Query 043298
Match_columns 357
No_of_seqs 180 out of 2129
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 05:35:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043298.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043298hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fmz_A Internalin; leucine ric 99.9 2.4E-24 8.2E-29 196.0 20.5 288 19-353 43-344 (347)
2 3rgz_A Protein brassinosteroid 99.9 3.2E-24 1.1E-28 215.0 15.2 281 54-348 395-766 (768)
3 3v47_A TOLL-like receptor 5B a 99.9 3.4E-23 1.2E-27 195.3 21.5 286 9-323 21-405 (455)
4 2id5_A Lingo-1, leucine rich r 99.9 6.3E-23 2.1E-27 194.7 21.3 287 9-324 22-331 (477)
5 3o6n_A APL1; leucine-rich repe 99.9 1.6E-22 5.6E-27 186.9 20.5 271 19-324 44-350 (390)
6 4eco_A Uncharacterized protein 99.9 9.8E-23 3.3E-27 199.9 19.6 290 8-322 193-545 (636)
7 4fmz_A Internalin; leucine ric 99.9 7.4E-23 2.5E-27 186.1 17.3 284 2-324 49-344 (347)
8 2z7x_B TOLL-like receptor 1, v 99.9 2E-22 6.9E-27 193.2 21.2 57 266-324 421-479 (520)
9 4eco_A Uncharacterized protein 99.9 6.1E-23 2.1E-27 201.3 17.4 281 19-324 272-598 (636)
10 4ecn_A Leucine-rich repeat pro 99.9 2.9E-22 9.9E-27 200.9 21.8 293 9-324 436-787 (876)
11 3t6q_A CD180 antigen; protein- 99.9 6E-22 2E-26 193.4 23.7 60 180-243 273-334 (606)
12 1o6v_A Internalin A; bacterial 99.9 2.2E-22 7.6E-27 190.4 19.9 304 3-354 52-387 (466)
13 3rgz_A Protein brassinosteroid 99.9 8E-23 2.7E-27 204.8 16.6 60 264-323 464-524 (768)
14 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 7E-22 2.4E-26 191.3 22.6 106 3-122 37-155 (562)
15 2z81_A CD282 antigen, TOLL-lik 99.9 1E-21 3.4E-26 189.6 21.9 143 9-165 16-176 (549)
16 4ecn_A Leucine-rich repeat pro 99.9 6E-22 2.1E-26 198.6 20.7 282 19-324 514-838 (876)
17 2id5_A Lingo-1, leucine rich r 99.9 1.5E-21 5.2E-26 185.2 22.4 271 2-301 37-331 (477)
18 1o6v_A Internalin A; bacterial 99.9 1.2E-21 4E-26 185.4 20.9 265 19-324 111-386 (466)
19 3oja_B Anopheles plasmodium-re 99.9 1.2E-21 4E-26 191.0 20.7 270 20-324 51-356 (597)
20 3vq2_A TLR4, TOLL-like recepto 99.9 1.7E-21 5.8E-26 190.2 21.8 124 10-147 23-163 (606)
21 4fcg_A Uncharacterized protein 99.9 8.5E-22 2.9E-26 177.8 18.0 218 54-299 82-310 (328)
22 3bz5_A Internalin-J, INLJ; leu 99.9 1.3E-21 4.6E-26 184.2 20.0 269 19-327 41-321 (457)
23 3t6q_A CD180 antigen; protein- 99.9 2E-21 6.8E-26 189.7 21.6 280 21-324 255-558 (606)
24 2z7x_B TOLL-like receptor 1, v 99.9 2.3E-21 7.9E-26 185.9 21.6 107 2-122 5-124 (520)
25 1xku_A Decorin; proteoglycan, 99.9 5.9E-21 2E-25 172.4 21.7 285 21-352 32-329 (330)
26 4fcg_A Uncharacterized protein 99.9 1E-21 3.5E-26 177.2 15.9 219 87-322 80-310 (328)
27 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.2E-20 4E-25 182.7 24.2 105 2-123 57-179 (562)
28 2z63_A TOLL-like receptor 4, v 99.9 3E-21 1E-25 187.0 19.2 107 205-323 395-504 (570)
29 3bz5_A Internalin-J, INLJ; leu 99.9 1.2E-20 4E-25 177.8 21.8 275 2-323 47-349 (457)
30 3v47_A TOLL-like receptor 5B a 99.9 4E-21 1.4E-25 181.1 18.3 274 2-301 35-406 (455)
31 3j0a_A TOLL-like receptor 5; m 99.9 1.2E-20 4.2E-25 190.8 23.1 150 9-173 15-186 (844)
32 2z81_A CD282 antigen, TOLL-lik 99.9 3.6E-21 1.2E-25 185.7 17.8 108 2-122 31-157 (549)
33 2ft3_A Biglycan; proteoglycan, 99.9 1E-20 3.6E-25 171.0 19.7 284 21-352 34-330 (332)
34 1ziw_A TOLL-like receptor 3; i 99.9 3.4E-20 1.2E-24 183.5 24.2 185 131-323 399-594 (680)
35 2z63_A TOLL-like receptor 4, v 99.9 1.1E-20 3.7E-25 183.1 20.2 123 10-147 19-159 (570)
36 3j0a_A TOLL-like receptor 5; m 99.9 5.1E-20 1.7E-24 186.3 25.2 292 2-323 29-391 (844)
37 3vq2_A TLR4, TOLL-like recepto 99.9 1.8E-20 6E-25 183.0 21.1 265 18-324 283-556 (606)
38 3o6n_A APL1; leucine-rich repe 99.9 1.2E-20 4.3E-25 174.3 18.7 269 52-354 44-351 (390)
39 1ziw_A TOLL-like receptor 3; i 99.9 5.1E-20 1.7E-24 182.2 24.0 255 54-324 330-620 (680)
40 1xku_A Decorin; proteoglycan, 99.8 1.3E-19 4.4E-24 163.7 22.2 271 9-323 42-329 (330)
41 2ft3_A Biglycan; proteoglycan, 99.8 5.8E-20 2E-24 166.1 19.3 271 9-324 44-331 (332)
42 3oja_B Anopheles plasmodium-re 99.8 3.1E-20 1.1E-24 181.0 18.0 268 52-353 50-356 (597)
43 1jl5_A Outer protein YOPM; leu 99.8 2.7E-19 9.3E-24 168.3 23.7 271 2-324 76-368 (454)
44 2z80_A TOLL-like receptor 2, v 99.8 3.6E-20 1.2E-24 168.9 16.0 269 19-324 30-312 (353)
45 1ogq_A PGIP-2, polygalacturona 99.8 1.3E-20 4.6E-25 168.8 12.5 246 54-327 51-305 (313)
46 1jl5_A Outer protein YOPM; leu 99.8 8E-19 2.7E-23 165.1 23.9 252 19-324 110-407 (454)
47 1ogq_A PGIP-2, polygalacturona 99.8 7.9E-20 2.7E-24 163.8 14.4 247 20-305 50-306 (313)
48 4g8a_A TOLL-like receptor 4; l 99.8 1.4E-18 4.9E-23 170.0 24.3 108 203-323 466-577 (635)
49 2z66_A Variable lymphocyte rec 99.8 5.3E-19 1.8E-23 157.8 16.6 208 10-243 19-232 (306)
50 3g06_A SSPH2 (leucine-rich rep 99.8 2.6E-18 8.8E-23 166.9 22.5 194 87-324 100-295 (622)
51 3zyj_A Leucine-rich repeat-con 99.8 3.1E-18 1E-22 160.8 21.9 239 22-300 45-289 (440)
52 3g06_A SSPH2 (leucine-rich rep 99.8 4.8E-18 1.6E-22 165.0 23.2 234 9-300 51-294 (622)
53 2xwt_C Thyrotropin receptor; s 99.8 9.7E-19 3.3E-23 150.5 16.1 210 99-326 20-239 (239)
54 2z66_A Variable lymphocyte rec 99.8 1.6E-18 5.6E-23 154.6 17.9 239 23-300 10-258 (306)
55 3o53_A Protein LRIM1, AGAP0063 99.8 2.2E-20 7.4E-25 167.8 5.7 244 19-308 33-280 (317)
56 2z80_A TOLL-like receptor 2, v 99.8 2.2E-18 7.4E-23 157.1 18.8 258 9-301 42-312 (353)
57 3zyi_A Leucine-rich repeat-con 99.8 4.8E-18 1.6E-22 160.0 21.8 219 54-300 76-300 (452)
58 3zyj_A Leucine-rich repeat-con 99.8 7E-18 2.4E-22 158.3 18.0 237 54-324 44-290 (440)
59 1ozn_A Reticulon 4 receptor; N 99.8 6.7E-18 2.3E-22 149.1 16.8 195 91-300 34-235 (285)
60 1ozn_A Reticulon 4 receptor; N 99.8 4.3E-18 1.5E-22 150.4 14.9 172 91-276 58-235 (285)
61 3zyi_A Leucine-rich repeat-con 99.8 1.4E-17 4.7E-22 156.9 19.2 236 55-324 56-301 (452)
62 3oja_A Leucine-rich immune mol 99.8 1.1E-18 3.9E-23 165.6 10.2 235 19-298 33-270 (487)
63 1wwl_A Monocyte differentiatio 99.7 4.2E-19 1.4E-23 159.0 3.3 81 231-323 225-306 (312)
64 2xwt_C Thyrotropin receptor; s 99.7 5E-17 1.7E-21 139.7 15.5 206 6-243 19-235 (239)
65 4g8a_A TOLL-like receptor 4; l 99.7 1.7E-16 5.8E-21 155.3 20.0 154 135-301 418-578 (635)
66 1p9a_G Platelet glycoprotein I 99.7 2.7E-16 9.3E-21 139.1 16.8 196 48-277 7-206 (290)
67 3o53_A Protein LRIM1, AGAP0063 99.7 9.5E-17 3.2E-21 144.0 13.0 260 21-328 11-277 (317)
68 4ay9_X Follicle-stimulating ho 99.7 3.5E-16 1.2E-20 142.2 16.9 236 55-322 11-255 (350)
69 2o6q_A Variable lymphocyte rec 99.7 7.9E-16 2.7E-20 134.7 18.1 146 91-243 39-190 (270)
70 2z62_A TOLL-like receptor 4, v 99.7 4.6E-16 1.6E-20 136.6 16.0 192 114-321 29-232 (276)
71 4ay9_X Follicle-stimulating ho 99.7 1.3E-15 4.3E-20 138.6 19.0 237 23-299 12-255 (350)
72 2o6q_A Variable lymphocyte rec 99.7 3.6E-15 1.2E-19 130.5 19.0 192 91-300 18-215 (270)
73 3oja_A Leucine-rich immune mol 99.7 4.4E-16 1.5E-20 147.7 13.6 210 54-301 35-248 (487)
74 1wwl_A Monocyte differentiatio 99.7 8E-17 2.7E-21 144.1 7.6 193 87-299 94-305 (312)
75 2z62_A TOLL-like receptor 4, v 99.7 1.4E-15 4.8E-20 133.5 14.9 153 18-194 26-186 (276)
76 1p9a_G Platelet glycoprotein I 99.7 3.7E-15 1.3E-19 131.8 17.7 193 18-243 8-204 (290)
77 1h6u_A Internalin H; cell adhe 99.7 1.6E-15 5.3E-20 135.4 14.8 195 86-308 39-234 (308)
78 1h6u_A Internalin H; cell adhe 99.7 7.1E-16 2.4E-20 137.7 12.5 168 91-283 65-233 (308)
79 1z7x_W Ribonuclease inhibitor; 99.6 3.6E-18 1.2E-22 161.1 -6.6 210 19-243 27-293 (461)
80 3rfs_A Internalin B, repeat mo 99.6 1.1E-15 3.7E-20 134.0 9.7 195 16-243 15-214 (272)
81 3ogk_B Coronatine-insensitive 99.6 3.2E-17 1.1E-21 159.4 -1.0 34 86-121 218-251 (592)
82 4glp_A Monocyte differentiatio 99.6 4.6E-15 1.6E-19 132.5 12.5 222 91-324 66-305 (310)
83 2p1m_B Transport inhibitor res 99.6 2.7E-17 9.4E-22 159.9 -4.7 59 265-325 455-518 (594)
84 1z7x_W Ribonuclease inhibitor; 99.6 2.2E-17 7.7E-22 155.6 -5.3 236 19-276 2-294 (461)
85 3rfs_A Internalin B, repeat mo 99.6 5.1E-14 1.7E-18 123.3 16.0 190 86-300 39-232 (272)
86 2ast_B S-phase kinase-associat 99.6 2.3E-16 8E-21 142.4 0.7 103 91-194 95-204 (336)
87 2ast_B S-phase kinase-associat 99.6 8.1E-16 2.8E-20 138.9 4.1 108 86-194 116-231 (336)
88 2p1m_B Transport inhibitor res 99.6 3.5E-17 1.2E-21 159.2 -5.8 113 205-325 371-493 (594)
89 3m19_A Variable lymphocyte rec 99.6 7.1E-14 2.4E-18 120.9 15.6 169 91-276 16-189 (251)
90 3m19_A Variable lymphocyte rec 99.6 9.6E-14 3.3E-18 120.0 16.1 171 113-300 14-189 (251)
91 4glp_A Monocyte differentiatio 99.6 1.1E-14 3.6E-19 130.2 9.9 199 86-304 89-307 (310)
92 3ogk_B Coronatine-insensitive 99.5 5E-15 1.7E-19 143.9 6.1 282 19-324 191-524 (592)
93 1h6t_A Internalin B; cell adhe 99.5 1.6E-13 5.6E-18 121.3 11.3 162 54-243 47-209 (291)
94 1h6t_A Internalin B; cell adhe 99.5 3.1E-13 1E-17 119.5 12.4 171 112-307 45-216 (291)
95 4ezg_A Putative uncharacterize 99.5 1.7E-13 5.8E-18 113.9 10.0 100 91-194 46-145 (197)
96 3cvr_A Invasion plasmid antige 99.5 9E-13 3.1E-17 126.6 15.7 185 54-288 60-252 (571)
97 3cvr_A Invasion plasmid antige 99.4 1.6E-12 5.4E-17 124.9 15.3 172 21-243 60-239 (571)
98 4ezg_A Putative uncharacterize 99.4 6.8E-13 2.3E-17 110.3 10.6 148 134-300 41-191 (197)
99 2o6s_A Variable lymphocyte rec 99.4 1.2E-12 4E-17 109.8 11.7 170 93-287 11-186 (208)
100 1m9s_A Internalin B; cell inva 99.4 1.3E-12 4.4E-17 126.7 13.0 173 111-308 41-214 (605)
101 1m9s_A Internalin B; cell inva 99.4 6.1E-13 2.1E-17 129.0 10.5 168 16-216 39-207 (605)
102 1xeu_A Internalin C; cellular 99.4 4.8E-13 1.6E-17 116.5 8.8 138 91-243 21-159 (263)
103 2ca6_A RAN GTPase-activating p 99.4 4.8E-14 1.7E-18 129.8 2.3 234 48-305 29-317 (386)
104 3goz_A Leucine-rich repeat-con 99.4 2.1E-14 7E-19 131.1 -0.6 220 91-324 24-295 (362)
105 2ca6_A RAN GTPase-activating p 99.4 6E-14 2E-18 129.2 0.3 222 86-324 30-314 (386)
106 1xeu_A Internalin C; cellular 99.3 2.6E-12 8.9E-17 111.8 9.2 169 113-307 19-188 (263)
107 2v9t_B SLIT homolog 2 protein 99.3 1.8E-11 6.3E-16 103.4 14.2 144 117-276 15-162 (220)
108 1dce_A Protein (RAB geranylger 99.3 5.8E-15 2E-19 142.2 -9.9 34 19-62 348-381 (567)
109 2v70_A SLIT-2, SLIT homolog 2 99.3 1.9E-11 6.6E-16 103.3 13.0 146 23-194 14-162 (220)
110 2v9t_B SLIT homolog 2 protein 99.3 1.6E-11 5.6E-16 103.8 12.4 101 91-194 34-137 (220)
111 2v70_A SLIT-2, SLIT homolog 2 99.3 1.9E-11 6.3E-16 103.4 12.5 142 93-243 15-162 (220)
112 3goz_A Leucine-rich repeat-con 99.3 1.2E-13 4.1E-18 126.1 -1.6 240 19-275 21-293 (362)
113 2o6s_A Variable lymphocyte rec 99.3 2.7E-11 9.3E-16 101.4 13.0 170 115-308 9-183 (208)
114 3e6j_A Variable lymphocyte rec 99.3 3E-11 1E-15 102.8 13.2 144 115-276 21-169 (229)
115 2xot_A Amphoterin-induced prot 99.3 1.1E-11 3.6E-16 113.1 10.3 167 55-243 20-198 (361)
116 2xot_A Amphoterin-induced prot 99.3 3E-11 1E-15 110.0 13.0 168 92-276 21-199 (361)
117 3e6j_A Variable lymphocyte rec 99.3 5.6E-11 1.9E-15 101.1 13.8 143 91-243 21-168 (229)
118 1dce_A Protein (RAB geranylger 99.3 8.7E-14 3E-18 134.0 -5.5 189 112-319 348-566 (567)
119 2ell_A Acidic leucine-rich nuc 99.2 2.7E-11 9.1E-16 97.8 9.2 129 111-243 22-156 (168)
120 3sb4_A Hypothetical leucine ri 99.2 1.1E-10 3.8E-15 104.9 12.3 120 54-192 26-155 (329)
121 2wfh_A SLIT homolog 2 protein 99.2 2.4E-10 8.2E-15 94.4 11.5 120 92-216 13-136 (193)
122 3sb4_A Hypothetical leucine ri 99.1 2.8E-10 9.6E-15 102.2 12.3 213 87-319 100-327 (329)
123 2ell_A Acidic leucine-rich nuc 99.1 2.1E-10 7.3E-15 92.5 9.9 132 137-307 24-163 (168)
124 2je0_A Acidic leucine-rich nuc 99.1 6.5E-11 2.2E-15 93.5 5.4 80 112-194 16-97 (149)
125 1w8a_A SLIT protein; signaling 99.1 5E-10 1.7E-14 92.4 11.0 97 93-194 12-111 (192)
126 4b8c_D Glucose-repressible alc 99.1 3E-11 1E-15 119.8 3.8 100 113-215 224-325 (727)
127 2je0_A Acidic leucine-rich nuc 99.1 2.2E-10 7.5E-15 90.4 7.8 123 161-298 17-148 (149)
128 1a9n_A U2A', U2A'; complex (nu 99.1 1.5E-10 5.1E-15 94.2 6.3 99 91-194 21-122 (176)
129 4fdw_A Leucine rich hypothetic 99.0 2E-08 6.8E-13 92.5 20.2 255 19-322 112-379 (401)
130 2wfh_A SLIT homolog 2 protein 99.0 1.7E-09 5.8E-14 89.3 11.2 121 55-194 12-135 (193)
131 4fdw_A Leucine rich hypothetic 99.0 3.6E-08 1.2E-12 90.8 21.0 231 54-323 114-355 (401)
132 1w8a_A SLIT protein; signaling 99.0 1.6E-09 5.5E-14 89.4 10.7 101 91-194 31-135 (192)
133 1a9n_A U2A', U2A'; complex (nu 99.0 6.9E-10 2.4E-14 90.2 6.4 35 135-170 17-51 (176)
134 2o6r_A Variable lymphocyte rec 99.0 5.1E-09 1.7E-13 85.0 11.6 118 93-215 11-133 (177)
135 4b8c_D Glucose-repressible alc 98.9 5.1E-10 1.8E-14 111.0 3.4 107 130-243 217-325 (727)
136 2o6r_A Variable lymphocyte rec 98.9 1.4E-08 4.8E-13 82.4 11.5 80 115-199 9-91 (177)
137 4fs7_A Uncharacterized protein 98.8 3.7E-07 1.3E-11 83.9 20.5 273 11-322 60-375 (394)
