Query 043293
Match_columns 147
No_of_seqs 170 out of 1034
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 03:28:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043293.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043293hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01960 nsLTP1 nsLTP1: Non-spe 99.6 6.6E-16 1.4E-20 106.6 4.4 77 37-116 2-89 (89)
2 cd00010 AAI_LTSS AAI_LTSS: Alp 99.6 2.8E-15 6.1E-20 96.8 3.7 63 45-108 1-63 (63)
3 PF14368 LTP_2: Probable lipid 99.6 3.2E-16 7E-21 108.3 -0.8 77 33-115 17-96 (96)
4 cd04660 nsLTP_like nsLTP_like: 99.5 5.1E-15 1.1E-19 99.0 3.5 71 38-115 1-73 (73)
5 cd01959 nsLTP2 nsLTP2: Non-spe 99.5 2.3E-14 5.1E-19 94.4 3.0 61 43-111 4-64 (66)
6 smart00499 AAI Plant lipid tra 99.2 5E-11 1.1E-15 78.2 4.6 76 38-115 1-79 (79)
7 PF00234 Tryp_alpha_amyl: Prot 98.7 2.1E-10 4.6E-15 78.5 -5.6 70 43-115 13-90 (90)
8 PF14547 Hydrophob_seed: Hydro 95.7 0.0036 7.7E-08 43.2 0.4 75 38-115 2-84 (85)
9 cd01958 HPS_like HPS_like: Hyd 94.4 0.026 5.6E-07 38.9 1.8 72 37-111 3-80 (85)
10 PLN00214 putative protein; Pro 73.2 2.4 5.1E-05 30.8 1.7 70 9-84 7-83 (115)
11 cd00261 AAI_SS AAI_SS: Alpha-A 71.2 0.99 2.1E-05 31.6 -0.7 70 43-116 13-109 (110)
12 PF12393 Dr_adhesin: Dr family 33.4 40 0.00086 17.2 1.7 9 1-9 1-9 (21)
13 PF15284 PAGK: Phage-encoded v 32.6 36 0.00077 22.0 1.8 16 7-22 1-16 (61)
14 PF05617 Prolamin_like: Prolam 24.1 76 0.0016 20.0 2.3 24 54-80 23-46 (70)
No 1
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=99.60 E-value=6.6e-16 Score=106.60 Aligned_cols=77 Identities=29% Similarity=0.626 Sum_probs=60.9
Q ss_pred CchhhhcCccCchhhhcCCCCCCCHHhHHHHHhhcCC-----CCccccccccccCCCCCCCC-CCHHHHhhccCCCCCCC
Q 043293 37 GCGDQLADFSACLPFVGGKAKSPSPTCCSSITKEGSK-----TRKCLCLLVKDRNEPRHGFK-MNATLALSLPSVRHAPA 110 (147)
Q Consensus 37 ~C~~~~~~L~pCl~yltg~~~~Ps~~CC~~l~~l~~~-----~~~ClC~~l~~~~~~~~g~~-in~~~A~~LP~~Cgv~~ 110 (147)
+|..++..|.||++|++|.+..|++.||++++++++. +..|+|+.+++... ++. ||.++|++||++||++.
T Consensus 2 ~C~~v~~~l~~C~~y~~g~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~~---~~~~i~~~~a~~LP~~C~v~~ 78 (89)
T cd01960 2 SCGQVTSLLAPCLGYLTGGGPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAA---GISGLNPGRAAGLPGKCGVSI 78 (89)
T ss_pred CHHHHHhhHHhHHHHHhCCCCCCChHHhhhhHHHhhccCCCCchhhhhhccccccc---ccCCCCHHHHHhChHhcccCC
Confidence 6999999999999999987778999999999998754 23455555776432 333 99999999999999975
Q ss_pred --CCC---CCC
Q 043293 111 --TVS---DCP 116 (147)
Q Consensus 111 --~is---~C~ 116 (147)
+++ ||+
T Consensus 79 ~~~i~~~~dC~ 89 (89)
T cd01960 79 PYPISPSTDCS 89 (89)
T ss_pred CCCCCCCCCCC
Confidence 443 664
No 2
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=99.56 E-value=2.8e-15 Score=96.82 Aligned_cols=63 Identities=32% Similarity=0.618 Sum_probs=53.3
Q ss_pred ccCchhhhcCCCCCCCHHhHHHHHhhcCCCCccccccccccCCCCCCCCCCHHHHhhccCCCCC
Q 043293 45 FSACLPFVGGKAKSPSPTCCSSITKEGSKTRKCLCLLVKDRNEPRHGFKMNATLALSLPSVRHA 108 (147)
Q Consensus 45 L~pCl~yltg~~~~Ps~~CC~~l~~l~~~~~~ClC~~l~~~~~~~~g~~in~~~A~~LP~~Cgv 108 (147)
|.||++|++|++..|++.||++++++++.++.|+|+++++......+ .+|.++++.||++||+
T Consensus 1 L~~C~~y~~~~~~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~~~~~~-~~~~~~a~~LP~~Cgv 63 (63)
T cd00010 1 LAPCLSYLTGGATAPPSDCCSGLKSVVKSDPKCLCAALNGPGASLLG-LKNATRALALPAACGL 63 (63)
T ss_pred CcchHHHHcCCCCCCChHHHHHHHHHHhcChhhHHHHHcCccccccC-cccHHHHHhchHhcCC
Confidence 67999999987788999999999999988899999999885433223 1379999999999996
No 3
>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A.
