365)
T cd03809 251 LGDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNIS----SLPEVAGD---AALYFD-- 319 (365)
T ss_pred CCCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCC----CccceecC---ceeeeC--
Confidence 34678888999886 45777887 4422 3345899999999999986542 22222222 233334
Q ss_pred cccCCcccCHhHHHHHHHHhh
Q 043290 409 YRVGSDLVMACDIESAVRCLM 429 (430)
Q Consensus 409 ~~~~~~~~~~~~l~~ai~~vl 429 (430)
.-+.+++.++|.+++
T Consensus 320 ------~~~~~~~~~~i~~l~ 334 (365)
T cd03809 320 ------PLDPEALAAAIERLL 334 (365)
T ss_pred ------CCCHHHHHHHHHHHh
Confidence 237888998888865
No 93
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=97.41 E-value=0.0057 Score=57.87 Aligned_cols=173 Identities=17% Similarity=0.147 Sum_probs=90.5
Q ss_pred CCeEEeC-ccccCCCCCCCCCChhcHhHHHHH-hhcCCCCcEEEEeecCCccCCHHHHHHHHHHHHh-----CCCcEEEE
Q 043290 234 PPLYTVG-PVLHLKSQPNPDLDEAQYQKIFQW-LDDLAESSVVFLCFGSSGSFDVAQVKEIAIGLER-----SGYNFLWS 306 (430)
Q Consensus 234 ~~~~~VG-pl~~~~~~~~~~~~~~~~~~l~~~-l~~~~~~~vVyvsfGS~~~~~~~~~~~~~~al~~-----~~~~~vw~ 306 (430)
-++.||| |+...-.. ........+. ++. ++++|-+=-||-...=...+..++++.+. .+.++++.
T Consensus 153 ~~~~~VGHPl~d~~~~------~~~~~~~~~~~l~~--~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp 224 (373)
T PF02684_consen 153 VPVTYVGHPLLDEVKP------EPDRAEAREKLLDP--DKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVP 224 (373)
T ss_pred CCeEEECCcchhhhcc------CCCHHHHHHhcCCC--CCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEe
Confidence 4699999 88755432 1122233332 343 56799999999542222222334444332 46677766
Q ss_pred EecCCCCCccccccccCCCCCCChhHHHhhcCceEEE-eccchhhhhccCceeEEEeccCchhHHHHHHhCCceeecc-c
Q 043290 307 LRVSCPKDEASAHRYVTNNGVFPEGFLERIKGRGMIC-GWVPQVEILAHKAIGGFVSHCGWNSILESLWYGVPIATWP-I 384 (430)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~pq~~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~P-~ 384 (430)
.-.... ...+ .........++.+. ..-.-.+++..+++ .+.-+|- .|+|+..+|+|||++= .
T Consensus 225 ~a~~~~------------~~~i-~~~~~~~~~~~~~~~~~~~~~~~m~~ad~--al~~SGT-aTLE~Al~g~P~Vv~Yk~ 288 (373)
T PF02684_consen 225 VAPEVH------------EELI-EEILAEYPPDVSIVIIEGESYDAMAAADA--ALAASGT-ATLEAALLGVPMVVAYKV 288 (373)
T ss_pred cCCHHH------------HHHH-HHHHHhhCCCCeEEEcCCchHHHHHhCcc--hhhcCCH-HHHHHHHhCCCEEEEEcC
Confidence 432200 0000 00111112222322 33356668888887 5655554 6789999999999853 2
Q ss_pred ccccchhHHHHhhhhceeE-Eeeccc----ccCCcccCHhHHHHHHHHhhC
Q 043290 385 YAEQQLNAFRMVKEQGLAL-DLRLDY----RVGSDLVMACDIESAVRCLMD 430 (430)
Q Consensus 385 ~~DQ~~~a~rv~~~~G~G~-~~~~~~----~~~~~~~~~~~l~~ai~~vl~ 430 (430)
..=-...|+++.+.-=+|+ .+-.+. |--++..|++.|.+++.++|+
T Consensus 289 ~~lt~~iak~lvk~~~isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~ 339 (373)
T PF02684_consen 289 SPLTYFIAKRLVKVKYISLPNIIAGREVVPELIQEDATPENIAAELLELLE 339 (373)
T ss_pred cHHHHHHHHHhhcCCEeechhhhcCCCcchhhhcccCCHHHHHHHHHHHhc
Confidence 2233455666644312221 000011 223458899999999988764
No 94
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.38 E-value=0.0013 Score=63.50 Aligned_cols=102 Identities=25% Similarity=0.325 Sum_probs=60.9
Q ss_pred CCcEEEEeecCCccCCHHHHHHHHHHHHhCCCcEEEEEecCCCCCccccccccCCCCCCChhHHH--hhcCceEEEeccc
Q 043290 270 ESSVVFLCFGSSGSFDVAQVKEIAIGLERSGYNFLWSLRVSCPKDEASAHRYVTNNGVFPEGFLE--RIKGRGMICGWVP 347 (430)
Q Consensus 270 ~~~vVyvsfGS~~~~~~~~~~~~~~al~~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~p 347 (430)
++.++|.||.+..-.+++.+..-++-|++.+...+|..+.... .+..+-..+.+ ..++++.+.++.|
T Consensus 283 ~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~-----------~~~~l~~~~~~~Gv~~~Ri~f~~~~~ 351 (468)
T PF13844_consen 283 EDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPAS-----------GEARLRRRFAAHGVDPDRIIFSPVAP 351 (468)
T ss_dssp SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTT-----------HHHHHHHHHHHTTS-GGGEEEEE---
T ss_pred CCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHH-----------HHHHHHHHHHHcCCChhhEEEcCCCC
Confidence 4569999999999999999999999999999999998765411 00111111111 1246788888888
Q ss_pred hhhhhc---cCceeEEE---eccCchhHHHHHHhCCceeeccc
Q 043290 348 QVEILA---HKAIGGFV---SHCGWNSILESLWYGVPIATWPI 384 (430)
Q Consensus 348 q~~iL~---~~~~~~~i---tHgG~~s~~eal~~GvP~v~~P~ 384 (430)
+.+-|. ..++ ++ ..+|.+|++|||+.|||+|.+|-
T Consensus 352 ~~ehl~~~~~~DI--~LDT~p~nG~TTt~dALwmGVPvVTl~G 392 (468)
T PF13844_consen 352 REEHLRRYQLADI--CLDTFPYNGGTTTLDALWMGVPVVTLPG 392 (468)
T ss_dssp HHHHHHHGGG-SE--EE--SSS--SHHHHHHHHHT--EEB---
T ss_pred HHHHHHHhhhCCE--EeeCCCCCCcHHHHHHHHcCCCEEeccC
Confidence 665554 4565 43 45789999999999999999994
No 95
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=97.30 E-value=0.0018 Score=52.05 Aligned_cols=78 Identities=21% Similarity=0.185 Sum_probs=48.9
Q ss_pred cCceEEEeccc-hhhhhccCceeEEEec---cCchhHHHHHHhCCceeecccccccchhHHHHhhhhceeEEeecccccC
Q 043290 337 KGRGMICGWVP-QVEILAHKAIGGFVSH---CGWNSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDLRLDYRVG 412 (430)
Q Consensus 337 ~~~~~v~~~~p-q~~iL~~~~~~~~itH---gG~~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~~~~~~ 412 (430)
..|+.+.+|++ ..++++.+++.+..+. +-.+++.|++++|+|+|+.+.. ....+... +.|..+ .+
T Consensus 52 ~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~~-----~~~~~~~~-~~~~~~-~~---- 120 (135)
T PF13692_consen 52 RPNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDNG-----AEGIVEED-GCGVLV-AN---- 120 (135)
T ss_dssp HCTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHHH-----CHCHS----SEEEE--TT----
T ss_pred CCCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCcc-----hhhheeec-CCeEEE-CC----
Confidence 45899999986 4556888998666553 2348999999999999998871 22222333 777766 33
Q ss_pred CcccCHhHHHHHHHHhh
Q 043290 413 SDLVMACDIESAVRCLM 429 (430)
Q Consensus 413 ~~~~~~~~l~~ai~~vl 429 (430)
+++++.++|++++
T Consensus 121 ----~~~~l~~~i~~l~ 133 (135)
T PF13692_consen 121 ----DPEELAEAIERLL 133 (135)
T ss_dssp -----HHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHh
Confidence 8999999999986
No 96
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=97.30 E-value=0.0015 Score=62.09 Aligned_cols=124 Identities=10% Similarity=0.057 Sum_probs=80.3
Q ss_pred EEEeecCCccCCHHHHHHHHHHHHhCCCcEEEEEecCCCCCccccccccCCCCCCChhHHHhhcCceEEEeccchh---h
Q 043290 274 VFLCFGSSGSFDVAQVKEIAIGLERSGYNFLWSLRVSCPKDEASAHRYVTNNGVFPEGFLERIKGRGMICGWVPQV---E 350 (430)
Q Consensus 274 VyvsfGS~~~~~~~~~~~~~~al~~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~pq~---~ 350 (430)
.++..|++. .....+.+++++++.+.++++. |.+. ..+.+.+...+|+.+.+++|+. .
T Consensus 197 ~il~~G~~~--~~K~~~~li~a~~~~~~~l~iv-G~g~----------------~~~~l~~~~~~~V~~~g~~~~~~~~~ 257 (351)
T cd03804 197 YYLSVGRLV--PYKRIDLAIEAFNKLGKRLVVI-GDGP----------------ELDRLRAKAGPNVTFLGRVSDEELRD 257 (351)
T ss_pred EEEEEEcCc--cccChHHHHHHHHHCCCcEEEE-ECCh----------------hHHHHHhhcCCCEEEecCCCHHHHHH
Confidence 344567654 2234667888888877776664 3321 0122223456789999999985 4
Q ss_pred hhccCceeEEEeccCch-hHHHHHHhCCceeecccccccchhHHHHhhhhceeEEeecccccCCcccCHhHHHHHHHHhh
Q 043290 351 ILAHKAIGGFVSHCGWN-SILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDLRLDYRVGSDLVMACDIESAVRCLM 429 (430)
Q Consensus 351 iL~~~~~~~~itHgG~~-s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~~~~~~~~~~~~~~l~~ai~~vl 429 (430)
++..+++-++-+.-|+| ++.||+++|+|+|+....+ ....+.+. +.|..++. -+.++++++|.+++
T Consensus 258 ~~~~ad~~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i~~~-~~G~~~~~--------~~~~~la~~i~~l~ 324 (351)
T cd03804 258 LYARARAFLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETVIDG-VTGILFEE--------QTVESLAAAVERFE 324 (351)
T ss_pred HHHhCCEEEECCcCCCCchHHHHHHcCCCEEEeCCCC----CcceeeCC-CCEEEeCC--------CCHHHHHHHHHHHH
Confidence 67788883333344443 6789999999999976533 33344454 67877664 37888999998876
No 97
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.19 E-value=0.0024 Score=49.69 Aligned_cols=105 Identities=20% Similarity=0.181 Sum_probs=64.8
Q ss_pred EEEeecCCccCCHHHHH--HHHHHHHhCCCcEEEEEecCCCCCccccccccCCCCCCChhHHHhhcCce-EEEec--cc-
Q 043290 274 VFLCFGSSGSFDVAQVK--EIAIGLERSGYNFLWSLRVSCPKDEASAHRYVTNNGVFPEGFLERIKGRG-MICGW--VP- 347 (430)
Q Consensus 274 VyvsfGS~~~~~~~~~~--~~~~al~~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~--~p- 347 (430)
+||+-||....=...+. ++.+-.+.-..++|..+|.+.. .| + |+ .+.++ .+
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~d~---------------kp------v--agl~v~~F~~~~k 58 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNGDI---------------KP------V--AGLRVYGFDKEEK 58 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCCCc---------------cc------c--cccEEEeechHHH
Confidence 68999997421111111 1222222234578888887621 22 0 22 44433 33
Q ss_pred hhhhhccCceeEEEeccCchhHHHHHHhCCceeeccccc--------ccchhHHHHhhhhceeEE
Q 043290 348 QVEILAHKAIGGFVSHCGWNSILESLWYGVPIATWPIYA--------EQQLNAFRMVKEQGLALD 404 (430)
Q Consensus 348 q~~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~--------DQ~~~a~rv~~~~G~G~~ 404 (430)
-+.+...+++ +|+|||-||++.++.-++|.|++|-.. -|-..|..+++. +.=+.
T Consensus 59 iQsli~darI--VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae~-~~vv~ 120 (161)
T COG5017 59 IQSLIHDARI--VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAEI-NYVVA 120 (161)
T ss_pred HHHHhhcceE--EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHhc-CceEE
Confidence 3455556666 999999999999999999999999644 377777777775 54443
No 98
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.17 E-value=0.0085 Score=58.25 Aligned_cols=81 Identities=17% Similarity=0.160 Sum_probs=55.7
Q ss_pred CceEEEeccchhhhh---ccCceeEEEeccC----chhHHHHHHhCCceeecccccccchhHHHHhhhhceeEEeecccc
Q 043290 338 GRGMICGWVPQVEIL---AHKAIGGFVSHCG----WNSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDLRLDYR 410 (430)
Q Consensus 338 ~~~~v~~~~pq~~iL---~~~~~~~~itHgG----~~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~~~~ 410 (430)
+++.+.+|+++.++. ..+++.+||...- -++++||+++|+|+|+.... .....+.+. +.|..+..
T Consensus 289 ~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vg----g~~e~i~~~-~~G~l~~~--- 360 (407)
T cd04946 289 ISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVG----GTPEIVDNG-GNGLLLSK--- 360 (407)
T ss_pred ceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCC----CcHHHhcCC-CcEEEeCC---
Confidence 468888999987544 4433334775543 45899999999999986543 345455443 47876653
Q ss_pred cCCcccCHhHHHHHHHHhhC
Q 043290 411 VGSDLVMACDIESAVRCLMD 430 (430)
Q Consensus 411 ~~~~~~~~~~l~~ai~~vl~ 430 (430)
.-+.++++++|.++++
T Consensus 361 ----~~~~~~la~~I~~ll~ 376 (407)
T cd04946 361 ----DPTPNELVSSLSKFID 376 (407)
T ss_pred ----CCCHHHHHHHHHHHHh
Confidence 3478999999998763
No 99
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=97.05 E-value=0.32 Score=46.57 Aligned_cols=46 Identities=15% Similarity=0.335 Sum_probs=32.9
Q ss_pred cCceEEEecc--chh---hhhccCceeEEEecc---C-chhHHHHHHhCCceeeccc
Q 043290 337 KGRGMICGWV--PQV---EILAHKAIGGFVSHC---G-WNSILESLWYGVPIATWPI 384 (430)
Q Consensus 337 ~~~~~v~~~~--pq~---~iL~~~~~~~~itHg---G-~~s~~eal~~GvP~v~~P~ 384 (430)
.+++.+.++. ++. .+++.+++ |+.-. | ..++.||+++|+|+|+...
T Consensus 251 ~~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~ 305 (372)
T cd03792 251 DPDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPV 305 (372)
T ss_pred CCCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCC
Confidence 3567777776 433 46777787 77533 2 3499999999999998764
No 100
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=96.99 E-value=0.013 Score=56.93 Aligned_cols=78 Identities=13% Similarity=0.130 Sum_probs=55.8
Q ss_pred cCceEEEeccchhh---hhccCceeEEEe--c-------cCc-hhHHHHHHhCCceeecccccccchhHHHHhhhhceeE
Q 043290 337 KGRGMICGWVPQVE---ILAHKAIGGFVS--H-------CGW-NSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLAL 403 (430)
Q Consensus 337 ~~~~~v~~~~pq~~---iL~~~~~~~~it--H-------gG~-~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~ 403 (430)
.+++.+.+|+|+.+ ++..+++ ||. . =|. ++++||+++|+|+|+....+ ....+.+. ..|.
T Consensus 278 ~~~V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g----~~E~v~~~-~~G~ 350 (406)
T PRK15427 278 EDVVEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSG----IPELVEAD-KSGW 350 (406)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCC----chhhhcCC-CceE
Confidence 46788999999865 5778888 554 2 244 56899999999999975532 33344443 5677
Q ss_pred EeecccccCCcccCHhHHHHHHHHhh
Q 043290 404 DLRLDYRVGSDLVMACDIESAVRCLM 429 (430)
Q Consensus 404 ~~~~~~~~~~~~~~~~~l~~ai~~vl 429 (430)
.++. -+.++++++|.+++
T Consensus 351 lv~~--------~d~~~la~ai~~l~ 368 (406)
T PRK15427 351 LVPE--------NDAQALAQRLAAFS 368 (406)
T ss_pred EeCC--------CCHHHHHHHHHHHH
Confidence 6653 37889999998876
No 101
>PLN02949 transferase, transferring glycosyl groups
Probab=96.95 E-value=0.47 Score=46.85 Aligned_cols=48 Identities=13% Similarity=0.025 Sum_probs=36.1
Q ss_pred cCceEEEeccchhh---hhccCceeEEEe---ccCch-hHHHHHHhCCceeeccccc
Q 043290 337 KGRGMICGWVPQVE---ILAHKAIGGFVS---HCGWN-SILESLWYGVPIATWPIYA 386 (430)
Q Consensus 337 ~~~~~v~~~~pq~~---iL~~~~~~~~it---HgG~~-s~~eal~~GvP~v~~P~~~ 386 (430)
.+++.+.+++|+.+ +|..+++ +|+ +=|+| ++.||+++|+|+|+....+
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gG 388 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAG 388 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCC
Confidence 46889999998776 5677777 552 23444 7999999999999987543
No 102
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.89 E-value=0.7 Score=47.89 Aligned_cols=80 Identities=23% Similarity=0.176 Sum_probs=53.7
Q ss_pred cCceEEEeccch-hhhhccCceeEEEe---ccC-chhHHHHHHhCCceeecccccccchhHHHHhhhhceeEEeeccccc
Q 043290 337 KGRGMICGWVPQ-VEILAHKAIGGFVS---HCG-WNSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDLRLDYRV 411 (430)
Q Consensus 337 ~~~~~v~~~~pq-~~iL~~~~~~~~it---HgG-~~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~~~~~ 411 (430)
.+++.+.+|.++ ..++..+++ ||. +.| -++++||+++|+|+|+.... .....|.+. ..|..++.+
T Consensus 573 ~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV~dg-~~GlLv~~~--- 642 (694)
T PRK15179 573 GERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAVQEG-VTGLTLPAD--- 642 (694)
T ss_pred CCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECCC----ChHHHccCC-CCEEEeCCC---
Confidence 467888888763 567788888 554 445 46899999999999997653 234444443 467777654
Q ss_pred CCcccCHhHHHHHHHHhh
Q 043290 412 GSDLVMACDIESAVRCLM 429 (430)
Q Consensus 412 ~~~~~~~~~l~~ai~~vl 429 (430)
+.+.+++++++.+++
T Consensus 643 ---d~~~~~La~aL~~ll 657 (694)
T PRK15179 643 ---TVTAPDVAEALARIH 657 (694)
T ss_pred ---CCChHHHHHHHHHHH
Confidence 455566666665544
No 103
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=96.76 E-value=0.016 Score=48.66 Aligned_cols=78 Identities=22% Similarity=0.165 Sum_probs=56.6
Q ss_pred cCceEEEeccc---hhhhhccCceeEEEec----cCchhHHHHHHhCCceeecccccccchhHHHHhhhhceeEEeeccc
Q 043290 337 KGRGMICGWVP---QVEILAHKAIGGFVSH----CGWNSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDLRLDY 409 (430)
Q Consensus 337 ~~~~~v~~~~p---q~~iL~~~~~~~~itH----gG~~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~~~ 409 (430)
.+++.+.++.+ -..++..+++ +|+. |...++.||+++|+|+|+.- -..+...+.+. +.|..++
T Consensus 72 ~~~i~~~~~~~~~~l~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~~----~~~~~e~~~~~-~~g~~~~--- 141 (172)
T PF00534_consen 72 KENIIFLGYVPDDELDELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIASD----IGGNNEIINDG-VNGFLFD--- 141 (172)
T ss_dssp GTTEEEEESHSHHHHHHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEES----STHHHHHSGTT-TSEEEES---
T ss_pred ccccccccccccccccccccccee--ccccccccccccccccccccccceeecc----ccCCceeeccc-cceEEeC---
Confidence 46888999987 3567778888 7765 56679999999999999754 44444555554 6687766
Q ss_pred ccCCcccCHhHHHHHHHHhh
Q 043290 410 RVGSDLVMACDIESAVRCLM 429 (430)
Q Consensus 410 ~~~~~~~~~~~l~~ai~~vl 429 (430)
..+.++++++|.+++
T Consensus 142 -----~~~~~~l~~~i~~~l 156 (172)
T PF00534_consen 142 -----PNDIEELADAIEKLL 156 (172)
T ss_dssp -----TTSHHHHHHHHHHHH
T ss_pred -----CCCHHHHHHHHHHHH
Confidence 348999999999876
No 104
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=96.73 E-value=0.042 Score=52.86 Aligned_cols=81 Identities=14% Similarity=0.069 Sum_probs=55.5
Q ss_pred hcCceEEEeccchhhh---hccCceeEEEec----cCc-hhHHHHHHhCCceeecccccccchhHHHHhhhhceeEEeec
Q 043290 336 IKGRGMICGWVPQVEI---LAHKAIGGFVSH----CGW-NSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDLRL 407 (430)
Q Consensus 336 ~~~~~~v~~~~pq~~i---L~~~~~~~~itH----gG~-~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~ 407 (430)
...++.+.+++|+.++ ++.+++ ||.- -|+ .+++||+++|+|+|+.... .+...+.+. ..|..+..
T Consensus 255 l~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~g----g~~Eiv~~~-~~G~~l~~ 327 (380)
T PRK15484 255 IGDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTKG----GITEFVLEG-ITGYHLAE 327 (380)
T ss_pred cCCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCCC----CcHhhcccC-CceEEEeC
Confidence 3467888899987655 888888 6643 343 5778999999999997653 233344443 55754422
Q ss_pred ccccCCcccCHhHHHHHHHHhhC
Q 043290 408 DYRVGSDLVMACDIESAVRCLMD 430 (430)
Q Consensus 408 ~~~~~~~~~~~~~l~~ai~~vl~ 430 (430)
..+.++++++|.++++
T Consensus 328 -------~~d~~~la~~I~~ll~ 343 (380)
T PRK15484 328 -------PMTSDSIISDINRTLA 343 (380)
T ss_pred -------CCCHHHHHHHHHHHHc
Confidence 3478899999987763
No 105
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=96.57 E-value=0.02 Score=54.56 Aligned_cols=130 Identities=15% Similarity=0.115 Sum_probs=74.9
Q ss_pred cEEEEeecCCccCCHHHHHHHHHHHHhCC--CcEEEEEecCCCCCccccccccCCCCCCChhHHH--hhcCceEEEeccc
Q 043290 272 SVVFLCFGSSGSFDVAQVKEIAIGLERSG--YNFLWSLRVSCPKDEASAHRYVTNNGVFPEGFLE--RIKGRGMICGWVP 347 (430)
Q Consensus 272 ~vVyvsfGS~~~~~~~~~~~~~~al~~~~--~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~p 347 (430)
+.+++..|.........+..+++++.... .++++ +|.+.. .+.+ ....+ ..++++.+.+|.+
T Consensus 180 ~~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~i-vG~g~~------------~~~l-~~~~~~~~l~~~v~f~G~~~ 245 (359)
T PRK09922 180 PAVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHI-IGDGSD------------FEKC-KAYSRELGIEQRIIWHGWQS 245 (359)
T ss_pred CcEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEE-EeCCcc------------HHHH-HHHHHHcCCCCeEEEecccC
Confidence 35566677654323344666777776643 34443 343310 0011 11111 1246888889875
Q ss_pred h--hh---hhccCceeEEEec----cCchhHHHHHHhCCceeecc-cccccchhHHHHhhhhceeEEeecccccCCcccC
Q 043290 348 Q--VE---ILAHKAIGGFVSH----CGWNSILESLWYGVPIATWP-IYAEQQLNAFRMVKEQGLALDLRLDYRVGSDLVM 417 (430)
Q Consensus 348 q--~~---iL~~~~~~~~itH----gG~~s~~eal~~GvP~v~~P-~~~DQ~~~a~rv~~~~G~G~~~~~~~~~~~~~~~ 417 (430)
+ .. .++.+++ +|.- |--.++.||+++|+|+|+.- ..+ ....+.+. ..|..++ .-+
T Consensus 246 ~~~~~~~~~~~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv~~~-~~G~lv~--------~~d 310 (359)
T PRK09922 246 QPWEVVQQKIKNVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDIIKPG-LNGELYT--------PGN 310 (359)
T ss_pred CcHHHHHHHHhcCcE--EEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHccCC-CceEEEC--------CCC
Confidence 4 33 3445666 5542 33579999999999999876 332 22334443 5676665 348
Q ss_pred HhHHHHHHHHhhC
Q 043290 418 ACDIESAVRCLMD 430 (430)
Q Consensus 418 ~~~l~~ai~~vl~ 430 (430)
.++++++|.++++
T Consensus 311 ~~~la~~i~~l~~ 323 (359)
T PRK09922 311 IDEFVGKLNKVIS 323 (359)
T ss_pred HHHHHHHHHHHHh
Confidence 8999999998763
No 106
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=96.56 E-value=0.0073 Score=57.10 Aligned_cols=128 Identities=15% Similarity=0.142 Sum_probs=75.2
Q ss_pred CCCcEEEEeecCCccCC-H---HHHHHHHHHHHhC-CCcEEEEEecCCCCCccccccccCCCCCCChhHHHhhc--CceE
Q 043290 269 AESSVVFLCFGSSGSFD-V---AQVKEIAIGLERS-GYNFLWSLRVSCPKDEASAHRYVTNNGVFPEGFLERIK--GRGM 341 (430)
Q Consensus 269 ~~~~vVyvsfGS~~~~~-~---~~~~~~~~al~~~-~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 341 (430)
..++.++|++=...+.. + .++.+++++|.+. ++++||....+... ...+.+... +|+.
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~~---------------~~~i~~~l~~~~~v~ 242 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPRG---------------SDIIIEKLKKYDNVR 242 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HHH---------------HHHHHHHHTT-TTEE
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCchH---------------HHHHHHHhcccCCEE
Confidence 36789999996655555 4 3455566666665 88999998644100 011111111 4888
Q ss_pred EEeccc---hhhhhccCceeEEEeccCchhHH-HHHHhCCceeecccccccchhHHHHhhhhceeEEeecccccCCcccC
Q 043290 342 ICGWVP---QVEILAHKAIGGFVSHCGWNSIL-ESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDLRLDYRVGSDLVM 417 (430)
Q Consensus 342 v~~~~p---q~~iL~~~~~~~~itHgG~~s~~-eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~~~~~~~~~~~ 417 (430)
++.-++ ...+|.++++ +||..| ++. ||.+.|+|+|.+=..++.+.- ... |..+.+ ..+
T Consensus 243 ~~~~l~~~~~l~ll~~a~~--vvgdSs--GI~eEa~~lg~P~v~iR~~geRqe~----r~~-~~nvlv---------~~~ 304 (346)
T PF02350_consen 243 LIEPLGYEEYLSLLKNADL--VVGDSS--GIQEEAPSLGKPVVNIRDSGERQEG----RER-GSNVLV---------GTD 304 (346)
T ss_dssp EE----HHHHHHHHHHESE--EEESSH--HHHHHGGGGT--EEECSSS-S-HHH----HHT-TSEEEE---------TSS
T ss_pred EECCCCHHHHHHHHhcceE--EEEcCc--cHHHHHHHhCCeEEEecCCCCCHHH----Hhh-cceEEe---------CCC
Confidence 885554 5667778888 999999 777 999999999999333333322 122 444432 358
Q ss_pred HhHHHHHHHHhh
Q 043290 418 ACDIESAVRCLM 429 (430)
Q Consensus 418 ~~~l~~ai~~vl 429 (430)
.++|.+||++++
T Consensus 305 ~~~I~~ai~~~l 316 (346)
T PF02350_consen 305 PEAIIQAIEKAL 316 (346)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 899999998876
No 107
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=96.46 E-value=0.81 Score=43.04 Aligned_cols=128 Identities=16% Similarity=0.202 Sum_probs=83.7
Q ss_pred CCcEEEEeecCCccCCHHHHHHHHHHHHh----C-CCcEEEEEecCCCCCccccccccCCCCCCChhHHHhhc--CceEE
Q 043290 270 ESSVVFLCFGSSGSFDVAQVKEIAIGLER----S-GYNFLWSLRVSCPKDEASAHRYVTNNGVFPEGFLERIK--GRGMI 342 (430)
Q Consensus 270 ~~~vVyvsfGS~~~~~~~~~~~~~~al~~----~-~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v 342 (430)
.+..+.|++=-..+.. +.+..+.+++.+ . +..+|...-.+ + .+.+-...+.+ .|+.+
T Consensus 203 ~~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~~~~~viyp~H~~-~--------------~v~e~~~~~L~~~~~v~l 266 (383)
T COG0381 203 DKKYILVTAHRRENVG-EPLEEICEALREIAEEYPDVIVIYPVHPR-P--------------RVRELVLKRLKNVERVKL 266 (383)
T ss_pred cCcEEEEEcchhhccc-ccHHHHHHHHHHHHHhCCCceEEEeCCCC-h--------------hhhHHHHHHhCCCCcEEE
Confidence 3468988875555554 445666665543 3 56666665433 1 11110112233 35666
Q ss_pred E---eccchhhhhccCceeEEEeccCchhHHHHHHhCCceeecccccccchhHHHHhhhhceeEEeecccccCCcccCHh
Q 043290 343 C---GWVPQVEILAHKAIGGFVSHCGWNSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDLRLDYRVGSDLVMAC 419 (430)
Q Consensus 343 ~---~~~pq~~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~~~~~~~~~~~~~ 419 (430)
. ++.+...++.++.+ .+|..|. -.-||-..|+|++++=...+||. + .++ |.-+.+ ..+.+
T Consensus 267 i~pl~~~~f~~L~~~a~~--iltDSGg-iqEEAp~lg~Pvl~lR~~TERPE---~-v~a-gt~~lv---------g~~~~ 329 (383)
T COG0381 267 IDPLGYLDFHNLMKNAFL--ILTDSGG-IQEEAPSLGKPVLVLRDTTERPE---G-VEA-GTNILV---------GTDEE 329 (383)
T ss_pred eCCcchHHHHHHHHhceE--EEecCCc-hhhhHHhcCCcEEeeccCCCCcc---c-eec-CceEEe---------CccHH
Confidence 4 78889999999988 9999874 56799999999999999999998 2 333 544333 34668
Q ss_pred HHHHHHHHhhC
Q 043290 420 DIESAVRCLMD 430 (430)
Q Consensus 420 ~l~~ai~~vl~ 430 (430)
.|.+++.++++
T Consensus 330 ~i~~~~~~ll~ 340 (383)
T COG0381 330 NILDAATELLE 340 (383)
T ss_pred HHHHHHHHHhh
Confidence 88888887763
No 108
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=96.10 E-value=0.44 Score=41.37 Aligned_cols=49 Identities=20% Similarity=0.234 Sum_probs=34.5
Q ss_pred CceEEEeccch----hhhhccCceeEEEeccC----chhHHHHHHhCCceeeccccccc
Q 043290 338 GRGMICGWVPQ----VEILAHKAIGGFVSHCG----WNSILESLWYGVPIATWPIYAEQ 388 (430)
Q Consensus 338 ~~~~v~~~~pq----~~iL~~~~~~~~itHgG----~~s~~eal~~GvP~v~~P~~~DQ 388 (430)
+|+.+.+++++ ..++..+++ +++-.. .+++.||+++|+|+|+....+.+
T Consensus 161 ~~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~~ 217 (229)
T cd01635 161 DRVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGGPP 217 (229)
T ss_pred ccEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCCcc
Confidence 46777777532 223334777 776665 68999999999999998865543
No 109
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=95.89 E-value=0.31 Score=45.64 Aligned_cols=169 Identities=17% Similarity=0.060 Sum_probs=80.8
Q ss_pred eEEeC-ccccCCCCCCCCCChhcHhHHHHHhhcCCCCcEEEEeecCCccCCHHH---HHHHHHHHHh--CCCcEEEEEec
Q 043290 236 LYTVG-PVLHLKSQPNPDLDEAQYQKIFQWLDDLAESSVVFLCFGSSGSFDVAQ---VKEIAIGLER--SGYNFLWSLRV 309 (430)
Q Consensus 236 ~~~VG-pl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vVyvsfGS~~~~~~~~---~~~~~~al~~--~~~~~vw~~~~ 309 (430)
..||| |+.....- ........+-+.-..+++++.+--||--+.=... +.+.++.|+. .+.+|+..+-.
T Consensus 158 ~~yVGHpl~d~i~~------~~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~ 231 (381)
T COG0763 158 CTYVGHPLADEIPL------LPDREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLVN 231 (381)
T ss_pred eEEeCChhhhhccc------cccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCc
Confidence 89999 77544321 1222333333322335679999999954221111 2233333331 45677766533
Q ss_pred CCCCCccccccccCCCCCCChhHHHhhc--CceEEEeccchhhhhccCceeEEEeccCchhHHHHHHhCCceeecc-ccc
Q 043290 310 SCPKDEASAHRYVTNNGVFPEGFLERIK--GRGMICGWVPQVEILAHKAIGGFVSHCGWNSILESLWYGVPIATWP-IYA 386 (430)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~pq~~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~P-~~~ 386 (430)
... ..+-..+..... -+.++.+.- -..++..+++ .+.-+|- -++|+.-+|+|||+.= .-.
T Consensus 232 ~~~-------------~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~aD~--al~aSGT-~tLE~aL~g~P~Vv~Yk~~~ 294 (381)
T COG0763 232 AKY-------------RRIIEEALKWEVAGLSLILIDGE-KRKAFAAADA--ALAASGT-ATLEAALAGTPMVVAYKVKP 294 (381)
T ss_pred HHH-------------HHHHHHHhhccccCceEEecCch-HHHHHHHhhH--HHHhccH-HHHHHHHhCCCEEEEEeccH
Confidence 210 000001110010 112222221 2235666666 6666665 4678888999999841 000
Q ss_pred ccchhHHHHhhhhceeE-------EeecccccCCcccCHhHHHHHHHHhh
Q 043290 387 EQQLNAFRMVKEQGLAL-------DLRLDYRVGSDLVMACDIESAVRCLM 429 (430)
Q Consensus 387 DQ~~~a~rv~~~~G~G~-------~~~~~~~~~~~~~~~~~l~~ai~~vl 429 (430)
=-...+++..+.+=+++ .+-.+ --++..+++.|++++.+++
T Consensus 295 it~~iak~lvk~~yisLpNIi~~~~ivPE--liq~~~~pe~la~~l~~ll 342 (381)
T COG0763 295 ITYFIAKRLVKLPYVSLPNILAGREIVPE--LIQEDCTPENLARALEELL 342 (381)
T ss_pred HHHHHHHHhccCCcccchHHhcCCccchH--HHhhhcCHHHHHHHHHHHh
Confidence 11234445444322222 11111 1123788999999998876
No 110
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.062 Score=52.46 Aligned_cols=108 Identities=19% Similarity=0.137 Sum_probs=74.1
Q ss_pred CCcEEEEeecCCccCCHHHHHHHHHHHHhCCCcEEEEEecCCCCCccccccccCCCCCCChhHHHh--hcCceEEEeccc
Q 043290 270 ESSVVFLCFGSSGSFDVAQVKEIAIGLERSGYNFLWSLRVSCPKDEASAHRYVTNNGVFPEGFLER--IKGRGMICGWVP 347 (430)
Q Consensus 270 ~~~vVyvsfGS~~~~~~~~~~~~~~al~~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~p 347 (430)
++-+||+||+...-..++.+..=++-|+..+--++|..+++.... ....+-+-+.+. ...+.++.+-.|
T Consensus 428 ~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~---------~~~~l~~la~~~Gv~~eRL~f~p~~~ 498 (620)
T COG3914 428 EDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDDAE---------INARLRDLAEREGVDSERLRFLPPAP 498 (620)
T ss_pred CCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCcHH---------HHHHHHHHHHHcCCChhheeecCCCC
Confidence 467999999999999999999988889999999999887752110 000011111111 124666777777
Q ss_pred hhhhh---ccCceeEEE---eccCchhHHHHHHhCCceeecccccccch
Q 043290 348 QVEIL---AHKAIGGFV---SHCGWNSILESLWYGVPIATWPIYAEQQL 390 (430)
Q Consensus 348 q~~iL---~~~~~~~~i---tHgG~~s~~eal~~GvP~v~~P~~~DQ~~ 390 (430)
...-+ .-+++ |. --||..|+.|+|+.|||||.++ ++||.
T Consensus 499 ~~~h~a~~~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~Fa 543 (620)
T COG3914 499 NEDHRARYGIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQFA 543 (620)
T ss_pred CHHHHHhhchhhe--eeecccCCCccchHHHHHhcCceeeec--cHHHH
Confidence 55444 34444 54 3689999999999999999987 66663
No 111
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=95.67 E-value=0.16 Score=48.63 Aligned_cols=77 Identities=17% Similarity=0.065 Sum_probs=51.4
Q ss_pred CceEEEecc-chhhhhccCceeEEE--ec--cCchhHHHHHHhCCceeecccccccchhHHHHhhhhceeEEeecccccC
Q 043290 338 GRGMICGWV-PQVEILAHKAIGGFV--SH--CGWNSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDLRLDYRVG 412 (430)
Q Consensus 338 ~~~~v~~~~-pq~~iL~~~~~~~~i--tH--gG~~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~~~~~~ 412 (430)
+++.+.++. .-..++..+++ +| ++ |-.++++||+++|+|+|+....+ +...+.+. ..|..++.
T Consensus 255 ~~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~g----~~e~i~~~-~~g~~~~~----- 322 (374)
T TIGR03088 255 HLVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAVGG----NPELVQHG-VTGALVPP----- 322 (374)
T ss_pred ceEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCCCC----cHHHhcCC-CceEEeCC-----
Confidence 455555543 24577888888 55 33 44569999999999999976533 34344443 45766653
Q ss_pred CcccCHhHHHHHHHHhh
Q 043290 413 SDLVMACDIESAVRCLM 429 (430)
Q Consensus 413 ~~~~~~~~l~~ai~~vl 429 (430)
-+.++++++|.+++
T Consensus 323 ---~d~~~la~~i~~l~ 336 (374)
T TIGR03088 323 ---GDAVALARALQPYV 336 (374)
T ss_pred ---CCHHHHHHHHHHHH
Confidence 37788888888775
No 112
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=95.32 E-value=0.33 Score=48.26 Aligned_cols=80 Identities=15% Similarity=0.072 Sum_probs=55.4
Q ss_pred cCceEEEeccchhhhhccCceeEEEec----cCchhHHHHHHhCCceeecccccccchhHHHHhhh----hc-eeEEeec
Q 043290 337 KGRGMICGWVPQVEILAHKAIGGFVSH----CGWNSILESLWYGVPIATWPIYAEQQLNAFRMVKE----QG-LALDLRL 407 (430)
Q Consensus 337 ~~~~~v~~~~pq~~iL~~~~~~~~itH----gG~~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~----~G-~G~~~~~ 407 (430)
.+|+.+.+...-..+++.+++ +|.- |--++++||+++|+|+|+-. .......+.+. +| .|..++
T Consensus 353 ~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVatd----~g~~~elv~~~~~~~~g~~G~lv~- 425 (475)
T cd03813 353 EDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVATD----VGSCRELIEGADDEALGPAGEVVP- 425 (475)
T ss_pred CCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEECC----CCChHHHhcCCcccccCCceEEEC-
Confidence 468888887777788888888 5433 33468999999999999953 33444444431 11 576655
Q ss_pred ccccCCcccCHhHHHHHHHHhhC
Q 043290 408 DYRVGSDLVMACDIESAVRCLMD 430 (430)
Q Consensus 408 ~~~~~~~~~~~~~l~~ai~~vl~ 430 (430)
.-+.++++++|.++++
T Consensus 426 -------~~d~~~la~ai~~ll~ 441 (475)
T cd03813 426 -------PADPEALARAILRLLK 441 (475)
T ss_pred -------CCCHHHHHHHHHHHhc
Confidence 3478899999988763
No 113
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=95.10 E-value=0.029 Score=41.93 Aligned_cols=50 Identities=14% Similarity=0.211 Sum_probs=41.2
Q ss_pred HHHHhhcCCCCcEEEEeecCCccC---CH--HHHHHHHHHHHhCCCcEEEEEecC
Q 043290 261 IFQWLDDLAESSVVFLCFGSSGSF---DV--AQVKEIAIGLERSGYNFLWSLRVS 310 (430)
Q Consensus 261 l~~~l~~~~~~~vVyvsfGS~~~~---~~--~~~~~~~~al~~~~~~~vw~~~~~ 310 (430)
+..|+...++++.|.||+||.... .. ..+..++++++++|..+|.++...
T Consensus 30 ~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~ 84 (97)
T PF06722_consen 30 VPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAA 84 (97)
T ss_dssp EEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTC
T ss_pred CCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHH
Confidence 345888888899999999997632 22 478889999999999999999765
No 114
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=94.85 E-value=0.3 Score=46.78 Aligned_cols=75 Identities=17% Similarity=0.077 Sum_probs=49.0
Q ss_pred CceEEEeccchhhh---hccCceeEEE------eccCc-hhHHHHHHhCCceeecccccccchhHHHHhhhhceeEEeec
Q 043290 338 GRGMICGWVPQVEI---LAHKAIGGFV------SHCGW-NSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDLRL 407 (430)
Q Consensus 338 ~~~~v~~~~pq~~i---L~~~~~~~~i------tHgG~-~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~ 407 (430)
+|+.+.+++|+.++ +.++++.++- +.++. +.+.|++++|+|+|+.++ ...+... + |..+..
