Query 043296
Match_columns 650
No_of_seqs 369 out of 2703
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 03:32:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043296.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043296hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0100 Molecular chaperones G 100.0 3E-136 7E-141 996.6 62.0 611 6-622 35-647 (663)
2 PTZ00009 heat shock 70 kDa pro 100.0 9E-115 2E-119 973.0 79.3 643 6-650 3-653 (653)
3 PLN03184 chloroplast Hsp70; Pr 100.0 1E-104 3E-109 889.5 77.8 610 6-634 38-652 (673)
4 PTZ00186 heat shock 70 kDa pre 100.0 1E-104 2E-109 882.5 75.7 601 6-623 26-630 (657)
5 PRK13411 molecular chaperone D 100.0 1E-104 3E-109 889.3 77.2 599 7-622 2-605 (653)
6 PRK13410 molecular chaperone D 100.0 3E-104 7E-109 883.2 73.6 598 7-618 2-607 (668)
7 KOG0101 Molecular chaperones H 100.0 3E-106 6E-111 852.3 52.7 615 1-619 1-615 (620)
8 PTZ00400 DnaK-type molecular c 100.0 8E-104 2E-108 883.4 74.3 598 6-622 40-642 (663)
9 PRK00290 dnaK molecular chaper 100.0 8E-103 2E-107 877.1 77.3 594 7-621 2-600 (627)
10 CHL00094 dnaK heat shock prote 100.0 2E-100 5E-105 854.4 75.3 594 7-619 2-600 (621)
11 TIGR02350 prok_dnaK chaperone 100.0 3E-100 7E-105 854.1 74.5 589 8-617 1-594 (595)
12 TIGR01991 HscA Fe-S protein as 100.0 1.1E-98 2E-103 835.1 74.9 584 9-618 1-585 (599)
13 PRK05183 hscA chaperone protei 100.0 2E-97 4E-102 826.5 73.5 584 7-619 19-602 (616)
14 KOG0102 Molecular chaperones m 100.0 9.8E-98 2E-102 753.6 47.0 602 5-622 25-631 (640)
15 PF00012 HSP70: Hsp70 protein; 100.0 9.4E-96 2E-100 826.9 68.9 598 9-618 1-602 (602)
16 PRK01433 hscA chaperone protei 100.0 3.1E-93 6.7E-98 785.2 69.4 550 7-611 19-572 (595)
17 KOG0103 Molecular chaperones H 100.0 5E-92 1.1E-96 733.7 51.6 594 9-610 3-640 (727)
18 COG0443 DnaK Molecular chapero 100.0 4.9E-91 1.1E-95 763.0 61.3 573 6-618 4-578 (579)
19 KOG0104 Molecular chaperones G 100.0 5.1E-83 1.1E-87 666.6 52.0 603 6-619 21-738 (902)
20 PRK11678 putative chaperone; P 100.0 9E-56 2E-60 471.4 39.4 337 9-386 2-448 (450)
21 PRK13928 rod shape-determining 100.0 3.3E-39 7.2E-44 337.1 34.8 307 10-386 6-324 (336)
22 PRK13929 rod-share determining 100.0 3.1E-38 6.8E-43 328.6 35.4 306 8-383 5-324 (335)
23 PRK13927 rod shape-determining 100.0 3.5E-36 7.7E-41 314.8 35.5 308 7-385 5-324 (334)
24 TIGR00904 mreB cell shape dete 100.0 4.7E-36 1E-40 313.2 34.5 307 9-385 4-327 (333)
25 PRK13930 rod shape-determining 100.0 5.5E-35 1.2E-39 306.2 34.2 308 8-385 9-328 (335)
26 PF06723 MreB_Mbl: MreB/Mbl pr 100.0 2.3E-31 5.1E-36 269.9 25.0 306 8-383 2-319 (326)
27 TIGR02529 EutJ ethanolamine ut 100.0 3.1E-30 6.7E-35 254.3 25.0 203 118-381 36-238 (239)
28 COG1077 MreB Actin-like ATPase 100.0 3.7E-28 8.1E-33 235.9 26.9 311 7-387 6-333 (342)
29 PRK15080 ethanolamine utilizat 100.0 3.5E-27 7.6E-32 236.8 28.0 202 121-383 66-267 (267)
30 TIGR01174 ftsA cell division p 99.9 1.1E-22 2.4E-27 215.6 24.3 194 157-382 158-371 (371)
31 PRK09472 ftsA cell division pr 99.9 9.8E-22 2.1E-26 210.6 28.1 196 159-385 168-388 (420)
32 COG0849 ftsA Cell division ATP 99.8 2.6E-18 5.6E-23 179.0 25.9 205 147-386 159-381 (418)
33 COG4820 EutJ Ethanolamine util 99.7 4.5E-17 9.7E-22 146.8 10.9 197 125-382 75-271 (277)
34 cd00012 ACTIN Actin; An ubiqui 99.7 8.3E-16 1.8E-20 163.4 18.0 239 122-385 75-347 (371)
35 smart00268 ACTIN Actin. ACTIN 99.6 1.3E-14 2.9E-19 154.4 17.4 297 8-384 2-346 (373)
36 PRK13917 plasmid segregation p 99.6 7.9E-13 1.7E-17 137.8 25.6 212 142-388 109-339 (344)
37 PTZ00280 Actin-related protein 99.5 1.2E-12 2.5E-17 140.9 23.5 226 121-360 81-336 (414)
38 TIGR03739 PRTRC_D PRTRC system 99.4 1.5E-11 3.3E-16 127.5 20.8 209 142-383 101-318 (320)
39 PF00022 Actin: Actin; InterP 99.4 2E-11 4.3E-16 131.1 21.7 311 6-385 3-367 (393)
40 PTZ00452 actin; Provisional 99.4 2.6E-11 5.5E-16 128.3 21.9 235 122-384 80-348 (375)
41 PTZ00004 actin-2; Provisional 99.4 6.5E-11 1.4E-15 125.7 22.1 233 122-384 81-351 (378)
42 TIGR01175 pilM type IV pilus a 99.4 1.9E-10 4.2E-15 121.3 25.4 161 156-361 142-307 (348)
43 PTZ00281 actin; Provisional 99.3 4.5E-11 9.7E-16 126.8 19.3 233 122-384 81-349 (376)
44 PF11104 PilM_2: Type IV pilus 99.3 6.4E-11 1.4E-15 124.1 18.7 210 128-383 91-339 (340)
45 PTZ00466 actin-like protein; P 99.2 5.1E-10 1.1E-14 118.6 20.8 234 122-384 87-353 (380)
46 PF06406 StbA: StbA protein; 99.1 8.8E-10 1.9E-14 114.0 14.8 174 172-380 141-316 (318)
47 TIGR00241 CoA_E_activ CoA-subs 99.0 2.3E-08 4.9E-13 99.9 18.2 169 175-381 73-247 (248)
48 COG4972 PilM Tfp pilus assembl 98.9 6.1E-07 1.3E-11 88.7 23.0 158 159-361 151-312 (354)
49 KOG0679 Actin-related protein 98.9 1.7E-07 3.6E-12 93.9 19.0 116 122-250 86-202 (426)
50 COG5277 Actin and related prot 98.8 2.7E-07 5.9E-12 98.4 18.8 98 143-250 106-204 (444)
51 TIGR03192 benz_CoA_bzdQ benzoy 98.8 2.8E-06 6E-11 84.8 23.6 182 175-386 106-289 (293)
52 PRK10719 eutA reactivating fac 98.6 2.2E-07 4.9E-12 97.3 12.0 83 145-242 90-184 (475)
53 TIGR02261 benz_CoA_red_D benzo 98.6 1.2E-05 2.7E-10 79.1 22.4 178 176-383 80-262 (262)
54 TIGR03286 methan_mark_15 putat 98.6 8.3E-06 1.8E-10 84.6 21.5 176 175-384 220-402 (404)
55 COG1924 Activator of 2-hydroxy 98.5 2E-05 4.3E-10 79.7 22.1 175 175-386 211-391 (396)
56 PF07520 SrfB: Virulence facto 98.3 8.7E-05 1.9E-09 84.4 23.5 330 52-387 330-836 (1002)
57 PRK13317 pantothenate kinase; 98.3 0.00012 2.7E-09 73.6 21.6 48 337-384 223-273 (277)
58 PF08841 DDR: Diol dehydratase 98.2 5.1E-05 1.1E-09 73.4 14.7 191 166-383 105-329 (332)
59 KOG0676 Actin and related prot 98.0 0.0002 4.4E-09 74.0 16.8 209 125-360 82-314 (372)
60 TIGR02259 benz_CoA_red_A benzo 97.8 0.00053 1.1E-08 70.6 15.3 179 175-383 249-432 (432)
61 KOG0677 Actin-related protein 97.6 0.0017 3.7E-08 62.1 14.0 221 144-388 102-364 (389)
62 COG4457 SrfB Uncharacterized p 97.2 0.12 2.6E-06 56.2 23.5 83 300-387 744-848 (1014)
63 KOG0797 Actin-related protein 97.2 0.003 6.5E-08 66.2 11.3 152 115-286 194-354 (618)
64 PF01869 BcrAD_BadFG: BadF/Bad 97.2 0.15 3.2E-06 51.7 23.9 71 310-383 197-271 (271)
65 KOG0680 Actin-related protein 96.9 0.033 7.2E-07 55.3 14.9 101 143-248 93-198 (400)
66 PF02782 FGGY_C: FGGY family o 96.9 0.0019 4.2E-08 62.0 6.5 76 308-385 120-196 (198)
67 PF14574 DUF4445: Domain of un 96.8 0.04 8.6E-07 58.5 15.3 84 298-382 290-374 (412)
68 PF06277 EutA: Ethanolamine ut 96.7 0.016 3.4E-07 61.5 11.3 88 146-239 88-178 (473)
69 TIGR01315 5C_CHO_kinase FGGY-f 96.1 0.018 3.9E-07 64.5 8.8 85 302-388 409-493 (541)
70 PRK15027 xylulokinase; Provisi 96.1 0.017 3.6E-07 63.9 8.2 78 304-388 357-437 (484)
71 PLN02669 xylulokinase 96.1 0.02 4.3E-07 64.1 8.7 72 311-385 421-492 (556)
72 PRK11031 guanosine pentaphosph 95.6 0.22 4.7E-06 55.0 14.5 77 159-243 94-171 (496)
73 COG1069 AraB Ribulose kinase [ 95.5 0.15 3.3E-06 54.8 12.1 181 200-388 269-481 (544)
74 PRK10854 exopolyphosphatase; P 95.4 0.2 4.3E-06 55.6 13.0 76 160-243 100-176 (513)
75 TIGR01312 XylB D-xylulose kina 95.4 0.049 1.1E-06 60.2 8.4 78 309-388 362-440 (481)
76 PRK04123 ribulokinase; Provisi 95.3 0.043 9.4E-07 61.6 7.9 77 310-388 412-489 (548)
77 TIGR00744 ROK_glcA_fam ROK fam 95.3 3.4 7.3E-05 42.8 21.6 45 168-216 96-140 (318)
78 PRK00047 glpK glycerol kinase; 95.3 0.051 1.1E-06 60.3 8.2 78 309-388 375-453 (498)
79 TIGR02628 fuculo_kin_coli L-fu 95.3 0.045 9.7E-07 60.1 7.6 76 309-388 365-443 (465)
80 TIGR01311 glycerol_kin glycero 95.3 0.046 1E-06 60.5 7.7 78 309-388 371-449 (493)
81 PTZ00294 glycerol kinase-like 95.2 0.056 1.2E-06 60.0 8.3 77 310-388 379-456 (504)
82 TIGR01234 L-ribulokinase L-rib 95.2 0.058 1.3E-06 60.4 8.2 76 311-388 410-486 (536)
83 KOG2517 Ribulose kinase and re 95.2 0.071 1.5E-06 57.5 8.3 79 309-389 386-465 (516)
84 PF01968 Hydantoinase_A: Hydan 95.1 0.036 7.7E-07 56.6 5.7 69 311-382 216-284 (290)
85 PRK10331 L-fuculokinase; Provi 95.1 0.058 1.2E-06 59.4 7.8 77 310-388 362-439 (470)
86 PF14450 FtsA: Cell division p 94.9 0.056 1.2E-06 47.2 5.8 47 201-247 1-52 (120)
87 PRK09698 D-allose kinase; Prov 94.9 5.2 0.00011 41.0 22.6 49 336-384 236-295 (302)
88 TIGR02627 rhamnulo_kin rhamnul 94.8 0.07 1.5E-06 58.4 7.4 79 304-388 357-436 (454)
89 TIGR01314 gntK_FGGY gluconate 94.8 0.08 1.7E-06 58.8 8.0 75 309-388 373-451 (505)
90 PLN02295 glycerol kinase 94.8 0.084 1.8E-06 58.8 8.0 78 309-388 379-462 (512)
91 TIGR00555 panK_eukar pantothen 94.7 0.51 1.1E-05 47.5 12.5 47 335-381 229-278 (279)
92 PRK10939 autoinducer-2 (AI-2) 94.5 0.1 2.2E-06 58.2 7.8 75 309-388 381-459 (520)
93 PRK10640 rhaB rhamnulokinase; 94.4 0.097 2.1E-06 57.5 7.4 75 311-388 349-424 (471)
94 KOG2531 Sugar (pentulose and h 94.4 0.15 3.3E-06 53.3 8.0 56 328-385 434-489 (545)
95 smart00842 FtsA Cell division 94.3 0.14 3.1E-06 48.6 7.3 30 157-186 157-186 (187)
96 PRK09557 fructokinase; Reviewe 93.4 11 0.00023 38.8 21.1 48 336-383 244-299 (301)
97 COG1070 XylB Sugar (pentulose 92.7 0.57 1.2E-05 52.0 9.9 77 304-387 371-450 (502)
98 PRK09604 UGMP family protein; 92.7 13 0.00029 38.7 19.4 52 336-387 254-310 (332)
99 PF07318 DUF1464: Protein of u 92.5 2.2 4.7E-05 43.9 12.6 54 335-389 259-319 (343)
100 KOG0681 Actin-related protein 92.3 1.3 2.8E-05 47.5 11.0 99 144-250 117-216 (645)
101 COG1548 Predicted transcriptio 91.9 0.53 1.1E-05 45.6 7.0 73 128-218 76-149 (330)
102 PF02541 Ppx-GppA: Ppx/GppA ph 91.9 0.38 8.3E-06 49.0 6.7 74 162-243 77-151 (285)
103 COG4819 EutA Ethanolamine util 91.2 1.4 3E-05 44.4 9.2 88 146-239 90-180 (473)
104 KOG0681 Actin-related protein 91.0 0.3 6.5E-06 52.1 4.8 49 337-385 559-614 (645)
105 PTZ00288 glucokinase 1; Provis 90.4 9.9 0.00022 40.6 15.7 21 6-26 25-45 (405)
106 COG0248 GppA Exopolyphosphatas 89.8 3.6 7.8E-05 45.1 12.0 94 122-218 52-148 (492)
107 PRK14878 UGMP family protein; 89.6 28 0.00061 36.1 18.4 24 337-360 242-265 (323)
108 PF14450 FtsA: Cell division p 89.1 0.3 6.6E-06 42.6 2.6 59 124-186 48-119 (120)
109 TIGR03706 exo_poly_only exopol 88.0 2.9 6.3E-05 43.0 9.4 106 126-243 56-164 (300)
110 PRK11546 zraP zinc resistance 87.8 13 0.00029 33.1 11.9 21 514-534 42-62 (143)
111 PF03702 UPF0075: Uncharacteri 87.7 2 4.3E-05 45.1 8.0 75 309-386 260-338 (364)
112 COG0554 GlpK Glycerol kinase [ 87.6 1.9 4.1E-05 46.0 7.6 78 309-388 374-452 (499)
113 PLN02666 5-oxoprolinase 87.5 6 0.00013 48.5 12.9 78 303-383 454-532 (1275)
114 TIGR03281 methan_mark_12 putat 85.4 5.5 0.00012 40.1 9.1 174 177-389 129-315 (326)
115 KOG0678 Actin-related protein 85.1 48 0.001 33.8 15.4 97 145-247 108-207 (415)
116 PRK14101 bifunctional glucokin 84.4 24 0.00051 40.5 15.3 74 311-385 244-330 (638)
117 PF02543 CmcH_NodU: Carbamoylt 83.9 61 0.0013 34.2 18.1 82 301-387 131-215 (360)
118 PRK13310 N-acetyl-D-glucosamin 82.8 59 0.0013 33.2 24.1 48 336-383 245-300 (303)
119 PLN02920 pantothenate kinase 1 82.8 8.5 0.00019 40.4 9.7 49 335-383 296-350 (398)
120 PRK09605 bifunctional UGMP fam 80.1 1.1E+02 0.0023 34.3 22.1 52 337-388 246-302 (535)
121 PRK09585 anmK anhydro-N-acetyl 79.8 10 0.00022 39.8 9.2 71 312-386 265-339 (365)
122 TIGR00329 gcp_kae1 metallohydr 78.6 31 0.00068 35.4 12.3 37 319-360 246-282 (305)
123 COG2377 Predicted molecular ch 78.2 24 0.00052 36.7 10.9 54 333-386 287-344 (371)
124 PRK03011 butyrate kinase; Prov 77.7 5.1 0.00011 42.2 6.3 47 336-382 295-344 (358)
125 COG0145 HyuA N-methylhydantoin 76.0 3 6.6E-05 47.4 4.3 41 174-217 256-296 (674)
126 PRK00976 hypothetical protein; 76.0 12 0.00025 38.6 8.0 50 336-388 263-314 (326)
127 PRK09343 prefoldin subunit bet 75.3 44 0.00096 29.0 10.5 89 530-622 22-114 (121)
128 PF00370 FGGY_N: FGGY family o 74.9 2.8 6.1E-05 41.5 3.4 19 8-26 1-19 (245)
129 TIGR03722 arch_KAE1 universal 74.2 1.1E+02 0.0025 31.6 18.8 42 337-378 243-289 (322)
130 COG1940 NagC Transcriptional r 74.1 35 0.00076 35.1 11.5 23 4-26 3-25 (314)
131 smart00732 YqgFc Likely ribonu 74.0 3.1 6.6E-05 34.5 2.9 19 8-26 2-20 (99)
132 KOG1385 Nucleoside phosphatase 71.1 11 0.00023 39.6 6.5 79 115-217 151-231 (453)
133 cd06007 R3H_DEXH_helicase R3H 70.9 14 0.0003 27.6 5.4 29 145-173 16-44 (59)
134 TIGR00143 hypF [NiFe] hydrogen 70.4 9.3 0.0002 44.1 6.6 49 336-384 658-711 (711)
135 KOG2708 Predicted metalloprote 69.5 29 0.00062 33.4 8.4 76 302-382 224-301 (336)
136 PF03652 UPF0081: Uncharacteri 69.0 5.4 0.00012 35.5 3.4 20 8-27 2-21 (135)
137 PF08735 DUF1786: Putative pyr 68.4 68 0.0015 31.7 11.1 97 140-243 111-209 (254)
138 PTZ00340 O-sialoglycoprotein e 67.0 1.7E+02 0.0037 30.6 19.7 115 118-241 40-163 (345)
139 COG1070 XylB Sugar (pentulose 66.9 5.9 0.00013 43.9 4.0 22 6-27 3-24 (502)
140 PTZ00294 glycerol kinase-like 65.9 5.3 0.00011 44.4 3.4 21 7-27 2-22 (504)
141 PRK10331 L-fuculokinase; Provi 65.6 5.1 0.00011 44.0 3.2 20 7-26 2-21 (470)
142 TIGR03723 bact_gcp putative gl 65.5 1.7E+02 0.0037 30.2 19.5 56 321-381 249-309 (314)
143 PRK10939 autoinducer-2 (AI-2) 65.3 5.5 0.00012 44.5 3.4 21 7-27 3-23 (520)
144 PRK00047 glpK glycerol kinase; 64.6 6.1 0.00013 43.8 3.6 20 7-26 5-24 (498)
145 TIGR03123 one_C_unchar_1 proba 64.6 4.8 0.0001 41.4 2.5 19 199-217 128-146 (318)
146 PRK13331 pantothenate kinase; 63.9 9.6 0.00021 37.8 4.4 28 1-28 1-28 (251)
147 cd02640 R3H_NRF R3H domain of 62.2 28 0.00061 26.1 5.6 41 132-173 5-45 (60)
148 PF00814 Peptidase_M22: Glycop 61.9 1.4E+02 0.0031 29.9 12.6 192 120-360 22-245 (268)
149 PRK13311 N-acetyl-D-glucosamin 61.2 1.2E+02 0.0025 30.2 11.9 38 169-209 96-133 (256)
150 TIGR02259 benz_CoA_red_A benzo 60.9 7.1 0.00015 41.1 2.9 23 6-28 1-23 (432)
151 PF07820 TraC: TraC-like prote 60.9 79 0.0017 25.8 8.1 22 603-624 46-67 (92)
152 cd00529 RuvC_resolvase Hollida 59.8 13 0.00027 34.0 4.1 25 9-33 2-28 (154)
153 PRK04123 ribulokinase; Provisi 59.6 8.8 0.00019 43.2 3.7 19 7-25 3-21 (548)
154 PF00349 Hexokinase_1: Hexokin 58.5 30 0.00065 33.3 6.6 29 197-225 61-90 (206)
155 TIGR01234 L-ribulokinase L-rib 58.3 9.1 0.0002 42.9 3.5 18 8-25 2-19 (536)
156 PRK00109 Holliday junction res 57.9 11 0.00023 33.7 3.3 21 7-27 4-24 (138)
157 PF15290 Syntaphilin: Golgi-lo 57.8 37 0.00081 33.6 7.0 33 530-562 76-109 (305)
158 COG5026 Hexokinase [Carbohydra 57.6 50 0.0011 35.1 8.4 21 5-25 73-93 (466)
159 KOG2008 BTK-associated SH3-dom 55.4 1.7E+02 0.0037 29.6 11.1 49 572-620 184-235 (426)
160 PTZ00107 hexokinase; Provision 55.3 3.2E+02 0.0069 30.0 21.5 64 151-216 189-254 (464)
161 TIGR02628 fuculo_kin_coli L-fu 55.2 9.5 0.00021 41.9 3.0 19 8-26 2-20 (465)
162 PRK15027 xylulokinase; Provisi 54.2 11 0.00023 41.8 3.2 19 8-26 1-19 (484)
163 COG0816 Predicted endonuclease 54.0 13 0.00028 33.2 3.1 21 7-27 2-22 (141)
164 COG2441 Predicted butyrate kin 53.4 87 0.0019 31.2 8.7 55 335-389 272-336 (374)
165 TIGR01311 glycerol_kin glycero 53.1 12 0.00025 41.5 3.3 19 8-26 2-20 (493)
166 TIGR01314 gntK_FGGY gluconate 52.5 12 0.00026 41.6 3.2 19 8-26 1-19 (505)
167 COG4012 Uncharacterized protei 51.1 94 0.002 30.7 8.5 88 150-250 186-276 (342)
168 PLN02295 glycerol kinase 50.8 13 0.00028 41.4 3.2 19 8-26 1-19 (512)
169 COG4907 Predicted membrane pro 50.0 11 0.00024 39.7 2.3 18 200-217 172-189 (595)
170 PRK00039 ruvC Holliday junctio 49.8 15 0.00032 34.0 2.9 19 7-25 2-20 (164)
171 TIGR01315 5C_CHO_kinase FGGY-f 49.5 14 0.00031 41.4 3.3 18 9-26 2-19 (541)
172 PLN02362 hexokinase 48.2 25 0.00054 38.8 4.8 53 157-215 206-260 (509)
173 PF13941 MutL: MutL protein 47.4 15 0.00033 39.7 2.9 33 9-45 2-36 (457)
174 PLN03184 chloroplast Hsp70; Pr 47.4 2E+02 0.0043 33.3 12.2 36 571-606 566-605 (673)
175 PF02075 RuvC: Crossover junct 47.1 33 0.00071 31.1 4.6 25 9-33 1-27 (149)
176 KOG0103 Molecular chaperones H 47.0 45 0.00097 37.5 6.3 44 572-615 671-725 (727)
177 COG3426 Butyrate kinase [Energ 46.7 53 0.0011 32.8 6.1 48 334-381 294-344 (358)
178 PRK13881 conjugal transfer pro 46.6 86 0.0019 33.7 8.1 40 568-607 176-216 (472)
179 PRK05082 N-acetylmannosamine k 46.5 78 0.0017 32.1 7.9 49 336-384 233-287 (291)
180 PF09921 DUF2153: Uncharacteri 46.3 2E+02 0.0043 25.0 10.9 98 523-620 15-116 (126)
181 PLN02669 xylulokinase 46.2 21 0.00045 40.2 3.9 23 4-26 5-27 (556)
182 PF14574 DUF4445: Domain of un 45.8 85 0.0018 33.7 8.2 46 308-353 55-100 (412)
183 cd02641 R3H_Smubp-2_like R3H d 45.6 85 0.0018 23.5 5.9 28 146-173 18-45 (60)
184 COG0533 QRI7 Metal-dependent p 45.3 3.8E+02 0.0081 27.9 19.5 217 117-360 40-285 (342)
185 COG5026 Hexokinase [Carbohydra 45.2 52 0.0011 35.0 6.2 31 196-226 72-103 (466)
186 PF05957 DUF883: Bacterial pro 44.4 1.3E+02 0.0029 24.5 7.6 67 519-591 5-73 (94)
187 KOG3759 Uncharacterized RUN do 44.4 3.6E+02 0.0078 28.9 11.9 26 595-620 229-254 (621)
188 cd02646 R3H_G-patch R3H domain 43.9 61 0.0013 24.0 4.9 41 130-173 3-43 (58)
189 PRK13318 pantothenate kinase; 43.8 24 0.00052 35.3 3.6 20 9-28 2-21 (258)
190 PRK13321 pantothenate kinase; 43.1 26 0.00056 35.0 3.7 20 9-28 2-21 (256)
191 COG4012 Uncharacterized protei 43.1 63 0.0014 31.9 6.0 73 200-279 2-97 (342)
192 PF10458 Val_tRNA-synt_C: Valy 40.3 1.6E+02 0.0035 22.3 7.4 43 543-585 11-53 (66)
193 TIGR00250 RNAse_H_YqgF RNAse H 39.1 20 0.00042 31.7 1.8 17 10-26 1-17 (130)
194 PF08006 DUF1700: Protein of u 38.8 75 0.0016 29.7 5.9 16 541-556 22-37 (181)
195 cd02639 R3H_RRM R3H domain of 38.6 62 0.0013 24.2 4.1 29 145-173 17-45 (60)
196 TIGR02707 butyr_kinase butyrat 37.9 49 0.0011 34.8 4.9 46 336-381 293-341 (351)
197 KOG1369 Hexokinase [Carbohydra 36.9 61 0.0013 35.2 5.4 66 149-220 184-252 (474)
198 KOG0797 Actin-related protein 36.7 13 0.00028 40.0 0.4 53 335-387 525-591 (618)
199 PF00480 ROK: ROK family; Int 36.7 1.6E+02 0.0034 27.2 7.8 88 119-216 31-134 (179)
200 PLN02902 pantothenate kinase 36.7 2.2E+02 0.0048 33.4 10.0 50 335-384 345-400 (876)
201 KOG2196 Nuclear porin [Nuclear 36.1 2.9E+02 0.0063 27.0 9.1 37 571-611 215-251 (254)
202 PLN02377 3-ketoacyl-CoA syntha 35.9 99 0.0021 34.2 7.0 54 308-361 165-219 (502)
203 COG2192 Predicted carbamoyl tr 35.8 6.6E+02 0.014 28.0 22.9 82 302-388 255-338 (555)
204 PTZ00009 heat shock 70 kDa pro 35.5 2.3E+02 0.0051 32.6 10.3 16 545-560 569-584 (653)
205 PRK13320 pantothenate kinase; 35.1 44 0.00096 33.1 3.8 21 8-28 3-23 (244)
206 COG4296 Uncharacterized protei 35.1 73 0.0016 27.8 4.5 21 583-603 91-112 (156)
207 PRK13326 pantothenate kinase; 35.0 50 0.0011 33.1 4.2 23 6-28 5-27 (262)
208 PRK00292 glk glucokinase; Prov 34.5 36 0.00079 35.1 3.3 44 167-210 88-139 (316)
209 PLN02405 hexokinase 33.6 2.5E+02 0.0055 31.0 9.6 58 155-218 204-263 (497)
210 COG2971 Predicted N-acetylgluc 32.0 5.7E+02 0.012 26.1 21.4 66 314-387 227-293 (301)
211 PF02685 Glucokinase: Glucokin 31.7 4E+02 0.0087 27.5 10.3 84 167-251 88-181 (316)
212 PRK11199 tyrA bifunctional cho 31.2 3.7E+02 0.008 28.5 10.3 51 304-358 67-120 (374)
213 PF00349 Hexokinase_1: Hexokin 31.0 40 0.00086 32.4 2.7 39 151-189 163-204 (206)
214 COG4575 ElaB Uncharacterized c 30.7 3.3E+02 0.0071 22.9 8.1 68 519-592 15-84 (104)
215 KOG2003 TPR repeat-containing 30.0 1.2E+02 0.0027 32.3 6.0 23 593-615 710-732 (840)
216 PLN03170 chalcone synthase; Pr 29.5 1.7E+02 0.0036 31.5 7.4 48 314-361 105-153 (401)
217 PF13941 MutL: MutL protein 29.2 1.3E+02 0.0028 32.8 6.3 47 201-247 2-49 (457)
218 PLN03173 chalcone synthase; Pr 29.2 1.9E+02 0.0041 30.9 7.7 48 314-361 101-149 (391)
219 KOG2517 Ribulose kinase and re 29.0 54 0.0012 36.0 3.5 20 6-25 5-24 (516)
220 PLN03172 chalcone synthase fam 28.8 2E+02 0.0043 30.8 7.7 50 312-361 99-149 (393)
221 PLN02914 hexokinase 28.5 5E+02 0.011 28.7 10.8 62 151-218 200-263 (490)
222 PLN00130 succinate dehydrogena 27.4 8.1 0.00018 35.3 -2.5 21 7-27 57-77 (213)
223 COG4755 Uncharacterized protei 27.2 4.2E+02 0.0091 23.1 10.1 78 543-620 55-134 (151)
224 COG2605 Predicted kinase relat 27.2 1.5E+02 0.0032 30.0 5.8 21 540-560 218-238 (333)
225 KOG4001 Axonemal dynein light 27.1 4.2E+02 0.009 25.1 8.3 49 538-589 194-242 (259)
226 PRK13848 conjugal transfer pro 27.0 3.5E+02 0.0076 22.1 8.0 21 603-623 47-67 (98)
227 PF11593 Med3: Mediator comple 25.9 74 0.0016 33.0 3.6 37 580-617 10-46 (379)
228 KOG3133 40 kDa farnesylated pr 25.8 2.3E+02 0.005 28.1 6.7 59 546-611 142-204 (267)
229 COG1382 GimC Prefoldin, chaper 25.8 4.4E+02 0.0096 22.8 10.4 46 571-620 66-111 (119)
230 PLN02596 hexokinase-like 25.5 8.4E+02 0.018 26.9 11.9 163 4-220 93-265 (490)
231 PF04848 Pox_A22: Poxvirus A22 25.4 1.1E+02 0.0025 27.4 4.3 18 8-25 2-19 (143)
232 PRK12408 glucokinase; Provisio 25.4 53 0.0011 34.3 2.6 22 5-26 14-35 (336)
233 TIGR03752 conj_TIGR03752 integ 24.6 7.8E+02 0.017 26.9 11.0 25 594-618 117-141 (472)
234 TIGR02627 rhamnulo_kin rhamnul 24.5 37 0.0008 37.1 1.3 16 10-25 1-16 (454)
235 COG5185 HEC1 Protein involved 24.5 5.1E+02 0.011 28.0 9.3 43 519-561 281-327 (622)
236 PF07865 DUF1652: Protein of u 24.3 2.5E+02 0.0054 21.7 5.4 49 480-529 15-65 (69)
237 PLN03168 chalcone synthase; Pr 24.2 2.4E+02 0.0051 30.1 7.3 51 311-361 97-148 (389)
238 cd04036 C2_cPLA2 C2 domain pre 24.1 4.3E+02 0.0093 22.3 7.8 60 432-496 54-115 (119)
239 COG1940 NagC Transcriptional r 24.0 3.1E+02 0.0068 28.0 8.1 51 197-247 4-54 (314)
240 PRK10404 hypothetical protein; 23.9 4.4E+02 0.0094 22.1 8.1 68 519-592 12-81 (101)
241 PF07066 DUF3882: Lactococcus 23.5 96 0.0021 27.7 3.3 24 6-29 1-29 (159)
242 TIGR00671 baf pantothenate kin 23.4 81 0.0017 31.2 3.4 19 10-28 2-20 (243)
243 PLN02854 3-ketoacyl-CoA syntha 23.3 1.7E+02 0.0036 32.5 6.0 45 317-361 190-235 (521)
244 PHA02557 22 prohead core prote 23.0 7.3E+02 0.016 24.7 9.6 82 521-615 143-225 (271)
245 PF03630 Fumble: Fumble ; Int 22.9 2.3E+02 0.005 29.6 6.7 47 336-382 287-339 (341)
246 KOG1794 N-Acetylglucosamine ki 22.9 2.6E+02 0.0057 28.3 6.6 49 339-387 266-318 (336)
247 KOG1369 Hexokinase [Carbohydra 22.8 5E+02 0.011 28.4 9.3 26 196-221 83-108 (474)
248 PRK00180 acetate kinase A/prop 22.8 1.2E+02 0.0027 32.3 4.7 47 312-361 302-349 (402)
249 PF05378 Hydant_A_N: Hydantoin 22.8 92 0.002 29.1 3.4 18 10-27 2-19 (176)
250 PF03309 Pan_kinase: Type III 22.6 1E+02 0.0023 29.4 3.9 21 9-29 1-21 (206)
251 PF08392 FAE1_CUT1_RppA: FAE1/ 22.4 2.1E+02 0.0045 29.1 6.0 44 318-361 86-130 (290)
252 PF02801 Ketoacyl-synt_C: Beta 22.2 88 0.0019 26.9 3.0 46 317-362 25-72 (119)
253 TIGR01319 glmL_fam conserved h 22.0 46 0.00099 35.9 1.4 30 329-358 382-414 (463)
254 TIGR01312 XylB D-xylulose kina 21.9 49 0.0011 36.4 1.7 17 10-26 1-17 (481)
255 PLN02914 hexokinase 21.7 2.2E+02 0.0048 31.3 6.6 24 197-220 93-116 (490)
256 COG0554 GlpK Glycerol kinase [ 21.6 82 0.0018 34.1 3.1 21 6-26 4-24 (499)
257 KOG0104 Molecular chaperones G 21.4 1.1E+03 0.023 27.5 11.6 55 567-621 774-840 (902)
258 PRK13324 pantothenate kinase; 21.4 99 0.0022 30.9 3.6 20 9-28 2-21 (258)
259 COG1521 Pantothenate kinase ty 21.3 99 0.0021 30.7 3.4 44 305-348 181-224 (251)
260 PRK13321 pantothenate kinase; 21.3 3.4E+02 0.0073 27.0 7.4 17 201-217 2-18 (256)
261 PF12401 DUF3662: Protein of u 21.1 3.6E+02 0.0079 23.2 6.5 87 240-335 5-94 (116)
262 PLN02362 hexokinase 20.6 2.9E+02 0.0063 30.6 7.2 25 197-221 93-117 (509)
263 COG2410 Predicted nuclease (RN 20.6 1.8E+02 0.0038 26.8 4.5 31 8-38 2-33 (178)
264 COG5418 Predicted secreted pro 20.4 2.2E+02 0.0049 25.4 5.0 69 272-344 30-104 (164)
265 KOG0993 Rab5 GTPase effector R 20.2 6.2E+02 0.013 26.8 8.8 62 564-626 153-222 (542)
266 PF01548 DEDD_Tnp_IS110: Trans 20.2 1.5E+02 0.0033 26.1 4.3 20 9-28 1-20 (144)
267 PRK15080 ethanolamine utilizat 20.1 3.5E+02 0.0077 27.0 7.3 46 196-241 21-66 (267)
268 smart00787 Spc7 Spc7 kinetocho 20.1 9.6E+02 0.021 24.7 10.6 84 515-608 200-286 (312)
No 1
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-136 Score=996.58 Aligned_cols=611 Identities=69% Similarity=1.070 Sum_probs=596.5
Q ss_pred CCcEEEEEcCcceeEEEEEECCeeEEEecCCCCcccceEEEEcCCcEEecHHHHHhHhhCcCchhhhhhHhcCCCCCChh
Q 043296 6 EGKAIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRRFSDPS 85 (650)
Q Consensus 6 ~~~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~ 85 (650)
...|||||||||||||+++++|+++||.|++|+|.+||+|+|.+++|++|+.|+++...||+|++++.|||+|+.++++.
T Consensus 35 ~gtvigIdLGTTYsCVgV~kNgrvEIiANdQGNRItPSyVaFt~derLiGdAAKNQ~~~NPenTiFD~KRLIGr~~~d~~ 114 (663)
T KOG0100|consen 35 LGTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTDDERLIGDAAKNQLTSNPENTIFDAKRLIGRKFNDKS 114 (663)
T ss_pred cceEEEEecCCceeeEEEEeCCeEEEEecCCCCccccceeeeccchhhhhhHhhcccccCcccceechHHHhCcccCChh
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCeEEEeCCCCCceEEEEEC-CcceEecHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHH
Q 043296 86 VQSDMRHWPFKVASGPGDKPMIAVTYK-GEEKRFSPEEISSMVLTKMKEIAEAYLGHAVKNAVVTVPAYFNDSQRQATKD 164 (650)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~ 164 (650)
+|++++.+||+++ +.+++|.+.+... ++.+.|+|+++++|+|.++++.|+.++|.+++++|+||||||++.||+++++
T Consensus 115 vq~Dik~~Pfkvv-~k~~kp~i~v~v~~g~~K~FtPeEiSaMiL~KMKe~AEayLGkkv~~AVvTvPAYFNDAQrQATKD 193 (663)
T KOG0100|consen 115 VQKDIKFLPFKVV-NKDGKPYIQVKVGGGETKVFTPEEISAMILTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKD 193 (663)
T ss_pred hhhhhhcCceEEE-cCCCCccEEEEccCCcccccCHHHHHHHHHHHHHHHHHHHhCCcccceEEecchhcchHHHhhhcc
Confidence 9999999999999 5888999999987 6689999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceeeecchhHHHHHhcccccccCCCCCceEEEEEeCCcceEEEEEEEeCCEEEEEEeeCCCCCChhHHHHHHH
Q 043296 165 AGAIAGLNVMRIINEPTAAAIAYGLDKKASRTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLV 244 (650)
Q Consensus 165 Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~ 244 (650)
|..+|||+++++|+||+|||++|++++.. .++++||||+||||||||++.+.++.|+|+++.||.++||++||++++
T Consensus 194 AGtIAgLnV~RIiNePTaAAIAYGLDKk~---gEknilVfDLGGGTFDVSlLtIdnGVFeVlaTnGDThLGGEDFD~rvm 270 (663)
T KOG0100|consen 194 AGTIAGLNVVRIINEPTAAAIAYGLDKKD---GEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVM 270 (663)
T ss_pred cceeccceEEEeecCccHHHHHhcccccC---CcceEEEEEcCCceEEEEEEEEcCceEEEEecCCCcccCccchHHHHH
Confidence 99999999999999999999999999875 688999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHccCCCceEEEEcccccCeeEEEEEcHHHHHHHHHHHHhHHHHHHH
Q 043296 245 NHFVAEFRRKHKKDISGNARALRRLRTACERAKRTLSSTTQTTIEIDSLYEGIDFYATITRARFEELNMDLFRKCMEPVE 324 (650)
Q Consensus 245 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~ 324 (650)
+||.+.|+++++.+++.+.+++.+|+++||++|+.||.+.++.+.|+++++|.||+-++||..||++.-+++..+..+++
T Consensus 271 ~~fiklykkK~gkDv~kdnkA~~KLrRe~EkAKRaLSsqhq~riEIeS~fdG~DfSEtLtRAkFEElNmDLFr~TlkPv~ 350 (663)
T KOG0100|consen 271 EYFIKLYKKKHGKDVRKDNKAVQKLRREVEKAKRALSSQHQVRIEIESLFDGVDFSETLTRAKFEELNMDLFRKTLKPVQ 350 (663)
T ss_pred HHHHHHHhhhcCCccchhhHHHHHHHHHHHHHHhhhccccceEEeeeeccccccccchhhhhHHHHhhhHHHHHhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCeEEEEcCccCcHHHHHHHHhhhCCccccccCCcchhHHhHHHHHHHHHcCCCCccccceEEEeecc
Q 043296 325 KCLRDSKIDKSLVHDIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGDQKVQDLLLLDVTP 404 (650)
Q Consensus 325 ~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~~~~ 404 (650)
++|+++++++.+|+.|+||||++|||.||++|+++|+|++..+.+||++|||.|||.+|..+||. ....++++.|++|
T Consensus 351 kvl~Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsGe--e~t~divLLDv~p 428 (663)
T KOG0100|consen 351 KVLEDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSGE--EDTGDIVLLDVNP 428 (663)
T ss_pred HHHhhcCcccccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhcccccc--cCcCcEEEEeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999986 4478999999999
Q ss_pred ccceEEeeCCEEEEEEeCCCCCCccceeeeeecccCcceEEEEeeccccccccCCcceeEEEecCCCCCCCCCceeEEEE
Q 043296 405 LSLGIETAGGVMTTLIPRNTTVPAKKEQVFSTYADNQTSVLIQVYEGERARTKDNNLLGTFELKGIPPAPRGVPQINVCF 484 (650)
Q Consensus 405 ~~~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~~~~~i~v~~ 484 (650)
+++||++.+|.|..+||||+.||++++..|+++.|+|+++.|++|+|++++.++|+.||+|.+.||||+|+|.|+|+|+|
T Consensus 429 LtlGIETvGGVMTklI~RNTviPTkKSQvFsTa~DnQ~tV~I~vyEGER~mtkdn~lLGkFdltGipPAPRGvpqIEVtF 508 (663)
T KOG0100|consen 429 LTLGIETVGGVMTKLIPRNTVIPTKKSQVFSTAQDNQPTVTIQVYEGERPMTKDNHLLGKFDLTGIPPAPRGVPQIEVTF 508 (663)
T ss_pred ccceeeeecceeeccccCCcccCccccceeeecccCCceEEEEEeeccccccccccccccccccCCCCCCCCCccEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCceEEEEEeecccCceeeEEEecCCCCCCHHHHHHHHHHHhhhhHHhHHHHHHHHHHHhHHHHHHHHHhhccc-hh
Q 043296 485 DIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEDIERMVQEAEKYKAEDEQVKKKVEAKNKLENYAYSMRNTVKD-DK 563 (650)
Q Consensus 485 ~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~ls~~e~~~~~~~~~~~~~~d~~~~~~~~akN~LE~~iy~~r~~L~~-~~ 563 (650)
++|.||+|+|++.++.+|++.+++|+|+.++||+|+|++|+++.+++.++|+..+++.++||+||+|.|.+++.+.+ +.
T Consensus 509 evDangiL~VsAeDKgtg~~~kitItNd~~rLt~EdIerMv~eAekFAeeDk~~KekieaRN~LE~YayslKnqi~dkek 588 (663)
T KOG0100|consen 509 EVDANGILQVSAEDKGTGKKEKITITNDKGRLTPEDIERMVNEAEKFAEEDKKLKEKIEARNELESYAYSLKNQIGDKEK 588 (663)
T ss_pred EEccCceEEEEeeccCCCCcceEEEecCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHhhhccCchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999976 46
Q ss_pred hhcccCHHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHHhHHHHHHHHhcCCCC
Q 043296 564 VAGKLAAADKQKIEKAVDETVEWLDGNQLAEVDEFEDKLKELEGLCNPIIAKMYQGDGG 622 (650)
Q Consensus 564 ~~~~~~~~~~~~i~~~l~e~~~WL~~~~~a~~~~~~~kl~eL~~~~~~i~~r~~e~~~~ 622 (650)
+...+++++++.+...+++..+||+++.+|+.++|++++++|+.++.||..++|+.+|+
T Consensus 589 Lg~Kl~~edKe~~e~av~e~~eWL~~n~~a~~Ee~~ek~kele~vv~PiisklY~~ag~ 647 (663)
T KOG0100|consen 589 LGGKLSDEDKETIEDAVEEALEWLESNQDASKEEFKEKKKELEAVVQPIISKLYGGAGG 647 (663)
T ss_pred hcccCChhHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 88899999999999999999999999999999999999999999999999999997744
No 2
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=100.00 E-value=9.1e-115 Score=972.96 Aligned_cols=643 Identities=77% Similarity=1.171 Sum_probs=601.5
Q ss_pred CCcEEEEEcCcceeEEEEEECCeeEEEecCCCCcccceEEEEcCCcEEecHHHHHhHhhCcCchhhhhhHhcCCCCCChh
Q 043296 6 EGKAIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRRFSDPS 85 (650)
Q Consensus 6 ~~~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~ 85 (650)
...+||||||||||+||++++|.++++.|..|+|.+||+|+|.+++++||..|..+...+|.++++++||+||+.++++.
T Consensus 3 ~~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 82 (653)
T PTZ00009 3 KGPAIGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDSV 82 (653)
T ss_pred cccEEEEEeCcccEEEEEEeCCceEEEECCCCCccCCcEEEECCCCEEEcHHHHHhhhhCcccEEhhhHHHhCCCCCchh
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCeEEEeCCCCCceEEEEECCcceEecHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHH
Q 043296 86 VQSDMRHWPFKVASGPGDKPMIAVTYKGEEKRFSPEEISSMVLTKMKEIAEAYLGHAVKNAVVTVPAYFNDSQRQATKDA 165 (650)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A 165 (650)
++...+.+||.+....++.+.+.+.+.+....++|+++++++|++|++.|+.+++..+.++|||||+||++.||+++++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~A 162 (653)
T PTZ00009 83 VQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDA 162 (653)
T ss_pred HhhhhhcCceEEEEcCCCceEEEEEeCCceEEECHHHHHHHHHHHHHHHHHHHhCCCcceeEEEeCCCCCHHHHHHHHHH
Confidence 99999999999988888889999988888889999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeeecchhHHHHHhcccccccCCCCCceEEEEEeCCcceEEEEEEEeCCEEEEEEeeCCCCCChhHHHHHHHH
Q 043296 166 GAIAGLNVMRIINEPTAAAIAYGLDKKASRTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVN 245 (650)
Q Consensus 166 a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~ 245 (650)
|+.|||++++|++||+|||++|+..... ..+.++||||+||||||+|++++.++.++++++.++.++||++||..|++
T Consensus 163 a~~AGl~v~~li~EptAAAl~y~~~~~~--~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~a~~gd~~lGG~d~D~~l~~ 240 (653)
T PTZ00009 163 GTIAGLNVLRIINEPTAAAIAYGLDKKG--DGEKNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVE 240 (653)
T ss_pred HHHcCCceeEEecchHHHHHHHhhhccC--CCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCCChHHHHHHHHH
Confidence 9999999999999999999999876542 24678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhc-CCCCCccHHHHHHHHHHHHHHHHHccCCCceEEEEcccccCeeEEEEEcHHHHHHHHHHHHhHHHHHHH
Q 043296 246 HFVAEFRRKH-KKDISGNARALRRLRTACERAKRTLSSTTQTTIEIDSLYEGIDFYATITRARFEELNMDLFRKCMEPVE 324 (650)
Q Consensus 246 ~l~~~~~~~~-~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~ 324 (650)
|+.++|.+++ +.++..+++++.+|+.+||++|+.||.+.++.+.++.++++.++.++|||++||++|+|+++++..+|+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~~~~i~i~~~~~~~d~~~~itR~~fe~l~~~l~~~~~~~i~ 320 (653)
T PTZ00009 241 FCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGIDYNVTISRARFEELCGDYFRNTLQPVE 320 (653)
T ss_pred HHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCCceEEEEEEeccCCceEEEEECHHHHHHHHHHHHHHHHHHHH
Confidence 9999998877 467778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCCeEEEEcCccCcHHHHHHHHhhhCCccccccCCcchhHHhHHHHHHHHHcCCCCccccceEEEeecc
Q 043296 325 KCLRDSKIDKSLVHDIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGDQKVQDLLLLDVTP 404 (650)
Q Consensus 325 ~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~~~~ 404 (650)
++|++++++..+|+.|+||||+||+|+|++.|++.|++.++...+||++|||+|||++|+++++...++++++.+.|++|
T Consensus 321 ~~L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~ls~~~~~~~~~~~~~dv~p 400 (653)
T PTZ00009 321 KVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTP 400 (653)
T ss_pred HHHHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHhcCCccccccceEEEeecc
Confidence 99999999999999999999999999999999999976788899999999999999999999976557788999999999
Q ss_pred ccceEEeeCCEEEEEEeCCCCCCccceeeeeecccCcceEEEEeeccccccccCCcceeEEEecCCCCCCCCCceeEEEE
Q 043296 405 LSLGIETAGGVMTTLIPRNTTVPAKKEQVFSTYADNQTSVLIQVYEGERARTKDNNLLGTFELKGIPPAPRGVPQINVCF 484 (650)
Q Consensus 405 ~~~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~~~~~i~v~~ 484 (650)
++||++..++.+.+||++|++||++++++|++..|+|+.+.|.||||++...++|..||+|.|.++|+.++|.++|+++|
T Consensus 401 ~slgi~~~~~~~~~ii~~~t~iP~~~~~~f~t~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f 480 (653)
T PTZ00009 401 LSLGLETAGGVMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPRGVPQIEVTF 480 (653)
T ss_pred cccCccccCCceEEEEeCCCcCCccceeEeEeecCCCceEEEEEEecccccCCCCceEEEEEEcCCCCCCCCCceEEEEE
Confidence 99999999999999999999999999999999999999999999999999888999999999999999999988999999
Q ss_pred EEcCCceEEEEEeecccCceeeEEEecCCCCCCHHHHHHHHHHHhhhhHHhHHHHHHHHHHHhHHHHHHHHHhhccchhh
Q 043296 485 DIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEDIERMVQEAEKYKAEDEQVKKKVEAKNKLENYAYSMRNTVKDDKV 564 (650)
Q Consensus 485 ~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~ls~~e~~~~~~~~~~~~~~d~~~~~~~~akN~LE~~iy~~r~~L~~~~~ 564 (650)
++|.||+|+|++.+..+++...++|.....+|++++++++++++.++..+|+.++++.+++|+||+|||++|++|+++++
T Consensus 481 ~id~~Gil~v~~~~~~t~~~~~~~i~~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~eakN~lEs~Iy~~r~~L~~~~~ 560 (653)
T PTZ00009 481 DIDANGILNVSAEDKSTGKSNKITITNDKGRLSKADIDRMVNEAEKYKAEDEANRERVEAKNGLENYCYSMKNTLQDEKV 560 (653)
T ss_pred EECCCCeEEEEEecccCCceeeEEEeeccccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999888766789999999999999999999999999999999999999999999976568
Q ss_pred hcccCHHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCC--CCCCCC----CC-CCCC
Q 043296 565 AGKLAAADKQKIEKAVDETVEWLDGNQLAEVDEFEDKLKELEGLCNPIIAKMYQGDGGDVP--MGGGYG----SS-GSGG 637 (650)
Q Consensus 565 ~~~~~~~~~~~i~~~l~e~~~WL~~~~~a~~~~~~~kl~eL~~~~~~i~~r~~e~~~~~~~--~~~~~~----~~-~~~~ 637 (650)
..++++++++++.+.++++++||+++.+++.++|++|+++|+++++||..|++.+|+||-| |.||++ ++ |+.|
T Consensus 561 ~~~~t~ee~~~l~~~l~~~~~wL~~~~~~~~~~~~~kl~eL~~~~~pi~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (653)
T PTZ00009 561 KGKLSDSDKATIEKAIDEALEWLEKNQLAEKEEFEHKQKEVESVCNPIMTKMYQAAGGGMPGGMPGGMPGGMPGGAGPAG 640 (653)
T ss_pred hccCCHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCC
Confidence 9999999999999999999999998877899999999999999999999999988866422 222333 33 3333
Q ss_pred CCCCCCCCCCCCC
Q 043296 638 SGAGAGPKIEEVD 650 (650)
Q Consensus 638 ~~~~~~~~~~~~~ 650 (650)
+|++.|||+||||
T Consensus 641 ~~~~~~~~~~~~~ 653 (653)
T PTZ00009 641 AGASSGPTVEEVD 653 (653)
T ss_pred CCCCCCCccccCC
Confidence 5888999999998
No 3
>PLN03184 chloroplast Hsp70; Provisional
Probab=100.00 E-value=1.5e-104 Score=889.54 Aligned_cols=610 Identities=49% Similarity=0.769 Sum_probs=562.0
Q ss_pred CCcEEEEEcCcceeEEEEEECCeeEEEecCCCCcccceEEEEcC-CcEEecHHHHHhHhhCcCchhhhhhHhcCCCCCCh
Q 043296 6 EGKAIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTD-TERLIGDAAKNQVAMNPQNTVFDAKRLIGRRFSDP 84 (650)
Q Consensus 6 ~~~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~-~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~ 84 (650)
+..+||||||||||++|++++|.+++++|..|++.+||+|+|.+ +++++|..|+.+...+|.++++++|||||+.+.+
T Consensus 38 ~~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d- 116 (673)
T PLN03184 38 AEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSE- 116 (673)
T ss_pred CCCEEEEEeCcCcEEEEEEECCeEEEEECCCCCeecceEEEEcCCCCEEECHHHHHhhhhCchhhhHHHHHhhCCCcch-
Confidence 35699999999999999999999999999999999999999974 5899999999999999999999999999999865
Q ss_pred hhhhhcccCCeEEEeCCCCCceEEEEECCcceEecHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHH
Q 043296 85 SVQSDMRHWPFKVASGPGDKPMIAVTYKGEEKRFSPEEISSMVLTKMKEIAEAYLGHAVKNAVVTVPAYFNDSQRQATKD 164 (650)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~ 164 (650)
++.....+||+++...++...+.+.. .+..++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++
T Consensus 117 -~~~~~~~~~~~v~~~~~~~v~~~~~~--~~~~~speei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~ 193 (673)
T PLN03184 117 -VDEESKQVSYRVVRDENGNVKLDCPA--IGKQFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKD 193 (673)
T ss_pred -hhhhhhcCCeEEEecCCCcEEEEEec--CCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHH
Confidence 45667789999987766665555433 346899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceeeecchhHHHHHhcccccccCCCCCceEEEEEeCCcceEEEEEEEeCCEEEEEEeeCCCCCChhHHHHHHH
Q 043296 165 AGAIAGLNVMRIINEPTAAAIAYGLDKKASRTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLV 244 (650)
Q Consensus 165 Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~ 244 (650)
|++.|||++++|++||+|||++|+.... .+.++||||+||||||+|++++.++.++++++.++.++||++||+.|+
T Consensus 194 Aa~~AGl~v~~li~EPtAAAlayg~~~~----~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~L~ 269 (673)
T PLN03184 194 AGRIAGLEVLRIINEPTAASLAYGFEKK----SNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIV 269 (673)
T ss_pred HHHHCCCCeEEEeCcHHHHHHHhhcccC----CCCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHHHH
Confidence 9999999999999999999999988654 467899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHccCCCceEEEEccccc----CeeEEEEEcHHHHHHHHHHHHhHHH
Q 043296 245 NHFVAEFRRKHKKDISGNARALRRLRTACERAKRTLSSTTQTTIEIDSLYE----GIDFYATITRARFEELNMDLFRKCM 320 (650)
Q Consensus 245 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~i~~~~~----~~~~~~~itr~~fe~~~~~~~~~i~ 320 (650)
+|+.++|..+++.++..+++.+.+|+.+||++|+.||.+..+.+.++.+.. +.++...|||++||++|+++++++.
T Consensus 270 ~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~r~~ 349 (673)
T PLN03184 270 DWLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLTRAKFEELCSDLLDRCK 349 (673)
T ss_pred HHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCCcceEEEEeeeccCCCCceEEEEECHHHHHHHHHHHHHHHH
Confidence 999999999999888889999999999999999999999999888876542 2578899999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEEcCccCcHHHHHHHHhhhCCccccccCCcchhHHhHHHHHHHHHcCCCCccccceEEE
Q 043296 321 EPVEKCLRDSKIDKSLVHDIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGDQKVQDLLLL 400 (650)
Q Consensus 321 ~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~ 400 (650)
.+|+++|+++++++.+|+.|+||||+||||.|++.|++.| +.++...+||++|||+|||++|+++++. ++++.+.
T Consensus 350 ~~i~~~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~f-g~~~~~~~npdeaVA~GAAi~aa~ls~~----~~~~~~~ 424 (673)
T PLN03184 350 TPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLT-GKDPNVTVNPDEVVALGAAVQAGVLAGE----VSDIVLL 424 (673)
T ss_pred HHHHHHHHHcCCChhHccEEEEECCccccHHHHHHHHHHh-CCCcccccCcchHHHHHHHHHHHHhccC----ccceEEE
Confidence 9999999999999999999999999999999999999999 5677888999999999999999999863 6789999
Q ss_pred eeccccceEEeeCCEEEEEEeCCCCCCccceeeeeecccCcceEEEEeeccccccccCCcceeEEEecCCCCCCCCCcee
Q 043296 401 DVTPLSLGIETAGGVMTTLIPRNTTVPAKKEQVFSTYADNQTSVLIQVYEGERARTKDNNLLGTFELKGIPPAPRGVPQI 480 (650)
Q Consensus 401 ~~~~~~~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~~~~~i 480 (650)
|++|++||+++.++.+.+|||+|++||++++++|++..|+|+.+.|.+|||++....+|..||+|.|.++|+.+.|.++|
T Consensus 425 dv~p~slgi~~~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~i~~~~~g~~~i 504 (673)
T PLN03184 425 DVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQI 504 (673)
T ss_pred ecccccceEEecCCeeEEEEeCCCccceecceEeeeecCCCcEEEEEEEeecccccccCceEEEEEEeCCCCCCCCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred EEEEEEcCCceEEEEEeecccCceeeEEEecCCCCCCHHHHHHHHHHHhhhhHHhHHHHHHHHHHHhHHHHHHHHHhhcc
Q 043296 481 NVCFDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEDIERMVQEAEKYKAEDEQVKKKVEAKNKLENYAYSMRNTVK 560 (650)
Q Consensus 481 ~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~ls~~e~~~~~~~~~~~~~~d~~~~~~~~akN~LE~~iy~~r~~L~ 560 (650)
+|+|.+|.||+|+|++.+..++++..++++.. .+||+++++++++++.++..+|+.++++.++||+||+|||.+|++|.
T Consensus 505 ~v~f~id~~GiL~V~a~~~~t~~~~~~~i~~~-~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakN~lE~~iy~~r~~l~ 583 (673)
T PLN03184 505 EVKFDIDANGILSVSATDKGTGKKQDITITGA-STLPKDEVERMVQEAEKFAKEDKEKRDAVDTKNQADSVVYQTEKQLK 583 (673)
T ss_pred EEEEEeCCCCeEEEEEEecCCCeEEEEEeccc-ccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999999999999988754 56999999999999999999999999999999999999999999996
Q ss_pred chhhhcccCHHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCCCCCCCCCCC
Q 043296 561 DDKVAGKLAAADKQKIEKAVDETVEWLDGNQLAEVDEFEDKLKELEGLCNPIIAKMYQGDGGDVPMGGGYGSSG 634 (650)
Q Consensus 561 ~~~~~~~~~~~~~~~i~~~l~e~~~WL~~~~~a~~~~~~~kl~eL~~~~~~i~~r~~e~~~~~~~~~~~~~~~~ 634 (650)
+ +.+++++++++++.+.++++++||+++ +.+++++++++|.+.+.++..+++.++|+|++++..++.++
T Consensus 584 e--~~~~~~~eer~~l~~~l~~~e~wL~~~---d~~~ik~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 652 (673)
T PLN03184 584 E--LGDKVPADVKEKVEAKLKELKDAIASG---STQKMKDAMAALNQEVMQIGQSLYNQPGAGGAGPAPGGEAG 652 (673)
T ss_pred H--HhhhCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcccccC
Confidence 3 888999999999999999999999976 77899999999999999999999887765544433333333
No 4
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=100.00 E-value=1.1e-104 Score=882.53 Aligned_cols=601 Identities=47% Similarity=0.775 Sum_probs=560.1
Q ss_pred CCcEEEEEcCcceeEEEEEECCeeEEEecCCCCcccceEEEEcCCcEEecHHHHHhHhhCcCchhhhhhHhcCCCCCChh
Q 043296 6 EGKAIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRRFSDPS 85 (650)
Q Consensus 6 ~~~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~ 85 (650)
+..+||||||||||+||++++|.+++++|..|.+.+||+|+|.++++++|..|+.+...+|.++++++||+||+.+.++.
T Consensus 26 ~~~viGIDLGTTnS~vA~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~lvG~~Ak~~~~~~p~~ti~~~KRliG~~~~d~~ 105 (657)
T PTZ00186 26 QGDVIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKGSEKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDEH 105 (657)
T ss_pred cceEEEEEeCcCeEEEEEEeCCceEEeecCCCCcccceEEEECCCCEEEcHHHHHhhhhCchhHHHHHHHHhccccccHH
Confidence 34699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCeEEEeCCCCCceEEEEECCcceEecHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHH
Q 043296 86 VQSDMRHWPFKVASGPGDKPMIAVTYKGEEKRFSPEEISSMVLTKMKEIAEAYLGHAVKNAVVTVPAYFNDSQRQATKDA 165 (650)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A 165 (650)
++.....+||.+....++...+.. ..++.++|+++++++|++|++.|+.++|.++.++|||||+||++.||+++++|
T Consensus 106 v~~~~~~~p~~vv~~~~~~~~i~~---~~~~~~speeisa~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~~~qR~at~~A 182 (657)
T PTZ00186 106 IQKDIKNVPYKIVRAGNGDAWVQD---GNGKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDA 182 (657)
T ss_pred HHHhhccCcEEEEEcCCCceEEEe---CCCeEEcHHHHHHHHHHHHHHHHHHHhCCccceEEEEECCCCChHHHHHHHHH
Confidence 999999999999877666554432 33578999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeeecchhHHHHHhcccccccCCCCCceEEEEEeCCcceEEEEEEEeCCEEEEEEeeCCCCCChhHHHHHHHH
Q 043296 166 GAIAGLNVMRIINEPTAAAIAYGLDKKASRTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVN 245 (650)
Q Consensus 166 a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~ 245 (650)
+++|||+++++++||+|||++|+.+.. .+.++||||+||||||+|++++.++.++++++.|+.++||++||..|++
T Consensus 183 a~~AGl~v~rlInEPtAAAlayg~~~~----~~~~vlV~DlGGGT~DvSil~~~~g~~~V~at~Gd~~LGG~DfD~~l~~ 258 (657)
T PTZ00186 183 GTIAGLNVIRVVNEPTAAALAYGMDKT----KDSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLALSD 258 (657)
T ss_pred HHHcCCCeEEEEcChHHHHHHHhccCC----CCCEEEEEECCCCeEEEEEEEEeCCEEEEEEecCCCCCCchhHHHHHHH
Confidence 999999999999999999999997653 4679999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHccCCCceEEEEcccccC----eeEEEEEcHHHHHHHHHHHHhHHHH
Q 043296 246 HFVAEFRRKHKKDISGNARALRRLRTACERAKRTLSSTTQTTIEIDSLYEG----IDFYATITRARFEELNMDLFRKCME 321 (650)
Q Consensus 246 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~i~~~~~~----~~~~~~itr~~fe~~~~~~~~~i~~ 321 (650)
|+.++|.++++.++..+++.+.+|+.+||++|+.||.+..+.+.++.+..+ .++.+.|||++||++|+|+++++..
T Consensus 259 ~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~i~~~~~g~~~~~~~ItR~efe~l~~~l~~r~~~ 338 (657)
T PTZ00186 259 YILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSKFEGITQRLIERSIA 338 (657)
T ss_pred HHHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCCcceEEEecHHHHHHHHHHHHHHHHH
Confidence 999999999998888889999999999999999999999998888766432 4588999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCeEEEEcCccCcHHHHHHHHhhhCCccccccCCcchhHHhHHHHHHHHHcCCCCccccceEEEe
Q 043296 322 PVEKCLRDSKIDKSLVHDIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGDQKVQDLLLLD 401 (650)
Q Consensus 322 ~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~ 401 (650)
+++++|+++++++.+|+.|+||||+||||.|++.|+++|+ .++....||++|||+|||++|+++++. ++++.+.|
T Consensus 339 ~v~~~L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~fg-~~~~~~~nPdeaVA~GAAi~a~~l~~~----~~~~~l~D 413 (657)
T PTZ00186 339 PCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQ-KDPFRGVNPDEAVALGAATLGGVLRGD----VKGLVLLD 413 (657)
T ss_pred HHHHHHHHcCCChhhCCEEEEECCcccChHHHHHHHHHhC-CCccccCCCchHHHHhHHHHHHHhccc----cCceEEEe
Confidence 9999999999999999999999999999999999999994 667788999999999999999999864 57899999
Q ss_pred eccccceEEeeCCEEEEEEeCCCCCCccceeeeeecccCcceEEEEeeccccccccCCcceeEEEecCCCCCCCCCceeE
Q 043296 402 VTPLSLGIETAGGVMTTLIPRNTTVPAKKEQVFSTYADNQTSVLIQVYEGERARTKDNNLLGTFELKGIPPAPRGVPQIN 481 (650)
Q Consensus 402 ~~~~~~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~~~~~i~ 481 (650)
++|++||+++.+|.+.+|||||++||++++.+|++..|||+.+.|.||||++..+.+|..||+|+|.|+||.|+|.++|+
T Consensus 414 v~p~slgie~~~g~~~~iI~rnt~iP~~~~~~f~t~~dnQ~~v~i~i~qGe~~~~~~n~~lg~~~l~~ip~~~~G~~~I~ 493 (657)
T PTZ00186 414 VTPLSLGIETLGGVFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQIE 493 (657)
T ss_pred eccccccceecCCEEEEEEeCCCEeeEEEeeccccccCCCceEEEEEEEecccccccccccceEEEcCCCCCCCCCCcEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCceEEEEEeecccCceeeEEEecCCCCCCHHHHHHHHHHHhhhhHHhHHHHHHHHHHHhHHHHHHHHHhhccc
Q 043296 482 VCFDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEDIERMVQEAEKYKAEDEQVKKKVEAKNKLENYAYSMRNTVKD 561 (650)
Q Consensus 482 v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~ls~~e~~~~~~~~~~~~~~d~~~~~~~~akN~LE~~iy~~r~~L~~ 561 (650)
|+|++|.||+|+|++.+..||++.+++|++. ..|+++++++++++.+++..+|...+++.+++|++|.+++.++..+++
T Consensus 494 Vtf~iD~nGiL~V~a~d~~tg~~~~~~i~~~-~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (657)
T PTZ00186 494 VTFDIDANGICHVTAKDKATGKTQNITITAN-GGLSKEQIEQMIRDSEQHAEADRVKRELVEVRNNAETQLTTAERQLGE 572 (657)
T ss_pred EEEEEcCCCEEEEEEEEccCCcEEEEEeccC-ccCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999864 469999999999999999999999999999999999999999999965
Q ss_pred hhhhcccCHHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHHhHHHHHHHHhcCCCCC
Q 043296 562 DKVAGKLAAADKQKIEKAVDETVEWLDGNQLAEVDEFEDKLKELEGLCNPIIAKMYQGDGGD 623 (650)
Q Consensus 562 ~~~~~~~~~~~~~~i~~~l~e~~~WL~~~~~a~~~~~~~kl~eL~~~~~~i~~r~~e~~~~~ 623 (650)
. ..+++++++.+.+.+.+.++||..+ +.+.+++++++++|++.+.++..+++.+++|+
T Consensus 573 --~-~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 630 (657)
T PTZ00186 573 --W-KYVSDAEKENVKTLVAELRKAMENP-NVAKDDLAAATDKLQKAVMECGRTEYQQAAAA 630 (657)
T ss_pred --h-ccCCHHHHHHHHHHHHHHHHHHhcC-CcCHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 2 3578999999999999999999843 34679999999999999999999987666443
No 5
>PRK13411 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=1.5e-104 Score=889.26 Aligned_cols=599 Identities=51% Similarity=0.803 Sum_probs=558.8
Q ss_pred CcEEEEEcCcceeEEEEEECCeeEEEecCCCCcccceEEEEcC-CcEEecHHHHHhHhhCcCchhhhhhHhcCCCCCChh
Q 043296 7 GKAIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTD-TERLIGDAAKNQVAMNPQNTVFDAKRLIGRRFSDPS 85 (650)
Q Consensus 7 ~~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~-~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~ 85 (650)
+.+||||||||||+||++++|.+.+++|..|+|.+||+|+|.+ ++++||..|+.+...+|.++++++|||||+.++++.
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 81 (653)
T PRK13411 2 GKVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDDTE 81 (653)
T ss_pred CcEEEEEeCcccEEEEEEECCEEEEEECCCCCccCceEEEEeCCCCEEEcHHHHHhhhhCcccchHHHHHHhCCCccchh
Confidence 3699999999999999999999999999999999999999975 589999999999999999999999999999998864
Q ss_pred hhhhcccCCeEEEeCCCCCceEEEEECCcceEecHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHH
Q 043296 86 VQSDMRHWPFKVASGPGDKPMIAVTYKGEEKRFSPEEISSMVLTKMKEIAEAYLGHAVKNAVVTVPAYFNDSQRQATKDA 165 (650)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A 165 (650)
.....+||.++...++...+.+ . +..++|+++++++|++|++.|+.++|.++.++|||||++|++.||+++++|
T Consensus 82 --~~~~~~~~~~v~~~~~~~~~~i--~--~~~~~peei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~A 155 (653)
T PRK13411 82 --EERSRVPYTCVKGRDDTVNVQI--R--GRNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDA 155 (653)
T ss_pred --HHhhcCCceEEecCCCceEEEE--C--CEEECHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCcHHHHHHHHH
Confidence 3457899998877666555544 2 367999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeeecchhHHHHHhcccccccCCCCCceEEEEEeCCcceEEEEEEEeCCEEEEEEeeCCCCCChhHHHHHHHH
Q 043296 166 GAIAGLNVMRIINEPTAAAIAYGLDKKASRTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVN 245 (650)
Q Consensus 166 a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~ 245 (650)
|++|||++++|++||+|||++|++.... .+.++||||+||||||+|++++.++.++++++.++.++||++||..|++
T Consensus 156 a~~AGl~v~~li~EPtAAAl~y~~~~~~---~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~at~gd~~LGG~dfD~~l~~ 232 (653)
T PRK13411 156 GTIAGLEVLRIINEPTAAALAYGLDKQD---QEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVD 232 (653)
T ss_pred HHHcCCCeEEEecchHHHHHHhcccccC---CCCEEEEEEcCCCeEEEEEEEEeCCEEEEEEEecCCCcCHHHHHHHHHH
Confidence 9999999999999999999999886542 4678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHccCCCceEEEEccccc----CeeEEEEEcHHHHHHHHHHHHhHHHH
Q 043296 246 HFVAEFRRKHKKDISGNARALRRLRTACERAKRTLSSTTQTTIEIDSLYE----GIDFYATITRARFEELNMDLFRKCME 321 (650)
Q Consensus 246 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~i~~~~~----~~~~~~~itr~~fe~~~~~~~~~i~~ 321 (650)
|+.++|..+++.++..+++.+.+|+.+||++|+.||.+..+.+.++.+.. +.++.+.|||++||++|+|+++++..
T Consensus 233 ~l~~~f~~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~~i~i~~~~~d~~~~~~~~~~itR~~fe~l~~~l~~~~~~ 312 (653)
T PRK13411 233 WLVENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKFEELTKDLVEATIE 312 (653)
T ss_pred HHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHH
Confidence 99999999988888889999999999999999999999999998887643 25788999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCeEEEEcCccCcHHHHHHHHhhhCCccccccCCcchhHHhHHHHHHHHHcCCCCccccceEEEe
Q 043296 322 PVEKCLRDSKIDKSLVHDIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGDQKVQDLLLLD 401 (650)
Q Consensus 322 ~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~ 401 (650)
+|+++|+++++.+.+|+.|+||||+||+|+|++.|++.|++..+..++||++|||+|||++|+++++. ++++.+.|
T Consensus 313 ~i~~~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l~~~----~~~~~~~d 388 (653)
T PRK13411 313 PMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGE----VKDLLLLD 388 (653)
T ss_pred HHHHHHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhhcCC----ccceeeee
Confidence 99999999999999999999999999999999999999976788889999999999999999999864 67899999
Q ss_pred eccccceEEeeCCEEEEEEeCCCCCCccceeeeeecccCcceEEEEeeccccccccCCcceeEEEecCCCCCCCCCceeE
Q 043296 402 VTPLSLGIETAGGVMTTLIPRNTTVPAKKEQVFSTYADNQTSVLIQVYEGERARTKDNNLLGTFELKGIPPAPRGVPQIN 481 (650)
Q Consensus 402 ~~~~~~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~~~~~i~ 481 (650)
++|++||+++.++.+.+||+||++||++++++|++..|+|+.+.|.+|||++....+|..||.|.|.++|+.+.|.++|+
T Consensus 389 v~p~slgi~~~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~ 468 (653)
T PRK13411 389 VTPLSLGIETLGEVFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIE 468 (653)
T ss_pred cccceeeEEecCCceEEEEECCCcccceeeEEEEeccCCCeEEEEEEEEecCcccccCceeeEEEEcCCCCCCCCCccEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998999
Q ss_pred EEEEEcCCceEEEEEeecccCceeeEEEecCCCCCCHHHHHHHHHHHhhhhHHhHHHHHHHHHHHhHHHHHHHHHhhccc
Q 043296 482 VCFDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEDIERMVQEAEKYKAEDEQVKKKVEAKNKLENYAYSMRNTVKD 561 (650)
Q Consensus 482 v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~ls~~e~~~~~~~~~~~~~~d~~~~~~~~akN~LE~~iy~~r~~L~~ 561 (650)
|+|++|.||+|+|++.+..+++...+.+.+. .+||+++++++++++.++..+|+.++++.++||+||+|||.+|+.|++
T Consensus 469 v~f~id~~Gil~v~a~d~~t~~~~~~~i~~~-~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~~ 547 (653)
T PRK13411 469 VSFEIDVNGILKVSAQDQGTGREQSIRITNT-GGLSSNEIERMRQEAEKYAEEDRRRKQLIELKNQADSLLYSYESTLKE 547 (653)
T ss_pred EEEEECCCCeEEEEEeeccCCceEeeEEecc-ccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988888764 569999999999999999999999999999999999999999999975
Q ss_pred hhhhcccCHHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHHhHHHHHHHHhcCCCC
Q 043296 562 DKVAGKLAAADKQKIEKAVDETVEWLDGNQLAEVDEFEDKLKELEGLCNPIIAKMYQGDGG 622 (650)
Q Consensus 562 ~~~~~~~~~~~~~~i~~~l~e~~~WL~~~~~a~~~~~~~kl~eL~~~~~~i~~r~~e~~~~ 622 (650)
+..++++++++++.+.++++++||+++ +++.++|++++++|++.+.++..++++++++
T Consensus 548 --~~~~~~~~er~~i~~~l~~~~~wL~~~-~~~~~~~~~~~~el~~~~~~i~~~~y~~~~~ 605 (653)
T PRK13411 548 --NGELISEELKQRAEQKVEQLEAALTDP-NISLEELKQQLEEFQQALLAIGAEVYQQGGS 605 (653)
T ss_pred --hhccCCHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 678999999999999999999999984 4689999999999999999999999886643
No 6
>PRK13410 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=3.4e-104 Score=883.17 Aligned_cols=598 Identities=46% Similarity=0.753 Sum_probs=557.0
Q ss_pred CcEEEEEcCcceeEEEEEECCeeEEEecCCCCcccceEEEEc-CCcEEecHHHHHhHhhCcCchhhhhhHhcCCCCCChh
Q 043296 7 GKAIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPQNTVFDAKRLIGRRFSDPS 85 (650)
Q Consensus 7 ~~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~-~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~ 85 (650)
..+||||||||||+||++++|.+.++.|..|++.+||+|+|. ++++++|..|+.++..+|.++++++||+||+++.+
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~~~-- 79 (668)
T PRK13410 2 GRIVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKRFIGRRYDE-- 79 (668)
T ss_pred CcEEEEEeCCCcEEEEEEECCeEEEEECCCCCccCceEEEEeCCCCEEECHHHHHhhHhCccceehHHhhhhCCCchh--
Confidence 469999999999999999999999999999999999999997 46899999999999999999999999999999865
Q ss_pred hhhhcccCCeEEEeCCCCCceEEEEECCcceEecHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHH
Q 043296 86 VQSDMRHWPFKVASGPGDKPMIAVTYKGEEKRFSPEEISSMVLTKMKEIAEAYLGHAVKNAVVTVPAYFNDSQRQATKDA 165 (650)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A 165 (650)
++.....+||.+...+++...+.+. ..++.++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++|
T Consensus 80 ~~~~~~~~~~~v~~~~~g~~~i~~~--~~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~A 157 (668)
T PRK13410 80 LDPESKRVPYTIRRNEQGNVRIKCP--RLEREFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDA 157 (668)
T ss_pred hHHhhccCCeEEEECCCCcEEEEEe--cCCeEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHH
Confidence 4556678999998777766655543 34578999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeeecchhHHHHHhcccccccCCCCCceEEEEEeCCcceEEEEEEEeCCEEEEEEeeCCCCCChhHHHHHHHH
Q 043296 166 GAIAGLNVMRIINEPTAAAIAYGLDKKASRTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVN 245 (650)
Q Consensus 166 a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~ 245 (650)
|++|||+++++++||+|||++|+.... .+.++||||+||||||+|++++.++.++++++.++.++||.+||..|++
T Consensus 158 a~~AGl~v~~li~EPtAAAlayg~~~~----~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~~l~~ 233 (668)
T PRK13410 158 GRIAGLEVERILNEPTAAALAYGLDRS----SSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVD 233 (668)
T ss_pred HHHcCCCeEEEecchHHHHHHhccccC----CCCEEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhHHHHHHHH
Confidence 999999999999999999999988653 4679999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHccCCCceEEEEcccccC----eeEEEEEcHHHHHHHHHHHHhHHHH
Q 043296 246 HFVAEFRRKHKKDISGNARALRRLRTACERAKRTLSSTTQTTIEIDSLYEG----IDFYATITRARFEELNMDLFRKCME 321 (650)
Q Consensus 246 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~i~~~~~~----~~~~~~itr~~fe~~~~~~~~~i~~ 321 (650)
|+.++|.++++.++..+++++.+|+.+||++|+.||.+..+.+.++.+..+ .++...|||++||++|+++++++..