138 1ds9_A Outer arm dynein; leuci 98.7 3.3E-10 1.1E-14 94.0 -2.9 110 102-216 37-150 (198)
139 1ds9_A Outer arm dynein; leuci 98.7 1.7E-10 5.6E-15 95.8 -5.4 123 115-243 25-149 (198)
140 3g39_A Variable lymphocyte rec 98.7 5.5E-08 1.9E-12 78.4 9.0 98 91-194 11-111 (170)
141 2r9u_A Variable lymphocyte rec 98.7 7.5E-08 2.6E-12 77.9 9.6 97 92-194 15-114 (174)
142 3g39_A Variable lymphocyte rec 98.6 1.7E-07 5.9E-12 75.4 10.1 97 115-216 11-112 (170)
143 2r9u_A Variable lymphocyte rec 98.6 2.2E-07 7.4E-12 75.2 10.1 96 115-215 14-114 (174)
144 4gt6_A Cell surface protein; l 98.5 3.4E-06 1.2E-10 77.4 17.5 256 10-299 51-366 (394)
145 4fs7_A Uncharacterized protein 98.5 4.3E-06 1.5E-10 76.7 16.9 148 132-299 225-375 (394)
146 4gt6_A Cell surface protein; l 98.4 3.1E-05 1E-09 71.0 21.1 258 32-324 50-368 (394)
147 2ifg_A High affinity nerve gro 98.3 1.2E-06 4E-11 79.0 8.9 97 94-194 13-112 (347)
148 3e4g_A ATP synthase subunit S, 98.3 5.9E-07 2E-11 72.0 4.0 39 207-250 62-100 (176)
149 2ifg_A High affinity nerve gro 98.2 3E-06 1E-10 76.2 8.6 103 56-173 11-115 (347)
150 4h09_A Hypothetical leucine ri 98.2 0.00037 1.3E-08 63.3 22.5 42 19-73 45-86 (379)
151 4h09_A Hypothetical leucine ri 98.2 0.00033 1.1E-08 63.6 21.8 103 180-297 235-340 (379)
152 3e4g_A ATP synthase subunit S, 98.2 1.3E-06 4.5E-11 70.0 4.5 66 206-281 85-154 (176)
153 3un9_A NLR family member X1; l 98.1 1E-07 3.6E-12 86.8 -3.8 130 91-223 103-255 (372)
154 2ra8_A Uncharacterized protein 98.0 4.2E-06 1.4E-10 75.7 4.8 14 133-146 135-148 (362)
155 2ra8_A Uncharacterized protein 98.0 1.4E-06 4.8E-11 78.8 1.3 77 113-193 139-227 (362)
156 3un9_A NLR family member X1; l 97.9 8.9E-07 3E-11 80.6 -1.3 105 87-194 71-192 (372)
157 1io0_A Tropomodulin; LRR prote 96.5 0.00064 2.2E-08 55.1 1.0 11 206-216 151-161 (185)
158 3rw6_A Nuclear RNA export fact 96.3 0.0016 5.6E-08 55.8 2.7 77 113-192 170-258 (267)
159 3rw6_A Nuclear RNA export fact 96.3 0.0016 5.3E-08 56.0 2.4 35 160-194 169-205 (267)
160 1io0_A Tropomodulin; LRR prote 96.1 0.00062 2.1E-08 55.2 -1.3 12 265-276 150-161 (185)
161 3rfe_A Platelet glycoprotein I 93.3 0.1 3.6E-06 39.2 4.8 51 94-148 13-66 (130)
162 3rfe_A Platelet glycoprotein I 92.6 0.089 3E-06 39.5 3.4 36 18-62 29-64 (130)
163 1pgv_A TMD-1, tropomodulin TMD 81.5 0.37 1.3E-05 38.9 0.7 9 114-122 71-79 (197)
164 1pgv_A TMD-1, tropomodulin TMD 76.9 0.97 3.3E-05 36.5 1.7 36 113-148 41-81 (197)
165 2lz0_A Uncharacterized protein 29.7 54 0.0018 22.7 3.6 14 46-61 15-28 (100)
No 1
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=2.4e-24 Score=196.02 Aligned_cols=288 Identities=20% Similarity=0.174 Sum_probs=163.9
Q ss_pred ccccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCCCCCCcccceecc-----------cC
Q 043298 19 PSSLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKYELPATLESLEVG-----------NL 87 (357)
Q Consensus 19 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~-----------~l 87 (357)
+++|++|+++++. +..++. +..++ +|++|++++| .++.+ +....+++|+.|+++ .+
T Consensus 43 l~~L~~L~l~~~~-i~~~~~--------~~~~~--~L~~L~l~~n-~i~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~l 109 (347)
T 4fmz_A 43 LESITKLVVAGEK-VASIQG--------IEYLT--NLEYLNLNGN-QITDI-SPLSNLVKLTNLYIGTNKITDISALQNL 109 (347)
T ss_dssp HTTCSEEECCSSC-CCCCTT--------GGGCT--TCCEEECCSS-CCCCC-GGGTTCTTCCEEECCSSCCCCCGGGTTC
T ss_pred cccccEEEEeCCc-cccchh--------hhhcC--CccEEEccCC-ccccc-hhhhcCCcCCEEEccCCcccCchHHcCC
Confidence 4555555555554 444442 13344 5555555553 34444 334445555555554 55
Q ss_pred CCcceEEEecCCCCchhchhccCCCCcccEEEcccccCccccCccccCccccceeecccCCCccccCCCCcCcccccEEE
Q 043298 88 PSSVKVLDVYGCPKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSFPEGGLPCAKLRRLG 167 (357)
Q Consensus 88 ~~~L~~L~l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~ 167 (357)
++ |++|++++ +.++.++... .+.+|+.|++++|..+..++ .+..+++|+.|++++|. +..++. +..+++|+.|+
T Consensus 110 ~~-L~~L~l~~-n~i~~~~~~~-~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~-~~~~~~-~~~l~~L~~L~ 183 (347)
T 4fmz_A 110 TN-LRELYLNE-DNISDISPLA-NLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESK-VKDVTP-IANLTDLYSLS 183 (347)
T ss_dssp TT-CSEEECTT-SCCCCCGGGT-TCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEE
T ss_pred Cc-CCEEECcC-CcccCchhhc-cCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCC-cCCchh-hccCCCCCEEE
Confidence 66 77777777 4566665533 45557777777765555443 36677777777777753 333333 55567777777
Q ss_pred eecCCCcccccccccCCCCCceEEecC-ccCCccCCCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeecCCC
Q 043298 168 IYDCERLEALPKGLHNLSSLQELTIGG-ELPSLEEDGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDD 246 (357)
Q Consensus 168 l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~ 246 (357)
+++|. +..++. +..+++|+.+++.+ .+..++....+++|++|++++| .++..++ +..+++|++|++++ |
T Consensus 184 l~~n~-l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n-~l~~~~~-----~~~l~~L~~L~l~~-n- 253 (347)
T 4fmz_A 184 LNYNQ-IEDISP-LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNN-KITDLSP-----LANLSQLTWLEIGT-N- 253 (347)
T ss_dssp CTTSC-CCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSS-CCCCCGG-----GTTCTTCCEEECCS-S-
T ss_pred ccCCc-cccccc-ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCC-ccCCCcc-----hhcCCCCCEEECCC-C-
Confidence 77654 333432 66677777777777 5555544555667777777774 3444441 46667777777777 3
Q ss_pred CCCcCccccccccCCCCCCCCccEEEcCccccCcccccccccccccCeeccccCCCCcccCCC--CCccCCceEEecCCh
Q 043298 247 DMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLEHLSSSIVDLQNLTSLGLYNCPKLKYFPEK--GLPSSLLLLWIEGCP 324 (357)
Q Consensus 247 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~ 324 (357)
.+..++. . ..+++|++|++++| .+..++ .+..+++|++|++.+| .++..+.. +.+++|++|++++|+
T Consensus 254 ~l~~~~~-~-------~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 254 QISDINA-V-------KDLTKLKMLNVGSN-QISDIS-VLNNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp CCCCCGG-G-------TTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSS-CCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred ccCCChh-H-------hcCCCcCEEEccCC-ccCCCh-hhcCCCCCCEEECcCC-cCCCcChhHhhccccCCEEEccCCc
Confidence 4444432 2 35667777777774 455553 3566777777777775 34433321 124677777777764
Q ss_pred hhHHHhhcCCCccccccCCcceEEEeeEE
Q 043298 325 LIEEKCRKDGGQYWDLLTHIPYVVIDWKW 353 (357)
Q Consensus 325 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (357)
++.... +...+.+..+++.++.
T Consensus 323 -l~~~~~------~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 323 -ITDIRP------LASLSKMDSADFANQV 344 (347)
T ss_dssp -CCCCGG------GGGCTTCSEESSSCC-
T ss_pred -cccccC------hhhhhccceeehhhhc
Confidence 222111 3345556666555544
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.91 E-value=3.2e-24 Score=214.97 Aligned_cols=281 Identities=19% Similarity=0.105 Sum_probs=171.8
Q ss_pred CccEEEEecCCCccccccCC-CCCCcccceecc-------------cCCCcceEEEecCCCCchhchhccCCCCcccEEE
Q 043298 54 LLEELFVFNCDSLTCIFSKY-ELPATLESLEVG-------------NLPSSVKVLDVYGCPKLESIAERLDNNTSLETIS 119 (357)
Q Consensus 54 ~L~~L~l~~c~~l~~~~~~~-~~~~~L~~L~l~-------------~l~~~L~~L~l~~c~~~~~~~~~~~~~~~L~~L~ 119 (357)
+|++|++++|. ++...|.. ..+++|+.|+++ .+++ |++|++++|.....+|...+.+.+|+.|+
T Consensus 395 ~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 472 (768)
T 3rgz_A 395 TLQELYLQNNG-FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK-LRDLKLWLNMLEGEIPQELMYVKTLETLI 472 (768)
T ss_dssp CCCEEECCSSE-EEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTT-CCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred CccEEECCCCc-cccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCC-CCEEECCCCcccCcCCHHHcCCCCceEEE
Confidence 56666666643 33222433 455666666665 4556 77777777543335555554556677777
Q ss_pred cccccCccccCccccCccccceeecccCCCccccCCCCcCcccccEEEeecCCCcccccccccCCCCCceEEecC-ccC-
Q 043298 120 IYNCENLKILPSGLHKLHQLREIWIRECGNLVSFPEGGLPCAKLRRLGIYDCERLEALPKGLHNLSSLQELTIGG-ELP- 197 (357)
Q Consensus 120 l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~- 197 (357)
+++|.-...+|..+..+++|+.|++++|.....+|..+..+++|+.|++++|+..+.+|..++.+++|+.|++++ .+.
T Consensus 473 L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 552 (768)
T 3rgz_A 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred ecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCC
Confidence 777433335677777778888888877665556777777777888888888777667777778888888888776 222
Q ss_pred CccC-----------------------------------------------------------------------CCCCC
Q 043298 198 SLEE-----------------------------------------------------------------------DGLPT 206 (357)
Q Consensus 198 ~~~~-----------------------------------------------------------------------~~~~~ 206 (357)
.+|. ...++
T Consensus 553 ~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~ 632 (768)
T 3rgz_A 553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632 (768)
T ss_dssp BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSB
T ss_pred cCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccc
Confidence 1111 11235
Q ss_pred ccceEEecCCcchhhhhhhcccccCCCCCcceEEeecCCCCCCcCccccccccCCCCCCCCccEEEcCccccCccccccc
Q 043298 207 NLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLEHLSSSI 286 (357)
Q Consensus 207 ~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~ 286 (357)
+|+.|++++|. ++...+ ..+..++.|+.|++++ +.-...+|... ..+++|+.|+++++.--..+|..+
T Consensus 633 ~L~~LdLs~N~-l~g~ip---~~l~~l~~L~~L~Ls~-N~l~g~ip~~l-------~~L~~L~~LdLs~N~l~g~ip~~l 700 (768)
T 3rgz_A 633 SMMFLDMSYNM-LSGYIP---KEIGSMPYLFILNLGH-NDISGSIPDEV-------GDLRGLNILDLSSNKLDGRIPQAM 700 (768)
T ss_dssp CCCEEECCSSC-CBSCCC---GGGGGCTTCCEEECCS-SCCCSCCCGGG-------GGCTTCCEEECCSSCCEECCCGGG
T ss_pred cccEEECcCCc-ccccCC---HHHhccccCCEEeCcC-CccCCCCChHH-------hCCCCCCEEECCCCcccCcCChHH
Confidence 67778888744 443333 2467788888888888 43333666665 467788888888854434778777
Q ss_pred ccccccCeeccccCCCCcccCCCCCccCCceEEecCChhhH----HHhhcCCCccccccCCcceEE
Q 043298 287 VDLQNLTSLGLYNCPKLKYFPEKGLPSSLLLLWIEGCPLIE----EKCRKDGGQYWDLLTHIPYVV 348 (357)
Q Consensus 287 ~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~l~----~~~~~~~~~~~~~~~~~~~~~ 348 (357)
..+++|++|++++++--..+|..+.+..+....+.+++.|= ..|....++.|++++|.+.++
T Consensus 701 ~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 701 SALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp GGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC--------------
T ss_pred hCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCccccC
Confidence 88888888888885444457766666666666666655321 157778888999999988654
No 3
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=3.4e-23 Score=195.26 Aligned_cols=286 Identities=20% Similarity=0.208 Sum_probs=192.7
Q ss_pred ccccccccccccccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCC--CCCCcccceecc-
Q 043298 9 SLTYIAAVQLPSSLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKY--ELPATLESLEVG- 85 (357)
Q Consensus 9 ~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~--~~~~~L~~L~l~- 85 (357)
+++.+|. ++++|++|+++++. ++.++.. .+..++ +|++|+++++.....+ ++. ..+++|+.|+++
T Consensus 21 ~l~~lp~--l~~~l~~L~Ls~n~-i~~~~~~------~~~~l~--~L~~L~L~~n~~~~~i-~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 21 GLHQVPE--LPAHVNYVDLSLNS-IAELNET------SFSRLQ--DLQFLKVEQQTPGLVI-RNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp CCSSCCC--CCTTCCEEECCSSC-CCEECTT------TTSSCT--TCCEEECCCCSTTCEE-CTTTTTTCTTCCEEECTT
T ss_pred CcccCCC--CCCccCEEEecCCc-cCcCChh------HhccCc--cccEEECcCCcccceE-CcccccccccCCEEeCCC
Confidence 4566665 66899999999987 7777555 567777 9999999996543344 443 667888888887
Q ss_pred ------------cCCCcceEEEecCCCCchh-chhc--cCCCCcccEEEcccccCcccc-Ccc-ccCccccceeecccCC
Q 043298 86 ------------NLPSSVKVLDVYGCPKLES-IAER--LDNNTSLETISIYNCENLKIL-PSG-LHKLHQLREIWIRECG 148 (357)
Q Consensus 86 ------------~l~~~L~~L~l~~c~~~~~-~~~~--~~~~~~L~~L~l~~c~~l~~l-~~~-~~~l~~L~~L~l~~~~ 148 (357)
.+++ |++|++++| .++. ++.. .+.+.+|++|++++ +.+..+ |.. +..+++|++|++++|.
T Consensus 89 n~l~~~~~~~~~~l~~-L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~l~~L~~L~L~~n~ 165 (455)
T 3v47_A 89 NQFLQLETGAFNGLAN-LEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRD-NNIKKIQPASFFLNMRRFHVLDLTFNK 165 (455)
T ss_dssp CTTCEECTTTTTTCTT-CCEEECTTS-CCBTHHHHSSTTTTCTTCCEEECCS-SBCCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred CccCccChhhccCccc-CCEEeCCCC-CCCccccCcccccCcccCCEEECCC-CccCccCcccccCCCCcccEEeCCCCc
Confidence 5677 999999985 4443 3433 34566799999988 556655 444 6788999999998865
Q ss_pred CccccCCCCc----------------------------------CcccccEEEeecCCCccccccccc------------
Q 043298 149 NLVSFPEGGL----------------------------------PCAKLRRLGIYDCERLEALPKGLH------------ 182 (357)
Q Consensus 149 ~l~~~~~~~~----------------------------------~l~~L~~L~l~~~~~~~~~~~~~~------------ 182 (357)
.....+..+. .+++|+.|++++|......+..+.