T Consensus 254 ~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~~~~-~-~~~~~~ 324 (373)
T cd04950 254 PNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVRRYE-D-EVVLIA 324 (373)
T ss_pred CCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHHhhc-C-cEEEeC
Confidence 68999999997765 6678873321 22332 458999999999998763 1222222 3 332322
Q ss_pred ccccCCcccCHhHHHHHHHHhh
Q 043290 408 DYRVGSDLVMACDIESAVRCLM 429 (430)
Q Consensus 408 ~~~~~~~~~~~~~l~~ai~~vl 429 (430)
-+.+++.++|++++
T Consensus 325 --------~d~~~~~~ai~~~l 338 (373)
T cd04950 325 --------DDPEEFVAAIEKAL 338 (373)
T ss_pred --------CCHHHHHHHHHHHH
Confidence 27889999988864
No 115
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=94.84 E-value=0.35 Score=46.20 Aligned_cols=82 Identities=12% Similarity=0.069 Sum_probs=54.6
Q ss_pred cCceEEEeccc-hhhhhccCceeEEEec--cCchhHHHHHHhCCceeecccccccchhHHHHhhhhceeEEeecccccCC
Q 043290 337 KGRGMICGWVP-QVEILAHKAIGGFVSH--CGWNSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDLRLDYRVGS 413 (430)
Q Consensus 337 ~~~~~v~~~~p-q~~iL~~~~~~~~itH--gG~~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~~~~~~~ 413 (430)
++++.+.++.+ -..++..+++-++.++ |...+++||+++|+|+|+..... .....+.+. ..|..++
T Consensus 260 ~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~~-~~G~lv~------- 328 (372)
T cd04949 260 EDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIEDG-ENGYLVP------- 328 (372)
T ss_pred cceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHcccC-CCceEeC-------
Confidence 34677776554 3456888888555554 33558999999999999965421 123334443 5676665
Q ss_pred cccCHhHHHHHHHHhhC
Q 043290 414 DLVMACDIESAVRCLMD 430 (430)
Q Consensus 414 ~~~~~~~l~~ai~~vl~ 430 (430)
.-+.++++++|.++++
T Consensus 329 -~~d~~~la~~i~~ll~ 344 (372)
T cd04949 329 -KGDIEALAEAIIELLN 344 (372)
T ss_pred -CCcHHHHHHHHHHHHc
Confidence 3478999999988763
No 116
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=94.80 E-value=4.4 Score=39.56 Aligned_cols=77 Identities=14% Similarity=0.038 Sum_probs=51.3
Q ss_pred cCceEEEeccchhh---hhccCceeEEEe-----ccCchhHHHHHHhCCceeecccccccchhHHHHh---hhhceeEEe
Q 043290 337 KGRGMICGWVPQVE---ILAHKAIGGFVS-----HCGWNSILESLWYGVPIATWPIYAEQQLNAFRMV---KEQGLALDL 405 (430)
Q Consensus 337 ~~~~~v~~~~pq~~---iL~~~~~~~~it-----HgG~~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~---~~~G~G~~~ 405 (430)
.+++.+.+++|+.+ +|..+++ +|+ |-| .++.||+++|+|+|+.-..+.-.+ .+. +. ..|...
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fg-i~~lEAMa~G~pvIa~~~ggp~~~---iv~~~~~g-~~G~l~ 376 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFG-IGVVEYMAAGLIPLAHASGGPLLD---IVVPWDGG-PTGFLA 376 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcc-cHHHHHHHcCCcEEEEcCCCCchh---eeeccCCC-CceEEe
Confidence 46889999999775 6677777 553 333 388999999999998664332111 111 22 456542
Q ss_pred ecccccCCcccCHhHHHHHHHHhhC
Q 043290 406 RLDYRVGSDLVMACDIESAVRCLMD 430 (430)
Q Consensus 406 ~~~~~~~~~~~~~~~l~~ai~~vl~ 430 (430)
. ++++++++|.++++
T Consensus 377 ---------~-d~~~la~ai~~ll~ 391 (419)
T cd03806 377 ---------S-TAEEYAEAIEKILS 391 (419)
T ss_pred ---------C-CHHHHHHHHHHHHh
Confidence 1 68899999988763
No 117
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=94.55 E-value=0.59 Score=45.22 Aligned_cols=76 Identities=25% Similarity=0.267 Sum_probs=52.6
Q ss_pred CceEEEeccch-hhhhccCceeEEE--ec--cCch-hHHHHHHhCCceeecccccccchhHHHHhhhhceeEEeeccccc
Q 043290 338 GRGMICGWVPQ-VEILAHKAIGGFV--SH--CGWN-SILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDLRLDYRV 411 (430)
Q Consensus 338 ~~~~v~~~~pq-~~iL~~~~~~~~i--tH--gG~~-s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~~~~~ 411 (430)
.++.+.+++++ ..++.++++ +| ++ .|.+ .+.||+++|+|+|+.+...+.. .... |.|..+. +
T Consensus 280 ~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~~~~-~~g~lv~-~--- 347 (397)
T TIGR03087 280 PGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----DALP-GAELLVA-A--- 347 (397)
T ss_pred CCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCcccccc-----cccC-CcceEeC-C---
Confidence 57888888884 466788888 55 32 4543 6999999999999988643221 1223 5666554 3
Q ss_pred CCcccCHhHHHHHHHHhhC
Q 043290 412 GSDLVMACDIESAVRCLMD 430 (430)
Q Consensus 412 ~~~~~~~~~l~~ai~~vl~ 430 (430)
+.++++++|.++++
T Consensus 348 -----~~~~la~ai~~ll~ 361 (397)
T TIGR03087 348 -----DPADFAAAILALLA 361 (397)
T ss_pred -----CHHHHHHHHHHHHc
Confidence 67889999988763
No 118
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.50 E-value=0.16 Score=50.00 Aligned_cols=122 Identities=22% Similarity=0.269 Sum_probs=79.4
Q ss_pred CCcEEEEeecCCccCCHHHHHHHHHHHHhCCCcEEEEEecCCCCCccccccccCCCCCCChhHHH------hhcCceEEE
Q 043290 270 ESSVVFLCFGSSGSFDVAQVKEIAIGLERSGYNFLWSLRVSCPKDEASAHRYVTNNGVFPEGFLE------RIKGRGMIC 343 (430)
Q Consensus 270 ~~~vVyvsfGS~~~~~~~~~~~~~~al~~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~v~ 343 (430)
+..+||.+|--..-.+|+.++.-++-|++.+..++|..+..... + ..|.. ..++++.+.
T Consensus 757 ~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~g-----------e----~rf~ty~~~~Gl~p~riifs 821 (966)
T KOG4626|consen 757 EDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVG-----------E----QRFRTYAEQLGLEPDRIIFS 821 (966)
T ss_pred CCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccc-----------h----HHHHHHHHHhCCCccceeec
Confidence 45699999988889999999999999999999999998864110 0 12211 124566666
Q ss_pred eccchhhhhcc-----CceeEEEeccCchhHHHHHHhCCceeecccccccchhHHHHhhhhceeEEeec
Q 043290 344 GWVPQVEILAH-----KAIGGFVSHCGWNSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDLRL 407 (430)
Q Consensus 344 ~~~pq~~iL~~-----~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~ 407 (430)
+-+...+=..+ ..+.-+.++ |..|.++.|++|||||.+|.-.---..|.-....+|+|-.+.+
T Consensus 822 ~va~k~eHvrr~~LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hliak 889 (966)
T KOG4626|consen 822 PVAAKEEHVRRGQLADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLIAK 889 (966)
T ss_pred cccchHHHHHhhhhhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHHhh
Confidence 55553332222 222224444 7889999999999999999754333333333333588864443
No 119
>PHA01633 putative glycosyl transferase group 1
Probab=94.44 E-value=1.5 Score=41.16 Aligned_cols=82 Identities=13% Similarity=0.142 Sum_probs=52.6
Q ss_pred cCceEEE---eccchh---hhhccCceeEEEec---cCc-hhHHHHHHhCCceeeccc------cccc------chhHHH
Q 043290 337 KGRGMIC---GWVPQV---EILAHKAIGGFVSH---CGW-NSILESLWYGVPIATWPI------YAEQ------QLNAFR 394 (430)
Q Consensus 337 ~~~~~v~---~~~pq~---~iL~~~~~~~~itH---gG~-~s~~eal~~GvP~v~~P~------~~DQ------~~~a~r 394 (430)
++++.+. +++++. .+++.+++ ||.- =|+ .+++||+++|+|+|+.-. .+|+ .++...
T Consensus 200 ~~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~ 277 (335)
T PHA01633 200 PANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEE 277 (335)
T ss_pred CCcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHH
Confidence 4577877 455654 56777887 7652 343 478899999999998633 3333 222222
Q ss_pred Hh--hhhceeEEeecccccCCcccCHhHHHHHHHHhh
Q 043290 395 MV--KEQGLALDLRLDYRVGSDLVMACDIESAVRCLM 429 (430)
Q Consensus 395 v~--~~~G~G~~~~~~~~~~~~~~~~~~l~~ai~~vl 429 (430)
.. +. |.|..++ ..++++++++|.+++
T Consensus 278 ~~~~~~-g~g~~~~--------~~d~~~la~ai~~~~ 305 (335)
T PHA01633 278 YYDKEH-GQKWKIH--------KFQIEDMANAIILAF 305 (335)
T ss_pred hcCccc-Cceeeec--------CCCHHHHHHHHHHHH
Confidence 22 23 5565544 569999999998874
No 120
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=93.83 E-value=1.2 Score=44.41 Aligned_cols=86 Identities=10% Similarity=0.101 Sum_probs=54.5
Q ss_pred cCceEEEeccchhhhhccCceeEEEe---ccCc-hhHHHHHHhCCceeecccccccchhHHHHhhhhceeEEeecccccC
Q 043290 337 KGRGMICGWVPQVEILAHKAIGGFVS---HCGW-NSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDLRLDYRVG 412 (430)
Q Consensus 337 ~~~~~v~~~~pq~~iL~~~~~~~~it---HgG~-~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~~~~~~ 412 (430)
.+++.+.++.+...++..+++ ||. .=|+ .+++||+++|+|+|+.-..+ .....|.+. .-|..++.+.+.
T Consensus 375 ~~~V~f~G~~~~~~~~~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~---G~~eiI~~g-~nG~lv~~~~~~- 447 (500)
T TIGR02918 375 QDYIHLKGHRNLSEVYKDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVNY---GNPTFIEDN-KNGYLIPIDEEE- 447 (500)
T ss_pred CCeEEEcCCCCHHHHHHhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCCC---CCHHHccCC-CCEEEEeCCccc-
Confidence 356888899998999999998 554 3343 58999999999999976531 122333332 346655521000
Q ss_pred CcccC-HhHHHHHHHHhh
Q 043290 413 SDLVM-ACDIESAVRCLM 429 (430)
Q Consensus 413 ~~~~~-~~~l~~ai~~vl 429 (430)
...-+ .++++++|.+++
T Consensus 448 ~d~~~~~~~la~~I~~ll 465 (500)
T TIGR02918 448 DDEDQIITALAEKIVEYF 465 (500)
T ss_pred cchhHHHHHHHHHHHHHh
Confidence 00011 677888887765
No 121
>PRK14098 glycogen synthase; Provisional
Probab=93.63 E-value=0.76 Score=45.80 Aligned_cols=84 Identities=5% Similarity=-0.105 Sum_probs=53.4
Q ss_pred hhcCceEEEeccchh---hhhccCceeEEEecc---Cc-hhHHHHHHhCCceeecccccccchhHHHHhhhhceeEEeec
Q 043290 335 RIKGRGMICGWVPQV---EILAHKAIGGFVSHC---GW-NSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDLRL 407 (430)
Q Consensus 335 ~~~~~~~v~~~~pq~---~iL~~~~~~~~itHg---G~-~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~ 407 (430)
+.++++.+....+.. .+++.+++ |+.-. |. .+.+||+++|+|.|+....+-.........+. +-|..++
T Consensus 359 ~~~~~V~~~g~~~~~~~~~~~a~aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~~~~-~~G~l~~- 434 (489)
T PRK14098 359 EHPEQVSVQTEFTDAFFHLAIAGLDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVSEDK-GSGFIFH- 434 (489)
T ss_pred HCCCCEEEEEecCHHHHHHHHHhCCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeecCCCCC-CceeEeC-
Confidence 345688888888875 57888888 66432 22 37889999999988876543211111111123 5666555
Q ss_pred ccccCCcccCHhHHHHHHHHhh
Q 043290 408 DYRVGSDLVMACDIESAVRCLM 429 (430)
Q Consensus 408 ~~~~~~~~~~~~~l~~ai~~vl 429 (430)
.-++++++++|.+++
T Consensus 435 -------~~d~~~la~ai~~~l 449 (489)
T PRK14098 435 -------DYTPEALVAKLGEAL 449 (489)
T ss_pred -------CCCHHHHHHHHHHHH
Confidence 347888888887654
No 122
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=93.61 E-value=0.2 Score=40.91 Aligned_cols=96 Identities=14% Similarity=0.187 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhCCCCeEEEEEecCCCCChhhHHhhhhccCCCCCeEEEeCCCCCCCCCCCCCCCHHHHHHHHHHhhhhhH
Q 043290 19 STLEFAKHLTDRDDRISVTLLSMKLAVAPWVDAYAKSLTDSQPRICIIDLPPVDPPLPDVLKKSPEYFLSLVVESHLPNV 98 (430)
Q Consensus 19 P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (430)
=+..|+++|+++||+ |+++++..... .......++.+..++...... ... .+. ....+
T Consensus 6 ~~~~l~~~L~~~G~~--V~v~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~------~~~-~~~-----~~~~~ 63 (160)
T PF13579_consen 6 YVRELARALAARGHE--VTVVTPQPDPE--------DDEEEEDGVRVHRLPLPRRPW------PLR-LLR-----FLRRL 63 (160)
T ss_dssp HHHHHHHHHHHTT-E--EEEEEE---GG--------G-SEEETTEEEEEE--S-SSS------GGG-HCC-----HHHHH
T ss_pred HHHHHHHHHHHCCCE--EEEEecCCCCc--------ccccccCCceEEeccCCccch------hhh-hHH-----HHHHH
Confidence 367899999999999 88888652211 101112456666655321110 000 000 11122
Q ss_pred HHHHHHhhccCCCCceEEEEcCCcc-hHHHHHH-hcCCceEEEe
Q 043290 99 KNIVSSRANSGSLQVTGLVLDFFCV-SMVDIAK-ELSLPSYIFL 140 (430)
Q Consensus 99 ~~~l~~~~~~~~~~~D~vV~D~~~~-~~~~~A~-~lgiP~v~~~ 140 (430)
...+ .....++|+|.+..... ....+++ ..++|++...
T Consensus 64 ~~~l----~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~ 103 (160)
T PF13579_consen 64 RRLL----AARRERPDVVHAHSPTAGLVAALARRRRGIPLVVTV 103 (160)
T ss_dssp HHHC----HHCT---SEEEEEHHHHHHHHHHHHHHHT--EEEE-
T ss_pred HHHH----hhhccCCeEEEecccchhHHHHHHHHccCCcEEEEE
Confidence 2222 11235899998776332 2334445 7899977665
No 123
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=93.40 E-value=0.68 Score=45.99 Aligned_cols=135 Identities=11% Similarity=0.021 Sum_probs=71.8
Q ss_pred cEEEEeecCCc-cCCHHHHHHHHHHHHhCCCcEEEEEecCCCCCccccccccCCCCCCChhHHHhhcCceEEEeccchh-
Q 043290 272 SVVFLCFGSSG-SFDVAQVKEIAIGLERSGYNFLWSLRVSCPKDEASAHRYVTNNGVFPEGFLERIKGRGMICGWVPQV- 349 (430)
Q Consensus 272 ~vVyvsfGS~~-~~~~~~~~~~~~al~~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~pq~- 349 (430)
..+++..|.+. .-..+.+.+.+..+.+.+.++++. |.+.+. ....+ ..+.++.+.++.+....++.
T Consensus 291 ~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~-G~g~~~----------~~~~l-~~~~~~~~~~v~~~~~~~~~~ 358 (473)
T TIGR02095 291 VPLFGVISRLTQQKGVDLLLAALPELLELGGQLVVL-GTGDPE----------LEEAL-RELAERYPGNVRVIIGYDEAL 358 (473)
T ss_pred CCEEEEEecCccccChHHHHHHHHHHHHcCcEEEEE-CCCCHH----------HHHHH-HHHHHHCCCcEEEEEcCCHHH
Confidence 45666677765 223344444444444445666655 332100 00001 11222334566666555654
Q ss_pred --hhhccCceeEEEe---ccCch-hHHHHHHhCCceeeccccc--ccchhHHHHhhhhceeEEeecccccCCcccCHhHH
Q 043290 350 --EILAHKAIGGFVS---HCGWN-SILESLWYGVPIATWPIYA--EQQLNAFRMVKEQGLALDLRLDYRVGSDLVMACDI 421 (430)
Q Consensus 350 --~iL~~~~~~~~it---HgG~~-s~~eal~~GvP~v~~P~~~--DQ~~~a~rv~~~~G~G~~~~~~~~~~~~~~~~~~l 421 (430)
.+++.+++ ++. +-|.| +.+||+++|+|+|+....+ |.-.+..--... +.|..+. .-+++++
T Consensus 359 ~~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~-~~G~l~~--------~~d~~~l 427 (473)
T TIGR02095 359 AHLIYAGADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAES-GTGFLFE--------EYDPGAL 427 (473)
T ss_pred HHHHHHhCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCCC-CceEEeC--------CCCHHHH
Confidence 46778887 653 22444 7899999999999876533 222111000111 5666655 3478888
Q ss_pred HHHHHHhh
Q 043290 422 ESAVRCLM 429 (430)
Q Consensus 422 ~~ai~~vl 429 (430)
+++|.+++
T Consensus 428 a~~i~~~l 435 (473)
T TIGR02095 428 LAALSRAL 435 (473)
T ss_pred HHHHHHHH
Confidence 88888765
No 124
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=93.04 E-value=0.71 Score=45.84 Aligned_cols=82 Identities=15% Similarity=0.061 Sum_probs=49.3
Q ss_pred cCceEEEeccchh---hhhccCceeEEEec---cCc-hhHHHHHHhCCceeeccccc--ccchhHHHHhhhhceeEEeec
Q 043290 337 KGRGMICGWVPQV---EILAHKAIGGFVSH---CGW-NSILESLWYGVPIATWPIYA--EQQLNAFRMVKEQGLALDLRL 407 (430)
Q Consensus 337 ~~~~~v~~~~pq~---~iL~~~~~~~~itH---gG~-~s~~eal~~GvP~v~~P~~~--DQ~~~a~rv~~~~G~G~~~~~ 407 (430)
.+|+.+..-.++. .++..+++ ++.- -|+ .+.+||+++|+|+|+....+ |.-.+...-.+. |.|..++.
T Consensus 350 ~~~v~~~~~~~~~~~~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~-~~G~~~~~ 426 (476)
T cd03791 350 PGRVAVLIGYDEALAHLIYAGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGE-GTGFVFEG 426 (476)
T ss_pred CCcEEEEEeCCHHHHHHHHHhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCC-CCeEEeCC
Confidence 4577665334443 36777887 5532 122 37899999999999876533 221111111122 46776663
Q ss_pred ccccCCcccCHhHHHHHHHHhh
Q 043290 408 DYRVGSDLVMACDIESAVRCLM 429 (430)
Q Consensus 408 ~~~~~~~~~~~~~l~~ai~~vl 429 (430)
-+.++++++|++++
T Consensus 427 --------~~~~~l~~~i~~~l 440 (476)
T cd03791 427 --------YNADALLAALRRAL 440 (476)
T ss_pred --------CCHHHHHHHHHHHH
Confidence 46888888888765
No 125
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=92.52 E-value=0.92 Score=36.28 Aligned_cols=101 Identities=16% Similarity=0.193 Sum_probs=57.9
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecCCCCChhhHHhhhhccCCCCCeEEEeCCCCCCCCCCCCCCCHHH
Q 043290 6 LIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMKLAVAPWVDAYAKSLTDSQPRICIIDLPPVDPPLPDVLKKSPEY 85 (430)
Q Consensus 6 i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 85 (430)
|+++.-....| ...+++.|.++||+ |++++....... . ....++.+..++... .....
T Consensus 2 Il~i~~~~~~~---~~~~~~~L~~~g~~--V~ii~~~~~~~~----~-----~~~~~i~~~~~~~~~--------k~~~~ 59 (139)
T PF13477_consen 2 ILLIGNTPSTF---IYNLAKELKKRGYD--VHIITPRNDYEK----Y-----EIIEGIKVIRLPSPR--------KSPLN 59 (139)
T ss_pred EEEEecCcHHH---HHHHHHHHHHCCCE--EEEEEcCCCchh----h-----hHhCCeEEEEecCCC--------CccHH
Confidence 67777666555 56889999999999 889997532111 1 113567777764220 11111
Q ss_pred HHHHHHHhhhhhHHHHHHHhhccCCCCceEEEEcCCcch---HHHHHHhcC-CceEEEe
Q 043290 86 FLSLVVESHLPNVKNIVSSRANSGSLQVTGLVLDFFCVS---MVDIAKELS-LPSYIFL 140 (430)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vV~D~~~~~---~~~~A~~lg-iP~v~~~ 140 (430)
.+ . .. .+...+.+ .+||+|.+...... +..++...+ +|.+...
T Consensus 60 ~~----~-~~-~l~k~ik~------~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~ 106 (139)
T PF13477_consen 60 YI----K-YF-RLRKIIKK------EKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTV 106 (139)
T ss_pred HH----H-HH-HHHHHhcc------CCCCEEEEecCChHHHHHHHHHHHcCCCCEEEEe
Confidence 11 1 11 33333333 38999987765542 234556678 8876443
No 126
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=92.20 E-value=7.9 Score=35.97 Aligned_cols=80 Identities=14% Similarity=0.063 Sum_probs=50.4
Q ss_pred chhhhhccCceeEEEeccCchhHHHHHHhCCceeecccccccch-h---HHHHhhhhceeEEeecc--ccc---CCcccC
Q 043290 347 PQVEILAHKAIGGFVSHCGWNSILESLWYGVPIATWPIYAEQQL-N---AFRMVKEQGLALDLRLD--YRV---GSDLVM 417 (430)
Q Consensus 347 pq~~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~DQ~~-~---a~rv~~~~G~G~~~~~~--~~~---~~~~~~ 417 (430)
|....|+.++. ++||=--.+.+.||+..|+|+.+++.-. +.. . ...+.+. |.-...... .+. -...-.
T Consensus 221 Py~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~-~~~r~~r~~~~L~~~-g~~r~~~~~~~~~~~~~~~pl~e 297 (311)
T PF06258_consen 221 PYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPG-RSGRFRRFHQSLEER-GAVRPFTGWRDLEQWTPYEPLDE 297 (311)
T ss_pred cHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCC-cchHHHHHHHHHHHC-CCEEECCCcccccccccCCCccH
Confidence 67788888886 6777777889999999999999999876 332 1 2233443 554443322 010 001123
Q ss_pred HhHHHHHHHHhh
Q 043290 418 ACDIESAVRCLM 429 (430)
Q Consensus 418 ~~~l~~ai~~vl 429 (430)
++.+++.|.+-+
T Consensus 298 t~r~A~~i~~r~ 309 (311)
T PF06258_consen 298 TDRVAAEIRERL 309 (311)
T ss_pred HHHHHHHHHHHh
Confidence 477777777644
No 127
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=91.94 E-value=3.4 Score=33.18 Aligned_cols=40 Identities=23% Similarity=0.170 Sum_probs=36.7
Q ss_pred CCCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecC
Q 043290 1 MKKAELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMK 42 (430)
Q Consensus 1 m~~~~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (430)
||+++|++.+.++-+|-.-..-++..|.++|.+ |+.+-..
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~e--Vi~LG~~ 40 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEAGFE--VINLGVM 40 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHCCCE--EEECCCC
Confidence 899999999999999999999999999999966 8777754
No 128
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=89.16 E-value=4.8 Score=37.55 Aligned_cols=135 Identities=13% Similarity=0.070 Sum_probs=75.5
Q ss_pred CCcEEEEeecC-Cc--cCCHHHHHHHHHHHHhCCCcEEEEEecCCCCCccccccccCCCCCCChhHHHhhcCceEEEec-
Q 043290 270 ESSVVFLCFGS-SG--SFDVAQVKEIAIGLERSGYNFLWSLRVSCPKDEASAHRYVTNNGVFPEGFLERIKGRGMICGW- 345 (430)
Q Consensus 270 ~~~vVyvsfGS-~~--~~~~~~~~~~~~al~~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~- 345 (430)
+++.|.+.-|+ .. ..+.+.+.++++.|.+.+.++|+..++... ...-..+.+..+ +..+.+-
T Consensus 178 ~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~e-------------~~~~~~i~~~~~-~~~l~g~~ 243 (319)
T TIGR02193 178 PAPYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDAE-------------KQRAERIAEALP-GAVVLPKM 243 (319)
T ss_pred CCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHHH-------------HHHHHHHHhhCC-CCeecCCC
Confidence 34555555554 33 667788889998887767787766443210 000011211111 1223322
Q ss_pred -cc-hhhhhccCceeEEEeccCchhHHHHHHhCCceeecccccccchhHHHHhhhhceeE-EeecccccCCcccCHhHHH
Q 043290 346 -VP-QVEILAHKAIGGFVSHCGWNSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLAL-DLRLDYRVGSDLVMACDIE 422 (430)
Q Consensus 346 -~p-q~~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~-~~~~~~~~~~~~~~~~~l~ 422 (430)
++ -.++++++++ +|+. -.|-++=|.+.|+|+|++ ++ +.+..+..= +|-.. .+... .-..++++++.
T Consensus 244 sL~el~ali~~a~l--~I~~-DSgp~HlAaa~g~P~i~l--fg--~t~p~~~~P-~~~~~~~~~~~---~~~~I~~~~V~ 312 (319)
T TIGR02193 244 SLAEVAALLAGADA--VVGV-DTGLTHLAAALDKPTVTL--YG--ATDPGRTGG-YGKPNVALLGE---SGANPTPDEVL 312 (319)
T ss_pred CHHHHHHHHHcCCE--EEeC-CChHHHHHHHcCCCEEEE--EC--CCCHhhccc-CCCCceEEccC---ccCCCCHHHHH
Confidence 22 4567888887 8886 677888899999999975 22 112222110 12111 11110 11289999999
Q ss_pred HHHHHhh
Q 043290 423 SAVRCLM 429 (430)
Q Consensus 423 ~ai~~vl 429 (430)
+||+++|
T Consensus 313 ~ai~~~~ 319 (319)
T TIGR02193 313 AALEELL 319 (319)
T ss_pred HHHHhhC
Confidence 9999876
No 129
>PRK10125 putative glycosyl transferase; Provisional
Probab=88.26 E-value=4.7 Score=39.16 Aligned_cols=90 Identities=16% Similarity=0.109 Sum_probs=50.1
Q ss_pred EEEEeecCCccCCHHHHHHHHHHHHhCCCcE-EEEEecCCCCCccccccccCCCCCCChhHHHhhcCceEEEecc-ch--
Q 043290 273 VVFLCFGSSGSFDVAQVKEIAIGLERSGYNF-LWSLRVSCPKDEASAHRYVTNNGVFPEGFLERIKGRGMICGWV-PQ-- 348 (430)
Q Consensus 273 vVyvsfGS~~~~~~~~~~~~~~al~~~~~~~-vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-pq-- 348 (430)
.+++..|.........+..+++|+...+..+ ++.+|.... .. ..++...++. ++
T Consensus 242 ~~il~v~~~~~~~~Kg~~~li~A~~~l~~~~~L~ivG~g~~--------------~~--------~~~v~~~g~~~~~~~ 299 (405)
T PRK10125 242 PKIAVVAHDLRYDGKTDQQLVREMMALGDKIELHTFGKFSP--------------FT--------AGNVVNHGFETDKRK 299 (405)
T ss_pred CEEEEEEeccccCCccHHHHHHHHHhCCCCeEEEEEcCCCc--------------cc--------ccceEEecCcCCHHH
Confidence 3444455422222234567888888765443 344554310 00 1234444544 23
Q ss_pred -hhhhccCceeEEEec----cCchhHHHHHHhCCceeeccccc
Q 043290 349 -VEILAHKAIGGFVSH----CGWNSILESLWYGVPIATWPIYA 386 (430)
Q Consensus 349 -~~iL~~~~~~~~itH----gG~~s~~eal~~GvP~v~~P~~~ 386 (430)
..++..+++ ||.- |--++++||+++|+|+|+....+
T Consensus 300 l~~~y~~aDv--fV~pS~~Egfp~vilEAmA~G~PVVat~~gG 340 (405)
T PRK10125 300 LMSALNQMDA--LVFSSRVDNYPLILCEALSIGVPVIATHSDA 340 (405)
T ss_pred HHHHHHhCCE--EEECCccccCcCHHHHHHHcCCCEEEeCCCC
Confidence 334555776 6642 33468999999999999987754
No 130
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=88.00 E-value=1.1 Score=42.21 Aligned_cols=65 Identities=18% Similarity=0.275 Sum_probs=43.9
Q ss_pred cCceEEEeccchhhhhccC--ceeEEEec-------cCc------hhHHHHHHhCCceeecccccccchhHHHHhhhhce
Q 043290 337 KGRGMICGWVPQVEILAHK--AIGGFVSH-------CGW------NSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGL 401 (430)
Q Consensus 337 ~~~~~v~~~~pq~~iL~~~--~~~~~itH-------gG~------~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~ 401 (430)
.+|+.+.+|+|++++..+- +.+++... +.+ +-+.+++++|+|+|+.. +...+..|.+. ++
T Consensus 206 ~~~V~f~G~~~~eel~~~l~~~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~----~~~~~~~V~~~-~~ 280 (333)
T PRK09814 206 SANISYKGWFDPEELPNELSKGFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWS----KAAIADFIVEN-GL 280 (333)
T ss_pred CCCeEEecCCCHHHHHHHHhcCcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEECC----CccHHHHHHhC-Cc
Confidence 3589999999998875421 33332221 111 12677899999999864 56677777776 99
Q ss_pred eEEee
Q 043290 402 ALDLR 406 (430)
Q Consensus 402 G~~~~ 406 (430)
|..++
T Consensus 281 G~~v~ 285 (333)
T PRK09814 281 GFVVD 285 (333)
T ss_pred eEEeC
Confidence 98765
No 131
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=87.50 E-value=7.9 Score=32.36 Aligned_cols=93 Identities=12% Similarity=0.125 Sum_probs=50.5
Q ss_pred hCCCCeEEEEEecCCCCChhhHHhhhhccCCCCCeEEEeCCCCCCCCCCCCCCCH-HHHHHHHHHhhhhhHHHHHHHhhc
Q 043290 29 DRDDRISVTLLSMKLAVAPWVDAYAKSLTDSQPRICIIDLPPVDPPLPDVLKKSP-EYFLSLVVESHLPNVKNIVSSRAN 107 (430)
Q Consensus 29 ~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~ 107 (430)
++||+ |++++....... .++++.+.+......... ..+ ...+...+... +.+...+.++.+
T Consensus 1 q~gh~--v~fl~~~~~~~~------------~~GV~~~~y~~~~~~~~~---~~~~~~~~e~~~~rg-~av~~a~~~L~~ 62 (171)
T PF12000_consen 1 QRGHE--VVFLTERKRPPI------------PPGVRVVRYRPPRGPTPG---THPYVRDFEAAVLRG-QAVARAARQLRA 62 (171)
T ss_pred CCCCE--EEEEecCCCCCC------------CCCcEEEEeCCCCCCCCC---CCcccccHHHHHHHH-HHHHHHHHHHHH
Confidence 47999 999995421110 146777666542211110 111 11122211122 233344555554
Q ss_pred cCCCCceEEEEcCCcchHHHHHHhc-CCceEEEe
Q 043290 108 SGSLQVTGLVLDFFCVSMVDIAKEL-SLPSYIFL 140 (430)
Q Consensus 108 ~~~~~~D~vV~D~~~~~~~~~A~~l-giP~v~~~ 140 (430)
+ .-.||+||...-...++-+-..+ ++|.+.++
T Consensus 63 ~-Gf~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~ 95 (171)
T PF12000_consen 63 Q-GFVPDVIIAHPGWGETLFLKDVFPDAPLIGYF 95 (171)
T ss_pred c-CCCCCEEEEcCCcchhhhHHHhCCCCcEEEEE
Confidence 3 45899999997766666677778 89988775
No 132
>PLN02501 digalactosyldiacylglycerol synthase
Probab=87.24 E-value=8.3 Score=39.76 Aligned_cols=73 Identities=11% Similarity=-0.039 Sum_probs=47.0
Q ss_pred ceEEEeccchh-hhhccCceeEEEe---ccC-chhHHHHHHhCCceeecccccccchhHHHHhhhhceeEEeecccccCC
Q 043290 339 RGMICGWVPQV-EILAHKAIGGFVS---HCG-WNSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDLRLDYRVGS 413 (430)
Q Consensus 339 ~~~v~~~~pq~-~iL~~~~~~~~it---HgG-~~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~~~~~~~ 413 (430)
++.+.++.++. ++++..++ ||. .=| -++++||+++|+|+|+.-.-+... +... +-|. +.
T Consensus 602 ~V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V~~g-~nGl-l~------- 665 (794)
T PLN02501 602 NLNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----FRSF-PNCL-TY------- 665 (794)
T ss_pred EEEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----Eeec-CCeE-ec-------
Confidence 35666777755 58888888 665 223 458999999999999987654322 1121 2222 21
Q ss_pred cccCHhHHHHHHHHhh
Q 043290 414 DLVMACDIESAVRCLM 429 (430)
Q Consensus 414 ~~~~~~~l~~ai~~vl 429 (430)
-+.++++++|.++|
T Consensus 666 --~D~EafAeAI~~LL 679 (794)
T PLN02501 666 --KTSEDFVAKVKEAL 679 (794)
T ss_pred --CCHHHHHHHHHHHH
Confidence 25777788877766
No 133
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=87.10 E-value=9 Score=38.52 Aligned_cols=64 Identities=20% Similarity=0.128 Sum_probs=43.2
Q ss_pred cCceEEEeccc-hhhhhccCceeEEEe---ccC-chhHHHHHHhCCceeecccccccchhHHHHhhhhceeEEeec
Q 043290 337 KGRGMICGWVP-QVEILAHKAIGGFVS---HCG-WNSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDLRL 407 (430)
Q Consensus 337 ~~~~~v~~~~p-q~~iL~~~~~~~~it---HgG-~~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~ 407 (430)
.+++.+.+|.. -..+|..+++ ||. .-| .+++.||+++|+|+|+.... .+...|.+. ..|..++.
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdvG----G~~EiV~dG-~nG~LVp~ 522 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPAG----GSAECFIEG-VSGFILDD 522 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCCC----CcHHHcccC-CcEEEECC
Confidence 36788887743 3456888888 775 344 56999999999999987653 344444444 55665553
No 134
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.67 E-value=1.1 Score=40.40 Aligned_cols=68 Identities=19% Similarity=0.135 Sum_probs=49.1
Q ss_pred cCceEEE-eccchhhhhccCceeEEEeccCchhHHHHHHhCCceeecccccccch--hHHHHhhhhceeEEeec
Q 043290 337 KGRGMIC-GWVPQVEILAHKAIGGFVSHCGWNSILESLWYGVPIATWPIYAEQQL--NAFRMVKEQGLALDLRL 407 (430)
Q Consensus 337 ~~~~~v~-~~~pq~~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~DQ~~--~a~rv~~~~G~G~~~~~ 407 (430)
++|..+. .|....++|.+.++ .|--.|- .+-+++--|||+|.+|-.+-|+. .|.|=.+.+|+.+.+-.
T Consensus 293 kdnc~l~lsqqsfadiLH~ada--algmAGT-AtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~ 363 (412)
T COG4370 293 KDNCSLWLSQQSFADILHAADA--ALGMAGT-ATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVR 363 (412)
T ss_pred cCceEEEEeHHHHHHHHHHHHH--HHHhccc-hHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecC
Confidence 4576665 88899999998887 4433332 23456778999999999999865 56665677788876653
No 135
>PLN02846 digalactosyldiacylglycerol synthase
Probab=85.02 E-value=17 Score=35.83 Aligned_cols=42 Identities=12% Similarity=0.028 Sum_probs=32.6
Q ss_pred EEeccchhhhhccCceeEEEec----cCchhHHHHHHhCCceeecccc
Q 043290 342 ICGWVPQVEILAHKAIGGFVSH----CGWNSILESLWYGVPIATWPIY 385 (430)
Q Consensus 342 v~~~~pq~~iL~~~~~~~~itH----gG~~s~~eal~~GvP~v~~P~~ 385 (430)
+.++.+.++++...++ ||.= +=-++++||+++|+|+|+.-..
T Consensus 288 f~G~~~~~~~~~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~ 333 (462)
T PLN02846 288 YPGRDHADPLFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHP 333 (462)
T ss_pred ECCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCcEEEecCC
Confidence 4466777779988887 8765 3346899999999999997643
No 136
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=84.62 E-value=9.1 Score=37.34 Aligned_cols=151 Identities=13% Similarity=0.170 Sum_probs=81.8
Q ss_pred HHHHhhcCCCCcEEEEeecCCcc------CCH----HHHHHHHHHHHhCCCcEEEEEecCCCCCccccccccCCCCCCCh
Q 043290 261 IFQWLDDLAESSVVFLCFGSSGS------FDV----AQVKEIAIGLERSGYNFLWSLRVSCPKDEASAHRYVTNNGVFPE 330 (430)
Q Consensus 261 l~~~l~~~~~~~vVyvsfGS~~~------~~~----~~~~~~~~al~~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (430)
+..|+.....+++|-||.-.... .+. +.+.++++.|.+.|+++++..-...... ..+.|. ....
T Consensus 224 ~~~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~~-~~~dD~-----~~~~ 297 (426)
T PRK10017 224 VQHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTGIDS-YNKDDR-----MVAL 297 (426)
T ss_pred hhhhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccCccC-CCCchH-----HHHH
Confidence 44565443345678777654321 122 2234455556566888886643221000 000000 0001
Q ss_pred hHHHhhc--CceEEE--eccchh--hhhccCceeEEEeccCchhHHHHHHhCCceeecccccccchhHHHHhhhhceeEE
Q 043290 331 GFLERIK--GRGMIC--GWVPQV--EILAHKAIGGFVSHCGWNSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALD 404 (430)
Q Consensus 331 ~~~~~~~--~~~~v~--~~~pq~--~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~ 404 (430)
.+.+..+ .+..++ .+-|.+ .+++++++ +|.. =.-++.-|+..|||.+++++ |....+ .+.. +|..-.
T Consensus 298 ~l~~~~~~~~~~~vi~~~~~~~e~~~iIs~~dl--~ig~-RlHa~I~a~~~gvP~i~i~Y--~~K~~~-~~~~-lg~~~~ 370 (426)
T PRK10017 298 NLRQHVSDPARYHVVMDELNDLEMGKILGACEL--TVGT-RLHSAIISMNFGTPAIAINY--EHKSAG-IMQQ-LGLPEM 370 (426)
T ss_pred HHHHhcccccceeEecCCCChHHHHHHHhhCCE--EEEe-cchHHHHHHHcCCCEEEeee--hHHHHH-HHHH-cCCccE
Confidence 2222222 233443 233444 78889986 6653 44578889999999999998 554444 3344 477744
Q ss_pred -eecccccCCcccCHhHHHHHHHHhhC
Q 043290 405 -LRLDYRVGSDLVMACDIESAVRCLMD 430 (430)
Q Consensus 405 -~~~~~~~~~~~~~~~~l~~ai~~vl~ 430 (430)
++.+ .++.++|.+.++++++
T Consensus 371 ~~~~~------~l~~~~Li~~v~~~~~ 391 (426)
T PRK10017 371 AIDIR------HLLDGSLQAMVADTLG 391 (426)
T ss_pred Eechh------hCCHHHHHHHHHHHHh
Confidence 3443 6788888888887753
No 137
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=84.39 E-value=9.4 Score=31.28 Aligned_cols=28 Identities=29% Similarity=0.253 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCCeEEEEEecC
Q 043290 13 GIGHLVSTLEFAKHLTDRDDRISVTLLSMK 42 (430)
Q Consensus 13 ~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (430)
..|=-.-+..|+++|+++||+ |+++++.
T Consensus 11 ~GG~e~~~~~l~~~l~~~G~~--v~v~~~~ 38 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKRGHE--VTVVSPG 38 (177)
T ss_dssp SSHHHHHHHHHHHHHHHTT-E--EEEEESS
T ss_pred CChHHHHHHHHHHHHHHCCCE--EEEEEcC
Confidence 446667889999999999999 8899876
No 138
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=84.11 E-value=7.1 Score=33.50 Aligned_cols=36 Identities=17% Similarity=0.244 Sum_probs=24.1
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecCCC
Q 043290 6 LIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMKLA 44 (430)
Q Consensus 6 i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~ 44 (430)
|++..==+. +..=+..|+++|.+.||+ |++++|..+
T Consensus 3 ILlTNDDGi-~a~Gi~aL~~~L~~~g~~--V~VvAP~~~ 38 (196)
T PF01975_consen 3 ILLTNDDGI-DAPGIRALAKALSALGHD--VVVVAPDSE 38 (196)
T ss_dssp EEEE-SS-T-TSHHHHHHHHHHTTTSSE--EEEEEESSS
T ss_pred EEEEcCCCC-CCHHHHHHHHHHHhcCCe--EEEEeCCCC
Confidence 444433333 344467899999888899 999998754
No 139
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=80.43 E-value=23 Score=27.33 Aligned_cols=35 Identities=23% Similarity=0.260 Sum_probs=31.2
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEec
Q 043290 5 ELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSM 41 (430)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~ 41 (430)
||++.+.++-.|.....-++..|.++|++ |...-.
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~--V~~lg~ 35 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFE--VIDLGV 35 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCE--EEECCC
Confidence 48999999999999999999999999988 766553
No 140
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=80.41 E-value=20 Score=33.46 Aligned_cols=29 Identities=28% Similarity=0.322 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCCeEEEEEecC
Q 043290 13 GIGHLVSTLEFAKHLTDRDDRISVTLLSMK 42 (430)
Q Consensus 13 ~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (430)
-.|-+-|.+.|...|.. +-+|.-|+++..