T Consensus 234 ~l~~~f~~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~FE~l~~~l~~r~~~ 313 (668)
T PRK13410 234 WLAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQFESLCGDLLDRLLR 313 (668)
T ss_pred HHHHHHHhhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeecCCCCCeeEEEEECHHHHHHHHHHHHHHHHH
Confidence 999999999998888889999999999999999999999999988876543 4788999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCeEEEEcCccCcHHHHHHHHhhhCCccccccCCcchhHHhHHHHHHHHHcCCCCccccceEEEe
Q 043296 322 PVEKCLRDSKIDKSLVHDIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGDQKVQDLLLLD 401 (650)
Q Consensus 322 ~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~ 401 (650)
+|+++|+++++++.+|+.|+||||+||||+|++.|++.| +.++...+||++|||+|||++|+++++. .+++.+.|
T Consensus 314 ~i~~~L~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~f-g~~~~~~~npdeaVA~GAAi~aa~ls~~----~~~~~l~D 388 (668)
T PRK13410 314 PVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLI-PREPNQNVNPDEVVAVGAAIQAGILAGE----LKDLLLLD 388 (668)
T ss_pred HHHHHHHHcCCChhhCcEEEEECCccccHHHHHHHHHHc-CCCcccCCCCchHHHHhHHHHHHhhccc----ccceeEEe
Confidence 999999999999999999999999999999999999999 4778889999999999999999999863 67899999
Q ss_pred eccccceEEeeCCEEEEEEeCCCCCCccceeeeeecccCcceEEEEeeccccccccCCcceeEEEecCCCCCCCCCceeE
Q 043296 402 VTPLSLGIETAGGVMTTLIPRNTTVPAKKEQVFSTYADNQTSVLIQVYEGERARTKDNNLLGTFELKGIPPAPRGVPQIN 481 (650)
Q Consensus 402 ~~~~~~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~~~~~i~ 481 (650)
++|+++|+++.+|.+.+|||+|++||++++.+|++..|+|+.+.|.+|||++....+|..||+|.|.++|+.+.|.++|+
T Consensus 389 v~p~slgie~~~g~~~~li~rnt~iP~~~~~~f~t~~dnq~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~I~ 468 (668)
T PRK13410 389 VTPLSLGLETIGGVMKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQVQ 468 (668)
T ss_pred eccccccceecCCeeEEEEeCCCcccccccccceeccCCCcEEEEEEEeeccccccCCceEEEEEEeCCCCCCCCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCceEEEEEeecccCceeeEEEecCCCCCCHHHHHHHHHHHhhhhHHhHHHHHHHHHHHhHHHHHHHHHhhccc
Q 043296 482 VCFDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEDIERMVQEAEKYKAEDEQVKKKVEAKNKLENYAYSMRNTVKD 561 (650)
Q Consensus 482 v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~ls~~e~~~~~~~~~~~~~~d~~~~~~~~akN~LE~~iy~~r~~L~~ 561 (650)
|+|++|.||+|+|++.+..||++..++|... .+||.++++++++++.++..+|+.++++.++||+||+|||.+|++|.+
T Consensus 469 v~f~id~nGiL~V~a~d~~tg~~~~~~i~~~-~~ls~~ei~~~~~~~~~~~~~d~~~~~~~e~kn~~e~~i~~~~~~l~~ 547 (668)
T PRK13410 469 VAFDIDANGILQVSATDRTTGREQSVTIQGA-STLSEQEVNRMIQEAEAKADEDRRRRERIEKRNRALTLIAQAERRLRD 547 (668)
T ss_pred EEEEECCCcEEEEEEEEcCCCceeeeeeccc-ccCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999988888754 679999999999999999999999999999999999999999999965
Q ss_pred --hhhhcccCHHHHHHHHHHHHHHHHHHcCCC-CcCHHHHHHHHHHHHHhHHHHHHHHhc
Q 043296 562 --DKVAGKLAAADKQKIEKAVDETVEWLDGNQ-LAEVDEFEDKLKELEGLCNPIIAKMYQ 618 (650)
Q Consensus 562 --~~~~~~~~~~~~~~i~~~l~e~~~WL~~~~-~a~~~~~~~kl~eL~~~~~~i~~r~~e 618 (650)
..+..++++++++++...++++++||+++. +...+.|++++++|+.+..+|..|+.|
T Consensus 548 ~~~~~~~~~~~~~~~~~~~~l~~~~~wL~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 607 (668)
T PRK13410 548 AALEFGPYFAERQRRAVESAMRDVQDSLEQDDDRELDLAVADLQEALYGLNREVRAEYKE 607 (668)
T ss_pred hhhhhhccCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 358899999999999999999999999874 346678888889999999999999998
No 7
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-106 Score=852.35 Aligned_cols=615 Identities=78% Similarity=1.149 Sum_probs=595.7
Q ss_pred CCCCCCCcEEEEEcCcceeEEEEEECCeeEEEecCCCCcccceEEEEcCCcEEecHHHHHhHhhCcCchhhhhhHhcCCC
Q 043296 1 MAAKTEGKAIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRR 80 (650)
Q Consensus 1 M~~~~~~~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~ 80 (650)
|+......+||||||||+++++++.++.++++.|..|++.+||+|+|.++++++|.+|..+...+|.++++++||++|+.
T Consensus 1 ~~~~~~~~aiGIdlGtT~s~v~v~~~~~v~iian~~g~rttPs~vaf~~~e~~vg~~a~~qv~~np~ntv~~~krliGr~ 80 (620)
T KOG0101|consen 1 KLATPESVAIGIDLGTTYSCVGVYQSGKVEIIANDQGNRTTPSVVAFTDTERLIGDAAKNQVARNPDNTVFDAKRLIGRF 80 (620)
T ss_pred CCCccccceeeEeccCccceeeeEcCCcceeeeccccCccccceeeecccccchhhhhhhhhhcCCcceeeehhhhcCcc
Confidence 45556778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhhhcccCCeEEEeCCCCCceEEEEECCcceEecHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHH
Q 043296 81 FSDPSVQSDMRHWPFKVASGPGDKPMIAVTYKGEEKRFSPEEISSMVLTKMKEIAEAYLGHAVKNAVVTVPAYFNDSQRQ 160 (650)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~ 160 (650)
++++.++.+++.|||.+....++.+.+.+.+.++.+.++|+++++++|.++++.++.+++..+.++|+|||+||++.||+
T Consensus 81 f~d~~v~~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peeiss~~L~klke~Ae~~Lg~~v~~aviTVPa~F~~~Qr~ 160 (620)
T KOG0101|consen 81 FDDPEVQSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEISSMVLTKLKETAEAYLGKTVKKAVVTVPAYFNDSQRA 160 (620)
T ss_pred ccchhhHhHhhcCCcccccccCCcceEEecccccceeeeeeeeeehhccccHHHHHHHhcCceeeEEEEecCCcCHHHHH
Confidence 99999999999999999977888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCceeeecchhHHHHHhcccccccCCCCCceEEEEEeCCcceEEEEEEEeCCEEEEEEeeCCCCCChhHHH
Q 043296 161 ATKDAGAIAGLNVMRIINEPTAAAIAYGLDKKASRTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFD 240 (650)
Q Consensus 161 ~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d 240 (650)
++.+|+.+|||+++++++||+|||++|++++. .....+|+|+|+||||||++++.+.++.+.+.++.++.++||++||
T Consensus 161 at~~A~~iaGl~vlrii~EPtAaalAygl~k~--~~~~~~VlI~DlGggtfdvs~l~i~gG~~~vkat~gd~~lGGedf~ 238 (620)
T KOG0101|consen 161 ATKDAALIAGLNVLRIINEPTAAALAYGLDKK--VLGERNVLIFDLGGGTFDVSVLSLEGGIFEVKATAGDTHLGGEDFD 238 (620)
T ss_pred HHHHHHHhcCCceeeeecchHHHHHHhhcccc--ccceeeEEEEEcCCCceeeeeEEeccchhhhhhhcccccccchhhh
Confidence 99999999999999999999999999997776 3567889999999999999999999998899999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHccCCCceEEEEcccccCeeEEEEEcHHHHHHHHHHHHhHHH
Q 043296 241 NRLVNHFVAEFRRKHKKDISGNARALRRLRTACERAKRTLSSTTQTTIEIDSLYEGIDFYATITRARFEELNMDLFRKCM 320 (650)
Q Consensus 241 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~fe~~~~~~~~~i~ 320 (650)
+.|.+|+..+|+++++.++..+++++++|+.+||.+|+.||....+.+.+++|++|.++...|||.+||++|.+++.++.
T Consensus 239 ~~l~~h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i~vdsL~~g~d~~~~itrarfe~l~~dlf~~~~ 318 (620)
T KOG0101|consen 239 NKLVNHFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRSTL 318 (620)
T ss_pred HHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhcccccceeccchhhccccccceeehhhhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEEcCccCcHHHHHHHHhhhCCccccccCCcchhHHhHHHHHHHHHcCCCCccccceEEE
Q 043296 321 EPVEKCLRDSKIDKSLVHDIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGDQKVQDLLLL 400 (650)
Q Consensus 321 ~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~ 400 (650)
.++.++|+++.+++.+|+.|+||||++|+|.++..++++|+++.+...+|||++||+|||++|+.++|.......++.+.
T Consensus 319 ~~v~~~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~~~~~~~l~li 398 (620)
T KOG0101|consen 319 EPVEKALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSLNIQDLLLI 398 (620)
T ss_pred HHHHHHHHhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhccCCccccccceeee
Confidence 99999999999999999999999999999999999999998889999999999999999999999998766667899999
Q ss_pred eeccccceEEeeCCEEEEEEeCCCCCCccceeeeeecccCcceEEEEeeccccccccCCcceeEEEecCCCCCCCCCcee
Q 043296 401 DVTPLSLGIETAGGVMTTLIPRNTTVPAKKEQVFSTYADNQTSVLIQVYEGERARTKDNNLLGTFELKGIPPAPRGVPQI 480 (650)
Q Consensus 401 ~~~~~~~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~~~~~i 480 (650)
|+.|.++||++.++.|.++|++|+.+|+.++++|+++.|||+.+.|.||+|++..+++|..+|.|.|.|+||+|+|+|.|
T Consensus 399 d~~pl~~gve~a~~~~~~~i~~~t~~P~~k~~~ftt~~dnQp~V~I~VyEger~~~kdn~~lg~feL~gippaprgvp~I 478 (620)
T KOG0101|consen 399 DVAPLSLGVETAGGVFTVLIPRNTSIPTKKTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQI 478 (620)
T ss_pred ecccccccccccCCcceeeeecccccceeeeeeeeeecCCCCceeEEEEeccccccccccccceeeecCCCccccCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEcCCceEEEEEeecccCceeeEEEecCCCCCCHHHHHHHHHHHhhhhHHhHHHHHHHHHHHhHHHHHHHHHhhcc
Q 043296 481 NVCFDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEDIERMVQEAEKYKAEDEQVKKKVEAKNKLENYAYSMRNTVK 560 (650)
Q Consensus 481 ~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~ls~~e~~~~~~~~~~~~~~d~~~~~~~~akN~LE~~iy~~r~~L~ 560 (650)
+++|.+|.||+|.|++.+..+|+...++|++..++||.++|+++..+.+++..+|...+++.+++|.||+|+|.++..++
T Consensus 479 evtfdiD~ngiL~Vta~d~stgK~~~i~i~n~~grls~~~Ierm~~ea~~~~~~d~~~~~~v~~~~~le~~~f~~~~~~~ 558 (620)
T KOG0101|consen 479 EVTFDIDANGILNVTAVDKSTGKENKITITNDKGRLSKEEIERMVQEAEKYKAEDEKQKDKVAAKNSLESYAFNMKATVE 558 (620)
T ss_pred eEEEecCCCcEEEEeeccccCCccceEEEecccceeehhhhhhhhhhhhhccccCHHHHHHHHHHhhHHHHHHhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred chhhhcccCHHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHHhHHHHHHHHhcC
Q 043296 561 DDKVAGKLAAADKQKIEKAVDETVEWLDGNQLAEVDEFEDKLKELEGLCNPIIAKMYQG 619 (650)
Q Consensus 561 ~~~~~~~~~~~~~~~i~~~l~e~~~WL~~~~~a~~~~~~~kl~eL~~~~~~i~~r~~e~ 619 (650)
+.. ..++++++.++..+++++..||+.+..+.+++|+.|.++|+..++||..+++.+
T Consensus 559 ~~~--~~i~~~~~~~~~~~~~~~i~wl~~~~~~~~~e~e~k~~el~~~~~p~~~~~~~~ 615 (620)
T KOG0101|consen 559 DEK--GKINEEDKQKILDKCNEVINWLDKNQLAEKEEFEHKQKELELVCNPIISKLYQG 615 (620)
T ss_pred hhc--cccChhhhhhHHHHHHHHHHHhhhcccccccHHHHHHHHHHhhccHHHHhhhcc
Confidence 753 789999999999999999999999988889999999999999999999998875
No 8
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=100.00 E-value=8.3e-104 Score=883.36 Aligned_cols=598 Identities=52% Similarity=0.845 Sum_probs=561.4
Q ss_pred CCcEEEEEcCcceeEEEEEECCeeEEEecCCCCcccceEEEEcC-CcEEecHHHHHhHhhCcCchhhhhhHhcCCCCCCh
Q 043296 6 EGKAIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTD-TERLIGDAAKNQVAMNPQNTVFDAKRLIGRRFSDP 84 (650)
Q Consensus 6 ~~~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~-~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~ 84 (650)
+..+||||||||||+||++++|.+++++|..|+|.+||+|+|.+ +++++|..|+.+...+|.++++++||+||+.++++
T Consensus 40 ~~~viGIDlGTt~s~va~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~ 119 (663)
T PTZ00400 40 TGDIVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIGRRYDED 119 (663)
T ss_pred cCcEEEEEECcccEEEEEEeCCeeEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhHHhCCcceehhhhhhcCCCcCcH
Confidence 44699999999999999999999999999999999999999974 68999999999999999999999999999999999
Q ss_pred hhhhhcccCCeEEEeCCCCCceEEEEECCcceEecHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHH
Q 043296 85 SVQSDMRHWPFKVASGPGDKPMIAVTYKGEEKRFSPEEISSMVLTKMKEIAEAYLGHAVKNAVVTVPAYFNDSQRQATKD 164 (650)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~ 164 (650)
.++...+.+||.++...++...+.+ . +..++|+++++++|++|++.|+.+++.++.++|||||++|++.||+++++
T Consensus 120 ~~~~~~~~~p~~~~~~~~~~~~~~~--~--~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~ 195 (663)
T PTZ00400 120 ATKKEQKILPYKIVRASNGDAWIEA--Q--GKKYSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKD 195 (663)
T ss_pred HHHhhhccCCeEEEecCCCceEEEE--C--CEEECHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHH
Confidence 9999999999999877776665544 2 46899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceeeecchhHHHHHhcccccccCCCCCceEEEEEeCCcceEEEEEEEeCCEEEEEEeeCCCCCChhHHHHHHH
Q 043296 165 AGAIAGLNVMRIINEPTAAAIAYGLDKKASRTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLV 244 (650)
Q Consensus 165 Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~ 244 (650)
||++|||+++++++||+|||++|+.... .+.++||||+||||||+|++++.++.++++++.|+.++||++||..|+
T Consensus 196 Aa~~AGl~v~~li~EptAAAlay~~~~~----~~~~vlV~DlGgGT~DvSv~~~~~g~~~v~a~~gd~~LGG~d~D~~l~ 271 (663)
T PTZ00400 196 AGKIAGLDVLRIINEPTAAALAFGMDKN----DGKTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRIL 271 (663)
T ss_pred HHHHcCCceEEEeCchHHHHHHhccccC----CCcEEEEEeCCCCeEEEEEEEecCCeeEEEecccCCCcCHHHHHHHHH
Confidence 9999999999999999999999987653 478999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHccCCCceEEEEcccccC----eeEEEEEcHHHHHHHHHHHHhHHH
Q 043296 245 NHFVAEFRRKHKKDISGNARALRRLRTACERAKRTLSSTTQTTIEIDSLYEG----IDFYATITRARFEELNMDLFRKCM 320 (650)
Q Consensus 245 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~i~~~~~~----~~~~~~itr~~fe~~~~~~~~~i~ 320 (650)
+|+.++|.++++.++..+++.+.+|+.+||++|+.||.+..+.+.++.+..+ .++.+.|||++||++|+|+++++.
T Consensus 272 ~~l~~~f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~efe~l~~~l~~~~~ 351 (663)
T PTZ00400 272 NYLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAKLEELTHDLLKKTI 351 (663)
T ss_pred HHHHHHhhhhcCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEEEeeccCCCCceEEEEEECHHHHHHHHHHHHHHHH
Confidence 9999999999988888899999999999999999999999888888876543 578999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEEcCccCcHHHHHHHHhhhCCccccccCCcchhHHhHHHHHHHHHcCCCCccccceEEE
Q 043296 321 EPVEKCLRDSKIDKSLVHDIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGDQKVQDLLLL 400 (650)
Q Consensus 321 ~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~ 400 (650)
.+|+++|+++++.+.+|+.|+||||+||+|+|++.|++.|+ .++....||+++||+|||++|+++++. .+++.+.
T Consensus 352 ~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f~-~~~~~~~npdeaVA~GAAi~aa~l~~~----~~~~~~~ 426 (663)
T PTZ00400 352 EPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFG-KEPSKGVNPDEAVAMGAAIQAGVLKGE----IKDLLLL 426 (663)
T ss_pred HHHHHHHHHcCCCHHHCcEEEEECCccCChHHHHHHHHHhC-CCcccCCCCccceeeccHHHHHhhcCC----ccceEEE
Confidence 99999999999999999999999999999999999999994 678889999999999999999999863 5789999
Q ss_pred eeccccceEEeeCCEEEEEEeCCCCCCccceeeeeecccCcceEEEEeeccccccccCCcceeEEEecCCCCCCCCCcee
Q 043296 401 DVTPLSLGIETAGGVMTTLIPRNTTVPAKKEQVFSTYADNQTSVLIQVYEGERARTKDNNLLGTFELKGIPPAPRGVPQI 480 (650)
Q Consensus 401 ~~~~~~~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~~~~~i 480 (650)
|++|++||+++.+|.+.+|||+|++||++++++|++..|+|+.+.|.||||++..+.+|..||+|.|.++|+.+.|.++|
T Consensus 427 dv~p~slgi~~~~g~~~~ii~~~t~iP~~~~~~f~~~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i 506 (663)
T PTZ00400 427 DVTPLSLGIETLGGVFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRGVPQI 506 (663)
T ss_pred eccccceEEEecCCeeEEEEecCccCCccceeeeeeccCCCceEEEEEEEecCccCCcCceeEEEEEcCCCCCCCCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999899
Q ss_pred EEEEEEcCCceEEEEEeecccCceeeEEEecCCCCCCHHHHHHHHHHHhhhhHHhHHHHHHHHHHHhHHHHHHHHHhhcc
Q 043296 481 NVCFDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEDIERMVQEAEKYKAEDEQVKKKVEAKNKLENYAYSMRNTVK 560 (650)
Q Consensus 481 ~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~ls~~e~~~~~~~~~~~~~~d~~~~~~~~akN~LE~~iy~~r~~L~ 560 (650)
+|+|.+|.||+|+|++.+..+++...++++.. .+||+++++++++++.++..+|+..+++.++||+||+|||.+|+.|+
T Consensus 507 ~v~f~id~~Gil~v~a~~~~~~~~~~~~i~~~-~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~ 585 (663)
T PTZ00400 507 EVTFDVDANGIMNISAVDKSTGKKQEITIQSS-GGLSDEEIEKMVKEAEEYKEQDEKKKELVDAKNEAETLIYSVEKQLS 585 (663)
T ss_pred EEEEEECCCCCEEEEEEeccCCcEEEEEeecc-ccccHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988888764 56999999999999999999999999999999999999999999997
Q ss_pred chhhhcccCHHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHHhHHHHHHHHhcCCCC
Q 043296 561 DDKVAGKLAAADKQKIEKAVDETVEWLDGNQLAEVDEFEDKLKELEGLCNPIIAKMYQGDGG 622 (650)
Q Consensus 561 ~~~~~~~~~~~~~~~i~~~l~e~~~WL~~~~~a~~~~~~~kl~eL~~~~~~i~~r~~e~~~~ 622 (650)
+ +...+++++++++.+.++++++||+++ +.++|++++++|++++.++..++++++++
T Consensus 586 e--~~~~~s~~ere~i~~~l~~~~~WL~~~---d~~~i~~k~~eL~~~l~~l~~k~y~~~~~ 642 (663)
T PTZ00400 586 D--LKDKISDADKDELKQKITKLRSTLSSE---DVDSIKDKTKQLQEASWKISQQAYKQGNS 642 (663)
T ss_pred H--HhhhCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 4 888999999999999999999999986 78999999999999999999998776533
No 9
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=100.00 E-value=8.1e-103 Score=877.08 Aligned_cols=594 Identities=53% Similarity=0.851 Sum_probs=557.7
Q ss_pred CcEEEEEcCcceeEEEEEECCeeEEEecCCCCcccceEEEEc-CCcEEecHHHHHhHhhCcCchhhhhhHhcCCCCCChh
Q 043296 7 GKAIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPQNTVFDAKRLIGRRFSDPS 85 (650)
Q Consensus 7 ~~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~-~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~ 85 (650)
+.+||||||||||++|++++|.++++.|..|++.+||+|+|. ++++++|..|..+...+|.++++++|||||+. ++.
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~--~~~ 79 (627)
T PRK00290 2 GKIIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRR--DEE 79 (627)
T ss_pred CcEEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhCCC--chH
Confidence 369999999999999999999999999999999999999997 67899999999999999999999999999998 677
Q ss_pred hhhhcccCCeEEEeCCCCCceEEEEECCcceEecHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHH
Q 043296 86 VQSDMRHWPFKVASGPGDKPMIAVTYKGEEKRFSPEEISSMVLTKMKEIAEAYLGHAVKNAVVTVPAYFNDSQRQATKDA 165 (650)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A 165 (650)
++...+.+||.++...++...+.+ . +..++|+++++++|++|++.|+.+++.++.++|||||++|++.||+++++|
T Consensus 80 ~~~~~~~~p~~~~~~~~~~~~~~~--~--~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~A 155 (627)
T PRK00290 80 VQKDIKLVPYKIVKADNGDAWVEI--D--GKKYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDA 155 (627)
T ss_pred HHHHhhcCCeEEEEcCCCceEEEE--C--CEEEcHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHH
Confidence 888889999999977666555433 3 368999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeeecchhHHHHHhcccccccCCCCCceEEEEEeCCcceEEEEEEEeCCEEEEEEeeCCCCCChhHHHHHHHH
Q 043296 166 GAIAGLNVMRIINEPTAAAIAYGLDKKASRTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVN 245 (650)
Q Consensus 166 a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~ 245 (650)
|+.|||++++|++||+|||++|++... .+.++||||+||||||+|++++.++.++++++.++.++||.+||..|++
T Consensus 156 a~~AGl~v~~li~EptAAAl~y~~~~~----~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~ 231 (627)
T PRK00290 156 GKIAGLEVLRIINEPTAAALAYGLDKK----GDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRIID 231 (627)
T ss_pred HHHcCCceEEEecchHHHHHHhhhccC----CCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHHHHHHHHH
Confidence 999999999999999999999987653 4688999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHccCCCceEEEEcccccC----eeEEEEEcHHHHHHHHHHHHhHHHH
Q 043296 246 HFVAEFRRKHKKDISGNARALRRLRTACERAKRTLSSTTQTTIEIDSLYEG----IDFYATITRARFEELNMDLFRKCME 321 (650)
Q Consensus 246 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~i~~~~~~----~~~~~~itr~~fe~~~~~~~~~i~~ 321 (650)
|+.++|+.+++.++..+++.+.+|+.+||++|+.||.+..+.+.++.+..+ .++.+.|||++|+++|+|+++++..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~~fe~l~~~l~~~~~~ 311 (627)
T PRK00290 232 YLADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRAKFEELTEDLVERTIE 311 (627)
T ss_pred HHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeecccCCCCCeEEEEEECHHHHHHHHHHHHHHHHH
Confidence 999999999998888899999999999999999999999999988876543 6788999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCeEEEEcCccCcHHHHHHHHhhhCCccccccCCcchhHHhHHHHHHHHHcCCCCccccceEEEe
Q 043296 322 PVEKCLRDSKIDKSLVHDIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGDQKVQDLLLLD 401 (650)
Q Consensus 322 ~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~ 401 (650)
+|+++|+++++++.+|+.|+||||+||+|+|++.|++.| +.++..++||++|||+|||++|+.+++. .+++.+.|
T Consensus 312 ~i~~~l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f-g~~~~~~~npdeava~GAa~~aa~l~~~----~~~~~~~d 386 (627)
T PRK00290 312 PCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFF-GKEPNKGVNPDEVVAIGAAIQGGVLAGD----VKDVLLLD 386 (627)
T ss_pred HHHHHHHHcCCChhhCcEEEEECCcCCChHHHHHHHHHh-CCCCCcCcCChHHHHHhHHHHHHHhcCC----ccceeeee
Confidence 999999999999999999999999999999999999999 5778889999999999999999999863 67899999
Q ss_pred eccccceEEeeCCEEEEEEeCCCCCCccceeeeeecccCcceEEEEeeccccccccCCcceeEEEecCCCCCCCCCceeE
Q 043296 402 VTPLSLGIETAGGVMTTLIPRNTTVPAKKEQVFSTYADNQTSVLIQVYEGERARTKDNNLLGTFELKGIPPAPRGVPQIN 481 (650)
Q Consensus 402 ~~~~~~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~~~~~i~ 481 (650)
++|++||++..++.+.+|||+|+++|++++++|++..|+|+.+.|.+|+|++....+|..||+|.|.++|+.++|.++|+
T Consensus 387 ~~~~slgi~~~~~~~~~ii~~~t~~P~~~~~~f~~~~d~q~~~~i~v~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~ 466 (627)
T PRK00290 387 VTPLSLGIETLGGVMTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRGVPQIE 466 (627)
T ss_pred ccceEEEEEecCCeEEEEecCCCcCCccceEEEEecCCCcceEEEEEEEecccccCcCceEEEEEECCCCCCCCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999889999999999999999999988999
Q ss_pred EEEEEcCCceEEEEEeecccCceeeEEEecCCCCCCHHHHHHHHHHHhhhhHHhHHHHHHHHHHHhHHHHHHHHHhhccc
Q 043296 482 VCFDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEDIERMVQEAEKYKAEDEQVKKKVEAKNKLENYAYSMRNTVKD 561 (650)
Q Consensus 482 v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~ls~~e~~~~~~~~~~~~~~d~~~~~~~~akN~LE~~iy~~r~~L~~ 561 (650)
++|.+|.||+|+|++.+..+++..++++... .+|+.++++++++++.++..+|+..+++.+++|+||+|+|.+|+.|++
T Consensus 467 v~f~~d~~gil~v~a~~~~~~~~~~~~i~~~-~~ls~e~i~~~~~~~~~~~~~d~~~~~~~eakN~le~~i~~~~~~l~~ 545 (627)
T PRK00290 467 VTFDIDANGIVHVSAKDKGTGKEQSITITAS-SGLSDEEIERMVKDAEANAEEDKKRKELVEARNQADSLIYQTEKTLKE 545 (627)
T ss_pred EEEEECCCceEEEEEEEccCCceeEEEeccc-cccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888764 569999999999999999999999999999999999999999999973
Q ss_pred hhhhcccCHHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHHhHHHHHHHHhcCCC
Q 043296 562 DKVAGKLAAADKQKIEKAVDETVEWLDGNQLAEVDEFEDKLKELEGLCNPIIAKMYQGDG 621 (650)
Q Consensus 562 ~~~~~~~~~~~~~~i~~~l~e~~~WL~~~~~a~~~~~~~kl~eL~~~~~~i~~r~~e~~~ 621 (650)
+..++++++++++.+.++++++||+++ +.++|++++++|+++++++..|++++++
T Consensus 546 --~~~~~~~~e~~~i~~~l~~~~~wL~~~---~~~~i~~k~~~L~~~~~~~~~~~~~~~~ 600 (627)
T PRK00290 546 --LGDKVPADEKEKIEAAIKELKEALKGE---DKEAIKAKTEELTQASQKLGEAMYQQAQ 600 (627)
T ss_pred --HhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 788999999999999999999999976 7899999999999999999999987553
No 10
>CHL00094 dnaK heat shock protein 70
Probab=100.00 E-value=2.2e-100 Score=854.38 Aligned_cols=594 Identities=52% Similarity=0.822 Sum_probs=553.2
Q ss_pred CcEEEEEcCcceeEEEEEECCeeEEEecCCCCcccceEEEEcC-CcEEecHHHHHhHhhCcCchhhhhhHhcCCCCCChh
Q 043296 7 GKAIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTD-TERLIGDAAKNQVAMNPQNTVFDAKRLIGRRFSDPS 85 (650)
Q Consensus 7 ~~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~-~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~ 85 (650)
..+||||||||||++|++++|.+++++|..|.+.+||+|+|.+ +++++|..|+.+...+|.++++++||+||+.+++
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~-- 79 (621)
T CHL00094 2 GKVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSE-- 79 (621)
T ss_pred CceEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCChHH--
Confidence 3699999999999999999999999999999999999999975 5799999999999999999999999999998865
Q ss_pred hhhhcccCCeEEEeCCCCCceEEEEECCcceEecHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHH
Q 043296 86 VQSDMRHWPFKVASGPGDKPMIAVTYKGEEKRFSPEEISSMVLTKMKEIAEAYLGHAVKNAVVTVPAYFNDSQRQATKDA 165 (650)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A 165 (650)
+....+.+||.+....++...+.+. ..+..++|+++++++|++|++.|+.+++.++.++|||||++|++.||+++++|
T Consensus 80 ~~~~~~~~~~~v~~~~~g~i~~~~~--~~~~~~s~eei~a~iL~~l~~~ae~~lg~~v~~~VItVPa~f~~~qR~a~~~A 157 (621)
T CHL00094 80 ISEEAKQVSYKVKTDSNGNIKIECP--ALNKDFSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDA 157 (621)
T ss_pred HHhhhhcCCeEEEECCCCCEEEEEe--cCCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 5566677999998766666555443 33467999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeeecchhHHHHHhcccccccCCCCCceEEEEEeCCcceEEEEEEEeCCEEEEEEeeCCCCCChhHHHHHHHH
Q 043296 166 GAIAGLNVMRIINEPTAAAIAYGLDKKASRTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVN 245 (650)
Q Consensus 166 a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~ 245 (650)
|+.|||+++++++||+|||++|+.... .+.++||||+||||||+|++++.++.++++++.++.++||++||..|++
T Consensus 158 a~~AGl~v~~li~EptAAAlay~~~~~----~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~ 233 (621)
T CHL00094 158 GKIAGLEVLRIINEPTAASLAYGLDKK----NNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVN 233 (621)
T ss_pred HHHcCCceEEEeccHHHHHHHhccccC----CCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHHHHH
Confidence 999999999999999999999987653 4678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHccCCCceEEEEccccc----CeeEEEEEcHHHHHHHHHHHHhHHHH
Q 043296 246 HFVAEFRRKHKKDISGNARALRRLRTACERAKRTLSSTTQTTIEIDSLYE----GIDFYATITRARFEELNMDLFRKCME 321 (650)
Q Consensus 246 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~i~~~~~----~~~~~~~itr~~fe~~~~~~~~~i~~ 321 (650)
|+.++|+++++.++..+++.+.+|+.+||++|+.||.+..+.+.++.+.. +.++...|||++||++|+|+++++..
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~~~~~ 313 (621)
T CHL00094 234 WLIKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAKFEELCSDLINRCRI 313 (621)
T ss_pred HHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeecccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHH
Confidence 99999999999888889999999999999999999999988888887653 25788899999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCeEEEEcCccCcHHHHHHHHhhhCCccccccCCcchhHHhHHHHHHHHHcCCCCccccceEEEe
Q 043296 322 PVEKCLRDSKIDKSLVHDIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGDQKVQDLLLLD 401 (650)
Q Consensus 322 ~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~ 401 (650)
+|+++|+++++.+.+|+.|+||||+||+|.|++.|++.|+ .++....||++|||+|||++|+.+++. .+++.+.|
T Consensus 314 ~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg-~~~~~~~~pdeava~GAA~~aa~ls~~----~~~~~~~d 388 (621)
T CHL00094 314 PVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLLG-KKPNQSVNPDEVVAIGAAVQAGVLAGE----VKDILLLD 388 (621)
T ss_pred HHHHHHHHcCCChhhCcEEEEECCccCChHHHHHHHHHhC-CCcCcCCCchhHHHhhhHHHHHHhcCC----ccceeeee
Confidence 9999999999999999999999999999999999999994 678889999999999999999999863 67899999
Q ss_pred eccccceEEeeCCEEEEEEeCCCCCCccceeeeeecccCcceEEEEeeccccccccCCcceeEEEecCCCCCCCCCceeE
Q 043296 402 VTPLSLGIETAGGVMTTLIPRNTTVPAKKEQVFSTYADNQTSVLIQVYEGERARTKDNNLLGTFELKGIPPAPRGVPQIN 481 (650)
Q Consensus 402 ~~~~~~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~~~~~i~ 481 (650)
++|++||++..++.+.+|||+|++||++++.+|++..|+|..+.|.+|||++....+|..||+|.|.++|+.+.|.++|+
T Consensus 389 ~~~~~lgi~~~~~~~~~ii~~~t~iP~~~~~~~~~~~~~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~~~~~~~g~~~i~ 468 (621)
T CHL00094 389 VTPLSLGVETLGGVMTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIE 468 (621)
T ss_pred eeceeeeeeccCCEEEEEEeCCCccceeeeEEEEeccCCCcEEEEEEEeeccccCCCCCEEEEEEEeCCCCCCCCCCcEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988999
Q ss_pred EEEEEcCCceEEEEEeecccCceeeEEEecCCCCCCHHHHHHHHHHHhhhhHHhHHHHHHHHHHHhHHHHHHHHHhhccc
Q 043296 482 VCFDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEDIERMVQEAEKYKAEDEQVKKKVEAKNKLENYAYSMRNTVKD 561 (650)
Q Consensus 482 v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~ls~~e~~~~~~~~~~~~~~d~~~~~~~~akN~LE~~iy~~r~~L~~ 561 (650)
++|++|.||+|+|++.+..+++...+++.+ ..+|++++++++++++.++..+|+..+++.+++|+||+|||.+|++|++
T Consensus 469 v~f~id~~Gil~v~~~~~~t~~~~~~~i~~-~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~le~~i~~~~~~l~~ 547 (621)
T CHL00094 469 VTFDIDANGILSVTAKDKGTGKEQSITIQG-ASTLPKDEVERMVKEAEKNAAEDKEKREKIDLKNQAESLCYQAEKQLKE 547 (621)
T ss_pred EEEEECCCCeEEEEEeeccCCceeeeeecc-chhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999999998888875 3569999999999999999999999999999999999999999999974
Q ss_pred hhhhcccCHHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHHhHHHHHHHHhcC
Q 043296 562 DKVAGKLAAADKQKIEKAVDETVEWLDGNQLAEVDEFEDKLKELEGLCNPIIAKMYQG 619 (650)
Q Consensus 562 ~~~~~~~~~~~~~~i~~~l~e~~~WL~~~~~a~~~~~~~kl~eL~~~~~~i~~r~~e~ 619 (650)
+..++++++++++.+.++++++||+++ +.+++++++++|++.++++..+++..
T Consensus 548 --~~~~~~~~~~~~~~~~l~~~~~wl~~~---~~~~~~~~~~~l~~~~~~~~~kl~~~ 600 (621)
T CHL00094 548 --LKDKISEEKKEKIENLIKKLRQALQND---NYESIKSLLEELQKALMEIGKEVYSS 600 (621)
T ss_pred --HhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888999999999999999999999986 66899999999999999999988773
No 11
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=100.00 E-value=3.1e-100 Score=854.06 Aligned_cols=589 Identities=56% Similarity=0.863 Sum_probs=549.0
Q ss_pred cEEEEEcCcceeEEEEEECCeeEEEecCCCCcccceEEEEcCC-cEEecHHHHHhHhhCcCchhhhhhHhcCCCCCChhh
Q 043296 8 KAIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPQNTVFDAKRLIGRRFSDPSV 86 (650)
Q Consensus 8 ~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~-~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~~ 86 (650)
.+||||||||||++|++++|.++++.|..|++.+||+|+|.++ ++++|..|+.+...+|.++++++||+||+.+ +.+
T Consensus 1 ~viGIDlGtt~s~va~~~~g~~~ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~--~~~ 78 (595)
T TIGR02350 1 KIIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRF--DEV 78 (595)
T ss_pred CEEEEEeCcccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCCc--hHH
Confidence 3899999999999999999999999999999999999999854 8999999999999999999999999999988 346
Q ss_pred hhhcccCCeEEEeCCCCCceEEEEECCcceEecHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHHH
Q 043296 87 QSDMRHWPFKVASGPGDKPMIAVTYKGEEKRFSPEEISSMVLTKMKEIAEAYLGHAVKNAVVTVPAYFNDSQRQATKDAG 166 (650)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa 166 (650)
+...+.+||.+ ..+++...+.+ . +..++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++||
T Consensus 79 ~~~~~~~~~~v-~~~~~~~~~~v--~--~~~~~peel~a~~L~~l~~~a~~~~~~~v~~~VItVPa~f~~~qR~a~~~Aa 153 (595)
T TIGR02350 79 TEEAKRVPYKV-VGDGGDVRVKV--D--GKEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAG 153 (595)
T ss_pred HHHhhcCCeeE-EcCCCceEEEE--C--CEEecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 67778899994 44555555544 3 4679999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeeecchhHHHHHhcccccccCCCCCceEEEEEeCCcceEEEEEEEeCCEEEEEEeeCCCCCChhHHHHHHHHH
Q 043296 167 AIAGLNVMRIINEPTAAAIAYGLDKKASRTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNH 246 (650)
Q Consensus 167 ~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~ 246 (650)
+.|||+++++++||+|||++|+.... ..+.++||||+||||||+|++++.++.++++++.++..+||.+||+.|++|
T Consensus 154 ~~AGl~v~~li~EptAAAl~y~~~~~---~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG~d~D~~l~~~ 230 (595)
T TIGR02350 154 KIAGLEVLRIINEPTAAALAYGLDKS---KKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDW 230 (595)
T ss_pred HHcCCceEEEecchHHHHHHHhhccc---CCCcEEEEEECCCCeEEEEEEEecCCeEEEEEecCCcccCchhHHHHHHHH
Confidence 99999999999999999999987653 257899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHccCCCceEEEEccccc----CeeEEEEEcHHHHHHHHHHHHhHHHHH
Q 043296 247 FVAEFRRKHKKDISGNARALRRLRTACERAKRTLSSTTQTTIEIDSLYE----GIDFYATITRARFEELNMDLFRKCMEP 322 (650)
Q Consensus 247 l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~i~~~~~----~~~~~~~itr~~fe~~~~~~~~~i~~~ 322 (650)
+.++|.++++.++..+++.+.+|+.+||++|+.||.+..+.+.++.+.. +.++.+.|||++|+++|+|+++++..+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~l~~~~~~~ 310 (595)
T TIGR02350 231 LADEFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFEELTADLVERTKEP 310 (595)
T ss_pred HHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEeeecccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHHH
Confidence 9999999999888888999999999999999999999999998887654 257889999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCeEEEEcCccCcHHHHHHHHhhhCCccccccCCcchhHHhHHHHHHHHHcCCCCccccceEEEee
Q 043296 323 VEKCLRDSKIDKSLVHDIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGDQKVQDLLLLDV 402 (650)
Q Consensus 323 i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~~ 402 (650)
|+++|+++++++.+|+.|+||||+||+|+|++.|++.|+ .++..+.||++|||+|||++|+.+++. ++++.+.|+
T Consensus 311 i~~~l~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~-~~~~~~~~pdeava~GAa~~aa~l~~~----~~~~~~~d~ 385 (595)
T TIGR02350 311 VRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFG-KEPNKSVNPDEVVAIGAAIQGGVLKGD----VKDVLLLDV 385 (595)
T ss_pred HHHHHHHcCCCHhHCcEEEEECCcccChHHHHHHHHHhC-CcccCCcCcHHHHHHHHHHHHHHhcCC----cccceeeec
Confidence 999999999999999999999999999999999999995 778889999999999999999999864 678999999
Q ss_pred ccccceEEeeCCEEEEEEeCCCCCCccceeeeeecccCcceEEEEeeccccccccCCcceeEEEecCCCCCCCCCceeEE
Q 043296 403 TPLSLGIETAGGVMTTLIPRNTTVPAKKEQVFSTYADNQTSVLIQVYEGERARTKDNNLLGTFELKGIPPAPRGVPQINV 482 (650)
Q Consensus 403 ~~~~~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~~~~~i~v 482 (650)
+|++||++..++.+.+||++|+++|++++++|++..|+|..+.|.+|+|++....+|..||++.|.++|+.++|.++|++
T Consensus 386 ~~~~igi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~v~i~i~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v 465 (595)
T TIGR02350 386 TPLSLGIETLGGVMTKLIERNTTIPTKKSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQIEV 465 (595)
T ss_pred ccceeEEEecCCceEEEEeCCCcCCccceEeeeccCCCCcEEEEEEEeecccccccCcEeEEEEECCCCCCCCCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred EEEEcCCceEEEEEeecccCceeeEEEecCCCCCCHHHHHHHHHHHhhhhHHhHHHHHHHHHHHhHHHHHHHHHhhccch
Q 043296 483 CFDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEDIERMVQEAEKYKAEDEQVKKKVEAKNKLENYAYSMRNTVKDD 562 (650)
Q Consensus 483 ~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~ls~~e~~~~~~~~~~~~~~d~~~~~~~~akN~LE~~iy~~r~~L~~~ 562 (650)
+|++|.||+|+|++.+..+++..+++++.. .+||+++++++++++.++..+|+.++++.+++|+||+|||.+|++|++
T Consensus 466 ~f~~d~~G~l~v~~~~~~~~~~~~~~i~~~-~~ls~~~~~~~~~~~~~~~~~D~~~~~~~e~kn~lEs~iy~~r~~l~~- 543 (595)
T TIGR02350 466 TFDIDANGILHVSAKDKGTGKEQSITITAS-SGLSEEEIERMVKEAEANAEEDKKRKEEIEARNNADSLAYQAEKTLKE- 543 (595)
T ss_pred EEEEcCCCeEEEEEEEccCCceEEEEeccc-cccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 999999999999999999999988888764 569999999999999999999999999999999999999999999964
Q ss_pred hhhcccCHHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHHhHHHHHHHHh
Q 043296 563 KVAGKLAAADKQKIEKAVDETVEWLDGNQLAEVDEFEDKLKELEGLCNPIIAKMY 617 (650)
Q Consensus 563 ~~~~~~~~~~~~~i~~~l~e~~~WL~~~~~a~~~~~~~kl~eL~~~~~~i~~r~~ 617 (650)
+..++++++++++.+.++++++||+++ +.+++++++++|+++++++..+++
T Consensus 544 -~~~~~~~~e~~~l~~~l~~~~~wL~~~---d~~~i~~~~~~l~~~~~~~~~~~~ 594 (595)
T TIGR02350 544 -AGDKLPAEEKEKIEKAVAELKEALKGE---DVEEIKAKTEELQQALQKLAEAMY 594 (595)
T ss_pred -hhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578899999999999999999999987 778999999999999999998764
No 12
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=100.00 E-value=1.1e-98 Score=835.10 Aligned_cols=584 Identities=39% Similarity=0.641 Sum_probs=539.8
Q ss_pred EEEEEcCcceeEEEEEECCeeEEEecCCCCcccceEEEEcCC-cEEecHHHHHhHhhCcCchhhhhhHhcCCCCCChhhh
Q 043296 9 AIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPQNTVFDAKRLIGRRFSDPSVQ 87 (650)
Q Consensus 9 vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~-~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~~~ 87 (650)
+||||||||||+||++++|.+++++|..|++.+||+|+|.++ +++||..|+.++..+|.++++++||++|+.+.++..
T Consensus 1 ~iGIDlGTtns~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~~- 79 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKRLMGRSIEDIKT- 79 (599)
T ss_pred CEEEEEccccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEecHHHHHhhhhChhhhHHHHHHHhCCCccchhh-
Confidence 589999999999999999999999999999999999999754 899999999999999999999999999999876432
Q ss_pred hhcccCCeEEEeCCCCCceEEEEECCcceEecHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHHHH
Q 043296 88 SDMRHWPFKVASGPGDKPMIAVTYKGEEKRFSPEEISSMVLTKMKEIAEAYLGHAVKNAVVTVPAYFNDSQRQATKDAGA 167 (650)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~ 167 (650)
.+.+||.+....++...+.+. + ..++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++|++
T Consensus 80 --~~~~~~~~~~~~~~~~~~~~~--~--~~~~p~ei~a~iL~~lk~~a~~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~ 153 (599)
T TIGR01991 80 --FSILPYRFVDGPGEMVRLRTV--Q--GTVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAAR 153 (599)
T ss_pred --cccCCEEEEEcCCCceEEEeC--C--CEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHH
Confidence 567899988766666655443 2 3789999999999999999999999999999999999999999999999999
Q ss_pred HcCCceeeecchhHHHHHhcccccccCCCCCceEEEEEeCCcceEEEEEEEeCCEEEEEEeeCCCCCChhHHHHHHHHHH
Q 043296 168 IAGLNVMRIINEPTAAAIAYGLDKKASRTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHF 247 (650)
Q Consensus 168 ~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l 247 (650)
.|||+++++++||+|||++|++... .+.++||||+||||||+|++++.++.++++++.++.++||++||+.|++++
T Consensus 154 ~AGl~v~~li~EPtAAAlay~~~~~----~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~l 229 (599)
T TIGR01991 154 LAGLNVLRLLNEPTAAAVAYGLDKA----SEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWI 229 (599)
T ss_pred HcCCCceEEecCHHHHHHHHhhccC----CCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999987654 467899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHccCCCceEEEEcccccCeeEEEEEcHHHHHHHHHHHHhHHHHHHHHHH
Q 043296 248 VAEFRRKHKKDISGNARALRRLRTACERAKRTLSSTTQTTIEIDSLYEGIDFYATITRARFEELNMDLFRKCMEPVEKCL 327 (650)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l 327 (650)
.+++ +.+...+++.+.+|+.+||++|+.||.+..+.+.++. ++.++.++|||++|+++|+|+++++..+|+++|
T Consensus 230 ~~~~----~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~--~g~~~~~~itr~efe~l~~~ll~~i~~~i~~~L 303 (599)
T TIGR01991 230 LKQL----GISADLNPEDQRLLLQAARAAKEALTDAESVEVDFTL--DGKDFKGKLTRDEFEALIQPLVQKTLSICRRAL 303 (599)
T ss_pred HHhh----CCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEE--CCcEEEEEEeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8654 4555568889999999999999999999988888864 688999999999999999999999999999999
Q ss_pred HhcCCCCCCCCeEEEEcCccCcHHHHHHHHhhhCCccccccCCcchhHHhHHHHHHHHHcCCCCccccceEEEeeccccc
Q 043296 328 RDSKIDKSLVHDIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGDQKVQDLLLLDVTPLSL 407 (650)
Q Consensus 328 ~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~~~~~~~ 407 (650)
+++++.+.+|+.|+||||+||+|+|++.|++.|+ ..+..+.||++|||+|||++|+.+++. +..+++.+.|++|++|
T Consensus 304 ~~a~~~~~~id~ViLvGGssriP~V~~~l~~~f~-~~~~~~~npdeaVA~GAai~a~~l~~~--~~~~~~~l~dv~p~sl 380 (599)
T TIGR01991 304 RDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFG-QEPLTDIDPDQVVALGAAIQADLLAGN--RIGNDLLLLDVTPLSL 380 (599)
T ss_pred HHcCCChhhCCEEEEECCcCCChHHHHHHHHHhC-CCCCCCCCCcHHHHHHHHHHHHHhccc--cccCceEEEEeeeeee
Confidence 9999999999999999999999999999999994 567778999999999999999999853 4457899999999999
Q ss_pred eEEeeCCEEEEEEeCCCCCCccceeeeeecccCcceEEEEeeccccccccCCcceeEEEecCCCCCCCCCceeEEEEEEc
Q 043296 408 GIETAGGVMTTLIPRNTTVPAKKEQVFSTYADNQTSVLIQVYEGERARTKDNNLLGTFELKGIPPAPRGVPQINVCFDID 487 (650)
Q Consensus 408 gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~~~~~i~v~~~~d 487 (650)
|+++.+|.+.+|||||++||++++..|++..|+|..+.|.||||++..+.+|..||+|.|.++|+.+.|.++|+|+|++|
T Consensus 381 gi~~~~g~~~~ii~rnt~iP~~~~~~~~t~~d~q~~v~i~i~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id 460 (599)
T TIGR01991 381 GIETMGGLVEKIIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAARIRVTFQVD 460 (599)
T ss_pred EEEecCCEEEEEEeCCCcCCccceEEEEEccCCCeEEEEEEEeecccccccCceEEEEEEcCCCCCCCCCCcEEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEEeecccCceeeEEEecCCCCCCHHHHHHHHHHHhhhhHHhHHHHHHHHHHHhHHHHHHHHHhhccchhhhcc
Q 043296 488 ANGILHVSAEDKTAGVKNQITITNDKGRLSKEDIERMVQEAEKYKAEDEQVKKKVEAKNKLENYAYSMRNTVKDDKVAGK 567 (650)
Q Consensus 488 ~~g~l~v~~~~~~~~~~~~~~i~~~~~~ls~~e~~~~~~~~~~~~~~d~~~~~~~~akN~LE~~iy~~r~~L~~~~~~~~ 567 (650)
.||+|+|++.+..+|++..+.|.+. ..|++++++++.+++.++..+|...++..+++|++|+|+|.++..+.+ +...
T Consensus 461 ~~gil~V~a~~~~t~~~~~~~i~~~-~~l~~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 537 (599)
T TIGR01991 461 ADGLLTVSAQEQSTGVEQSIQVKPS-YGLSDEEIERMLKDSFKHAEEDMYARALAEQKVEAERILEALQAALAA--DGDL 537 (599)
T ss_pred CCCeEEEEEEECCCCcEEEEecccc-cCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhcc
Confidence 9999999999999999999888764 459999999999999999999999999999999999999999999864 4567
Q ss_pred cCHHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHHhHHHHHHHHhc
Q 043296 568 LAAADKQKIEKAVDETVEWLDGNQLAEVDEFEDKLKELEGLCNPIIAKMYQ 618 (650)
Q Consensus 568 ~~~~~~~~i~~~l~e~~~WL~~~~~a~~~~~~~kl~eL~~~~~~i~~r~~e 618 (650)
+++++++++...+++.++||+++ +.++++++.++|++.+.++..+.++
T Consensus 538 ~~~~~~~~~~~~l~~~~~~l~~~---~~~~~~~~~~~l~~~~~~~~~~~~~ 585 (599)
T TIGR01991 538 LSEDERAAIDAAMEALQKALQGD---DADAIKAAIEALEEATDNFAARRMD 585 (599)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999976 7789999999999999999986665
No 13
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=2e-97 Score=826.52 Aligned_cols=584 Identities=38% Similarity=0.635 Sum_probs=536.5
Q ss_pred CcEEEEEcCcceeEEEEEECCeeEEEecCCCCcccceEEEEcCCcEEecHHHHHhHhhCcCchhhhhhHhcCCCCCChhh
Q 043296 7 GKAIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRRFSDPSV 86 (650)
Q Consensus 7 ~~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~~ 86 (650)
..+||||||||||+||++.+|.+++++|..|++.+||+|+|.+++++||..|+.+...+|.++++.+||++|+.+.+ +
T Consensus 19 ~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d--~ 96 (616)
T PRK05183 19 RLAVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLEDGIEVGYEARANAAQDPKNTISSVKRFMGRSLAD--I 96 (616)
T ss_pred CeEEEEEeccccEEEEEEECCEEEEEEcCCCCeecCeEEEEcCCCEEEcHHHHHhhHhCchhhHHHHHHHhCCCchh--h
Confidence 47999999999999999999999999999999999999999988899999999999999999999999999998876 3
Q ss_pred hhhcccCCeEEEeCCCCCceEEEEECCcceEecHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHHH
Q 043296 87 QSDMRHWPFKVASGPGDKPMIAVTYKGEEKRFSPEEISSMVLTKMKEIAEAYLGHAVKNAVVTVPAYFNDSQRQATKDAG 166 (650)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa 166 (650)
+.....+||.+....++.+.+.+. + ..++|+++++++|++|++.++.+++.++.++|||||+||++.||+++++|+
T Consensus 97 ~~~~~~~~~~~~~~~~g~~~~~~~--~--~~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa 172 (616)
T PRK05183 97 QQRYPHLPYQFVASENGMPLIRTA--Q--GLKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAA 172 (616)
T ss_pred hhhhhcCCeEEEecCCCceEEEec--C--CeEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHH
Confidence 445667899888766666665543 2 378999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeeecchhHHHHHhcccccccCCCCCceEEEEEeCCcceEEEEEEEeCCEEEEEEeeCCCCCChhHHHHHHHHH
Q 043296 167 AIAGLNVMRIINEPTAAAIAYGLDKKASRTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNH 246 (650)
Q Consensus 167 ~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~ 246 (650)
+.|||++++|++||+|||++|+++.. .+.++||||+||||||+|++++.++.++++++.++.++||.+||..|++|
T Consensus 173 ~~AGl~v~~li~EPtAAAlay~~~~~----~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~~l~~~ 248 (616)
T PRK05183 173 RLAGLNVLRLLNEPTAAAIAYGLDSG----QEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLADW 248 (616)
T ss_pred HHcCCCeEEEecchHHHHHHhhcccC----CCCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHHHHHHH
Confidence 99999999999999999999987653 36789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHccCCCceEEEEcccccCeeEEEEEcHHHHHHHHHHHHhHHHHHHHHH
Q 043296 247 FVAEFRRKHKKDISGNARALRRLRTACERAKRTLSSTTQTTIEIDSLYEGIDFYATITRARFEELNMDLFRKCMEPVEKC 326 (650)
Q Consensus 247 l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~ 326 (650)
+.++|. .+...+++.+.+|+.+||++|+.||.+..+.+.+..+ . ..|||++|+++|+|+++++..+++++
T Consensus 249 ~~~~~~----~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~-~-----~~itr~efe~l~~~l~~~~~~~i~~~ 318 (616)
T PRK05183 249 ILEQAG----LSPRLDPEDQRLLLDAARAAKEALSDADSVEVSVALW-Q-----GEITREQFNALIAPLVKRTLLACRRA 318 (616)
T ss_pred HHHHcC----CCcCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEecC-C-----CeEcHHHHHHHHHHHHHHHHHHHHHH
Confidence 988764 3344678899999999999999999999888887532 2 24999999999999999999999999
Q ss_pred HHhcCCCCCCCCeEEEEcCccCcHHHHHHHHhhhCCccccccCCcchhHHhHHHHHHHHHcCCCCccccceEEEeecccc
Q 043296 327 LRDSKIDKSLVHDIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGDQKVQDLLLLDVTPLS 406 (650)
Q Consensus 327 l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~~~~~~ 406 (650)
|+++++.+.+|+.|+||||+||+|+|++.|+++|+ ..+..+.||++|||+|||++|+.+++. +..+++.+.|++|++
T Consensus 319 L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg-~~~~~~~npdeaVA~GAAi~a~~l~~~--~~~~~~~l~dv~p~s 395 (616)
T PRK05183 319 LRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFG-RTPLTSIDPDKVVAIGAAIQADILAGN--KPDSDMLLLDVIPLS 395 (616)
T ss_pred HHHcCCCcccCCEEEEECCcccChHHHHHHHHHhc-cCcCcCCCchHHHHHHHHHHHHHhccc--cccCceEEEeecccc
Confidence 99999999999999999999999999999999995 566778999999999999999999853 345689999999999
Q ss_pred ceEEeeCCEEEEEEeCCCCCCccceeeeeecccCcceEEEEeeccccccccCCcceeEEEecCCCCCCCCCceeEEEEEE
Q 043296 407 LGIETAGGVMTTLIPRNTTVPAKKEQVFSTYADNQTSVLIQVYEGERARTKDNNLLGTFELKGIPPAPRGVPQINVCFDI 486 (650)
Q Consensus 407 ~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~~~~~i~v~~~~ 486 (650)
||++..+|.+.+|||||++||+++++.|++..|+|+.+.|.+|||++..+.+|..||+|.|.|+|+.|.|.++|+|+|++
T Consensus 396 lgi~~~~g~~~~ii~r~t~iP~~~~~~~~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~~ 475 (616)
T PRK05183 396 LGLETMGGLVEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVTFQV 475 (616)
T ss_pred ccceecCCeEEEEEeCCCcccccccEEEEeccCCCeEEEEEEecccccccccccEEEEEEeCCCCCCCCCCccEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEEEeecccCceeeEEEecCCCCCCHHHHHHHHHHHhhhhHHhHHHHHHHHHHHhHHHHHHHHHhhccchhhhc
Q 043296 487 DANGILHVSAEDKTAGVKNQITITNDKGRLSKEDIERMVQEAEKYKAEDEQVKKKVEAKNKLENYAYSMRNTVKDDKVAG 566 (650)
Q Consensus 487 d~~g~l~v~~~~~~~~~~~~~~i~~~~~~ls~~e~~~~~~~~~~~~~~d~~~~~~~~akN~LE~~iy~~r~~L~~~~~~~ 566 (650)
|.||+|+|++.+..+|++.++.+.+.. .|++++++++++++.++..+|...+++.+++|++|.|+|.++..+.+ ...
T Consensus 476 d~~Gil~V~a~~~~~~~~~~~~i~~~~-~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~ 552 (616)
T PRK05183 476 DADGLLSVTAMEKSTGVEASIQVKPSY-GLTDDEIARMLKDSMSHAEEDMQARALAEQKVEAERVLEALQAALAA--DGD 552 (616)
T ss_pred CCCCeEEEEEEEcCCCcEEEecccccc-cCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--hhc
Confidence 999999999999999999999887654 59999999999999999999999999999999999999999999965 336
Q ss_pred ccCHHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHHhHHHHHHHHhcC
Q 043296 567 KLAAADKQKIEKAVDETVEWLDGNQLAEVDEFEDKLKELEGLCNPIIAKMYQG 619 (650)
Q Consensus 567 ~~~~~~~~~i~~~l~e~~~WL~~~~~a~~~~~~~kl~eL~~~~~~i~~r~~e~ 619 (650)
.+++++++++...+++.++||..+ +.+++++++++|++.+.++..+.+++
T Consensus 553 ~~~~~~~~~~~~~l~~~~~~l~~~---d~~~~~~~~~~l~~~~~~~~~~~~~~ 602 (616)
T PRK05183 553 LLSAAERAAIDAAMAALREVAQGD---DADAIEAAIKALDKATQEFAARRMDR 602 (616)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 789999999999999999999865 78999999999999999999876653
No 14
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.8e-98 Score=753.62 Aligned_cols=602 Identities=53% Similarity=0.838 Sum_probs=569.8
Q ss_pred CCCcEEEEEcCcceeEEEEEECCeeEEEecCCCCcccceEEEEc-CCcEEecHHHHHhHhhCcCchhhhhhHhcCCCCCC
Q 043296 5 TEGKAIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPQNTVFDAKRLIGRRFSD 83 (650)
Q Consensus 5 ~~~~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~-~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~ 83 (650)
....|+|||+|||||+++++.++.+.++.|..|.|.+||+|+|. ++++++|..|+.+...+|.|+++.-||++|+++.+
T Consensus 25 ~~~~vigidlgttnS~va~meg~~~kiienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntffatKrligRrf~d 104 (640)
T KOG0102|consen 25 VKGKVIGIDLGTTNSCVAVMEGKKPKIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATKRLIGRRFDD 104 (640)
T ss_pred CCCceeeEeeeccceeEEEEeCCCceEeecccccccCCceEEEeccccEEecchhhhhhccCCCceEEEehhhhhhhccC
Confidence 34569999999999999999999999999999999999999995 56999999999999999999999999999999999
Q ss_pred hhhhhhcccCCeEEEeCCCCCceEEEEECCcceEecHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHH
Q 043296 84 PSVQSDMRHWPFKVASGPGDKPMIAVTYKGEEKRFSPEEISSMVLTKMKEIAEAYLGHAVKNAVVTVPAYFNDSQRQATK 163 (650)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~ 163 (650)
|.++.+++..||+++...++...+.+ .++.++|.++.+++|.+++++|+.+++..+..+|+||||||++.||++++
T Consensus 105 ~evq~~~k~vpyKiVk~~ngdaw~e~----~G~~~spsqig~~vl~kmk~tae~yl~~~v~~avvtvpAyfndsqRqaTk 180 (640)
T KOG0102|consen 105 PEVQKDIKQVPYKIVKASNGDAWVEA----RGKQYSPSQIGAFVLMKMKETAEAYLGKKVKNAVITVPAYFNDSQRQATK 180 (640)
T ss_pred HHHHHHHHhCCcceEEccCCcEEEEe----CCeEecHHHHHHHHHHHHHHHHHHHcCchhhheeeccHHHHhHHHHHHhH
Confidence 99999999999999998888877766 46789999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceeeecchhHHHHHhcccccccCCCCCceEEEEEeCCcceEEEEEEEeCCEEEEEEeeCCCCCChhHHHHHH
Q 043296 164 DAGAIAGLNVMRIINEPTAAAIAYGLDKKASRTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRL 243 (650)
Q Consensus 164 ~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l 243 (650)
+|.++||++++++++||+|||++|+++... ...++|||+||||||+++..+.++.|++.++.+|.++||++||..+
T Consensus 181 dag~iagl~vlrvineptaaalaygld~k~----~g~iaV~dLgggtfdisilei~~gvfevksTngdtflggedfd~~~ 256 (640)
T KOG0102|consen 181 DAGQIAGLNVLRVINEPTAAALAYGLDKKE----DGVIAVFDLGGGTFDISILEIEDGVFEVKSTNGDTHLGGEDFDNAL 256 (640)
T ss_pred hhhhhccceeeccCCccchhHHhhcccccC----CCceEEEEcCCceeeeeeehhccceeEEEeccCccccChhHHHHHH
Confidence 999999999999999999999999998763 6789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHccCCCceEEEEcccccC----eeEEEEEcHHHHHHHHHHHHhHH
Q 043296 244 VNHFVAEFRRKHKKDISGNARALRRLRTACERAKRTLSSTTQTTIEIDSLYEG----IDFYATITRARFEELNMDLFRKC 319 (650)
Q Consensus 244 ~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~i~~~~~~----~~~~~~itr~~fe~~~~~~~~~i 319 (650)
.+++...|++..++++..+.++++||...+|++|..||......+.++.+..+ ..+++++||.+||+++.+++++.
T Consensus 257 ~~~~v~~fk~~~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei~lp~iTada~gpkh~~i~~tr~efe~~v~~lI~Rt 336 (640)
T KOG0102|consen 257 VRFIVSEFKKEEGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPFITADASGPKHLNIELTRGEFEELVPSLIART 336 (640)
T ss_pred HHHHHHhhhcccCcchhhhHHHHHHHHHHHHhhhhhhhhcccceeccceeeccCCCCeeEEEeecHHHHHHhhHHHHHhh
Confidence 99999999999999999999999999999999999999999999999877665 67899999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCeEEEEcCccCcHHHHHHHHhhhCCccccccCCcchhHHhHHHHHHHHHcCCCCccccceEE
Q 043296 320 MEPVEKCLRDSKIDKSLVHDIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGDQKVQDLLL 399 (650)
Q Consensus 320 ~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~ 399 (650)
+++++++|++|++..++|+.|+||||.+|+|.+++.+++.| +.......||+++||.|||+++..++|. ++++.+
T Consensus 337 i~p~~~aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~f-gk~p~~~vnPdeava~GAaiqggvl~ge----VkdvlL 411 (640)
T KOG0102|consen 337 IEPCKKALRDASLSSSDINEVILVGGMTRMPKVQSTVKELF-GKGPSKGVNPDEAVAGGAAIQGGVLSGE----VKDVLL 411 (640)
T ss_pred hhHHHHHHHhccCChhhhhhhhhhcchhhcHHHHHHHHHHh-CCCCCCCcCCcchhccchhhccchhhcc----ccceee
Confidence 99999999999999999999999999999999999999999 5788889999999999999999999986 899999
Q ss_pred EeeccccceEEeeCCEEEEEEeCCCCCCccceeeeeecccCcceEEEEeeccccccccCCcceeEEEecCCCCCCCCCce
Q 043296 400 LDVTPLSLGIETAGGVMTTLIPRNTTVPAKKEQVFSTYADNQTSVLIQVYEGERARTKDNNLLGTFELKGIPPAPRGVPQ 479 (650)
Q Consensus 400 ~~~~~~~~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~~~~~ 479 (650)
.|+.|+++|+++.+|.|..+++||+.||+.++..|++..|+|+.+.|.+|||++....+|..+|.|.+.|+||.|+|.|+
T Consensus 412 LdVtpLsLgietlggvft~Li~rnttIptkksqvfstaadgqt~V~ikv~qgere~~~dnk~lG~f~l~gipp~pRgvpq 491 (640)
T KOG0102|consen 412 LDVTPLSLGIETLGGVFTKLIPRNTTIPTKKSQVFSTAADGQTQVEIKVFQGEREMVNDNKLLGSFILQGIPPAPRGVPQ 491 (640)
T ss_pred eecchHHHHHHhhhhhheecccCCcccCchhhhheeecccCCceEEEEeeechhhhhccCcccceeeecccCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEcCCceEEEEEeecccCceeeEEEecCCCCCCHHHHHHHHHHHhhhhHHhHHHHHHHHHHHhHHHHHHHHHhhc
Q 043296 480 INVCFDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEDIERMVQEAEKYKAEDEQVKKKVEAKNKLENYAYSMRNTV 559 (650)
Q Consensus 480 i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~ls~~e~~~~~~~~~~~~~~d~~~~~~~~akN~LE~~iy~~r~~L 559 (650)
|.|+|.+|.||+++|++.++.++|.+++++.... .||++|++++..+.+.+...|+.++++.+..|..++++|.....+
T Consensus 492 ieVtfDIdanGI~~vsA~dk~t~K~qsi~i~~sg-gLs~~ei~~mV~eaer~~~~d~~~~~~ie~~nka~s~~~~te~~~ 570 (640)
T KOG0102|consen 492 IEVTFDIDANGIGTVSAKDKGTGKSQSITIASSG-GLSKDEIELMVGEAERLASTDKEKREAIETKNKADSIIYDTEKSL 570 (640)
T ss_pred eeEEEeecCCceeeeehhhcccCCccceEEeecC-CCCHHHHHHHHHHHHHHHhhhHHHHHHhhhhcchhheecCchhhh
Confidence 9999999999999999999999999999998764 599999999999999999999999999999999999999999998
Q ss_pred cchhhhcccCHHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHHhHHHHHHHHhcCCCC
Q 043296 560 KDDKVAGKLAAADKQKIEKAVDETVEWLDGNQLAEVDEFEDKLKELEGLCNPIIAKMYQGDGG 622 (650)
Q Consensus 560 ~~~~~~~~~~~~~~~~i~~~l~e~~~WL~~~~~a~~~~~~~kl~eL~~~~~~i~~r~~e~~~~ 622 (650)
.. +.+..+.++..+|...+....+.+..-...+.+++..+...|++...|++..++..++.
T Consensus 571 ~~--~~~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~k~~~~~l~q~~lkl~es~~k~~~~ 631 (640)
T KOG0102|consen 571 KE--FEEKIPAEECEKLEEKISDLRELVANKDSGDMEEIKKAMSALQQASLKLFESAYKNMGA 631 (640)
T ss_pred hh--hhhhCcHHHHHHHHHHHHHHHHHHhhhccCChhhHHHHHHHHHHhhhHHHHHHHhhhcc
Confidence 65 67778888888999999999888874322355899999999999999999998887643
No 15
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=100.00 E-value=9.4e-96 Score=826.87 Aligned_cols=598 Identities=49% Similarity=0.840 Sum_probs=551.9
Q ss_pred EEEEEcCcceeEEEEEECCeeEEEecCCCCcccceEEEEcCCcEEecHHHHHhHhhCcCchhhhhhHhcCCCCCChhhhh
Q 043296 9 AIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRRFSDPSVQS 88 (650)
Q Consensus 9 vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~~~~ 88 (650)
|||||||||||+||++.+|.++++.|..|+|++||+|+|.+++++||..|...+.++|.++++++|+|||+.++++.++.
T Consensus 1 viGID~Gt~~~~va~~~~~~~~ii~~~~~~~~~ps~v~~~~~~~~~G~~a~~~~~~~~~~~~~~~k~liG~~~~~~~~~~ 80 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKNGKPEIILNEEGKRKTPSVVSFSDNERLVGEDAKSQMIRNPKNTIYNLKRLIGRKFDDPDVQK 80 (602)
T ss_dssp EEEEEE-SSEEEEEEEETTEEEEE--TTS-SSEESEEEEESSCEEETHHHHHTTTTSGGGEEESGGGTTTSBTTSHHHHH
T ss_pred CEEEEeccCCEEEEEEEeccccccccccccccccceeeEeeecccCCcchhhhcccccccccccccccccccccccccch
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCeEEEeCCCCCceEEEEECCcceEecHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHHHHH
Q 043296 89 DMRHWPFKVASGPGDKPMIAVTYKGEEKRFSPEEISSMVLTKMKEIAEAYLGHAVKNAVVTVPAYFNDSQRQATKDAGAI 168 (650)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~ 168 (650)
..+.+||.+...+++...+.+.+.+....++|+++++++|++|++.++.+++..+.++|||||++|++.||+++++||+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~~~~Aa~~ 160 (602)
T PF00012_consen 81 EKKKFPYKVVEDPDGKVYFEVDYDGKSKTYSPEELSAMILKYLKEMAEKYLGEKVTDVVITVPAYFTDEQRQALRDAAEL 160 (602)
T ss_dssp HHTTSSSEEEEETTTEEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEE-TT--HHHHHHHHHHHHH
T ss_pred hhhcccccccccccccccccccccccceeeeeecccccchhhhcccchhhcccccccceeeechhhhhhhhhcccccccc
Confidence 99999999998888999999998888889999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeeecchhHHHHHhcccccccCCCCCceEEEEEeCCcceEEEEEEEeCCEEEEEEeeCCCCCChhHHHHHHHHHHH
Q 043296 169 AGLNVMRIINEPTAAAIAYGLDKKASRTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFV 248 (650)
Q Consensus 169 AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~ 248 (650)
|||++++|++||+|||++|++.+.. .++++||||+||||+|++++++.++.++++++.++..+||++||..|++++.
T Consensus 161 agl~~~~li~Ep~Aaa~~y~~~~~~---~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~~~ 237 (602)
T PF00012_consen 161 AGLNVLRLINEPTAAALAYGLERSD---KGKTVLVVDFGGGTFDVSVVEFSNGQFEVLATAGDNNLGGRDFDEALAEYLL 237 (602)
T ss_dssp TT-EEEEEEEHHHHHHHHTTTTSSS---SEEEEEEEEEESSEEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHH
T ss_pred cccccceeecccccccccccccccc---cccceeccccccceEeeeehhcccccccccccccccccccceecceeecccc
Confidence 9999999999999999999877664 6889999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCccHHHHHHHHHHHHHHHHHccC--CCceEEEEccccc-CeeEEEEEcHHHHHHHHHHHHhHHHHHHHH
Q 043296 249 AEFRRKHKKDISGNARALRRLRTACERAKRTLSS--TTQTTIEIDSLYE-GIDFYATITRARFEELNMDLFRKCMEPVEK 325 (650)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~--~~~~~~~i~~~~~-~~~~~~~itr~~fe~~~~~~~~~i~~~i~~ 325 (650)
++|..+++.++..+++.+.+|+.+||++|+.||. +.+..+.++.+.+ |.++.+.|||++|+++++|+++++..+|++
T Consensus 238 ~~~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~ 317 (602)
T PF00012_consen 238 EKFKKKYKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISIESLYDDGEDFSITITREEFEELCEPLLERIIEPIEK 317 (602)
T ss_dssp HHHHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEEEEEETTTEEEEEEEEHHHHHHHTHHHHHHTHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeccccccccccccccccc
Confidence 9999999888888999999999999999999999 6677788888877 889999999999999999999999999999
Q ss_pred HHHhcCCCCCCCCeEEEEcCccCcHHHHHHHHhhhCCccccccCCcchhHHhHHHHHHHHHcCCCCccccceEEEeeccc
Q 043296 326 CLRDSKIDKSLVHDIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGDQKVQDLLLLDVTPL 405 (650)
Q Consensus 326 ~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~~~~~ 405 (650)
+|++++++..+|+.|+||||+||+|+|++.|++.|+ ..+..++||++|||+|||++|+.+++ .++.+++.+.|++|+
T Consensus 318 ~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~-~~~~~~~~p~~aVA~GAa~~a~~~~~--~~~~~~~~~~d~~~~ 394 (602)
T PF00012_consen 318 ALKDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFG-KKISKSVNPDEAVARGAALYAAILSG--SFRVKDIKIIDVTPF 394 (602)
T ss_dssp HHHHTT--GGGESEEEEESGGGGSHHHHHHHHHHTT-SEEB-SS-TTTHHHHHHHHHHHHHHT--SCSSTSSCESEBESS
T ss_pred ccccccccccccceeEEecCcccchhhhhhhhhccc-cccccccccccccccccccchhhhcc--ccccccccccccccc
Confidence 999999999999999999999999999999999996 78889999999999999999999984 366788999999999
Q ss_pred cceEEeeCCEEEEEEeCCCCCCccceeeeeecccCcceEEEEeeccccccccCCcceeEEEecCCCCCCCCCceeEEEEE
Q 043296 406 SLGIETAGGVMTTLIPRNTTVPAKKEQVFSTYADNQTSVLIQVYEGERARTKDNNLLGTFELKGIPPAPRGVPQINVCFD 485 (650)
Q Consensus 406 ~~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~~~~~i~v~~~ 485 (650)
+||++..++.+.+++++|+++|...+..|++..++|..+.|.+|+|+.....+|..||++.|.++++.+.|.++|+++|+
T Consensus 395 ~~~i~~~~~~~~~ii~~~t~iP~~~~~~~~t~~~~~~~i~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~g~~~i~v~f~ 474 (602)
T PF00012_consen 395 SIGIEVSNGKFSKIIPKNTPIPSKKSKSFKTVTDNQTSISIDIYEGESSSFEDNKKIGSYTISGIPPAPKGKPKIKVTFE 474 (602)
T ss_dssp EEEEEETTTEEEEEESTTEBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEES-SSSSTTSSEEEEEEE
T ss_pred cccccccccccccccccccccccccccccchhccccccccceeeeccccccccccccccccccccccccccccceeeEEe
Confidence 99999999999999999999999999999999999999999999999988889999999999999999999999999999
Q ss_pred EcCCceEEEEEeecccCceeeEEEecCCCCCCHHHHHHHHHHHhhhhHHhHHHHHHHHHHHhHHHHHHHHHhhccchhhh
Q 043296 486 IDANGILHVSAEDKTAGVKNQITITNDKGRLSKEDIERMVQEAEKYKAEDEQVKKKVEAKNKLENYAYSMRNTVKDDKVA 565 (650)
Q Consensus 486 ~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~ls~~e~~~~~~~~~~~~~~d~~~~~~~~akN~LE~~iy~~r~~L~~~~~~ 565 (650)
+|.+|+|+|++.+..++....+++..... ++++++++++++++++...|+.+++..+++|+||+++|++|+.|++. .