Probab=99.56 E-value=3.2e-16 Score=108.26 Aligned_cols=77 Identities=32% Similarity=0.671 Sum_probs=48.7
Q ss_pred cCCCCchhhhcCccCc---hhhhcCCCCCCCHHhHHHHHhhcCCCCccccccccccCCCCCCCCCCHHHHhhccCCCCCC
Q 043293 33 KGRKGCGDQLADFSAC---LPFVGGKAKSPSPTCCSSITKEGSKTRKCLCLLVKDRNEPRHGFKMNATLALSLPSVRHAP 109 (147)
Q Consensus 33 ~~~~~C~~~~~~L~pC---l~yltg~~~~Ps~~CC~~l~~l~~~~~~ClC~~l~~~~~~~~g~~in~~~A~~LP~~Cgv~ 109 (147)
....+|.+ +|.+| +.|+++ +..|++.||++++++.+.+..|||+++++.. ..+++||.++++.||++||++
T Consensus 17 ~~~~~c~~---~l~~c~~~~~~~~~-~~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~--~~~~~in~~~a~~Lp~~Cg~~ 90 (96)
T PF14368_consen 17 ACCCSCAN---SLLPCCPCLCYVTG-GPAPSAACCSALKSVVQADPPCLCQLLNSPG--APGFGINVTRALALPAACGVP 90 (96)
T ss_dssp -BTTB-HC---CCCHH--HHHHHCC------HHHHHHHCC----HCCHHHCCCC-CC--HCHHCCTCHHHHHHHHHCTSS
T ss_pred CCcchhHH---HHhccccchhccCC-CCCCCHHHHHHHHHhccCCCCCHHHhcCccc--cccCCcCHHHHHHHHHHcCCC
Confidence 35567755 46665 788885 6789999999999998888999999998742 134459999999999999999
Q ss_pred CCCCCC
Q 043293 110 ATVSDC 115 (147)
Q Consensus 110 ~~is~C 115 (147)
.+.++|
T Consensus 91 ~~~~~C 96 (96)
T PF14368_consen 91 VPPSKC 96 (96)
T ss_dssp -S----
T ss_pred CCCCCC
Confidence 865666
No 4
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=99.53 E-value=5.1e-15 Score=98.99 Aligned_cols=71 Identities=27% Similarity=0.584 Sum_probs=56.3
Q ss_pred chhhhcCccCchhhhcCCC--CCCCHHhHHHHHhhcCCCCccccccccccCCCCCCCCCCHHHHhhccCCCCCCCCCCCC
Q 043293 38 CGDQLADFSACLPFVGGKA--KSPSPTCCSSITKEGSKTRKCLCLLVKDRNEPRHGFKMNATLALSLPSVRHAPATVSDC 115 (147)
Q Consensus 38 C~~~~~~L~pCl~yltg~~--~~Ps~~CC~~l~~l~~~~~~ClC~~l~~~~~~~~g~~in~~~A~~LP~~Cgv~~~is~C 115 (147)
|+..+..|.||++|+++++ ..|++.||++++++ +..|+|.+++. ..+. .||.++|++||++||++++.++|
T Consensus 1 C~~~~~~L~~C~~yl~~~~~~~~Ps~~CC~~vk~~---~~~C~C~~~~~---~~~~-~i~~~~a~~Lp~~Cgv~~p~~~C 73 (73)
T cd04660 1 CNMDLDLLAECQPYVTGPNPPPPPSRECCAALRRA---DLPCLCRYKTS---LVLQ-IIDPDKAVYLPAKCGLPLPPSSC 73 (73)
T ss_pred CCCCHHHHHHHHHHHcCCCCCCCCCHHHHHHHHcC---CcCCEeeccCC---Cccc-ccCHHHHHHHHHHcCCCCCCCCC
Confidence 5566678999999999755 46999999999985 45699987764 2233 39999999999999999844666