T Consensus 166 l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ 245 (455)
T 3v47_A 166 VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI 245 (455)
T ss_dssp BSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEE
T ss_pred ccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEe
Confidence 3333333332 235778888877654332222111
Q ss_pred ---------------------------CCCCCceEEecC-ccCCccC--CCCCCccceEEecCCcchhhhhhhcccccCC
Q 043298 183 ---------------------------NLSSLQELTIGG-ELPSLEE--DGLPTNLHSLDIWGNMEIWKSMIERGRGFHR 232 (357)
Q Consensus 183 ---------------------------~l~~L~~L~l~~-~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~ 232 (357)
..++|++|++++ .+..+.. ...+++|++|++++| .+...++. .+..
T Consensus 246 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~---~~~~ 321 (455)
T 3v47_A 246 LSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN-EINKIDDN---AFWG 321 (455)
T ss_dssp CTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTT---TTTT
T ss_pred eccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCC-cccccChh---HhcC
Confidence 124677777776 4444322 455678888888884 44444432 5677
Q ss_pred CCCcceEEeecCCCCCCcCccccccccCCCCCCCCccEEEcCccccCccc-ccccccccccCeeccccCCCCcccCCCC-
Q 043298 233 FSSLGHLKIGGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLEHL-SSSIVDLQNLTSLGLYNCPKLKYFPEKG- 310 (357)
Q Consensus 233 ~~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i-~~~~~~~~~L~~L~l~~c~~l~~l~~~~- 310 (357)
+++|+.|++++ +.+..++... +..+++|++|+++++ .+..+ |..+..+++|++|++.+ ++++.++...
T Consensus 322 l~~L~~L~Ls~--N~l~~~~~~~------~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~ 391 (455)
T 3v47_A 322 LTHLLKLNLSQ--NFLGSIDSRM------FENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDT-NQLKSVPDGIF 391 (455)
T ss_dssp CTTCCEEECCS--SCCCEECGGG------GTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS-SCCSCCCTTTT
T ss_pred cccCCEEECCC--CccCCcChhH------hcCcccCCEEECCCC-cccccChhhccccccccEEECCC-CccccCCHhHh
Confidence 88888888888 3555553322 246788899999885 55555 66778888899999888 4677777643
Q ss_pred -CccCCceEEecCC
Q 043298 311 -LPSSLLLLWIEGC 323 (357)
Q Consensus 311 -~~~~L~~L~i~~c 323 (357)
.+++|+.|+++++
T Consensus 392 ~~l~~L~~L~l~~N 405 (455)
T 3v47_A 392 DRLTSLQKIWLHTN 405 (455)
T ss_dssp TTCTTCCEEECCSS
T ss_pred ccCCcccEEEccCC
Confidence 3678888988764
No 4
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=6.3e-23 Score=194.71 Aligned_cols=287 Identities=17% Similarity=0.170 Sum_probs=191.7
Q ss_pred ccccccccccccccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCC-CCCCcccceecc--
Q 043298 9 SLTYIAAVQLPSSLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKY-ELPATLESLEVG-- 85 (357)
Q Consensus 9 ~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~-~~~~~L~~L~l~-- 85 (357)
+++.+|. .++++++.|+++++. ++.++.. .+..++ +|++|+++++ .++.+.|.. ..+++|+.|+++
T Consensus 22 ~l~~ip~-~~~~~l~~L~L~~n~-l~~~~~~------~~~~l~--~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 22 RFVAVPE-GIPTETRLLDLGKNR-IKTLNQD------EFASFP--HLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp CCSSCCS-CCCTTCSEEECCSSC-CCEECTT------TTTTCT--TCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcCcCCC-CCCCCCcEEECCCCc-cceECHh------HccCCC--CCCEEECCCC-ccCEeChhhhhCCccCCEEECCCC
Confidence 4556664 457899999999987 8887765 577788 9999999984 677763333 556677777765
Q ss_pred -----------cCCCcceEEEecCCCCchhch-hccCCCCcccEEEcccccCcccc-CccccCccccceeecccCCCccc
Q 043298 86 -----------NLPSSVKVLDVYGCPKLESIA-ERLDNNTSLETISIYNCENLKIL-PSGLHKLHQLREIWIRECGNLVS 152 (357)
Q Consensus 86 -----------~l~~~L~~L~l~~c~~~~~~~-~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~~~~l~~ 152 (357)
.+++ |++|++++ +.++.++ ..+..+.+|++|++++ +.+..+ +..+.++++|+.|++++| .+..
T Consensus 91 ~l~~~~~~~~~~l~~-L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~ 166 (477)
T 2id5_A 91 RLKLIPLGVFTGLSN-LTKLDISE-NKIVILLDYMFQDLYNLKSLEVGD-NDLVYISHRAFSGLNSLEQLTLEKC-NLTS 166 (477)
T ss_dssp CCCSCCTTSSTTCTT-CCEEECTT-SCCCEECTTTTTTCTTCCEEEECC-TTCCEECTTSSTTCTTCCEEEEESC-CCSS
T ss_pred cCCccCcccccCCCC-CCEEECCC-CccccCChhHccccccCCEEECCC-CccceeChhhccCCCCCCEEECCCC-cCcc
Confidence 4456 77777777 3444443 2334455677777777 455543 345667777777777774 4444
Q ss_pred cCC-CCcCcccccEEEeecCCCcccccccccCCCCCceEEecC--ccCCccC-CCCCCccceEEecCCcchhhhhhhccc
Q 043298 153 FPE-GGLPCAKLRRLGIYDCERLEALPKGLHNLSSLQELTIGG--ELPSLEE-DGLPTNLHSLDIWGNMEIWKSMIERGR 228 (357)
Q Consensus 153 ~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~--~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~ 228 (357)
++. .+..+++|+.|++++|......+..+..+++|++|++.+ ....++. .....+|+.|++++| .++.++..
T Consensus 167 ~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~--- 242 (477)
T 2id5_A 167 IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYL--- 242 (477)
T ss_dssp CCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS-CCCSCCHH---
T ss_pred cChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCC-cccccCHH---
Confidence 543 355667777777777554444444677777777777776 3333333 222347888888874 45555432
Q ss_pred ccCCCCCcceEEeecCCCCCCcCccccccccCCCCCCCCccEEEcCccccCccc-ccccccccccCeeccccCCCCcccC
Q 043298 229 GFHRFSSLGHLKIGGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLEHL-SSSIVDLQNLTSLGLYNCPKLKYFP 307 (357)
Q Consensus 229 ~l~~~~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i-~~~~~~~~~L~~L~l~~c~~l~~l~ 307 (357)
.+..+++|+.|++++ +.+..++... +..+++|++|+++++ .+..+ +..+..+++|++|+++++ +++.++
T Consensus 243 ~~~~l~~L~~L~Ls~--n~l~~~~~~~------~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~ 312 (477)
T 2id5_A 243 AVRHLVYLRFLNLSY--NPISTIEGSM------LHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGN-QLTTLE 312 (477)
T ss_dssp HHTTCTTCCEEECCS--SCCCEECTTS------CTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEECCSS-CCSCCC
T ss_pred HhcCccccCeeECCC--CcCCccChhh------ccccccCCEEECCCC-ccceECHHHhcCcccCCEEECCCC-cCceeC
Confidence 467788888888888 4455555432 356788999999984 55554 566788899999999984 777777
Q ss_pred CCC--CccCCceEEecCCh
Q 043298 308 EKG--LPSSLLLLWIEGCP 324 (357)
Q Consensus 308 ~~~--~~~~L~~L~i~~c~ 324 (357)
... .+++|+.|++++++
T Consensus 313 ~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 313 ESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp GGGBSCGGGCCEEECCSSC
T ss_pred HhHcCCCcccCEEEccCCC
Confidence 643 35789999987654
No 5
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=1.6e-22 Score=186.92 Aligned_cols=271 Identities=18% Similarity=0.164 Sum_probs=174.8
Q ss_pred ccccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccC-C-CCCCcccceecc-----------
Q 043298 19 PSSLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSK-Y-ELPATLESLEVG----------- 85 (357)
Q Consensus 19 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~-~~~~~L~~L~l~----------- 85 (357)
+++++.|+++++. ++.+|.. ++..++ +|++|+++++ .++.+ +. . ..+++|+.|+++
T Consensus 44 l~~l~~l~l~~~~-l~~l~~~------~~~~l~--~L~~L~L~~n-~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 112 (390)
T 3o6n_A 44 LNNQKIVTFKNST-MRKLPAA------LLDSFR--QVELLNLNDL-QIEEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHV 112 (390)
T ss_dssp GCCCSEEEEESCE-ESEECTH------HHHHCC--CCSEEECTTS-CCCEE-CTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred cCCceEEEecCCc-hhhCChh------Hhcccc--cCcEEECCCC-ccccc-ChhhccCCCCcCEEECCCCCCCcCCHHH
Confidence 4555555555554 5555544 334444 5556665553 34444 32 2 445555555554
Q ss_pred --cCCCcceEEEecCCCCchhchhcc-CCCCcccEEEcccccCccccC-ccccCccccceeecccCCCccccCCCCcCcc
Q 043298 86 --NLPSSVKVLDVYGCPKLESIAERL-DNNTSLETISIYNCENLKILP-SGLHKLHQLREIWIRECGNLVSFPEGGLPCA 161 (357)
Q Consensus 86 --~l~~~L~~L~l~~c~~~~~~~~~~-~~~~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~ 161 (357)
.+++ |++|++++ +.++.+|... +.+.+|++|++++ +.++.++ ..+..+++|+.|++++| .++.++ ...++
T Consensus 113 ~~~l~~-L~~L~L~~-n~l~~l~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~--~~~l~ 186 (390)
T 3o6n_A 113 FQNVPL-LTVLVLER-NDLSSLPRGIFHNTPKLTTLSMSN-NNLERIEDDTFQATTSLQNLQLSSN-RLTHVD--LSLIP 186 (390)
T ss_dssp TTTCTT-CCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTSSCTTCCEEECCSS-CCSBCC--GGGCT
T ss_pred hcCCCC-CCEEECCC-CccCcCCHHHhcCCCCCcEEECCC-CccCccChhhccCCCCCCEEECCCC-cCCccc--ccccc
Confidence 4556 88888887 4667776654 3456688888877 4555553 44677788888888774 334332 22334
Q ss_pred cccEEEeecCC------------------CcccccccccCCCCCceEEecC-ccCCccCCCCCCccceEEecCCcchhhh
Q 043298 162 KLRRLGIYDCE------------------RLEALPKGLHNLSSLQELTIGG-ELPSLEEDGLPTNLHSLDIWGNMEIWKS 222 (357)
Q Consensus 162 ~L~~L~l~~~~------------------~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 222 (357)
+|+.+++++|. .+..++.. ..++|+.|++++ .++..+....+++|++|++++| .+...
T Consensus 187 ~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n-~l~~~ 263 (390)
T 3o6n_A 187 SLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYN-ELEKI 263 (390)
T ss_dssp TCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSS-CCCEE
T ss_pred ccceeecccccccccCCCCcceEEECCCCeeeecccc--ccccccEEECCCCCCcccHHHcCCCCccEEECCCC-cCCCc
Confidence 45444444432 22233322 246788888888 6666666666788999999885 45544
Q ss_pred hhhcccccCCCCCcceEEeecCCCCCCcCccccccccCCCCCCCCccEEEcCccccCcccccccccccccCeeccccCCC
Q 043298 223 MIERGRGFHRFSSLGHLKIGGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLEHLSSSIVDLQNLTSLGLYNCPK 302 (357)
Q Consensus 223 ~~~~~~~l~~~~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~ 302 (357)
.+. .+..+++|+.|++++ +.+..++... ..+++|++|+++++ .+..+|..+..+++|++|++.+| .
T Consensus 264 ~~~---~~~~l~~L~~L~L~~--n~l~~~~~~~-------~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N-~ 329 (390)
T 3o6n_A 264 MYH---PFVKMQRLERLYISN--NRLVALNLYG-------QPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHN-S 329 (390)
T ss_dssp ESG---GGTTCSSCCEEECCS--SCCCEEECSS-------SCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSS-C
T ss_pred Chh---HccccccCCEEECCC--CcCcccCccc-------CCCCCCCEEECCCC-cceecCccccccCcCCEEECCCC-c
Confidence 432 567889999999998 5666666544 46789999999995 67788877788899999999984 5
Q ss_pred CcccCCCCCccCCceEEecCCh
Q 043298 303 LKYFPEKGLPSSLLLLWIEGCP 324 (357)
Q Consensus 303 l~~l~~~~~~~~L~~L~i~~c~ 324 (357)
++.++. ..+++|+.|++++++
T Consensus 330 i~~~~~-~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 330 IVTLKL-STHHTLKNLTLSHND 350 (390)
T ss_dssp CCCCCC-CTTCCCSEEECCSSC
T ss_pred cceeCc-hhhccCCEEEcCCCC
Confidence 777764 445799999998864
No 6
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=9.8e-23 Score=199.88 Aligned_cols=290 Identities=17% Similarity=0.222 Sum_probs=181.8
Q ss_pred Ccccccccc-ccccccceeeccccccccc------------------ccccccccccCCC--CCCcCCccEEEEecCCCc
Q 043298 8 RSLTYIAAV-QLPSSLKNLQIRDCYNIRT------------------LTVEEGIQCSSGR--RYTSSLLEELFVFNCDSL 66 (357)
Q Consensus 8 ~~l~~~~~~-~~~~~L~~L~l~~~~~l~~------------------~~~~~~~~~~~~~--~~~~~~L~~L~l~~c~~l 66 (357)
.+++.+|.. +.+++|++|+++++. ++. +|.. +. .++ +|++|++++|...
T Consensus 193 n~l~~ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~-------l~~~~l~--~L~~L~L~~n~l~ 262 (636)
T 4eco_A 193 NNITFVSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTED-------LKWDNLK--DLTDVEVYNCPNL 262 (636)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSC-------CCGGGCT--TCCEEEEECCTTC
T ss_pred CCCccCCHHHhcccCCCEEECcCCc-cccccccccccccccchhcccCchh-------hhhcccC--CCCEEEecCCcCC
Confidence 356666652 348999999999998 777 8876 34 777 9999999997655
Q ss_pred cccccCC-CCCCcccceecc--c-C------------------CCcceEEEecCCCCchhchh--ccCCCCcccEEEccc
Q 043298 67 TCIFSKY-ELPATLESLEVG--N-L------------------PSSVKVLDVYGCPKLESIAE--RLDNNTSLETISIYN 122 (357)
Q Consensus 67 ~~~~~~~-~~~~~L~~L~l~--~-l------------------~~~L~~L~l~~c~~~~~~~~--~~~~~~~L~~L~l~~ 122 (357)
..+ |.. ..+++|+.|+++ . + ++ |++|++++ +.++.+|. .++.+.+|++|++++
T Consensus 263 ~~~-p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~-L~~L~L~~-n~l~~ip~~~~l~~l~~L~~L~L~~ 339 (636)
T 4eco_A 263 TKL-PTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEK-IQIIYIGY-NNLKTFPVETSLQKMKKLGMLECLY 339 (636)
T ss_dssp SSC-CTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGT-CCEEECCS-SCCSSCCCHHHHTTCTTCCEEECCS
T ss_pred ccC-hHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCC-CCEEECCC-CcCCccCchhhhccCCCCCEEeCcC
Confidence 555 765 778888888876 1 1 56 88888888 46667877 565667788888888
Q ss_pred ccCcc-ccCccccCccccceeecccCCCccccCCCCcCccc-ccEEEeecCCCcccccccccCCC--CCceEEecC-ccC
Q 043298 123 CENLK-ILPSGLHKLHQLREIWIRECGNLVSFPEGGLPCAK-LRRLGIYDCERLEALPKGLHNLS--SLQELTIGG-ELP 197 (357)
Q Consensus 123 c~~l~-~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~l~--~L~~L~l~~-~~~ 197 (357)
+.+. .+| .++.+++|+.|++++| .+..+|..+..+++ |++|++++|. +..+|..+..++ +|++|++++ .+.