T Consensus 475 ld~~Gil~V~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~e~kn~lE~~i~~~r~~l~~~--~ 551 (602)
T PF00012_consen 475 LDENGILSVEAAEVETGKEEEVTVKKKET-LSKEEIEELKKKLEEMDEEDEERRERAEAKNELESYIYELRDKLEED--K 551 (602)
T ss_dssp EETTSEEEEEEEETTTTEEEEEEEESSSS-SCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--G
T ss_pred eeeeeehhhhhcccccccccccccccccc-cccccccccccccchhhhhhhhhhhccccHHHHHHHHHHHHHHHHhh--h
Confidence 99999999999999999888888887655 99999999999999999999999999999999999999999999874 5
Q ss_pred cccCHHHHHHHHHHHHHHHHHHcCCC-CcCHHHHHHHHHHHHHhHHHHHHHHhc
Q 043296 566 GKLAAADKQKIEKAVDETVEWLDGNQ-LAEVDEFEDKLKELEGLCNPIIAKMYQ 618 (650)
Q Consensus 566 ~~~~~~~~~~i~~~l~e~~~WL~~~~-~a~~~~~~~kl~eL~~~~~~i~~r~~e 618 (650)
.+++++++ .+.+++..+||+++. +++.++|++|+++|+++.+||..|+++
T Consensus 552 ~~~~~~~~---~~~l~~~~~wl~~~~~~~~~~e~~~kl~~L~~~~~~i~~r~~~ 602 (602)
T PF00012_consen 552 DFVSEEEK---KKKLKETSDWLEDNGEDADKEEYKEKLEELKKVIEPIKKRYMQ 602 (602)
T ss_dssp GGSTHHHH---HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred ccCCHHHH---HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 66776666 889999999999874 568999999999999999999999874
No 16
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=3.1e-93 Score=785.21 Aligned_cols=550 Identities=33% Similarity=0.527 Sum_probs=484.3
Q ss_pred CcEEEEEcCcceeEEEEEECCeeEEEecCCCCcccceEEEEcCCcEEecHHHHHhHhhCcCchhhhhhHhcCCCCCCh--
Q 043296 7 GKAIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRRFSDP-- 84 (650)
Q Consensus 7 ~~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~-- 84 (650)
..+||||||||||+||++.+|.+++++|..|++.+||+|+|.++++++|..| +++++||++|+.+++.
T Consensus 19 ~~viGIDlGTT~S~va~~~~~~~~ii~n~~g~~~tPS~V~f~~~~~~vG~~A----------ti~~~KrliG~~~~~~~~ 88 (595)
T PRK01433 19 QIAVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSNNFTIGNNK----------GLRSIKRLFGKTLKEILN 88 (595)
T ss_pred ceEEEEEcCcccEEEEEEeCCeeEEEECCCCCeecCeEEEEcCCCEEECchh----------hHHHHHHHhCCCchhhcc
Confidence 4699999999999999999999999999999999999999998889999987 7899999999998652
Q ss_pred --hhhhhcccCCeEEEeCCCCCceEEEEECCcceEecHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHH
Q 043296 85 --SVQSDMRHWPFKVASGPGDKPMIAVTYKGEEKRFSPEEISSMVLTKMKEIAEAYLGHAVKNAVVTVPAYFNDSQRQAT 162 (650)
Q Consensus 85 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l 162 (650)
.+....+. .... ....+.+... +..++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++
T Consensus 89 ~~~~~~~~k~----~~~~--~~~~~~~~~~--~~~~speei~a~iL~~lk~~ae~~lg~~v~~aVITVPa~f~~~qR~a~ 160 (595)
T PRK01433 89 TPALFSLVKD----YLDV--NSSELKLNFA--NKQLRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEV 160 (595)
T ss_pred chhhHhhhhh----eeec--CCCeeEEEEC--CEEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHH
Confidence 22211111 1111 1222333333 468999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCceeeecchhHHHHHhcccccccCCCCCceEEEEEeCCcceEEEEEEEeCCEEEEEEeeCCCCCChhHHHHH
Q 043296 163 KDAGAIAGLNVMRIINEPTAAAIAYGLDKKASRTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNR 242 (650)
Q Consensus 163 ~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~ 242 (650)
++||+.|||+++++++||+|||++|+.+.. ...++||||+||||||+|++++.++.++++++.|+.++||++||.+
T Consensus 161 ~~Aa~~AGl~v~~li~EPtAAAlay~~~~~----~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG~d~D~~ 236 (595)
T PRK01433 161 MLAAKIAGFEVLRLIAEPTAAAYAYGLNKN----QKGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVV 236 (595)
T ss_pred HHHHHHcCCCEEEEecCcHHHHHHHhcccC----CCCEEEEEECCCCcEEEEEEEEeCCeEEEEEEcCCcccChHHHHHH
Confidence 999999999999999999999999987653 3568999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHccCCCceEEEEcccccCeeEEEEEcHHHHHHHHHHHHhHHHHH
Q 043296 243 LVNHFVAEFRRKHKKDISGNARALRRLRTACERAKRTLSSTTQTTIEIDSLYEGIDFYATITRARFEELNMDLFRKCMEP 322 (650)
Q Consensus 243 l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~fe~~~~~~~~~i~~~ 322 (650)
|++|+.++|... .+.+ .+..||++|+.||.+..... ..++|||++||++|+|+++++..+
T Consensus 237 l~~~~~~~~~~~------~~~~----~~~~~ekaK~~LS~~~~~~~----------~~~~itr~efe~l~~~l~~~~~~~ 296 (595)
T PRK01433 237 ITQYLCNKFDLP------NSID----TLQLAKKAKETLTYKDSFNN----------DNISINKQTLEQLILPLVERTINI 296 (595)
T ss_pred HHHHHHHhcCCC------CCHH----HHHHHHHHHHhcCCCccccc----------ceEEEcHHHHHHHHHHHHHHHHHH
Confidence 999998876421 1222 23459999999998764321 167999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCeEEEEcCccCcHHHHHHHHhhhCCccccccCCcchhHHhHHHHHHHHHcCCCCccccceEEEee
Q 043296 323 VEKCLRDSKIDKSLVHDIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGDQKVQDLLLLDV 402 (650)
Q Consensus 323 i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~~ 402 (650)
++++|++++ ..+|+.|+||||+||+|+|++.|++.| +.++..+.||+++||+|||++|+.+++. ..++.+.|+
T Consensus 297 i~~~L~~a~--~~~Id~ViLvGGssriP~v~~~l~~~f-~~~~~~~~npdeaVA~GAAi~a~~l~~~----~~~~~l~Dv 369 (595)
T PRK01433 297 AQECLEQAG--NPNIDGVILVGGATRIPLIKDELYKAF-KVDILSDIDPDKAVVWGAALQAENLIAP----HTNSLLIDV 369 (595)
T ss_pred HHHHHhhcC--cccCcEEEEECCcccChhHHHHHHHHh-CCCceecCCchHHHHHHHHHHHHHhhCC----ccceEEEEe
Confidence 999999998 568999999999999999999999999 4677888999999999999999999853 357899999
Q ss_pred ccccceEEeeCCEEEEEEeCCCCCCccceeeeeecccCcceEEEEeeccccccccCCcceeEEEecCCCCCCCCCceeEE
Q 043296 403 TPLSLGIETAGGVMTTLIPRNTTVPAKKEQVFSTYADNQTSVLIQVYEGERARTKDNNLLGTFELKGIPPAPRGVPQINV 482 (650)
Q Consensus 403 ~~~~~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~~~~~i~v 482 (650)
+|+++|+++.+|.+.+||+||++||+++++.|++..|+|+.+.|.+|||++....+|..||+|.|.|+|+.|.|.++|+|
T Consensus 370 ~p~slgi~~~~g~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v 449 (595)
T PRK01433 370 VPLSLGMELYGGIVEKIIMRNTPIPISVVKEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSIRAEV 449 (595)
T ss_pred cccceEEEecCCEEEEEEECCCcccceeeEEeEeecCCCeEEEEEEEeccccccCCCcEEEEEEEcCCCCCCCCCccEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCceEEEEEeecccCceeeEEEecCCCCCCHHHHHHHHHHHhhhhHHhHHHHHHHHHHHhHHHHHHHHHhhccch
Q 043296 483 CFDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEDIERMVQEAEKYKAEDEQVKKKVEAKNKLENYAYSMRNTVKDD 562 (650)
Q Consensus 483 ~~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~ls~~e~~~~~~~~~~~~~~d~~~~~~~~akN~LE~~iy~~r~~L~~~ 562 (650)
+|++|.||+|+|++.+..||++.++.|.+. ..||++|+++++++++++..+|...++..+++|++|++++.++..+++
T Consensus 450 tf~id~~Gil~V~a~~~~t~~~~~~~i~~~-~~ls~~ei~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~- 527 (595)
T PRK01433 450 TFAIDADGILSVSAYEKISNTSHAIEVKPN-HGIDKTEIDIMLENAYKNAKIDYTTRLLQEAVIEAEALIFNIERAIAE- 527 (595)
T ss_pred EEEECCCCcEEEEEEEcCCCcEEEEEecCC-CCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 999999999999999999999999999765 459999999999999999999999999999999999999999999965
Q ss_pred hhhcccCHHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHHhHHH
Q 043296 563 KVAGKLAAADKQKIEKAVDETVEWLDGNQLAEVDEFEDKLKELEGLCNP 611 (650)
Q Consensus 563 ~~~~~~~~~~~~~i~~~l~e~~~WL~~~~~a~~~~~~~kl~eL~~~~~~ 611 (650)
+...+++++++.+...+++.++||..+ +...+++++++|+..+.+
T Consensus 528 -~~~~l~~~~~~~i~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~ 572 (595)
T PRK01433 528 -LTTLLSESEISIINSLLDNIKEAVHAR---DIILINNSIKEFKSKIKK 572 (595)
T ss_pred -hhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHH
Confidence 556689999999999999999999865 444555555555554444
No 17
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-92 Score=733.68 Aligned_cols=594 Identities=36% Similarity=0.594 Sum_probs=549.2
Q ss_pred EEEEEcCcceeEEEEEECCeeEEEecCCCCcccceEEEEcCCcEEecHHHHHhHhhCcCchhhhhhHhcCCCCCChhhhh
Q 043296 9 AIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRRFSDPSVQS 88 (650)
Q Consensus 9 vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~~~~ 88 (650)
|+|||||..+|.+|+.+.+.+++|.|+.++|.+|++|+|...+|++|.+|.++...++.|++..+||++|+.+++|.++.
T Consensus 3 vvG~D~Gn~nc~iavAr~~gIe~i~nd~Snr~TPa~vsfg~K~R~~G~aak~~~~~n~kntv~~~KRl~Gr~f~dP~~q~ 82 (727)
T KOG0103|consen 3 VVGFDLGNENCYIAVARQGGIEVVANDYSNRETPAIVSFGPKNRFIGVAAKNQQTTNVKNTVSNFKRLIGRKFSDPEVQR 82 (727)
T ss_pred ceeeeccccceeeeeeccCCceeeeeccccccCcceeeeccccceeeeccccceeecccccchhhhhhhccccCChHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCeEEEeCCCCCceEEEEECCcceEecHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHHHHH
Q 043296 89 DMRHWPFKVASGPGDKPMIAVTYKGEEKRFSPEEISSMVLTKMKEIAEAYLGHAVKNAVVTVPAYFNDSQRQATKDAGAI 168 (650)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~ 168 (650)
..+.+|++++...|+...+.+.|-|+.+.|+|++|++|+|.+|+..+++.+..++.+|||+||+||++.||+++.+||++
T Consensus 83 ~~~~~~~~vv~~~dg~vgi~v~ylge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRravldAA~i 162 (727)
T KOG0103|consen 83 EIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVLAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVLDAARI 162 (727)
T ss_pred cccccchheeecCCCCcceeehcccCCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCeeEeccccccHHHHHHHHhHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeeecchhHHHHHhcccccccCC---CCCceEEEEEeCCcceEEEEEEEeCCEEEEEEeeCCCCCChhHHHHHHHH
Q 043296 169 AGLNVMRIINEPTAAAIAYGLDKKASR---TGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVN 245 (650)
Q Consensus 169 AGl~~~~li~Ep~Aaal~y~~~~~~~~---~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~ 245 (650)
|||+++++++|.+|+|++|++.+..-. .++.+|+++|+|++++.+|++.+..|.+.++++.+|..+||++||+.|.+
T Consensus 163 agLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF~kG~lkvl~ta~D~~lGgr~fDe~L~~ 242 (727)
T KOG0103|consen 163 AGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFTKGKLKVLATAFDRKLGGRDFDEALID 242 (727)
T ss_pred cCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeeeccCcceeeeeecccccccchHHHHHHH
Confidence 999999999999999999999887642 45788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHccCCCceEEEEcccccCeeEEEEEcHHHHHHHHHHHHhHHHHHHHH
Q 043296 246 HFVAEFRRKHKKDISGNARALRRLRTACERAKRTLSSTTQTTIEIDSLYEGIDFYATITRARFEELNMDLFRKCMEPVEK 325 (650)
Q Consensus 246 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~ 325 (650)
||.++|+.+|++++..++++..||+.+||+.|+.||++.....+|++++++.|.+..|+|++||++|.|+++++..++.+
T Consensus 243 hfa~efk~kykidv~sn~kA~lRL~~~~EKlKK~lSAN~~~plNIEcfM~d~dvs~~i~ReEfEel~~plL~rv~~p~~~ 322 (727)
T KOG0103|consen 243 HFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNIECFMNDKDVSSKIKREEFEELSAPLLERVEVPLLK 322 (727)
T ss_pred HHHHHhccccccchhhchhHHHHHHHHHHHHHHHhhcCcCCCcchhheeecchhhhhccHHHHHHHHHHHHHhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCCCeEEEEcCccCcHHHHHHHHhhhCCccccccCCcchhHHhHHHHHHHHHcCCCCccccceEEEeeccc
Q 043296 326 CLRDSKIDKSLVHDIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGDQKVQDLLLLDVTPL 405 (650)
Q Consensus 326 ~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~~~~~ 405 (650)
+|++++++..+|+.|.+|||+||+|.|.+.|.++| ++++.+++|.++|||+|||+++|++| |.++++++.++|+.||
T Consensus 323 ~l~d~~l~~edi~~VEiVGg~sripaike~Is~~F-gke~s~TlN~dEavarG~ALqcAIlS--P~frVRef~v~Di~py 399 (727)
T KOG0103|consen 323 ALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFF-GKELSRTLNQDEAVARGAALQCAILS--PTFRVREFSVEDIVPY 399 (727)
T ss_pred HHHHhcCccccceeEEEecCcccchHHHHHHHHHh-CCcccccccHHHHHHHhHHHHHHhcC--ccccceecceecccce
Confidence 99999999999999999999999999999999999 68999999999999999999999999 8899999999999999
Q ss_pred cceEEee----C-CEEEEEEeCCCCCCccceeeeeecccCcceEEEEeeccc-cccccCCcceeEEEecCCCCCCCC-Cc
Q 043296 406 SLGIETA----G-GVMTTLIPRNTTVPAKKEQVFSTYADNQTSVLIQVYEGE-RARTKDNNLLGTFELKGIPPAPRG-VP 478 (650)
Q Consensus 406 ~~gi~~~----~-~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~-~~~~~~~~~lg~~~l~~~~~~~~~-~~ 478 (650)
+|.+.+. + +....+||+|.++|.++..+|.... .|.+..++.. ...+.....|++|.+.++.+...| ..
T Consensus 400 sIs~~w~~~~ed~~~~~evF~~~~~~p~~K~lT~~Rk~----~F~lea~yt~~~~lp~~~~kI~~~~i~~v~~~~~ge~s 475 (727)
T KOG0103|consen 400 SISLRWVKQGEDGGSVTEVFPKGHPSPSVKLLTFNRKG----PFTLEAKYTKVNKLPYPKPKIEKWTITGVTPSEDGEFS 475 (727)
T ss_pred eEEEEeccccccCCCceeeecCCCCCCCceEEEEEecC----ceEEEEEeccccccCCCCCceeeEEecccccCcccccc
Confidence 9988864 2 4557899999999999999988765 3667766665 444546678999999988876663 45
Q ss_pred eeEEEEEEcCCceEEEEEeec--------------c--------------cCc----eeeEEEec-CCCCCCHHHHHHHH
Q 043296 479 QINVCFDIDANGILHVSAEDK--------------T--------------AGV----KNQITITN-DKGRLSKEDIERMV 525 (650)
Q Consensus 479 ~i~v~~~~d~~g~l~v~~~~~--------------~--------------~~~----~~~~~i~~-~~~~ls~~e~~~~~ 525 (650)
+++|+..++.+|++++..+.. . .++ ...+.+.. ..+.|+..+++.++
T Consensus 476 kVKvkvr~n~~Gi~~i~sA~~~e~~~veev~~~~~e~~~~~~~~~~~~~~~~k~kvk~~~L~~~~~~~~~l~~~~l~~~~ 555 (727)
T KOG0103|consen 476 KVKVKVRLNEHGIDTIESATLIEDIEVEEVPEEPMEYDDAAKMLERIAPAENKKKVKKVDLPIEAYTKGALITDELELYI 555 (727)
T ss_pred ceeEEEEEcCccceeeecceeecccchhccccchhhhhcchhhhhhhccccccceeeeccccceeeeccccCHHHHHHHH
Confidence 799999999999999864310 0 011 01122222 23579999999999
Q ss_pred HHHhhhhHHhHHHHHHHHHHHhHHHHHHHHHhhccchhhhcccCHHHHHHHHHHHHHHHHHHcCC-CCcCHHHHHHHHHH
Q 043296 526 QEAEKYKAEDEQVKKKVEAKNKLENYAYSMRNTVKDDKVAGKLAAADKQKIEKAVDETVEWLDGN-QLAEVDEFEDKLKE 604 (650)
Q Consensus 526 ~~~~~~~~~d~~~~~~~~akN~LE~~iy~~r~~L~~~~~~~~~~~~~~~~i~~~l~e~~~WL~~~-~~a~~~~~~~kl~e 604 (650)
+++.+|..+|+...++.++||.||+|||+||++|.+ .|..+++++++++|...|+++++|||++ .+.+...|..||.+
T Consensus 556 e~E~~M~~qD~~~~Et~D~KNaleeyVY~~R~kl~~-~y~~f~~~a~~e~~~~~l~~~E~wlyedGed~~k~~Y~~kl~e 634 (727)
T KOG0103|consen 556 EKENKMILQDKLEKETVDAKNALEEYVYDMRDKLSD-KYEDFITDAEREKLKKMLTDTEEWLYEDGEDQTKAVYVAKLEE 634 (727)
T ss_pred HHHHHhhhhhhhhhhhccHHHHHHHHHHHHHHHhhh-hhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHH
Confidence 999999999999999999999999999999999987 4899999999999999999999999987 46799999999999
Q ss_pred HHHhHH
Q 043296 605 LEGLCN 610 (650)
Q Consensus 605 L~~~~~ 610 (650)
|+++.+
T Consensus 635 lk~~g~ 640 (727)
T KOG0103|consen 635 LKKLGD 640 (727)
T ss_pred HHhhhh
Confidence 999996
No 18
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-91 Score=763.02 Aligned_cols=573 Identities=57% Similarity=0.855 Sum_probs=540.0
Q ss_pred CCcEEEEEcCcceeEEEEEECC-eeEEEecCCCCcccceEEEEcCC-cEEecHHHHHhHhhCcCchhhhhhHhcCCCCCC
Q 043296 6 EGKAIGIDLGTTYSCVGVWQND-RVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPQNTVFDAKRLIGRRFSD 83 (650)
Q Consensus 6 ~~~vvGID~GTt~s~va~~~~g-~~~ii~~~~g~~~~Ps~v~~~~~-~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~ 83 (650)
++.+||||||||||+||+++++ .+.++.|..|.|.+||+|+|..+ ++++|..|+.++..+|.++++.+||++|+...
T Consensus 4 ~~~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~- 82 (579)
T COG0443 4 AKKAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGSN- 82 (579)
T ss_pred CceEEEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCCC-
Confidence 5679999999999999999988 79999999999999999999866 59999999999999999999999999998611
Q ss_pred hhhhhhcccCCeEEEeCCCCCceEEEEECCcceEecHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHH
Q 043296 84 PSVQSDMRHWPFKVASGPGDKPMIAVTYKGEEKRFSPEEISSMVLTKMKEIAEAYLGHAVKNAVVTVPAYFNDSQRQATK 163 (650)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~ 163 (650)
...+.+...+ +.++|+++++++|++|++.++.+++..+.++|||||+||++.||++++
T Consensus 83 --------------------~~~~~~~~~~--~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~ 140 (579)
T COG0443 83 --------------------GLKISVEVDG--KKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATK 140 (579)
T ss_pred --------------------CCcceeeeCC--eeeCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHH
Confidence 0001112222 689999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceeeecchhHHHHHhcccccccCCCCCceEEEEEeCCcceEEEEEEEeCCEEEEEEeeCCCCCChhHHHHHH
Q 043296 164 DAGAIAGLNVMRIINEPTAAAIAYGLDKKASRTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRL 243 (650)
Q Consensus 164 ~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l 243 (650)
+|+++|||+++++++||+|||++|+.+.. .+.+|||||+||||||+|++++..+.++++++.++.++||++||.+|
T Consensus 141 ~A~~iaGl~vlrlinEPtAAAlayg~~~~----~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l 216 (579)
T COG0443 141 DAARIAGLNVLRLINEPTAAALAYGLDKG----KEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNAL 216 (579)
T ss_pred HHHHHcCCCeEEEecchHHHHHHhHhccC----CCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHH
Confidence 99999999999999999999999999876 58899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHccCCCceEEEEcccccCeeEEEEEcHHHHHHHHHHHHhHHHHHH
Q 043296 244 VNHFVAEFRRKHKKDISGNARALRRLRTACERAKRTLSSTTQTTIEIDSLYEGIDFYATITRARFEELNMDLFRKCMEPV 323 (650)
Q Consensus 244 ~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~fe~~~~~~~~~i~~~i 323 (650)
.+|+.++|..+++.++..+++.+++|+.+||++|+.||...++.+.++.+..+.++...|||++||+++.+++.++..++
T Consensus 217 ~~~~~~~f~~~~~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~~~~~~~~~~~~~~ltR~~~E~l~~dll~r~~~~~ 296 (579)
T COG0443 217 IDYLVMEFKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDIDLLKELTRAKFEELILDLLERTIEPV 296 (579)
T ss_pred HHHHHHHhhccCCccccccHHHHHHHHHHHHHHHHHcccccccccchhhccccchhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887777788899999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCeEEEEcCccCcHHHHHHHHhhhCCccccccCCcchhHHhHHHHHHHHHcCCCCccccceEEEeec
Q 043296 324 EKCLRDSKIDKSLVHDIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGDQKVQDLLLLDVT 403 (650)
Q Consensus 324 ~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~p~~ava~GAa~~a~~~~~~~~~~~~~~~~~~~~ 403 (650)
.+++.+++++..+|+.|+||||++|||.|++.++++|+ .++...+||+++||.|||++|..+++. .+++.+.|+.
T Consensus 297 ~~al~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~-~~~~~~inpdeava~GAa~qa~~l~~~----~~d~ll~Dv~ 371 (579)
T COG0443 297 EQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFG-KEPEKSINPDEAVALGAAIQAAVLSGE----VPDVLLLDVI 371 (579)
T ss_pred HHHHHHcCCChhhCceEEEccceeccHHHHHHHHHHhC-ccccccCCccHHHHHHHHHHHHhhcCc----ccCceEEeee
Confidence 99999999999999999999999999999999999995 889999999999999999999999875 3389999999
Q ss_pred cccceEEeeCCEEEEEEeCCCCCCccceeeeeecccCcceEEEEeeccccccccCCcceeEEEecCCCCCCCCCceeEEE
Q 043296 404 PLSLGIETAGGVMTTLIPRNTTVPAKKEQVFSTYADNQTSVLIQVYEGERARTKDNNLLGTFELKGIPPAPRGVPQINVC 483 (650)
Q Consensus 404 ~~~~gi~~~~~~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~~~~~i~v~ 483 (650)
|+++|++..++.+..++++|+.+|.++...|++..|+|..+.+.+++|++...++|..+|.|.+.++||.|.|.++|.++
T Consensus 372 plslgie~~~~~~~~ii~rn~~iP~~~~~~f~t~~d~q~~~~i~v~qge~~~~~~~~~lg~f~l~~i~~~~~g~~~i~v~ 451 (579)
T COG0443 372 PLSLGIETLGGVRTPIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEVT 451 (579)
T ss_pred eeccccccCcchhhhHHhcCCCCCcccceEEEeecCCCceeEEEEEecchhhcccCceeEEEECCCCCCCCCCCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCceEEEEEeecccCceeeEEEecCCCCCCHHHHHHHHHHHhhhhHHhHHHHHHHHHHHhHHHHHHHHHhhccchh
Q 043296 484 FDIDANGILHVSAEDKTAGVKNQITITNDKGRLSKEDIERMVQEAEKYKAEDEQVKKKVEAKNKLENYAYSMRNTVKDDK 563 (650)
Q Consensus 484 ~~~d~~g~l~v~~~~~~~~~~~~~~i~~~~~~ls~~e~~~~~~~~~~~~~~d~~~~~~~~akN~LE~~iy~~r~~L~~~~ 563 (650)
|.+|.||+++|++.+..+|+..+++|....+ |++++++.+.+....+.+.|...++..+.+|..+.+++.++..|.+..
T Consensus 452 f~iD~~gi~~v~a~~~~~~k~~~i~i~~~~~-ls~~~i~~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 530 (579)
T COG0443 452 FDIDANGILNVTAKDLGTGKEQSITIKASSG-LSDEEIERMVEDAEANAALDKKFRELVEARNEAESLIYSLEKALKEIV 530 (579)
T ss_pred eccCCCcceEeeeecccCCceEEEEEecCCC-CCHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999887 999999999999999999999999999999999999999999997633
Q ss_pred hhcccCHHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHHhHHHHHHHHhc
Q 043296 564 VAGKLAAADKQKIEKAVDETVEWLDGNQLAEVDEFEDKLKELEGLCNPIIAKMYQ 618 (650)
Q Consensus 564 ~~~~~~~~~~~~i~~~l~e~~~WL~~~~~a~~~~~~~kl~eL~~~~~~i~~r~~e 618 (650)
.+++++++++.+.+.++++||+.. .++++.+.++|+....++..++++
T Consensus 531 ---~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~l~~~~~~~~~~~~~ 578 (579)
T COG0443 531 ---KVSEEEKEKIEEAITDLEEALEGE----KEEIKAKIEELQEVTQKLAEKKYQ 578 (579)
T ss_pred ---cCCHHHHHHHHHHHHHHHHHHhcc----HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 789999999999999999999982 899999999999999999988775
No 19
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-83 Score=666.61 Aligned_cols=603 Identities=30% Similarity=0.497 Sum_probs=531.5
Q ss_pred CCcEEEEEcCcceeEEEEEECC-eeEEEecCCCCcccceEEEEcCCcEEecHHHHHhHhhCcCchhhhhhHhcCCCCCCh
Q 043296 6 EGKAIGIDLGTTYSCVGVWQND-RVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRRFSDP 84 (650)
Q Consensus 6 ~~~vvGID~GTt~s~va~~~~g-~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~ 84 (650)
...|++|||||.+++|+++++| +++|+.|..++|++|++|+|.+++|+||.+|.....++|++++..++.++|+...+|
T Consensus 21 ~~AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vafk~~eR~fg~~A~~ma~r~P~~~~~~l~~llgk~~~~~ 100 (902)
T KOG0104|consen 21 ALAVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAFKGGERIFGEAAASMATRFPQSTYRQLKDLLGKSLDDP 100 (902)
T ss_pred hhhheeeecccceeEEEEecCCCCeEEeechhhcccCcceEEecCCceehhhhhhhhhhcCcHHHHHHHHHHhCcccCCc
Confidence 4579999999999999999999 689999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccCCeEEEeCCCCCceEEEEECCcceEecHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHH
Q 043296 85 SVQSDMRHWPFKVASGPGDKPMIAVTYKGEEKRFSPEEISSMVLTKMKEIAEAYLGHAVKNAVVTVPAYFNDSQRQATKD 164 (650)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~ 164 (650)
.+..+.+.+|+--......+..+.+.+.+ ...|++|++++|+|.+.+..|+.+...+++++|||||.||++.+|+++.+
T Consensus 101 ~v~ly~~~~p~~e~v~d~~rstV~F~i~d-~~~ysvEellAMil~~a~~~ae~~a~~~Ikd~ViTVP~~F~qaeR~all~ 179 (902)
T KOG0104|consen 101 TVDLYQKRFPFFELVEDPQRSTVVFKISD-QEEYSVEELLAMILQYAKSLAEEYAKQPIKDMVITVPPFFNQAERRALLQ 179 (902)
T ss_pred HHHHHHhcCCceeecccCccceEEEEeCC-ccccCHHHHHHHHHHHHHHHHHHHHhcchhheEEeCCcccCHHHHHHHHH
Confidence 99999998886544444467778777766 56899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceeeecchhHHHHHhcccccccC-CCCCceEEEEEeCCcceEEEEEEEe----------CCEEEEEEeeCCCC
Q 043296 165 AGAIAGLNVMRIINEPTAAAIAYGLDKKAS-RTGEKNVLIFDLGGGTFDVSLLTIE----------EGIFEVKATAGDTH 233 (650)
Q Consensus 165 Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~-~~~~~~vlV~D~GggT~dvsv~~~~----------~~~~~v~~~~~~~~ 233 (650)
||++||++++.||++.+|+|+.|++.+... ...+.+++|||||+|+|.++++.+. ...+++++.+++..
T Consensus 180 Aa~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~k~~g~~~p~i~~~gvGfd~t 259 (902)
T KOG0104|consen 180 AAQIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVKTKEQGGKQPQIQVLGVGFDRT 259 (902)
T ss_pred HHHhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEeeccccccCccceEEEEeeccCCc
Confidence 999999999999999999999999987544 3578999999999999999999985 15889999999999
Q ss_pred CChhHHHHHHHHHHHHHHHhhcC--CCCCccHHHHHHHHHHHHHHHHHccCCCceEEEEcccccCeeEEEEEcHHHHHHH
Q 043296 234 LGGEDFDNRLVNHFVAEFRRKHK--KDISGNARALRRLRTACERAKRTLSSTTQTTIEIDSLYEGIDFYATITRARFEEL 311 (650)
Q Consensus 234 lGG~~~d~~l~~~l~~~~~~~~~--~~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~fe~~ 311 (650)
|||..|..+|.+||.+.|.++++ .++..+||++.+|.++|+++|..||+|..+.+.|+++++++||+.+|||++||++
T Consensus 260 LGG~e~~~rLr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vLSANsea~aqIEsL~ddiDFr~kvTRe~fEel 339 (902)
T KOG0104|consen 260 LGGLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANSEAFAQIESLIDDIDFRLKVTREEFEEL 339 (902)
T ss_pred cchHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHhhccccccceeHHHHHHH
Confidence 99999999999999999999886 4678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHhcCCCCCCCCeEEEEcCccCcHHHHHHHHhhhCCccccccCCcchhHHhHHHHHHHHHcCCCC
Q 043296 312 NMDLFRKCMEPVEKCLRDSKIDKSLVHDIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGD 391 (650)
Q Consensus 312 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~p~~ava~GAa~~a~~~~~~~~ 391 (650)
|+++..++..+|+++|..++++.++|+.|+|.||+||+|.||+.|.+..+..++...+|.|||+++||+++|+.|| ..
T Consensus 340 c~Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDEA~vmGav~~aA~LS--ks 417 (902)
T KOG0104|consen 340 CADLEERIVEPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEELGKNLNADEAAVMGAVYQAAHLS--KS 417 (902)
T ss_pred HHHHHHhhhhhHHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHhHHHHhcccChhHHHHHHHHHHHHhhc--cc
Confidence 9999999999999999999999999999999999999999999999999888999999999999999999999999 67
Q ss_pred ccccceEEEeeccccceEEeeCC--------EEEEEEeCCCCCCccceeeeeecccCcceEEEEeeccccccccCCccee
Q 043296 392 QKVQDLLLLDVTPLSLGIETAGG--------VMTTLIPRNTTVPAKKEQVFSTYADNQTSVLIQVYEGERARTKDNNLLG 463 (650)
Q Consensus 392 ~~~~~~~~~~~~~~~~gi~~~~~--------~~~~ii~~~~~ip~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg 463 (650)
|+++++.+.|.++|+|-++.... ....+|+++.++|..+..+|+.+.|+. .+.+-.+.-. ..+-
T Consensus 418 FKvKpf~V~D~~~yp~~v~f~~~~~i~~~k~~~~~lf~~~~~yPnk~vi~~~~ysddf---~~~~n~~~~~-----~nl~ 489 (902)
T KOG0104|consen 418 FKVKPFNVVDASVYPYLVEFETEPGIHALKSVKRDLFARMSPYPNKKVITFTSYSDDF---PFNINYGDLG-----QNLT 489 (902)
T ss_pred ccccceeeeecccccEEEEeccCCcccccchhHHHHHhcCCcCCCcceeeccccCCcc---ccccchhhhc-----cCcc
Confidence 99999999999999887765432 234689999999999988888777643 2222222110 2344
Q ss_pred EEEecCCCCCCC-------CCceeEEEEEEcCCceEEEEEeecc---------------------c--------------
Q 043296 464 TFELKGIPPAPR-------GVPQINVCFDIDANGILHVSAEDKT---------------------A-------------- 501 (650)
Q Consensus 464 ~~~l~~~~~~~~-------~~~~i~v~~~~d~~g~l~v~~~~~~---------------------~-------------- 501 (650)
++++.|+....+ ....|+++|.+|.+|++.|+..+.. +
T Consensus 490 ~velsgV~d~~kk~~~~~~~~KGIk~~F~~D~Sgi~~v~~~evv~e~~~~~d~~~~~st~~K~~~~~e~e~~~~~~~~~e 569 (902)
T KOG0104|consen 490 TVELSGVKDALKKNSYSDSESKGIKASFSLDLSGIVLVSRVEVVFEKQKEEDSGDKKSTLSKLGSTSEGEETSDDSVQEE 569 (902)
T ss_pred EEEEecchHHHHhcccchhhccCceEEEEEcCcCceEEeeeeEEEeccCCcccchhhhhhhccccccccccccccccchh
Confidence 777776653221 1335999999999999998653210 0
Q ss_pred ---------Cc-e-------------------------------------eeEEEecC---CCCCCHHHHHHHHHHHhhh
Q 043296 502 ---------GV-K-------------------------------------NQITITND---KGRLSKEDIERMVQEAEKY 531 (650)
Q Consensus 502 ---------~~-~-------------------------------------~~~~i~~~---~~~ls~~e~~~~~~~~~~~ 531 (650)
++ . ..+.|... ...|+.+.+....++++.+
T Consensus 570 ~ae~k~~ep~e~se~~ee~~~d~s~e~k~e~~t~e~~~~~~~~~~~~p~~~~~~i~~~~~~~~~l~~~~~~~~~~kl~d~ 649 (902)
T KOG0104|consen 570 DAEEKGLEPSERSELEEEAEEDASQEDKTEKETSEAQKPTEKKETPAPMVVRLQIQETYPDLPVLNENALDAAVAKLEDF 649 (902)
T ss_pred hhhhhccCccccccccccccccccccccccccchhccCcchhhcccCcceeEeeeeeecccccCCchhHHHHHHHHHHHH
Confidence 00 0 01333322 2468999999999999999
Q ss_pred hHHhHHHHHHHHHHHhHHHHHHHHHhhccchhhhcccCHHHHHHHHHHHHHHHHHHcCC-CCcCHHHHHHHHHHHHHhHH
Q 043296 532 KAEDEQVKKKVEAKNKLENYAYSMRNTVKDDKVAGKLAAADKQKIEKAVDETVEWLDGN-QLAEVDEFEDKLKELEGLCN 610 (650)
Q Consensus 532 ~~~d~~~~~~~~akN~LE~~iy~~r~~L~~~~~~~~~~~~~~~~i~~~l~e~~~WL~~~-~~a~~~~~~~kl~eL~~~~~ 610 (650)
..+|+.+.++++|.|+||.|+|++.++|.+++|..+.+++++..|.+.+..+.+||+++ .+..+++|++++.+|++++.
T Consensus 650 ~~~e~~k~~re~a~N~LE~~l~e~q~~l~d~ey~e~at~EEk~~L~~~~~~~~~Wleed~~~~~t~~~~ek~a~L~~l~~ 729 (902)
T KOG0104|consen 650 VQKEKEKSEREEASNELEAFLFELQDKLDDDEYAEVATEEEKKILKKKVSLLMDWLEEDGSQTPTEMLTEKLAELKKLET 729 (902)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHhcCchHhhhcCHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999989999999999999999999999999987 46789999999999999999
Q ss_pred HHHHHHhcC
Q 043296 611 PIIAKMYQG 619 (650)
Q Consensus 611 ~i~~r~~e~ 619 (650)
.+..|..+.
T Consensus 730 ~~~~R~ee~ 738 (902)
T KOG0104|consen 730 SKNFREEER 738 (902)
T ss_pred hhhHHHHHH
Confidence 999997764
No 20
>PRK11678 putative chaperone; Provisional
Probab=100.00 E-value=9e-56 Score=471.44 Aligned_cols=337 Identities=25% Similarity=0.361 Sum_probs=287.5
Q ss_pred EEEEEcCcceeEEEEEECCeeEEEecCCCCcccceEEEEc----------------------------------------
Q 043296 9 AIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFT---------------------------------------- 48 (650)
Q Consensus 9 vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~---------------------------------------- 48 (650)
++|||||||||++|++++|.++++++..|.+.+||+|+|.
T Consensus 2 ~iGID~GTtNs~va~~~~~~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T PRK11678 2 FIGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDIDV 81 (450)
T ss_pred eEEEecCccceeeEEeeCCceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhcccccccc
Confidence 6999999999999999999999999999999999999994
Q ss_pred -CCcEEecHHHHHhHhhCcCch--hhhhhHhcCCCCCChhhhhhcccCCeEEEeCCCCCceEEEEECCcceEecHHHHHH
Q 043296 49 -DTERLIGDAAKNQVAMNPQNT--VFDAKRLIGRRFSDPSVQSDMRHWPFKVASGPGDKPMIAVTYKGEEKRFSPEEISS 125 (650)
Q Consensus 49 -~~~~~~G~~A~~~~~~~~~~~--~~~~k~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 125 (650)
++..++|..|..++..+|.++ +.++|++||...-.+ .....++++++
T Consensus 82 ~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~~------------------------------~~~~~~e~l~a 131 (450)
T PRK11678 82 TAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLKP------------------------------QQVALFEDLVC 131 (450)
T ss_pred cccccchhHHHHHhhccCCCCceEEecchhhhccCCCCc------------------------------cceeCHHHHHH
Confidence 456789999999999999988 679999999752110 11234899999
Q ss_pred HHHHHHHHHHHHHhcCCCCcEEEEeCCCCC-----HHHHHH---HHHHHHHcCCceeeecchhHHHHHhcccccccCCCC
Q 043296 126 MVLTKMKEIAEAYLGHAVKNAVVTVPAYFN-----DSQRQA---TKDAGAIAGLNVMRIINEPTAAAIAYGLDKKASRTG 197 (650)
Q Consensus 126 ~~L~~l~~~a~~~~~~~~~~~VitVPa~~~-----~~qr~~---l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~ 197 (650)
++|++|++.++.+++.++.++|||||++|+ +.||++ +++||+.|||++++|++||+|||++|+.... .
T Consensus 132 ~iL~~lk~~ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~----~ 207 (450)
T PRK11678 132 AMMLHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLT----E 207 (450)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccC----C
Confidence 999999999999999999999999999998 777766 6999999999999999999999999986432 5
Q ss_pred CceEEEEEeCCcceEEEEEEEeCC-------EEEEEEeeCCCCCChhHHHHHHH-HHHHHHHHh----hcCCCC------
Q 043296 198 EKNVLIFDLGGGTFDVSLLTIEEG-------IFEVKATAGDTHLGGEDFDNRLV-NHFVAEFRR----KHKKDI------ 259 (650)
Q Consensus 198 ~~~vlV~D~GggT~dvsv~~~~~~-------~~~v~~~~~~~~lGG~~~d~~l~-~~l~~~~~~----~~~~~~------ 259 (650)
+..+||||+||||+|+|++++.++ ..+++++.| ..+||++||..|+ +++...|.. +++..+
T Consensus 208 ~~~vlV~D~GGGT~D~Svv~~~~~~~~~~~r~~~vla~~G-~~lGG~DfD~~L~~~~~~~~fg~~~~~~~g~~~p~~~~~ 286 (450)
T PRK11678 208 EKRVLVVDIGGGTTDCSMLLMGPSWRGRADRSASLLGHSG-QRIGGNDLDIALAFKQLMPLLGMGSETEKGIALPSLPFW 286 (450)
T ss_pred CCeEEEEEeCCCeEEEEEEEecCcccccCCcceeEEecCC-CCCChHHHHHHHHHHHHHHHhhhchhhccCCcCcchhhh
Confidence 788999999999999999999754 357889888 6899999999997 677777642 111110
Q ss_pred -----------------------------CccHHHH------------HHHHHHHHHHHHHccCCCceEEEEcccccCee
Q 043296 260 -----------------------------SGNARAL------------RRLRTACERAKRTLSSTTQTTIEIDSLYEGID 298 (650)
Q Consensus 260 -----------------------------~~~~~~~------------~~L~~~~e~~K~~ls~~~~~~~~i~~~~~~~~ 298 (650)
..+++.+ .+|+.+||++|+.||.+.++.+.++.+. .+
T Consensus 287 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~~rl~~l~~~~~~~~L~~~aE~aK~~LS~~~~a~i~~~~~~--~~ 364 (450)
T PRK11678 287 NAVAINDVPAQSDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFIS--DG 364 (450)
T ss_pred hhhhhhccchhhhhhhhhhHHHHHHHhhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCCceEEEecccC--CC
Confidence 0123223 3688999999999999999999988654 35
Q ss_pred EEEEEcHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCeEEEEcCccCcHHHHHHHHhhhCCccccccCCcchhHHhH
Q 043296 299 FYATITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSLVHDIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYG 378 (650)
Q Consensus 299 ~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~p~~ava~G 378 (650)
+...|||++|+++++|+++++..+|+++|+++++. ++.|+||||+|++|.|++.|++.||+.++. ..+|.++||.|
T Consensus 365 ~~~~ItR~efe~ii~~~l~ri~~~i~~~L~~a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~~~v~-~g~~~~sVa~G 440 (450)
T PRK11678 365 LATEISQQGLEEAISQPLARILELVQLALDQAQVK---PDVIYLTGGSARSPLIRAALAQQLPGIPIV-GGDDFGSVTAG 440 (450)
T ss_pred cceeeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCEEEEcCcccchHHHHHHHHHHCCCCcEE-eCCCcchHHHH
Confidence 67899999999999999999999999999999876 478999999999999999999999765554 56999999999
Q ss_pred HHHHHHHH
Q 043296 379 AAVQAAIL 386 (650)
Q Consensus 379 Aa~~a~~~ 386 (650)
+|++|..+
T Consensus 441 la~~a~~~ 448 (450)
T PRK11678 441 LARWAQVV 448 (450)
T ss_pred HHHHHHhh
Confidence 99998753
No 21
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=100.00 E-value=3.3e-39 Score=337.08 Aligned_cols=307 Identities=22% Similarity=0.362 Sum_probs=238.6
Q ss_pred EEEEcCcceeEEEEEECCeeEEEecCCCCcccceEEEEcCC--c-EEecHHHHHhHhhCcCchhhhhhHhcCCCCCChhh
Q 043296 10 IGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDT--E-RLIGDAAKNQVAMNPQNTVFDAKRLIGRRFSDPSV 86 (650)
Q Consensus 10 vGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~--~-~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~~ 86 (650)
+||||||+||+++....+ .++ ..||+|+|..+ . ..+|.+|+....+.|.+....
T Consensus 6 ~gIDlGt~~~~i~~~~~~--~v~-------~~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~~-------------- 62 (336)
T PRK13928 6 IGIDLGTANVLVYVKGKG--IVL-------NEPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVAI-------------- 62 (336)
T ss_pred eEEEcccccEEEEECCCC--EEE-------ccCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEEE--------------
Confidence 899999999999876333 333 36999999853 2 469999988776666554310
Q ss_pred hhhcccCCeEEEeCCCCCceEEEEECCcceEecHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHHH
Q 043296 87 QSDMRHWPFKVASGPGDKPMIAVTYKGEEKRFSPEEISSMVLTKMKEIAEAYLGHAVKNAVVTVPAYFNDSQRQATKDAG 166 (650)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa 166 (650)
.|+ . ...+...++...+|+++.+.+..........+|||||++|+..+|+++++|+
T Consensus 63 ------~pi-----~-------------~G~i~d~~~~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a~ 118 (336)
T PRK13928 63 ------RPL-----R-------------DGVIADYDVTEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREAA 118 (336)
T ss_pred ------ccC-----C-------------CCeEecHHHHHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 111 0 0123444667777888776543322233346999999999999999999999
Q ss_pred HHcCCceeeecchhHHHHHhcccccccCCCCCceEEEEEeCCcceEEEEEEEeCCEEEEEEeeCCCCCChhHHHHHHHHH
Q 043296 167 AIAGLNVMRIINEPTAAAIAYGLDKKASRTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNH 246 (650)
Q Consensus 167 ~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~ 246 (650)
+.||++.+.+++||+|||++|+.+.. ++..++|||+||||||+++++... ....++.++||++||+.|+++
T Consensus 119 ~~ag~~~~~li~ep~Aaa~~~g~~~~----~~~~~lVvDiGggttdvsvv~~g~-----~~~~~~~~lGG~did~~i~~~ 189 (336)
T PRK13928 119 EQAGAKKVYLIEEPLAAAIGAGLDIS----QPSGNMVVDIGGGTTDIAVLSLGG-----IVTSSSIKVAGDKFDEAIIRY 189 (336)
T ss_pred HHcCCCceEecccHHHHHHHcCCccc----CCCeEEEEEeCCCeEEEEEEEeCC-----EEEeCCcCCHHHHHHHHHHHH
Confidence 99999999999999999999987543 456799999999999999998754 224567899999999999999
Q ss_pred HHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHccCCC----ceEEEEc--ccccCeeEEEEEcHHHHHHHHHHHHhHHH
Q 043296 247 FVAEFRRKHKKDISGNARALRRLRTACERAKRTLSSTT----QTTIEID--SLYEGIDFYATITRARFEELNMDLFRKCM 320 (650)
Q Consensus 247 l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~----~~~~~i~--~~~~~~~~~~~itr~~fe~~~~~~~~~i~ 320 (650)
+.++|... .. ...||++|+.++... ...+.+. .+..+.+..+.|+|++|++++.++++++.
T Consensus 190 l~~~~~~~----~~---------~~~ae~lK~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~i~~~~~~eii~~~~~~i~ 256 (336)
T PRK13928 190 IRKKYKLL----IG---------ERTAEEIKIKIGTAFPGAREEEMEIRGRDLVTGLPKTITVTSEEIREALKEPVSAIV 256 (336)
T ss_pred HHHHhchh----cC---------HHHHHHHHHHhcccccccCCcEEEEecccccCCCceEEEECHHHHHHHHHHHHHHHH
Confidence 98766421 11 357999999987531 1233332 23445667789999999999999999999
Q ss_pred HHHHHHHHhcC--CCCCCCC-eEEEEcCccCcHHHHHHHHhhhCCccccccCCcchhHHhHHHHHHHHH
Q 043296 321 EPVEKCLRDSK--IDKSLVH-DIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAIL 386 (650)
Q Consensus 321 ~~i~~~l~~~~--~~~~~i~-~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~p~~ava~GAa~~a~~~ 386 (650)
..|++.|+.++ +....++ .|+|+||+|++|.|++.|++.| +.++....||+++||+|||+++..+
T Consensus 257 ~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~-~~~v~~~~~P~~ava~Gaa~~~~~~ 324 (336)
T PRK13928 257 QAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEET-KVPVYIAEDPISCVALGTGKMLENI 324 (336)
T ss_pred HHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHH-CCCceecCCHHHHHHHHHHHHHhch
Confidence 99999999986 3445677 7999999999999999999999 5788888899999999999998764
No 22
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=100.00 E-value=3.1e-38 Score=328.55 Aligned_cols=306 Identities=25% Similarity=0.387 Sum_probs=243.2
Q ss_pred cEEEEEcCcceeEEEEEECCeeEEEecCCCCcccceEEEEcCC-c--EEecHHHHHhHhhCcCchhhhhhHhcCCCCCCh
Q 043296 8 KAIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDT-E--RLIGDAAKNQVAMNPQNTVFDAKRLIGRRFSDP 84 (650)
Q Consensus 8 ~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~-~--~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~ 84 (650)
..+||||||+|+++ +.+++.. +.| .||+|+++.+ . ..+|.+|+.+..++|.++... +
T Consensus 5 ~~~giDlGt~~~~i--~~~~~~~-~~~------~ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~--~--------- 64 (335)
T PRK13929 5 TEIGIDLGTANILV--YSKNKGI-ILN------EPSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAV--R--------- 64 (335)
T ss_pred CeEEEEcccccEEE--EECCCcE-Eec------CCcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEE--e---------
Confidence 36999999999985 4445432 333 5999999753 2 579999999988888876431 1
Q ss_pred hhhhhcccCCeEEEeCCCCCceEEEEECCcceEecHHHHHHHHHHHHHHHHHHHhcCCCC--cEEEEeCCCCCHHHHHHH
Q 043296 85 SVQSDMRHWPFKVASGPGDKPMIAVTYKGEEKRFSPEEISSMVLTKMKEIAEAYLGHAVK--NAVVTVPAYFNDSQRQAT 162 (650)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~--~~VitVPa~~~~~qr~~l 162 (650)
|++ + ..+..-++++.+|++++..++..++..+. .+|||||++|+..||+++
T Consensus 65 ---------pi~-----~-------------G~I~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l 117 (335)
T PRK13929 65 ---------PMK-----D-------------GVIADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAI 117 (335)
T ss_pred ---------cCC-----C-------------CccCCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHH
Confidence 110 0 11223378899999999998888876554 799999999999999999
Q ss_pred HHHHHHcCCceeeecchhHHHHHhcccccccCCCCCceEEEEEeCCcceEEEEEEEeCCEEEEEEeeCCCCCChhHHHHH
Q 043296 163 KDAGAIAGLNVMRIINEPTAAAIAYGLDKKASRTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNR 242 (650)
Q Consensus 163 ~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~ 242 (650)
.+|++.||++.+.+++||+|||++|+.... ++..++|+|+||||||++++++.. ....++..+||++||+.
T Consensus 118 ~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~----~~~~~lvvDiG~gtt~v~vi~~~~-----~~~~~~~~~GG~~id~~ 188 (335)
T PRK13929 118 SDAVKNCGAKNVHLIEEPVAAAIGADLPVD----EPVANVVVDIGGGTTEVAIISFGG-----VVSCHSIRIGGDQLDED 188 (335)
T ss_pred HHHHHHcCCCeeEeecCHHHHHHhcCCCcC----CCceEEEEEeCCCeEEEEEEEeCC-----EEEecCcCCHHHHHHHH
Confidence 999999999999999999999999976543 467899999999999999998654 22345678999999999
Q ss_pred HHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHccCCC----ceEEEEc--ccccCeeEEEEEcHHHHHHHHHHHH
Q 043296 243 LVNHFVAEFRRKHKKDISGNARALRRLRTACERAKRTLSSTT----QTTIEID--SLYEGIDFYATITRARFEELNMDLF 316 (650)
Q Consensus 243 l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~----~~~~~i~--~~~~~~~~~~~itr~~fe~~~~~~~ 316 (650)
|.+++.+.+ +.... ...||++|+.++... ...+.+. .+..+.+..+.+++++|+++|.+++
T Consensus 189 l~~~l~~~~----~~~~~---------~~~AE~iK~~l~~~~~~~~~~~~~v~g~~~~~~~p~~i~i~~~~~~~~i~~~l 255 (335)
T PRK13929 189 IVSFVRKKY----NLLIG---------ERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPKTITLESKEIQGAMRESL 255 (335)
T ss_pred HHHHHHHHh----CcCcC---------HHHHHHHHHHHcCCCCCCCCceEEEeCCccCCCCCeEEEEcHHHHHHHHHHHH
Confidence 999987654 22221 257999999998632 2223332 2334556789999999999999999
Q ss_pred hHHHHHHHHHHHhcCCC--CCCCC-eEEEEcCccCcHHHHHHHHhhhCCccccccCCcchhHHhHHHHHH
Q 043296 317 RKCMEPVEKCLRDSKID--KSLVH-DIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQA 383 (650)
Q Consensus 317 ~~i~~~i~~~l~~~~~~--~~~i~-~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~p~~ava~GAa~~a 383 (650)
.++...|.+.|+++... ...++ .|+|+||+|++|.+.+.|++.| +.++....||+++||.||+..-
T Consensus 256 ~~i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~-~~~v~~~~~P~~~Va~Ga~~~~ 324 (335)
T PRK13929 256 LHILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEI-VVPVHVAANPLESVAIGTGRSL 324 (335)
T ss_pred HHHHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHH-CCCceeCCCHHHHHHHHHHHHH
Confidence 99999999999998643 35677 6999999999999999999999 5788888899999999999874
No 23
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=3.5e-36 Score=314.81 Aligned_cols=308 Identities=24% Similarity=0.385 Sum_probs=230.1
Q ss_pred CcEEEEEcCcceeEEEEEECCeeEEEecCCCCcccceEEEEcCC-c--EEecHHHHHhHhhCcCchhhhhhHhcCCCCCC
Q 043296 7 GKAIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDT-E--RLIGDAAKNQVAMNPQNTVFDAKRLIGRRFSD 83 (650)
Q Consensus 7 ~~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~-~--~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~ 83 (650)
+..|||||||++++++....+ . ++ .+||+|++... + .++|.+|..+..+.|.++...
T Consensus 5 ~~~igIDlGt~~~~i~~~~~~-~-~~-------~~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~~~~----------- 64 (334)
T PRK13927 5 SNDLGIDLGTANTLVYVKGKG-I-VL-------NEPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNIVAI----------- 64 (334)
T ss_pred cceeEEEcCcceEEEEECCCc-E-EE-------ecCCEEEEECCCCeEEEecHHHHHHhhcCCCCEEEE-----------
Confidence 346999999999998543322 2 22 38999999754 2 489999998876666553210
Q ss_pred hhhhhhcccCCeEEEeCCCCCceEEEEECCcceEecHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHH
Q 043296 84 PSVQSDMRHWPFKVASGPGDKPMIAVTYKGEEKRFSPEEISSMVLTKMKEIAEAYLGHAVKNAVVTVPAYFNDSQRQATK 163 (650)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~ 163 (650)
+|+ .+ | .+.--+....+++++........ .....+|||||++|+..+|++++
T Consensus 65 ---------~pi-----~~----------G---~i~d~~~~~~ll~~~~~~~~~~~-~~~~~~vi~vP~~~~~~~r~~~~ 116 (334)
T PRK13927 65 ---------RPM-----KD----------G---VIADFDVTEKMLKYFIKKVHKNF-RPSPRVVICVPSGITEVERRAVR 116 (334)
T ss_pred ---------ecC-----CC----------C---eecCHHHHHHHHHHHHHHHhhcc-CCCCcEEEEeCCCCCHHHHHHHH
Confidence 111 00 0 11111334455555554433322 11247999999999999999999
Q ss_pred HHHHHcCCceeeecchhHHHHHhcccccccCCCCCceEEEEEeCCcceEEEEEEEeCCEEEEEEeeCCCCCChhHHHHHH
Q 043296 164 DAGAIAGLNVMRIINEPTAAAIAYGLDKKASRTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRL 243 (650)
Q Consensus 164 ~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l 243 (650)
+|++.||++.+.+++||+|||++|+.... .+..++|||+||||||+++++... ....+..++||++||+.|
T Consensus 117 ~a~~~ag~~~~~li~ep~aaa~~~g~~~~----~~~~~lvvDiGggttdvs~v~~~~-----~~~~~~~~lGG~~id~~l 187 (334)
T PRK13927 117 ESALGAGAREVYLIEEPMAAAIGAGLPVT----EPTGSMVVDIGGGTTEVAVISLGG-----IVYSKSVRVGGDKFDEAI 187 (334)
T ss_pred HHHHHcCCCeeccCCChHHHHHHcCCccc----CCCeEEEEEeCCCeEEEEEEecCC-----eEeeCCcCChHHHHHHHH
Confidence 99999999999999999999999987543 356789999999999999998765 223455789999999999
Q ss_pred HHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHccCCCc----eEEEE--cccccCeeEEEEEcHHHHHHHHHHHHh
Q 043296 244 VNHFVAEFRRKHKKDISGNARALRRLRTACERAKRTLSSTTQ----TTIEI--DSLYEGIDFYATITRARFEELNMDLFR 317 (650)
Q Consensus 244 ~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~----~~~~i--~~~~~~~~~~~~itr~~fe~~~~~~~~ 317 (650)
.+++.+++. .... ...||++|+.++.... ..+.+ +.+..+.+..+.|+|++|++++.+.+.
T Consensus 188 ~~~l~~~~~----~~~~---------~~~ae~iK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~ 254 (334)
T PRK13927 188 INYVRRNYN----LLIG---------ERTAERIKIEIGSAYPGDEVLEMEVRGRDLVTGLPKTITISSNEIREALQEPLS 254 (334)
T ss_pred HHHHHHHhC----cCcC---------HHHHHHHHHHhhccCCCCCCceEEEeCcccCCCCCeEEEECHHHHHHHHHHHHH
Confidence 999876553 2211 2468999999885432 22333 233445667889999999999999999
Q ss_pred HHHHHHHHHHHhcCCC--CCCCC-eEEEEcCccCcHHHHHHHHhhhCCccccccCCcchhHHhHHHHHHHH
Q 043296 318 KCMEPVEKCLRDSKID--KSLVH-DIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAI 385 (650)
Q Consensus 318 ~i~~~i~~~l~~~~~~--~~~i~-~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~p~~ava~GAa~~a~~ 385 (650)
++.+.|.++|+++... ...++ .|+|+||+|++|.|++.|++.| +.++....||+++||+||++++..
T Consensus 255 ~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~-~~~v~~~~~P~~ava~Ga~~~~~~ 324 (334)
T PRK13927 255 AIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEET-GLPVHVAEDPLTCVARGTGKALEN 324 (334)
T ss_pred HHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHH-CCCcEecCCHHHHHHHHHHHHHhh
Confidence 9999999999988643 23344 5999999999999999999999 578888889999999999999865
No 24
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=100.00 E-value=4.7e-36 Score=313.19 Aligned_cols=307 Identities=25% Similarity=0.355 Sum_probs=227.3
Q ss_pred EEEEEcCcceeEEEEEECCeeEEEecCCCCcccceEEEEcCC-----c--EEecHHHHHhHhhCcCchhhhhhHhcCCCC
Q 043296 9 AIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDT-----E--RLIGDAAKNQVAMNPQNTVFDAKRLIGRRF 81 (650)
Q Consensus 9 vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~-----~--~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~ 81 (650)
-|||||||+||.++....|. ++ ..||+|+|.++ + ..+|.+|+....+.|.+... ++-+
T Consensus 4 ~~giDlGt~~s~i~~~~~~~--~~-------~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~~--~~pi---- 68 (333)
T TIGR00904 4 DIGIDLGTANTLVYVKGRGI--VL-------NEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIVA--IRPM---- 68 (333)
T ss_pred eeEEecCcceEEEEECCCCE--EE-------ecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEEE--EecC----
Confidence 39999999999998754332 22 48999999743 3 67999998876666655321 1111
Q ss_pred CChhhhhhcccCCeEEEeCCCCCceEEEEECCcceEecHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHH
Q 043296 82 SDPSVQSDMRHWPFKVASGPGDKPMIAVTYKGEEKRFSPEEISSMVLTKMKEIAEAYLGHAVKNAVVTVPAYFNDSQRQA 161 (650)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~ 161 (650)
.++ .+..-+....+++++........+.....+|+|||++|+..+|++
T Consensus 69 -------------------~~G-------------~i~d~~~~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~ 116 (333)
T TIGR00904 69 -------------------KDG-------------VIADFEVTEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRA 116 (333)
T ss_pred -------------------CCC-------------EEEcHHHHHHHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHH
Confidence 000 111113344455555444332222222379999999999999999
Q ss_pred HHHHHHHcCCceeeecchhHHHHHhcccccccCCCCCceEEEEEeCCcceEEEEEEEeCCEEEEEEeeCCCCCChhHHHH
Q 043296 162 TKDAGAIAGLNVMRIINEPTAAAIAYGLDKKASRTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDN 241 (650)
Q Consensus 162 l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~ 241 (650)
+++|++.||++.+.+++||+|||++|+.... ++..++|||+||||||+++++..+ ....++.++||++||+
T Consensus 117 ~~~~~~~ag~~~~~li~ep~aaa~~~g~~~~----~~~~~lVvDiG~gttdvs~v~~~~-----~~~~~~~~lGG~did~ 187 (333)
T TIGR00904 117 VKESALSAGAREVYLIEEPMAAAIGAGLPVE----EPTGSMVVDIGGGTTEVAVISLGG-----IVVSRSIRVGGDEFDE 187 (333)
T ss_pred HHHHHHHcCCCeEEEecCHHHHHHhcCCccc----CCceEEEEEcCCCeEEEEEEEeCC-----EEecCCccchHHHHHH
Confidence 9999999999999999999999999986443 456789999999999999998765 2234567899999999
Q ss_pred HHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHccCCCc-----eEEEEcc--cccCeeEEEEEcHHHHHHHHHH
Q 043296 242 RLVNHFVAEFRRKHKKDISGNARALRRLRTACERAKRTLSSTTQ-----TTIEIDS--LYEGIDFYATITRARFEELNMD 314 (650)
Q Consensus 242 ~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~-----~~~~i~~--~~~~~~~~~~itr~~fe~~~~~ 314 (650)
.|++++.+++. .... +..||++|+.++.... ..+.+.. ...+......|++++|.+++.+
T Consensus 188 ~l~~~l~~~~~----~~~~---------~~~ae~lK~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~ 254 (333)
T TIGR00904 188 AIINYIRRTYN----LLIG---------EQTAERIKIEIGSAYPLNDEPRKMEVRGRDLVTGLPRTIEITSVEVREALQE 254 (333)
T ss_pred HHHHHHHHHhc----ccCC---------HHHHHHHHHHHhccccccccccceeecCccccCCCCeEEEECHHHHHHHHHH
Confidence 99999876552 2221 3579999999976322 1222211 1123345678999999999999
Q ss_pred HHhHHHHHHHHHHHhcCCCC-CC-CC-eEEEEcCccCcHHHHHHHHhhhCCccccccCCcchhHHhHHHHHHHH
Q 043296 315 LFRKCMEPVEKCLRDSKIDK-SL-VH-DIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAI 385 (650)
Q Consensus 315 ~~~~i~~~i~~~l~~~~~~~-~~-i~-~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~p~~ava~GAa~~a~~ 385 (650)
.+.++.+.|.+.|+.+.... .+ ++ .|+|+||+|++|.+++.|++.| +.++....||+++||.||+++...
T Consensus 255 ~~~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~-~~~v~~~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 255 PVNQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKET-GLPVIVADDPLLCVAKGTGKALED 327 (333)
T ss_pred HHHHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHH-CCCceecCChHHHHHHHHHHHHhC
Confidence 99999999999999876432 23 33 6999999999999999999999 578888899999999999998653
No 25
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=5.5e-35 Score=306.24 Aligned_cols=308 Identities=24% Similarity=0.346 Sum_probs=233.4
Q ss_pred cEEEEEcCcceeEEEEEECCeeEEEecCCCCcccceEEEEcC---CcEEecHHHHHhHhhCcCchhhhhhHhcCCCCCCh
Q 043296 8 KAIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTD---TERLIGDAAKNQVAMNPQNTVFDAKRLIGRRFSDP 84 (650)
Q Consensus 8 ~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~---~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~ 84 (650)
..+||||||++|++++...+ + ++ .+||+|++.+ ...++|.+|.......|.+... +
T Consensus 9 ~~vgiDlGt~~t~i~~~~~~-~-~~-------~~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~~--~---------- 67 (335)
T PRK13930 9 KDIGIDLGTANTLVYVKGKG-I-VL-------NEPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNIEA--I---------- 67 (335)
T ss_pred cceEEEcCCCcEEEEECCCC-E-EE-------ecCCEEEEECCCCeEEEEcHHHHHhhhcCCCCeEE--e----------
Confidence 35999999999999887333 2 22 2699999974 2368999998776555543210 0
Q ss_pred hhhhhcccCCeEEEeCCCCCceEEEEECCcceEecHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHH
Q 043296 85 SVQSDMRHWPFKVASGPGDKPMIAVTYKGEEKRFSPEEISSMVLTKMKEIAEAYLGHAVKNAVVTVPAYFNDSQRQATKD 164 (650)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~ 164 (650)
+|+ .+ ..+..-+....+++++.+.+..........+|+|+|++|+..+|+.+.+
T Consensus 68 --------~pi-----~~-------------G~i~d~~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~ 121 (335)
T PRK13930 68 --------RPL-----KD-------------GVIADFEATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVRE 121 (335)
T ss_pred --------ecC-----CC-------------CeEcCHHHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHH
Confidence 111 00 1112234567777777766555444456789999999999999999999
Q ss_pred HHHHcCCceeeecchhHHHHHhcccccccCCCCCceEEEEEeCCcceEEEEEEEeCCEEEEEEeeCCCCCChhHHHHHHH
Q 043296 165 AGAIAGLNVMRIINEPTAAAIAYGLDKKASRTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLV 244 (650)
Q Consensus 165 Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~ 244 (650)
|++.+|++.+.+++||+|||++|+.... +...++|||+||||||++++..... ...+...+||.+||+.|.
T Consensus 122 ~~e~~g~~~~~lv~ep~AAa~a~g~~~~----~~~~~lVvDiG~gttdvs~v~~g~~-----~~~~~~~lGG~~id~~l~ 192 (335)
T PRK13930 122 AAEHAGAREVYLIEEPMAAAIGAGLPVT----EPVGNMVVDIGGGTTEVAVISLGGI-----VYSESIRVAGDEMDEAIV 192 (335)
T ss_pred HHHHcCCCeEEecccHHHHHHhcCCCcC----CCCceEEEEeCCCeEEEEEEEeCCE-----EeecCcCchhHHHHHHHH
Confidence 9999999999999999999999976543 3456799999999999999986542 235668999999999999
Q ss_pred HHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHccCCCc----eEEEEc--ccccCeeEEEEEcHHHHHHHHHHHHhH
Q 043296 245 NHFVAEFRRKHKKDISGNARALRRLRTACERAKRTLSSTTQ----TTIEID--SLYEGIDFYATITRARFEELNMDLFRK 318 (650)
Q Consensus 245 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~----~~~~i~--~~~~~~~~~~~itr~~fe~~~~~~~~~ 318 (650)
+++.+++. .... ...||++|+.++.... ..+.+. .+..+.+..+.|++++|++++.+.+++
T Consensus 193 ~~l~~~~~----~~~~---------~~~ae~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~ 259 (335)
T PRK13930 193 QYVRRKYN----LLIG---------ERTAEEIKIEIGSAYPLDEEESMEVRGRDLVTGLPKTIEISSEEVREALAEPLQQ 259 (335)
T ss_pred HHHHHHhC----CCCC---------HHHHHHHHHHhhcCcCCCCCceEEEECccCCCCCCeeEEECHHHHHHHHHHHHHH
Confidence 99877642 2221 2579999999976432 123332 223345567899999999999999999
Q ss_pred HHHHHHHHHHhcCCC--CCCCCe-EEEEcCccCcHHHHHHHHhhhCCccccccCCcchhHHhHHHHHHHH
Q 043296 319 CMEPVEKCLRDSKID--KSLVHD-IVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAI 385 (650)
Q Consensus 319 i~~~i~~~l~~~~~~--~~~i~~-V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~p~~ava~GAa~~a~~ 385 (650)
+.+.|.++|+.+... ...++. |+|+||+|++|.+++.|++.| +.++....+|+++||+||++.+..
T Consensus 260 i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~-~~~v~~~~~p~~ava~Ga~~~~~~ 328 (335)
T PRK13930 260 IVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEET-GLPVHIAEDPLTCVARGTGKALEN 328 (335)
T ss_pred HHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHH-CCCceecCCHHHHHHHHHHHHHhC
Confidence 999999999987533 233454 999999999999999999999 577888889999999999999764
No 26
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=100.00 E-value=2.3e-31 Score=269.88 Aligned_cols=306 Identities=25% Similarity=0.368 Sum_probs=220.5
Q ss_pred cEEEEEcCcceeEEEEEECCeeEEEecCCCCcccceEEEEcCC---cEEecHHHHHhHhhCcCchhhhhhHhcCCCCCCh
Q 043296 8 KAIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDT---ERLIGDAAKNQVAMNPQNTVFDAKRLIGRRFSDP 84 (650)
Q Consensus 8 ~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~---~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~ 84 (650)
.-+||||||+++.++.-..|.+ ...||+|+|... -..+|.+|+....+.|.+...
T Consensus 2 ~~igIDLGT~~t~i~~~~~Giv---------~~epSvVA~~~~~~~i~avG~~A~~m~gktp~~i~~------------- 59 (326)
T PF06723_consen 2 KDIGIDLGTSNTRIYVKGKGIV---------LNEPSVVAYDKDTGKILAVGDEAKAMLGKTPDNIEV------------- 59 (326)
T ss_dssp SEEEEEE-SSEEEEEETTTEEE---------EEEES-EEEETTT--EEEESHHHHTTTTS-GTTEEE-------------
T ss_pred CceEEecCcccEEEEECCCCEE---------EecCcEEEEECCCCeEEEEhHHHHHHhhcCCCccEE-------------
Confidence 3699999999999954333322 245999999864 345899998877766665311
Q ss_pred hhhhhcccCCeEEEeCCCCCceEEEEECCcceEecHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHH
Q 043296 85 SVQSDMRHWPFKVASGPGDKPMIAVTYKGEEKRFSPEEISSMVLTKMKEIAEAYLGHAVKNAVVTVPAYFNDSQRQATKD 164 (650)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~ 164 (650)
.+|. ....+.--++...+|+++.+.+.......-..++|+||+.-++.+|+++.+
T Consensus 60 -------~~Pl------------------~~GvI~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~ 114 (326)
T PF06723_consen 60 -------VRPL------------------KDGVIADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALID 114 (326)
T ss_dssp -------E-SE------------------ETTEESSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHH
T ss_pred -------Eccc------------------cCCcccCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHH
Confidence 0111 112344456778888888877765433445678999999999999999999
Q ss_pred HHHHcCCceeeecchhHHHHHhcccccccCCCCCceEEEEEeCCcceEEEEEEEeCCEEEEEEeeCCCCCChhHHHHHHH
Q 043296 165 AGAIAGLNVMRIINEPTAAAIAYGLDKKASRTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLV 244 (650)
Q Consensus 165 Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~ 244 (650)
|+..||.+.+.|+.||.|||+..+++-. ++...||+|+||||||++++.... +........||++||+.|.
T Consensus 115 a~~~aGa~~V~li~ep~AaAiGaGl~i~----~~~g~miVDIG~GtTdiavislgg-----iv~s~si~~gG~~~DeaI~ 185 (326)
T PF06723_consen 115 AARQAGARKVYLIEEPIAAAIGAGLDIF----EPRGSMIVDIGGGTTDIAVISLGG-----IVASRSIRIGGDDIDEAII 185 (326)
T ss_dssp HHHHTT-SEEEEEEHHHHHHHHTT--TT----SSS-EEEEEE-SS-EEEEEEETTE-----EEEEEEES-SHHHHHHHHH
T ss_pred HHHHcCCCEEEEecchHHHHhcCCCCCC----CCCceEEEEECCCeEEEEEEECCC-----EEEEEEEEecCcchhHHHH
Confidence 9999999999999999999999987654 477899999999999999997544 2223336899999999999
Q ss_pred HHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHccCCC----ceEEEE--cccccCeeEEEEEcHHHHHHHHHHHHhH
Q 043296 245 NHFVAEFRRKHKKDISGNARALRRLRTACERAKRTLSSTT----QTTIEI--DSLYEGIDFYATITRARFEELNMDLFRK 318 (650)
Q Consensus 245 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~----~~~~~i--~~~~~~~~~~~~itr~~fe~~~~~~~~~ 318 (650)
+|+.++|. ..+. ...||++|+.++... ...+.+ ..+..|....+.|+-+++.+.+.+.+.+
T Consensus 186 ~~ir~~y~----l~Ig---------~~tAE~iK~~~g~~~~~~~~~~~~v~Grd~~tGlP~~~~i~~~ev~~ai~~~~~~ 252 (326)
T PF06723_consen 186 RYIREKYN----LLIG---------ERTAEKIKIEIGSASPPEEEESMEVRGRDLITGLPKSIEITSSEVREAIEPPVDQ 252 (326)
T ss_dssp HHHHHHHS----EE-----------HHHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHH
T ss_pred HHHHHhhC----cccC---------HHHHHHHHHhcceeeccCCCceEEEECccccCCCcEEEEEcHHHHHHHHHHHHHH
Confidence 99988764 2222 468999999988642 223444 3466788899999999999999999999
Q ss_pred HHHHHHHHHHhcCCCC-CCC--CeEEEEcCccCcHHHHHHHHhhhCCccccccCCcchhHHhHHHHHH
Q 043296 319 CMEPVEKCLRDSKIDK-SLV--HDIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQA 383 (650)
Q Consensus 319 i~~~i~~~l~~~~~~~-~~i--~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~p~~ava~GAa~~a 383 (650)
|.+.|+++|+...-.. .|| +.|+|+||+|+++.+.+.|++.+ +.++....||..+||.||....