T Consensus 30 ~~g~vGp~~~l~~~l~~-~~eIv~TiiCGD 58 (349)
T PF07355_consen 30 REGPVGPGLMLEKALKD-DAEIVATIICGD 58 (349)
T ss_pred ccCCCChHHHHHHHhcC-CCEEEEEEEECc
Confidence 45778899999999987 446667777765
No 141
>PLN02939 transferase, transferring glycosyl groups
Probab=78.96 E-value=36 Score=36.70 Aligned_cols=83 Identities=10% Similarity=-0.007 Sum_probs=50.4
Q ss_pred cCceEEEeccchh---hhhccCceeEEEec---cC-chhHHHHHHhCCceeeccccc--ccchh--HHHHhhhhceeEEe
Q 043290 337 KGRGMICGWVPQV---EILAHKAIGGFVSH---CG-WNSILESLWYGVPIATWPIYA--EQQLN--AFRMVKEQGLALDL 405 (430)
Q Consensus 337 ~~~~~v~~~~pq~---~iL~~~~~~~~itH---gG-~~s~~eal~~GvP~v~~P~~~--DQ~~~--a~rv~~~~G~G~~~ 405 (430)
.+++.+..+.+.. .+++.+++ ||.- =| -.+.+||+++|+|.|+....+ |--.+ ...+...-+-|..+
T Consensus 836 ~drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf 913 (977)
T PLN02939 836 NNNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTF 913 (977)
T ss_pred CCeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEe
Confidence 3578888888765 47888888 7742 12 348999999999999876544 22111 11111101345544
Q ss_pred ecccccCCcccCHhHHHHHHHHhh
Q 043290 406 RLDYRVGSDLVMACDIESAVRCLM 429 (430)
Q Consensus 406 ~~~~~~~~~~~~~~~l~~ai~~vl 429 (430)
. .-+++++.++|.+++
T Consensus 914 ~--------~~D~eaLa~AL~rAL 929 (977)
T PLN02939 914 L--------TPDEQGLNSALERAF 929 (977)
T ss_pred c--------CCCHHHHHHHHHHHH
Confidence 4 346777777776654
No 142
>PLN02316 synthase/transferase
Probab=77.56 E-value=45 Score=36.41 Aligned_cols=83 Identities=12% Similarity=0.072 Sum_probs=48.9
Q ss_pred cCceEEEeccchh---hhhccCceeEEEec----cCchhHHHHHHhCCceeeccccc--ccchhHH----HHhhh--hce
Q 043290 337 KGRGMICGWVPQV---EILAHKAIGGFVSH----CGWNSILESLWYGVPIATWPIYA--EQQLNAF----RMVKE--QGL 401 (430)
Q Consensus 337 ~~~~~v~~~~pq~---~iL~~~~~~~~itH----gG~~s~~eal~~GvP~v~~P~~~--DQ~~~a~----rv~~~--~G~ 401 (430)
++++.+....+.. .+++.+++ |+.- +=-.+.+||+++|+|.|+.-..+ |.-.... +-+.. -+-
T Consensus 899 ~~rV~f~g~~de~lah~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~t 976 (1036)
T PLN02316 899 HDRARLCLTYDEPLSHLIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPN 976 (1036)
T ss_pred CCeEEEEecCCHHHHHHHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCc
Confidence 3566666444543 57888887 7742 12348999999999999865533 2221110 00000 134
Q ss_pred eEEeecccccCCcccCHhHHHHHHHHhh
Q 043290 402 ALDLRLDYRVGSDLVMACDIESAVRCLM 429 (430)
Q Consensus 402 G~~~~~~~~~~~~~~~~~~l~~ai~~vl 429 (430)
|..++ ..+++.|..+|.++|
T Consensus 977 Gflf~--------~~d~~aLa~AL~raL 996 (1036)
T PLN02316 977 GFSFD--------GADAAGVDYALNRAI 996 (1036)
T ss_pred eEEeC--------CCCHHHHHHHHHHHH
Confidence 66555 457888888887765
No 143
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=77.46 E-value=13 Score=33.79 Aligned_cols=43 Identities=23% Similarity=0.187 Sum_probs=34.8
Q ss_pred ceEEEeccchhhhhccCceeEEEeccCchhHHHHHHhCCceeeccc
Q 043290 339 RGMICGWVPQVEILAHKAIGGFVSHCGWNSILESLWYGVPIATWPI 384 (430)
Q Consensus 339 ~~~v~~~~pq~~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~P~ 384 (430)
.+.+.+-++-.++|.+++. +||-.+ ..-.||+.+|+|+++++.
T Consensus 184 ~~~~~~~~~~~~Ll~~s~~--VvtinS-tvGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 184 VVIIDDDVNLYELLEQSDA--VVTINS-TVGLEALLHGKPVIVFGR 226 (269)
T ss_pred eEEECCCCCHHHHHHhCCE--EEEECC-HHHHHHHHcCCceEEecC
Confidence 4445578899999999998 777754 477899999999999774
No 144
>PHA01630 putative group 1 glycosyl transferase
Probab=76.56 E-value=34 Score=32.17 Aligned_cols=40 Identities=15% Similarity=0.111 Sum_probs=28.6
Q ss_pred eccchhh---hhccCceeEEEe---ccC-chhHHHHHHhCCceeecccc
Q 043290 344 GWVPQVE---ILAHKAIGGFVS---HCG-WNSILESLWYGVPIATWPIY 385 (430)
Q Consensus 344 ~~~pq~~---iL~~~~~~~~it---HgG-~~s~~eal~~GvP~v~~P~~ 385 (430)
.++|+.+ ++..+++ ||. ..| -.++.||+++|+|+|+.-..
T Consensus 196 ~~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~g 242 (331)
T PHA01630 196 TPLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKG 242 (331)
T ss_pred ccCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCC
Confidence 4466655 4778888 552 333 45899999999999997654
No 145
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=75.85 E-value=4.8 Score=40.40 Aligned_cols=72 Identities=7% Similarity=0.102 Sum_probs=45.7
Q ss_pred CceEEEeccch---hhhhccCceeEEEecc---CchhHHHHHHhCCceeecccccccchhHHHHhhhhceeEEeeccccc
Q 043290 338 GRGMICGWVPQ---VEILAHKAIGGFVSHC---GWNSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDLRLDYRV 411 (430)
Q Consensus 338 ~~~~v~~~~pq---~~iL~~~~~~~~itHg---G~~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~~~~~ 411 (430)
.++.+.++... ..++.+..+ +|.=+ |.++.+||++||+|+| .......|... .=|..+.
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d~-~NG~li~----- 473 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEHN-KNGYIID----- 473 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEcC-CCcEEeC-----
Confidence 46777787774 344555555 77655 7889999999999999 21222223332 3344331
Q ss_pred CCcccCHhHHHHHHHHhh
Q 043290 412 GSDLVMACDIESAVRCLM 429 (430)
Q Consensus 412 ~~~~~~~~~l~~ai~~vl 429 (430)
+.++|.+||..+|
T Consensus 474 -----d~~~l~~al~~~L 486 (519)
T TIGR03713 474 -----DISELLKALDYYL 486 (519)
T ss_pred -----CHHHHHHHHHHHH
Confidence 5677777777665
No 146
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=75.82 E-value=29 Score=30.36 Aligned_cols=39 Identities=21% Similarity=0.353 Sum_probs=33.3
Q ss_pred CCCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEec
Q 043290 1 MKKAELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSM 41 (430)
Q Consensus 1 m~~~~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~ 41 (430)
|+- |+|.-.|+.|.-.-...|..+|.++||+..|+++.-
T Consensus 1 MpL--Vvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~d 39 (281)
T KOG3062|consen 1 MPL--VVICGLPCSGKSTRAVELREALKERGTKQSVRIIDD 39 (281)
T ss_pred CCe--EEEeCCCCCCchhHHHHHHHHHHhhcccceEEEech
Confidence 554 889999999999999999999999999866666553
No 147
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=75.46 E-value=19 Score=32.12 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEEecCCC
Q 043290 17 LVSTLEFAKHLTDRDDRISVTLLSMKLA 44 (430)
Q Consensus 17 ~~P~l~La~~L~~rGH~v~Vt~~~~~~~ 44 (430)
..=+..|++.|. .+++ |++++|..+
T Consensus 13 a~Gi~aL~~al~-~~~d--V~VVAP~~~ 37 (252)
T COG0496 13 APGIRALARALR-EGAD--VTVVAPDRE 37 (252)
T ss_pred CHHHHHHHHHHh-hCCC--EEEEccCCC
Confidence 333567888888 8999 999998744
No 148
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=73.83 E-value=14 Score=33.67 Aligned_cols=38 Identities=18% Similarity=0.277 Sum_probs=34.8
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecC
Q 043290 5 ELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMK 42 (430)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (430)
||+++-..+.|++.=+..+.++|+++..+..|++++.+
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~ 38 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPP 38 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEECh
Confidence 48999999999999999999999999877779999986
No 149
>PLN02470 acetolactate synthase
Probab=72.67 E-value=21 Score=36.56 Aligned_cols=92 Identities=14% Similarity=0.124 Sum_probs=50.9
Q ss_pred eecCCccCCH--HHHHHHHHHHHhCCCcEEEEEecCCCCCccccccccCCCCCCChhHHHhhcCceEEE--ec------c
Q 043290 277 CFGSSGSFDV--AQVKEIAIGLERSGYNFLWSLRVSCPKDEASAHRYVTNNGVFPEGFLERIKGRGMIC--GW------V 346 (430)
Q Consensus 277 sfGS~~~~~~--~~~~~~~~al~~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~--~~------~ 346 (430)
+|||....+. ...+.+++.|++.|++.|+-+.+.... .+-+.+.+ ..++.++ .. +
T Consensus 2 ~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~~~~-------------~l~dal~~--~~~i~~i~~rhE~~A~~~ 66 (585)
T PLN02470 2 TFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGGASM-------------EIHQALTR--SNCIRNVLCRHEQGEVFA 66 (585)
T ss_pred CcccCCCCCccccHHHHHHHHHHHcCCCEEEEcCCcccH-------------HHHHHHhc--cCCceEEEeccHHHHHHH
Confidence 4677653322 225668888888888888877655110 01111110 1122222 11 1
Q ss_pred chhhhhccCceeEEEeccCch------hHHHHHHhCCceeecc
Q 043290 347 PQVEILAHKAIGGFVSHCGWN------SILESLWYGVPIATWP 383 (430)
Q Consensus 347 pq~~iL~~~~~~~~itHgG~~------s~~eal~~GvP~v~~P 383 (430)
=...-..+.+++++++|.|-| ++.+|...++|||++.
T Consensus 67 Adgyar~tg~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 67 AEGYAKASGKVGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred HHHHHHHhCCCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 111111223456699999865 8899999999999985
No 150
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=72.26 E-value=61 Score=27.65 Aligned_cols=106 Identities=11% Similarity=-0.015 Sum_probs=60.9
Q ss_pred CCCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCCeE-EEEEecCCCCChhhHHhhhhccCCCCCeEEEeCCCCCCCCCCCC
Q 043290 1 MKKAELIFVPSPGIGHLVSTLEFAKHLTDRDDRIS-VTLLSMKLAVAPWVDAYAKSLTDSQPRICIIDLPPVDPPLPDVL 79 (430)
Q Consensus 1 m~~~~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~-Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 79 (430)
|++..|.+++..+.|-....+.+|.+.+.+|++|. |.|+-.. ... ......++ .++++++.......-..
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~-~~~-GE~~~l~~----l~~v~~~~~g~~~~~~~--- 90 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGA-WST-GERNLLEF----GGGVEFHVMGTGFTWET--- 90 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCC-Ccc-CHHHHHhc----CCCcEEEECCCCCcccC---
Confidence 35568999999999999999999999999998855 3444443 111 11122222 24688887665321111
Q ss_pred CCCHHHHHHHHHHhhhhhHHHHHHHhhccCCCCceEEEEcCCcc
Q 043290 80 KKSPEYFLSLVVESHLPNVKNIVSSRANSGSLQVTGLVLDFFCV 123 (430)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vV~D~~~~ 123 (430)
.+..+. .......+..+.+.+. +..+|+||.|-++.
T Consensus 91 -~~~~e~----~~~~~~~~~~a~~~l~---~~~ydlvVLDEi~~ 126 (191)
T PRK05986 91 -QDRERD----IAAAREGWEEAKRMLA---DESYDLVVLDELTY 126 (191)
T ss_pred -CCcHHH----HHHHHHHHHHHHHHHh---CCCCCEEEEehhhH
Confidence 111111 1222233333333332 25899999997654
No 151
>PLN02846 digalactosyldiacylglycerol synthase
Probab=70.95 E-value=5.6 Score=39.18 Aligned_cols=39 Identities=26% Similarity=0.258 Sum_probs=31.2
Q ss_pred CCcEEEEEcCCCC----CCHHHHHHHHHHHHhCC-CCeEEEEEecC
Q 043290 2 KKAELIFVPSPGI----GHLVSTLEFAKHLTDRD-DRISVTLLSMK 42 (430)
Q Consensus 2 ~~~~i~~~~~p~~----GH~~P~l~La~~L~~rG-H~v~Vt~~~~~ 42 (430)
+|+||++++--.. |=..-.+.++..|+++| |+ |+++.|.
T Consensus 3 ~~mrIaivTdt~lP~vnGva~s~~~~a~~L~~~G~he--V~vvaP~ 46 (462)
T PLN02846 3 KKQHIAIFTTASLPWMTGTAVNPLFRAAYLAKDGDRE--VTLVIPW 46 (462)
T ss_pred CCCEEEEEEcCCCCCCCCeeccHHHHHHHHHhcCCcE--EEEEecC
Confidence 4789999987643 66566777888999999 79 9999875
No 152
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=70.31 E-value=61 Score=27.09 Aligned_cols=20 Identities=30% Similarity=0.308 Sum_probs=17.4
Q ss_pred EEcCCCCCCHHHHHHHHHHH
Q 043290 8 FVPSPGIGHLVSTLEFAKHL 27 (430)
Q Consensus 8 ~~~~p~~GH~~P~l~La~~L 27 (430)
++-.++.||..=|+.|.+.+
T Consensus 2 l~v~gsGGHt~eml~L~~~~ 21 (170)
T PF08660_consen 2 LVVLGSGGHTAEMLRLLKAL 21 (170)
T ss_pred EEEEcCcHHHHHHHHHHHHh
Confidence 34567889999999999999
No 153
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=70.14 E-value=95 Score=29.00 Aligned_cols=38 Identities=13% Similarity=0.287 Sum_probs=33.2
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecC
Q 043290 5 ELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMK 42 (430)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (430)
||+++-..+-|++.=...+.+.|.+.=.+.+|++++.+
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~ 38 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPA 38 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEech
Confidence 58999999999999999999999998445669999975
No 154
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=69.58 E-value=49 Score=29.68 Aligned_cols=22 Identities=14% Similarity=0.218 Sum_probs=16.6
Q ss_pred HHHHHHHHHhCCCCeEEEEEecCCC
Q 043290 20 TLEFAKHLTDRDDRISVTLLSMKLA 44 (430)
Q Consensus 20 ~l~La~~L~~rGH~v~Vt~~~~~~~ 44 (430)
+.+|+++|++ +|+ |++++|...
T Consensus 16 i~aL~~~l~~-~~~--V~VvAP~~~ 37 (253)
T PRK13935 16 IIILAEYLSE-KHE--VFVVAPDKE 37 (253)
T ss_pred HHHHHHHHHh-CCc--EEEEccCCC
Confidence 6678888865 678 889998743
No 155
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=67.94 E-value=54 Score=32.44 Aligned_cols=25 Identities=16% Similarity=0.033 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHhCCCCeEEEEEecCC
Q 043290 17 LVSTLEFAKHLTDRDDRISVTLLSMKL 43 (430)
Q Consensus 17 ~~P~l~La~~L~~rGH~v~Vt~~~~~~ 43 (430)
-.-.-.|+++|+++||+ |+++++..
T Consensus 19 ~~~~~~L~~aL~~~G~~--V~Vi~p~y 43 (476)
T cd03791 19 GDVVGALPKALAKLGHD--VRVIMPKY 43 (476)
T ss_pred HHHHHHHHHHHHHCCCe--EEEEecCC
Confidence 34456799999999999 88998653
No 156
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=67.65 E-value=65 Score=28.78 Aligned_cols=23 Identities=13% Similarity=0.127 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhCCCCeEEEEEecCCC
Q 043290 19 STLEFAKHLTDRDDRISVTLLSMKLA 44 (430)
Q Consensus 19 P~l~La~~L~~rGH~v~Vt~~~~~~~ 44 (430)
=+..|+++|.+.| + |++++|..+
T Consensus 15 Gi~aL~~~l~~~g-~--V~VvAP~~~ 37 (244)
T TIGR00087 15 GIRALYQALKELG-E--VTVVAPARQ 37 (244)
T ss_pred hHHHHHHHHHhCC-C--EEEEeCCCC
Confidence 3567899999888 8 889998743
No 157
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=67.51 E-value=13 Score=33.97 Aligned_cols=78 Identities=15% Similarity=0.224 Sum_probs=58.9
Q ss_pred ccCCHHHHHHHHHHHHhCCCcEEEEEecCCCCCccccccccCCCCCCChhHHHhhcCceEEEeccchhhhhccCceeEEE
Q 043290 282 GSFDVAQVKEIAIGLERSGYNFLWSLRVSCPKDEASAHRYVTNNGVFPEGFLERIKGRGMICGWVPQVEILAHKAIGGFV 361 (430)
Q Consensus 282 ~~~~~~~~~~~~~al~~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~pq~~iL~~~~~~~~i 361 (430)
+..+.+..+++.+++.+...+.||..+++.- ...+.++++.+.+-++|+. ||
T Consensus 44 a~s~~~Ra~dL~~a~~d~~i~aI~~~rGG~g--------------------------a~rlL~~ld~~~~~~~pK~--~i 95 (282)
T cd07025 44 AGTDEERAADLNAAFADPEIKAIWCARGGYG--------------------------ANRLLPYLDYDLIRANPKI--FV 95 (282)
T ss_pred CCCHHHHHHHHHHHhhCCCCCEEEEcCCcCC--------------------------HHHhhhhCCHHHHhhCCeE--EE
Confidence 3556778999999999999999999988721 1245566677777778887 88
Q ss_pred eccCchhHHHHHHh--CCceeecccccc
Q 043290 362 SHCGWNSILESLWY--GVPIATWPIYAE 387 (430)
Q Consensus 362 tHgG~~s~~eal~~--GvP~v~~P~~~D 387 (430)
=..-..+++-+++. |++.+-=|+..+
T Consensus 96 GySDiTaL~~~l~~~~g~~t~hGp~~~~ 123 (282)
T cd07025 96 GYSDITALHLALYAKTGLVTFHGPMLAS 123 (282)
T ss_pred EecHHHHHHHHHHHhcCceEEECccccc
Confidence 88888888888764 777777776544
No 158
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=65.91 E-value=61 Score=29.13 Aligned_cols=38 Identities=18% Similarity=0.213 Sum_probs=24.4
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecCCC
Q 043290 3 KAELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMKLA 44 (430)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~ 44 (430)
|+||++.-==+. |..=+..|+++|.+.| + |++++|...
T Consensus 5 ~M~ILltNDDGi-~a~Gi~aL~~~l~~~g-~--V~VvAP~~~ 42 (257)
T PRK13932 5 KPHILVCNDDGI-EGEGIHVLAASMKKIG-R--VTVVAPAEP 42 (257)
T ss_pred CCEEEEECCCCC-CCHHHHHHHHHHHhCC-C--EEEEcCCCC
Confidence 456665542222 2234678889998887 7 888987743
No 159
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=65.58 E-value=46 Score=31.35 Aligned_cols=106 Identities=12% Similarity=0.173 Sum_probs=63.1
Q ss_pred HHHhhcCC-CCcEEEEeecCCc---cCCHHHHHHHHHHHHhCCCcEEEEEecCCCCCccccccccCCCCCCChhHHHhhc
Q 043290 262 FQWLDDLA-ESSVVFLCFGSSG---SFDVAQVKEIAIGLERSGYNFLWSLRVSCPKDEASAHRYVTNNGVFPEGFLERIK 337 (430)
Q Consensus 262 ~~~l~~~~-~~~vVyvsfGS~~---~~~~~~~~~~~~al~~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (430)
.+++.... .++.|.+.-|+.. ..+.+.+.++++.|.+.+.++++.-+.... +..+-..+.+..+
T Consensus 171 ~~~l~~~~~~~~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~~~~ivl~g~p~~~------------e~~~~~~i~~~~~ 238 (344)
T TIGR02201 171 RALLDEAGVGQNYIVIQPTSRWFFKCWDNDRFSALIDALHARGYEVVLTSGPDKD------------ELAMVNEIAQGCQ 238 (344)
T ss_pred HHHHHhcCCCCCEEEEeCCCCccccCCCHHHHHHHHHHHHhCCCeEEEecCCCHH------------HHHHHHHHHhhCC
Confidence 34444321 3456777777753 567788899998887778887765332200 0000011111111
Q ss_pred -CceE-EEeccc---hhhhhccCceeEEEeccCchhHHHHHHhCCceeec
Q 043290 338 -GRGM-ICGWVP---QVEILAHKAIGGFVSHCGWNSILESLWYGVPIATW 382 (430)
Q Consensus 338 -~~~~-v~~~~p---q~~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~ 382 (430)
.++. +++-.+ -.+++.++++ ||++ -.|-++=|.+.|+|.|++
T Consensus 239 ~~~~~~l~g~~sL~el~ali~~a~l--~Vs~-DSGp~HlAaA~g~p~v~L 285 (344)
T TIGR02201 239 TPRVTSLAGKLTLPQLAALIDHARL--FIGV-DSVPMHMAAALGTPLVAL 285 (344)
T ss_pred CCcccccCCCCCHHHHHHHHHhCCE--EEec-CCHHHHHHHHcCCCEEEE
Confidence 1111 223222 4567888888 9998 788999999999999985
No 160
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=65.01 E-value=53 Score=31.06 Aligned_cols=97 Identities=10% Similarity=0.124 Sum_probs=59.7
Q ss_pred CcEEEEeecCCc---cCCHHHHHHHHHHHHhCCCcEEEEEecCCCCCccccccccCCCCCCChhHHHhh-cCce-EEEec
Q 043290 271 SSVVFLCFGSSG---SFDVAQVKEIAIGLERSGYNFLWSLRVSCPKDEASAHRYVTNNGVFPEGFLERI-KGRG-MICGW 345 (430)
Q Consensus 271 ~~vVyvsfGS~~---~~~~~~~~~~~~al~~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~v~~~ 345 (430)
++.|.+.-|+.. ..+.+.+.++++.|.+.+.++++.-+.+.. + ...-..+.+.. ..++ -+.+.
T Consensus 183 ~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~~~~vvl~ggp~e~-----------e-~~~~~~i~~~~~~~~~~~l~g~ 250 (352)
T PRK10422 183 QNYVVIQPTARQIFKCWDNDKFSAVIDALQARGYEVVLTSGPDKD-----------D-LACVNEIAQGCQTPPVTALAGK 250 (352)
T ss_pred CCeEEEecCCCccccCCCHHHHHHHHHHHHHCCCeEEEEcCCChH-----------H-HHHHHHHHHhcCCCccccccCC
Confidence 467778888753 667888999999998778887776443310 0 00001111111 1111 12232
Q ss_pred c--c-hhhhhccCceeEEEeccCchhHHHHHHhCCceeec
Q 043290 346 V--P-QVEILAHKAIGGFVSHCGWNSILESLWYGVPIATW 382 (430)
Q Consensus 346 ~--p-q~~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~ 382 (430)
. . -.+++.++++ ||++ -.|-++=|.+.|+|.|++
T Consensus 251 ~sL~el~ali~~a~l--~v~n-DSGp~HlAaA~g~P~v~l 287 (352)
T PRK10422 251 TTFPELGALIDHAQL--FIGV-DSAPAHIAAAVNTPLICL 287 (352)
T ss_pred CCHHHHHHHHHhCCE--EEec-CCHHHHHHHHcCCCEEEE
Confidence 2 2 4567888888 8887 567888899999999875
No 161
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=64.19 E-value=15 Score=30.17 Aligned_cols=29 Identities=21% Similarity=0.225 Sum_probs=25.2
Q ss_pred EEEEeecCCccCCHHHHHHHHHHHHhCCC
Q 043290 273 VVFLCFGSSGSFDVAQVKEIAIGLERSGY 301 (430)
Q Consensus 273 vVyvsfGS~~~~~~~~~~~~~~al~~~~~ 301 (430)
.+|+|+||......++++...++|.+.+.
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~ 31 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALAD 31 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCC
Confidence 69999999888777889999999988765
No 162
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=64.14 E-value=1.1e+02 Score=27.57 Aligned_cols=31 Identities=6% Similarity=-0.064 Sum_probs=23.6
Q ss_pred CceEEEEcCCcc------hHHHHHHhcCCceEEEecc
Q 043290 112 QVTGLVLDFFCV------SMVDIAKELSLPSYIFLTS 142 (430)
Q Consensus 112 ~~D~vV~D~~~~------~~~~~A~~lgiP~v~~~~~ 142 (430)
.+|+|++-.... -+..+|+.||+|++.+...
T Consensus 112 ~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 112 GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 699999754333 3578999999998877654
No 163
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=63.25 E-value=92 Score=27.98 Aligned_cols=22 Identities=14% Similarity=0.125 Sum_probs=17.0
Q ss_pred HHHHHHHHHhCCCCeEEEEEecCCC
Q 043290 20 TLEFAKHLTDRDDRISVTLLSMKLA 44 (430)
Q Consensus 20 ~l~La~~L~~rGH~v~Vt~~~~~~~ 44 (430)
+..|+++|.+ +|+ |++++|..+
T Consensus 16 l~aL~~~l~~-~~~--V~VvAP~~~ 37 (253)
T PRK13933 16 INTLAELLSK-YHE--VIIVAPENQ 37 (253)
T ss_pred HHHHHHHHHh-CCc--EEEEccCCC
Confidence 6788888875 678 889997743
No 164
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=62.18 E-value=1.2e+02 Score=27.36 Aligned_cols=77 Identities=22% Similarity=0.244 Sum_probs=46.4
Q ss_pred CceEEEeccc---hhhhhccCceeEEEec---cCchh-HHHHHHhCCceeecccccccchhHHHHhhhhceeEEeecccc
Q 043290 338 GRGMICGWVP---QVEILAHKAIGGFVSH---CGWNS-ILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDLRLDYR 410 (430)
Q Consensus 338 ~~~~v~~~~p---q~~iL~~~~~~~~itH---gG~~s-~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~~~~ 410 (430)
+++.+.+++| ...++..+++ ++.- .|.|. +.||+++|+|+|+.... .....+.+. +.|. +..
T Consensus 257 ~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~~----~~~e~~~~~-~~g~-~~~--- 325 (381)
T COG0438 257 DNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASDVG----GIPEVVEDG-ETGL-LVP--- 325 (381)
T ss_pred CcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECCCC----ChHHHhcCC-CceE-ecC---
Confidence 5677788888 4445666766 5544 35544 59999999999766542 222222221 2355 332
Q ss_pred cCCcccCHhHHHHHHHHhh
Q 043290 411 VGSDLVMACDIESAVRCLM 429 (430)
Q Consensus 411 ~~~~~~~~~~l~~ai~~vl 429 (430)
....+++.+++..++
T Consensus 326 ----~~~~~~~~~~i~~~~ 340 (381)
T COG0438 326 ----PGDVEELADALEQLL 340 (381)
T ss_pred ----CCCHHHHHHHHHHHh
Confidence 125677877777654
No 165
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=61.48 E-value=30 Score=31.85 Aligned_cols=78 Identities=17% Similarity=0.167 Sum_probs=54.1
Q ss_pred CceEEE-eccc---hhhhhccCceeEEEec--cCchhHHHHHHhCCceeecccccccchhHHHHhhhhceeEEeeccccc
Q 043290 338 GRGMIC-GWVP---QVEILAHKAIGGFVSH--CGWNSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDLRLDYRV 411 (430)
Q Consensus 338 ~~~~v~-~~~p---q~~iL~~~~~~~~itH--gG~~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~~~~~ 411 (430)
+++.+. +.+| ...+|++|+++.|+|+ =|.|+++-.++.|||++..- +-+.|.. +.+. |+-+--..+
T Consensus 206 ~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r---~n~fwqd-l~e~-gv~Vlf~~d--- 277 (322)
T PRK02797 206 ENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSR---DNPFWQD-LTEQ-GLPVLFTGD--- 277 (322)
T ss_pred ccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEec---CCchHHH-HHhC-CCeEEecCC---
Confidence 466665 6666 6678999999888886 48999999999999998753 2233332 3343 666543444
Q ss_pred CCcccCHhHHHHHHH
Q 043290 412 GSDLVMACDIESAVR 426 (430)
Q Consensus 412 ~~~~~~~~~l~~ai~ 426 (430)
.++...++++=+
T Consensus 278 ---~L~~~~v~e~~r 289 (322)
T PRK02797 278 ---DLDEDIVREAQR 289 (322)
T ss_pred ---cccHHHHHHHHH
Confidence 677777776633
No 166
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=61.25 E-value=9.3 Score=30.23 Aligned_cols=36 Identities=8% Similarity=0.105 Sum_probs=29.8
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecC
Q 043290 4 AELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMK 42 (430)
Q Consensus 4 ~~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (430)
+||++.-.++.+=+. ...+.++|.++|++ |+++.++
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~--v~vv~S~ 36 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWE--VRVVLSP 36 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSE--EEEEESH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCE--EEEEECC
Confidence 468999999877777 99999999999999 8788876
No 167
>PRK14099 glycogen synthase; Provisional
Probab=61.07 E-value=14 Score=36.82 Aligned_cols=41 Identities=17% Similarity=0.042 Sum_probs=31.9
Q ss_pred CCCcEEEEEcCC------CCCCHHHHHHHHHHHHhCCCCeEEEEEecCC
Q 043290 1 MKKAELIFVPSP------GIGHLVSTLEFAKHLTDRDDRISVTLLSMKL 43 (430)
Q Consensus 1 m~~~~i~~~~~p------~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~ 43 (430)
|+++||++++.= ..|=-...-.|.++|+++||+ |.++.|..
T Consensus 1 ~~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~--v~v~~P~y 47 (485)
T PRK14099 1 MTPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVE--VRTLVPGY 47 (485)
T ss_pred CCCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCc--EEEEeCCC
Confidence 889999998752 334455677888999999999 77888753
No 168
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=60.79 E-value=10 Score=32.40 Aligned_cols=39 Identities=15% Similarity=0.049 Sum_probs=30.7
Q ss_pred CCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecC
Q 043290 2 KKAELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMK 42 (430)
Q Consensus 2 ~~~~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (430)
+.+||++.-.++-|=+.-...|++.|.++||+ |.++.++
T Consensus 4 ~~k~IllgVTGsiaa~k~a~~lir~L~k~G~~--V~vv~T~ 42 (196)
T PRK08305 4 KGKRIGFGLTGSHCTYDEVMPEIEKLVDEGAE--VTPIVSY 42 (196)
T ss_pred CCCEEEEEEcCHHHHHHHHHHHHHHHHhCcCE--EEEEECH
Confidence 45678887777666555579999999999999 7777776
No 169
>PRK12342 hypothetical protein; Provisional
Probab=60.22 E-value=1.2e+02 Score=27.37 Aligned_cols=31 Identities=13% Similarity=-0.022 Sum_probs=23.6
Q ss_pred CceEEEEcCCcc------hHHHHHHhcCCceEEEecc
Q 043290 112 QVTGLVLDFFCV------SMVDIAKELSLPSYIFLTS 142 (430)
Q Consensus 112 ~~D~vV~D~~~~------~~~~~A~~lgiP~v~~~~~ 142 (430)
.+|+|++-.... .+..+|+.||+|++.+...
T Consensus 109 ~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 109 GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 599999765443 2678999999998877643
No 170
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=59.72 E-value=96 Score=25.57 Aligned_cols=102 Identities=13% Similarity=0.045 Sum_probs=55.5
Q ss_pred hcHhHHHHHhhcCCCCcEEEEeecCCccCCHHHHHHHHHHHHhCCCcEEEEEecCCCCCccccccccCCCCCCChhHHHh
Q 043290 256 AQYQKIFQWLDDLAESSVVFLCFGSSGSFDVAQVKEIAIGLERSGYNFLWSLRVSCPKDEASAHRYVTNNGVFPEGFLER 335 (430)
Q Consensus 256 ~~~~~l~~~l~~~~~~~vVyvsfGS~~~~~~~~~~~~~~al~~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (430)
..-.++-+||.+.. ...++ |. ..-....+.++..+.+-+++=.+..... .+..
T Consensus 18 ~~A~~lg~~La~~g---~~lv~-Gg----~~GlM~a~a~ga~~~gg~viGVlp~~l~---------------~~~~---- 70 (159)
T TIGR00725 18 EIAYRLGKELAKKG---HILIN-GG----RTGVMEAVSKGAREAGGLVVGILPDEDF---------------AGNP---- 70 (159)
T ss_pred HHHHHHHHHHHHCC---CEEEc-CC----chhHHHHHHHHHHHCCCeEEEECChhhc---------------cCCC----
Confidence 35567788887743 44555 64 2333444666665556555544432210 0000
Q ss_pred hcCceEEEec-cchhhhhccCceeEEEeccCchhHHH---HHHhCCceeeccc
Q 043290 336 IKGRGMICGW-VPQVEILAHKAIGGFVSHCGWNSILE---SLWYGVPIATWPI 384 (430)
Q Consensus 336 ~~~~~~v~~~-~pq~~iL~~~~~~~~itHgG~~s~~e---al~~GvP~v~~P~ 384 (430)
..+...+.++ .+...++-..+-..++-=||.||..| ++.+++|+++++.
T Consensus 71 ~~~~~i~~~~~~~Rk~~m~~~sda~IvlpGG~GTL~E~~~a~~~~kpv~~l~~ 123 (159)
T TIGR00725 71 YLTIKVKTGMNFARNFILVRSADVVVSVGGGYGTAIEILGAYALGGPVVVLRG 123 (159)
T ss_pred CceEEEECCCcchHHHHHHHHCCEEEEcCCchhHHHHHHHHHHcCCCEEEEEC
Confidence 0011122243 44555655444445666788887655 6889999999875
No 171
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=59.22 E-value=15 Score=30.42 Aligned_cols=27 Identities=22% Similarity=0.329 Sum_probs=21.2
Q ss_pred eeEEEeccCch------hHHHHHHhCCceeecc
Q 043290 357 IGGFVSHCGWN------SILESLWYGVPIATWP 383 (430)
Q Consensus 357 ~~~~itHgG~~------s~~eal~~GvP~v~~P 383 (430)
.+++++|.|-| ++.+|...++|||++.
T Consensus 60 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 92 (162)
T cd07038 60 LGALVTTYGVGELSALNGIAGAYAEHVPVVHIV 92 (162)
T ss_pred CEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEe
Confidence 34477777755 7788999999999985
No 172
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=59.19 E-value=1.1e+02 Score=28.69 Aligned_cols=41 Identities=22% Similarity=0.374 Sum_probs=31.1
Q ss_pred cEEEEEcCC-CCCCHHHHHHHHHHHHhCCCCeEEEEEecCCCCC
Q 043290 4 AELIFVPSP-GIGHLVSTLEFAKHLTDRDDRISVTLLSMKLAVA 46 (430)
Q Consensus 4 ~~i~~~~~p-~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~ 46 (430)
+||+||+-- +-|--.=.-++|-.|++.|.+ |-++++.+.+.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~k--vLlvStDPAhs 43 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKK--VLLVSTDPAHS 43 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCc--EEEEEeCCCCc
Confidence 467777664 568888888899999999987 77787665443
No 173
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=58.83 E-value=47 Score=30.61 Aligned_cols=112 Identities=15% Similarity=0.022 Sum_probs=61.0
Q ss_pred CeEEeCccccCCCCCCCCCChhcHhHHHHHhhcCCCCcEEEEeecCCccCCHHHHHHHHHHHHhCCCcEEEEEecCCCCC
Q 043290 235 PLYTVGPVLHLKSQPNPDLDEAQYQKIFQWLDDLAESSVVFLCFGSSGSFDVAQVKEIAIGLERSGYNFLWSLRVSCPKD 314 (430)
Q Consensus 235 ~~~~VGpl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vVyvsfGS~~~~~~~~~~~~~~al~~~~~~~vw~~~~~~~~~ 314 (430)
+-+++|.....+... ...-.++..+..+..-.++-.-........+...+..+.++++++|+++++-+|......
T Consensus 97 pdrf~~~~~v~p~~~-----~~a~~E~er~v~~~gf~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~~~ 171 (293)
T COG2159 97 PDRFVGFARVDPRDP-----EAAAEELERRVRELGFVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAGPGGA 171 (293)
T ss_pred CcceeeeeeeCCCch-----HHHHHHHHHHHHhcCceEEEecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCCCCCc
Confidence 356666554443321 223456666665533223333233333455666688999999999999999766542110
Q ss_pred ccccccccCCCCCCChhHHHhhcCceEEEeccchhhhhccCceeEEEeccC--chhHHHH
Q 043290 315 EASAHRYVTNNGVFPEGFLERIKGRGMICGWVPQVEILAHKAIGGFVSHCG--WNSILES 372 (430)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~pq~~iL~~~~~~~~itHgG--~~s~~ea 372 (430)
.+.. .....+.=.+-....|+++.++.|+| ..=..|+
T Consensus 172 ------------~~~~---------~~~~p~~~~~va~~fP~l~IVl~H~G~~~p~~~~a 210 (293)
T COG2159 172 ------------GLEK---------GHSDPLYLDDVARKFPELKIVLGHMGEDYPWELEA 210 (293)
T ss_pred ------------cccc---------CCCCchHHHHHHHHCCCCcEEEEecCCCCchhHHH
Confidence 0000 00111112334456789999999999 4444444
No 174
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=58.43 E-value=1.6e+02 Score=27.58 Aligned_cols=38 Identities=18% Similarity=0.328 Sum_probs=35.5
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecC
Q 043290 5 ELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMK 42 (430)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (430)
+|+++-...-|++.=.+.+-+.|.++..++.+++++.+
T Consensus 3 kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~ 40 (334)
T COG0859 3 KILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPK 40 (334)
T ss_pred eEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEecc
Confidence 59999999999999999999999999988889999976
No 175
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=58.33 E-value=42 Score=28.59 Aligned_cols=117 Identities=15% Similarity=0.089 Sum_probs=74.5
Q ss_pred cEEEEeecCCccCCHHHHH-HHHHHHHhCCCcEEEEEecCCCCCccccccccCCCCCCChhHHHhhcCceEEEeccchhh
Q 043290 272 SVVFLCFGSSGSFDVAQVK-EIAIGLERSGYNFLWSLRVSCPKDEASAHRYVTNNGVFPEGFLERIKGRGMICGWVPQVE 350 (430)
Q Consensus 272 ~vVyvsfGS~~~~~~~~~~-~~~~al~~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~pq~~ 350 (430)
+..++.-.. ..+.+.++ ++++.|...+..+|...|.- .-+.+.|+++-++++ .
T Consensus 52 pt~~~~~k~--~~~r~~~d~~l~~~l~~~~~dlvvLAGyM---------------rIL~~~fl~~~~grI--l------- 105 (200)
T COG0299 52 PTVVLDRKE--FPSREAFDRALVEALDEYGPDLVVLAGYM---------------RILGPEFLSRFEGRI--L------- 105 (200)
T ss_pred CEEEecccc--CCCHHHHHHHHHHHHHhcCCCEEEEcchH---------------HHcCHHHHHHhhcce--E-------
Confidence 454444433 44555555 49999999999888877654 125667776665532 1
Q ss_pred hhccCceeEEEeccCchhHHHHHHhCCceeeccccc-c-cchhHHHHhhhhceeEEeecccccCCcccCHhHHHHHHHH
Q 043290 351 ILAHKAIGGFVSHCGWNSILESLWYGVPIATWPIYA-E-QQLNAFRMVKEQGLALDLRLDYRVGSDLVMACDIESAVRC 427 (430)
Q Consensus 351 iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~-D-Q~~~a~rv~~~~G~G~~~~~~~~~~~~~~~~~~l~~ai~~ 427 (430)
==||++ .=.++|..+..+|+.+|+..-++-+++ | .-+-+--|.+. .+.+.. .-|.|+|++-|.+
T Consensus 106 -NIHPSL--LP~f~G~h~~~~A~~aG~k~sG~TVH~V~e~vD~GpII~Q~---~Vpv~~-------~Dt~etl~~RV~~ 171 (200)
T COG0299 106 -NIHPSL--LPAFPGLHAHEQALEAGVKVSGCTVHFVTEGVDTGPIIAQA---AVPVLP-------GDTAETLEARVLE 171 (200)
T ss_pred -ecCccc--ccCCCCchHHHHHHHcCCCccCcEEEEEccCCCCCCeEEEE---eeeecC-------CCCHHHHHHHHHH
Confidence 138888 888999999999999999988887643 3 33333222222 122222 2388888887765
No 176
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=57.96 E-value=80 Score=28.44 Aligned_cols=28 Identities=29% Similarity=0.281 Sum_probs=19.5
Q ss_pred CceEEEEcCCcch-------HHHHHHhcCCceEEEe
Q 043290 112 QVTGLVLDFFCVS-------MVDIAKELSLPSYIFL 140 (430)
Q Consensus 112 ~~D~vV~D~~~~~-------~~~~A~~lgiP~v~~~ 140 (430)
++|+|| |...++ +..+++++|||++.+-
T Consensus 65 ~i~~VI-DAtHPfA~~is~~a~~a~~~~~ipylR~e 99 (256)
T TIGR00715 65 SIDILV-DATHPFAAQITTNATAVCKELGIPYVRFE 99 (256)
T ss_pred CCCEEE-EcCCHHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 788775 444443 3467789999998884
No 177
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=57.29 E-value=17 Score=29.17 Aligned_cols=33 Identities=15% Similarity=0.057 Sum_probs=30.9
Q ss_pred CCCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCC
Q 043290 1 MKKAELIFVPSPGIGHLVSTLEFAKHLTDRDDR 33 (430)
Q Consensus 1 m~~~~i~~~~~p~~GH~~P~l~La~~L~~rGH~ 33 (430)
|+|+||++.+.+..||=.=.--+++.|++.|.+
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~Gfe 42 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFE 42 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCce
Confidence 578999999999999999999999999999966
No 178
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=57.02 E-value=22 Score=32.98 Aligned_cols=77 Identities=8% Similarity=0.057 Sum_probs=58.2
Q ss_pred ccCCHHHHHHHHHHHHhCCCcEEEEEecCCCCCccccccccCCCCCCChhHHHhhcCceEEEeccchhhhhccCceeEEE
Q 043290 282 GSFDVAQVKEIAIGLERSGYNFLWSLRVSCPKDEASAHRYVTNNGVFPEGFLERIKGRGMICGWVPQVEILAHKAIGGFV 361 (430)
Q Consensus 282 ~~~~~~~~~~~~~al~~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~pq~~iL~~~~~~~~i 361 (430)
...+.+..+++.+++.+...+.||..+++. +..++.++++.+.+-.||++ ||
T Consensus 48 ag~~~~Ra~dL~~a~~Dp~i~aI~~~rGG~--------------------------g~~rlL~~lD~~~i~~~PK~--fi 99 (308)
T cd07062 48 SASPEERAEELMAAFADPSIKAIIPTIGGD--------------------------DSNELLPYLDYELIKKNPKI--FI 99 (308)
T ss_pred cCCHHHHHHHHHHHhcCCCCCEEEECCccc--------------------------CHhhhhhhcCHHHHhhCCCE--EE
Confidence 344667899999999999999999998872 12255666777777788887 88
Q ss_pred eccCchhHHHHHH--hCCceeeccccc
Q 043290 362 SHCGWNSILESLW--YGVPIATWPIYA 386 (430)
Q Consensus 362 tHgG~~s~~eal~--~GvP~v~~P~~~ 386 (430)
=..-..+.+-+++ .|.+.+--|+..