T Consensus 340 -N~l~g~ip-~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~ 415 (636)
T 4eco_A 340 -NQLEGKLP-AFGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIG 415 (636)
T ss_dssp -CCCEEECC-CCEEEEEESEEECCSS-EEEECCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSSCTT
T ss_pred -CcCccchh-hhCCCCCCCEEECCCC-ccccccHhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcCCcCC
Confidence 5566 777 7777888888888774 45577777777777 8888887755 446776665543 677777777 443
Q ss_pred Cc-cC-CC-------CCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeecCCCCCCcCccccccc-cCCCCCCCC
Q 043298 198 SL-EE-DG-------LPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDMVSFPLEDKRL-GTALPLPAS 267 (357)
Q Consensus 198 ~~-~~-~~-------~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~~~~~~~~~-~~~~~~~~~ 267 (357)
.. |. .. .+++|+.|++++| .++.++.. .+..+++|+.|++++ +.+..++...... ......+++
T Consensus 416 ~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~---~~~~l~~L~~L~Ls~--N~l~~i~~~~~~~~~~~~~~l~~ 489 (636)
T 4eco_A 416 SVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKE---LFSTGSPLSSINLMG--NMLTEIPKNSLKDENENFKNTYL 489 (636)
T ss_dssp TTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTH---HHHTTCCCSEEECCS--SCCSBCCSSSSEETTEECTTGGG
T ss_pred CcchhhhcccccccccCCCCCEEECcCC-ccCcCCHH---HHccCCCCCEEECCC--CCCCCcCHHHhccccccccccCC
Confidence 32 11 11 3456777777774 34444432 344566677777766 3444555432100 000001125
Q ss_pred ccEEEcCccccCcccccccc--cccccCeeccccCCCCcccCCC-CCccCCceEEecC
Q 043298 268 LTSLWIEDFPNLEHLSSSIV--DLQNLTSLGLYNCPKLKYFPEK-GLPSSLLLLWIEG 322 (357)
Q Consensus 268 L~~L~l~~c~~l~~i~~~~~--~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~ 322 (357)
|+.|++++ +.+..+|..+. .+++|++|++.++ +++.+|.. +.+++|+.|++++
T Consensus 490 L~~L~Ls~-N~l~~lp~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~Ls~ 545 (636)
T 4eco_A 490 LTSIDLRF-NKLTKLSDDFRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRN 545 (636)
T ss_dssp CCEEECCS-SCCCBCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCSSCCEEECCS
T ss_pred ccEEECcC-CcCCccChhhhhccCCCcCEEECCCC-CCCCcChhhhcCCCCCEEECCC
Confidence 66666665 34455555444 5566666666653 44444431 1245555555544
No 7
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=7.4e-23 Score=186.15 Aligned_cols=284 Identities=17% Similarity=0.187 Sum_probs=223.6
Q ss_pred ceeccCCccccccccccccccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCCCCCCcccc
Q 043298 2 LSIKHCRSLTYIAAVQLPSSLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKYELPATLES 81 (357)
Q Consensus 2 l~~~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~ 81 (357)
|++.++ .++.++....+++|++|++++|. ++.++. +..++ +|++|++++| .++.+ +....+++|+.
T Consensus 49 L~l~~~-~i~~~~~~~~~~~L~~L~l~~n~-i~~~~~--------~~~l~--~L~~L~L~~n-~i~~~-~~~~~l~~L~~ 114 (347)
T 4fmz_A 49 LVVAGE-KVASIQGIEYLTNLEYLNLNGNQ-ITDISP--------LSNLV--KLTNLYIGTN-KITDI-SALQNLTNLRE 114 (347)
T ss_dssp EECCSS-CCCCCTTGGGCTTCCEEECCSSC-CCCCGG--------GTTCT--TCCEEECCSS-CCCCC-GGGTTCTTCSE
T ss_pred EEEeCC-ccccchhhhhcCCccEEEccCCc-cccchh--------hhcCC--cCCEEEccCC-cccCc-hHHcCCCcCCE
Confidence 455554 45666666679999999999986 777764 26777 9999999995 67777 76688899999
Q ss_pred eecc-----------cCCCcceEEEecCCCCchhchhccCCCCcccEEEcccccCccccCccccCccccceeecccCCCc
Q 043298 82 LEVG-----------NLPSSVKVLDVYGCPKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREIWIRECGNL 150 (357)
Q Consensus 82 L~l~-----------~l~~~L~~L~l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l 150 (357)
|+++ .+++ |++|++++|.....++... .+.+|++|++++ +.+..++. +..+++|++|++++| .+
T Consensus 115 L~l~~n~i~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~-~l~~L~~L~l~~-~~~~~~~~-~~~l~~L~~L~l~~n-~l 189 (347)
T 4fmz_A 115 LYLNEDNISDISPLANLTK-MYSLNLGANHNLSDLSPLS-NMTGLNYLTVTE-SKVKDVTP-IANLTDLYSLSLNYN-QI 189 (347)
T ss_dssp EECTTSCCCCCGGGTTCTT-CCEEECTTCTTCCCCGGGT-TCTTCCEEECCS-SCCCCCGG-GGGCTTCSEEECTTS-CC
T ss_pred EECcCCcccCchhhccCCc-eeEEECCCCCCcccccchh-hCCCCcEEEecC-CCcCCchh-hccCCCCCEEEccCC-cc
Confidence 9998 6778 9999999987777766643 667799999999 45666654 788999999999996 45
Q ss_pred cccCCCCcCcccccEEEeecCCCcccccccccCCCCCceEEecC-ccCCccCCCCCCccceEEecCCcchhhhhhhcccc
Q 043298 151 VSFPEGGLPCAKLRRLGIYDCERLEALPKGLHNLSSLQELTIGG-ELPSLEEDGLPTNLHSLDIWGNMEIWKSMIERGRG 229 (357)
Q Consensus 151 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 229 (357)
..++. +..+++|+.+++++|. +...+. +..+++|++|++++ .++.++....+++|++|++++| .+..++ .
T Consensus 190 ~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~~-----~ 260 (347)
T 4fmz_A 190 EDISP-LASLTSLHYFTAYVNQ-ITDITP-VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTN-QISDIN-----A 260 (347)
T ss_dssp CCCGG-GGGCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCCG-----G
T ss_pred ccccc-ccCCCccceeecccCC-CCCCch-hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCC-ccCCCh-----h
Confidence 55554 6678899999999865 444433 88899999999999 8887777777899999999996 555554 3
Q ss_pred cCCCCCcceEEeecCCCCCCcCccccccccCCCCCCCCccEEEcCccccCcccccccccccccCeeccccCCCCcccCCC
Q 043298 230 FHRFSSLGHLKIGGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLEHLSSSIVDLQNLTSLGLYNCPKLKYFPEK 309 (357)
Q Consensus 230 l~~~~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~ 309 (357)
+..+++|+.|++++ | .+..++.. ..+++|+.|++++|.--...+..+..+++|++|++++| .++.+++.
T Consensus 261 ~~~l~~L~~L~l~~-n-~l~~~~~~--------~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~ 329 (347)
T 4fmz_A 261 VKDLTKLKMLNVGS-N-QISDISVL--------NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN-HITDIRPL 329 (347)
T ss_dssp GTTCTTCCEEECCS-S-CCCCCGGG--------GGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSS-SCCCCGGG
T ss_pred HhcCCCcCEEEccC-C-ccCCChhh--------cCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCC-ccccccCh
Confidence 68899999999999 4 66666542 37789999999997543445566788999999999996 47776665
Q ss_pred CCccCCceEEecCCh
Q 043298 310 GLPSSLLLLWIEGCP 324 (357)
Q Consensus 310 ~~~~~L~~L~i~~c~ 324 (357)
..+++|++|++++|+
T Consensus 330 ~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 330 ASLSKMDSADFANQV 344 (347)
T ss_dssp GGCTTCSEESSSCC-
T ss_pred hhhhccceeehhhhc
Confidence 557899999999875
No 8
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.90 E-value=2e-22 Score=193.24 Aligned_cols=57 Identities=21% Similarity=0.395 Sum_probs=39.9
Q ss_pred CCccEEEcCccccCcccccccccccccCeeccccCCCCcccCCCC--CccCCceEEecCCh
Q 043298 266 ASLTSLWIEDFPNLEHLSSSIVDLQNLTSLGLYNCPKLKYFPEKG--LPSSLLLLWIEGCP 324 (357)
Q Consensus 266 ~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~i~~c~ 324 (357)
++|+.|++++ +.++.+|..+..+++|++|++++| +++.+|... .+++|++|++++++
T Consensus 421 ~~L~~L~Ls~-N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 421 PRIKVLDLHS-NKIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp TTCCEEECCS-SCCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCCEEECCC-CcccccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEECcCCC
Confidence 5777777777 356677776667788888888774 677776642 25678888877654
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=6.1e-23 Score=201.35 Aligned_cols=281 Identities=15% Similarity=0.147 Sum_probs=183.3
Q ss_pred ccccceeecccccccc--cccccccccccCCCCCCcCCccEEEEecCCCccccccC--C-CCCCcccceecc--------
Q 043298 19 PSSLKNLQIRDCYNIR--TLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSK--Y-ELPATLESLEVG-------- 85 (357)
Q Consensus 19 ~~~L~~L~l~~~~~l~--~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~--~-~~~~~L~~L~l~-------- 85 (357)
+++|++|++++|..++ .+|..++.-. .+..++ +|++|+++++ .++.+ |. . ..+++|+.|+++
T Consensus 272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~-~~~~l~--~L~~L~L~~n-~l~~i-p~~~~l~~l~~L~~L~L~~N~l~g~i 346 (636)
T 4eco_A 272 LPEMQLINVACNRGISGEQLKDDWQALA-DAPVGE--KIQIIYIGYN-NLKTF-PVETSLQKMKKLGMLECLYNQLEGKL 346 (636)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHH-HSGGGG--TCCEEECCSS-CCSSC-CCHHHHTTCTTCCEEECCSCCCEEEC
T ss_pred CCCCCEEECcCCCCCccccchHHHHhhh-ccccCC--CCCEEECCCC-cCCcc-CchhhhccCCCCCEEeCcCCcCccch
Confidence 6777777777765344 3555410000 001124 7777777774 45565 66 3 566677777665
Q ss_pred ----cCCCcceEEEecCCCCchhchhccCCCCc-ccEEEcccccCccccCccccCcc--ccceeecccCCCccccCCCCc
Q 043298 86 ----NLPSSVKVLDVYGCPKLESIAERLDNNTS-LETISIYNCENLKILPSGLHKLH--QLREIWIRECGNLVSFPEGGL 158 (357)
Q Consensus 86 ----~l~~~L~~L~l~~c~~~~~~~~~~~~~~~-L~~L~l~~c~~l~~l~~~~~~l~--~L~~L~l~~~~~l~~~~~~~~ 158 (357)
.+++ |++|++++ +.++.+|..++.+.+ |++|++++ +.++.+|..+..++ +|+.|++++|......|..+.
T Consensus 347 p~~~~l~~-L~~L~L~~-N~l~~lp~~l~~l~~~L~~L~Ls~-N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 423 (636)
T 4eco_A 347 PAFGSEIK-LASLNLAY-NQITEIPANFCGFTEQVENLSFAH-NKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD 423 (636)
T ss_dssp CCCEEEEE-ESEEECCS-SEEEECCTTSEEECTTCCEEECCS-SCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSC
T ss_pred hhhCCCCC-CCEEECCC-CccccccHhhhhhcccCcEEEccC-CcCcccchhhhhcccCccCEEECcCCcCCCcchhhhc
Confidence 2345 77777777 456666665544555 77777777 55667776665543 777777777655444554444
Q ss_pred -------CcccccEEEeecCCCccccccc-ccCCCCCceEEecC-ccCCccCCCC--C-------CccceEEecCCcchh
Q 043298 159 -------PCAKLRRLGIYDCERLEALPKG-LHNLSSLQELTIGG-ELPSLEEDGL--P-------TNLHSLDIWGNMEIW 220 (357)
Q Consensus 159 -------~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~-~~~~~~~~~~--~-------~~L~~L~l~~~~~l~ 220 (357)
.+++|+.|++++|. +..+|.. +..+++|++|++++ .++.+|...+ . ++|+.|++++| .++
T Consensus 424 ~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~ 501 (636)
T 4eco_A 424 PLDPTPFKGINVSSINLSNNQ-ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLT 501 (636)
T ss_dssp TTCSSCCCCCCEEEEECCSSC-CCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSS-CCC
T ss_pred ccccccccCCCCCEEECcCCc-cCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCC-cCC
Confidence 56678888887754 3455554 34578888888888 6666665322 1 17888888884 455
Q ss_pred hhhhhcccccC--CCCCcceEEeecCCCCCCcCccccccccCCCCCCCCccEEEcCc------cccCccccccccccccc
Q 043298 221 KSMIERGRGFH--RFSSLGHLKIGGCDDDMVSFPLEDKRLGTALPLPASLTSLWIED------FPNLEHLSSSIVDLQNL 292 (357)
Q Consensus 221 ~~~~~~~~~l~--~~~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~------c~~l~~i~~~~~~~~~L 292 (357)
.++. .+. .+++|+.|++++ +.+..+|... ..+++|+.|++++ +.....+|..+..+++|
T Consensus 502 ~lp~----~~~~~~l~~L~~L~Ls~--N~l~~ip~~~-------~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L 568 (636)
T 4eco_A 502 KLSD----DFRATTLPYLVGIDLSY--NSFSKFPTQP-------LNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSL 568 (636)
T ss_dssp BCCG----GGSTTTCTTCCEEECCS--SCCSSCCCGG-------GGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSC
T ss_pred ccCh----hhhhccCCCcCEEECCC--CCCCCcChhh-------hcCCCCCEEECCCCcccccCcccccChHHHhcCCCC
Confidence 5553 233 788888888888 5566677665 4678899999854 33355778788888999
Q ss_pred CeeccccCCCCcccCCCCCccCCceEEecCCh
Q 043298 293 TSLGLYNCPKLKYFPEKGLPSSLLLLWIEGCP 324 (357)
Q Consensus 293 ~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~ 324 (357)
++|++++| +++.+|.. +.++|+.|++++|+
T Consensus 569 ~~L~Ls~N-~l~~ip~~-~~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 569 TQLQIGSN-DIRKVNEK-ITPNISVLDIKDNP 598 (636)
T ss_dssp CEEECCSS-CCCBCCSC-CCTTCCEEECCSCT
T ss_pred CEEECCCC-cCCccCHh-HhCcCCEEECcCCC
Confidence 99999885 56888774 44789999999885
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.89 E-value=2.9e-22 Score=200.94 Aligned_cols=293 Identities=17% Similarity=0.186 Sum_probs=188.1
Q ss_pred ccccccc-cccccccceeeccccccccc------------------ccccccccccCCCCCCcCCccEEEEecCCCcccc
Q 043298 9 SLTYIAA-VQLPSSLKNLQIRDCYNIRT------------------LTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCI 69 (357)
Q Consensus 9 ~l~~~~~-~~~~~~L~~L~l~~~~~l~~------------------~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 69 (357)
+++.+|. ...+++|+.|++++|. +.. +|..+ .|..++ +|++|++++|.....+
T Consensus 436 ~L~~IP~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l-----~f~~L~--~L~~L~Ls~N~l~~~i 507 (876)
T 4ecn_A 436 RITFISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEEL-----SWSNLK--DLTDVELYNCPNMTQL 507 (876)
T ss_dssp EEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCC-----CGGGCT--TCCEEEEESCTTCCSC
T ss_pred cccchhHHHhcCCCCCEEECcCCc-CCCCcccccccccccccccccCChhh-----hhccCC--CCCEEECcCCCCCccC
Confidence 4455654 2348999999999988 776 78762 133777 9999999997655555
Q ss_pred ccCC-CCCCcccceeccc---C-------------------CCcceEEEecCCCCchhchh--ccCCCCcccEEEccccc
Q 043298 70 FSKY-ELPATLESLEVGN---L-------------------PSSVKVLDVYGCPKLESIAE--RLDNNTSLETISIYNCE 124 (357)
Q Consensus 70 ~~~~-~~~~~L~~L~l~~---l-------------------~~~L~~L~l~~c~~~~~~~~--~~~~~~~L~~L~l~~c~ 124 (357)
|.. ..+++|+.|+++. + ++ |++|++++ +.++.+|. .++.+.+|+.|++++ +
T Consensus 508 -P~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~-L~~L~Ls~-N~L~~ip~~~~l~~L~~L~~L~Ls~-N 583 (876)
T 4ecn_A 508 -PDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPK-IQIFYMGY-NNLEEFPASASLQKMVKLGLLDCVH-N 583 (876)
T ss_dssp -CGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTT-CCEEECCS-SCCCBCCCHHHHTTCTTCCEEECTT-S
T ss_pred -hHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCC-ccEEEeeC-CcCCccCChhhhhcCCCCCEEECCC-C
Confidence 755 6677888888762 1 26 88888888 46667877 555667788888888 5
Q ss_pred CccccCccccCccccceeecccCCCccccCCCCcCccc-ccEEEeecCCCcccccccccCCCC--CceEEecC-ccCCc-
Q 043298 125 NLKILPSGLHKLHQLREIWIRECGNLVSFPEGGLPCAK-LRRLGIYDCERLEALPKGLHNLSS--LQELTIGG-ELPSL- 199 (357)
Q Consensus 125 ~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~l~~--L~~L~l~~-~~~~~- 199 (357)
.+..+| .++.+++|+.|++++|. +..+|..+..+++ |+.|++++|. +..+|..+..++. |+.|++++ .+...