T Consensus 253 I~~~i~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~-~~pV~va~~P~~~va~G~~~~l 319 (326)
T PF06723_consen 253 IVEAIKEVLEKTPPELAADILENGIVLTGGGALLRGLDEYISEET-GVPVRVADDPLTAVARGAGKLL 319 (326)
T ss_dssp HHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHH-SS-EEE-SSTTTHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHHHHHHHH-CCCEEEcCCHHHHHHHHHHHHH
Confidence 9999999999753211 022 46999999999999999999999 6899999999999999998754
No 27
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.97 E-value=3.1e-30 Score=254.27 Aligned_cols=203 Identities=22% Similarity=0.324 Sum_probs=174.6
Q ss_pred ecHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeecchhHHHHHhcccccccCCCC
Q 043296 118 FSPEEISSMVLTKMKEIAEAYLGHAVKNAVVTVPAYFNDSQRQATKDAGAIAGLNVMRIINEPTAAAIAYGLDKKASRTG 197 (650)
Q Consensus 118 ~~~~~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~ 197 (650)
+.--+..+++|+++++.++.+++.++.++|+|||++|++.||+++.+|++.||++++.+++||.|||++|...
T Consensus 36 I~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~------- 108 (239)
T TIGR02529 36 VVDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK------- 108 (239)
T ss_pred EEEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcCC-------
Confidence 4455778999999999999999999999999999999999999999999999999999999999999988542
Q ss_pred CceEEEEEeCCcceEEEEEEEeCCEEEEEEeeCCCCCChhHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHH
Q 043296 198 EKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVAEFRRKHKKDISGNARALRRLRTACERAK 277 (650)
Q Consensus 198 ~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K 277 (650)
..+|+|+||||||+++++. +.+ + ..++..+||++||+.|.+.+ +++ +.+||++|
T Consensus 109 --~~~vvDiGggtt~i~i~~~--G~i--~-~~~~~~~GG~~it~~Ia~~~--------~i~-----------~~~AE~~K 162 (239)
T TIGR02529 109 --NGAVVDVGGGTTGISILKK--GKV--I-YSADEPTGGTHMSLVLAGAY--------GIS-----------FEEAEEYK 162 (239)
T ss_pred --CcEEEEeCCCcEEEEEEEC--CeE--E-EEEeeecchHHHHHHHHHHh--------CCC-----------HHHHHHHH
Confidence 2599999999999999864 332 2 23457899999999887654 222 36899999
Q ss_pred HHccCCCceEEEEcccccCeeEEEEEcHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCeEEEEcCccCcHHHHHHHH
Q 043296 278 RTLSSTTQTTIEIDSLYEGIDFYATITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSLVHDIVLVGGSTRIPKVQQLLQ 357 (650)
Q Consensus 278 ~~ls~~~~~~~~i~~~~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~ 357 (650)
+.++. .+++.+++.++++++...+++.|++. .++.|+|+||+|++|.|++.|+
T Consensus 163 ~~~~~----------------------~~~~~~~i~~~~~~i~~~i~~~l~~~-----~~~~v~LtGG~a~ipgl~e~l~ 215 (239)
T TIGR02529 163 RGHKD----------------------EEEIFPVVKPVYQKMASIVKRHIEGQ-----GVKDLYLVGGACSFSGFADVFE 215 (239)
T ss_pred HhcCC----------------------HHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCEEEEECchhcchhHHHHHH
Confidence 87541 45678899999999999999999864 3578999999999999999999
Q ss_pred hhhCCccccccCCcchhHHhHHHH
Q 043296 358 DFFNGKELCKSINPDEAVAYGAAV 381 (650)
Q Consensus 358 ~~f~~~~i~~~~~p~~ava~GAa~ 381 (650)
+.| +.++..+.||++++|.|||+
T Consensus 216 ~~l-g~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 216 KQL-GLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred HHh-CCCcccCCCCCeehhheeec
Confidence 999 68888899999999999986
No 28
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.97 E-value=3.7e-28 Score=235.86 Aligned_cols=311 Identities=24% Similarity=0.355 Sum_probs=242.5
Q ss_pred CcEEEEEcCcceeEEEEEECCeeEEEecCCCCcccceEEEEcC--C---cEEecHHHHHhHhhCcCchhhhhhHhcCCCC
Q 043296 7 GKAIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTD--T---ERLIGDAAKNQVAMNPQNTVFDAKRLIGRRF 81 (650)
Q Consensus 7 ~~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~--~---~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~ 81 (650)
+..|||||||.|+.|..-..| ++. .-||+|++.. + -..+|.+|+...-+.|.+...
T Consensus 6 s~diGIDLGTanTlV~~k~kg---IVl------~ePSVVAi~~~~~~~~v~aVG~eAK~MlGrTP~ni~a---------- 66 (342)
T COG1077 6 SNDIGIDLGTANTLVYVKGKG---IVL------NEPSVVAIESEGKTKVVLAVGEEAKQMLGRTPGNIVA---------- 66 (342)
T ss_pred cccceeeecccceEEEEcCce---EEe------cCceEEEEeecCCCceEEEehHHHHHHhccCCCCceE----------
Confidence 358999999999999765333 233 4699999976 2 245899998887777776421
Q ss_pred CChhhhhhcccCCeEEEeCCCCCceEEEEECCcceEecHHHHHHHHHHHHHHHHHHHhc-CCCCcEEEEeCCCCCHHHHH
Q 043296 82 SDPSVQSDMRHWPFKVASGPGDKPMIAVTYKGEEKRFSPEEISSMVLTKMKEIAEAYLG-HAVKNAVVTVPAYFNDSQRQ 160 (650)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~-~~~~~~VitVPa~~~~~qr~ 160 (650)
+.+.. +..+.--++...+|+|+.+....... .....++|+||..-++.+|+
T Consensus 67 ---------------iRPmk-------------dGVIAd~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErr 118 (342)
T COG1077 67 ---------------IRPMK-------------DGVIADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERR 118 (342)
T ss_pred ---------------EeecC-------------CcEeecHHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHH
Confidence 00001 12344556777888888887764333 34456899999999999999
Q ss_pred HHHHHHHHcCCceeeecchhHHHHHhcccccccCCCCCceEEEEEeCCcceEEEEEEEeCCEEEEEEeeCCCCCChhHHH
Q 043296 161 ATKDAGAIAGLNVMRIINEPTAAAIAYGLDKKASRTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFD 240 (650)
Q Consensus 161 ~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d 240 (650)
++++|++.||.+.+.++.||.|||+..++.-. ++..-||||+||||||++++.+.+ +.+.....+||+.||
T Consensus 119 Ai~ea~~~aGa~~V~lieEp~aAAIGaglpi~----ep~G~mvvDIGgGTTevaVISlgg-----iv~~~Sirv~GD~~D 189 (342)
T COG1077 119 AIKEAAESAGAREVYLIEEPMAAAIGAGLPIM----EPTGSMVVDIGGGTTEVAVISLGG-----IVSSSSVRVGGDKMD 189 (342)
T ss_pred HHHHHHHhccCceEEEeccHHHHHhcCCCccc----CCCCCEEEEeCCCceeEEEEEecC-----EEEEeeEEEecchhh
Confidence 99999999999999999999999998876554 455679999999999999999877 445555789999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHccCCC--------ceEEEEcccccCeeEEEEEcHHHHHHHH
Q 043296 241 NRLVNHFVAEFRRKHKKDISGNARALRRLRTACERAKRTLSSTT--------QTTIEIDSLYEGIDFYATITRARFEELN 312 (650)
Q Consensus 241 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~--------~~~~~i~~~~~~~~~~~~itr~~fe~~~ 312 (650)
+.+.+|+.++|+ ..+. ...+|++|....... +..+.-..+..|....++++-++..+.+
T Consensus 190 e~Ii~yvr~~~n----l~IG---------e~taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~GlPk~i~i~s~ev~eal 256 (342)
T COG1077 190 EAIIVYVRKKYN----LLIG---------ERTAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTGLPKTITINSEEIAEAL 256 (342)
T ss_pred HHHHHHHHHHhC----eeec---------HHHHHHHHHHhcccccccCCccceeeEEeeecccCCCeeEEEcHHHHHHHH
Confidence 999999877654 3333 235888888875432 2334445566778888999999999999
Q ss_pred HHHHhHHHHHHHHHHHhcC--CCCCCCCe-EEEEcCccCcHHHHHHHHhhhCCccccccCCcchhHHhHHHHHHHHHc
Q 043296 313 MDLFRKCMEPVEKCLRDSK--IDKSLVHD-IVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILS 387 (650)
Q Consensus 313 ~~~~~~i~~~i~~~l~~~~--~~~~~i~~-V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~p~~ava~GAa~~a~~~~ 387 (650)
++.+++|++.++..|++.. +..+-++. ++|+||+|.+..+.+.|++.. +.++....+|-.|||+|+......+.
T Consensus 257 ~~~v~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et-~~pv~ia~~pL~~Va~G~G~~le~~~ 333 (342)
T COG1077 257 EEPLNGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEET-GVPVIIADDPLTCVAKGTGKALEALD 333 (342)
T ss_pred HHHHHHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhcc-CCeEEECCChHHHHHhccchhhhhhH
Confidence 9999999999999999853 22334555 999999999999999999998 67888889999999999998777654
No 29
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.96 E-value=3.5e-27 Score=236.81 Aligned_cols=202 Identities=25% Similarity=0.366 Sum_probs=174.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeecchhHHHHHhcccccccCCCCCce
Q 043296 121 EEISSMVLTKMKEIAEAYLGHAVKNAVVTVPAYFNDSQRQATKDAGAIAGLNVMRIINEPTAAAIAYGLDKKASRTGEKN 200 (650)
Q Consensus 121 ~~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~ 200 (650)
.+.....|+++++.++.+++..+..++++||++|+..+|+++.+|++.||+++..+++||.|++.+|... .
T Consensus 66 i~~a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~---------~ 136 (267)
T PRK15080 66 FIGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID---------N 136 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCC---------C
Confidence 5567778999999999999988999999999999999999999999999999999999999999987542 1
Q ss_pred EEEEEeCCcceEEEEEEEeCCEEEEEEeeCCCCCChhHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHc
Q 043296 201 VLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVAEFRRKHKKDISGNARALRRLRTACERAKRTL 280 (650)
Q Consensus 201 vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~l 280 (650)
.+|+|+||||||++++. ++.+. ..++.++||++||+.|++++ +.+ +.+||++|+.+
T Consensus 137 ~~vvDIGggtt~i~v~~--~g~~~---~~~~~~~GG~~it~~Ia~~l--------~i~-----------~~eAE~lK~~~ 192 (267)
T PRK15080 137 GAVVDIGGGTTGISILK--DGKVV---YSADEPTGGTHMSLVLAGAY--------GIS-----------FEEAEQYKRDP 192 (267)
T ss_pred cEEEEeCCCcEEEEEEE--CCeEE---EEecccCchHHHHHHHHHHh--------CCC-----------HHHHHHHHhcc
Confidence 59999999999999975 44332 23467999999999998775 121 46789999875
Q ss_pred cCCCceEEEEcccccCeeEEEEEcHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCeEEEEcCccCcHHHHHHHHhhh
Q 043296 281 SSTTQTTIEIDSLYEGIDFYATITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSLVHDIVLVGGSTRIPKVQQLLQDFF 360 (650)
Q Consensus 281 s~~~~~~~~i~~~~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f 360 (650)
+ ++++++++++|+++++.+.+++.++.. .++.|+|+||+|++|.+++.+++.|
T Consensus 193 ~----------------------~~~~~~~ii~~~~~~i~~~i~~~l~~~-----~~~~IvLtGG~s~lpgl~e~l~~~l 245 (267)
T PRK15080 193 K----------------------HHKEIFPVVKPVVEKMASIVARHIEGQ-----DVEDIYLVGGTCCLPGFEEVFEKQT 245 (267)
T ss_pred C----------------------CHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCcccchhHHHHHHHHh
Confidence 3 357889999999999999999999864 5789999999999999999999999
Q ss_pred CCccccccCCcchhHHhHHHHHH
Q 043296 361 NGKELCKSINPDEAVAYGAAVQA 383 (650)
Q Consensus 361 ~~~~i~~~~~p~~ava~GAa~~a 383 (650)
+.++..+.||+.++|.|||+++
T Consensus 246 -g~~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 246 -GLPVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred -CCCcccCCCchHHHHHHHHhhC
Confidence 6788889999999999999874
No 30
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.91 E-value=1.1e-22 Score=215.64 Aligned_cols=194 Identities=23% Similarity=0.308 Sum_probs=152.9
Q ss_pred HHHHHHHHHHHHcCCceeeecchhHHHHHhcccccccCCCCCceEEEEEeCCcceEEEEEEEeCCEEEEEEeeCCCCCCh
Q 043296 157 SQRQATKDAGAIAGLNVMRIINEPTAAAIAYGLDKKASRTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGG 236 (650)
Q Consensus 157 ~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG 236 (650)
...+.+.+|++.||+++..++.||.|+|++|..... ....++|+|+||||||+++++. +.+.. .....+||
T Consensus 158 ~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~~----~~~~~~vvDiG~gtt~i~i~~~--g~~~~---~~~i~~GG 228 (371)
T TIGR01174 158 TILRNLVKCVERCGLEVDNIVLSGLASAIAVLTEDE----KELGVCLIDIGGGTTDIAVYTG--GSIRY---TKVIPIGG 228 (371)
T ss_pred HHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcch----hcCCEEEEEeCCCcEEEEEEEC--CEEEE---EeeecchH
Confidence 456778889999999999999999999998854322 3567999999999999999963 33322 33468999
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHccCC------CceEEEEcccccCeeEEEEEcHHHHHH
Q 043296 237 EDFDNRLVNHFVAEFRRKHKKDISGNARALRRLRTACERAKRTLSST------TQTTIEIDSLYEGIDFYATITRARFEE 310 (650)
Q Consensus 237 ~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~------~~~~~~i~~~~~~~~~~~~itr~~fe~ 310 (650)
++||+.|.+.+ + ..+.+||++|+.++.. ....+.++... .+....|+|++|++
T Consensus 229 ~~it~~i~~~l--------~-----------~~~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~is~~~l~~ 287 (371)
T TIGR01174 229 NHITKDIAKAL--------R-----------TPLEEAERIKIKYGCASIPLEGPDENIEIPSVG--ERPPRSLSRKELAE 287 (371)
T ss_pred HHHHHHHHHHh--------C-----------CCHHHHHHHHHHeeEecccCCCCCCEEEeccCC--CCCCeEEcHHHHHH
Confidence 99999987753 1 1256899999999863 23456665443 35567999999999
Q ss_pred HHHHHHhHHHHHHH-HHHHhcCCCCCCCCe-EEEEcCccCcHHHHHHHHhhhCCcccc--c----------cCCcchhHH
Q 043296 311 LNMDLFRKCMEPVE-KCLRDSKIDKSLVHD-IVLVGGSTRIPKVQQLLQDFFNGKELC--K----------SINPDEAVA 376 (650)
Q Consensus 311 ~~~~~~~~i~~~i~-~~l~~~~~~~~~i~~-V~LvGG~sr~p~v~~~l~~~f~~~~i~--~----------~~~p~~ava 376 (650)
++++.++++...|+ +.|++++.+ .+++. |+|+||+|++|.|++.+++.|+ .++. . .-+|..++|
T Consensus 288 ii~~~~~ei~~~i~~~~L~~~~~~-~~i~~gIvLtGG~S~ipgi~~~l~~~~~-~~vr~~~P~~~~~~~~~~~~p~~~~a 365 (371)
T TIGR01174 288 IIEARAEEILEIVKQKELRKSGFK-EELNGGIVLTGGGAQLEGIVELAEKVFD-NPVRIGLPQNIGGLTEDVNDPEYSTA 365 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCc-ccCCCEEEEeChHHcccCHHHHHHHHhC-CCeEEECCCccCCchhhcCCcHHHHH
Confidence 99999999999997 999998876 56776 9999999999999999999994 3321 1 126788888
Q ss_pred hHHHHH
Q 043296 377 YGAAVQ 382 (650)
Q Consensus 377 ~GAa~~ 382 (650)
.|.++|
T Consensus 366 ~Gl~~~ 371 (371)
T TIGR01174 366 VGLLLY 371 (371)
T ss_pred HHHHhC
Confidence 888764
No 31
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.90 E-value=9.8e-22 Score=210.62 Aligned_cols=196 Identities=20% Similarity=0.270 Sum_probs=149.6
Q ss_pred HHHHHHHHHHcCCceeeecchhHHHHHhcccccccCCCCCceEEEEEeCCcceEEEEEEEeCCEEEEEEeeCCCCCChhH
Q 043296 159 RQATKDAGAIAGLNVMRIINEPTAAAIAYGLDKKASRTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGED 238 (650)
Q Consensus 159 r~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~ 238 (650)
.+.+.+|++.|||++..++.||.|+|.+++.... ++..++|+|+||||||+++++ ++.+. .....++||++
T Consensus 168 ~~~~~~a~~~aGl~v~~iv~ep~Aaa~a~l~~~e----~~~gv~vvDiGggtTdisv~~--~G~l~---~~~~i~~GG~~ 238 (420)
T PRK09472 168 AKNIVKAVERCGLKVDQLIFAGLASSYAVLTEDE----RELGVCVVDIGGGTMDIAVYT--GGALR---HTKVIPYAGNV 238 (420)
T ss_pred HHHHHHHHHHcCCeEeeEEehhhHHHHHhcChhh----hhcCeEEEEeCCCceEEEEEE--CCEEE---EEeeeechHHH
Confidence 4445679999999999999999999999865432 467799999999999999997 44332 33447899999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHccCC------CceEEEEcccccCeeEEEEEcHHHHHHHH
Q 043296 239 FDNRLVNHFVAEFRRKHKKDISGNARALRRLRTACERAKRTLSST------TQTTIEIDSLYEGIDFYATITRARFEELN 312 (650)
Q Consensus 239 ~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~------~~~~~~i~~~~~~~~~~~~itr~~fe~~~ 312 (650)
|++.|+..+. .. +.+||++|+.+... ....+.++...... ...++|.+|.+++
T Consensus 239 it~dIa~~l~--------i~-----------~~~AE~lK~~~g~~~~~~~~~~~~i~v~~~~~~~--~~~i~~~~l~~ii 297 (420)
T PRK09472 239 VTSDIAYAFG--------TP-----------PSDAEAIKVRHGCALGSIVGKDESVEVPSVGGRP--PRSLQRQTLAEVI 297 (420)
T ss_pred HHHHHHHHhC--------cC-----------HHHHHHHHHhcceeccccCCCCceeEecCCCCCC--CeEEcHHHHHHHH
Confidence 9999986641 11 46899999775532 23456665433222 2488999999999
Q ss_pred HHHHhHHHHHHHH-------HHHhcCCCCCCCCeEEEEcCccCcHHHHHHHHhhhCCccccc------------cCCcch
Q 043296 313 MDLFRKCMEPVEK-------CLRDSKIDKSLVHDIVLVGGSTRIPKVQQLLQDFFNGKELCK------------SINPDE 373 (650)
Q Consensus 313 ~~~~~~i~~~i~~-------~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~------------~~~p~~ 373 (650)
.+.++++.+.|++ .+..+++....++.|+|+||+|++|.|++.+++.|+ .++.. ..+|..
T Consensus 298 ~~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~-~~vri~~P~~~~g~~~~~~~P~~ 376 (420)
T PRK09472 298 EPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFH-TQVRIGAPLNITGLTDYAQEPYY 376 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhC-CCeEEeCCcccCCChhhcCCcHH
Confidence 9977777766654 556677777789999999999999999999999994 33321 248999
Q ss_pred hHHhHHHHHHHH
Q 043296 374 AVAYGAAVQAAI 385 (650)
Q Consensus 374 ava~GAa~~a~~ 385 (650)
++|.|+++|+..
T Consensus 377 ata~Gl~~~~~~ 388 (420)
T PRK09472 377 STAVGLLHYGKE 388 (420)
T ss_pred HHHHHHHHHhhh
Confidence 999999999763
No 32
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=99.82 E-value=2.6e-18 Score=178.98 Aligned_cols=205 Identities=26% Similarity=0.381 Sum_probs=165.6
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCceeeecchhHHHHHhcccccccCCCCCceEEEEEeCCcceEEEEEEEeCCEEEEE
Q 043296 147 VVTVPAYFNDSQRQATKDAGAIAGLNVMRIINEPTAAAIAYGLDKKASRTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVK 226 (650)
Q Consensus 147 VitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~ 226 (650)
++|+|..+ -+.+.+|++.+||++..++.+|.|+|.+.+.+.. ++-.++++|+||||||+++++-.. +
T Consensus 159 vit~~~~~----~~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~dE----kelGv~lIDiG~GTTdIai~~~G~-----l 225 (418)
T COG0849 159 VITGPKNI----LENLEKCVERAGLKVDNIVLEPLASALAVLTEDE----KELGVALIDIGGGTTDIAIYKNGA-----L 225 (418)
T ss_pred EEEcchHH----HHHHHHHHHHhCCCeeeEEEehhhhhhhccCccc----HhcCeEEEEeCCCcEEEEEEECCE-----E
Confidence 56666543 6788999999999999999999999998876554 577899999999999999998433 3
Q ss_pred EeeCCCCCChhHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHccCCC------ceEEEEcccccCeeEE
Q 043296 227 ATAGDTHLGGEDFDNRLVNHFVAEFRRKHKKDISGNARALRRLRTACERAKRTLSSTT------QTTIEIDSLYEGIDFY 300 (650)
Q Consensus 227 ~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~------~~~~~i~~~~~~~~~~ 300 (650)
.+.+..++||++++..|+.-|.- + +..||++|..+.... ...+.++...+.. .
T Consensus 226 ~~~~~ipvgG~~vT~DIa~~l~t--------~-----------~~~AE~iK~~~g~a~~~~~~~~~~i~v~~vg~~~--~ 284 (418)
T COG0849 226 RYTGVIPVGGDHVTKDIAKGLKT--------P-----------FEEAERIKIKYGSALISLADDEETIEVPSVGSDI--P 284 (418)
T ss_pred EEEeeEeeCccHHHHHHHHHhCC--------C-----------HHHHHHHHHHcCccccCcCCCcceEecccCCCcc--c
Confidence 44455799999999999887522 1 468999999886543 3345665543333 6
Q ss_pred EEEcHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCeEEEEcCccCcHHHHHHHHhhhCCccc--cc----------c
Q 043296 301 ATITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSLVHDIVLVGGSTRIPKVQQLLQDFFNGKEL--CK----------S 368 (650)
Q Consensus 301 ~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i--~~----------~ 368 (650)
.++||.++.+++++.+.++..+++..|++.+........|+|+||++.+|.+.+..++.|+ .++ .. .
T Consensus 285 ~~~t~~~ls~II~aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~-~~vRig~P~~~~Gl~d~~ 363 (418)
T COG0849 285 RQVTRSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFG-RPVRLGVPLNIVGLTDIA 363 (418)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcC-CceEeCCCccccCchhhc
Confidence 7899999999999999999999999999999987788999999999999999999999994 221 11 2
Q ss_pred CCcchhHHhHHHHHHHHH
Q 043296 369 INPDEAVAYGAAVQAAIL 386 (650)
Q Consensus 369 ~~p~~ava~GAa~~a~~~ 386 (650)
.+|..+.|.|..+++...
T Consensus 364 ~~p~fs~avGl~~~~~~~ 381 (418)
T COG0849 364 RNPAFSTAVGLLLYGALM 381 (418)
T ss_pred cCchhhhhHHHHHHHhhc
Confidence 368899999999998754
No 33
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=99.71 E-value=4.5e-17 Score=146.76 Aligned_cols=197 Identities=23% Similarity=0.328 Sum_probs=158.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeecchhHHHHHhcccccccCCCCCceEEEE
Q 043296 125 SMVLTKMKEIAEAYLGHAVKNAVVTVPAYFNDSQRQATKDAGAIAGLNVMRIINEPTAAAIAYGLDKKASRTGEKNVLIF 204 (650)
Q Consensus 125 ~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~vlV~ 204 (650)
-.+.+.+++.+++.+|..+.+..-++|..-.+...+...+..+.||+.++..++||+|||.-..++. -.|+
T Consensus 75 veiVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l~d---------g~VV 145 (277)
T COG4820 75 VEIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLDD---------GGVV 145 (277)
T ss_pred HHHHHHHHHHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhccCC---------CcEE
Confidence 3567889999999999999999999999987777888888999999999999999999986554433 2799
Q ss_pred EeCCcceEEEEEEEeCCEEEEEEeeCCCCCChhHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHccCCC
Q 043296 205 DLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVAEFRRKHKKDISGNARALRRLRTACERAKRTLSSTT 284 (650)
Q Consensus 205 D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~ 284 (650)
|+|||||-+++++-.+ .-+..|.+-||.++...|+-. ++++ +.+||..|+.--..
T Consensus 146 DiGGGTTGIsi~kkGk-----Viy~ADEpTGGtHmtLvlAG~--------ygi~-----------~EeAE~~Kr~~k~~- 200 (277)
T COG4820 146 DIGGGTTGISIVKKGK-----VIYSADEPTGGTHMTLVLAGN--------YGIS-----------LEEAEQYKRGHKKG- 200 (277)
T ss_pred EeCCCcceeEEEEcCc-----EEEeccCCCCceeEEEEEecc--------cCcC-----------HhHHHHhhhccccc-
Confidence 9999999999998555 333456889999988776543 3444 45788888752211
Q ss_pred ceEEEEcccccCeeEEEEEcHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCeEEEEcCccCcHHHHHHHHhhhCCcc
Q 043296 285 QTTIEIDSLYEGIDFYATITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSLVHDIVLVGGSTRIPKVQQLLQDFFNGKE 364 (650)
Q Consensus 285 ~~~~~i~~~~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~ 364 (650)
+|.-..+.|+++++.+.+.+.++..+ +..++|+||+|.-|.+.+.+++.| +.+
T Consensus 201 ---------------------~Eif~~v~PV~eKMAeIv~~hie~~~-----i~dl~lvGGac~~~g~e~~Fe~~l-~l~ 253 (277)
T COG4820 201 ---------------------EEIFPVVKPVYEKMAEIVARHIEGQG-----ITDLWLVGGACMQPGVEELFEKQL-ALQ 253 (277)
T ss_pred ---------------------hhcccchhHHHHHHHHHHHHHhccCC-----CcceEEecccccCccHHHHHHHHh-ccc
Confidence 11123467999999999999998766 566999999999999999999999 789
Q ss_pred ccccCCcchhHHhHHHHH
Q 043296 365 LCKSINPDEAVAYGAAVQ 382 (650)
Q Consensus 365 i~~~~~p~~ava~GAa~~ 382 (650)
+..+..|....-+|-|+-
T Consensus 254 v~~P~~p~y~TPLgIA~s 271 (277)
T COG4820 254 VHLPQHPLYMTPLGIASS 271 (277)
T ss_pred cccCCCcceechhhhhhc
Confidence 999988888887777653
No 34
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=99.68 E-value=8.3e-16 Score=163.44 Aligned_cols=239 Identities=19% Similarity=0.174 Sum_probs=156.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHH-HHHHcCCceeeecchhHHHHHhcccccccCCCCCce
Q 043296 122 EISSMVLTKMKEIAEAYLGHAVKNAVVTVPAYFNDSQRQATKD-AGAIAGLNVMRIINEPTAAAIAYGLDKKASRTGEKN 200 (650)
Q Consensus 122 ~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~-Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~ 200 (650)
+.+..+++++...... ....-..+++++|..++..+|+.+.+ +.+..|++.+.++++|.+|+++++. .+
T Consensus 75 ~~~e~~~~~~~~~~l~-~~~~~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~---------~~ 144 (371)
T cd00012 75 DDMEKIWDHLFFNELK-VNPEEHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLYASGR---------TT 144 (371)
T ss_pred HHHHHHHHHHHHHhcC-CCCCCCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHHhcCC---------Ce
Confidence 4455666666543211 12234678999999999888888877 4677999999999999999998753 46
Q ss_pred EEEEEeCCcceEEEEEEEeCCEEEEEEeeCCCCCChhHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHc
Q 043296 201 VLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVAEFRRKHKKDISGNARALRRLRTACERAKRTL 280 (650)
Q Consensus 201 vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~l 280 (650)
.+|+|+|+++|+++.+. ++..- .......++||.++|+.|.+++..+.. ..... .-...++.+|+.+
T Consensus 145 ~lVVDiG~~~t~i~pv~--~G~~~-~~~~~~~~~GG~~l~~~l~~~l~~~~~---~~~~~-------~~~~~~~~iKe~~ 211 (371)
T cd00012 145 GLVVDSGDGVTHVVPVY--DGYVL-PHAIKRLDLAGRDLTRYLKELLRERGY---ELNSS-------DEREIVRDIKEKL 211 (371)
T ss_pred EEEEECCCCeeEEEEEE--CCEEc-hhhheeccccHHHHHHHHHHHHHhcCC---Cccch-------hHHHHHHHHHHhh
Confidence 79999999999998876 33321 122234689999999999998754321 11111 1133466777665
Q ss_pred cCCCce---E-----E-----EE-cccccCeeEEEEEcHHHH---HHHHHHH-----HhHHHHHHHHHHHhcCCC--CCC
Q 043296 281 SSTTQT---T-----I-----EI-DSLYEGIDFYATITRARF---EELNMDL-----FRKCMEPVEKCLRDSKID--KSL 336 (650)
Q Consensus 281 s~~~~~---~-----~-----~i-~~~~~~~~~~~~itr~~f---e~~~~~~-----~~~i~~~i~~~l~~~~~~--~~~ 336 (650)
..-... . . .. -.+.++. .+.++.+.| |.++.|. ...+.+.|.++++....+ ...
T Consensus 212 ~~v~~~~~~~~~~~~~~~~~~~~~~~lpd~~--~i~~~~er~~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l 289 (371)
T cd00012 212 CYVALDIEEEQDKSAKETSLLEKTYELPDGR--TIKVGNERFRAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDL 289 (371)
T ss_pred eeecCCHHHHHHhhhccCCccceeEECCCCe--EEEEChHHhhChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHH
Confidence 432110 0 0 00 0011222 345665544 2334332 237788888888875432 335
Q ss_pred CCeEEEEcCccCcHHHHHHHHhhhCC---------ccccccCCcchhHHhHHHHHHHH
Q 043296 337 VHDIVLVGGSTRIPKVQQLLQDFFNG---------KELCKSINPDEAVAYGAAVQAAI 385 (650)
Q Consensus 337 i~~V~LvGG~sr~p~v~~~l~~~f~~---------~~i~~~~~p~~ava~GAa~~a~~ 385 (650)
++.|+|+||+|++|.+.++|.+.+.. ..+....+|..++-+||+++|..
T Consensus 290 ~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~~~~~~~aw~G~si~as~ 347 (371)
T cd00012 290 YSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAPPERKYSVWLGGSILASL 347 (371)
T ss_pred HhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEccCCCccccEEeCchhhcCc
Confidence 78899999999999999999987731 12345568889999999998864
No 35
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=99.61 E-value=1.3e-14 Score=154.36 Aligned_cols=297 Identities=21% Similarity=0.207 Sum_probs=183.0
Q ss_pred cEEEEEcCcceeEEEEEECCeeEEEecCCCCcccceEEEEcCC---------cEEecHHHHHhHhhCcCchhhhhhHhcC
Q 043296 8 KAIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDT---------ERLIGDAAKNQVAMNPQNTVFDAKRLIG 78 (650)
Q Consensus 8 ~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~---------~~~~G~~A~~~~~~~~~~~~~~~k~~lg 78 (650)
..|.||+||.++++++..+..+. ..+||+|+...+ ..++|.+|.... ...
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~--------~~~ps~v~~~~~~~~~~~~~~~~~~G~~a~~~~----~~~--------- 60 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQ--------VVFPSIVGRPKDGKGMVGDAKDTFVGDEAQEKR----GGL--------- 60 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCc--------EEccceeeEecccccccCCCcceEecchhhhcC----CCc---------
Confidence 47999999999999988554332 246888877432 245676663211 000
Q ss_pred CCCCChhhhhhcccCCeEEEeCCCCCceEEEEECCcceEecHHHHHHHHHHHHHHHHHHHhcC--CCCcEEEEeCCCCCH
Q 043296 79 RRFSDPSVQSDMRHWPFKVASGPGDKPMIAVTYKGEEKRFSPEEISSMVLTKMKEIAEAYLGH--AVKNAVVTVPAYFND 156 (650)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~--~~~~~VitVPa~~~~ 156 (650)
.-.+|+. ...+.--+.+..+++++... .++. .-..+++|.|...+.
T Consensus 61 -----------~~~~P~~------------------~G~i~d~~~~e~i~~~~~~~---~l~~~~~~~~vll~~p~~~~~ 108 (373)
T smart00268 61 -----------ELKYPIE------------------HGIVENWDDMEKIWDYTFFN---ELRVEPEEHPVLLTEPPMNPK 108 (373)
T ss_pred -----------eecCCCc------------------CCEEeCHHHHHHHHHHHHhh---hcCCCCccCeeEEecCCCCCH
Confidence 0112211 11223345566677776653 2332 235689999999999
Q ss_pred HHHHHHHHHH-HHcCCceeeecchhHHHHHhcccccccCCCCCceEEEEEeCCcceEEEEEEEeCCEEEEEEeeCCCCCC
Q 043296 157 SQRQATKDAG-AIAGLNVMRIINEPTAAAIAYGLDKKASRTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLG 235 (650)
Q Consensus 157 ~qr~~l~~Aa-~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lG 235 (650)
.+|+.+.+.+ +..|++.+.++.+|.+|+++++ ..+.+|+|+|+++|+++.+. ++..- ........+|
T Consensus 109 ~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g---------~~~~lVVDiG~~~t~v~pv~--~G~~~-~~~~~~~~~G 176 (373)
T smart00268 109 SNREKILEIMFETFNFPALYIAIQAVLSLYASG---------RTTGLVIDSGDGVTHVVPVV--DGYVL-PHAIKRIDIA 176 (373)
T ss_pred HHHHHHHHHhhccCCCCeEEEeccHHHHHHhCC---------CCEEEEEecCCCcceEEEEE--CCEEc-hhhheeccCc
Confidence 9999998876 5679999999999999999875 34679999999999999887 33221 2222336899
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHccCCC-------------------ceEEEEcccccC
Q 043296 236 GEDFDNRLVNHFVAEFRRKHKKDISGNARALRRLRTACERAKRTLSSTT-------------------QTTIEIDSLYEG 296 (650)
Q Consensus 236 G~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~-------------------~~~~~i~~~~~~ 296 (650)
|.++|+.|.+++...- ...... .-...++.+|+.+..-. ...+. +.++
T Consensus 177 G~~l~~~l~~~l~~~~---~~~~~~-------~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~---lpdg 243 (373)
T smart00268 177 GRDLTDYLKELLSERG---YQFNSS-------AEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTYE---LPDG 243 (373)
T ss_pred HHHHHHHHHHHHHhcC---CCCCcH-------HHHHHHHHhhhheeeecCChHHHHHHhhhcccccccceeEE---CCCC
Confidence 9999999998875510 011110 11234555565543211 00111 1233
Q ss_pred eeEEEEEcHHHH---HHHHHHH-----HhHHHHHHHHHHHhcCCC--CCCCCeEEEEcCccCcHHHHHHHHhhhCC----
Q 043296 297 IDFYATITRARF---EELNMDL-----FRKCMEPVEKCLRDSKID--KSLVHDIVLVGGSTRIPKVQQLLQDFFNG---- 362 (650)
Q Consensus 297 ~~~~~~itr~~f---e~~~~~~-----~~~i~~~i~~~l~~~~~~--~~~i~~V~LvGG~sr~p~v~~~l~~~f~~---- 362 (650)
.. +.+..+.| |.++.|. ...+.+.|.++|..+..+ ..-.+.|+|+||+|++|.+.++|.+.+..
T Consensus 244 ~~--~~~~~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~ 321 (373)
T smart00268 244 NT--IKVGNERFRIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPK 321 (373)
T ss_pred CE--EEEChHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCC
Confidence 33 23333333 2333331 236777888888765322 22356799999999999999999887621
Q ss_pred ---ccccccCCcchhHHhHHHHHHH
Q 043296 363 ---KELCKSINPDEAVAYGAAVQAA 384 (650)
Q Consensus 363 ---~~i~~~~~p~~ava~GAa~~a~ 384 (650)
..+..+.++..++=.||+++|.
T Consensus 322 ~~~v~v~~~~~~~~~~W~G~silas 346 (373)
T smart00268 322 KLKVKVIAPPERKYSVWLGGSILAS 346 (373)
T ss_pred CceeEEecCCCCccceEeCcccccC
Confidence 1233444566777778877764
No 36
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=99.57 E-value=7.9e-13 Score=137.79 Aligned_cols=212 Identities=14% Similarity=0.192 Sum_probs=139.2
Q ss_pred CCCcE--EEEeCCCCCHHH-HHHHHHHHHHc------------CCceeeecchhHHHHHhcccccccC----CCCCceEE
Q 043296 142 AVKNA--VVTVPAYFNDSQ-RQATKDAGAIA------------GLNVMRIINEPTAAAIAYGLDKKAS----RTGEKNVL 202 (650)
Q Consensus 142 ~~~~~--VitVPa~~~~~q-r~~l~~Aa~~A------------Gl~~~~li~Ep~Aaal~y~~~~~~~----~~~~~~vl 202 (650)
.+.++ +...|..+-..+ ++.+++..... -+..+.++.||.+|.+.+..+.... ..+...++
T Consensus 109 ~~~~v~l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~il 188 (344)
T PRK13917 109 EVVEVVVATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVS 188 (344)
T ss_pred CcceeEEEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEE
Confidence 34444 458898875444 36666654221 1234678999999988776653321 12345789
Q ss_pred EEEeCCcceEEEEEEEeCCEEEEEEeeCCCCCChhHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHccC
Q 043296 203 IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVAEFRRKHKKDISGNARALRRLRTACERAKRTLSS 282 (650)
Q Consensus 203 V~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~ 282 (650)
|+|+|+||||++++. +..+. ....+....|..++.+.|.+.+..+ .++..+. .. + ++++ |..
T Consensus 189 vIDIG~~TtD~~v~~--~~~~~-~~~s~s~~~G~~~~~~~I~~~i~~~---~~~~~~~--~~---~----ie~~---l~~ 250 (344)
T PRK13917 189 VIDFGSGTTDLDTIQ--NLKRV-EEESFVIPKGTIDVYKRIASHISKK---EEGASIT--PY---M----LEKG---LEY 250 (344)
T ss_pred EEEcCCCcEEEEEEe--CcEEc-ccccccccchHHHHHHHHHHHHHhh---CCCCCCC--HH---H----HHHH---HHc
Confidence 999999999999986 33332 2333446789999999998887433 2233322 11 1 1221 111
Q ss_pred CCceEEEEcccccCeeEEEEEcHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCeEEEEcCccCcHHHHHHHHhhhCC
Q 043296 283 TTQTTIEIDSLYEGIDFYATITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSLVHDIVLVGGSTRIPKVQQLLQDFFNG 362 (650)
Q Consensus 283 ~~~~~~~i~~~~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~ 362 (650)
. .+.+. .+.. +.+ ++++.++++++++++...|+..+.. ..+++.|+|+||++++ +++.|++.|+.
T Consensus 251 g---~i~~~---~~~~--id~-~~~~~~~~~~~~~~i~~~i~~~~~~----~~~~d~IiL~GGGA~l--l~~~lk~~f~~ 315 (344)
T PRK13917 251 G---ACKLN---QKTV--IDF-KDEFYKEQDSVIDEVMSGFEIAVGN----INSFDRVIVTGGGANI--FFDSLSHWYSD 315 (344)
T ss_pred C---cEEeC---CCce--Eeh-HHHHHHHHHHHHHHHHHHHHHHhcc----cCCCCEEEEECCcHHH--HHHHHHHHcCC
Confidence 1 11111 1111 122 4667788999999999988888854 3478999999999987 88999999964
Q ss_pred ccccccCCcchhHHhHHHHHHHHHcC
Q 043296 363 KELCKSINPDEAVAYGAAVQAAILSG 388 (650)
Q Consensus 363 ~~i~~~~~p~~ava~GAa~~a~~~~~ 388 (650)
+....||..|.|+|...+|..+.+
T Consensus 316 --~~~~~~p~~ANa~G~~~~g~~~~~ 339 (344)
T PRK13917 316 --VEKADESQFANVRGYYKYGELLKN 339 (344)
T ss_pred --eEEcCChHHHHHHHHHHHHHHHhc
Confidence 356679999999999999987653
No 37
>PTZ00280 Actin-related protein 3; Provisional
Probab=99.53 E-value=1.2e-12 Score=140.90 Aligned_cols=226 Identities=17% Similarity=0.133 Sum_probs=140.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHHH-HHcCCceeeecchhHHHHHhcccccccC-CCCC
Q 043296 121 EEISSMVLTKMKEIAEAYLGHAVKNAVVTVPAYFNDSQRQATKDAG-AIAGLNVMRIINEPTAAAIAYGLDKKAS-RTGE 198 (650)
Q Consensus 121 ~~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa-~~AGl~~~~li~Ep~Aaal~y~~~~~~~-~~~~ 198 (650)
-+....+++|+..... .....-..+++|.|..++..+|+.+.+.+ +..+++.+.+..+|.++++++....... ....
T Consensus 81 wd~~e~l~~~~~~~~L-~~~p~~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~ 159 (414)
T PTZ00280 81 WDLMEKFWEQCIFKYL-RCEPEEHYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGT 159 (414)
T ss_pred HHHHHHHHHHHHHHhh-ccCCCCCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCc
Confidence 3455566666543211 11222345799999999999999997766 4458888999999999998763322110 0023
Q ss_pred ceEEEEEeCCcceEEEEEEEeCCEEEEEEeeCCCCCChhHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHH
Q 043296 199 KNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVAEFRRKHKKDISGNARALRRLRTACERAKR 278 (650)
Q Consensus 199 ~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~ 278 (650)
.+-||||+|.++|+++.+. +|..-.-+ .....+||.++++.|.++|.++ +..+... .....++.+|+
T Consensus 160 ~tglVVDiG~~~T~i~PV~--~G~~l~~~-~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~~-----~~~~~~~~iKe 226 (414)
T PTZ00280 160 LTGTVIDSGDGVTHVIPVV--DGYVIGSS-IKHIPLAGRDITNFIQQMLRER-----GEPIPAE-----DILLLAQRIKE 226 (414)
T ss_pred eeEEEEECCCCceEEEEEE--CCEEcccc-eEEecCcHHHHHHHHHHHHHHc-----CCCCCcH-----HHHHHHHHHHH
Confidence 3569999999999998775 33321112 1235899999999999987542 1111111 11234666777
Q ss_pred HccCCCc-----------------eEEEEcccccCeeEEEEEcHHHHH---HHHHHHH------hHHHHHHHHHHHhcCC
Q 043296 279 TLSSTTQ-----------------TTIEIDSLYEGIDFYATITRARFE---ELNMDLF------RKCMEPVEKCLRDSKI 332 (650)
Q Consensus 279 ~ls~~~~-----------------~~~~i~~~~~~~~~~~~itr~~fe---~~~~~~~------~~i~~~i~~~l~~~~~ 332 (650)
.++.... ..+..+....+....+.|..+.|. -++.|-+ ..+.+.|.++|..+..
T Consensus 227 ~~c~v~~d~~~e~~~~~~~~~~~~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~ 306 (414)
T PTZ00280 227 KYCYVAPDIAKEFEKYDSDPKNHFKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPI 306 (414)
T ss_pred hcCcccCcHHHHHHHhhcCcccccceEECCCCCCCCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCCh
Confidence 6543110 112222222233446778877773 4454532 1456777777776543
Q ss_pred C--CCCCCeEEEEcCccCcHHHHHHHHhhh
Q 043296 333 D--KSLVHDIVLVGGSTRIPKVQQLLQDFF 360 (650)
Q Consensus 333 ~--~~~i~~V~LvGG~sr~p~v~~~l~~~f 360 (650)
+ ..-.+.|+|+||+|.+|.+.++|.+.+
T Consensus 307 d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El 336 (414)
T PTZ00280 307 DCRRPLYKNIVLSGGSTMFKGFDKRLQRDV 336 (414)
T ss_pred hhHHHHhhcEEEeCCcccCcCHHHHHHHHH
Confidence 2 235678999999999999999999877
No 38
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=99.42 E-value=1.5e-11 Score=127.51 Aligned_cols=209 Identities=18% Similarity=0.199 Sum_probs=130.9
Q ss_pred CCCcEEEEeCCCCCHHHHHHHHHHHHHc---------CCceeeecchhHHHHHhcccccccCCCCCceEEEEEeCCcceE
Q 043296 142 AVKNAVVTVPAYFNDSQRQATKDAGAIA---------GLNVMRIINEPTAAAIAYGLDKKASRTGEKNVLIFDLGGGTFD 212 (650)
Q Consensus 142 ~~~~~VitVPa~~~~~qr~~l~~Aa~~A---------Gl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~vlV~D~GggT~d 212 (650)
.+..+|+..|..+-..+++.+++..... -+..+.+++||.+|.+.+..+..........++|+|+|++|+|
T Consensus 101 ~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~~~~~~~lVIDIG~~TtD 180 (320)
T TIGR03739 101 EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLLTGKEQSLIIDPGYFTFD 180 (320)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCcccCcCcEEEEecCCCeee
Confidence 4567999999999888999998876532 2355788999999988876643222235667899999999999
Q ss_pred EEEEEEeCCEEEEEEeeCCCCCChhHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHccCCCceEEEEcc
Q 043296 213 VSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVAEFRRKHKKDISGNARALRRLRTACERAKRTLSSTTQTTIEIDS 292 (650)
Q Consensus 213 vsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~i~~ 292 (650)
+.++. +..+ +....+....|-.++-+.|.+.+.+++ +.....+...+.. ..+.-|. +.+
T Consensus 181 ~~~~~--~~~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~----g~~~~~~~~~i~~---~l~~g~~---------~~~-- 239 (320)
T TIGR03739 181 WLVAR--GMRL-VQKRSGSVNGGMSDIYRLLAAEISKDI----GTPAYRDIDRIDL---ALRTGKQ---------PRI-- 239 (320)
T ss_pred eehcc--CCEE-cccccCCchhHHHHHHHHHHHHHHhhc----CCCCccCHHHHHH---HHHhCCc---------eee--
Confidence 98774 4444 334444567888888877777765544 3331111111111 1111110 000
Q ss_pred cccCeeEEEEEcHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCeEEEEcCccCcHHHHHHHHhhhCCccccccCCcc
Q 043296 293 LYEGIDFYATITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSLVHDIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPD 372 (650)
Q Consensus 293 ~~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~p~ 372 (650)
.+.. +.|+ +.-+..+..+++++..|.+.+. ...+++.|+|+||++. .+++.|++.|+...+....||.
T Consensus 240 --~gk~--~di~--~~~~~~~~~~~~~v~~i~~~~~----~~~~~~~Iil~GGGa~--ll~~~l~~~f~~~~i~~~~dp~ 307 (320)
T TIGR03739 240 --YQKP--VDIK--RCLELAETVAQQAVSTMMTWIG----APESIQNIVLVGGGAF--LFKKAVKAAFPKHRIVEVDEPM 307 (320)
T ss_pred --ccee--cCch--HHHHHHHHHHHHHHHHHHHhcc----cCCcccEEEEeCCcHH--HHHHHHHHHCCCCeeEecCCcH
Confidence 1111 1222 2222333444444444444442 1245889999999986 6789999999766666678999
Q ss_pred hhHHhHHHHHH
Q 043296 373 EAVAYGAAVQA 383 (650)
Q Consensus 373 ~ava~GAa~~a 383 (650)
.|.|+|-..++
T Consensus 308 ~ANarG~~~~g 318 (320)
T TIGR03739 308 FANVRGFQIAG 318 (320)
T ss_pred HHHHHHHHHhh
Confidence 99999987765
No 39
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=99.41 E-value=2e-11 Score=131.11 Aligned_cols=311 Identities=20% Similarity=0.232 Sum_probs=180.4
Q ss_pred CCcEEEEEcCcceeEEEEEECCeeEEEecCCCCcccceEEEEcCC-----cEEecHHHHHhHhhCcCchhhhhhHhcCCC
Q 043296 6 EGKAIGIDLGTTYSCVGVWQNDRVEIIANDQGNRTTPSYVAFTDT-----ERLIGDAAKNQVAMNPQNTVFDAKRLIGRR 80 (650)
Q Consensus 6 ~~~vvGID~GTt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~-----~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~ 80 (650)
...+|-||+|+.++++++..+..+. ..+||++..... ..++|..+... .+..
T Consensus 3 ~~~~vViD~Gs~~~k~G~age~~P~--------~v~ps~~~~~~~~~~~~~~~~g~~~~~~---~~~~------------ 59 (393)
T PF00022_consen 3 ENKPVVIDNGSSTIKAGFAGEDLPR--------VVIPSVVGRPRDKNSSNDYYVGDEALSP---RSNL------------ 59 (393)
T ss_dssp SSSEEEEEECSSEEEEEETTSSS-S--------EEEESEEEEESSSSSSSSCEETHHHHHT---GTGE------------
T ss_pred CCCEEEEECCCceEEEEECCCCCCC--------CcCCCccccccccccceeEEeecccccc---hhhe------------
Confidence 4568999999999999997444332 246777776432 35677663321 0000
Q ss_pred CCChhhhhhcccCCeEEEeCCCCCceEEEEECCcceEecHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHH
Q 043296 81 FSDPSVQSDMRHWPFKVASGPGDKPMIAVTYKGEEKRFSPEEISSMVLTKMKEIAEAYLGHAVKNAVVTVPAYFNDSQRQ 160 (650)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~ 160 (650)
.-..|+ ....+.--+.+..+++++.... -.....-..++++.|..++...|+
T Consensus 60 ---------~~~~p~------------------~~g~i~~~~~~e~i~~~~~~~~-l~~~~~~~~vll~~~~~~~~~~r~ 111 (393)
T PF00022_consen 60 ---------ELRSPI------------------ENGVIVDWDALEEIWDYIFSNL-LKVDPSDHPVLLTEPPFNPRSQRE 111 (393)
T ss_dssp ---------EEEESE------------------ETTEESSHHHHHHHHHHHHHTT-T-SSGGGSEEEEEESTT--HHHHH
T ss_pred ---------eeeeec------------------cccccccccccccccccccccc-cccccccceeeeeccccCCchhhh
Confidence 000111 0112233344555666665432 112234456899999999999998
Q ss_pred HHHHHH-HHcCCceeeecchhHHHHHhcccccccCCCCCceEEEEEeCCcceEEEEEEEeCCEEEEEEeeCCCCCChhHH
Q 043296 161 ATKDAG-AIAGLNVMRIINEPTAAAIAYGLDKKASRTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDF 239 (650)
Q Consensus 161 ~l~~Aa-~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~ 239 (650)
.+.+.+ +..+++.+.++.+|.+|+++++.. +-||||+|.+.|.|+.+. ++.. +........+||.++
T Consensus 112 ~l~e~lfE~~~~~~v~~~~~~~~a~~~~g~~---------tglVVD~G~~~t~v~pV~--dG~~-~~~~~~~~~~GG~~l 179 (393)
T PF00022_consen 112 KLAEILFEKFGVPSVYFIPSPLLALYASGRT---------TGLVVDIGYSSTSVVPVV--DGYV-LPHSIKRSPIGGDDL 179 (393)
T ss_dssp HHHHHHHHTS--SEEEEEEHHHHHHHHTTBS---------SEEEEEESSS-EEEEEEE--TTEE--GGGBEEES-SHHHH
T ss_pred hhhhhhhcccccceeeeeecccccccccccc---------cccccccceeeeeeeeee--eccc-cccccccccccHHHH
Confidence 887654 577999999999999999887643 459999999999998774 4432 111122357999999
Q ss_pred HHHHHHHHHHHHHh---hcCCCCC----ccHHHHHHHHHHHHHHHHHcc---------------CCCceEEEEcccccCe
Q 043296 240 DNRLVNHFVAEFRR---KHKKDIS----GNARALRRLRTACERAKRTLS---------------STTQTTIEIDSLYEGI 297 (650)
Q Consensus 240 d~~l~~~l~~~~~~---~~~~~~~----~~~~~~~~L~~~~e~~K~~ls---------------~~~~~~~~i~~~~~~~ 297 (650)
++.|.+.|.++-.. .+..... ........-...++.+|+.+. ......+.++ ++.
T Consensus 180 t~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~lP---dg~ 256 (393)
T PF00022_consen 180 TEYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEEQASENPEKSYELP---DGQ 256 (393)
T ss_dssp HHHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHHHHCSTTTEEEE-T---TSS
T ss_pred HHHHHHHHHhhccccccccccccccccccccccchhhhccchhccchhhhcccccccccccccccccceecccc---ccc
Confidence 99999888773110 0000000 000000111223334444321 1222333332 333
Q ss_pred eEEEEEcHHHHHHHHHHHHh----------------HHHHHHHHHHHhcCCCC--CCCCeEEEEcCccCcHHHHHHHHhh
Q 043296 298 DFYATITRARFEELNMDLFR----------------KCMEPVEKCLRDSKIDK--SLVHDIVLVGGSTRIPKVQQLLQDF 359 (650)
Q Consensus 298 ~~~~~itr~~fe~~~~~~~~----------------~i~~~i~~~l~~~~~~~--~~i~~V~LvGG~sr~p~v~~~l~~~ 359 (650)
.+.+..+.| .+.+.+++ .+.+.|.+++.....+. .-.+.|+|+||+|++|.+.++|.+.
T Consensus 257 --~i~~~~er~-~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~e 333 (393)
T PF00022_consen 257 --TIILGKERF-RIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNIVLTGGSSLIPGFKERLQQE 333 (393)
T ss_dssp --EEEESTHHH-HHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEESGGGGSTTHHHHHHHH
T ss_pred --ccccccccc-cccccccccccccccccccccccchhhhhhhhhhhccccccccccccceEEecccccccchHHHHHHH
Confidence 456665555 33343332 57788888887765332 1357899999999999999999877
Q ss_pred hCC-------ccccccC-CcchhHHhHHHHHHHH
Q 043296 360 FNG-------KELCKSI-NPDEAVAYGAAVQAAI 385 (650)
Q Consensus 360 f~~-------~~i~~~~-~p~~ava~GAa~~a~~ 385 (650)
+.. .++.... +|..++=.||+++|..
T Consensus 334 L~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilasl 367 (393)
T PF00022_consen 334 LRSLLPSSTKVKVIAPPSDRQFAAWIGGSILASL 367 (393)
T ss_dssp HHHHSGTTSTEEEE--T-TTTSHHHHHHHHHHTS
T ss_pred hhhhhhccccceeccCchhhhhcccccceeeecc
Confidence 621 2344555 7899999999999863
No 40
>PTZ00452 actin; Provisional
Probab=99.40 E-value=2.6e-11 Score=128.28 Aligned_cols=235 Identities=17% Similarity=0.168 Sum_probs=145.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHHH-HHcCCceeeecchhHHHHHhcccccccCCCCCce
Q 043296 122 EISSMVLTKMKEIAEAYLGHAVKNAVVTVPAYFNDSQRQATKDAG-AIAGLNVMRIINEPTAAAIAYGLDKKASRTGEKN 200 (650)
Q Consensus 122 ~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa-~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~ 200 (650)
+.+..+++|+....- .....-..+++|-|...+..+|+.+.+.+ +..+++.+.+.+.|.+++++++. .+
T Consensus 80 d~~e~iw~~~f~~~l-~v~p~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~---------~t 149 (375)
T PTZ00452 80 DDIEIIWHHAFYNEL-CMSPEDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGK---------TI 149 (375)
T ss_pred HHHHHHHHHHHHhhc-CCCcccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCCC---------ce
Confidence 344456666543211 12223456799999999999999987755 55688888999999999887642 34
Q ss_pred EEEEEeCCcceEEEEEEEeCCEEEEEEeeCCCCCChhHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHc
Q 043296 201 VLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVAEFRRKHKKDISGNARALRRLRTACERAKRTL 280 (650)
Q Consensus 201 vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~l 280 (650)
-+|||+|.+.+.++-+. +|..-.-+. ....+||.++++.|.+.|.++ +....... . ...++.+|+.+
T Consensus 150 glVVDiG~~~t~v~PV~--dG~~l~~~~-~r~~~gG~~lt~~L~~lL~~~-----~~~~~~~~-~----~~~~~~iKe~~ 216 (375)
T PTZ00452 150 GLVVDSGEGVTHCVPVF--EGHQIPQAI-TKINLAGRLCTDYLTQILQEL-----GYSLTEPH-Q----RIIVKNIKERL 216 (375)
T ss_pred eeeecCCCCcceEEEEE--CCEEeccce-EEeeccchHHHHHHHHHHHhc-----CCCCCCHH-H----HHHHHHHHHHh
Confidence 59999999999998765 333222222 235799999999998876431 11111110 0 12245555554
Q ss_pred cCCC----------------ceEEEEcccccCeeEEEEEcHHHH---HHHHHHHH-----hHHHHHHHHHHHhcCCC--C
Q 043296 281 SSTT----------------QTTIEIDSLYEGIDFYATITRARF---EELNMDLF-----RKCMEPVEKCLRDSKID--K 334 (650)
Q Consensus 281 s~~~----------------~~~~~i~~~~~~~~~~~~itr~~f---e~~~~~~~-----~~i~~~i~~~l~~~~~~--~ 334 (650)
+... ...+. +.+|. .+.+..+.| |-+++|.+ ..+.+.|.+++..+..+ .
T Consensus 217 c~v~~d~~~e~~~~~~~~~~~~~y~---LPDg~--~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~ 291 (375)
T PTZ00452 217 CYTALDPQDEKRIYKESNSQDSPYK---LPDGN--ILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQ 291 (375)
T ss_pred ccccCcHHHHHHHhhccCCcCceEE---CCCCC--EEEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHH
Confidence 4211 01122 22333 345666666 33444432 24567777777765432 3
Q ss_pred CCCCeEEEEcCccCcHHHHHHHHhhhCC-------ccccccCCcchhHHhHHHHHHH
Q 043296 335 SLVHDIVLVGGSTRIPKVQQLLQDFFNG-------KELCKSINPDEAVAYGAAVQAA 384 (650)
Q Consensus 335 ~~i~~V~LvGG~sr~p~v~~~l~~~f~~-------~~i~~~~~p~~ava~GAa~~a~ 384 (650)
.-.+.|+|+||+|.+|.+.++|.+.+.. .++..+.++..++=+|++++|.
T Consensus 292 ~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~GgSilas 348 (375)
T PTZ00452 292 ELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQLKIQVAAPPDRRFSAWIGGSIQCT 348 (375)
T ss_pred HhhccEEEecccccccCHHHHHHHHHHHhCCCCceeEEecCCCcceeEEECchhhcC
Confidence 3567899999999999999999877621 1233444555677778888775
No 41
>PTZ00004 actin-2; Provisional
Probab=99.36 E-value=6.5e-11 Score=125.71 Aligned_cols=233 Identities=16% Similarity=0.166 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHHHHHHHhc--CCCCcEEEEeCCCCCHHHHHHHHHHH-HHcCCceeeecchhHHHHHhcccccccCCCCC
Q 043296 122 EISSMVLTKMKEIAEAYLG--HAVKNAVVTVPAYFNDSQRQATKDAG-AIAGLNVMRIINEPTAAAIAYGLDKKASRTGE 198 (650)
Q Consensus 122 ~v~~~~L~~l~~~a~~~~~--~~~~~~VitVPa~~~~~qr~~l~~Aa-~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~ 198 (650)
+....+++|+.. ..++ ..-..+++|-|..++..+|+.+.+.+ +..+++.+.+..+|.+++++++.
T Consensus 81 d~~e~i~~~~~~---~~l~v~~~~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~--------- 148 (378)
T PTZ00004 81 DDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGR--------- 148 (378)
T ss_pred HHHHHHHHHHHH---hhcccCCccCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCC---------
Confidence 445556666432 2222 23356789999999999998876654 66799999999999999987642
Q ss_pred ceEEEEEeCCcceEEEEEEEeCCEEEEEEeeCCCCCChhHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHH
Q 043296 199 KNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVAEFRRKHKKDISGNARALRRLRTACERAKR 278 (650)
Q Consensus 199 ~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~ 278 (650)
.+-+|+|+|.+.|+++.+. +|..-. ......++||.++++.|.+.+..+ +..+.. .. -...++.+|+
T Consensus 149 ~tglVVDiG~~~t~v~pV~--dG~~l~-~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~--~~---~~~~~~~iKe 215 (378)
T PTZ00004 149 TTGIVLDSGDGVSHTVPIY--EGYSLP-HAIHRLDVAGRDLTEYMMKILHER-----GTTFTT--TA---EKEIVRDIKE 215 (378)
T ss_pred ceEEEEECCCCcEEEEEEE--CCEEee-cceeeecccHHHHHHHHHHHHHhc-----CCCCCc--HH---HHHHHHHHhh
Confidence 3559999999999998775 333222 222336799999999999987432 111111 11 1223455565
Q ss_pred HccCCC-----------------ceEEEEcccccCeeEEEEEcHHHH---HHHHHHH------HhHHHHHHHHHHHhcCC
Q 043296 279 TLSSTT-----------------QTTIEIDSLYEGIDFYATITRARF---EELNMDL------FRKCMEPVEKCLRDSKI 332 (650)
Q Consensus 279 ~ls~~~-----------------~~~~~i~~~~~~~~~~~~itr~~f---e~~~~~~------~~~i~~~i~~~l~~~~~ 332 (650)
.+.... ...+. +.+|.. +.+..+.| |-++.|- ...+.+.|.+++..+..
T Consensus 216 ~~c~v~~d~~~~~~~~~~~~~~~~~~y~---lPdg~~--i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~ 290 (378)
T PTZ00004 216 KLCYIALDFDEEMGNSAGSSDKYEESYE---LPDGTI--ITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDI 290 (378)
T ss_pred cceeecCCHHHHHhhhhcCccccceEEE---CCCCCE--EEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCCh
Confidence 543211 11122 223333 45565555 3455553 23556777777776543
Q ss_pred C--CCCCCeEEEEcCccCcHHHHHHHHhhhCC-------ccccccCCcchhHHhHHHHHHH
Q 043296 333 D--KSLVHDIVLVGGSTRIPKVQQLLQDFFNG-------KELCKSINPDEAVAYGAAVQAA 384 (650)
Q Consensus 333 ~--~~~i~~V~LvGG~sr~p~v~~~l~~~f~~-------~~i~~~~~p~~ava~GAa~~a~ 384 (650)
+ ..-...|+|+||+|.+|.+.++|...+.. .++..+.++..++=+||+++|.
T Consensus 291 d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p~~~~~~v~~~~~~~~~aW~Ggsilas 351 (378)
T PTZ00004 291 DIRKDLYGNIVLSGGTTMYRGLPERLTKELTTLAPSTMKIKVVAPPERKYSVWIGGSILSS 351 (378)
T ss_pred hHHHHHHhhEEeccchhcCcCHHHHHHHHHHHhCCCCccEEEecCCCCceeEEECcccccC
Confidence 2 22467899999999999999999877621 1234445666777778877764
No 42
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=99.36 E-value=1.9e-10 Score=121.30 Aligned_cols=161 Identities=16% Similarity=0.189 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHcCCceeeecchhHHHHHhcc-ccccc-CCCCCc-eEEEEEeCCcceEEEEEEEeCCEEEEEEeeCCC
Q 043296 156 DSQRQATKDAGAIAGLNVMRIINEPTAAAIAYG-LDKKA-SRTGEK-NVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDT 232 (650)
Q Consensus 156 ~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~-~~~~~-~~~~~~-~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~ 232 (650)
....+.+.++++.||+++..+..+|.|.+-.+. +.... ...... .++++|+|+++|++++++- +.+ ...+..
T Consensus 142 ~~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~--g~~---~~~r~i 216 (348)
T TIGR01175 142 KEVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHP--GRM---LFTREV 216 (348)
T ss_pred HHHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEEC--CeE---EEEEEe
Confidence 456788899999999999999999999876653 11000 001233 4999999999999999973 333 223446
Q ss_pred CCChhHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHccCCCceEEEEcccccCeeEEEEEcHHHHHHHH
Q 043296 233 HLGGEDFDNRLVNHFVAEFRRKHKKDISGNARALRRLRTACERAKRTLSSTTQTTIEIDSLYEGIDFYATITRARFEELN 312 (650)
Q Consensus 233 ~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~fe~~~ 312 (650)
.+||.+|++.+.+.+ +.+ ..+||+.|........ .-.+++
T Consensus 217 ~~G~~~i~~~i~~~~--------~~~-----------~~~Ae~~k~~~~~~~~---------------------~~~~~~ 256 (348)
T TIGR01175 217 PFGTRQLTSELSRAY--------GLN-----------PEEAGEAKQQGGLPLL---------------------YDPEVL 256 (348)
T ss_pred echHHHHHHHHHHHc--------CCC-----------HHHHHHHHhcCCCCCc---------------------hhHHHH
Confidence 899999999887543 222 4578888875332110 012456
Q ss_pred HHHHhHHHHHHHHHHHhc--CCCCCCCCeEEEEcCccCcHHHHHHHHhhhC
Q 043296 313 MDLFRKCMEPVEKCLRDS--KIDKSLVHDIVLVGGSTRIPKVQQLLQDFFN 361 (650)
Q Consensus 313 ~~~~~~i~~~i~~~l~~~--~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~ 361 (650)
++.++++...|.+.|+-. ......++.|+|+||+++++.+.+.+++.|+
T Consensus 257 ~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~ 307 (348)
T TIGR01175 257 RRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLG 307 (348)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHC
Confidence 677777777777777532 2223468999999999999999999999994
No 43
>PTZ00281 actin; Provisional
Probab=99.34 E-value=4.5e-11 Score=126.79 Aligned_cols=233 Identities=17% Similarity=0.195 Sum_probs=146.3
Q ss_pred HHHHHHHHHHHHHHHHHhc--CCCCcEEEEeCCCCCHHHHHHHHH-HHHHcCCceeeecchhHHHHHhcccccccCCCCC
Q 043296 122 EISSMVLTKMKEIAEAYLG--HAVKNAVVTVPAYFNDSQRQATKD-AGAIAGLNVMRIINEPTAAAIAYGLDKKASRTGE 198 (650)
Q Consensus 122 ~v~~~~L~~l~~~a~~~~~--~~~~~~VitVPa~~~~~qr~~l~~-Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~ 198 (650)
+....+++++... .+. ..-..+++|-|..++..+|+.+.+ ..+..++..+.+...|.+++++++.
T Consensus 81 d~~e~l~~~~f~~---~l~v~p~~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~--------- 148 (376)
T PTZ00281 81 DDMEKIWHHTFYN---ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR--------- 148 (376)
T ss_pred HHHHHHHHHHHHh---hccCCCccCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCC---------
Confidence 3444556665432 232 233567889999999999999877 4566788889999999999887642
Q ss_pred ceEEEEEeCCcceEEEEEEEeCCEEEEEEeeCCCCCChhHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHH
Q 043296 199 KNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVAEFRRKHKKDISGNARALRRLRTACERAKR 278 (650)
Q Consensus 199 ~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~ 278 (650)
.+-+|||+|.+.+.++-+.- |.. +.......++||.++++.|.+.|..+ +..... . .- ...++.+|+
T Consensus 149 ~tglVVDiG~~~t~v~PV~d--G~~-~~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~-~-~~---~~~~~~iKe 215 (376)
T PTZ00281 149 TTGIVMDSGDGVSHTVPIYE--GYA-LPHAILRLDLAGRDLTDYMMKILTER-----GYSFTT-T-AE---REIVRDIKE 215 (376)
T ss_pred ceEEEEECCCceEEEEEEEe--ccc-chhheeeccCcHHHHHHHHHHHHHhc-----CCCCCc-H-HH---HHHHHHHHH
Confidence 35699999999999876542 221 12222336899999999998877442 111111 0 01 223566676
Q ss_pred HccCCC----------------ceEEEEcccccCeeEEEEEcHHHH---HHHHHHHH-----hHHHHHHHHHHHhcCCC-
Q 043296 279 TLSSTT----------------QTTIEIDSLYEGIDFYATITRARF---EELNMDLF-----RKCMEPVEKCLRDSKID- 333 (650)
Q Consensus 279 ~ls~~~----------------~~~~~i~~~~~~~~~~~~itr~~f---e~~~~~~~-----~~i~~~i~~~l~~~~~~- 333 (650)
.++.-. ...+. +.++.. +.|..+.| |-+++|-+ ..+.+.|.+++..+..+
T Consensus 216 ~~c~v~~d~~~~~~~~~~~~~~~~~y~---LPdg~~--i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~ 290 (376)
T PTZ00281 216 KLAYVALDFEAEMQTAASSSALEKSYE---LPDGQV--ITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDI 290 (376)
T ss_pred hcEEecCCchHHHHhhhcCcccceeEE---CCCCCE--EEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhH
Confidence 654211 01111 223332 45555544 34454432 24566777777765332
Q ss_pred -CCCCCeEEEEcCccCcHHHHHHHHhhhCC-------ccccccCCcchhHHhHHHHHHH
Q 043296 334 -KSLVHDIVLVGGSTRIPKVQQLLQDFFNG-------KELCKSINPDEAVAYGAAVQAA 384 (650)
Q Consensus 334 -~~~i~~V~LvGG~sr~p~v~~~l~~~f~~-------~~i~~~~~p~~ava~GAa~~a~ 384 (650)
..-.+.|+|+||+|.+|.+.++|...+.. .++..+.++..++=+|++++|.
T Consensus 291 r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~Ggsilas 349 (376)
T PTZ00281 291 RKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILAS 349 (376)
T ss_pred HHHHHhhccccCccccCcCHHHHHHHHHHHhCCCCcceEEecCCCCceeEEECcccccC
Confidence 22456899999999999999999876621 1244445667788888888775
No 44
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=99.32 E-value=6.4e-11 Score=124.09 Aligned_cols=210 Identities=18% Similarity=0.215 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEeC---CC-------------CCHHHHHHHHHHHHHcCCceeeecchhHHHHHhccccc
Q 043296 128 LTKMKEIAEAYLGHAVKNAVVTVP---AY-------------FNDSQRQATKDAGAIAGLNVMRIINEPTAAAIAYGLDK 191 (650)
Q Consensus 128 L~~l~~~a~~~~~~~~~~~VitVP---a~-------------~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~ 191 (650)
-..+...+++++..++.++++-.= .. ......+...++++.|||++..+--+|.|.+-.+....
T Consensus 91 ~~~I~~Ea~~~iP~~~~e~~~D~~vl~~~~~~~~~~~Vll~Aa~k~~v~~~~~~~~~aGL~~~~vDv~~~Al~r~~~~~~ 170 (340)
T PF11104_consen 91 EEAIRWEAEQYIPFPLEEVVFDYQVLGESEDGEEKMEVLLVAAPKEIVESYVELFEEAGLKPVAVDVEAFALARLFEFLE 170 (340)
T ss_dssp HHHHHHHHGGG-SS----EEEEEEESS-GS-TTSEEEEEEEEEEHHHHHHHHHHHHHTT-EEEEEEEHHHHGGGGGHHHH
T ss_pred HHHHHHHHHhhCCCChhHeEEEEEEeccCCCCCCceEEEEEEEcHHHHHHHHHHHHHcCCceEEEeehHHHHHHHHHHHH
Confidence 344566777887766665533210 00 01234667788999999999878777777655554321
Q ss_pred c-cC-CCCCceEEEEEeCCcceEEEEEEEeCCEEEEEEeeCCCCCChhHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHH
Q 043296 192 K-AS-RTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVAEFRRKHKKDISGNARALRRL 269 (650)
Q Consensus 192 ~-~~-~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L 269 (650)
. .+ ......++++|+|+.++.++++. ++.+.. .+...+||.++++.|++.+. .+
T Consensus 171 ~~~~~~~~~~~~~lvdiG~~~t~~~i~~--~g~~~f---~R~i~~G~~~l~~~i~~~~~--------i~----------- 226 (340)
T PF11104_consen 171 PQLPDEEDAETVALVDIGASSTTVIIFQ--NGKPIF---SRSIPIGGNDLTEAIARELG--------ID----------- 226 (340)
T ss_dssp HTST----T-EEEEEEE-SS-EEEEEEE--TTEEEE---EEEES-SHHHHHHHHHHHTT---------------------
T ss_pred HhCCcccccceEEEEEecCCeEEEEEEE--CCEEEE---EEEEeeCHHHHHHHHHHhcC--------CC-----------
Confidence 1 11 12346899999999999999987 444332 23368999999999987741 11
Q ss_pred HHHHHHHHHHccCCCceEEEEcccccCeeEEEEEcHHHHHHHHHHHHhHHHHHHHHHHHh--cCCCCCCCCeEEEEcCcc
Q 043296 270 RTACERAKRTLSSTTQTTIEIDSLYEGIDFYATITRARFEELNMDLFRKCMEPVEKCLRD--SKIDKSLVHDIVLVGGST 347 (650)
Q Consensus 270 ~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~--~~~~~~~i~~V~LvGG~s 347 (650)
..+||..|..-+... +...+.+.+.++++...|++.++- .......|+.|+|+||++
T Consensus 227 ~~~Ae~~k~~~~l~~---------------------~~~~~~l~~~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga 285 (340)
T PF11104_consen 227 FEEAEELKRSGGLPE---------------------EYDQDALRPFLEELAREIRRSLDFYQSQSGGESIERIYLSGGGA 285 (340)
T ss_dssp HHHHHHHHHHT---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH------SEEEEESGGG
T ss_pred HHHHHHHHhcCCCCc---------------------chHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCcc
Confidence 346777776522111 233456777777777777777773 223445799999999999
Q ss_pred CcHHHHHHHHhhhCCccc---------cccC----------CcchhHHhHHHHHH
Q 043296 348 RIPKVQQLLQDFFNGKEL---------CKSI----------NPDEAVAYGAAVQA 383 (650)
Q Consensus 348 r~p~v~~~l~~~f~~~~i---------~~~~----------~p~~ava~GAa~~a 383 (650)
++|.|.+.|++.++ .++ ..+. .|..++|.|.|+..
T Consensus 286 ~l~gL~~~l~~~l~-~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~avA~GLAlR~ 339 (340)
T PF11104_consen 286 RLPGLAEYLSEELG-IPVEVINPFKNIKLDPKINSEYLQEDAPQFAVALGLALRG 339 (340)
T ss_dssp GSTTHHHHHHHHHT-SEEEE--GGGGSB--TTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHC-CceEEcChHHhCccCcccChhhhhhhhhHHHHHHHHhhcC
Confidence 99999999999993 322 1111 26678999999864
No 45
>PTZ00466 actin-like protein; Provisional
Probab=99.25 E-value=5.1e-10 Score=118.56 Aligned_cols=234 Identities=15% Similarity=0.137 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHH-HHHcCCceeeecchhHHHHHhcccccccCCCCCce
Q 043296 122 EISSMVLTKMKEIAEAYLGHAVKNAVVTVPAYFNDSQRQATKDA-GAIAGLNVMRIINEPTAAAIAYGLDKKASRTGEKN 200 (650)
Q Consensus 122 ~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A-a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~ 200 (650)
+....+++|+.+.. .....-..+++|-|..++..+|+.+.+. .+..+++.+.+.+.|.+++++++. .+
T Consensus 87 d~~e~iw~~~f~~l--~v~~~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~---------~t 155 (380)
T PTZ00466 87 NDMENIWIHVYNSM--KINSEEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGK---------TN 155 (380)
T ss_pred HHHHHHHHHHHhhc--ccCCccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCC---------ce
Confidence 44455555554221 1122345678899999999999998665 466788888999999999987642 35
Q ss_pred EEEEEeCCcceEEEEEEEeCCEEEEEEeeCCCCCChhHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHc
Q 043296 201 VLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVAEFRRKHKKDISGNARALRRLRTACERAKRTL 280 (650)
Q Consensus 201 vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~l 280 (650)
-+|||+|.+.|.++-+. +|..- ........+||.++++.|.+.+.+. .+..+.. .-+..++.+|+.+
T Consensus 156 glVVD~G~~~t~v~PV~--~G~~~-~~~~~~~~~GG~~lt~~L~~lL~~~---~~~~~~~-------~~~~~v~~iKe~~ 222 (380)
T PTZ00466 156 GTVLDCGDGVCHCVSIY--EGYSI-TNTITRTDVAGRDITTYLGYLLRKN---GHLFNTS-------AEMEVVKNMKENC 222 (380)
T ss_pred EEEEeCCCCceEEEEEE--CCEEe-ecceeEecCchhHHHHHHHHHHHhc---CCCCCcH-------HHHHHHHHHHHhC
Confidence 69999999999997665 33222 2222235899999999998876431 1111111 1123355566654
Q ss_pred cCCC---------------ceEEEEcccccCeeEEEEEcHHHH---HHHHHHHH-----hHHHHHHHHHHHhcCCC--CC
Q 043296 281 SSTT---------------QTTIEIDSLYEGIDFYATITRARF---EELNMDLF-----RKCMEPVEKCLRDSKID--KS 335 (650)
Q Consensus 281 s~~~---------------~~~~~i~~~~~~~~~~~~itr~~f---e~~~~~~~-----~~i~~~i~~~l~~~~~~--~~ 335 (650)
+.-. ...+. +.+|.. +.|..+.| |-++.|-+ ..+.+.|.+++..+..+ ..
