BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043295
(223 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HFJ|A Chain A, X-ray Crystal Structure Of A Double Bond Reductase From
Nicotiana Tabacum
pdb|4HFJ|B Chain B, X-ray Crystal Structure Of A Double Bond Reductase From
Nicotiana Tabacum
pdb|4HFM|A Chain A, X-ray Crystal Structure Of A Nadp(h)-bound Double Bond
Reductase From Nicotiana Tabacum
pdb|4HFM|B Chain B, X-ray Crystal Structure Of A Nadp(h)-bound Double Bond
Reductase From Nicotiana Tabacum
pdb|4HFN|A Chain A, X-ray Crystal Structure Of A Ternary Complex Of Double
Bond Reductase From Nicotiana Tabacum
pdb|4HFN|B Chain B, X-ray Crystal Structure Of A Ternary Complex Of Double
Bond Reductase From Nicotiana Tabacum
Length = 351
Score = 231 bits (588), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 110/209 (52%), Positives = 151/209 (72%), Gaps = 5/209 (2%)
Query: 20 GTSGFTAYVGFYEI--SQKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAIL 74
G G TAY GF+E+ +KGE VFVS GA G LVGQ+AK+ GCYVVGSAG+ EKV +L
Sbjct: 135 GMPGMTAYAGFHEVCSPKKGETVFVSAASGAVGQLVGQFAKMLGCYVVGSAGSKEKVDLL 194
Query: 75 KEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGV 134
K K GFD+AFNYKEE DL A LKRYFPDGID+YF+NVGG+ML+A + NM L+GR+A CG+
Sbjct: 195 KSKFGFDEAFNYKEEQDLSAALKRYFPDGIDIYFENVGGKMLDAVLVNMKLYGRIAVCGM 254
Query: 135 ISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQPLEDIS 194
IS+ V N+ ++ KRI+++GFL D++ L+ ++ M ++AGK+ +ED++
Sbjct: 255 ISQYNLEQTEGVHNLFCLITKRIRMEGFLVFDYYHLYPKYLEMVIPQIKAGKVVYVEDVA 314
Query: 195 NGVDSIPSAFTGFFRGDNIGKKFVRIAGE 223
+G++S P+A G F G NIGK+ V ++ E
Sbjct: 315 HGLESAPTALVGLFSGRNIGKQVVMVSRE 343
>pdb|2J3H|A Chain A, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Apo Form
pdb|2J3H|B Chain B, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Apo Form
pdb|2J3I|A Chain A, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Binary Complex
pdb|2J3I|B Chain B, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Binary Complex
pdb|2J3J|A Chain A, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Ternary Complex I
pdb|2J3J|B Chain B, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Ternary Complex I
pdb|2J3K|A Chain A, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Ternary Complex Ii
pdb|2J3K|B Chain B, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Ternary Complex Ii
Length = 345
Score = 227 bits (578), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 110/209 (52%), Positives = 149/209 (71%), Gaps = 5/209 (2%)
Query: 20 GTSGFTAYVGFYEI--SQKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAIL 74
G G TAY GFYE+ ++GE V+VS GA G LVGQ AK+ GCYVVGSAG+ EKV +L
Sbjct: 137 GMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLL 196
Query: 75 KEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGV 134
K K GFDDAFNYKEE+DL A LKR FP+GID+YF+NVGG+ML+A + NMN+ GR+A CG+
Sbjct: 197 KTKFGFDDAFNYKEESDLTAALKRCFPNGIDIYFENVGGKMLDAVLVNMNMHGRIAVCGM 256
Query: 135 ISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQPLEDIS 194
IS+ ++ V N+ +I+YKR +IQGF+ +D +D + F+ +R GKI +ED++
Sbjct: 257 ISQYNLENQEGVHNLSNIIYKRNRIQGFVVSDFYDKYSKFLEFVLPHIREGKITYVEDVA 316
Query: 195 NGVDSIPSAFTGFFRGDNIGKKFVRIAGE 223
+G++ P A G F G N+GK+ V +A E
Sbjct: 317 DGLEKAPEALVGLFHGKNVGKQVVVVARE 345
>pdb|1V3T|A Chain A, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
pdb|1V3T|B Chain B, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
pdb|1V3U|A Chain A, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase In
Apo Form
pdb|1V3U|B Chain B, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase In
Apo Form
pdb|1V3V|A Chain A, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
Complexed With Nadp And 15-Oxo-Pge2
pdb|1V3V|B Chain B, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
Complexed With Nadp And 15-Oxo-Pge2
pdb|2DM6|A Chain A, Crystal Structure Of Anti-Configuration Of Indomethacin
And Leukotriene B4 12-Hydroxydehydrogenase15-Oxo-
Prostaglandin 13-Reductase Complex
pdb|2DM6|B Chain B, Crystal Structure Of Anti-Configuration Of Indomethacin
And Leukotriene B4 12-Hydroxydehydrogenase15-Oxo-
Prostaglandin 13-Reductase Complex
Length = 333
Score = 148 bits (373), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 87/206 (42%), Positives = 121/206 (58%), Gaps = 8/206 (3%)
Query: 20 GTSGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAIL 74
G G TAY G E+ + GE V VS GA G +VGQ AKL GC VVG+AG++EK+A L
Sbjct: 127 GMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYL 186
Query: 75 KEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGV 134
K+ +GFD AFNYK L+ LK+ PDG D YFDNVGGE L ++ M FG++A CG
Sbjct: 187 KQ-IGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGGEFLNTVLSQMKDFGKIAICGA 245
Query: 135 ISECADASKRAV-PNMIDIVYKRIKIQGFLSTD-HFDLHQDFISMTCDALRAGKIQPLED 192
IS + P+ I+YK+++I+GF+ D+ + + + GKIQ E
Sbjct: 246 ISVYNRMDQLPPGPSPESIIYKQLRIEGFIVYRWQGDVREKALRDLMKWVLEGKIQYHEH 305
Query: 193 ISNGVDSIPSAFTGFFRGDNIGKKFV 218
++ G +++P+AF G N+GK V
Sbjct: 306 VTKGFENMPAAFIEMLNGANLGKAVV 331
>pdb|2Y05|A Chain A, Crystal Structure Of Human Leukotriene B4
12-Hydroxydehydrogenase In Complex With Nadp And
Raloxifene
pdb|2Y05|B Chain B, Crystal Structure Of Human Leukotriene B4
12-Hydroxydehydrogenase In Complex With Nadp And
Raloxifene
pdb|2Y05|C Chain C, Crystal Structure Of Human Leukotriene B4