T Consensus 584 ~l~~lp-~~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~i 660 (876)
T 4ecn_A 584 KVRHLE-AFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKIGSEG 660 (876)
T ss_dssp CCCBCC-CCCTTSEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSSCTTTTS
T ss_pred Ccccch-hhcCCCcceEEECcCCc-cccchHHHhhccccCCEEECcCCC-CCcCchhhhccccCCCCEEECcCCcCCCcc
Confidence 667777 77888888888888854 5578877777888 8888888865 4477776665543 88888877 44321
Q ss_pred cCC----C--CCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeecCCCCCCcCcccccccc-CCCCCCCCccEEE
Q 043298 200 EED----G--LPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDMVSFPLEDKRLG-TALPLPASLTSLW 272 (357)
Q Consensus 200 ~~~----~--~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~~~~~~~~~~-~~~~~~~~L~~L~ 272 (357)
|.. . ..++|+.|++++| .+..++.. .+..+++|+.|++++ +.+..++....... .....+++|+.|+
T Consensus 661 p~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~~---~~~~l~~L~~L~Ls~--N~L~~ip~~~~~~~~~~l~nl~~L~~L~ 734 (876)
T 4ecn_A 661 RNISCSMDDYKGINASTVTLSYN-EIQKFPTE---LFATGSPISTIILSN--NLMTSIPENSLKPKDGNYKNTYLLTTID 734 (876)
T ss_dssp SSCSSCTTTCCCCCEEEEECCSS-CCCSCCHH---HHHTTCCCSEEECCS--CCCSCCCTTSSSCTTSCCTTGGGCCEEE
T ss_pred ccchhhhccccCCCcCEEEccCC-cCCccCHH---HHccCCCCCEEECCC--CcCCccChHHhccccccccccCCccEEE
Confidence 111 1 2346777777774 34444432 334667777777777 35555555431000 0001122667777
Q ss_pred cCccccCcccccccc--cccccCeeccccCCCCcccCCC-CCccCCceEEecCCh
Q 043298 273 IEDFPNLEHLSSSIV--DLQNLTSLGLYNCPKLKYFPEK-GLPSSLLLLWIEGCP 324 (357)
Q Consensus 273 l~~c~~l~~i~~~~~--~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~ 324 (357)
+++| .+..+|..+. .+++|+.|++++| .++.+|.. +.+++|+.|++++++
T Consensus 735 Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N~ 787 (876)
T 4ecn_A 735 LRFN-KLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQR 787 (876)
T ss_dssp CCSS-CCCCCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCTTCCEEECCCCB
T ss_pred CCCC-CCccchHHhhhccCCCcCEEEeCCC-CCCccchhhhcCCCCCEEECCCCC
Confidence 7663 5556665554 6666777766663 45555432 224566666665533
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.89 E-value=6e-22 Score=193.44 Aligned_cols=60 Identities=30% Similarity=0.301 Sum_probs=33.8
Q ss_pred cccCCCCCceEEecC-ccCCccC-CCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeec
Q 043298 180 GLHNLSSLQELTIGG-ELPSLEE-DGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGG 243 (357)
Q Consensus 180 ~~~~l~~L~~L~l~~-~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~ 243 (357)
.++.+++|++|++++ .++.+|. ...+++|++|++++| .+...++. .+..+++|+.|++++
T Consensus 273 ~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n-~l~~~~~~---~~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 273 TFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSAN-KFENLCQI---SASNFPSLTHLSIKG 334 (606)
T ss_dssp TTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTC-CCSBGGGG---CGGGCTTCSEEECCS
T ss_pred HhccccCCCEEeccCCccCCCChhhcccccCCEEECccC-CcCcCchh---hhhccCcCCEEECCC
Confidence 356666677777666 5555554 344566666666664 33333322 345556666666665
No 12
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=2.2e-22 Score=190.38 Aligned_cols=304 Identities=17% Similarity=0.187 Sum_probs=155.8
Q ss_pred eeccCCccccccccccccccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCCCCCCcccce
Q 043298 3 SIKHCRSLTYIAAVQLPSSLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKYELPATLESL 82 (357)
Q Consensus 3 ~~~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L 82 (357)
++.++ +++.++....+++|++|++++|. ++.++. +..++ +|++|+++++ .++.+ ++...+++|+.|
T Consensus 52 ~l~~~-~i~~l~~~~~l~~L~~L~Ls~n~-l~~~~~--------~~~l~--~L~~L~l~~n-~l~~~-~~~~~l~~L~~L 117 (466)
T 1o6v_A 52 QADRL-GIKSIDGVEYLNNLTQINFSNNQ-LTDITP--------LKNLT--KLVDILMNNN-QIADI-TPLANLTNLTGL 117 (466)
T ss_dssp ECCSS-CCCCCTTGGGCTTCCEEECCSSC-CCCCGG--------GTTCT--TCCEEECCSS-CCCCC-GGGTTCTTCCEE
T ss_pred ecCCC-CCccCcchhhhcCCCEEECCCCc-cCCchh--------hhccc--cCCEEECCCC-ccccC-hhhcCCCCCCEE
Confidence 34444 34555555557777888887775 666553 25555 6777777764 45555 434555666666
Q ss_pred ecc-----------cCCCcceEEEecCCCCchhchhcc--------------------CCCCcccEEEcccccCccccCc
Q 043298 83 EVG-----------NLPSSVKVLDVYGCPKLESIAERL--------------------DNNTSLETISIYNCENLKILPS 131 (357)
Q Consensus 83 ~l~-----------~l~~~L~~L~l~~c~~~~~~~~~~--------------------~~~~~L~~L~l~~c~~l~~l~~ 131 (357)
+++ .+++ |++|++++| .++.++... ..+.+|++|++++ +.+..++
T Consensus 118 ~L~~n~l~~~~~~~~l~~-L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~- 193 (466)
T 1o6v_A 118 TLFNNQITDIDPLKNLTN-LNRLELSSN-TISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISS-NKVSDIS- 193 (466)
T ss_dssp ECCSSCCCCCGGGTTCTT-CSEEEEEEE-EECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCS-SCCCCCG-
T ss_pred ECCCCCCCCChHHcCCCC-CCEEECCCC-ccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcC-CcCCCCh-
Confidence 665 4555 666666663 444443321 1222344444443 2233322
Q ss_pred cccCccccceeecccCCCccccCCCCcCcccccEEEeecCCCcccccccccCCCCCceEEecC-ccCCccCCCCCCccce
Q 043298 132 GLHKLHQLREIWIRECGNLVSFPEGGLPCAKLRRLGIYDCERLEALPKGLHNLSSLQELTIGG-ELPSLEEDGLPTNLHS 210 (357)
Q Consensus 132 ~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~L~~ 210 (357)
.+..+++|+.|++++|. +...+. +..+++|+.|++++|. +..+ ..+..+++|++|++++ .++.++....+++|+.
T Consensus 194 ~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~ 269 (466)
T 1o6v_A 194 VLAKLTNLESLIATNNQ-ISDITP-LGILTNLDELSLNGNQ-LKDI-GTLASLTNLTDLDLANNQISNLAPLSGLTKLTE 269 (466)
T ss_dssp GGGGCTTCSEEECCSSC-CCCCGG-GGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSE
T ss_pred hhccCCCCCEEEecCCc-cccccc-ccccCCCCEEECCCCC-cccc-hhhhcCCCCCEEECCCCccccchhhhcCCCCCE
Confidence 23344444444444432 222211 2334455555555432 2222 2344555555555555 4444444444556666
Q ss_pred EEecCCcchhhhhhhcccccCCCCCcceEEeecCCCCCCcCccccccccCCCCCCCCccEEEcCccccCccccccccccc
Q 043298 211 LDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLEHLSSSIVDLQ 290 (357)
Q Consensus 211 L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~ 290 (357)
|++++| .+...++ +..+++|+.|++++ +.+..++.. ..+++|+.|++++| .+..++. +..++
T Consensus 270 L~l~~n-~l~~~~~-----~~~l~~L~~L~L~~--n~l~~~~~~--------~~l~~L~~L~L~~n-~l~~~~~-~~~l~ 331 (466)
T 1o6v_A 270 LKLGAN-QISNISP-----LAGLTALTNLELNE--NQLEDISPI--------SNLKNLTYLTLYFN-NISDISP-VSSLT 331 (466)
T ss_dssp EECCSS-CCCCCGG-----GTTCTTCSEEECCS--SCCSCCGGG--------GGCTTCSEEECCSS-CCSCCGG-GGGCT
T ss_pred EECCCC-ccCcccc-----ccCCCccCeEEcCC--CcccCchhh--------cCCCCCCEEECcCC-cCCCchh-hccCc
Confidence 666653 3333331 35556666666666 334444331 25566777777764 3444432 45667
Q ss_pred ccCeeccccCCCCcccCCCCCccCCceEEecCChhhHHHhhcCCCccccccCCcceEEEeeEEe
Q 043298 291 NLTSLGLYNCPKLKYFPEKGLPSSLLLLWIEGCPLIEEKCRKDGGQYWDLLTHIPYVVIDWKWV 354 (357)
Q Consensus 291 ~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (357)
+|++|++.+| .++.++.-..+++|+.|++++|.- +... ....+..+..+.+.++.+
T Consensus 332 ~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l-~~~~------~~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 332 KLQRLFFYNN-KVSDVSSLANLTNINWLSAGHNQI-SDLT------PLANLTRITQLGLNDQAW 387 (466)
T ss_dssp TCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCC-CBCG------GGTTCTTCCEEECCCEEE
T ss_pred cCCEeECCCC-ccCCchhhccCCCCCEEeCCCCcc-Cccc------hhhcCCCCCEEeccCCcc
Confidence 7777777764 455554434456777777777642 1111 134455666676666544
No 13
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=8e-23 Score=204.81 Aligned_cols=60 Identities=18% Similarity=0.164 Sum_probs=28.0
Q ss_pred CCCCccEEEcCccccCcccccccccccccCeeccccCCCCcccCCC-CCccCCceEEecCC
Q 043298 264 LPASLTSLWIEDFPNLEHLSSSIVDLQNLTSLGLYNCPKLKYFPEK-GLPSSLLLLWIEGC 323 (357)
Q Consensus 264 ~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c 323 (357)
.+++|++|++++|.....+|..+..+++|++|++.+|.-...+|.. +.+++|++|++++|
T Consensus 464 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 524 (768)
T 3rgz_A 464 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred CCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCC
Confidence 4455555555554322344555555555555555553222233321 12445555555554
No 14
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.89 E-value=7e-22 Score=191.32 Aligned_cols=106 Identities=19% Similarity=0.216 Sum_probs=67.2
Q ss_pred eeccCCccccccccccccccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCC-CCCCcccc
Q 043298 3 SIKHCRSLTYIAAVQLPSSLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKY-ELPATLES 81 (357)
Q Consensus 3 ~~~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~-~~~~~L~~ 81 (357)
+++++ +++.+|. ..+++|++|++++|. +..++.. .+..++ +|++|+++++ .++.+.|.. ..+++|+.
T Consensus 37 ~ls~~-~L~~ip~-~~~~~L~~L~Ls~N~-i~~~~~~------~~~~l~--~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~ 104 (562)
T 3a79_B 37 DYSNR-NLTHVPK-DLPPRTKALSLSQNS-ISELRMP------DISFLS--ELRVLRLSHN-RIRSLDFHVFLFNQDLEY 104 (562)
T ss_dssp ECTTS-CCCSCCT-TSCTTCCEEECCSSC-CCCCCGG------GTTTCT--TCCEEECCSC-CCCEECTTTTTTCTTCCE
T ss_pred EcCCC-CCccCCC-CCCCCcCEEECCCCC-ccccChh------hhccCC--CccEEECCCC-CCCcCCHHHhCCCCCCCE
Confidence 44444 5666664 345788888888776 6666654 456666 7888888774 566662332 55677777
Q ss_pred eecc----------cCCCcceEEEecCCCCchhch--hccCCCCcccEEEccc
Q 043298 82 LEVG----------NLPSSVKVLDVYGCPKLESIA--ERLDNNTSLETISIYN 122 (357)
Q Consensus 82 L~l~----------~l~~~L~~L~l~~c~~~~~~~--~~~~~~~~L~~L~l~~ 122 (357)
|+++ .+++ |++|++++ +.++.++ ..++.+.+|++|++++
T Consensus 105 L~Ls~N~l~~lp~~~l~~-L~~L~Ls~-N~l~~l~~p~~~~~l~~L~~L~L~~ 155 (562)
T 3a79_B 105 LDVSHNRLQNISCCPMAS-LRHLDLSF-NDFDVLPVCKEFGNLTKLTFLGLSA 155 (562)
T ss_dssp EECTTSCCCEECSCCCTT-CSEEECCS-SCCSBCCCCGGGGGCTTCCEEEEEC
T ss_pred EECCCCcCCccCcccccc-CCEEECCC-CCccccCchHhhcccCcccEEecCC
Confidence 7777 4556 77777777 4555543 3344455577777666
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.89 E-value=1e-21 Score=189.59 Aligned_cols=143 Identities=21% Similarity=0.226 Sum_probs=92.0
Q ss_pred ccccccccccccccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccC-C-CCCCcccceecc-
Q 043298 9 SLTYIAAVQLPSSLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSK-Y-ELPATLESLEVG- 85 (357)
Q Consensus 9 ~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~-~~~~~L~~L~l~- 85 (357)
+++.+|. .++++|++|+++++. ++.++.. .+..++ +|++|+++++ .++.+ ++ . ..+++|+.|+++
T Consensus 16 ~l~~ip~-~~~~~L~~L~Ls~n~-l~~~~~~------~~~~l~--~L~~L~Ls~n-~i~~~-~~~~~~~l~~L~~L~Ls~ 83 (549)
T 2z81_A 16 SFTSIPS-GLTAAMKSLDLSFNK-ITYIGHG------DLRACA--NLQVLILKSS-RINTI-EGDAFYSLGSLEHLDLSD 83 (549)
T ss_dssp CCSSCCS-CCCTTCCEEECCSSC-CCEECSS------TTSSCT--TCCEEECTTS-CCCEE-CTTTTTTCTTCCEEECTT
T ss_pred ccccccc-cCCCCccEEECcCCc-cCccChh------hhhcCC--cccEEECCCC-CcCcc-ChhhccccccCCEEECCC
Confidence 4666665 345788888888887 7776554 467777 8888888884 56666 43 2 667788888777
Q ss_pred ------------cCCCcceEEEecCCCCchh--chhccCCCCcccEEEcccccCccccC-ccccCccccceeecccCCCc
Q 043298 86 ------------NLPSSVKVLDVYGCPKLES--IAERLDNNTSLETISIYNCENLKILP-SGLHKLHQLREIWIRECGNL 150 (357)
Q Consensus 86 ------------~l~~~L~~L~l~~c~~~~~--~~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~~~~l 150 (357)
.+++ |++|++++| .++. .+...+.+.+|++|+++++..+..++ ..+.++++|++|++++|...
T Consensus 84 n~l~~~~~~~~~~l~~-L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 84 NHLSSLSSSWFGPLSS-LKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp SCCCSCCHHHHTTCTT-CCEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CccCccCHHHhccCCC-CcEEECCCC-cccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence 5667 888888874 5553 33344455668888887755456554 35667777777777765443
Q ss_pred cccCCCCcCcccccE
Q 043298 151 VSFPEGGLPCAKLRR 165 (357)
Q Consensus 151 ~~~~~~~~~l~~L~~ 165 (357)
...|..+..+++|++
T Consensus 162 ~~~~~~l~~l~~L~~ 176 (549)
T 2z81_A 162 NYQSQSLKSIRDIHH 176 (549)
T ss_dssp EECTTTTTTCSEEEE
T ss_pred ccChhhhhccccCce
Confidence 334444443333333
No 16
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.89 E-value=6e-22 Score=198.63 Aligned_cols=282 Identities=16% Similarity=0.151 Sum_probs=177.0
Q ss_pred ccccceeecccccccc--cccccccccccCCCCCCcCCccEEEEecCCCccccccC--C-CCCCcccceecc--------
Q 043298 19 PSSLKNLQIRDCYNIR--TLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSK--Y-ELPATLESLEVG-------- 85 (357)
Q Consensus 19 ~~~L~~L~l~~~~~l~--~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~--~-~~~~~L~~L~l~-------- 85 (357)
+++|+.|++++|..+. .+|..++.-...+..++ +|++|+++++ .++.+ |. . ..+++|+.|+++
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~--~L~~L~Ls~N-~L~~i-p~~~~l~~L~~L~~L~Ls~N~l~~lp 589 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGP--KIQIFYMGYN-NLEEF-PASASLQKMVKLGLLDCVHNKVRHLE 589 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTT--TCCEEECCSS-CCCBC-CCHHHHTTCTTCCEEECTTSCCCBCC
T ss_pred CCCCCEEECcCCCCcccccchHHHHhhhhcccccC--CccEEEeeCC-cCCcc-CChhhhhcCCCCCEEECCCCCcccch
Confidence 5667777776665333 24543110000122333 6777777763 45555 65 3 556666666665
Q ss_pred ---cCCCcceEEEecCCCCchhchhccCCCCc-ccEEEcccccCccccCccccCcc--ccceeecccCCCccccCC---C
Q 043298 86 ---NLPSSVKVLDVYGCPKLESIAERLDNNTS-LETISIYNCENLKILPSGLHKLH--QLREIWIRECGNLVSFPE---G 156 (357)
Q Consensus 86 ---~l~~~L~~L~l~~c~~~~~~~~~~~~~~~-L~~L~l~~c~~l~~l~~~~~~l~--~L~~L~l~~~~~l~~~~~---~ 156 (357)
.+++ |++|++++ +.++.+|..++.+.+ |+.|++++ +.+..+|..+..++ +|+.|++++|.....+|. .