No 5
>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp
Probab=99.47 E-value=2.3e-14 Score=94.44 Aligned_cols=61 Identities=28% Similarity=0.606 Sum_probs=52.7
Q ss_pred cCccCchhhhcCCCCCCCHHhHHHHHhhcCCCCccccccccccCCCCCCCCCCHHHHhhccCCCCCCCC
Q 043293 43 ADFSACLPFVGGKAKSPSPTCCSSITKEGSKTRKCLCLLVKDRNEPRHGFKMNATLALSLPSVRHAPAT 111 (147)
Q Consensus 43 ~~L~pCl~yltg~~~~Ps~~CC~~l~~l~~~~~~ClC~~l~~~~~~~~g~~in~~~A~~LP~~Cgv~~~ 111 (147)
.+|.+|++|+++ +..||++||+.+|+ +..|||+|+++ +.++.+||.++|++||++||+++|
T Consensus 4 ~~L~~C~~ai~~-~~~Ps~~CC~~Lk~----~~~CLC~y~~~---p~l~~~i~~~~A~~l~~~Cgv~~P 64 (66)
T cd01959 4 TQLSPCLPAILG-GSPPSAACCAKLKE----QQSCLCQYAKN---PSLKQYVNSPNARKVLAACGVPYP 64 (66)
T ss_pred hhcccCHHHHhC-CCCCCHHHHHHHhc----CCCCeeeeecC---ccHHhhcCcHHHHHHHHHcCCCCC
Confidence 589999999997 46899999999997 34899999887 445556999999999999999874
No 6
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=99.15 E-value=5e-11 Score=78.18 Aligned_cols=76 Identities=32% Similarity=0.626 Sum_probs=58.4
Q ss_pred chhhhcCccCchhhhcCC--CCCCCHHhHHHHHhhcCCCCccccccccccCCCCCC-CCCCHHHHhhccCCCCCCCCCCC
Q 043293 38 CGDQLADFSACLPFVGGK--AKSPSPTCCSSITKEGSKTRKCLCLLVKDRNEPRHG-FKMNATLALSLPSVRHAPATVSD 114 (147)
Q Consensus 38 C~~~~~~L~pCl~yltg~--~~~Ps~~CC~~l~~l~~~~~~ClC~~l~~~~~~~~g-~~in~~~A~~LP~~Cgv~~~is~ 114 (147)
|...+..+.+|++|+++. ...|+..||++++.+. +..|+|.+++.......+ ..+|..++..||+.||+..+.+.
T Consensus 1 C~~~~~~~~~c~~~~~~~~~~~~p~~~CC~~l~~~~--~~~C~C~~~~~~~~~~~~~~~~~~~~a~~lp~~C~~~~~~~~ 78 (79)
T smart00499 1 CGQVLLQLAPCLSYLTGGSPGAPPSQQCCSQLRGLN--SAQCRCLALRAAVLGILEIPGVNAQNAASLPSACGVPPPYTD 78 (79)
T ss_pred ChhhhhhHHhhHHHHcCCCCCCCCchHHHHHHHHhc--ccCCcchhhhcccccccchhhhhHHHHHhhHHhcCCCCCCCC
Confidence 666777888999999976 4678999999999985 678999988764222110 02599999999999999875444
Q ss_pred C
Q 043293 115 C 115 (147)
Q Consensus 115 C 115 (147)
|
T Consensus 79 C 79 (79)
T smart00499 79 C 79 (79)
T ss_pred C
Confidence 4
No 7
>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]. The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....