T Consensus 100 GySDiTaL~~al~~~~g~~t~hGp~~~ 126 (308)
T cd07062 100 GYSDITALHLAIYKKTGLVTYYGPNLL 126 (308)
T ss_pred eccHHHHHHHHHHHhcCCeEEECcccc
Confidence 8888877888874 377777777654
No 179
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=56.77 E-value=37 Score=29.66 Aligned_cols=36 Identities=25% Similarity=0.472 Sum_probs=29.4
Q ss_pred EEEEEcCC--CCCCHHHHHHHHHHHHhCCCCeEEEEEecC
Q 043290 5 ELIFVPSP--GIGHLVSTLEFAKHLTDRDDRISVTLLSMK 42 (430)
Q Consensus 5 ~i~~~~~p--~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (430)
+|.+++.+ +-|...-.-+|+..|+.+|++ |.++-..
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkK--v~liD~D 40 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKK--VVLIDFD 40 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHcCCe--EEEEecC
Confidence 37777776 668899999999999999999 7777644
No 180
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=56.34 E-value=1.1e+02 Score=26.34 Aligned_cols=39 Identities=13% Similarity=0.007 Sum_probs=34.3
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecCC
Q 043290 3 KAELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMKL 43 (430)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~ 43 (430)
+.+|++.+.++-.|-....-++..|..+|.+ |+++....
T Consensus 84 ~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~--vi~LG~~v 122 (197)
T TIGR02370 84 LGKVVCGVAEGDVHDIGKNIVVTMLRANGFD--VIDLGRDV 122 (197)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCcE--EEECCCCC
Confidence 4689999999999999999999999999976 88777543
No 181
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=56.29 E-value=26 Score=35.42 Aligned_cols=39 Identities=23% Similarity=0.248 Sum_probs=28.6
Q ss_pred chhhhhccCceeEEEe-ccCch-hHHHHHHhCCceeecccc
Q 043290 347 PQVEILAHKAIGGFVS-HCGWN-SILESLWYGVPIATWPIY 385 (430)
Q Consensus 347 pq~~iL~~~~~~~~it-HgG~~-s~~eal~~GvP~v~~P~~ 385 (430)
+..+++.-+++.+|=+ +=|+| +++||+++|+|+|+....
T Consensus 467 ~y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~ 507 (590)
T cd03793 467 DYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLS 507 (590)
T ss_pred chHHHhhhceEEEeccccCCCCcHHHHHHHcCCCEEEccCc
Confidence 4677777788833322 45655 899999999999997763
No 182
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=56.28 E-value=1.3e+02 Score=26.88 Aligned_cols=22 Identities=18% Similarity=0.193 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhCCCCeEEEEEecCC
Q 043290 19 STLEFAKHLTDRDDRISVTLLSMKL 43 (430)
Q Consensus 19 P~l~La~~L~~rGH~v~Vt~~~~~~ 43 (430)
=+..|+++|.+. |+ |++++|..
T Consensus 15 Gi~aL~~~l~~~-~~--V~VvAP~~ 36 (250)
T PRK00346 15 GIRALAEALREL-AD--VTVVAPDR 36 (250)
T ss_pred hHHHHHHHHHhC-CC--EEEEeCCC
Confidence 367889999988 68 88999874
No 183
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=56.22 E-value=31 Score=24.96 Aligned_cols=53 Identities=11% Similarity=0.122 Sum_probs=32.2
Q ss_pred ccCchhHHHHHHhCCceeecccccccchhHHHHhhhhceeEEeecccccCCcccCHhHHHHHHHHhhC
Q 043290 363 HCGWNSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDLRLDYRVGSDLVMACDIESAVRCLMD 430 (430)
Q Consensus 363 HgG~~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~~~~~~~~~~~~~~l~~ai~~vl~ 430 (430)
+|-..-+.|++++|+|+|+-.. ......+ .. |... +-. . +.+++.++|+.+++
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~-~~-~~~~-~~~-------~-~~~el~~~i~~ll~ 61 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIF-ED-GEHI-ITY-------N-DPEELAEKIEYLLE 61 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHc-CC-CCeE-EEE-------C-CHHHHHHHHHHHHC
Confidence 4445689999999999998765 2222211 11 3111 111 2 78888888887753
No 184
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=55.79 E-value=25 Score=31.20 Aligned_cols=98 Identities=9% Similarity=0.123 Sum_probs=51.9
Q ss_pred CCcEEEEeecCCc---cCCHHHHHHHHHHHHhCCCcEEEEEecCCCCCccccccccCCCCCCChhHHHhhcC-ceEEEec
Q 043290 270 ESSVVFLCFGSSG---SFDVAQVKEIAIGLERSGYNFLWSLRVSCPKDEASAHRYVTNNGVFPEGFLERIKG-RGMICGW 345 (430)
Q Consensus 270 ~~~vVyvsfGS~~---~~~~~~~~~~~~al~~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~ 345 (430)
+++.|.+..|+.. ..+.+.+.++++.|.+.+++++...+.... . ...-..+.+..++ .+.+.+-
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~-----------~-~~~~~~~~~~~~~~~~~~~~~ 171 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQ-----------E-KEIADQIAAGLQNPVINLAGK 171 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHH-----------H-HHHHHHHHTTHTTTTEEETTT
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHH-----------H-HHHHHHHHHhcccceEeecCC
Confidence 4567777777754 667888999999998888676554333200 0 0000011111111 2223222
Q ss_pred cc---hhhhhccCceeEEEeccCchhHHHHHHhCCceeec
Q 043290 346 VP---QVEILAHKAIGGFVSHCGWNSILESLWYGVPIATW 382 (430)
Q Consensus 346 ~p---q~~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~ 382 (430)
.+ ...++.++++ +|+. -.|.++=|.+.|+|+|++
T Consensus 172 ~~l~e~~ali~~a~~--~I~~-Dtg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 172 TSLRELAALISRADL--VIGN-DTGPMHLAAALGTPTVAL 208 (247)
T ss_dssp S-HHHHHHHHHTSSE--EEEE-SSHHHHHHHHTT--EEEE
T ss_pred CCHHHHHHHHhcCCE--EEec-CChHHHHHHHHhCCEEEE
Confidence 22 3577888887 8876 567889999999999987
No 185
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=55.74 E-value=41 Score=28.60 Aligned_cols=35 Identities=26% Similarity=0.433 Sum_probs=22.2
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhC--CCCeEEEEEe
Q 043290 6 LIFVPSPGIGHLVSTLEFAKHLTDR--DDRISVTLLS 40 (430)
Q Consensus 6 i~~~~~p~~GH~~P~l~La~~L~~r--GH~v~Vt~~~ 40 (430)
++.+=..+-|-++-...|+++|.++ |+.+-||..|
T Consensus 23 ~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T 59 (186)
T PF04413_consen 23 LIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTT 59 (186)
T ss_dssp -EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-
T ss_pred cEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 3444456789999999999999998 6664444433
No 186
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=55.30 E-value=96 Score=30.43 Aligned_cols=26 Identities=23% Similarity=0.130 Sum_probs=21.2
Q ss_pred CceEEEEcCCcchHHHHHHhcCCceEEEe
Q 043290 112 QVTGLVLDFFCVSMVDIAKELSLPSYIFL 140 (430)
Q Consensus 112 ~~D~vV~D~~~~~~~~~A~~lgiP~v~~~ 140 (430)
+||++|... ....+|+++|||++.+.
T Consensus 377 ~pDliiG~s---~~~~~a~~~gip~v~~~ 402 (435)
T cd01974 377 PVDLLIGNT---YGKYIARDTDIPLVRFG 402 (435)
T ss_pred CCCEEEECc---cHHHHHHHhCCCEEEee
Confidence 799999876 45788999999987554
No 187
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=55.07 E-value=1.4e+02 Score=25.91 Aligned_cols=48 Identities=19% Similarity=0.156 Sum_probs=37.1
Q ss_pred cHhHHHHHhhcCCCCcEEEEeecCCccCCHHHHHHHHHHHHhCCCcEEE
Q 043290 257 QYQKIFQWLDDLAESSVVFLCFGSSGSFDVAQVKEIAIGLERSGYNFLW 305 (430)
Q Consensus 257 ~~~~l~~~l~~~~~~~vVyvsfGS~~~~~~~~~~~~~~al~~~~~~~vw 305 (430)
..+.+.+|+... .+++.||=+-|.......-.++..++|+++|+.+.=
T Consensus 20 ~~~~i~n~l~g~-~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~ 67 (224)
T COG3340 20 FLPFIANFLQGK-RKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSE 67 (224)
T ss_pred hhHHHHHHhcCC-CceEEEEecCccccchHHHHHHHHHHHHHcCCeeee
Confidence 345566666654 458999999998877777888899999999987643
No 188
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=55.03 E-value=29 Score=25.63 Aligned_cols=19 Identities=16% Similarity=0.256 Sum_probs=15.3
Q ss_pred HHHHHHHHHhCCCCeEEEEEecC
Q 043290 20 TLEFAKHLTDRDDRISVTLLSMK 42 (430)
Q Consensus 20 ~l~La~~L~~rGH~v~Vt~~~~~ 42 (430)
++.+|+.|.+.|++ +++|+
T Consensus 2 ~~~~a~~l~~lG~~----i~AT~ 20 (95)
T PF02142_consen 2 IVPLAKRLAELGFE----IYATE 20 (95)
T ss_dssp HHHHHHHHHHTTSE----EEEEH
T ss_pred HHHHHHHHHHCCCE----EEECh
Confidence 57899999999966 56665
No 189
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=53.99 E-value=18 Score=28.22 Aligned_cols=36 Identities=17% Similarity=0.121 Sum_probs=24.1
Q ss_pred EEEEEcCCCCC---CHHHHHHHHHHHHhCCCCeEEEEEecC
Q 043290 5 ELIFVPSPGIG---HLVSTLEFAKHLTDRDDRISVTLLSMK 42 (430)
Q Consensus 5 ~i~~~~~p~~G---H~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (430)
||+|+--|-.+ .-.-.++|+.+..+|||+ |.++.+.
T Consensus 2 ki~fvmDpi~~i~~~kDTT~alm~eAq~RGhe--v~~~~~~ 40 (119)
T PF02951_consen 2 KIAFVMDPIESIKPYKDTTFALMLEAQRRGHE--VFYYEPG 40 (119)
T ss_dssp EEEEEES-GGG--TTT-HHHHHHHHHHHTT-E--EEEE-GG
T ss_pred eEEEEeCCHHHCCCCCChHHHHHHHHHHCCCE--EEEEEcC
Confidence 47777766554 335678899999999999 7777755
No 190
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=53.94 E-value=72 Score=29.67 Aligned_cols=38 Identities=13% Similarity=0.214 Sum_probs=33.1
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecC
Q 043290 5 ELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMK 42 (430)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (430)
||+++-....|++.=...+.+.|.++=.+.+||+++.+
T Consensus 2 ~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~ 39 (322)
T PRK10964 2 RVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEE 39 (322)
T ss_pred eEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECH
Confidence 69999999999999999999999987344559999976
No 191
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=53.33 E-value=45 Score=27.60 Aligned_cols=27 Identities=11% Similarity=0.219 Sum_probs=22.3
Q ss_pred eeEEEeccCch------hHHHHHHhCCceeecc
Q 043290 357 IGGFVSHCGWN------SILESLWYGVPIATWP 383 (430)
Q Consensus 357 ~~~~itHgG~~------s~~eal~~GvP~v~~P 383 (430)
.+++++|+|-| ++.+|...++|||++.
T Consensus 64 ~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 64 LGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIA 96 (164)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 34488888855 7889999999999985
No 192
>PRK14099 glycogen synthase; Provisional
Probab=53.29 E-value=93 Score=31.06 Aligned_cols=64 Identities=16% Similarity=0.119 Sum_probs=36.2
Q ss_pred cCceeEEEe---ccCch-hHHHHHHhCCceeeccccc--ccchhHHHH---hhhhceeEEeecccccCCcccCHhHHHHH
Q 043290 354 HKAIGGFVS---HCGWN-SILESLWYGVPIATWPIYA--EQQLNAFRM---VKEQGLALDLRLDYRVGSDLVMACDIESA 424 (430)
Q Consensus 354 ~~~~~~~it---HgG~~-s~~eal~~GvP~v~~P~~~--DQ~~~a~rv---~~~~G~G~~~~~~~~~~~~~~~~~~l~~a 424 (430)
.+++ |+. +=|.| +.+||+++|+|.|+.-..+ |--...... +.. +.|..++ .-++++++++
T Consensus 369 ~aDi--fv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~-~~G~l~~--------~~d~~~La~a 437 (485)
T PRK14099 369 GADA--LLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGV-ATGVQFS--------PVTADALAAA 437 (485)
T ss_pred cCCE--EEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCC-CceEEeC--------CCCHHHHHHH
Confidence 4566 664 33433 7789999998777765422 221111000 011 3566655 3478888888
Q ss_pred HHHh
Q 043290 425 VRCL 428 (430)
Q Consensus 425 i~~v 428 (430)
|.++
T Consensus 438 i~~a 441 (485)
T PRK14099 438 LRKT 441 (485)
T ss_pred HHHH
Confidence 8763
No 193
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=53.23 E-value=1.6e+02 Score=26.52 Aligned_cols=30 Identities=10% Similarity=-0.052 Sum_probs=21.5
Q ss_pred CceEEEEcC-----Ccc-hHHHHHHhcCCceEEEec
Q 043290 112 QVTGLVLDF-----FCV-SMVDIAKELSLPSYIFLT 141 (430)
Q Consensus 112 ~~D~vV~D~-----~~~-~~~~~A~~lgiP~v~~~~ 141 (430)
++|+|++-- -+. -+..+|+.||+|++.+..
T Consensus 111 ~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~ 146 (260)
T COG2086 111 GPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVS 146 (260)
T ss_pred CCCEEEEecccccCCccchHHHHHHHhCCceeeeEE
Confidence 788888532 222 367899999999876653
No 194
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=53.23 E-value=24 Score=34.63 Aligned_cols=77 Identities=12% Similarity=0.025 Sum_probs=50.8
Q ss_pred CceEEE-eccc--hhhhhccCceeEEEeccC--chhHHHHHHhCCceeecccccccchhHHHHhhhhceeEEeecccccC
Q 043290 338 GRGMIC-GWVP--QVEILAHKAIGGFVSHCG--WNSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDLRLDYRVG 412 (430)
Q Consensus 338 ~~~~v~-~~~p--q~~iL~~~~~~~~itHgG--~~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~~~~~~ 412 (430)
+|+.+- ++.+ -.+++..|.+-+-|.||. ..++.||+.+|+|+++.=...-.. ..+.. |-.+..
T Consensus 328 ~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~~---~~i~~----g~l~~~----- 395 (438)
T TIGR02919 328 DNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHNR---DFIAS----ENIFEH----- 395 (438)
T ss_pred CCcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccCCc---ccccC----CceecC-----
Confidence 465554 6666 568999999988888876 669999999999999865432211 11111 333332
Q ss_pred CcccCHhHHHHHHHHhh
Q 043290 413 SDLVMACDIESAVRCLM 429 (430)
Q Consensus 413 ~~~~~~~~l~~ai~~vl 429 (430)
-+.+++.++|.++|
T Consensus 396 ---~~~~~m~~~i~~lL 409 (438)
T TIGR02919 396 ---NEVDQLISKLKDLL 409 (438)
T ss_pred ---CCHHHHHHHHHHHh
Confidence 25677777777665
No 195
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=52.47 E-value=29 Score=29.13 Aligned_cols=67 Identities=15% Similarity=0.195 Sum_probs=39.1
Q ss_pred cCceeEEEeccCchhHHHHHHhCCceeeccccc-c----------------------cchhHHHHhhhhceeEEeecccc
Q 043290 354 HKAIGGFVSHCGWNSILESLWYGVPIATWPIYA-E----------------------QQLNAFRMVKEQGLALDLRLDYR 410 (430)
Q Consensus 354 ~~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~-D----------------------Q~~~a~rv~~~~G~G~~~~~~~~ 410 (430)
+..+..+|+.||......... ++|+|-+++.+ | .......+.+.+|+-+....
T Consensus 32 ~~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~~i~~~~--- 107 (176)
T PF06506_consen 32 SEGADVIISRGGTAELLRKHV-SIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLGVDIKIYP--- 107 (176)
T ss_dssp TTT-SEEEEEHHHHHHHHCC--SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT-EEEEEE---
T ss_pred hcCCeEEEECCHHHHHHHHhC-CCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhCCceEEEE---
Confidence 344445999999999998887 99999998744 2 33335555565555544332
Q ss_pred cCCcccCHhHHHHHHHHh
Q 043290 411 VGSDLVMACDIESAVRCL 428 (430)
Q Consensus 411 ~~~~~~~~~~l~~ai~~v 428 (430)
.-+.+++..+|.++
T Consensus 108 ----~~~~~e~~~~i~~~ 121 (176)
T PF06506_consen 108 ----YDSEEEIEAAIKQA 121 (176)
T ss_dssp ----ESSHHHHHHHHHHH
T ss_pred ----ECCHHHHHHHHHHH
Confidence 34567777777664
No 196
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=52.43 E-value=58 Score=26.30 Aligned_cols=38 Identities=18% Similarity=0.251 Sum_probs=30.5
Q ss_pred CCcEEEEeecCCccCCHHHHHHHHHHHHhCCCcEEEEEe
Q 043290 270 ESSVVFLCFGSSGSFDVAQVKEIAIGLERSGYNFLWSLR 308 (430)
Q Consensus 270 ~~~vVyvsfGS~~~~~~~~~~~~~~al~~~~~~~vw~~~ 308 (430)
...+|++++||.-....+.++++++.+. .+.++++...
T Consensus 50 ~~d~vvi~lGtNd~~~~~nl~~ii~~~~-~~~~ivlv~~ 87 (150)
T cd01840 50 LRKTVVIGLGTNGPFTKDQLDELLDALG-PDRQVYLVNP 87 (150)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHcC-CCCEEEEEEC
Confidence 3469999999988778889999999885 4678887654
No 197
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=52.15 E-value=2.1e+02 Score=26.93 Aligned_cols=38 Identities=8% Similarity=0.269 Sum_probs=34.1
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecC
Q 043290 5 ELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMK 42 (430)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (430)
||+++-..+.|++.=.+.+.+.|+++-.+.+|++++.+
T Consensus 2 rILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~ 39 (348)
T PRK10916 2 KILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPA 39 (348)
T ss_pred cEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEech
Confidence 59999999999999999999999998555669999976
No 198
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=52.08 E-value=1.5e+02 Score=26.81 Aligned_cols=24 Identities=4% Similarity=0.002 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhCCCCeEEEEEecCCC
Q 043290 18 VSTLEFAKHLTDRDDRISVTLLSMKLA 44 (430)
Q Consensus 18 ~P~l~La~~L~~rGH~v~Vt~~~~~~~ 44 (430)
.=+..|++.|.+.| + |++++|..+
T Consensus 14 pGi~aL~~al~~~g-~--V~VvAP~~e 37 (266)
T PRK13934 14 PGLRLLYEFVSPLG-E--VDVVAPETP 37 (266)
T ss_pred HHHHHHHHHHHhCC-c--EEEEccCCC
Confidence 44678999998887 7 888887743
No 199
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=51.97 E-value=83 Score=28.75 Aligned_cols=94 Identities=18% Similarity=0.206 Sum_probs=63.1
Q ss_pred HhHHHHHhhcCCCCcEEEEeecCCccCCHHHHHHHHHHHHhCCCcEEEEEecCCCCCccccccccCCCCCCChhHHHhhc
Q 043290 258 YQKIFQWLDDLAESSVVFLCFGSSGSFDVAQVKEIAIGLERSGYNFLWSLRVSCPKDEASAHRYVTNNGVFPEGFLERIK 337 (430)
Q Consensus 258 ~~~l~~~l~~~~~~~vVyvsfGS~~~~~~~~~~~~~~al~~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (430)
-+...++|.. .+.++++++|+ +-.....+...|.+.|.+++...+.. .
T Consensus 120 l~~av~~L~~--A~rI~~~G~g~----S~~vA~~~~~~l~~ig~~~~~~~d~~--------------------~------ 167 (281)
T COG1737 120 LERAVELLAK--ARRIYFFGLGS----SGLVASDLAYKLMRIGLNVVALSDTH--------------------G------ 167 (281)
T ss_pred HHHHHHHHHc--CCeEEEEEech----hHHHHHHHHHHHHHcCCceeEecchH--------------------H------
Confidence 4455667776 45688888877 44455667788888888876653222 0
Q ss_pred CceEEEeccchhhhhccCceeEEEeccCch-----hHHHHHHhCCceeecccccccch
Q 043290 338 GRGMICGWVPQVEILAHKAIGGFVSHCGWN-----SILESLWYGVPIATWPIYAEQQL 390 (430)
Q Consensus 338 ~~~~v~~~~pq~~iL~~~~~~~~itHgG~~-----s~~eal~~GvP~v~~P~~~DQ~~ 390 (430)
.+ -+...+...++-.+|+|.|.. .+..|-..|+|+|++--..+-+.
T Consensus 168 ------~~-~~~~~~~~~Dv~i~iS~sG~t~e~i~~a~~ak~~ga~vIaiT~~~~spl 218 (281)
T COG1737 168 ------QL-MQLALLTPGDVVIAISFSGYTREIVEAAELAKERGAKVIAITDSADSPL 218 (281)
T ss_pred ------HH-HHHHhCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEcCCCCCch
Confidence 11 255666677787899999976 45566788999999876655443
No 200
>PHA02542 41 41 helicase; Provisional
Probab=51.80 E-value=1.6e+02 Score=29.21 Aligned_cols=36 Identities=14% Similarity=0.275 Sum_probs=31.4
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecCC
Q 043290 6 LIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMKL 43 (430)
Q Consensus 6 i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~ 43 (430)
+++..-|+.|--.-.+.+|...+..|+. |-+++-+-
T Consensus 193 iiIaarPgmGKTtfalniA~~~a~~g~~--Vl~fSLEM 228 (473)
T PHA02542 193 NVLLAGVNVGKSLGLCSLAADYLQQGYN--VLYISMEM 228 (473)
T ss_pred EEEEcCCCccHHHHHHHHHHHHHhcCCc--EEEEeccC
Confidence 5677888999999999999999999988 88888764
No 201
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=51.58 E-value=25 Score=27.04 Aligned_cols=36 Identities=22% Similarity=0.307 Sum_probs=31.7
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEec
Q 043290 4 AELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSM 41 (430)
Q Consensus 4 ~~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~ 41 (430)
.|+++.+.+..-|-.-...++..|.++||+ |.++-.
T Consensus 1 ~~v~~~~~~~~~~~lGl~~la~~l~~~G~~--v~~~d~ 36 (121)
T PF02310_consen 1 IRVVLACVPGEVHPLGLLYLAAYLRKAGHE--VDILDA 36 (121)
T ss_dssp -EEEEEEBTTSSTSHHHHHHHHHHHHTTBE--EEEEES
T ss_pred CEEEEEeeCCcchhHHHHHHHHHHHHCCCe--EEEECC
Confidence 378999999999999999999999999998 777753
No 202
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=50.21 E-value=1e+02 Score=25.60 Aligned_cols=56 Identities=18% Similarity=0.364 Sum_probs=40.3
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEE-EEecCCCCChhhHHhhhhccCCCCCeEEEeCCCCC
Q 043290 4 AELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVT-LLSMKLAVAPWVDAYAKSLTDSQPRICIIDLPPVD 72 (430)
Q Consensus 4 ~~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 72 (430)
++|.+.-.|+-|-..-.+.++..|.++|.+ |- |+|++- +.. ...-+++.+++..+.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~k--vgGf~t~EV------R~g-----GkR~GF~Ivdl~tg~ 62 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYK--VGGFITPEV------REG-----GKRIGFKIVDLATGE 62 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCce--eeeEEeeee------ecC-----CeEeeeEEEEccCCc
Confidence 579999999999999999999999999966 54 555441 111 112357777777553
No 203
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=50.07 E-value=45 Score=31.13 Aligned_cols=32 Identities=22% Similarity=0.297 Sum_probs=27.6
Q ss_pred EcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecC
Q 043290 9 VPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMK 42 (430)
Q Consensus 9 ~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (430)
++.++.|-.--.+.||++|.+|| +++-+++-.
T Consensus 55 ltvGGtGKTP~vi~la~~l~~rG--~~~gvvSRG 86 (336)
T COG1663 55 LTVGGTGKTPVVIWLAEALQARG--VRVGVVSRG 86 (336)
T ss_pred EEECCCCcCHHHHHHHHHHHhcC--CeeEEEecC
Confidence 57889999999999999999999 448888843
No 204
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=49.61 E-value=1.3e+02 Score=27.18 Aligned_cols=31 Identities=10% Similarity=-0.029 Sum_probs=20.4
Q ss_pred CCceEEEE----------cCCcch---HHHHHHhcCCceEEEec
Q 043290 111 LQVTGLVL----------DFFCVS---MVDIAKELSLPSYIFLT 141 (430)
Q Consensus 111 ~~~D~vV~----------D~~~~~---~~~~A~~lgiP~v~~~~ 141 (430)
.+||+||+ |.++++ ++.-|..+|||.+.++.
T Consensus 86 ~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 86 APPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred CCCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 37899986 333333 23445568999998874
No 205
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.49 E-value=43 Score=27.37 Aligned_cols=48 Identities=15% Similarity=0.046 Sum_probs=32.5
Q ss_pred hHHHHHHHhhcc-CCCCceEEEEcCCcc----------hHHHHHHhcCCceEEEecchh
Q 043290 97 NVKNIVSSRANS-GSLQVTGLVLDFFCV----------SMVDIAKELSLPSYIFLTSNL 144 (430)
Q Consensus 97 ~~~~~l~~~~~~-~~~~~D~vV~D~~~~----------~~~~~A~~lgiP~v~~~~~~~ 144 (430)
.++.++.++..+ -.+.||+|++..-+- -+..+|+++|+|++-.+....
T Consensus 108 nvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg 166 (219)
T KOG0081|consen 108 NVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTG 166 (219)
T ss_pred HHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccC
Confidence 445667776543 357999999765432 156789999999887665443
No 206
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=49.18 E-value=52 Score=32.51 Aligned_cols=69 Identities=13% Similarity=-0.010 Sum_probs=45.6
Q ss_pred eccchhhh---hccCceeEEEe---ccCch-hHHHHHHhCCc----eeecccccccchhHHHHhhhhceeEEeecccccC
Q 043290 344 GWVPQVEI---LAHKAIGGFVS---HCGWN-SILESLWYGVP----IATWPIYAEQQLNAFRMVKEQGLALDLRLDYRVG 412 (430)
Q Consensus 344 ~~~pq~~i---L~~~~~~~~it---HgG~~-s~~eal~~GvP----~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~~~~~~ 412 (430)
+.+|+.++ +..+++ |+. +=|+| ++.||+++|+| +|+--+.+- +..+ +-|+.++
T Consensus 342 ~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~----~~~l----~~gllVn------ 405 (456)
T TIGR02400 342 RSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGA----AQEL----NGALLVN------ 405 (456)
T ss_pred CCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCCC----hHHh----CCcEEEC------
Confidence 55667665 566776 664 44655 77899999999 666554432 1111 3356555
Q ss_pred CcccCHhHHHHHHHHhhC
Q 043290 413 SDLVMACDIESAVRCLMD 430 (430)
Q Consensus 413 ~~~~~~~~l~~ai~~vl~ 430 (430)
..+.+++++||.++|+
T Consensus 406 --P~d~~~lA~aI~~aL~ 421 (456)
T TIGR02400 406 --PYDIDGMADAIARALT 421 (456)
T ss_pred --CCCHHHHHHHHHHHHc
Confidence 4588999999988763
No 207
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=49.01 E-value=33 Score=27.03 Aligned_cols=38 Identities=16% Similarity=0.407 Sum_probs=28.4
Q ss_pred cEEEEeecCCccCCHHHHHHHHHHHHh--CCCcEEEEEec
Q 043290 272 SVVFLCFGSSGSFDVAQVKEIAIGLER--SGYNFLWSLRV 309 (430)
Q Consensus 272 ~vVyvsfGS~~~~~~~~~~~~~~al~~--~~~~~vw~~~~ 309 (430)
.+++++|||......+.+..+.+.+++ .+..+-|.+-+
T Consensus 2 aillv~fGS~~~~~~~~~~~i~~~l~~~~p~~~V~~afts 41 (127)
T cd03412 2 AILLVSFGTSYPTAEKTIDAIEDKVRAAFPDYEVRWAFTS 41 (127)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHHHCCCCeEEEEecH
Confidence 589999999766455667788888864 56688888754
No 208
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=48.80 E-value=22 Score=35.25 Aligned_cols=70 Identities=13% Similarity=0.036 Sum_probs=44.0
Q ss_pred Eeccchhhh---hccCceeEEEe---ccCch-hHHHHHHhCCc----eeecccccccchhHHHHhhhhceeEEeeccccc
Q 043290 343 CGWVPQVEI---LAHKAIGGFVS---HCGWN-SILESLWYGVP----IATWPIYAEQQLNAFRMVKEQGLALDLRLDYRV 411 (430)
Q Consensus 343 ~~~~pq~~i---L~~~~~~~~it---HgG~~-s~~eal~~GvP----~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~~~~~ 411 (430)
.+++++.++ +..+++ ||. .-|+| ++.||+++|+| +|+.-+.+- + . .. .-|..++
T Consensus 346 ~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~----~-~--~~-~~g~lv~----- 410 (460)
T cd03788 346 YRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGA----A-E--EL-SGALLVN----- 410 (460)
T ss_pred eCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEeccccc----h-h--hc-CCCEEEC-----
Confidence 367787665 667777 663 44655 67899999999 554432221 1 1 01 2255555
Q ss_pred CCcccCHhHHHHHHHHhhC
Q 043290 412 GSDLVMACDIESAVRCLMD 430 (430)
Q Consensus 412 ~~~~~~~~~l~~ai~~vl~ 430 (430)
..+.++++++|.++|+
T Consensus 411 ---p~d~~~la~ai~~~l~ 426 (460)
T cd03788 411 ---PYDIDEVADAIHRALT 426 (460)
T ss_pred ---CCCHHHHHHHHHHHHc
Confidence 3478899999988763
No 209
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=47.61 E-value=1.7e+02 Score=28.51 Aligned_cols=27 Identities=19% Similarity=0.242 Sum_probs=21.6
Q ss_pred CCceEEEEcCCcchHHHHHHhcCCceEEEe
Q 043290 111 LQVTGLVLDFFCVSMVDIAKELSLPSYIFL 140 (430)
Q Consensus 111 ~~~D~vV~D~~~~~~~~~A~~lgiP~v~~~ 140 (430)
.+||++|... .+..+|+++|||.+.+.
T Consensus 349 ~~pDl~Ig~s---~~~~~a~~~giP~~r~~ 375 (416)
T cd01980 349 YRPDLAIGTT---PLVQYAKEKGIPALYYT 375 (416)
T ss_pred cCCCEEEeCC---hhhHHHHHhCCCEEEec
Confidence 3899999773 46678999999987654
No 210
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=47.56 E-value=70 Score=24.91 Aligned_cols=21 Identities=19% Similarity=0.170 Sum_probs=12.8
Q ss_pred HHHHHHHHhCCCCeEEEEEec
Q 043290 21 LEFAKHLTDRDDRISVTLLSM 41 (430)
Q Consensus 21 l~La~~L~~rGH~v~Vt~~~~ 41 (430)
-.+...+.++|+++.|.++|.
T Consensus 15 gg~i~~~~~~g~~v~vv~~t~ 35 (128)
T PF02585_consen 15 GGTIAKLAEAGHRVVVVTLTD 35 (128)
T ss_dssp HHHHHHHHHTT-EEEEEECE-
T ss_pred HHHHHHHHhcCCeEEEEEecc
Confidence 345567888999966555554
No 211
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=47.38 E-value=28 Score=31.45 Aligned_cols=37 Identities=14% Similarity=0.304 Sum_probs=18.3
Q ss_pred EEEEeecCCccCCHH-HHHHHHHHHHh--CCCcEEEEEec
Q 043290 273 VVFLCFGSSGSFDVA-QVKEIAIGLER--SGYNFLWSLRV 309 (430)
Q Consensus 273 vVyvsfGS~~~~~~~-~~~~~~~al~~--~~~~~vw~~~~ 309 (430)
++.|||||......+ -+..+.+.+++ .++.+.|++.+
T Consensus 3 IllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS 42 (262)
T PF06180_consen 3 ILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTS 42 (262)
T ss_dssp EEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchH
Confidence 667777776543333 45555555554 46666666554
No 212
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=46.07 E-value=2.1e+02 Score=27.98 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=21.5
Q ss_pred CCceEEEEcCCcchHHHHHHhcCCceEEEe
Q 043290 111 LQVTGLVLDFFCVSMVDIAKELSLPSYIFL 140 (430)
Q Consensus 111 ~~~D~vV~D~~~~~~~~~A~~lgiP~v~~~ 140 (430)
.+||++|... -+..+|+++|||.+.+.
T Consensus 354 ~~pDllig~s---~~~~~A~k~gIP~vr~g 380 (422)
T TIGR02015 354 FEPDLAIGTT---PLVQFAKEHGIPALYFT 380 (422)
T ss_pred CCCCEEEcCC---cchHHHHHcCCCEEEec
Confidence 3899999873 45668999999987654
No 213
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=45.43 E-value=1.4e+02 Score=23.10 Aligned_cols=36 Identities=17% Similarity=0.154 Sum_probs=32.0
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecC
Q 043290 5 ELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMK 42 (430)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (430)
||++.+.++-.|-.-..-++.-|...|.+ |....+.
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~--vi~lG~~ 36 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFE--VIYTGLR 36 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCE--EEECCCC
Confidence 58999999999999999999999999977 7777754
No 214
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=45.03 E-value=99 Score=29.10 Aligned_cols=81 Identities=17% Similarity=0.175 Sum_probs=57.0
Q ss_pred CceEEE-eccc---hhhhhccCceeEEEec--cCchhHHHHHHhCCceeecccccccchhHHHHhhhhceeEEeeccccc
Q 043290 338 GRGMIC-GWVP---QVEILAHKAIGGFVSH--CGWNSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLALDLRLDYRV 411 (430)
Q Consensus 338 ~~~~v~-~~~p---q~~iL~~~~~~~~itH--gG~~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~~~~~ 411 (430)
+++.+. +++| ...+|..|+++.|.+. =|.|++.-.|+.|+|++..- +-+.+- -+.+. |+=+.-..+
T Consensus 245 ~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~~---~np~~~-~l~~~-~ipVlf~~d--- 316 (360)
T PF07429_consen 245 ENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLSR---DNPFWQ-DLKEQ-GIPVLFYGD--- 316 (360)
T ss_pred cceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEec---CChHHH-HHHhC-CCeEEeccc---
Confidence 356554 6777 5678899999887775 58999999999999988742 333333 34554 665543334
Q ss_pred CCcccCHhHHHHHHHHhh
Q 043290 412 GSDLVMACDIESAVRCLM 429 (430)
Q Consensus 412 ~~~~~~~~~l~~ai~~vl 429 (430)
.++.+.|++|=+++.
T Consensus 317 ---~L~~~~v~ea~rql~ 331 (360)
T PF07429_consen 317 ---ELDEALVREAQRQLA 331 (360)
T ss_pred ---cCCHHHHHHHHHHHh
Confidence 788888888877653
No 215
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=44.10 E-value=2.3e+02 Score=25.59 Aligned_cols=31 Identities=16% Similarity=0.259 Sum_probs=24.4
Q ss_pred hhhhccCceeEEEeccCchhHHHHHHhCCceeec
Q 043290 349 VEILAHKAIGGFVSHCGWNSILESLWYGVPIATW 382 (430)
Q Consensus 349 ~~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~ 382 (430)
..++.++++ +|+.-. |.++-|.+.|+|+|++
T Consensus 193 ~~li~~~~l--~I~~Ds-g~~HlA~a~~~p~i~l 223 (279)
T cd03789 193 AALLARADL--VVTNDS-GPMHLAAALGTPTVAL 223 (279)
T ss_pred HHHHHhCCE--EEeeCC-HHHHHHHHcCCCEEEE
Confidence 467788888 888843 6777778889999885
No 216
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=44.03 E-value=40 Score=30.63 Aligned_cols=48 Identities=25% Similarity=0.508 Sum_probs=36.3
Q ss_pred hhhhHHHHHHHhhccCCCCceEEEEcCCcch-----HHHHHHhcCCceEEEecc
Q 043290 94 HLPNVKNIVSSRANSGSLQVTGLVLDFFCVS-----MVDIAKELSLPSYIFLTS 142 (430)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~D~vV~D~~~~~-----~~~~A~~lgiP~v~~~~~ 142 (430)
..+.+++++++.++++ .+..+||.|.|+-. ...+|.+.+||++++.-.
T Consensus 131 ~~p~IKE~vR~~I~~A-~kVIAIVMD~FTD~dIf~DLleAa~kR~VpVYiLLD~ 183 (284)
T PF07894_consen 131 GQPHIKEVVRRMIQQA-QKVIAIVMDVFTDVDIFCDLLEAANKRGVPVYILLDE 183 (284)
T ss_pred CCCCHHHHHHHHHHHh-cceeEEEeeccccHHHHHHHHHHHHhcCCcEEEEech
Confidence 4567888888887654 48999999987764 346777999998887643
No 217
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=43.85 E-value=35 Score=33.81 Aligned_cols=37 Identities=19% Similarity=0.155 Sum_probs=27.2
Q ss_pred EEEEEcCC------CCCCHHHHHHHHHHHHhCCCCeEEEEEecCC
Q 043290 5 ELIFVPSP------GIGHLVSTLEFAKHLTDRDDRISVTLLSMKL 43 (430)
Q Consensus 5 ~i~~~~~p------~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~ 43 (430)
||++++.= ..|=-.-.-.|+++|+++||+ |+++++..
T Consensus 2 ~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G~~--v~v~~p~y 44 (473)
T TIGR02095 2 RVLFVAAEMAPFAKTGGLADVVGALPKALAALGHD--VRVLLPAY 44 (473)
T ss_pred eEEEEEeccccccCcCcHHHHHHHHHHHHHHcCCe--EEEEecCC
Confidence 47777743 234445567899999999999 88998754
No 218
>cd03416 CbiX_SirB_N Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), N-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both are found in a wide range of bacteria. This subgroup also contains single domain proteins from archaea and bacteria which may represent the ancestral form of class II chelatases before domain duplication occurred.
Probab=43.11 E-value=1.1e+02 Score=22.59 Aligned_cols=35 Identities=14% Similarity=0.233 Sum_probs=23.5
Q ss_pred EEEEeecCCccCCHHHHHHHHHHHHhC--CCcEEEEE
Q 043290 273 VVFLCFGSSGSFDVAQVKEIAIGLERS--GYNFLWSL 307 (430)
Q Consensus 273 vVyvsfGS~~~~~~~~~~~~~~al~~~--~~~~vw~~ 307 (430)
+|+++.||......+.+.++++.+++. +..+-+.+
T Consensus 2 ivlv~hGS~~~~~~~~~~~l~~~l~~~~~~~~v~~af 38 (101)
T cd03416 2 LLLVGHGSRDPRAAEALEALAERLRERLPGDEVELAF 38 (101)
T ss_pred EEEEEcCCCCHHHHHHHHHHHHHHHhhCCCCcEEEEE
Confidence 789999996644445677888888653 34554443
No 219
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=42.91 E-value=24 Score=29.92 Aligned_cols=37 Identities=30% Similarity=0.421 Sum_probs=29.9
Q ss_pred CCCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecC
Q 043290 1 MKKAELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMK 42 (430)
Q Consensus 1 m~~~~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (430)
||+ |++.-.++-|=+. ...+.+.|.++|++ |.++.++
T Consensus 1 ~k~--Ill~vtGsiaa~~-~~~li~~L~~~g~~--V~vv~T~ 37 (182)
T PRK07313 1 MKN--ILLAVSGSIAAYK-AADLTSQLTKRGYQ--VTVLMTK 37 (182)
T ss_pred CCE--EEEEEeChHHHHH-HHHHHHHHHHCCCE--EEEEECh
Confidence 554 8888888777666 89999999999998 7777766
No 220
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=42.83 E-value=2.4e+02 Score=27.85 Aligned_cols=40 Identities=25% Similarity=0.389 Sum_probs=30.4
Q ss_pred CCCcEEEEEcC-CCCCCHHHHHHHHHHHHhCCCCeEEEEEecC
Q 043290 1 MKKAELIFVPS-PGIGHLVSTLEFAKHLTDRDDRISVTLLSMK 42 (430)
Q Consensus 1 m~~~~i~~~~~-p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (430)
|+.++|++... ..-|-..-...|++.|+++|++ |..+.+.
