BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043293
(147 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C7F7|UGPI5_ARATH Uncharacterized GPI-anchored protein At1g27950 OS=Arabidopsis
thaliana GN=At1g27950 PE=1 SV=1
Length = 193
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
Query: 38 CGDQLADFSACLPFVGGKAKSPSPTCCSSITKEGSKTRKCLCLLVKDRNEPRHGFK---M 94
C + CL F GKA PS CC ++ + KCLC +++ K +
Sbjct: 35 CNQDFQKVTLCLDFATGKATIPSKKCCDAVEDIKERDPKCLCFVIQQAKTGGQALKDLGV 94
Query: 95 NATLALSLP-SVRHAPATVSDCPALLNLPPNSTDAQV 130
+ LP S + A++++CP LL + P+S DA V
Sbjct: 95 QEDKLIQLPTSCQLHNASITNCPKLLGISPSSPDAAV 131
>sp|Q38737|FIL1_ANTMA Stamen-specific protein FIL1 OS=Antirrhinum majus GN=FIL1 PE=2
SV=1
Length = 99
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
Query: 14 VLFTVFIVTSAGFVRSDFNKGRKGCGDQLADFSACLPFVG-GKAKSPSPTCCSSITKEGS 72
V+ TV + S +S+ + C LA+ +AC PFV G A +PS CC+++ S
Sbjct: 11 VMLTVLVAQSQLITQSE----AQTCSASLANLNACAPFVVLGAATTPSSDCCTAL---QS 63
Query: 73 KTRKCLC 79
+CLC
Sbjct: 64 VDHECLC 70
>sp|P43217|NLT11_PARJU Probable non-specific lipid-transfer protein (Fragment)
OS=Parietaria judaica GN=PMAI PE=1 SV=3
Length = 139
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 38 CGDQLADFSACLPFVGGKAKSPSPTCCSSITKEGSKTR 75
CG + CLPFV GK K PS CCS + +T+
Sbjct: 4 CGTMVRALMPCLPFVQGKEKEPSKGCCSGAKRLDGETK 41
>sp|P55958|NLT21_PARJU Probable non-specific lipid-transfer protein 2 OS=Parietaria
judaica PE=1 SV=1
Length = 133
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 34/92 (36%), Gaps = 10/92 (10%)
Query: 38 CGDQLADFSACLPFVGGKAKSPSPTCCSSITKEGSKTRKCLCLLVKDRNEPRHGFK--MN 95
CG + D CL FV G+ K PS CCS K L VK + R K +
Sbjct: 35 CGKVVQDIMPCLHFVKGEEKEPSKECCSGTKK--------LSEEVKTTEQKREACKCIVR 86
Query: 96 ATLALSLPSVRHAPATVSDCPALLNLPPNSTD 127
AT +S C LPP + D
Sbjct: 87 ATKGISGIKNELVAEVPKKCDIKTTLPPITAD 118
>sp|Q40905|NLT13_PARJU Probable non-specific lipid-transfer protein 1 OS=Parietaria
judaica PE=1 SV=1
Length = 138
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 38 CGDQLADFSACLPFVGGKAKSPSPTCCSSITKEGSKTR 75
CG + CLPFV GK K PS CCS + +T+
Sbjct: 40 CGTVVGALMPCLPFVQGKEKEPSKGCCSGAKRLDGETK 77
>sp|B4RT43|RL6_ALTMD 50S ribosomal protein L6 OS=Alteromonas macleodii (strain DSM 17117
/ Deep ecotype) GN=rplF PE=3 SV=1
Length = 177
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 76 KCLCLLVKDRNEPRHGFKMNATLALSLPSVRHAPATVS-DCPALLNLPPNSTDAQVVEQL 134
K L LL G K+N TL S P V P ++ + P+ + D QVV Q+
Sbjct: 85 KKLTLLGVGYRAQAQGSKLNLTLGFSHPVVYEMPEGITVETPSQTEIVVKGADKQVVGQV 144
Query: 135 AANSGG 140
AAN G
Sbjct: 145 AANIRG 150
>sp|O24356|MEN8_SILLA Protein MEN-8 OS=Silene latifolia GN=MEN-8 PE=3 SV=1
Length = 100
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 13 KVLFTVFIVTSAGFVRSDFNKGRKG-CGDQLADFSACLPFV--GGKAKSPSPTCCSSITK 69
K + +F+V A V+ ++ + G C QL + + C P+V G +PS CC++++
Sbjct: 12 KATWAIFLVALAILVQLKGSEAQAGGCASQLGNLNVCAPYVVPGAVNTNPSQECCAALS- 70
Query: 70 EGSKTRKCLC 79
C+C
