Query 043298
Match_columns 357
No_of_seqs 180 out of 2129
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 03:33:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043298.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043298hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.9 5.1E-22 1.1E-26 206.4 19.2 274 20-329 589-909 (1153)
2 PLN03210 Resistant to P. syrin 99.9 6.4E-22 1.4E-26 205.6 19.0 120 54-178 590-721 (1153)
3 PLN00113 leucine-rich repeat r 99.9 7.6E-22 1.6E-26 203.9 15.8 259 19-300 92-366 (968)
4 PLN00113 leucine-rich repeat r 99.9 2.4E-21 5.2E-26 200.2 15.9 163 19-194 117-293 (968)
5 KOG4194 Membrane glycoprotein 99.8 2.4E-22 5.3E-27 182.9 0.0 277 19-323 77-426 (873)
6 KOG4194 Membrane glycoprotein 99.8 1.6E-21 3.5E-26 177.6 2.6 276 19-322 50-374 (873)
7 KOG0444 Cytoskeletal regulator 99.7 5.5E-20 1.2E-24 169.1 -4.9 221 91-328 152-377 (1255)
8 PRK15387 E3 ubiquitin-protein 99.7 6.2E-16 1.3E-20 151.3 15.6 240 2-299 206-454 (788)
9 KOG0472 Leucine-rich repeat pr 99.7 5.4E-19 1.2E-23 154.7 -7.4 248 21-300 46-307 (565)
10 KOG0444 Cytoskeletal regulator 99.7 8.1E-19 1.8E-23 161.5 -6.8 255 19-304 31-304 (1255)
11 KOG0618 Serine/threonine phosp 99.7 4.8E-18 1E-22 162.5 -2.8 202 111-330 239-468 (1081)
12 KOG0472 Leucine-rich repeat pr 99.6 2.8E-17 6.1E-22 144.1 -5.3 139 124-275 398-537 (565)
13 PRK15387 E3 ubiquitin-protein 99.6 1.3E-14 2.8E-19 142.2 12.0 213 9-276 233-455 (788)
14 PRK15370 E3 ubiquitin-protein 99.5 3.1E-14 6.6E-19 140.2 8.1 243 20-324 178-426 (754)
15 PRK15370 E3 ubiquitin-protein 99.5 1.2E-13 2.5E-18 136.1 11.7 238 2-300 183-425 (754)
16 KOG0618 Serine/threonine phosp 99.5 3.1E-15 6.7E-20 143.5 -2.1 218 88-325 240-488 (1081)
17 KOG4237 Extracellular matrix p 99.4 7.5E-15 1.6E-19 128.7 -6.7 140 9-172 57-199 (498)
18 KOG0617 Ras suppressor protein 99.3 6.2E-14 1.3E-18 109.7 -4.5 130 91-224 58-190 (264)
19 KOG0617 Ras suppressor protein 99.2 2.2E-13 4.8E-18 106.6 -3.5 159 112-308 32-190 (264)
20 KOG4341 F-box protein containi 99.2 4.5E-13 9.6E-18 118.5 -6.2 285 21-330 139-443 (483)
21 KOG4237 Extracellular matrix p 99.1 5.5E-12 1.2E-16 110.9 -4.0 218 9-242 78-354 (498)
22 KOG4341 F-box protein containi 99.0 2E-12 4.3E-17 114.5 -8.0 281 2-305 143-441 (483)
23 KOG4658 Apoptotic ATPase [Sign 98.9 3E-10 6.5E-15 114.0 2.6 79 91-170 573-651 (889)
24 cd00116 LRR_RI Leucine-rich re 98.9 8.1E-11 1.7E-15 106.5 -1.9 13 19-31 22-34 (319)
25 KOG4658 Apoptotic ATPase [Sign 98.9 6.9E-10 1.5E-14 111.4 3.8 247 54-330 524-787 (889)
26 cd00116 LRR_RI Leucine-rich re 98.8 3.3E-10 7.2E-15 102.5 -1.6 83 112-194 80-174 (319)
27 KOG0532 Leucine-rich repeat (L 98.8 2.7E-10 5.9E-15 104.8 -3.2 185 118-323 80-270 (722)
28 PRK15386 type III secretion pr 98.6 3.7E-07 8E-12 83.2 10.3 58 91-154 54-111 (426)
29 KOG0532 Leucine-rich repeat (L 98.5 4.2E-09 9.1E-14 97.2 -3.4 189 91-300 77-270 (722)
30 KOG1259 Nischarin, modulator o 98.5 5.6E-08 1.2E-12 83.3 3.4 222 54-300 183-409 (490)
31 KOG1259 Nischarin, modulator o 98.5 2.5E-08 5.4E-13 85.4 1.2 130 114-252 285-415 (490)
32 PF14580 LRR_9: Leucine-rich r 98.5 2.9E-08 6.3E-13 80.6 1.5 126 112-243 18-149 (175)
33 KOG3207 Beta-tubulin folding c 98.5 8.2E-09 1.8E-13 92.4 -2.2 153 86-243 170-335 (505)
34 PRK15386 type III secretion pr 98.5 1.2E-06 2.6E-11 79.9 10.4 90 112-215 51-141 (426)
35 COG4886 Leucine-rich repeat (L 98.5 1.8E-07 3.8E-12 87.4 5.1 100 91-194 118-218 (394)
36 COG4886 Leucine-rich repeat (L 98.4 1.8E-07 3.9E-12 87.3 4.2 168 113-299 116-286 (394)
37 PF14580 LRR_9: Leucine-rich r 98.4 1.1E-07 2.3E-12 77.3 1.8 122 54-193 20-148 (175)
38 KOG2120 SCF ubiquitin ligase, 98.2 2E-08 4.3E-13 85.9 -6.5 37 264-300 336-373 (419)
39 KOG3207 Beta-tubulin folding c 98.2 5.3E-07 1.1E-11 81.1 0.8 173 135-323 119-311 (505)
40 KOG2120 SCF ubiquitin ligase, 98.0 1.3E-07 2.8E-12 81.0 -5.1 176 91-278 187-375 (419)
41 PF13855 LRR_8: Leucine rich r 97.9 1.9E-05 4E-10 52.5 4.9 59 20-99 1-59 (61)
42 PF13855 LRR_8: Leucine rich r 97.8 2.5E-05 5.5E-10 51.8 4.3 55 115-171 3-59 (61)
43 KOG0531 Protein phosphatase 1, 97.8 1.9E-06 4.2E-11 80.8 -1.8 75 91-170 97-171 (414)
44 PLN03150 hypothetical protein; 97.7 5E-05 1.1E-09 74.9 6.2 79 139-217 420-501 (623)
45 PLN03150 hypothetical protein; 97.7 7.7E-05 1.7E-09 73.6 7.4 107 115-221 420-530 (623)
46 KOG1947 Leucine rich repeat pr 97.6 2.2E-06 4.8E-11 82.0 -5.7 191 113-330 243-444 (482)
47 KOG1859 Leucine-rich repeat pr 97.6 1.5E-06 3.3E-11 82.9 -6.5 120 91-217 166-290 (1096)
48 KOG1909 Ran GTPase-activating 97.5 2.6E-06 5.7E-11 74.6 -5.7 136 160-300 156-308 (382)
49 KOG0531 Protein phosphatase 1, 97.5 2.3E-05 5.1E-10 73.6 -0.2 206 91-320 74-284 (414)
50 KOG1909 Ran GTPase-activating 97.4 2.2E-05 4.8E-10 68.9 -0.8 186 134-324 89-309 (382)
51 KOG1947 Leucine rich repeat pr 97.4 7.4E-06 1.6E-10 78.4 -4.5 137 19-170 187-330 (482)
52 KOG3665 ZYG-1-like serine/thre 97.0 0.00034 7.3E-09 69.3 2.0 36 264-300 248-285 (699)
53 PF12799 LRR_4: Leucine Rich r 96.9 0.0009 2E-08 40.9 2.6 38 267-306 2-39 (44)
54 PF12799 LRR_4: Leucine Rich r 96.7 0.0023 4.9E-08 39.1 3.5 31 115-146 3-33 (44)
55 KOG2982 Uncharacterized conser 96.4 0.0035 7.5E-08 54.4 4.0 179 112-301 70-260 (418)
56 KOG3665 ZYG-1-like serine/thre 96.4 0.0014 3.1E-08 65.0 1.9 102 161-275 122-229 (699)
57 KOG1644 U2-associated snRNP A' 96.4 0.0086 1.9E-07 49.1 5.8 12 264-275 138-149 (233)
58 KOG1859 Leucine-rich repeat pr 96.4 0.00018 3.9E-09 69.2 -4.4 121 186-324 165-290 (1096)
59 KOG2123 Uncharacterized conser 96.3 0.0002 4.4E-09 61.2 -4.0 97 54-167 20-123 (388)
60 KOG1644 U2-associated snRNP A' 95.9 0.017 3.6E-07 47.5 5.3 98 114-215 43-149 (233)
61 KOG4579 Leucine-rich repeat (L 95.7 0.00047 1E-08 52.8 -4.3 77 115-194 55-132 (177)
62 KOG2123 Uncharacterized conser 95.5 0.00077 1.7E-08 57.8 -4.1 98 91-193 21-125 (388)
63 KOG2982 Uncharacterized conser 95.0 0.011 2.3E-07 51.6 1.3 79 91-171 73-156 (418)
64 KOG4579 Leucine-rich repeat (L 94.3 0.0052 1.1E-07 47.2 -1.9 77 91-170 55-132 (177)
65 PF13306 LRR_5: Leucine rich r 94.2 0.26 5.7E-06 37.6 7.4 10 160-169 34-43 (129)
66 KOG3864 Uncharacterized conser 94.1 0.0096 2.1E-07 48.8 -0.9 77 162-243 102-185 (221)
67 PF13306 LRR_5: Leucine rich r 93.9 0.54 1.2E-05 35.8 8.7 80 157-243 8-90 (129)
68 KOG2739 Leucine-rich acidic nu 93.9 0.026 5.5E-07 48.2 1.1 36 205-243 115-152 (260)
69 PF13504 LRR_7: Leucine rich r 93.4 0.043 9.4E-07 25.8 1.0 16 21-37 2-17 (17)
70 PF00560 LRR_1: Leucine Rich R 92.8 0.069 1.5E-06 27.0 1.3 20 162-182 1-20 (22)
71 KOG3864 Uncharacterized conser 92.3 0.035 7.6E-07 45.6 -0.3 87 207-303 102-189 (221)
72 COG5238 RNA1 Ran GTPase-activa 91.9 0.14 3.1E-06 44.2 2.8 178 91-276 32-252 (388)
73 COG5238 RNA1 Ran GTPase-activa 89.9 0.061 1.3E-06 46.4 -1.1 148 17-174 89-255 (388)
74 KOG2739 Leucine-rich acidic nu 89.8 0.22 4.8E-06 42.6 2.2 105 19-147 42-153 (260)
75 smart00367 LRR_CC Leucine-rich 86.0 0.41 8.9E-06 25.2 1.0 18 313-330 2-19 (26)
76 smart00370 LRR Leucine-rich re 83.1 0.74 1.6E-05 24.1 1.2 19 20-39 2-20 (26)
77 smart00369 LRR_TYP Leucine-ric 83.1 0.74 1.6E-05 24.1 1.2 19 20-39 2-20 (26)
78 smart00364 LRR_BAC Leucine-ric 70.9 2.5 5.5E-05 22.3 1.0 18 20-38 2-19 (26)
79 PF05725 FNIP: FNIP Repeat; I 61.1 13 0.00028 22.3 3.0 29 91-121 14-42 (44)
80 PF13516 LRR_6: Leucine Rich r 50.6 9.9 0.00021 19.2 1.1 12 20-31 2-13 (24)
81 KOG0473 Leucine-rich repeat pr 46.3 0.84 1.8E-05 38.7 -5.2 79 91-172 44-122 (326)
82 KOG0473 Leucine-rich repeat pr 34.2 1.9 4E-05 36.7 -5.0 77 115-194 44-120 (326)
83 smart00365 LRR_SD22 Leucine-ri 32.9 31 0.00068 18.2 1.3 11 21-31 3-13 (26)
84 smart00368 LRR_RI Leucine rich 24.3 47 0.001 17.6 1.1 12 20-31 2-13 (28)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=5.1e-22 Score=206.37 Aligned_cols=274 Identities=21% Similarity=0.319 Sum_probs=172.5
Q ss_pred cccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCC-CCCCcccceecc------------c
Q 043298 20 SSLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKY-ELPATLESLEVG------------N 86 (357)
Q Consensus 20 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~-~~~~~L~~L~l~------------~ 86 (357)
++|+.|++.+++ ++.+|.. + ... +|++|++.+ +.+..+ +.. ..+.+|+.|+++ .
T Consensus 589 ~~Lr~L~~~~~~-l~~lP~~-------f-~~~--~L~~L~L~~-s~l~~L-~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~ 655 (1153)
T PLN03210 589 PKLRLLRWDKYP-LRCMPSN-------F-RPE--NLVKLQMQG-SKLEKL-WDGVHSLTGLRNIDLRGSKNLKEIPDLSM 655 (1153)
T ss_pred cccEEEEecCCC-CCCCCCc-------C-Ccc--CCcEEECcC-cccccc-ccccccCCCCCEEECCCCCCcCcCCcccc
Confidence 456666666554 5555554 1 223 555666655 234444 433 445555555554 3
Q ss_pred CCCcceEEEecCCCCchhchhccCCCCcccEEEcccccCccccCccccCccccceeecccCCCccccCCCCcCcccccEE
Q 043298 87 LPSSVKVLDVYGCPKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSFPEGGLPCAKLRRL 166 (357)
Q Consensus 87 l~~~L~~L~l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L 166 (357)
+++ |++|++++|..+..+|..++.+.+|+.|++++|+.++.+|..+ ++++|+.|++++|..+..+|.. .++|+.|
T Consensus 656 l~~-Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L 730 (1153)
T PLN03210 656 ATN-LETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWL 730 (1153)
T ss_pred CCc-ccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCee
Confidence 455 7777777777777777666556667777777777777776544 5667777777777666555532 2355566
Q ss_pred EeecCCCcccccccc------------------------------cCCCCCceEEecC--ccCCccC-CCCCCccceEEe
Q 043298 167 GIYDCERLEALPKGL------------------------------HNLSSLQELTIGG--ELPSLEE-DGLPTNLHSLDI 213 (357)
Q Consensus 167 ~l~~~~~~~~~~~~~------------------------------~~l~~L~~L~l~~--~~~~~~~-~~~~~~L~~L~l 213 (357)
+++++. +..+|..+ ...++|+.|++++ ....+|. .+.+++|+.|++
T Consensus 731 ~L~~n~-i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~L 809 (1153)
T PLN03210 731 DLDETA-IEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEI 809 (1153)
T ss_pred ecCCCc-cccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEEC
Confidence 655533 33333211 1124566677665 3444554 455678888888
Q ss_pred cCCcchhhhhhhcccccCCCCCcceEEeecCCCCCCcCccccccccCCCCCCCCccEEEcCccccCcccccccccccccC
Q 043298 214 WGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLEHLSSSIVDLQNLT 293 (357)
Q Consensus 214 ~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~ 293 (357)
++|..+..+|.. ..+++|+.|++++ |..+..++. .+.+|+.|++++ +.++.+|.++..+++|+
T Consensus 810 s~C~~L~~LP~~-----~~L~sL~~L~Ls~-c~~L~~~p~----------~~~nL~~L~Ls~-n~i~~iP~si~~l~~L~ 872 (1153)
T PLN03210 810 ENCINLETLPTG-----INLESLESLDLSG-CSRLRTFPD----------ISTNISDLNLSR-TGIEEVPWWIEKFSNLS 872 (1153)
T ss_pred CCCCCcCeeCCC-----CCccccCEEECCC-CCccccccc----------cccccCEeECCC-CCCccChHHHhcCCCCC
Confidence 888777776632 2577888888888 777776664 336777888877 56777777777788888
Q ss_pred eeccccCCCCcccCCC-CCccCCceEEecCChhhHHH
Q 043298 294 SLGLYNCPKLKYFPEK-GLPSSLLLLWIEGCPLIEEK 329 (357)
Q Consensus 294 ~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~~l~~~ 329 (357)
.|++.+|++++.++.. ..+++|+.+++++|++|+++
T Consensus 873 ~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 873 FLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred EEECCCCCCcCccCcccccccCCCeeecCCCcccccc
Confidence 8888888888777663 23567777788888777643
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=6.4e-22 Score=205.59 Aligned_cols=120 Identities=29% Similarity=0.499 Sum_probs=55.1
Q ss_pred CccEEEEecCCCccccccCCCCCCcccceecc------------cCCCcceEEEecCCCCchhchhccCCCCcccEEEcc
Q 043298 54 LLEELFVFNCDSLTCIFSKYELPATLESLEVG------------NLPSSVKVLDVYGCPKLESIAERLDNNTSLETISIY 121 (357)
Q Consensus 54 ~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~------------~l~~~L~~L~l~~c~~~~~~~~~~~~~~~L~~L~l~ 121 (357)
+|+.|.+.++ .++.+ |....+.+|+.|++. .+++ |++|++++|..++.+|... .+.+|+.|++.
T Consensus 590 ~Lr~L~~~~~-~l~~l-P~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~-Lk~L~Ls~~~~l~~ip~ls-~l~~Le~L~L~ 665 (1153)
T PLN03210 590 KLRLLRWDKY-PLRCM-PSNFRPENLVKLQMQGSKLEKLWDGVHSLTG-LRNIDLRGSKNLKEIPDLS-MATNLETLKLS 665 (1153)
T ss_pred ccEEEEecCC-CCCCC-CCcCCccCCcEEECcCccccccccccccCCC-CCEEECCCCCCcCcCCccc-cCCcccEEEec
Confidence 3455555442 23444 444334444444444 2344 5555555444444444322 33345555555
Q ss_pred cccCccccCccccCccccceeecccCCCccccCCCCcCcccccEEEeecCCCccccc
Q 043298 122 NCENLKILPSGLHKLHQLREIWIRECGNLVSFPEGGLPCAKLRRLGIYDCERLEALP 178 (357)
Q Consensus 122 ~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 178 (357)
+|..+..+|..++.+++|+.|++++|+.++.+|... .+++|+.|++++|..+..+|
T Consensus 666 ~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p 721 (1153)
T PLN03210 666 DCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFP 721 (1153)
T ss_pred CCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccc
Confidence 554444445444455555555555554444444432 34445555555544444443
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.87 E-value=7.6e-22 Score=203.91 Aligned_cols=259 Identities=19% Similarity=0.144 Sum_probs=152.1
Q ss_pred ccccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCCCCCCcccceecc-------------
Q 043298 19 PSSLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKYELPATLESLEVG------------- 85 (357)
Q Consensus 19 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~------------- 85 (357)
+++|+.|++++|.--..+|.. ++..++ +|++|+++++. ++...|. ..+++|+.|+++
T Consensus 92 l~~L~~L~Ls~n~~~~~ip~~------~~~~l~--~L~~L~Ls~n~-l~~~~p~-~~l~~L~~L~Ls~n~~~~~~p~~~~ 161 (968)
T PLN00113 92 LPYIQTINLSNNQLSGPIPDD------IFTTSS--SLRYLNLSNNN-FTGSIPR-GSIPNLETLDLSNNMLSGEIPNDIG 161 (968)
T ss_pred CCCCCEEECCCCccCCcCChH------HhccCC--CCCEEECcCCc-cccccCc-cccCCCCEEECcCCcccccCChHHh
Confidence 677888888777622356665 455666 78888887743 4333132 345667776665
Q ss_pred cCCCcceEEEecCCCCchhchhccCCCCcccEEEcccccCccccCccccCccccceeecccCCCccccCCCCcCcccccE
Q 043298 86 NLPSSVKVLDVYGCPKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSFPEGGLPCAKLRR 165 (357)
Q Consensus 86 ~l~~~L~~L~l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~ 165 (357)
.+++ |++|++++|.....+|..++.+.+|++|++++|.....+|..++.+++|+.|++++|.....+|..+..+++|++
T Consensus 162 ~l~~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 240 (968)
T PLN00113 162 SFSS-LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNH 240 (968)
T ss_pred cCCC-CCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCE
Confidence 4555 777777775433455555545566777777764444455666667777777777766555556666666677777
Q ss_pred EEeecCCCcccccccccCCCCCceEEecC-ccC-CccC-CCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEee
Q 043298 166 LGIYDCERLEALPKGLHNLSSLQELTIGG-ELP-SLEE-DGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIG 242 (357)
Q Consensus 166 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~-~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~ 242 (357)
|++++|.....+|..++.+++|++|++.+ .+. .+|. ...+++|+.|++++|.....++ ..+..+++|+.|+++
T Consensus 241 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p----~~~~~l~~L~~L~l~ 316 (968)
T PLN00113 241 LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP----ELVIQLQNLEILHLF 316 (968)
T ss_pred EECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCC----hhHcCCCCCcEEECC
Confidence 77777665556666667777777777766 333 2222 3345666777776643322222 134566666666666
Q ss_pred cCCCCCCcCccccccccCCCCCCCCccEEEcCccccCcccccccccccccCeeccccC
Q 043298 243 GCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLEHLSSSIVDLQNLTSLGLYNC 300 (357)
Q Consensus 243 ~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c 300 (357)
+ +.-...++... ..+++|+.|++++|.....+|..+..+++|+.|++.+|
T Consensus 317 ~-n~~~~~~~~~~-------~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n 366 (968)
T PLN00113 317 S-NNFTGKIPVAL-------TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN 366 (968)
T ss_pred C-CccCCcCChhH-------hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCC
Confidence 6 33222333332 34556666666664433345555555666666666553
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.86 E-value=2.4e-21 Score=200.21 Aligned_cols=163 Identities=20% Similarity=0.173 Sum_probs=73.4
Q ss_pred ccccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCC-CCCCcccceecc------------
Q 043298 19 PSSLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKY-ELPATLESLEVG------------ 85 (357)
Q Consensus 19 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~-~~~~~L~~L~l~------------ 85 (357)
+++|++|++++|.-...+|. ..+. +|++|+++++. +....|.. ..+++|+.|+++
T Consensus 117 l~~L~~L~Ls~n~l~~~~p~---------~~l~--~L~~L~Ls~n~-~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~ 184 (968)
T PLN00113 117 SSSLRYLNLSNNNFTGSIPR---------GSIP--NLETLDLSNNM-LSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL 184 (968)
T ss_pred CCCCCEEECcCCccccccCc---------cccC--CCCEEECcCCc-ccccCChHHhcCCCCCEEECccCcccccCChhh
Confidence 45666666666542222332 1223 55555555532 22211332 444555555554
Q ss_pred -cCCCcceEEEecCCCCchhchhccCCCCcccEEEcccccCccccCccccCccccceeecccCCCccccCCCCcCccccc
Q 043298 86 -NLPSSVKVLDVYGCPKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSFPEGGLPCAKLR 164 (357)
Q Consensus 86 -~l~~~L~~L~l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~ 164 (357)
.+++ |++|++++|.....+|...+.+.+|+.|+++++.....+|..++++++|+.|++++|.....+|..+..+++|+
T Consensus 185 ~~l~~-L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 263 (968)
T PLN00113 185 TNLTS-LEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQ 263 (968)
T ss_pred hhCcC-CCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCC
Confidence 3344 55555555433333444443444455555555322223444445555555555554433333444444444555
Q ss_pred EEEeecCCCcccccccccCCCCCceEEecC
Q 043298 165 RLGIYDCERLEALPKGLHNLSSLQELTIGG 194 (357)
Q Consensus 165 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 194 (357)
.|++++|.....+|..+..+++|++|++++
T Consensus 264 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 293 (968)
T PLN00113 264 YLFLYQNKLSGPIPPSIFSLQKLISLDLSD 293 (968)
T ss_pred EEECcCCeeeccCchhHhhccCcCEEECcC
Confidence 555544443334444444444444444444
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=2.4e-22 Score=182.88 Aligned_cols=277 Identities=18% Similarity=0.245 Sum_probs=158.4
Q ss_pred ccccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCC-CCCCcccceecc------------
Q 043298 19 PSSLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKY-ELPATLESLEVG------------ 85 (357)
Q Consensus 19 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~-~~~~~L~~L~l~------------ 85 (357)
++.-+.|+++++. +.++... .|..+. +|+++++.+ +.++.+ |.. ....+|++|++.