12-Hydroxydehydrogenase In Complex With Nadp And
Raloxifene
pdb|2Y05|D Chain D, Crystal Structure Of Human Leukotriene B4
12-Hydroxydehydrogenase In Complex With Nadp And
Raloxifene
Length = 328
Score = 147 bits (370), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 89/207 (42%), Positives = 116/207 (56%), Gaps = 8/207 (3%)
Query: 20 GTSGFTAYVGFYEIS--QKGEKVFV---SGAYGHLVGQYAKLGGCYVVGSAGTNEKVAIL 74
G G TAY G EI + GE V V +GA G +VGQ AKL GC VVG+ G++EKVA L
Sbjct: 122 GMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAVGSDEKVAYL 181
Query: 75 KEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGV 134
+KLGFD FNYK L+ TLK+ PDG D YFDNVGGE + M FGR+A CG
Sbjct: 182 -QKLGFDVVFNYKTVESLEETLKKASPDGYDCYFDNVGGEFSNTVIGQMKKFGRIAICGA 240
Query: 135 ISECADASKRAVPNMIDIV-YKRIKIQGFLSTD-HFDLHQDFISMTCDALRAGKIQPLED 192
IS +IV Y+ ++++ F+ D Q + + GKIQ E
Sbjct: 241 ISTYNRTGPLPPGPPPEIVIYQELRMEAFVVYRWQGDARQKALKDLLKWVLEGKIQYKEY 300
Query: 193 ISNGVDSIPSAFTGFFRGDNIGKKFVR 219
I G +++P+AF G +GDN+GK V+
Sbjct: 301 IIEGFENMPAAFMGMLKGDNLGKTIVK 327
>pdb|1ZSV|A Chain A, Crystal Structure Of Human Nadp-Dependent Leukotriene B4
12- Hydroxydehydrogenase
pdb|1ZSV|B Chain B, Crystal Structure Of Human Nadp-Dependent Leukotriene B4
12- Hydroxydehydrogenase
pdb|1ZSV|C Chain C, Crystal Structure Of Human Nadp-Dependent Leukotriene B4
12- Hydroxydehydrogenase
pdb|1ZSV|D Chain D, Crystal Structure Of Human Nadp-Dependent Leukotriene B4
12- Hydroxydehydrogenase
Length = 349
Score = 146 bits (369), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 89/207 (42%), Positives = 116/207 (56%), Gaps = 8/207 (3%)
Query: 20 GTSGFTAYVGFYEIS--QKGEKVFV---SGAYGHLVGQYAKLGGCYVVGSAGTNEKVAIL 74
G G TAY G EI + GE V V +GA G +VGQ AKL GC VVG+ G++EKVA L
Sbjct: 143 GMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAVGSDEKVAYL 202
Query: 75 KEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGV 134
+KLGFD FNYK L+ TLK+ PDG D YFDNVGGE + M FGR+A CG
Sbjct: 203 -QKLGFDVVFNYKTVESLEETLKKASPDGYDCYFDNVGGEFSNTVIGQMKKFGRIAICGA 261
Query: 135 ISECADASKRAVPNMIDIV-YKRIKIQGFLSTD-HFDLHQDFISMTCDALRAGKIQPLED 192
IS +IV Y+ ++++ F+ D Q + + GKIQ E
Sbjct: 262 ISTYNRTGPLPPGPPPEIVIYQELRMEAFVVYRWQGDARQKALKDLLKWVLEGKIQYKEY 321
Query: 193 ISNGVDSIPSAFTGFFRGDNIGKKFVR 219
I G +++P+AF G +GDN+GK V+
Sbjct: 322 IIEGFENMPAAFMGMLKGDNLGKTIVK 348
>pdb|4B7C|A Chain A, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|B Chain B, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|C Chain C, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|D Chain D, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|E Chain E, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|F Chain F, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|G Chain G, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|H Chain H, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|I Chain I, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|J Chain J, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|K Chain K, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|L Chain L, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|A Chain A, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|B Chain B, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|C Chain C, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|D Chain D, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|E Chain E, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|F Chain F, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|G Chain G, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|H Chain H, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|I Chain I, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|J Chain J, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|K Chain K, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|L Chain L, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa
Length = 336
Score = 139 bits (349), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/221 (36%), Positives = 117/221 (52%), Gaps = 7/221 (3%)
Query: 6 EESHRSCYVFANGAGTSGFTAYVGFYEISQK--GEKVFVSGA---YGHLVGQYAKLGGCY 60
+ S + + G +G TAY ++ Q GE V +SGA G + GQ A+L GC
Sbjct: 117 DPSRAPLPRYLSALGMTGMTAYFALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGCR 176
Query: 61 VVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAV 120
VVG AG EK L E+LGFD A +YK E DL A LKR P GIDV+FDNVGGE+L+ +
Sbjct: 177 VVGIAGGAEKCRFLVEELGFDGAIDYKNE-DLAAGLKRECPKGIDVFFDNVGGEILDTVL 235
Query: 121 ANMNLFGRVAACGVISECADASK-RAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTC 179
+ R+ CG IS+ + R N + ++ R +++G + D+ + +
Sbjct: 236 TRIAFKARIVLCGAISQYNNKEAVRGPANYLSLLVNRARMEGMVVMDYAQRFPEGLKEMA 295
Query: 180 DALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRI 220
L GK+Q EDI G+++ P F G+N GK +++
Sbjct: 296 TWLAEGKLQSREDIVEGLETFPETLLKLFSGENFGKLVLKV 336
>pdb|2ZB4|A Chain A, Crystal Structure Of Human 15-Ketoprostaglandin Delta-13-
Reductase In Complex With Nadp And 15-Keto-Pge2
pdb|2ZB7|A Chain A, Crystal Structure Of Human 15-Ketoprostaglandin Delta-13-
Reductase In Complex With Nadph And Nicotinamide
pdb|2ZB8|A Chain A, Crystal Structure Of Human 15-Ketoprostaglandin Delta-13-
Reductase In Complex With Nadp And Indomethacin
Length = 357
Score = 105 bits (261), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 110/221 (49%), Gaps = 13/221 (5%)