T Consensus 590 ~~~~L~~-L~~L~Ls~-N~l~~lp~~l~~l~~~L~~L~Ls~-N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~ 666 (876)
T 4ecn_A 590 AFGTNVK-LTDLKLDY-NQIEEIPEDFCAFTDQVEGLGFSH-NKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS 666 (876)
T ss_dssp CCCTTSE-ESEEECCS-SCCSCCCTTSCEECTTCCEEECCS-SCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSC
T ss_pred hhcCCCc-ceEEECcC-CccccchHHHhhccccCCEEECcC-CCCCcCchhhhccccCCCCEEECcCCcCCCccccchhh
Confidence 3445 66666666 345566655444444 66677666 44556665555443 366677766543332221 1
Q ss_pred C--cCcccccEEEeecCCCcccccccc-cCCCCCceEEecC-ccCCccCCCC---------CCccceEEecCCcchhhhh
Q 043298 157 G--LPCAKLRRLGIYDCERLEALPKGL-HNLSSLQELTIGG-ELPSLEEDGL---------PTNLHSLDIWGNMEIWKSM 223 (357)
Q Consensus 157 ~--~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~-~~~~~~~~~~---------~~~L~~L~l~~~~~l~~~~ 223 (357)
. ..+++|+.|++++|. +..+|..+ ..+++|+.|++++ .++.+|...+ +++|+.|++++| .++.++
T Consensus 667 l~~~~~~~L~~L~Ls~N~-L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp 744 (876)
T 4ecn_A 667 MDDYKGINASTVTLSYNE-IQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLS 744 (876)
T ss_dssp TTTCCCCCEEEEECCSSC-CCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCC
T ss_pred hccccCCCcCEEEccCCc-CCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCC-CCccch
Confidence 1 133477777777754 33566544 4778888888888 6767665322 128889999885 555555
Q ss_pred hhcccccC--CCCCcceEEeecCCCCCCcCccccccccCCCCCCCCccEEEcCc------cccCcccccccccccccCee
Q 043298 224 IERGRGFH--RFSSLGHLKIGGCDDDMVSFPLEDKRLGTALPLPASLTSLWIED------FPNLEHLSSSIVDLQNLTSL 295 (357)
Q Consensus 224 ~~~~~~l~--~~~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~------c~~l~~i~~~~~~~~~L~~L 295 (357)
. .+. .+++|+.|++++ +.+..+|... ..+++|+.|++++ +.....+|..+..+++|+.|
T Consensus 745 ~----~l~~~~l~~L~~L~Ls~--N~L~~lp~~l-------~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L 811 (876)
T 4ecn_A 745 D----DFRATTLPYLSNMDVSY--NCFSSFPTQP-------LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQL 811 (876)
T ss_dssp G----GGSTTTCTTCCEEECCS--SCCSSCCCGG-------GGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEE
T ss_pred H----HhhhccCCCcCEEEeCC--CCCCccchhh-------hcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEE
Confidence 3 334 788999999988 5666677665 4678899999976 33455778888889999999
Q ss_pred ccccCCCCcccCCCCCccCCceEEecCCh
Q 043298 296 GLYNCPKLKYFPEKGLPSSLLLLWIEGCP 324 (357)
Q Consensus 296 ~l~~c~~l~~l~~~~~~~~L~~L~i~~c~ 324 (357)
++++| .++.+|.. +.++|+.|++++|+
T Consensus 812 ~Ls~N-~L~~Ip~~-l~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 812 QIGSN-DIRKVDEK-LTPQLYILDIADNP 838 (876)
T ss_dssp ECCSS-CCCBCCSC-CCSSSCEEECCSCT
T ss_pred ECCCC-CCCccCHh-hcCCCCEEECCCCC
Confidence 99985 56888875 45799999999986
No 17
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=1.5e-21 Score=185.15 Aligned_cols=271 Identities=18% Similarity=0.175 Sum_probs=210.5
Q ss_pred ceeccCCcccccccccc--ccccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCC--CCCC
Q 043298 2 LSIKHCRSLTYIAAVQL--PSSLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKY--ELPA 77 (357)
Q Consensus 2 l~~~~c~~l~~~~~~~~--~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~--~~~~ 77 (357)
|+++++ +++.++...+ +++|++|+++++. +..++.. .+..++ +|++|++++ +.++.+ |.. ..++
T Consensus 37 L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~------~~~~l~--~L~~L~L~~-n~l~~~-~~~~~~~l~ 104 (477)
T 2id5_A 37 LDLGKN-RIKTLNQDEFASFPHLEELELNENI-VSAVEPG------AFNNLF--NLRTLGLRS-NRLKLI-PLGVFTGLS 104 (477)
T ss_dssp EECCSS-CCCEECTTTTTTCTTCCEEECTTSC-CCEECTT------TTTTCT--TCCEEECCS-SCCCSC-CTTSSTTCT
T ss_pred EECCCC-ccceECHhHccCCCCCCEEECCCCc-cCEeChh------hhhCCc--cCCEEECCC-CcCCcc-CcccccCCC
Confidence 455555 5666655444 8999999999986 7777555 567888 999999999 468887 654 5688
Q ss_pred cccceecc-------------cCCCcceEEEecCCCCchhchh-ccCCCCcccEEEcccccCccccCc-cccCcccccee
Q 043298 78 TLESLEVG-------------NLPSSVKVLDVYGCPKLESIAE-RLDNNTSLETISIYNCENLKILPS-GLHKLHQLREI 142 (357)
Q Consensus 78 ~L~~L~l~-------------~l~~~L~~L~l~~c~~~~~~~~-~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L 142 (357)
+|+.|+++ .+++ |++|++++ +.++.++. .+..+.+|++|++++ +.++.++. .+..+++|+.|
T Consensus 105 ~L~~L~Ls~n~i~~~~~~~~~~l~~-L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L 181 (477)
T 2id5_A 105 NLTKLDISENKIVILLDYMFQDLYN-LKSLEVGD-NDLVYISHRAFSGLNSLEQLTLEK-CNLTSIPTEALSHLHGLIVL 181 (477)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTT-CCEEEECC-TTCCEECTTSSTTCTTCCEEEEES-CCCSSCCHHHHTTCTTCCEE
T ss_pred CCCEEECCCCccccCChhHcccccc-CCEEECCC-CccceeChhhccCCCCCCEEECCC-CcCcccChhHhcccCCCcEE
Confidence 99999987 5778 99999999 56666543 344567799999999 57777764 47889999999
Q ss_pred ecccCCCccccC-CCCcCcccccEEEeecCCCcccccccccCCCCCceEEecC-ccCCccC--CCCCCccceEEecCCcc
Q 043298 143 WIRECGNLVSFP-EGGLPCAKLRRLGIYDCERLEALPKGLHNLSSLQELTIGG-ELPSLEE--DGLPTNLHSLDIWGNME 218 (357)
Q Consensus 143 ~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~--~~~~~~L~~L~l~~~~~ 218 (357)
+++++. +..++ ..+..+++|+.|++++|+....++..+....+|++|++++ .++.++. ...+++|+.|++++| .
T Consensus 182 ~l~~n~-i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~ 259 (477)
T 2id5_A 182 RLRHLN-INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN-P 259 (477)
T ss_dssp EEESCC-CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSS-C
T ss_pred eCCCCc-CcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCC-c
Confidence 999965 44444 4678899999999999998888887777777999999999 7877763 566789999999995 4
Q ss_pred hhhhhhhcccccCCCCCcceEEeecCCCCCCcCccccccccCCCCCCCCccEEEcCccccCccccc-ccccccccCeecc
Q 043298 219 IWKSMIERGRGFHRFSSLGHLKIGGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLEHLSS-SIVDLQNLTSLGL 297 (357)
Q Consensus 219 l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l 297 (357)
++.+++. .+..+++|++|++++ +.+..+.... +..+++|+.|++++ +.++.++. .+..+++|++|++
T Consensus 260 l~~~~~~---~~~~l~~L~~L~L~~--n~l~~~~~~~------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l 327 (477)
T 2id5_A 260 ISTIEGS---MLHELLRLQEIQLVG--GQLAVVEPYA------FRGLNYLRVLNVSG-NQLTTLEESVFHSVGNLETLIL 327 (477)
T ss_dssp CCEECTT---SCTTCTTCCEEECCS--SCCSEECTTT------BTTCTTCCEEECCS-SCCSCCCGGGBSCGGGCCEEEC
T ss_pred CCccChh---hccccccCCEEECCC--CccceECHHH------hcCcccCCEEECCC-CcCceeCHhHcCCCcccCEEEc
Confidence 5555543 678899999999999 4555553322 35778999999999 47777765 4678899999999
Q ss_pred ccCC
Q 043298 298 YNCP 301 (357)
Q Consensus 298 ~~c~ 301 (357)
.+++
T Consensus 328 ~~N~ 331 (477)
T 2id5_A 328 DSNP 331 (477)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 8753
No 18
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=1.2e-21 Score=185.39 Aligned_cols=265 Identities=18% Similarity=0.209 Sum_probs=185.5
Q ss_pred ccccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCCCCCCcccceecc----------cCC
Q 043298 19 PSSLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKYELPATLESLEVG----------NLP 88 (357)
Q Consensus 19 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~----------~l~ 88 (357)
+++|++|++++|. ++.++. +..++ +|++|++++| .+..+ +....+++|+.|+++ .++
T Consensus 111 l~~L~~L~L~~n~-l~~~~~--------~~~l~--~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 177 (466)
T 1o6v_A 111 LTNLTGLTLFNNQ-ITDIDP--------LKNLT--NLNRLELSSN-TISDI-SALSGLTSLQQLSFGNQVTDLKPLANLT 177 (466)
T ss_dssp CTTCCEEECCSSC-CCCCGG--------GTTCT--TCSEEEEEEE-EECCC-GGGTTCTTCSEEEEEESCCCCGGGTTCT
T ss_pred CCCCCEEECCCCC-CCCChH--------HcCCC--CCCEEECCCC-ccCCC-hhhccCCcccEeecCCcccCchhhccCC
Confidence 4445555554443 443332 23444 6666666663 34444 434455566665544 567
Q ss_pred CcceEEEecCCCCchhchhccCCCCcccEEEcccccCccccCccccCccccceeecccCCCccccCCCCcCcccccEEEe
Q 043298 89 SSVKVLDVYGCPKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSFPEGGLPCAKLRRLGI 168 (357)
Q Consensus 89 ~~L~~L~l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l 168 (357)
+ |++|++++| .++.++... .+.+|++|++++ +.+..++. ++.+++|+.|++++| .+..++ .+..+++|+.|++
T Consensus 178 ~-L~~L~l~~n-~l~~~~~l~-~l~~L~~L~l~~-n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l 250 (466)
T 1o6v_A 178 T-LERLDISSN-KVSDISVLA-KLTNLESLIATN-NQISDITP-LGILTNLDELSLNGN-QLKDIG-TLASLTNLTDLDL 250 (466)
T ss_dssp T-CCEEECCSS-CCCCCGGGG-GCTTCSEEECCS-SCCCCCGG-GGGCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEEC
T ss_pred C-CCEEECcCC-cCCCChhhc-cCCCCCEEEecC-Cccccccc-ccccCCCCEEECCCC-Ccccch-hhhcCCCCCEEEC
Confidence 7 999999984 567665543 556799999998 56666543 677999999999985 455553 4567889999999
Q ss_pred ecCCCcccccccccCCCCCceEEecC-ccCCccCCCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeecCCCC
Q 043298 169 YDCERLEALPKGLHNLSSLQELTIGG-ELPSLEEDGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDD 247 (357)
Q Consensus 169 ~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~ 247 (357)
++|... ..+. +..+++|++|++++ .++.++....+++|+.|++++| .+...++ +..+++|+.|++++ | .
T Consensus 251 ~~n~l~-~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n-~l~~~~~-----~~~l~~L~~L~L~~-n-~ 320 (466)
T 1o6v_A 251 ANNQIS-NLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNEN-QLEDISP-----ISNLKNLTYLTLYF-N-N 320 (466)
T ss_dssp CSSCCC-CCGG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSS-CCSCCGG-----GGGCTTCSEEECCS-S-C
T ss_pred CCCccc-cchh-hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCC-cccCchh-----hcCCCCCCEEECcC-C-c
Confidence 986643 3432 78899999999999 7777766777899999999985 4555552 47889999999999 4 5
Q ss_pred CCcCccccccccCCCCCCCCccEEEcCccccCcccccccccccccCeeccccCCCCcccCCCCCccCCceEEecCCh
Q 043298 248 MVSFPLEDKRLGTALPLPASLTSLWIEDFPNLEHLSSSIVDLQNLTSLGLYNCPKLKYFPEKGLPSSLLLLWIEGCP 324 (357)
Q Consensus 248 l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~ 324 (357)
+..++.. ..+++|+.|++++| .+..++ .+..+++|+.|++.+| .++.+++...+++|+.|++++|+
T Consensus 321 l~~~~~~--------~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 321 ISDISPV--------SSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAGHN-QISDLTPLANLTRITQLGLNDQA 386 (466)
T ss_dssp CSCCGGG--------GGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECCSS-CCCBCGGGTTCTTCCEEECCCEE
T ss_pred CCCchhh--------ccCccCCEeECCCC-ccCCch-hhccCCCCCEEeCCCC-ccCccchhhcCCCCCEEeccCCc
Confidence 5555542 36789999999985 566664 5688899999999986 45555444556889999988874
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=1.2e-21 Score=190.97 Aligned_cols=270 Identities=18% Similarity=0.175 Sum_probs=172.2
Q ss_pred cccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccC-C-CCCCcccceecc------------
Q 043298 20 SSLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSK-Y-ELPATLESLEVG------------ 85 (357)
Q Consensus 20 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~-~-~~~~~L~~L~l~------------ 85 (357)
++++.|+++++. +..+|.. ++..++ +|++|+++++ .++.+ ++ . ..+++|+.|+++
T Consensus 51 ~~l~~l~l~~~~-l~~lp~~------~~~~l~--~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 119 (597)
T 3oja_B 51 NNQKIVTFKNST-MRKLPAA------LLDSFR--QVELLNLNDL-QIEEI-DTYAFAYAHTIQKLYMGFNAIRYLPPHVF 119 (597)
T ss_dssp CCCSEEEESSCE-ESEECTH------HHHHCC--CCSEEECTTS-CCCEE-CTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CCceEEEeeCCC-CCCcCHH------HHccCC--CCcEEECCCC-CCCCC-ChHHhcCCCCCCEEECCCCcCCCCCHHHH
Confidence 445555555544 4444444 334444 5555555552 34444 32 1 444455555554
Q ss_pred -cCCCcceEEEecCCCCchhchhcc-CCCCcccEEEcccccCccccC-ccccCccccceeecccCCCccccCCCCcCccc
Q 043298 86 -NLPSSVKVLDVYGCPKLESIAERL-DNNTSLETISIYNCENLKILP-SGLHKLHQLREIWIRECGNLVSFPEGGLPCAK 162 (357)
Q Consensus 86 -~l~~~L~~L~l~~c~~~~~~~~~~-~~~~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~ 162 (357)
.+++ |++|++++ +.++.+|... +.+.+|++|++++ +.+..++ ..++.+++|+.|++++| .+..++ ...+++
T Consensus 120 ~~l~~-L~~L~L~~-n~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~--~~~l~~ 193 (597)
T 3oja_B 120 QNVPL-LTVLVLER-NDLSSLPRGIFHNTPKLTTLSMSN-NNLERIEDDTFQATTSLQNLQLSSN-RLTHVD--LSLIPS 193 (597)
T ss_dssp TTCTT-CCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECTTS-CCSBCC--GGGCTT
T ss_pred cCCCC-CCEEEeeC-CCCCCCCHHHhccCCCCCEEEeeC-CcCCCCChhhhhcCCcCcEEECcCC-CCCCcC--hhhhhh
Confidence 4555 77888877 4666666653 4556678888877 4555443 45677777888887774 344332 223344
Q ss_pred ccEEEeecCC------------------CcccccccccCCCCCceEEecC-ccCCccCCCCCCccceEEecCCcchhhhh
Q 043298 163 LRRLGIYDCE------------------RLEALPKGLHNLSSLQELTIGG-ELPSLEEDGLPTNLHSLDIWGNMEIWKSM 223 (357)
Q Consensus 163 L~~L~l~~~~------------------~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 223 (357)
|+.|++++|. .+..++..+ .++|+.|++++ .++..+....+++|+.|++++| .+...+
T Consensus 194 L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N-~l~~~~ 270 (597)
T 3oja_B 194 LFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYN-ELEKIM 270 (597)
T ss_dssp CSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSS-CCCEEE
T ss_pred hhhhhcccCccccccCCchhheeeccCCccccccccc--CCCCCEEECCCCCCCCChhhccCCCCCEEECCCC-ccCCCC
Confidence 5554444432 122232222 25788888888 6666666667789999999985 455454
Q ss_pred hhcccccCCCCCcceEEeecCCCCCCcCccccccccCCCCCCCCccEEEcCccccCcccccccccccccCeeccccCCCC
Q 043298 224 IERGRGFHRFSSLGHLKIGGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLEHLSSSIVDLQNLTSLGLYNCPKL 303 (357)
Q Consensus 224 ~~~~~~l~~~~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l 303 (357)
+. .+..+++|+.|++++ +.+..++... ..+++|+.|++++ +.+..+|..+..+++|+.|++++| .+
T Consensus 271 ~~---~~~~l~~L~~L~Ls~--N~l~~l~~~~-------~~l~~L~~L~Ls~-N~l~~i~~~~~~l~~L~~L~L~~N-~l 336 (597)
T 3oja_B 271 YH---PFVKMQRLERLYISN--NRLVALNLYG-------QPIPTLKVLDLSH-NHLLHVERNQPQFDRLENLYLDHN-SI 336 (597)
T ss_dssp SG---GGTTCSSCCEEECTT--SCCCEEECSS-------SCCTTCCEEECCS-SCCCCCGGGHHHHTTCSEEECCSS-CC
T ss_pred HH---HhcCccCCCEEECCC--CCCCCCCccc-------ccCCCCcEEECCC-CCCCccCcccccCCCCCEEECCCC-CC
Confidence 33 578889999999998 5666666554 4678999999999 467788888888999999999995 57
Q ss_pred cccCCCCCccCCceEEecCCh
Q 043298 304 KYFPEKGLPSSLLLLWIEGCP 324 (357)
Q Consensus 304 ~~l~~~~~~~~L~~L~i~~c~ 324 (357)
..++. +.+++|+.|++++++
T Consensus 337 ~~~~~-~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 337 VTLKL-STHHTLKNLTLSHND 356 (597)
T ss_dssp CCCCC-CTTCCCSEEECCSSC
T ss_pred CCcCh-hhcCCCCEEEeeCCC
Confidence 77765 345799999999865
No 20
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.88 E-value=1.7e-21 Score=190.25 Aligned_cols=124 Identities=21% Similarity=0.234 Sum_probs=69.0
Q ss_pred cccccccccccccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCC-CCCCcccceecc---
Q 043298 10 LTYIAAVQLPSSLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKY-ELPATLESLEVG--- 85 (357)
Q Consensus 10 l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~-~~~~~L~~L~l~--- 85 (357)
++.+|. ..+++|++|+++++. ++.++.. .+..++ +|++|+++++ .++.+.|.. ..+++|+.|+++
T Consensus 23 l~~ip~-~~~~~l~~L~Ls~n~-l~~~~~~------~~~~l~--~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~Ls~n~ 91 (606)
T 3vq2_A 23 LSKVPD-DIPSSTKNIDLSFNP-LKILKSY------SFSNFS--ELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTGNP 91 (606)
T ss_dssp CSSCCT-TSCTTCCEEECTTSC-CCEECTT------TTTTCT--TCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC
T ss_pred cccCCC-CCCCCcCEEECCCCC-cCEeChh------hccCCc--cCcEEeCCCC-cccccCHHHhhchhhcCEeECCCCc
Confidence 455554 334666666666665 5555554 455555 6666666663 455552222 455666666665
Q ss_pred ----------cCCCcceEEEecCCCCchhch-hccCCCCcccEEEcccccCcc--ccCccccCccccceeecccC
Q 043298 86 ----------NLPSSVKVLDVYGCPKLESIA-ERLDNNTSLETISIYNCENLK--ILPSGLHKLHQLREIWIREC 147 (357)
Q Consensus 86 ----------~l~~~L~~L~l~~c~~~~~~~-~~~~~~~~L~~L~l~~c~~l~--~l~~~~~~l~~L~~L~l~~~ 147 (357)
.+++ |++|++++ +.++.++ ..++.+.+|++|++++ +.+. .+|..++++++|++|++++|
T Consensus 92 l~~~~p~~~~~l~~-L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~lp~~~~~l~~L~~L~Ls~n 163 (606)
T 3vq2_A 92 IQSFSPGSFSGLTS-LENLVAVE-TKLASLESFPIGQLITLKKLNVAH-NFIHSCKLPAYFSNLTNLVHVDLSYN 163 (606)
T ss_dssp CCCCCTTSSTTCTT-CCEEECTT-SCCCCSSSSCCTTCTTCCEEECCS-SCCCCCCCCGGGGTCTTCCEEECCSS
T ss_pred ccccChhhcCCccc-CCEEEccC-CccccccccccCCCCCCCEEeCCC-CcccceechHhHhhcCCCCEEEccCC
Confidence 4555 66666666 3444443 2234455566666666 3444 24555666666666666554
No 21
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=8.5e-22 Score=177.76 Aligned_cols=218 Identities=22% Similarity=0.277 Sum_probs=152.9
Q ss_pred CccEEEEecCCCccccccCCCCCCcccceecccCCCcceEEEecCCCCchhchhccCCCCcccEEEcccccCccccCccc
Q 043298 54 LLEELFVFNCDSLTCIFSKYELPATLESLEVGNLPSSVKVLDVYGCPKLESIAERLDNNTSLETISIYNCENLKILPSGL 133 (357)
Q Consensus 54 ~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~l~~~L~~L~l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~ 133 (357)
+++.|++++ +.++.+ |.. +..+++ |++|++++ +.++.+|..++.+.+|++|++++ +.++.+|..+
T Consensus 82 ~l~~L~L~~-n~l~~l-p~~----------l~~l~~-L~~L~L~~-n~l~~lp~~~~~l~~L~~L~Ls~-n~l~~lp~~l 146 (328)
T 4fcg_A 82 GRVALELRS-VPLPQF-PDQ----------AFRLSH-LQHMTIDA-AGLMELPDTMQQFAGLETLTLAR-NPLRALPASI 146 (328)
T ss_dssp TCCEEEEES-SCCSSC-CSC----------GGGGTT-CSEEEEES-SCCCCCCSCGGGGTTCSEEEEES-CCCCCCCGGG
T ss_pred ceeEEEccC-CCchhc-Chh----------hhhCCC-CCEEECCC-CCccchhHHHhccCCCCEEECCC-CccccCcHHH
Confidence 778888887 456665 543 113344 88888887 45667776665566688888887 5677778778
Q ss_pred cCccccceeecccCCCccccCCCCcC---------cccccEEEeecCCCcccccccccCCCCCceEEecC-ccCCccC-C
Q 043298 134 HKLHQLREIWIRECGNLVSFPEGGLP---------CAKLRRLGIYDCERLEALPKGLHNLSSLQELTIGG-ELPSLEE-D 202 (357)
Q Consensus 134 ~~l~~L~~L~l~~~~~l~~~~~~~~~---------l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~-~ 202 (357)
+.+++|+.|++++|+....+|..+.. +++|+.|++++|. ++.+|..++.+++|++|++++ .++.++. .