Sbjct: 71 --GVNHDCMC 78
>sp|O04404|NLT12_PARJU Probable non-specific lipid-transfer protein 1 OS=Parietaria
judaica PE=1 SV=1
Length = 176
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 38 CGDQLADFSACLPFVGGKAKSPSPTCCSSITKEGSKTR 75
CG + CLPFV GK K PS CCS + +T+
Sbjct: 41 CGTVVRALMPCLPFVQGKEKEPSKGCCSGAKRLDGETK 78
>sp|Q8VYI9|NLTL5_ARATH Non-specific lipid-transfer protein-like protein At5g64080
OS=Arabidopsis thaliana GN=At5g64080 PE=1 SV=1
Length = 182
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Query: 38 CGDQLADFSACLPFV--GGKAKSPSPTCCSSITKEGSKTRKCLCLLVKDRNEPRHGFKMN 95
C + + + CL FV GG P TCCS + +CLC K G +N
Sbjct: 43 CSTLILNMADCLSFVSSGGTVAKPEGTCCSGLKTVLKADSQCLCEAFKSSAS--LGVTLN 100
Query: 96 ATLALSLPSV--RHAPA 110
T A +LP+ HAP+
Sbjct: 101 ITKASTLPAACKLHAPS 117
>sp|A2SLE2|RL6_METPP 50S ribosomal protein L6 OS=Methylibium petroleiphilum (strain PM1)
GN=rplF PE=3 SV=1
Length = 177
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 90 HGFKMNATLALSLPSVRHAPATVS-DCPALLNLPPNSTDAQVVEQLAAN 137
G K+N + S P V+ PA + +CP + +D QVV Q+AA
Sbjct: 99 QGAKLNLQVGFSHPVVKDMPAGIKVECPTQTEIVIKGSDRQVVGQIAAE 147
>sp|P04587|POL_HV1B5 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate BH5) GN=gag-pol PE=1 SV=3
Length = 1447
Score = 33.1 bits (74), Expect = 0.64, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 10/80 (12%)
Query: 36 KGCGDQLADF-SACLPFVGGKAK--------SPSPTCCSSITKEGSKTRKCLCLLVKDRN 86
K C ++ A+F L F+ GKA+ + SPT S T+ S TR+ L + +D N
Sbjct: 424 KDCTERQANFLREDLAFLQGKAREFSSEQTRANSPTISSEQTRANSPTRRELQVWGRDNN 483
Query: 87 EPRH-GFKMNATLALSLPSV 105
P G T++ + P +
Sbjct: 484 SPSEAGADRQGTVSFNFPQI 503
>sp|P03366|POL_HV1B1 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate BH10) GN=gag-pol PE=1 SV=3
Length = 1447
Score = 33.1 bits (74), Expect = 0.64, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 10/80 (12%)
Query: 36 KGCGDQLADF-SACLPFVGGKAK--------SPSPTCCSSITKEGSKTRKCLCLLVKDRN 86
K C ++ A+F L F+ GKA+ + SPT S T+ S TR+ L + +D N
Sbjct: 424 KDCTERQANFLREDLAFLQGKAREFSSEQTRANSPTISSEQTRANSPTRRELQVWGRDNN 483
Query: 87 EPRH-GFKMNATLALSLPSV 105
P G T++ + P +
Sbjct: 484 SPSEAGADRQGTVSFNFPQI 503
>sp|B1Y8C2|RL6_LEPCP 50S ribosomal protein L6 OS=Leptothrix cholodnii (strain ATCC 51168
/ LMG 8142 / SP-6) GN=rplF PE=3 SV=1
Length = 177
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 90 HGFKMNATLALSLPSVRHAPATVS-DCPALLNLPPNSTDAQVVEQLAAN 137
G K+N + S P V+ P + +CP + D QVV QLAA
Sbjct: 99 QGQKLNLQIGFSHPVVKEMPEGIKVECPTQTEILIKGADRQVVGQLAAE 147
>sp|O04403|NLT22_PARJU Probable non-specific lipid-transfer protein 2 OS=Parietaria
judaica PE=1 SV=1
Length = 133
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 23/48 (47%)
Query: 22 TSAGFVRSDFNKGRKGCGDQLADFSACLPFVGGKAKSPSPTCCSSITK 69
TS+ + S G CG + CL FV G+ K PS +CCS K
Sbjct: 19 TSSAELASAPAPGEGPCGKVVHHIMPCLKFVKGEEKEPSKSCCSGTKK 66
>sp|P10974|NLTPB_RICCO Non-specific lipid-transfer protein B OS=Ricinus communis PE=1 SV=1
Length = 92