T Consensus 77 p~~t~~LdlsnNk-l~~id~~------~f~nl~--nLq~v~l~~-N~Lt~I-P~f~~~sghl~~L~L~~N~I~sv~se~L 145 (873)
T KOG4194|consen 77 PSQTQTLDLSNNK-LSHIDFE------FFYNLP--NLQEVNLNK-NELTRI-PRFGHESGHLEKLDLRHNLISSVTSEEL 145 (873)
T ss_pred ccceeeeeccccc-cccCcHH------HHhcCC--cceeeeecc-chhhhc-ccccccccceeEEeeeccccccccHHHH
Confidence 4555667776665 6665555 455555 677777766 566666 665 333345555554
Q ss_pred ----------------------cCCCc--ceEEEecCCCCchhchhcc-CCCCcccEEEcccccCccccCc-cccCcccc
Q 043298 86 ----------------------NLPSS--VKVLDVYGCPKLESIAERL-DNNTSLETISIYNCENLKILPS-GLHKLHQL 139 (357)
Q Consensus 86 ----------------------~l~~~--L~~L~l~~c~~~~~~~~~~-~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L 139 (357)
.+|.. +++|++++ +.|+.+.... ....+|..|.++. ++++.+|. .|.++++|
T Consensus 146 ~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~-N~It~l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk~L~~L 223 (873)
T KOG4194|consen 146 SALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLAS-NRITTLETGHFDSLNSLLTLKLSR-NRITTLPQRSFKRLPKL 223 (873)
T ss_pred HhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecc-ccccccccccccccchheeeeccc-CcccccCHHHhhhcchh
Confidence 22211 66666666 5555544332 1233566666666 66666653 34557777
Q ss_pred ceeecccCCCcccc------------------------CC-CCcCcccccEEEeecCCCcccccccccCCCCCceEEecC
Q 043298 140 REIWIRECGNLVSF------------------------PE-GGLPCAKLRRLGIYDCERLEALPKGLHNLSSLQELTIGG 194 (357)
Q Consensus 140 ~~L~l~~~~~l~~~------------------------~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 194 (357)
+.|++..+ .++.. -. .++.+.++++|++..|+....-..++.++++|+.|++++
T Consensus 224 ~~LdLnrN-~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~ 302 (873)
T KOG4194|consen 224 ESLDLNRN-RIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSY 302 (873)
T ss_pred hhhhcccc-ceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccch
Confidence 77777553 33222 21 233455666666666433222234566777777777777
Q ss_pred -ccCCccC--CCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeecCCCCCCcCccccccccCCCCCCCCccEE
Q 043298 195 -ELPSLEE--DGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDMVSFPLEDKRLGTALPLPASLTSL 271 (357)
Q Consensus 195 -~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L 271 (357)
.+..+.. ..++++|++|+++. ++++..++. .+..+..|++|++++ +.+..+.+.. +..+++|++|
T Consensus 303 NaI~rih~d~WsftqkL~~LdLs~-N~i~~l~~~---sf~~L~~Le~LnLs~--Nsi~~l~e~a------f~~lssL~~L 370 (873)
T KOG4194|consen 303 NAIQRIHIDSWSFTQKLKELDLSS-NRITRLDEG---SFRVLSQLEELNLSH--NSIDHLAEGA------FVGLSSLHKL 370 (873)
T ss_pred hhhheeecchhhhcccceeEeccc-cccccCChh---HHHHHHHhhhhcccc--cchHHHHhhH------HHHhhhhhhh
Confidence 5554432 45567788888777 566666654 456666777777776 5555544332 3455677777
Q ss_pred EcCccccCc----ccccccccccccCeeccccCCCCcccCCCCC--ccCCceEEecCC
Q 043298 272 WIEDFPNLE----HLSSSIVDLQNLTSLGLYNCPKLKYFPEKGL--PSSLLLLWIEGC 323 (357)
Q Consensus 272 ~l~~c~~l~----~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~c 323 (357)
|++++ .+. +-...|.++++|+.|.+.+ ++++.++-..+ ++.|++|++.+.
T Consensus 371 dLr~N-~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 371 DLRSN-ELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDN 426 (873)
T ss_pred cCcCC-eEEEEEecchhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCC
Confidence 77663 222 2223345667777777776 56666665433 466777777664
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.83 E-value=1.6e-21 Score=177.57 Aligned_cols=276 Identities=15% Similarity=0.178 Sum_probs=159.0
Q ss_pred cccc-ceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCC-CCCCcccceecc-----------
Q 043298 19 PSSL-KNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKY-ELPATLESLEVG----------- 85 (357)
Q Consensus 19 ~~~L-~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~-~~~~~L~~L~l~----------- 85 (357)
++.. .-|+.++.. ++.+... ....+-++.-+.|++++ +.+..+-+.. ..+++|+++++.
T Consensus 50 c~c~~~lldcs~~~-lea~~~~------~l~g~lp~~t~~Ldlsn-Nkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~ 121 (873)
T KOG4194|consen 50 CPCNTRLLDCSDRE-LEAIDKS------RLKGFLPSQTQTLDLSN-NKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFG 121 (873)
T ss_pred CCCCceeeecCccc-ccccccc------ccCCcCccceeeeeccc-cccccCcHHHHhcCCcceeeeeccchhhhccccc
Confidence 4444 445555543 6654332 22333345677899998 6777762332 678899999888
Q ss_pred -cCCCcceEEEecCCCCchhchhcc-C----------------------CC--CcccEEEcccccCccccC-ccccCccc
Q 043298 86 -NLPSSVKVLDVYGCPKLESIAERL-D----------------------NN--TSLETISIYNCENLKILP-SGLHKLHQ 138 (357)
Q Consensus 86 -~l~~~L~~L~l~~c~~~~~~~~~~-~----------------------~~--~~L~~L~l~~c~~l~~l~-~~~~~l~~ 138 (357)
.... |+.|++.. +.|+++.... . +| .++++|++++ +.|+.+. ..|.++.+
T Consensus 122 ~~sgh-l~~L~L~~-N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~-N~It~l~~~~F~~lns 198 (873)
T KOG4194|consen 122 HESGH-LEKLDLRH-NLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLAS-NRITTLETGHFDSLNS 198 (873)
T ss_pred ccccc-eeEEeeec-cccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecc-ccccccccccccccch
Confidence 2223 67777776 5555432221 1 22 2356666665 5555543 23445566
Q ss_pred cceeecccCCCccccCC-CCcCcccccEEEeecCCCcccc-cccccCCCCCceEEecC-ccCCccCC--CCCCccceEEe
Q 043298 139 LREIWIRECGNLVSFPE-GGLPCAKLRRLGIYDCERLEAL-PKGLHNLSSLQELTIGG-ELPSLEED--GLPTNLHSLDI 213 (357)
Q Consensus 139 L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~-~~~~~~~~--~~~~~L~~L~l 213 (357)
|..|.+++ +.++.+|. .+.+++.|+.|++..|. ++.+ ...|..+++|+.|.+.. ++..+.+. ..+.++++|++
T Consensus 199 L~tlkLsr-NrittLp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L 276 (873)
T KOG4194|consen 199 LLTLKLSR-NRITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNL 276 (873)
T ss_pred heeeeccc-CcccccCHHHhhhcchhhhhhccccc-eeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeec
Confidence 66666666 45566664 34447777777776633 3333 23566677777777766 55555542 33677778887
Q ss_pred cCCcchhhhhhhcccccCCCCCcceEEeecCCCCCCcCc-cccccccCCCCCCCCccEEEcCccccCccccc-ccccccc
Q 043298 214 WGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDMVSFP-LEDKRLGTALPLPASLTSLWIEDFPNLEHLSS-SIVDLQN 291 (357)
Q Consensus 214 ~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~-~~~~~~~ 291 (357)
.. ++++.+... ++.++++|+.|++++ +.+..+. +.| ...++|+.|+++. +.+..++. ++..+..
T Consensus 277 ~~-N~l~~vn~g---~lfgLt~L~~L~lS~--NaI~rih~d~W-------sftqkL~~LdLs~-N~i~~l~~~sf~~L~~ 342 (873)
T KOG4194|consen 277 ET-NRLQAVNEG---WLFGLTSLEQLDLSY--NAIQRIHIDSW-------SFTQKLKELDLSS-NRITRLDEGSFRVLSQ 342 (873)
T ss_pred cc-chhhhhhcc---cccccchhhhhccch--hhhheeecchh-------hhcccceeEeccc-cccccCChhHHHHHHH
Confidence 77 555555543 456777777777777 4444443 233 4667777777777 56666643 3455566
Q ss_pred cCeeccccCCCCcccCCCCC--ccCCceEEecC
Q 043298 292 LTSLGLYNCPKLKYFPEKGL--PSSLLLLWIEG 322 (357)
Q Consensus 292 L~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~ 322 (357)
|++|.+.+ ++++.+....+ +++|++|++++
T Consensus 343 Le~LnLs~-Nsi~~l~e~af~~lssL~~LdLr~ 374 (873)
T KOG4194|consen 343 LEELNLSH-NSIDHLAEGAFVGLSSLHKLDLRS 374 (873)
T ss_pred hhhhcccc-cchHHHHhhHHHHhhhhhhhcCcC
Confidence 66666665 45555444322 45555555544
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.73 E-value=5.5e-20 Score=169.08 Aligned_cols=221 Identities=19% Similarity=0.253 Sum_probs=169.9
Q ss_pred ceEEEecCCCCchhchhccCCCCcccEEEcccccCcccc-CccccCccccceeecccCC-CccccCCCCcCcccccEEEe
Q 043298 91 VKVLDVYGCPKLESIAERLDNNTSLETISIYNCENLKIL-PSGLHKLHQLREIWIRECG-NLVSFPEGGLPCAKLRRLGI 168 (357)
Q Consensus 91 L~~L~l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~~~-~l~~~~~~~~~l~~L~~L~l 168 (357)
|-.|+++. +++..+|+....+..|+.|.+++ +.+... -..+..+++|+.|.+++.. -+..+|..+..+.||+.+++
T Consensus 152 LLfLDLS~-NrLe~LPPQ~RRL~~LqtL~Ls~-NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDl 229 (1255)
T KOG0444|consen 152 LLFLDLSN-NRLEMLPPQIRRLSMLQTLKLSN-NPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDL 229 (1255)
T ss_pred Hhhhcccc-chhhhcCHHHHHHhhhhhhhcCC-ChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccc
Confidence 77888887 77888887776666688888877 433321 1223346677777776654 33567877878889999999
Q ss_pred ecCCCcccccccccCCCCCceEEecC-ccCCccC-CCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeecCCC
Q 043298 169 YDCERLEALPKGLHNLSSLQELTIGG-ELPSLEE-DGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDD 246 (357)
Q Consensus 169 ~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~ 246 (357)
+. +.+..+|+.+..+++|+.|++++ .++.+.. .+.-.+|+.|+++. ++++..| ..+.+++.|+.|.+.++--
T Consensus 230 S~-N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSr-NQLt~LP----~avcKL~kL~kLy~n~NkL 303 (1255)
T KOG0444|consen 230 SE-NNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSR-NQLTVLP----DAVCKLTKLTKLYANNNKL 303 (1255)
T ss_pred cc-cCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhcccc-chhccch----HHHhhhHHHHHHHhccCcc
Confidence 86 66778888999999999999988 6665533 22236899999999 6788887 3578999999999987334
Q ss_pred CCCcCccccccccCCCCCCCCccEEEcCccccCcccccccccccccCeeccccCCCCcccCCC-CCccCCceEEecCChh
Q 043298 247 DMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLEHLSSSIVDLQNLTSLGLYNCPKLKYFPEK-GLPSSLLLLWIEGCPL 325 (357)
Q Consensus 247 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~~ 325 (357)
.++.+|.++| .+.+|+.+...+ +.+.-+|.++..|+.|+.|.+.+ +++-++|.. .+++.|+.||+++.|+
T Consensus 304 ~FeGiPSGIG-------KL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 304 TFEGIPSGIG-------KLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred cccCCccchh-------hhhhhHHHHhhc-cccccCchhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcC
Confidence 5778888774 778899998888 78999999999999999999986 778888884 4589999999999998
Q ss_pred hHH
Q 043298 326 IEE 328 (357)
Q Consensus 326 l~~ 328 (357)
|.-
T Consensus 375 LVM 377 (1255)
T KOG0444|consen 375 LVM 377 (1255)
T ss_pred ccC
Confidence 864
No 8
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.68 E-value=6.2e-16 Score=151.32 Aligned_cols=240 Identities=29% Similarity=0.398 Sum_probs=117.6
Q ss_pred ceeccCCccccccccccccccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCCCCCCcccc
Q 043298 2 LSIKHCRSLTYIAAVQLPSSLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKYELPATLES 81 (357)
Q Consensus 2 l~~~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~ 81 (357)
|++.++ +++.+|. .+.++|+.|++.++. ++.+|.. .+ +|++|++++ +.++.+ |. .+.+|+.
T Consensus 206 LdLs~~-~LtsLP~-~l~~~L~~L~L~~N~-Lt~LP~l----------p~--~Lk~LdLs~-N~LtsL-P~--lp~sL~~ 266 (788)
T PRK15387 206 LNVGES-GLTTLPD-CLPAHITTLVIPDNN-LTSLPAL----------PP--ELRTLEVSG-NQLTSL-PV--LPPGLLE 266 (788)
T ss_pred EEcCCC-CCCcCCc-chhcCCCEEEccCCc-CCCCCCC----------CC--CCcEEEecC-CccCcc-cC--cccccce
Confidence 444444 6666665 456788999998875 7877753 23 889999988 578777 64 2345555
Q ss_pred eecc--------cCCCcceEEEecCCCCchhchhccCCCCcccEEEcccccCccccCccccCccccceeecccCCCcccc
Q 043298 82 LEVG--------NLPSSVKVLDVYGCPKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSF 153 (357)
Q Consensus 82 L~l~--------~l~~~L~~L~l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~ 153 (357)
|++. .++..|+.|++++ +.++.+|. .+.+|+.|++++ +.++.+|.. ..+|+.|++++ +.+..+
T Consensus 267 L~Ls~N~L~~Lp~lp~~L~~L~Ls~-N~Lt~LP~---~p~~L~~LdLS~-N~L~~Lp~l---p~~L~~L~Ls~-N~L~~L 337 (788)
T PRK15387 267 LSIFSNPLTHLPALPSGLCKLWIFG-NQLTSLPV---LPPGLQELSVSD-NQLASLPAL---PSELCKLWAYN-NQLTSL 337 (788)
T ss_pred eeccCCchhhhhhchhhcCEEECcC-Cccccccc---cccccceeECCC-CccccCCCC---ccccccccccc-Cccccc
Confidence 4444 1111144555554 34444443 123355555554 344444321 12344444444 233334
Q ss_pred CCCCcCcccccEEEeecCCCcccccccccCCCCCceEEecC-ccCCccCCCCCCccceEEecCCcchhhhhhhcccccCC
Q 043298 154 PEGGLPCAKLRRLGIYDCERLEALPKGLHNLSSLQELTIGG-ELPSLEEDGLPTNLHSLDIWGNMEIWKSMIERGRGFHR 232 (357)
Q Consensus 154 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~ 232 (357)
|.. ..+|+.|++++ +.+..+|.. .++|+.|++.+ .+..+|.. +.+|+.|++++| .+..++. .
T Consensus 338 P~l---p~~Lq~LdLS~-N~Ls~LP~l---p~~L~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N-~Lt~LP~-------l 400 (788)
T PRK15387 338 PTL---PSGLQELSVSD-NQLASLPTL---PSELYKLWAYNNRLTSLPAL--PSGLKELIVSGN-RLTSLPV-------L 400 (788)
T ss_pred ccc---ccccceEecCC-CccCCCCCC---CcccceehhhccccccCccc--ccccceEEecCC-cccCCCC-------c
Confidence 321 12455555554 223334332 12344444444 44444321 234555555552 3333331 1
Q ss_pred CCCcceEEeecCCCCCCcCccccccccCCCCCCCCccEEEcCccccCcccccccccccccCeecccc
Q 043298 233 FSSLGHLKIGGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLEHLSSSIVDLQNLTSLGLYN 299 (357)
Q Consensus 233 ~~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~ 299 (357)
.++|+.|++++ +.+..+|. .+.+|+.|++++ +.++.+|..+..+++|+.+++.+
T Consensus 401 ~s~L~~LdLS~--N~LssIP~----------l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~ 454 (788)
T PRK15387 401 PSELKELMVSG--NRLTSLPM----------LPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEG 454 (788)
T ss_pred ccCCCEEEccC--CcCCCCCc----------chhhhhhhhhcc-CcccccChHHhhccCCCeEECCC
Confidence 23455555555 33444442 123455555555 34555555555555555555555
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.66 E-value=5.4e-19 Score=154.68 Aligned_cols=248 Identities=23% Similarity=0.276 Sum_probs=199.3
Q ss_pred ccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCC-CCCCcccceecc------------cC
Q 043298 21 SLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKY-ELPATLESLEVG------------NL 87 (357)
Q Consensus 21 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~-~~~~~L~~L~l~------------~l 87 (357)
.+..|.++++. ++.+... ...+. .+.+|.+.. +.+... |+. +.+..+++++.+ ..
T Consensus 46 ~l~~lils~N~-l~~l~~d-------l~nL~--~l~vl~~~~-n~l~~l-p~aig~l~~l~~l~vs~n~ls~lp~~i~s~ 113 (565)
T KOG0472|consen 46 DLQKLILSHND-LEVLRED-------LKNLA--CLTVLNVHD-NKLSQL-PAAIGELEALKSLNVSHNKLSELPEQIGSL 113 (565)
T ss_pred chhhhhhccCc-hhhccHh-------hhccc--ceeEEEecc-chhhhC-CHHHHHHHHHHHhhcccchHhhccHHHhhh
Confidence 45666666665 4444433 24444 666777766 455555 544 555555555555 45
Q ss_pred CCcceEEEecCCCCchhchhccCCCCcccEEEcccccCccccCccccCccccceeecccCCCccccCCCCcCcccccEEE
Q 043298 88 PSSVKVLDVYGCPKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSFPEGGLPCAKLRRLG 167 (357)
Q Consensus 88 ~~~L~~L~l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~ 167 (357)
++ |..++.++ +.++++++.++.+..++.++-.+ +++.++|+++..+.++..+++.+ +.+++.|+..-.++.|++|+
T Consensus 114 ~~-l~~l~~s~-n~~~el~~~i~~~~~l~dl~~~~-N~i~slp~~~~~~~~l~~l~~~~-n~l~~l~~~~i~m~~L~~ld 189 (565)
T KOG0472|consen 114 IS-LVKLDCSS-NELKELPDSIGRLLDLEDLDATN-NQISSLPEDMVNLSKLSKLDLEG-NKLKALPENHIAMKRLKHLD 189 (565)
T ss_pred hh-hhhhhccc-cceeecCchHHHHhhhhhhhccc-cccccCchHHHHHHHHHHhhccc-cchhhCCHHHHHHHHHHhcc
Confidence 55 88888888 78888888776677788888877 88999999999999999999988 67788887665688999999
Q ss_pred eecCCCcccccccccCCCCCceEEecC-ccCCccCCCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeecCCC
Q 043298 168 IYDCERLEALPKGLHNLSSLQELTIGG-ELPSLEEDGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDD 246 (357)
Q Consensus 168 l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~ 246 (357)
... +.++.+|..++.+.+|+-|++.. .+..+|+++.++.|.+|++.. ++++.++.+ ..++++++..||+++ +
T Consensus 190 ~~~-N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~-N~i~~lpae---~~~~L~~l~vLDLRd--N 262 (565)
T KOG0472|consen 190 CNS-NLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGE-NQIEMLPAE---HLKHLNSLLVLDLRD--N 262 (565)
T ss_pred cch-hhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcc-cHHHhhHHH---Hhcccccceeeeccc--c
Confidence 766 66889999999999999999999 999999999999999999988 778888875 678999999999999 8
Q ss_pred CCCcCccccccccCCCCCCCCccEEEcCccccCcccccccccccccCeeccccC
Q 043298 247 DMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLEHLSSSIVDLQNLTSLGLYNC 300 (357)
Q Consensus 247 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c 300 (357)
.++++|++. +.+.+|+.||+++ +.+..+|.++.++ +|+.|.+.+.
T Consensus 263 klke~Pde~-------clLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~leGN 307 (565)
T KOG0472|consen 263 KLKEVPDEI-------CLLRSLERLDLSN-NDISSLPYSLGNL-HLKFLALEGN 307 (565)
T ss_pred ccccCchHH-------HHhhhhhhhcccC-CccccCCcccccc-eeeehhhcCC
Confidence 999999998 6889999999999 7899999888888 8888877774
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.66 E-value=8.1e-19 Score=161.45 Aligned_cols=255 Identities=18% Similarity=0.224 Sum_probs=195.3
Q ss_pred ccccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCCCCCCcccceecc-------------
Q 043298 19 PSSLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKYELPATLESLEVG------------- 85 (357)
Q Consensus 19 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~------------- 85 (357)
+.+++.|.+.... +..+|.+. .++. +|++|.+.. +++..++.....++.|+.+.+.
T Consensus 31 Mt~~~WLkLnrt~-L~~vPeEL-------~~lq--kLEHLs~~H-N~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~di 99 (1255)
T KOG0444|consen 31 MTQMTWLKLNRTK-LEQVPEEL-------SRLQ--KLEHLSMAH-NQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDI 99 (1255)
T ss_pred hhheeEEEechhh-hhhChHHH-------HHHh--hhhhhhhhh-hhhHhhhhhhccchhhHHHhhhccccccCCCCchh
Confidence 6778888887654 77788762 5555 678888877 5666663333666677766555
Q ss_pred -cCCCcceEEEecCCCCchhchhccCCCCcccEEEcccccCccccCccc-cCccccceeecccCCCccccCCCCcCcccc
Q 043298 86 -NLPSSVKVLDVYGCPKLESIAERLDNNTSLETISIYNCENLKILPSGL-HKLHQLREIWIRECGNLVSFPEGGLPCAKL 163 (357)
Q Consensus 86 -~l~~~L~~L~l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L 163 (357)
.+.. |..|+++. +.+++.|.......++-.|++++ ++|+++|..+ -+++.|-.|++++ +.++.+|+...++.+|
T Consensus 100 F~l~d-Lt~lDLSh-NqL~EvP~~LE~AKn~iVLNLS~-N~IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ~RRL~~L 175 (1255)
T KOG0444|consen 100 FRLKD-LTILDLSH-NQLREVPTNLEYAKNSIVLNLSY-NNIETIPNSLFINLTDLLFLDLSN-NRLEMLPPQIRRLSML 175 (1255)
T ss_pred ccccc-ceeeecch-hhhhhcchhhhhhcCcEEEEccc-CccccCCchHHHhhHhHhhhcccc-chhhhcCHHHHHHhhh
Confidence 5556 99999999 89999999887788899999999 8999998765 5788999999998 6889999989999999
Q ss_pred cEEEeecCCCcccccccccCCCCCceEEecC---ccCCccC-CCCCCccceEEecCCcchhhhhhhcccccCCCCCcceE
Q 043298 164 RRLGIYDCERLEALPKGLHNLSSLQELTIGG---ELPSLEE-DGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHL 239 (357)
Q Consensus 164 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~---~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L 239 (357)
+.|.+++|+.....-..+..+++|+.|.+++ ....+|. ...+.+|..++++. +.+..+|. ++..+++|..|
T Consensus 176 qtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPe----cly~l~~LrrL 250 (1255)
T KOG0444|consen 176 QTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPE----CLYKLRNLRRL 250 (1255)
T ss_pred hhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcchH----HHhhhhhhhee
Confidence 9999998765433333445677888888887 4555655 45578899999998 66776773 67888999999
Q ss_pred EeecCCCCCCcCccccccccCCCCCCCCccEEEcCccccCcccccccccccccCeeccccCCCCc
Q 043298 240 KIGGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLEHLSSSIVDLQNLTSLGLYNCPKLK 304 (357)
Q Consensus 240 ~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~ 304 (357)
++++ +.++++.... ....+|++|+++. ++++.+|..+..+++|+.|.+.+ +++.