T Consensus 1 ~~m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~--V~~fK~G 41 (451)
T PRK01077 1 MRMPALVIAAPASGSGKTTVTLGLMRALRRRGLR--VQPFKVG 41 (451)
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCC--cceeecC
Confidence 55445777654 4568999999999999999987 6667653
No 221
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=42.48 E-value=1.4e+02 Score=30.49 Aligned_cols=27 Identities=11% Similarity=0.337 Sum_probs=22.5
Q ss_pred eeEEEeccCch------hHHHHHHhCCceeecc
Q 043290 357 IGGFVSHCGWN------SILESLWYGVPIATWP 383 (430)
Q Consensus 357 ~~~~itHgG~~------s~~eal~~GvP~v~~P 383 (430)
.+++++|.|-| ++.+|...++|||++-
T Consensus 79 ~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~It 111 (571)
T PRK07710 79 PGVVIATSGPGATNVVTGLADAMIDSLPLVVFT 111 (571)
T ss_pred CeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 34589998866 6889999999999984
No 222
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=42.46 E-value=1.8e+02 Score=23.80 Aligned_cols=34 Identities=26% Similarity=0.289 Sum_probs=20.3
Q ss_pred EEEEeecCCccCCHHHHHHHHHHHHhCCCcEEEEEe
Q 043290 273 VVFLCFGSSGSFDVAQVKEIAIGLERSGYNFLWSLR 308 (430)
Q Consensus 273 vVyvsfGS~~~~~~~~~~~~~~al~~~~~~~vw~~~ 308 (430)
.|-|=+|| .-|....+++...|++.|..+-..+-
T Consensus 2 ~V~Ii~gs--~SD~~~~~~a~~~L~~~gi~~~~~V~ 35 (150)
T PF00731_consen 2 KVAIIMGS--TSDLPIAEEAAKTLEEFGIPYEVRVA 35 (150)
T ss_dssp EEEEEESS--GGGHHHHHHHHHHHHHTT-EEEEEE-
T ss_pred eEEEEeCC--HHHHHHHHHHHHHHHHcCCCEEEEEE
Confidence 34455666 33556677788888887766654443
No 223
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=42.45 E-value=1.9e+02 Score=23.80 Aligned_cols=103 Identities=15% Similarity=-0.014 Sum_probs=57.4
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCCeE-EEEEecCCCCChhhHHhhhhccCCCCCeEEEeCCCCCCCCCCCCCCC
Q 043290 4 AELIFVPSPGIGHLVSTLEFAKHLTDRDDRIS-VTLLSMKLAVAPWVDAYAKSLTDSQPRICIIDLPPVDPPLPDVLKKS 82 (430)
Q Consensus 4 ~~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~-Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 82 (430)
.-|-+++.++.|-....+.+|.+.+.+|++|. |.|+.... .. ......+++ +++++........-.. .+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~-~~-gE~~~l~~l----~~v~~~~~g~~~~~~~----~~ 72 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGW-KY-GELKALERL----PNIEIHRMGRGFFWTT----EN 72 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCC-cc-CHHHHHHhC----CCcEEEECCCCCccCC----CC
Confidence 35788999999999999999999999998844 33455531 11 111223332 4788877664421111 11
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHhhccCCCCceEEEEcCCcc
Q 043290 83 PEYFLSLVVESHLPNVKNIVSSRANSGSLQVTGLVLDFFCV 123 (430)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vV~D~~~~ 123 (430)
..+.. ......++.+-+.+ . ...+|+||-|-+..
T Consensus 73 ~~~~~----~~a~~~~~~a~~~~-~--~~~~dLlVLDEi~~ 106 (159)
T cd00561 73 DEEDI----AAAAEGWAFAKEAI-A--SGEYDLVILDEINY 106 (159)
T ss_pred hHHHH----HHHHHHHHHHHHHH-h--cCCCCEEEEechHh
Confidence 22111 11222222222222 2 24899999997654
No 224
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=42.08 E-value=2.7e+02 Score=27.23 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=21.3
Q ss_pred CceEEEEcCCcchHHHHHHhcCCceEEEe
Q 043290 112 QVTGLVLDFFCVSMVDIAKELSLPSYIFL 140 (430)
Q Consensus 112 ~~D~vV~D~~~~~~~~~A~~lgiP~v~~~ 140 (430)
++|++|.+.. ...+|+++|||++...
T Consensus 372 ~~dliiG~s~---~~~~a~~~~ip~~~~~ 397 (429)
T cd03466 372 KIDVLIGNSY---GRRIAEKLGIPLIRIG 397 (429)
T ss_pred CCCEEEECch---hHHHHHHcCCCEEEec
Confidence 7999998874 5688999999987553
No 225
>PRK08506 replicative DNA helicase; Provisional
Probab=42.04 E-value=1.5e+02 Score=29.58 Aligned_cols=37 Identities=22% Similarity=0.469 Sum_probs=32.1
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecCCC
Q 043290 6 LIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMKLA 44 (430)
Q Consensus 6 i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~ 44 (430)
+++..-|+.|--.-.+.+|...+..|+. |.|++.+..
T Consensus 195 ivIaarpg~GKT~fal~ia~~~~~~g~~--V~~fSlEMs 231 (472)
T PRK08506 195 IIIAARPSMGKTTLCLNMALKALNQDKG--VAFFSLEMP 231 (472)
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhcCCc--EEEEeCcCC
Confidence 6677888999999999999999988988 889998743
No 226
>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Probab=41.94 E-value=57 Score=27.04 Aligned_cols=30 Identities=13% Similarity=0.267 Sum_probs=22.9
Q ss_pred CCcEEEEeecCCccCCHHHHHHHHHHHHhC
Q 043290 270 ESSVVFLCFGSSGSFDVAQVKEIAIGLERS 299 (430)
Q Consensus 270 ~~~vVyvsfGS~~~~~~~~~~~~~~al~~~ 299 (430)
.+..+|+|+||......+.++..++.|...
T Consensus 6 ~~~~v~i~LGSNlg~~~~~l~~A~~~L~~~ 35 (163)
T PRK14092 6 ASALAYVGLGANLGDAAATLRSVLAELAAA 35 (163)
T ss_pred cCCEEEEEecCchHhHHHHHHHHHHHHHhC
Confidence 455899999998765667777777878764
No 227
>PRK06321 replicative DNA helicase; Provisional
Probab=41.85 E-value=1.3e+02 Score=29.96 Aligned_cols=37 Identities=19% Similarity=0.394 Sum_probs=30.4
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHh-CCCCeEEEEEecCCC
Q 043290 6 LIFVPSPGIGHLVSTLEFAKHLTD-RDDRISVTLLSMKLA 44 (430)
Q Consensus 6 i~~~~~p~~GH~~P~l~La~~L~~-rGH~v~Vt~~~~~~~ 44 (430)
+++..-|+.|--.-.+.+|...+. .|.. |.|++-+-.
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~~g~~--v~~fSLEMs 266 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQNRLP--VGIFSLEMT 266 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCe--EEEEeccCC
Confidence 567788899999999999999874 5766 889987743
No 228
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=41.78 E-value=86 Score=25.96 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=18.4
Q ss_pred CHHHHHHHHHHHHh-CCCCeEEEEE
Q 043290 16 HLVSTLEFAKHLTD-RDDRISVTLL 39 (430)
Q Consensus 16 H~~P~l~La~~L~~-rGH~v~Vt~~ 39 (430)
|.....+|+++|.+ +|++++|.++
T Consensus 1 H~~aA~Al~eal~~~~~~~~~v~v~ 25 (169)
T PF06925_consen 1 HNSAARALAEALERRRGPDAEVEVV 25 (169)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEE
Confidence 77888999999988 6777555543
No 229
>PF02016 Peptidase_S66: LD-carboxypeptidase; InterPro: IPR003507 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature is found in the Escherichia coli microcin C7 self-immunity protein mccF and in muramoyltetrapeptide carboxypeptidase (3.4.17.13 from EC, LD-carboxypeptidase A). LD-carboxypeptidase A belongs to MEROPS peptidase family S66 (clan SS). The entry also contains uncharacterised proteins including hypothetical proteins from various bacteria archaea.; PDB: 1ZRS_A 1ZL0_B 2AUM_B 2AUN_B 3TLG_A 3TLC_A 3TLZ_B 3TLY_B 3TLE_A 3TLB_B ....
Probab=41.63 E-value=26 Score=32.08 Aligned_cols=77 Identities=12% Similarity=0.236 Sum_probs=51.1
Q ss_pred cCCHHHHHHHHHHHHhCCCcEEEEEecCCCCCccccccccCCCCCCChhHHHhhcCceEEEeccchhhhhccCceeEEEe
Q 043290 283 SFDVAQVKEIAIGLERSGYNFLWSLRVSCPKDEASAHRYVTNNGVFPEGFLERIKGRGMICGWVPQVEILAHKAIGGFVS 362 (430)
Q Consensus 283 ~~~~~~~~~~~~al~~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~pq~~iL~~~~~~~~it 362 (430)
..+.+..+.+.+++++..++.||.++++.- ..++.++++.+.+-.+|+. ||=
T Consensus 45 gs~~~Ra~dL~~a~~d~~i~aI~~~rGGyg--------------------------~~rlL~~ld~~~i~~~pK~--~iG 96 (284)
T PF02016_consen 45 GSDEERAEDLNEAFADPEIDAIWCARGGYG--------------------------ANRLLPYLDYDAIRKNPKI--FIG 96 (284)
T ss_dssp S-HHHHHHHHHHHHHSTTEEEEEES--SS---------------------------GGGGGGGCHHHHHHHSG-E--EEE
T ss_pred CCHHHHHHHHHHHhcCCCCCEEEEeecccc--------------------------HHHHHhcccccccccCCCE--EEE
Confidence 456677889999999999999999887620 1245567777788888887 887
Q ss_pred ccCchhHHHHHHh--CCceeecccccc
Q 043290 363 HCGWNSILESLWY--GVPIATWPIYAE 387 (430)
Q Consensus 363 HgG~~s~~eal~~--GvP~v~~P~~~D 387 (430)
..-..+.+-+++. |.+.+-=|+..+
T Consensus 97 ySDiTaL~~al~~~~g~~t~hGp~~~~ 123 (284)
T PF02016_consen 97 YSDITALHNALYAKTGLVTFHGPMLSS 123 (284)
T ss_dssp -GGGHHHHHHHHHHHTBEEEES--HHH
T ss_pred ecchHHHHHHHHHhCCCeEEEcchhhh
Confidence 7777776767654 666666666443
No 230
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=41.22 E-value=3.1e+02 Score=25.83 Aligned_cols=39 Identities=10% Similarity=0.148 Sum_probs=34.9
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecC
Q 043290 4 AELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMK 42 (430)
Q Consensus 4 ~~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (430)
+||+++-....|++.=...+.+.|.++-.+.+|++++.+
T Consensus 6 ~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~ 44 (352)
T PRK10422 6 RRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQ 44 (352)
T ss_pred ceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEecc
Confidence 479999999999999999999999998656669999976
No 231
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=41.07 E-value=1.7e+02 Score=26.96 Aligned_cols=29 Identities=17% Similarity=0.107 Sum_probs=22.8
Q ss_pred cCceeEEEeccCchhHHHHHHh----CCceeeccc
Q 043290 354 HKAIGGFVSHCGWNSILESLWY----GVPIATWPI 384 (430)
Q Consensus 354 ~~~~~~~itHgG~~s~~eal~~----GvP~v~~P~ 384 (430)
.+++ +|+=||-||+++++.. ++|++++..
T Consensus 62 ~~d~--vi~~GGDGt~l~~~~~~~~~~~Pvlgin~ 94 (295)
T PRK01231 62 VCDL--VIVVGGDGSLLGAARALARHNVPVLGINR 94 (295)
T ss_pred CCCE--EEEEeCcHHHHHHHHHhcCCCCCEEEEeC
Confidence 3555 9999999999999763 678777664
No 232
>PRK06749 replicative DNA helicase; Provisional
Probab=40.91 E-value=1.6e+02 Score=28.93 Aligned_cols=37 Identities=19% Similarity=0.404 Sum_probs=32.3
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecCCC
Q 043290 6 LIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMKLA 44 (430)
Q Consensus 6 i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~ 44 (430)
|++-.-|+.|--.-.+.+|...+.+|.. |.+++.+-.
T Consensus 189 iiIaarPgmGKTafal~ia~~~a~~g~~--v~~fSlEMs 225 (428)
T PRK06749 189 VVLGARPSMGKTAFALNVGLHAAKSGAA--VGLFSLEMS 225 (428)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHhcCCC--EEEEEeeCC
Confidence 6778889999999999999999998977 889987743
No 233
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=40.33 E-value=35 Score=32.84 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCCeEEEEEecCC
Q 043290 13 GIGHLVSTLEFAKHLTDRDDRISVTLLSMKL 43 (430)
Q Consensus 13 ~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~ 43 (430)
..|+-.=+..++++|+++ |+ |++++-..
T Consensus 13 ~~G~~~r~~~~~~~L~~~-~~--v~l~~~~~ 40 (397)
T TIGR03087 13 NKGDKIRSFHLLRHLAAR-HR--VHLGTFVD 40 (397)
T ss_pred CCCCcEeHHHHHHHHHhc-Cc--EEEEEeCC
Confidence 558889999999999776 89 77888653
No 234
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=40.32 E-value=3.1e+02 Score=25.52 Aligned_cols=113 Identities=12% Similarity=0.063 Sum_probs=66.1
Q ss_pred EEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecCCCCChhhHHhhhhccCCCCCeEEEeCCCCCCCCCCCCCCCHHHHH
Q 043290 8 FVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMKLAVAPWVDAYAKSLTDSQPRICIIDLPPVDPPLPDVLKKSPEYFL 87 (430)
Q Consensus 8 ~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 87 (430)
.+=..-.-|+.-|-.|-+.|.++||+ |-+.+-.... ..+..+. .|+.+..+... +. ....+.+
T Consensus 4 wiDI~n~~hvhfFk~lI~elekkG~e--v~iT~rd~~~---v~~LLd~-----ygf~~~~Igk~---g~----~tl~~Kl 66 (346)
T COG1817 4 WIDIGNPPHVHFFKNLIWELEKKGHE--VLITCRDFGV---VTELLDL-----YGFPYKSIGKH---GG----VTLKEKL 66 (346)
T ss_pred EEEcCCcchhhHHHHHHHHHHhCCeE--EEEEEeecCc---HHHHHHH-----hCCCeEeeccc---CC----ccHHHHH
Confidence 34455667889999999999999999 4333322211 1122222 24665555422 11 1222122
Q ss_pred HHHHHhhhhhHHHHHHHhhccCCCCceEEEEcCCcchHHHHHHhcCCceEEEecchhH
Q 043290 88 SLVVESHLPNVKNIVSSRANSGSLQVTGLVLDFFCVSMVDIAKELSLPSYIFLTSNLG 145 (430)
Q Consensus 88 ~~~~~~~~~~~~~~l~~~~~~~~~~~D~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~ 145 (430)
-.... ....+.++..+. +||+.+. -..+.+..+|--+|+|.+.+.-...+
T Consensus 67 ~~~~e-R~~~L~ki~~~~------kpdv~i~-~~s~~l~rvafgLg~psIi~~D~ehA 116 (346)
T COG1817 67 LESAE-RVYKLSKIIAEF------KPDVAIG-KHSPELPRVAFGLGIPSIIFVDNEHA 116 (346)
T ss_pred HHHHH-HHHHHHHHHhhc------CCceEee-cCCcchhhHHhhcCCceEEecCChhH
Confidence 22211 222333444443 8999998 66777888999999999999876654
No 235
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=40.24 E-value=70 Score=27.50 Aligned_cols=37 Identities=19% Similarity=0.065 Sum_probs=32.9
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEec
Q 043290 3 KAELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSM 41 (430)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~ 41 (430)
+.+|++.+.++-.|-....-++..|..+|++ |+.+..
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~--vi~lG~ 118 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFE--VIDLGR 118 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCE--EEECCC
Confidence 5689999999999999999999999999988 766654
No 236
>PRK05595 replicative DNA helicase; Provisional
Probab=40.17 E-value=2.4e+02 Score=27.78 Aligned_cols=36 Identities=17% Similarity=0.427 Sum_probs=30.0
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHH-hCCCCeEEEEEecCC
Q 043290 6 LIFVPSPGIGHLVSTLEFAKHLT-DRDDRISVTLLSMKL 43 (430)
Q Consensus 6 i~~~~~p~~GH~~P~l~La~~L~-~rGH~v~Vt~~~~~~ 43 (430)
+++..-|+.|--.-.+.+|..++ +.|+. |.+++.+.
T Consensus 204 iviaarpg~GKT~~al~ia~~~a~~~g~~--vl~fSlEm 240 (444)
T PRK05595 204 ILIAARPSMGKTTFALNIAEYAALREGKS--VAIFSLEM 240 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHHcCCc--EEEEecCC
Confidence 56677889999999999999876 56977 88999774
No 237
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=39.56 E-value=64 Score=26.16 Aligned_cols=26 Identities=8% Similarity=0.084 Sum_probs=21.0
Q ss_pred EEEeccCch------hHHHHHHhCCceeeccc
Q 043290 359 GFVSHCGWN------SILESLWYGVPIATWPI 384 (430)
Q Consensus 359 ~~itHgG~~------s~~eal~~GvP~v~~P~ 384 (430)
++++|+|-| .+.+|...++|+|++.-
T Consensus 62 v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 62 VVLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred EEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 488887644 78899999999999853
No 238
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=39.30 E-value=30 Score=28.64 Aligned_cols=26 Identities=23% Similarity=0.448 Sum_probs=21.5
Q ss_pred eEEEeccCch------hHHHHHHhCCceeecc
Q 043290 358 GGFVSHCGWN------SILESLWYGVPIATWP 383 (430)
Q Consensus 358 ~~~itHgG~~------s~~eal~~GvP~v~~P 383 (430)
+++++|+|-| ++.||...++|||++.
T Consensus 62 gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 93 (162)
T cd07037 62 VAVVCTSGTAVANLLPAVVEAYYSGVPLLVLT 93 (162)
T ss_pred EEEEECCchHHHHHhHHHHHHHhcCCCEEEEE
Confidence 3488888855 7789999999999984
No 239
>PRK04940 hypothetical protein; Provisional
Probab=39.29 E-value=81 Score=26.65 Aligned_cols=33 Identities=9% Similarity=-0.174 Sum_probs=25.3
Q ss_pred CceEEEEcCCcc-hHHHHHHhcCCceEEEecchh
Q 043290 112 QVTGLVLDFFCV-SMVDIAKELSLPSYIFLTSNL 144 (430)
Q Consensus 112 ~~D~vV~D~~~~-~~~~~A~~lgiP~v~~~~~~~ 144 (430)
++.++|-.++-. |+.-+|+++|+|.|.+-|+..
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPAv~ 93 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPNLF 93 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCCCC
Confidence 457787776555 788999999999988876543
No 240
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=38.76 E-value=75 Score=31.47 Aligned_cols=38 Identities=16% Similarity=0.190 Sum_probs=29.6
Q ss_pred CcEEEEEcCCCCCCHHHH------------HHHHHHHHhCCCCeEEEEEecC
Q 043290 3 KAELIFVPSPGIGHLVST------------LEFAKHLTDRDDRISVTLLSMK 42 (430)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~------------l~La~~L~~rGH~v~Vt~~~~~ 42 (430)
.+||++..-|++=.+.|. ..||+++..||++ ||+++.+
T Consensus 256 gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~--VtlI~Gp 305 (475)
T PRK13982 256 GRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAE--VTLISGP 305 (475)
T ss_pred CCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCc--EEEEeCC
Confidence 346777777766666664 6889999999999 9999976
No 241
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=37.81 E-value=64 Score=22.89 Aligned_cols=30 Identities=10% Similarity=0.028 Sum_probs=27.1
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCC
Q 043290 4 AELIFVPSPGIGHLVSTLEFAKHLTDRDDR 33 (430)
Q Consensus 4 ~~i~~~~~p~~GH~~P~l~La~~L~~rGH~ 33 (430)
.-++++..+...|..=+-.+|+.|+++|..
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~ 45 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQGYA 45 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhCCCE
Confidence 358999999999999999999999999943
No 242
>TIGR01498 folK 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase. This model describes the folate biosynthesis enzyme 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase. Alternate names include 6-hydroxymethyl-7,8-dihydropterin diphosphokinase and 7,8-dihydro-6-hydroxymethylpterin pyrophosphokinase (HPPK). The extreme C-terminal region, of typically eight to thirty residues, is not included in the model. This enzyme may be found as a fusion protein with other enzymes of folate biosynthesis.
Probab=37.55 E-value=37 Score=26.84 Aligned_cols=30 Identities=10% Similarity=0.186 Sum_probs=21.7
Q ss_pred EEEeecCCccCCHHHHHHHHHHHHhCCCcE
Q 043290 274 VFLCFGSSGSFDVAQVKEIAIGLERSGYNF 303 (430)
Q Consensus 274 VyvsfGS~~~~~~~~~~~~~~al~~~~~~~ 303 (430)
+|+|+||......+.++...+.|++.+..+
T Consensus 1 ~~i~lGSN~g~~~~~l~~A~~~L~~~~~~i 30 (127)
T TIGR01498 1 AYIALGSNLGDRLKNLRAALAALAALPVRL 30 (127)
T ss_pred CEEEEeCCcHhHHHHHHHHHHHHhcCCcce
Confidence 589999987655567777777787665333
No 243
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=37.50 E-value=4e+02 Score=26.01 Aligned_cols=26 Identities=19% Similarity=0.105 Sum_probs=21.0
Q ss_pred CceEEEEcCCcchHHHHHHhcCCceEEEe
Q 043290 112 QVTGLVLDFFCVSMVDIAKELSLPSYIFL 140 (430)
Q Consensus 112 ~~D~vV~D~~~~~~~~~A~~lgiP~v~~~ 140 (430)
+||++|.+.. ...+|+++|+|++.+.
T Consensus 371 ~pdliig~~~---~~~~a~~~~ip~i~~~ 396 (428)
T cd01965 371 PVDLLIGNSH---GRYLARDLGIPLVRVG 396 (428)
T ss_pred CCCEEEECch---hHHHHHhcCCCEEEec
Confidence 7999999873 4678999999987553
No 244
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=37.24 E-value=3.1e+02 Score=24.59 Aligned_cols=30 Identities=13% Similarity=0.311 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEe
Q 043290 5 ELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLS 40 (430)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~ 40 (430)
||+++.--+-| -.||+.|.++|+ +.++++|
T Consensus 2 ~ILvlgGTtE~-----r~la~~L~~~g~-v~~sv~t 31 (249)
T PF02571_consen 2 KILVLGGTTEG-----RKLAERLAEAGY-VIVSVAT 31 (249)
T ss_pred EEEEEechHHH-----HHHHHHHHhcCC-EEEEEEh
Confidence 35555433333 478999999998 7677666
No 245
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=37.16 E-value=1.9e+02 Score=26.22 Aligned_cols=34 Identities=21% Similarity=0.200 Sum_probs=27.3
Q ss_pred chhhhhccCceeEEEeccCchhHHHHHHhCCceee
Q 043290 347 PQVEILAHKAIGGFVSHCGWNSILESLWYGVPIAT 381 (430)
Q Consensus 347 pq~~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~ 381 (430)
|+.++|+.++. .++|---.|...||.+-|+|+-+
T Consensus 237 PY~~~La~Ady-ii~TaDSinM~sEAasTgkPv~~ 270 (329)
T COG3660 237 PYIDMLAAADY-IISTADSINMCSEAASTGKPVFI 270 (329)
T ss_pred chHHHHhhcce-EEEecchhhhhHHHhccCCCeEE
Confidence 88899988886 34566667888999999999755
No 246
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=37.11 E-value=87 Score=26.75 Aligned_cols=44 Identities=11% Similarity=0.201 Sum_probs=31.0
Q ss_pred hHHHHHHHhhcc-CCCCceEEEEcCCcchHHHHHHhcCCceEEEe
Q 043290 97 NVKNIVSSRANS-GSLQVTGLVLDFFCVSMVDIAKELSLPSYIFL 140 (430)
Q Consensus 97 ~~~~~l~~~~~~-~~~~~D~vV~D~~~~~~~~~A~~lgiP~v~~~ 140 (430)
+++.+++..... ....+.+||+|---..+..-|++.|||++.+.
T Consensus 13 Nlqaiida~~~~~~~a~i~~Visd~~~A~~lerA~~~gIpt~~~~ 57 (200)
T COG0299 13 NLQAIIDAIKGGKLDAEIVAVISDKADAYALERAAKAGIPTVVLD 57 (200)
T ss_pred cHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHcCCCEEEec
Confidence 344444444321 12368899999877788999999999987664
No 247
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=36.82 E-value=2.6e+02 Score=29.99 Aligned_cols=64 Identities=16% Similarity=0.115 Sum_probs=41.3
Q ss_pred hhhccCceeEEEe---ccCch-hHHHHHHhCCc---eeecccccccchhHHHHhhhhc-eeEEeecccccCCcccCHhHH
Q 043290 350 EILAHKAIGGFVS---HCGWN-SILESLWYGVP---IATWPIYAEQQLNAFRMVKEQG-LALDLRLDYRVGSDLVMACDI 421 (430)
Q Consensus 350 ~iL~~~~~~~~it---HgG~~-s~~eal~~GvP---~v~~P~~~DQ~~~a~rv~~~~G-~G~~~~~~~~~~~~~~~~~~l 421 (430)
+++..+++ ||. .-|+| ++.|++++|+| ++++.-+. ..+.. +| -|+.++ ..+.+++
T Consensus 371 aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~---G~~~~----l~~~allVn--------P~D~~~l 433 (797)
T PLN03063 371 ALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFA---GAGQS----LGAGALLVN--------PWNITEV 433 (797)
T ss_pred HHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEeeCCc---Cchhh----hcCCeEEEC--------CCCHHHH
Confidence 45666776 664 44877 66799999999 44444221 22221 24 366666 4588999
Q ss_pred HHHHHHhhC
Q 043290 422 ESAVRCLMD 430 (430)
Q Consensus 422 ~~ai~~vl~ 430 (430)
++||.++|+
T Consensus 434 A~AI~~aL~ 442 (797)
T PLN03063 434 SSAIKEALN 442 (797)
T ss_pred HHHHHHHHh
Confidence 999988774
No 248
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=36.38 E-value=3.5e+02 Score=25.04 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=30.7
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEe
Q 043290 4 AELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLS 40 (430)
Q Consensus 4 ~~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~ 40 (430)
.+|.+-=.|+.|.-.=.=.|.++|.++||+ |.+++
T Consensus 52 ~viGITG~PGaGKSTli~~L~~~l~~~G~r--VaVlA 86 (323)
T COG1703 52 HVIGITGVPGAGKSTLIEALGRELRERGHR--VAVLA 86 (323)
T ss_pred cEEEecCCCCCchHHHHHHHHHHHHHCCcE--EEEEE
Confidence 368888899999999999999999999999 55555
No 249
>PRK08322 acetolactate synthase; Reviewed
Probab=36.16 E-value=1.3e+02 Score=30.59 Aligned_cols=28 Identities=18% Similarity=0.207 Sum_probs=23.0
Q ss_pred ceeEEEeccCch------hHHHHHHhCCceeecc
Q 043290 356 AIGGFVSHCGWN------SILESLWYGVPIATWP 383 (430)
Q Consensus 356 ~~~~~itHgG~~------s~~eal~~GvP~v~~P 383 (430)
+.+++++|.|-| ++.+|...++|||++.
T Consensus 63 ~~gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~ 96 (547)
T PRK08322 63 KAGVCLSTLGPGATNLVTGVAYAQLGGMPMVAIT 96 (547)
T ss_pred CCEEEEECCCccHhHHHHHHHHHhhcCCCEEEEe
Confidence 345589998855 8899999999999985
No 250
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=34.91 E-value=1.7e+02 Score=21.06 Aligned_cols=27 Identities=7% Similarity=0.217 Sum_probs=18.4
Q ss_pred CCceEEEEcCCc---------chHHHHHHhcCCceE
Q 043290 111 LQVTGLVLDFFC---------VSMVDIAKELSLPSY 137 (430)
Q Consensus 111 ~~~D~vV~D~~~---------~~~~~~A~~lgiP~v 137 (430)
.++|+||..+.. .....+|...|||++
T Consensus 54 g~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 54 GEIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred CCeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 489999985431 123567888899965
No 251
>PRK08760 replicative DNA helicase; Provisional
Probab=34.31 E-value=2.7e+02 Score=27.76 Aligned_cols=37 Identities=22% Similarity=0.410 Sum_probs=30.6
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHh-CCCCeEEEEEecCCC
Q 043290 6 LIFVPSPGIGHLVSTLEFAKHLTD-RDDRISVTLLSMKLA 44 (430)
Q Consensus 6 i~~~~~p~~GH~~P~l~La~~L~~-rGH~v~Vt~~~~~~~ 44 (430)
+++..-|+.|--.-.+.+|...+. .|+. |.+++.+..
T Consensus 232 ivIaarPg~GKTafal~iA~~~a~~~g~~--V~~fSlEMs 269 (476)
T PRK08760 232 IILAARPAMGKTTFALNIAEYAAIKSKKG--VAVFSMEMS 269 (476)
T ss_pred EEEEeCCCCChhHHHHHHHHHHHHhcCCc--eEEEeccCC
Confidence 667788899999999999998875 4877 889987743
No 252
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=33.72 E-value=70 Score=30.26 Aligned_cols=43 Identities=9% Similarity=0.024 Sum_probs=27.0
Q ss_pred hhhhhHHHHHHHhhccCCCCceEEE--EcCCcc-hHHHHHHhcCCceEEEec
Q 043290 93 SHLPNVKNIVSSRANSGSLQVTGLV--LDFFCV-SMVDIAKELSLPSYIFLT 141 (430)
Q Consensus 93 ~~~~~~~~~l~~~~~~~~~~~D~vV--~D~~~~-~~~~~A~~lgiP~v~~~~ 141 (430)
.....+.+.+++. +||+|| .|.... ++..+|.+++||.+.+..
T Consensus 54 ~~~~~~~~~~~~~------~Pd~Vlv~GD~~~~la~alaA~~~~ipv~Hiea 99 (346)
T PF02350_consen 54 LAIIELADVLERE------KPDAVLVLGDRNEALAAALAAFYLNIPVAHIEA 99 (346)
T ss_dssp HHHHHHHHHHHHH------T-SEEEEETTSHHHHHHHHHHHHTT-EEEEES-
T ss_pred HHHHHHHHHHHhc------CCCEEEEEcCCchHHHHHHHHHHhCCCEEEecC
Confidence 3445666666666 788776 576555 457788899999666543
No 253
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=33.67 E-value=3.9e+02 Score=25.01 Aligned_cols=38 Identities=11% Similarity=0.193 Sum_probs=33.7
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecC
Q 043290 5 ELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMK 42 (430)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (430)
||+++-..+.|++.=+..+.+.|.++=.+.+|++++.+
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~ 38 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQ 38 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECc
Confidence 58999999999999999999999998555669999976
No 254
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=33.62 E-value=81 Score=28.07 Aligned_cols=40 Identities=13% Similarity=0.244 Sum_probs=34.6
Q ss_pred CCCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecC
Q 043290 1 MKKAELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMK 42 (430)
Q Consensus 1 m~~~~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (430)
|++.+++...-++-|--.....||..|+.+|++ |.++-+.
T Consensus 1 m~~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~--vl~iD~D 40 (241)
T PRK13886 1 MAKIHMVLQGKGGVGKSFIAATIAQYKASKGQK--PLCIDTD 40 (241)
T ss_pred CCeEEEEecCCCCCcHHHHHHHHHHHHHhCCCC--EEEEECC
Confidence 788777777888999999999999999999988 7777654
No 255
>PRK09620 hypothetical protein; Provisional
Probab=33.53 E-value=61 Score=28.62 Aligned_cols=26 Identities=19% Similarity=0.160 Sum_probs=19.6
Q ss_pred CCCCHHHHHHHHHHHHhCCCCeEEEEEecC
Q 043290 13 GIGHLVSTLEFAKHLTDRDDRISVTLLSMK 42 (430)
Q Consensus 13 ~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (430)
+.|-+- ..||++|.++|++ |+++...
T Consensus 27 SSGfiG--s~LA~~L~~~Ga~--V~li~g~ 52 (229)
T PRK09620 27 AKGTIG--RIIAEELISKGAH--VIYLHGY 52 (229)
T ss_pred CcCHHH--HHHHHHHHHCCCe--EEEEeCC
Confidence 334443 6789999999998 8888754
No 256
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=33.23 E-value=96 Score=25.76 Aligned_cols=28 Identities=11% Similarity=0.095 Sum_probs=21.1
Q ss_pred eeEEEeccCc------hhHHHHHHhCCceeeccc
Q 043290 357 IGGFVSHCGW------NSILESLWYGVPIATWPI 384 (430)
Q Consensus 357 ~~~~itHgG~------~s~~eal~~GvP~v~~P~ 384 (430)
.+++++|.|- +++.+|...++|+|++.-
T Consensus 65 ~~v~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g 98 (172)
T PF02776_consen 65 PGVVIVTSGPGATNALTGLANAYADRIPVLVITG 98 (172)
T ss_dssp EEEEEEETTHHHHTTHHHHHHHHHTT-EEEEEEE
T ss_pred ceEEEeecccchHHHHHHHhhcccceeeEEEEec
Confidence 3448888874 478889999999999764
No 257
>PRK11253 ldcA L,D-carboxypeptidase A; Provisional
Probab=33.13 E-value=1.2e+02 Score=28.10 Aligned_cols=29 Identities=7% Similarity=0.048 Sum_probs=23.7
Q ss_pred CccCCHHHHHHHHHHH--HhCCCcEEEEEecC
Q 043290 281 SGSFDVAQVKEIAIGL--ERSGYNFLWSLRVS 310 (430)
Q Consensus 281 ~~~~~~~~~~~~~~al--~~~~~~~vw~~~~~ 310 (430)
.+..+.+..+.+.+++ .+. .+.||..+++
T Consensus 46 ~agtd~~Ra~dL~~a~a~~dp-i~aI~~~rGG 76 (305)
T PRK11253 46 FAGTDGERLADLNSLADLTTP-NTIVLAVRGG 76 (305)
T ss_pred cCCCHHHHHHHHHHHHhcCCC-ccEEEEeccc
Confidence 3455778899999998 666 9999999887
No 258
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=32.87 E-value=47 Score=28.25 Aligned_cols=36 Identities=17% Similarity=0.131 Sum_probs=29.7
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecC
Q 043290 5 ELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMK 42 (430)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (430)
||++.-.++.|=+.-.+.+.++|.++|++ |+++.++
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~g~~--V~vI~S~ 37 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDEGAE--VTPIVSE 37 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhCcCE--EEEEEch
Confidence 58888788777777777999999999998 7777765
No 259
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=32.71 E-value=1.4e+02 Score=21.96 Aligned_cols=37 Identities=14% Similarity=0.184 Sum_probs=23.6
Q ss_pred EEEEeecCCcc-CCHHHHHHHHHHHHhC--CCcEEEEEec
Q 043290 273 VVFLCFGSSGS-FDVAQVKEIAIGLERS--GYNFLWSLRV 309 (430)
Q Consensus 273 vVyvsfGS~~~-~~~~~~~~~~~al~~~--~~~~vw~~~~ 309 (430)
+|+++.||-.. ...+.+..+++.+++. +..+.+.+..
T Consensus 2 lllv~HGs~~~s~~~~~~~~~~~~l~~~~~~~~v~~a~~~ 41 (101)
T cd03409 2 LLVVGHGSPYKDPYKKDIEAQAHNLAESLPDFPYYVGFQS 41 (101)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHHHHHCCCCCEEEEEEC
Confidence 78888888654 4456677777777652 3455555443
No 260
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=32.50 E-value=49 Score=28.12 Aligned_cols=37 Identities=24% Similarity=0.275 Sum_probs=29.9
Q ss_pred CCCcEEEEEcCCCCCCHHHHHHHHHHHHh-CCCCeEEEEEecC
Q 043290 1 MKKAELIFVPSPGIGHLVSTLEFAKHLTD-RDDRISVTLLSMK 42 (430)
Q Consensus 1 m~~~~i~~~~~p~~GH~~P~l~La~~L~~-rGH~v~Vt~~~~~ 42 (430)
||+ |++.-.++-| ..=...|+++|.+ .||+ |.++.++
T Consensus 1 ~k~--IllgVTGsia-a~ka~~l~~~L~k~~g~~--V~vv~T~ 38 (185)
T PRK06029 1 MKR--LIVGISGASG-AIYGVRLLQVLRDVGEIE--THLVISQ 38 (185)
T ss_pred CCE--EEEEEECHHH-HHHHHHHHHHHHhhcCCe--EEEEECH
Confidence 554 8888888777 5569999999999 5988 8788876
No 261
>PLN02316 synthase/transferase
Probab=32.06 E-value=77 Score=34.75 Aligned_cols=39 Identities=13% Similarity=0.192 Sum_probs=27.9
Q ss_pred CcEEEEEcC---C---CCCCHHHHHHHHHHHHhCCCCeEEEEEecCC
Q 043290 3 KAELIFVPS---P---GIGHLVSTLEFAKHLTDRDDRISVTLLSMKL 43 (430)
Q Consensus 3 ~~~i~~~~~---p---~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~ 43 (430)
.+||++++. | ..|=-.-.-.|+++|+++||+ |.++++..
T Consensus 587 pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~--V~VitP~Y 631 (1036)
T PLN02316 587 PMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHN--VDIILPKY 631 (1036)
T ss_pred CcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCE--EEEEecCC
Confidence 467888763 2 223333457899999999999 88999764
No 262
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.98 E-value=1.4e+02 Score=27.34 Aligned_cols=32 Identities=6% Similarity=0.002 Sum_probs=24.1
Q ss_pred hhccCceeEEEeccCchhHHHHHHh----CCceeeccc
Q 043290 351 ILAHKAIGGFVSHCGWNSILESLWY----GVPIATWPI 384 (430)
Q Consensus 351 iL~~~~~~~~itHgG~~s~~eal~~----GvP~v~~P~ 384 (430)
+...+++ +|+-||-||++.|+.. ++|++++-.
T Consensus 61 ~~~~~Dl--vi~iGGDGT~L~aa~~~~~~~~PilGIN~ 96 (287)
T PRK14077 61 LFKISDF--LISLGGDGTLISLCRKAAEYDKFVLGIHA 96 (287)
T ss_pred cccCCCE--EEEECCCHHHHHHHHHhcCCCCcEEEEeC
Confidence 3345666 9999999999988763 778887653
No 263
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.93 E-value=2.6e+02 Score=24.87 Aligned_cols=42 Identities=19% Similarity=0.205 Sum_probs=29.1
Q ss_pred HHhhhhhHHHHHHHhhccCCCCceEEEEcCCcch---HHHHHHhcCCceE
Q 043290 91 VESHLPNVKNIVSSRANSGSLQVTGLVLDFFCVS---MVDIAKELSLPSY 137 (430)
Q Consensus 91 ~~~~~~~~~~~l~~~~~~~~~~~D~vV~D~~~~~---~~~~A~~lgiP~v 137 (430)
+..-...++.+++++. +-++.+.|.-+.+ +..+|+..|||++
T Consensus 133 ~tsn~~aM~~~m~~Lk-----~r~l~flDs~T~a~S~a~~iAk~~gVp~~ 177 (250)
T COG2861 133 FTSNEDAMEKLMEALK-----ERGLYFLDSGTIANSLAGKIAKEIGVPVI 177 (250)
T ss_pred hcCcHHHHHHHHHHHH-----HCCeEEEcccccccchhhhhHhhcCCcee
Confidence 3344456666677763 4677888987765 4578999999955
No 264
>PRK02395 hypothetical protein; Provisional
Probab=31.89 E-value=3.9e+02 Score=24.32 Aligned_cols=98 Identities=10% Similarity=0.007 Sum_probs=54.7
Q ss_pred cEEEEeecCC-ccCCHHHHHHHHHHHHhC-CCc-EEEEEecCCCCCccccccccCCCCCCChhHHHhhcCceEEEeccch
Q 043290 272 SVVFLCFGSS-GSFDVAQVKEIAIGLERS-GYN-FLWSLRVSCPKDEASAHRYVTNNGVFPEGFLERIKGRGMICGWVPQ 348 (430)
Q Consensus 272 ~vVyvsfGS~-~~~~~~~~~~~~~al~~~-~~~-~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~pq 348 (430)
.+|+|+-||- .....+.+..+++.+++. +.. +-..+-.. +..+++.+.+-..+++.|+++
T Consensus 3 ~lllvgHGSrr~~~~~~~~~~la~~l~~~~~~~~v~~~fle~--------------~P~l~~~l~~l~~~~ivVvPl--- 65 (279)
T PRK02395 3 ALVLVGHGSHLNPDSALPTYAHAETIRARGLFDEVREGFWKE--------------EPSLRQVLRTVESDEVYVVPL--- 65 (279)
T ss_pred eEEEEeCCCCCCcchHHHHHHHHHHHHhcCCCCeEEEeeccC--------------CCCHHHHHHhcCcCcEEEEee---
Confidence 5899999995 344567788899988652 222 21111111 123444443222345666664
Q ss_pred hhhhccCceeEEEeccCchh--HHHHHHh----------------CCceeecccccccchhHHHHhh
Q 043290 349 VEILAHKAIGGFVSHCGWNS--ILESLWY----------------GVPIATWPIYAEQQLNAFRMVK 397 (430)
Q Consensus 349 ~~iL~~~~~~~~itHgG~~s--~~eal~~----------------GvP~v~~P~~~DQ~~~a~rv~~ 397 (430)
|+.+|++-. +-+.+.. |+-+...|-.++.+.....+.+
T Consensus 66 -----------fL~~G~Hv~~DIP~~l~~~~~~~~~~~~~~~~~~~~~i~~~~plG~~p~l~~~l~~ 121 (279)
T PRK02395 66 -----------FISEGYFTEQVIPRELGLGHDGPVADRGTLRALDGKTVHYTGPVGTHPAMADVIAA 121 (279)
T ss_pred -----------EeccccchhhhhHHHhcCCcCCccccccccccCCCceEEeCCCCCCChHHHHHHHH
Confidence 777777633 3333322 6677777667766666554433
No 265
>PRK00911 dihydroxy-acid dehydratase; Provisional
Probab=31.74 E-value=4.1e+02 Score=26.98 Aligned_cols=43 Identities=23% Similarity=0.248 Sum_probs=30.8
Q ss_pred HHHHHHhhccCCCCceEEE----EcCCcchHHHHHHhcCCceEEEecch
Q 043290 99 KNIVSSRANSGSLQVTGLV----LDFFCVSMVDIAKELSLPSYIFLTSN 143 (430)
Q Consensus 99 ~~~l~~~~~~~~~~~D~vV----~D~~~~~~~~~A~~lgiP~v~~~~~~ 143 (430)
.+.++...+ .+.+|.+| ||-..++.++.|.++++|.+++...+
T Consensus 98 A~~iE~~~~--a~~~Dg~V~l~~CDK~~Pg~lMaaarlniPsi~v~gGp 144 (552)
T PRK00911 98 ADSIETVVN--AHWFDGLVAIPGCDKNMPGMLMAAARLNVPSIFVYGGP 144 (552)
T ss_pred HHHHHHHhh--CCCcceEEEeccCCCCcHHHHHHHHhcCCCEEEEeCCC
Confidence 334444433 34788877 78788888889999999988876544
No 266
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=31.61 E-value=4e+02 Score=26.55 Aligned_cols=23 Identities=13% Similarity=0.011 Sum_probs=19.7
Q ss_pred CceEEEEcCCcchHHHHHHhcCCceE
Q 043290 112 QVTGLVLDFFCVSMVDIAKELSLPSY 137 (430)
Q Consensus 112 ~~D~vV~D~~~~~~~~~A~~lgiP~v 137 (430)
+||++|.. .....+|+++|||++
T Consensus 393 ~pDliig~---s~~~~~a~k~giP~~ 415 (475)
T PRK14478 393 KADIMLSG---GRSQFIALKAGMPWL 415 (475)
T ss_pred CCCEEEec---CchhhhhhhcCCCEE
Confidence 89999987 466788999999977
No 267
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.60 E-value=1.3e+02 Score=27.81 Aligned_cols=29 Identities=14% Similarity=0.181 Sum_probs=23.9
Q ss_pred cCceeEEEeccCchhHHHHHHh----CCceeeccc
Q 043290 354 HKAIGGFVSHCGWNSILESLWY----GVPIATWPI 384 (430)
Q Consensus 354 ~~~~~~~itHgG~~s~~eal~~----GvP~v~~P~ 384 (430)
++++ +|+-||-||+++++.. ++|++++..