Probab=98.70 E-value=2.1e-10 Score=78.51 Aligned_cols=70 Identities=26% Similarity=0.609 Sum_probs=54.2
Q ss_pred cCccCchhhhcCCCCCCCHHhHHHHHhhcCCCCccccccccccCCCCC--------CCCCCHHHHhhccCCCCCCCCCCC
Q 043293 43 ADFSACLPFVGGKAKSPSPTCCSSITKEGSKTRKCLCLLVKDRNEPRH--------GFKMNATLALSLPSVRHAPATVSD 114 (147)
Q Consensus 43 ~~L~pCl~yltg~~~~Ps~~CC~~l~~l~~~~~~ClC~~l~~~~~~~~--------g~~in~~~A~~LP~~Cgv~~~is~ 114 (147)
..|.+|..|+++....|+..||++|+++ +..|+|..|+....... ...++..+|..||+.||+..+..+
T Consensus 13 ~~l~~c~~~~~~~~~~~~~~CC~~L~~l---~~~C~C~~i~~~~~~~~~q~~~~~~~~~~~~~~a~~LP~~C~v~~~~~~ 89 (90)
T PF00234_consen 13 VRLSPCLPYLQGGCQQPSQQCCQQLRQL---DPQCRCEAIRQMVRQVIQQQQQGGQEMQIMAQRAQNLPSMCNVSPPYTD 89 (90)
T ss_dssp SHHHGGHHHHTTSSSHHHHHHHHHHHHH---HHHHHHHHHHHHHHHSHHCTSTCSHHHHHHHHHHHHHHHHTTSSSSSS-
T ss_pred ccccccHHHHhcccccchHHHhHHHHHH---hHHhhCHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHCCCCCCCCC
Confidence 4589999999986668999999999998 67999998876322210 024889999999999999875434
Q ss_pred C
Q 043293 115 C 115 (147)
Q Consensus 115 C 115 (147)
|
T Consensus 90 C 90 (90)
T PF00234_consen 90 C 90 (90)
T ss_dssp G
T ss_pred C
Confidence 4
No 8
>PF14547 Hydrophob_seed: Hydrophobic seed protein
Probab=95.67 E-value=0.0036 Score=43.20 Aligned_cols=75 Identities=24% Similarity=0.471 Sum_probs=49.0
Q ss_pred chhhhcCccCchhhhc----CCCCCCCHHhHHHHHhhcCCC-CccccccccccCCCCCC-CCCCHHHHh-hccCCCCCCC
Q 043293 38 CGDQLADFSACLPFVG----GKAKSPSPTCCSSITKEGSKT-RKCLCLLVKDRNEPRHG-FKMNATLAL-SLPSVRHAPA 110 (147)
Q Consensus 38 C~~~~~~L~pCl~ylt----g~~~~Ps~~CC~~l~~l~~~~-~~ClC~~l~~~~~~~~g-~~in~~~A~-~LP~~Cgv~~ 110 (147)
|.....+|.-|.+.+. ..+..+..+||.-++.+.+.+ ..|||..+|.. .+| +++|....+ .|-..||-..
T Consensus 2 CP~d~lkLgvC~~vL~l~~~~~g~~~~~~CC~li~gL~d~~AA~CLC~aika~---vlg~i~~~ipv~l~~lln~CGk~~ 78 (85)
T PF14547_consen 2 CPRDALKLGVCANVLGLVNLVIGNPPRQPCCSLIAGLADLDAAVCLCTAIKAN---VLGLINVNIPVALNLLLNACGKTV 78 (85)
T ss_pred CCCcchhhhhhhhhhhhhccccCCCCCCCcChHHhCcccchHHHHHHHHHhhh---cccccccccccHHHHHHHHhCCcC
Confidence 4444457778888872 113346789999999998764 67999888763 355 444444343 5677798876
Q ss_pred CC-CCC
Q 043293 111 TV-SDC 115 (147)
Q Consensus 111 ~i-s~C 115 (147)
|. .+|
T Consensus 79 p~gf~C 84 (85)
T PF14547_consen 79 PSGFTC 84 (85)
T ss_pred cCCCcC
Confidence 43 355
No 9
>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins. In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset
Probab=94.42 E-value=0.026 Score=38.93 Aligned_cols=72 Identities=22% Similarity=0.401 Sum_probs=47.8
Q ss_pred CchhhhcCccCchhhhcCC----CCCCCHHhHHHHHhhcCCC-CccccccccccCCCCCCCCCCHHHHhh-ccCCCCCCC
Q 043293 37 GCGDQLADFSACLPFVGGK----AKSPSPTCCSSITKEGSKT-RKCLCLLVKDRNEPRHGFKMNATLALS-LPSVRHAPA 110 (147)
Q Consensus 37 ~C~~~~~~L~pCl~yltg~----~~~Ps~~CC~~l~~l~~~~-~~ClC~~l~~~~~~~~g~~in~~~A~~-LP~~Cgv~~ 110 (147)
.|-....+|--|..-+..- +..|..+||.-++.+.+.+ ..|+|..+|. ..+|+++|....+. |-..||-..