T Consensus 251 NLS~--N~iteL~~~~-------~~W~~lEtLNlSr-NQLt~LP~avcKL~kL~kLy~n~-NkL~ 304 (1255)
T KOG0444|consen 251 NLSG--NKITELNMTE-------GEWENLETLNLSR-NQLTVLPDAVCKLTKLTKLYANN-NKLT 304 (1255)
T ss_pred ccCc--CceeeeeccH-------HHHhhhhhhcccc-chhccchHHHhhhHHHHHHHhcc-Cccc
Confidence 9999 7777766544 2457889999998 78888888888888888887776 4553
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.65 E-value=4.8e-18 Score=162.51 Aligned_cols=202 Identities=24% Similarity=0.289 Sum_probs=119.5
Q ss_pred CCCcccEEEcccccCccccCccccCccccceeecccCCCccccCCCCcCcccccEEEeecCCCcccccccccCCCCCceE
Q 043298 111 NNTSLETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSFPEGGLPCAKLRRLGIYDCERLEALPKGLHNLSSLQEL 190 (357)
Q Consensus 111 ~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 190 (357)
.|.+|+.++++. +.+..+|.+++.+.+|+.+.+.. +.+.++|......++|+.|.+.. +.+..+|.....+++|++|
T Consensus 239 ~p~nl~~~dis~-n~l~~lp~wi~~~~nle~l~~n~-N~l~~lp~ri~~~~~L~~l~~~~-nel~yip~~le~~~sL~tL 315 (1081)
T KOG0618|consen 239 VPLNLQYLDISH-NNLSNLPEWIGACANLEALNANH-NRLVALPLRISRITSLVSLSAAY-NELEYIPPFLEGLKSLRTL 315 (1081)
T ss_pred ccccceeeecch-hhhhcchHHHHhcccceEecccc-hhHHhhHHHHhhhhhHHHHHhhh-hhhhhCCCcccccceeeee
Confidence 345566666666 66666676667777777777766 34455555555555555555554 3345555555556666666
Q ss_pred EecC-ccCCccC---------------------------CCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEee
Q 043298 191 TIGG-ELPSLEE---------------------------DGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIG 242 (357)
Q Consensus 191 ~l~~-~~~~~~~---------------------------~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~ 242 (357)
++.. .+..+|. ....+.|+.|.+.+|.--....+ .+.++++|+.|+++
T Consensus 316 dL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p----~l~~~~hLKVLhLs 391 (1081)
T KOG0618|consen 316 DLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFP----VLVNFKHLKVLHLS 391 (1081)
T ss_pred eehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchh----hhccccceeeeeec
Confidence 6655 3333322 11123455555555333223332 35677777888887
Q ss_pred cCCCCCCcCccccccccCCCCCCCCccEEEcCccccCcccccccccccccCeeccccCCCCcccCCCCCccCCceEEecC
Q 043298 243 GCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLEHLSSSIVDLQNLTSLGLYNCPKLKYFPEKGLPSSLLLLWIEG 322 (357)
Q Consensus 243 ~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~ 322 (357)
+ +++.+||+.. +..+..|++|+++| +.++.+|..+..++.|++|...+ +.+..+|....+++|+.+|++
T Consensus 392 y--NrL~~fpas~------~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahs-N~l~~fPe~~~l~qL~~lDlS- 460 (1081)
T KOG0618|consen 392 Y--NRLNSFPASK------LRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHS-NQLLSFPELAQLPQLKVLDLS- 460 (1081)
T ss_pred c--cccccCCHHH------HhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcC-CceeechhhhhcCcceEEecc-
Confidence 7 6777777654 24566777777777 67777776666666666666555 456666654445666666664
Q ss_pred ChhhHHHh
Q 043298 323 CPLIEEKC 330 (357)
Q Consensus 323 c~~l~~~~ 330 (357)
|..|+++.
T Consensus 461 ~N~L~~~~ 468 (1081)
T KOG0618|consen 461 CNNLSEVT 468 (1081)
T ss_pred cchhhhhh
Confidence 45555543
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.58 E-value=2.8e-17 Score=144.05 Aligned_cols=139 Identities=20% Similarity=0.176 Sum_probs=68.0
Q ss_pred cCccccCccccCccccceeecccCCCccccCCCCcCcccccEEEeecCCCcccccccccCCCCCceEEecC-ccCCccCC
Q 043298 124 ENLKILPSGLHKLHQLREIWIRECGNLVSFPEGGLPCAKLRRLGIYDCERLEALPKGLHNLSSLQELTIGG-ELPSLEED 202 (357)
Q Consensus 124 ~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~ 202 (357)
+++.++|..+..+..+.+.-+..++.+..+|..+..+++|..|++++ +.+..+|..++.+..|+.++++. .+..+|..
T Consensus 398 NqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~N-N~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~ 476 (565)
T KOG0472|consen 398 NQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSN-NLLNDLPEEMGSLVRLQTLNLSFNRFRMLPEC 476 (565)
T ss_pred chHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeeccc-chhhhcchhhhhhhhhheecccccccccchHH
Confidence 34444444443344333333333234444444455556666666654 44555666565555566666655 55555543
Q ss_pred CCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeecCCCCCCcCccccccccCCCCCCCCccEEEcCc
Q 043298 203 GLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDMVSFPLEDKRLGTALPLPASLTSLWIED 275 (357)
Q Consensus 203 ~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 275 (357)
.......+..++..+++..+++. .+++|.+|..|++.+ +.+..+|... ..+.+|++|+++|
T Consensus 477 ~y~lq~lEtllas~nqi~~vd~~---~l~nm~nL~tLDL~n--Ndlq~IPp~L-------gnmtnL~hLeL~g 537 (565)
T KOG0472|consen 477 LYELQTLETLLASNNQIGSVDPS---GLKNMRNLTTLDLQN--NDLQQIPPIL-------GNMTNLRHLELDG 537 (565)
T ss_pred HhhHHHHHHHHhccccccccChH---HhhhhhhcceeccCC--CchhhCChhh-------ccccceeEEEecC
Confidence 33222222233333445544443 345555555555555 4555555554 2555555555555
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.58 E-value=1.3e-14 Score=142.19 Aligned_cols=213 Identities=29% Similarity=0.347 Sum_probs=114.3
Q ss_pred ccccccccccccccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCCCCCCcccceecc---
Q 043298 9 SLTYIAAVQLPSSLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKYELPATLESLEVG--- 85 (357)
Q Consensus 9 ~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~--- 85 (357)
+++.+|. .+++|++|++++|. ++.+|.. .. +|+.|++.++ .++.+ |. .+.+|+.|+++
T Consensus 233 ~Lt~LP~--lp~~Lk~LdLs~N~-LtsLP~l----------p~--sL~~L~Ls~N-~L~~L-p~--lp~~L~~L~Ls~N~ 293 (788)
T PRK15387 233 NLTSLPA--LPPELRTLEVSGNQ-LTSLPVL----------PP--GLLELSIFSN-PLTHL-PA--LPSGLCKLWIFGNQ 293 (788)
T ss_pred cCCCCCC--CCCCCcEEEecCCc-cCcccCc----------cc--ccceeeccCC-chhhh-hh--chhhcCEEECcCCc
Confidence 3444443 35666667766654 6665532 12 5666666663 45554 43 23455555544
Q ss_pred ------cCCCcceEEEecCCCCchhchhccCCCCcccEEEcccccCccccCccccCccccceeecccCCCccccCCCCcC
Q 043298 86 ------NLPSSVKVLDVYGCPKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSFPEGGLP 159 (357)
Q Consensus 86 ------~l~~~L~~L~l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 159 (357)
..++ |++|++++ +.++.+|. .+.+|+.|.+++ +.++.+|.. ..+|+.|++++ +.++.+|..
T Consensus 294 Lt~LP~~p~~-L~~LdLS~-N~L~~Lp~---lp~~L~~L~Ls~-N~L~~LP~l---p~~Lq~LdLS~-N~Ls~LP~l--- 360 (788)
T PRK15387 294 LTSLPVLPPG-LQELSVSD-NQLASLPA---LPSELCKLWAYN-NQLTSLPTL---PSGLQELSVSD-NQLASLPTL--- 360 (788)
T ss_pred cccccccccc-cceeECCC-CccccCCC---Cccccccccccc-Ccccccccc---ccccceEecCC-CccCCCCCC---
Confidence 1234 66677766 45665554 234466666666 455555531 23566666666 345555542
Q ss_pred cccccEEEeecCCCcccccccccCCCCCceEEecC-ccCCccCCCCCCccceEEecCCcchhhhhhhcccccCCCCCcce
Q 043298 160 CAKLRRLGIYDCERLEALPKGLHNLSSLQELTIGG-ELPSLEEDGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGH 238 (357)
Q Consensus 160 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~ 238 (357)
.++|+.|++++| .+..+|.. .++|+.|++++ .++.+|.. +++|+.|++++| .++.++. ....|+.
T Consensus 361 p~~L~~L~Ls~N-~L~~LP~l---~~~L~~LdLs~N~Lt~LP~l--~s~L~~LdLS~N-~LssIP~-------l~~~L~~ 426 (788)
T PRK15387 361 PSELYKLWAYNN-RLTSLPAL---PSGLKELIVSGNRLTSLPVL--PSELKELMVSGN-RLTSLPM-------LPSGLLS 426 (788)
T ss_pred Ccccceehhhcc-ccccCccc---ccccceEEecCCcccCCCCc--ccCCCEEEccCC-cCCCCCc-------chhhhhh
Confidence 235666666653 34445432 23566666666 55555432 356666666663 3444431 1235566
Q ss_pred EEeecCCCCCCcCccccccccCCCCCCCCccEEEcCcc
Q 043298 239 LKIGGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDF 276 (357)
Q Consensus 239 L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c 276 (357)
|++++ +.+..+|..+ ..+++|+.|+++++
T Consensus 427 L~Ls~--NqLt~LP~sl-------~~L~~L~~LdLs~N 455 (788)
T PRK15387 427 LSVYR--NQLTRLPESL-------IHLSSETTVNLEGN 455 (788)
T ss_pred hhhcc--CcccccChHH-------hhccCCCeEECCCC
Confidence 66666 4556666544 35566666776664
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.51 E-value=3.1e-14 Score=140.17 Aligned_cols=243 Identities=21% Similarity=0.307 Sum_probs=122.6
Q ss_pred cccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCCCCCCcccceecccCCCcceEEEecCC
Q 043298 20 SSLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKYELPATLESLEVGNLPSSVKVLDVYGC 99 (357)
Q Consensus 20 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~l~~~L~~L~l~~c 99 (357)
.+.++|+++++. ++.+|.. + .. +|+.|++++ +.++.+ |... .++ |++|++++
T Consensus 178 ~~~~~L~L~~~~-LtsLP~~------I---p~--~L~~L~Ls~-N~LtsL-P~~l------------~~n-L~~L~Ls~- 229 (754)
T PRK15370 178 NNKTELRLKILG-LTTIPAC------I---PE--QITTLILDN-NELKSL-PENL------------QGN-IKTLYANS- 229 (754)
T ss_pred cCceEEEeCCCC-cCcCCcc------c---cc--CCcEEEecC-CCCCcC-Chhh------------ccC-CCEEECCC-
Confidence 345666666654 5666643 1 12 566666666 355555 4321 112 55666665
Q ss_pred CCchhchhccCCCCcccEEEcccccCccccCccccCccccceeecccCCCccccCCCCcCcccccEEEeecCCCcccccc
Q 043298 100 PKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSFPEGGLPCAKLRRLGIYDCERLEALPK 179 (357)
Q Consensus 100 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 179 (357)
+.++.+|... +.+|+.|++++ +.+..+|..+. .+|+.|++++ +.+..+|..+. ++|+.|++++| .++.+|.
T Consensus 230 N~LtsLP~~l--~~~L~~L~Ls~-N~L~~LP~~l~--s~L~~L~Ls~-N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~ 300 (754)
T PRK15370 230 NQLTSIPATL--PDTIQEMELSI-NRITELPERLP--SALQSLDLFH-NKISCLPENLP--EELRYLSVYDN-SIRTLPA 300 (754)
T ss_pred CccccCChhh--hccccEEECcC-CccCcCChhHh--CCCCEEECcC-CccCccccccC--CCCcEEECCCC-ccccCcc
Confidence 3455555433 33466666665 44555554432 3566666654 34455554332 35666666653 3444443
Q ss_pred cccCCCCCceEEecC-ccCCccCCCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeecCCCCCCcCccccccc
Q 043298 180 GLHNLSSLQELTIGG-ELPSLEEDGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDMVSFPLEDKRL 258 (357)
Q Consensus 180 ~~~~l~~L~~L~l~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~~~~~~~~~ 258 (357)
.+. ++|+.|++.+ .++.+|. ..+++|+.|++.+| .++.++.. + .++|+.|++++ +.+..+|..
T Consensus 301 ~lp--~sL~~L~Ls~N~Lt~LP~-~l~~sL~~L~Ls~N-~Lt~LP~~----l--~~sL~~L~Ls~--N~L~~LP~~---- 364 (754)
T PRK15370 301 HLP--SGITHLNVQSNSLTALPE-TLPPGLKTLEAGEN-ALTSLPAS----L--PPELQVLDVSK--NQITVLPET---- 364 (754)
T ss_pred cch--hhHHHHHhcCCccccCCc-cccccceeccccCC-ccccCChh----h--cCcccEEECCC--CCCCcCChh----
Confidence 332 3456666655 5554443 22356666666663 34433321 1 24666666666 344555442
Q ss_pred cCCCCCCCCccEEEcCccccCcccccccccccccCeeccccCCCCcccCCC-----CCccCCceEEecCCh
Q 043298 259 GTALPLPASLTSLWIEDFPNLEHLSSSIVDLQNLTSLGLYNCPKLKYFPEK-----GLPSSLLLLWIEGCP 324 (357)
Q Consensus 259 ~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~-----~~~~~L~~L~i~~c~ 324 (357)
.+++|+.|++++| .+..+|..+. ..|+.|++.+ ++++.+|.. +..+.+..|++.+.+
T Consensus 365 -----lp~~L~~LdLs~N-~Lt~LP~~l~--~sL~~LdLs~-N~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 365 -----LPPTITTLDVSRN-ALTNLPENLP--AALQIMQASR-NNLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred -----hcCCcCEEECCCC-cCCCCCHhHH--HHHHHHhhcc-CCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 2346666666663 4555554322 2466666666 345555441 112455666666554
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.50 E-value=1.2e-13 Score=136.12 Aligned_cols=238 Identities=23% Similarity=0.360 Sum_probs=174.5
Q ss_pred ceeccCCccccccccccccccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCCCCCCcccc
Q 043298 2 LSIKHCRSLTYIAAVQLPSSLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKYELPATLES 81 (357)
Q Consensus 2 l~~~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~ 81 (357)
|.+++. +++.+|. ..+++|+.|++++|. ++.+|.. ++ . +|++|++++ +.++.+ |.. .+
T Consensus 183 L~L~~~-~LtsLP~-~Ip~~L~~L~Ls~N~-LtsLP~~------l~---~--nL~~L~Ls~-N~LtsL-P~~-l~----- 240 (754)
T PRK15370 183 LRLKIL-GLTTIPA-CIPEQITTLILDNNE-LKSLPEN------LQ---G--NIKTLYANS-NQLTSI-PAT-LP----- 240 (754)
T ss_pred EEeCCC-CcCcCCc-ccccCCcEEEecCCC-CCcCChh------hc---c--CCCEEECCC-CccccC-Chh-hh-----
Confidence 344443 5566664 346789999999986 8888876 22 4 799999998 467777 642 11
Q ss_pred eecccCCCcceEEEecCCCCchhchhccCCCCcccEEEcccccCccccCccccCccccceeecccCCCccccCCCCcCcc
Q 043298 82 LEVGNLPSSVKVLDVYGCPKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSFPEGGLPCA 161 (357)
Q Consensus 82 L~l~~l~~~L~~L~l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~ 161 (357)
+. |+.|++++ +.++.+|... +.+|+.|++++ +.++.+|..+. ++|+.|++++| .++.+|..+. +
T Consensus 241 ------~~-L~~L~Ls~-N~L~~LP~~l--~s~L~~L~Ls~-N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~lp--~ 304 (754)
T PRK15370 241 ------DT-IQEMELSI-NRITELPERL--PSALQSLDLFH-NKISCLPENLP--EELRYLSVYDN-SIRTLPAHLP--S 304 (754)
T ss_pred ------cc-ccEEECcC-CccCcCChhH--hCCCCEEECcC-CccCccccccC--CCCcEEECCCC-ccccCcccch--h
Confidence 13 88999998 5677888765 56799999986 78888887653 58999999985 6777776443 4
Q ss_pred cccEEEeecCCCcccccccccCCCCCceEEecC-ccCCccCCCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEE
Q 043298 162 KLRRLGIYDCERLEALPKGLHNLSSLQELTIGG-ELPSLEEDGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLK 240 (357)
Q Consensus 162 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~ 240 (357)
+|+.|++++|. +..+|..+ .++|+.|++.+ .++.+|. ..+++|+.|++++| .++.++.. + .+.|+.|+
T Consensus 305 sL~~L~Ls~N~-Lt~LP~~l--~~sL~~L~Ls~N~Lt~LP~-~l~~sL~~L~Ls~N-~L~~LP~~----l--p~~L~~Ld 373 (754)
T PRK15370 305 GITHLNVQSNS-LTALPETL--PPGLKTLEAGENALTSLPA-SLPPELQVLDVSKN-QITVLPET----L--PPTITTLD 373 (754)
T ss_pred hHHHHHhcCCc-cccCCccc--cccceeccccCCccccCCh-hhcCcccEEECCCC-CCCcCChh----h--cCCcCEEE
Confidence 79999999854 55666544 36899999998 8877774 34589999999995 45655532 2 36899999
Q ss_pred eecCCCCCCcCccccccccCCCCCCCCccEEEcCccccCccccccccc----ccccCeeccccC
Q 043298 241 IGGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLEHLSSSIVD----LQNLTSLGLYNC 300 (357)
Q Consensus 241 l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~----~~~L~~L~l~~c 300 (357)
+++ +.+..+|... +.+|+.|++++ +.+..+|..+.. ++++..+++.+.
T Consensus 374 Ls~--N~Lt~LP~~l---------~~sL~~LdLs~-N~L~~LP~sl~~~~~~~~~l~~L~L~~N 425 (754)
T PRK15370 374 VSR--NALTNLPENL---------PAALQIMQASR-NNLVRLPESLPHFRGEGPQPTRIIVEYN 425 (754)
T ss_pred CCC--CcCCCCCHhH---------HHHHHHHhhcc-CCcccCchhHHHHhhcCCCccEEEeeCC
Confidence 999 4677887644 35799999999 578888765443 477888988874
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.47 E-value=3.1e-15 Score=143.54 Aligned_cols=218 Identities=20% Similarity=0.246 Sum_probs=158.4
Q ss_pred CCcceEEEecCCCCchhchhccCCCCcccEEEcccccCccccCccccCccccceeecccCCCccccCCCCcCcccccEEE
Q 043298 88 PSSVKVLDVYGCPKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSFPEGGLPCAKLRRLG 167 (357)
Q Consensus 88 ~~~L~~L~l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~ 167 (357)
|+.|++++++. +.+..+|..++.+.+|+.++... +++..+|..+...++|+.+.+.. +.++++|........|++|+
T Consensus 240 p~nl~~~dis~-n~l~~lp~wi~~~~nle~l~~n~-N~l~~lp~ri~~~~~L~~l~~~~-nel~yip~~le~~~sL~tLd 316 (1081)
T KOG0618|consen 240 PLNLQYLDISH-NNLSNLPEWIGACANLEALNANH-NRLVALPLRISRITSLVSLSAAY-NELEYIPPFLEGLKSLRTLD 316 (1081)
T ss_pred cccceeeecch-hhhhcchHHHHhcccceEecccc-hhHHhhHHHHhhhhhHHHHHhhh-hhhhhCCCcccccceeeeee
Confidence 33377777777 67777776666667777777777 66777776667777777777766 45677777666667777777
Q ss_pred eecCCCcccccccc--------------------------cCCCCCceEEecC---ccCCccCCCCCCccceEEecCCcc
Q 043298 168 IYDCERLEALPKGL--------------------------HNLSSLQELTIGG---ELPSLEEDGLPTNLHSLDIWGNME 218 (357)
Q Consensus 168 l~~~~~~~~~~~~~--------------------------~~l~~L~~L~l~~---~~~~~~~~~~~~~L~~L~l~~~~~ 218 (357)
+..|+ +..+|+.+ ..++.|+.|.+.+ ....+|.....++|+.|++++ ++
T Consensus 317 L~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy-Nr 394 (1081)
T KOG0618|consen 317 LQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY-NR 394 (1081)
T ss_pred ehhcc-ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecc-cc
Confidence 77643 33333211 1234456666666 334566666678999999999 67
Q ss_pred hhhhhhhcccccCCCCCcceEEeecCCCCCCcCccccccccCCCCCCCCccEEEcCccccCcccccccccccccCeeccc
Q 043298 219 IWKSMIERGRGFHRFSSLGHLKIGGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLEHLSSSIVDLQNLTSLGLY 298 (357)
Q Consensus 219 l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~ 298 (357)
+..++.. .+.++..|++|++++ +.+..+|... ..+.+|++|...+ +.+..+| .+..+++|+.+|++
T Consensus 395 L~~fpas---~~~kle~LeeL~LSG--NkL~~Lp~tv-------a~~~~L~tL~ahs-N~l~~fP-e~~~l~qL~~lDlS 460 (1081)
T KOG0618|consen 395 LNSFPAS---KLRKLEELEELNLSG--NKLTTLPDTV-------ANLGRLHTLRAHS-NQLLSFP-ELAQLPQLKVLDLS 460 (1081)
T ss_pred cccCCHH---HHhchHHhHHHhccc--chhhhhhHHH-------HhhhhhHHHhhcC-Cceeech-hhhhcCcceEEecc
Confidence 7777764 678899999999999 8899999777 5788999998888 7888888 67889999999998
Q ss_pred cCCCCcccCC-CCCc-cCCceEEecCChh
Q 043298 299 NCPKLKYFPE-KGLP-SSLLLLWIEGCPL 325 (357)
Q Consensus 299 ~c~~l~~l~~-~~~~-~~L~~L~i~~c~~ 325 (357)
. ++++.+-. ...+ ++|++||+++.+.