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 10/91 (10%)
Query: 38 CGDQLADFSACLPFVGGKAKSPSPTCCSSITKEGSKTRKCLCLLVKDRNEPRHGFKMNAT 97
CG S+C+PF+ G +PS TCC+ + + K L VKD+ R + T
Sbjct: 3 CGQVNKALSSCVPFLTGFDTTPSLTCCAGVME-----LKRLAPTVKDK---RIACECVKT 54
Query: 98 LALSLPSVRHAPATV--SDCPALLNLPPNST 126
A P++R A+ C ++N+P + T
Sbjct: 55 AAARYPNIREDAASSLPYKCGVVINVPISKT 85
>sp|Q43193|NLTP1_SORBI Non-specific lipid-transfer protein 1 OS=Sorghum bicolor GN=LTP1
PE=3 SV=1
Length = 118
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 16/90 (17%)
Query: 38 CGDQLADFSACLPFVGGKAKSPSPTCCSSITKEGSKTR-------KCLCLLVKDRNEPRH 90
CG + + CL + G+ +PS CCS + S R C CL +N R
Sbjct: 29 CGQVSSAIALCLSYARGQGFAPSAGCCSGVRSLNSAARTTADRRAACNCL----KNAARG 84
Query: 91 GFKMNATLALSLP-----SVRHAPATVSDC 115
+NA A S+P SV + +T +DC
Sbjct: 85 ISGLNAGNAASIPSKCGVSVPYTISTSTDC 114
>sp|Q089N9|RL6_SHEFN 50S ribosomal protein L6 OS=Shewanella frigidimarina (strain NCIMB
400) GN=rplF PE=3 SV=1
Length = 177
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 91 GFKMNATLALSLPSVRHAPATVS-DCPALLNLPPNSTDAQVVEQLAANSGG 140
G ++ TL S P V PA V+ +CP+ + + D QVV Q+AA G
Sbjct: 100 GSDLDLTLGFSHPLVHKLPAGVTAECPSQTEIVLSGVDKQVVGQVAAEIRG 150
>sp|O94986|CE152_HUMAN Centrosomal protein of 152 kDa OS=Homo sapiens GN=CEP152 PE=1 SV=3
Length = 1654
Score = 31.2 bits (69), Expect = 2.3, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 39 GDQLADFSACLPFVGGKAKSPSPTCCSSITKEGSKTRKCLCLLVKDRNEPRHGFKM 94
G + SA PF+G PSP C ++ G C+ + +D NE R G K+
Sbjct: 1430 GSESLPHSAAYPFLGTLGNKPSPRCTPGPSESG-----CMHITFRDSNE-RLGLKV 1479
>sp|Q9ZQI8|NLTL2_ARATH Non-specific lipid-transfer protein-like protein At2g13820
OS=Arabidopsis thaliana GN=At2g13820 PE=1 SV=1
Length = 169
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 38 CGDQLADFSACLPFV--GGKAKSPSPTCCSSITKEGSKTRKCLCLLVKDRNEPRHGFKMN 95
C + + + CL FV G P TCCS + +CLC K N G ++
Sbjct: 27 CSSLILNMADCLSFVTSGSTVVKPEGTCCSGLKTVVRTGPECLCEAFK--NSGSLGLTLD 84
Query: 96 ATLALSLPSV 105
+ A SLPSV
Sbjct: 85 LSKAASLPSV 94
>sp|Q09165|DIG1_CAEEL Mesocentin OS=Caenorhabditis elegans GN=dig-1 PE=1 SV=2
Length = 13100
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 15/58 (25%)
Query: 59 PSPTCCSSITKEGSKTRKCLCLLVKDRNEPRHGFKMNATLALSLPSVRHAPATVSDCP 116
PSP+ C+ EG + C +V D N P +LP PATV +CP
Sbjct: 12923 PSPSSCNCQCSEGKAVLRATCEMVIDTNRP----------IATLP-----PATVDECP 12965
>sp|Q6LVA1|RL6_PHOPR 50S ribosomal protein L6 OS=Photobacterium profundum GN=rplF PE=3
SV=1
Length = 177
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 91 GFKMNATLALSLPSVRHAPATV-SDCPALLNLPPNSTDAQVVEQLAAN 137
G +N TL S P P V ++CP+ + TD QV+ Q+AA+
Sbjct: 100 GNTVNLTLGFSHPVAHELPTGVKAECPSQTEIVLTGTDKQVIGQVAAD 147
>sp|A3Q997|RL6_SHELP 50S ribosomal protein L6 OS=Shewanella loihica (strain ATCC
BAA-1088 / PV-4) GN=rplF PE=3 SV=1
Length = 176
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 91 GFKMNATLALSLPSVRHAPATVS-DCPALLNLPPNSTDAQVVEQLAANSGG 140