T Consensus 57 ~~d~--vi~~GGDGT~l~~~~~~~~~~~pv~gin~ 89 (305)
T PRK02645 57 LIDL--AIVLGGDGTVLAAARHLAPHDIPILSVNV 89 (305)
T ss_pred CcCE--EEEECCcHHHHHHHHHhccCCCCEEEEec
Confidence 4555 9999999999999864 789888765
No 268
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=31.59 E-value=3.8e+02 Score=26.28 Aligned_cols=39 Identities=15% Similarity=0.174 Sum_probs=32.7
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecCCCC
Q 043290 5 ELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMKLAV 45 (430)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~ 45 (430)
-|+|+-.++.|-..-...||..|..+|++ |.+++.....
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~~G~k--V~lV~~D~~R 140 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQRKGFK--PCLVCADTFR 140 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCC--EEEEcCcccc
Confidence 46777778999999999999999999988 8888875433
No 269
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=31.52 E-value=3.8e+02 Score=23.97 Aligned_cols=29 Identities=10% Similarity=0.073 Sum_probs=20.0
Q ss_pred CCceEEEEcCCcch-------HHHHHHhcCCceEEEe
Q 043290 111 LQVTGLVLDFFCVS-------MVDIAKELSLPSYIFL 140 (430)
Q Consensus 111 ~~~D~vV~D~~~~~-------~~~~A~~lgiP~v~~~ 140 (430)
+++++|| |..-++ +..+++++|||++.|.
T Consensus 64 ~~i~~VI-DATHPfA~~is~~a~~ac~~~~ipyiR~e 99 (248)
T PRK08057 64 EGIDLVI-DATHPYAAQISANAAAACRALGIPYLRLE 99 (248)
T ss_pred CCCCEEE-ECCCccHHHHHHHHHHHHHHhCCcEEEEe
Confidence 3777764 544443 3467789999999885
No 270
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=31.46 E-value=87 Score=31.12 Aligned_cols=28 Identities=11% Similarity=0.177 Sum_probs=22.0
Q ss_pred ccCceeEEEeccCchhHHHHHHh----CCceeec
Q 043290 353 AHKAIGGFVSHCGWNSILESLWY----GVPIATW 382 (430)
Q Consensus 353 ~~~~~~~~itHgG~~s~~eal~~----GvP~v~~ 382 (430)
..+++ +|+=||-||++.|... ++|++++
T Consensus 261 ~~~Dl--VIsiGGDGTlL~Aar~~~~~~iPILGI 292 (508)
T PLN02935 261 TKVDL--VITLGGDGTVLWAASMFKGPVPPVVPF 292 (508)
T ss_pred cCCCE--EEEECCcHHHHHHHHHhccCCCcEEEE
Confidence 34566 9999999999999874 5677765
No 271
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=31.14 E-value=6e+02 Score=26.09 Aligned_cols=51 Identities=20% Similarity=0.226 Sum_probs=30.6
Q ss_pred ccCchh-HHHHHH-hC--Cceeeccc---ccccchhHHHHhhhhceeEEeecccccCCcccCHhHHHHHHHHhh
Q 043290 363 HCGWNS-ILESLW-YG--VPIATWPI---YAEQQLNAFRMVKEQGLALDLRLDYRVGSDLVMACDIESAVRCLM 429 (430)
Q Consensus 363 HgG~~s-~~eal~-~G--vP~v~~P~---~~DQ~~~a~rv~~~~G~G~~~~~~~~~~~~~~~~~~l~~ai~~vl 429 (430)
+||.|| +.|.|. +| +|++.+.+ |.||-.-....++. .++++.|.+.|.+.+
T Consensus 565 ~GG~Gs~v~efl~~~~~~~~v~~lglpd~fi~hg~~~el~~~~----------------gLd~~~i~~~i~~~l 622 (627)
T COG1154 565 DGGFGSAVLEFLAAHGILVPVLNLGLPDEFIDHGSPEELLAEL----------------GLDAEGIARRILEWL 622 (627)
T ss_pred cccHHHHHHHHHHhcCCCCceEEecCChHhhccCCHHHHHHHc----------------CCCHHHHHHHHHHHH
Confidence 899886 455553 45 56655443 44555554443332 467788888877654
No 272
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=30.70 E-value=46 Score=28.29 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=19.6
Q ss_pred EcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecC
Q 043290 9 VPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMK 42 (430)
Q Consensus 9 ~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (430)
++-++.|.+- ..||+++..|||+ ||+++.+
T Consensus 23 ItN~SSG~~G--~~lA~~~~~~Ga~--V~li~g~ 52 (185)
T PF04127_consen 23 ITNRSSGKMG--AALAEEAARRGAE--VTLIHGP 52 (185)
T ss_dssp EEES--SHHH--HHHHHHHHHTT-E--EEEEE-T
T ss_pred ecCCCcCHHH--HHHHHHHHHCCCE--EEEEecC
Confidence 3334444443 6789999999999 9999976
No 273
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=30.55 E-value=4.3e+02 Score=25.65 Aligned_cols=24 Identities=21% Similarity=0.052 Sum_probs=19.3
Q ss_pred CceEEEEcCCcchHHHHHHhcCCceEE
Q 043290 112 QVTGLVLDFFCVSMVDIAKELSLPSYI 138 (430)
Q Consensus 112 ~~D~vV~D~~~~~~~~~A~~lgiP~v~ 138 (430)
+||++|... ....+|+++|+|++.
T Consensus 356 ~pDl~ig~s---~~~~~a~~~gip~~~ 379 (410)
T cd01968 356 KADLLVAGG---KERYLALKLGIPFCD 379 (410)
T ss_pred CCCEEEECC---cchhhHHhcCCCEEE
Confidence 799999884 345789999999763
No 274
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=30.17 E-value=1.1e+02 Score=25.37 Aligned_cols=38 Identities=24% Similarity=0.371 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecC
Q 043290 4 AELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMK 42 (430)
Q Consensus 4 ~~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (430)
.+|++++-++ -.=-=-+.+|+.|+++|.+|+|-++.+.
T Consensus 26 ~~v~il~G~G-nNGgDgl~~AR~L~~~G~~V~v~~~~~~ 63 (169)
T PF03853_consen 26 PRVLILCGPG-NNGGDGLVAARHLANRGYNVTVYLVGPP 63 (169)
T ss_dssp -EEEEEE-SS-HHHHHHHHHHHHHHHTTCEEEEEEEESS
T ss_pred CeEEEEECCC-CChHHHHHHHHHHHHCCCeEEEEEEecc
Confidence 4566666553 1122357899999999988443234443
No 275
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=30.11 E-value=4.1e+02 Score=26.83 Aligned_cols=27 Identities=15% Similarity=-0.071 Sum_probs=21.7
Q ss_pred CCceEEEEcCCcchHHHHHHhcCCceEEEe
Q 043290 111 LQVTGLVLDFFCVSMVDIAKELSLPSYIFL 140 (430)
Q Consensus 111 ~~~D~vV~D~~~~~~~~~A~~lgiP~v~~~ 140 (430)
.++|++|.+. .+..+|+++|||.+.+.
T Consensus 436 ~~~DlliG~s---~~k~~a~~~giPlir~g 462 (515)
T TIGR01286 436 EPVDFLIGNS---YGKYIQRDTLVPLIRIG 462 (515)
T ss_pred cCCCEEEECc---hHHHHHHHcCCCEEEec
Confidence 3899999876 45778999999987664
No 276
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=30.06 E-value=65 Score=31.24 Aligned_cols=29 Identities=28% Similarity=0.363 Sum_probs=23.9
Q ss_pred cCCCCCCHHHHHHHHHHHHhCCCCeEEEEEe
Q 043290 10 PSPGIGHLVSTLEFAKHLTDRDDRISVTLLS 40 (430)
Q Consensus 10 ~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~ 40 (430)
+..+.|-..-.+.|.++|++||++ |.-+.
T Consensus 8 ~~SG~GKTTvT~glm~aL~~rg~~--VqpfK 36 (451)
T COG1797 8 TSSGSGKTTVTLGLMRALRRRGLK--VQPFK 36 (451)
T ss_pred CCCCCcHHHHHHHHHHHHHhcCCc--ccccc
Confidence 445679999999999999999988 55554
No 277
>PRK10867 signal recognition particle protein; Provisional
Probab=29.86 E-value=3.7e+02 Score=26.41 Aligned_cols=38 Identities=21% Similarity=0.351 Sum_probs=32.0
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhC-CCCeEEEEEecCCC
Q 043290 5 ELIFVPSPGIGHLVSTLEFAKHLTDR-DDRISVTLLSMKLA 44 (430)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~La~~L~~r-GH~v~Vt~~~~~~~ 44 (430)
-|+++-.++.|-..-...||..|+.+ |++ |.+++....
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~~G~k--V~lV~~D~~ 140 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKKKKKK--VLLVAADVY 140 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhcCCc--EEEEEcccc
Confidence 46777778999999999999999999 988 888887543
No 278
>PLN02880 tyrosine decarboxylase
Probab=29.81 E-value=90 Score=31.21 Aligned_cols=70 Identities=13% Similarity=0.038 Sum_probs=42.7
Q ss_pred eeEEEeccCchhHHHHHHhCC------------ceeeccccccc-chhHHHHhhhhcee----EEeecccccCCcccCHh
Q 043290 357 IGGFVSHCGWNSILESLWYGV------------PIATWPIYAEQ-QLNAFRMVKEQGLA----LDLRLDYRVGSDLVMAC 419 (430)
Q Consensus 357 ~~~~itHgG~~s~~eal~~Gv------------P~v~~P~~~DQ-~~~a~rv~~~~G~G----~~~~~~~~~~~~~~~~~ 419 (430)
.++++|.||..+.+.||.... +-+++- ..|| ..--.+.+..+|+| +.++.+. .+...++.+
T Consensus 147 ~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~-~S~~aH~Sv~Kaa~~lGlg~~~v~~Vp~d~-~~~~~md~~ 224 (490)
T PLN02880 147 GGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVY-ASDQTHSALQKACQIAGIHPENCRLLKTDS-STNYALAPE 224 (490)
T ss_pred CceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEE-EcCCchHHHHHHHHHcCCCHHHEEEeecCC-CcCCcCCHH
Confidence 346899999998888876532 222222 2333 23334456678998 3455431 113479999
Q ss_pred HHHHHHHHh
Q 043290 420 DIESAVRCL 428 (430)
Q Consensus 420 ~l~~ai~~v 428 (430)
.|+++|++.
T Consensus 225 ~L~~~i~~~ 233 (490)
T PLN02880 225 LLSEAISTD 233 (490)
T ss_pred HHHHHHHHH
Confidence 999999864
No 279
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=29.70 E-value=3.4e+02 Score=24.92 Aligned_cols=58 Identities=9% Similarity=-0.072 Sum_probs=37.0
Q ss_pred EEeccCchhHHHHHHhCCceeeccccc--ccchhHHHHhhhhceeEEeecccccCCcccCHhHHHHHHHH
Q 043290 360 FVSHCGWNSILESLWYGVPIATWPIYA--EQQLNAFRMVKEQGLALDLRLDYRVGSDLVMACDIESAVRC 427 (430)
Q Consensus 360 ~itHgG~~s~~eal~~GvP~v~~P~~~--DQ~~~a~rv~~~~G~G~~~~~~~~~~~~~~~~~~l~~ai~~ 427 (430)
.=-+.|.+.+..|+.+|+..-++-++. +..+-+.-+.+. - +.+.. .-|.++|.+.+.+
T Consensus 198 LP~~rG~~~~~~ai~~G~~~tG~TvH~v~~~~D~G~Ii~Q~-~--v~I~~-------~dt~~~L~~r~~~ 257 (286)
T PRK13011 198 LPGFKGAKPYHQAYERGVKLIGATAHYVTDDLDEGPIIEQD-V--ERVDH-------AYSPEDLVAKGRD 257 (286)
T ss_pred CCCCCCCcHHHHHHHCCCCeEEEEEEEEcCCCcCCCcEEEE-E--EEcCC-------CCCHHHHHHHHHH
Confidence 444568899999999999998888654 333444333332 2 33332 3478888877765
No 280
>PRK09165 replicative DNA helicase; Provisional
Probab=29.63 E-value=3.6e+02 Score=27.02 Aligned_cols=37 Identities=16% Similarity=0.334 Sum_probs=29.7
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhC---------------CCCeEEEEEecCCC
Q 043290 6 LIFVPSPGIGHLVSTLEFAKHLTDR---------------DDRISVTLLSMKLA 44 (430)
Q Consensus 6 i~~~~~p~~GH~~P~l~La~~L~~r---------------GH~v~Vt~~~~~~~ 44 (430)
+++..-|+.|--.-.+.+|...+.+ |.. |.+++.+..
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~--vl~fSlEMs 271 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGV--VGFFSLEMS 271 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCe--EEEEeCcCC
Confidence 5677788999999999999988754 655 889987743
No 281
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=29.27 E-value=89 Score=30.60 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=21.8
Q ss_pred eeEEEeccCch------hHHHHHHhCCceeec
Q 043290 357 IGGFVSHCGWN------SILESLWYGVPIATW 382 (430)
Q Consensus 357 ~~~~itHgG~~------s~~eal~~GvP~v~~ 382 (430)
.+++++|+|-| ++.+|.+.++|||++
T Consensus 64 ~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i 95 (432)
T TIGR00173 64 PVAVVCTSGTAVANLLPAVIEASYSGVPLIVL 95 (432)
T ss_pred CEEEEECCcchHhhhhHHHHHhcccCCcEEEE
Confidence 34488888855 788999999999998
No 282
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=29.17 E-value=1.9e+02 Score=26.50 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=18.0
Q ss_pred HHHHHHHHhCCCCeEEEEEecCCCC
Q 043290 21 LEFAKHLTDRDDRISVTLLSMKLAV 45 (430)
Q Consensus 21 l~La~~L~~rGH~v~Vt~~~~~~~~ 45 (430)
.++|..++++|++ |-++++.+.+
T Consensus 3 ~a~a~~~a~~g~~--vllv~~Dp~~ 25 (284)
T TIGR00345 3 CATAIRLAEQGKK--VLLVSTDPAH 25 (284)
T ss_pred HHHHHHHHHCCCe--EEEEECCCCC
Confidence 4688899999988 8788876444
No 283
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=29.11 E-value=5.1e+02 Score=24.70 Aligned_cols=127 Identities=14% Similarity=0.077 Sum_probs=72.7
Q ss_pred EEEeecCCccCCHHHHHHHHHHHHhCCCcEEEEEecCCCCCccccccccCCCCCCChhHHHhhcCceEEEecc-chhhhh
Q 043290 274 VFLCFGSSGSFDVAQVKEIAIGLERSGYNFLWSLRVSCPKDEASAHRYVTNNGVFPEGFLERIKGRGMICGWV-PQVEIL 352 (430)
Q Consensus 274 VyvsfGS~~~~~~~~~~~~~~al~~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-pq~~iL 352 (430)
++|. |--...+.+++.+.++.++..+.+++-..-...+. -|.+|. +.-.+|. -...+.
T Consensus 120 ~~ia-Gpc~iE~~~~~~~~A~~lk~~g~~~~r~~~~kpRt--------------sp~~f~------g~~~e~l~~L~~~~ 178 (360)
T PRK12595 120 SFIF-GPCSVESYEQVEAVAKALKAKGLKLLRGGAFKPRT--------------SPYDFQ------GLGVEGLKILKQVA 178 (360)
T ss_pred eeEE-ecccccCHHHHHHHHHHHHHcCCcEEEccccCCCC--------------CCcccc------CCCHHHHHHHHHHH
Confidence 3344 65556678889999999999988877543222110 111110 0000111 112223
Q ss_pred ccCceeEEEeccCchhHHHHHHhCCceeeccccc-ccchhHHHHhhhhceeEEeecccccCCcc-cCHhHHHHHHHHhh
Q 043290 353 AHKAIGGFVSHCGWNSILESLWYGVPIATWPIYA-EQQLNAFRMVKEQGLALDLRLDYRVGSDL-VMACDIESAVRCLM 429 (430)
Q Consensus 353 ~~~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~-DQ~~~a~rv~~~~G~G~~~~~~~~~~~~~-~~~~~l~~ai~~vl 429 (430)
....+.++-+=...-++-....+ ++++-+|-+- .|......+++. |.=+.+++. . .+.+++..|++.+.
T Consensus 179 ~~~Gl~~~t~v~d~~~~~~l~~~-vd~lkI~s~~~~n~~LL~~~a~~-gkPVilk~G------~~~t~~e~~~Ave~i~ 249 (360)
T PRK12595 179 DEYGLAVISEIVNPADVEVALDY-VDVIQIGARNMQNFELLKAAGRV-NKPVLLKRG------LSATIEEFIYAAEYIM 249 (360)
T ss_pred HHcCCCEEEeeCCHHHHHHHHHh-CCeEEECcccccCHHHHHHHHcc-CCcEEEeCC------CCCCHHHHHHHHHHHH
Confidence 33344445555555566666677 8888888544 455555566654 766777764 4 58899999988764
No 284
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=28.92 E-value=3.1e+02 Score=25.18 Aligned_cols=57 Identities=9% Similarity=-0.080 Sum_probs=37.1
Q ss_pred eccCchhHHHHHHhCCceeeccccc--ccchhHHHHhhhhceeEEeecccccCCcccCHhHHHHHHHHh
Q 043290 362 SHCGWNSILESLWYGVPIATWPIYA--EQQLNAFRMVKEQGLALDLRLDYRVGSDLVMACDIESAVRCL 428 (430)
Q Consensus 362 tHgG~~s~~eal~~GvP~v~~P~~~--DQ~~~a~rv~~~~G~G~~~~~~~~~~~~~~~~~~l~~ai~~v 428 (430)
-..|.+....|+.+|+-..++-++. +..+.+.-+.+. - +.+.. .-|.++|.+.+.++
T Consensus 204 ~f~G~~~~~~ai~~G~k~tG~TvH~v~~~lD~GpII~Q~-~--v~V~~-------~dt~e~L~~r~~~~ 262 (289)
T PRK13010 204 GFKGARPYHQAHARGVKLIGATAHFVTDDLDEGPIIEQD-V--ERVDH-------SYSPEDLVAKGRDV 262 (289)
T ss_pred CCCCCCHHHHHHHcCCCeEEEEEEEEcCCCCCCCceEEE-E--EEcCC-------CCCHHHHHHHHHHH
Confidence 3468899999999999999988654 444555444443 2 23332 34778877776653
No 285
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=28.90 E-value=2.6e+02 Score=28.53 Aligned_cols=27 Identities=11% Similarity=0.139 Sum_probs=22.1
Q ss_pred eeEEEeccCch------hHHHHHHhCCceeecc
Q 043290 357 IGGFVSHCGWN------SILESLWYGVPIATWP 383 (430)
Q Consensus 357 ~~~~itHgG~~------s~~eal~~GvP~v~~P 383 (430)
.+++++|.|-| ++.+|...++|||++.
T Consensus 77 ~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 77 PAVCMACSGPGATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred CeEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 34488887755 7899999999999984
No 286
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=28.71 E-value=1.6e+02 Score=28.58 Aligned_cols=44 Identities=16% Similarity=0.031 Sum_probs=34.6
Q ss_pred eEEEeccchhhhhccCce--eEEEeccCchhHHHHHHhCCceeecc
Q 043290 340 GMICGWVPQVEILAHKAI--GGFVSHCGWNSILESLWYGVPIATWP 383 (430)
Q Consensus 340 ~~v~~~~pq~~iL~~~~~--~~~itHgG~~s~~eal~~GvP~v~~P 383 (430)
-.|.+|.=+..+|..++- =+-+||||--++-.|+..|.=+|+=.
T Consensus 465 davsDwp~lnallntA~GatwvslHhGGGvgmG~s~h~G~viVaDG 510 (561)
T COG2987 465 DAVSDWPLLNALLNTASGATWVSLHHGGGVGMGFSQHAGMVIVADG 510 (561)
T ss_pred chhhhhHHHHHHhhhccCCcEEEEecCCcccccccccCceEEEecC
Confidence 356799889999975542 34789999999999999998777643
No 287
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=28.54 E-value=43 Score=29.88 Aligned_cols=24 Identities=17% Similarity=0.149 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhCCCCeEEEEEecCC
Q 043290 18 VSTLEFAKHLTDRDDRISVTLLSMKL 43 (430)
Q Consensus 18 ~P~l~La~~L~~rGH~v~Vt~~~~~~ 43 (430)
.-.-.|+++|+++||+ |++++|..
T Consensus 20 dv~~~L~kaL~~~G~~--V~Vi~P~y 43 (245)
T PF08323_consen 20 DVVGSLPKALAKQGHD--VRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHTT-E--EEEEEE-T
T ss_pred HHHHHHHHHHHhcCCe--EEEEEccc
Confidence 4456899999999999 88999764
No 288
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=28.47 E-value=2.1e+02 Score=29.16 Aligned_cols=27 Identities=11% Similarity=0.084 Sum_probs=22.3
Q ss_pred eeEEEeccCch------hHHHHHHhCCceeecc
Q 043290 357 IGGFVSHCGWN------SILESLWYGVPIATWP 383 (430)
Q Consensus 357 ~~~~itHgG~~------s~~eal~~GvP~v~~P 383 (430)
.+++++|.|-| ++++|...++|+|++-
T Consensus 72 ~gv~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~ 104 (557)
T PRK08199 72 PGICFVTRGPGATNASIGVHTAFQDSTPMILFV 104 (557)
T ss_pred CEEEEeCCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 34499998855 7899999999999873
No 289
>COG1400 SEC65 Signal recognition particle 19 kDa protein [Intracellular trafficking and secretion]
Probab=28.43 E-value=44 Score=24.65 Aligned_cols=41 Identities=24% Similarity=0.379 Sum_probs=25.4
Q ss_pred eeecccccccchhHHHHhhhhceeEEeecccccCCcccCHhHHHHHHHHh
Q 043290 379 IATWPIYAEQQLNAFRMVKEQGLALDLRLDYRVGSDLVMACDIESAVRCL 428 (430)
Q Consensus 379 ~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~~~~~~~~~~~~~~l~~ai~~v 428 (430)
+|+||..+|+..-- --|..++++.-. ...+.++|++|++++
T Consensus 4 ~vlwp~YfDs~~sr-------s~GRrvpk~laV--~~P~~~ei~~a~~~L 44 (93)
T COG1400 4 IVLWPAYFDSDLSR-------SEGRRVPKELAV--ENPSLEEIAEALREL 44 (93)
T ss_pred eEEeehhhcCccCh-------hhccccchhhcc--cCCCHHHHHHHHHHc
Confidence 68899999886321 113333332100 167899999999875
No 290
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=28.38 E-value=64 Score=29.97 Aligned_cols=35 Identities=14% Similarity=0.120 Sum_probs=27.1
Q ss_pred CCCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecC
Q 043290 1 MKKAELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMK 42 (430)
Q Consensus 1 m~~~~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (430)
|.++||+++=.++.| ..+|..|++.||+ |+++...
T Consensus 3 ~~~m~I~IiG~GaiG-----~~lA~~L~~~g~~--V~~~~r~ 37 (313)
T PRK06249 3 SETPRIGIIGTGAIG-----GFYGAMLARAGFD--VHFLLRS 37 (313)
T ss_pred CcCcEEEEECCCHHH-----HHHHHHHHHCCCe--EEEEEeC
Confidence 456789999777666 4567889999999 8888854
No 291
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=28.34 E-value=28 Score=31.71 Aligned_cols=91 Identities=22% Similarity=0.316 Sum_probs=59.4
Q ss_pred HhHHHHHhhcCCCCcEEEEeecCCccCCHHHHHHHHHHHHhCCCcEEEEEecCCCCCccccccccCCCCCCChhHHHhhc
Q 043290 258 YQKIFQWLDDLAESSVVFLCFGSSGSFDVAQVKEIAIGLERSGYNFLWSLRVSCPKDEASAHRYVTNNGVFPEGFLERIK 337 (430)
Q Consensus 258 ~~~l~~~l~~~~~~~vVyvsfGS~~~~~~~~~~~~~~al~~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (430)
.+-...|||..-.-+.-|+.=+.+ .+.++|..++-..+++++.. +|
T Consensus 28 n~fy~l~Ld~~~~Yscayf~~~~~-tL~eAQ~~k~~~~~~kl~L~---------------------------~G------ 73 (283)
T COG2230 28 NDFYRLFLDPSMTYSCAYFEDPDM-TLEEAQRAKLDLILEKLGLK---------------------------PG------ 73 (283)
T ss_pred hHHHHHhcCCCCceeeEEeCCCCC-ChHHHHHHHHHHHHHhcCCC---------------------------CC------
Confidence 455667888754445666544443 56677777776666665432 11
Q ss_pred CceEEEeccchhhhhccCceeEEEeccCchhHH--HHHHhCCceeecccccccchhHHH-Hhhhhcee
Q 043290 338 GRGMICGWVPQVEILAHKAIGGFVSHCGWNSIL--ESLWYGVPIATWPIYAEQQLNAFR-MVKEQGLA 402 (430)
Q Consensus 338 ~~~~v~~~~pq~~iL~~~~~~~~itHgG~~s~~--eal~~GvP~v~~P~~~DQ~~~a~r-v~~~~G~G 402 (430)
-+| .=--||||+++ -|-.+||=++++-+...|..++.. +.+. |+-
T Consensus 74 --~~l-----------------LDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~-gl~ 121 (283)
T COG2230 74 --MTL-----------------LDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAAR-GLE 121 (283)
T ss_pred --CEE-----------------EEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHc-CCC
Confidence 011 22247888654 566679999999999999999988 4544 877
No 292
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=28.21 E-value=3.9e+02 Score=22.98 Aligned_cols=34 Identities=6% Similarity=0.029 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEec
Q 043290 5 ELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSM 41 (430)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~ 41 (430)
||+++..+..+-+. +|.+++.+.+....|.++.+
T Consensus 3 ki~vl~sg~gs~~~---~ll~~~~~~~~~~~I~~vvs 36 (200)
T PRK05647 3 RIVVLASGNGSNLQ---AIIDACAAGQLPAEIVAVIS 36 (200)
T ss_pred eEEEEEcCCChhHH---HHHHHHHcCCCCcEEEEEEe
Confidence 49999988755555 45556666643333665543
No 293
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=28.05 E-value=1.1e+02 Score=31.50 Aligned_cols=27 Identities=19% Similarity=0.236 Sum_probs=22.3
Q ss_pred eeEEEeccCch------hHHHHHHhCCceeecc
Q 043290 357 IGGFVSHCGWN------SILESLWYGVPIATWP 383 (430)
Q Consensus 357 ~~~~itHgG~~------s~~eal~~GvP~v~~P 383 (430)
.+++++|.|-| ++.+|.+.++|||++.
T Consensus 64 ~gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~ 96 (586)
T PRK06276 64 VGVCVATSGPGATNLVTGIATAYADSSPVIALT 96 (586)
T ss_pred CEEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 34589998854 8899999999999984
No 294
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=28.00 E-value=5.7e+02 Score=25.22 Aligned_cols=25 Identities=16% Similarity=0.015 Sum_probs=19.6
Q ss_pred CceEEEEcCCcchHHHHHHhcCCceEEE
Q 043290 112 QVTGLVLDFFCVSMVDIAKELSLPSYIF 139 (430)
Q Consensus 112 ~~D~vV~D~~~~~~~~~A~~lgiP~v~~ 139 (430)
+||++|... ....+|+++|||++.+
T Consensus 395 ~pDl~ig~~---~~~~~a~k~giP~i~~ 419 (456)
T TIGR01283 395 KADLLIAGG---KERYTALKLGIPFCDI 419 (456)
T ss_pred CCCEEEEcc---chHHHHHhcCCCEEEc
Confidence 799999763 4467788999997764
No 295
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=27.85 E-value=95 Score=29.92 Aligned_cols=76 Identities=13% Similarity=0.167 Sum_probs=47.3
Q ss_pred hHHHHHhhcCCCCcEEEE--eecCCccCCHHHHHHHHHHHHhCCCcEEEEEecCCCCCccccccccCCCCCCChhHHHhh
Q 043290 259 QKIFQWLDDLAESSVVFL--CFGSSGSFDVAQVKEIAIGLERSGYNFLWSLRVSCPKDEASAHRYVTNNGVFPEGFLERI 336 (430)
Q Consensus 259 ~~l~~~l~~~~~~~vVyv--sfGS~~~~~~~~~~~~~~al~~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (430)
.++..|=.+. |.-|. ++|+..- +...++++-+.-.+.+.+++.++|-+.
T Consensus 450 ~qin~wK~~f---P~sf~~~tpGe~ik-PQ~vIk~Ldk~t~d~~~kviitTGVGq------------------------- 500 (675)
T KOG4166|consen 450 NQINVWKQKF---PLSFKEETPGEAIK-PQYVIKVLDKLTDDTGRKVIITTGVGQ------------------------- 500 (675)
T ss_pred HHHHHHHHhC---CeeeeccCCccccC-hHHHHHHHHHhccCcCceEEEeccccH-------------------------
Confidence 4455554443 35666 6776332 223333344434457888888876541
Q ss_pred cCceEEEeccchhhhhccCceeEEEeccCchhHH
Q 043290 337 KGRGMICGWVPQVEILAHKAIGGFVSHCGWNSIL 370 (430)
Q Consensus 337 ~~~~~v~~~~pq~~iL~~~~~~~~itHgG~~s~~ 370 (430)
---|+-|.+-...|+. ++|.||.|++-
T Consensus 501 -----HQMWAAqfy~w~kP~~--~~tSGGLGtMG 527 (675)
T KOG4166|consen 501 -----HQMWAAQFYNWKKPRQ--WLTSGGLGTMG 527 (675)
T ss_pred -----HHHHHHHHhcccCccc--eeecCCccccc
Confidence 0137788888888988 99999999754
No 296
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.65 E-value=62 Score=29.31 Aligned_cols=28 Identities=18% Similarity=0.138 Sum_probs=23.1
Q ss_pred CceeEEEeccCchhHHHHHH------hCCceeeccc
Q 043290 355 KAIGGFVSHCGWNSILESLW------YGVPIATWPI 384 (430)
Q Consensus 355 ~~~~~~itHgG~~s~~eal~------~GvP~v~~P~ 384 (430)
+++ +|+-||-||++.|+. .++|++++-.
T Consensus 36 ~Dl--vi~iGGDGT~L~a~~~~~~~~~~iPilGIN~ 69 (265)
T PRK04885 36 PDI--VISVGGDGTLLSAFHRYENQLDKVRFVGVHT 69 (265)
T ss_pred CCE--EEEECCcHHHHHHHHHhcccCCCCeEEEEeC
Confidence 455 999999999999986 4889888653
No 297
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=27.37 E-value=67 Score=28.69 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=22.1
Q ss_pred CceeEEEeccCchhHHHHHHh----CCceeecc
Q 043290 355 KAIGGFVSHCGWNSILESLWY----GVPIATWP 383 (430)
Q Consensus 355 ~~~~~~itHgG~~s~~eal~~----GvP~v~~P 383 (430)
+++ +|+-||-||++.|+.. ++|++++-
T Consensus 26 ~Dl--vi~iGGDGTlL~a~~~~~~~~~PvlGIN 56 (246)
T PRK04761 26 ADV--IVALGGDGFMLQTLHRYMNSGKPVYGMN 56 (246)
T ss_pred CCE--EEEECCCHHHHHHHHHhcCCCCeEEEEe
Confidence 455 9999999999988765 68988765
No 298
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=27.30 E-value=5e+02 Score=26.57 Aligned_cols=28 Identities=14% Similarity=0.324 Sum_probs=22.9
Q ss_pred ceeEEEeccCch------hHHHHHHhCCceeecc
Q 043290 356 AIGGFVSHCGWN------SILESLWYGVPIATWP 383 (430)
Q Consensus 356 ~~~~~itHgG~~------s~~eal~~GvP~v~~P 383 (430)
+.+++++|.|-| ++++|...++|||++.
T Consensus 64 ~~gv~~~t~GPG~~N~~~gla~A~~~~~Pvl~I~ 97 (579)
T TIGR03457 64 RMSMVIGQNGPGVTNCVTAIAAAYWAHTPVVIVT 97 (579)
T ss_pred CCEEEEECCCchHHHHHHHHHHHhhcCCCEEEEe
Confidence 344589998866 6779999999999985
No 299
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=27.29 E-value=1.8e+02 Score=23.94 Aligned_cols=25 Identities=16% Similarity=0.361 Sum_probs=19.6
Q ss_pred EEEeccCch----hHHHHH-HhCCceeecc
Q 043290 359 GFVSHCGWN----SILESL-WYGVPIATWP 383 (430)
Q Consensus 359 ~~itHgG~~----s~~eal-~~GvP~v~~P 383 (430)
++..+.|.+ ++++|. .+++|||++=
T Consensus 62 v~~~~sG~gn~~~~l~~a~~~~~~Pvl~i~ 91 (157)
T TIGR03845 62 ILMQSSGLGNSINALASLNKTYGIPLPILA 91 (157)
T ss_pred EEEeCCcHHHHHHHHHHHHHcCCCCEEEEE
Confidence 578888865 566777 9999999976
No 300
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=27.25 E-value=3.9e+02 Score=25.25 Aligned_cols=62 Identities=16% Similarity=0.140 Sum_probs=41.4
Q ss_pred eccchhhhhccCceeEEEe------ccCchhHHHHHHhCCceee-cccccccchhHHHHhhhhceeEEe
Q 043290 344 GWVPQVEILAHKAIGGFVS------HCGWNSILESLWYGVPIAT-WPIYAEQQLNAFRMVKEQGLALDL 405 (430)
Q Consensus 344 ~~~pq~~iL~~~~~~~~it------HgG~~s~~eal~~GvP~v~-~P~~~DQ~~~a~rv~~~~G~G~~~ 405 (430)
.|-..+++|..+++.++.+ +-+.--+.+||.+|+.++| =|+..++-.-..++++..|+=+.+
T Consensus 52 ~y~~~eell~d~Di~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~v 120 (343)
T TIGR01761 52 LYCEVEELPDDIDIACVVVRSAIVGGQGSALARALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYLV 120 (343)
T ss_pred ccCCHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 5678889998888877764 2345678889999999998 677654444444444433444433
No 301
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=27.23 E-value=77 Score=29.16 Aligned_cols=28 Identities=21% Similarity=0.171 Sum_probs=22.8
Q ss_pred cCceeEEEeccCchhHHHHHHh----CCceeecc
Q 043290 354 HKAIGGFVSHCGWNSILESLWY----GVPIATWP 383 (430)
Q Consensus 354 ~~~~~~~itHgG~~s~~eal~~----GvP~v~~P 383 (430)
.+++ +|+-||-||+++++.. ++|++++-
T Consensus 63 ~~d~--vi~~GGDGt~l~~~~~~~~~~~pilGIn 94 (291)
T PRK02155 63 RADL--AVVLGGDGTMLGIGRQLAPYGVPLIGIN 94 (291)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEc
Confidence 4566 9999999999999874 67888755
No 302
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=27.22 E-value=3.7e+02 Score=22.49 Aligned_cols=20 Identities=10% Similarity=0.013 Sum_probs=13.6
Q ss_pred HHHHHHHhCCCcEEEEEecC
Q 043290 291 EIAIGLERSGYNFLWSLRVS 310 (430)
Q Consensus 291 ~~~~al~~~~~~~vw~~~~~ 310 (430)
.+-.+++..+.++|..+|.+
T Consensus 59 aiGa~la~~~~~vv~i~GDG 78 (186)
T cd02015 59 AIGAKVARPDKTVICIDGDG 78 (186)
T ss_pred HHHHHHhCCCCeEEEEEccc
Confidence 35556666777887777765
No 303
>PRK07773 replicative DNA helicase; Validated
Probab=27.17 E-value=4.2e+02 Score=28.92 Aligned_cols=37 Identities=24% Similarity=0.484 Sum_probs=30.0
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhC-CCCeEEEEEecCCC
Q 043290 6 LIFVPSPGIGHLVSTLEFAKHLTDR-DDRISVTLLSMKLA 44 (430)
Q Consensus 6 i~~~~~p~~GH~~P~l~La~~L~~r-GH~v~Vt~~~~~~~ 44 (430)
+++..-|+.|--.-.+.+|...+.+ |.. |.+++-+..
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~~~~--V~~fSlEms 257 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRHRLA--VAIFSLEMS 257 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcCCe--EEEEecCCC
Confidence 6777888999999999999998865 645 889987743
No 304
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=27.17 E-value=2.9e+02 Score=26.89 Aligned_cols=25 Identities=12% Similarity=0.113 Sum_probs=19.9
Q ss_pred CceEEEEcCCcchHHHHHHhcCCceEEE
Q 043290 112 QVTGLVLDFFCVSMVDIAKELSLPSYIF 139 (430)
Q Consensus 112 ~~D~vV~D~~~~~~~~~A~~lgiP~v~~ 139 (430)
+||++|.... ...+|+++|||++..
T Consensus 358 ~pdliig~s~---~~~~a~~lgip~~~~ 382 (415)
T cd01977 358 KPDIILTGPR---VGELVKKLHVPYVNI 382 (415)
T ss_pred CCCEEEecCc---cchhhhhcCCCEEec
Confidence 7999997764 336899999998765
No 305
>PRK08862 short chain dehydrogenase; Provisional
Probab=27.03 E-value=3.6e+02 Score=23.40 Aligned_cols=31 Identities=19% Similarity=0.295 Sum_probs=22.0
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEe
Q 043290 5 ELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLS 40 (430)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~ 40 (430)
+.++++-++. .+ -.++|++|+++|++ |.++.
T Consensus 6 k~~lVtGas~-GI--G~aia~~la~~G~~--V~~~~ 36 (227)
T PRK08862 6 SIILITSAGS-VL--GRTISCHFARLGAT--LILCD 36 (227)
T ss_pred eEEEEECCcc-HH--HHHHHHHHHHCCCE--EEEEc
Confidence 4666665555 33 56799999999988 66654
No 306
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=27.01 E-value=5.6e+02 Score=25.05 Aligned_cols=38 Identities=11% Similarity=0.309 Sum_probs=32.7
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecCC
Q 043290 4 AELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMKL 43 (430)
Q Consensus 4 ~~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~ 43 (430)
..|+|+-..+.|-..-...||..|..+|.. |.+++...
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~Gkk--VglI~aDt 279 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKT--VGFITTDH 279 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCc--EEEEecCC
Confidence 367888888999999999999999999977 88888653
No 307
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=26.93 E-value=1e+02 Score=31.45 Aligned_cols=27 Identities=11% Similarity=0.230 Sum_probs=22.4
Q ss_pred eeEEEeccCch------hHHHHHHhCCceeecc
Q 043290 357 IGGFVSHCGWN------SILESLWYGVPIATWP 383 (430)
Q Consensus 357 ~~~~itHgG~~------s~~eal~~GvP~v~~P 383 (430)
.+++++|.|-| ++++|...++|||++.
T Consensus 67 ~gv~~~t~GpG~~n~~~gla~A~~~~~Pvl~i~ 99 (563)
T PRK08527 67 VGVAIVTSGPGFTNAVTGLATAYMDSIPLVLIS 99 (563)
T ss_pred CEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 44489998855 8899999999999984
No 308
>PRK07206 hypothetical protein; Provisional
Probab=26.67 E-value=2e+02 Score=27.82 Aligned_cols=31 Identities=10% Similarity=0.038 Sum_probs=21.5
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecC
Q 043290 5 ELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMK 42 (430)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (430)
+|+++-.... ...+++++.++|++ +..++..
T Consensus 4 ~~liv~~~~~-----~~~~~~a~~~~G~~--~v~v~~~ 34 (416)
T PRK07206 4 KVVIVDPFSS-----GKFLAPAFKKRGIE--PIAVTSS 34 (416)
T ss_pred eEEEEcCCch-----HHHHHHHHHHcCCe--EEEEEcC
Confidence 4777775433 34688999999977 6666643
No 309
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=26.65 E-value=3.2e+02 Score=25.80 Aligned_cols=34 Identities=15% Similarity=0.221 Sum_probs=24.6
Q ss_pred CCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEec
Q 043290 2 KKAELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSM 41 (430)
Q Consensus 2 ~~~~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~ 41 (430)
++.||+++=.++-| -.+|+.|++.|+. .++++-.
T Consensus 23 ~~~~VlIiG~GglG-----s~va~~La~aGvg-~i~lvD~ 56 (338)
T PRK12475 23 REKHVLIVGAGALG-----AANAEALVRAGIG-KLTIADR 56 (338)
T ss_pred cCCcEEEECCCHHH-----HHHHHHHHHcCCC-EEEEEcC
Confidence 45678888777766 6789999999963 2666554
No 310
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=26.56 E-value=91 Score=31.98 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=22.8
Q ss_pred eeEEEeccCch------hHHHHHHhCCceeecc
Q 043290 357 IGGFVSHCGWN------SILESLWYGVPIATWP 383 (430)
Q Consensus 357 ~~~~itHgG~~------s~~eal~~GvP~v~~P 383 (430)
.+++++|.|-| ++++|...++|||++.
T Consensus 77 ~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~ 109 (585)
T CHL00099 77 VGVCFATSGPGATNLVTGIATAQMDSVPLLVIT 109 (585)
T ss_pred cEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 44588998865 8899999999999985
No 311
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=26.52 E-value=1.2e+02 Score=27.88 Aligned_cols=38 Identities=13% Similarity=0.099 Sum_probs=29.5
Q ss_pred CCCcEEEEEcCCCCCC----HHHHHHHHHHHHhCCCCeEEEEEe
Q 043290 1 MKKAELIFVPSPGIGH----LVSTLEFAKHLTDRDDRISVTLLS 40 (430)
Q Consensus 1 m~~~~i~~~~~p~~GH----~~P~l~La~~L~~rGH~v~Vt~~~ 40 (430)
|+|+||+++.-+...- +.-.-+++++|.+.||+ |.++.