T Consensus 223 c~v~~d~~~e~~~~~~~~~~~~y~---LPdg~~--i~l~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~ 297 (380)
T PTZ00466 223 CYVSFNMNKEKNSSEKALTTLPYI---LPDGSQ--ILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRT 297 (380)
T ss_pred eEecCChHHHHhhccccccceeEE---CCCCcE--EEEchHHhcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHHH
Confidence 3210 01111 223332 45666665 34444422 24566777777765432 23
Q ss_pred CCCeEEEEcCccCcHHHHHHHHhhhCC-------ccccccCCcchhHHhHHHHHHH
Q 043296 336 LVHDIVLVGGSTRIPKVQQLLQDFFNG-------KELCKSINPDEAVAYGAAVQAA 384 (650)
Q Consensus 336 ~i~~V~LvGG~sr~p~v~~~l~~~f~~-------~~i~~~~~p~~ava~GAa~~a~ 384 (650)
-...|+|+||+|.+|.+.++|.+.+.. .++..+.++..++=+|++++|.
T Consensus 298 L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~~v~v~~~~~r~~~aW~GgSilas 353 (380)
T PTZ00466 298 LYSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRISAPPERKFSTFIGGSILAS 353 (380)
T ss_pred HhhcEEEeCCccccCCHHHHHHHHHHHhCCCCceEEEecCCCCceeEEECchhhcC
Confidence 467899999999999999999887621 1234445666677788888775
No 46
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=99.12 E-value=8.8e-10 Score=114.01 Aligned_cols=174 Identities=17% Similarity=0.268 Sum_probs=100.1
Q ss_pred ceeeecchhHHHHHhcccccccCCCCCceEEEEEeCCcceEEEEEEEeCCEEEEEEeeCCCCCChhHHHHHHHHHHHHHH
Q 043296 172 NVMRIINEPTAAAIAYGLDKKASRTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVAEF 251 (650)
Q Consensus 172 ~~~~li~Ep~Aaal~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~ 251 (650)
..+.+++||.||.+.+.... .+...++|+|+||+|+|++++.- +.-.+....+...+|-..+-..+.+.+...
T Consensus 141 ~~V~V~PQ~~~A~~~~~~~~----~~~~~~lVVDIGG~T~Dv~~v~~--~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~~- 213 (318)
T PF06406_consen 141 KDVEVFPQSVGAVFDALMDL----DEDESVLVVDIGGRTTDVAVVRG--GLPDISKCSGTPEIGVSDLYDAIAQALRSA- 213 (318)
T ss_dssp EEEEEEESSHHHHHHHHHTS-----TTSEEEEEEE-SS-EEEEEEEG--GG--EEEEEEETTSSTHHHHHHHHHHTT---
T ss_pred eeEEEEcccHHHHHHHHHhh----cccCcEEEEEcCCCeEEeeeecC--CccccchhccCCchhHHHHHHHHHHHHHHh-
Confidence 45788999999999887652 23567999999999999999862 211222334446789988888887776441
Q ss_pred HhhcCCCCCccHHHHHHHHHHHHHHHHHccCCCceEEEEcccccCeeEEEEEcHHHHHHHHHHHHhHHHHHHHHHHHhcC
Q 043296 252 RRKHKKDISGNARALRRLRTACERAKRTLSSTTQTTIEIDSLYEGIDFYATITRARFEELNMDLFRKCMEPVEKCLRDSK 331 (650)
Q Consensus 252 ~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~ 331 (650)
+.. .+......+.+... -+..++. .....+ ..+++.++++..++++.+.|.+.+..
T Consensus 214 ----~~~--~s~~~~~~ii~~~~-~~~~~~~----------~i~~~~-----~~~~v~~~i~~~~~~l~~~i~~~~~~-- 269 (318)
T PF06406_consen 214 ----GID--TSELQIDDIIRNRK-DKGYLRQ----------VINDED-----VIDDVSEVIEEAVEELINRILRELGD-- 269 (318)
T ss_dssp ----SBH--HHHHHHHHHHHTTT--HHHHHH----------HSSSHH-----HHHHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred ----cCC--CcHHHHHHHHHhhh-ccceecc----------cccchh-----hHHHHHHHHHHHHHHHHHHHHHHHhh--
Confidence 110 01111111111000 0000000 001100 13445555555666666666555543
Q ss_pred CCCCCCCeEEEEcCccCcHHHHHHHHhhhC--CccccccCCcchhHHhHHH
Q 043296 332 IDKSLVHDIVLVGGSTRIPKVQQLLQDFFN--GKELCKSINPDEAVAYGAA 380 (650)
Q Consensus 332 ~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~--~~~i~~~~~p~~ava~GAa 380 (650)
..+++.|+|+||++ ..+.+.|++.|+ ...+...-||+.|-|+|-+
T Consensus 270 --~~~~~~I~~vGGGA--~ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 270 --FSDIDRIFFVGGGA--ILLKDAIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp --S-S-SEEEEESTTH--HHHHHHHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred --hccCCeEEEECCcH--HHHHHHHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 34678999999996 678899999985 3467888899999999965
No 47
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=98.99 E-value=2.3e-08 Score=99.89 Aligned_cols=169 Identities=17% Similarity=0.215 Sum_probs=109.9
Q ss_pred eecchhHHHHHhcccccccCCCCCceEEEEEeCCcceEEEEEEEeCCEEEEEEeeCCCCCChhHHHHHHHHHHHHHHHhh
Q 043296 175 RIINEPTAAAIAYGLDKKASRTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVAEFRRK 254 (650)
Q Consensus 175 ~li~Ep~Aaal~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~ 254 (650)
..++|.+|.+.....-.. +.=.|+|+||..+-+..+. ++.+.-......+..|+-.|.+.+++.+
T Consensus 73 ~~~~ei~~~~~g~~~~~~------~~~~vidiGgqd~k~i~~~--~g~~~~~~~n~~ca~Gtg~f~e~~a~~l------- 137 (248)
T TIGR00241 73 KIVTEISCHGKGANYLAP------EARGVIDIGGQDSKVIKID--DGKVDDFTMNDKCAAGTGRFLEVTARRL------- 137 (248)
T ss_pred CceEEhhHHHHHHHHHCC------CCCEEEEecCCeeEEEEEC--CCcEeeeeecCcccccccHHHHHHHHHc-------
Confidence 467788876655433221 1226999999988888887 5665555566778889988988887764
Q ss_pred cCCCCCccHHHHHHHHHHHHHHHHHc----cCCCceEEEEcc-cccCeeEEEEEcHHHHHHHHHHHHhHHHHHHHHHHHh
Q 043296 255 HKKDISGNARALRRLRTACERAKRTL----SSTTQTTIEIDS-LYEGIDFYATITRARFEELNMDLFRKCMEPVEKCLRD 329 (650)
Q Consensus 255 ~~~~~~~~~~~~~~L~~~~e~~K~~l----s~~~~~~~~i~~-~~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~ 329 (650)
+++ .++++..+..- .-+..+.+..+. ...... ...+ .++++..+++.+...+.+.+..
T Consensus 138 -~~~-----------~~e~~~~~~~~~~~~~~~~~c~vf~~s~vi~~l~--~g~~---~~di~~~~~~~va~~i~~~~~~ 200 (248)
T TIGR00241 138 -GVS-----------VEELGSLAEKADRKAKISSMCTVFAESELISLLA--AGVK---KEDILAGVYESIAERVAEMLQR 200 (248)
T ss_pred -CCC-----------HHHHHHHHhcCCCCCCcCCEeEEEechhHHHHHH--CCCC---HHHHHHHHHHHHHHHHHHHHhh
Confidence 222 22333333331 112223333221 000000 0112 2566777777777777776654
Q ss_pred cCCCCCCCC-eEEEEcCccCcHHHHHHHHhhhCCccccccCCcchhHHhHHHH
Q 043296 330 SKIDKSLVH-DIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAV 381 (650)
Q Consensus 330 ~~~~~~~i~-~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~p~~ava~GAa~ 381 (650)
.. ++ .|+|+||.+++|++.+.+.+.+ +.++..+.+|..+.|+|||+
T Consensus 201 ~~-----~~~~Vvl~GGva~n~~l~~~l~~~l-g~~v~~~~~~~~~~AlGaAl 247 (248)
T TIGR00241 201 LK-----IEAPIVFTGGVSKNKGLVKALEKKL-GMKVITPPEPQIVGAVGAAL 247 (248)
T ss_pred cC-----CCCCEEEECccccCHHHHHHHHHHh-CCcEEcCCCccHHHHHHHHh
Confidence 43 44 7999999999999999999999 68888899999999999997
No 48
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.88 E-value=6.1e-07 Score=88.69 Aligned_cols=158 Identities=16% Similarity=0.211 Sum_probs=110.3
Q ss_pred HHHHHHHHHHcCCceeeecchhHHHHHhcccc-cccCC-CCCceEEEEEeCCcceEEEEEEEeCCEEEEEEeeCCCCCCh
Q 043296 159 RQATKDAGAIAGLNVMRIINEPTAAAIAYGLD-KKASR-TGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGG 236 (650)
Q Consensus 159 r~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~-~~~~~-~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG 236 (650)
.....+|++.|||....+--|..|.--+|..- ..... ....+++|+|+|+..+.+.++.-.. .-+..+..+||
T Consensus 151 v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~gk-----~ly~r~~~~g~ 225 (354)
T COG4972 151 VESRIDAFELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDGK-----ILYTREVPVGT 225 (354)
T ss_pred hHHHHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEECCe-----eeeEeeccCcH
Confidence 45557899999999888888888876666421 11111 1123378999999999999998544 33345578999
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHccCCCceEEEEcccccCeeEEEEEcHHHHHHHHHHHH
Q 043296 237 EDFDNRLVNHFVAEFRRKHKKDISGNARALRRLRTACERAKRTLSSTTQTTIEIDSLYEGIDFYATITRARFEELNMDLF 316 (650)
Q Consensus 237 ~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~fe~~~~~~~ 316 (650)
+.+++.+.+.+ +.+ ...++.+|....... +--.++..+++
T Consensus 226 ~Qlt~~i~r~~--------~L~-----------~~~a~~~k~~~~~P~---------------------~y~~~vl~~f~ 265 (354)
T COG4972 226 DQLTQEIQRAY--------SLT-----------EEKAEEIKRGGTLPT---------------------DYGSEVLRPFL 265 (354)
T ss_pred HHHHHHHHHHh--------CCC-----------hhHhHHHHhCCCCCC---------------------chhHHHHHHHH
Confidence 99999987653 333 235677777644332 11235566777
Q ss_pred hHHHHHHHHHHHhc--CCCCCCCCeEEEEcCccCcHHHHHHHHhhhC
Q 043296 317 RKCMEPVEKCLRDS--KIDKSLVHDIVLVGGSTRIPKVQQLLQDFFN 361 (650)
Q Consensus 317 ~~i~~~i~~~l~~~--~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~ 361 (650)
+.+.+.|.+.|+-. .-...+|+.|+|.||++++-.+.+.+.+.++
T Consensus 266 ~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl~ 312 (354)
T COG4972 266 GELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRLS 312 (354)
T ss_pred HHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHhC
Confidence 77777777777632 2234579999999999999999999999883
No 49
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=98.88 E-value=1.7e-07 Score=93.87 Aligned_cols=116 Identities=14% Similarity=0.200 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHH-HHHcCCceeeecchhHHHHHhcccccccCCCCCce
Q 043296 122 EISSMVLTKMKEIAEAYLGHAVKNAVVTVPAYFNDSQRQATKDA-GAIAGLNVMRIINEPTAAAIAYGLDKKASRTGEKN 200 (650)
Q Consensus 122 ~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A-a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~ 200 (650)
++..+.++|..+.-. .....-.-++||-|++=+.+.|+.+.+. .+...++...|..+|+++|++.+ ..+
T Consensus 86 D~~~~~w~~~~~~~L-k~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~G---------rst 155 (426)
T KOG0679|consen 86 DLFEMQWRYAYKNQL-KVNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANG---------RST 155 (426)
T ss_pred HHHHHHHHHHHhhhh-hcCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcC---------CCc
Confidence 556666666653211 1222334579999999999999888765 46667788889999999998754 346
Q ss_pred EEEEEeCCcceEEEEEEEeCCEEEEEEeeCCCCCChhHHHHHHHHHHHHH
Q 043296 201 VLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVAE 250 (650)
Q Consensus 201 vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~ 250 (650)
.||+|+|++++.++-+. +|.+-..+... .++||+.++..+.+.|..+
T Consensus 156 alVvDiGa~~~svsPV~--DG~Vlqk~vvk-s~laGdFl~~~~~q~l~~~ 202 (426)
T KOG0679|consen 156 ALVVDIGATHTSVSPVH--DGYVLQKGVVK-SPLAGDFLNDQCRQLLEPK 202 (426)
T ss_pred eEEEEecCCCceeeeee--cceEeeeeeEe-cccchHHHHHHHHHHHhhc
Confidence 79999999999998765 44443344444 6899999999999988764
No 50
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=98.79 E-value=2.7e-07 Score=98.42 Aligned_cols=98 Identities=14% Similarity=0.157 Sum_probs=72.0
Q ss_pred CCcEEEEeCCCCCHHHHHHHHHH-HHHcCCceeeecchhHHHHHhcccccccCCCCCceEEEEEeCCcceEEEEEEEeCC
Q 043296 143 VKNAVVTVPAYFNDSQRQATKDA-GAIAGLNVMRIINEPTAAAIAYGLDKKASRTGEKNVLIFDLGGGTFDVSLLTIEEG 221 (650)
Q Consensus 143 ~~~~VitVPa~~~~~qr~~l~~A-a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~ 221 (650)
-..+++|-|..+....|..+.+. .+...+..+.+..++.+++++.+... .+.+|+|+|.+.++|+-+--.-
T Consensus 106 ~~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~~-------~~g~ViD~G~~~t~v~PV~DG~- 177 (444)
T COG5277 106 EHPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASGSSD-------ETGLVIDSGDSVTHVIPVVDGI- 177 (444)
T ss_pred CCceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCCCC-------CceEEEEcCCCceeeEeeeccc-
Confidence 34689999999999999887664 46667777778888887776654321 4679999999999998665221
Q ss_pred EEEEEEeeCCCCCChhHHHHHHHHHHHHH
Q 043296 222 IFEVKATAGDTHLGGEDFDNRLVNHFVAE 250 (650)
Q Consensus 222 ~~~v~~~~~~~~lGG~~~d~~l~~~l~~~ 250 (650)
.+........+||++++..|.+.|...
T Consensus 178 --~l~~a~~ri~~gG~~it~~l~~lL~~~ 204 (444)
T COG5277 178 --VLPKAVKRIDIGGRDITDYLKKLLREK 204 (444)
T ss_pred --cccccceeeecCcHHHHHHHHHHHhhc
Confidence 112222336899999999998888764
No 51
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=98.77 E-value=2.8e-06 Score=84.79 Aligned_cols=182 Identities=18% Similarity=0.154 Sum_probs=99.3
Q ss_pred eecchhHHHHHhcccccccCCCCCceEEEEEeCCcceEEEEEEEeCCEEEEEEeeCCCCCChhHHHHHHHHHHHHHHHhh
Q 043296 175 RIINEPTAAAIAYGLDKKASRTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVAEFRRK 254 (650)
Q Consensus 175 ~li~Ep~Aaal~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~ 254 (650)
..++|.+|.|....... ++..-.|+|+||-.+-+..+. .++.+.-.....-+.-|.-.|=+.+++.|
T Consensus 106 ~~v~EItaha~Ga~~~~-----pp~v~tIIDIGGQDsK~I~~d-~~G~v~dF~MNdkCAAGTGrFLE~~A~~L------- 172 (293)
T TIGR03192 106 KAITEIACHARGANYMG-----GNAVRTILDMGGQDCKAIHCD-EKGKVTNFLMNDKCAAGTGRGMEVISDLM------- 172 (293)
T ss_pred cceeeHHHHHHHHHHhc-----CCCCCEEEEeCCCceEEEEEc-CCCcEeeeeecCcccccccHHHHHHHHHc-------
Confidence 45899998776553322 122348999999766554441 34554444444444445333333344443
Q ss_pred cCCCCCccHHHHHHHHHHHHHHH-HHccCCCceEEEEcccccCeeEEEEEcHHHHHHHHHHHHhHHHHHHHHHHHhcCCC
Q 043296 255 HKKDISGNARALRRLRTACERAK-RTLSSTTQTTIEIDSLYEGIDFYATITRARFEELNMDLFRKCMEPVEKCLRDSKID 333 (650)
Q Consensus 255 ~~~~~~~~~~~~~~L~~~~e~~K-~~ls~~~~~~~~i~~~~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~ 333 (650)
++++ ..+.. .+.+.+ ....-+..+.+..++-.-. -..--.++ ++++..+...+...+...+...++.
T Consensus 173 -gi~l----eel~~---~a~~~~~~p~~Iss~CtVFAeSevi~-l~~~G~~~---edI~aGl~~sia~rv~~~~~~~~i~ 240 (293)
T TIGR03192 173 -QIPI----ADLGP---RSFDVETEPEAVSSICVVFAKSEALG-LLKAGYTK---NMVIAAYCQAMAERVVSLLERIGVE 240 (293)
T ss_pred -CCCH----HHHHH---HHHhcCCCCCCcCCcceEeccHhHHH-HHHCCCCH---HHHHHHHHHHHHHHHHHHhcccCCC
Confidence 2221 11111 121221 2222233344443320000 00011233 3344455555555554455443322
Q ss_pred CCCCCeEEEEcCccCcHHHHHHHHhhhCCcccc-ccCCcchhHHhHHHHHHHHH
Q 043296 334 KSLVHDIVLVGGSTRIPKVQQLLQDFFNGKELC-KSINPDEAVAYGAAVQAAIL 386 (650)
Q Consensus 334 ~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~-~~~~p~~ava~GAa~~a~~~ 386 (650)
..|+|+||.++.|.+++.+++.+ +.++. .+.+|+.+.|+|||++|...
T Consensus 241 ----~~v~~~GGva~N~~l~~al~~~L-g~~v~~~p~~p~~~GAlGAAL~A~~~ 289 (293)
T TIGR03192 241 ----EGFFITGGIAKNPGVVKRIERIL-GIKAVDTKIDSQIAGALGAALFGYTL 289 (293)
T ss_pred ----CCEEEECcccccHHHHHHHHHHh-CCCceeCCCCccHHHHHHHHHHHHHH
Confidence 35899999999999999999999 56665 57789999999999998643
No 52
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=98.64 E-value=2.2e-07 Score=97.27 Aligned_cols=83 Identities=19% Similarity=0.276 Sum_probs=59.5
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHH------------cCCceeeecchhHHHHHhcccccccCCCCCceEEEEEeCCcceE
Q 043296 145 NAVVTVPAYFNDSQRQATKDAGAI------------AGLNVMRIINEPTAAAIAYGLDKKASRTGEKNVLIFDLGGGTFD 212 (650)
Q Consensus 145 ~~VitVPa~~~~~qr~~l~~Aa~~------------AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~vlV~D~GggT~d 212 (650)
-.+||-++.. ++.++++++. ||++...++. |.|++.+...+ .++..++++|+||||++
T Consensus 90 ahIITg~~~~----~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avLse-----Eke~gVa~IDIGgGTT~ 159 (475)
T PRK10719 90 AVIITGETAR----KENAREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTLSE-----ERNTRVLNIDIGGGTAN 159 (475)
T ss_pred EEEEEechhH----HHHHHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHhhh-----hccCceEEEEeCCCceE
Confidence 3478887664 5555566665 6777666666 99988877633 25778999999999999
Q ss_pred EEEEEEeCCEEEEEEeeCCCCCChhHHHHH
Q 043296 213 VSLLTIEEGIFEVKATAGDTHLGGEDFDNR 242 (650)
Q Consensus 213 vsv~~~~~~~~~v~~~~~~~~lGG~~~d~~ 242 (650)
++++.-.. +.+.+..++||+.++..
T Consensus 160 iaVf~~G~-----l~~T~~l~vGG~~IT~D 184 (475)
T PRK10719 160 YALFDAGK-----VIDTACLNVGGRLIETD 184 (475)
T ss_pred EEEEECCE-----EEEEEEEecccceEEEC
Confidence 99998443 33344478999988644
No 53
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=98.60 E-value=1.2e-05 Score=79.07 Aligned_cols=178 Identities=12% Similarity=0.070 Sum_probs=97.9
Q ss_pred ecchhHHHHHhcccccccCCCCCceEEEEEeCCcceEEEEEEE-eCCEEEEEEeeCCCCCChhHHHHHHHHHHHHHHHhh
Q 043296 176 IINEPTAAAIAYGLDKKASRTGEKNVLIFDLGGGTFDVSLLTI-EEGIFEVKATAGDTHLGGEDFDNRLVNHFVAEFRRK 254 (650)
Q Consensus 176 li~Ep~Aaal~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~-~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~ 254 (650)
.++|.+|.|....+.. ++.=.|+|+||-.+-+ +++ .++.+.-.....-+.-|.-.|=+.+++.|
T Consensus 80 ~vtEIt~ha~GA~~~~------p~~~tIiDIGGQD~K~--I~~~~~G~v~~f~MNdkCAAGTG~FLe~~A~~L------- 144 (262)
T TIGR02261 80 HFYSMTTHARGAIYLN------PEARAVLDIGALHGRA--IRMDERGKVEAYKMTSQCASGSGQFLENIARYL------- 144 (262)
T ss_pred CeeEEeHHHHHHHHHC------CCCCEEEEeCCCceEE--EEEcCCCcEeeEEecCcccccccHHHHHHHHHh-------
Confidence 3568877766553322 2233899999976665 444 34555444444444445434433444443
Q ss_pred cCCCCCccHHHHHHHHHHHHHHHHHccCCCceEEEEcccccCeeEEEEEcHHHHHHHHHHHHhHHHHHHHHHHHhcCCCC
Q 043296 255 HKKDISGNARALRRLRTACERAKRTLSSTTQTTIEIDSLYEGIDFYATITRARFEELNMDLFRKCMEPVEKCLRDSKIDK 334 (650)
Q Consensus 255 ~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~ 334 (650)
+.++ ..|-..+.+.++...-+..+.+..++-.-. -+.--.+| ++++..+...+...+...++..+..
T Consensus 145 -~i~l-------eel~~~a~~~~~~~~iss~CtVFaeSevi~-~~~~G~~~---edI~aGl~~sia~r~~~~~~~~~~~- 211 (262)
T TIGR02261 145 -GIAQ-------DEIGSLSQQADNPEKVSGICAVLAETDVIN-MVSRGISA---PNILKGIHESMADRLAKLLKSLGAL- 211 (262)
T ss_pred -CCCH-------HHHHHHHhcCCCCCCcCCCceEEchhhHHH-HHHCCCCH---HHHHHHHHHHHHHHHHHHHhccCCC-
Confidence 2221 112222333443333344455444321000 00011233 4455555555555555555544321
Q ss_pred CCCCeEEEEcCccCcHHHHHHHHhhhCCcc----ccccCCcchhHHhHHHHHH
Q 043296 335 SLVHDIVLVGGSTRIPKVQQLLQDFFNGKE----LCKSINPDEAVAYGAAVQA 383 (650)
Q Consensus 335 ~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~----i~~~~~p~~ava~GAa~~a 383 (650)
-+.|+|+||.++.+.+.+.|++.+++.+ +..+.+|+.+-|+|||++|
T Consensus 212 --~~~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 212 --DGTVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred --CCcEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 1359999999999999999999885333 5556789999999999874
No 54
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=98.58 E-value=8.3e-06 Score=84.59 Aligned_cols=176 Identities=20% Similarity=0.213 Sum_probs=99.5
Q ss_pred eecchhHHHHHhcccccccCCCCCceEEEEEeCCcceEEEEEEEeCCEEEEEEeeCCCCCChhHHHHHHHHHHHHHHHhh
Q 043296 175 RIINEPTAAAIAYGLDKKASRTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVAEFRRK 254 (650)
Q Consensus 175 ~li~Ep~Aaal~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~ 254 (650)
..++|-+|.|....+-.. ..+..-.|+|+||- |.-++++.++.+.-....+-+.-|+-.|=+.+++.|
T Consensus 220 ~iv~EItaha~GA~~L~p---~~~~v~TIIDIGGQ--DsK~I~l~~G~v~dF~MNdkCAAGTGrFLE~~A~~L------- 287 (404)
T TIGR03286 220 LIQEELTVNSKGAVYLAD---KQEGPATVIDIGGM--DNKAISVWDGIPDNFTMGGICAGASGRFLEMTAKRL------- 287 (404)
T ss_pred ceEEEEhhHHHHHHHhcc---cCCCCcEEEEeCCC--ceEEEEEcCCceeeEEEcCcccccCcHHHHHHHHHh-------
Confidence 347888886544322211 11235699999995 444555567766555555545545444444555543
Q ss_pred cCCCCCccHHHHHHHHHHHHHHH-HHccCCCceEEEEcc-----cccCeeEEEEEcHHHHHHHHHHHHhHHHHHHHH-HH
Q 043296 255 HKKDISGNARALRRLRTACERAK-RTLSSTTQTTIEIDS-----LYEGIDFYATITRARFEELNMDLFRKCMEPVEK-CL 327 (650)
Q Consensus 255 ~~~~~~~~~~~~~~L~~~~e~~K-~~ls~~~~~~~~i~~-----~~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~-~l 327 (650)
+.++ ..|-..+.+.+ +...-+..+.+.-++ +..| .++ ++++..+...+...+.. ++
T Consensus 288 -gi~i-------eEl~~lA~~~~~~pv~IsS~CtVFaeSevIsll~~G------~~~---eDIaAGl~~SIa~rv~~~l~ 350 (404)
T TIGR03286 288 -GVDI-------TELGKLALKGMPEKVRMNSYCIVFGIQDLVTALAEG------ASP---EDVAAAACHSVAEQVYEQQL 350 (404)
T ss_pred -CCCH-------HHHHHHHHhCCCCCCCccCcccccccHhHHHHHHCC------CCH---HHHHHHHHHHHHHHHHHHHh
Confidence 2221 12222222322 111112222222111 0111 233 44445555555554443 34
Q ss_pred HhcCCCCCCCCeEEEEcCccCcHHHHHHHHhhhCCccccccCCcchhHHhHHHHHHH
Q 043296 328 RDSKIDKSLVHDIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAA 384 (650)
Q Consensus 328 ~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~p~~ava~GAa~~a~ 384 (650)
+..++ -+.|+++||.++.+.+.+.+++.+ +.++..+.+|+.+.|+|||++|.
T Consensus 351 ~~~~i----~~~VvftGGva~N~gvv~ale~~L-g~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 351 QEIDV----REPVILVGGTSLIEGLVKALGDLL-GIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred hcCCC----CCcEEEECChhhhHHHHHHHHHHh-CCcEEECCcccHHHHHHHHHHhc
Confidence 43332 234999999999999999999999 67899999999999999999974
No 55
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=98.54 E-value=2e-05 Score=79.73 Aligned_cols=175 Identities=21% Similarity=0.266 Sum_probs=106.3
Q ss_pred eecchhHHHHHhcccccccCCCCCceEEEEEeCCcceEEEEEEEeCCEEEEEEeeCCCCCChhHHHHHHHHHHHHHHHhh
Q 043296 175 RIINEPTAAAIAYGLDKKASRTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVAEFRRK 254 (650)
Q Consensus 175 ~li~Ep~Aaal~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~ 254 (650)
..++|-+|-+....+.... .=.|+|+||--.-+ +++.+|.+.-.....-+.-|.-.|-+.+++.|
T Consensus 211 ~~~~Ei~ah~kgA~~f~p~------~dtIiDIGGQD~K~--i~i~dG~v~df~mN~~CAAGtGrFLE~~A~~L------- 275 (396)
T COG1924 211 KVVVEISAHAKGARYFAPD------VDTVIDIGGQDSKV--IKLEDGKVDDFTMNDKCAAGTGRFLEVIARRL------- 275 (396)
T ss_pred cceeeeehhHHHHHHhCCC------CcEEEEecCcceeE--EEEeCCeeeeeEeccccccccchHHHHHHHHh-------
Confidence 4566666655544322221 11899999965554 45557766655555444444444444444433
Q ss_pred cCCCCCccHHHHHHHHHHHHHHHHHccCCCceEEEEcc-----cccCeeEEEEEcHHHHHHHHHHHHhHHHHHHHH-HHH
Q 043296 255 HKKDISGNARALRRLRTACERAKRTLSSTTQTTIEIDS-----LYEGIDFYATITRARFEELNMDLFRKCMEPVEK-CLR 328 (650)
Q Consensus 255 ~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~i~~-----~~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~-~l~ 328 (650)
+.++ ..|-+.+++.+..-.-+..+.+..++ +..|. ..|+++..+...+...+-. +++
T Consensus 276 -gv~v-------~E~~~~A~~~~~~v~i~S~CaVF~eSevi~~~~~G~---------~~EdI~AGl~~Sv~~~v~~~~~~ 338 (396)
T COG1924 276 -GVDV-------EELGKLALKATPPVKINSRCAVFAESEVISALAEGA---------SPEDILAGLAYSVAENVAEKVIK 338 (396)
T ss_pred -CCCH-------HHHHHHHhcCCCCcccCCeeEEEehHHHHHHHHcCC---------CHHHHHHHHHHHHHHHHHHHHhh
Confidence 3331 22333344444433333444444332 11121 2366777777777665555 555
Q ss_pred hcCCCCCCCCeEEEEcCccCcHHHHHHHHhhhCCccccccCCcchhHHhHHHHHHHHH
Q 043296 329 DSKIDKSLVHDIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAIL 386 (650)
Q Consensus 329 ~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~p~~ava~GAa~~a~~~ 386 (650)
...+.. + |+|+||.+....+.+++++.+ +.++.++.+|+..-|.|||+++...
T Consensus 339 ~~~i~~--~--iv~~GGva~n~av~~ale~~l-g~~V~vP~~~ql~GAiGAAL~a~~~ 391 (396)
T COG1924 339 RVDIEE--P--IVLQGGVALNKAVVRALEDLL-GRKVIVPPYAQLMGAIGAALIAKEV 391 (396)
T ss_pred ccCCCC--C--EEEECcchhhHHHHHHHHHHh-CCeeecCCccchhhHHHHHHHHhhh
Confidence 543322 2 999999999999999999999 6899999999999999999998643
No 56
>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function. It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity [].
Probab=98.34 E-value=8.7e-05 Score=84.43 Aligned_cols=330 Identities=15% Similarity=0.240 Sum_probs=184.8
Q ss_pred EEecHHHHHhHhh----CcCchhhhhhHhcCC--------CCCChhhhhh----cccCCeEEEeCCCCCceEEE-EE---
Q 043296 52 RLIGDAAKNQVAM----NPQNTVFDAKRLIGR--------RFSDPSVQSD----MRHWPFKVASGPGDKPMIAV-TY--- 111 (650)
Q Consensus 52 ~~~G~~A~~~~~~----~~~~~~~~~k~~lg~--------~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~--- 111 (650)
..||.+|...+.. .....+.+.||+|-. .|+....... ....|+.-..++.|.+.+.+ ..
T Consensus 330 vRVG~EA~RLa~~r~GtEg~TGlSSPKRYLWDe~~~~q~WRFn~~~~~~~~eP~ata~p~~~liN~~G~~L~~l~~~~~r 409 (1002)
T PF07520_consen 330 VRVGPEAARLASQRRGTEGSTGLSSPKRYLWDERPYEQGWRFNSAYVKSQNEPLATAAPFTNLINDDGQPLYQLDPEDER 409 (1002)
T ss_pred ceecHHHHHHHHHhcCCccccCCCCchhhccCCCccCCCcccCCCCCCCccCchhhhHHHHHhhcccCcchhhhcCcccc
Confidence 3589888766543 334456788888843 2221111000 11112222223445554443 11
Q ss_pred -CCcceEecHHHHHHHHHHHHHHHHHHHhcC--------------CCCcEEEEeCCCCCHHHHHHHHHHHHHc-------
Q 043296 112 -KGEEKRFSPEEISSMVLTKMKEIAEAYLGH--------------AVKNAVVTVPAYFNDSQRQATKDAGAIA------- 169 (650)
Q Consensus 112 -~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~--------------~~~~~VitVPa~~~~~qr~~l~~Aa~~A------- 169 (650)
......||-..+..++|..|..+|.-+++. ....+++|||..-...+|+.++++++.|
T Consensus 410 ~pvf~p~ySRSSLMtfML~EiL~QAL~QINSpa~R~r~~~~~~PR~LR~IILT~P~AMPk~Er~ifr~r~~~Ai~LvWk~ 489 (1002)
T PF07520_consen 410 LPVFSPHYSRSSLMTFMLSEILAQALMQINSPAQRLRRGHSDAPRRLRRIILTLPPAMPKPEREIFRRRMEEAIGLVWKA 489 (1002)
T ss_pred CccccccccHHHHHHHHHHHHHHHHHHHhcCHHHHhhcccCCCChhhhheeEECCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 112235677788888888888877766542 3567899999999999999999888765
Q ss_pred -CCc---------------------eeeecchhHHHHHhcccc------------------cccC-------CCCCceEE
Q 043296 170 -GLN---------------------VMRIINEPTAAAIAYGLD------------------KKAS-------RTGEKNVL 202 (650)
Q Consensus 170 -Gl~---------------------~~~li~Ep~Aaal~y~~~------------------~~~~-------~~~~~~vl 202 (650)
|.. +..=-+|.+|.-+-|.+. +... ..+.-+|.
T Consensus 490 lGw~~~~~~~~~~~~~~~~~~~~P~v~~~WDEATC~QlVyLYnE~~~~fgG~~~~FF~~~~rp~~~~~~~~~~~~slriA 569 (1002)
T PF07520_consen 490 LGWHPWDDDFDTNKDREKSWVPLPEVQMEWDEATCGQLVYLYNEIQVKFGGRAEEFFALMARPDRQPAPGEDPGPSLRIA 569 (1002)
T ss_pred cCCCCCCCCcccccccccccCCCCceeEEeecceeeeeeehhHHHHHHcCCCHHHHHHHhcCCCccccccCCCCCceEEE
Confidence 421 001124555544444221 1111 11234689
Q ss_pred EEEeCCcceEEEEEEEe----CC-EEEEEEe---eCCCCCChhHHHHHHHHH-HHHHHHh----------------hcCC
Q 043296 203 IFDLGGGTFDVSLLTIE----EG-IFEVKAT---AGDTHLGGEDFDNRLVNH-FVAEFRR----------------KHKK 257 (650)
Q Consensus 203 V~D~GggT~dvsv~~~~----~~-~~~v~~~---~~~~~lGG~~~d~~l~~~-l~~~~~~----------------~~~~ 257 (650)
-+|+||||||+.|-.+. .+ ...+.-. --+..+.|+||-..+++. ++..+.+ -+|.
T Consensus 570 SIDIGGGTTDL~It~Y~ld~G~g~nv~I~P~q~FReGFkvAGDDiLldVI~~~VlPal~~aL~~aG~~~~~~ll~~LfG~ 649 (1002)
T PF07520_consen 570 SIDIGGGTTDLMITQYRLDDGQGSNVKITPEQLFREGFKVAGDDILLDVIQRIVLPALQQALKKAGVADPRALLSRLFGG 649 (1002)
T ss_pred EEecCCCcceeeEEEEEeccCCcceeEECcchhhhhhcccccHHHHHHHHHHHhHHHHHHHHHHhcccCHHHHHHHHhCC
Confidence 99999999999987765 22 2222111 123678899987666543 3322221 1222
Q ss_pred CCCc-cHH-------------HHHHHHHHHHHHHHHccCCCceEEEEccc---------------------------ccC
Q 043296 258 DISG-NAR-------------ALRRLRTACERAKRTLSSTTQTTIEIDSL---------------------------YEG 296 (650)
Q Consensus 258 ~~~~-~~~-------------~~~~L~~~~e~~K~~ls~~~~~~~~i~~~---------------------------~~~ 296 (650)
+-.. ..+ ...+++.++|..-.. +........+..+ ++-
T Consensus 650 dg~~~~~~~lRqQ~~lQv~~Pi~l~iL~~yE~~d~~-~~~~~~~~~f~ell~~~~Pt~~vl~yi~~~~~~~~~~~~~Fdi 728 (1002)
T PF07520_consen 650 DGQSDQDRVLRQQFTLQVFIPIGLAILKAYENYDPL-DPSAEIDATFGELLEREPPTAAVLDYINEEVRRLPAGAPDFDI 728 (1002)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-ccCccccccHHHhcCCcCCcHHHHHHHHHHHhhcCCCCCCcce
Confidence 2000 000 011233444432210 0000111111111 111
Q ss_pred eeEEEEEcHHHHHHHHH---HHHhHHHHHHHHHHHhcCCCCCCCCeEEEEcCccCcHHHHHHHHhhhCC-----------
Q 043296 297 IDFYATITRARFEELNM---DLFRKCMEPVEKCLRDSKIDKSLVHDIVLVGGSTRIPKVQQLLQDFFNG----------- 362 (650)
Q Consensus 297 ~~~~~~itr~~fe~~~~---~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~----------- 362 (650)
.+..+.|+..++...+- -.+..++..+-+++...+ -|.++|+|--||+|.||..+++..+-
T Consensus 729 ldv~l~i~~~~l~~~~~~~r~~i~~~L~~LcEvv~~Y~-----CDVLLLTGRPSrlPgvqalfr~~~pvPp~RIv~l~~Y 803 (1002)
T PF07520_consen 729 LDVPLEIDLEKLHAAFLSDRMVICKTLRALCEVVHHYD-----CDVLLLTGRPSRLPGVQALFRHLLPVPPDRIVPLHGY 803 (1002)
T ss_pred ecceEEEcHHHHHHHHHhCcccHHHHHHHHHHHHHHhC-----CCEEEEcCCccccHHHHHHHHHhCCCCcccEEecCCe
Confidence 34568899999988774 566677777777776654 56799999999999999999998731
Q ss_pred --------ccccccCCcchhHHhHHHHHHHHHc
Q 043296 363 --------KELCKSINPDEAVAYGAAVQAAILS 387 (650)
Q Consensus 363 --------~~i~~~~~p~~ava~GAa~~a~~~~ 387 (650)
.+-.+-.||-..||.||.+......
T Consensus 804 ~tg~WYPF~~~~rI~dPKTTaaVGAmLc~La~~ 836 (1002)
T PF07520_consen 804 RTGNWYPFNDQGRIDDPKTTAAVGAMLCLLAEG 836 (1002)
T ss_pred eecccccCCCCCcCCCchHHHHHHHHHHHHhcc
Confidence 0112445899999999998765443
No 57
>PRK13317 pantothenate kinase; Provisional
Probab=98.31 E-value=0.00012 Score=73.63 Aligned_cols=48 Identities=23% Similarity=0.272 Sum_probs=42.5
Q ss_pred CCeEEEEc-CccCcHHHHHHHHhhhC--CccccccCCcchhHHhHHHHHHH
Q 043296 337 VHDIVLVG-GSTRIPKVQQLLQDFFN--GKELCKSINPDEAVAYGAAVQAA 384 (650)
Q Consensus 337 i~~V~LvG-G~sr~p~v~~~l~~~f~--~~~i~~~~~p~~ava~GAa~~a~ 384 (650)
++.|+++| |.++.|.+++.+.+.+. +.++..+.+|..+.|+|||+++.
T Consensus 223 ~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 223 IENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 56899999 79999999999998873 56788899999999999999875
No 58
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=98.18 E-value=5.1e-05 Score=73.43 Aligned_cols=191 Identities=19% Similarity=0.187 Sum_probs=102.6
Q ss_pred HHHcCCceeeecchhHHHHHhcccccccCCCCCceEEEEEeCCcceEEEEEEEeCCEEEEEEeeCCCCCChhHHHHHHHH
Q 043296 166 GAIAGLNVMRIINEPTAAAIAYGLDKKASRTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVN 245 (650)
Q Consensus 166 a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~ 245 (650)
-+..|.++..-=.|+.+|.+........ +....++|+||||||.+++.-.+ .+.-+.-.| .|+.++..|..
T Consensus 105 ~~~lgv~V~igGvEAemAi~GALTTPGt----~~PlaIlDmG~GSTDAsii~~~g-~v~~iHlAG----AG~mVTmlI~s 175 (332)
T PF08841_consen 105 EEELGVPVEIGGVEAEMAILGALTTPGT----DKPLAILDMGGGSTDASIINRDG-EVTAIHLAG----AGNMVTMLINS 175 (332)
T ss_dssp HHHHTSEEEEECEHHHHHHHHHTTSTT------SSEEEEEE-SSEEEEEEE-TTS--EEEEEEE-----SHHHHHHHHHH
T ss_pred HHHHCCceEEccccHHHHHhcccCCCCC----CCCeEEEecCCCcccHHHhCCCC-cEEEEEecC----CchhhHHHHHH
Confidence 3556888877788999999887665543 56689999999999999997544 333333332 36666666543
Q ss_pred HHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHccCCCc--eEEEEc---------cccc---------CeeEEEEE--
Q 043296 246 HFVAEFRRKHKKDISGNARALRRLRTACERAKRTLSSTTQ--TTIEID---------SLYE---------GIDFYATI-- 303 (650)
Q Consensus 246 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~--~~~~i~---------~~~~---------~~~~~~~i-- 303 (650)
. .+++. +.-||.+|+.=-..-+ ..+..+ .+.. ..+-.+.|
T Consensus 176 E--------LGl~d----------~~lAE~IKkyPlaKVEslfhiR~EDGtv~Ffd~pl~p~~faRvvi~~~~~lvPi~~ 237 (332)
T PF08841_consen 176 E--------LGLED----------RELAEDIKKYPLAKVESLFHIRHEDGTVQFFDEPLDPDVFARVVILKEDGLVPIPG 237 (332)
T ss_dssp H--------CT-S-----------HHHHHHHHHS-EEEEECTTEEEETTS-EEE-SS---CCCTTSEEEECTTEEEEESS
T ss_pred h--------hCCCC----------HHHHHHhhhcchhhhccceEEEecCCceEEecCCCChHHeeEEEEecCCceeecCC
Confidence 3 23321 3457777774111000 001100 0000 00111222
Q ss_pred --cHHHHHHHHHHHHhH-HHHHHHHHHHhcCC--CCCCCCeEEEEcCccCcHHHHHHHHhhhCC-------ccccccCCc
Q 043296 304 --TRARFEELNMDLFRK-CMEPVEKCLRDSKI--DKSLVHDIVLVGGSTRIPKVQQLLQDFFNG-------KELCKSINP 371 (650)
Q Consensus 304 --tr~~fe~~~~~~~~~-i~~~i~~~l~~~~~--~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~-------~~i~~~~~p 371 (650)
+-+++..+=+..=++ +..-..++|++..- +..+|+.|+||||++.=--|-+++.+.+.. -.+.-..-|
T Consensus 238 ~~~lEkir~vRr~AK~kVFVtNa~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iVaGRgNIrG~eGP 317 (332)
T PF08841_consen 238 DLSLEKIRSVRREAKEKVFVTNALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDALSHYGIVAGRGNIRGVEGP 317 (332)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHHCTTT-EEEE--GGGTSTT
T ss_pred CccHHHHHHHHHHhhhhhhHHHHHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHHhhCcceeeccccccccCc
Confidence 222222221111111 12334455655432 234899999999999887777888777632 245666789
Q ss_pred chhHHhHHHHHH
Q 043296 372 DEAVAYGAAVQA 383 (650)
Q Consensus 372 ~~ava~GAa~~a 383 (650)
..|||.|.++.-
T Consensus 318 RNAVATGLvlsy 329 (332)
T PF08841_consen 318 RNAVATGLVLSY 329 (332)
T ss_dssp STHHHHHHHHHH
T ss_pred hHHHHHHHHHhh
Confidence 999999998753
No 59
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=98.03 E-value=0.0002 Score=73.97 Aligned_cols=209 Identities=20% Similarity=0.253 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeecchhHHHHHhcccccccCCCCCceEEEE
Q 043296 125 SMVLTKMKEIAEAYLGHAVKNAVVTVPAYFNDSQRQATKDAGAIAGLNVMRIINEPTAAAIAYGLDKKASRTGEKNVLIF 204 (650)
Q Consensus 125 ~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~vlV~ 204 (650)
..+.+|+...-.. .......+++|-|..|....|+.+-+..-.. |++-.+.-.- .|.+ |+..+. +=+|+
T Consensus 82 e~iw~~if~~~L~-~~Pee~pvllte~pl~p~~nREk~tqi~FE~-fnvpa~yva~-qavl-ya~g~t-------tG~Vv 150 (372)
T KOG0676|consen 82 EKIWHHLFYSELL-VAPEEHPVLLTEPPLNPKANREKLTQIMFET-FNVPALYVAI-QAVL-YASGRT-------TGLVV 150 (372)
T ss_pred HHHHHHHHHHhhc-cCcccCceEeecCCCCchHhHHHHHHHhhhh-cCccHhHHHH-HHHH-HHcCCe-------eEEEE
Confidence 5666666621111 1122357899999999999999888765332 2332322222 3323 443332 35999
Q ss_pred EeCCcceEEE-EEEEeCCEEEEEEeeCCCCCChhHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHccCC
Q 043296 205 DLGGGTFDVS-LLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVAEFRRKHKKDISGNARALRRLRTACERAKRTLSST 283 (650)
Q Consensus 205 D~GggT~dvs-v~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~ 283 (650)
|+|.|-+++. +++ | +.+........+||++++..+...|.+ .+....... . +.-++.+|+.++..
T Consensus 151 D~G~gvt~~vPI~e---G-~~lp~ai~~ldl~G~dlt~~l~~~L~~-----~g~s~~~~~--~---~eIv~diKeklCyv 216 (372)
T KOG0676|consen 151 DSGDGVTHVVPIYE---G-YALPHAILRLDLAGRDLTDYLLKQLRK-----RGYSFTTSA--E---FEIVRDIKEKLCYV 216 (372)
T ss_pred EcCCCceeeeeccc---c-cccchhhheecccchhhHHHHHHHHHh-----ccccccccc--H---HHHHHHhHhhhccc
Confidence 9999977554 443 2 122233344689999999877666655 121111110 0 11234444444321
Q ss_pred C------------ceEEEEc-ccccCeeEEEEEcHHHH---HHHHHHHH-----hHHHHHHHHHHHhc--CCCCCCCCeE
Q 043296 284 T------------QTTIEID-SLYEGIDFYATITRARF---EELNMDLF-----RKCMEPVEKCLRDS--KIDKSLVHDI 340 (650)
Q Consensus 284 ~------------~~~~~i~-~~~~~~~~~~~itr~~f---e~~~~~~~-----~~i~~~i~~~l~~~--~~~~~~i~~V 340 (650)
. ...+... .+-++.- +.+.-+.| |-+++|-+ ..+-+.+-+.+.++ .+.+.....|
T Consensus 217 ald~~~e~~~~~~~~~l~~~y~lPDg~~--i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd~dlrk~L~~ni 294 (372)
T KOG0676|consen 217 ALDFEEEEETANTSSSLESSYELPDGQK--ITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCDIDLRKDLYENI 294 (372)
T ss_pred ccccchhhhcccccccccccccCCCCCE--EecCCcccccchhcCChhhcCCCCCchhHHHHHHHHhCChhHhHHHHhhe
Confidence 1 0111111 0222222 44444443 23333322 22233333333332 3334456789
Q ss_pred EEEcCccCcHHHHHHHHhhh
Q 043296 341 VLVGGSTRIPKVQQLLQDFF 360 (650)
Q Consensus 341 ~LvGG~sr~p~v~~~l~~~f 360 (650)
+|+||++..|.+.++|.+.+
T Consensus 295 vLsGGtT~~pGl~~Rl~kEl 314 (372)
T KOG0676|consen 295 VLSGGTTMFPGLADRLQKEL 314 (372)
T ss_pred EEeCCcccchhHHHHHHHHH
Confidence 99999999999999988866
No 60
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=97.83 E-value=0.00053 Score=70.59 Aligned_cols=179 Identities=14% Similarity=0.163 Sum_probs=103.4
Q ss_pred eecchhHHHHHhcccccccCCCCCceEEEEEeCCcceEEEEEEEe-CCEEEEEEeeCCCCCChhHHHHHHHHHHHHHHHh
Q 043296 175 RIINEPTAAAIAYGLDKKASRTGEKNVLIFDLGGGTFDVSLLTIE-EGIFEVKATAGDTHLGGEDFDNRLVNHFVAEFRR 253 (650)
Q Consensus 175 ~li~Ep~Aaal~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~-~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~ 253 (650)
.+++|.+|-|....+.. ++.=.|+|+||-.+-+ +.+. ++.+.-.....-+.-|.-.|=+.+++.|
T Consensus 249 ~vitEItcHA~GA~~l~------P~vrTIIDIGGQDsK~--I~ld~~G~V~dF~MNDKCAAGTGrFLE~mA~~L------ 314 (432)
T TIGR02259 249 HIRSEILCHGLGAHLMY------PGTRTVLDIGGQDTKG--IQIDDHGIVENFQMNDRCAAGCGRYLGYIADEM------ 314 (432)
T ss_pred ceeeeHHHHHHHHHHHC------CCCCEEEEeCCCceEE--EEEcCCCcEeeeeecCcccccchHHHHHHHHHc------
Confidence 35688888776553322 2334899999977665 4544 3555444444444455444444444443
Q ss_pred hcCCCCCccHHHHHHHHHHHHHHHHHccCCCceEEEEcccccCeeEEEEEcHHHHHHHHHHHHhHHHHHHHHHHHhcCCC
Q 043296 254 KHKKDISGNARALRRLRTACERAKRTLSSTTQTTIEIDSLYEGIDFYATITRARFEELNMDLFRKCMEPVEKCLRDSKID 333 (650)
Q Consensus 254 ~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~ 333 (650)
+.++ ..|-..+.+.++...-+..+.+..++-.-. -+.--+++ ++++..+...+...+...+.+..
T Consensus 315 --gi~l-------eEl~~lA~~a~~pv~ISS~CtVFAESEVIs-lla~G~~r---eDIaAGL~~SIA~Rv~s~l~r~~-- 379 (432)
T TIGR02259 315 --NMGL-------HELGPLAMKSSKPARINSTCTVFAGAELRD-RLALGDKR---EDILAGLHRAIILRAISIISRSG-- 379 (432)
T ss_pred --CCCH-------HHHHHHHhcCCCCCCcCCcceEEehHHHHH-HHHCCCCH---HHHHHHHHHHHHHHHHHHHhccc--
Confidence 2221 122223444444444444555554421000 00011233 34455555555555555555431
Q ss_pred CCCCCeEEEEcCccCcHHHHHHHHhhhC----CccccccCCcchhHHhHHHHHH
Q 043296 334 KSLVHDIVLVGGSTRIPKVQQLLQDFFN----GKELCKSINPDEAVAYGAAVQA 383 (650)
Q Consensus 334 ~~~i~~V~LvGG~sr~p~v~~~l~~~f~----~~~i~~~~~p~~ava~GAa~~a 383 (650)
..-..|+|+||.++.+.+.+.|++.++ +.++..+.+|+.+-|+|||++|
T Consensus 380 -~i~~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 380 -GITDQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred -CCCCCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 112469999999999999999999994 4678889999999999999975
No 61
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=97.61 E-value=0.0017 Score=62.07 Aligned_cols=221 Identities=21% Similarity=0.262 Sum_probs=132.1
Q ss_pred CcEEEEeCCCCCHHHHHHHHHH-HHHcCCceeeecchhHHHHHhcccccccCCCCCceEEEEEeCCcceEEEEEEEeCCE
Q 043296 144 KNAVVTVPAYFNDSQRQATKDA-GAIAGLNVMRIINEPTAAAIAYGLDKKASRTGEKNVLIFDLGGGTFDVSLLTIEEGI 222 (650)
Q Consensus 144 ~~~VitVPa~~~~~qr~~l~~A-a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~ 222 (650)
..+.+|-|.--....|+.|.+. .+..||..+.+.-...-+.++-++. +=+|+|-|.|-|-+.-+.- +
T Consensus 102 ~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~---------tGvVvDSGDGVTHi~PVye--~- 169 (389)
T KOG0677|consen 102 CKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLL---------TGVVVDSGDGVTHIVPVYE--G- 169 (389)
T ss_pred CeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhccc---------ceEEEecCCCeeEEeeeec--c-
Confidence 4668999999888899988765 5778998777654444443332322 2389999999988775431 1
Q ss_pred EEEEEeeCCCCCChhHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHccCCC-----------ceEEEEc
Q 043296 223 FEVKATAGDTHLGGEDFDNRLVNHFVAEFRRKHKKDISGNARALRRLRTACERAKRTLSSTT-----------QTTIEID 291 (650)
Q Consensus 223 ~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~-----------~~~~~i~ 291 (650)
+..-.-.+...+.|+++++-|.+.+..+ -|...-+.+ ....+..|+.|+--. ++++-++
T Consensus 170 ~~l~HLtrRldvAGRdiTryLi~LLl~r---GYafN~tAD-------FETVR~iKEKLCYisYd~e~e~kLalETTvLv~ 239 (389)
T KOG0677|consen 170 FVLPHLTRRLDVAGRDITRYLIKLLLRR---GYAFNHTAD-------FETVREIKEKLCYISYDLELEQKLALETTVLVE 239 (389)
T ss_pred eehhhhhhhccccchhHHHHHHHHHHhh---ccccccccc-------hHHHHHHHhhheeEeechhhhhHhhhhheeeee
Confidence 1111122345789999999999887543 233222222 233445565554311 1222222
Q ss_pred c--cccCeeEEEEEcHHHHH---HHHHHHH-----hHHHHHHHHHHHhcCCCCC--CCCeEEEEcCccCcHHHHHHHHhh
Q 043296 292 S--LYEGIDFYATITRARFE---ELNMDLF-----RKCMEPVEKCLRDSKIDKS--LVHDIVLVGGSTRIPKVQQLLQDF 359 (650)
Q Consensus 292 ~--~~~~~~~~~~itr~~fe---~~~~~~~-----~~i~~~i~~~l~~~~~~~~--~i~~V~LvGG~sr~p~v~~~l~~~ 359 (650)
+ +.+|. .+.+--+.|| .+++|-+ ..+.+++-.+++.+.++.. --++|+|.||++.-|.+-..|++.
T Consensus 240 ~YtLPDGR--vIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLEkE 317 (389)
T KOG0677|consen 240 SYTLPDGR--VIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLEKE 317 (389)
T ss_pred eeecCCCc--EEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHHHHH
Confidence 1 22332 2455555563 5566543 2455667777777665432 356899999999999998888765
Q ss_pred hC---------C---------ccccccCCcchhHHhHHHHHHHHHcC
Q 043296 360 FN---------G---------KELCKSINPDEAVAYGAAVQAAILSG 388 (650)
Q Consensus 360 f~---------~---------~~i~~~~~p~~ava~GAa~~a~~~~~ 388 (650)
+. + ..+-.++.-...|-+|.|..|.++..
T Consensus 318 lkqlyl~rVL~~d~~~l~KfkiRIEdPPrRKhMVflGGAVLA~imkD 364 (389)
T KOG0677|consen 318 LKQLYLDRVLKGDTDKLKKFKIRIEDPPRRKHMVFLGGAVLAGIMKD 364 (389)
T ss_pred HHHHHHHHHHcCChhhhhheEEeccCCCccceeEEEchHHHHHHhcC
Confidence 41 1 12333344445777888888877653
No 62
>COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]
Probab=97.22 E-value=0.12 Score=56.24 Aligned_cols=83 Identities=18% Similarity=0.246 Sum_probs=52.9
Q ss_pred EEEEcHHHHHHHHHHH---HhHHHHHHHHHHHhcCCCCCCCCeEEEEcCccCcHHHHHHHHhhhCC--------------
Q 043296 300 YATITRARFEELNMDL---FRKCMEPVEKCLRDSKIDKSLVHDIVLVGGSTRIPKVQQLLQDFFNG-------------- 362 (650)
Q Consensus 300 ~~~itr~~fe~~~~~~---~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~-------------- 362 (650)
.+.|.-.++++.+-.. +......+.+++.- -+-|.++|+|--||.|.||..++...+-
T Consensus 744 pl~i~~~ql~e~~ls~~~~i~~~f~al~EaIn~-----y~cDVlLlTGRPsrlPgvqalfr~~~pvp~~rilpl~~Yrvg 818 (1014)
T COG4457 744 PLAIDLSQLHECFLSGDYDITGVFDALCEAINH-----YDCDVLLLTGRPSRLPGVQALFRHLQPVPVNRILPLDDYRVG 818 (1014)
T ss_pred ceeccHHHHHHHHhhCcccccchHHHHHHHHhh-----hcccEEEEcCCcccCccHHHHHhhcCCCCCCceEeccceecc
Confidence 4566666665544332 23333333333332 3457799999999999999999887521
Q ss_pred -----ccccccCCcchhHHhHHHHHHHHHc
Q 043296 363 -----KELCKSINPDEAVAYGAAVQAAILS 387 (650)
Q Consensus 363 -----~~i~~~~~p~~ava~GAa~~a~~~~ 387 (650)
.+-.+-.||...+|.||-+.+..+.
T Consensus 819 ~WYPF~k~grIddPKtTAaVGAMLC~Lsl~ 848 (1014)
T COG4457 819 TWYPFRKQGRIDDPKTTAAVGAMLCALSLE 848 (1014)
T ss_pred ceecccccCcCCCcchHHHHHHHHHHHHhh
Confidence 0123345899999999988876543
No 63
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=97.21 E-value=0.003 Score=66.16 Aligned_cols=152 Identities=16% Similarity=0.173 Sum_probs=101.5
Q ss_pred ceEecHHHHHHHHHHHHHHHHHHHhcCCCC-----cEEEEeCCCCCHHHHHHHHH-HHHHcCCceeeecchhHHHHHhcc
Q 043296 115 EKRFSPEEISSMVLTKMKEIAEAYLGHAVK-----NAVVTVPAYFNDSQRQATKD-AGAIAGLNVMRIINEPTAAAIAYG 188 (650)
Q Consensus 115 ~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~-----~~VitVPa~~~~~qr~~l~~-Aa~~AGl~~~~li~Ep~Aaal~y~ 188 (650)
....|..++++++-+-+.......+..+.+ .+|+-||-.|.....+.+.. .....||....++-|+.||.+..+
T Consensus 194 ~~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaG 273 (618)
T KOG0797|consen 194 PPYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAG 273 (618)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCC
Confidence 345677777777666655555566655443 57999999999888665554 556789999999999999998777
Q ss_pred cccccCCCCCceEEEEEeCCcceEEEEEEEeCCEEEEEEeeCCCCCChhHHHHHHHHHHHHHHHhhcC---CCCCccHHH
Q 043296 189 LDKKASRTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVAEFRRKHK---KDISGNARA 265 (650)
Q Consensus 189 ~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~---~~~~~~~~~ 265 (650)
+.. -.|||+|+-+|.|+.|+ +|.. +..+.--...||.||++.|+-++.+ ..+. .++.. +..
T Consensus 274 lss---------~CVVdiGAQkTsIaCVE--dGvs-~~ntri~L~YGGdDitr~f~~ll~r---s~FPy~d~~v~~-~~d 337 (618)
T KOG0797|consen 274 LSS---------ACVVDIGAQKTSIACVE--DGVS-LPNTRIILPYGGDDITRCFLWLLRR---SGFPYQDCDVLA-PID 337 (618)
T ss_pred ccc---------eeEEEccCcceeEEEee--cCcc-ccCceEEeccCCchHHHHHHHHHHh---cCCCcccccccc-ccc
Confidence 652 48999999999998876 3311 1122222578999999998877654 1221 11211 111
Q ss_pred HHHHHHHHHHHHHHccCCCce
Q 043296 266 LRRLRTACERAKRTLSSTTQT 286 (650)
Q Consensus 266 ~~~L~~~~e~~K~~ls~~~~~ 286 (650)
+--+++.|+.|+.-..+
T Consensus 338 ----~lLl~~LKe~Fc~l~~a 354 (618)
T KOG0797|consen 338 ----WLLLNQLKEKFCHLRAA 354 (618)
T ss_pred ----HHHHHHHHHHhccccHh
Confidence 22456778887765433
No 64
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=97.21 E-value=0.15 Score=51.69 Aligned_cols=71 Identities=23% Similarity=0.322 Sum_probs=49.7
Q ss_pred HHHHHHHhHHHHHHHHHHHhcCCCCCCCCeEEEEcCccCcHHHHHHHHhhh----CCccccccCCcchhHHhHHHHHH
Q 043296 310 ELNMDLFRKCMEPVEKCLRDSKIDKSLVHDIVLVGGSTRIPKVQQLLQDFF----NGKELCKSINPDEAVAYGAAVQA 383 (650)
Q Consensus 310 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f----~~~~i~~~~~p~~ava~GAa~~a 383 (650)
++++...+.+...+...+.+...... .|+|+||..+.+.+++.+.+.+ +..++..+..|....|.||+++|
T Consensus 197 ~Il~~a~~~la~~i~~~~~~~~~~~~---~v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 197 DILAEAADELAELIKAVLKRLGPEKE---PVVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTCCCC---SEEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCC---eEEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 45555556666666666666543322 2999999999977777774444 33455677889999999999986
No 65
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=96.91 E-value=0.033 Score=55.34 Aligned_cols=101 Identities=18% Similarity=0.162 Sum_probs=55.5
Q ss_pred CCcEEEEeCCCCCHHHHHHH-HHHHHHcCCceeeecchhHHHHHhcc---cccccC-CCCCceEEEEEeCCcceEEEEEE
Q 043296 143 VKNAVVTVPAYFNDSQRQAT-KDAGAIAGLNVMRIINEPTAAAIAYG---LDKKAS-RTGEKNVLIFDLGGGTFDVSLLT 217 (650)
Q Consensus 143 ~~~~VitVPa~~~~~qr~~l-~~Aa~~AGl~~~~li~Ep~Aaal~y~---~~~~~~-~~~~~~vlV~D~GggT~dvsv~~ 217 (650)
-.++++|=|.+--++-...+ .-..+.-+|..+ ..-+.|+..++- .+.... .....+.+|+|.|.+-|-+.-+-
T Consensus 93 ~~~ivlTep~~~~psi~~~t~eilFEey~fd~v--~kttaa~lva~~~~~~~ne~~tt~~~~c~lVIDsGysfThIip~v 170 (400)
T KOG0680|consen 93 DHNIVLTEPCMTFPSIQEHTDEILFEEYQFDAV--LKTTAAVLVAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHIIPVV 170 (400)
T ss_pred cceEEEecccccccchhhhHHHHHHHHhccceE--eecCHHHhcchhhhccCCccccccccceEEEEeCCCceEEEehhh
Confidence 35678888876544433333 334455566543 333333333332 111110 13456899999999988776443
Q ss_pred EeCCEEEEEEeeCCCCCChhHHHHHHHHHHH
Q 043296 218 IEEGIFEVKATAGDTHLGGEDFDNRLVNHFV 248 (650)
Q Consensus 218 ~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~ 248 (650)
... ....+.. ...+||..++..|.+.+.
T Consensus 171 ~g~--~~~qaV~-RiDvGGK~LTn~LKE~iS 198 (400)
T KOG0680|consen 171 KGI--PYYQAVK-RIDVGGKALTNLLKETIS 198 (400)
T ss_pred cCc--chhhceE-EeecchHHHHHHHHHHhh
Confidence 221 1111222 257999999998887763
No 66
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=96.91 E-value=0.0019 Score=62.03 Aligned_cols=76 Identities=24% Similarity=0.320 Sum_probs=56.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhcCCC-CCCCCeEEEEcCccCcHHHHHHHHhhhCCccccccCCcchhHHhHHHHHHHH
Q 043296 308 FEELNMDLFRKCMEPVEKCLRDSKID-KSLVHDIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAI 385 (650)
Q Consensus 308 fe~~~~~~~~~i~~~i~~~l~~~~~~-~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~p~~ava~GAa~~a~~ 385 (650)
..+++.-+++.+.-.++..++...-. ...++.|+++||.+++|.+.+++.+.| +.++....+ .++.|.|||+.|+.
T Consensus 120 ~~~~~rAv~Egia~~~~~~~~~l~~~~~~~~~~i~~~GG~~~n~~~~q~~Advl-~~~V~~~~~-~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 120 RADLARAVLEGIAFSLRQILEELEELTGIPIRRIRVSGGGAKNPLWMQILADVL-GRPVVRPEV-EEASALGAALLAAV 196 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCESEEEEESGGGGSHHHHHHHHHHH-TSEEEEESS-STHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHhhhhccccccccceeeEeccccccChHHHHHHHHHh-CCceEeCCC-CchHHHHHHHHHHh
Confidence 45556666666666555555543111 234899999999999999999999999 577766544 89999999999874
No 67
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=96.75 E-value=0.04 Score=58.50 Aligned_cols=84 Identities=15% Similarity=0.104 Sum_probs=49.8
Q ss_pred eEEEEEcHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCeEEEEcCccCcHHHHHHHHh-hhCCccccccCCcchhHH
Q 043296 298 DFYATITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSLVHDIVLVGGSTRIPKVQQLLQD-FFNGKELCKSINPDEAVA 376 (650)
Q Consensus 298 ~~~~~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~-~f~~~~i~~~~~p~~ava 376 (650)
.-.+.||..|++++.. .-..+..-++-+|++++++..+|+.|+|.||++.-=-+.+.+.= .+|.....+..-.-.++-
T Consensus 290 ~~~i~itq~DIr~~ql-AKaAi~aGi~~Ll~~agi~~~di~~v~lAG~FG~~l~~~~a~~iGLlP~~~~~kv~~~GN~al 368 (412)
T PF14574_consen 290 GDDIYITQKDIREFQL-AKAAIRAGIEILLEEAGISPEDIDRVYLAGGFGNYLDPESAIRIGLLPDVPAEKVRFVGNAAL 368 (412)
T ss_dssp SS-EEEEHHHHHHHHH-HHHHHHHHHHHHHHHTT--GGG--EEEEECSS-SEEEHHHHHHTTSS--S-GGGEEEEC-HHH
T ss_pred CCCEEEeHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHccEEEEeCcccccCCHHHHhhcCCCCCccccCEEEECcHHH
Confidence 3457899999987632 23345566778899999999999999999999988777777753 333222111112233556
Q ss_pred hHHHHH
Q 043296 377 YGAAVQ 382 (650)
Q Consensus 377 ~GAa~~ 382 (650)
.||.+.
T Consensus 369 ~GA~~~ 374 (412)
T PF14574_consen 369 AGARMA 374 (412)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 676654
No 68
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=96.65 E-value=0.016 Score=61.50 Aligned_cols=88 Identities=23% Similarity=0.264 Sum_probs=54.6
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCceeee---cchhHHHHHhcccccccCCCCCceEEEEEeCCcceEEEEEEEeCCE
Q 043296 146 AVVTVPAYFNDSQRQATKDAGAIAGLNVMRI---INEPTAAAIAYGLDKKASRTGEKNVLIFDLGGGTFDVSLLTIEEGI 222 (650)
Q Consensus 146 ~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~l---i~Ep~Aaal~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~ 222 (650)
++||==+--.+++|..+...+..||==++.- -.|..-|+-..+..... ......|+=+|+||||+.+++++-..
T Consensus 88 VIITGETArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~S-~~~~~~V~NiDIGGGTtN~avf~~G~-- 164 (473)
T PF06277_consen 88 VIITGETARKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAALS-KEHHTVVANIDIGGGTTNIAVFDNGE-- 164 (473)
T ss_pred EEEecchhhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHHh-hhhCCeEEEEEeCCCceeEEEEECCE--
Confidence 4666666667778888888888887322211 13444443333222111 12467889999999999999998433
Q ss_pred EEEEEeeCCCCCChhHH
Q 043296 223 FEVKATAGDTHLGGEDF 239 (650)
Q Consensus 223 ~~v~~~~~~~~lGG~~~ 239 (650)
++.+.. .++||+.|
T Consensus 165 --v~~T~c-l~IGGRLi 178 (473)
T PF06277_consen 165 --VIDTAC-LDIGGRLI 178 (473)
T ss_pred --EEEEEE-EeeccEEE
Confidence 244443 68899765
No 69
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=96.12 E-value=0.018 Score=64.45 Aligned_cols=85 Identities=19% Similarity=0.203 Sum_probs=64.8
Q ss_pred EEcHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCeEEEEcCccCcHHHHHHHHhhhCCccccccCCcchhHHhHHHH
Q 043296 302 TITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSLVHDIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAV 381 (650)
Q Consensus 302 ~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~p~~ava~GAa~ 381 (650)
.-+|.++.++++.+++.+.-.++..++...-....++.|.++||.++++...+.+.+.+ +.++.+..+ .++.++|||+
T Consensus 409 ~~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~~-~e~~alGaA~ 486 (541)
T TIGR01315 409 DRSKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQNPLLMQLIADAC-DMPVLIPYV-NEAVLHGAAM 486 (541)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecCcccCHHHHHHHHHHH-CCeeEecCh-hHHHHHHHHH
Confidence 44677778888888888876666655543211234788999999999999999999999 688876654 5688999999
Q ss_pred HHHHHcC
Q 043296 382 QAAILSG 388 (650)
Q Consensus 382 ~a~~~~~ 388 (650)
.|+.-.|
T Consensus 487 lA~~~~G 493 (541)
T TIGR01315 487 LGAKAAG 493 (541)
T ss_pred HHHHhcC
Confidence 9986554
No 70
>PRK15027 xylulokinase; Provisional
Probab=96.09 E-value=0.017 Score=63.89 Aligned_cols=78 Identities=22% Similarity=0.261 Sum_probs=56.3
Q ss_pred cHHHHHHHHHHHHhHHHHHHHH---HHHhcCCCCCCCCeEEEEcCccCcHHHHHHHHhhhCCccccccCCcchhHHhHHH
Q 043296 304 TRARFEELNMDLFRKCMEPVEK---CLRDSKIDKSLVHDIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAA 380 (650)
Q Consensus 304 tr~~fe~~~~~~~~~i~~~i~~---~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~p~~ava~GAa 380 (650)
+|.+| ++.+++.+.-.++. .+++.+. .++.|+++||+++++...+++.+.+ +.++....+.+++.|+|||
T Consensus 357 ~~~~l---~rAvlEgia~~~~~~~~~l~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~-g~pv~~~~~~~~~~a~GaA 429 (484)
T PRK15027 357 GPNEL---ARAVLEGVGYALADGMDVVHACGI---KPQSVTLIGGGARSEYWRQMLADIS-GQQLDYRTGGDVGPALGAA 429 (484)
T ss_pred CHHHH---HHHHHHHHHHHHHHHHHHHHHcCC---CccEEEEeCcccCCHHHHHHHHHHh-CCeEEeecCCCcchHHHHH
Confidence 45544 44444444433333 3443332 4788999999999999999999999 6888666667778999999
Q ss_pred HHHHHHcC
Q 043296 381 VQAAILSG 388 (650)
Q Consensus 381 ~~a~~~~~ 388 (650)
+.|+.-.|
T Consensus 430 ~lA~~~~G 437 (484)
T PRK15027 430 RLAQIAAN 437 (484)
T ss_pred HHHHHhcC
Confidence 99986654
No 71
>PLN02669 xylulokinase
Probab=96.07 E-value=0.02 Score=64.12 Aligned_cols=72 Identities=17% Similarity=0.264 Sum_probs=53.8
Q ss_pred HHHHHHhHHHHHHHHHHHhcCCCCCCCCeEEEEcCccCcHHHHHHHHhhhCCccccccCCcchhHHhHHHHHHHH
Q 043296 311 LNMDLFRKCMEPVEKCLRDSKIDKSLVHDIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAI 385 (650)
Q Consensus 311 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~p~~ava~GAa~~a~~ 385 (650)
+++.+++.+.-.++..++..+.. ..++.|+++||+|+++.+.+.+.+.| +.+|.+...+ ++.|+|||+.|+.
T Consensus 421 ~~RAvlEg~a~~~r~~~~~l~~~-~~~~~i~~~GGgs~s~~w~Qi~ADVl-g~pV~~~~~~-ea~alGAA~~A~~ 492 (556)
T PLN02669 421 EVRAIIEGQFLSMRAHAERFGMP-VPPKRIIATGGASANQSILKLIASIF-GCDVYTVQRP-DSASLGAALRAAH 492 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-CCCcEEEEEcChhcCHHHHHHHHHHc-CCCeEecCCC-CchHHHHHHHHHH
Confidence 45555666555555555544332 35789999999999999999999999 5677665444 7889999999975
No 72
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=95.65 E-value=0.22 Score=55.04 Aligned_cols=77 Identities=21% Similarity=0.318 Sum_probs=46.8
Q ss_pred HHHHHHHHHHcCCceeeecchhHHHHHhc-ccccccCCCCCceEEEEEeCCcceEEEEEEEeCCEEEEEEeeCCCCCChh
Q 043296 159 RQATKDAGAIAGLNVMRIINEPTAAAIAY-GLDKKASRTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGE 237 (650)
Q Consensus 159 r~~l~~Aa~~AGl~~~~li~Ep~Aaal~y-~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~ 237 (650)
...+.++-+..|+++ ++++..+=|-+.| +...... ..+..+|+|+|||+|.+++++ ++.+. .....++|.-
T Consensus 94 ~~fl~~i~~~tGl~i-evIsG~eEA~l~~~gv~~~l~--~~~~~lviDIGGGStEl~~~~--~~~~~---~~~Sl~lG~v 165 (496)
T PRK11031 94 DEFLAKAQEILGCPV-QVISGEEEARLIYQGVAHTTG--GADQRLVVDIGGASTELVTGT--GAQAT---SLFSLSMGCV 165 (496)
T ss_pred HHHHHHHHHHHCCCe-EEeCHHHHHHHHHHhhhhccC--CCCCEEEEEecCCeeeEEEec--CCcee---eeeEEeccch
Confidence 444455566779987 5555554444444 4443321 234689999999999999886 33222 1223578877
Q ss_pred HHHHHH
Q 043296 238 DFDNRL 243 (650)
Q Consensus 238 ~~d~~l 243 (650)
.+.+.+
T Consensus 166 rl~e~f 171 (496)
T PRK11031 166 TWLERY 171 (496)
T ss_pred HHHHHh
Confidence 766554
No 73
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=95.54 E-value=0.15 Score=54.76 Aligned_cols=181 Identities=19% Similarity=0.196 Sum_probs=104.3
Q ss_pred eEEEEEeCCcceEEEEEEEeC-------CEEEEEEeeCCCCCChhHHHHHHHHHHHHHHH---------hhcCCCCCccH
Q 043296 200 NVLIFDLGGGTFDVSLLTIEE-------GIFEVKATAGDTHLGGEDFDNRLVNHFVAEFR---------RKHKKDISGNA 263 (650)
Q Consensus 200 ~vlV~D~GggT~dvsv~~~~~-------~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~---------~~~~~~~~~~~ 263 (650)
+-|++=+|-+|+++.+-+-.. .....+....-..=||..-.=.|.+||.+... .+++.++ ..