Query: 15 FANGAGTSGFTAYVGFYE---ISQKGEKVFV----SGAYGHLVGQYAKLGGC-YVVGSAG 66
F G G T+ +G E I+ K V +GA G + GQ GC VVG G
Sbjct: 135 FLGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICG 194
Query: 67 TNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLF 126
T+EK +L +LGFD A NYK++ ++ L+ P G+DVYFDNVGG + + ++ MN
Sbjct: 195 THEKCILLTSELGFDAAINYKKD-NVAEQLRESCPAGVDVYFDNVGGNISDTVISQMNEN 253
Query: 127 GRVAACGVISECADASKRAVP--NMIDIVYKRIKI--QGFLSTDHFDLHQDFISMTCDAL 182
+ CG IS+ P I+ + K I + FL ++ D + I
Sbjct: 254 SHIILCGQISQYNKDVPYPPPLSPAIEAIQKERNITRERFLVLNYKDKFEPGILQLSQWF 313
Query: 183 RAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRIAGE 223
+ GK++ E + NG++++ +AF G NIGK+ V I+ E
Sbjct: 314 KEGKLKIKETVINGLENMGAAFQSMMTGGNIGKQIVCISEE 354
>pdb|2W4Q|A Chain A, Crystal Structure Of Human Zinc-Binding Alcohol
Dehydrogenase 1 (Zadh1) In Ternary Complex With Nadp And
18beta-Glycyrrhetinic Acid
pdb|2VNA|A Chain A, Structure Of Human Zinc-Binding Alcohol Dehydrogenase 1 (
Zadh1)
pdb|2W98|A Chain A, Crystal Structure Of Human Zinc-Binding Alcohol
Dehydrogenase 1 (Zadh1) In Ternary Complex With Nadp And
Phenylbutazone
pdb|2W98|B Chain B, Crystal Structure Of Human Zinc-Binding Alcohol
Dehydrogenase 1 (Zadh1) In Ternary Complex With Nadp And
Phenylbutazone
Length = 357
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 110/221 (49%), Gaps = 13/221 (5%)
Query: 15 FANGAGTSGFTAYVGFYE---ISQKGEKVFV----SGAYGHLVGQYAKLGGC-YVVGSAG 66
F G G T+ +G E I+ K V +GA G + GQ GC VVG G
Sbjct: 130 FLGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICG 189
Query: 67 TNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLF 126
T+EK +L +LGFD A NYK++ ++ L+ P G+DVYFDNVGG + + ++ MN
Sbjct: 190 THEKCILLTSELGFDAAINYKKD-NVAEQLRESCPAGVDVYFDNVGGNISDTVISQMNEN 248
Query: 127 GRVAACGVISECADASKRAVP--NMIDIVYKRIKI--QGFLSTDHFDLHQDFISMTCDAL 182
+ CG IS+ P I+ + K I + FL ++ D + I
Sbjct: 249 SHIILCGQISQYNKDVPYPPPLSPAIEAIQKERNITRERFLVLNYKDKFEPGILQLSQWF 308
Query: 183 RAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRIAGE 223
+ GK++ E + NG++++ +AF G NIGK+ V I+ E
Sbjct: 309 KEGKLKIKETVINGLENMGAAFQSMMTGGNIGKQIVCISEE 349
>pdb|2ZB3|A Chain A, Crystal Structure Of Mouse 15-Ketoprostaglandin Delta-13-
Reductase In Complex With Nadph
Length = 353
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 108/219 (49%), Gaps = 13/219 (5%)
Query: 15 FANGAGTSGFTAYVGFYE---ISQKGEKVFV----SGAYGHLVGQYAKLGGC-YVVGSAG 66
F G G T+ +G E IS + V +GA G L GQ L GC VVG G
Sbjct: 131 FLGAIGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICG 190
Query: 67 TNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLF 126
T EK L +LGFD A NYK ++ L+ P G+DVYFDNVGG++ A ++ MN
Sbjct: 191 TQEKCLFLTSELGFDAAVNYKT-GNVAEQLREACPGGVDVYFDNVGGDISNAVISQMNEN 249
Query: 127 GRVAACGVISECAD--ASKRAVPNMIDIVYKRIKI--QGFLSTDHFDLHQDFISMTCDAL 182
+ CG IS+ ++ +P ++ + K I + F ++ D + I
Sbjct: 250 SHIILCGQISQYSNDVPYPPPLPPAVEAIRKERNITRERFTVLNYKDKFEPGILQLSQWF 309
Query: 183 RAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRIA 221
+ GK++ E ++ G++++ AF G N+GK+ V I+
Sbjct: 310 KEGKLKVKETMAKGLENMGVAFQSMMTGGNVGKQIVCIS 348
>pdb|1VJ1|A Chain A, Crystal Structure Of Putative Nadph-Dependent
Oxidoreductase From Mus Musculus At 2.10 A Resolution
Length = 363
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 102/224 (45%), Gaps = 23/224 (10%)
Query: 15 FANGAGTSGFTAYVGFYE---ISQKGEKVFV----SGAYGHLVGQYAKLGGC-YVVGSAG 66
F G G T+ +G E IS + V +GA G L GQ L GC VVG G
Sbjct: 141 FLGAIGXPGLTSLIGVQEKGHISAGSNQTXVVSGAAGACGSLAGQIGHLLGCSRVVGICG 200
Query: 67 TNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLF 126
T EK L +LGFD A NYK ++ L+ P G+DVYFDNVGG++ ++ N
Sbjct: 201 TQEKCLFLTSELGFDAAVNYKT-GNVAEQLREACPGGVDVYFDNVGGDISNTVISQXNEN 259
Query: 127 GRVAACGVISE---------CADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISM 177
+ CG IS+ + A+ +I +R F ++ D + I
Sbjct: 260 SHIILCGQISQYNKDVPYPPPLPPAVEAIRKERNITRER-----FTVLNYKDKFEPGILQ 314
Query: 178 TCDALRAGKIQPLEDISNGVDSIPSAFTGFFRGDNIGKKFVRIA 221
+ GK++ E ++ G+++ AF G N+GK+ V I+
Sbjct: 315 LSQWFKEGKLKVKETVAKGLENXGVAFQSXXTGGNVGKQIVCIS 358
>pdb|2X7H|A Chain A, Crystal Structure Of The Human Mgc45594 Gene Product In
Complex With Fenoprofen
pdb|2X7H|B Chain B, Crystal Structure Of The Human Mgc45594 Gene Product In
Complex With Fenoprofen
Length = 370
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 104/217 (47%), Gaps = 19/217 (8%)
Query: 22 SGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKE 76
SG TAY+ E+ +G+KV V+ G G Q +K C+V+G+ ++EK A LK
Sbjct: 155 SGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKS 214
Query: 77 KLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVIS 136
LG D NYK E + LK+ +P+G+DV +++VGG M + AV + GR+ G IS
Sbjct: 215 -LGCDRPINYKTE-PVGTVLKQEYPEGVDVVYESVGGAMFDLAVDALATKGRLIVIGFIS 272
Query: 137 ----ECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKI---QP 189
+ +A ++ K +QGF + +Q +S + +G +
Sbjct: 273 GYQTPTGLSPVKAGTLPAKLLKKSASVQGFFLNHYLSKYQAAMSHLLEMCVSGDLVCEVD 332
Query: 190 LEDIS-----NGVDSIPSAFTGFFRGDNIGKKFVRIA 221
L D+S G++SI A + G N GK V +
Sbjct: 333 LGDLSPEGRFTGLESIFRAVNYMYMGKNTGKIVVELP 369
>pdb|2C0C|A Chain A, Structure Of The Mgc45594 Gene Product
pdb|2C0C|B Chain B, Structure Of The Mgc45594 Gene Product
pdb|2X1H|A Chain A, Crystal Structure Of The Human Mgc45594 Gene Product In