T Consensus 1 ~~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~--~~~~~ 42 (296)
T PRK14569 1 MKNEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYD--AVGVD 42 (296)
T ss_pred CCCcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCE--EEEEc
Confidence 8889999988764432 46677899999999999 66664
No 312
>PLN02590 probable tyrosine decarboxylase
Probab=26.47 E-value=1.8e+02 Score=29.51 Aligned_cols=70 Identities=16% Similarity=0.071 Sum_probs=43.1
Q ss_pred eeEEEeccCchhHHHHHHh------------CCceeecccccccch-hHHHHhhhhceeE----EeecccccCCcccCHh
Q 043290 357 IGGFVSHCGWNSILESLWY------------GVPIATWPIYAEQQL-NAFRMVKEQGLAL----DLRLDYRVGSDLVMAC 419 (430)
Q Consensus 357 ~~~~itHgG~~s~~eal~~------------GvP~v~~P~~~DQ~~-~a~rv~~~~G~G~----~~~~~~~~~~~~~~~~ 419 (430)
.+++++.||.-+.+-||.+ |.|-+++- ..||-. --.+.+..+|+|. .++.+. .....++.+
T Consensus 195 ~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy-~S~~aH~Sv~KAa~ilGlg~~~vr~Vp~d~-~~~~~md~~ 272 (539)
T PLN02590 195 GGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVY-GSDQTHSSFRKACLIGGIHEENIRLLKTDS-STNYGMPPE 272 (539)
T ss_pred CceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEE-ecCCchHHHHHHHHHcCCCcccEEEEeCCC-CCCCcCCHH
Confidence 4578999999888777755 34543333 245532 2335566679982 233321 012479999
Q ss_pred HHHHHHHHh
Q 043290 420 DIESAVRCL 428 (430)
Q Consensus 420 ~l~~ai~~v 428 (430)
.|+++|++-
T Consensus 273 ~L~~~I~~d 281 (539)
T PLN02590 273 SLEEAISHD 281 (539)
T ss_pred HHHHHHHHH
Confidence 999999763
No 313
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=26.32 E-value=4e+02 Score=25.28 Aligned_cols=48 Identities=10% Similarity=-0.054 Sum_probs=35.8
Q ss_pred HHHHHhhcCCCCcEEEEeecCCccCCHHHHHHHHHHHHhCCCcEEEEEecC
Q 043290 260 KIFQWLDDLAESSVVFLCFGSSGSFDVAQVKEIAIGLERSGYNFLWSLRVS 310 (430)
Q Consensus 260 ~l~~~l~~~~~~~vVyvsfGS~~~~~~~~~~~~~~al~~~~~~~vw~~~~~ 310 (430)
....|+..+ +.+.-|-+......++....+++.|++.+...+..+|++
T Consensus 57 ~v~~~~~~G---GT~lgssR~~~~~~~e~~~~~~~~l~~~gId~LvvIGGD 104 (347)
T COG0205 57 DVDDLINRG---GTFLGSARFPEFKTEEGRKVAAENLKKLGIDALVVIGGD 104 (347)
T ss_pred chhHHHhcC---CeEEeeCCCCCcccHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 335566654 467766666666677778889999999999988888876
No 314
>TIGR01196 edd 6-phosphogluconate dehydratase. A close homolog, designated MocB (mannityl opine catabolism), is found in a mannopine catabolism region of a plasmid of Agrobacterium tumefaciens. However, it is not essential for mannopine catabolism, branches within the cluster of 6-phosphogluconate dehydratases (with a short branch length) in a tree rooted by the presence of other dehydyatases. It may represent an authentic 6-phosphogluconate dehydratase, redundant with the chromosomal copy shown to exist in plasmid-cured strains. This model includes mocB above the trusted cutoff, although the designation is somewhat tenuous.
Probab=26.31 E-value=7.3e+02 Score=25.52 Aligned_cols=33 Identities=15% Similarity=0.131 Sum_probs=25.6
Q ss_pred CCceEEE----EcCCcchHHHHHHhc-CCceEEEecch
Q 043290 111 LQVTGLV----LDFFCVSMVDIAKEL-SLPSYIFLTSN 143 (430)
Q Consensus 111 ~~~D~vV----~D~~~~~~~~~A~~l-giP~v~~~~~~ 143 (430)
+.+|.+| ||-..+..+..|-++ ++|.+.+...+
T Consensus 142 ~~fDg~v~l~~CDKivPG~lMaA~r~g~lP~IfV~gGp 179 (601)
T TIGR01196 142 NMFDGALFLGVCDKIVPGLLIGALSFGHLPAVFVPSGP 179 (601)
T ss_pred CCcceeEEeccCCCCcHHHHHHHHhcCCCCEEEEeCCC
Confidence 4788766 788888888888899 89977776443
No 315
>PLN02263 serine decarboxylase
Probab=26.25 E-value=96 Score=30.71 Aligned_cols=82 Identities=12% Similarity=0.212 Sum_probs=51.4
Q ss_pred EEEeccchhhhhccCceeEEEeccCchhHHHHHHhCC-----ceeecccccccch-hHHHHhhhhceeEEeecccccCCc
Q 043290 341 MICGWVPQVEILAHKAIGGFVSHCGWNSILESLWYGV-----PIATWPIYAEQQL-NAFRMVKEQGLALDLRLDYRVGSD 414 (430)
Q Consensus 341 ~v~~~~pq~~iL~~~~~~~~itHgG~~s~~eal~~Gv-----P~v~~P~~~DQ~~-~a~rv~~~~G~G~~~~~~~~~~~~ 414 (430)
.|++|+-+..=++.....++||.||.-+.+.|++.+. +++.+ .||-. --.+.++.+|+.+..-. .++.+
T Consensus 137 ~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~~~~vvy~---S~~aH~Sv~KAa~llgi~~~~Vp--~d~~g 211 (470)
T PLN02263 137 GVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVFPDGILYA---SRESHYSVFKAARMYRMECVKVD--TLVSG 211 (470)
T ss_pred HHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhcCCcEEEE---cCCccHHHHHHHHhcCCcceEec--cCCCC
Confidence 3567766555444334456999999999999887753 33433 34433 22344556788743321 12456
Q ss_pred ccCHhHHHHHHHH
Q 043290 415 LVMACDIESAVRC 427 (430)
Q Consensus 415 ~~~~~~l~~ai~~ 427 (430)
.++.+.|+++|++
T Consensus 212 ~mD~~aL~~aI~~ 224 (470)
T PLN02263 212 EIDCADFKAKLLA 224 (470)
T ss_pred cCcHHHHHHHHHh
Confidence 8999999999964
No 316
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=26.05 E-value=4.6e+02 Score=23.18 Aligned_cols=39 Identities=26% Similarity=0.447 Sum_probs=30.9
Q ss_pred EEEEcC-CCCCCHHHHHHHHHHHHhCCCCeEEEEEecCCCCC
Q 043290 6 LIFVPS-PGIGHLVSTLEFAKHLTDRDDRISVTLLSMKLAVA 46 (430)
Q Consensus 6 i~~~~~-p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~ 46 (430)
|.|++. ++.|--.-.+.||.+|+++|-. |+++=..++..
T Consensus 4 Itf~s~KGGaGKTT~~~~LAs~la~~G~~--V~lIDaDpn~p 43 (231)
T PF07015_consen 4 ITFASSKGGAGKTTAAMALASELAARGAR--VALIDADPNQP 43 (231)
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHHCCCe--EEEEeCCCCCc
Confidence 455544 4779999999999999999966 98998765543
No 317
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=25.92 E-value=1.5e+02 Score=28.44 Aligned_cols=68 Identities=16% Similarity=0.073 Sum_probs=44.1
Q ss_pred eeEEEeccCchhHHHHHHhC-----------------CceeecccccccchhHHHHhhhhceeEEeecccccCCcccCHh
Q 043290 357 IGGFVSHCGWNSILESLWYG-----------------VPIATWPIYAEQQLNAFRMVKEQGLALDLRLDYRVGSDLVMAC 419 (430)
Q Consensus 357 ~~~~itHgG~~s~~eal~~G-----------------vP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~~~~~~~~~~~~~ 419 (430)
..+++|.||..+.+-|+.+. .|+|.++-.. +..+. +.+..+|+|+..-. .++++.++.+
T Consensus 104 ~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~a-H~S~~-Kaa~~lGlg~~~I~--~~~~~~md~~ 179 (373)
T PF00282_consen 104 AGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQA-HYSIE-KAARILGLGVRKIP--TDEDGRMDIE 179 (373)
T ss_dssp SEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS--THHH-HHHHHTTSEEEEE---BBTTSSB-HH
T ss_pred CceeEeccchHHHHHHHHHHHHHHhhhhhhccccccccccccccccc-ccHHH-HhcceeeeEEEEec--CCcchhhhHH
Confidence 45799999999888776432 4566665433 45554 45666799943221 2245689999
Q ss_pred HHHHHHHHh
Q 043290 420 DIESAVRCL 428 (430)
Q Consensus 420 ~l~~ai~~v 428 (430)
+|+++|++.
T Consensus 180 ~L~~~l~~~ 188 (373)
T PF00282_consen 180 ALEKALEKD 188 (373)
T ss_dssp HHHHHHHHH
T ss_pred Hhhhhhccc
Confidence 999998764
No 318
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=25.88 E-value=5.2e+02 Score=25.34 Aligned_cols=60 Identities=15% Similarity=0.197 Sum_probs=40.2
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecCCCCChhhHHhhhhccCCCCCeEEEeC
Q 043290 5 ELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMKLAVAPWVDAYAKSLTDSQPRICIIDL 68 (430)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 68 (430)
-|+++=.=+.|-..-.-.||+.|..+|+. |-+++.....+.++.+.... +..-++.|+..
T Consensus 102 vImmvGLQGsGKTTt~~KLA~~lkk~~~k--vllVaaD~~RpAA~eQL~~L--a~q~~v~~f~~ 161 (451)
T COG0541 102 VILMVGLQGSGKTTTAGKLAKYLKKKGKK--VLLVAADTYRPAAIEQLKQL--AEQVGVPFFGS 161 (451)
T ss_pred EEEEEeccCCChHhHHHHHHHHHHHcCCc--eEEEecccCChHHHHHHHHH--HHHcCCceecC
Confidence 46666666788999999999999999988 87888765554433332211 22334666654
No 319
>COG4029 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.78 E-value=1.9e+02 Score=22.49 Aligned_cols=50 Identities=20% Similarity=0.281 Sum_probs=38.2
Q ss_pred hcHhHHHHHhhcCCCCcEEE--EeecCCccCCHHHHHHHHHHHHhCCCcEEEE
Q 043290 256 AQYQKIFQWLDDLAESSVVF--LCFGSSGSFDVAQVKEIAIGLERSGYNFLWS 306 (430)
Q Consensus 256 ~~~~~l~~~l~~~~~~~vVy--vsfGS~~~~~~~~~~~~~~al~~~~~~~vw~ 306 (430)
..+.++.+||.... .||.. -+||.+...+.+.+.++++-.++.+-+-|++
T Consensus 17 vsp~elv~~l~~~~-~PvtiKeTCfGaii~G~Ed~v~klveriR~~d~~~IF~ 68 (142)
T COG4029 17 VSPKELVQKLLELS-PPVTIKETCFGAIIDGPEDEVRKLVERIRELDGNAIFS 68 (142)
T ss_pred cChHHHHHHHHhcC-CCeEeeeeeeeeeecCcHHHHHHHHHHHHHhccCceee
Confidence 45788999998753 23322 3799999999999999999999877766665
No 320
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=25.77 E-value=3.4e+02 Score=27.87 Aligned_cols=32 Identities=22% Similarity=0.210 Sum_probs=23.1
Q ss_pred EEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEec
Q 043290 7 IFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSM 41 (430)
Q Consensus 7 ~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~ 41 (430)
+++...+.|-.|-+-.++.+..++ +.|.+++.
T Consensus 66 v~~~t~GPG~~n~l~~i~~A~~~~---~Pvl~I~G 97 (586)
T PRK06276 66 VCVATSGPGATNLVTGIATAYADS---SPVIALTG 97 (586)
T ss_pred EEEECCCccHHHHHHHHHHHHhcC---CCEEEEeC
Confidence 445566778888888888888877 55666664
No 321
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=25.72 E-value=4e+02 Score=22.34 Aligned_cols=39 Identities=10% Similarity=0.234 Sum_probs=31.4
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCCeE-EEEEecC
Q 043290 4 AELIFVPSPGIGHLVSTLEFAKHLTDRDDRIS-VTLLSMK 42 (430)
Q Consensus 4 ~~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~-Vt~~~~~ 42 (430)
.-|.+++-.+.|-..-.+.+|-+.+.+|++|. |.|+...
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~ 45 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGA 45 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCC
Confidence 45888999999999999999999999998843 2455544
No 322
>PRK10239 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase; Provisional
Probab=25.66 E-value=1.2e+02 Score=25.13 Aligned_cols=31 Identities=19% Similarity=0.223 Sum_probs=22.3
Q ss_pred EEEEeecCCccCCHHHHHHHHHHHHhC-CCcE
Q 043290 273 VVFLCFGSSGSFDVAQVKEIAIGLERS-GYNF 303 (430)
Q Consensus 273 vVyvsfGS~~~~~~~~~~~~~~al~~~-~~~~ 303 (430)
.||+++||......+.++..++.|++. +.++
T Consensus 3 ~v~i~lGSN~g~~~~~l~~A~~~L~~~~~~~i 34 (159)
T PRK10239 3 VAYIAIGSNLASPLEQVNAALKALGDIPESRI 34 (159)
T ss_pred EEEEEEeCchhhHHHHHHHHHHHHhcCCCCeE
Confidence 699999998765666677777777664 4443
No 323
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=25.23 E-value=1.3e+02 Score=30.65 Aligned_cols=27 Identities=15% Similarity=0.364 Sum_probs=22.0
Q ss_pred eeEEEeccCch------hHHHHHHhCCceeecc
Q 043290 357 IGGFVSHCGWN------SILESLWYGVPIATWP 383 (430)
Q Consensus 357 ~~~~itHgG~~------s~~eal~~GvP~v~~P 383 (430)
.+++++|.|-| ++.+|...++|||++.
T Consensus 69 ~gv~~~t~GpG~~N~l~gi~~A~~~~~Pvl~i~ 101 (572)
T PRK06456 69 PGVCTATSGPGTTNLVTGLITAYWDSSPVIAIT 101 (572)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHhhCCCEEEEe
Confidence 34488888854 7899999999999985
No 324
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=25.12 E-value=4.4e+02 Score=22.57 Aligned_cols=103 Identities=12% Similarity=-0.003 Sum_probs=56.7
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCCeE-EEEEecCC-CCChhhHHhhhhccCCCCCeEEEeCCCCCCCCCCCCCC
Q 043290 4 AELIFVPSPGIGHLVSTLEFAKHLTDRDDRIS-VTLLSMKL-AVAPWVDAYAKSLTDSQPRICIIDLPPVDPPLPDVLKK 81 (430)
Q Consensus 4 ~~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~-Vt~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 81 (430)
.=|.+++-.+.|-....+.+|-+-.-+|-+|- |.|+-... +-+. ...+. .+.+++|+.++.....+..
T Consensus 29 Gli~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiKg~~~~GE~---~~~~~---~~~~v~~~~~~~g~tw~~~---- 98 (198)
T COG2109 29 GLIIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFIKGGWKYGEE---AALEK---FGLGVEFHGMGEGFTWETQ---- 98 (198)
T ss_pred CeEEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEEeecCcchhHH---HHHHh---hccceeEEecCCceeCCCc----
Confidence 34788899999999888888755555554433 44555541 1111 11221 1456888888765432221
Q ss_pred CHHHHHHHHHHhhhhhHHHHHHHhhccCCCCceEEEEcCCcc
Q 043290 82 SPEYFLSLVVESHLPNVKNIVSSRANSGSLQVTGLVLDFFCV 123 (430)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~vV~D~~~~ 123 (430)
+...-. ..+....+.+.+.+. +.+.|+||.|-++.
T Consensus 99 ~~~~d~----~aa~~~w~~a~~~l~---~~~ydlviLDEl~~ 133 (198)
T COG2109 99 DREADI----AAAKAGWEHAKEALA---DGKYDLVILDELNY 133 (198)
T ss_pred CcHHHH----HHHHHHHHHHHHHHh---CCCCCEEEEehhhH
Confidence 111111 233334444444442 35899999998764
No 325
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=25.07 E-value=2.1e+02 Score=21.19 Aligned_cols=39 Identities=10% Similarity=0.197 Sum_probs=27.8
Q ss_pred CCCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEec
Q 043290 1 MKKAELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSM 41 (430)
Q Consensus 1 m~~~~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~ 41 (430)
|+++||++++..+.+--.-...+=+.+.++|.+ +.+...
T Consensus 1 ~~~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~--~~v~a~ 39 (95)
T TIGR00853 1 MNETNILLLCAAGMSTSLLVNKMNKAAEEYGVP--VKIAAG 39 (95)
T ss_pred CCccEEEEECCCchhHHHHHHHHHHHHHHCCCc--EEEEEe
Confidence 567789999988877555556666677888876 555554
No 326
>PRK05636 replicative DNA helicase; Provisional
Probab=24.94 E-value=3.1e+02 Score=27.61 Aligned_cols=37 Identities=19% Similarity=0.511 Sum_probs=29.4
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHh-CCCCeEEEEEecCCC
Q 043290 6 LIFVPSPGIGHLVSTLEFAKHLTD-RDDRISVTLLSMKLA 44 (430)
Q Consensus 6 i~~~~~p~~GH~~P~l~La~~L~~-rGH~v~Vt~~~~~~~ 44 (430)
|++..-|+.|--.-.+.+|...+. .|.. |.+++.+..
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~~g~~--v~~fSlEMs 305 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIKHNKA--SVIFSLEMS 305 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCe--EEEEEeeCC
Confidence 577788899999999999988774 4755 888887743
No 327
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=24.93 E-value=1.2e+02 Score=25.42 Aligned_cols=30 Identities=17% Similarity=0.142 Sum_probs=19.8
Q ss_pred CCceEEEEcCCcch--HHHHHHhcCCceEEEe
Q 043290 111 LQVTGLVLDFFCVS--MVDIAKELSLPSYIFL 140 (430)
Q Consensus 111 ~~~D~vV~D~~~~~--~~~~A~~lgiP~v~~~ 140 (430)
-+||+||....... ....-++.|||++.+.
T Consensus 68 l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 68 LKPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred cCCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 48999998653322 3344567899977664
No 328
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=24.93 E-value=5.6e+02 Score=25.03 Aligned_cols=34 Identities=29% Similarity=0.461 Sum_probs=29.1
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecC
Q 043290 6 LIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMK 42 (430)
Q Consensus 6 i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (430)
|++-=-|+-|.-.=+++++..|+++| . |-+++.+
T Consensus 96 iLIgGdPGIGKSTLLLQva~~lA~~~-~--vLYVsGE 129 (456)
T COG1066 96 ILIGGDPGIGKSTLLLQVAARLAKRG-K--VLYVSGE 129 (456)
T ss_pred EEEccCCCCCHHHHHHHHHHHHHhcC-c--EEEEeCC
Confidence 45555688899999999999999999 7 8889887
No 329
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=24.74 E-value=98 Score=31.79 Aligned_cols=27 Identities=15% Similarity=0.399 Sum_probs=22.5
Q ss_pred eeEEEeccCch------hHHHHHHhCCceeecc
Q 043290 357 IGGFVSHCGWN------SILESLWYGVPIATWP 383 (430)
Q Consensus 357 ~~~~itHgG~~------s~~eal~~GvP~v~~P 383 (430)
.+++++|.|-| ++.+|...++|||++.
T Consensus 69 ~gv~~~t~GPG~~n~~~gi~~A~~~~~Pvl~I~ 101 (588)
T PRK07525 69 MGMVIGQNGPGITNFVTAVATAYWAHTPVVLVT 101 (588)
T ss_pred CEEEEEcCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 44599998855 7889999999999985
No 330
>KOG3446 consensus NADH:ubiquinone oxidoreductase NDUFA2/B8 subunit [Energy production and conversion]
Probab=24.63 E-value=1.3e+02 Score=21.69 Aligned_cols=45 Identities=22% Similarity=0.119 Sum_probs=29.4
Q ss_pred CceeecccccccchhHHHHhhhhceeEEeecccccCCcccCHhHHHHHHHHhh
Q 043290 377 VPIATWPIYAEQQLNAFRMVKEQGLALDLRLDYRVGSDLVMACDIESAVRCLM 429 (430)
Q Consensus 377 vP~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~~~~~~~~~~~~~~l~~ai~~vl 429 (430)
.|+++.=..+=||-.=+|-. .|+-+.+..+ .+++++|.++++.+.
T Consensus 50 lPILIREcSgVqPrl~ARY~--~G~E~~v~L~------~~s~~~i~kale~l~ 94 (97)
T KOG3446|consen 50 LPILIRECSGVQPRLWARYG--NGVERSVSLA------NLSAPQIHKALENLG 94 (97)
T ss_pred CcEeehhhcCCchHHHHHhc--CCceEEeehh------hcchHHHHHHHHHHh
Confidence 45666555566665444422 2555555555 899999999999875
No 331
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=24.58 E-value=1.1e+02 Score=25.51 Aligned_cols=44 Identities=14% Similarity=0.198 Sum_probs=28.2
Q ss_pred hhHHHHHHHhhccCCCCceEEEEcCCcchHHHHHHhcCCceEEEecchhH
Q 043290 96 PNVKNIVSSRANSGSLQVTGLVLDFFCVSMVDIAKELSLPSYIFLTSNLG 145 (430)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~D~vV~D~~~~~~~~~A~~lgiP~v~~~~~~~~ 145 (430)
..++..++++.+ .+.|++|.+.. +..+|+++|+|++.+.++.-+
T Consensus 112 ~e~~~~i~~~~~---~G~~viVGg~~---~~~~A~~~gl~~v~i~sg~es 155 (176)
T PF06506_consen 112 EEIEAAIKQAKA---EGVDVIVGGGV---VCRLARKLGLPGVLIESGEES 155 (176)
T ss_dssp HHHHHHHHHHHH---TT--EEEESHH---HHHHHHHTTSEEEESS--HHH
T ss_pred HHHHHHHHHHHH---cCCcEEECCHH---HHHHHHHcCCcEEEEEecHHH
Confidence 345555666544 47999998863 468899999998877665443
No 332
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=24.52 E-value=1.7e+02 Score=25.50 Aligned_cols=38 Identities=16% Similarity=0.147 Sum_probs=33.9
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecC
Q 043290 3 KAELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMK 42 (430)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (430)
+.+|++.+.++-.|-.-..-++..|..+|.+ |+.+...
T Consensus 88 ~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~--Vi~LG~~ 125 (213)
T cd02069 88 KGKIVLATVKGDVHDIGKNLVGVILSNNGYE--VIDLGVM 125 (213)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCCE--EEECCCC
Confidence 4689999999999999999999999999977 8777754
No 333
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=24.46 E-value=3.2e+02 Score=20.78 Aligned_cols=30 Identities=20% Similarity=0.332 Sum_probs=22.1
Q ss_pred EEEEeecCCccCCHHHHHHHHHHHHhCCCcEEE
Q 043290 273 VVFLCFGSSGSFDVAQVKEIAIGLERSGYNFLW 305 (430)
Q Consensus 273 vVyvsfGS~~~~~~~~~~~~~~al~~~~~~~vw 305 (430)
-|++|.+.. +.+.+.++++.|...|++++-
T Consensus 2 ~vlisv~~~---dk~~~~~~a~~l~~~G~~i~a 31 (116)
T cd01423 2 GILISIGSY---SKPELLPTAQKLSKLGYKLYA 31 (116)
T ss_pred cEEEecCcc---cchhHHHHHHHHHHCCCEEEE
Confidence 366766642 566788899999999999753
No 334
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=24.45 E-value=1.4e+02 Score=30.48 Aligned_cols=27 Identities=15% Similarity=0.334 Sum_probs=22.4
Q ss_pred eeEEEeccCch------hHHHHHHhCCceeecc
Q 043290 357 IGGFVSHCGWN------SILESLWYGVPIATWP 383 (430)
Q Consensus 357 ~~~~itHgG~~------s~~eal~~GvP~v~~P 383 (430)
.+++++|.|-| ++++|...++|+|++-
T Consensus 65 ~gv~~~t~GpG~~n~l~~i~~A~~~~~Pvl~i~ 97 (558)
T TIGR00118 65 VGVVLVTSGPGATNLVTGIATAYMDSIPMVVFT 97 (558)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 44588888855 8899999999999984
No 335
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=24.43 E-value=2.7e+02 Score=27.53 Aligned_cols=25 Identities=16% Similarity=0.212 Sum_probs=20.3
Q ss_pred CceEEEEcCCcchHHHHHHhcCCceEEE
Q 043290 112 QVTGLVLDFFCVSMVDIAKELSLPSYIF 139 (430)
Q Consensus 112 ~~D~vV~D~~~~~~~~~A~~lgiP~v~~ 139 (430)
+||++|... ....+|+++|||++..
T Consensus 395 ~pDllig~~---~~~~~a~k~gip~~~~ 419 (457)
T TIGR01284 395 KPDIILTGI---REGELAKKLGVPYINI 419 (457)
T ss_pred CCCEEEecC---CcchhhhhcCCCEEEc
Confidence 899999775 3466899999998765
No 336
>PF06204 CBM_X: Putative carbohydrate binding domain ; InterPro: IPR009342 This domain is conserved in enzymes that have carbohydrates as substrate, and may be a carbohydrate-binding domain.; PDB: 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A 3QG0_B 3AFJ_A 3ACS_A 1V7V_A 1V7X_A ....
Probab=24.33 E-value=40 Score=23.12 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=18.0
Q ss_pred eccchhhhhccCceeEEEeccCch
Q 043290 344 GWVPQVEILAHKAIGGFVSHCGWN 367 (430)
Q Consensus 344 ~~~pq~~iL~~~~~~~~itHgG~~ 367 (430)
.-+|+-.+|+...-.++||+.|.|
T Consensus 23 tp~P~~n~LsNg~y~~mvt~~G~G 46 (66)
T PF06204_consen 23 TPAPWVNVLSNGSYGVMVTNSGSG 46 (66)
T ss_dssp -SS--EEEE-SSSEEEEEETTSBE
T ss_pred CCCCEEEEeeCCcEEEEEcCCCce
Confidence 346888999999999999999986
No 337
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=24.17 E-value=3.2e+02 Score=26.08 Aligned_cols=25 Identities=16% Similarity=0.244 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEecC
Q 043290 286 VAQVKEIAIGLERSGYNFLWSLRVS 310 (430)
Q Consensus 286 ~~~~~~~~~al~~~~~~~vw~~~~~ 310 (430)
|.++..++++|.+.|+.+.......
T Consensus 10 p~~~~~la~~L~~~G~~v~~~~~~~ 34 (396)
T cd03818 10 PGQFRHLAPALAAQGHEVVFLTEPN 34 (396)
T ss_pred chhHHHHHHHHHHCCCEEEEEecCC
Confidence 4568889999999999887665544
No 338
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=24.11 E-value=3.9e+02 Score=24.38 Aligned_cols=37 Identities=11% Similarity=0.267 Sum_probs=25.3
Q ss_pred hhhccCceeEEEeccCchhHHHHHHhCCceeecccccccchh
Q 043290 350 EILAHKAIGGFVSHCGWNSILESLWYGVPIATWPIYAEQQLN 391 (430)
Q Consensus 350 ~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~DQ~~~ 391 (430)
.+++++++ +|+-= +-++.-|+.+|||.+++. .|....
T Consensus 246 ~~i~~~~~--vI~~R-lH~~I~A~~~gvP~i~i~--y~~K~~ 282 (298)
T TIGR03609 246 GLFASARL--VIGMR-LHALILAAAAGVPFVALS--YDPKVR 282 (298)
T ss_pred HHHhhCCE--EEEec-hHHHHHHHHcCCCEEEee--ccHHHH
Confidence 46778886 77642 335777888999999885 444433
No 339
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=24.09 E-value=6.8e+02 Score=24.41 Aligned_cols=38 Identities=18% Similarity=0.421 Sum_probs=30.9
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHh-CCCCeEEEEEecCCCC
Q 043290 6 LIFVPSPGIGHLVSTLEFAKHLTD-RDDRISVTLLSMKLAV 45 (430)
Q Consensus 6 i~~~~~p~~GH~~P~l~La~~L~~-rGH~v~Vt~~~~~~~~ 45 (430)
+++...|+.|--.-.+.++..++. .|+. |.+++.+...
T Consensus 198 ~vi~g~pg~GKT~~~l~~a~~~a~~~g~~--vl~~SlEm~~ 236 (434)
T TIGR00665 198 IILAARPSMGKTAFALNIAENAAIKEGKP--VAFFSLEMSA 236 (434)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCe--EEEEeCcCCH
Confidence 567778899999999999999875 5876 8899987543
No 340
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=23.86 E-value=82 Score=29.15 Aligned_cols=41 Identities=22% Similarity=0.225 Sum_probs=32.4
Q ss_pred hhccCceeEEEeccCchhHHHHHH----hCCceeecccccccchh
Q 043290 351 ILAHKAIGGFVSHCGWNSILESLW----YGVPIATWPIYAEQQLN 391 (430)
Q Consensus 351 iL~~~~~~~~itHgG~~s~~eal~----~GvP~v~~P~~~DQ~~~ 391 (430)
.|..-++..+|.=||-+|..-|.. +|+|+|++|-+-|-...
T Consensus 86 ~l~~~~Id~Li~IGGdgs~~~a~~L~e~~~i~vigiPkTIDNDl~ 130 (301)
T TIGR02482 86 NLKKLGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGLPGTIDNDIP 130 (301)
T ss_pred HHHHcCCCEEEEeCCchHHHHHHHHHHhhCCCEEeecccccCCCc
Confidence 355556777999999999877753 79999999998886654
No 341
>PF09884 DUF2111: Uncharacterized protein conserved in archaea (DUF2111); InterPro: IPR012029 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, members of PIRSF036667 from PIRSF possess a domain homologous to these proteins fused within a signal transduction sensor protein containing PAS/PAC and GAF domains. Therefore, it is possible that members of this family are involved in signal transduction (possibly as a sensor).
Probab=23.82 E-value=25 Score=25.11 Aligned_cols=20 Identities=35% Similarity=0.576 Sum_probs=16.4
Q ss_pred hHHHHHHhCCceeecccccc
Q 043290 368 SILESLWYGVPIATWPIYAE 387 (430)
Q Consensus 368 s~~eal~~GvP~v~~P~~~D 387 (430)
+-.+.-|.|+|+++.|+..+
T Consensus 50 ~P~~G~Y~G~PViV~PI~~~ 69 (84)
T PF09884_consen 50 TPIEGPYKGVPVIVAPIKDE 69 (84)
T ss_pred ccCCcccCCeeEEEEEEEcC
Confidence 45567899999999999665
No 342
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.73 E-value=1e+02 Score=28.05 Aligned_cols=35 Identities=14% Similarity=0.113 Sum_probs=26.0
Q ss_pred chhhhhccCceeEEEeccCchhHHHHHHh----CCceeecc
Q 043290 347 PQVEILAHKAIGGFVSHCGWNSILESLWY----GVPIATWP 383 (430)
Q Consensus 347 pq~~iL~~~~~~~~itHgG~~s~~eal~~----GvP~v~~P 383 (430)
++..+...+++ +|+=||-||++.|.+. ++|++++-
T Consensus 35 ~~~~~~~~~d~--vi~iGGDGT~L~aa~~~~~~~~PilgIn 73 (272)
T PRK02231 35 SLEEIGQRAQL--AIVIGGDGNMLGRARVLAKYDIPLIGIN 73 (272)
T ss_pred ChHHhCcCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEe
Confidence 33444455666 9999999999988653 68988765
No 343
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=23.62 E-value=2e+02 Score=21.84 Aligned_cols=35 Identities=11% Similarity=0.170 Sum_probs=27.6
Q ss_pred CCCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCCeE
Q 043290 1 MKKAELIFVPSPGIGHLVSTLEFAKHLTDRDDRIS 35 (430)
Q Consensus 1 m~~~~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~ 35 (430)
|++.||++++..+.|--.=.-.+-......|.++.
T Consensus 1 m~~kkIllvC~~G~sTSll~~km~~~~~~~gi~~~ 35 (106)
T PRK10499 1 MEKKHIYLFCSAGMSTSLLVSKMRAQAEKYEVPVI 35 (106)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHHHHHCCCCEE
Confidence 76678999999999877766677777788897744
No 344
>PRK11269 glyoxylate carboligase; Provisional
Probab=23.62 E-value=96 Score=31.85 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=22.1
Q ss_pred eeEEEeccC------chhHHHHHHhCCceeecc
Q 043290 357 IGGFVSHCG------WNSILESLWYGVPIATWP 383 (430)
Q Consensus 357 ~~~~itHgG------~~s~~eal~~GvP~v~~P 383 (430)
++++++|.| .+++++|.+.++|||++.
T Consensus 69 ~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~ 101 (591)
T PRK11269 69 IGVCIGTSGPAGTDMITGLYSASADSIPILCIT 101 (591)
T ss_pred cEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 444777777 679999999999999974
No 345
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=23.57 E-value=1.5e+02 Score=30.37 Aligned_cols=27 Identities=19% Similarity=0.270 Sum_probs=22.2
Q ss_pred eeEEEeccCch------hHHHHHHhCCceeecc
Q 043290 357 IGGFVSHCGWN------SILESLWYGVPIATWP 383 (430)
Q Consensus 357 ~~~~itHgG~~------s~~eal~~GvP~v~~P 383 (430)
.+++++|.|-| ++.+|...++|||++.
T Consensus 68 ~gv~~~t~GpG~~N~l~~i~~A~~~~~Pvlvi~ 100 (574)
T PRK06882 68 VGCVLVTSGPGATNAITGIATAYTDSVPLVILS 100 (574)
T ss_pred CeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 44488888855 7889999999999984
No 346
>PRK06270 homoserine dehydrogenase; Provisional
Probab=23.54 E-value=5.2e+02 Score=24.35 Aligned_cols=40 Identities=18% Similarity=0.198 Sum_probs=26.6
Q ss_pred chhhhhccCceeEEEe------ccC---chhHHHHHHhCCceee---ccccc
Q 043290 347 PQVEILAHKAIGGFVS------HCG---WNSILESLWYGVPIAT---WPIYA 386 (430)
Q Consensus 347 pq~~iL~~~~~~~~it------HgG---~~s~~eal~~GvP~v~---~P~~~ 386 (430)
.-.++|..+++.++|- |+| ..-+.+||.+|+++|+ -|+..
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~ 131 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLAL 131 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHh
Confidence 5566776554443554 443 4456899999999999 47643
No 347
>PRK05858 hypothetical protein; Provisional
Probab=23.49 E-value=1.3e+02 Score=30.48 Aligned_cols=26 Identities=15% Similarity=0.192 Sum_probs=21.3
Q ss_pred eEEEeccCch------hHHHHHHhCCceeecc
Q 043290 358 GGFVSHCGWN------SILESLWYGVPIATWP 383 (430)
Q Consensus 358 ~~~itHgG~~------s~~eal~~GvP~v~~P 383 (430)
+++++|.|-| ++++|-..++|||++.
T Consensus 69 gv~~~t~GpG~~n~~~~i~~A~~~~~Pvl~i~ 100 (542)
T PRK05858 69 GVAVLTAGPGVTNGMSAMAAAQFNQSPLVVLG 100 (542)
T ss_pred eEEEEcCCchHHHHHHHHHHHHhcCCCEEEEe
Confidence 3378887754 8899999999999975
No 348
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=23.45 E-value=4.7e+02 Score=22.33 Aligned_cols=38 Identities=21% Similarity=0.359 Sum_probs=30.3
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecCCCC
Q 043290 6 LIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMKLAV 45 (430)
Q Consensus 6 i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~ 45 (430)
|+|+=..+-|--.=...||..+..+|.+ |.+++.....
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~~~~--v~lis~D~~R 41 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLKGKK--VALISADTYR 41 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT----EEEEEESTSS
T ss_pred EEEECCCCCchHhHHHHHHHHHhhcccc--ceeecCCCCC
Confidence 6667777889999999999999999988 8899976443
No 349
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=23.37 E-value=64 Score=26.79 Aligned_cols=28 Identities=25% Similarity=0.129 Sum_probs=16.6
Q ss_pred hhHHHHhhhhceeEEeecccccCCcccCHhHHHHHHHHhh
Q 043290 390 LNAFRMVKEQGLALDLRLDYRVGSDLVMACDIESAVRCLM 429 (430)
Q Consensus 390 ~~a~rv~~~~G~G~~~~~~~~~~~~~~~~~~l~~ai~~vl 429 (430)
+.+..=.+ -|+|+ .+|+|+|.++|++++
T Consensus 103 d~~~Fe~~-cGVGV-----------~VT~E~I~~~V~~~i 130 (164)
T PF04558_consen 103 DVAEFEKA-CGVGV-----------VVTPEQIEAAVEKYI 130 (164)
T ss_dssp -HHHHHHT-TTTT---------------HHHHHHHHHHHH
T ss_pred CHHHHHHH-cCCCe-----------EECHHHHHHHHHHHH
Confidence 34433334 49997 468999999999876
No 350
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=23.29 E-value=83 Score=30.36 Aligned_cols=39 Identities=15% Similarity=0.379 Sum_probs=30.9
Q ss_pred CCCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecC
Q 043290 1 MKKAELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMK 42 (430)
Q Consensus 1 m~~~~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (430)
++.+||++.-.++-|=+ -...+.+.|.+.|++ |.++.++
T Consensus 1 l~~k~IllgiTGSiaa~-~~~~ll~~L~~~g~~--V~vv~T~ 39 (390)
T TIGR00521 1 LENKKILLGVTGGIAAY-KTVELVRELVRQGAE--VKVIMTE 39 (390)
T ss_pred CCCCEEEEEEeCHHHHH-HHHHHHHHHHhCCCE--EEEEECH
Confidence 35568888888776654 489999999999988 7777766
No 351
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=22.79 E-value=5.8e+02 Score=25.13 Aligned_cols=37 Identities=16% Similarity=0.328 Sum_probs=31.8
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecCC
Q 043290 5 ELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMKL 43 (430)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~ 43 (430)
.|+|+-.++.|-..-...||..|.++|++ |.+++...
T Consensus 97 vI~lvG~~GsGKTTtaakLA~~L~~~g~k--V~lV~~D~ 133 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLARYFKKKGLK--VGLVAADT 133 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcCCe--EEEecCCC
Confidence 57788888999999999999999999987 87888653
No 352
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=22.77 E-value=3.4e+02 Score=20.40 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=18.1
Q ss_pred CCHHHHHHHHHHHHhCCCCeEEEEEecC
Q 043290 15 GHLVSTLEFAKHLTDRDDRISVTLLSMK 42 (430)
Q Consensus 15 GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (430)
++-.=++.+++.|.+.|.+ +++++
T Consensus 10 ~~k~~~~~~~~~l~~~G~~----l~aT~ 33 (110)
T cd01424 10 RDKPEAVEIAKRLAELGFK----LVATE 33 (110)
T ss_pred CcHhHHHHHHHHHHHCCCE----EEEch
Confidence 3556788999999999955 56665
No 353
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=22.47 E-value=87 Score=30.33 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=30.8
Q ss_pred CCCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecC
Q 043290 1 MKKAELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMK 42 (430)
Q Consensus 1 m~~~~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (430)
|+++||++.-.++-+ ..=...|.+.|.++|++ |.++.++
T Consensus 4 l~~k~IllgvTGsia-a~k~~~lv~~L~~~g~~--V~vv~T~ 42 (399)
T PRK05579 4 LAGKRIVLGVSGGIA-AYKALELVRRLRKAGAD--VRVVMTE 42 (399)
T ss_pred CCCCeEEEEEeCHHH-HHHHHHHHHHHHhCCCE--EEEEECH
Confidence 456689888888764 44778999999999998 7777766
No 354
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=22.41 E-value=7e+02 Score=24.50 Aligned_cols=37 Identities=22% Similarity=0.320 Sum_probs=30.9
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHH-hCCCCeEEEEEecCC
Q 043290 5 ELIFVPSPGIGHLVSTLEFAKHLT-DRDDRISVTLLSMKL 43 (430)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~La~~L~-~rGH~v~Vt~~~~~~ 43 (430)
-|+++-.++.|-..-...||..|. ++|.+ |.+++...
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~k--V~lV~~D~ 138 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKK--VLLVACDL 138 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCe--EEEEeccc
Confidence 467777889999999999999997 68977 88888753
No 355
>PLN02939 transferase, transferring glycosyl groups
Probab=22.33 E-value=1.5e+02 Score=32.29 Aligned_cols=39 Identities=13% Similarity=0.120 Sum_probs=28.9
Q ss_pred CcEEEEEcCC------CCCCHHHHHHHHHHHHhCCCCeEEEEEecCC
Q 043290 3 KAELIFVPSP------GIGHLVSTLEFAKHLTDRDDRISVTLLSMKL 43 (430)
Q Consensus 3 ~~~i~~~~~p------~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~ 43 (430)
++||++++.= ..|=-...-.|.++|++.||+ |.+++|..
T Consensus 481 ~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~Ghd--V~VIlP~Y 525 (977)
T PLN02939 481 GLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHL--VEIVLPKY 525 (977)
T ss_pred CCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCe--EEEEeCCC
Confidence 5688887642 334445567899999999999 88899764
No 356
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=22.25 E-value=4.5e+02 Score=23.68 Aligned_cols=88 Identities=16% Similarity=0.154 Sum_probs=51.3
Q ss_pred hHHHHHhhcCCCCcEEEEeecCCccCCHHHHHHHHHHHHhCCCcEEEEEecCCCCCccccccccCCCCCCChhHHHhhcC
Q 043290 259 QKIFQWLDDLAESSVVFLCFGSSGSFDVAQVKEIAIGLERSGYNFLWSLRVSCPKDEASAHRYVTNNGVFPEGFLERIKG 338 (430)
Q Consensus 259 ~~l~~~l~~~~~~~vVyvsfGS~~~~~~~~~~~~~~al~~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (430)
+.+.+++.+. +.+..++.|+ +....+.+..-|.+.|..+... ... ..