T Consensus 461 ~-N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 461 C-NNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred c-chhhhhhhhhhCCCcccceeeccCCcc
Confidence 5 78877433 2334 7999999999775
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.36 E-value=7.5e-15 Score=128.68 Aligned_cols=140 Identities=16% Similarity=0.218 Sum_probs=97.7
Q ss_pred ccccccccccccccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCCCCCCcccceecccCC
Q 043298 9 SLTYIAAVQLPSSLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKYELPATLESLEVGNLP 88 (357)
Q Consensus 9 ~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~l~ 88 (357)
+++++|. .+++.-.++.+..+. |+.+|.. +|+.++ +||.|+++. +.++.+ .+. .++.|..
T Consensus 57 GL~eVP~-~LP~~tveirLdqN~-I~~iP~~------aF~~l~--~LRrLdLS~-N~Is~I-~p~-AF~GL~~------- 116 (498)
T KOG4237|consen 57 GLTEVPA-NLPPETVEIRLDQNQ-ISSIPPG------AFKTLH--RLRRLDLSK-NNISFI-APD-AFKGLAS------- 116 (498)
T ss_pred CcccCcc-cCCCcceEEEeccCC-cccCChh------hccchh--hhceecccc-cchhhc-ChH-hhhhhHh-------
Confidence 5666664 567888999998887 9999998 889998 999999998 678777 333 2344444
Q ss_pred CcceEEEecCCCCchhchhcc-CCCCcccEEEcccccCccccC-ccccCccccceeecccCCCccccCC-CCcCcccccE
Q 043298 89 SSVKVLDVYGCPKLESIAERL-DNNTSLETISIYNCENLKILP-SGLHKLHQLREIWIRECGNLVSFPE-GGLPCAKLRR 165 (357)
Q Consensus 89 ~~L~~L~l~~c~~~~~~~~~~-~~~~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~ 165 (357)
|..|.+++.++|+++|... +.+..++.|.+.- +++.-++ ..+..++++..|.+.+ +.+..++. .+..+.+++.
T Consensus 117 --l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa-n~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~t 192 (498)
T KOG4237|consen 117 --LLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA-NHINCIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKT 192 (498)
T ss_pred --hhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh-hhhcchhHHHHHHhhhcchhcccc-hhhhhhccccccchhccch
Confidence 7788888778999998876 3344466666654 4444333 4456677777777777 45666665 4566667777
Q ss_pred EEeecCC
Q 043298 166 LGIYDCE 172 (357)
Q Consensus 166 L~l~~~~ 172 (357)
+.+.-+.
T Consensus 193 lhlA~np 199 (498)
T KOG4237|consen 193 LHLAQNP 199 (498)
T ss_pred HhhhcCc
Confidence 7666544
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.29 E-value=6.2e-14 Score=109.71 Aligned_cols=130 Identities=25% Similarity=0.302 Sum_probs=67.2
Q ss_pred ceEEEecCCCCchhchhccCCCCcccEEEcccccCccccCccccCccccceeecccCCCcc-ccCCCCcCcccccEEEee
Q 043298 91 VKVLDVYGCPKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREIWIRECGNLV-SFPEGGLPCAKLRRLGIY 169 (357)
Q Consensus 91 L~~L~l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~-~~~~~~~~l~~L~~L~l~ 169 (357)
|+.|++++ +.++++|..+..++.|+.|++.- +++..+|.+|+.++.|+.||+.+++.-+ .+|..++.++.|+.|+++
T Consensus 58 levln~~n-nqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~ 135 (264)
T KOG0617|consen 58 LEVLNLSN-NQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLG 135 (264)
T ss_pred hhhhhccc-chhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhc
Confidence 44455554 45555555543444455555543 5555555555555555555555543222 344444445555555555
Q ss_pred cCCCcccccccccCCCCCceEEecC-ccCCccC-CCCCCccceEEecCCcchhhhhh
Q 043298 170 DCERLEALPKGLHNLSSLQELTIGG-ELPSLEE-DGLPTNLHSLDIWGNMEIWKSMI 224 (357)
Q Consensus 170 ~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~ 224 (357)
+ +..+.+|..++.+++|+.|.+.. .+-++|. .+.+.+|++|++.+ +.++.+++
T Consensus 136 d-ndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqg-nrl~vlpp 190 (264)
T KOG0617|consen 136 D-NDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQG-NRLTVLPP 190 (264)
T ss_pred C-CCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhccc-ceeeecCh
Confidence 5 33455555555555555555555 3333333 34455556666655 44554443
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.25 E-value=2.2e-13 Score=106.63 Aligned_cols=159 Identities=23% Similarity=0.362 Sum_probs=84.3
Q ss_pred CCcccEEEcccccCccccCccccCccccceeecccCCCccccCCCCcCcccccEEEeecCCCcccccccccCCCCCceEE
Q 043298 112 NTSLETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSFPEGGLPCAKLRRLGIYDCERLEALPKGLHNLSSLQELT 191 (357)
Q Consensus 112 ~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 191 (357)
+...+.|.+++ +.+..+|..+..+.+|+.|.+.+ +.++++|..+..++.|++|++.- +.+..+|.+|+.++.|+.|+
T Consensus 32 ~s~ITrLtLSH-NKl~~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSH-NKLTVVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhccc-CceeecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhhh
Confidence 33445555555 55555555555566666666555 45555555555555666665554 33444555555555555555
Q ss_pred ecCccCCccCCCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeecCCCCCCcCccccccccCCCCCCCCccEE
Q 043298 192 IGGELPSLEEDGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDMVSFPLEDKRLGTALPLPASLTSL 271 (357)
Q Consensus 192 l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L 271 (357)
+.+ ++--+...+ ..|..++.|+.|++++ +.++.+|.+. ..+++|+.|
T Consensus 109 lty---------------------nnl~e~~lp---gnff~m~tlralyl~d--ndfe~lp~dv-------g~lt~lqil 155 (264)
T KOG0617|consen 109 LTY---------------------NNLNENSLP---GNFFYMTTLRALYLGD--NDFEILPPDV-------GKLTNLQIL 155 (264)
T ss_pred ccc---------------------cccccccCC---cchhHHHHHHHHHhcC--CCcccCChhh-------hhhcceeEE
Confidence 554 332222222 1344445555555555 4555555554 255556666
Q ss_pred EcCccccCcccccccccccccCeeccccCCCCcccCC
Q 043298 272 WIEDFPNLEHLSSSIVDLQNLTSLGLYNCPKLKYFPE 308 (357)
Q Consensus 272 ~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~ 308 (357)
.+.+ +.+-.+|..+..+.+|++|.+++ ++++.+|+
T Consensus 156 ~lrd-ndll~lpkeig~lt~lrelhiqg-nrl~vlpp 190 (264)
T KOG0617|consen 156 SLRD-NDLLSLPKEIGDLTRLRELHIQG-NRLTVLPP 190 (264)
T ss_pred eecc-CchhhCcHHHHHHHHHHHHhccc-ceeeecCh
Confidence 6665 45555555555556666666665 44544443
No 20
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.16 E-value=4.5e-13 Score=118.51 Aligned_cols=285 Identities=16% Similarity=0.215 Sum_probs=177.7
Q ss_pred ccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCCCCCCcccceecccCCCcceEEEecCCC
Q 043298 21 SLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKYELPATLESLEVGNLPSSVKVLDVYGCP 100 (357)
Q Consensus 21 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~l~~~L~~L~l~~c~ 100 (357)
-|++|.++||..+..-+.-. +....+ ++.+|.+.+|..+++. .+.++.+ .++. |+++++..|.
T Consensus 139 ~lk~LSlrG~r~v~~sslrt-----~~~~Cp--nIehL~l~gc~~iTd~-----s~~sla~----~C~~-l~~l~L~~c~ 201 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRT-----FASNCP--NIEHLALYGCKKITDS-----SLLSLAR----YCRK-LRHLNLHSCS 201 (483)
T ss_pred ccccccccccccCCcchhhH-----HhhhCC--chhhhhhhcceeccHH-----HHHHHHH----hcch-hhhhhhcccc
Confidence 46778888877554433221 344555 7777877777766654 1223322 6667 8888888888
Q ss_pred Cchhchhc--cCCCCcccEEEcccccCccc--cCccccCccccceeecccCCCcc--ccCCCCcCcccccEEEeecCCCc
Q 043298 101 KLESIAER--LDNNTSLETISIYNCENLKI--LPSGLHKLHQLREIWIRECGNLV--SFPEGGLPCAKLRRLGIYDCERL 174 (357)
Q Consensus 101 ~~~~~~~~--~~~~~~L~~L~l~~c~~l~~--l~~~~~~l~~L~~L~l~~~~~l~--~~~~~~~~l~~L~~L~l~~~~~~ 174 (357)
.+++..-. ...+++|+++++++|..++. +.....++..++.+...+|...+ .+......++-+-.+++..|..+
T Consensus 202 ~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~l 281 (483)
T KOG4341|consen 202 SITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQL 281 (483)
T ss_pred hhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccc
Confidence 77764332 12344588888888888764 33344566667777666765332 12111222345666666677766
Q ss_pred ccccc--cccCCCCCceEEecC--ccCCcc--C-CCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeecCCCC
Q 043298 175 EALPK--GLHNLSSLQELTIGG--ELPSLE--E-DGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDD 247 (357)
Q Consensus 175 ~~~~~--~~~~l~~L~~L~l~~--~~~~~~--~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~ 247 (357)
++... .-..+..|+.++.++ .++..+ . .....+|+.+.+.+|.++++.... ..-.+++.|+.+++.. |..
T Consensus 282 TD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft--~l~rn~~~Le~l~~e~-~~~ 358 (483)
T KOG4341|consen 282 TDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFT--MLGRNCPHLERLDLEE-CGL 358 (483)
T ss_pred cchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhh--hhhcCChhhhhhcccc-cce
Confidence 65421 123466788888777 332211 1 344689999999999888776644 2235678899999888 654
Q ss_pred CCcCccccccccCCCCCCCCccEEEcCccccCccc-----ccccccccccCeeccccCCCCcccCC--CCCccCCceEEe
Q 043298 248 MVSFPLEDKRLGTALPLPASLTSLWIEDFPNLEHL-----SSSIVDLQNLTSLGLYNCPKLKYFPE--KGLPSSLLLLWI 320 (357)
Q Consensus 248 l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i-----~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~~~~L~~L~i 320 (357)
...- ++......++.|+.+.+++|..+++- ..+-.++..+..+.+.+|+.++.-.. -...+.|+.+++
T Consensus 359 ~~d~-----tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l 433 (483)
T KOG4341|consen 359 ITDG-----TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIEL 433 (483)
T ss_pred ehhh-----hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeee
Confidence 3322 12233357788999999988766543 33335677888899999988765222 123578999999
Q ss_pred cCChhhHHHh
Q 043298 321 EGCPLIEEKC 330 (357)
Q Consensus 321 ~~c~~l~~~~ 330 (357)
.+|...+...
T Consensus 434 ~~~q~vtk~~ 443 (483)
T KOG4341|consen 434 IDCQDVTKEA 443 (483)
T ss_pred echhhhhhhh
Confidence 9998776543
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.06 E-value=5.5e-12 Score=110.95 Aligned_cols=218 Identities=17% Similarity=0.196 Sum_probs=135.8
Q ss_pred cccccccccc--ccccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCC--CCCCcccceec
Q 043298 9 SLTYIAAVQL--PSSLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKY--ELPATLESLEV 84 (357)
Q Consensus 9 ~l~~~~~~~~--~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~--~~~~~L~~L~l 84 (357)
.++.+|+.+| +++|++|+++++. |+.+... .|+++. ++-.|-+-+.+.++++ |+. ..+.+|+.|.+
T Consensus 78 ~I~~iP~~aF~~l~~LRrLdLS~N~-Is~I~p~------AF~GL~--~l~~Lvlyg~NkI~~l-~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 78 QISSIPPGAFKTLHRLRRLDLSKNN-ISFIAPD------AFKGLA--SLLSLVLYGNNKITDL-PKGAFGGLSSLQRLLL 147 (498)
T ss_pred CcccCChhhccchhhhceecccccc-hhhcChH------hhhhhH--hhhHHHhhcCCchhhh-hhhHhhhHHHHHHHhc
Confidence 6788888887 8999999999987 8887777 889999 9999999888999999 887 66778888777
Q ss_pred c-------------cCCCcceEEEecCCCCchhchhcc-CCCCcccEEEcccccCcc------------ccCccccCccc
Q 043298 85 G-------------NLPSSVKVLDVYGCPKLESIAERL-DNNTSLETISIYNCENLK------------ILPSGLHKLHQ 138 (357)
Q Consensus 85 ~-------------~l~~~L~~L~l~~c~~~~~~~~~~-~~~~~L~~L~l~~c~~l~------------~l~~~~~~l~~ 138 (357)
. .+++ |..|.+++ +.+..++.+. .....++.+.+.....+- ..+..+++..-
T Consensus 148 Nan~i~Cir~~al~dL~~-l~lLslyD-n~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPS-LSLLSLYD-NKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred ChhhhcchhHHHHHHhhh-cchhcccc-hhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 7 7788 88888888 6777666533 223334444443311110 00111111100
Q ss_pred ----------------------ccee---ecccCCCccccCC-CCcCcccccEEEeecCCCcccccccccCCCCCceEEe
Q 043298 139 ----------------------LREI---WIRECGNLVSFPE-GGLPCAKLRRLGIYDCERLEALPKGLHNLSSLQELTI 192 (357)
Q Consensus 139 ----------------------L~~L---~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 192 (357)
++.+ ..+.|......|. -+..+++|+.|++++|.....-+.+|....+++.|.+
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL 305 (498)
T ss_pred cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence 1111 1122222222222 2445677777777774443333456777777777777
Q ss_pred cC-ccCCccC--CCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEee
Q 043298 193 GG-ELPSLEE--DGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIG 242 (357)
Q Consensus 193 ~~-~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~ 242 (357)
.. .+..+.. +..+..|+.|++++ ++++.+.+. .|.....|.+|++-
T Consensus 306 ~~N~l~~v~~~~f~~ls~L~tL~L~~-N~it~~~~~---aF~~~~~l~~l~l~ 354 (498)
T KOG4237|consen 306 TRNKLEFVSSGMFQGLSGLKTLSLYD-NQITTVAPG---AFQTLFSLSTLNLL 354 (498)
T ss_pred CcchHHHHHHHhhhccccceeeeecC-CeeEEEecc---cccccceeeeeehc
Confidence 77 5555444 33356777777777 455555543 45666677777664
No 22
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.03 E-value=2e-12 Score=114.49 Aligned_cols=281 Identities=17% Similarity=0.253 Sum_probs=156.6
Q ss_pred ceeccCCccccccc---cccccccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCCCCCCc
Q 043298 2 LSIKHCRSLTYIAA---VQLPSSLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKYELPAT 78 (357)
Q Consensus 2 l~~~~c~~l~~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~ 78 (357)
|.++||.....-+. ...+|+++.|.+.+|.+++...... +.+... .|++|.+..|.++++. .
T Consensus 143 LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~s-----la~~C~--~l~~l~L~~c~~iT~~--------~ 207 (483)
T KOG4341|consen 143 LSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLS-----LARYCR--KLRHLNLHSCSSITDV--------S 207 (483)
T ss_pred ccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHH-----HHHhcc--hhhhhhhcccchhHHH--------H
Confidence 56777765443221 2237999999999999887744321 345666 8999999999998887 3
Q ss_pred ccceecc-cCCCcceEEEecCCCCchh--chhccCCCCcccEEEcccccCccc--cCccccCccccceeecccCCCcccc
Q 043298 79 LESLEVG-NLPSSVKVLDVYGCPKLES--IAERLDNNTSLETISIYNCENLKI--LPSGLHKLHQLREIWIRECGNLVSF 153 (357)
Q Consensus 79 L~~L~l~-~l~~~L~~L~l~~c~~~~~--~~~~~~~~~~L~~L~l~~c~~l~~--l~~~~~~l~~L~~L~l~~~~~l~~~ 153 (357)
|+. +. .+|+ |++|++++|+.++. +-.....+..++.+...+|..++. +-..-..+..+.++++..|..+++.
T Consensus 208 Lk~--la~gC~k-L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~ 284 (483)
T KOG4341|consen 208 LKY--LAEGCRK-LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDE 284 (483)
T ss_pred HHH--HHHhhhh-HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccch
Confidence 332 12 7777 88888888887765 111112233356665566654431 1111233444555555555444432
Q ss_pred C--CCCcCcccccEEEeecCCCcccccc-cc-cCCCCCceEEecC--ccCCc--c-CCCCCCccceEEecCCcchhhhhh
Q 043298 154 P--EGGLPCAKLRRLGIYDCERLEALPK-GL-HNLSSLQELTIGG--ELPSL--E-EDGLPTNLHSLDIWGNMEIWKSMI 224 (357)
Q Consensus 154 ~--~~~~~l~~L~~L~l~~~~~~~~~~~-~~-~~l~~L~~L~l~~--~~~~~--~-~~~~~~~L~~L~l~~~~~l~~~~~ 224 (357)
. .....+..|+.+..++|..+.+.+- .+ .+..+|+.+.+.. .++.. . -....+.|+.+++.+|..+.+...
T Consensus 285 ~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL 364 (483)
T KOG4341|consen 285 DLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTL 364 (483)
T ss_pred HHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhH
Confidence 2 1122345566666666555443321 12 3445666666655 22111 1 123346677777777666555422
Q ss_pred hcccccCCCCCcceEEeecCCCCCCcCccccccccCCCCCCCCccEEEcCccccCccc-ccccccccccCeeccccCCCC
Q 043298 225 ERGRGFHRFSSLGHLKIGGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLEHL-SSSIVDLQNLTSLGLYNCPKL 303 (357)
Q Consensus 225 ~~~~~l~~~~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i-~~~~~~~~~L~~L~l~~c~~l 303 (357)
. ..-.+++.|+.+.+++ |..+++- ....+++..+....|+.+.+++|+.+.+- -..+..+++|+.+++.+|..+
T Consensus 365 ~--sls~~C~~lr~lslsh-ce~itD~--gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 365 A--SLSRNCPRLRVLSLSH-CELITDE--GIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDV 439 (483)
T ss_pred h--hhccCCchhccCChhh-hhhhhhh--hhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhh
Confidence 1 1235667777777776 6544332 12222333355667777777777766532 223455667777777777665
Q ss_pred cc
Q 043298 304 KY 305 (357)
Q Consensus 304 ~~ 305 (357)
.+
T Consensus 440 tk 441 (483)
T KOG4341|consen 440 TK 441 (483)
T ss_pred hh
Confidence 54
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.95 E-value=3e-10 Score=114.00 Aligned_cols=79 Identities=27% Similarity=0.379 Sum_probs=43.9
Q ss_pred ceEEEecCCCCchhchhccCCCCcccEEEcccccCccccCccccCccccceeecccCCCccccCCCCcCcccccEEEeec
Q 043298 91 VKVLDVYGCPKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSFPEGGLPCAKLRRLGIYD 170 (357)
Q Consensus 91 L~~L~l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~ 170 (357)
|+.||+++|..+..+|..++.+.+|++|++++ ..++.+|.+++++.+|.+|++..+..+..+|.....+++|+.|.+..
T Consensus 573 LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 573 LRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred eEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence 55666665555555555555455566666655 55555565666666666666555444444444344455566555543
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.93 E-value=8.1e-11 Score=106.50 Aligned_cols=13 Identities=15% Similarity=0.107 Sum_probs=7.8
Q ss_pred ccccceeeccccc
Q 043298 19 PSSLKNLQIRDCY 31 (357)
Q Consensus 19 ~~~L~~L~l~~~~ 31 (357)
+++|++|+++++.
T Consensus 22 l~~L~~l~l~~~~ 34 (319)
T cd00116 22 LLCLQVLRLEGNT 34 (319)
T ss_pred HhhccEEeecCCC
Confidence 3456666666655
No 25
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.91 E-value=6.9e-10 Score=111.44 Aligned_cols=247 Identities=21% Similarity=0.219 Sum_probs=141.0
Q ss_pred CccEEEEecCCCccccccCCCCCCcccceecccCCCcceEEEecCCC-Cchhchhc-cCCCCcccEEEcccccCccccCc
Q 043298 54 LLEELFVFNCDSLTCIFSKYELPATLESLEVGNLPSSVKVLDVYGCP-KLESIAER-LDNNTSLETISIYNCENLKILPS 131 (357)
Q Consensus 54 ~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~l~~~L~~L~l~~c~-~~~~~~~~-~~~~~~L~~L~l~~c~~l~~l~~ 131 (357)
..|.+.+.+ +....+ +... ..|. |+.|-+.+.. .+..++.. +..++.|+.|++++|..+..+|.
T Consensus 524 ~~rr~s~~~-~~~~~~-~~~~-----------~~~~-L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~ 589 (889)
T KOG4658|consen 524 SVRRMSLMN-NKIEHI-AGSS-----------ENPK-LRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS 589 (889)
T ss_pred heeEEEEec-cchhhc-cCCC-----------CCCc-cceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh
Confidence 566666665 344443 3222 2233 6666666522 14444442 22455588888888888888888
Q ss_pred cccCccccceeecccCCCccccCCCCcCcccccEEEeecCCCcccccccccCCCCCceEEecC-c----cCCccCCCCCC
Q 043298 132 GLHKLHQLREIWIRECGNLVSFPEGGLPCAKLRRLGIYDCERLEALPKGLHNLSSLQELTIGG-E----LPSLEEDGLPT 206 (357)
Q Consensus 132 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~----~~~~~~~~~~~ 206 (357)
.++.+-+|+.|++++ ..+..+|.++.++..|.+|++..+.....++..+..+++|++|.+.. . ...+.+...+.
T Consensus 590 ~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le 668 (889)
T KOG4658|consen 590 SIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLE 668 (889)
T ss_pred HHhhhhhhhcccccC-CCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhccc
Confidence 888888888888887 56778888888888888888887776666666666688888888876 2 11122233345
Q ss_pred ccceEEecCCcchhhhhhhcccccCCCCCcceE----EeecCCCCCCcCccccccccCCCCCCCCccEEEcCccccCccc
Q 043298 207 NLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHL----KIGGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLEHL 282 (357)
Q Consensus 207 ~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L----~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i 282 (357)
+|+.+....... .... .+..++.|..+ .+.+ |.....+. . +..+.+|+.|.+.+|......
T Consensus 669 ~L~~ls~~~~s~-~~~e-----~l~~~~~L~~~~~~l~~~~-~~~~~~~~-~-------~~~l~~L~~L~i~~~~~~e~~ 733 (889)
T KOG4658|consen 669 HLENLSITISSV-LLLE-----DLLGMTRLRSLLQSLSIEG-CSKRTLIS-S-------LGSLGNLEELSILDCGISEIV 733 (889)
T ss_pred chhhheeecchh-HhHh-----hhhhhHHHHHHhHhhhhcc-cccceeec-c-------cccccCcceEEEEcCCCchhh
Confidence 555555544222 1111 12233333322 2222 22111111 1 235667777777776543221
Q ss_pred ccc-----ccc-ccccCeeccccCCCCcccCCCCCccCCceEEecCChhhHHHh
Q 043298 283 SSS-----IVD-LQNLTSLGLYNCPKLKYFPEKGLPSSLLLLWIEGCPLIEEKC 330 (357)
Q Consensus 283 ~~~-----~~~-~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~l~~~~ 330 (357)
..+ ... ++++..+.+.+|..++.+....++++|+.|.+.+|..++++.
