BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043298
(357 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 73/162 (45%), Gaps = 19/162 (11%)
Query: 55 LEELFVFNCDSLTCIFSKYELPATLESLEVGNLPSSVKVLDVYGC--PKLESIAERLDNN 112
L EL + C LT ELP L S + + L + S+ + N
Sbjct: 152 LRELSIRACPELT------ELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANL 205
Query: 113 TSLETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSFPE--GGLPCAKLRRLGIYD 170
+L+++ I N L L +H L +L E+ +R C L ++P GG A L+RL + D
Sbjct: 206 QNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR--APLKRLILKD 262
Query: 171 CERLEALPKGLHNLSSLQELTIGG-----ELPSLEEDGLPTN 207
C L LP +H L+ L++L + G LPSL LP N
Sbjct: 263 CSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ-LPAN 303
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 93/232 (40%), Gaps = 40/232 (17%)
Query: 93 VLDVYGCPKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVS 152
+D G +L ++ LET+++ L+ LP+ + L++LRE+ IR C L
Sbjct: 110 TIDAAGLXELPDTXQQF---AGLETLTLAR-NPLRALPASIASLNRLRELSIRACPELTE 165
Query: 153 FPEGGLPCAKLRRLGIYDCERLEALPKGLHNLSSLQELTIGGELPSLEEDG---LPTNLH 209
PE P A G + +GL NL SL+ LE G LP ++
Sbjct: 166 LPE---PLASTDASGEH---------QGLVNLQSLR----------LEWTGIRSLPASIA 203
Query: 210 SLDIWGNMEIWKSMIER-GRGFHRFSSLGHLKIGGCDDDMVSFPLEDKRLGTALPLPASL 268
+L +++I S + G H L L + GC P+ R A L
Sbjct: 204 NLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR--------APL 255
Query: 269 TSLWIEDFPNLEHLSSSIVDLQNLTSLGLYNCPKLKYFPE--KGLPSSLLLL 318
L ++D NL L I L L L L C L P LP++ ++L
Sbjct: 256 KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL 307
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 64/151 (42%), Gaps = 26/151 (17%)
Query: 22 LKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKYE-LPAT-- 78
L+ L IR C + L +SG E + N SL ++ LPA+
Sbjct: 152 LRELSIRACPELTELPEPLASTDASG--------EHQGLVNLQSLRLEWTGIRSLPASIA 203
Query: 79 ----LESLEVGNLPSS-----------VKVLDVYGCPKLESIAERLDNNTSLETISIYNC 123
L+SL++ N P S ++ LD+ GC L + L+ + + +C
Sbjct: 204 NLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDC 263
Query: 124 ENLKILPSGLHKLHQLREIWIRECGNLVSFP 154
NL LP +H+L QL ++ +R C NL P
Sbjct: 264 SNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294
>pdb|3OYX|A Chain A, Haloferax Volcanii Malate Synthase MagnesiumGLYOXYLATE
COMPLEX
pdb|3OYZ|A Chain A, Haloferax Volcanii Malate Synthase PyruvateACETYL-Coa
Ternary Complex
pdb|3PUG|A Chain A, Haloferax Volcanii Malate Synthase Native At 3mm
Glyoxylate
Length = 433
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 49/118 (41%), Gaps = 13/118 (11%)
Query: 169 YDCERLEALPKGLHNLSSLQELTIGGELPSLEEDGLPTNLHSL--------DIWGNMEIW 220
YD +RL L EL +GG+ L D L L L DI +ME +
Sbjct: 299 YDGDRL-----SLEATDGGYELRVGGDARELTADELREELLGLTSYVPSMDDIVDSMEEF 353
Query: 221 KSMIERGRGFHRFSSLGHLKIGGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPN 278
++ E GRG + L+IGG + D+ + D+ A P SL E+ P+
Sbjct: 354 EAAKEAGRGAIAMTQSATLRIGGTEIDIEKDRMWDEATYQAAMTPISLFQDVYENRPD 411
>pdb|3EZS|A Chain A, Crystal Structure Of Aminotransferase Aspb (Np_207418.1)
From Helicobacter Pylori 26695 At 2.19 A Resolution
pdb|3EZS|B Chain B, Crystal Structure Of Aminotransferase Aspb (Np_207418.1)
From Helicobacter Pylori 26695 At 2.19 A Resolution
Length = 376
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 7/85 (8%)
Query: 169 YDCERLEALPKGLHNLSSLQELTIGG---ELPSLEEDGLPTNLHSLDIWGNMEIWKSMIE 225
Y ERL AL K + +L IG E P +D L + HSL+I+ +S+
Sbjct: 7 YPFERLRALLKEITPKKRGLDLGIGEPQFETPKFIQDALKNHTHSLNIYPKSAFEESLRA 66
Query: 226 RGRGFHRFSSLGHLKIGGCDDDMVS 250
RGF + KI +++++S
Sbjct: 67 AQRGFFK----RRFKIELKENELIS 87
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 108 RLDNNTSLETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSFPEGGLPCAK 162
+ D T L+T+ Y C N+ ++P+ L++ + + NLV GG P +K
Sbjct: 269 KFDEETFLKTLQDYKCTNVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSK 323
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 108 RLDNNTSLETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSFPEGGLPCAK 162
+ D T L+T+ Y C ++ ++P+ L++ + + NLV GG P +K
Sbjct: 269 KFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSK 323
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 108 RLDNNTSLETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSFPEGGLPCAK 162
+ D T L+T+ Y C ++ ++P+ L++ + + NLV GG P +K
Sbjct: 269 KFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAPLSK 323
>pdb|1XKI|A Chain A, Crystal Structure Of Human Tear LipocalinVON EBNERS GLAND