T Consensus 269 ~~l~~I~GTStC~m~~s~~~~~v~GvwGpy~~ai~Pg~~~~EgGQSatG~l~dhl~~~h~~~~e~~~~~~~~~~~~--~~ 346 (544)
T COG1069 269 GSLAMIAGTSTCHMLLSEKPRFVPGVWGPYDGAVLPGLWLYEGGQSATGDLLDHLVRTHPAPLEQLAAHPKDGEEI--YE 346 (544)
T ss_pred CeEEEEeccceEEEEecCCceecCccccccccccCcchhhhcccchhhhHHHHHHHHhCCcccchhhccchhhhHH--HH
Confidence 446666788888887665321 11122222222334777777778888766521 1111111 11
Q ss_pred HHHHHHHHHHHHHHHHccCCCceEEEEccccc------Ce-------eEEEEEcHHHHHHHHHHHHhHHH---HHHHHHH
Q 043296 264 RALRRLRTACERAKRTLSSTTQTTIEIDSLYE------GI-------DFYATITRARFEELNMDLFRKCM---EPVEKCL 327 (650)
Q Consensus 264 ~~~~~L~~~~e~~K~~ls~~~~~~~~i~~~~~------~~-------~~~~~itr~~fe~~~~~~~~~i~---~~i~~~l 327 (650)
....++..-+++.+...+.... .+-++.+.. +. .+++.-+.+.+-.+....+.-+. +.|-+++
T Consensus 347 ~~~~~~~~l~~~~~~~~~l~~~-l~~l~~f~GNRsP~aDp~l~G~i~GltL~T~~~~l~~lY~a~l~a~A~GtR~Iie~~ 425 (544)
T COG1069 347 SLAQRLELLTEAAAAIPPLASG-LHVLDWFNGNRSPLADPRLKGVITGLTLDTSPESLALLYRALLEATAFGTRAIIETF 425 (544)
T ss_pred HHHHHHHHHHhhHhccCcccCC-cEecccccCCcCCCCCccceeEEeccccCCCcHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 2334444445666655543321 122222211 11 12334455555556555555554 3444555
Q ss_pred HhcCCCCCCCCeEEEEcCccCcHHHHHHHHhhhCCccccccCCcchhHHhHHHHHHHHHcC
Q 043296 328 RDSKIDKSLVHDIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSG 388 (650)
Q Consensus 328 ~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~p~~ava~GAa~~a~~~~~ 388 (650)
++.+ ..|+.|+.+||-.+.|.+.+.+.... +.++..+ ..++++++|+|+.++.-.|
T Consensus 426 ~~~g---~~Id~l~~sGG~~KN~llmql~aDvt-g~~v~i~-~s~~a~llGsAm~~avAag 481 (544)
T COG1069 426 EDQG---IAIDTLFASGGIRKNPLLMQLYADVT-GRPVVIP-ASDQAVLLGAAMFAAVAAG 481 (544)
T ss_pred HHcC---CeeeEEEecCCcccCHHHHHHHHHhc-CCeEEee-cccchhhhHHHHHHHHHhc
Confidence 5555 45899999999999999999999999 5666655 6788999999999986553
No 74
>PRK10854 exopolyphosphatase; Provisional
Probab=95.36 E-value=0.2 Score=55.63 Aligned_cols=76 Identities=18% Similarity=0.312 Sum_probs=45.2
Q ss_pred HHHHHHHHHcCCceeeecchhHHHHHhc-ccccccCCCCCceEEEEEeCCcceEEEEEEEeCCEEEEEEeeCCCCCChhH
Q 043296 160 QATKDAGAIAGLNVMRIINEPTAAAIAY-GLDKKASRTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGED 238 (650)
Q Consensus 160 ~~l~~Aa~~AGl~~~~li~Ep~Aaal~y-~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~ 238 (650)
..+.++-...|+++ .+++..+=|.+.| +...... ..+..+|+|+|||+|.+++++-.. +....+ .++|.-.
T Consensus 100 ~fl~~i~~~tGl~i-~vIsG~EEA~l~~~gv~~~l~--~~~~~lvvDIGGGStEl~~~~~~~--~~~~~S---~~lG~vr 171 (513)
T PRK10854 100 DFLKRAEKVIPYPI-EIISGNEEARLIFMGVEHTQP--EKGRKLVIDIGGGSTELVIGENFE--PILVES---RRMGCVS 171 (513)
T ss_pred HHHHHHHHHHCCCe-EEeCHHHHHHHHHhhhhcccC--CCCCeEEEEeCCCeEEEEEecCCC--eeEeEE---Eecceee
Confidence 34444556679987 5555555444444 4443321 235689999999999999987332 222222 2666666
Q ss_pred HHHHH
Q 043296 239 FDNRL 243 (650)
Q Consensus 239 ~d~~l 243 (650)
+.+.+
T Consensus 172 l~e~f 176 (513)
T PRK10854 172 FAQLY 176 (513)
T ss_pred HHhhh
Confidence 65544
No 75
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=95.36 E-value=0.049 Score=60.16 Aligned_cols=78 Identities=26% Similarity=0.377 Sum_probs=54.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHhcC-CCCCCCCeEEEEcCccCcHHHHHHHHhhhCCccccccCCcchhHHhHHHHHHHHHc
Q 043296 309 EELNMDLFRKCMEPVEKCLRDSK-IDKSLVHDIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILS 387 (650)
Q Consensus 309 e~~~~~~~~~i~~~i~~~l~~~~-~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~p~~ava~GAa~~a~~~~ 387 (650)
+++++.+++.+.-.++..++... .....++.|+++||.++++.+.+++.+.| +.++... ...++.++|||+.|+.-.
T Consensus 362 ~~l~railEgia~~~~~~~~~l~~~~~~~~~~i~~~GG~s~s~~~~Q~~Adv~-g~pv~~~-~~~e~~a~GaA~~a~~~~ 439 (481)
T TIGR01312 362 ADLTRAVLEGVTFALRDSLDILREAGGIPIQSIRLIGGGAKSPAWRQMLADIF-GTPVDVP-EGEEGPALGAAILAAWAL 439 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeccccCCHHHHHHHHHHh-CCceeec-CCCcchHHHHHHHHHHhc
Confidence 34444555555444444333221 11124789999999999999999999999 5777665 466789999999998765
Q ss_pred C
Q 043296 388 G 388 (650)
Q Consensus 388 ~ 388 (650)
|
T Consensus 440 g 440 (481)
T TIGR01312 440 G 440 (481)
T ss_pred C
Confidence 4
No 76
>PRK04123 ribulokinase; Provisional
Probab=95.34 E-value=0.043 Score=61.63 Aligned_cols=77 Identities=19% Similarity=0.288 Sum_probs=54.0
Q ss_pred HHHHHHHhHHHHHHHHHHHhcCCCCCCCCeEEEEcCc-cCcHHHHHHHHhhhCCccccccCCcchhHHhHHHHHHHHHcC
Q 043296 310 ELNMDLFRKCMEPVEKCLRDSKIDKSLVHDIVLVGGS-TRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSG 388 (650)
Q Consensus 310 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~-sr~p~v~~~l~~~f~~~~i~~~~~p~~ava~GAa~~a~~~~~ 388 (650)
++++.+++.+.-.+...++...-....++.|.++||+ ++++.+.+.+.+.| +.+|.+. ...++.|+|||+.|+.-.|
T Consensus 412 ~l~RAvlEgia~~~~~~~e~l~~~g~~~~~i~~~GGg~s~s~~w~Qi~ADv~-g~pV~~~-~~~e~~alGaA~lA~~~~G 489 (548)
T PRK04123 412 DIYRALIEATAFGTRAIMECFEDQGVPVEEVIAAGGIARKNPVLMQIYADVL-NRPIQVV-ASDQCPALGAAIFAAVAAG 489 (548)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCcccCHHHHHHHHHhc-CCceEec-CccccchHHHHHHHHHHhc
Confidence 3455556555544444333221112247889999999 99999999999999 5777555 4567889999999986554
No 77
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=95.33 E-value=3.4 Score=42.79 Aligned_cols=45 Identities=24% Similarity=0.381 Sum_probs=30.0
Q ss_pred HcCCceeeecchhHHHHHhcccccccCCCCCceEEEEEeCCcceEEEEE
Q 043296 168 IAGLNVMRIINEPTAAAIAYGLDKKASRTGEKNVLIFDLGGGTFDVSLL 216 (650)
Q Consensus 168 ~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~ 216 (650)
..|++ +.+.|+..|+|++-.+.... ...++++++.+|.|- -.+++
T Consensus 96 ~~~~p-v~v~NDa~~~alaE~~~g~~--~~~~~~~~v~igtGi-G~giv 140 (318)
T TIGR00744 96 RVGLP-VVVENDANAAALGEYKKGAG--KGARDVICITLGTGL-GGGII 140 (318)
T ss_pred HHCCC-EEEechHHHHHHHHHHhccc--CCCCcEEEEEeCCcc-EEEEE
Confidence 44665 57999999998875443221 235678999999875 55554
No 78
>PRK00047 glpK glycerol kinase; Provisional
Probab=95.29 E-value=0.051 Score=60.28 Aligned_cols=78 Identities=18% Similarity=0.193 Sum_probs=55.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHhcC-CCCCCCCeEEEEcCccCcHHHHHHHHhhhCCccccccCCcchhHHhHHHHHHHHHc
Q 043296 309 EELNMDLFRKCMEPVEKCLRDSK-IDKSLVHDIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILS 387 (650)
Q Consensus 309 e~~~~~~~~~i~~~i~~~l~~~~-~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~p~~ava~GAa~~a~~~~ 387 (650)
.++++.+++.+.-.++..++... .....++.|.++||.+++|.+.+++.+.| +.+|... +..++.|+|||+.|+.-.
T Consensus 375 ~~l~rAvlEgia~~~r~~~e~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~-~~~e~~a~GaA~~A~~~~ 452 (498)
T PRK00047 375 EHIIRATLESIAYQTRDVLDAMQADSGIRLKELRVDGGAVANNFLMQFQADIL-GVPVERP-VVAETTALGAAYLAGLAV 452 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecCcccCHHHHHHHHHhh-CCeeEec-CcccchHHHHHHHHhhhc
Confidence 34455556655544444443322 11124788999999999999999999999 5777654 455788999999998655
Q ss_pred C
Q 043296 388 G 388 (650)
Q Consensus 388 ~ 388 (650)
|
T Consensus 453 G 453 (498)
T PRK00047 453 G 453 (498)
T ss_pred C
Confidence 4
No 79
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=95.29 E-value=0.045 Score=60.14 Aligned_cols=76 Identities=14% Similarity=0.166 Sum_probs=54.8
Q ss_pred HHHHHHHHhHHHHHHHHH---HHhcCCCCCCCCeEEEEcCccCcHHHHHHHHhhhCCccccccCCcchhHHhHHHHHHHH
Q 043296 309 EELNMDLFRKCMEPVEKC---LRDSKIDKSLVHDIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAI 385 (650)
Q Consensus 309 e~~~~~~~~~i~~~i~~~---l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~p~~ava~GAa~~a~~ 385 (650)
.++++.+++.+.-.++.. +++.+ ...++.|.++||++++|.+.+.+.+.| +.++.+..+ .++.++|||+.|+.
T Consensus 365 ~~l~rAvlEgia~~~r~~~e~l~~~~--~~~~~~i~~~GGga~s~~w~Qi~Adv~-g~pV~~~~~-~e~~~lGaA~~a~~ 440 (465)
T TIGR02628 365 GHIYRAALEGLTAQLKRNLQMLEQIG--QFKASELLLVGGGSKNTLWNQIRANML-DIPVKVVDD-AETTVAGAAMFGFY 440 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc--CCCcceEEEecCccCCHHHHHHhhhhc-CCeeEeccC-CcchHHHHHHHHHH
Confidence 345555566555444443 33332 124788999999999999999999999 678866554 57889999999986
Q ss_pred HcC
Q 043296 386 LSG 388 (650)
Q Consensus 386 ~~~ 388 (650)
-.|
T Consensus 441 a~G 443 (465)
T TIGR02628 441 GVG 443 (465)
T ss_pred hcC
Confidence 654
No 80
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=95.26 E-value=0.046 Score=60.52 Aligned_cols=78 Identities=18% Similarity=0.215 Sum_probs=54.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHhcC-CCCCCCCeEEEEcCccCcHHHHHHHHhhhCCccccccCCcchhHHhHHHHHHHHHc
Q 043296 309 EELNMDLFRKCMEPVEKCLRDSK-IDKSLVHDIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILS 387 (650)
Q Consensus 309 e~~~~~~~~~i~~~i~~~l~~~~-~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~p~~ava~GAa~~a~~~~ 387 (650)
.+++..+++.+.-.++..++... .....++.|.++||.++++...+++.+.| +.++... +..++.|+|||+.|+.-.
T Consensus 371 ~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADv~-g~pv~~~-~~~e~~alGaA~~a~~~~ 448 (493)
T TIGR01311 371 AHIARAALEAIAFQTRDVLEAMEKDAGVEITKLRVDGGMTNNNLLMQFQADIL-GVPVVRP-KVTETTALGAAYAAGLAV 448 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecccccCHHHHHHHHHhc-CCeeEec-CCCcchHHHHHHHHHhhc
Confidence 33444555555444444443321 11224788999999999999999999999 6777654 456788999999998655
Q ss_pred C
Q 043296 388 G 388 (650)
Q Consensus 388 ~ 388 (650)
|
T Consensus 449 G 449 (493)
T TIGR01311 449 G 449 (493)
T ss_pred C
Confidence 4
No 81
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=95.23 E-value=0.056 Score=60.01 Aligned_cols=77 Identities=18% Similarity=0.236 Sum_probs=54.3
Q ss_pred HHHHHHHhHHHHHHHHHHHhcCC-CCCCCCeEEEEcCccCcHHHHHHHHhhhCCccccccCCcchhHHhHHHHHHHHHcC
Q 043296 310 ELNMDLFRKCMEPVEKCLRDSKI-DKSLVHDIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSG 388 (650)
Q Consensus 310 ~~~~~~~~~i~~~i~~~l~~~~~-~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~p~~ava~GAa~~a~~~~~ 388 (650)
+++..+++.+.-.++..++...- ....++.|.++||.++++.+.+++.+.| +.++.... ..++.|+|||+.|+.-.|
T Consensus 379 ~i~rAvlEgia~~~r~~~~~l~~~~g~~~~~i~~~GG~a~s~~w~Qi~Adv~-g~pV~~~~-~~e~~alGaAl~aa~a~G 456 (504)
T PTZ00294 379 HIVRAALEAIALQTNDVIESMEKDAGIELNSLRVDGGLTKNKLLMQFQADIL-GKDIVVPE-MAETTALGAALLAGLAVG 456 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCcceEEEecccccCHHHHHHHHHHh-CCceEecC-cccchHHHHHHHHHhhcC
Confidence 34555555555444444433211 0123788999999999999999999999 67776554 556889999999987654
No 82
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=95.18 E-value=0.058 Score=60.41 Aligned_cols=76 Identities=24% Similarity=0.279 Sum_probs=53.5
Q ss_pred HHHHHHhHHHHHHHHHHHhcCCCCCCCCeEEEEcCc-cCcHHHHHHHHhhhCCccccccCCcchhHHhHHHHHHHHHcC
Q 043296 311 LNMDLFRKCMEPVEKCLRDSKIDKSLVHDIVLVGGS-TRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSG 388 (650)
Q Consensus 311 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~-sr~p~v~~~l~~~f~~~~i~~~~~p~~ava~GAa~~a~~~~~ 388 (650)
+++.+++.+.-.++..++........++.|+++||. ++++.+.+.+.+.| +.+|.+..+ .++.|+|||+.|+.-.|
T Consensus 410 ~~RAvlEgia~~~~~~l~~l~~~g~~~~~i~~~GGg~a~s~~w~Qi~Adv~-g~pV~~~~~-~e~~a~GaA~lA~~~~G 486 (536)
T TIGR01234 410 LYRALIEATAFGTRMIMETFTDSGVPVEELMAAGGIARKNPVIMQIYADVT-NRPLQIVAS-DQAPALGAAIFAAVAAG 486 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeCCccccCHHHHHHHHHhh-CCeeEeccC-CcchhHHHHHHHHHHcC
Confidence 444555555444333333221112347899999999 99999999999999 688866655 46889999999987664
No 83
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=95.17 E-value=0.071 Score=57.54 Aligned_cols=79 Identities=24% Similarity=0.334 Sum_probs=59.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHhcCCCC-CCCCeEEEEcCccCcHHHHHHHHhhhCCccccccCCcchhHHhHHHHHHHHHc
Q 043296 309 EELNMDLFRKCMEPVEKCLRDSKIDK-SLVHDIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILS 387 (650)
Q Consensus 309 e~~~~~~~~~i~~~i~~~l~~~~~~~-~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~p~~ava~GAa~~a~~~~ 387 (650)
+.+....++.+.-.++..|+....+. ..|+.+.+.||.|+.|.+.+.+.+.+ +.++.++.+.+. ++.|||+.|+..+
T Consensus 386 ~hia~A~leai~fqtr~Il~am~~~~~~~i~~L~~~GG~s~N~ll~Q~~ADi~-g~pv~~p~~~e~-~~~GaA~l~~~a~ 463 (516)
T KOG2517|consen 386 EHLARAALEAIAFQTREILEAMERDGGHPISTLRVCGGLSKNPLLMQLQADIL-GLPVVRPQDVEA-VALGAAMLAGAAS 463 (516)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeccccccCHHHHHHHHHHh-CCccccccchhH-HHHHHHHHHHhhc
Confidence 34444555555544444444333332 56888999999999999999999999 589999888877 9999999999887
Q ss_pred CC
Q 043296 388 GE 389 (650)
Q Consensus 388 ~~ 389 (650)
+.
T Consensus 464 ~~ 465 (516)
T KOG2517|consen 464 GK 465 (516)
T ss_pred CC
Confidence 54
No 84
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=95.10 E-value=0.036 Score=56.61 Aligned_cols=69 Identities=17% Similarity=0.127 Sum_probs=11.6
Q ss_pred HHHHHHhHHHHHHHHHHHhcCCCCCCCCeEEEEcCccCcHHHHHHHHhhhCCccccccCCcchhHHhHHHHH
Q 043296 311 LNMDLFRKCMEPVEKCLRDSKIDKSLVHDIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQ 382 (650)
Q Consensus 311 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~p~~ava~GAa~~ 382 (650)
+++-..+++.+.|++.....+..+.+. .++.+||.+ |++...|.+.++-..+..+..+.-+-|.||++-
T Consensus 216 i~~~~~~~m~~~i~~~~~~~g~~~~~~-~lv~~GG~g--~~~~~~la~~lg~~~v~~p~~~~v~~A~Ga~~a 284 (290)
T PF01968_consen 216 IVRIANENMADAIREVSVERGYDPRDF-PLVAFGGAG--PLHAPELAEELGIPRVVPPHYAGVANAIGAAVA 284 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT--EEEE---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCcccc-ccccccccc--ccccccccccccccccccccccccccccccccc
Confidence 333444455555555544445544332 345556665 778888888885445666666788999999863
No 85
>PRK10331 L-fuculokinase; Provisional
Probab=95.09 E-value=0.058 Score=59.38 Aligned_cols=77 Identities=17% Similarity=0.166 Sum_probs=54.5
Q ss_pred HHHHHHHhHHHHHHHHHHHhcC-CCCCCCCeEEEEcCccCcHHHHHHHHhhhCCccccccCCcchhHHhHHHHHHHHHcC
Q 043296 310 ELNMDLFRKCMEPVEKCLRDSK-IDKSLVHDIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSG 388 (650)
Q Consensus 310 ~~~~~~~~~i~~~i~~~l~~~~-~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~p~~ava~GAa~~a~~~~~ 388 (650)
++.+.+++.+.-.++..++... .....++.|.++||++++|...+++.+.| +.++.... ..++.++|||+.|+.-.|
T Consensus 362 ~l~rAvlEgia~~~~~~~~~l~~~~~~~~~~i~~~GGga~s~~w~Qi~Advl-g~pV~~~~-~~e~~a~GaA~la~~~~G 439 (470)
T PRK10331 362 HFYRAALEGLTAQLKRNLQVLEKIGHFKASELLLVGGGSRNALWNQIKANML-DIPIKVLD-DAETTVAGAAMFGWYGVG 439 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEcccccCHHHHHHHHHhc-CCeeEecC-cccchHHHHHHHHHHhcC
Confidence 3455555555544444444321 11224789999999999999999999999 67776554 457889999999986554
No 86
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=94.95 E-value=0.056 Score=47.24 Aligned_cols=47 Identities=13% Similarity=0.317 Sum_probs=27.7
Q ss_pred EEEEEeCCcceEEEEEEEe-CCEEEEEEeeCCCC--CChhHHH--HHHHHHH
Q 043296 201 VLIFDLGGGTFDVSLLTIE-EGIFEVKATAGDTH--LGGEDFD--NRLVNHF 247 (650)
Q Consensus 201 vlV~D~GggT~dvsv~~~~-~~~~~v~~~~~~~~--lGG~~~d--~~l~~~l 247 (650)
|+++|+|++++.+.+++.. .+.++++....... +=+..+. +.+.+.+
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i 52 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDGYIRVLGVGEVPSKGIKGGHITDIEDISKAI 52 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEEEEEEES----------HHHHH--HHHHHHH
T ss_pred CEEEEcCCCcEEEEEEEeCCCCcEEEEEEecccccccCCCEEEEHHHHHHHH
Confidence 6899999999999999973 34455543321111 1177777 6666554
No 87
>PRK09698 D-allose kinase; Provisional
Probab=94.92 E-value=5.2 Score=41.04 Aligned_cols=49 Identities=22% Similarity=0.264 Sum_probs=31.8
Q ss_pred CCCeEEEEcCccCc-----HHHHHHHHhhhC------CccccccCCcchhHHhHHHHHHH
Q 043296 336 LVHDIVLVGGSTRI-----PKVQQLLQDFFN------GKELCKSINPDEAVAYGAAVQAA 384 (650)
Q Consensus 336 ~i~~V~LvGG~sr~-----p~v~~~l~~~f~------~~~i~~~~~p~~ava~GAa~~a~ 384 (650)
+++.|+|-||.+.. +.+++.+++..- ..++......+.+.++|||+.+.
T Consensus 236 dP~~IvlgG~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~~~~ 295 (302)
T PRK09698 236 DPDAIILGGGVMDMPAFPRETLIAMIQKYLRKPLPYEVVRFIYASSSDFNGAQGAAILAH 295 (302)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHHHHccCccccCCcEEEECCcCCcccHHhHHHHHH
Confidence 46788888887764 345666665431 12344555567788999998865
No 88
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=94.80 E-value=0.07 Score=58.41 Aligned_cols=79 Identities=18% Similarity=0.214 Sum_probs=53.5
Q ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHhcC-CCCCCCCeEEEEcCccCcHHHHHHHHhhhCCccccccCCcchhHHhHHHHH
Q 043296 304 TRARFEELNMDLFRKCMEPVEKCLRDSK-IDKSLVHDIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQ 382 (650)
Q Consensus 304 tr~~fe~~~~~~~~~i~~~i~~~l~~~~-~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~p~~ava~GAa~~ 382 (650)
+|.++ ++.+++.+.-.++..++... .....++.|.++||+++++...+.+.+.+ +.++... +.++.|+|||+.
T Consensus 357 ~~~~l---~RAv~Egva~~~r~~~e~l~~~~~~~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~--~~e~~a~GaA~~ 430 (454)
T TIGR02627 357 SDAEL---ARCIFDSLALLYRQVLLELAELRGKPISQLHIVGGGSQNAFLNQLCADAC-GIRVIAG--PVEASTLGNIGV 430 (454)
T ss_pred CHHHH---HHHHHHHHHHHHHHHHHHHHHhhCCCcCEEEEECChhhhHHHHHHHHHHh-CCceEcC--CchHHHHHHHHH
Confidence 45444 44445544433333333221 01124788999999999999999999999 6788543 367899999999
Q ss_pred HHHHcC
Q 043296 383 AAILSG 388 (650)
Q Consensus 383 a~~~~~ 388 (650)
|+.-.|
T Consensus 431 a~~~~G 436 (454)
T TIGR02627 431 QLMALD 436 (454)
T ss_pred HHHhcC
Confidence 987654
No 89
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=94.80 E-value=0.08 Score=58.85 Aligned_cols=75 Identities=16% Similarity=0.168 Sum_probs=53.8
Q ss_pred HHHHHHHHhHHHHHHHHHH----HhcCCCCCCCCeEEEEcCccCcHHHHHHHHhhhCCccccccCCcchhHHhHHHHHHH
Q 043296 309 EELNMDLFRKCMEPVEKCL----RDSKIDKSLVHDIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAA 384 (650)
Q Consensus 309 e~~~~~~~~~i~~~i~~~l----~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~p~~ava~GAa~~a~ 384 (650)
.+++..+++.+.-.+...+ +..+ ..++.|.++||.++++...+++.+.| +.++....+ .++.++|||+.|+
T Consensus 373 ~~l~rAvlEgia~~~~~~~~~~~~~~g---~~~~~i~~~GGga~s~~w~Qi~Adv~-g~pv~~~~~-~e~~a~GaA~la~ 447 (505)
T TIGR01314 373 EHMIRAALEGVIYNLYTVALALVEVMG---DPLNMIQATGGFASSEVWRQMMSDIF-EQEIVVPES-YESSCLGACILGL 447 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCcEEEEecCcccCHHHHHHHHHHc-CCeeEecCC-CCcchHHHHHHHH
Confidence 3445555555554444332 3233 24789999999999999999999999 678766544 4688999999998
Q ss_pred HHcC
Q 043296 385 ILSG 388 (650)
Q Consensus 385 ~~~~ 388 (650)
.-.|
T Consensus 448 ~~~G 451 (505)
T TIGR01314 448 KALG 451 (505)
T ss_pred HhcC
Confidence 6554
No 90
>PLN02295 glycerol kinase
Probab=94.75 E-value=0.084 Score=58.76 Aligned_cols=78 Identities=19% Similarity=0.230 Sum_probs=55.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHhc----CC--CCCCCCeEEEEcCccCcHHHHHHHHhhhCCccccccCCcchhHHhHHHHH
Q 043296 309 EELNMDLFRKCMEPVEKCLRDS----KI--DKSLVHDIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQ 382 (650)
Q Consensus 309 e~~~~~~~~~i~~~i~~~l~~~----~~--~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~p~~ava~GAa~~ 382 (650)
.++++.+++.+.-.++..++.. +. ....++.|.++||++++|.+.+++.+.| +.++... +..++.|+|||+.
T Consensus 379 ~~l~RAvlEgia~~~r~~l~~l~~~~~~~~~~~~~~~i~~~GGga~s~~w~Qi~ADv~-g~pV~~~-~~~e~~alGaA~~ 456 (512)
T PLN02295 379 AHIARAVLESMCFQVKDVLDAMRKDAGEEKSHKGLFLLRVDGGATANNLLMQIQADLL-GSPVVRP-ADIETTALGAAYA 456 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceEEEeccchhCHHHHHHHHHhc-CCceEec-CccccHHHHHHHH
Confidence 4455555665555544444432 21 1224788999999999999999999999 6777654 4567889999999
Q ss_pred HHHHcC
Q 043296 383 AAILSG 388 (650)
Q Consensus 383 a~~~~~ 388 (650)
|+.-.|
T Consensus 457 A~~~~G 462 (512)
T PLN02295 457 AGLAVG 462 (512)
T ss_pred HHhhcC
Confidence 986654
No 91
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=94.69 E-value=0.51 Score=47.50 Aligned_cols=47 Identities=17% Similarity=0.068 Sum_probs=39.7
Q ss_pred CCCCeEEEEcC-ccCcHHHHHHHHhhh--CCccccccCCcchhHHhHHHH
Q 043296 335 SLVHDIVLVGG-STRIPKVQQLLQDFF--NGKELCKSINPDEAVAYGAAV 381 (650)
Q Consensus 335 ~~i~~V~LvGG-~sr~p~v~~~l~~~f--~~~~i~~~~~p~~ava~GAa~ 381 (650)
..+..|+++|| .+..|.+++.+...+ -+.++..+.|+...+|+||++
T Consensus 229 ~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 229 YNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred cCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 34788999999 778999999998876 246778888999999999986
No 92
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=94.46 E-value=0.1 Score=58.20 Aligned_cols=75 Identities=23% Similarity=0.259 Sum_probs=53.4
Q ss_pred HHHHHHHHhHHHHHHHHH---HHh-cCCCCCCCCeEEEEcCccCcHHHHHHHHhhhCCccccccCCcchhHHhHHHHHHH
Q 043296 309 EELNMDLFRKCMEPVEKC---LRD-SKIDKSLVHDIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAA 384 (650)
Q Consensus 309 e~~~~~~~~~i~~~i~~~---l~~-~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~p~~ava~GAa~~a~ 384 (650)
.++++.+++.+.-.++.. +++ .+. .++.|.++||+++++...+.+.+.+ +.++....+ .++.++|||+.|+
T Consensus 381 ~~~~RAvlEgia~~~~~~l~~l~~~~g~---~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~~-~e~~alGaA~lA~ 455 (520)
T PRK10939 381 ATLFRALEENAAIVSACNLQQIAAFSGV---FPSSLVFAGGGSKGKLWSQILADVT-GLPVKVPVV-KEATALGCAIAAG 455 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCcEEEEeCCcccCHHHHHHHHHhc-CCeeEEecc-cCchHHHHHHHHH
Confidence 334455555554433333 333 232 4788999999999999999999999 678876654 4678999999998
Q ss_pred HHcC
Q 043296 385 ILSG 388 (650)
Q Consensus 385 ~~~~ 388 (650)
.-.|
T Consensus 456 ~~~G 459 (520)
T PRK10939 456 VGAG 459 (520)
T ss_pred HHhC
Confidence 6654
No 93
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=94.41 E-value=0.097 Score=57.51 Aligned_cols=75 Identities=17% Similarity=0.138 Sum_probs=51.5
Q ss_pred HHHHHHhHHHHHHHHHHHhcCC-CCCCCCeEEEEcCccCcHHHHHHHHhhhCCccccccCCcchhHHhHHHHHHHHHcC
Q 043296 311 LNMDLFRKCMEPVEKCLRDSKI-DKSLVHDIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSG 388 (650)
Q Consensus 311 ~~~~~~~~i~~~i~~~l~~~~~-~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~p~~ava~GAa~~a~~~~~ 388 (650)
+++.+++.+.-.++..++...- ....++.|.++||+++++...+++.+.+ +.+|.... .++.++|||+.|+.-.|
T Consensus 349 l~RAvlEgva~~~r~~l~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~--~ea~alGaa~~a~~a~G 424 (471)
T PRK10640 349 LARCIFDSLALLYADVLHELAQLRGEPFSQLHIVGGGCQNALLNQLCADAC-GIRVIAGP--VEASTLGNIGIQLMTLD 424 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcceEEEECChhhhHHHHHHHHHHh-CCCeeeCC--hhHHHHHHHHHHHHHcC
Confidence 3444455444444333332210 1124788999999999999999999999 67885543 37899999999987654
No 94
>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=94.36 E-value=0.15 Score=53.25 Aligned_cols=56 Identities=23% Similarity=0.373 Sum_probs=47.4
Q ss_pred HhcCCCCCCCCeEEEEcCccCcHHHHHHHHhhhCCccccccCCcchhHHhHHHHHHHH
Q 043296 328 RDSKIDKSLVHDIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAI 385 (650)
Q Consensus 328 ~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~p~~ava~GAa~~a~~ 385 (650)
+..+........|+.+||.||...|-+.|.+.| +.++..- +..++.|.|+|+.|+.
T Consensus 434 ~~lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf-~apVy~~-~~~~sa~lG~A~ra~y 489 (545)
T KOG2531|consen 434 EPLGFKSNPPTRILVTGGASRNEAILQIIADVF-GAPVYTI-EGPNSAALGGAYRAAY 489 (545)
T ss_pred ccccCCCCCCceEEEecCccccHHHHHHHHHHh-CCCeEee-cCCchhhHHHHHHHHH
Confidence 345666667899999999999999999999999 5777654 7888999999999764
No 95
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=94.30 E-value=0.14 Score=48.60 Aligned_cols=30 Identities=40% Similarity=0.336 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHcCCceeeecchhHHHHHh
Q 043296 157 SQRQATKDAGAIAGLNVMRIINEPTAAAIA 186 (650)
Q Consensus 157 ~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~ 186 (650)
...+.+.++++.|||++..++.+|.|++.+
T Consensus 157 ~~v~n~~~~v~~agl~v~~i~~~~~A~~~a 186 (187)
T smart00842 157 SAIQNLEKCVERAGLEVDGIVLEPLASAEA 186 (187)
T ss_pred HHHHHHHHHHHHcCCchhhEEehhhhhEec
Confidence 457888899999999999999999998754
No 96
>PRK09557 fructokinase; Reviewed
Probab=93.38 E-value=11 Score=38.75 Aligned_cols=48 Identities=23% Similarity=0.245 Sum_probs=30.5
Q ss_pred CCCeEEEEcCccCcHHHHHHHHhhhC--------CccccccCCcchhHHhHHHHHH
Q 043296 336 LVHDIVLVGGSTRIPKVQQLLQDFFN--------GKELCKSINPDEAVAYGAAVQA 383 (650)
Q Consensus 336 ~i~~V~LvGG~sr~p~v~~~l~~~f~--------~~~i~~~~~p~~ava~GAa~~a 383 (650)
+++.|+|-||.++.+.+...|++.+. ..++....-.+.+.++||++..
T Consensus 244 dP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 299 (301)
T PRK09557 244 DPDVIVLGGGMSNVDRLYPTLPALLKQYVFGGECETPVRKALHGDSSGVRGAAWLW 299 (301)
T ss_pred CCCEEEEcCcccchHHHHHHHHHHHHHHhcccccCCeEEEcccCCchhhhhhhHhh
Confidence 46788888888877766655655441 1123334445678899998753
No 97
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=92.74 E-value=0.57 Score=51.98 Aligned_cols=77 Identities=26% Similarity=0.288 Sum_probs=47.9
Q ss_pred cHHHHHHHHHHHHhHHHHHHH---HHHHhcCCCCCCCCeEEEEcCccCcHHHHHHHHhhhCCccccccCCcchhHHhHHH
Q 043296 304 TRARFEELNMDLFRKCMEPVE---KCLRDSKIDKSLVHDIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAA 380 (650)
Q Consensus 304 tr~~fe~~~~~~~~~i~~~i~---~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~p~~ava~GAa 380 (650)
+|.+| ++.+++.+.-.+. +.|.+. ....++.|.++||++|++...+++.+.+ +.++..+.. .|+.+.|+|
T Consensus 371 ~~~~l---~ravlEgva~~l~~~~~~l~~~--~g~~~~~i~~~GGgars~~w~Qi~Ad~~-g~~v~~~~~-~e~~a~g~A 443 (502)
T COG1070 371 TRAHL---ARAVLEGVAFALADGLEALEEL--GGKPPSRVRVVGGGARSPLWLQILADAL-GLPVVVPEV-EEAGALGGA 443 (502)
T ss_pred CHHHH---HHHHHHHHHHHHHHHHHHHHHh--cCCCccEEEEECCcccCHHHHHHHHHHc-CCeeEecCc-ccchHHHHH
Confidence 55444 3344444443333 344443 1234678999999999999999999999 677775543 455555555
Q ss_pred HHHHHHc
Q 043296 381 VQAAILS 387 (650)
Q Consensus 381 ~~a~~~~ 387 (650)
+.++.-.
T Consensus 444 ~~~~~~~ 450 (502)
T COG1070 444 ALAAAAL 450 (502)
T ss_pred HHHHHHh
Confidence 5544433
No 98
>PRK09604 UGMP family protein; Validated
Probab=92.74 E-value=13 Score=38.70 Aligned_cols=52 Identities=21% Similarity=0.242 Sum_probs=37.8
Q ss_pred CCCeEEEEcCccCcHHHHHHHHhhhC--CccccccC---CcchhHHhHHHHHHHHHc
Q 043296 336 LVHDIVLVGGSTRIPKVQQLLQDFFN--GKELCKSI---NPDEAVAYGAAVQAAILS 387 (650)
Q Consensus 336 ~i~~V~LvGG~sr~p~v~~~l~~~f~--~~~i~~~~---~p~~ava~GAa~~a~~~~ 387 (650)
.++.|+|.||.+...++++.|.+.+. +.++..+. -.|.++++|++=+-....
T Consensus 254 ~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D~gisIg~ag~~~~~~ 310 (332)
T PRK09604 254 GVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTDNAAMIAAAGYERLKA 310 (332)
T ss_pred CCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcHHHHHHHHHHHHHHHc
Confidence 46789999999999999999998872 23443332 357788888885544444
No 99
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=92.46 E-value=2.2 Score=43.93 Aligned_cols=54 Identities=28% Similarity=0.399 Sum_probs=39.3
Q ss_pred CCCCeEEEEcCccCcHHHHHHHHhhhCCc---cccccCCc----chhHHhHHHHHHHHHcCC
Q 043296 335 SLVHDIVLVGGSTRIPKVQQLLQDFFNGK---ELCKSINP----DEAVAYGAAVQAAILSGE 389 (650)
Q Consensus 335 ~~i~~V~LvGG~sr~p~v~~~l~~~f~~~---~i~~~~~p----~~ava~GAa~~a~~~~~~ 389 (650)
.+++.|+|.|-.+++|-+.+.+++.|... ++. .+.+ -...|.|||+.|.-+.|.
T Consensus 259 ~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v~-~l~~~~~~aKeaA~GaAiIA~glaGG 319 (343)
T PF07318_consen 259 PDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKVR-KLEGLARKAKEAAQGAAIIANGLAGG 319 (343)
T ss_pred CCCCEEEEeccccccHHHHHHHHHHHHhhccccee-ecccccccchhhhhhHHHHhhhhhcc
Confidence 45788999999999999998888887321 121 1222 245899999999887764
No 100
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=92.31 E-value=1.3 Score=47.53 Aligned_cols=99 Identities=13% Similarity=0.071 Sum_probs=59.0
Q ss_pred CcEEEEeCCCCCHHHHHHHHHH-HHHcCCceeeecchhHHHHHhcccccccCCCCCceEEEEEeCCcceEEEEEEEeCCE
Q 043296 144 KNAVVTVPAYFNDSQRQATKDA-GAIAGLNVMRIINEPTAAAIAYGLDKKASRTGEKNVLIFDLGGGTFDVSLLTIEEGI 222 (650)
Q Consensus 144 ~~~VitVPa~~~~~qr~~l~~A-a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~ 222 (650)
..+++|=+..=....|+.|.+. .+.-|++.+.+=-...= ++.++... .....-||+++|..+|-|-.+-- |.
T Consensus 117 hPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDslf---S~~hN~~~--~~~~~~liis~g~~~T~vipvld--G~ 189 (645)
T KOG0681|consen 117 HPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSLF---SFYHNYGK--SSNKSGLIISMGHSATHVIPVLD--GR 189 (645)
T ss_pred CCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhHH---HHhhccCc--ccCcceEEEecCCCcceeEEEec--Cc
Confidence 4568888777777788888765 45668776544222111 11111111 22346899999999998876653 33
Q ss_pred EEEEEeeCCCCCChhHHHHHHHHHHHHH
Q 043296 223 FEVKATAGDTHLGGEDFDNRLVNHFVAE 250 (650)
Q Consensus 223 ~~v~~~~~~~~lGG~~~d~~l~~~l~~~ 250 (650)
.... ...-.++||.....-|.+.+..+
T Consensus 190 ~il~-~~kRiN~GG~qa~dYL~~Lmq~K 216 (645)
T KOG0681|consen 190 LILK-DVKRINWGGYQAGDYLSRLMQLK 216 (645)
T ss_pred hhhh-cceeeccCcchHHHHHHHHHhcc
Confidence 2222 23337899988876666665443
No 101
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=91.90 E-value=0.53 Score=45.64 Aligned_cols=73 Identities=18% Similarity=0.205 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHhcCCCCcEEEEeCCCCCHH-HHHHHHHHHHHcCCceeeecchhHHHHHhcccccccCCCCCceEEEEEe
Q 043296 128 LTKMKEIAEAYLGHAVKNAVVTVPAYFNDS-QRQATKDAGAIAGLNVMRIINEPTAAAIAYGLDKKASRTGEKNVLIFDL 206 (650)
Q Consensus 128 L~~l~~~a~~~~~~~~~~~VitVPa~~~~~-qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~vlV~D~ 206 (650)
.++|++..+...+.++ .++++-..|... .....++.| ||-+.+..+-..-...+..++||+
T Consensus 76 Ve~Ii~~v~~Af~~pv--~~v~~~G~~~ssEa~~~~~~vA----------------AaNW~Ata~~~~e~~~dsci~VD~ 137 (330)
T COG1548 76 VEDIIDTVEKAFNCPV--YVVDVNGNFLSSEALKNPREVA----------------AANWVATARFLAEEIKDSCILVDM 137 (330)
T ss_pred HHHHHHHHHHhcCCce--EEEeccCcCcChhHhcCHHHHH----------------HhhhHHHHHHHHHhcCCceEEEec
Confidence 3456667777666665 688888888764 222232221 111111100000013567899999
Q ss_pred CCcceEEEEEEE
Q 043296 207 GGGTFDVSLLTI 218 (650)
Q Consensus 207 GggT~dvsv~~~ 218 (650)
|+.|+|+.-+.-
T Consensus 138 GSTTtDIIPi~~ 149 (330)
T COG1548 138 GSTTTDIIPIKD 149 (330)
T ss_pred CCcccceEeecc
Confidence 999999987763
No 102
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=91.87 E-value=0.38 Score=49.03 Aligned_cols=74 Identities=23% Similarity=0.430 Sum_probs=42.6
Q ss_pred HHHHHHHcCCceeeecchhHHHHHhc-ccccccCCCCCceEEEEEeCCcceEEEEEEEeCCEEEEEEeeCCCCCChhHHH
Q 043296 162 TKDAGAIAGLNVMRIINEPTAAAIAY-GLDKKASRTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFD 240 (650)
Q Consensus 162 l~~Aa~~AGl~~~~li~Ep~Aaal~y-~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d 240 (650)
+.+.-+..|+++ .+++..+=|.+.| +..... ......+|+|+|||+|.++.++- +.+.-. ...++|.-.+.
T Consensus 77 ~~~i~~~tGi~i-~iIsgeeEa~l~~~gv~~~l--~~~~~~lviDIGGGStEl~~~~~--~~~~~~---~Sl~lG~vrl~ 148 (285)
T PF02541_consen 77 LDRIKKETGIDI-EIISGEEEARLSFLGVLSSL--PPDKNGLVIDIGGGSTELILFEN--GKVVFS---QSLPLGAVRLT 148 (285)
T ss_dssp HHHHHHHHSS-E-EEE-HHHHHHHHHHHHHHHS--TTTSSEEEEEEESSEEEEEEEET--TEEEEE---EEES--HHHHH
T ss_pred HHHHHHHhCCce-EEecHHHHHHHHHHHHHhhc--cccCCEEEEEECCCceEEEEEEC--CeeeEe---eeeehHHHHHH
Confidence 334445679987 5555554444444 332222 24567899999999999998863 333222 22578887776
Q ss_pred HHH
Q 043296 241 NRL 243 (650)
Q Consensus 241 ~~l 243 (650)
+.+
T Consensus 149 e~~ 151 (285)
T PF02541_consen 149 ERF 151 (285)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
No 103
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=91.16 E-value=1.4 Score=44.45 Aligned_cols=88 Identities=26% Similarity=0.254 Sum_probs=48.7
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCceeee---cchhHHHHHhcccccccCCCCCceEEEEEeCCcceEEEEEEEeCCE
Q 043296 146 AVVTVPAYFNDSQRQATKDAGAIAGLNVMRI---INEPTAAAIAYGLDKKASRTGEKNVLIFDLGGGTFDVSLLTIEEGI 222 (650)
Q Consensus 146 ~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~l---i~Ep~Aaal~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~ 222 (650)
+.||=-.--...+|..+......||==++.- -.|+.-|.-..+.... ..+....++=+|+||||+..+++.-.+
T Consensus 90 vIITGEtArk~NA~~vl~alSg~aGDFVVAtAGPdLESiIAGkGaGA~t~-Seqr~t~v~NlDIGGGTtN~slFD~Gk-- 166 (473)
T COG4819 90 VIITGETARKRNARPVLMALSGSAGDFVVATAGPDLESIIAGKGAGAQTL-SEQRLTRVLNLDIGGGTTNYSLFDAGK-- 166 (473)
T ss_pred EEEeccccccccchHHHHHhhhcccceEEEecCCCHHHHhccCCccccch-hhhhceEEEEEeccCCccceeeecccc--
Confidence 4566555566667777666555565322111 1233333322222111 012356788899999999999986433
Q ss_pred EEEEEeeCCCCCChhHH
Q 043296 223 FEVKATAGDTHLGGEDF 239 (650)
Q Consensus 223 ~~v~~~~~~~~lGG~~~ 239 (650)
+..+.. ..+||+-+
T Consensus 167 --v~dTaC-LdiGGRLi 180 (473)
T COG4819 167 --VSDTAC-LDIGGRLI 180 (473)
T ss_pred --ccccee-eecCcEEE
Confidence 233333 56788755
No 104
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=91.04 E-value=0.3 Score=52.13 Aligned_cols=49 Identities=20% Similarity=0.388 Sum_probs=42.5
Q ss_pred CCeEEEEcCccCcHHHHHHHHhhhC-------CccccccCCcchhHHhHHHHHHHH
Q 043296 337 VHDIVLVGGSTRIPKVQQLLQDFFN-------GKELCKSINPDEAVAYGAAVQAAI 385 (650)
Q Consensus 337 i~~V~LvGG~sr~p~v~~~l~~~f~-------~~~i~~~~~p~~ava~GAa~~a~~ 385 (650)
+..|+|+||+|.+|.+.+.|.+.+- ...|....||-..+=+||+.+|+.
T Consensus 559 V~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n 614 (645)
T KOG0681|consen 559 VSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAAN 614 (645)
T ss_pred hhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcC
Confidence 8899999999999999999998762 235677889999999999999874
No 105
>PTZ00288 glucokinase 1; Provisional
Probab=90.41 E-value=9.9 Score=40.64 Aligned_cols=21 Identities=29% Similarity=0.362 Sum_probs=18.3
Q ss_pred CCcEEEEEcCcceeEEEEEEC
Q 043296 6 EGKAIGIDLGTTYSCVGVWQN 26 (650)
Q Consensus 6 ~~~vvGID~GTt~s~va~~~~ 26 (650)
..+++|+|.|.||+++++++.
T Consensus 25 ~~~~~~~DiGgt~~R~~~~~~ 45 (405)
T PTZ00288 25 GPIFVGCDVGGTNARVGFARE 45 (405)
T ss_pred CCeEEEEEecCCceEEEEEec
Confidence 356999999999999999864
No 106
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=89.82 E-value=3.6 Score=45.06 Aligned_cols=94 Identities=21% Similarity=0.245 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCC---CHHHHHHHHHHHHHcCCceeeecchhHHHHHhcccccccCCCCC
Q 043296 122 EISSMVLTKMKEIAEAYLGHAVKNAVVTVPAYF---NDSQRQATKDAGAIAGLNVMRIINEPTAAAIAYGLDKKASRTGE 198 (650)
Q Consensus 122 ~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~---~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~ 198 (650)
+.....+..|+..++...+..+.++ ..|=... -.+.-+.+..+-+..|+++-.+=-|-+|--.+++.-...+ ..
T Consensus 52 eai~R~~~aL~~f~e~~~~~~~~~v-~~vATsA~R~A~N~~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~~--~~ 128 (492)
T COG0248 52 EAIERALSALKRFAELLDGFGAEEV-RVVATSALRDAPNGDEFLARVEKELGLPIEVISGEEEARLIYLGVASTLP--RK 128 (492)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCEE-EEehhHHHHcCCCHHHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcCC--CC
Confidence 3444555555555555555555553 2222111 1123456677778889987555556666555555544432 26
Q ss_pred ceEEEEEeCCcceEEEEEEE
Q 043296 199 KNVLIFDLGGGTFDVSLLTI 218 (650)
Q Consensus 199 ~~vlV~D~GggT~dvsv~~~ 218 (650)
...+|+|+|||+|.+++..-
T Consensus 129 ~~~lv~DIGGGStEl~~g~~ 148 (492)
T COG0248 129 GDGLVIDIGGGSTELVLGDN 148 (492)
T ss_pred CCEEEEEecCCeEEEEEecC
Confidence 67999999999999999873
No 107
>PRK14878 UGMP family protein; Provisional
Probab=89.58 E-value=28 Score=36.09 Aligned_cols=24 Identities=21% Similarity=0.407 Sum_probs=22.1
Q ss_pred CCeEEEEcCccCcHHHHHHHHhhh
Q 043296 337 VHDIVLVGGSTRIPKVQQLLQDFF 360 (650)
Q Consensus 337 i~~V~LvGG~sr~p~v~~~l~~~f 360 (650)
+..|+|+||-+...++++.|.+.+
T Consensus 242 ~~~vvlsGGVa~N~~L~~~l~~~~ 265 (323)
T PRK14878 242 KKEVLLVGGVAANRRLREKLEIMA 265 (323)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHH
Confidence 678999999999999999999876
No 108
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=89.07 E-value=0.3 Score=42.57 Aligned_cols=59 Identities=24% Similarity=0.237 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHHHHHcC---Cceee---------ecchh-HHHHHh
Q 043296 124 SSMVLTKMKEIAEAYLGHAVKNAVVTVPAYFNDSQRQATKDAGAIAG---LNVMR---------IINEP-TAAAIA 186 (650)
Q Consensus 124 ~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AG---l~~~~---------li~Ep-~Aaal~ 186 (650)
++.-|+...+.|++..+.++..+.+++ .....+.+.++++.++ ++... ++..| .|+|++
T Consensus 48 i~~~i~~a~~~AE~~~k~~i~~v~v~~----g~s~l~~i~~~~~~~~~~~v~v~~~~~~~~~~~~~~~p~~Asa~g 119 (120)
T PF14450_consen 48 ISKAIKIAIEEAERLAKCEIGSVYVSI----GGSKLQNIEELIEKCGGMPVRVAGPNIVEGLPEIVLNPEYASAIG 119 (120)
T ss_dssp HHHHHT--HHHHHHH-HHHH--S--TT----GGGGSTTHHHHHHHHHTS-EEE--GGGSET-HHHHT-GGGHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCeeeEEEecC----chhHHHhHHHHHHHhCCCcEEEccccccCcchhhccCceeeEEEe
Confidence 344445555556665555556666555 4556667777777777 66666 78888 787764
No 109
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=88.01 E-value=2.9 Score=42.95 Aligned_cols=106 Identities=20% Similarity=0.288 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHhcCCCCcE-EEEeCCCCCHHHHHHHHHHH-HHcCCceeeecchhHHHHHhc-ccccccCCCCCceEE
Q 043296 126 MVLTKMKEIAEAYLGHAVKNA-VVTVPAYFNDSQRQATKDAG-AIAGLNVMRIINEPTAAAIAY-GLDKKASRTGEKNVL 202 (650)
Q Consensus 126 ~~L~~l~~~a~~~~~~~~~~~-VitVPa~~~~~qr~~l~~Aa-~~AGl~~~~li~Ep~Aaal~y-~~~~~~~~~~~~~vl 202 (650)
..|+..++.+..+ .+.++ +++--+.=....++.+.+.. ...|+++ ++++..+=|.+.| +..... .....+
T Consensus 56 ~~l~~f~~~~~~~---~v~~i~~vaTsa~R~A~N~~~~~~~i~~~tgi~i-~visg~eEa~l~~~gv~~~~---~~~~~~ 128 (300)
T TIGR03706 56 EALKRFAELLRGF---PVDEVRAVATAALRDAKNGPEFLREAEAILGLPI-EVISGEEEARLIYLGVAHTL---PIADGL 128 (300)
T ss_pred HHHHHHHHHHHhC---CCCeEEEEEcHHHHcCCCHHHHHHHHHHHHCCCe-EEeChHHHHHHHHHHHHhCC---CCCCcE
Confidence 4455555555432 33333 23322222223344444444 5679987 6777666666655 322222 112249
Q ss_pred EEEeCCcceEEEEEEEeCCEEEEEEeeCCCCCChhHHHHHH
Q 043296 203 IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRL 243 (650)
Q Consensus 203 V~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l 243 (650)
++|+|||+|.++.+.-. .+. .....++|.-.+.+.+
T Consensus 129 v~DiGGGSte~~~~~~~--~~~---~~~Sl~lG~vrl~e~f 164 (300)
T TIGR03706 129 VVDIGGGSTELILGKDF--EPG---EGVSLPLGCVRLTEQF 164 (300)
T ss_pred EEEecCCeEEEEEecCC--CEe---EEEEEccceEEhHHhh
Confidence 99999999999987632 221 1223456665555543
No 110
>PRK11546 zraP zinc resistance protein; Provisional
Probab=87.78 E-value=13 Score=33.11 Aligned_cols=21 Identities=14% Similarity=0.180 Sum_probs=15.1
Q ss_pred CCCCHHHHHHHHHHHhhhhHH
Q 043296 514 GRLSKEDIERMVQEAEKYKAE 534 (650)
Q Consensus 514 ~~ls~~e~~~~~~~~~~~~~~ 534 (650)
..||+|+.+.+.+...++..+
T Consensus 42 ~~LT~EQQa~~q~I~~~f~~~ 62 (143)
T PRK11546 42 APLTTEQQAAWQKIHNDFYAQ 62 (143)
T ss_pred ccCCHHHHHHHHHHHHHHHHH
Confidence 469999988887766666543
No 111
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=87.66 E-value=2 Score=45.07 Aligned_cols=75 Identities=21% Similarity=0.236 Sum_probs=45.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHhcCCCCCCCCeEEEEcCccCcHHHHHHHHhhhCCccccc----cCCcchhHHhHHHHHHH
Q 043296 309 EELNMDLFRKCMEPVEKCLRDSKIDKSLVHDIVLVGGSTRIPKVQQLLQDFFNGKELCK----SINPDEAVAYGAAVQAA 384 (650)
Q Consensus 309 e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~----~~~p~~ava~GAa~~a~ 384 (650)
+++..-+.+=+...|.+.++.... .++.|+++||+++.|.|.+.|++.+++.++.. .++|+.-=|.+-|++|.
T Consensus 260 ~D~~aTlt~~TA~sI~~~i~~~~~---~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~~EA~aFA~La~ 336 (364)
T PF03702_consen 260 EDILATLTEFTAQSIADAIRRFPP---QPDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDAKEAMAFAWLAY 336 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-T---T-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC---CCceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHHHHHHHHHHHHH
Confidence 344444445555556566665432 27899999999999999999999997644432 23444444555666666
Q ss_pred HH
Q 043296 385 IL 386 (650)
Q Consensus 385 ~~ 386 (650)
..
T Consensus 337 ~~ 338 (364)
T PF03702_consen 337 RR 338 (364)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 112
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=87.58 E-value=1.9 Score=46.03 Aligned_cols=78 Identities=19% Similarity=0.250 Sum_probs=57.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHhcCCCCC-CCCeEEEEcCccCcHHHHHHHHhhhCCccccccCCcchhHHhHHHHHHHHHc
Q 043296 309 EELNMDLFRKCMEPVEKCLRDSKIDKS-LVHDIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILS 387 (650)
Q Consensus 309 e~~~~~~~~~i~~~i~~~l~~~~~~~~-~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~p~~ava~GAa~~a~~~~ 387 (650)
+++++..++.+.=...++++....+.. .++.+-+=||.++..++.+...+.+ +.+|.++. -.|..|+|||+.|..-.
T Consensus 374 ~hi~RA~LEsiayQ~~dv~~aM~~d~~~~~~~LrvDGG~s~n~~lmQfqADil-g~~V~Rp~-~~EtTAlGaA~lAGla~ 451 (499)
T COG0554 374 AHIARATLESIAYQTRDVLEAMEKDSGIKLTRLRVDGGASRNNFLMQFQADIL-GVPVERPV-VLETTALGAAYLAGLAV 451 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEcCccccchhHHHHHHHHh-CCeeeccc-cchhhHHHHHHHHhhhh
Confidence 455666666665555555443222111 5788888899999999999999999 68888774 46889999999998766
Q ss_pred C
Q 043296 388 G 388 (650)
Q Consensus 388 ~ 388 (650)
|
T Consensus 452 G 452 (499)
T COG0554 452 G 452 (499)
T ss_pred C
Confidence 5
No 113
>PLN02666 5-oxoprolinase
Probab=87.53 E-value=6 Score=48.47 Aligned_cols=78 Identities=10% Similarity=0.094 Sum_probs=50.3
Q ss_pred EcHHHHHHHHHHHH-hHHHHHHHHHHHhcCCCCCCCCeEEEEcCccCcHHHHHHHHhhhCCccccccCCcchhHHhHHHH
Q 043296 303 ITRARFEELNMDLF-RKCMEPVEKCLRDSKIDKSLVHDIVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAV 381 (650)
Q Consensus 303 itr~~fe~~~~~~~-~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~~~~p~~ava~GAa~ 381 (650)
++-++...-+..++ ....+.|+......|.++.+. .++..||++ |...-.|.+.++=..+..+.+|.-..|.|+++
T Consensus 454 ~~~e~aA~~i~~ia~~~m~~air~i~~~~G~dpr~~-~l~afGGag--p~ha~~lA~~lgi~~vivP~~~gv~sA~G~~~ 530 (1275)
T PLN02666 454 MSVEEVALGFVRVANEAMCRPIRQLTEMKGYETANH-ALACFGGAG--PQHACAIARALGMSEVFVHRYCGILSAYGMGL 530 (1275)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc-eEEEecCcH--HHHHHHHHHHcCCCEEEeCCCccHHHHHHHHh
Confidence 34444444333333 344566666666667766543 344455553 88888899999544588888999999999987
Q ss_pred HH
Q 043296 382 QA 383 (650)
Q Consensus 382 ~a 383 (650)
--
T Consensus 531 ad 532 (1275)
T PLN02666 531 AD 532 (1275)
T ss_pred hh
Confidence 43
No 114
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=85.40 E-value=5.5 Score=40.10 Aligned_cols=174 Identities=17% Similarity=0.192 Sum_probs=92.4
Q ss_pred cchhHHHHHhcccccccCCCCCceEEEEEeCCcceEEEEEEEeCCEEE-EE-EeeC-CCCCChhHHHHHHHHHHHHHHHh
Q 043296 177 INEPTAAAIAYGLDKKASRTGEKNVLIFDLGGGTFDVSLLTIEEGIFE-VK-ATAG-DTHLGGEDFDNRLVNHFVAEFRR 253 (650)
Q Consensus 177 i~Ep~Aaal~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~-v~-~~~~-~~~lGG~~~d~~l~~~l~~~~~~ 253 (650)
...|+=..++|...... .-++++|.|+-+-|+.+.|- ++++- -+ ++.+ -..++ --+|-.++..+-.
T Consensus 129 ~aSpEKi~iay~a~~~~---~~~~~ivsDiSSNTVtlaVk---~GKIVggidaciGAPG~lh-GpLDlE~ir~Id~---- 197 (326)
T TIGR03281 129 IASPEKVSIAYNAYCLT---GFKDFIVSDISSNTVTLLIK---DGKIIGGFDACVGAPGVLH-GPLDLEAIRNIDA---- 197 (326)
T ss_pred cCCHHHHHHHHHHHHHc---CCCCEEEEecCCCeEEEEEE---CCEEEccccccccCccccc-CcccHHHHHhccc----
Confidence 45677777888665543 23689999999988887764 33221 00 0001 01122 2345444433211
Q ss_pred hcCCCCCccHHHHHHHHHHHH-HHHHHccCCCceEEEEcccccCeeEEEEEcHHHHHHHHHH------HHhHHHHHHHHH
Q 043296 254 KHKKDISGNARALRRLRTACE-RAKRTLSSTTQTTIEIDSLYEGIDFYATITRARFEELNMD------LFRKCMEPVEKC 326 (650)
Q Consensus 254 ~~~~~~~~~~~~~~~L~~~~e-~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~fe~~~~~------~~~~i~~~i~~~ 326 (650)
.+ .+-+.||...-.. +-.++.+ ...+++||.+.+.. -++.+...+...
T Consensus 198 -------------------g~~tan~aFs~aGa~k--Ia~~~~~----~~~~~eE~~~~~~~~e~~~lA~dal~~~vame 252 (326)
T TIGR03281 198 -------------------GKKTANEAFSHAGAVK--IACADKG----VENAKEEILNNYNGDEPGRLALDSLAMSVAME 252 (326)
T ss_pred -------------------CcccHHHHHhhcCeeE--Eeccccc----ccCCHHHHHHHhccChhHHHHHHHHHHHHHHH
Confidence 11 1122333222111 1111111 14567777665422 233333333333
Q ss_pred HHhcCCCCCCCCeEEEEcC--ccCcH-HHHHHHHhhhCCccccccCCcchhHHhHHHHHHHHHcCC
Q 043296 327 LRDSKIDKSLVHDIVLVGG--STRIP-KVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGE 389 (650)
Q Consensus 327 l~~~~~~~~~i~~V~LvGG--~sr~p-~v~~~l~~~f~~~~i~~~~~p~~ava~GAa~~a~~~~~~ 389 (650)
+............|+|.|- ++|.| .+++.|++.|. .++.. +.. .+.|.|+|+.|.-+.+.
T Consensus 253 IasLl~l~~~~~~IvLSGs~g~~r~~~~v~~~I~~~L~-~~V~~-L~~-ksAA~G~AiIA~dI~gG 315 (326)
T TIGR03281 253 IASLGLLDCKEAGVVLAGSGGTLREPINFSGKIKRVLS-CKVLV-LDS-ESAAIGLALIAEDIFSG 315 (326)
T ss_pred HHhheeccCCCCcEEEeCcchhccCchHHHHHHHHHhC-CCeEE-ecc-hhhhhhHHHHHHHHhCC
Confidence 3222222123347999987 99999 99999999994 44433 333 88999999999877653
No 115
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]
Probab=85.06 E-value=48 Score=33.82 Aligned_cols=97 Identities=16% Similarity=0.176 Sum_probs=53.6
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCceeeec---chhHHHHHhcccccccCCCCCceEEEEEeCCcceEEEEEEEeCC
Q 043296 145 NAVVTVPAYFNDSQRQATKDAGAIAGLNVMRII---NEPTAAAIAYGLDKKASRTGEKNVLIFDLGGGTFDVSLLTIEEG 221 (650)
Q Consensus 145 ~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~li---~Ep~Aaal~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~ 221 (650)
...+|-|.--.+..|.-+.+..-.. |++..+. ..-.|.|..|....-. +..-+=+|+|-|-|-+-+-.+. .+
T Consensus 108 ~fLlteppln~penreytaeImfEs-fnvpglyiAVqavLALaaswts~~v~--er~ltG~VidsGdgvThvipva--Eg 182 (415)
T KOG0678|consen 108 YFLLTEPPLNQPENREYTAEIMFES-FNVPGLYIAVQAVLALAASWTSRQVG--ERFLTGIVIDSGDGVTHVIPVA--EG 182 (415)
T ss_pred eEEecCCCCCCchhhHHHHHhhhhh-ccCchHHHHHHHHHHHHHHHHHhhhh--hheeeeEEEecCCCeeEEEEee--cc
Confidence 3578888777777777766543221 3333221 2222223333211111 1222347999999988776654 33
Q ss_pred EEEEEEeeCCCCCChhHHHHHHHHHH
Q 043296 222 IFEVKATAGDTHLGGEDFDNRLVNHF 247 (650)
Q Consensus 222 ~~~v~~~~~~~~lGG~~~d~~l~~~l 247 (650)
. -+.+.-...++.|++++.-+...+
T Consensus 183 y-VigScik~iPiagrdiT~fiQ~ll 207 (415)
T KOG0678|consen 183 Y-VIGSCIKHIPIAGRDITYFIQQLL 207 (415)
T ss_pred e-EEeeeeccccccCCchhHHHHHHh
Confidence 2 233334568899999987665554
No 116
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=84.36 E-value=24 Score=40.53 Aligned_cols=74 Identities=9% Similarity=0.047 Sum_probs=39.7
Q ss_pred HHHHHHhHHHHHHHHHHHhcCCCCCCCCeEEEEcCccCc--HHHHH-HHHhhhCC----------ccccccCCcchhHHh
Q 043296 311 LNMDLFRKCMEPVEKCLRDSKIDKSLVHDIVLVGGSTRI--PKVQQ-LLQDFFNG----------KELCKSINPDEAVAY 377 (650)
Q Consensus 311 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~--p~v~~-~l~~~f~~----------~~i~~~~~p~~ava~ 377 (650)
++...++.+...+-..+...-.....++.|+|-||-+.- +++.+ .+.+.|.. .++....+ +.+.-.
T Consensus 244 ~A~~~~~~~~~~lg~~~~nl~~~~~~p~~vvigGGIs~~~~~~l~~~~f~~~f~~kg~~~~~~~~ipv~~i~~-~~~~l~ 322 (638)
T PRK14101 244 LALEAVECFCAILGTFAGNLALTLGALGGIYIGGGVVPKLGELFTRSSFRARFEAKGRFEAYLANIPTYLITA-EYPAFL 322 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEeCcHHHHHHHHcChHHHHHHHHhCCChHHHHhcCCEEEEeC-CChhHH
Confidence 344555666555555554432223336789999998733 55553 56666622 23333333 345567
Q ss_pred HHHHHHHH
Q 043296 378 GAAVQAAI 385 (650)
Q Consensus 378 GAa~~a~~ 385 (650)
||+.++..
T Consensus 323 Gaa~~~~~ 330 (638)
T PRK14101 323 GVSAILAE 330 (638)
T ss_pred HHHHHHHH
Confidence 88555543
No 117
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=83.89 E-value=61 Score=34.16 Aligned_cols=82 Identities=18% Similarity=0.142 Sum_probs=56.8
Q ss_pred EEEcHHHHHHHHHHHHhHHH-HHHHHHHHhcCCCCCCCCe-EEEEcCccCcHHHHHHHHhhhCCcccc-ccCCcchhHHh
Q 043296 301 ATITRARFEELNMDLFRKCM-EPVEKCLRDSKIDKSLVHD-IVLVGGSTRIPKVQQLLQDFFNGKELC-KSINPDEAVAY 377 (650)
Q Consensus 301 ~~itr~~fe~~~~~~~~~i~-~~i~~~l~~~~~~~~~i~~-V~LvGG~sr~p~v~~~l~~~f~~~~i~-~~~~p~~ava~ 377 (650)
..-.+.++...++..+++++ ..++.++++.+ ++. |.|.||....-..-..|.+..+-.++. .+.-.|.-+|+
T Consensus 131 ~~~~~~dlAa~~Q~~~E~~v~~~~~~~~~~~g-----~~~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD~G~ai 205 (360)
T PF02543_consen 131 LTQRHADLAASAQKVLEEIVLHLVRHLLERTG-----IDNNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGDAGLAI 205 (360)
T ss_dssp EESS-HHHHHHHHHHHHHHHHHHHHHHHHHHT-------SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSGGGHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCCcchHH
Confidence 45677788877787777765 55666777766 455 999999998888888888874334444 34456788999
Q ss_pred HHHHHHHHHc
Q 043296 378 GAAVQAAILS 387 (650)
Q Consensus 378 GAa~~a~~~~ 387 (650)
|||+++....
T Consensus 206 GaA~~~~~~~ 215 (360)
T PF02543_consen 206 GAALYAWHEL 215 (360)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998655
No 118
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=82.83 E-value=59 Score=33.20 Aligned_cols=48 Identities=23% Similarity=0.205 Sum_probs=31.2
Q ss_pred CCCeEEEEcCccCcHHHHHHHHhhhCC--------ccccccCCcchhHHhHHHHHH
Q 043296 336 LVHDIVLVGGSTRIPKVQQLLQDFFNG--------KELCKSINPDEAVAYGAAVQA 383 (650)
Q Consensus 336 ~i~~V~LvGG~sr~p~v~~~l~~~f~~--------~~i~~~~~p~~ava~GAa~~a 383 (650)
+++.|+|-||.+..|.+.+.|++.+.. .++....-.+.+.++|||..+
T Consensus 245 dP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 300 (303)
T PRK13310 245 DPHLVVLGGGLSNFDAIYEQLPKRLPRHLLPVARVPRIEKARHGDAGGVRGAAFLH 300 (303)
T ss_pred CCCEEEECCcccChHHHHHHHHHHHHHHhcccccCceEEEcccCchHHHHhHHHHh
Confidence 467888877777666666666655421 123344455678899999875
No 119
>PLN02920 pantothenate kinase 1
Probab=82.75 E-value=8.5 Score=40.43 Aligned_cols=49 Identities=12% Similarity=-0.128 Sum_probs=37.7
Q ss_pred CCCCeEEEEcCccCcH-HHHHHHHhhh-----CCccccccCCcchhHHhHHHHHH
Q 043296 335 SLVHDIVLVGGSTRIP-KVQQLLQDFF-----NGKELCKSINPDEAVAYGAAVQA 383 (650)
Q Consensus 335 ~~i~~V~LvGG~sr~p-~v~~~l~~~f-----~~~~i~~~~~p~~ava~GAa~~a 383 (650)
..++.|+++|.+.|.+ ..++.|.-.+ ++.+....-+....-|+||.+..
T Consensus 296 ~~ik~Ivf~G~fir~~~~tm~~ls~a~~fwS~g~~ka~FLrHeGYlGAlGAfl~~ 350 (398)
T PLN02920 296 FGLKRIFFGGFFIRGHSYTMDTISVAVHFWSKGEAKAMFLRHEGFLGALGAFMSY 350 (398)
T ss_pred cCCCEEEEEeecccCcHHHHHHHHHHHHHhccCceeEEEecCcchhHHHHHHHhc
Confidence 4589999999999998 7777554332 34567777788999999998754
No 120
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=80.09 E-value=1.1e+02 Score=34.34 Aligned_cols=52 Identities=15% Similarity=0.285 Sum_probs=38.2
Q ss_pred CCeEEEEcCccCcHHHHHHHHhhhC--CccccccC---CcchhHHhHHHHHHHHHcC
Q 043296 337 VHDIVLVGGSTRIPKVQQLLQDFFN--GKELCKSI---NPDEAVAYGAAVQAAILSG 388 (650)
Q Consensus 337 i~~V~LvGG~sr~p~v~~~l~~~f~--~~~i~~~~---~p~~ava~GAa~~a~~~~~ 388 (650)
++.|+|+||-....++++.|.+.+. +.++..+. -.|.++++|++.+....++
T Consensus 246 ~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~~~~D~g~~ia~a~~~~~~~g 302 (535)
T PRK09605 246 KDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGDNGAMIAWLGLLMYKAG 302 (535)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCccccchHHHHHHHHHHHHHcC
Confidence 5779999999999999999996651 23444433 4578899998876555443
No 121
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=79.79 E-value=10 Score=39.82 Aligned_cols=71 Identities=18% Similarity=0.258 Sum_probs=44.6
Q ss_pred HHHHHhHHHHHHHHHHHhcCCCCCCCCeEEEEcCccCcHHHHHHHHhhhCCccccc----cCCcchhHHhHHHHHHHHH
Q 043296 312 NMDLFRKCMEPVEKCLRDSKIDKSLVHDIVLVGGSTRIPKVQQLLQDFFNGKELCK----SINPDEAVAYGAAVQAAIL 386 (650)
Q Consensus 312 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~~----~~~p~~ava~GAa~~a~~~ 386 (650)
+.-+..=+...|.++++... ...+.|+++||+++.|.|.++|++.++ .++.. ..+++.-=|..-|++|...
T Consensus 265 ~aTlt~~TA~sI~~~~~~~~---~~~~~vlv~GGGa~N~~Lm~~L~~~l~-~~v~~~~~~G~~~da~EA~aFA~La~~~ 339 (365)
T PRK09585 265 QATLTELTAASIARAVRRLP---PGPDELLVCGGGARNPTLMERLAALLP-TEVATTDALGIDGDAKEALAFAWLAVRT 339 (365)
T ss_pred HHHHHHHHHHHHHHHHHhcc---CCCCEEEEECCCcchHHHHHHHHHhcC-CcccCHHHcCCChhHHHHHHHHHHHHHH
Confidence 33344444455555554432 224689999999999999999999995 33322 1345544555566666543
No 122
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=78.55 E-value=31 Score=35.45 Aligned_cols=37 Identities=24% Similarity=0.533 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhcCCCCCCCCeEEEEcCccCcHHHHHHHHhhh
Q 043296 319 CMEPVEKCLRDSKIDKSLVHDIVLVGGSTRIPKVQQLLQDFF 360 (650)
Q Consensus 319 i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f 360 (650)
+.+.++++++.. .++.|+|.||.....++++.|.+.+
T Consensus 246 l~~~~~~~~~~~-----g~~~vvlsGGVa~N~~L~~~l~~~~ 282 (305)
T TIGR00329 246 LIEKTKRALKDT-----GPKELVLVGGVSANKRLREMLETLC 282 (305)
T ss_pred HHHHHHHHHHHc-----CCCEEEEECCHHHHHHHHHHHHHHH
Confidence 334455555543 3678999999999999999999876
No 123
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=78.20 E-value=24 Score=36.65 Aligned_cols=54 Identities=22% Similarity=0.226 Sum_probs=42.5
Q ss_pred CCCCCCeEEEEcCccCcHHHHHHHHhhhCCcccc----ccCCcchhHHhHHHHHHHHH
Q 043296 333 DKSLVHDIVLVGGSTRIPKVQQLLQDFFNGKELC----KSINPDEAVAYGAAVQAAIL 386 (650)
Q Consensus 333 ~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~~i~----~~~~p~~ava~GAa~~a~~~ 386 (650)
.....+.++++||+.+.|++...|...+++..|. ..++++..=|.+-|+.|...
T Consensus 287 ~~~~p~~l~vcGGG~~N~llm~rLa~l~~g~~V~~t~~~g~~gd~~EA~afA~LA~r~ 344 (371)
T COG2377 287 LQGDPRRLVVCGGGRRNPLLMARLAALLEGVEVATTDEAGLDGDAVEAEAFAWLAWRT 344 (371)
T ss_pred ccCCCceeEeecCCccCHHHHHHHHHhcCCCeeeechhcCCCcchhhHHHHHHHHHHH
Confidence 3456789999999999999999999999765554 24577777778888877654
No 124
>PRK03011 butyrate kinase; Provisional
Probab=77.74 E-value=5.1 Score=42.15 Aligned_cols=47 Identities=23% Similarity=0.218 Sum_probs=36.9
Q ss_pred CCCeEEEEcCccCcHHHHHHHHhhhC---CccccccCCcchhHHhHHHHH
Q 043296 336 LVHDIVLVGGSTRIPKVQQLLQDFFN---GKELCKSINPDEAVAYGAAVQ 382 (650)
Q Consensus 336 ~i~~V~LvGG~sr~p~v~~~l~~~f~---~~~i~~~~~p~~ava~GAa~~ 382 (650)
+++.|+|.||.+..+.+++.|++.+. ...+....+..+|.+.||+..
T Consensus 295 dpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~GA~rv 344 (358)
T PRK03011 295 KVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEGALRV 344 (358)
T ss_pred CCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHHH
Confidence 58999999999999999999988763 234555556678999998753
No 125
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=75.99 E-value=3 Score=47.44 Aligned_cols=41 Identities=27% Similarity=0.509 Sum_probs=28.9
Q ss_pred eeecchhHHHHHhcccccccCCCCCceEEEEEeCCcceEEEEEE
Q 043296 174 MRIINEPTAAAIAYGLDKKASRTGEKNVLIFDLGGGTFDVSLLT 217 (650)
Q Consensus 174 ~~li~Ep~Aaal~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~ 217 (650)
..+.+-|.|..+...+.... ..+ +++++||||.|||++++.