T Consensus 734 ~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 734 IEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDII 787 (889)
T ss_pred cccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCC
Confidence 111 111 445666666666666665554566777777777776666543
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.83 E-value=3.3e-10 Score=102.47 Aligned_cols=83 Identities=19% Similarity=0.121 Sum_probs=39.2
Q ss_pred CCcccEEEcccccCccccCccccCcc---ccceeecccCCCcc----ccCCCCcCc-ccccEEEeecCCCcc----cccc
Q 043298 112 NTSLETISIYNCENLKILPSGLHKLH---QLREIWIRECGNLV----SFPEGGLPC-AKLRRLGIYDCERLE----ALPK 179 (357)
Q Consensus 112 ~~~L~~L~l~~c~~l~~l~~~~~~l~---~L~~L~l~~~~~l~----~~~~~~~~l-~~L~~L~l~~~~~~~----~~~~ 179 (357)
..+|++|++++|......+..+..+. +|++|++++|.... .+...+..+ ++|+.|++++|.... .++.
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 44577777766433222233333333 36677776654221 111122223 566666666655331 2223
Q ss_pred cccCCCCCceEEecC
Q 043298 180 GLHNLSSLQELTIGG 194 (357)
Q Consensus 180 ~~~~l~~L~~L~l~~ 194 (357)
.+..+++|++|++.+
T Consensus 160 ~~~~~~~L~~L~l~~ 174 (319)
T cd00116 160 ALRANRDLKELNLAN 174 (319)
T ss_pred HHHhCCCcCEEECcC
Confidence 344455566666655
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.80 E-value=2.7e-10 Score=104.80 Aligned_cols=185 Identities=24% Similarity=0.309 Sum_probs=118.3
Q ss_pred EEcccccCccccCccccCccccceeecccCCCccccCCCCcCcccccEEEeecCCCcccccccccCCCCCceEEecC-cc
Q 043298 118 ISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSFPEGGLPCAKLRRLGIYDCERLEALPKGLHNLSSLQELTIGG-EL 196 (357)
Q Consensus 118 L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~ 196 (357)
.+++. +++.++|..+..+..|+.+.+.. +.+..+|.....+..|+.++++. +.+..+|..+..++ |+.|-+.+ .+
T Consensus 80 aDlsr-NR~~elp~~~~~f~~Le~liLy~-n~~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~lp-Lkvli~sNNkl 155 (722)
T KOG0532|consen 80 ADLSR-NRFSELPEEACAFVSLESLILYH-NCIRTIPEAICNLEALTFLDLSS-NQLSHLPDGLCDLP-LKVLIVSNNKL 155 (722)
T ss_pred hhccc-cccccCchHHHHHHHHHHHHHHh-ccceecchhhhhhhHHHHhhhcc-chhhcCChhhhcCc-ceeEEEecCcc
Confidence 45555 55556666665566666665554 34555665555566666666665 44555555555554 56666666 55
Q ss_pred CCccC-CCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeecCCCCCCcCccccccccCCCCCCCCccEEEcCc
Q 043298 197 PSLEE-DGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDMVSFPLEDKRLGTALPLPASLTSLWIED 275 (357)
Q Consensus 197 ~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 275 (357)
+.+|. .+..+.|..|+.+.| .+..++. .+..+.+|+.|.+.. +.+..+|++. ..-.|..||++.
T Consensus 156 ~~lp~~ig~~~tl~~ld~s~n-ei~slps----ql~~l~slr~l~vrR--n~l~~lp~El--------~~LpLi~lDfSc 220 (722)
T KOG0532|consen 156 TSLPEEIGLLPTLAHLDVSKN-EIQSLPS----QLGYLTSLRDLNVRR--NHLEDLPEEL--------CSLPLIRLDFSC 220 (722)
T ss_pred ccCCcccccchhHHHhhhhhh-hhhhchH----HhhhHHHHHHHHHhh--hhhhhCCHHH--------hCCceeeeeccc
Confidence 55554 445567777777774 4455553 467778888888888 6777788776 234588888885
Q ss_pred cccCcccccccccccccCeeccccCCCCcccCC----CCCccCCceEEecCC
Q 043298 276 FPNLEHLSSSIVDLQNLTSLGLYNCPKLKYFPE----KGLPSSLLLLWIEGC 323 (357)
Q Consensus 276 c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~----~~~~~~L~~L~i~~c 323 (357)
+++..||..|..+..|++|.+.+ +-++.-|. .|...=.+.|++..|
T Consensus 221 -Nkis~iPv~fr~m~~Lq~l~Len-NPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 221 -NKISYLPVDFRKMRHLQVLQLEN-NPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred -Cceeecchhhhhhhhheeeeecc-CCCCCChHHHHhccceeeeeeecchhc
Confidence 78888888888888888888876 45655333 233344566776666
No 28
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.58 E-value=3.7e-07 Score=83.18 Aligned_cols=58 Identities=28% Similarity=0.529 Sum_probs=32.5
Q ss_pred ceEEEecCCCCchhchhccCCCCcccEEEcccccCccccCccccCccccceeecccCCCccccC
Q 043298 91 VKVLDVYGCPKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSFP 154 (357)
Q Consensus 91 L~~L~l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~ 154 (357)
+++|++++| .++.+|. .|.+|++|.+++|..++.+|..+ .++|+.|++++|..+..+|
T Consensus 54 l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 54 SGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred CCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc
Confidence 666666665 5555552 45556666666666665555433 2356666666655555444
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.54 E-value=4.2e-09 Score=97.17 Aligned_cols=189 Identities=20% Similarity=0.291 Sum_probs=101.3
Q ss_pred ceEEEecCCCCchhchhccCCCCcccEEEcccccCccccCccccCccccceeecccCCCccccCCCCcCcccccEEEeec
Q 043298 91 VKVLDVYGCPKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSFPEGGLPCAKLRRLGIYD 170 (357)
Q Consensus 91 L~~L~l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~ 170 (357)
-...+++. +++.++|...+....|+.+.++. +.+..+|..+.++..|+.++++. +.+..+|..+..+| |+.|-+++
T Consensus 77 t~~aDlsr-NR~~elp~~~~~f~~Le~liLy~-n~~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 77 TVFADLSR-NRFSELPEEACAFVSLESLILYH-NCIRTIPEAICNLEALTFLDLSS-NQLSHLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred hhhhhccc-cccccCchHHHHHHHHHHHHHHh-ccceecchhhhhhhHHHHhhhcc-chhhcCChhhhcCc-ceeEEEec
Confidence 34455555 55666665553344455665555 55666666666666666666665 44555555555553 55655554
Q ss_pred CCCcccccccccCCCCCceEEecC-ccCCccC-CCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeecCCCCC
Q 043298 171 CERLEALPKGLHNLSSLQELTIGG-ELPSLEE-DGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDM 248 (357)
Q Consensus 171 ~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l 248 (357)
++++.+|+.++..+.|..|+.+. .+..+|. .+.+.+|+.|.+.. +.+..++++ +. .-.|..||++. +++
T Consensus 153 -Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrR-n~l~~lp~E----l~-~LpLi~lDfSc--Nki 223 (722)
T KOG0532|consen 153 -NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEE----LC-SLPLIRLDFSC--NKI 223 (722)
T ss_pred -CccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhh-hhhhhCCHH----Hh-CCceeeeeccc--Cce
Confidence 44566666666666666666665 5544443 44455666666665 344444433 22 12334444443 666
Q ss_pred CcCccccccccCCCCCCCCccEEEcCccccCccccccc--ccccc-cCeeccccC
Q 043298 249 VSFPLEDKRLGTALPLPASLTSLWIEDFPNLEHLSSSI--VDLQN-LTSLGLYNC 300 (357)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~--~~~~~-L~~L~l~~c 300 (357)
..+|..+ ..+..|++|-+.+ +=+.+-|+.+ ++..+ .++|+++.|
T Consensus 224 s~iPv~f-------r~m~~Lq~l~Len-NPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 224 SYLPVDF-------RKMRHLQVLQLEN-NPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred eecchhh-------hhhhhheeeeecc-CCCCCChHHHHhccceeeeeeecchhc
Confidence 6666655 4566666666665 3345444332 11111 355555555
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.54 E-value=5.6e-08 Score=83.27 Aligned_cols=222 Identities=18% Similarity=0.177 Sum_probs=121.7
Q ss_pred CccEEEEecCCCccccccCCCCCCcccceecccCCCcceEEEecCCCCchhchhccCCCCcccEEEcccccCccccCccc
Q 043298 54 LLEELFVFNCDSLTCIFSKYELPATLESLEVGNLPSSVKVLDVYGCPKLESIAERLDNNTSLETISIYNCENLKILPSGL 133 (357)
Q Consensus 54 ~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~l~~~L~~L~l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~ 133 (357)
.|+.|.+++-.. .+ ......+++-..+++.+.+ |..+.++.|..-.........|. |..+.+.. .-+...|. +
T Consensus 183 ~l~~l~vs~~~~--p~-~~sni~~~~l~f~l~~f~~-l~~~~~s~~~~~~i~~~~~~kpt-l~t~~v~~-s~~~~~~~-l 255 (490)
T KOG1259|consen 183 QLVALVVTPVKD--PI-DRSNIIPNRLSFNLNAFRN-LKTLKFSALSTENIVDIELLKPT-LQTICVHN-TTIQDVPS-L 255 (490)
T ss_pred heeEEEecCCCC--CC-ccccccccccccchHHhhh-hheeeeeccchhheeceeecCch-hheeeeec-cccccccc-c
Confidence 677777776321 11 1123334555566777777 88888888753211111111333 77766654 33332221 1
Q ss_pred cCccccceeecccCCCccccC--CCCcCcccccEEEeecCCCcccccccccCCCCCceEEecC-ccCCccCCCCCCccce
Q 043298 134 HKLHQLREIWIRECGNLVSFP--EGGLPCAKLRRLGIYDCERLEALPKGLHNLSSLQELTIGG-ELPSLEEDGLPTNLHS 210 (357)
Q Consensus 134 ~~l~~L~~L~l~~~~~l~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~L~~ 210 (357)
-..+.+....-.. +....-+ ..+-..+.|+++++++ +.++.+.+++.-.|.++.|+++. ++..+....++++|+.
T Consensus 256 ~pe~~~~D~~~~E-~~t~~G~~~~~~dTWq~LtelDLS~-N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~ 333 (490)
T KOG1259|consen 256 LPETILADPSGSE-PSTSNGSALVSADTWQELTELDLSG-NLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQL 333 (490)
T ss_pred cchhhhcCccCCC-CCccCCceEEecchHhhhhhccccc-cchhhhhhhhhhccceeEEeccccceeeehhhhhcccceE
Confidence 1111221111111 0000000 1122235677777777 44555656666777788888877 7766666677778888
Q ss_pred EEecCCcchhhhhhhcccccCCCCCcceEEeecCCCCCCcCccccccccCCCCCCCCccEEEcCccccCcccc--ccccc
Q 043298 211 LDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLEHLS--SSIVD 288 (357)
Q Consensus 211 L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~--~~~~~ 288 (357)
||++++ .+....- | -.++-++++|.+++ +.++++..-. .+-+|+.||+++ +++..+. .++..
T Consensus 334 LDLS~N-~Ls~~~G---w-h~KLGNIKtL~La~--N~iE~LSGL~--------KLYSLvnLDl~~-N~Ie~ldeV~~IG~ 397 (490)
T KOG1259|consen 334 LDLSGN-LLAECVG---W-HLKLGNIKTLKLAQ--NKIETLSGLR--------KLYSLVNLDLSS-NQIEELDEVNHIGN 397 (490)
T ss_pred eecccc-hhHhhhh---h-HhhhcCEeeeehhh--hhHhhhhhhH--------hhhhheeccccc-cchhhHHHhccccc
Confidence 888874 3333321 2 24566777788877 5566555433 566778888877 5555442 35677
Q ss_pred ccccCeeccccC
Q 043298 289 LQNLTSLGLYNC 300 (357)
Q Consensus 289 ~~~L~~L~l~~c 300 (357)
+|.|+.+.+.++
T Consensus 398 LPCLE~l~L~~N 409 (490)
T KOG1259|consen 398 LPCLETLRLTGN 409 (490)
T ss_pred ccHHHHHhhcCC
Confidence 777777777763
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.53 E-value=2.5e-08 Score=85.39 Aligned_cols=130 Identities=12% Similarity=0.143 Sum_probs=86.6
Q ss_pred cccEEEcccccCccccCccccCccccceeecccCCCccccCCCCcCcccccEEEeecCCCcccccccccCCCCCceEEec
Q 043298 114 SLETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSFPEGGLPCAKLRRLGIYDCERLEALPKGLHNLSSLQELTIG 193 (357)
Q Consensus 114 ~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 193 (357)
.|+++++++ +.++.+.+++.-.|+++.|+++.+ .+..+-. +..+++|++|++++ +.+..+-.+-..+-++++|.+.
T Consensus 285 ~LtelDLS~-N~I~~iDESvKL~Pkir~L~lS~N-~i~~v~n-La~L~~L~~LDLS~-N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 285 ELTELDLSG-NLITQIDESVKLAPKLRRLILSQN-RIRTVQN-LAELPQLQLLDLSG-NLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhccccc-cchhhhhhhhhhccceeEEecccc-ceeeehh-hhhcccceEeeccc-chhHhhhhhHhhhcCEeeeehh
Confidence 477788877 777777777777788888888774 4444433 55567888888877 3344443333456677888887
Q ss_pred C-ccCCccCCCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeecCCCCCCcCc
Q 043298 194 G-ELPSLEEDGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDMVSFP 252 (357)
Q Consensus 194 ~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~~~ 252 (357)
. .++.+...+.+-+|..||+++ ++++..... ..++++|-|+.+.+.+ +-+..++
T Consensus 361 ~N~iE~LSGL~KLYSLvnLDl~~-N~Ie~ldeV--~~IG~LPCLE~l~L~~--NPl~~~v 415 (490)
T KOG1259|consen 361 QNKIETLSGLRKLYSLVNLDLSS-NQIEELDEV--NHIGNLPCLETLRLTG--NPLAGSV 415 (490)
T ss_pred hhhHhhhhhhHhhhhheeccccc-cchhhHHHh--cccccccHHHHHhhcC--CCccccc
Confidence 7 666666666667788888888 444444433 4568888888888887 4444433
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.53 E-value=2.9e-08 Score=80.59 Aligned_cols=126 Identities=21% Similarity=0.272 Sum_probs=32.6
Q ss_pred CCcccEEEcccccCccccCcccc-CccccceeecccCCCccccCCCCcCcccccEEEeecCCCcccccccc-cCCCCCce
Q 043298 112 NTSLETISIYNCENLKILPSGLH-KLHQLREIWIRECGNLVSFPEGGLPCAKLRRLGIYDCERLEALPKGL-HNLSSLQE 189 (357)
Q Consensus 112 ~~~L~~L~l~~c~~l~~l~~~~~-~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~ 189 (357)
+..+++|++.+ +.+..+. .++ .+.+|+.|++++ +.++.+. ++..+++|+.|++++ +.++.+.+.+ ..+++|++
T Consensus 18 ~~~~~~L~L~~-n~I~~Ie-~L~~~l~~L~~L~Ls~-N~I~~l~-~l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 18 PVKLRELNLRG-NQISTIE-NLGATLDKLEVLDLSN-NQITKLE-GLPGLPRLKTLDLSN-NRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp --------------------S--TT-TT--EEE-TT-S--S--T-T----TT--EEE--S-S---S-CHHHHHH-TT--E
T ss_pred ccccccccccc-ccccccc-chhhhhcCCCEEECCC-CCCcccc-CccChhhhhhcccCC-CCCCccccchHHhCCcCCE
Confidence 33456666655 4555443 333 355566666655 3444443 233455666666655 3333343333 24566666
Q ss_pred EEecC-ccCCc---cCCCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeec
Q 043298 190 LTIGG-ELPSL---EEDGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGG 243 (357)
Q Consensus 190 L~l~~-~~~~~---~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~ 243 (357)
|++++ .+..+ .....+++|+.|++.+|+.-. ........+..+|+|+.||-..
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~-~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE-KKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG-STTHHHHHHHH-TT-SEETTEE
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccc-hhhHHHHHHHHcChhheeCCEE
Confidence 66655 33322 223335666666666644321 1111112344556666665443
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=8.2e-09 Score=92.40 Aligned_cols=153 Identities=16% Similarity=0.156 Sum_probs=86.1
Q ss_pred cCCCcceEEEecCCCCchhchhcc--CCCCcccEEEcccccCcc-ccCccccCccccceeecccCCCccccCCCCcCccc
Q 043298 86 NLPSSVKVLDVYGCPKLESIAERL--DNNTSLETISIYNCENLK-ILPSGLHKLHQLREIWIRECGNLVSFPEGGLPCAK 162 (357)
Q Consensus 86 ~l~~~L~~L~l~~c~~~~~~~~~~--~~~~~L~~L~l~~c~~l~-~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~ 162 (357)
.+|+ |+.|+++. +.+..+.... .....|+.|.++.|.--. .+-..+..+|+|+.|++.++..+.........++.
T Consensus 170 qLp~-Le~LNls~-Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~ 247 (505)
T KOG3207|consen 170 QLPS-LENLNLSS-NRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQT 247 (505)
T ss_pred hccc-chhccccc-ccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhH
Confidence 5556 88888887 5555433322 234458888888875321 23333456788888888876533322222233457
Q ss_pred ccEEEeecCCCcccc-cccccCCCCCceEEecC-ccCCccC--C------CCCCccceEEecCCcchhhhhhhcccccCC
Q 043298 163 LRRLGIYDCERLEAL-PKGLHNLSSLQELTIGG-ELPSLEE--D------GLPTNLHSLDIWGNMEIWKSMIERGRGFHR 232 (357)
Q Consensus 163 L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~-~~~~~~~--~------~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~ 232 (357)
|++|++++|+.+..- ....+.++.|..|+++. ++.++.. . ...++|+.|++..|+ +.+...- ..+..
T Consensus 248 L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~-I~~w~sl--~~l~~ 324 (505)
T KOG3207|consen 248 LQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN-IRDWRSL--NHLRT 324 (505)
T ss_pred HhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCc-ccccccc--chhhc
Confidence 888888886654432 12456778888888777 5444321 1 235777777777743 3222211 13344
Q ss_pred CCCcceEEeec
Q 043298 233 FSSLGHLKIGG 243 (357)
Q Consensus 233 ~~~L~~L~l~~ 243 (357)
+++|+.|.+..
T Consensus 325 l~nlk~l~~~~ 335 (505)
T KOG3207|consen 325 LENLKHLRITL 335 (505)
T ss_pred cchhhhhhccc
Confidence 45556555544
No 34
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.47 E-value=1.2e-06 Score=79.90 Aligned_cols=90 Identities=30% Similarity=0.547 Sum_probs=57.9
Q ss_pred CCcccEEEcccccCccccCccccCccccceeecccCCCccccCCCCcCcccccEEEeecCCCcccccccccCCCCCceEE
Q 043298 112 NTSLETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSFPEGGLPCAKLRRLGIYDCERLEALPKGLHNLSSLQELT 191 (357)
Q Consensus 112 ~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 191 (357)
+.+++.|++++| .++++|. -.++|++|.+++|..++.+|..+ .++|+.|++++|..+..+|. +|+.|+
T Consensus 51 ~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L~ 118 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSLE 118 (426)
T ss_pred hcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccceEE
Confidence 456888888886 6777772 13468888888888877777544 24788888888766665553 466666
Q ss_pred ecC-ccCCccCCCCCCccceEEecC
Q 043298 192 IGG-ELPSLEEDGLPTNLHSLDIWG 215 (357)
Q Consensus 192 l~~-~~~~~~~~~~~~~L~~L~l~~ 215 (357)
+.. ....+ ...+++|++|.+.+
T Consensus 119 L~~n~~~~L--~~LPssLk~L~I~~ 141 (426)
T PRK15386 119 IKGSATDSI--KNVPNGLTSLSINS 141 (426)
T ss_pred eCCCCCccc--ccCcchHhheeccc
Confidence 654 22222 23345677776654
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.46 E-value=1.8e-07 Score=87.39 Aligned_cols=100 Identities=21% Similarity=0.362 Sum_probs=48.3
Q ss_pred ceEEEecCCCCchhchhccCCCC-cccEEEcccccCccccCccccCccccceeecccCCCccccCCCCcCcccccEEEee
Q 043298 91 VKVLDVYGCPKLESIAERLDNNT-SLETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSFPEGGLPCAKLRRLGIY 169 (357)
Q Consensus 91 L~~L~l~~c~~~~~~~~~~~~~~-~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~ 169 (357)
+..|++.+ +.+++++...+... +|+.|++++ +.+..+|..+..+++|+.|+++. +.+.++|......++|+.++++
T Consensus 118 l~~L~l~~-n~i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~~~L~~L~ls 194 (394)
T COG4886 118 LTSLDLDN-NNITDIPPLIGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSF-NDLSDLPKLLSNLSNLNNLDLS 194 (394)
T ss_pred eeEEecCC-cccccCccccccchhhcccccccc-cchhhhhhhhhccccccccccCC-chhhhhhhhhhhhhhhhheecc
Confidence 55555554 45555554443332 455555555 45555544445555555555555 3344444433344455555555
Q ss_pred cCCCcccccccccCCCCCceEEecC
Q 043298 170 DCERLEALPKGLHNLSSLQELTIGG 194 (357)
Q Consensus 170 ~~~~~~~~~~~~~~l~~L~~L~l~~ 194 (357)
+ +.+..+|..+.....|+++.+.+
T Consensus 195 ~-N~i~~l~~~~~~~~~L~~l~~~~ 218 (394)
T COG4886 195 G-NKISDLPPEIELLSALEELDLSN 218 (394)
T ss_pred C-CccccCchhhhhhhhhhhhhhcC
Confidence 4 33444444333334455555444
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.42 E-value=1.8e-07 Score=87.32 Aligned_cols=168 Identities=25% Similarity=0.362 Sum_probs=110.6
Q ss_pred CcccEEEcccccCccccCccccCcc-ccceeecccCCCccccCCCCcCcccccEEEeecCCCcccccccccCCCCCceEE
Q 043298 113 TSLETISIYNCENLKILPSGLHKLH-QLREIWIRECGNLVSFPEGGLPCAKLRRLGIYDCERLEALPKGLHNLSSLQELT 191 (357)
Q Consensus 113 ~~L~~L~l~~c~~l~~l~~~~~~l~-~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 191 (357)
..++.|.+.+ +.+..++.....+. +|+.|++++ +.+..+|.....+++|+.|++++ +.+..++...+..+.|+.|+
T Consensus 116 ~~l~~L~l~~-n~i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDN-NNITDIPPLIGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSF-NDLSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCC-cccccCccccccchhhcccccccc-cchhhhhhhhhccccccccccCC-chhhhhhhhhhhhhhhhhee
Confidence 3477777776 77777776666664 788888877 56677665666777888888877 44666665555777788888
Q ss_pred ecC-ccCCccCC-CCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeecCCCCCCcCccccccccCCCCCCCCcc
Q 043298 192 IGG-ELPSLEED-GLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDMVSFPLEDKRLGTALPLPASLT 269 (357)
Q Consensus 192 l~~-~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~ 269 (357)
+++ .+..+|.. ..+..|+++.++++..+.... .+..+..+..+.+.+ +.+..++... ..+++++
T Consensus 193 ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~-----~~~~~~~l~~l~l~~--n~~~~~~~~~-------~~l~~l~ 258 (394)
T COG4886 193 LSGNKISDLPPEIELLSALEELDLSNNSIIELLS-----SLSNLKNLSGLELSN--NKLEDLPESI-------GNLSNLE 258 (394)
T ss_pred ccCCccccCchhhhhhhhhhhhhhcCCcceecch-----hhhhcccccccccCC--ceeeeccchh-------ccccccc
Confidence 877 77777764 355568888887754444333 235556666666555 4444433333 3566677
Q ss_pred EEEcCccccCcccccccccccccCeecccc
Q 043298 270 SLWIEDFPNLEHLSSSIVDLQNLTSLGLYN 299 (357)
Q Consensus 270 ~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~ 299 (357)
.|++++ +.+..++. +....+++.+++.+
T Consensus 259 ~L~~s~-n~i~~i~~-~~~~~~l~~L~~s~ 286 (394)
T COG4886 259 TLDLSN-NQISSISS-LGSLTNLRELDLSG 286 (394)
T ss_pred eecccc-cccccccc-ccccCccCEEeccC
Confidence 888777 56666665 56677777777776
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.40 E-value=1.1e-07 Score=77.31 Aligned_cols=122 Identities=21% Similarity=0.293 Sum_probs=40.3
Q ss_pred CccEEEEecCCCccccccCCCCCCcccceecccCCCcceEEEecCCCCchhchhccCCCCcccEEEcccccCccccCccc
Q 043298 54 LLEELFVFNCDSLTCIFSKYELPATLESLEVGNLPSSVKVLDVYGCPKLESIAERLDNNTSLETISIYNCENLKILPSGL 133 (357)
Q Consensus 54 ~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~l~~~L~~L~l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~ 133 (357)
.+++|++++ +.++.+ .. +. . .+.+ |+.|++++ +.++.+.... .+..|+.|++++ +.++++...+
T Consensus 20 ~~~~L~L~~-n~I~~I-e~---L~---~----~l~~-L~~L~Ls~-N~I~~l~~l~-~L~~L~~L~L~~-N~I~~i~~~l 83 (175)
T PF14580_consen 20 KLRELNLRG-NQISTI-EN---LG---A----TLDK-LEVLDLSN-NQITKLEGLP-GLPRLKTLDLSN-NRISSISEGL 83 (175)
T ss_dssp ------------------S--------T----T-TT---EEE-TT-S--S--TT-----TT--EEE--S-S---S-CHHH
T ss_pred ccccccccc-cccccc-cc---hh---h----hhcC-CCEEECCC-CCCccccCcc-ChhhhhhcccCC-CCCCccccch
Confidence 578888888 445544 21 11 0 2333 78888887 5677665433 345588888877 7777775544
Q ss_pred -cCccccceeecccCCCccccCC--CCcCcccccEEEeecCCCcccccc----cccCCCCCceEEec
Q 043298 134 -HKLHQLREIWIRECGNLVSFPE--GGLPCAKLRRLGIYDCERLEALPK----GLHNLSSLQELTIG 193 (357)
Q Consensus 134 -~~l~~L~~L~l~~~~~l~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~ 193 (357)
..+++|++|++++ +.+.++.. .+..+++|+.|++.+|+... .+. .+..+|+|+.||-.