Complex With Raloxifene
pdb|2X1H|B Chain B, Crystal Structure Of The Human Mgc45594 Gene Product In
Complex With Raloxifene
Length = 362
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 104/217 (47%), Gaps = 19/217 (8%)
Query: 22 SGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKE 76
SG TAY+ E+ +G+KV V+ G G Q +K C+V+G+ ++EK A LK
Sbjct: 147 SGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKS 206
Query: 77 KLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVIS 136
LG D NYK E + LK+ +P+G+DV +++VGG M + AV + GR+ G IS
Sbjct: 207 -LGCDRPINYKTE-PVGTVLKQEYPEGVDVVYESVGGAMFDLAVDALATKGRLIVIGFIS 264
Query: 137 ----ECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKI---QP 189
+ +A ++ K +QGF + +Q +S + +G +
Sbjct: 265 GYQTPTGLSPVKAGTLPAKLLKKSASVQGFFLNHYLSKYQAAMSHLLEMCVSGDLVCEVD 324
Query: 190 LEDIS-----NGVDSIPSAFTGFFRGDNIGKKFVRIA 221
L D+S G++SI A + G N GK V +
Sbjct: 325 LGDLSPEGRFTGLESIFRAVNYMYMGKNTGKIVVELP 361
>pdb|2WEK|A Chain A, Crystal Structure Of The Human Mgc45594 Gene Product In
Complex With Diclofenac
pdb|2WEK|B Chain B, Crystal Structure Of The Human Mgc45594 Gene Product In
Complex With Diclofenac
Length = 341
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 104/217 (47%), Gaps = 19/217 (8%)
Query: 22 SGFTAYVGFYEIS--QKGEKVFVS---GAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKE 76
SG TAY+ E+ +G+KV V+ G G Q +K C+V+G+ ++EK A LK
Sbjct: 126 SGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKS 185
Query: 77 KLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVIS 136
LG D NYK E + LK+ +P+G+DV +++VGG M + AV + GR+ G IS
Sbjct: 186 -LGCDRPINYKTE-PVGTVLKQEYPEGVDVVYESVGGAMFDLAVDALATKGRLIVIGFIS 243
Query: 137 ----ECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKI---QP 189
+ +A ++ K +QGF + +Q +S + +G +
Sbjct: 244 GYQTPTGLSPVKAGTLPAKLLKKSASVQGFFLNHYLSKYQAAMSHLLEMCVSGDLVCEVD 303
Query: 190 LEDIS-----NGVDSIPSAFTGFFRGDNIGKKFVRIA 221
L D+S G++SI A + G N GK V +
Sbjct: 304 LGDLSPEGRFTGLESIFRAVNYMYMGKNTGKIVVELP 340
>pdb|3QWA|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
pdb|3QWA|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
pdb|3QWB|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
Complexed With Nadph
pdb|3QWB|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
Complexed With Nadph
pdb|3QWB|C Chain C, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
Complexed With Nadph
pdb|3QWB|D Chain D, Crystal Structure Of Saccharomyces Cerevisiae
Zeta-Crystallin-Like Quinone Oxidoreductase Zta1
Complexed With Nadph
Length = 334
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 81/181 (44%), Gaps = 13/181 (7%)
Query: 35 QKGEKVFV---SGAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETD 91
+KG+ V + +G G ++ Q K+ G + + A T+EK+ I KE G + N +E
Sbjct: 147 KKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKE-YGAEYLINASKEDI 205
Query: 92 LKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECAD--ASKRAVPNM 149
L+ LK G+D FD+VG + E ++A + G + G S + R P
Sbjct: 206 LRQVLKFTNGKGVDASFDSVGKDTFEISLAALKRKGVFVSFGNASGLIPPFSITRLSPKN 265
Query: 150 IDIVYKRIKIQGFLS-TDHFDLHQD----FISMTCDALRAGKIQPLEDISNGVDSIPSAF 204
I +V R ++ G+++ + + + D ++ ++ K PL D I S
Sbjct: 266 ITLV--RPQLYGYIADPEEWKYYSDEFFGLVNSKKLNIKIYKTYPLRDYRTAAADIESRK 323
Query: 205 T 205
T
Sbjct: 324 T 324
>pdb|1WLY|A Chain A, Crystal Structure Of 2-haloacrylate Reductase
Length = 333
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 6/135 (4%)
Query: 14 VFANGAGTSGFTAYVGFYEISQ--KGEKVFV---SGAYGHLVGQYAKLGGCYVVGSAGTN 68
V G G TA ++ + G+ V + +G GH++ +A+ G V+G+ T
Sbjct: 121 VHLAGLMLKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTE 180
Query: 69 EKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGR 128
EK A KLG NY + + + G+DV +D++G + L+ ++ + G
Sbjct: 181 EK-AETARKLGCHHTINYSTQDFAEVVREITGGKGVDVVYDSIGKDTLQKSLDCLRPRGM 239
Query: 129 VAACGVISECADASK 143
AA G S AD +
Sbjct: 240 CAAYGHASGVADPIR 254
>pdb|2OBY|A Chain A, Crystal Structure Of Human P53 Inducible Oxidoreductase
(Tp53i3,Pig3)
pdb|2OBY|B Chain B, Crystal Structure Of Human P53 Inducible Oxidoreductase
(Tp53i3,Pig3)
pdb|2OBY|C Chain C, Crystal Structure Of Human P53 Inducible Oxidoreductase
(Tp53i3,Pig3)
pdb|2OBY|D Chain D, Crystal Structure Of Human P53 Inducible Oxidoreductase
(Tp53i3,Pig3)
pdb|2OBY|E Chain E, Crystal Structure Of Human P53 Inducible Oxidoreductase
(Tp53i3,Pig3)
Length = 338
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 52 QYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNV 111
Q ++ G + +AG+ +K+ + EKLG FNYK+E +ATLK G+++ D +
Sbjct: 165 QLTRMAGAIPLVTAGSQKKLQ-MAEKLGAAAGFNYKKEDFSEATLKFTKGAGVNLILDCI 223
Query: 112 GGEMLEAAVANMNLFGRVAACGVI 135
GG E V + L GR G++
Sbjct: 224 GGSYWEKNVNCLALDGRWVLYGLM 247
>pdb|2J8Z|A Chain A, Crystal Structure Of Human P53 Inducible Oxidoreductase (
Tp53i3,Pig3)
Length = 354
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 52 QYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNV 111
Q ++ G + +AG+ +K+ + EKLG FNYK+E +ATLK G+++ D +
Sbjct: 181 QLTRMAGAIPLVTAGSQKKLQ-MAEKLGAAAGFNYKKEDFSEATLKFTKGAGVNLILDCI 239
Query: 112 GGEMLEAAVANMNLFGRVAACGVI 135
GG E V + L GR G++
Sbjct: 240 GGSYWEKNVNCLALDGRWVLYGLM 263
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 42.0 bits (97), Expect = 3e-04, Method: Composition-based stats.