G ++ TL S P V P V+ +CP+ + STD Q+V Q+AA G
Sbjct: 99 GNGIDLTLGFSHPLVHQLPDGVTAECPSQTEIVLKSTDKQLVGQVAAEIRG 149
>sp|Q43194|NLTP2_SORBI Non-specific lipid-transfer protein 2 OS=Sorghum bicolor GN=LTP2
PE=3 SV=1
Length = 122
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 16/90 (17%)
Query: 38 CGDQLADFSACLPFVGGKAKSPSPTCCSSITKEGSKTR-------KCLCLLVKDRNEPRH 90
CG + CL + G+ PS CCS + S R C CL +N R
Sbjct: 33 CGQVSSAIGPCLSYARGQGSGPSAGCCSGVRSLNSAARTTADRRAACNCL----KNAARG 88
Query: 91 GFKMNATLALSLP-----SVRHAPATVSDC 115
+N A S+P S+ + +T +DC
Sbjct: 89 IRGLNVGKAASIPSKCGVSIPYTISTSTDC 118
>sp|P10973|NLTPA_RICCO Non-specific lipid-transfer protein A OS=Ricinus communis PE=1
SV=1
Length = 92
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 38 CGDQLADFSACLPFVGGKAKSPSPTCCSSI 67
CG + ++C+PF+ G SPS +CC+ +
Sbjct: 3 CGQVNSSLASCIPFLTGGVASPSASCCAGV 32
>sp|A0AT31|NLTP5_LENCU Non-specific lipid-transfer protein 5 OS=Lens culinaris PE=3 SV=1
Length = 116
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 26 FVRSDFNKGRKGCGDQLADFSACLPFVGGKAKSPSPTCCSSITK 69
+ + +G CG D S CL ++ G PSP CC + K
Sbjct: 16 MIVAPMAEGAISCGAVTGDLSPCLTYLTG-GPGPSPQCCGGVKK 58
>sp|A0AT29|NLTP2_LENCU Non-specific lipid-transfer protein 2 OS=Lens culinaris PE=1 SV=1
Length = 118
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 26 FVRSDFNKGRKGCGDQLADFSACLPFVGGKAKSPSPTCCSSITK 69
V + +G CG +D S CL ++ G PSP CC + K
Sbjct: 17 VVIAPMAEGAISCGAVTSDLSPCLTYLTG-GPGPSPQCCGGVKK 59
>sp|Q41073|NLTP_PINTA Non-specific lipid-transfer protein OS=Pinus taeda PE=2 SV=1
Length = 123
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 16/94 (17%)
Query: 13 KVLFTVFIVTSAGFVRSDFN-------KGRKGCGDQLADFSACLPFVGGKAKSPSPTCCS 65
K++ VF+V G V + N +G C ++ + C ++ G A +P+ TCC
Sbjct: 5 KMVEAVFVV---GLVVTMMNVWGAVPVEGAISCNQVVSAMTPCATYLIGNAATPAATCCP 61
Query: 66 SITKEGSKT-----RKCLCLLVKDRNEPRHGFKM 94
SI S+ R+ +C +K + + +G K+
Sbjct: 62 SIRGLDSQVKATPDRQAVCNCLKTQAK-SYGVKL 94
>sp|Q05772|A9_BRANA Tapetum-specific protein A9 OS=Brassica napus GN=A9 PE=2 SV=1
Length = 96
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 15/74 (20%)
Query: 12 TKVLFTVFIVTSA----GFVRSDFNKGRKGCGDQLADFSACLPFVGGKAKSPSP--TCCS 65
T +LF +F+ SA VR+ + C D L++ C P V A +P+P CC
Sbjct: 8 TTILFVMFLAMSALETVPMVRA------QQCLDNLSNMQVCAPLVLPGAVNPAPNSNCCI 61
Query: 66 SITKEGSKTRKCLC 79
++ + + C+C
Sbjct: 62 AL---QATNKDCIC 72
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.130 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,842,183
Number of Sequences: 539616
Number of extensions: 1939106
Number of successful extensions: 3860
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 3834
Number of HSP's gapped (non-prelim): 62
length of query: 147
length of database: 191,569,459
effective HSP length: 106
effective length of query: 41
effective length of database: 134,370,163
effective search space: 5509176683
effective search space used: 5509176683
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)