Protein
pdb|3EYC|A Chain A, New Crystal Structure Of Human Tear Lipocalin In Complex
With 1,4-Butanediol In Space Group P21
pdb|3EYC|B Chain B, New Crystal Structure Of Human Tear Lipocalin In Complex
With 1,4-Butanediol In Space Group P21
pdb|3EYC|C Chain C, New Crystal Structure Of Human Tear Lipocalin In Complex
With 1,4-Butanediol In Space Group P21
pdb|3EYC|D Chain D, New Crystal Structure Of Human Tear Lipocalin In Complex
With 1,4-Butanediol In Space Group P21
Length = 162
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 39 EEGIQCSSGRRYTSSLL--EELFVFNCDSLTCIFSKYELPATLESLEVGNLPSSVKVLDV 96
+E IQ SG Y ++ E N +S+T P TL +LE GNL + V +L
Sbjct: 3 DEEIQDVSGTWYLKAMTVDREFPEMNLESVT--------PMTLTTLEGGNLEAKVTMLIS 54
Query: 97 YGCPKLESIAERLD 110
C +++++ E+ D
Sbjct: 55 GRCQEVKAVLEKTD 68
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Query: 144 IRECGNLVSFPEGGLP--CAKLRRLGIYD---CERLEALPKGLHNLSSLQELTIGGELPS 198
++ GN SF E LP +LR L D C+ + P ++LSSLQ L +
Sbjct: 450 LKMAGN--SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK 507
Query: 199 LEEDGLPTNLHSLD-IWGNMEIW 220
DG+ L SL IW + W
Sbjct: 508 SVPDGIFDRLTSLQKIWLHTNPW 530
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 14/65 (21%)
Query: 164 RRLGIYDCERLEALPKGLHNLSSLQELTIGGELPSLEEDGLPTNLHSLDIWGNMEIWKSM 223
R IY+C +SL E+ +L LEED LP+ ++D+ +++
Sbjct: 75 RDEAIYEC----------TATNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLKV---- 120
Query: 224 IERGR 228
+E+GR
Sbjct: 121 VEKGR 125
>pdb|4DQ0|A Chain A, The Crystal Structure Of Tellurite Resistance Protein From
Escherichia Coli O157:h7 Str. Sakai
pdb|4DQ0|B Chain B, The Crystal Structure Of Tellurite Resistance Protein From
Escherichia Coli O157:h7 Str. Sakai
pdb|4DQ0|C Chain C, The Crystal Structure Of Tellurite Resistance Protein From
Escherichia Coli O157:h7 Str. Sakai
pdb|4DQ0|D Chain D, The Crystal Structure Of Tellurite Resistance Protein From
Escherichia Coli O157:h7 Str. Sakai
Length = 200
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 15/68 (22%)
Query: 273 IEDFPNLEHLSSSIVDLQNLTSLGLYNCPKLKYFPEKGLPSSLLLLWIE-----GCPLIE 327
I+ NL++L + +VDL NLT G Y+ + S+++L+++E G
Sbjct: 74 IKSIENLDNLHTRVVDLNNLTFDGEYDF----------ILSTVVLMFLEAKTIPGLIANM 123
Query: 328 EKCRKDGG 335
++C K GG
Sbjct: 124 QRCTKPGG 131
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 66/164 (40%), Gaps = 30/164 (18%)
Query: 114 SLETISIYNCENLKILPSGLHKLHQLREIWIRE--CGNLVSFPEGGLPCAKLRRLGIYDC 171
SL T+ +++ + L +LRE+W+R ++ S+ +P LRRL + +
Sbjct: 84 SLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVP--SLRRLDLGEL 141
Query: 172 ERL----EALPKGLHNLS-------------------SLQELTIGGELPSLEEDGLPTNL 208
+RL EA +GL NL L+EL + G L G L
Sbjct: 142 KRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGL 201
Query: 209 HSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDMVSFP 252
SL M + IER F SL L + ++++S P
Sbjct: 202 TSLRKLWLMHAQVATIERN-AFDDLKSLEELNLS--HNNLMSLP 242
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 22/139 (15%)
Query: 113 TSLETISIYNCENLKILPSG-LHKLHQLREIWIRE--CGNLVSFPEGGLPCAKLRRLGIY 169
SL T+ +++ L ++PSG L +LRE+W+R ++ S+ +P L RL +
Sbjct: 123 ASLNTLELFD-NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVP--SLMRLDLG 179
Query: 170 DCERLEALPKG-LHNLSSLQELTIG----GELPSLEEDGLPTNLHSLDIWGNM--EIWKS 222
+ ++LE + +G L +L+ L +G ++P+L L L++ GN EI
Sbjct: 180 ELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTP---LVGLEELEMSGNHFPEI--- 233
Query: 223 MIERGRGFHRFSSLGHLKI 241
R FH SSL L +
Sbjct: 234 ---RPGSFHGLSSLKKLWV 249
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 114 SLETISIYNCENLKILPSGLHKLHQLREIWIRE--CGNLVSFPEGGLPCAKLRRLGIYDC 171
SL T+ +++ + L +LRE+W+R ++ S+ +P LRRL + +
Sbjct: 84 SLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVP--SLRRLDLGEL 141
Query: 172 ERLEALPK-GLHNLSSLQELTIG 193
+RLE + + L +L+ L +G
Sbjct: 142 KRLEYISEAAFEGLVNLRYLNLG 164
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.140 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,446,559
Number of Sequences: 62578
Number of extensions: 501770
Number of successful extensions: 859
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 842
Number of HSP's gapped (non-prelim): 20
length of query: 357
length of database: 14,973,337
effective HSP length: 100
effective length of query: 257
effective length of database: 8,715,537
effective search space: 2239893009
effective search space used: 2239893009
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)