Identities = 47/199 (23%), Positives = 79/199 (39%), Gaps = 15/199 (7%)
Query: 35 QKGEKVFV---SGAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETD 91
Q GE V + SG G A GC V + G+ EK A L+ + D + D
Sbjct: 1666 QPGESVLIHSGSGGVGQAAIAIALSRGCRVFTTVGSAEKRAYLQARFPQLDETCFANSRD 1725
Query: 92 L---KATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVPN 148
+ L+ G+D+ +++ E L+A+V + GR G D S
Sbjct: 1726 TSFEQHVLRHTAGKGVDLVLNSLAEEKLQASVRCLAQHGRFLEIGKF----DLSNNHALG 1781
Query: 149 MIDIVYKRIKIQGFLSTDHFD----LHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAF 204
M + K + G L F+ Q+ + ++ G +QPL+ + +AF
Sbjct: 1782 MA-VFLKNVTFHGILLDSLFEEGGATWQEVSELLKAGIQEGVVQPLKCTVFPRTKVEAAF 1840
Query: 205 TGFFRGDNIGKKFVRIAGE 223
+G +IGK +++ E
Sbjct: 1841 RYMAQGKHIGKVVIQVREE 1859
>pdb|1QOR|A Chain A, Crystal Structure Of Escherichia Coli Quinone
Oxidoreductase Complexed With Nadph
pdb|1QOR|B Chain B, Crystal Structure Of Escherichia Coli Quinone
Oxidoreductase Complexed With Nadph
Length = 327
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 6/139 (4%)
Query: 31 YEISQKGEKVF--VSGAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKE 88
YEI + +F +G G + Q+AK G ++G+ GT +K A K G NY+E
Sbjct: 136 YEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQK-AQSALKAGAWQVINYRE 194
Query: 89 ETDLKATLKRYF-PDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVISECADASKRAVP 147
E DL LK + V +D+VG + E ++ + G + + G S +
Sbjct: 195 E-DLVERLKEITGGKKVRVVYDSVGRDTWERSLDCLQRRGLMVSFGNSSGAVTGVNLGIL 253
Query: 148 NMIDIVY-KRIKIQGFLST 165
N +Y R +QG+++T
Sbjct: 254 NQKGSLYVTRPSLQGYITT 272
>pdb|1YB5|A Chain A, Crystal Structure Of Human Zeta-crystallin With Bound Nadp
pdb|1YB5|B Chain B, Crystal Structure Of Human Zeta-crystallin With Bound Nadp
Length = 351
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 8/126 (6%)
Query: 15 FANGA--GTSGFTAYVGFYEIS--QKGEKVFVSGAYGHL---VGQYAKLGGCYVVGSAGT 67
F GA G FTAY + + GE V V GA G + Q A+ G ++G+AGT
Sbjct: 145 FKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGT 204
Query: 68 NEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFG 127
E I+ + G + FN++E + K GID+ + + L ++ ++ G
Sbjct: 205 EEGQKIVLQN-GAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLANVNLSKDLSLLSHGG 263
Query: 128 RVAACG 133
RV G
Sbjct: 264 RVIVVG 269
>pdb|2VN8|A Chain A, Crystal Structure Of Human Reticulon 4 Interacting Protein
1 In Complex With Nadph
pdb|2VN8|B Chain B, Crystal Structure Of Human Reticulon 4 Interacting Protein
1 In Complex With Nadph
Length = 375
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 99/251 (39%), Gaps = 46/251 (18%)
Query: 1 MIVANEESHRSCYVFANGAGTSGFTAYVGFYEISQ---------KGEKVFV---SGAYGH 48
++ NE SH+ + A + + A + I++ G++V + SG G
Sbjct: 139 VVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLNDKNCTGKRVLILGASGGVGT 198
Query: 49 LVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYF 108
Q K +V +A ++ + L KLG DD +YK + ++ LK P D
Sbjct: 199 FAIQVMKAWDAHV--TAVCSQDASELVRKLGADDVIDYKSGS-VEEQLKSLKP--FDFIL 253
Query: 109 DNVGGE-------------------MLEAAVANMNLFGRVAACGVISECADASKRAVPNM 149
DNVGG ++ + NM+ G A G++ +A+ +
Sbjct: 254 DNVGGSTETWAPDFLKKWSGATYVTLVTPFLLNMDRLG--IADGMLQTGVTVGSKALKHF 311
Query: 150 IDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQPLEDISNGVDSIPSAFTGFFR 209
V+ R F+++ D I+ D AGKI+P+ + + +P AF R
Sbjct: 312 WKGVHYRWAF--FMASGPC---LDDIAELVD---AGKIRPVIEQTFPFSKVPEAFLKVER 363
Query: 210 GDNIGKKFVRI 220
G GK + +
Sbjct: 364 GHARGKTVINV 374
>pdb|1LLU|A Chain A, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|B Chain B, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|C Chain C, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|D Chain D, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|E Chain E, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|F Chain F, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|G Chain G, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
pdb|1LLU|H Chain H, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol
Dehydrogenase With Its Coenzyme And Weak Substrate
Length = 342
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 85/192 (44%), Gaps = 30/192 (15%)
Query: 22 SGFTAYVGFYEI-SQKGEKVFVSG--AYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL 78
+G T Y G + ++ G+ V +SG GH+ QYA+ G +V + K+ L KL
Sbjct: 155 AGVTVYKGLKQTNARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLE-LARKL 213
Query: 79 GFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGE--MLEAAVANMNLFGRVAACGVIS 136
G N ++E ++A + ++GG +L AV+N + FG+ A G+
Sbjct: 214 GASLTVNARQEDPVEAIQR------------DIGGAHGVLVTAVSN-SAFGQ--AIGMAR 258
Query: 137 ECADASKRAVP------NMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQP- 189
+ +P + D+V K + I G + DL Q+ + + L I P
Sbjct: 259 RGGTIALVGLPPGDFPTPIFDVVLKGLHIAGSIVGTRADL-QEALDFAGEGLVKATIHPG 317
Query: 190 -LEDISNGVDSI 200
L+DI+ +D +
Sbjct: 318 KLDDINQILDQM 329
>pdb|1XA0|A Chain A, Crystal Structure Of Mcsg Target Apc35536 From Bacillus
Stearothermophilus
pdb|1XA0|B Chain B, Crystal Structure Of Mcsg Target Apc35536 From Bacillus
Stearothermophilus
Length = 328
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 91/224 (40%), Gaps = 37/224 (16%)
Query: 16 ANGAGTSGFTAYVGFYEISQKGE-----KVFVSGAYGHL----VGQYAKLGGCYVV---- 62
A GT+GFTA + + + + G V V+GA G + V AK G Y V
Sbjct: 124 AXAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSXLAKRG--YTVEAST 181
Query: 63 GSAGTNEKVAIL--KEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAV 120
G A ++ + +L KE L +D + ++ K+ + + D VGG L +
Sbjct: 182 GKAAEHDYLRVLGAKEVLAREDVXAER----IRPLDKQRWAAAV----DPVGGRTLATVL 233
Query: 121 ANMNLFGRVAACGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCD 180
+ G VA G ++ A+ P ++ V L D D +
Sbjct: 234 SRXRYGGAVAVSG-LTGGAEVPTTVHPFILRGV-------SLLGIDSVYCPXDLRLRIWE 285
Query: 181 ALRAGKIQP-LEDISNGVD--SIPSAFTGFFRGDNIGKKFVRIA 221
L AG ++P LE I+ + +P A RG+ G+ VR+A
Sbjct: 286 RL-AGDLKPDLERIAQEISLAELPQALKRILRGELRGRTVVRLA 328
>pdb|3NX4|A Chain A, Crystal Structure Of The Yhdh Oxidoreductase From
Salmonella Enterica In Complex With Nadp
pdb|3NX4|B Chain B, Crystal Structure Of The Yhdh Oxidoreductase From
Salmonella Enterica In Complex With Nadp
Length = 324