T Consensus 147 ~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l 225 (328)
T 4fcg_A 147 ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLSALGPAI 225 (328)
T ss_dssp GGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCCCCCCGGG
T ss_pred hcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCCCcCchhh
Confidence 88888888888887777777765543 7788888888754 447777788888888888877 6665543 4
Q ss_pred CCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeecCCCCCCcCccccccccCCCCCCCCccEEEcCccccCccc
Q 043298 203 GLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLEHL 282 (357)
Q Consensus 203 ~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i 282 (357)
..+++|++|++++|.....++ ..+..+++|+.|++++ |.....+|... ..+++|++|++++|+....+
T Consensus 226 ~~l~~L~~L~Ls~n~~~~~~p----~~~~~l~~L~~L~L~~-n~~~~~~p~~~-------~~l~~L~~L~L~~n~~~~~i 293 (328)
T 4fcg_A 226 HHLPKLEELDLRGCTALRNYP----PIFGGRAPLKRLILKD-CSNLLTLPLDI-------HRLTQLEKLDLRGCVNLSRL 293 (328)
T ss_dssp GGCTTCCEEECTTCTTCCBCC----CCTTCCCCCCEEECTT-CTTCCBCCTTG-------GGCTTCCEEECTTCTTCCCC
T ss_pred ccCCCCCEEECcCCcchhhhH----HHhcCCCCCCEEECCC-CCchhhcchhh-------hcCCCCCEEeCCCCCchhhc
Confidence 446777777777766655555 2466777777777777 66666666555 36677777777777777777
Q ss_pred ccccccccccCeecccc
Q 043298 283 SSSIVDLQNLTSLGLYN 299 (357)
Q Consensus 283 ~~~~~~~~~L~~L~l~~ 299 (357)
|.++..+++++.+.+..
T Consensus 294 P~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 294 PSLIAQLPANCIILVPP 310 (328)
T ss_dssp CGGGGGSCTTCEEECCG
T ss_pred cHHHhhccCceEEeCCH
Confidence 77777777777776654
No 22
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=1.3e-21 Score=184.19 Aligned_cols=269 Identities=15% Similarity=0.153 Sum_probs=148.1
Q ss_pred ccccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCCCCCCcccceecc----------cCC
Q 043298 19 PSSLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKYELPATLESLEVG----------NLP 88 (357)
Q Consensus 19 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~----------~l~ 88 (357)
+++|++|+++++. ++.+|. +..++ +|++|+++++ .++.+ | ...+++|+.|+++ .++
T Consensus 41 l~~L~~L~Ls~n~-l~~~~~--------l~~l~--~L~~L~Ls~n-~l~~~-~-~~~l~~L~~L~Ls~N~l~~~~~~~l~ 106 (457)
T 3bz5_A 41 LATLTSLDCHNSS-ITDMTG--------IEKLT--GLTKLICTSN-NITTL-D-LSQNTNLTYLACDSNKLTNLDVTPLT 106 (457)
T ss_dssp HTTCCEEECCSSC-CCCCTT--------GGGCT--TCSEEECCSS-CCSCC-C-CTTCTTCSEEECCSSCCSCCCCTTCT
T ss_pred cCCCCEEEccCCC-cccChh--------hcccC--CCCEEEccCC-cCCeE-c-cccCCCCCEEECcCCCCceeecCCCC
Confidence 5677777777765 555552 24555 6777777763 45555 4 3445566666655 456
Q ss_pred CcceEEEecCCCCchhchhccCCCCcccEEEcccccCccccCccccCccccceeecccCCCccccCCCCcCcccccEEEe
Q 043298 89 SSVKVLDVYGCPKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSFPEGGLPCAKLRRLGI 168 (357)
Q Consensus 89 ~~L~~L~l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l 168 (357)
+ |++|++++ +.++.++ .+.+.+|++|++++ +.++.++ ++.+++|+.|++++|..+..+ .+..+++|+.|++
T Consensus 107 ~-L~~L~L~~-N~l~~l~--~~~l~~L~~L~l~~-N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l 177 (457)
T 3bz5_A 107 K-LTYLNCDT-NKLTKLD--VSQNPLLTYLNCAR-NTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDC 177 (457)
T ss_dssp T-CCEEECCS-SCCSCCC--CTTCTTCCEEECTT-SCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEEC
T ss_pred c-CCEEECCC-CcCCeec--CCCCCcCCEEECCC-Cccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEEC
Confidence 6 77777777 4566554 33455577777777 5566553 566777777777776555555 2455667777777
Q ss_pred ecCCCcccccccccCCCCCceEEecC-ccCCccCCCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeecCCCC
Q 043298 169 YDCERLEALPKGLHNLSSLQELTIGG-ELPSLEEDGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDD 247 (357)
Q Consensus 169 ~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~ 247 (357)
++|. ++.+| ++.+++|+.|++++ .++.++ .+.+++|+.|++++| .++.++ +..+++|+.|++++ +.
T Consensus 178 s~n~-l~~l~--l~~l~~L~~L~l~~N~l~~~~-l~~l~~L~~L~Ls~N-~l~~ip------~~~l~~L~~L~l~~--N~ 244 (457)
T 3bz5_A 178 SFNK-ITELD--VSQNKLLNRLNCDTNNITKLD-LNQNIQLTFLDCSSN-KLTEID------VTPLTQLTYFDCSV--NP 244 (457)
T ss_dssp CSSC-CCCCC--CTTCTTCCEEECCSSCCSCCC-CTTCTTCSEEECCSS-CCSCCC------CTTCTTCSEEECCS--SC
T ss_pred CCCc-cceec--cccCCCCCEEECcCCcCCeec-cccCCCCCEEECcCC-cccccC------ccccCCCCEEEeeC--Cc
Confidence 7643 44443 66667777777766 555553 455567777777763 344433 35566777777776 34
Q ss_pred CCcCcccc-ccccCCCCCCCCccEEEcCccccCcccccccccccccCeeccccCCCCcccCCCCCccCCceEEecCChhh
Q 043298 248 MVSFPLED-KRLGTALPLPASLTSLWIEDFPNLEHLSSSIVDLQNLTSLGLYNCPKLKYFPEKGLPSSLLLLWIEGCPLI 326 (357)
Q Consensus 248 l~~~~~~~-~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~l 326 (357)
+..++... ..+...-....+|+.|++++|..+..+|. ..+++|+.|++++|..++.++. ..++|+.|++++|++|
T Consensus 245 l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~--~~l~~L~~L~Ls~n~~l~~l~~--~~~~L~~L~l~~~~~L 320 (457)
T 3bz5_A 245 LTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQA--EGCRKIKELDVTHNTQLYLLDC--QAAGITELDLSQNPKL 320 (457)
T ss_dssp CSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC--TTCTTCCCCCCTTCTTCCEEEC--TTCCCSCCCCTTCTTC
T ss_pred CCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccc--cccccCCEEECCCCcccceecc--CCCcceEechhhcccC
Confidence 44443211 00000000011334444444443444442 4456666666666655444443 1233444444444433
Q ss_pred H
Q 043298 327 E 327 (357)
Q Consensus 327 ~ 327 (357)
+
T Consensus 321 ~ 321 (457)
T 3bz5_A 321 V 321 (457)
T ss_dssp C
T ss_pred C
Confidence 3
No 23
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.88 E-value=2e-21 Score=189.75 Aligned_cols=280 Identities=16% Similarity=0.152 Sum_probs=205.3
Q ss_pred ccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCC-CCCCcccceecc-------------c
Q 043298 21 SLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKY-ELPATLESLEVG-------------N 86 (357)
Q Consensus 21 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~-~~~~~L~~L~l~-------------~ 86 (357)
+|+.|+++++. +..++.. .+..++ +|++|+++++ .++.+ |.. ..+++|+.|+++ .
T Consensus 255 ~L~~L~l~~n~-l~~~~~~------~~~~l~--~L~~L~l~~n-~l~~l-p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 323 (606)
T 3t6q_A 255 SVESINLQKHY-FFNISSN------TFHCFS--GLQELDLTAT-HLSEL-PSGLVGLSTLKKLVLSANKFENLCQISASN 323 (606)
T ss_dssp EEEEEECTTCC-CSSCCTT------TTTTCT--TCSEEECTTS-CCSCC-CSSCCSCTTCCEEECTTCCCSBGGGGCGGG
T ss_pred ceeEEEeecCc-cCccCHH------Hhcccc--CCCEEeccCC-ccCCC-ChhhcccccCCEEECccCCcCcCchhhhhc
Confidence 78899999886 7777776 677888 9999999995 67777 766 677888888887 5
Q ss_pred CCCcceEEEecCCCCchhchhc-cCCCCcccEEEcccccCcccc---CccccCccccceeecccCCCccccCCCCcCccc
Q 043298 87 LPSSVKVLDVYGCPKLESIAER-LDNNTSLETISIYNCENLKIL---PSGLHKLHQLREIWIRECGNLVSFPEGGLPCAK 162 (357)
Q Consensus 87 l~~~L~~L~l~~c~~~~~~~~~-~~~~~~L~~L~l~~c~~l~~l---~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~ 162 (357)
+++ |++|++++|.....++.. .+.+.+|++|++++ +.+..+ +..+..+++|++|++++|......|..+..+++
T Consensus 324 l~~-L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 401 (606)
T 3t6q_A 324 FPS-LTHLSIKGNTKRLELGTGCLENLENLRELDLSH-DDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ 401 (606)
T ss_dssp CTT-CSEEECCSCSSCCBCCSSTTTTCTTCCEEECCS-SCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTT
T ss_pred cCc-CCEEECCCCCcccccchhhhhccCcCCEEECCC-CccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCcc
Confidence 677 999999986544455544 34566799999988 556554 556788999999999986554455667778899
Q ss_pred ccEEEeecCCCcccccc-cccCCCCCceEEecC-ccCCccC--CCCCCccceEEecCCcchhhhhhhcccccCCCCCcce
Q 043298 163 LRRLGIYDCERLEALPK-GLHNLSSLQELTIGG-ELPSLEE--DGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGH 238 (357)
Q Consensus 163 L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~-~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~ 238 (357)
|+.|++++|......+. .+..+++|++|++++ .++..+. ...+++|++|++++|.......+. ...+..+++|+.
T Consensus 402 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~l~~L~~ 480 (606)
T 3t6q_A 402 LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQK-TNSLQTLGRLEI 480 (606)
T ss_dssp CSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECS-SCGGGGCTTCCE
T ss_pred CCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCcccccc-chhhccCCCccE
Confidence 99999998765555443 478899999999988 6655433 455789999999996543311110 024678899999
Q ss_pred EEeecCCCCCCcCccccccccCCCCCCCCccEEEcCccccCcccccccccccccCeeccccCCCCcccCCCC--CccCCc
Q 043298 239 LKIGGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLEHLSSSIVDLQNLTSLGLYNCPKLKYFPEKG--LPSSLL 316 (357)
Q Consensus 239 L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~--~~~~L~ 316 (357)
|++++ | .+..++... +..+++|++|+++++.--...|..+..+++| +|++.++ .++.+++.. .+++|+
T Consensus 481 L~Ls~-n-~l~~~~~~~------~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~L~ 550 (606)
T 3t6q_A 481 LVLSF-C-DLSSIDQHA------FTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN-HISIILPSLLPILSQQR 550 (606)
T ss_dssp EECTT-S-CCCEECTTT------TTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS-CCCCCCGGGHHHHHTSS
T ss_pred EECCC-C-ccCccChhh------hccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC-cccccCHhhcccCCCCC
Confidence 99999 4 455543222 3577899999999964434556678888889 9999984 677766543 267899
Q ss_pred eEEecCCh
Q 043298 317 LLWIEGCP 324 (357)
Q Consensus 317 ~L~i~~c~ 324 (357)
.|++++++
T Consensus 551 ~L~l~~N~ 558 (606)
T 3t6q_A 551 TINLRQNP 558 (606)
T ss_dssp EEECTTCC
T ss_pred EEeCCCCC
Confidence 99998865
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.88 E-value=2.3e-21 Score=185.87 Aligned_cols=107 Identities=17% Similarity=0.193 Sum_probs=61.8
Q ss_pred ceeccCCccccccccccccccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCC-CCCCccc
Q 043298 2 LSIKHCRSLTYIAAVQLPSSLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKY-ELPATLE 80 (357)
Q Consensus 2 l~~~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~-~~~~~L~ 80 (357)
|+++++ +++.+|.. ++++|++|++++|. ++.++.. .+..++ +|++|+++++ .++.+.|.. ..+++|+
T Consensus 5 l~ls~n-~l~~ip~~-~~~~L~~L~Ls~n~-i~~~~~~------~~~~l~--~L~~L~Ls~n-~l~~~~~~~~~~l~~L~ 72 (520)
T 2z7x_B 5 VDRSKN-GLIHVPKD-LSQKTTILNISQNY-ISELWTS------DILSLS--KLRILIISHN-RIQYLDISVFKFNQELE 72 (520)
T ss_dssp EECTTS-CCSSCCCS-CCTTCSEEECCSSC-CCCCCHH------HHTTCT--TCCEEECCSS-CCCEEEGGGGTTCTTCC
T ss_pred EecCCC-Cccccccc-ccccccEEECCCCc-ccccChh------hccccc--cccEEecCCC-ccCCcChHHhhcccCCC
Confidence 445554 56666643 34777777777776 5655543 345566 7777777773 455552323 5566666
Q ss_pred ceecc----------cCCCcceEEEecCCCCchh--chhccCCCCcccEEEccc
Q 043298 81 SLEVG----------NLPSSVKVLDVYGCPKLES--IAERLDNNTSLETISIYN 122 (357)
Q Consensus 81 ~L~l~----------~l~~~L~~L~l~~c~~~~~--~~~~~~~~~~L~~L~l~~ 122 (357)
.|+++ .+++ |++|++++ +.++. +|..++.+.+|++|++++
T Consensus 73 ~L~Ls~N~l~~lp~~~l~~-L~~L~L~~-N~l~~~~~p~~~~~l~~L~~L~L~~ 124 (520)
T 2z7x_B 73 YLDLSHNKLVKISCHPTVN-LKHLDLSF-NAFDALPICKEFGNMSQLKFLGLST 124 (520)
T ss_dssp EEECCSSCCCEEECCCCCC-CSEEECCS-SCCSSCCCCGGGGGCTTCCEEEEEE
T ss_pred EEecCCCceeecCccccCC-ccEEeccC-CccccccchhhhccCCcceEEEecC
Confidence 66666 3455 67777776 34443 334444455566666665
No 25
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=5.9e-21 Score=172.41 Aligned_cols=285 Identities=15% Similarity=0.135 Sum_probs=210.0
Q ss_pred ccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCCCCCCcccceecccCCCcceEEEecCCC
Q 043298 21 SLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKYELPATLESLEVGNLPSSVKVLDVYGCP 100 (357)
Q Consensus 21 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~l~~~L~~L~l~~c~ 100 (357)
+++.++++++. ++.+|.. + .+ ++++|+++++ .++.+ +... +. .+++ |++|++++ +
T Consensus 32 ~l~~l~~~~~~-l~~lp~~------~---~~--~l~~L~L~~n-~i~~~-~~~~-~~--------~l~~-L~~L~L~~-n 86 (330)
T 1xku_A 32 HLRVVQCSDLG-LEKVPKD------L---PP--DTALLDLQNN-KITEI-KDGD-FK--------NLKN-LHTLILIN-N 86 (330)
T ss_dssp ETTEEECTTSC-CCSCCCS------C---CT--TCCEEECCSS-CCCCB-CTTT-TT--------TCTT-CCEEECCS-S
T ss_pred CCeEEEecCCC-ccccCcc------C---CC--CCeEEECCCC-cCCEe-Chhh-hc--------cCCC-CCEEECCC-C
Confidence 78999998876 7888875 2 24 7999999994 57776 5421 22 3455 99999998 4
Q ss_pred Cchhc-hhccCCCCcccEEEcccccCccccCccccCccccceeecccCCCccccCC-CCcCcccccEEEeecCCCcc--c
Q 043298 101 KLESI-AERLDNNTSLETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSFPE-GGLPCAKLRRLGIYDCERLE--A 176 (357)
Q Consensus 101 ~~~~~-~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~--~ 176 (357)
.++.+ |..++.+.+|++|++++ +.++.+|..+. ++|++|++++| .+..++. .+..+++|+.|++++|.... .