T Consensus 84 ~~~lp~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~-~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 84 DKNLPNLQELYLSN-NKISDLNELEPLSSLPKLRVLSLEGNPVCE-KKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp HHH-TT--EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-GGGG-STTHHHHHHHH-TT-SEETTE
T ss_pred HHhCCcCCEEECcC-CcCCChHHhHHHHcCCCcceeeccCCcccc-hhhHHHHHHHHcChhheeCCE
Confidence 3577888888876 45555543 34456777777777755332 222 34556666666543
No 38
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=2e-08 Score=85.86 Aligned_cols=37 Identities=14% Similarity=0.144 Sum_probs=16.0
Q ss_pred CCCCccEEEcCccccCcc-cccccccccccCeeccccC
Q 043298 264 LPASLTSLWIEDFPNLEH-LSSSIVDLQNLTSLGLYNC 300 (357)
Q Consensus 264 ~~~~L~~L~l~~c~~l~~-i~~~~~~~~~L~~L~l~~c 300 (357)
.++.|++|.++.|-.+.. .--.+...|.|.+|++.+|
T Consensus 336 kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 336 KFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 334555555555543221 0011234455555555554
No 39
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=5.3e-07 Score=81.06 Aligned_cols=173 Identities=19% Similarity=0.180 Sum_probs=91.4
Q ss_pred CccccceeecccCCCccccCC--CCcCcccccEEEeecCCCcccc---cccccCCCCCceEEecC-ccCCccC---CCCC
Q 043298 135 KLHQLREIWIRECGNLVSFPE--GGLPCAKLRRLGIYDCERLEAL---PKGLHNLSSLQELTIGG-ELPSLEE---DGLP 205 (357)
Q Consensus 135 ~l~~L~~L~l~~~~~l~~~~~--~~~~l~~L~~L~l~~~~~~~~~---~~~~~~l~~L~~L~l~~-~~~~~~~---~~~~ 205 (357)
++.+|++..+.++ .+...+. ....|++++.|+++.| .+... -.....+|+|+.|+++. .+..... ....
T Consensus 119 n~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 119 NLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hHHhhhheeecCc-cccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 3556666666553 2333321 3344667777777663 22221 12335567777777766 3322211 2345
Q ss_pred CccceEEecCCcchh-hhhhhcccccCCCCCcceEEeecCCCCCCcCccccccccCCCCCCCCccEEEcCccccCcccc-
Q 043298 206 TNLHSLDIWGNMEIW-KSMIERGRGFHRFSSLGHLKIGGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLEHLS- 283 (357)
Q Consensus 206 ~~L~~L~l~~~~~l~-~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~- 283 (357)
+.|+.|.+++|.--. ++. +.+..+|+|+.|++.+ ...+....... ..+..|++|++++ +.+.+.+
T Consensus 197 ~~lK~L~l~~CGls~k~V~----~~~~~fPsl~~L~L~~-N~~~~~~~~~~-------~i~~~L~~LdLs~-N~li~~~~ 263 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQ----WILLTFPSLEVLYLEA-NEIILIKATST-------KILQTLQELDLSN-NNLIDFDQ 263 (505)
T ss_pred hhhheEEeccCCCCHHHHH----HHHHhCCcHHHhhhhc-ccccceecchh-------hhhhHHhhccccC-Cccccccc
Confidence 677777777765332 222 4566777777777777 32211111111 2556777777777 4555554
Q ss_pred -cccccccccCeeccccCCCCccc--CCC------CCccCCceEEecCC
Q 043298 284 -SSIVDLQNLTSLGLYNCPKLKYF--PEK------GLPSSLLLLWIEGC 323 (357)
Q Consensus 284 -~~~~~~~~L~~L~l~~c~~l~~l--~~~------~~~~~L~~L~i~~c 323 (357)
.....++.|..|.+..| .+..+ +.. ...++|+.|++...
T Consensus 264 ~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N 311 (505)
T KOG3207|consen 264 GYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISEN 311 (505)
T ss_pred ccccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccC
Confidence 23456677777777664 34442 221 22467777776653
No 40
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=1.3e-07 Score=80.96 Aligned_cols=176 Identities=18% Similarity=0.228 Sum_probs=101.5
Q ss_pred ceEEEecCCCCchh--chhccCCCCcccEEEcccccCccc-cCccccCccccceeecccCCCccccCC--CCcCcccccE
Q 043298 91 VKVLDVYGCPKLES--IAERLDNNTSLETISIYNCENLKI-LPSGLHKLHQLREIWIRECGNLVSFPE--GGLPCAKLRR 165 (357)
Q Consensus 91 L~~L~l~~c~~~~~--~~~~~~~~~~L~~L~l~~c~~l~~-l~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~l~~L~~ 165 (357)
|++||++. ..++. +......+++|+.|.+.+ .+++. +-..+..-.+|+.++++.|+.+++... .+.+|+.|.+
T Consensus 187 lq~lDLS~-s~it~stl~~iLs~C~kLk~lSlEg-~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 187 LQHLDLSN-SVITVSTLHGILSQCSKLKNLSLEG-LRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hHHhhcch-hheeHHHHHHHHHHHHhhhhccccc-cccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 66666665 34432 111112344566666655 33332 222333445677777777766665542 2345667777
Q ss_pred EEeecCCCcccccc-cccC-CCCCceEEecC-----ccCCccC-CCCCCccceEEecCCcchhhhhhhcccccCCCCCcc
Q 043298 166 LGIYDCERLEALPK-GLHN-LSSLQELTIGG-----ELPSLEE-DGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLG 237 (357)
Q Consensus 166 L~l~~~~~~~~~~~-~~~~-l~~L~~L~l~~-----~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~ 237 (357)
|+++.|...+..-. .+.+ -++|..|++++ ...++.. ...+|+|.+||++.|..+++.-.. .+.+++.|+
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~---~~~kf~~L~ 341 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQ---EFFKFNYLQ 341 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHH---HHHhcchhe
Confidence 77777655433211 1122 24677777766 2222222 345789999999999888864443 567889999
Q ss_pred eEEeecCCCCCCcCccccccccCCCCCCCCccEEEcCcccc
Q 043298 238 HLKIGGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPN 278 (357)
Q Consensus 238 ~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 278 (357)
+|.++. |..+. |..... +...++|.+|++.||-.
T Consensus 342 ~lSlsR-CY~i~--p~~~~~----l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 342 HLSLSR-CYDII--PETLLE----LNSKPSLVYLDVFGCVS 375 (419)
T ss_pred eeehhh-hcCCC--hHHeee----eccCcceEEEEeccccC
Confidence 999999 87642 221100 13568899999998843
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.94 E-value=1.9e-05 Score=52.46 Aligned_cols=59 Identities=25% Similarity=0.331 Sum_probs=41.9
Q ss_pred cccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCCCCCCcccceecccCCCcceEEEecCC
Q 043298 20 SSLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKYELPATLESLEVGNLPSSVKVLDVYGC 99 (357)
Q Consensus 20 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~l~~~L~~L~l~~c 99 (357)
|+|++|++++|. ++.+|.. .|..++ +|++|++++ +.++.+ ++.. +. .+++ |++|++++|
T Consensus 1 p~L~~L~l~~n~-l~~i~~~------~f~~l~--~L~~L~l~~-N~l~~i-~~~~-f~--------~l~~-L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNK-LTEIPPD------SFSNLP--NLETLDLSN-NNLTSI-PPDA-FS--------NLPN-LRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSST-ESEECTT------TTTTGT--TESEEEETS-SSESEE-ETTT-TT--------TSTT-ESEEEETSS
T ss_pred CcCcEEECCCCC-CCccCHH------HHcCCC--CCCEeEccC-CccCcc-CHHH-Hc--------CCCC-CCEEeCcCC
Confidence 578888888885 8888877 678888 888888886 567777 5442 22 3344 777777764
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.85 E-value=2.5e-05 Score=51.78 Aligned_cols=55 Identities=25% Similarity=0.399 Sum_probs=26.6
Q ss_pred ccEEEcccccCccccCc-cccCccccceeecccCCCccccCC-CCcCcccccEEEeecC
Q 043298 115 LETISIYNCENLKILPS-GLHKLHQLREIWIRECGNLVSFPE-GGLPCAKLRRLGIYDC 171 (357)
Q Consensus 115 L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~ 171 (357)
|++|++++ +.++.++. .+.++++|++|++++ +.+..++. .+..+++|++|++++|
T Consensus 3 L~~L~l~~-n~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 3 LESLDLSN-NKLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp ESEEEETS-STESEECTTTTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSS
T ss_pred CcEEECCC-CCCCccCHHHHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCC
Confidence 45555555 34554442 334555555555554 33344432 3444555555555544
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.84 E-value=1.9e-06 Score=80.83 Aligned_cols=75 Identities=21% Similarity=0.319 Sum_probs=33.7
Q ss_pred ceEEEecCCCCchhchhccCCCCcccEEEcccccCccccCccccCccccceeecccCCCccccCCCCcCcccccEEEeec
Q 043298 91 VKVLDVYGCPKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSFPEGGLPCAKLRRLGIYD 170 (357)
Q Consensus 91 L~~L~l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~ 170 (357)
|++|++++ +.++.+......+.+|++|++++ +.|+.+. .+..++.|+.|++.+ +.+..+.. +..+++|+.+++++
T Consensus 97 l~~l~l~~-n~i~~i~~~l~~~~~L~~L~ls~-N~I~~i~-~l~~l~~L~~L~l~~-N~i~~~~~-~~~l~~L~~l~l~~ 171 (414)
T KOG0531|consen 97 LEALDLYD-NKIEKIENLLSSLVNLQVLDLSF-NKITKLE-GLSTLTLLKELNLSG-NLISDISG-LESLKSLKLLDLSY 171 (414)
T ss_pred eeeeeccc-cchhhcccchhhhhcchheeccc-ccccccc-chhhccchhhheecc-CcchhccC-CccchhhhcccCCc
Confidence 55555555 44444443122334455555555 4454442 334444455555555 23333332 22244555555554
No 44
>PLN03150 hypothetical protein; Provisional
Probab=97.74 E-value=5e-05 Score=74.91 Aligned_cols=79 Identities=20% Similarity=0.237 Sum_probs=44.0
Q ss_pred cceeecccCCCccccCCCCcCcccccEEEeecCCCcccccccccCCCCCceEEecC-ccC-CccC-CCCCCccceEEecC
Q 043298 139 LREIWIRECGNLVSFPEGGLPCAKLRRLGIYDCERLEALPKGLHNLSSLQELTIGG-ELP-SLEE-DGLPTNLHSLDIWG 215 (357)
Q Consensus 139 L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~-~~~~-~~~~~~L~~L~l~~ 215 (357)
++.|++.++.....+|..+..+++|+.|++++|...+.+|..++.+++|+.|++++ .+. .+|. .+.+++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 45556655444344555555566666666666555555555566666666666665 433 2333 34456666666666
Q ss_pred Cc
Q 043298 216 NM 217 (357)
Q Consensus 216 ~~ 217 (357)
|.
T Consensus 500 N~ 501 (623)
T PLN03150 500 NS 501 (623)
T ss_pred Cc
Confidence 43
No 45
>PLN03150 hypothetical protein; Provisional
Probab=97.73 E-value=7.7e-05 Score=73.59 Aligned_cols=107 Identities=19% Similarity=0.230 Sum_probs=83.1
Q ss_pred ccEEEcccccCccccCccccCccccceeecccCCCccccCCCCcCcccccEEEeecCCCcccccccccCCCCCceEEecC
Q 043298 115 LETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSFPEGGLPCAKLRRLGIYDCERLEALPKGLHNLSSLQELTIGG 194 (357)
Q Consensus 115 L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 194 (357)
++.|+++++.--..+|..++.+++|+.|++++|.....+|..+..+++|+.|++++|+....+|..++++++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 77889988443346788889999999999999766568888888899999999999888888999999999999999988
Q ss_pred -ccC-CccCC--CCCCccceEEecCCcchhh
Q 043298 195 -ELP-SLEED--GLPTNLHSLDIWGNMEIWK 221 (357)
Q Consensus 195 -~~~-~~~~~--~~~~~L~~L~l~~~~~l~~ 221 (357)
.+. .+|.. ....++..+++.+|..+..
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccC
Confidence 544 44431 1234566788888665443
No 46
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.59 E-value=2.2e-06 Score=81.99 Aligned_cols=191 Identities=21% Similarity=0.292 Sum_probs=83.8
Q ss_pred CcccEEEcccccCcccc--CccccCccccceeecccCCCccc--cCCCCcCcccccEEEeecCCCccc--ccccccCCCC
Q 043298 113 TSLETISIYNCENLKIL--PSGLHKLHQLREIWIRECGNLVS--FPEGGLPCAKLRRLGIYDCERLEA--LPKGLHNLSS 186 (357)
Q Consensus 113 ~~L~~L~l~~c~~l~~l--~~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~ 186 (357)
++|+.|++++|..+... ......+++|+.|.+.+|..++. +......+++|++|+++.|..++. +......+++
T Consensus 243 ~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~ 322 (482)
T KOG1947|consen 243 RKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPN 322 (482)
T ss_pred CCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcc
Confidence 44566666555443321 11112255666666555554321 112233455566666666555422 1112223444
Q ss_pred CceEEecCccCCccCCCCCCccceEEecCCcchh-hhhhhcccccCCCCCcceEEeecCCCCCCcCccccccccCCCCCC
Q 043298 187 LQELTIGGELPSLEEDGLPTNLHSLDIWGNMEIW-KSMIERGRGFHRFSSLGHLKIGGCDDDMVSFPLEDKRLGTALPLP 265 (357)
Q Consensus 187 L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~ 265 (357)
++.+.+.. ...++.++.+.+.++.... +.... .....++.++.+.+.. |. .....
T Consensus 323 l~~l~~~~-------~~~c~~l~~~~l~~~~~~~~d~~~~--~~~~~~~~l~~~~l~~-~~-~~~~~------------- 378 (482)
T KOG1947|consen 323 LRELKLLS-------LNGCPSLTDLSLSGLLTLTSDDLAE--LILRSCPKLTDLSLSY-CG-ISDLG------------- 378 (482)
T ss_pred hhhhhhhh-------cCCCccHHHHHHHHhhccCchhHhH--HHHhcCCCcchhhhhh-hh-ccCcc-------------
Confidence 44443322 0002344444444433322 11111 2344555555555555 32 11111
Q ss_pred CCccEEEcCccccC-cccccccccccccCeeccccCCCCcccCCC--CC-ccCCceEEecCChhhHHHh
Q 043298 266 ASLTSLWIEDFPNL-EHLSSSIVDLQNLTSLGLYNCPKLKYFPEK--GL-PSSLLLLWIEGCPLIEEKC 330 (357)
Q Consensus 266 ~~L~~L~l~~c~~l-~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~--~~-~~~L~~L~i~~c~~l~~~~ 330 (357)
..+.+.+|+.+ ..+.........++.|.+..|...+.-... .. ...++.+++.+|+.++...
T Consensus 379 ---~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 444 (482)
T KOG1947|consen 379 ---LELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKS 444 (482)
T ss_pred ---hHHHhcCCcccchHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccchh
Confidence 03445556555 222222233333677777776655442111 11 4556777777777666544
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.58 E-value=1.5e-06 Score=82.90 Aligned_cols=120 Identities=24% Similarity=0.296 Sum_probs=82.6
Q ss_pred ceEEEecCCCCchhchhccCCCCcccEEEcccccCccccCccccCccccceeecccCCCccccCCC-CcCcccccEEEee
Q 043298 91 VKVLDVYGCPKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSFPEG-GLPCAKLRRLGIY 169 (357)
Q Consensus 91 L~~L~l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~ 169 (357)
|...+.++ +.++.+.....+++.++.|+++. +++..+. .+..+++|++||+++ +.+..+|.. ...+ .|+.|.++
T Consensus 166 L~~a~fsy-N~L~~mD~SLqll~ale~LnLsh-Nk~~~v~-~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc-~L~~L~lr 240 (1096)
T KOG1859|consen 166 LATASFSY-NRLVLMDESLQLLPALESLNLSH-NKFTKVD-NLRRLPKLKHLDLSY-NCLRHVPQLSMVGC-KLQLLNLR 240 (1096)
T ss_pred Hhhhhcch-hhHHhHHHHHHHHHHhhhhccch-hhhhhhH-HHHhccccccccccc-chhccccccchhhh-hheeeeec
Confidence 44444443 66666655555566688888888 7777765 677888999999988 567777753 3334 58888888
Q ss_pred cCCCcccccccccCCCCCceEEecC----ccCCccCCCCCCccceEEecCCc
Q 043298 170 DCERLEALPKGLHNLSSLQELTIGG----ELPSLEEDGLPTNLHSLDIWGNM 217 (357)
Q Consensus 170 ~~~~~~~~~~~~~~l~~L~~L~l~~----~~~~~~~~~~~~~L~~L~l~~~~ 217 (357)
+ +-++.+ .++.++++|+.|++++ +...+...+.+..|+.|.+.||+
T Consensus 241 n-N~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 241 N-NALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred c-cHHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 7 445555 4778888899999888 33334335556788888888854
No 48
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.51 E-value=2.6e-06 Score=74.59 Aligned_cols=136 Identities=17% Similarity=0.171 Sum_probs=65.8
Q ss_pred cccccEEEeecCCCccc-----ccccccCCCCCceEEecC-ccCC--c----cCCCCCCccceEEecCCcchhhhhhhcc
Q 043298 160 CAKLRRLGIYDCERLEA-----LPKGLHNLSSLQELTIGG-ELPS--L----EEDGLPTNLHSLDIWGNMEIWKSMIERG 227 (357)
Q Consensus 160 l~~L~~L~l~~~~~~~~-----~~~~~~~l~~L~~L~l~~-~~~~--~----~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 227 (357)
-++|+.+....|. +.. +...+...+.|+.+.+.. ++.. + .....+++|+.|++..|..-........
T Consensus 156 ~~~Lrv~i~~rNr-len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La 234 (382)
T KOG1909|consen 156 KPKLRVFICGRNR-LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA 234 (382)
T ss_pred CcceEEEEeeccc-cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence 3466666665533 222 222444556666666655 2211 1 1134456777777776433222221111
Q ss_pred cccCCCCCcceEEeecCCCCCCcCccccccccCCCCCCCCccEEEcCccccCc-----ccccccccccccCeeccccC
Q 043298 228 RGFHRFSSLGHLKIGGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLE-----HLSSSIVDLQNLTSLGLYNC 300 (357)
Q Consensus 228 ~~l~~~~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~-----~i~~~~~~~~~L~~L~l~~c 300 (357)
..++.++.|++|++++ |.--..=.... +...-...++|+.+.+.++. ++ .+...+...+.|..|.+.+|
T Consensus 235 kaL~s~~~L~El~l~d-cll~~~Ga~a~--~~al~~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 235 KALSSWPHLRELNLGD-CLLENEGAIAF--VDALKESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred HHhcccchheeecccc-cccccccHHHH--HHHHhccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 2456667778888887 64211100000 00001235677777777743 22 22223344677777777774
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.48 E-value=2.3e-05 Score=73.57 Aligned_cols=206 Identities=19% Similarity=0.276 Sum_probs=111.1
Q ss_pred ceEEEecCCCCchhchhccCCCCcccEEEcccccCccccCccccCccccceeecccCCCccccCCCCcCcccccEEEeec
Q 043298 91 VKVLDVYGCPKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSFPEGGLPCAKLRRLGIYD 170 (357)
Q Consensus 91 L~~L~l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~ 170 (357)
++.++++. +.++.+....+...+|+.|++.+ +.++.+...+..+++|+.|++++ +.++.+.. +..++.|+.|++.+
T Consensus 74 l~~l~l~~-n~i~~~~~~l~~~~~l~~l~l~~-n~i~~i~~~l~~~~~L~~L~ls~-N~I~~i~~-l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 74 LKELNLRQ-NLIAKILNHLSKLKSLEALDLYD-NKIEKIENLLSSLVNLQVLDLSF-NKITKLEG-LSTLTLLKELNLSG 149 (414)
T ss_pred HHhhccch-hhhhhhhcccccccceeeeeccc-cchhhcccchhhhhcchheeccc-cccccccc-hhhccchhhheecc
Confidence 55555555 45554222223345577777776 66766654356677777777777 45555532 33445577777776
Q ss_pred CCCcccccccccCCCCCceEEecC-ccCCccC--CCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeecCCCC
Q 043298 171 CERLEALPKGLHNLSSLQELTIGG-ELPSLEE--DGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDD 247 (357)
Q Consensus 171 ~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~ 247 (357)
|. +..+ ..+..++.|+.+++++ .+..+.. ......++.+++.++ .+..+. .+..+..+..+++.. +.