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 67/153 (43%), Gaps = 24/153 (15%)
Query: 20 GTSGFTAYVGFYEI------SQKGEKVFVSGAYGHL----VGQYAKLGGCYVVGSAGTNE 69
GT+GFTA + + Q GE V V+GA G + V KLG Y V + E
Sbjct: 125 GTAGFTAXLCVXALEDAGIRPQDGE-VVVTGASGGVGSTAVALLHKLG--YQVAAVSGRE 181
Query: 70 KVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRV 129
+ LG + + E + + K+ + ID VG ++L +A N G V
Sbjct: 182 STHGYLKSLGANRILSRDEFAESRPLEKQLWAGAID----TVGDKVLAKVLAQXNYGGCV 237
Query: 130 AACGVISECADASKRAVPNMI-DIVYKRIKIQG 161
AACG+ A A+P + + + +++QG
Sbjct: 238 AACGL------AGGFALPTTVXPFILRNVRLQG 264
>pdb|1O89|A Chain A, Crystal Structure Of E. Coli K-12 Yhdh
pdb|1O8C|A Chain A, Crystal Structure Of E. Coli K-12 Yhdh With Bound Nadph
pdb|1O8C|B Chain B, Crystal Structure Of E. Coli K-12 Yhdh With Bound Nadph
pdb|1O8C|C Chain C, Crystal Structure Of E. Coli K-12 Yhdh With Bound Nadph
pdb|1O8C|D Chain D, Crystal Structure Of E. Coli K-12 Yhdh With Bound Nadph
Length = 345
Score = 34.3 bits (77), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 65/152 (42%), Gaps = 22/152 (14%)
Query: 20 GTSGFTAYVGFYEISQKGEK-----VFVSGAYGHL----VGQYAKLGGCYVVGSAGTNEK 70
GT+GFTA + + G + + V+GA G + V KLG VV +G
Sbjct: 146 GTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLG-YQVVAVSGREST 204
Query: 71 VAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVA 130
LK LG E + + K+ + ID VG ++L +A MN G VA
Sbjct: 205 HEYLK-SLGASRVLPRDEFAESRPLEKQVWAGAID----TVGDKVLAKVLAQMNYGGCVA 259
Query: 131 ACGVISECADASKRAVPNMI-DIVYKRIKIQG 161
ACG+ A +P + + + +++QG
Sbjct: 260 ACGL------AGGFTLPTTVMPFILRNVRLQG 285
>pdb|2EIH|A Chain A, Crystal Structure Of Nad-Dependent Alcohol Dehydrogenase
pdb|2EIH|B Chain B, Crystal Structure Of Nad-Dependent Alcohol Dehydrogenase
Length = 343
Score = 33.5 bits (75), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Query: 52 QYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNV 111
Q AKL G V+ +AG+ +K+ K LG D+ NY K + G D D+
Sbjct: 185 QIAKLFGARVIATAGSEDKLRRAK-ALGADETVNYTHPDWPKEVRRLTGGKGADKVVDHT 243
Query: 112 GGEMLEAAVANMNLFGRVAACGVIS 136
G E + GR+A G S
Sbjct: 244 GALYFEGVIKATANGGRIAIAGASS 268
>pdb|1LOS|A Chain A, Crystal Structure Of Orotidine Monophosphate Decarboxylase
Mutant Deltar203a Complexed With 6-Azaump
pdb|1LOS|B Chain B, Crystal Structure Of Orotidine Monophosphate Decarboxylase
Mutant Deltar203a Complexed With 6-Azaump
pdb|1LOS|C Chain C, Crystal Structure Of Orotidine Monophosphate Decarboxylase
Mutant Deltar203a Complexed With 6-Azaump
pdb|1LOS|D Chain D, Crystal Structure Of Orotidine Monophosphate Decarboxylase
Mutant Deltar203a Complexed With 6-Azaump
Length = 224
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 7 ESHRSCYVFANGAGTSGFTAYVGFYEISQKGEKVFVSGAYGHLVGQYAKLGGCYVVGSAG 66
+S R+C A G F E+S G ++F+ GA + LG VG +
Sbjct: 104 DSVRACLNVAEEMGREVFL----LTEMSHPGAEMFIQGAADEIARMGVDLGVKNYVGPST 159
Query: 67 TNEKVAILKEKLGFD 81
E+++ L+E +G D
Sbjct: 160 RPERLSRLREIIGQD 174
>pdb|3MAV|A Chain A, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
pdb|3MAV|B Chain B, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
pdb|3MAV|C Chain C, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
pdb|3MAV|D Chain D, Crystal Structure Of Plasmodium Vivax Putative Farnesyl
Pyrophosphate Synthase (Pv092040)
Length = 395
Score = 30.8 bits (68), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 145 AVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQPLEDISNGVDSIP 201
AV N+I YK+I+ L ++F +H D++ + D+ + GK+ DI N + P
Sbjct: 262 AVDNLI---YKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGKVGS--DIQNNKLTWP 313
>pdb|3CC9|A Chain A, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3CC9|B Chain B, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3CC9|C Chain C, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3CC9|D Chain D, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3EZ3|A Chain A, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3EZ3|B Chain B, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3EZ3|C Chain C, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3EZ3|D Chain D, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|A Chain A, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|B Chain B, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|C Chain C, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3LDW|D Chain D, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Pvx_092040 With
Zoledronate And Ipp Bound
pdb|3PH7|A Chain A, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3PH7|B Chain B, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3PH7|C Chain C, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3PH7|D Chain D, Crystal Structure Of Plasmodium Vivax Putative Polyprenyl
Pyrophosphate Synthase In Complex With Geranylgeranyl
Diphosphate
pdb|3RBM|A Chain A, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RBM|B Chain B, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RBM|C Chain C, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RBM|D Chain D, Crystal Structure Of Plasmodium Vivax
Geranylgeranylpyrophosphate Synthase Complexed With Bph
-703
pdb|3RYW|A Chain A, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
pdb|3RYW|B Chain B, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
pdb|3RYW|C Chain C, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
pdb|3RYW|D Chain D, Crystal Structure Of P. Vivax Geranylgeranyl Diphosphate
Synthase Complexed With Bph-811
Length = 396
Score = 30.8 bits (68), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 145 AVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQPLEDISNGVDSIP 201
AV N+I YK+I+ L ++F +H D++ + D+ + GK+ DI N + P
Sbjct: 263 AVDNLI---YKKIEDISMLMGEYFQIHDDYLDIFGDSTKTGKVGS--DIQNNKLTWP 314
>pdb|3PI7|A Chain A, Crystal Structure Of A Putative Nadph:quinone Reductase
(Mll3093) From Mesorhizobium Loti At 1.71 A Resolution
Length = 349
Score = 30.4 bits (67), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Query: 24 FTAYVGFYEISQKGEKVFVSGAYG----HLVGQYAKLGGCYVVGSAGTNEKVAILKEKLG 79
TA F + Q+GEK FV A L+ AK G + + +E++A+LK+ +G
Sbjct: 151 LTAIAXFDIVKQEGEKAFVXTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKD-IG 209
Query: 80 FDDAFNYKEETDLKATLKRYF-PDGIDVYFDNVGGEMLEA 118