T Consensus 256 ~tI~SGPAagvvGAa~ltg~--~~g-~~i~~DmGGTStDva~i~ 296 (674)
T COG0145 256 ETILSGPAAGVVGAAYLTGL--KAG-NAIVFDMGGTSTDVALII 296 (674)
T ss_pred eeEeeccHHHHHHHHHhccc--ccC-CEEEEEcCCcceeeeeee
Confidence 34667777776665443221 123 699999999999999987
No 126
>PRK00976 hypothetical protein; Provisional
Probab=75.97 E-value=12 Score=38.56 Aligned_cols=50 Identities=20% Similarity=0.325 Sum_probs=38.6
Q ss_pred CCCeEEEEcCccCcH--HHHHHHHhhhCCccccccCCcchhHHhHHHHHHHHHcC
Q 043296 336 LVHDIVLVGGSTRIP--KVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSG 388 (650)
Q Consensus 336 ~i~~V~LvGG~sr~p--~v~~~l~~~f~~~~i~~~~~p~~ava~GAa~~a~~~~~ 388 (650)
+++.|+|-||.++.+ .+.+.+++.+. ..+ ..-...+.++|||+.|....+
T Consensus 263 DPe~IVLGGGVS~~~e~~L~~~I~e~l~-~~~--a~LG~dAGaiGAA~iA~~i~~ 314 (326)
T PRK00976 263 PEDNVVLAGSVGEMDEPDVSERIKELLD-KKV--LVLGKESAAIGLALIARDIFN 314 (326)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHhc-ccc--cccCCchHHHHHHHHHHHHhC
Confidence 478899999999998 88899988873 232 223458999999999887653
No 127
>PRK09343 prefoldin subunit beta; Provisional
Probab=75.26 E-value=44 Score=29.04 Aligned_cols=89 Identities=18% Similarity=0.130 Sum_probs=54.7
Q ss_pred hhhHHhHHHHHHHHHHHhHHHHHHHHHhhccch-hhh---cccCHHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Q 043296 530 KYKAEDEQVKKKVEAKNKLENYAYSMRNTVKDD-KVA---GKLAAADKQKIEKAVDETVEWLDGNQLAEVDEFEDKLKEL 605 (650)
Q Consensus 530 ~~~~~d~~~~~~~~akN~LE~~iy~~r~~L~~~-~~~---~~~~~~~~~~i~~~l~e~~~WL~~~~~a~~~~~~~kl~eL 605 (650)
++.....++......+|+.+..+.++...=++. .|. ..+-..++..+...+++-.+.++. ..+.++.+.+.|
T Consensus 22 ~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie~----~ik~lekq~~~l 97 (121)
T PRK09343 22 QLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELLEL----RSRTLEKQEKKL 97 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 333344444444455555555555554332221 222 233345777777777777777763 678888888888
Q ss_pred HHhHHHHHHHHhcCCCC
Q 043296 606 EGLCNPIIAKMYQGDGG 622 (650)
Q Consensus 606 ~~~~~~i~~r~~e~~~~ 622 (650)
+..+......+.+...+
T Consensus 98 ~~~l~e~q~~l~~ll~~ 114 (121)
T PRK09343 98 REKLKELQAKINEMLSK 114 (121)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 88888888888886644
No 128
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=74.91 E-value=2.8 Score=41.55 Aligned_cols=19 Identities=32% Similarity=0.466 Sum_probs=17.1
Q ss_pred cEEEEEcCcceeEEEEEEC
Q 043296 8 KAIGIDLGTTYSCVGVWQN 26 (650)
Q Consensus 8 ~vvGID~GTt~s~va~~~~ 26 (650)
+++|||+|||++++++++.
T Consensus 1 y~lgiDiGTts~K~~l~d~ 19 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFDE 19 (245)
T ss_dssp EEEEEEECSSEEEEEEEET
T ss_pred CEEEEEEcccceEEEEEeC
Confidence 4899999999999999973
No 129
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=74.22 E-value=1.1e+02 Score=31.59 Aligned_cols=42 Identities=17% Similarity=0.344 Sum_probs=30.2
Q ss_pred CCeEEEEcCccCcHHHHHHHHhhhC--CccccccC---CcchhHHhH
Q 043296 337 VHDIVLVGGSTRIPKVQQLLQDFFN--GKELCKSI---NPDEAVAYG 378 (650)
Q Consensus 337 i~~V~LvGG~sr~p~v~~~l~~~f~--~~~i~~~~---~p~~ava~G 378 (650)
+..|+|+||.+...++++.|.+.+. +.++..+. -.|.++++|
T Consensus 243 ~~~lvlsGGVa~N~~L~~~l~~~l~~~g~~v~~~~~~p~~D~Gi~Ig 289 (322)
T TIGR03722 243 KKEVLLVGGVAANRRLREMLELMAEDRGAKFYVPPPEYAGDNGAMIA 289 (322)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEEcCCCCCCchHHHHHH
Confidence 6789999999999999999998652 23443322 235677777
No 130
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=74.06 E-value=35 Score=35.10 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=19.9
Q ss_pred CCCCcEEEEEcCcceeEEEEEEC
Q 043296 4 KTEGKAIGIDLGTTYSCVGVWQN 26 (650)
Q Consensus 4 ~~~~~vvGID~GTt~s~va~~~~ 26 (650)
+.+..++|||+|.|++.+++.+.
T Consensus 3 ~~~~~~lgidIggt~i~~~l~d~ 25 (314)
T COG1940 3 PEAMTVLGIDIGGTKIKVALVDL 25 (314)
T ss_pred ccCcEEEEEEecCCEEEEEEECC
Confidence 45678999999999999999854
No 131
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=73.97 E-value=3.1 Score=34.53 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=16.8
Q ss_pred cEEEEEcCcceeEEEEEEC
Q 043296 8 KAIGIDLGTTYSCVGVWQN 26 (650)
Q Consensus 8 ~vvGID~GTt~s~va~~~~ 26 (650)
.++|||+|.|++++|+.+.
T Consensus 2 ~ilgiD~Ggt~i~~a~~d~ 20 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDE 20 (99)
T ss_pred cEEEEccCCCeEEEEEECC
Confidence 3899999999999999853
No 132
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=71.12 E-value=11 Score=39.62 Aligned_cols=79 Identities=24% Similarity=0.364 Sum_probs=44.6
Q ss_pred ceEecHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCceeeecchhHHH--HHhcccccc
Q 043296 115 EKRFSPEEISSMVLTKMKEIAEAYLGHAVKNAVVTVPAYFNDSQRQATKDAGAIAGLNVMRIINEPTAA--AIAYGLDKK 192 (650)
Q Consensus 115 ~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aa--al~y~~~~~ 192 (650)
+....|.+-+..+|+.++++.+......+..-.++|=.. .+|..-| .+.|....-
T Consensus 151 GLRlL~~~ka~~IL~aVre~l~~~s~f~v~~d~VsIm~G-----------------------tdEGv~aWiTiN~Llg~L 207 (453)
T KOG1385|consen 151 GLRLLPGSKADNILQAVRELLKNDSPFPVVEDAVSIMDG-----------------------TDEGVYAWITINYLLGTL 207 (453)
T ss_pred ccccCChhHHHHHHHHHHHHHhccCCccccCCceeeccC-----------------------cccceeeeeehhhhhccc
Confidence 345778888999999999988744333222222222111 0111111 133333222
Q ss_pred cCCCCCceEEEEEeCCcceEEEEEE
Q 043296 193 ASRTGEKNVLIFDLGGGTFDVSLLT 217 (650)
Q Consensus 193 ~~~~~~~~vlV~D~GggT~dvsv~~ 217 (650)
. .....++.|+|+|||+|.++..-
T Consensus 208 ~-~~~~~tvgv~DLGGGSTQi~f~p 231 (453)
T KOG1385|consen 208 G-APGHRTVGVVDLGGGSTQITFLP 231 (453)
T ss_pred C-CCCCCceEEEEcCCceEEEEEec
Confidence 1 11256899999999999999765
No 133
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=70.89 E-value=14 Score=27.57 Aligned_cols=29 Identities=17% Similarity=0.248 Sum_probs=26.7
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCce
Q 043296 145 NAVVTVPAYFNDSQRQATKDAGAIAGLNV 173 (650)
Q Consensus 145 ~~VitVPa~~~~~qr~~l~~Aa~~AGl~~ 173 (650)
...++.|+.++..+|..+.+.|...||..
T Consensus 16 ~~~l~Fpp~ls~~eR~~vH~~a~~~gL~s 44 (59)
T cd06007 16 NEEYEFPSSLTNHERAVIHRLCRKLGLKS 44 (59)
T ss_pred ccEEEcCCCCCHHHHHHHHHHHHHcCCCc
Confidence 56899999999999999999999999965
No 134
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=70.45 E-value=9.3 Score=44.08 Aligned_cols=49 Identities=27% Similarity=0.348 Sum_probs=37.4
Q ss_pred CCCeEEEEcCccCcHHHHHHHHhhhC--Ccccccc---CCcchhHHhHHHHHHH
Q 043296 336 LVHDIVLVGGSTRIPKVQQLLQDFFN--GKELCKS---INPDEAVAYGAAVQAA 384 (650)
Q Consensus 336 ~i~~V~LvGG~sr~p~v~~~l~~~f~--~~~i~~~---~~p~~ava~GAa~~a~ 384 (650)
.++.|+|+||..+..++++.|.+.+. +.++..+ .-.|.+++.|.|++|+
T Consensus 658 g~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~~p~nDgGislGQa~~a~ 711 (711)
T TIGR00143 658 GIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPPGDGGISLGQAVAAA 711 (711)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999998773 2334332 2357899999988763
No 135
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=69.54 E-value=29 Score=33.37 Aligned_cols=76 Identities=13% Similarity=0.266 Sum_probs=46.1
Q ss_pred EEcHHHHH-HHHHHHHhHHHHHHHHHHHhcCCCCCCCCeEEEEcCccCcHHHHHHHHhhhCCc-cccccCCcchhHHhHH
Q 043296 302 TITRARFE-ELNMDLFRKCMEPVEKCLRDSKIDKSLVHDIVLVGGSTRIPKVQQLLQDFFNGK-ELCKSINPDEAVAYGA 379 (650)
Q Consensus 302 ~itr~~fe-~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~~~-~i~~~~~p~~ava~GA 379 (650)
..|.+++- ++-+.++.-+++.-++++.-.+ -+.|++|||-...-.+|+++....... -.....|-..|+-.|+
T Consensus 224 ~~t~~DLCySLQEtvFamLVEiTERAMAh~~-----s~evLIVGGVGCN~RLQeMM~~Mc~eRgg~~faTDeRfCIDNG~ 298 (336)
T KOG2708|consen 224 EVTKEDLCYSLQETVFAMLVEITERAMAHCG-----SKEVLIVGGVGCNERLQEMMAIMCSERGGKLFATDERFCIDNGV 298 (336)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CCcEEEEecccccHHHHHHHHHHHHhcCCceEecccceeeeCch
Confidence 34554442 2333344555555666666544 357999999999999999998887321 1222334555666676
Q ss_pred HHH
Q 043296 380 AVQ 382 (650)
Q Consensus 380 a~~ 382 (650)
-+.
T Consensus 299 MIA 301 (336)
T KOG2708|consen 299 MIA 301 (336)
T ss_pred HHH
Confidence 553
No 136
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=68.99 E-value=5.4 Score=35.50 Aligned_cols=20 Identities=25% Similarity=0.370 Sum_probs=18.3
Q ss_pred cEEEEEcCcceeEEEEEECC
Q 043296 8 KAIGIDLGTTYSCVGVWQND 27 (650)
Q Consensus 8 ~vvGID~GTt~s~va~~~~g 27 (650)
.++|||+|+..+++|+.++.
T Consensus 2 riL~lD~G~kriGiAvsd~~ 21 (135)
T PF03652_consen 2 RILGLDYGTKRIGIAVSDPL 21 (135)
T ss_dssp EEEEEEECSSEEEEEEEETT
T ss_pred eEEEEEeCCCeEEEEEecCC
Confidence 58999999999999999765
No 137
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=68.44 E-value=68 Score=31.74 Aligned_cols=97 Identities=19% Similarity=0.290 Sum_probs=59.4
Q ss_pred cCCCCcEEE--EeCCCCCHHHHHHHHHHHHHcCCceeeecchhHHHHHhcccccccCCCCCceEEEEEeCCcceEEEEEE
Q 043296 140 GHAVKNAVV--TVPAYFNDSQRQATKDAGAIAGLNVMRIINEPTAAAIAYGLDKKASRTGEKNVLIFDLGGGTFDVSLLT 217 (650)
Q Consensus 140 ~~~~~~~Vi--tVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~ 217 (650)
+..+...+. .+|.+|+. -+++++.+...|.+. .+++-..||.+....+... .....++++|+|=|.|-..+++
T Consensus 111 g~~~~~~~y~~~~P~~~TR--m~av~~~~~~~~~~~-~vmDTg~AAvlGal~d~~v--~~~~~~~~vniGN~HTlaa~v~ 185 (254)
T PF08735_consen 111 GGRPESFVYADDPPPYFTR--MRAVRESLGGAGYDE-VVMDTGPAAVLGALCDPEV--SSREGIIVVNIGNGHTLAALVK 185 (254)
T ss_pred CCCHHHeeecCCCcHHHHH--HHHHHHHhccCCCCc-eEecCHHHHHhhhhcChhh--hccCCeEEEEeCCccEEEEEEe
Confidence 455667777 88988763 345566666666655 5666666666655544432 3466799999999999888883
Q ss_pred EeCCEEEEEEeeCCCCCChhHHHHHH
Q 043296 218 IEEGIFEVKATAGDTHLGGEDFDNRL 243 (650)
Q Consensus 218 ~~~~~~~v~~~~~~~~lGG~~~d~~l 243 (650)
++.+.=+.......+-...+...|
T Consensus 186 --~~rI~GvfEHHT~~l~~~kL~~~l 209 (254)
T PF08735_consen 186 --DGRIYGVFEHHTGMLTPEKLEEYL 209 (254)
T ss_pred --CCEEEEEEecccCCCCHHHHHHHH
Confidence 444433333333455555444333
No 138
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=66.97 E-value=1.7e+02 Score=30.64 Aligned_cols=115 Identities=15% Similarity=0.116 Sum_probs=61.3
Q ss_pred ecHHHHHHHHHHHHHHHHHHHhc------CCCCcEEEEe-CCCCCHHHH--HHHHHHHHHcCCceeeecchhHHHHHhcc
Q 043296 118 FSPEEISSMVLTKMKEIAEAYLG------HAVKNAVVTV-PAYFNDSQR--QATKDAGAIAGLNVMRIINEPTAAAIAYG 188 (650)
Q Consensus 118 ~~~~~v~~~~L~~l~~~a~~~~~------~~~~~~VitV-Pa~~~~~qr--~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~ 188 (650)
+-|++......+.|....++.+. ..++.+.+|. |.-|+---. ..-+--+...|.+. .=++.-+|-+++-.
T Consensus 40 vvP~~a~r~H~~~l~~~i~~~l~~a~~~~~did~Iavt~GPGl~~~LrVG~~~Ak~LA~a~~~Pl-igV~HlegHi~a~~ 118 (345)
T PTZ00340 40 FLPRETAQHHREHILSLVKEALEEAKITPSDISLICYTKGPGMGAPLSVGAVVARTLSLLWGKPL-VGVNHCVAHIEMGR 118 (345)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcHhhHHHHHHHHHHHHHHcCCCE-eecchHHHHHHHHh
Confidence 45666665555555554444432 2355566666 665554322 11222333344443 33455555444433
Q ss_pred cccccCCCCCceEEEEEeCCcceEEEEEEEeCCEEEEEEeeCCCCCChhHHHH
Q 043296 189 LDKKASRTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDN 241 (650)
Q Consensus 189 ~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~ 241 (650)
+... ...+ |++=+-||+|.+.. ...+.+++++...|. --|+.||+
T Consensus 119 l~~~--~~~P---l~LlVSGGhT~l~~--~~~~~~~ilG~T~Dd-a~Gea~DK 163 (345)
T PTZ00340 119 LVTG--AENP---VVLYVSGGNTQVIA--YSEHRYRIFGETIDI-AVGNCLDR 163 (345)
T ss_pred hccC--CCCC---eEEEEeCCceEEEE--ecCCeEEEEEeeccc-chhHHHHH
Confidence 3221 1123 66777788888776 445778999887754 44677774
No 139
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=66.93 E-value=5.9 Score=43.94 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=19.7
Q ss_pred CCcEEEEEcCcceeEEEEEECC
Q 043296 6 EGKAIGIDLGTTYSCVGVWQND 27 (650)
Q Consensus 6 ~~~vvGID~GTt~s~va~~~~g 27 (650)
+..++|||+|||++++.+++.+
T Consensus 3 ~~~~lgIDiGTt~~Kavl~d~~ 24 (502)
T COG1070 3 MKYVLGIDIGTTSVKAVLFDED 24 (502)
T ss_pred ccEEEEEEcCCCcEEEEEEeCC
Confidence 5689999999999999999755
No 140
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=65.93 E-value=5.3 Score=44.38 Aligned_cols=21 Identities=24% Similarity=0.202 Sum_probs=18.2
Q ss_pred CcEEEEEcCcceeEEEEEECC
Q 043296 7 GKAIGIDLGTTYSCVGVWQND 27 (650)
Q Consensus 7 ~~vvGID~GTt~s~va~~~~g 27 (650)
..++|||+|||++++++++..
T Consensus 2 ~~~lgiDiGTts~Ka~l~d~~ 22 (504)
T PTZ00294 2 KYIGSIDQGTTSTRFIIFDEK 22 (504)
T ss_pred cEEEEEecCCCceEEEEECCC
Confidence 379999999999999999643
No 141
>PRK10331 L-fuculokinase; Provisional
Probab=65.65 E-value=5.1 Score=44.04 Aligned_cols=20 Identities=15% Similarity=0.044 Sum_probs=17.7
Q ss_pred CcEEEEEcCcceeEEEEEEC
Q 043296 7 GKAIGIDLGTTYSCVGVWQN 26 (650)
Q Consensus 7 ~~vvGID~GTt~s~va~~~~ 26 (650)
+.++|||+|||++++++++.
T Consensus 2 ~~~lgID~GTt~~Ka~l~d~ 21 (470)
T PRK10331 2 DVILVLDCGATNVRAIAVDR 21 (470)
T ss_pred ceEEEEecCCCceEEEEEcC
Confidence 47899999999999999963
No 142
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=65.50 E-value=1.7e+02 Score=30.17 Aligned_cols=56 Identities=21% Similarity=0.348 Sum_probs=37.7
Q ss_pred HHHHHHHHhcCCCCCCCCeEEEEcCccCcHHHHHHHHhhhC--CccccccC---CcchhHHhHHHH
Q 043296 321 EPVEKCLRDSKIDKSLVHDIVLVGGSTRIPKVQQLLQDFFN--GKELCKSI---NPDEAVAYGAAV 381 (650)
Q Consensus 321 ~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f~--~~~i~~~~---~p~~ava~GAa~ 381 (650)
+.++.+++.. .++.|+|.||.+...++++.|.+.+. +.++..+. -.|.++++|++=
T Consensus 249 ~~~~~~~~~~-----~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~p~~D~Gi~Ig~ag 309 (314)
T TIGR03723 249 EKTKRALKKT-----GLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPLELCTDNAAMIAAAG 309 (314)
T ss_pred HHHHHHHHHh-----CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCChHHHHHHHHH
Confidence 4444455443 36789999999999999999998872 12333322 346778888763
No 143
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=65.34 E-value=5.5 Score=44.47 Aligned_cols=21 Identities=14% Similarity=0.194 Sum_probs=18.4
Q ss_pred CcEEEEEcCcceeEEEEEECC
Q 043296 7 GKAIGIDLGTTYSCVGVWQND 27 (650)
Q Consensus 7 ~~vvGID~GTt~s~va~~~~g 27 (650)
+.++|||+|||++++++++..
T Consensus 3 ~~~lgID~GTts~Ka~l~d~~ 23 (520)
T PRK10939 3 SYLMALDAGTGSIRAVIFDLN 23 (520)
T ss_pred cEEEEEecCCCceEEEEECCC
Confidence 479999999999999999643
No 144
>PRK00047 glpK glycerol kinase; Provisional
Probab=64.64 E-value=6.1 Score=43.80 Aligned_cols=20 Identities=25% Similarity=0.323 Sum_probs=17.8
Q ss_pred CcEEEEEcCcceeEEEEEEC
Q 043296 7 GKAIGIDLGTTYSCVGVWQN 26 (650)
Q Consensus 7 ~~vvGID~GTt~s~va~~~~ 26 (650)
..++|||+|||++++++++.
T Consensus 5 ~~~lgiD~GTts~Ka~l~d~ 24 (498)
T PRK00047 5 KYILALDQGTTSSRAIIFDH 24 (498)
T ss_pred CEEEEEecCCCceEEEEECC
Confidence 47999999999999999953
No 145
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=64.63 E-value=4.8 Score=41.41 Aligned_cols=19 Identities=26% Similarity=0.440 Sum_probs=17.1
Q ss_pred ceEEEEEeCCcceEEEEEE
Q 043296 199 KNVLIFDLGGGTFDVSLLT 217 (650)
Q Consensus 199 ~~vlV~D~GggT~dvsv~~ 217 (650)
.+++++||||.|||++++.
T Consensus 128 ~~~I~~DmGGTTtDi~~i~ 146 (318)
T TIGR03123 128 PECLFVDMGSTTTDIIPII 146 (318)
T ss_pred CCEEEEEcCccceeeEEec
Confidence 3589999999999999986
No 146
>PRK13331 pantothenate kinase; Reviewed
Probab=63.95 E-value=9.6 Score=37.83 Aligned_cols=28 Identities=14% Similarity=0.258 Sum_probs=24.7
Q ss_pred CCCCCCCcEEEEEcCcceeEEEEEECCe
Q 043296 1 MAAKTEGKAIGIDLGTTYSCVGVWQNDR 28 (650)
Q Consensus 1 M~~~~~~~vvGID~GTt~s~va~~~~g~ 28 (650)
|+......++.||.|+|+++++++++++
T Consensus 1 ~~~~~~~~~L~iDiGNT~~~~g~f~~~~ 28 (251)
T PRK13331 1 MMFHTSNEWLALMIGNSRLHWGYFSGET 28 (251)
T ss_pred CCCCCCCcEEEEEeCCCcEEEEEEECCE
Confidence 7777788899999999999999998654
No 147
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=62.23 E-value=28 Score=26.07 Aligned_cols=41 Identities=15% Similarity=0.227 Sum_probs=31.6
Q ss_pred HHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCce
Q 043296 132 KEIAEAYLGHAVKNAVVTVPAYFNDSQRQATKDAGAIAGLNV 173 (650)
Q Consensus 132 ~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~ 173 (650)
.+..+++.... ....++.|+.++..+|..+.+.|+..||..
T Consensus 5 ~~~i~~F~~s~-~~~~l~f~p~lt~~eR~~vH~~a~~~gL~s 45 (60)
T cd02640 5 RQIIQNYAHSD-DIRDMVFSPEFSKEERALIHQIAQKYGLKS 45 (60)
T ss_pred HHHHHHHHcCC-ccceEEcCCCCCHHHHHHHHHHHHHcCCce
Confidence 33444444332 356889999999999999999999999975
No 148
>PF00814 Peptidase_M22: Glycoprotease family; InterPro: IPR000905 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase (3.4.24.57 from EC) from Pasteurella haemolytica (Mannheimia haemolytica). O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues []. Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 [, ]. Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion [, ]. Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis []. The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2A6A_A 2GEL_G 2GEM_B 1OKJ_B 3ENO_A 3EN9_B 2VWB_B 3ENH_B 2IVO_D 2IVP_A ....
Probab=61.89 E-value=1.4e+02 Score=29.93 Aligned_cols=192 Identities=18% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC------CCCcEEEEe-CCCCCHHHHHHHHHHHHHcCCceeeecchhHHHHHhcccccc
Q 043296 120 PEEISSMVLTKMKEIAEAYLGH------AVKNAVVTV-PAYFNDSQRQATKDAGAIAGLNVMRIINEPTAAAIAYGLDKK 192 (650)
Q Consensus 120 ~~~v~~~~L~~l~~~a~~~~~~------~~~~~VitV-Pa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~ 192 (650)
|+.......+.|....++.+.. .++.+++|+ |..|+.- |-.+--|-.+|-.-.+.++.=++-.++++.....
T Consensus 22 P~~a~r~H~~~L~~~i~~~l~~~~~~~~did~iavt~GPGsftgL-rvG~~~Ak~La~~~~~Pli~v~~l~a~a~~~~~~ 100 (268)
T PF00814_consen 22 PEIASRQHSENLPPLIEELLKEAGISLSDIDAIAVTRGPGSFTGL-RVGLSFAKGLALALNIPLIGVSHLEAHALSARLS 100 (268)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHTS-GGGESEEEEEEESS-HHHH-HHHHHHHHHHHHHTT--EEEEEHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCccccc-HHHHHHHHHHHHHhCCCeEeeccHHHHHHhHhhh
Q ss_pred cCCCCCceEEEEEeCCcceEEE---EEEEeCCEEEEEEeeCCCCCChhHHHHHHHHHH---------HHHHHhh------
Q 043296 193 ASRTGEKNVLIFDLGGGTFDVS---LLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHF---------VAEFRRK------ 254 (650)
Q Consensus 193 ~~~~~~~~vlV~D~GggT~dvs---v~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l---------~~~~~~~------ 254 (650)
.....+ .++++|-|.+.+=.. .++..++.+ ...-|+.+| .+.+.+ .+++..+
T Consensus 101 ~~~~~P-~~~~isa~~~~vy~~~~~~~~~~~~t~--------d~~~ge~~d-k~~~~l~l~~~~g~~le~la~~~~~~~~ 170 (268)
T PF00814_consen 101 EGLKFP-LVLLISAGHTEVYLAEGGDYEILGETL--------DDAIGEAFD-KVARLLGLPYPGGPALEKLASEGEAFKF 170 (268)
T ss_dssp HTEESE-EEEEEECSTCEEEEEETTEEEEECCBS--------SSCHHHHHH-HHHHHTT--SSHHHHHHHHHCT-S----
T ss_pred ccccCc-eEEEEECCCccEEEEEeeEEEeecccc--------ccccHHHHh-hHHHHhccccccCcHHHHHHHhCCccee
Q ss_pred ------cCCCCCccHHHHHHHHHHHHHHHHHccCCCceEEEEcccccCeeEEEEEcHHHHHHHHHH-HHhHHHHHHHHHH
Q 043296 255 ------HKKDISGNARALRRLRTACERAKRTLSSTTQTTIEIDSLYEGIDFYATITRARFEELNMD-LFRKCMEPVEKCL 327 (650)
Q Consensus 255 ------~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~fe~~~~~-~~~~i~~~i~~~l 327 (650)
.............+.++. .++-.-++. +++.+...+..++
T Consensus 171 p~~~~~~~~sFsG~~t~~~~~i~~---------------------------------~~iA~s~q~~~~~~l~~~~~~a~ 217 (268)
T PF00814_consen 171 PRPLKNCDFSFSGLKTAVYRLIEK---------------------------------ADIAASFQEAIADHLAKKAPRAL 217 (268)
T ss_dssp --SEETTEEEEHHHHHHHHHHHHT---------------------------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceeeeeEEEEcccHHHHHHhhh---------------------------------hHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhcCCCCCCCCeEEEEcCccCcHHHHHHHHhhh
Q 043296 328 RDSKIDKSLVHDIVLVGGSTRIPKVQQLLQDFF 360 (650)
Q Consensus 328 ~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f 360 (650)
+..+ +..|+++||-+...+||+.+.+..
T Consensus 218 ~~~~-----~~~lv~~GGVaaN~~lr~~l~~~~ 245 (268)
T PF00814_consen 218 EKPR-----AKSLVVSGGVAANKYLREGLRKLC 245 (268)
T ss_dssp HHHT-----CSEEEEESGGGGHHHHHHHHHHHH
T ss_pred Hhhc-----ccccchHHHHHHHHHHHHHHHHHH
No 149
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=61.20 E-value=1.2e+02 Score=30.16 Aligned_cols=38 Identities=26% Similarity=0.251 Sum_probs=25.3
Q ss_pred cCCceeeecchhHHHHHhcccccccCCCCCceEEEEEeCCc
Q 043296 169 AGLNVMRIINEPTAAAIAYGLDKKASRTGEKNVLIFDLGGG 209 (650)
Q Consensus 169 AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~vlV~D~Ggg 209 (650)
.+++ +.+-|+-.|+|++....... ...++++++-+|.|
T Consensus 96 ~~~p-V~leNDanaaAlaE~~~g~~--~~~~~~v~i~lgtG 133 (256)
T PRK13311 96 IQRE-VRIDNDANCFALSEAWDPEF--RTYPTVLGLILGTG 133 (256)
T ss_pred HCCC-EEEEchhhHHHHHHHHhcCC--CCCCcEEEEEECcC
Confidence 3665 57899999999876543321 23467788777754
No 150
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=60.91 E-value=7.1 Score=41.06 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.0
Q ss_pred CCcEEEEEcCcceeEEEEEECCe
Q 043296 6 EGKAIGIDLGTTYSCVGVWQNDR 28 (650)
Q Consensus 6 ~~~vvGID~GTt~s~va~~~~g~ 28 (650)
|.+++|||+|+|.+++.+++++.
T Consensus 1 m~y~lGIDIGSTsTKaVVmd~~g 23 (432)
T TIGR02259 1 MECFVGIDLGSTTTKAVLMDDKG 23 (432)
T ss_pred CceEEEEEcCchhEEEEEEcCCC
Confidence 45799999999999999998664
No 151
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=60.89 E-value=79 Score=25.79 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=17.0
Q ss_pred HHHHHhHHHHHHHHhcCCCCCC
Q 043296 603 KELEGLCNPIIAKMYQGDGGDV 624 (650)
Q Consensus 603 ~eL~~~~~~i~~r~~e~~~~~~ 624 (650)
++|...++.|..|+........
T Consensus 46 ~eL~~~FeeIa~RFrk~~~~~~ 67 (92)
T PF07820_consen 46 AELQAAFEEIAARFRKGKKKQN 67 (92)
T ss_pred HHHHHHHHHHHHHHhccccccC
Confidence 5688888999999988765433
No 152
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=59.76 E-value=13 Score=34.00 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=0.0
Q ss_pred EEEEEcCcceeEEEEE--ECCeeEEEe
Q 043296 9 AIGIDLGTTYSCVGVW--QNDRVEIIA 33 (650)
Q Consensus 9 vvGID~GTt~s~va~~--~~g~~~ii~ 33 (650)
|+|||.|+++++.|+. .++.+.++.
T Consensus 2 ILGIDPGl~~~G~av~~~~~~~~~~~~ 28 (154)
T cd00529 2 ILGIDPGSRNTGYGVIEQEGRKLIYLA 28 (154)
T ss_pred EEEEccCcCceEEEEEEeeCCeEEEEE
No 153
>PRK04123 ribulokinase; Provisional
Probab=59.61 E-value=8.8 Score=43.15 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=17.6
Q ss_pred CcEEEEEcCcceeEEEEEE
Q 043296 7 GKAIGIDLGTTYSCVGVWQ 25 (650)
Q Consensus 7 ~~vvGID~GTt~s~va~~~ 25 (650)
..++|||+|||++++++++
T Consensus 3 ~~~lgiD~GTts~Ka~l~d 21 (548)
T PRK04123 3 AYVIGLDFGTDSVRALLVD 21 (548)
T ss_pred cEEEEEecCCCceEEEEEE
Confidence 4699999999999999997
No 154
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=58.49 E-value=30 Score=33.29 Aligned_cols=29 Identities=28% Similarity=0.544 Sum_probs=24.4
Q ss_pred CCceEEEEEeCCcceEEEEEEEeCC-EEEE
Q 043296 197 GEKNVLIFDLGGGTFDVSLLTIEEG-IFEV 225 (650)
Q Consensus 197 ~~~~vlV~D~GggT~dvsv~~~~~~-~~~v 225 (650)
+...+|++|+||.++-|.++++.++ .+++
T Consensus 61 E~G~~LalDlGGTnlRv~~V~L~g~~~~~~ 90 (206)
T PF00349_consen 61 EKGDFLALDLGGTNLRVALVELSGNGKVEI 90 (206)
T ss_dssp TEEEEEEEEESSSSEEEEEEEEESSSEEEE
T ss_pred CCceEEEEeecCcEEEEEEEEEcCCCCcee
Confidence 5567999999999999999999876 4443
No 155
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=58.34 E-value=9.1 Score=42.90 Aligned_cols=18 Identities=33% Similarity=0.351 Sum_probs=17.0
Q ss_pred cEEEEEcCcceeEEEEEE
Q 043296 8 KAIGIDLGTTYSCVGVWQ 25 (650)
Q Consensus 8 ~vvGID~GTt~s~va~~~ 25 (650)
.++|||+|||.+++++++
T Consensus 2 ~~lgiD~GTss~Ka~l~d 19 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVD 19 (536)
T ss_pred eEEEEecCCCceEEEEEE
Confidence 589999999999999998
No 156
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=57.92 E-value=11 Score=33.74 Aligned_cols=21 Identities=33% Similarity=0.490 Sum_probs=18.3
Q ss_pred CcEEEEEcCcceeEEEEEECC
Q 043296 7 GKAIGIDLGTTYSCVGVWQND 27 (650)
Q Consensus 7 ~~vvGID~GTt~s~va~~~~g 27 (650)
..++|||+|+..+++|+.++.
T Consensus 4 ~~iLalD~G~kriGvAv~d~~ 24 (138)
T PRK00109 4 GRILGLDVGTKRIGVAVSDPL 24 (138)
T ss_pred CcEEEEEeCCCEEEEEEecCC
Confidence 459999999999999998653
No 157
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=57.81 E-value=37 Score=33.57 Aligned_cols=33 Identities=15% Similarity=0.353 Sum_probs=23.2
Q ss_pred hhhHHhHHHHHHHHHHHhHHHHHHHHH-hhccch
Q 043296 530 KYKAEDEQVKKKVEAKNKLENYAYSMR-NTVKDD 562 (650)
Q Consensus 530 ~~~~~d~~~~~~~~akN~LE~~iy~~r-~~L~~~ 562 (650)
++++.....++|..-.-+|.+-+++|| |+++++
T Consensus 76 kLkes~~~l~dRetEI~eLksQL~RMrEDWIEEE 109 (305)
T PF15290_consen 76 KLKESENRLHDRETEIDELKSQLARMREDWIEEE 109 (305)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566667777788999999999 556654
No 158
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=57.63 E-value=50 Score=35.12 Aligned_cols=21 Identities=33% Similarity=0.387 Sum_probs=18.6
Q ss_pred CCCcEEEEEcCcceeEEEEEE
Q 043296 5 TEGKAIGIDLGTTYSCVGVWQ 25 (650)
Q Consensus 5 ~~~~vvGID~GTt~s~va~~~ 25 (650)
+...++.||||.||.++|++.
T Consensus 73 e~g~~LaiD~GGTnlRvc~V~ 93 (466)
T COG5026 73 ESGSVLAIDLGGTNLRVCLVV 93 (466)
T ss_pred CCCCEEEEecCCceEEEEEEE
Confidence 456899999999999999984
No 159
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=55.44 E-value=1.7e+02 Score=29.55 Aligned_cols=49 Identities=16% Similarity=0.152 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHcCC---CCcCHHHHHHHHHHHHHhHHHHHHHHhcCC
Q 043296 572 DKQKIEKAVDETVEWLDGN---QLAEVDEFEDKLKELEGLCNPIIAKMYQGD 620 (650)
Q Consensus 572 ~~~~i~~~l~e~~~WL~~~---~~a~~~~~~~kl~eL~~~~~~i~~r~~e~~ 620 (650)
-+.++...|+...+-+.+- -..-+.+|..-++.|+.+-+.|-.+...+.
T Consensus 184 ~k~~~t~~le~qk~tv~~Leaev~~~K~~Y~~slrnLE~ISd~IHeeRssqs 235 (426)
T KOG2008|consen 184 LKAKYTVQLEQQKKTVDDLEAEVTLAKGEYKMSLRNLEMISDEIHEERSSQS 235 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhhhh
Confidence 4455555555555544431 112567899999999999999998776644
No 160
>PTZ00107 hexokinase; Provisional
Probab=55.30 E-value=3.2e+02 Score=29.97 Aligned_cols=64 Identities=14% Similarity=0.120 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCC--ceeeecchhHHHHHhcccccccCCCCCceEEEEEeCCcceEEEEE
Q 043296 151 PAYFNDSQRQATKDAGAIAGL--NVMRIINEPTAAAIAYGLDKKASRTGEKNVLIFDLGGGTFDVSLL 216 (650)
Q Consensus 151 Pa~~~~~qr~~l~~Aa~~AGl--~~~~li~Ep~Aaal~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~ 216 (650)
|..-...-.+.+.+|...-|+ +++.++|+.+|..++..+..... .+.+.+=+=+|-||=-+.+.
T Consensus 189 ~~v~G~DV~~lL~~Al~r~~l~v~v~AivNDTVgTL~a~ay~~~~~--~~~~~iGlIlGTG~NacY~E 254 (464)
T PTZ00107 189 DPVEGKDVGELLNDAFKRNNVPANVVAVLNDTVGTLISCAYQKPKN--TPPCQVGVIIGTGSNACYFE 254 (464)
T ss_pred CCccCchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHHHHhcCcCC--CCCceEEEEEeccccceeee
Confidence 445555667888888888787 46789999999888776654210 13344445566665544443
No 161
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=55.21 E-value=9.5 Score=41.86 Aligned_cols=19 Identities=16% Similarity=0.036 Sum_probs=17.2
Q ss_pred cEEEEEcCcceeEEEEEEC
Q 043296 8 KAIGIDLGTTYSCVGVWQN 26 (650)
Q Consensus 8 ~vvGID~GTt~s~va~~~~ 26 (650)
.++|||+|||++++++++.
T Consensus 2 ~ilgiD~GTss~K~~l~d~ 20 (465)
T TIGR02628 2 VILVLDCGATNLRAIAINR 20 (465)
T ss_pred eEEEEecCCCcEEEEEEcC
Confidence 5899999999999999964
No 162
>PRK15027 xylulokinase; Provisional
Probab=54.17 E-value=11 Score=41.77 Aligned_cols=19 Identities=42% Similarity=0.424 Sum_probs=16.9
Q ss_pred cEEEEEcCcceeEEEEEEC
Q 043296 8 KAIGIDLGTTYSCVGVWQN 26 (650)
Q Consensus 8 ~vvGID~GTt~s~va~~~~ 26 (650)
.++|||+|||++++++++.
T Consensus 1 ~~lgID~GTts~Ka~l~d~ 19 (484)
T PRK15027 1 MYIGIDLGTSGVKVILLNE 19 (484)
T ss_pred CEEEEEecccceEEEEEcC
Confidence 3799999999999999964
No 163
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=53.98 E-value=13 Score=33.23 Aligned_cols=21 Identities=24% Similarity=0.203 Sum_probs=18.4
Q ss_pred CcEEEEEcCcceeEEEEEECC
Q 043296 7 GKAIGIDLGTTYSCVGVWQND 27 (650)
Q Consensus 7 ~~vvGID~GTt~s~va~~~~g 27 (650)
..++||||||-.+++|+.+..
T Consensus 2 ~~ilalD~G~KrIGvA~sd~~ 22 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDIL 22 (141)
T ss_pred ceEEEEecCCceEEEEEecCC
Confidence 469999999999999998654
No 164
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=53.45 E-value=87 Score=31.24 Aligned_cols=55 Identities=31% Similarity=0.437 Sum_probs=33.8
Q ss_pred CCCCeEEEEcCccCcHHH----HHHHHhhhCC----cccc--ccCCcchhHHhHHHHHHHHHcCC
Q 043296 335 SLVHDIVLVGGSTRIPKV----QQLLQDFFNG----KELC--KSINPDEAVAYGAAVQAAILSGE 389 (650)
Q Consensus 335 ~~i~~V~LvGG~sr~p~v----~~~l~~~f~~----~~i~--~~~~p~~ava~GAa~~a~~~~~~ 389 (650)
...+.|+|.|-++++|.+ ++.|++.|.. ..+. ...--..-.|.|||+.|.-+.|.
T Consensus 272 ~~pd~iylSGrf~~~~~~~~dv~~~l~d~~s~~g~~~evr~le~~~K~KeaA~GaAiiAnaiAGG 336 (374)
T COG2441 272 TYPDAIYLSGRFSRIPRFFSDVKEKLRDAFSSYGFGIEVRKLESRAKAKEAAEGAAIIANAIAGG 336 (374)
T ss_pred cCcceEEEeeecccccchhhHHHHHHHHHHhhcCccceeehhhhhhhhhhhccchhhhhhhhcch
Confidence 346789999999998765 5555555521 1111 11112234678999988777653
No 165
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=53.09 E-value=12 Score=41.54 Aligned_cols=19 Identities=37% Similarity=0.378 Sum_probs=17.2
Q ss_pred cEEEEEcCcceeEEEEEEC
Q 043296 8 KAIGIDLGTTYSCVGVWQN 26 (650)
Q Consensus 8 ~vvGID~GTt~s~va~~~~ 26 (650)
.++|||+|||++++++++.
T Consensus 2 ~~lgiDiGtt~iKa~l~d~ 20 (493)
T TIGR01311 2 YILAIDQGTTSSRAIVFDK 20 (493)
T ss_pred eEEEEecCCCceEEEEECC
Confidence 5899999999999999963
No 166
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=52.46 E-value=12 Score=41.64 Aligned_cols=19 Identities=32% Similarity=0.555 Sum_probs=16.9
Q ss_pred cEEEEEcCcceeEEEEEEC
Q 043296 8 KAIGIDLGTTYSCVGVWQN 26 (650)
Q Consensus 8 ~vvGID~GTt~s~va~~~~ 26 (650)
.++|||+|||++++++++.
T Consensus 1 ~~lgiDiGtt~~K~~l~d~ 19 (505)
T TIGR01314 1 YMIGVDIGTTSTKAVLFEE 19 (505)
T ss_pred CEEEEeccccceEEEEEcC
Confidence 3799999999999999964
No 167
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=51.08 E-value=94 Score=30.74 Aligned_cols=88 Identities=19% Similarity=0.295 Sum_probs=55.1
Q ss_pred eCCCCCHHHHHHHHHHHHH---cCCceeeecchhHHHHHhcccccccCCCCCceEEEEEeCCcceEEEEEEEeCCEEEEE
Q 043296 150 VPAYFNDSQRQATKDAGAI---AGLNVMRIINEPTAAAIAYGLDKKASRTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVK 226 (650)
Q Consensus 150 VPa~~~~~qr~~l~~Aa~~---AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~ 226 (650)
+|.+|+ .|+.|+.. ++-. ..+++.-.||+..+.++.. ....||+|+|-|.+..+++. .+.+.-+
T Consensus 186 iPe~Ft-----RMraaa~sal~~~t~-av~mDskfaav~gal~dpa-----a~palvVd~GngHttaalvd--edRI~gv 252 (342)
T COG4012 186 IPESFT-----RMRAAAMSALSAGTD-AVAMDSKFAAVMGALVDPA-----ADPALVVDYGNGHTTAALVD--EDRIVGV 252 (342)
T ss_pred CchhHH-----HHHHHHHHHHhcCce-EEEEcchhHhhhhcccCcc-----cCceEEEEccCCceEEEEec--CCeEEEE
Confidence 466665 34444333 3333 4567777777776666553 34789999999999998875 4455444
Q ss_pred EeeCCCCCChhHHHHHHHHHHHHH
Q 043296 227 ATAGDTHLGGEDFDNRLVNHFVAE 250 (650)
Q Consensus 227 ~~~~~~~lGG~~~d~~l~~~l~~~ 250 (650)
.......+.-..|-..|.++..-+
T Consensus 253 ~EHHT~~Lspekled~I~rf~~Ge 276 (342)
T COG4012 253 YEHHTIRLSPEKLEDQIIRFVEGE 276 (342)
T ss_pred eecccccCCHHHHHHHHHHHHhcc
Confidence 444456677766666666555443
No 168
>PLN02295 glycerol kinase
Probab=50.80 E-value=13 Score=41.38 Aligned_cols=19 Identities=26% Similarity=0.228 Sum_probs=16.9
Q ss_pred cEEEEEcCcceeEEEEEEC
Q 043296 8 KAIGIDLGTTYSCVGVWQN 26 (650)
Q Consensus 8 ~vvGID~GTt~s~va~~~~ 26 (650)
.++|||+|||++++++++.
T Consensus 1 ~vlgID~GTts~Ka~l~d~ 19 (512)
T PLN02295 1 FVGAIDQGTTSTRFIIYDR 19 (512)
T ss_pred CEEEEecCCCceEEEEECC
Confidence 4799999999999999963
No 169
>COG4907 Predicted membrane protein [Function unknown]
Probab=50.02 E-value=11 Score=39.69 Aligned_cols=18 Identities=28% Similarity=0.250 Sum_probs=8.3
Q ss_pred eEEEEEeCCcceEEEEEE
Q 043296 200 NVLIFDLGGGTFDVSLLT 217 (650)
Q Consensus 200 ~vlV~D~GggT~dvsv~~ 217 (650)
.+++.-.+-+|+.+..++
T Consensus 172 kv~~~~hp~~~~ev~~Ie 189 (595)
T COG4907 172 KVLVFGHPPLTGEVDKIE 189 (595)
T ss_pred ceeEeecCCccceeeeec
Confidence 344444444455554443
No 170
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=49.78 E-value=15 Score=33.96 Aligned_cols=19 Identities=32% Similarity=0.454 Sum_probs=17.0
Q ss_pred CcEEEEEcCcceeEEEEEE
Q 043296 7 GKAIGIDLGTTYSCVGVWQ 25 (650)
Q Consensus 7 ~~vvGID~GTt~s~va~~~ 25 (650)
..|+|||-|+++++.|+.+
T Consensus 2 m~iLGIDPgl~~tG~avi~ 20 (164)
T PRK00039 2 MRILGIDPGLRRTGYGVIE 20 (164)
T ss_pred CEEEEEccccCceeEEEEE
Confidence 3699999999999999885
No 171
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=49.49 E-value=14 Score=41.40 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=16.4
Q ss_pred EEEEEcCcceeEEEEEEC
Q 043296 9 AIGIDLGTTYSCVGVWQN 26 (650)
Q Consensus 9 vvGID~GTt~s~va~~~~ 26 (650)
++|||+|||++++++++.
T Consensus 2 ~lgID~GTts~Ka~l~d~ 19 (541)
T TIGR01315 2 YIGVDVGTGSARACIIDS 19 (541)
T ss_pred EEEEEecCcCEEEEEEcC
Confidence 799999999999999953
No 172
>PLN02362 hexokinase
Probab=48.20 E-value=25 Score=38.78 Aligned_cols=53 Identities=19% Similarity=0.183 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHcCC--ceeeecchhHHHHHhcccccccCCCCCceEEEEEeCCcceEEEE
Q 043296 157 SQRQATKDAGAIAGL--NVMRIINEPTAAAIAYGLDKKASRTGEKNVLIFDLGGGTFDVSL 215 (650)
Q Consensus 157 ~qr~~l~~Aa~~AGl--~~~~li~Ep~Aaal~y~~~~~~~~~~~~~vlV~D~GggT~dvsv 215 (650)
.-.+.+.+|...-|+ ++..++|+.++..++..+.. +.+.+=+=+|-||=-+.+
T Consensus 206 DVv~lL~~Al~r~~l~v~v~AlvNDTVgTL~a~aY~~------~~~~iG~IlGTGtNacY~ 260 (509)
T PLN02362 206 DVAECLQGALNRRGLDMRVAALVNDTVGTLALGHYHD------PDTVAAVIIGTGTNACYL 260 (509)
T ss_pred hHHHHHHHHHHHcCCCcEEEEEEEcCHHHHHhhhcCC------CCceEEEEEECCccceEe
Confidence 345556666666665 56788999998877655432 234555556666655543
No 173
>PF13941 MutL: MutL protein
Probab=47.45 E-value=15 Score=39.72 Aligned_cols=33 Identities=24% Similarity=0.563 Sum_probs=24.9
Q ss_pred EEEEEcCcceeEEEEEE--CCeeEEEecCCCCcccceEE
Q 043296 9 AIGIDLGTTYSCVGVWQ--NDRVEIIANDQGNRTTPSYV 45 (650)
Q Consensus 9 vvGID~GTt~s~va~~~--~g~~~ii~~~~g~~~~Ps~v 45 (650)
++.+|||||+|++..++ .+..+++-. -..||.|
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig~----a~apTTv 36 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLIGQ----AEAPTTV 36 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEEEE----EeCCCCc
Confidence 68999999999999998 666666642 3455555
No 174
>PLN03184 chloroplast Hsp70; Provisional
Probab=47.36 E-value=2e+02 Score=33.27 Aligned_cols=36 Identities=28% Similarity=0.284 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHcCC----CCcCHHHHHHHHHHHH
Q 043296 571 ADKQKIEKAVDETVEWLDGN----QLAEVDEFEDKLKELE 606 (650)
Q Consensus 571 ~~~~~i~~~l~e~~~WL~~~----~~a~~~~~~~kl~eL~ 606 (650)
+.++++...+..++++|.+. ...+.+++.+.+++++
T Consensus 566 eakN~lE~~iy~~r~~l~e~~~~~~~eer~~l~~~l~~~e 605 (673)
T PLN03184 566 DTKNQADSVVYQTEKQLKELGDKVPADVKEKVEAKLKELK 605 (673)
T ss_pred HHHHhHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHH
Confidence 34555666666666666421 1124455555555554
No 175
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=47.06 E-value=33 Score=31.11 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=17.4
Q ss_pred EEEEEcCcceeEEEEEE--CCeeEEEe
Q 043296 9 AIGIDLGTTYSCVGVWQ--NDRVEIIA 33 (650)
Q Consensus 9 vvGID~GTt~s~va~~~--~g~~~ii~ 33 (650)
|+|||-|+++++.|+.+ ++.+..+.
T Consensus 1 ILGIDPgl~~tG~avi~~~~~~~~~i~ 27 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEEDGGKLRLID 27 (149)
T ss_dssp EEEEE--SSEEEEEEEEEETTEEEEEE
T ss_pred CEEECCCCCCeeEEEEEeeCCEEEEEE
Confidence 79999999999999984 44454443
No 176
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=46.98 E-value=45 Score=37.53 Aligned_cols=44 Identities=32% Similarity=0.593 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHcCCC--------Cc---CHHHHHHHHHHHHHhHHHHHHH
Q 043296 572 DKQKIEKAVDETVEWLDGNQ--------LA---EVDEFEDKLKELEGLCNPIIAK 615 (650)
Q Consensus 572 ~~~~i~~~l~e~~~WL~~~~--------~a---~~~~~~~kl~eL~~~~~~i~~r 615 (650)
+.++....+++.+.|++... .+ ..++...+-++|++.+.||..+
T Consensus 671 ~~~k~~~~~~~a~kw~~~~~~~q~~~~~t~~pv~~~e~~~~~~~l~~~~~~i~~~ 725 (727)
T KOG0103|consen 671 EMEKVLLEIEEAEKWLERKSNKQNKLSKTADPVPSSEIESEAKELNNTCSDIISK 725 (727)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCchHHHHHhhhhhcccccccccc
Confidence 67788888999999998641 12 2388999999999999998764
No 177
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=46.65 E-value=53 Score=32.85 Aligned_cols=48 Identities=27% Similarity=0.210 Sum_probs=36.0
Q ss_pred CCCCCeEEEEcCccCcHHHHHHHHhhhC---CccccccCCcchhHHhHHHH
Q 043296 334 KSLVHDIVLVGGSTRIPKVQQLLQDFFN---GKELCKSINPDEAVAYGAAV 381 (650)
Q Consensus 334 ~~~i~~V~LvGG~sr~p~v~~~l~~~f~---~~~i~~~~~p~~ava~GAa~ 381 (650)
+..+|.|+|+||.++...+-+.|.+... ..-+.-..+-.+|.|.|+..
T Consensus 294 ~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~PGE~EleALA~G~lR 344 (358)
T COG3426 294 KGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYPGEDELEALAEGALR 344 (358)
T ss_pred CCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEecCCchHHHHHHhhhHH
Confidence 4579999999999999999999988752 12233344566788888854
No 178
>PRK13881 conjugal transfer protein TrbI; Provisional
Probab=46.63 E-value=86 Score=33.68 Aligned_cols=40 Identities=10% Similarity=0.262 Sum_probs=30.7
Q ss_pred cCHHHHHHHHHHHHHHHHHHcCCC-CcCHHHHHHHHHHHHH
Q 043296 568 LAAADKQKIEKAVDETVEWLDGNQ-LAEVDEFEDKLKELEG 607 (650)
Q Consensus 568 ~~~~~~~~i~~~l~e~~~WL~~~~-~a~~~~~~~kl~eL~~ 607 (650)
..+..|++....+.++..-++... ......|+++|..|+.
T Consensus 176 ~~~~~~~e~la~~a~~~~~~~~~~~~d~~~~y~~~l~~~~~ 216 (472)
T PRK13881 176 GTPQTRDEMLARIAAVRQQIDAQRSNDPTAAYQARLAQLRG 216 (472)
T ss_pred CCCCchHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHHHHh
Confidence 456678888888888888888653 3367789999988864
No 179
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=46.49 E-value=78 Score=32.11 Aligned_cols=49 Identities=22% Similarity=0.170 Sum_probs=32.7
Q ss_pred CCCeEEEEcCccCcHHHHHHHHhhhCC------ccccccCCcchhHHhHHHHHHH
Q 043296 336 LVHDIVLVGGSTRIPKVQQLLQDFFNG------KELCKSINPDEAVAYGAAVQAA 384 (650)
Q Consensus 336 ~i~~V~LvGG~sr~p~v~~~l~~~f~~------~~i~~~~~p~~ava~GAa~~a~ 384 (650)
+++.|+|-|+.+..+.+.+.+++.+.. .++......+.+.+.|||..+.
T Consensus 233 dpe~IvlgG~~~~~~~~~~~i~~~l~~~~~~~~~~i~~s~~~~~~~~~GAa~~~~ 287 (291)
T PRK05082 233 DCQCVVLGGSVGLAEGYLELVQAYLAQEPAIYHVPLLAAHYRHDAGLLGAALWAQ 287 (291)
T ss_pred CCCEEEEcCccccHHHHHHHHHHHHHhcccccCCeEEECccCCchhhhhHHHHhc
Confidence 467899988887777666667665521 1233344456788999998764
No 180
>PF09921 DUF2153: Uncharacterized protein conserved in archaea (DUF2153); InterPro: IPR014450 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=46.31 E-value=2e+02 Score=24.96 Aligned_cols=98 Identities=15% Similarity=0.177 Sum_probs=68.7
Q ss_pred HHHHHHhhhhHHhHHHHH--HHHHHHhHHHHHHHHHhhccchhhhcccCHHHHHHHHHHHHHHHHHHcCCCCcCHHHHHH
Q 043296 523 RMVQEAEKYKAEDEQVKK--KVEAKNKLENYAYSMRNTVKDDKVAGKLAAADKQKIEKAVDETVEWLDGNQLAEVDEFED 600 (650)
Q Consensus 523 ~~~~~~~~~~~~d~~~~~--~~~akN~LE~~iy~~r~~L~~~~~~~~~~~~~~~~i~~~l~e~~~WL~~~~~a~~~~~~~ 600 (650)
.+.+..++++..|+...- ...|.+.+...|...-+.|+++-....++.+-...+.+.+-++-.=|-+-.=.-+++|.+
T Consensus 15 ~~~~~e~~~~~~DRL~LIl~sr~afqhm~RTlKaFd~WLqdP~ItshMPreML~dv~~~~~~il~~llelDI~HTS~~rd 94 (126)
T PF09921_consen 15 TFKKHEKNVESADRLDLILSSRAAFQHMMRTLKAFDQWLQDPMITSHMPREMLEDVWETLREILEQLLELDIRHTSQFRD 94 (126)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHhcCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 334444555566664433 355788888889999999999888888998888888887777655554322235678888
Q ss_pred HHHHHH--HhHHHHHHHHhcCC
Q 043296 601 KLKELE--GLCNPIIAKMYQGD 620 (650)
Q Consensus 601 kl~eL~--~~~~~i~~r~~e~~ 620 (650)
-+..|. ..++||+..+.++.
T Consensus 95 ll~kl~kEGkl~pll~~~~~~~ 116 (126)
T PF09921_consen 95 LLKKLAKEGKLNPLLWLYKQQG 116 (126)
T ss_pred HHHHHHHcCCCCHHHHhhcccc
Confidence 888876 46789998877644
No 181
>PLN02669 xylulokinase
Probab=46.19 E-value=21 Score=40.23 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=19.7
Q ss_pred CCCCcEEEEEcCcceeEEEEEEC
Q 043296 4 KTEGKAIGIDLGTTYSCVGVWQN 26 (650)
Q Consensus 4 ~~~~~vvGID~GTt~s~va~~~~ 26 (650)
+....++|||+||+.+++++++.
T Consensus 5 ~~~~~~LGiD~GT~s~Ka~l~d~ 27 (556)
T PLN02669 5 PEDSLFLGFDSSTQSLKATVLDS 27 (556)
T ss_pred CCCCeEEEEecccCCeEEEEEcC
Confidence 45678999999999999999963
No 182
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=45.82 E-value=85 Score=33.69 Aligned_cols=46 Identities=26% Similarity=0.320 Sum_probs=32.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCeEEEEcCccCcHHHH
Q 043296 308 FEELNMDLFRKCMEPVEKCLRDSKIDKSLVHDIVLVGGSTRIPKVQ 353 (650)
Q Consensus 308 fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~ 353 (650)
++++-+-+++.+..++.+.+.++++++.+|..++++|-++..-.+.
T Consensus 55 ~~~L~~~i~~~i~~li~~l~~~~gi~~~~I~~i~i~GNt~M~hLll 100 (412)
T PF14574_consen 55 LEELQRLIRETINELIEELLEKAGISPEDIYEIVIVGNTTMLHLLL 100 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT--GGGEEEEEEEE-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHeEEEEEEecHHHHHHHc
Confidence 3445556677888889999999999999999999999655444433
No 183
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=45.57 E-value=85 Score=23.46 Aligned_cols=28 Identities=14% Similarity=0.241 Sum_probs=25.8
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCce
Q 043296 146 AVVTVPAYFNDSQRQATKDAGAIAGLNV 173 (650)
Q Consensus 146 ~VitVPa~~~~~qr~~l~~Aa~~AGl~~ 173 (650)
..+..|+.++..||..+.+.|+..||..
T Consensus 18 ~~l~F~p~ls~~eR~~vH~lA~~~gL~s 45 (60)
T cd02641 18 TELEFPPTLSSHDRLLVHELAEELGLRH 45 (60)
T ss_pred CcEECCCCCCHHHHHHHHHHHHHcCCce
Confidence 5789999999999999999999999865
No 184
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=45.34 E-value=3.8e+02 Score=27.92 Aligned_cols=217 Identities=15% Similarity=0.214 Sum_probs=105.0
Q ss_pred EecHHHHHHHHHHHHHHHHHHHhc---C---CCCcEEEEeCCCCCHHHHHHH---HHHHHHcCCceeeecchhHHHHHhc
Q 043296 117 RFSPEEISSMVLTKMKEIAEAYLG---H---AVKNAVVTVPAYFNDSQRQAT---KDAGAIAGLNVMRIINEPTAAAIAY 187 (650)
Q Consensus 117 ~~~~~~v~~~~L~~l~~~a~~~~~---~---~~~~~VitVPa~~~~~qr~~l---~~Aa~~AGl~~~~li~Ep~Aaal~y 187 (650)
.+-||..+....+.+-...++.+. . .++-+.+|.=..-...=+--. +..+...+. .+.=++...+-.+.-
T Consensus 40 GVvPe~Asr~H~e~i~~li~~al~eA~~~~~dID~IA~T~gPGL~gaL~VG~~~Ak~LA~a~~k-Pli~VnH~~gHi~a~ 118 (342)
T COG0533 40 GVVPELASRHHVENIPPLIEEALAEAGVSLEDIDAIAVTAGPGLGGALLVGATAAKALALALNK-PLIPVNHLEGHIEAA 118 (342)
T ss_pred CcCccHHHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEecCCCchhHHHHHHHHHHHHHHHhCC-CEeecchHHHHHHHH
Confidence 366888888888887766665542 2 344445555333333222111 111222222 234455555544433
Q ss_pred ccccccCCCCCceEEEEEeCCcceEEEEEEEeC-CEEEEEEeeCCCCCChhHHHHHHHHHHHHHHHhhcCCCCCccHHHH
Q 043296 188 GLDKKASRTGEKNVLIFDLGGGTFDVSLLTIEE-GIFEVKATAGDTHLGGEDFDNRLVNHFVAEFRRKHKKDISGNARAL 266 (650)
Q Consensus 188 ~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~-~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~ 266 (650)
.+.... ....+..=+-||.|.+..++ + +.++++...-|..+ |+.||+ ++++ .+......| .
T Consensus 119 ~l~~~~----~~p~v~LlVSGGHTqli~~~--~~g~y~ilGeTlDdA~-Gea~DK-vAR~--------lGL~yPGGp-~- 180 (342)
T COG0533 119 RLETGL----AFPPVALLVSGGHTQLIAVR--GIGRYEVLGETLDDAA-GEAFDK-VARL--------LGLGYPGGP-A- 180 (342)
T ss_pred HhccCC----CCCcEEEEEecCceEEEEEc--CCCcEEEEeeechhhh-hHHHHH-HHHH--------hCCCCCCcH-H-
Confidence 332221 12234444456666655444 4 67888887765443 566663 2222 233333333 1
Q ss_pred HHHHHHHHHHHH---HccCCC--c--eEEEEccccc--------CeeEEEEEcHHHHHHHHHH----HHhHHHHHHHHHH
Q 043296 267 RRLRTACERAKR---TLSSTT--Q--TTIEIDSLYE--------GIDFYATITRARFEELNMD----LFRKCMEPVEKCL 327 (650)
Q Consensus 267 ~~L~~~~e~~K~---~ls~~~--~--~~~~i~~~~~--------~~~~~~~itr~~fe~~~~~----~~~~i~~~i~~~l 327 (650)
+-+.|++... .|.... . ..+++..+.. ... ...+..++.+++|.. .++-+++..++++
T Consensus 181 --Ie~lA~~G~~~~~~fP~~~~~~~~~DfSFSGLkTa~~~~~~~~~~-~~~~~~~d~~dia~sfQ~av~~~L~~kt~rAl 257 (342)
T COG0533 181 --IEKLAKKGDPDAFEFPRPMVKGKNLDFSFSGLKTAVLRLLKKLKQ-KEELNEEDKEDIAASFQEAVFDMLVEKTERAL 257 (342)
T ss_pred --HHHHHhcCCCCceeCCccccCCCCcceehHhHHHHHHHHHHhccc-ccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122222211 111100 0 1111111100 000 012334444445443 4555566677777
Q ss_pred HhcCCCCCCCCeEEEEcCccCcHHHHHHHHhhh
Q 043296 328 RDSKIDKSLVHDIVLVGGSTRIPKVQQLLQDFF 360 (650)
Q Consensus 328 ~~~~~~~~~i~~V~LvGG~sr~p~v~~~l~~~f 360 (650)
+..+ .+.++++||-+....+|+++++..
T Consensus 258 ~~~~-----~~~lvi~GGVaaN~~LR~~l~~~~ 285 (342)
T COG0533 258 KHTG-----KKELVIAGGVAANSRLREMLEEMC 285 (342)
T ss_pred HHhC-----CCEEEEeccHHHhHHHHHHHHHHH
Confidence 7755 567999999999999999999876
No 185
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=45.19 E-value=52 Score=35.02 Aligned_cols=31 Identities=32% Similarity=0.692 Sum_probs=25.1
Q ss_pred CCCceEEEEEeCCcceEEEEEEEe-CCEEEEE
Q 043296 196 TGEKNVLIFDLGGGTFDVSLLTIE-EGIFEVK 226 (650)
Q Consensus 196 ~~~~~vlV~D~GggT~dvsv~~~~-~~~~~v~ 226 (650)
.+...+|++|+||..+-+++|++. ++.+++.
T Consensus 72 ~e~g~~LaiD~GGTnlRvc~V~l~g~gt~~~~ 103 (466)
T COG5026 72 NESGSVLAIDLGGTNLRVCLVVLGGDGTFDIE 103 (466)
T ss_pred CCCCCEEEEecCCceEEEEEEEeCCCCCcccc
Confidence 356789999999999999999998 4555443
No 186
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=44.44 E-value=1.3e+02 Score=24.55 Aligned_cols=67 Identities=19% Similarity=0.325 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhhhhH--HhHHHHHHHHHHHhHHHHHHHHHhhccchhhhcccCHHHHHHHHHHHHHHHHHHcCCC
Q 043296 519 EDIERMVQEAEKYKA--EDEQVKKKVEAKNKLENYAYSMRNTVKDDKVAGKLAAADKQKIEKAVDETVEWLDGNQ 591 (650)
Q Consensus 519 ~e~~~~~~~~~~~~~--~d~~~~~~~~akN~LE~~iy~~r~~L~~~~~~~~~~~~~~~~i~~~l~e~~~WL~~~~ 591 (650)
+++..++..++.+.. .+.-.....+++..+++.+..+|+.+.+- ...-+++..+....+++|+.+++
T Consensus 5 ~~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~------~~~~~~~~~~~~~~~~~~V~e~P 73 (94)
T PF05957_consen 5 AELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDA------ADQAREQAREAAEQTEDYVRENP 73 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHCh
Confidence 456666666665542 24444556777888888888888887651 23345666777777778777764
No 187
>KOG3759 consensus Uncharacterized RUN domain protein [Signal transduction mechanisms]
Probab=44.43 E-value=3.6e+02 Score=28.95 Aligned_cols=26 Identities=19% Similarity=0.381 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhcCC
Q 043296 595 VDEFEDKLKELEGLCNPIIAKMYQGD 620 (650)
Q Consensus 595 ~~~~~~kl~eL~~~~~~i~~r~~e~~ 620 (650)
.+.++.++.+|+..++=+..-..|..
T Consensus 229 V~QLkTQItDLErFInFlQ~e~~e~s 254 (621)
T KOG3759|consen 229 VDQLKTQITDLERFINFLQDEVGENS 254 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 35566667777777777776666633
No 188
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=43.93 E-value=61 Score=23.97 Aligned_cols=41 Identities=17% Similarity=0.312 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCce
Q 043296 130 KMKEIAEAYLGHAVKNAVVTVPAYFNDSQRQATKDAGAIAGLNV 173 (650)
Q Consensus 130 ~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~ 173 (650)
.+++..+.++... .-.++.|+ .+..+|..+.+.|...||..
T Consensus 3 ~i~~~i~~F~~~~--~~~~~fpp-m~~~~R~~vH~lA~~~~L~S 43 (58)
T cd02646 3 DIKDEIEAFLLDS--RDSLSFPP-MDKHGRKTIHKLANCYNLKS 43 (58)
T ss_pred HHHHHHHHHHhCC--CceEecCC-CCHHHHHHHHHHHHHcCCcc
Confidence 3444445554433 34678999 89999999999999998864
No 189
>PRK13318 pantothenate kinase; Reviewed
Probab=43.79 E-value=24 Score=35.25 Aligned_cols=20 Identities=25% Similarity=0.664 Sum_probs=17.9
Q ss_pred EEEEEcCcceeEEEEEECCe
Q 043296 9 AIGIDLGTTYSCVGVWQNDR 28 (650)
Q Consensus 9 vvGID~GTt~s~va~~~~g~ 28 (650)
+++||+|.|++++++++++.
T Consensus 2 iL~IDIGnT~iK~al~d~g~ 21 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEGGK 21 (258)
T ss_pred EEEEEECCCcEEEEEEECCE
Confidence 78999999999999998654
No 190
>PRK13321 pantothenate kinase; Reviewed
Probab=43.13 E-value=26 Score=35.01 Aligned_cols=20 Identities=40% Similarity=0.624 Sum_probs=17.9
Q ss_pred EEEEEcCcceeEEEEEECCe
Q 043296 9 AIGIDLGTTYSCVGVWQNDR 28 (650)
Q Consensus 9 vvGID~GTt~s~va~~~~g~ 28 (650)
+++||+|.|++++++++++.
T Consensus 2 iL~IDIGnT~ik~gl~~~~~ 21 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGDR 21 (256)
T ss_pred EEEEEECCCeEEEEEEECCE
Confidence 68999999999999998663
No 191
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=43.11 E-value=63 Score=31.90 Aligned_cols=73 Identities=19% Similarity=0.250 Sum_probs=46.4
Q ss_pred eEEEEEeCCcceEEEEEEEeC-CEEE----------------------EEEeeCCCCCChhHHHHHHHHHHHHHHHhhcC
Q 043296 200 NVLIFDLGGGTFDVSLLTIEE-GIFE----------------------VKATAGDTHLGGEDFDNRLVNHFVAEFRRKHK 256 (650)
Q Consensus 200 ~vlV~D~GggT~dvsv~~~~~-~~~~----------------------v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~ 256 (650)
++|++|+|.||.|+-.+.-.. +.+. -+.-. +...||--.+.++..|+.. +
T Consensus 2 kila~DvG~GTqDi~~~d~~~EnSl~mVmPspt~~~A~R~R~~~~~g~~l~l~-G~~MGGGp~travrrhlk~------G 74 (342)
T COG4012 2 KILAIDVGVGTQDIVAYDGDPENSLRMVMPSPTSTLAQRLRFMLREGPYLALI-GVPMGGGPTTRAVRRHLKK------G 74 (342)
T ss_pred ceEEEEecCCceeEEEecCCcccceeEeecCchHHHHHHHHHHhccCCcEEEE-eeecCCChhhHHHHHHHhc------C
Confidence 479999999999998876431 1111 11112 2568899999999888743 2
Q ss_pred CCCCccHHHHHHHHHHHHHHHHH
Q 043296 257 KDISGNARALRRLRTACERAKRT 279 (650)
Q Consensus 257 ~~~~~~~~~~~~L~~~~e~~K~~ 279 (650)
..+-..+.+...+.+..|+++..
T Consensus 75 ~rVyatedAAlT~hddleRv~em 97 (342)
T COG4012 75 TRVYATEDAALTLHDDLERVEEM 97 (342)
T ss_pred CeeEechhhhhhhhcCHHHHHhh
Confidence 33334455566666666766653
No 192
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=40.26 E-value=1.6e+02 Score=22.31 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=30.9
Q ss_pred HHHHhHHHHHHHHHhhccchhhhcccCHHHHHHHHHHHHHHHH
Q 043296 543 EAKNKLENYAYSMRNTVKDDKVAGKLAAADKQKIEKAVDETVE 585 (650)
Q Consensus 543 ~akN~LE~~iy~~r~~L~~~~~~~~~~~~~~~~i~~~l~e~~~ 585 (650)
.-...++..|-.+..+|.++.|....+++-++.-+..+.++..
T Consensus 11 Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~ 53 (66)
T PF10458_consen 11 KELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEE 53 (66)
T ss_dssp HHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHH
Confidence 3445677778888899988888888888777777766665544
No 193
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=39.12 E-value=20 Score=31.71 Aligned_cols=17 Identities=29% Similarity=0.362 Sum_probs=15.1
Q ss_pred EEEEcCcceeEEEEEEC
Q 043296 10 IGIDLGTTYSCVGVWQN 26 (650)
Q Consensus 10 vGID~GTt~s~va~~~~ 26 (650)
+|||+|+..+++|+.++
T Consensus 1 laiD~G~kriGvA~~d~ 17 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQDI 17 (130)
T ss_pred CeEccCCCeEEEEEECC
Confidence 59999999999998755
No 194
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=38.78 E-value=75 Score=29.74 Aligned_cols=16 Identities=19% Similarity=0.133 Sum_probs=7.7
Q ss_pred HHHHHHhHHHHHHHHH
Q 043296 541 KVEAKNKLENYAYSMR 556 (650)
Q Consensus 541 ~~~akN~LE~~iy~~r 556 (650)
+.++.+.+++|+.+..
T Consensus 22 ~~e~l~~Y~e~f~d~~ 37 (181)
T PF08006_consen 22 REEILEYYEEYFDDAG 37 (181)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3444555555554433
No 195
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=38.60 E-value=62 Score=24.24 Aligned_cols=29 Identities=17% Similarity=0.273 Sum_probs=25.9
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCce
Q 043296 145 NAVVTVPAYFNDSQRQATKDAGAIAGLNV 173 (650)
Q Consensus 145 ~~VitVPa~~~~~qr~~l~~Aa~~AGl~~ 173 (650)
.-.++.|+.+++.+|+.+...|...||..
T Consensus 17 ~~eL~Fp~~ls~~eRriih~la~~lGL~~ 45 (60)
T cd02639 17 RDELAFPSSLSPAERRIVHLLASRLGLNH 45 (60)
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHcCCce
Confidence 44777899999999999999999999965
No 196
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=37.91 E-value=49 Score=34.78 Aligned_cols=46 Identities=24% Similarity=0.103 Sum_probs=32.1
Q ss_pred CCCeEEEEcCccCcHHHHHHHHhhhCCc-cccc--cCCcchhHHhHHHH
Q 043296 336 LVHDIVLVGGSTRIPKVQQLLQDFFNGK-ELCK--SINPDEAVAYGAAV 381 (650)
Q Consensus 336 ~i~~V~LvGG~sr~p~v~~~l~~~f~~~-~i~~--~~~p~~ava~GAa~ 381 (650)
+++.|++.||.+..+.+++.|.+.+... ++.. ..+-.++.|.||..
T Consensus 293 ~pD~IV~gGGI~e~~~l~~~I~~~l~~~a~v~~~pg~~e~~ala~ga~r 341 (351)
T TIGR02707 293 KVDAIVLTGGLAYSKYFVSEIIKRVSFIAPVLVYPGEDEMEALAEGALR 341 (351)
T ss_pred CCCEEEEcchhhcCHHHHHHHHHHHHhhCCEEEeCCcHHHHHHHHhHHH
Confidence 5789999999999999999998877322 3322 22334577777753
No 197
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=36.88 E-value=61 Score=35.24 Aligned_cols=66 Identities=12% Similarity=0.163 Sum_probs=47.7
Q ss_pred EeCCCCCHHHHHHHHHHHHHcCCc---eeeecchhHHHHHhcccccccCCCCCceEEEEEeCCcceEEEEEEEeC
Q 043296 149 TVPAYFNDSQRQATKDAGAIAGLN---VMRIINEPTAAAIAYGLDKKASRTGEKNVLIFDLGGGTFDVSLLTIEE 220 (650)
Q Consensus 149 tVPa~~~~~qr~~l~~Aa~~AGl~---~~~li~Ep~Aaal~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~ 220 (650)
.++......--+.+.+|.+.-|+. +..++|..++.-++..+.. +++++=+=+|.||--+.+.+...
T Consensus 184 ~~~~~~g~Dvv~~L~eal~rr~~~~i~V~AlvNDTvGtl~~~~y~~------~~~~igvI~GTGtNacY~e~~~~ 252 (474)
T KOG1369|consen 184 KATDCEGEDVVRLLREAIKRRGLFDMDVVAVVNDTVGTLMTCAYED------PNCEIGVIFGTGTNACYMEDMRN 252 (474)
T ss_pred cchhhhcchHHHHHHHHHHHcCCcceEEEEEEecCHHhHhhceecC------CCcEEEEEECCCccceeeeeccc
Confidence 334444555577888899888885 6778999999877665543 45777777899988877777653
No 198
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=36.74 E-value=13 Score=39.95 Aligned_cols=53 Identities=26% Similarity=0.360 Sum_probs=40.9
Q ss_pred CCCCeEEEEcCccCcHHHHHHHHhhhCC-----cc---------ccccCCcchhHHhHHHHHHHHHc
Q 043296 335 SLVHDIVLVGGSTRIPKVQQLLQDFFNG-----KE---------LCKSINPDEAVAYGAAVQAAILS 387 (650)
Q Consensus 335 ~~i~~V~LvGG~sr~p~v~~~l~~~f~~-----~~---------i~~~~~p~~ava~GAa~~a~~~~ 387 (650)
.-.+.|.+|||+...|.+...|++..-+ .+ .-+..||...+=+|||+++..-.