T Consensus 150 N~-i~~~-~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n-~i~~i~-----~~~~~~~l~~~~l~~--n~ 219 (414)
T KOG0531|consen 150 NL-ISDI-SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGN-SIREIE-----GLDLLKKLVLLSLLD--NK 219 (414)
T ss_pred Cc-chhc-cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCC-chhccc-----chHHHHHHHHhhccc--cc
Confidence 33 4443 2455566777777766 5555544 244566666666663 222222 122333333334444 33
Q ss_pred CCcCccccccccCCCCCCC--CccEEEcCccccCcccccccccccccCeeccccCCCCcccCCCCCccCCceEEe
Q 043298 248 MVSFPLEDKRLGTALPLPA--SLTSLWIEDFPNLEHLSSSIVDLQNLTSLGLYNCPKLKYFPEKGLPSSLLLLWI 320 (357)
Q Consensus 248 l~~~~~~~~~~~~~~~~~~--~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i 320 (357)
+..+.+.. ... .|+.+++.+ +.+..++..+..+..+..+++.+ +++..+........+..++.
T Consensus 220 i~~~~~l~--------~~~~~~L~~l~l~~-n~i~~~~~~~~~~~~l~~l~~~~-n~~~~~~~~~~~~~~~~~~~ 284 (414)
T KOG0531|consen 220 ISKLEGLN--------ELVMLHLRELYLSG-NRISRSPEGLENLKNLPVLDLSS-NRISNLEGLERLPKLSELWL 284 (414)
T ss_pred ceeccCcc--------cchhHHHHHHhccc-Cccccccccccccccccccchhh-ccccccccccccchHHHhcc
Confidence 33332211 122 278888888 55666545557778888888877 55555444222333444433
No 50
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.44 E-value=2.2e-05 Score=68.92 Aligned_cols=186 Identities=13% Similarity=0.032 Sum_probs=103.5
Q ss_pred cCccccceeecccCCCccccCC----CCcCcccccEEEeecCCCccc-------------ccccccCCCCCceEEecC-c
Q 043298 134 HKLHQLREIWIRECGNLVSFPE----GGLPCAKLRRLGIYDCERLEA-------------LPKGLHNLSSLQELTIGG-E 195 (357)
Q Consensus 134 ~~l~~L~~L~l~~~~~l~~~~~----~~~~l~~L~~L~l~~~~~~~~-------------~~~~~~~l~~L~~L~l~~-~ 195 (357)
..+++|+.+++++|-.....+. .+..+..|++|.+.+|..-.. ...-++.-+.|+.+..++ .
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr 168 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR 168 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence 3456777777777543332222 233466777777776653211 112334457788888877 3
Q ss_pred cCCccC------CCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeecCCCCCCcCccccccccCCCCCCCCcc
Q 043298 196 LPSLEE------DGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDMVSFPLEDKRLGTALPLPASLT 269 (357)
Q Consensus 196 ~~~~~~------~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~ 269 (357)
+...+. ....+.|+.+.+..+..-..........+..+++|+.|++.+ +.+..-... -+++.+..+++|+
T Consensus 169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~D--Ntft~egs~--~LakaL~s~~~L~ 244 (382)
T KOG1909|consen 169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRD--NTFTLEGSV--ALAKALSSWPHLR 244 (382)
T ss_pred cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeeccc--chhhhHHHH--HHHHHhcccchhe
Confidence 332221 334478888888874321111100013567889999999988 333322111 1345556777899
Q ss_pred EEEcCccccCc----cccccc-ccccccCeeccccCCCCccc-----C-CCCCccCCceEEecCCh
Q 043298 270 SLWIEDFPNLE----HLSSSI-VDLQNLTSLGLYNCPKLKYF-----P-EKGLPSSLLLLWIEGCP 324 (357)
Q Consensus 270 ~L~l~~c~~l~----~i~~~~-~~~~~L~~L~l~~c~~l~~l-----~-~~~~~~~L~~L~i~~c~ 324 (357)
.|.+++|..=. .+...+ ...|+|+.+.+.+| .++.= . ...-.+.|..|.+++|.
T Consensus 245 El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 245 ELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred eecccccccccccHHHHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 99999884211 111111 34788888888884 34330 0 01125788888888764
No 51
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.42 E-value=7.4e-06 Score=78.41 Aligned_cols=137 Identities=27% Similarity=0.346 Sum_probs=82.1
Q ss_pred ccccceeecccccccccccccccccccCCCCCCcCCccEEEEecC-CCccccccCCCCCCcccceecccCCCcceEEEec
Q 043298 19 PSSLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNC-DSLTCIFSKYELPATLESLEVGNLPSSVKVLDVY 97 (357)
Q Consensus 19 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c-~~l~~~~~~~~~~~~L~~L~l~~l~~~L~~L~l~ 97 (357)
.++|+.|.+.+|..+...... ++..... +|+.|++++| ...... +.. .. . ....+++ |+.|+++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~-----~~~~~~~--~L~~L~l~~~~~~~~~~-~~~-~~-~----~~~~~~~-L~~l~l~ 251 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLD-----ALALKCP--NLEELDLSGCCLLITLS-PLL-LL-L----LLSICRK-LKSLDLS 251 (482)
T ss_pred CchhhHhhhcccccCChhhHH-----HHHhhCc--hhheecccCcccccccc-hhH-hh-h----hhhhcCC-cCccchh
Confidence 688899999888777652211 1345666 8999999883 333222 211 00 0 1124556 8889999
Q ss_pred CCCCchhchhc--cCCCCcccEEEcccccCccc--cCccccCccccceeecccCCCccc--cCCCCcCcccccEEEeec
Q 043298 98 GCPKLESIAER--LDNNTSLETISIYNCENLKI--LPSGLHKLHQLREIWIRECGNLVS--FPEGGLPCAKLRRLGIYD 170 (357)
Q Consensus 98 ~c~~~~~~~~~--~~~~~~L~~L~l~~c~~l~~--l~~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~l~~L~~L~l~~ 170 (357)
+|..+++.... ...+++|+.|.+.+|..++. +......+++|++|++++|..+.+ +......+++++.+.+..
T Consensus 252 ~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 252 GCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred hhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 88766654322 12355799999888876542 333345688899999998877632 222233355666654433
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.99 E-value=0.00034 Score=69.31 Aligned_cols=36 Identities=14% Similarity=0.252 Sum_probs=17.0
Q ss_pred CCCCccEEEcCccccCc-ccc-cccccccccCeeccccC
Q 043298 264 LPASLTSLWIEDFPNLE-HLS-SSIVDLQNLTSLGLYNC 300 (357)
Q Consensus 264 ~~~~L~~L~l~~c~~l~-~i~-~~~~~~~~L~~L~l~~c 300 (357)
.+|.|+.||.++ ..+. .+- ..+...++|+.+..-+|
T Consensus 248 ~LpeLrfLDcSg-Tdi~~~~le~ll~sH~~L~~i~~~~~ 285 (699)
T KOG3665|consen 248 VLPELRFLDCSG-TDINEEILEELLNSHPNLQQIAALDC 285 (699)
T ss_pred cCccccEEecCC-cchhHHHHHHHHHhCccHhhhhhhhh
Confidence 356777777766 3322 111 11234455555544443
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.89 E-value=0.0009 Score=40.89 Aligned_cols=38 Identities=24% Similarity=0.378 Sum_probs=19.5
Q ss_pred CccEEEcCccccCcccccccccccccCeeccccCCCCccc
Q 043298 267 SLTSLWIEDFPNLEHLSSSIVDLQNLTSLGLYNCPKLKYF 306 (357)
Q Consensus 267 ~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l 306 (357)
+|++|++++ +.++.+|..+..+++|++|+++++ .++.+
T Consensus 2 ~L~~L~l~~-N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSN-NQITDLPPELSNLPNLETLNLSNN-PISDI 39 (44)
T ss_dssp T-SEEEETS-SS-SSHGGHGTTCTTSSEEEETSS-CCSBE
T ss_pred cceEEEccC-CCCcccCchHhCCCCCCEEEecCC-CCCCC
Confidence 455566655 355555544555666666666553 34443
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.74 E-value=0.0023 Score=39.12 Aligned_cols=31 Identities=26% Similarity=0.459 Sum_probs=13.4
Q ss_pred ccEEEcccccCccccCccccCccccceeeccc
Q 043298 115 LETISIYNCENLKILPSGLHKLHQLREIWIRE 146 (357)
Q Consensus 115 L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~ 146 (357)
|++|++++ +.++.+|..++++++|+.|++++
T Consensus 3 L~~L~l~~-N~i~~l~~~l~~l~~L~~L~l~~ 33 (44)
T PF12799_consen 3 LEELDLSN-NQITDLPPELSNLPNLETLNLSN 33 (44)
T ss_dssp -SEEEETS-SS-SSHGGHGTTCTTSSEEEETS
T ss_pred ceEEEccC-CCCcccCchHhCCCCCCEEEecC
Confidence 44444444 34444443344444444444444
No 55
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.44 E-value=0.0035 Score=54.45 Aligned_cols=179 Identities=15% Similarity=0.136 Sum_probs=77.7
Q ss_pred CCcccEEEcccccCccc---cCccccCccccceeecccCCCccccCCCCcCcccccEEEeecCCCcc-cccccccCCCCC
Q 043298 112 NTSLETISIYNCENLKI---LPSGLHKLHQLREIWIRECGNLVSFPEGGLPCAKLRRLGIYDCERLE-ALPKGLHNLSSL 187 (357)
Q Consensus 112 ~~~L~~L~l~~c~~l~~---l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L 187 (357)
...++++++.+ +.+.. +.....++|.|+.|.++.++.-..+-....+..+|+.|.+.+....- .....+..+|.+
T Consensus 70 ~~~v~elDL~~-N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 70 VTDVKELDLTG-NLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred hhhhhhhhccc-chhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 34466666666 44442 22223456677777776544322222222344567776665533211 111233455555
Q ss_pred ceEEecC-ccCCccC-----CCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeecCCCCCCcCccccccccCC
Q 043298 188 QELTIGG-ELPSLEE-----DGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDMVSFPLEDKRLGTA 261 (357)
Q Consensus 188 ~~L~l~~-~~~~~~~-----~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~~~~~~~~~~~~ 261 (357)
+.|+++. ....+-. ...-+.+++++..+|......... .....+|++..+.+.. |. +.....+. .
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~--~l~r~Fpnv~sv~v~e-~P-lK~~s~ek-----~ 219 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKN--KLSRIFPNVNSVFVCE-GP-LKTESSEK-----G 219 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHH--hHHhhcccchheeeec-Cc-ccchhhcc-----c
Confidence 5555544 1111110 111235555655555433211111 1113446666666655 32 11111110 0
Q ss_pred CCCCCCccEEEcCccccCcccc--cccccccccCeeccccCC
Q 043298 262 LPLPASLTSLWIEDFPNLEHLS--SSIVDLQNLTSLGLYNCP 301 (357)
Q Consensus 262 ~~~~~~L~~L~l~~c~~l~~i~--~~~~~~~~L~~L~l~~c~ 301 (357)
....+.+--|.+.. +++.++. ..+.++++|.-|.+.+.+
T Consensus 220 se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 220 SEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENP 260 (418)
T ss_pred CCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCc
Confidence 12334444455544 3444433 123455666666665544
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.43 E-value=0.0014 Score=64.97 Aligned_cols=102 Identities=28% Similarity=0.310 Sum_probs=63.4
Q ss_pred ccccEEEeecCCCcc-cccccc-cCCCCCceEEecC-ccC--CccC-CCCCCccceEEecCCcchhhhhhhcccccCCCC
Q 043298 161 AKLRRLGIYDCERLE-ALPKGL-HNLSSLQELTIGG-ELP--SLEE-DGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFS 234 (357)
Q Consensus 161 ~~L~~L~l~~~~~~~-~~~~~~-~~l~~L~~L~l~~-~~~--~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~ 234 (357)
.+|++|++++..... ..|..+ ..+|+|++|.+.+ .+. .+.. ...+|+|..||+++ .+++++. +++.++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~-TnI~nl~-----GIS~Lk 195 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISG-TNISNLS-----GISRLK 195 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCC-CCccCcH-----HHhccc
Confidence 589999998744332 222333 3578999998888 221 1111 34568888888888 4455443 457788
Q ss_pred CcceEEeecCCCCCCcCccccccccCCCCCCCCccEEEcCc
Q 043298 235 SLGHLKIGGCDDDMVSFPLEDKRLGTALPLPASLTSLWIED 275 (357)
Q Consensus 235 ~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 275 (357)
+|+.|.+.+ -.++...... .+..+++|+.||++.
T Consensus 196 nLq~L~mrn--Le~e~~~~l~-----~LF~L~~L~vLDIS~ 229 (699)
T KOG3665|consen 196 NLQVLSMRN--LEFESYQDLI-----DLFNLKKLRVLDISR 229 (699)
T ss_pred cHHHHhccC--CCCCchhhHH-----HHhcccCCCeeeccc
Confidence 888888877 4444333211 123677888888886
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.40 E-value=0.0086 Score=49.10 Aligned_cols=12 Identities=25% Similarity=0.152 Sum_probs=7.6
Q ss_pred CCCCccEEEcCc
Q 043298 264 LPASLTSLWIED 275 (357)
Q Consensus 264 ~~~~L~~L~l~~ 275 (357)
..++|+.||+.+
T Consensus 138 klp~l~~LDF~k 149 (233)
T KOG1644|consen 138 KLPSLRTLDFQK 149 (233)
T ss_pred ecCcceEeehhh
Confidence 456666676665
No 58
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.39 E-value=0.00018 Score=69.24 Aligned_cols=121 Identities=26% Similarity=0.298 Sum_probs=84.0
Q ss_pred CCceEEecC-ccCCccC-CCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeecCCCCCCcCccccccccCCCC
Q 043298 186 SLQELTIGG-ELPSLEE-DGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDMVSFPLEDKRLGTALP 263 (357)
Q Consensus 186 ~L~~L~l~~-~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~ 263 (357)
.|...+.++ .+..+.. ..+++.++.|++++ ++++.+. .+..++.|++|||+. +.+..+|.-.. .
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLsh-Nk~~~v~-----~Lr~l~~LkhLDlsy--N~L~~vp~l~~------~ 230 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSH-NKFTKVD-----NLRRLPKLKHLDLSY--NCLRHVPQLSM------V 230 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccch-hhhhhhH-----HHHhccccccccccc--chhccccccch------h
Confidence 445555555 4444443 45678999999999 5666665 368899999999999 55666654331 1
Q ss_pred CCCCccEEEcCccccCcccccccccccccCeeccccCCCCcccCC---CCCccCCceEEecCCh
Q 043298 264 LPASLTSLWIEDFPNLEHLSSSIVDLQNLTSLGLYNCPKLKYFPE---KGLPSSLLLLWIEGCP 324 (357)
Q Consensus 264 ~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~---~~~~~~L~~L~i~~c~ 324 (357)
. -.|+.|.+++ +.++.+. ++.++.+|..||+++ +-+..... -..+.+|.+|++.+.|
T Consensus 231 g-c~L~~L~lrn-N~l~tL~-gie~LksL~~LDlsy-Nll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 231 G-CKLQLLNLRN-NALTTLR-GIENLKSLYGLDLSY-NLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred h-hhheeeeecc-cHHHhhh-hHHhhhhhhccchhH-hhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 2 2499999998 7788776 568899999999998 44544333 1225688888888865
No 59
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.33 E-value=0.0002 Score=61.24 Aligned_cols=97 Identities=23% Similarity=0.306 Sum_probs=70.4
Q ss_pred CccEEEEecCCCccccccCCCCCCcccceecccCCCcceEEEecCCCCchhchhccCCCCcccEEEcccccCccccCc--
Q 043298 54 LLEELFVFNCDSLTCIFSKYELPATLESLEVGNLPSSVKVLDVYGCPKLESIAERLDNNTSLETISIYNCENLKILPS-- 131 (357)
Q Consensus 54 ~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~l~~~L~~L~l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-- 131 (357)
+.++|+.-||. +.++ . +-. .||. |+.|.|+. ++|+.+.+.. .+..|++|.|.. +.|.++.+
T Consensus 20 ~vkKLNcwg~~-L~DI-s-------ic~----kMp~-lEVLsLSv-NkIssL~pl~-rCtrLkElYLRk-N~I~sldEL~ 82 (388)
T KOG2123|consen 20 NVKKLNCWGCG-LDDI-S-------ICE----KMPL-LEVLSLSV-NKISSLAPLQ-RCTRLKELYLRK-NCIESLDELE 82 (388)
T ss_pred HhhhhcccCCC-ccHH-H-------HHH----hccc-ceeEEeec-cccccchhHH-HHHHHHHHHHHh-cccccHHHHH
Confidence 67777777764 5555 1 111 6788 99999998 8888887766 567799999988 77776643
Q ss_pred cccCccccceeecccCCCccccCC-----CCcCcccccEEE
Q 043298 132 GLHKLHQLREIWIRECGNLVSFPE-----GGLPCAKLRRLG 167 (357)
Q Consensus 132 ~~~~l~~L~~L~l~~~~~l~~~~~-----~~~~l~~L~~L~ 167 (357)
.+.++++|+.|++..|+....-+. .+..+|||+.|+
T Consensus 83 YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 83 YLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 457899999999988876654433 233478888886
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.93 E-value=0.017 Score=47.49 Aligned_cols=98 Identities=17% Similarity=0.225 Sum_probs=50.7
Q ss_pred cccEEEcccccCccccCccccCccccceeecccCCCccccCCCCc-CcccccEEEeecCCCccccc--ccccCCCCCceE
Q 043298 114 SLETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSFPEGGL-PCAKLRRLGIYDCERLEALP--KGLHNLSSLQEL 190 (357)
Q Consensus 114 ~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~-~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L 190 (357)
+...+++++ +.+..++ .+..++.|.+|.+.+ +.+.++...+. .+++|+.|.+.+|+ +..+. .-+..+|+|++|
T Consensus 43 ~~d~iDLtd-Ndl~~l~-~lp~l~rL~tLll~n-NrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 43 QFDAIDLTD-NDLRKLD-NLPHLPRLHTLLLNN-NRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccceecccc-cchhhcc-cCCCccccceEEecC-CcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCcccee
Confidence 355666666 4554432 455666777777766 45555544332 24567777776633 33332 134455666666
Q ss_pred EecC-ccCCccC-----CCCCCccceEEecC
Q 043298 191 TIGG-ELPSLEE-----DGLPTNLHSLDIWG 215 (357)
Q Consensus 191 ~l~~-~~~~~~~-----~~~~~~L~~L~l~~ 215 (357)
.+-+ .++.... ....|+|+.||+.+
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhh
Confidence 6555 3322221 22245555555554
No 61
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.65 E-value=0.00047 Score=52.83 Aligned_cols=77 Identities=22% Similarity=0.285 Sum_probs=39.4
Q ss_pred ccEEEcccccCccccCcccc-CccccceeecccCCCccccCCCCcCcccccEEEeecCCCcccccccccCCCCCceEEec
Q 043298 115 LETISIYNCENLKILPSGLH-KLHQLREIWIRECGNLVSFPEGGLPCAKLRRLGIYDCERLEALPKGLHNLSSLQELTIG 193 (357)
Q Consensus 115 L~~L~l~~c~~l~~l~~~~~-~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 193 (357)
|+..++++ +.++.+|+.+. .++.++.+.+++ +.+.++|.++..++.|+.|+++.|+ +...|..+..+.+|-.|+..
T Consensus 55 l~~i~ls~-N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 55 LTKISLSD-NGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred EEEEeccc-chhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhHHHhcCC
Confidence 45555555 55555554443 234555555555 4555555555555666666665533 33334444444455555444
Q ss_pred C
Q 043298 194 G 194 (357)
Q Consensus 194 ~ 194 (357)
+
T Consensus 132 ~ 132 (177)
T KOG4579|consen 132 E 132 (177)
T ss_pred C
Confidence 3
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.47 E-value=0.00077 Score=57.81 Aligned_cols=98 Identities=24% Similarity=0.307 Sum_probs=72.0
Q ss_pred ceEEEecCCCCchhchhccCCCCcccEEEcccccCccccCccccCccccceeecccCCCccccCC--CCcCcccccEEEe
Q 043298 91 VKVLDVYGCPKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSFPE--GGLPCAKLRRLGI 168 (357)
Q Consensus 91 L~~L~l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~l~~L~~L~l 168 (357)
.+.|+..+| .+.++..-. .++.|+.|.|+- +.++++. .+..|++|++|++.. +.+.++.+ .+.++|+|+.|.+
T Consensus 21 vkKLNcwg~-~L~DIsic~-kMp~lEVLsLSv-NkIssL~-pl~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 21 VKKLNCWGC-GLDDISICE-KMPLLEVLSLSV-NKISSLA-PLQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred hhhhcccCC-CccHHHHHH-hcccceeEEeec-cccccch-hHHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHhh
Confidence 677888886 566665544 566699999987 7888774 678899999999988 56666653 3567899999999
Q ss_pred ecCCCcccccc-----cccCCCCCceEEec
Q 043298 169 YDCERLEALPK-----GLHNLSSLQELTIG 193 (357)
Q Consensus 169 ~~~~~~~~~~~-----~~~~l~~L~~L~l~ 193 (357)
..|+..+.-+. .+.-+|+|++|+=.
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv 125 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLDNV 125 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhccCc
Confidence 98776655433 45667888888643
No 63
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.02 E-value=0.011 Score=51.56 Aligned_cols=79 Identities=23% Similarity=0.201 Sum_probs=34.6
Q ss_pred ceEEEecCCCCchhchhc---cCCCCcccEEEcccccCccccCccc-cCccccceeecccCCCcc-ccCCCCcCcccccE
Q 043298 91 VKVLDVYGCPKLESIAER---LDNNTSLETISIYNCENLKILPSGL-HKLHQLREIWIRECGNLV-SFPEGGLPCAKLRR 165 (357)
Q Consensus 91 L~~L~l~~c~~~~~~~~~---~~~~~~L~~L~l~~c~~l~~l~~~~-~~l~~L~~L~l~~~~~l~-~~~~~~~~l~~L~~ 165 (357)
++++++.+ +.+..+... ...++.|+.|+++. +.+.+.-... ....+|+.|.+.+...-. ..-.....+|.+++
T Consensus 73 v~elDL~~-N~iSdWseI~~ile~lP~l~~LNls~-N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 73 VKELDLTG-NLISDWSEIGAILEQLPALTTLNLSC-NSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhccc-chhccHHHHHHHHhcCccceEeeccC-CcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 55666666 455443222 12233366666654 4444322222 234456666664421110 11112333455566
Q ss_pred EEeecC
Q 043298 166 LGIYDC 171 (357)
Q Consensus 166 L~l~~~ 171 (357)
++++.|
T Consensus 151 lHmS~N 156 (418)
T KOG2982|consen 151 LHMSDN 156 (418)
T ss_pred hhhccc
Confidence 655554
No 64
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=94.32 E-value=0.0052 Score=47.24 Aligned_cols=77 Identities=17% Similarity=0.219 Sum_probs=48.4
Q ss_pred ceEEEecCCCCchhchhcc-CCCCcccEEEcccccCccccCccccCccccceeecccCCCccccCCCCcCcccccEEEee
Q 043298 91 VKVLDVYGCPKLESIAERL-DNNTSLETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSFPEGGLPCAKLRRLGIY 169 (357)
Q Consensus 91 L~~L~l~~c~~~~~~~~~~-~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~ 169 (357)
|...++++ +.++.+|+.. ..++.++.+++.+ +.+..+|..+..++.|+.+.++.+ .+...|.-+.++.++-.|+..