N K D +ATL+ + ++ D V G + A
Sbjct: 210 AAHVLNEK-APDFEATLREVXKAEQPRIFLDAVTGPLASA 248
>pdb|1PQW|A Chain A, Putative Enoyl Reductase Domain Of Polyketide Synthase
pdb|1PQW|B Chain B, Putative Enoyl Reductase Domain Of Polyketide Synthase
Length = 198
Score = 30.0 bits (66), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 59/132 (44%), Gaps = 14/132 (10%)
Query: 20 GTSGFTAYVGFYEISQ--KGEKVFV---SGAYGHLVGQYAKLGGCYVVGSAGTNEKVAIL 74
G + TA+ E+ + GE+V + +G G AK+ G + +AG++ K +L
Sbjct: 20 GVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREML 79
Query: 75 K----EKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVA 130
E +G + ++ +E L+ G+DV +++ GE ++ V + GR
Sbjct: 80 SRLGVEYVGDSRSVDFADEI-----LELTDGYGVDVVLNSLAGEAIQRGVQILAPGGRFI 134
Query: 131 ACGVISECADAS 142
G ADAS
Sbjct: 135 ELGKKDVYADAS 146
>pdb|1H2B|A Chain A, Crystal Structure Of The Alcohol Dehydrogenase From The
Hyperthermophilic Archaeon Aeropyrum Pernix At 1.65a
Resolution
pdb|1H2B|B Chain B, Crystal Structure Of The Alcohol Dehydrogenase From The
Hyperthermophilic Archaeon Aeropyrum Pernix At 1.65a
Resolution
Length = 359
Score = 30.0 bits (66), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 83/204 (40%), Gaps = 28/204 (13%)
Query: 22 SGFTAYVGFYEISQKGEKVFVSGAY---------GHLVGQYAKLGGCYVVGSAGTNEKVA 72
+G TAY +K + GAY GH+ Q K+ V + E+
Sbjct: 169 AGITAYRAV----KKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKL 224
Query: 73 ILKEKLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGE-MLEAAVANMNLFGRVAA 131
L E+LG D + + + +K ++ G++V D VG + ++ + GR+
Sbjct: 225 KLAERLGADHVVDARRDP-VKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLGRMGRLII 283
Query: 132 CGVISECADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRAGKIQPLE 191
G E + R ++ + +G L ++ +LH+ + AL+ GK++
Sbjct: 284 VGYGGELRFPTIR-------VISSEVSFEGSLVGNYVELHE----LVTLALQ-GKVRVEV 331
Query: 192 DISNGVDSIPSAFTGFFRGDNIGK 215
DI +D I +G+ +G+
Sbjct: 332 DIHK-LDEINDVLERLEKGEVLGR 354
>pdb|3PII|A Chain A, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase
With Substrate Analogue Butyramide
pdb|3PII|C Chain C, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase
With Substrate Analogue Butyramide
pdb|3PII|B Chain B, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase
With Substrate Analogue Butyramide
pdb|3PII|D Chain D, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase
With Substrate Analogue Butyramide
Length = 339
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 75/184 (40%), Gaps = 14/184 (7%)
Query: 22 SGFTAYVGFYEISQK-GEKVFVSG--AYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL 78
+G T Y K GE V + G +GH+ QYAK G VV +EK+ + KE L
Sbjct: 149 AGVTTYKALKVTGAKPGEWVAIYGIGGFGHVAVQYAKAMGLNVVAVDIGDEKLELAKE-L 207
Query: 79 GFDDAFNYKEETDLKATLKRYFPDGI-DVYFDNVGGEMLEAAVANMNLFGRVAACGVISE 137
G D N LK ++ + + V+ V A + N R AC ++
Sbjct: 208 GADLVVN-----PLKEDAAKFMKEKVGGVHAAVVTAVSKPAFQSAYNSIRRGGACVLVG- 261
Query: 138 CADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRA-GKIQPLEDISNG 196
+ +P + D V IKI G + DL + ++ ++QPLE I+
Sbjct: 262 -LPPEEMPIP-IFDTVLNGIKIIGSIVGTRKDLQEALQFAAEGKVKTIIEVQPLEKINEV 319
Query: 197 VDSI 200
D +
Sbjct: 320 FDRM 323
>pdb|3GAZ|A Chain A, Crystal Structure Of An Alcohol Dehydrogenase Superfamily
Protein From Novosphingobium Aromaticivorans
pdb|3GAZ|B Chain B, Crystal Structure Of An Alcohol Dehydrogenase Superfamily
Protein From Novosphingobium Aromaticivorans
Length = 343
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 103 GIDVYFDNVGGEMLEAAVANMNLFGRVAAC 132
G D+ +D +GG +L+A+ + + FG V +C
Sbjct: 216 GFDLVYDTLGGPVLDASFSAVKRFGHVVSC 245
>pdb|1TT7|A Chain A, Crystal Structure Of Bacillus Subtilis Protein Yhfp
pdb|1TT7|B Chain B, Crystal Structure Of Bacillus Subtilis Protein Yhfp
pdb|1TT7|C Chain C, Crystal Structure Of Bacillus Subtilis Protein Yhfp
pdb|1TT7|D Chain D, Crystal Structure Of Bacillus Subtilis Protein Yhfp
pdb|1TT7|E Chain E, Crystal Structure Of Bacillus Subtilis Protein Yhfp
pdb|1TT7|F Chain F, Crystal Structure Of Bacillus Subtilis Protein Yhfp
pdb|1Y9E|A Chain A, Crystal Structure Of Bacillus Subtilis Protein Yhfp With
Nad Bound
pdb|1Y9E|B Chain B, Crystal Structure Of Bacillus Subtilis Protein Yhfp With
Nad Bound
pdb|1Y9E|C Chain C, Crystal Structure Of Bacillus Subtilis Protein Yhfp With
Nad Bound
pdb|1Y9E|D Chain D, Crystal Structure Of Bacillus Subtilis Protein Yhfp With
Nad Bound
pdb|1Y9E|E Chain E, Crystal Structure Of Bacillus Subtilis Protein Yhfp With
Nad Bound
pdb|1Y9E|F Chain F, Crystal Structure Of Bacillus Subtilis Protein Yhfp With
Nad Bound
Length = 330
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 15/125 (12%)
Query: 20 GTSGFTAYVGFYEISQ------KGEKVFVSGAYGHLVGQYAKLG--GCYVVGSAGTNEKV 71
GT+GFTA + + + Q KG + G + L G VV S G E
Sbjct: 129 GTAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSXLNKRGYDVVASTGNREAA 188
Query: 72 AILKEKLGFDDAFNYKEETD--LKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRV 129
LK+ LG + + ++ D LKA K+ + + D VGG+ L + ++ + G V
Sbjct: 189 DYLKQ-LGASEVISREDVYDGTLKALSKQQWQGAV----DPVGGKQLASLLSKIQYGGSV 243
Query: 130 AACGV 134
A G+
Sbjct: 244 AVSGL 248
>pdb|1IZ0|A Chain A, Crystal Structures Of The Quinone Oxidoreductase From
Thermus Thermophilus Hb8 And Its Complex With Nadph
Length = 302
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 65/150 (43%), Gaps = 16/150 (10%)
Query: 21 TSGFTAYVGFYEI-SQKGEKVFVSGAYGHLVG---QYAKLGGCYVVGSAGTNEKVAILKE 76
S TAY+ ++ GEKV V A G L Q A+ G V+ +A EK+A L
Sbjct: 109 VSFLTAYLALKRAQARPGEKVLVQAAAGALGTAAVQVARAXGLRVLAAASRPEKLA-LPL 167
Query: 77 KLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVIS 136
LG ++A Y E + G+D+ + V G+ +E ++ + GR+ G
Sbjct: 168 ALGAEEAATYAEVPERAKAW-----GGLDLVLE-VRGKEVEESLGLLAHGGRLVYIG--- 218
Query: 137 ECADASKRAVPNMIDIVYKRIKIQGFLSTD 166
A+ +P + + + + + GF T
Sbjct: 219 -AAEGEVAPIPPL-RLXRRNLAVLGFWLTP 246
>pdb|1IYZ|A Chain A, Crystal Structures Of The Quinone Oxidoreductase From
Thermus Thermophilus Hb8 And Its Complex With Nadph
Length = 302
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 16/150 (10%)
Query: 21 TSGFTAYVGFYEI-SQKGEKVFVSGAYGHLVG---QYAKLGGCYVVGSAGTNEKVAILKE 76
S TAY+ ++ GEKV V A G L Q A+ G V+ +A EK+A L