T Consensus 3 ~CP~dalkLgvCanvL~l~~~~~g~~~~~~CC~ll~GL~dldAA~CLCtaika---n~lgi~~~~pv~l~llln~CGk~~ 79 (85)
T cd01958 3 TCPRDALKLGVCANVLGLSLLLLGTPAVQPCCPLIGGLADLDAAVCLCTAIKA---NILGISINIPVALSLLLNSCGRNV 79 (85)
T ss_pred CCCcchHHhchhHhhhhccccccCCCccchHHHHHcCchhhheeeeeeeeeec---cccCcccccChhHHHHHHHHcCcC
Confidence 3554445677777766421 3457789999999997764 6799988886 34676555555553 345688765
Q ss_pred C
Q 043293 111 T 111 (147)
Q Consensus 111 ~ 111 (147)
|
T Consensus 80 P 80 (85)
T cd01958 80 P 80 (85)
T ss_pred C
Confidence 4
No 10
>PLN00214 putative protein; Provisional
Probab=73.19 E-value=2.4 Score=30.77 Aligned_cols=70 Identities=16% Similarity=0.342 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHhcccccccccCCC---CchhhhcCccC-chhhhcC---CCCCCCHHhHHHHHhhcCCCCcccccc
Q 043293 9 HVNTKVLFTVFIVTSAGFVRSDFNKGRK---GCGDQLADFSA-CLPFVGG---KAKSPSPTCCSSITKEGSKTRKCLCLL 81 (147)
Q Consensus 9 ~~~~~~~~~~~~~ll~~~~~~~~a~~~~---~C~~~~~~L~p-Cl~yltg---~~~~Ps~~CC~~l~~l~~~~~~ClC~~ 81 (147)
++++++++..|++..+-.-..+.+++.. +|.. .+.+ |..-+.. ...+++..||..+-+.. ..|.=.+
T Consensus 7 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~C~~---Kmt~KCa~EI~a~i~~N~t~s~~CC~~LVk~G---K~CH~~L 80 (115)
T PLN00214 7 QITTLFIVVALVCAFVPVFSVEEAEAKSLWNTCLV---KITPKCALDIIAVVFENGTLIDPCCNDLVKEG---KVCHDTL 80 (115)
T ss_pred chhHHHHHHHHHHhcccccchhhhHHHHHHHHHHh---hccHhhHHHHHHHHHcCCCCchHHHHHHHHHh---hHHHHHH
Confidence 4566666666544433222222233322 3443 3334 7654431 13467999999977653 5777666
Q ss_pred ccc
Q 043293 82 VKD 84 (147)
Q Consensus 82 l~~ 84 (147)
++-
T Consensus 81 iK~ 83 (115)
T PLN00214 81 IKY 83 (115)
T ss_pred HHH
Confidence 554
No 11
>cd00261 AAI_SS AAI_SS: Alpha-Amylase Inhibitors (AAIs) and Seed Storage (SS) Protein subfamily; composed of cereal-type AAIs and SS proteins. They are mainly present in the seeds of a variety of plants. AAIs play an important role in the natural defenses of plants against insects and pathogens such as fungi, bacteria and viruses. AAIs impede the digestion of plant starch and proteins by inhibiting digestive alpha-amylases and proteinases. Also included in this subfamily are SS proteins such as 2S albumin, gamma-gliadin, napin, and prolamin. These AAIs and SS proteins are also known allergens in humans.