T Consensus 525 Kl~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~VaWKGaaIla~l~~ 591 (618)
T KOG0797|consen 525 KLFSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQFVAWKGAAILAILDF 591 (618)
T ss_pred hhhhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchheEecchhhhhHHHH
Confidence 3467899999999999999999987621 11 12346888888899999987655
No 199
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=36.74 E-value=1.6e+02 Score=27.16 Aligned_cols=88 Identities=22% Similarity=0.317 Sum_probs=50.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCCCCHH---------------H-HHHHHHHHHHcCCceeeecchhHH
Q 043296 119 SPEEISSMVLTKMKEIAEAYLGHAVKNAVVTVPAYFNDS---------------Q-RQATKDAGAIAGLNVMRIINEPTA 182 (650)
Q Consensus 119 ~~~~v~~~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~---------------q-r~~l~~Aa~~AGl~~~~li~Ep~A 182 (650)
++++++..+.+.+.+.....-.. .+.|++|...+.. . .+.+.+ ..+++ +.+.++-.|
T Consensus 31 ~~~~~~~~l~~~i~~~~~~~~~~---gIgi~~pG~v~~~~g~i~~~~~~~~~~~~l~~~l~~---~~~~p-v~i~Nd~~~ 103 (179)
T PF00480_consen 31 SPEELLDALAELIERLLADYGRS---GIGISVPGIVDSEKGRIISSPNPGWENIPLKEELEE---RFGVP-VIIENDANA 103 (179)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTCE---EEEEEESSEEETTTTEEEECSSGTGTTCEHHHHHHH---HHTSE-EEEEEHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhcccc---cEEEeccccCcCCCCeEEecCCCCcccCCHHHHhhc---ccceE-EEEecCCCc
Confidence 56777776666666655543211 4555555443322 1 223332 33554 588999999
Q ss_pred HHHhcccccccCCCCCceEEEEEeCCcceEEEEE
Q 043296 183 AAIAYGLDKKASRTGEKNVLIFDLGGGTFDVSLL 216 (650)
Q Consensus 183 aal~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~ 216 (650)
+|++....... ...++++++-+|-| +-.+++
T Consensus 104 ~a~ae~~~~~~--~~~~~~~~l~ig~G-iG~~ii 134 (179)
T PF00480_consen 104 AALAEYWFGAA--KDCDNFLYLYIGTG-IGAGII 134 (179)
T ss_dssp HHHHHHHHSTT--TTTSSEEEEEESSS-EEEEEE
T ss_pred ceeehhhcCcc--CCcceEEEEEeecC-CCccee
Confidence 99887553332 23567888888875 455554
No 200
>PLN02902 pantothenate kinase
Probab=36.71 E-value=2.2e+02 Score=33.44 Aligned_cols=50 Identities=14% Similarity=-0.038 Sum_probs=33.1
Q ss_pred CCCCeEEEEcCccCc-HHHHHHHHh---hh--CCccccccCCcchhHHhHHHHHHH
Q 043296 335 SLVHDIVLVGGSTRI-PKVQQLLQD---FF--NGKELCKSINPDEAVAYGAAVQAA 384 (650)
Q Consensus 335 ~~i~~V~LvGG~sr~-p~v~~~l~~---~f--~~~~i~~~~~p~~ava~GAa~~a~ 384 (650)
..++.|+++|.+-|- |...+.|.. ++ +..+....-+-...-|+||.+...
T Consensus 345 ~~ikrIvF~G~fIr~h~~tm~~ls~Ai~fwSkg~~~a~FlrHeGylGAlGafl~~~ 400 (876)
T PLN02902 345 FGLKRIFFGGFFIRGHAYTMDTISFAVHFWSKGEAQAMFLRHEGFLGALGAFMSYE 400 (876)
T ss_pred cCCCEEEEecceecCCcchHHHHHHHHHHhcCCceEEEEecccchhHHHHHHhcCC
Confidence 458899999998664 333444443 33 334566666777899999987654
No 201
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=36.14 E-value=2.9e+02 Score=26.99 Aligned_cols=37 Identities=30% Similarity=0.524 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHHhHHH
Q 043296 571 ADKQKIEKAVDETVEWLDGNQLAEVDEFEDKLKELEGLCNP 611 (650)
Q Consensus 571 ~~~~~i~~~l~e~~~WL~~~~~a~~~~~~~kl~eL~~~~~~ 611 (650)
.+..++.+..-....||+++ ...+++++++++++.+.
T Consensus 215 ~qi~Kilnah~~sLqwl~d~----st~~e~k~d~i~K~~~~ 251 (254)
T KOG2196|consen 215 IQIEKILNAHMDSLQWLDDN----STQLEKKLDKIKKLKDD 251 (254)
T ss_pred HHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHhhhcc
Confidence 35566666666777899875 45677788888877653
No 202
>PLN02377 3-ketoacyl-CoA synthase
Probab=35.86 E-value=99 Score=34.16 Aligned_cols=54 Identities=4% Similarity=0.146 Sum_probs=42.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCeEEE-EcCccCcHHHHHHHHhhhC
Q 043296 308 FEELNMDLFRKCMEPVEKCLRDSKIDKSLVHDIVL-VGGSTRIPKVQQLLQDFFN 361 (650)
Q Consensus 308 fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~L-vGG~sr~p~v~~~l~~~f~ 361 (650)
++...++..+=+...++++|+++++++.+|+.|+. +.+....|.+--+|.+.+|
T Consensus 165 ~~~~~~ea~~l~~~A~~~aL~kaGi~p~dID~LVv~cS~~~~~PSlaa~V~~~LG 219 (502)
T PLN02377 165 MAAAREEAEQVMFGALDNLFANTNVNPKDIGILVVNCSLFNPTPSLSAMIVNKYK 219 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCcHHHHHHHHhC
Confidence 44444455555667888999999999999999987 4455568999999999994
No 203
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=35.79 E-value=6.6e+02 Score=27.97 Aligned_cols=82 Identities=21% Similarity=0.212 Sum_probs=53.8
Q ss_pred EEcHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCeEEEEcCccCcHHHH-HHHHhhhCCcccc-ccCCcchhHHhHH
Q 043296 302 TITRARFEELNMDLFRKCMEPVEKCLRDSKIDKSLVHDIVLVGGSTRIPKVQ-QLLQDFFNGKELC-KSINPDEAVAYGA 379 (650)
Q Consensus 302 ~itr~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~p~v~-~~l~~~f~~~~i~-~~~~p~~ava~GA 379 (650)
.....++...++..+++++-.+-+-+.+... ...+.+.||....-..- +.|.+-+ ...+. .+.-.|.-.|.||
T Consensus 255 ~~~~~diAasaQ~~lE~l~l~~~~~~~~~~g----~~~L~~AGGVAlNv~~N~~~l~~~~-f~dlfV~Pa~gD~G~AvGA 329 (555)
T COG2192 255 TERAADIAASAQAYLEELVLEMLRYLREETG----EDNLALAGGVALNVKANGKLLRRGL-FEDLFVQPAMGDAGLAVGA 329 (555)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhC----ccceEEccceeeeeeehHhHhhccc-CceeEecCCCCCcchHHHH
Confidence 4445566666677777776666555554321 56799999988766665 5565555 33444 4444567899999
Q ss_pred HHHHHHHcC
Q 043296 380 AVQAAILSG 388 (650)
Q Consensus 380 a~~a~~~~~ 388 (650)
|+++....+
T Consensus 330 Al~~~~~~~ 338 (555)
T COG2192 330 ALAVKRELG 338 (555)
T ss_pred HHHHHHHhc
Confidence 999886654
No 204
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=35.53 E-value=2.3e+02 Score=32.58 Aligned_cols=16 Identities=13% Similarity=0.046 Sum_probs=6.9
Q ss_pred HHhHHHHHHHHHhhcc
Q 043296 545 KNKLENYAYSMRNTVK 560 (650)
Q Consensus 545 kN~LE~~iy~~r~~L~ 560 (650)
++.|+..+.+.+++|+
T Consensus 569 ~~~l~~~l~~~~~wL~ 584 (653)
T PTZ00009 569 KATIEKAIDEALEWLE 584 (653)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3344444444444443
No 205
>PRK13320 pantothenate kinase; Reviewed
Probab=35.12 E-value=44 Score=33.09 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=18.8
Q ss_pred cEEEEEcCcceeEEEEEECCe
Q 043296 8 KAIGIDLGTTYSCVGVWQNDR 28 (650)
Q Consensus 8 ~vvGID~GTt~s~va~~~~g~ 28 (650)
.++.||.|+|+++.++++++.
T Consensus 3 M~L~iDiGNT~ik~~~~~~~~ 23 (244)
T PRK13320 3 MNLVIDIGNTTTKLAVFEGDE 23 (244)
T ss_pred eEEEEEeCCCcEEEEEEECCE
Confidence 489999999999999998664
No 206
>COG4296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.06 E-value=73 Score=27.82 Aligned_cols=21 Identities=14% Similarity=0.634 Sum_probs=16.4
Q ss_pred HHHHHcCCCC-cCHHHHHHHHH
Q 043296 583 TVEWLDGNQL-AEVDEFEDKLK 603 (650)
Q Consensus 583 ~~~WL~~~~~-a~~~~~~~kl~ 603 (650)
.++||+++.. -|.++|+++..
T Consensus 91 nE~WleEDe~~iTpE~fk~Rm~ 112 (156)
T COG4296 91 NEDWLEEDEQPITPESFKERMA 112 (156)
T ss_pred hhhhhhccCCccCHHHHHHHhh
Confidence 3789998754 69999998754
No 207
>PRK13326 pantothenate kinase; Reviewed
Probab=35.04 E-value=50 Score=33.11 Aligned_cols=23 Identities=17% Similarity=0.413 Sum_probs=20.2
Q ss_pred CCcEEEEEcCcceeEEEEEECCe
Q 043296 6 EGKAIGIDLGTTYSCVGVWQNDR 28 (650)
Q Consensus 6 ~~~vvGID~GTt~s~va~~~~g~ 28 (650)
-+..+.||.|+|+++++++++++
T Consensus 5 ~~~~L~IDiGNT~ik~glf~~~~ 27 (262)
T PRK13326 5 LSSQLIIDIGNTSISFALYKDNK 27 (262)
T ss_pred ccEEEEEEeCCCeEEEEEEECCE
Confidence 46789999999999999998765
No 208
>PRK00292 glk glucokinase; Provisional
Probab=34.51 E-value=36 Score=35.07 Aligned_cols=44 Identities=23% Similarity=0.234 Sum_probs=27.9
Q ss_pred HHcCCceeeecchhHHHHHhccccc-------ccCCC-CCceEEEEEeCCcc
Q 043296 167 AIAGLNVMRIINEPTAAAIAYGLDK-------KASRT-GEKNVLIFDLGGGT 210 (650)
Q Consensus 167 ~~AGl~~~~li~Ep~Aaal~y~~~~-------~~~~~-~~~~vlV~D~GggT 210 (650)
+..|++.+.+.|+-.|+|++-.... ..... ....++++-+|.|-
T Consensus 88 ~~~~~p~v~l~ND~~aaalgE~~~~~~~~~~~g~~~~~~~~~~~~v~~GTGi 139 (316)
T PRK00292 88 QELGLDHLLLINDFTAQALAIPRLGEEDLVQIGGGEPVPGAPIAVIGPGTGL 139 (316)
T ss_pred HHhCCCeEEEEecHHHHHcccccCCHhheeEeCCCCCCCCCcEEEEEcCCcc
Confidence 3458876799999999998754310 11001 13568888888653
No 209
>PLN02405 hexokinase
Probab=33.63 E-value=2.5e+02 Score=30.97 Aligned_cols=58 Identities=17% Similarity=0.099 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHHHHcCC--ceeeecchhHHHHHhcccccccCCCCCceEEEEEeCCcceEEEEEEE
Q 043296 155 NDSQRQATKDAGAIAGL--NVMRIINEPTAAAIAYGLDKKASRTGEKNVLIFDLGGGTFDVSLLTI 218 (650)
Q Consensus 155 ~~~qr~~l~~Aa~~AGl--~~~~li~Ep~Aaal~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~ 218 (650)
...-.+.+.+|...-|+ ++..++|+.++..++..+.. +.+.+=+=+|-||=-+.+-+.
T Consensus 204 G~DVv~lL~~Al~r~~l~v~v~AlvNDTVGTL~a~aY~~------~~~~iG~IlGTGtNacY~E~~ 263 (497)
T PLN02405 204 GQDVVGELTKAMERVGLDMRVSALVNDTIGTLAGGRYYN------PDVVAAVILGTGTNAAYVERA 263 (497)
T ss_pred CchHHHHHHHHHHHcCCCceEEEEEecCHHHHHHhhcCC------CCceEEEEEeCCeeeEEEeec
Confidence 33445666777776676 45789999999877765532 335555566777665554443
No 210
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=31.99 E-value=5.7e+02 Score=26.11 Aligned_cols=66 Identities=17% Similarity=0.133 Sum_probs=44.4
Q ss_pred HHHhHHHHHHHHHHHhcCCCCCCCCeEEEEcCccCc-HHHHHHHHhhhCCccccccCCcchhHHhHHHHHHHHHc
Q 043296 314 DLFRKCMEPVEKCLRDSKIDKSLVHDIVLVGGSTRI-PKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILS 387 (650)
Q Consensus 314 ~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~-p~v~~~l~~~f~~~~i~~~~~p~~ava~GAa~~a~~~~ 387 (650)
.++++....|...++...+ ......+.|.||.... |+......+.... +|..-+..||.+.|....
T Consensus 227 ~Il~~aa~~i~~~~~~l~~-~~g~~~l~l~GG~~~~~~~~~~~~~~~l~~-------~~~~D~~~GA~~~A~~~~ 293 (301)
T COG2971 227 RILKEAAAYIATLLEALSI-FNGSEKLSLLGGLAPSYPYYLSLFRRALLV-------PPIGDALSGAVLLALGRF 293 (301)
T ss_pred HHHHHHHHHHHHHHHHHhc-ccCCceEEEeccccccchhhHHHHHHHhcC-------CccccHHHHHHHHHHHhh
Confidence 4566666667666665432 2335679999998877 8888887776632 336677889988886443
No 211
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=31.70 E-value=4e+02 Score=27.50 Aligned_cols=84 Identities=18% Similarity=0.241 Sum_probs=50.9
Q ss_pred HHcCCceeeecchhHHHHHhcccccccC--------CCCCceEEEEEeCCcceEEEEEEEeCCEEEEEEeeC-CCCCC-h
Q 043296 167 AIAGLNVMRIINEPTAAAIAYGLDKKAS--------RTGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAG-DTHLG-G 236 (650)
Q Consensus 167 ~~AGl~~~~li~Ep~Aaal~y~~~~~~~--------~~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~-~~~lG-G 236 (650)
+..|++.+.+||+=+|.|+....-.... .......+|+=.|.| +-++.+--.++...++.+.+ ...+. -
T Consensus 88 ~~lg~~~v~liNDfeA~a~gl~~L~~~~l~~l~~g~~~~~~~~~Vig~GTG-LG~a~l~~~~~~~~v~~sEgGH~~fap~ 166 (316)
T PF02685_consen 88 QRLGIPRVRLINDFEAQAYGLPALDPEDLVTLQPGEPDPGGPRAVIGPGTG-LGVALLVPDGDGYYVLPSEGGHVDFAPR 166 (316)
T ss_dssp CCCT-TCEEEEEHHHHHHHHHHHHHHCCECCHCCEESSTTS-EEEEEESSS-EEEEEEEEETTEEEEEEE-GGGSB---S
T ss_pred HHhCCceEEEEcccchheeccCCCCHHHeeeccCCCCCCCCcEEEEEcCCC-cEEEEEEecCCceEeCCCccccccCCCC
Confidence 3458888999999999987763211111 134667899988865 45555544555555666653 33333 3
Q ss_pred hHHHHHHHHHHHHHH
Q 043296 237 EDFDNRLVNHFVAEF 251 (650)
Q Consensus 237 ~~~d~~l~~~l~~~~ 251 (650)
.+.+..|.+++.+++
T Consensus 167 ~~~e~~l~~~l~~~~ 181 (316)
T PF02685_consen 167 TDEEAELLRFLRRRY 181 (316)
T ss_dssp SHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhc
Confidence 466778888887766
No 212
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=31.19 E-value=3.7e+02 Score=28.48 Aligned_cols=51 Identities=18% Similarity=0.348 Sum_probs=26.6
Q ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHhcCCC--CCCCCeEEEEcCccCcHH-HHHHHHh
Q 043296 304 TRARFEELNMDLFRKCMEPVEKCLRDSKID--KSLVHDIVLVGGSTRIPK-VQQLLQD 358 (650)
Q Consensus 304 tr~~fe~~~~~~~~~i~~~i~~~l~~~~~~--~~~i~~V~LvGG~sr~p~-v~~~l~~ 358 (650)
..+.++.+++.+++..... + .+.++. ......|.++||.+.|-. +...+.+
T Consensus 67 ~~~~~~~i~~~i~~~s~~~-q---~~~~~~~~~~~~~~I~IiGG~GlmG~slA~~l~~ 120 (374)
T PRK11199 67 PPDLIEDVLRRVMRESYSS-E---NDKGFKTLNPDLRPVVIVGGKGQLGRLFAKMLTL 120 (374)
T ss_pred CHHHHHHHHHHHHHHHHHH-h---HHhcccccCcccceEEEEcCCChhhHHHHHHHHH
Confidence 4455566665555544421 1 222222 224578999998777643 3344444
No 213
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=30.98 E-value=40 Score=32.43 Aligned_cols=39 Identities=21% Similarity=0.234 Sum_probs=26.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCc---eeeecchhHHHHHhccc
Q 043296 151 PAYFNDSQRQATKDAGAIAGLN---VMRIINEPTAAAIAYGL 189 (650)
Q Consensus 151 Pa~~~~~qr~~l~~Aa~~AGl~---~~~li~Ep~Aaal~y~~ 189 (650)
|..-...-.+.+.+|....|+. ++.++|+.+|.-++.++
T Consensus 163 ~~~~G~dv~~lL~~al~r~~~~~v~v~aivNDTVgTLla~~Y 204 (206)
T PF00349_consen 163 SGVVGKDVVELLQDALKRRGLPNVKVVAIVNDTVGTLLAGAY 204 (206)
T ss_dssp BTGTTSBHHHHHHHHHHHHTSSEEEEEEEE-HHHHHHHHHHT
T ss_pred cCCCCCccchhHHHHHHHhcccCcceEEEEECCHHHhhhhhc
Confidence 3333444467778888888875 56789999998877654
No 214
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=30.70 E-value=3.3e+02 Score=22.92 Aligned_cols=68 Identities=18% Similarity=0.222 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhhhhHH--hHHHHHHHHHHHhHHHHHHHHHhhccchhhhcccCHHHHHHHHHHHHHHHHHHcCCCC
Q 043296 519 EDIERMVQEAEKYKAE--DEQVKKKVEAKNKLENYAYSMRNTVKDDKVAGKLAAADKQKIEKAVDETVEWLDGNQL 592 (650)
Q Consensus 519 ~e~~~~~~~~~~~~~~--d~~~~~~~~akN~LE~~iy~~r~~L~~~~~~~~~~~~~~~~i~~~l~e~~~WL~~~~~ 592 (650)
.|++.+...++++-.. +....+..++|-..++.+.+.|+.|... ...-.+..+..+..+.++..+++.
T Consensus 15 ~el~~L~d~lEevL~ssg~~a~~e~~~lR~r~~~~Lk~~r~rl~~~------~d~v~~~sk~a~~~tD~yV~e~PW 84 (104)
T COG4575 15 AELQELLDTLEEVLKSSGSLAGDEAEELRSKAESALKEARDRLGDT------GDAVVQRSKAAADATDDYVRENPW 84 (104)
T ss_pred HHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhh------hhHHHHHHHHHHHHHHHHHHcCCc
Confidence 3455555555544322 3344556777888888888899888652 234556778888888888888754
No 215
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=29.98 E-value=1.2e+02 Score=32.29 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=18.5
Q ss_pred cCHHHHHHHHHHHHHhHHHHHHH
Q 043296 593 AEVDEFEDKLKELEGLCNPIIAK 615 (650)
Q Consensus 593 a~~~~~~~kl~eL~~~~~~i~~r 615 (650)
.+..+|..||+.++++-.--..|
T Consensus 710 ~d~key~~klek~eki~eir~qr 732 (840)
T KOG2003|consen 710 KDAKEYADKLEKAEKIKEIREQR 732 (840)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHh
Confidence 47889999999998877666666
No 216
>PLN03170 chalcone synthase; Provisional
Probab=29.53 E-value=1.7e+02 Score=31.46 Aligned_cols=48 Identities=15% Similarity=0.234 Sum_probs=38.9
Q ss_pred HHHhHHHHHHHHHHHhcCCCCCCCCeEEEEcCcc-CcHHHHHHHHhhhC
Q 043296 314 DLFRKCMEPVEKCLRDSKIDKSLVHDIVLVGGST-RIPKVQQLLQDFFN 361 (650)
Q Consensus 314 ~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~s-r~p~v~~~l~~~f~ 361 (650)
...+=..+..+++|+++++++.+|+.|+++-.+. .+|.+.-.|.+.+|
T Consensus 105 ~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LG 153 (401)
T PLN03170 105 EVPKLGKAAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKMLG 153 (401)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCCCChHHHHHHHHhC
Confidence 3444556778899999999999999988776444 69999999999995
No 217
>PF13941 MutL: MutL protein
Probab=29.23 E-value=1.3e+02 Score=32.82 Aligned_cols=47 Identities=23% Similarity=0.275 Sum_probs=32.8
Q ss_pred EEEEEeCCcceEEEEEEEeCCEEEEEEeeCCCCCChh-HHHHHHHHHH
Q 043296 201 VLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGE-DFDNRLVNHF 247 (650)
Q Consensus 201 vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~-~~d~~l~~~l 247 (650)
+|++|||+.+|-++++....+..++++......--.. |+..-+.+.+
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig~a~apTTv~~~Dv~~G~~~A~ 49 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLIGQAEAPTTVEPGDVTIGLNNAL 49 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEEEEEeCCCCcCcccHHHHHHHHH
Confidence 7999999999999999977777777766533322233 6655555443
No 218
>PLN03173 chalcone synthase; Provisional
Probab=29.20 E-value=1.9e+02 Score=30.93 Aligned_cols=48 Identities=17% Similarity=0.250 Sum_probs=38.2
Q ss_pred HHHhHHHHHHHHHHHhcCCCCCCCCeEEEEcCcc-CcHHHHHHHHhhhC
Q 043296 314 DLFRKCMEPVEKCLRDSKIDKSLVHDIVLVGGST-RIPKVQQLLQDFFN 361 (650)
Q Consensus 314 ~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~s-r~p~v~~~l~~~f~ 361 (650)
...+=..+.++++|+++++++.+|+.|+++.-+. ..|.+--.|.+.+|
T Consensus 101 ~a~~La~~Aa~~AL~~ag~~~~dId~li~~t~t~~~~P~~a~~l~~~LG 149 (391)
T PLN03173 101 EVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLG 149 (391)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcccHHHHHHHHHhC
Confidence 3344445678899999999999999998876444 58999999999984
No 219
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=29.01 E-value=54 Score=35.97 Aligned_cols=20 Identities=40% Similarity=0.539 Sum_probs=18.2
Q ss_pred CCcEEEEEcCcceeEEEEEE
Q 043296 6 EGKAIGIDLGTTYSCVGVWQ 25 (650)
Q Consensus 6 ~~~vvGID~GTt~s~va~~~ 25 (650)
...++|||.|||.+++++++
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~ 24 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFN 24 (516)
T ss_pred cceEEEEEcCCCceEEEEEe
Confidence 46799999999999999986
No 220
>PLN03172 chalcone synthase family protein; Provisional
Probab=28.76 E-value=2e+02 Score=30.82 Aligned_cols=50 Identities=16% Similarity=0.236 Sum_probs=39.6
Q ss_pred HHHHHhHHHHHHHHHHHhcCCCCCCCCeEEEEcCcc-CcHHHHHHHHhhhC
Q 043296 312 NMDLFRKCMEPVEKCLRDSKIDKSLVHDIVLVGGST-RIPKVQQLLQDFFN 361 (650)
Q Consensus 312 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~s-r~p~v~~~l~~~f~ 361 (650)
.+...+=..+..+++|+++++++.+|+.|+++-.+. .+|.+--.|.+.+|
T Consensus 99 ~~~a~~La~~Aa~~aL~~ag~~~~dId~ii~~t~t~~~~P~~a~~l~~~LG 149 (393)
T PLN03172 99 VVEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLG 149 (393)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcCchHHHHHHHHhC
Confidence 334444556778899999999999999998776544 69999999999994
No 221
>PLN02914 hexokinase
Probab=28.53 E-value=5e+02 Score=28.68 Aligned_cols=62 Identities=15% Similarity=0.117 Sum_probs=39.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCC--ceeeecchhHHHHHhcccccccCCCCCceEEEEEeCCcceEEEEEEE
Q 043296 151 PAYFNDSQRQATKDAGAIAGL--NVMRIINEPTAAAIAYGLDKKASRTGEKNVLIFDLGGGTFDVSLLTI 218 (650)
Q Consensus 151 Pa~~~~~qr~~l~~Aa~~AGl--~~~~li~Ep~Aaal~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~ 218 (650)
+..-...-.+.+.+|.+.-|+ ++..++|+.++..++..+.. +++.+=+=+|-||=-+.+-++
T Consensus 200 ~gv~G~DVv~lL~~Al~r~~l~v~v~AivNDTVGTL~a~aY~~------~~~~iGlIlGTGtNacY~E~~ 263 (490)
T PLN02914 200 SGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWD------DDVMVAVILGTGTNACYVERT 263 (490)
T ss_pred CCccCchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHhhhcCC------CCceEEEEEECCeeeEEEeec
Confidence 333344445666677766665 56788999999877665532 335555667777766665544
No 222
>PLN00130 succinate dehydrogenase (SDH3); Provisional
Probab=27.43 E-value=8.1 Score=35.29 Aligned_cols=21 Identities=19% Similarity=0.286 Sum_probs=17.4
Q ss_pred CcEEEEEcCcceeEEEEEECC
Q 043296 7 GKAIGIDLGTTYSCVGVWQND 27 (650)
Q Consensus 7 ~~vvGID~GTt~s~va~~~~g 27 (650)
.-++|+|+||+|++++..++.
T Consensus 57 ~d~~g~~~gt~n~~~~~~e~~ 77 (213)
T PLN00130 57 NDILGTGLGTNNAIREEREKS 77 (213)
T ss_pred cceeccCCCcchHHHHHHhcc
Confidence 458999999999999887543
No 223
>COG4755 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.23 E-value=4.2e+02 Score=23.09 Aligned_cols=78 Identities=12% Similarity=0.175 Sum_probs=48.7
Q ss_pred HHHHhHHHHHHHHHhhccchhhhcccCHHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHH--HhHHHHHHHHhcCC
Q 043296 543 EAKNKLENYAYSMRNTVKDDKVAGKLAAADKQKIEKAVDETVEWLDGNQLAEVDEFEDKLKELE--GLCNPIIAKMYQGD 620 (650)
Q Consensus 543 ~akN~LE~~iy~~r~~L~~~~~~~~~~~~~~~~i~~~l~e~~~WL~~~~~a~~~~~~~kl~eL~--~~~~~i~~r~~e~~ 620 (650)
.|.|.+-..+...-++|+++.....++.+-...+.+.+-++-.-|-+-.=...++|++-+.+.. ..+.||..-+..+.
T Consensus 55 ~af~hm~rtLKaFd~WLqdP~v~s~mPremL~dv~~t~~e~~~~lielDIrHTSq~kelisk~srEGkl~pvl~~~~~~~ 134 (151)
T COG4755 55 AAFGHMARTLKAFDSWLQDPVVTSVMPREMLRDVESTLREVAIKLIELDIRHTSQYKELISKFSREGKLPPVLMLYIQQR 134 (151)
T ss_pred HHHHHHHHHHHHHHHHHhCchHhhhCcHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHhhcCCCCchHHhhhhcc
Confidence 3555555566666677777766777777777777777766666555432235566666666654 34567776544444
No 224
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]
Probab=27.17 E-value=1.5e+02 Score=29.99 Aligned_cols=21 Identities=24% Similarity=0.531 Sum_probs=15.4
Q ss_pred HHHHHHHhHHHHHHHHHhhcc
Q 043296 540 KKVEAKNKLENYAYSMRNTVK 560 (650)
Q Consensus 540 ~~~~akN~LE~~iy~~r~~L~ 560 (650)
+..++..++.+..|++++.|-
T Consensus 218 ~~~e~~~~mk~~A~~~~~al~ 238 (333)
T COG2605 218 ETLEALHEMKALAYEMKDALV 238 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355666777788888888874
No 225
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=27.15 E-value=4.2e+02 Score=25.09 Aligned_cols=49 Identities=20% Similarity=0.277 Sum_probs=35.5
Q ss_pred HHHHHHHHHhHHHHHHHHHhhccchhhhcccCHHHHHHHHHHHHHHHHHHcC
Q 043296 538 VKKKVEAKNKLENYAYSMRNTVKDDKVAGKLAAADKQKIEKAVDETVEWLDG 589 (650)
Q Consensus 538 ~~~~~~akN~LE~~iy~~r~~L~~~~~~~~~~~~~~~~i~~~l~e~~~WL~~ 589 (650)
.+.....+.+||..|.+++.+++.. +..++++++...+..++..++|..
T Consensus 194 ~k~le~~k~~Le~~ia~~k~K~e~~---e~r~~E~r~ieEkk~~eei~fLk~ 242 (259)
T KOG4001|consen 194 WKVLEDKKKELELKIAQLKKKLETD---EIRSEEEREIEEKKMKEEIEFLKE 242 (259)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3445566788999999999888653 334667777778888888887754
No 226
>PRK13848 conjugal transfer protein TraC; Provisional
Probab=27.04 E-value=3.5e+02 Score=22.12 Aligned_cols=21 Identities=19% Similarity=0.395 Sum_probs=16.6
Q ss_pred HHHHHhHHHHHHHHhcCCCCC
Q 043296 603 KELEGLCNPIIAKMYQGDGGD 623 (650)
Q Consensus 603 ~eL~~~~~~i~~r~~e~~~~~ 623 (650)
.+|...+..|..|+.+..+.+
T Consensus 47 ~eL~~aFeeiAaRFR~g~~~~ 67 (98)
T PRK13848 47 AELQAAFEELAKRFRGGKGAA 67 (98)
T ss_pred HHHHHHHHHHHHHHhcCCCcc
Confidence 568888888999999877643
No 227
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=25.88 E-value=74 Score=32.97 Aligned_cols=37 Identities=24% Similarity=0.268 Sum_probs=19.8
Q ss_pred HHHHHHHHcCCCCcCHHHHHHHHHHHHHhHHHHHHHHh
Q 043296 580 VDETVEWLDGNQLAEVDEFEDKLKELEGLCNPIIAKMY 617 (650)
Q Consensus 580 l~e~~~WL~~~~~a~~~~~~~kl~eL~~~~~~i~~r~~ 617 (650)
|+++++||.+++. +++.+.+++.+-++.+-||.-++.
T Consensus 10 LeeLe~kLa~~d~-~Kd~V~~~I~ea~~sILPlRL~FN 46 (379)
T PF11593_consen 10 LEELEEKLASNDN-SKDSVMDKISEAQDSILPLRLQFN 46 (379)
T ss_pred HHHHHHHHhcCCc-hHHHHHHHHHHHHhccccHHHHHH
Confidence 5555666654333 555555555555555555544443
No 228
>KOG3133 consensus 40 kDa farnesylated protein associated with peroxisomes [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.84 E-value=2.3e+02 Score=28.07 Aligned_cols=59 Identities=12% Similarity=0.288 Sum_probs=33.4
Q ss_pred HhHHHHHHHHHhhccchhhhcccCHHHHHHHHHHHHHHHHHHcCCCCc----CHHHHHHHHHHHHHhHHH
Q 043296 546 NKLENYAYSMRNTVKDDKVAGKLAAADKQKIEKAVDETVEWLDGNQLA----EVDEFEDKLKELEGLCNP 611 (650)
Q Consensus 546 N~LE~~iy~~r~~L~~~~~~~~~~~~~~~~i~~~l~e~~~WL~~~~~a----~~~~~~~kl~eL~~~~~~ 611 (650)
+.||.++..+=+.|-+.++ + -.-+++....+=.||.++... +.+.|++..+-++.++.+
T Consensus 142 g~le~~m~~iMqqllSKEI---L----yeplKEl~~~YPkwLeen~e~l~~E~~erYqkQ~~~i~~i~~~ 204 (267)
T KOG3133|consen 142 GDLEPIMESIMQQLLSKEI---L----YEPLKELGANYPKWLEENGESLSKEDKERYQKQFELIKEIESV 204 (267)
T ss_pred ccHHHHHHHHHHHHHHHHH---h----hhhHHHHHHHhhHHHHhcccccCHHHHHHHHHHHHHHHHHHHH
Confidence 5567777666555533211 1 135677778888899887432 445555555544444433
No 229
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=25.76 E-value=4.4e+02 Score=22.83 Aligned_cols=46 Identities=13% Similarity=0.203 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHHhHHHHHHHHhcCC
Q 043296 571 ADKQKIEKAVDETVEWLDGNQLAEVDEFEDKLKELEGLCNPIIAKMYQGD 620 (650)
Q Consensus 571 ~~~~~i~~~l~e~~~WL~~~~~a~~~~~~~kl~eL~~~~~~i~~r~~e~~ 620 (650)
..++++...|++-.+.|+- -.+.++..-+.|+.-++.+...++...
T Consensus 66 ~~k~~~~~eL~er~E~Le~----ri~tLekQe~~l~e~l~eLq~~i~~~l 111 (119)
T COG1382 66 VSKEEAVDELEERKETLEL----RIKTLEKQEEKLQERLEELQSEIQKAL 111 (119)
T ss_pred hhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555555555542 234444444444555555555555544
No 230
>PLN02596 hexokinase-like
Probab=25.51 E-value=8.4e+02 Score=26.93 Aligned_cols=163 Identities=15% Similarity=0.064 Sum_probs=0.0
Q ss_pred CCCCcEEEEEcCcceeEEEEE--ECCeeEEEecCCCCcccceEEEEcCCcEEecHHHHHhHhhCcCchhhhhhHhcCCCC
Q 043296 4 KTEGKAIGIDLGTTYSCVGVW--QNDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRRF 81 (650)
Q Consensus 4 ~~~~~vvGID~GTt~s~va~~--~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~ 81 (650)
++....++||||.||..|+.+ ..+...+.........+|--+--...+.+|..-| ..+..|..--+...
T Consensus 93 ~E~G~yLAlDlGGTNfRV~~V~L~g~~~~~~~~~~~~~~Ip~~l~~~t~~eLFd~IA---------~~i~~fl~~~~~~~ 163 (490)
T PLN02596 93 DEKGLYYGLNLRGSNFLLLRARLGGKNEPISDLYREEISIPSNVLNGTSQELFDYIA---------LELAKFVAEHPGDE 163 (490)
T ss_pred CcceEEEEEeeCCceEEEEEEEEcCCCCceEEEEEEEecCChHhhcCCHHHHHHHHH---------HHHHHHHHhhcccc
Q ss_pred CChhhhhhcccCCeEEEeCCCCCceEEEEECCcceEecHHHHHHHHHHHHHHHHHHHhcCCCCcEEEE------eCCCCC
Q 043296 82 SDPSVQSDMRHWPFKVASGPGDKPMIAVTYKGEEKRFSPEEISSMVLTKMKEIAEAYLGHAVKNAVVT------VPAYFN 155 (650)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~Vit------VPa~~~ 155 (650)
..+. ...-..++.+.|.-. ...+.+..+- ++..-.
T Consensus 164 ~~~~--------------~~~l~lGfTFSFP~~-------------------------Q~si~~G~Li~WKgF~~~~~vG 204 (490)
T PLN02596 164 ADTP--------------ERVKKLGFTVSYPVD-------------------------QAAASSGSAIKWKSFSADDTVG 204 (490)
T ss_pred ccCc--------------ccccccceEEeeeee-------------------------ecCCCCEEEEEeccccCCCccC
Q ss_pred HHHHHHHHHHHHHcCC--ceeeecchhHHHHHhcccccccCCCCCceEEEEEeCCcceEEEEEEEeC
Q 043296 156 DSQRQATKDAGAIAGL--NVMRIINEPTAAAIAYGLDKKASRTGEKNVLIFDLGGGTFDVSLLTIEE 220 (650)
Q Consensus 156 ~~qr~~l~~Aa~~AGl--~~~~li~Ep~Aaal~y~~~~~~~~~~~~~vlV~D~GggT~dvsv~~~~~ 220 (650)
..-.+.+.+|...-|+ +++.++|+.++..++.++.... +.+=+=+|-||=-+.+-++..
T Consensus 205 ~Dvv~lL~~Al~r~~l~v~v~AivNDTVgTL~a~aY~~~~------~~iG~I~GTGtNacY~E~~~~ 265 (490)
T PLN02596 205 KALVNDINRALEKHGLKIRVFALVDDTIGNLAGGRYYNKD------TVAAVTLGMGTNAAYVEPAQA 265 (490)
T ss_pred cHHHHHHHHHHHhcCCCceEEEEEEcCHHHHHhhhcCCCC------eEEEEEEecccceEEEEEccc
No 231
>PF04848 Pox_A22: Poxvirus A22 protein; InterPro: IPR006932 This family, representing the Poxvirus A22 protein, is a Holliday junction resolvase, it specifically cleaves and resolves four-way DNA Holliday junctions into linear duplex products. ; GO: 0000287 magnesium ion binding, 0000400 four-way junction DNA binding, 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination
Probab=25.42 E-value=1.1e+02 Score=27.36 Aligned_cols=18 Identities=17% Similarity=0.276 Sum_probs=16.7
Q ss_pred cEEEEEcCcceeEEEEEE
Q 043296 8 KAIGIDLGTTYSCVGVWQ 25 (650)
Q Consensus 8 ~vvGID~GTt~s~va~~~ 25 (650)
.+++||.|+-|.+.++.+
T Consensus 2 ii~sIDiGikNlA~~iie 19 (143)
T PF04848_consen 2 IILSIDIGIKNLAYCIIE 19 (143)
T ss_pred eEEEEecCCCceeEEEEE
Confidence 589999999999999986
No 232
>PRK12408 glucokinase; Provisional
Probab=25.36 E-value=53 Score=34.31 Aligned_cols=22 Identities=18% Similarity=0.132 Sum_probs=18.7
Q ss_pred CCCcEEEEEcCcceeEEEEEEC
Q 043296 5 TEGKAIGIDLGTTYSCVGVWQN 26 (650)
Q Consensus 5 ~~~~vvGID~GTt~s~va~~~~ 26 (650)
.+..++|||+|.|++++++++.
T Consensus 14 ~~~~~L~~DIGGT~i~~al~d~ 35 (336)
T PRK12408 14 RPESFVAADVGGTHVRVALVCA 35 (336)
T ss_pred ccccEEEEEcChhhhheeEEec
Confidence 3456899999999999999963
No 233
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=24.57 E-value=7.8e+02 Score=26.86 Aligned_cols=25 Identities=16% Similarity=0.492 Sum_probs=16.2
Q ss_pred CHHHHHHHHHHHHHhHHHHHHHHhc
Q 043296 594 EVDEFEDKLKELEGLCNPIIAKMYQ 618 (650)
Q Consensus 594 ~~~~~~~kl~eL~~~~~~i~~r~~e 618 (650)
+.+.+++.+..|+..++.+..|+..
T Consensus 117 ~~~ql~~~~~~~~~~l~~l~~~l~~ 141 (472)
T TIGR03752 117 EIEQLKSERQQLQGLIDQLQRRLAG 141 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455566666777777777777644
No 234
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=24.53 E-value=37 Score=37.12 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=14.7
Q ss_pred EEEEcCcceeEEEEEE
Q 043296 10 IGIDLGTTYSCVGVWQ 25 (650)
Q Consensus 10 vGID~GTt~s~va~~~ 25 (650)
+|||+|||++++++++
T Consensus 1 ~aiD~Gtt~~k~~l~~ 16 (454)
T TIGR02627 1 VAVDLGASSGRVMLAS 16 (454)
T ss_pred CcEeccCCchheEEEE
Confidence 5899999999999985
No 235
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=24.52 E-value=5.1e+02 Score=27.96 Aligned_cols=43 Identities=26% Similarity=0.373 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhhhh----HHhHHHHHHHHHHHhHHHHHHHHHhhccc
Q 043296 519 EDIERMVQEAEKYK----AEDEQVKKKVEAKNKLENYAYSMRNTVKD 561 (650)
Q Consensus 519 ~e~~~~~~~~~~~~----~~d~~~~~~~~akN~LE~~iy~~r~~L~~ 561 (650)
+++...+++++++. .-++..++...--|.+++|...|+.+.++
T Consensus 281 ~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~ 327 (622)
T COG5185 281 DNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQE 327 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence 44444555444443 34666677777789999999999988754
No 236
>PF07865 DUF1652: Protein of unknown function (DUF1652); InterPro: IPR012448 The proteins in this entry have not been characterised.
Probab=24.34 E-value=2.5e+02 Score=21.73 Aligned_cols=49 Identities=24% Similarity=0.346 Sum_probs=33.1
Q ss_pred eEEEEEEcCCceEEEEEeecccCceeeEEEec--CCCCCCHHHHHHHHHHHh
Q 043296 480 INVCFDIDANGILHVSAEDKTAGVKNQITITN--DKGRLSKEDIERMVQEAE 529 (650)
Q Consensus 480 i~v~~~~d~~g~l~v~~~~~~~~~~~~~~i~~--~~~~ls~~e~~~~~~~~~ 529 (650)
....+.++.+|.++|...+..+|.. .++++. -..-.|..+|.+++.+++
T Consensus 15 l~C~ct~~~~~smtvrl~d~~sg~~-~l~vtGI~~~~l~s~rdI~~LI~eLr 65 (69)
T PF07865_consen 15 LRCECTIAPDGSMTVRLFDPASGRV-ELTVTGISTSALNSSRDIVRLIAELR 65 (69)
T ss_pred ceeEEEECCCCcEEEEEecCCCCcE-EEEEcCcCHHHcCCHHHHHHHHHHHH
Confidence 6778899999999999999988875 233321 112245666766665544
No 237
>PLN03168 chalcone synthase; Provisional
Probab=24.17 E-value=2.4e+02 Score=30.15 Aligned_cols=51 Identities=18% Similarity=0.276 Sum_probs=39.2
Q ss_pred HHHHHHhHHHHHHHHHHHhcCCCCCCCCeEEEEcCc-cCcHHHHHHHHhhhC
Q 043296 311 LNMDLFRKCMEPVEKCLRDSKIDKSLVHDIVLVGGS-TRIPKVQQLLQDFFN 361 (650)
Q Consensus 311 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~-sr~p~v~~~l~~~f~ 361 (650)
..+...+=..+..+++|+++++++.+|+.|+++-.+ -.+|.+--.|.+.+|
T Consensus 97 ~~~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LG 148 (389)
T PLN03168 97 VVVQVPKLAAEAAQKAIKEWGGRKSDITHIVFATTSGVNMPGADHALAKLLG 148 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCccHHHHHHHHhC
Confidence 333444555677899999999999999999876332 357999999999994
No 238
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=24.15 E-value=4.3e+02 Score=22.30 Aligned_cols=60 Identities=17% Similarity=0.270 Sum_probs=35.6
Q ss_pred eeeeecccCcceEEEEeeccccccccCCcceeEEEecCCCCCCCCCceeEEEEEEcC--CceEEEEE
Q 043296 432 QVFSTYADNQTSVLIQVYEGERARTKDNNLLGTFELKGIPPAPRGVPQINVCFDIDA--NGILHVSA 496 (650)
Q Consensus 432 ~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~~~~~~~~~~~i~v~~~~d~--~g~l~v~~ 496 (650)
..|....+....+.+.+|.-+.. .+..||++.+. +.....|. .....|.+.. .|.|+++.
T Consensus 54 f~f~i~~~~~~~l~v~v~d~d~~---~~~~iG~~~~~-l~~l~~g~-~~~~~~~L~~~~~g~l~~~~ 115 (119)
T cd04036 54 FEFRIQSQVKNVLELTVMDEDYV---MDDHLGTVLFD-VSKLKLGE-KVRVTFSLNPQGKEELEVEF 115 (119)
T ss_pred EEEEeCcccCCEEEEEEEECCCC---CCcccEEEEEE-HHHCCCCC-cEEEEEECCCCCCceEEEEE
Confidence 33433333334578888875432 56789999876 44333343 3666777765 47776654
No 239
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=23.97 E-value=3.1e+02 Score=27.97 Aligned_cols=51 Identities=20% Similarity=0.233 Sum_probs=34.4
Q ss_pred CCceEEEEEeCCcceEEEEEEEeCCEEEEEEeeCCCCCChhHHHHHHHHHH
Q 043296 197 GEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHF 247 (650)
Q Consensus 197 ~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l 247 (650)
....++-+|+|+.++.++++......+..........-....+-+.|.+.+
T Consensus 4 ~~~~~lgidIggt~i~~~l~d~~g~~l~~~~~~~~~~~~~~~~~~~i~~~i 54 (314)
T COG1940 4 EAMTVLGIDIGGTKIKVALVDLDGEILLRERIPTPTPDPEEAILEAILALV 54 (314)
T ss_pred cCcEEEEEEecCCEEEEEEECCCCcEEEEEEEecCCCCchhHHHHHHHHHH
Confidence 356789999999999999999887765544444333333345555555554
No 240
>PRK10404 hypothetical protein; Provisional
Probab=23.91 E-value=4.4e+02 Score=22.11 Aligned_cols=68 Identities=16% Similarity=0.208 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhhhhHH--hHHHHHHHHHHHhHHHHHHHHHhhccchhhhcccCHHHHHHHHHHHHHHHHHHcCCCC
Q 043296 519 EDIERMVQEAEKYKAE--DEQVKKKVEAKNKLENYAYSMRNTVKDDKVAGKLAAADKQKIEKAVDETVEWLDGNQL 592 (650)
Q Consensus 519 ~e~~~~~~~~~~~~~~--d~~~~~~~~akN~LE~~iy~~r~~L~~~~~~~~~~~~~~~~i~~~l~e~~~WL~~~~~ 592 (650)
.+++.+...++++... +....+..+.|..+++.+..+|+.|.+- ...-..+.+.....+.++.-+++.
T Consensus 12 ~dl~~L~~dle~Ll~~~~~~a~e~~~~lR~r~~~~L~~ar~~l~~~------~~~~~~~~k~aa~~td~yV~e~Pw 81 (101)
T PRK10404 12 DDLTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQA------SDSYYYRAKQAVYRADDYVHEKPW 81 (101)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh------HHHHHHHHHHHHHHHHHHHHhCcH
Confidence 4555565555555322 3344556777888888888888887651 112223456777777777777643
No 241
>PF07066 DUF3882: Lactococcus phage M3 protein; InterPro: IPR009773 This family consists of several Lactococcus bacteriophage 712, middle-3 (M3) proteins of around 160 residues in length. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The function of this family is unknown.
Probab=23.50 E-value=96 Score=27.67 Aligned_cols=24 Identities=13% Similarity=0.285 Sum_probs=19.7
Q ss_pred CCcEEEEEcCcce-----eEEEEEECCee
Q 043296 6 EGKAIGIDLGTTY-----SCVGVWQNDRV 29 (650)
Q Consensus 6 ~~~vvGID~GTt~-----s~va~~~~g~~ 29 (650)
|+.+++|||-|++ ++-|+.+.+..
T Consensus 1 ~~~~LslD~STs~~~~~gTG~A~~~~~~~ 29 (159)
T PF07066_consen 1 MKKVLSLDFSTSSKKGEGTGWAFFKGSDL 29 (159)
T ss_pred CCeeEEEEEecccCCCCCceeEEecCCeE
Confidence 4569999999998 99998876543
No 242
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=23.38 E-value=81 Score=31.21 Aligned_cols=19 Identities=21% Similarity=0.338 Sum_probs=17.1
Q ss_pred EEEEcCcceeEEEEEECCe
Q 043296 10 IGIDLGTTYSCVGVWQNDR 28 (650)
Q Consensus 10 vGID~GTt~s~va~~~~g~ 28 (650)
+.||.|+|+++++++++++
T Consensus 2 L~iDiGNT~i~~g~~~~~~ 20 (243)
T TIGR00671 2 LLIDVGNTRIVFALNSGNK 20 (243)
T ss_pred EEEEECCCcEEEEEEECCE
Confidence 6799999999999998765
No 243
>PLN02854 3-ketoacyl-CoA synthase
Probab=23.26 E-value=1.7e+02 Score=32.54 Aligned_cols=45 Identities=2% Similarity=0.164 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHhcCCCCCCCCeEEE-EcCccCcHHHHHHHHhhhC
Q 043296 317 RKCMEPVEKCLRDSKIDKSLVHDIVL-VGGSTRIPKVQQLLQDFFN 361 (650)
Q Consensus 317 ~~i~~~i~~~l~~~~~~~~~i~~V~L-vGG~sr~p~v~~~l~~~f~ 361 (650)
.-+...++++|+++++++.+|+.|++ +.+....|.+-.+|.+.+|
T Consensus 190 ~v~~~~~~~lL~kaGi~p~dID~LIv~cS~~~p~PSlAa~I~n~LG 235 (521)
T PLN02854 190 AVMFGALDSLFSKTGVKPRDIGILIVNCSLFNPTPSLSAMIVNHYK 235 (521)
T ss_pred HHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCCHHHHHHHHhC
Confidence 33456677889999999999999987 3445568999999999994
No 244
>PHA02557 22 prohead core protein; Provisional
Probab=23.03 E-value=7.3e+02 Score=24.75 Aligned_cols=82 Identities=20% Similarity=0.324 Sum_probs=50.4
Q ss_pred HHHHHHHHhhhhHHhHHHHHHHHHHHhHHHHHHHH-HhhccchhhhcccCHHHHHHHHHHHHHHHHHHcCCCCcCHHHHH
Q 043296 521 IERMVQEAEKYKAEDEQVKKKVEAKNKLENYAYSM-RNTVKDDKVAGKLAAADKQKIEKAVDETVEWLDGNQLAEVDEFE 599 (650)
Q Consensus 521 ~~~~~~~~~~~~~~d~~~~~~~~akN~LE~~iy~~-r~~L~~~~~~~~~~~~~~~~i~~~l~e~~~WL~~~~~a~~~~~~ 599 (650)
+..|..++.++ ..+.....+..+.|+.+|..+ |+.+-. +...-+++.+++++...++-++- .+.|.
T Consensus 143 V~em~~~L~E~---e~~~~~l~~en~~l~e~i~~~~r~~i~~-e~t~gLtdsQkeKv~~L~Egvef---------~e~F~ 209 (271)
T PHA02557 143 VAEMEEELDEM---EEELNELFEENVALEEYINEVKREVILS-EVTKDLTESQKEKVASLAEGLEF---------SETFS 209 (271)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcchhHHHHHHHHHHHhccch---------hhHHH
Confidence 44444444443 334445566667777777554 444422 24566778888888777654432 47899
Q ss_pred HHHHHHHHhHHHHHHH
Q 043296 600 DKLKELEGLCNPIIAK 615 (650)
Q Consensus 600 ~kl~eL~~~~~~i~~r 615 (650)
.||..+...+.+....
T Consensus 210 ~kl~~i~E~v~~~~~~ 225 (271)
T PHA02557 210 KKLTAIVEMVFKSKDK 225 (271)
T ss_pred HHHHHHHHHHHhcccc
Confidence 9998888887666443
No 245
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=22.93 E-value=2.3e+02 Score=29.62 Aligned_cols=47 Identities=23% Similarity=0.192 Sum_probs=35.1
Q ss_pred CCCeEEEEcCccCc-HHHHHHHH---hhh--CCccccccCCcchhHHhHHHHH
Q 043296 336 LVHDIVLVGGSTRI-PKVQQLLQ---DFF--NGKELCKSINPDEAVAYGAAVQ 382 (650)
Q Consensus 336 ~i~~V~LvGG~sr~-p~v~~~l~---~~f--~~~~i~~~~~p~~ava~GAa~~ 382 (650)
.++.|+++|.+-|. |...+.|. .++ +..+.....|...+.|+||.+.
T Consensus 287 ~~~~I~f~G~~~~~~~~~~~~l~~a~~~~s~~~~~~~fl~h~gy~galGa~l~ 339 (341)
T PF03630_consen 287 GVKRIVFGGSFIRNNPITMRTLSYAINFWSKGELKALFLRHEGYLGALGAFLK 339 (341)
T ss_dssp T--EEEEESGGGTSSCHHHHHHHHHHHHHTTTS-EEEEETTTTSHHHHHHHHT
T ss_pred CCCEEEEEeccccCCHHHHHHHHHHHHHhccCCceEEEecCCchhHHHHHHHh
Confidence 47899999999875 77888888 444 3456667778999999999874
No 246
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=22.90 E-value=2.6e+02 Score=28.29 Aligned_cols=49 Identities=35% Similarity=0.349 Sum_probs=31.3
Q ss_pred eEEEEcCccC-cHHHHHHHHhhhCC---ccccccCCcchhHHhHHHHHHHHHc
Q 043296 339 DIVLVGGSTR-IPKVQQLLQDFFNG---KELCKSINPDEAVAYGAAVQAAILS 387 (650)
Q Consensus 339 ~V~LvGG~sr-~p~v~~~l~~~f~~---~~i~~~~~p~~ava~GAa~~a~~~~ 387 (650)
.|++|||.-. ...+++-....+.. -+-.....|.+.-|.|||+.|+.+.
T Consensus 266 ~Iv~vG~V~~Sw~~l~~Gfl~sls~~~~f~~~~l~~~k~ssAvgAA~laa~~~ 318 (336)
T KOG1794|consen 266 PIVCVGGVFDSWDLLQEGFLDSLSDTRGFERVELYRPKESSAVGAAILAASLD 318 (336)
T ss_pred eEEEEcchhhHHHHHHHHHHHHhhcccCccceEEEeecccchHHHHHHhhhhc
Confidence 5999999544 34555444333211 1123345788899999999999765
No 247
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=22.83 E-value=5e+02 Score=28.43 Aligned_cols=26 Identities=38% Similarity=0.653 Sum_probs=23.3
Q ss_pred CCCceEEEEEeCCcceEEEEEEEeCC
Q 043296 196 TGEKNVLIFDLGGGTFDVSLLTIEEG 221 (650)
Q Consensus 196 ~~~~~vlV~D~GggT~dvsv~~~~~~ 221 (650)
++...++.+|+||..+-|..+.+.++
T Consensus 83 ~E~G~~lalDLGGTn~Rv~~v~L~g~ 108 (474)
T KOG1369|consen 83 TEKGKFLALDLGGTNFRVLLVKLGGG 108 (474)
T ss_pred CcCCCEEEEecCCCceEEEEEEecCC
Confidence 45678999999999999999999876
No 248
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=22.79 E-value=1.2e+02 Score=32.35 Aligned_cols=47 Identities=9% Similarity=0.031 Sum_probs=32.5
Q ss_pred HHHHHhHHHHHHHHHHHhcCCCCCCCCeEEEEcCcc-CcHHHHHHHHhhhC
Q 043296 312 NMDLFRKCMEPVEKCLRDSKIDKSLVHDIVLVGGST-RIPKVQQLLQDFFN 361 (650)
Q Consensus 312 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~s-r~p~v~~~l~~~f~ 361 (650)
++-.+.++.+.|-...... ...+|.|+++||-+ ..+.|++.|.+.+.
T Consensus 302 ~d~f~yri~k~Iga~~a~L---~g~vDaiVfTGGIgE~s~~lr~~I~~~l~ 349 (402)
T PRK00180 302 LDVFVYRLAKYIGSYAAAL---NGRLDAIVFTAGIGENSALVREKVLEGLE 349 (402)
T ss_pred HHHHHHHHHHHHHHHHHHh---cCCCCEEEEcCccccCCHHHHHHHHhhhh
Confidence 3334445555544444332 13599999999999 99999999998773
No 249
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=22.78 E-value=92 Score=29.09 Aligned_cols=18 Identities=39% Similarity=0.684 Sum_probs=16.3
Q ss_pred EEEEcCcceeEEEEEECC
Q 043296 10 IGIDLGTTYSCVGVWQND 27 (650)
Q Consensus 10 vGID~GTt~s~va~~~~g 27 (650)
||||.|.|||=+.+.+++
T Consensus 2 igIDvGGT~TD~v~~d~~ 19 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLDED 19 (176)
T ss_pred eeEecCCCcEEEEEEeCC
Confidence 799999999999988765
No 250
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=22.60 E-value=1e+02 Score=29.44 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=17.2
Q ss_pred EEEEEcCcceeEEEEEECCee
Q 043296 9 AIGIDLGTTYSCVGVWQNDRV 29 (650)
Q Consensus 9 vvGID~GTt~s~va~~~~g~~ 29 (650)
++-||.|+|++++++++++..
T Consensus 1 ~L~iDiGNT~ik~~~~~~~~~ 21 (206)
T PF03309_consen 1 ILLIDIGNTRIKWALFDGDKL 21 (206)
T ss_dssp EEEEEE-SSEEEEEEEETTEE
T ss_pred CEEEEECCCeEEEEEEECCEE
Confidence 478999999999999987754
No 251
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane
Probab=22.40 E-value=2.1e+02 Score=29.05 Aligned_cols=44 Identities=11% Similarity=0.206 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhcCCCCCCCCeEEE-EcCccCcHHHHHHHHhhhC
Q 043296 318 KCMEPVEKCLRDSKIDKSLVHDIVL-VGGSTRIPKVQQLLQDFFN 361 (650)
Q Consensus 318 ~i~~~i~~~l~~~~~~~~~i~~V~L-vGG~sr~p~v~~~l~~~f~ 361 (650)
-+...|+++|+++++++.+|+.++. +..++-.|.+-.+|-+.|+
T Consensus 86 v~f~av~~LL~ktgv~p~dIdiLVvncs~f~ptPSLsamIvnr~~ 130 (290)
T PF08392_consen 86 VIFGAVDDLLAKTGVKPSDIDILVVNCSLFNPTPSLSAMIVNRYG 130 (290)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEEECcCCCcCCcHHHHHHHHhC
Confidence 3457788899999999999997765 4678899999999999994
No 252
>PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A ....
Probab=22.21 E-value=88 Score=26.86 Aligned_cols=46 Identities=15% Similarity=0.223 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHhcCCCCCCCCeEEEEcCccCc--HHHHHHHHhhhCC
Q 043296 317 RKCMEPVEKCLRDSKIDKSLVHDIVLVGGSTRI--PKVQQLLQDFFNG 362 (650)
Q Consensus 317 ~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr~--p~v~~~l~~~f~~ 362 (650)
......|+++|+++++++.+|+.|..-|-++.. +.=.+.|.+.|+.
T Consensus 25 ~~~~~~i~~al~~agi~~~~I~~i~~hg~Gt~~~D~~E~~ai~~~~~~ 72 (119)
T PF02801_consen 25 AALARAIRRALADAGISPEDIDYIEAHGTGTPLGDAAEAEAIARVFGD 72 (119)
T ss_dssp HHHHHHHHHHHHHHTS-GGGEEEEE----SSHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHhhhccccccceeeeeeccccccchhhhhhhhhhhhcc
Confidence 455678999999999999999999998877665 3334567777853
No 253
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=21.98 E-value=46 Score=35.95 Aligned_cols=30 Identities=17% Similarity=0.209 Sum_probs=20.8
Q ss_pred hcCCCCCCCCeEEEEcC-ccCcH--HHHHHHHh
Q 043296 329 DSKIDKSLVHDIVLVGG-STRIP--KVQQLLQD 358 (650)
Q Consensus 329 ~~~~~~~~i~~V~LvGG-~sr~p--~v~~~l~~ 358 (650)
+.|.+...++.|+-+|| .++.| .....++.
T Consensus 382 q~GkDL~~v~~vigtGGvL~ha~~~~~~~il~~ 414 (463)
T TIGR01319 382 QIGKDLLNVKCVIGSGGVLSHASQFDMGEILKA 414 (463)
T ss_pred ccCCCchhCcEEEEeCcceeCCCCcCHHHHHhh
Confidence 34545557889999999 67777 66666644
No 254
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=21.94 E-value=49 Score=36.41 Aligned_cols=17 Identities=35% Similarity=0.425 Sum_probs=15.3
Q ss_pred EEEEcCcceeEEEEEEC
Q 043296 10 IGIDLGTTYSCVGVWQN 26 (650)
Q Consensus 10 vGID~GTt~s~va~~~~ 26 (650)
||||+|||++++++++.
T Consensus 1 lgIDiGtt~ik~~l~d~ 17 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDE 17 (481)
T ss_pred CceeecCcceEEEEECC
Confidence 69999999999999963
No 255
>PLN02914 hexokinase
Probab=21.69 E-value=2.2e+02 Score=31.33 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=21.7
Q ss_pred CCceEEEEEeCCcceEEEEEEEeC
Q 043296 197 GEKNVLIFDLGGGTFDVSLLTIEE 220 (650)
Q Consensus 197 ~~~~vlV~D~GggT~dvsv~~~~~ 220 (650)
+...+|.+|+||.++-|..+++.+
T Consensus 93 E~G~fLAlDlGGTNfRV~~V~L~g 116 (490)
T PLN02914 93 EKGLFYALDLGGTNFRVLRVQLGG 116 (490)
T ss_pred eeeEEEEEecCCceEEEEEEEecC
Confidence 456799999999999999999976
No 256
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=21.62 E-value=82 Score=34.09 Aligned_cols=21 Identities=33% Similarity=0.370 Sum_probs=18.6
Q ss_pred CCcEEEEEcCcceeEEEEEEC
Q 043296 6 EGKAIGIDLGTTYSCVGVWQN 26 (650)
Q Consensus 6 ~~~vvGID~GTt~s~va~~~~ 26 (650)
++++++||-|||.+++.+++.
T Consensus 4 ~~yIlAiDqGTTssRaivfd~ 24 (499)
T COG0554 4 DKYILAIDQGTTSSRAIVFDE 24 (499)
T ss_pred ccEEEEEecCCcceeEEEECC
Confidence 689999999999999988843
No 257
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=21.42 E-value=1.1e+03 Score=27.50 Aligned_cols=55 Identities=22% Similarity=0.375 Sum_probs=44.4
Q ss_pred ccCHHHHHHHHHHHHHHHHHHcCCC------------CcCHHHHHHHHHHHHHhHHHHHHHHhcCCC
Q 043296 567 KLAAADKQKIEKAVDETVEWLDGNQ------------LAEVDEFEDKLKELEGLCNPIIAKMYQGDG 621 (650)
Q Consensus 567 ~~~~~~~~~i~~~l~e~~~WL~~~~------------~a~~~~~~~kl~eL~~~~~~i~~r~~e~~~ 621 (650)
.++..++..|.+.+.+.-.|+.+.. .-..+++.+|.+.|...+.-...|+.-+-.
T Consensus 774 ~ft~~e~~~L~k~i~~t~~W~~~~~~~~~k~~k~edp~~k~kei~~K~k~Ldrev~~~lnK~k~~~~ 840 (902)
T KOG0104|consen 774 IFTKTEIDTLEKVIAKTTAWLNDRLDLFEKKAKTEDPVLKVKEIEEKAKSLDREVLYLLNKLKIRKP 840 (902)
T ss_pred chhhhhHHHHHHHHHHhHHHhhhhHHHHHhhhcccCccccHHHHHHHHHhhHHHHHHHHHHhhccCc
Confidence 4677889999999999999998631 125789999999999988888888776543
No 258
>PRK13324 pantothenate kinase; Reviewed
Probab=21.38 E-value=99 Score=30.89 Aligned_cols=20 Identities=30% Similarity=0.650 Sum_probs=17.7
Q ss_pred EEEEEcCcceeEEEEEECCe
Q 043296 9 AIGIDLGTTYSCVGVWQNDR 28 (650)
Q Consensus 9 vvGID~GTt~s~va~~~~g~ 28 (650)
++.||.|+|+++.++++++.
T Consensus 2 iL~iDiGNT~ik~gl~~~~~ 21 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDGDR 21 (258)
T ss_pred EEEEEeCCCceEEEEEECCE
Confidence 78999999999999998554
No 259
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=21.33 E-value=99 Score=30.69 Aligned_cols=44 Identities=18% Similarity=0.269 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCCeEEEEcCccC
Q 043296 305 RARFEELNMDLFRKCMEPVEKCLRDSKIDKSLVHDIVLVGGSTR 348 (650)
Q Consensus 305 r~~fe~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~sr 348 (650)
++..+.+...++-..+..|+..+++.......-..++++||.++
T Consensus 181 k~T~~aiqsG~v~g~~~~i~~~~~~~k~~~~~~~~~vltGg~~~ 224 (251)
T COG1521 181 KNTVEAIQSGVVYGYVGLIEGLLKEIKEELKGGDAVVLTGGLAK 224 (251)
T ss_pred cchHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCchH
Confidence 45566777777777777777777665432223467999999864
No 260
>PRK13321 pantothenate kinase; Reviewed
Probab=21.28 E-value=3.4e+02 Score=26.97 Aligned_cols=17 Identities=18% Similarity=0.589 Sum_probs=15.7
Q ss_pred EEEEEeCCcceEEEEEE
Q 043296 201 VLIFDLGGGTFDVSLLT 217 (650)
Q Consensus 201 vlV~D~GggT~dvsv~~ 217 (650)
+|.+|+|++++-+.++.
T Consensus 2 iL~IDIGnT~ik~gl~~ 18 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFD 18 (256)
T ss_pred EEEEEECCCeEEEEEEE
Confidence 58899999999999997
No 261
>PF12401 DUF3662: Protein of unknown function (DUF2662) ; InterPro: IPR022128 This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with PF00498 from PFAM. ; PDB: 2LC0_A.
Probab=21.12 E-value=3.6e+02 Score=23.15 Aligned_cols=87 Identities=15% Similarity=0.218 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHccCCCceEEEEcccccCeeEEEEEcHHHHHHHHH---HHH
Q 043296 240 DNRLVNHFVAEFRRKHKKDISGNARALRRLRTACERAKRTLSSTTQTTIEIDSLYEGIDFYATITRARFEELNM---DLF 316 (650)
Q Consensus 240 d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~fe~~~~---~~~ 316 (650)
+..|..++-.-|.+.++..+ .......+|.++++.....++..... + -..|.+.++.++++.+.. .+.
T Consensus 5 E~~lE~~v~g~Far~F~~~v-qPvEIa~~L~remd~~a~~~~~~r~~---a-----PN~y~V~Ls~~D~~~l~~~~~~l~ 75 (116)
T PF12401_consen 5 ERRLERAVEGAFARVFRSEV-QPVEIAKALRREMDDQARVVSRGRTL---A-----PNVYTVELSPEDYERLSPWGDRLA 75 (116)
T ss_dssp ----SS--STHHHHHHTTSS--THHHHHHHHHHHHHT-B---TT--B-----------EEEEEEEHHHHHHH-S-SHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHHHHhCCeecCCCCEE---c-----CeeEEEEECHHHHHHHhhhHHHHH
Confidence 33444444444444444332 12344566777777665555544321 1 235778999999999876 677
Q ss_pred hHHHHHHHHHHHhcCCCCC
Q 043296 317 RKCMEPVEKCLRDSKIDKS 335 (650)
Q Consensus 317 ~~i~~~i~~~l~~~~~~~~ 335 (650)
+++.+.+.+.....++...
T Consensus 76 ~el~~~l~~~a~~qgy~~~ 94 (116)
T PF12401_consen 76 RELADYLAEHAREQGYTFV 94 (116)
T ss_dssp HHHHHHHHHHHHHHT-B-S
T ss_pred HHHHHHHHHHHHHCCCeec
Confidence 7888888888877776543
No 262
>PLN02362 hexokinase
Probab=20.61 E-value=2.9e+02 Score=30.65 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=22.1
Q ss_pred CCceEEEEEeCCcceEEEEEEEeCC
Q 043296 197 GEKNVLIFDLGGGTFDVSLLTIEEG 221 (650)
Q Consensus 197 ~~~~vlV~D~GggT~dvsv~~~~~~ 221 (650)
+...+|.+|+||.++-|..+++.++
T Consensus 93 E~G~fLAlDlGGTNfRV~~V~L~g~ 117 (509)
T PLN02362 93 EIGTYYALDLGGTNFRVLRVQLGGQ 117 (509)
T ss_pred cceeEEEEecCCceEEEEEEEecCC
Confidence 4567999999999999999999864
No 263
>COG2410 Predicted nuclease (RNAse H fold) [General function prediction only]
Probab=20.58 E-value=1.8e+02 Score=26.78 Aligned_cols=31 Identities=32% Similarity=0.402 Sum_probs=25.1
Q ss_pred cEEEEEcCcce-eEEEEEECCeeEEEecCCCC
Q 043296 8 KAIGIDLGTTY-SCVGVWQNDRVEIIANDQGN 38 (650)
Q Consensus 8 ~vvGID~GTt~-s~va~~~~g~~~ii~~~~g~ 38 (650)
.+.|||+|--. +++|++.+|.++++..+..+
T Consensus 2 my~GIDla~k~~tavavl~~~~~~~i~~~s~~ 33 (178)
T COG2410 2 MYAGIDLAVKRSTAVAVLIEGRIEIISAWSSR 33 (178)
T ss_pred cccccccccCCCceEEEEECCEEEEEEccccc
Confidence 47899998765 57888899999999877663
No 264
>COG5418 Predicted secreted protein [Function unknown]
Probab=20.45 E-value=2.2e+02 Score=25.38 Aligned_cols=69 Identities=20% Similarity=0.444 Sum_probs=40.3
Q ss_pred HHHHHHHHccCCCc--eEEEEccc---ccCeeEEEEEcHHHHHHH-HHHHHhHHHHHHHHHHHhcCCCCCCCCeEEEEc
Q 043296 272 ACERAKRTLSSTTQ--TTIEIDSL---YEGIDFYATITRARFEEL-NMDLFRKCMEPVEKCLRDSKIDKSLVHDIVLVG 344 (650)
Q Consensus 272 ~~e~~K~~ls~~~~--~~~~i~~~---~~~~~~~~~itr~~fe~~-~~~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvG 344 (650)
.+..+++.|+.++. .-+.+++. +-+.+ +-.+||++|+.. .+.+++++.++|-+.|++-. ++.+ .++++|
T Consensus 30 ~~~ev~~~l~~npk~~~IiqlPCPE~~yLg~~-R~~~tke~~d~~~yRr~c~ki~~pi~~~l~e~k--~d~~-kii~IG 104 (164)
T COG5418 30 TAKEVRKALPSNPKDWNIIQLPCPEFEYLGWP-RPPMTKEVFDHPGYRRVCRKIADPIGRVLEEEK--PDGI-KIIFIG 104 (164)
T ss_pred HHHHHHHhhccCCCCCceEeccCchHHhhCCC-CCCcCHHHhcchhHHHHHHHHHHHHHHHHHHhC--cCCc-eEEEEe
Confidence 56778888888753 23444431 11111 246788888754 55666777777777777633 2222 466666
No 265
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.24 E-value=6.2e+02 Score=26.81 Aligned_cols=62 Identities=15% Similarity=0.208 Sum_probs=34.5
Q ss_pred hhcccCH--HHHHHHHHHHHHHHHHHcCCC-----Cc-CHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCCC
Q 043296 564 VAGKLAA--ADKQKIEKAVDETVEWLDGNQ-----LA-EVDEFEDKLKELEGLCNPIIAKMYQGDGGDVPM 626 (650)
Q Consensus 564 ~~~~~~~--~~~~~i~~~l~e~~~WL~~~~-----~a-~~~~~~~kl~eL~~~~~~i~~r~~e~~~~~~~~ 626 (650)
+...+.| .+.+.+++++.+.++-|++-. .| ++..+.+-|.-.++. .|-.+-+.|..|+|||.
T Consensus 153 lrelv~pmekeI~elk~kl~~aE~~i~El~k~~~h~a~slh~~t~lL~L~RD~-s~~l~~leel~gd~gps 222 (542)
T KOG0993|consen 153 LRELVTPMEKEINELKKKLAKAEQRIDELSKAKHHKAESLHVFTDLLNLARDK-SEQLRQLEELDGDAGPS 222 (542)
T ss_pred HHHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhhcccchHHHHHHHHHHHhcCC-chhhhHHHHhccCCCCC
Confidence 4444444 455678888888888776521 12 556666666544444 33344455655554444
No 266
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=20.24 E-value=1.5e+02 Score=26.14 Aligned_cols=20 Identities=25% Similarity=0.290 Sum_probs=17.4
Q ss_pred EEEEEcCcceeEEEEEECCe
Q 043296 9 AIGIDLGTTYSCVGVWQNDR 28 (650)
Q Consensus 9 vvGID~GTt~s~va~~~~g~ 28 (650)
+||||+|-....+++..++.
T Consensus 1 ~vGiDv~k~~~~v~v~~~~~ 20 (144)
T PF01548_consen 1 FVGIDVSKDTHDVCVIDPNG 20 (144)
T ss_pred eEEEEcccCeEEEEEEcCCC
Confidence 69999999999999986554
No 267
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=20.11 E-value=3.5e+02 Score=27.02 Aligned_cols=46 Identities=17% Similarity=0.052 Sum_probs=33.3
Q ss_pred CCCceEEEEEeCCcceEEEEEEEeCCEEEEEEeeCCCCCChhHHHH
Q 043296 196 TGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDN 241 (650)
Q Consensus 196 ~~~~~vlV~D~GggT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~ 241 (650)
++...++.+|+|..++-+.+.+.....+.+.......--.|.-+|.
T Consensus 21 ~~~~~~~~iDiGSssi~~vv~~~~~~~~~~~~~~~~~vr~G~i~di 66 (267)
T PRK15080 21 TESPLKVGVDLGTANIVLAVLDEDGQPVAGALEWADVVRDGIVVDF 66 (267)
T ss_pred CCCCEEEEEEccCceEEEEEEcCCCCEEEEEeccccccCCCEEeeH
Confidence 3467899999999999998887665566666655555556666663
No 268
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=20.10 E-value=9.6e+02 Score=24.69 Aligned_cols=84 Identities=18% Similarity=0.324 Sum_probs=52.1
Q ss_pred CCCHHHHHHHHHHHhhhhHHhHHHHHHHHHHHhHHHHHHHHHhhccchhhhcccCHHHHHHHHHHHHHHHHHHcCCCC--
Q 043296 515 RLSKEDIERMVQEAEKYKAEDEQVKKKVEAKNKLENYAYSMRNTVKDDKVAGKLAAADKQKIEKAVDETVEWLDGNQL-- 592 (650)
Q Consensus 515 ~ls~~e~~~~~~~~~~~~~~d~~~~~~~~akN~LE~~iy~~r~~L~~~~~~~~~~~~~~~~i~~~l~e~~~WL~~~~~-- 592 (650)
..+++++.++++++.+. +...........+++.-+-+.+..++. ..+++.++...+++++.-++....
T Consensus 200 ~~d~~eL~~lk~~l~~~---~~ei~~~~~~l~e~~~~l~~l~~~I~~-------~~~~k~e~~~~I~~ae~~~~~~r~~t 269 (312)
T smart00787 200 DCDPTELDRAKEKLKKL---LQEIMIKVKKLEELEEELQELESKIED-------LTNKKSELNTEIAEAEKKLEQCRGFT 269 (312)
T ss_pred hCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 36778888877555443 333333333344455555556666654 246788899999999998887532
Q ss_pred -cCHHHHHHHHHHHHHh
Q 043296 593 -AEVDEFEDKLKELEGL 608 (650)
Q Consensus 593 -a~~~~~~~kl~eL~~~ 608 (650)
.+...++.+++.|+++
T Consensus 270 ~~Ei~~Lk~~~~~Le~l 286 (312)
T smart00787 270 FKEIEKLKEQLKLLQSL 286 (312)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 2566677777776654
Done!