T Consensus 119 ~~~~~~i~~a--~~I~i~G~G~----s~~~A~~~~~~l~~~g~~~~~~-~d~-------------------~~------- 165 (278)
T PRK11557 119 HECVTMLRSA--RRIILTGIGA----SGLVAQNFAWKLMKIGINAVAE-RDM-------------------HA------- 165 (278)
T ss_pred HHHHHHHhcC--CeEEEEecCh----hHHHHHHHHHHHhhCCCeEEEc-CCh-------------------HH-------
Confidence 4455666663 4566667765 2333455666677777776542 110 00
Q ss_pred ceEEEeccchhhhhccCceeEEEeccCchh-----HHHHHHhCCceeecccc
Q 043290 339 RGMICGWVPQVEILAHKAIGGFVSHCGWNS-----ILESLWYGVPIATWPIY 385 (430)
Q Consensus 339 ~~~v~~~~pq~~iL~~~~~~~~itHgG~~s-----~~eal~~GvP~v~~P~~ 385 (430)
...+...+...++-.+|++.|.+. +..|-..|+|+|++--.
T Consensus 166 ------~~~~~~~~~~~Dv~I~iS~sg~~~~~~~~~~~ak~~ga~iI~IT~~ 211 (278)
T PRK11557 166 ------LLATVQALSPDDLLLAISYSGERRELNLAADEALRVGAKVLAITGF 211 (278)
T ss_pred ------HHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHHcCCCEEEEcCC
Confidence 011223345556667899999664 55567789999987643
No 357
>PRK08266 hypothetical protein; Provisional
Probab=22.24 E-value=1.4e+02 Score=30.32 Aligned_cols=26 Identities=15% Similarity=0.125 Sum_probs=21.8
Q ss_pred eEEEeccCch------hHHHHHHhCCceeecc
Q 043290 358 GGFVSHCGWN------SILESLWYGVPIATWP 383 (430)
Q Consensus 358 ~~~itHgG~~------s~~eal~~GvP~v~~P 383 (430)
+++++|.|-| ++.+|...++|||++-
T Consensus 70 ~v~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~ 101 (542)
T PRK08266 70 GVCSVVPGPGVLNAGAALLTAYGCNSPVLCLT 101 (542)
T ss_pred eEEEECCCCcHHHHHHHHHHHHhhCCCEEEEe
Confidence 3488888855 8899999999999974
No 358
>PF01995 DUF128: Domain of unknown function DUF128; InterPro: IPR002846 These archaebacterial proteins have no known function. The domain is found duplicated in some sequences.; PDB: 3NEK_B.
Probab=22.17 E-value=5e+02 Score=23.07 Aligned_cols=81 Identities=19% Similarity=0.222 Sum_probs=49.5
Q ss_pred CCcEEEEeecCCccCCHHHHHHHHHHHHhCCCcEEEEEecCCCCCccccccccCCCCCCChhHHHhhcCceEEEeccchh
Q 043290 270 ESSVVFLCFGSSGSFDVAQVKEIAIGLERSGYNFLWSLRVSCPKDEASAHRYVTNNGVFPEGFLERIKGRGMICGWVPQV 349 (430)
Q Consensus 270 ~~~vVyvsfGS~~~~~~~~~~~~~~al~~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~pq~ 349 (430)
..+.|..+|=.+.....+.++++++.|++.+..-+..+|....+ .+ ++-|.
T Consensus 144 G~G~ilAn~ReiP~~a~e~~~~il~~l~~~g~~Gil~iG~p~~~-------------vl----------gvpv~------ 194 (236)
T PF01995_consen 144 GEGKILANFREIPMSAREKAEEILEKLEKAGFSGILEIGEPNEP-------------VL----------GVPVE------ 194 (236)
T ss_dssp SSSEEEEEEEEEETTTHHHHHHHHHHH---T-TTEEEE--TT---------------BT----------TB---------
T ss_pred CCceEeeeeecCchhHHHHHHHHHHHhhhcccceeEEeCCCCCc-------------cc----------CCccC------
Confidence 46789999988888889999999999999999989998864211 11 01111
Q ss_pred hhhccCceeEEEeccCchhHHHHHHhCCceeeccc
Q 043290 350 EILAHKAIGGFVSHCGWNSILESLWYGVPIATWPI 384 (430)
Q Consensus 350 ~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~P~ 384 (430)
..-.+++.=||.|-++-+.-+|+|+=.-+.
T Consensus 195 -----~~~~Giv~~GG~Npia~~~E~Gi~i~~~~~ 224 (236)
T PF01995_consen 195 -----PGMVGIVVIGGLNPIAAAVEAGIPIEIKAM 224 (236)
T ss_dssp -----TTEEEEEEE-TTHHHHHHHHTT---EEEEE
T ss_pred -----CCeEEEEEEecCcHHHHHHHcCCeeEeeeh
Confidence 112236777999999999999998765543
No 359
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=22.00 E-value=2.2e+02 Score=27.31 Aligned_cols=51 Identities=18% Similarity=0.145 Sum_probs=39.4
Q ss_pred hcHhHHHHHhhcCCCCcEEEEeecCCccCCHHHHHHHHHHHHhCCCcEEEEE
Q 043290 256 AQYQKIFQWLDDLAESSVVFLCFGSSGSFDVAQVKEIAIGLERSGYNFLWSL 307 (430)
Q Consensus 256 ~~~~~l~~~l~~~~~~~vVyvsfGS~~~~~~~~~~~~~~al~~~~~~~vw~~ 307 (430)
..-+...+|...++.+ -|.+-.-|+-..+....++++++|.+.|+.+....
T Consensus 232 ~i~~~Y~~W~~~~~~~-~V~l~Y~smyg~T~~ma~aiaegl~~~gv~v~~~~ 282 (388)
T COG0426 232 EIVEAYRDWAEGQPKG-KVDLIYDSMYGNTEKMAQAIAEGLMKEGVDVEVIN 282 (388)
T ss_pred HHHHHHHHHHccCCcc-eEEEEEecccCCHHHHHHHHHHHhhhcCCceEEEE
Confidence 4567788899988655 34444677777788888999999999999887654
No 360
>KOG3125 consensus Thymidine kinase [Nucleotide transport and metabolism]
Probab=21.83 E-value=5.2e+02 Score=22.27 Aligned_cols=96 Identities=11% Similarity=0.038 Sum_probs=60.4
Q ss_pred CCcEEEEeecCCccCCHHHHHHHHHHHHhCCCcEEEEEecCCCCCccccccccCCCCCCChhHHHhhcCceEEEeccchh
Q 043290 270 ESSVVFLCFGSSGSFDVAQVKEIAIGLERSGYNFLWSLRVSCPKDEASAHRYVTNNGVFPEGFLERIKGRGMICGWVPQV 349 (430)
Q Consensus 270 ~~~vVyvsfGS~~~~~~~~~~~~~~al~~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~pq~ 349 (430)
.++.|-|-+|-|.......+...++...-.|++++..=-....+ |
T Consensus 25 t~G~i~vI~gPMfSGKTt~LLrr~r~~~~~grrv~liK~~kDTR-------y---------------------------- 69 (234)
T KOG3125|consen 25 TRGTIHVILGPMFSGKTTELLRRIRREIIAGRRVLLIKYAKDTR-------Y---------------------------- 69 (234)
T ss_pred CCceEEEEeccccCcchHHHHHHHHHHHhcCceEEEEEecCCcc-------c----------------------------
Confidence 34678888999987766666665666666788876552222100 0
Q ss_pred hhhccCceeEEEeccCchhHHHH--------------HHhCCceeecc---cccccchhHHHHhhhhceeEEee
Q 043290 350 EILAHKAIGGFVSHCGWNSILES--------------LWYGVPIATWP---IYAEQQLNAFRMVKEQGLALDLR 406 (430)
Q Consensus 350 ~iL~~~~~~~~itHgG~~s~~ea--------------l~~GvP~v~~P---~~~DQ~~~a~rv~~~~G~G~~~~ 406 (430)
..+. ++||+|.....++ +...|-+|.+- ||+||....+.+++.-|.=+.+.
T Consensus 70 ----~~~s--i~Thdg~~~~c~~lp~a~~~s~f~~d~~~~~vdVigIDEaQFf~dl~efc~evAd~~Gk~Viva 137 (234)
T KOG3125|consen 70 ----ESSS--IVTHDGIEMPCWALPDASFLSEFGKDALNGDVDVIGIDEAQFFGDLYEFCREVADVHGKTVIVA 137 (234)
T ss_pred ----chhe--eEeccCCcccccccCCchhHHHHHHHHhcCcceEEEecHHHHhHHHHHHHHHHHhccCCEEEEE
Confidence 1133 8888887544443 43457777765 68899999999988336555443
No 361
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=21.75 E-value=1.5e+02 Score=30.16 Aligned_cols=26 Identities=19% Similarity=0.364 Sum_probs=22.0
Q ss_pred eEEEeccCch------hHHHHHHhCCceeecc
Q 043290 358 GGFVSHCGWN------SILESLWYGVPIATWP 383 (430)
Q Consensus 358 ~~~itHgG~~------s~~eal~~GvP~v~~P 383 (430)
+++++|.|-| ++.||...++|||++-
T Consensus 65 gv~~~t~GpG~~n~~~~l~~A~~~~~Pvl~i~ 96 (548)
T PRK08978 65 GVCIATSGPGATNLITGLADALLDSVPVVAIT 96 (548)
T ss_pred EEEEECCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 4489998855 8899999999999984
No 362
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=21.66 E-value=43 Score=27.45 Aligned_cols=30 Identities=23% Similarity=0.313 Sum_probs=22.4
Q ss_pred EEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecC
Q 043290 6 LIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMK 42 (430)
Q Consensus 6 i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (430)
|.++-.+..| .++|..|+++||+ |++.+..
T Consensus 2 I~ViGaG~~G-----~AlA~~la~~g~~--V~l~~~~ 31 (157)
T PF01210_consen 2 IAVIGAGNWG-----TALAALLADNGHE--VTLWGRD 31 (157)
T ss_dssp EEEESSSHHH-----HHHHHHHHHCTEE--EEEETSC
T ss_pred EEEECcCHHH-----HHHHHHHHHcCCE--EEEEecc
Confidence 4455444444 4789999999999 9999975
No 363
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=21.66 E-value=6.7e+02 Score=23.45 Aligned_cols=27 Identities=15% Similarity=0.161 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHHHHHHhCCCCeEEEEEec
Q 043290 13 GIGHLVSTLEFAKHLTDRDDRISVTLLSM 41 (430)
Q Consensus 13 ~~GH~~P~l~La~~L~~rGH~v~Vt~~~~ 41 (430)
..|--+-++.|++.|.++||+ +++++.
T Consensus 13 ~GG~e~~~~~l~~~l~~~~~~--~~v~~~ 39 (374)
T TIGR03088 13 VGGLENGLVNLINHLPADRYR--HAVVAL 39 (374)
T ss_pred CCcHHHHHHHHHhhccccccc--eEEEEc
Confidence 356668899999999999988 666763
No 364
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=21.63 E-value=9.6e+02 Score=25.25 Aligned_cols=39 Identities=18% Similarity=0.395 Sum_probs=30.0
Q ss_pred CCCcEEEEEcCC-CCCCHHHHHHHHHHHHhCCCCeEEEEEecC
Q 043290 1 MKKAELIFVPSP-GIGHLVSTLEFAKHLTDRDDRISVTLLSMK 42 (430)
Q Consensus 1 m~~~~i~~~~~p-~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (430)
|.| .|.+.+.. ..|--.-.+.|++.|.++|.+ |.++-|-
T Consensus 1 m~k-~l~I~~T~t~~GKT~vslgL~~~L~~~G~~--Vg~fKPi 40 (684)
T PRK05632 1 MSR-SIYLAPTGTGVGLTSVSLGLMRALERKGVK--VGFFKPI 40 (684)
T ss_pred CCc-EEEEEECCCCCCHHHHHHHHHHHHHhCCCe--EEEeCCc
Confidence 443 46666444 479999999999999999977 8888753
No 365
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=21.49 E-value=2.8e+02 Score=25.28 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=17.2
Q ss_pred EEeccCchhHHHHHHh-----CCceee-ccc
Q 043290 360 FVSHCGWNSILESLWY-----GVPIAT-WPI 384 (430)
Q Consensus 360 ~itHgG~~s~~eal~~-----GvP~v~-~P~ 384 (430)
+|.-||-||+.|++.. ..|.++ +|.
T Consensus 61 ivv~GGDGTl~~v~~~l~~~~~~~~lgiiP~ 91 (293)
T TIGR00147 61 VIAGGGDGTINEVVNALIQLDDIPALGILPL 91 (293)
T ss_pred EEEECCCChHHHHHHHHhcCCCCCcEEEEcC
Confidence 8888999988886543 344444 775
No 366
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=21.34 E-value=1.2e+02 Score=29.63 Aligned_cols=34 Identities=21% Similarity=0.226 Sum_probs=25.8
Q ss_pred CCCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEec
Q 043290 1 MKKAELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSM 41 (430)
Q Consensus 1 m~~~~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~ 41 (430)
|+.++|.|+=.+..| +.+|..|+++||+ |+.+-.
T Consensus 1 m~~~kI~VIGlG~~G-----~~~A~~La~~G~~--V~~~D~ 34 (415)
T PRK11064 1 MSFETISVIGLGYIG-----LPTAAAFASRQKQ--VIGVDI 34 (415)
T ss_pred CCccEEEEECcchhh-----HHHHHHHHhCCCE--EEEEeC
Confidence 777788888555554 4678889999999 777764
No 367
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=21.34 E-value=2e+02 Score=22.16 Aligned_cols=36 Identities=14% Similarity=0.280 Sum_probs=31.4
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecC
Q 043290 5 ELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMK 42 (430)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (430)
||++..-++.|-......|++.|+++|.+ |.++...
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~--V~~id~D 36 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKP--VLAIDAD 36 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCc--EEEEECC
Confidence 48888999999999999999999999987 7777754
No 368
>PLN02929 NADH kinase
Probab=21.33 E-value=1.8e+02 Score=26.86 Aligned_cols=29 Identities=14% Similarity=0.181 Sum_probs=23.0
Q ss_pred cCceeEEEeccCchhHHHHHH---hCCceeeccc
Q 043290 354 HKAIGGFVSHCGWNSILESLW---YGVPIATWPI 384 (430)
Q Consensus 354 ~~~~~~~itHgG~~s~~eal~---~GvP~v~~P~ 384 (430)
.+++ +|+-||-||++.|.. .++|++++=.
T Consensus 64 ~~Dl--vi~lGGDGT~L~aa~~~~~~iPvlGIN~ 95 (301)
T PLN02929 64 DVDL--VVAVGGDGTLLQASHFLDDSIPVLGVNS 95 (301)
T ss_pred CCCE--EEEECCcHHHHHHHHHcCCCCcEEEEEC
Confidence 3455 999999999999855 4689888755
No 369
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=21.31 E-value=5.6e+02 Score=23.53 Aligned_cols=14 Identities=0% Similarity=0.055 Sum_probs=11.4
Q ss_pred cCHhHHHHHHHHhh
Q 043290 416 VMACDIESAVRCLM 429 (430)
Q Consensus 416 ~~~~~l~~ai~~vl 429 (430)
-+.++|.++|++.+
T Consensus 160 ~~~~eL~~ai~~Al 173 (287)
T TIGR02177 160 GDVAHLKEIIKEAI 173 (287)
T ss_pred CCHHHHHHHHHHHH
Confidence 57888999988875
No 370
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=21.26 E-value=1.4e+02 Score=26.72 Aligned_cols=38 Identities=18% Similarity=0.392 Sum_probs=31.4
Q ss_pred CCCcEEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecC
Q 043290 1 MKKAELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMK 42 (430)
Q Consensus 1 m~~~~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (430)
|+. |+|+.=++-|--.-...||..|+++|++ |-++=..
T Consensus 1 m~~--iav~~KGGvGKTT~~~nLA~~La~~G~k--VlliD~D 38 (270)
T cd02040 1 MRQ--IAIYGKGGIGKSTTTQNLSAALAEMGKK--VMIVGCD 38 (270)
T ss_pred CcE--EEEEeCCcCCHHHHHHHHHHHHHhCCCe--EEEEEcC
Confidence 654 8888778889999999999999999988 6666543
No 371
>PRK05920 aromatic acid decarboxylase; Validated
Probab=21.23 E-value=1.1e+02 Score=26.49 Aligned_cols=36 Identities=17% Similarity=0.241 Sum_probs=28.3
Q ss_pred cEEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecC
Q 043290 4 AELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMK 42 (430)
Q Consensus 4 ~~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (430)
+||++.-.++-+= .=...+.+.|.+.||+ |+++.++
T Consensus 4 krIllgITGsiaa-~ka~~lvr~L~~~g~~--V~vi~T~ 39 (204)
T PRK05920 4 KRIVLAITGASGA-IYGVRLLECLLAADYE--VHLVISK 39 (204)
T ss_pred CEEEEEEeCHHHH-HHHHHHHHHHHHCCCE--EEEEECh
Confidence 3677776665554 6889999999999999 7788876
No 372
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=21.23 E-value=1.9e+02 Score=24.62 Aligned_cols=36 Identities=14% Similarity=0.334 Sum_probs=26.3
Q ss_pred cEEEEEc--CCCCCCHHHHHHHHHHHHhCCCCeEEEEEec
Q 043290 4 AELIFVP--SPGIGHLVSTLEFAKHLTDRDDRISVTLLSM 41 (430)
Q Consensus 4 ~~i~~~~--~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~ 41 (430)
+|++.++ -++-|--.-...||..|+++|++ |.++-.
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~r--VllID~ 54 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYK--TLLIDG 54 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCe--EEEEeC
Confidence 4444444 34667888899999999999988 766653
No 373
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=21.16 E-value=85 Score=30.15 Aligned_cols=28 Identities=11% Similarity=0.019 Sum_probs=22.1
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCC
Q 043290 5 ELIFVPSPGIGHLVSTLEFAKHLTDRDD 32 (430)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~La~~L~~rGH 32 (430)
-|++|+++..|+=+-+..+|.+||++|+
T Consensus 101 PvvIFSHGlgg~R~~yS~~~~eLAS~Gy 128 (379)
T PF03403_consen 101 PVVIFSHGLGGSRTSYSAICGELASHGY 128 (379)
T ss_dssp EEEEEE--TT--TTTTHHHHHHHHHTT-
T ss_pred CEEEEeCCCCcchhhHHHHHHHHHhCCe
Confidence 4899999999999999999999999993
No 374
>PRK00784 cobyric acid synthase; Provisional
Probab=21.15 E-value=8.2e+02 Score=24.42 Aligned_cols=34 Identities=18% Similarity=0.225 Sum_probs=27.1
Q ss_pred EEEEcC-CCCCCHHHHHHHHHHHHhCCCCeEEEEEec
Q 043290 6 LIFVPS-PGIGHLVSTLEFAKHLTDRDDRISVTLLSM 41 (430)
Q Consensus 6 i~~~~~-p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~ 41 (430)
|.+... ..-|-..-...|++.|+++|.+ |..+-+
T Consensus 5 ifItGT~T~vGKT~vt~~L~~~l~~~G~~--v~~~Kp 39 (488)
T PRK00784 5 LMVQGTASDAGKSTLVAGLCRILARRGYR--VAPFKA 39 (488)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCe--Eecccc
Confidence 566544 4579999999999999999977 776665
No 375
>PF01903 CbiX: CbiX; InterPro: IPR002762 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the CbiX protein, which functions as a cobalt-chelatase in the anaerobic biosynthesis of cobalamin. It catalyses the insertion of cobalt into sirohydrochlorin. The structure of CbiX from Archaeoglobus fulgidus consists of a central mixed beta-sheet flanked by four alpha-helices, although it is about half the size of other Class II tetrapyrrole chelatases []. The CbiX proteins found in archaea appear to be shorter than those found in eubacteria [].; GO: 0016829 lyase activity, 0046872 metal ion binding, 0009236 cobalamin biosynthetic process; PDB: 2XWQ_C 2DJ5_A 1TJN_A 2XWS_A 3LYH_B 2JH3_D.
Probab=21.06 E-value=2.3e+02 Score=20.97 Aligned_cols=37 Identities=16% Similarity=0.021 Sum_probs=18.9
Q ss_pred EEeccCchhH-----HHHHHhCCc---eeecccccccchhHHHHh
Q 043290 360 FVSHCGWNSI-----LESLWYGVP---IATWPIYAEQQLNAFRMV 396 (430)
Q Consensus 360 ~itHgG~~s~-----~eal~~GvP---~v~~P~~~DQ~~~a~rv~ 396 (430)
|+.+|++-.- .+.+....| +.+.+-.++.+..+..++
T Consensus 60 fL~~G~h~~~DIp~~l~~~~~~~~~~~v~~~~pLG~~p~l~~~l~ 104 (105)
T PF01903_consen 60 FLFPGYHVKRDIPEALAEARERHPGIEVRVAPPLGPHPLLAELLA 104 (105)
T ss_dssp SSSSSHHHHCHHHHHHCHHHHCSTTEEEEE---GGGSCCHHHHHH
T ss_pred eecCccchHhHHHHHHHHHHhhCCceEEEECCCCCCCHHHHHHHh
Confidence 5566554432 333444444 777777777777666554
No 376
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=20.99 E-value=3.8e+02 Score=20.30 Aligned_cols=36 Identities=33% Similarity=0.272 Sum_probs=24.1
Q ss_pred cEEEEeecCCccCCHHHHHHHHHHHHh-CC-CcEEEEE
Q 043290 272 SVVFLCFGSSGSFDVAQVKEIAIGLER-SG-YNFLWSL 307 (430)
Q Consensus 272 ~vVyvsfGS~~~~~~~~~~~~~~al~~-~~-~~~vw~~ 307 (430)
.+|+++.||-.....+.+.++++.+++ .+ .++-+.+
T Consensus 2 a~llv~HGS~~~~~~~~~~~l~~~l~~~~~~~~v~~af 39 (117)
T cd03414 2 AVVLVGRGSSDPDANADVAKIARLLEEGTGFARVETAF 39 (117)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 489999999644444667788888864 34 4554444
No 377
>PRK11519 tyrosine kinase; Provisional
Probab=20.88 E-value=1e+03 Score=25.24 Aligned_cols=36 Identities=19% Similarity=0.445 Sum_probs=28.7
Q ss_pred cEEEEEcC--CCCCCHHHHHHHHHHHHhCCCCeEEEEEec
Q 043290 4 AELIFVPS--PGIGHLVSTLEFAKHLTDRDDRISVTLLSM 41 (430)
Q Consensus 4 ~~i~~~~~--p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~ 41 (430)
.++++++. |+-|--.-...||..|+..|++ |-++-.
T Consensus 526 ~kvi~vts~~~geGKTt~a~nLA~~la~~g~r--vLlID~ 563 (719)
T PRK11519 526 NNVLMMTGVSPSIGKTFVCANLAAVISQTNKR--VLLIDC 563 (719)
T ss_pred ceEEEEECCCCCCCHHHHHHHHHHHHHhCCCc--EEEEeC
Confidence 35666554 6778999999999999999998 777754
No 378
>PRK06487 glycerate dehydrogenase; Provisional
Probab=20.78 E-value=5.2e+02 Score=24.07 Aligned_cols=101 Identities=19% Similarity=0.169 Sum_probs=58.9
Q ss_pred CCcEEEEeecCCccCCHHHHHHHHHHHHhCCCcEEEEEecCCCCCccccccccCCCCCCChhHHHhhcCceEEEeccchh
Q 043290 270 ESSVVFLCFGSSGSFDVAQVKEIAIGLERSGYNFLWSLRVSCPKDEASAHRYVTNNGVFPEGFLERIKGRGMICGWVPQV 349 (430)
Q Consensus 270 ~~~vVyvsfGS~~~~~~~~~~~~~~al~~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~pq~ 349 (430)
++.+-.+++|.+. +++++-++..|.+++..-+.. -+. ...+++-+
T Consensus 148 gktvgIiG~G~IG-------~~vA~~l~~fgm~V~~~~~~~-----------------~~~-----------~~~~~~l~ 192 (317)
T PRK06487 148 GKTLGLLGHGELG-------GAVARLAEAFGMRVLIGQLPG-----------------RPA-----------RPDRLPLD 192 (317)
T ss_pred CCEEEEECCCHHH-------HHHHHHHhhCCCEEEEECCCC-----------------Ccc-----------cccccCHH
Confidence 4568899999743 346666777788876542211 000 12345788
Q ss_pred hhhccCceeEEEeccCchhHHHHHHhCCceeecccccccchhHHHHhhhhcee-EEeecccccCCcccCHhHHHHHHHH
Q 043290 350 EILAHKAIGGFVSHCGWNSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLA-LDLRLDYRVGSDLVMACDIESAVRC 427 (430)
Q Consensus 350 ~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G-~~~~~~~~~~~~~~~~~~l~~ai~~ 427 (430)
++|+.+++ ++-|+-.+.-.+. ..|+..+... +=| +.+.... .+.+.++.|.+|+++
T Consensus 193 ell~~sDi--v~l~lPlt~~T~~----------------li~~~~~~~m-k~ga~lIN~aR---G~vVde~AL~~AL~~ 249 (317)
T PRK06487 193 ELLPQVDA--LTLHCPLTEHTRH----------------LIGARELALM-KPGALLINTAR---GGLVDEQALADALRS 249 (317)
T ss_pred HHHHhCCE--EEECCCCChHHhc----------------CcCHHHHhcC-CCCeEEEECCC---ccccCHHHHHHHHHc
Confidence 99999998 8888766544333 3455555543 433 2333221 126677777777653
No 379
>PF07801 DUF1647: Protein of unknown function (DUF1647); InterPro: IPR012444 This entry consists of hypothetical proteins of unknown function.
Probab=20.77 E-value=3.4e+02 Score=21.93 Aligned_cols=65 Identities=9% Similarity=0.157 Sum_probs=47.6
Q ss_pred CcEEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecCCCCChhhHHhhhhccCCCCCeEEEeCCCCC
Q 043290 3 KAELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMKLAVAPWVDAYAKSLTDSQPRICIIDLPPVD 72 (430)
Q Consensus 3 ~~~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 72 (430)
..+|+|++.-+.+|+.-.+.+.+.++....+-.+.++.=. ... ..++.+.....++++..+....
T Consensus 59 ~~~vvfVSa~S~~h~~~~~~~i~si~~~~P~~k~ilY~Lg--L~~---~~i~~L~~~~~n~evr~Fn~s~ 123 (142)
T PF07801_consen 59 SSDVVFVSATSDNHFNESMKSISSIRKFYPNHKIILYDLG--LSE---EQIKKLKKNFCNVEVRKFNFSK 123 (142)
T ss_pred CCccEEEEEecchHHHHHHHHHHHHHHHCCCCcEEEEeCC--CCH---HHHHHHHhcCCceEEEECCCcc
Confidence 4589999999999999999999999999866556566532 221 3455554445788888877553
No 380
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=20.72 E-value=1.6e+02 Score=25.94 Aligned_cols=49 Identities=18% Similarity=0.202 Sum_probs=36.9
Q ss_pred eeecccccccchhHHHHhhhhceeEEeeccc--ccCCcccCHhHHHHHHHHh
Q 043290 379 IATWPIYAEQQLNAFRMVKEQGLALDLRLDY--RVGSDLVMACDIESAVRCL 428 (430)
Q Consensus 379 ~v~~P~~~DQ~~~a~rv~~~~G~G~~~~~~~--~~~~~~~~~~~l~~ai~~v 428 (430)
.+++|+..|-+..|+|+++. |+...++... ..+.|..++..|+--++++
T Consensus 131 F~VlPY~~dD~v~arrLee~-GcaavMPl~aPIGSg~G~~n~~~l~iiie~a 181 (262)
T COG2022 131 FVVLPYTTDDPVLARRLEEA-GCAAVMPLGAPIGSGLGLQNPYNLEIIIEEA 181 (262)
T ss_pred CEEeeccCCCHHHHHHHHhc-CceEeccccccccCCcCcCCHHHHHHHHHhC
Confidence 46899999999999999998 9998777542 3345577777777666553
No 381
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=20.41 E-value=2.3e+02 Score=24.04 Aligned_cols=31 Identities=13% Similarity=0.054 Sum_probs=22.9
Q ss_pred eEEEEcCCcc-hHHHHHHhcCCceEEEecchh
Q 043290 114 TGLVLDFFCV-SMVDIAKELSLPSYIFLTSNL 144 (430)
Q Consensus 114 D~vV~D~~~~-~~~~~A~~lgiP~v~~~~~~~ 144 (430)
.++|-.++-. ++..+|+++|+|.+.+-|+..
T Consensus 61 ~~liGSSlGG~~A~~La~~~~~~avLiNPav~ 92 (187)
T PF05728_consen 61 VVLIGSSLGGFYATYLAERYGLPAVLINPAVR 92 (187)
T ss_pred eEEEEEChHHHHHHHHHHHhCCCEEEEcCCCC
Confidence 5677666555 467899999999987776544
No 382
>PRK06932 glycerate dehydrogenase; Provisional
Probab=20.38 E-value=5.5e+02 Score=23.87 Aligned_cols=101 Identities=19% Similarity=0.218 Sum_probs=58.3
Q ss_pred CCcEEEEeecCCccCCHHHHHHHHHHHHhCCCcEEEEEecCCCCCccccccccCCCCCCChhHHHhhcCceEEEeccchh
Q 043290 270 ESSVVFLCFGSSGSFDVAQVKEIAIGLERSGYNFLWSLRVSCPKDEASAHRYVTNNGVFPEGFLERIKGRGMICGWVPQV 349 (430)
Q Consensus 270 ~~~vVyvsfGS~~~~~~~~~~~~~~al~~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~pq~ 349 (430)
++.+-.|++|.+. +++++.++..|.+++..-+.. .. . ....+.+-+
T Consensus 147 gktvgIiG~G~IG-------~~va~~l~~fg~~V~~~~~~~------------------~~--------~-~~~~~~~l~ 192 (314)
T PRK06932 147 GSTLGVFGKGCLG-------TEVGRLAQALGMKVLYAEHKG------------------AS--------V-CREGYTPFE 192 (314)
T ss_pred CCEEEEECCCHHH-------HHHHHHHhcCCCEEEEECCCc------------------cc--------c-cccccCCHH
Confidence 4568899999743 345666677888876431110 00 0 012356789
Q ss_pred hhhccCceeEEEeccCchhHHHHHHhCCceeecccccccchhHHHHhhhhcee-EEeecccccCCcccCHhHHHHHHH
Q 043290 350 EILAHKAIGGFVSHCGWNSILESLWYGVPIATWPIYAEQQLNAFRMVKEQGLA-LDLRLDYRVGSDLVMACDIESAVR 426 (430)
Q Consensus 350 ~iL~~~~~~~~itHgG~~s~~eal~~GvP~v~~P~~~DQ~~~a~rv~~~~G~G-~~~~~~~~~~~~~~~~~~l~~ai~ 426 (430)
++|+.+++ ++-|+-.+.-.+.+ .|+.++... +=| +.+.... .+.+.++.|.+|++
T Consensus 193 ell~~sDi--v~l~~Plt~~T~~l----------------i~~~~l~~m-k~ga~lIN~aR---G~~Vde~AL~~aL~ 248 (314)
T PRK06932 193 EVLKQADI--VTLHCPLTETTQNL----------------INAETLALM-KPTAFLINTGR---GPLVDEQALLDALE 248 (314)
T ss_pred HHHHhCCE--EEEcCCCChHHhcc----------------cCHHHHHhC-CCCeEEEECCC---ccccCHHHHHHHHH
Confidence 99999998 88898766544333 455555543 333 2222221 12666677776665
No 383
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=20.24 E-value=7.7e+02 Score=25.32 Aligned_cols=52 Identities=6% Similarity=0.141 Sum_probs=29.4
Q ss_pred eccCchhHHHHHHhCC--ceee--ccc-ccccchhHHHHhhhhceeEEeecccccCCcccCHhHHHHHHHHhh
Q 043290 362 SHCGWNSILESLWYGV--PIAT--WPI-YAEQQLNAFRMVKEQGLALDLRLDYRVGSDLVMACDIESAVRCLM 429 (430)
Q Consensus 362 tHgG~~s~~eal~~Gv--P~v~--~P~-~~DQ~~~a~rv~~~~G~G~~~~~~~~~~~~~~~~~~l~~ai~~vl 429 (430)
.+||+|+...+....- |+.. +|- |.+. .....+.+. - .++++.|.+.|+++|
T Consensus 524 ~~GG~gs~v~~~l~~~~~~~~~~gi~d~f~~~-g~~~~l~~~---------~------Gl~~~~I~~~i~~~l 580 (581)
T PRK12315 524 LDGGFGEKIARYYGNSDMKVLNYGAKKEFNDR-VPVEELYKR---------N------HLTPEQIVEDILSVL 580 (581)
T ss_pred cCCCHHHHHHHHHHcCCCeEEEecCCCCCCCC-CCHHHHHHH---------H------CcCHHHHHHHHHHHh
Confidence 4699998777766443 3333 332 2222 222222211 1 578899999998876
No 384
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=20.23 E-value=5.4e+02 Score=21.86 Aligned_cols=35 Identities=14% Similarity=0.101 Sum_probs=22.7
Q ss_pred EEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEEEecC
Q 043290 5 ELIFVPSPGIGHLVSTLEFAKHLTDRDDRISVTLLSMK 42 (430)
Q Consensus 5 ~i~~~~~p~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~ 42 (430)
||+++..+..+-+. .|.+.+.+.++.+.|.++.+.
T Consensus 2 riail~sg~gs~~~---~ll~~~~~~~l~~~I~~vi~~ 36 (190)
T TIGR00639 2 RIVVLISGNGSNLQ---AIIDACKEGKIPASVVLVISN 36 (190)
T ss_pred eEEEEEcCCChhHH---HHHHHHHcCCCCceEEEEEEC
Confidence 58888887766655 455566776665556665443
No 385
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=20.23 E-value=4.8e+02 Score=21.47 Aligned_cols=84 Identities=21% Similarity=0.152 Sum_probs=49.3
Q ss_pred cCCHHHHHHHHHHHHhCCCcEEEEEecCCCCCccccccccCCCCCCChhHHHhhcCceEEEeccchhhhhccCceeEEE-
Q 043290 283 SFDVAQVKEIAIGLERSGYNFLWSLRVSCPKDEASAHRYVTNNGVFPEGFLERIKGRGMICGWVPQVEILAHKAIGGFV- 361 (430)
Q Consensus 283 ~~~~~~~~~~~~al~~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~pq~~iL~~~~~~~~i- 361 (430)
...++.+.++++..+..+..++....+. ...||.-+...+. .|-+++=+
T Consensus 36 HRtp~~~~~~~~~a~~~g~~viIa~AG~--------------aa~Lpgvva~~t~----------------~PVIgvP~~ 85 (156)
T TIGR01162 36 HRTPELMLEYAKEAEERGIKVIIAGAGG--------------AAHLPGMVAALTP----------------LPVIGVPVP 85 (156)
T ss_pred ccCHHHHHHHHHHHHHCCCeEEEEeCCc--------------cchhHHHHHhccC----------------CCEEEecCC
Confidence 5677888888888887778777776554 2345532211111 11111122
Q ss_pred --eccCchhHHHHHH--hCCceeecccccccchhHHHHhhh
Q 043290 362 --SHCGWNSILESLW--YGVPIATWPIYAEQQLNAFRMVKE 398 (430)
Q Consensus 362 --tHgG~~s~~eal~--~GvP~v~~P~~~DQ~~~a~rv~~~ 398 (430)
.=+|+.+.+-.+. .|+|+-++- .|.-.||+.++..
T Consensus 86 ~~~l~G~daLlS~vqmP~gvpvatv~--I~~~~nAa~~Aaq 124 (156)
T TIGR01162 86 SKALSGLDSLLSIVQMPSGVPVATVA--IGNAGNAALLAAQ 124 (156)
T ss_pred ccCCCCHHHHHHHhcCCCCCeeEEEE--cCChhHHHHHHHH
Confidence 2367777888877 788854443 4567788776543
No 386
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=20.12 E-value=1.3e+02 Score=30.87 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=22.1
Q ss_pred eEEEeccCchh------HHHHHHhCCceeecc
Q 043290 358 GGFVSHCGWNS------ILESLWYGVPIATWP 383 (430)
Q Consensus 358 ~~~itHgG~~s------~~eal~~GvP~v~~P 383 (430)
+++++|.|-|. ++||-..++|||++-
T Consensus 76 gv~~~t~GpG~~N~~~gl~~A~~~~~Pvl~I~ 107 (578)
T PRK06112 76 AVVTAQNGPAATLLVAPLAEALKASVPIVALV 107 (578)
T ss_pred EEEEeCCCCcHHHHHHHHHHHhhcCCCEEEEe
Confidence 34888888775 999999999999974
No 387
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=20.05 E-value=1.1e+02 Score=28.77 Aligned_cols=39 Identities=15% Similarity=0.246 Sum_probs=31.0
Q ss_pred hccCceeEEEeccCchhHHHHHH---hCCceeecccccccch
Q 043290 352 LAHKAIGGFVSHCGWNSILESLW---YGVPIATWPIYAEQQL 390 (430)
Q Consensus 352 L~~~~~~~~itHgG~~s~~eal~---~GvP~v~~P~~~DQ~~ 390 (430)
|..-++..+|.=||-+|...|.. .|+|+|++|-+-|-..
T Consensus 90 l~~~~Id~LivIGGdgS~~~a~~L~~~gi~vigiPkTIDNDl 131 (324)
T TIGR02483 90 LKELGLDALIAIGGDGTLGIARRLADKGLPVVGVPKTIDNDL 131 (324)
T ss_pred HHHcCCCEEEEECCchHHHHHHHHHhcCCCEEeeccccCCCC
Confidence 44456677999999999887755 5999999998887544
No 388
>PRK14098 glycogen synthase; Provisional
Probab=20.05 E-value=1.5e+02 Score=29.63 Aligned_cols=38 Identities=11% Similarity=0.118 Sum_probs=27.6
Q ss_pred cEEEEEcCC------CCCCHHHHHHHHHHHHhCCCCeEEEEEecCC
Q 043290 4 AELIFVPSP------GIGHLVSTLEFAKHLTDRDDRISVTLLSMKL 43 (430)
Q Consensus 4 ~~i~~~~~p------~~GH~~P~l~La~~L~~rGH~v~Vt~~~~~~ 43 (430)
+||++++.= ..|=-...-.|.++|+++||+ |.++.|..
T Consensus 6 ~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~--v~v~~P~y 49 (489)
T PRK14098 6 FKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFE--ARIMMPKY 49 (489)
T ss_pred cEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCe--EEEEcCCC
Confidence 568877642 334445677889999999999 87888753
No 389
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=20.05 E-value=1.3e+02 Score=25.35 Aligned_cols=34 Identities=15% Similarity=0.250 Sum_probs=25.5
Q ss_pred EEEEcCCCCCCHHH-HHHHHHHHH-hCCCCeEEEEEecC
Q 043290 6 LIFVPSPGIGHLVS-TLEFAKHLT-DRDDRISVTLLSMK 42 (430)
Q Consensus 6 i~~~~~p~~GH~~P-~l~La~~L~-~rGH~v~Vt~~~~~ 42 (430)
|++.-.++ ||... ...+.+.|. ++||+ |.++.++
T Consensus 2 i~~gitGs-g~~l~e~v~~l~~L~~~~g~e--V~vv~S~ 37 (174)
T TIGR02699 2 IAWGITGS-GDKLPETYSIMKDVKNRYGDE--IDVFLSK 37 (174)
T ss_pred EEEEEEcc-HHHHHHHHHHHHHHHHhcCCE--EEEEECH
Confidence 55555555 78766 889999998 46988 7788776
No 390
>PF00920 ILVD_EDD: Dehydratase family; InterPro: IPR000581 Two dehydratases, dihydroxy-acid dehydratase (4.2.1.9 from EC) (gene ilvD or ILV3) and 6-phosphogluconate dehydratase (4.2.1.12 from EC) (gene edd) have been shown to be evolutionary related []. Dihydroxy-acid dehydratase catalyses the fourth step in the biosynthesis of isoleucine and valine, the dehydratation of 2,3-dihydroxy-isovaleic acid into alpha-ketoisovaleric acid. 6-Phosphogluconate dehydratase catalyses the first step in the Entner-Doudoroff pathway, the dehydratation of 6-phospho-D-gluconate into 6-phospho-2-dehydro-3-deoxy-D-gluconate. Another protein containing this signature is the Escherichia coli hypothetical protein yjhG. The N-terminal part of the proteins contains a cysteine that could be involved in the binding of a 2Fe-2S iron-sulphur cluster [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GP4_B.
Probab=20.02 E-value=1.6e+02 Score=29.53 Aligned_cols=44 Identities=18% Similarity=0.287 Sum_probs=25.4
Q ss_pred HHHHHHHhhccCCCCceEEE----EcCCcchHHHHHHhcCCceEEEecch
Q 043290 98 VKNIVSSRANSGSLQVTGLV----LDFFCVSMVDIAKELSLPSYIFLTSN 143 (430)
Q Consensus 98 ~~~~l~~~~~~~~~~~D~vV----~D~~~~~~~~~A~~lgiP~v~~~~~~ 143 (430)
+.+.++...+ .+++|.+| ||-..++.+..|.++++|.+++...+
T Consensus 67 IAd~iE~~~~--a~~~Dg~V~l~gCDK~~Pg~lMaaarlniPsi~v~gGp 114 (521)
T PF00920_consen 67 IADSIEEMVR--AHPFDGMVLLGGCDKIVPGMLMAAARLNIPSIFVYGGP 114 (521)
T ss_dssp HHHHHHHHHT--T---SEEEEE--STTCCHHHHHHHHTTTS-EEE-----
T ss_pred HHHHHHHHHh--CCCcceEEEeccCCCccHHHHHHHHHcCCCEEEEecCC
Confidence 3344444443 34799888 78888888899999999988776544
No 391
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=20.01 E-value=3.9e+02 Score=27.56 Aligned_cols=48 Identities=10% Similarity=-0.023 Sum_probs=31.7
Q ss_pred HhHHHHHhhcCCCCcEEEEeecCCc--cCCHHHHHHHHHHHHhCCCcEEEEEecC
Q 043290 258 YQKIFQWLDDLAESSVVFLCFGSSG--SFDVAQVKEIAIGLERSGYNFLWSLRVS 310 (430)
Q Consensus 258 ~~~l~~~l~~~~~~~vVyvsfGS~~--~~~~~~~~~~~~al~~~~~~~vw~~~~~ 310 (430)
++.+..|...+ +..+ +||.- ..++++++++++.|++.+...+..+|++
T Consensus 134 ~~~v~~~~n~G---G~~i--LGSsR~~l~~~e~~~~i~e~l~~l~Id~LvvIGGd 183 (610)
T PLN03028 134 DDVLSTYKNQG---GYDL--LGRTKDQIRTTEQVNAALAACEALKLDGLVIIGGV 183 (610)
T ss_pred HHHHHHHHhcC---Cchh--ccCcCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 34466666653 2222 35433 3356788899999999888888888776
Done!