Probab=71.17 E-value=0.99 Score=31.57 Aligned_cols=70 Identities=17% Similarity=0.404 Sum_probs=43.8
Q ss_pred cCccCchhhhcCC---CC-----------CCCHHhHHHHHhhcCCCCccccccccccCCCCC-----------C--CCCC
Q 043293 43 ADFSACLPFVGGK---AK-----------SPSPTCCSSITKEGSKTRKCLCLLVKDRNEPRH-----------G--FKMN 95 (147)
Q Consensus 43 ~~L~pCl~yltg~---~~-----------~Ps~~CC~~l~~l~~~~~~ClC~~l~~~~~~~~-----------g--~~in 95 (147)
..|.+|..|+.-. .. .....||..++.+ ...|.|..|........ + ...-
T Consensus 13 ~~L~~C~~yl~qq~~~~~~~~~~~~~~~~~~~qqCCqqL~~i---~~qcrC~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (110)
T cd00261 13 QPLNSCREYLRQQCSGVGGPPVWPQQSCEVLRQQCCQQLAQI---PEQCRCEALRQMVQGVIQQQQQQQEQQQGQEVERM 89 (110)
T ss_pred ccCcHHHHHHHHhccCCCCCCCcCccccHHHHHHHHHHHHhC---cHhhhHHHHHHHHHHHHHhhhccccccCcChHHHH
Confidence 3578999998621 11 1136799999986 46899998864211100 0 0123
Q ss_pred HHHHhhccCCCCCCCCCCCCC
Q 043293 96 ATLALSLPSVRHAPATVSDCP 116 (147)
Q Consensus 96 ~~~A~~LP~~Cgv~~~is~C~ 116 (147)
...|..||..||+.. ...|.
T Consensus 90 ~~~a~~Lp~~C~~~~-~~~C~ 109 (110)
T cd00261 90 RQAAQNLPSMCNLYP-PPYCP 109 (110)
T ss_pred HHHHHhhchhcCCCC-CCCCC
Confidence 457889999999975 23453
No 12
>PF12393 Dr_adhesin: Dr family adhesin ; InterPro: IPR021020 The Dr family of adhesins bind to the Dr blood group antigen component of decay-accelerating factor. These proteins contain both fimbriated and afimbriated adherence structures and mediate adherence of uropathogenic Escherichia coli to the urinary tract []. They also confer the mannose-resistant hemagglutination phenotype, which can be inhibited by chloramphenicol. The N-terminal portion of the mature protein is thought to be responsible for chloramphenicol sensitivity []. This entry represents the signal peptide region necessary for protein secretion to the cell surface.
Probab=33.42 E-value=40 Score=17.22 Aligned_cols=9 Identities=33% Similarity=0.364 Sum_probs=5.0
Q ss_pred CccchhhHH
Q 043293 1 MEKVASTVH 9 (147)
Q Consensus 1 ~~~~~~~~~ 9 (147)
|.|+|+|..
T Consensus 1 MKklaiMaa 9 (21)
T PF12393_consen 1 MKKLAIMAA 9 (21)
T ss_pred CchHHHHHH
Confidence 556665543
No 13
>PF15284 PAGK: Phage-encoded virulence factor
Probab=32.56 E-value=36 Score=22.03 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=8.6
Q ss_pred hHHHHHHHHHHHHHHH
Q 043293 7 TVHVNTKVLFTVFIVT 22 (147)
Q Consensus 7 ~~~~~~~~~~~~~~~l 22 (147)
|++++-+++.++|++.
T Consensus 1 Mkk~ksifL~l~~~Ls 16 (61)
T PF15284_consen 1 MKKFKSIFLALVFILS 16 (61)
T ss_pred ChHHHHHHHHHHHHHH
Confidence 5566665555554333
No 14
>PF05617 Prolamin_like: Prolamin-like; InterPro: IPR008502 This entry consists of several proteins of unknown function found exclusively in Arabidopsis thaliana.
Probab=24.14 E-value=76 Score=20.02 Aligned_cols=24 Identities=38% Similarity=0.852 Sum_probs=18.2
Q ss_pred CCCCCCCHHhHHHHHhhcCCCCccccc
Q 043293 54 GKAKSPSPTCCSSITKEGSKTRKCLCL 80 (147)
Q Consensus 54 g~~~~Ps~~CC~~l~~l~~~~~~ClC~ 80 (147)
|+....+.+||.++..+. ..|.=.
T Consensus 23 g~~~~i~~~CC~~i~~~g---~~C~~~ 46 (70)
T PF05617_consen 23 GNKKNIGPECCKAINKMG---KDCHPA 46 (70)
T ss_pred CCCCCCChHHHHHHHHHh---HhHHHH
Confidence 543688999999999874 467765
Done!