Sbjct: 109 VSFLTAYLALKRAQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLA-LPL 167
Query: 77 KLGFDDAFNYKEETDLKATLKRYFPDGIDVYFDNVGGEMLEAAVANMNLFGRVAACGVIS 136
LG ++A Y E + G+D+ + V G+ +E ++ + GR+ G
Sbjct: 168 ALGAEEAATYAEVPERAKAW-----GGLDLVLE-VRGKEVEESLGLLAHGGRLVYIG--- 218
Query: 137 ECADASKRAVPNMIDIVYKRIKIQGFLSTD 166
A+ +P + ++ + + + GF T
Sbjct: 219 -AAEGEVAPIPPL-RLMRRNLAVLGFWLTP 246
>pdb|1RJW|A Chain A, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
pdb|1RJW|B Chain B, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
pdb|1RJW|C Chain C, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
pdb|1RJW|D Chain D, Crystal Structure Of Nad(+)-Dependent Alcohol
Dehydrogenase From Bacillus Stearothermophilus Strain
Lld-R
Length = 339
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 74/184 (40%), Gaps = 14/184 (7%)
Query: 22 SGFTAYVGFYEISQK-GEKVFV--SGAYGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKL 78
+G T Y K GE V + G GH+ QYAK G VV +EK+ + KE L
Sbjct: 149 AGVTTYKALKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE-L 207
Query: 79 GFDDAFNYKEETDLKATLKRYFPDGI-DVYFDNVGGEMLEAAVANMNLFGRVAACGVISE 137
G D N LK ++ + + V+ V A + N R AC ++
Sbjct: 208 GADLVVN-----PLKEDAAKFMKEKVGGVHAAVVTAVSKPAFQSAYNSIRRGGACVLVG- 261
Query: 138 CADASKRAVPNMIDIVYKRIKIQGFLSTDHFDLHQDFISMTCDALRA-GKIQPLEDISNG 196
+ +P + D V IKI G + DL + ++ ++QPLE I+
Sbjct: 262 -LPPEEMPIP-IFDTVLNGIKIIGSIVGTRKDLQEALQFAAEGKVKTIIEVQPLEKINEV 319
Query: 197 VDSI 200
D +
Sbjct: 320 FDRM 323
>pdb|2DFV|A Chain A, Hyperthermophilic Threonine Dehydrogenase From Pyrococcus
Horikoshii
pdb|2DFV|B Chain B, Hyperthermophilic Threonine Dehydrogenase From Pyrococcus
Horikoshii
pdb|2DFV|C Chain C, Hyperthermophilic Threonine Dehydrogenase From Pyrococcus
Horikoshii
Length = 347
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
Query: 37 GEKVFVSGA--YGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKA 94
G+ V ++GA G L AK G Y V + ++ L +K+G D N EE +K
Sbjct: 167 GKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKE 226
Query: 95 TLKRYFPDGIDVYFDNVGG-EMLEAAVANMNLFGRVAACGV 134
+G+DV+ + G + LE + + GRV+ G+
Sbjct: 227 VXDITDGNGVDVFLEFSGAPKALEQGLQAVTPAGRVSLLGL 267
>pdb|2D8A|A Chain A, Crystal Structure Of Ph0655 From Pyrococcus Horikoshii Ot3
Length = 348
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
Query: 37 GEKVFVSGA--YGHLVGQYAKLGGCYVVGSAGTNEKVAILKEKLGFDDAFNYKEETDLKA 94
G+ V ++GA G L AK G Y V + ++ L +K+G D N EE +K
Sbjct: 168 GKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKE 227
Query: 95 TLKRYFPDGIDVYFDNVGG-EMLEAAVANMNLFGRVAACGV 134
+G+DV+ + G + LE + + GRV+ G+
Sbjct: 228 VXDITDGNGVDVFLEFSGAPKALEQGLQAVTPAGRVSLLGL 268
>pdb|2CN3|A Chain A, Crystal Structures Of Clostridium Thermocellum
Xyloglucanase
pdb|2CN3|B Chain B, Crystal Structures Of Clostridium Thermocellum
Xyloglucanase
Length = 737
Score = 28.1 bits (61), Expect = 4.2, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 9/41 (21%)
Query: 185 GKIQPLED-----ISNGVDSIPSAFTGFFRGDNIGKKFVRI 220
GK P +D I+ +D++ GFFR D+ GK +VRI
Sbjct: 657 GKAAPGQDYMAIYITGKIDNV----LGFFRSDDAGKTWVRI 693
>pdb|2EYQ|A Chain A, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
pdb|2EYQ|B Chain B, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
Length = 1151
Score = 28.1 bits (61), Expect = 4.4, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 161 GFLSTDHFDLHQDFISMTCDALRAGKIQPLEDISN 195
G + T F L+ + + DAL+AG+ LED+++
Sbjct: 968 GSMETIGFSLYMELLENAVDALKAGREPSLEDLTS 1002
>pdb|2CN2|A Chain A, Crystal Structures Of Clostridium Thermocellum
Xyloglucanase
pdb|2CN2|B Chain B, Crystal Structures Of Clostridium Thermocellum
Xyloglucanase
pdb|2CN2|C Chain C, Crystal Structures Of Clostridium Thermocellum
Xyloglucanase
pdb|2CN2|D Chain D, Crystal Structures Of Clostridium Thermocellum
Xyloglucanase
Length = 737
Score = 27.7 bits (60), Expect = 4.7, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 9/41 (21%)
Query: 185 GKIQPLED-----ISNGVDSIPSAFTGFFRGDNIGKKFVRI 220
GK P +D I+ +D++ GFFR D+ GK +VRI
Sbjct: 657 GKAAPGQDYXAIYITGKIDNV----LGFFRSDDAGKTWVRI 693
>pdb|2CF2|D Chain D, Architecture Of Mammalian Fatty Acid Synthase
pdb|2CF2|M Chain M, Architecture Of Mammalian Fatty Acid Synthase
Length = 295
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 21 TSGFTAYVGFYEI-SQKGEKVFVSGAYGHLVG---QYAKLGGCYVVGSAGTNEKVAILKE 76
S TAY+ ++ GEKV V A G L Q A+ G V+ +A EK+A L
Sbjct: 109 VSFLTAYLALKRAQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLA-LPL 167
Query: 77 KLGFDDAFNYKEETD 91
LG ++A Y E +
Sbjct: 168 ALGAEEAATYAEVPE 182
>pdb|1TPZ|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TPZ|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQ2|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQ2|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 422
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 194 SNGVDSIPSAFTGFFRGDNIGKKFV 218
S+ + +PS+FTG+F+ N G+K +
Sbjct: 10 SDENNDLPSSFTGYFKKFNTGRKII 34
>pdb|1TQ4|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 194 SNGVDSIPSAFTGFFRGDNIGKKFV 218
S+ + +PS+FTG+F+ N G+K +
Sbjct: 10 SDENNDLPSSFTGYFKKFNTGRKII 34
>pdb|1TQ6|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 194 SNGVDSIPSAFTGFFRGDNIGKKFV 218
S+ + +PS+FTG+F+ N G+K +
Sbjct: 10 SDENNDLPSSFTGYFKKFNTGRKII 34
>pdb|1TQD|A Chain A, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
pdb|1TQD|B Chain B, Crystal Structure Of Iigp1: A Paradigm For Interferon
Inducible P47 Resistance Gtpases
Length = 413
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 194 SNGVDSIPSAFTGFFRGDNIGKKFV 218
S+ + +PS+FTG+F+ N G+K +
Sbjct: 10 SDENNDLPSSFTGYFKKFNTGRKII 34
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,951,270
Number of Sequences: 62578
Number of extensions: 298975
Number of successful extensions: 783
Number of sequences better than 100.0: 55
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 726
Number of HSP's gapped (non-prelim): 57
length of query: 223
length of database: 14,973,337
effective HSP length: 95
effective length of query: 128
effective length of database: 9,028,427
effective search space: 1155638656
effective search space used: 1155638656
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)