T Consensus 55 l~~i~ls~-N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 55 LTKISLSD-NGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred EEEEeccc-chhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhcccccC-ccccchHHHHHHHhHHHhcCC
Confidence 66667776 6667666654 2223367777777 677777777777777777777763 445555544445556555554
Q ss_pred c
Q 043298 170 D 170 (357)
Q Consensus 170 ~ 170 (357)
+
T Consensus 132 ~ 132 (177)
T KOG4579|consen 132 E 132 (177)
T ss_pred C
Confidence 4
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.21 E-value=0.26 Score=37.58 Aligned_cols=10 Identities=20% Similarity=0.660 Sum_probs=3.6
Q ss_pred cccccEEEee
Q 043298 160 CAKLRRLGIY 169 (357)
Q Consensus 160 l~~L~~L~l~ 169 (357)
+++|+.+.+.
T Consensus 34 ~~~l~~i~~~ 43 (129)
T PF13306_consen 34 CTSLKSINFP 43 (129)
T ss_dssp -TT-SEEEES
T ss_pred cccccccccc
Confidence 3344444443
No 66
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.13 E-value=0.0096 Score=48.82 Aligned_cols=77 Identities=22% Similarity=0.309 Sum_probs=39.8
Q ss_pred cccEEEeecCCCcccccccccCCCCCceEEecC-------ccCCccCCCCCCccceEEecCCcchhhhhhhcccccCCCC
Q 043298 162 KLRRLGIYDCERLEALPKGLHNLSSLQELTIGG-------ELPSLEEDGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFS 234 (357)
Q Consensus 162 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-------~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~ 234 (357)
.++.++-+++....+--+.+.++++++.|.+.+ .++.+. +..++|+.|++++|..+++.... .+..++
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~--~~~~~L~~L~lsgC~rIT~~GL~---~L~~lk 176 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLG--GLAPSLQDLDLSGCPRITDGGLA---CLLKLK 176 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhc--ccccchheeeccCCCeechhHHH---HHHHhh
Confidence 455555554333332223444555555555544 122221 23466777777777766666554 455666
Q ss_pred CcceEEeec
Q 043298 235 SLGHLKIGG 243 (357)
Q Consensus 235 ~L~~L~l~~ 243 (357)
+|+.|.+.+
T Consensus 177 nLr~L~l~~ 185 (221)
T KOG3864|consen 177 NLRRLHLYD 185 (221)
T ss_pred hhHHHHhcC
Confidence 666666655
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.94 E-value=0.54 Score=35.80 Aligned_cols=80 Identities=15% Similarity=0.232 Sum_probs=35.9
Q ss_pred CcCcccccEEEeecCCCccccc-ccccCCCCCceEEecCccCCccC--CCCCCccceEEecCCcchhhhhhhcccccCCC
Q 043298 157 GLPCAKLRRLGIYDCERLEALP-KGLHNLSSLQELTIGGELPSLEE--DGLPTNLHSLDIWGNMEIWKSMIERGRGFHRF 233 (357)
Q Consensus 157 ~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~ 233 (357)
+..+++|+.+.+.. .+..++ ..|..+++|+.+.+...+..++. ...++.++.+.+.. .+..+.. ..+..+
T Consensus 8 F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~---~~F~~~ 80 (129)
T PF13306_consen 8 FYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPNNLTSIGDNAFSNCKSLESITFPN--NLKSIGD---NAFSNC 80 (129)
T ss_dssp TTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESSTTSCE-TTTTTT-TT-EEEEETS--TT-EE-T---TTTTT-
T ss_pred HhCCCCCCEEEECC--CeeEeChhhcccccccccccccccccccceeeeecccccccccccc--ccccccc---cccccc
Confidence 45566777777653 344443 35667777777777654443333 23344566666643 2222222 245556
Q ss_pred CCcceEEeec
Q 043298 234 SSLGHLKIGG 243 (357)
Q Consensus 234 ~~L~~L~l~~ 243 (357)
++|+.+.+..
T Consensus 81 ~~l~~i~~~~ 90 (129)
T PF13306_consen 81 TNLKNIDIPS 90 (129)
T ss_dssp TTECEEEETT
T ss_pred ccccccccCc
Confidence 6666666644
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.86 E-value=0.026 Score=48.20 Aligned_cols=36 Identities=25% Similarity=0.151 Sum_probs=16.0
Q ss_pred CCccceEEecCCcc--hhhhhhhcccccCCCCCcceEEeec
Q 043298 205 PTNLHSLDIWGNME--IWKSMIERGRGFHRFSSLGHLKIGG 243 (357)
Q Consensus 205 ~~~L~~L~l~~~~~--l~~~~~~~~~~l~~~~~L~~L~l~~ 243 (357)
+.+|..|++..|.. +.+... ..+.-+++|+.|+-..
T Consensus 115 l~nL~~Ldl~n~~~~~l~dyre---~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 115 LENLKSLDLFNCSVTNLDDYRE---KVFLLLPSLKYLDGCD 152 (260)
T ss_pred hcchhhhhcccCCccccccHHH---HHHHHhhhhccccccc
Confidence 34455555555432 222222 1344455666555443
No 69
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.42 E-value=0.043 Score=25.83 Aligned_cols=16 Identities=19% Similarity=0.468 Sum_probs=6.4
Q ss_pred ccceeeccccccccccc
Q 043298 21 SLKNLQIRDCYNIRTLT 37 (357)
Q Consensus 21 ~L~~L~l~~~~~l~~~~ 37 (357)
+|++|++++|. ++++|
T Consensus 2 ~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp T-SEEEETSS---SSE-
T ss_pred ccCEEECCCCC-CCCCc
Confidence 45555555555 44443
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.82 E-value=0.069 Score=27.00 Aligned_cols=20 Identities=20% Similarity=0.413 Sum_probs=11.3
Q ss_pred cccEEEeecCCCccccccccc
Q 043298 162 KLRRLGIYDCERLEALPKGLH 182 (357)
Q Consensus 162 ~L~~L~l~~~~~~~~~~~~~~ 182 (357)
+|++|++++| .++.+|..|+
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSS-EESEEGTTTT
T ss_pred CccEEECCCC-cCEeCChhhc
Confidence 3566666665 4445655544
No 71
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.30 E-value=0.035 Score=45.60 Aligned_cols=87 Identities=21% Similarity=0.336 Sum_probs=54.6
Q ss_pred ccceEEecCCcchhhhhhhcccccCCCCCcceEEeecCCCCCCcCccccccccCCCCCCCCccEEEcCccccCcccc-cc
Q 043298 207 NLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLEHLS-SS 285 (357)
Q Consensus 207 ~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~-~~ 285 (357)
.++.++-+++.-...... .+..++.++.|.+.+ |..+.+..-+. + -...++|+.|++++|+.+++-. .+
T Consensus 102 ~IeaVDAsds~I~~eGle----~L~~l~~i~~l~l~~-ck~~dD~~L~~--l---~~~~~~L~~L~lsgC~rIT~~GL~~ 171 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLE----HLRDLRSIKSLSLAN-CKYFDDWCLER--L---GGLAPSLQDLDLSGCPRITDGGLAC 171 (221)
T ss_pred eEEEEecCCchHHHHHHH----HHhccchhhhheecc-ccchhhHHHHH--h---cccccchheeeccCCCeechhHHHH
Confidence 466777777544443332 467778888888888 77665432211 1 1245788888888888777643 34
Q ss_pred cccccccCeeccccCCCC
Q 043298 286 IVDLQNLTSLGLYNCPKL 303 (357)
Q Consensus 286 ~~~~~~L~~L~l~~c~~l 303 (357)
+..+++|+.|.+.+.+.+
T Consensus 172 L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 172 LLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred HHHhhhhHHHHhcCchhh
Confidence 566777777777765443
No 72
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=91.86 E-value=0.14 Score=44.16 Aligned_cols=178 Identities=17% Similarity=0.106 Sum_probs=90.8
Q ss_pred ceEEEecCCCCchhch----hccCCCCcccEEEccccc--Cc-ccc-------CccccCccccceeecccCCCccccCCC
Q 043298 91 VKVLDVYGCPKLESIA----ERLDNNTSLETISIYNCE--NL-KIL-------PSGLHKLHQLREIWIRECGNLVSFPEG 156 (357)
Q Consensus 91 L~~L~l~~c~~~~~~~----~~~~~~~~L~~L~l~~c~--~l-~~l-------~~~~~~l~~L~~L~l~~~~~l~~~~~~ 156 (357)
+.+++++++..-++-. ..+..-++|+..++++.- +. +.+ ...+-.||+|+..+++.+......|+.
T Consensus 32 ~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~ 111 (388)
T COG5238 32 LVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEE 111 (388)
T ss_pred eeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchH
Confidence 7888888843322221 111223456666665410 00 011 223445788888888886554444432
Q ss_pred ----CcCcccccEEEeecCCCccccc--------------ccccCCCCCceEEecC-ccCCccC------CCCCCccceE
Q 043298 157 ----GLPCAKLRRLGIYDCERLEALP--------------KGLHNLSSLQELTIGG-ELPSLEE------DGLPTNLHSL 211 (357)
Q Consensus 157 ----~~~l~~L~~L~l~~~~~~~~~~--------------~~~~~l~~L~~L~l~~-~~~~~~~------~~~~~~L~~L 211 (357)
+..-+.|.+|.+.+|.. +.+. .-...-|.|+....+. .+...+. ...-.+|+.+
T Consensus 112 L~d~is~~t~l~HL~l~NnGl-Gp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~v 190 (388)
T COG5238 112 LGDLISSSTDLVHLKLNNNGL-GPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEV 190 (388)
T ss_pred HHHHHhcCCCceeEEeecCCC-CccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeE
Confidence 33457888888877543 2111 1123446777777766 3333221 1111467777
Q ss_pred EecCCcc----hhhhhhhcccccCCCCCcceEEeecCCCCCCcCccccccccCCCCCCCCccEEEcCcc
Q 043298 212 DIWGNME----IWKSMIERGRGFHRFSSLGHLKIGGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDF 276 (357)
Q Consensus 212 ~l~~~~~----l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c 276 (357)
.+..|.. ++.... ..+..+.+|+.|++.+ +.++...... ++.+++..+.|+.|.+.+|
T Consensus 191 ki~qNgIrpegv~~L~~---~gl~y~~~LevLDlqD--Ntft~~gS~~--La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 191 KIQQNGIRPEGVTMLAF---LGLFYSHSLEVLDLQD--NTFTLEGSRY--LADALCEWNLLRELRLNDC 252 (388)
T ss_pred EeeecCcCcchhHHHHH---HHHHHhCcceeeeccc--cchhhhhHHH--HHHHhcccchhhhccccch
Confidence 7766321 111111 2345667888888877 3333222211 2334445566788888777
No 73
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=89.89 E-value=0.061 Score=46.38 Aligned_cols=148 Identities=19% Similarity=0.153 Sum_probs=85.8
Q ss_pred ccccccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCCCCCCcccceecc----cCCCcce
Q 043298 17 QLPSSLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKYELPATLESLEVG----NLPSSVK 92 (357)
Q Consensus 17 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~----~l~~~L~ 92 (357)
..+|+|+..++|.+..-...|...+ -++.+.+ .|.+|++.+|. +..+ .....-..|.+|-.. .-|. |+
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~---d~is~~t--~l~HL~l~NnG-lGp~-aG~rigkal~~la~nKKaa~kp~-Le 160 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELG---DLISSST--DLVHLKLNNNG-LGPI-AGGRIGKALFHLAYNKKAADKPK-LE 160 (388)
T ss_pred hcCCcceeeeccccccCcccchHHH---HHHhcCC--CceeEEeecCC-CCcc-chhHHHHHHHHHHHHhhhccCCC-ce
Confidence 3479999999998764333332210 0355666 89999999864 5544 333333344444333 5567 88
Q ss_pred EEEecCCCCchhchhc-----cCCCCcccEEEcccccCcccc------CccccCccccceeecccCCCcc----ccCCCC
Q 043298 93 VLDVYGCPKLESIAER-----LDNNTSLETISIYNCENLKIL------PSGLHKLHQLREIWIRECGNLV----SFPEGG 157 (357)
Q Consensus 93 ~L~l~~c~~~~~~~~~-----~~~~~~L~~L~l~~c~~l~~l------~~~~~~l~~L~~L~l~~~~~l~----~~~~~~ 157 (357)
...... +++...+.. ...-..|+.+.+.. +.|+.- ...+..+++|+.|++..+.... .+....
T Consensus 161 ~vicgr-NRlengs~~~~a~~l~sh~~lk~vki~q-NgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al 238 (388)
T COG5238 161 VVICGR-NRLENGSKELSAALLESHENLKEVKIQQ-NGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADAL 238 (388)
T ss_pred EEEecc-chhccCcHHHHHHHHHhhcCceeEEeee-cCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHh
Confidence 888777 666654432 22335688888877 555521 1234457788888887754221 122223
Q ss_pred cCcccccEEEeecCCCc
Q 043298 158 LPCAKLRRLGIYDCERL 174 (357)
Q Consensus 158 ~~l~~L~~L~l~~~~~~ 174 (357)
...+.|++|.+.+|-..
T Consensus 239 ~~W~~lrEL~lnDClls 255 (388)
T COG5238 239 CEWNLLRELRLNDCLLS 255 (388)
T ss_pred cccchhhhccccchhhc
Confidence 33456778877776543
No 74
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=89.82 E-value=0.22 Score=42.62 Aligned_cols=105 Identities=19% Similarity=0.208 Sum_probs=58.1
Q ss_pred ccccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCCCCCCcccceecccCCCcceEEEecC
Q 043298 19 PSSLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKYELPATLESLEVGNLPSSVKVLDVYG 98 (357)
Q Consensus 19 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~l~~~L~~L~l~~ 98 (357)
+..|+.|.+.++. ++.+.. +-. +++|++|.++. +..... ..+.-|-. .+|+ |+++++++
T Consensus 42 ~~~le~ls~~n~g-ltt~~~--------~P~--Lp~LkkL~lsd-n~~~~~----~~l~vl~e----~~P~-l~~l~ls~ 100 (260)
T KOG2739|consen 42 FVELELLSVINVG-LTTLTN--------FPK--LPKLKKLELSD-NYRRVS----GGLEVLAE----KAPN-LKVLNLSG 100 (260)
T ss_pred ccchhhhhhhccc-eeeccc--------CCC--cchhhhhcccC-Cccccc----ccceehhh----hCCc-eeEEeecC
Confidence 4567777777665 333221 122 44899999986 433222 11222222 4588 99999998
Q ss_pred CCCchhc---hhccCCCCcccEEEcccccCccccC----ccccCccccceeecccC
Q 043298 99 CPKLESI---AERLDNNTSLETISIYNCENLKILP----SGLHKLHQLREIWIREC 147 (357)
Q Consensus 99 c~~~~~~---~~~~~~~~~L~~L~l~~c~~l~~l~----~~~~~l~~L~~L~l~~~ 147 (357)
+.+..+ ++.. ...+|..|++..|.... +- ..+.-+++|+.|+-...
T Consensus 101 -Nki~~lstl~pl~-~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 101 -NKIKDLSTLRPLK-ELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred -Cccccccccchhh-hhcchhhhhcccCCccc-cccHHHHHHHHhhhhcccccccc
Confidence 666642 2222 34558888888865443 21 12334677777766553
No 75
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=85.99 E-value=0.41 Score=25.21 Aligned_cols=18 Identities=28% Similarity=0.429 Sum_probs=14.1
Q ss_pred cCCceEEecCChhhHHHh
Q 043298 313 SSLLLLWIEGCPLIEEKC 330 (357)
Q Consensus 313 ~~L~~L~i~~c~~l~~~~ 330 (357)
++|++|++++|+++++..
T Consensus 2 ~~L~~L~l~~C~~itD~g 19 (26)
T smart00367 2 PNLRELDLSGCTNITDEG 19 (26)
T ss_pred CCCCEeCCCCCCCcCHHH
Confidence 578888888888887754
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=83.14 E-value=0.74 Score=24.09 Aligned_cols=19 Identities=16% Similarity=0.364 Sum_probs=13.2
Q ss_pred cccceeeccccccccccccc
Q 043298 20 SSLKNLQIRDCYNIRTLTVE 39 (357)
Q Consensus 20 ~~L~~L~l~~~~~l~~~~~~ 39 (357)
++|+.|++++|. ++.+|..
T Consensus 2 ~~L~~L~L~~N~-l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQ-LSSLPPG 20 (26)
T ss_pred CCCCEEECCCCc-CCcCCHH
Confidence 567777777765 7777765
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=83.14 E-value=0.74 Score=24.09 Aligned_cols=19 Identities=16% Similarity=0.364 Sum_probs=13.2
Q ss_pred cccceeeccccccccccccc
Q 043298 20 SSLKNLQIRDCYNIRTLTVE 39 (357)
Q Consensus 20 ~~L~~L~l~~~~~l~~~~~~ 39 (357)
++|+.|++++|. ++.+|..
T Consensus 2 ~~L~~L~L~~N~-l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQ-LSSLPPG 20 (26)
T ss_pred CCCCEEECCCCc-CCcCCHH
Confidence 567777777765 7777765
No 78
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=70.88 E-value=2.5 Score=22.31 Aligned_cols=18 Identities=28% Similarity=0.432 Sum_probs=12.7
Q ss_pred cccceeecccccccccccc
Q 043298 20 SSLKNLQIRDCYNIRTLTV 38 (357)
Q Consensus 20 ~~L~~L~l~~~~~l~~~~~ 38 (357)
++|++|+++++. ++.+|.
T Consensus 2 ~~L~~L~vs~N~-Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQ-LTSLPE 19 (26)
T ss_pred cccceeecCCCc-cccCcc
Confidence 467777777766 777775
No 79
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=61.10 E-value=13 Score=22.32 Aligned_cols=29 Identities=21% Similarity=0.058 Sum_probs=13.7
Q ss_pred ceEEEecCCCCchhchhccCCCCcccEEEcc
Q 043298 91 VKVLDVYGCPKLESIAERLDNNTSLETISIY 121 (357)
Q Consensus 91 L~~L~l~~c~~~~~~~~~~~~~~~L~~L~l~ 121 (357)
+++|.+.+ ..-..+.... .|.++++|.+.
T Consensus 14 l~~L~~g~-~fn~~i~~~~-lP~sl~~L~fg 42 (44)
T PF05725_consen 14 LKSLIFGS-SFNQPIEPGS-LPNSLKSLSFG 42 (44)
T ss_pred CeEEEECC-ccCccCCCCc-cCCCceEEEee
Confidence 66666643 2222333333 45556666554
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=50.60 E-value=9.9 Score=19.20 Aligned_cols=12 Identities=17% Similarity=0.368 Sum_probs=6.1
Q ss_pred cccceeeccccc
Q 043298 20 SSLKNLQIRDCY 31 (357)
Q Consensus 20 ~~L~~L~l~~~~ 31 (357)
++|++|+|++|.
T Consensus 2 ~~L~~L~l~~n~ 13 (24)
T PF13516_consen 2 PNLETLDLSNNQ 13 (24)
T ss_dssp TT-SEEE-TSSB
T ss_pred CCCCEEEccCCc
Confidence 456666666655
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=46.30 E-value=0.84 Score=38.72 Aligned_cols=79 Identities=16% Similarity=0.204 Sum_probs=45.2
Q ss_pred ceEEEecCCCCchhchhccCCCCcccEEEcccccCccccCccccCccccceeecccCCCccccCCCCcCcccccEEEeec
Q 043298 91 VKVLDVYGCPKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSFPEGGLPCAKLRRLGIYD 170 (357)
Q Consensus 91 L~~L~l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~ 170 (357)
.+.||++. +.+......+.....+..|+++. +.+.-+|..++....+..++.+. +..+..|......+.++.++...
T Consensus 44 ~tvld~~s-~r~vn~~~n~s~~t~~~rl~~sk-nq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~k~~~~k~~e~k~ 120 (326)
T KOG0473|consen 44 VTVLDLSS-NRLVNLGKNFSILTRLVRLDLSK-NQIKFLPKDAKQQRETVNAASHK-NNHSQQPKSQKKEPHPKKNEQKK 120 (326)
T ss_pred eeeehhhh-hHHHhhccchHHHHHHHHHhccH-hhHhhChhhHHHHHHHHHHHhhc-cchhhCCccccccCCcchhhhcc
Confidence 55566665 44444444332333455566665 56666666666666666666655 45566666666666666666655
Q ss_pred CC
Q 043298 171 CE 172 (357)
Q Consensus 171 ~~ 172 (357)
+.
T Consensus 121 ~~ 122 (326)
T KOG0473|consen 121 TE 122 (326)
T ss_pred Cc
Confidence 44
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=34.21 E-value=1.9 Score=36.71 Aligned_cols=77 Identities=9% Similarity=0.080 Sum_probs=56.8
Q ss_pred ccEEEcccccCccccCccccCccccceeecccCCCccccCCCCcCcccccEEEeecCCCcccccccccCCCCCceEEecC
Q 043298 115 LETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSFPEGGLPCAKLRRLGIYDCERLEALPKGLHNLSSLQELTIGG 194 (357)
Q Consensus 115 L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 194 (357)
.+.|+++. +++-.+-..++-++.+..|+++. +.+...|..+.....+..++... +.....|.+++..+.+++++...
T Consensus 44 ~tvld~~s-~r~vn~~~n~s~~t~~~rl~~sk-nq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~k~~~~k~~e~k~ 120 (326)
T KOG0473|consen 44 VTVLDLSS-NRLVNLGKNFSILTRLVRLDLSK-NQIKFLPKDAKQQRETVNAASHK-NNHSQQPKSQKKEPHPKKNEQKK 120 (326)
T ss_pred eeeehhhh-hHHHhhccchHHHHHHHHHhccH-hhHhhChhhHHHHHHHHHHHhhc-cchhhCCccccccCCcchhhhcc
Confidence 67788877 66666666677788888888887 56777787777666676766654 55677888888888888887655
No 83
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=32.92 E-value=31 Score=18.15 Aligned_cols=11 Identities=18% Similarity=0.350 Sum_probs=5.3
Q ss_pred ccceeeccccc
Q 043298 21 SLKNLQIRDCY 31 (357)
Q Consensus 21 ~L~~L~l~~~~ 31 (357)
+|++|+++++.
T Consensus 3 ~L~~L~L~~Nk 13 (26)
T smart00365 3 NLEELDLSQNK 13 (26)
T ss_pred ccCEEECCCCc
Confidence 44555555443
No 84
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=24.32 E-value=47 Score=17.57 Aligned_cols=12 Identities=25% Similarity=0.446 Sum_probs=7.5
Q ss_pred cccceeeccccc
Q 043298 20 SSLKNLQIRDCY 31 (357)
Q Consensus 20 ~~L~~L~l~~~~ 31 (357)
++|++|+|++|.
T Consensus 2 ~~L~~LdL~~N~ 13 (28)
T smart00368 2 PSLRELDLSNNK 13 (28)
T ss_pred CccCEEECCCCC
Confidence 356667776665
Done!