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 162 (330)
T 1xku_A 87 KISKISPGAFAPLVKLERLYLSK-NQLKELPEKMP--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSSGI 162 (330)
T ss_dssp CCCCBCTTTTTTCTTCCEEECCS-SCCSBCCSSCC--TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCGGGB
T ss_pred cCCeeCHHHhcCCCCCCEEECCC-CcCCccChhhc--ccccEEECCCC-cccccCHhHhcCCccccEEECCCCcCCccCc
Confidence 66666 55555667799999998 67888887654 79999999985 4555553 46778999999999876532 4
Q ss_pred ccccccCCCCCceEEecC-ccCCccCCCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeecCCCCCCcCcccc
Q 043298 177 LPKGLHNLSSLQELTIGG-ELPSLEEDGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDMVSFPLED 255 (357)
Q Consensus 177 ~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~~~~~~ 255 (357)
.+..+..+++|++|++++ .++.++... .++|++|++++| .++...+. .+..+++|+.|++++ +.+..++...
T Consensus 163 ~~~~~~~l~~L~~L~l~~n~l~~l~~~~-~~~L~~L~l~~n-~l~~~~~~---~~~~l~~L~~L~Ls~--n~l~~~~~~~ 235 (330)
T 1xku_A 163 ENGAFQGMKKLSYIRIADTNITTIPQGL-PPSLTELHLDGN-KITKVDAA---SLKGLNNLAKLGLSF--NSISAVDNGS 235 (330)
T ss_dssp CTTGGGGCTTCCEEECCSSCCCSCCSSC-CTTCSEEECTTS-CCCEECTG---GGTTCTTCCEEECCS--SCCCEECTTT
T ss_pred ChhhccCCCCcCEEECCCCccccCCccc-cccCCEEECCCC-cCCccCHH---HhcCCCCCCEEECCC--CcCceeChhh
Confidence 556888999999999999 888877543 489999999995 45555443 578899999999999 4566555422
Q ss_pred ccccCCCCCCCCccEEEcCccccCcccccccccccccCeeccccCCCCcccCCCCC--------ccCCceEEecCChhhH
Q 043298 256 KRLGTALPLPASLTSLWIEDFPNLEHLSSSIVDLQNLTSLGLYNCPKLKYFPEKGL--------PSSLLLLWIEGCPLIE 327 (357)
Q Consensus 256 ~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--------~~~L~~L~i~~c~~l~ 327 (357)
+..+++|++|+++++ .+..+|.++..+++|++|++.+ +.++.++...+ .+.++.|++.+.+--.
T Consensus 236 ------~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~-N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 236 ------LANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHN-NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp ------GGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCS-SCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred ------ccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCC-CcCCccChhhcCCcccccccccccceEeecCcccc
Confidence 246789999999994 7889998889999999999998 46888766433 3678899999877432
Q ss_pred HHhhcCCCccccccCCcceEEEeeE
Q 043298 328 EKCRKDGGQYWDLLTHIPYVVIDWK 352 (357)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (357)
.. .....+.....+..+++.++
T Consensus 308 ~~---i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 308 WE---IQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp GG---SCGGGGTTCCCGGGEEC---
T ss_pred cc---cCccccccccceeEEEeccc
Confidence 11 11234555667777777654
No 26
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=1e-21 Score=177.20 Aligned_cols=219 Identities=23% Similarity=0.304 Sum_probs=185.1
Q ss_pred CCCcceEEEecCCCCchhchhccCCCCcccEEEcccccCccccCccccCccccceeecccCCCccccCCCCcCcccccEE
Q 043298 87 LPSSVKVLDVYGCPKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSFPEGGLPCAKLRRL 166 (357)
Q Consensus 87 l~~~L~~L~l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L 166 (357)
.+. +++|++++ +.++.+|..++.+.+|++|++++ +.+..+|..++.+++|+.|++++| .+..+|..+..+++|+.|
T Consensus 80 ~~~-l~~L~L~~-n~l~~lp~~l~~l~~L~~L~L~~-n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 80 QPG-RVALELRS-VPLPQFPDQAFRLSHLQHMTIDA-AGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLREL 155 (328)
T ss_dssp STT-CCEEEEES-SCCSSCCSCGGGGTTCSEEEEES-SCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEE
T ss_pred ccc-eeEEEccC-CCchhcChhhhhCCCCCEEECCC-CCccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEE
Confidence 355 99999999 67888888776677899999998 678899999999999999999995 566888888899999999
Q ss_pred EeecCCCcccccccccC---------CCCCceEEecC-ccCCccC-CCCCCccceEEecCCcchhhhhhhcccccCCCCC
Q 043298 167 GIYDCERLEALPKGLHN---------LSSLQELTIGG-ELPSLEE-DGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSS 235 (357)
Q Consensus 167 ~l~~~~~~~~~~~~~~~---------l~~L~~L~l~~-~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~ 235 (357)
++++|+..+.+|..+.. +++|++|++++ .++.+|. .+.+++|++|++++| .+..+++ .+..+++
T Consensus 156 ~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N-~l~~l~~----~l~~l~~ 230 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNS-PLSALGP----AIHHLPK 230 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESS-CCCCCCG----GGGGCTT
T ss_pred ECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCC-CCCcCch----hhccCCC
Confidence 99999999988877654 99999999999 7777765 556789999999995 4555553 4688999
Q ss_pred cceEEeecCCCCCCcCccccccccCCCCCCCCccEEEcCccccCcccccccccccccCeeccccCCCCcccCCC-CCccC
Q 043298 236 LGHLKIGGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLEHLSSSIVDLQNLTSLGLYNCPKLKYFPEK-GLPSS 314 (357)
Q Consensus 236 L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~ 314 (357)
|++|++++ |.....++... ..+++|++|++++|+....+|..+..+++|++|++++|+.++.+|.. +.+++
T Consensus 231 L~~L~Ls~-n~~~~~~p~~~-------~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~ 302 (328)
T 4fcg_A 231 LEELDLRG-CTALRNYPPIF-------GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302 (328)
T ss_dssp CCEEECTT-CTTCCBCCCCT-------TCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCT
T ss_pred CCEEECcC-CcchhhhHHHh-------cCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccC
Confidence 99999999 77777777655 57889999999999888999988999999999999999988888873 33677
Q ss_pred CceEEecC
Q 043298 315 LLLLWIEG 322 (357)
Q Consensus 315 L~~L~i~~ 322 (357)
|+.+++..
T Consensus 303 L~~l~l~~ 310 (328)
T 4fcg_A 303 NCIILVPP 310 (328)
T ss_dssp TCEEECCG
T ss_pred ceEEeCCH
Confidence 88887763
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.87 E-value=1.2e-20 Score=182.73 Aligned_cols=105 Identities=24% Similarity=0.208 Sum_probs=73.3
Q ss_pred ceeccCCcccccccc--ccccccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCCCCCCcc
Q 043298 2 LSIKHCRSLTYIAAV--QLPSSLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKYELPATL 79 (357)
Q Consensus 2 l~~~~c~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L 79 (357)
|+++++ .++.++.. ..+++|++|++++|. ++.++.. .+..++ +|++|++++ +.++.+ |.. .+++|
T Consensus 57 L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~------~~~~l~--~L~~L~Ls~-N~l~~l-p~~-~l~~L 123 (562)
T 3a79_B 57 LSLSQN-SISELRMPDISFLSELRVLRLSHNR-IRSLDFH------VFLFNQ--DLEYLDVSH-NRLQNI-SCC-PMASL 123 (562)
T ss_dssp EECCSS-CCCCCCGGGTTTCTTCCEEECCSCC-CCEECTT------TTTTCT--TCCEEECTT-SCCCEE-CSC-CCTTC
T ss_pred EECCCC-CccccChhhhccCCCccEEECCCCC-CCcCCHH------HhCCCC--CCCEEECCC-CcCCcc-Ccc-ccccC
Confidence 455555 45566543 347889999999886 7777655 567777 899999998 567877 776 78888
Q ss_pred cceecc--------------cCCCcceEEEecCCCCchhchhccCCCCcc--cEEEcccc
Q 043298 80 ESLEVG--------------NLPSSVKVLDVYGCPKLESIAERLDNNTSL--ETISIYNC 123 (357)
Q Consensus 80 ~~L~l~--------------~l~~~L~~L~l~~c~~~~~~~~~~~~~~~L--~~L~l~~c 123 (357)
+.|+++ .+++ |++|++++ +.++..... ...+| ++|+++++
T Consensus 124 ~~L~Ls~N~l~~l~~p~~~~~l~~-L~~L~L~~-n~l~~~~~~--~l~~L~L~~L~L~~n 179 (562)
T 3a79_B 124 RHLDLSFNDFDVLPVCKEFGNLTK-LTFLGLSA-AKFRQLDLL--PVAHLHLSCILLDLV 179 (562)
T ss_dssp SEEECCSSCCSBCCCCGGGGGCTT-CCEEEEEC-SBCCTTTTG--GGTTSCEEEEEEEES
T ss_pred CEEECCCCCccccCchHhhcccCc-ccEEecCC-CccccCchh--hhhhceeeEEEeecc
Confidence 888887 4566 89999998 555542211 22234 88888884
No 28
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.87 E-value=3e-21 Score=187.00 Aligned_cols=107 Identities=23% Similarity=0.182 Sum_probs=47.0
Q ss_pred CCccceEEecCCcchhhhhhhcccccCCCCCcceEEeecCCCCCCcCccccccccCCCCCCCCccEEEcCccccC-cccc
Q 043298 205 PTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNL-EHLS 283 (357)
Q Consensus 205 ~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l-~~i~ 283 (357)
+++|++|++++|. +...++. ..+..+++|++|++++ |.-....+.. +..+++|++|++++|... ..+|
T Consensus 395 l~~L~~L~l~~n~-l~~~~~~--~~~~~l~~L~~L~l~~-n~l~~~~~~~-------~~~l~~L~~L~l~~n~l~~~~~p 463 (570)
T 2z63_A 395 LEQLEHLDFQHSN-LKQMSEF--SVFLSLRNLIYLDISH-THTRVAFNGI-------FNGLSSLEVLKMAGNSFQENFLP 463 (570)
T ss_dssp CTTCCEEECTTSE-EESCTTS--CTTTTCTTCCEEECTT-SCCEECCTTT-------TTTCTTCCEEECTTCEEGGGEEC
T ss_pred cCCCCEEEccCCc-cccccch--hhhhcCCCCCEEeCcC-Ccccccchhh-------hhcCCcCcEEECcCCcCccccch
Confidence 4455555555532 2222211 1345555666666655 3211111111 134455555555554321 1344
Q ss_pred cccccccccCeeccccCCCCcccCCC--CCccCCceEEecCC
Q 043298 284 SSIVDLQNLTSLGLYNCPKLKYFPEK--GLPSSLLLLWIEGC 323 (357)
Q Consensus 284 ~~~~~~~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c 323 (357)
..+..+++|++|++.+| +++.+.+. +.+++|++|++++|
T Consensus 464 ~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n 504 (570)
T 2z63_A 464 DIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASN 504 (570)
T ss_dssp SCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred hhhhcccCCCEEECCCC-ccccCChhhhhcccCCCEEeCCCC
Confidence 45555555555555553 34343221 12345555555554
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=1.2e-20 Score=177.81 Aligned_cols=275 Identities=19% Similarity=0.137 Sum_probs=190.8
Q ss_pred ceeccCCccccccccccccccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCCCCCCcccc
Q 043298 2 LSIKHCRSLTYIAAVQLPSSLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKYELPATLES 81 (357)
Q Consensus 2 l~~~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~ 81 (357)
|+++++ +++.++....+++|++|++++|. ++.+|. ..++ +|++|+++++ .++.+ + ...+++|+.
T Consensus 47 L~Ls~n-~l~~~~~l~~l~~L~~L~Ls~n~-l~~~~~---------~~l~--~L~~L~Ls~N-~l~~~-~-~~~l~~L~~ 110 (457)
T 3bz5_A 47 LDCHNS-SITDMTGIEKLTGLTKLICTSNN-ITTLDL---------SQNT--NLTYLACDSN-KLTNL-D-VTPLTKLTY 110 (457)
T ss_dssp EECCSS-CCCCCTTGGGCTTCSEEECCSSC-CSCCCC---------TTCT--TCSEEECCSS-CCSCC-C-CTTCTTCCE
T ss_pred EEccCC-CcccChhhcccCCCCEEEccCCc-CCeEcc---------ccCC--CCCEEECcCC-CCcee-e-cCCCCcCCE
Confidence 456665 56666666668999999999987 777652 5566 8999999984 57776 5 566788888
Q ss_pred eecc----------cCCCcceEEEecCCCCchhchhccCCCCcccEEEcccccCccccCccccCccccceeecccCCCcc
Q 043298 82 LEVG----------NLPSSVKVLDVYGCPKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREIWIRECGNLV 151 (357)
Q Consensus 82 L~l~----------~l~~~L~~L~l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~ 151 (357)
|+++ .+++ |++|++++ +.++.++ .+.+.+|++|++++|..+..+ .+..+++|+.|++++| .++
T Consensus 111 L~L~~N~l~~l~~~~l~~-L~~L~l~~-N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n-~l~ 183 (457)
T 3bz5_A 111 LNCDTNKLTKLDVSQNPL-LTYLNCAR-NTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN-KIT 183 (457)
T ss_dssp EECCSSCCSCCCCTTCTT-CCEEECTT-SCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS-CCC
T ss_pred EECCCCcCCeecCCCCCc-CCEEECCC-Cccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC-ccc
Confidence 8887 6678 99999998 5677764 335667999999997677766 4678899999999885 566
Q ss_pred ccCCCCcCcccccEEEeecCCCcccccccccCCCCCceEEecC-ccCCccCCCCCCccceEEecCCcchhhhhhhccccc
Q 043298 152 SFPEGGLPCAKLRRLGIYDCERLEALPKGLHNLSSLQELTIGG-ELPSLEEDGLPTNLHSLDIWGNMEIWKSMIERGRGF 230 (357)
Q Consensus 152 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l 230 (357)
.+| +..+++|+.|++++|. ++.+ .++.+++|++|++++ .++.+| .+.+++|+.|++++| .++..+.
T Consensus 184 ~l~--l~~l~~L~~L~l~~N~-l~~~--~l~~l~~L~~L~Ls~N~l~~ip-~~~l~~L~~L~l~~N-~l~~~~~------ 250 (457)
T 3bz5_A 184 ELD--VSQNKLLNRLNCDTNN-ITKL--DLNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVN-PLTELDV------ 250 (457)
T ss_dssp CCC--CTTCTTCCEEECCSSC-CSCC--CCTTCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSS-CCSCCCC------
T ss_pred eec--cccCCCCCEEECcCCc-CCee--ccccCCCCCEEECcCCcccccC-ccccCCCCEEEeeCC-cCCCcCH------
Confidence 666 6677899999998855 4444 478889999999988 777777 667789999999985 4554442
Q ss_pred CCCCCcceEEeecC---------CCCCCcCccccccccCCCCCCCCccEEEcCccccCcccccc--------cccccccC
Q 043298 231 HRFSSLGHLKIGGC---------DDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLEHLSSS--------IVDLQNLT 293 (357)
Q Consensus 231 ~~~~~L~~L~l~~~---------c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~--------~~~~~~L~ 293 (357)
..+++|+.|++++. |.....++. ..+++|+.|++++|..+..+|.. +.++++|+
T Consensus 251 ~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~---------~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~ 321 (457)
T 3bz5_A 251 STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQA---------EGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLV 321 (457)
T ss_dssp TTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC---------TTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCC
T ss_pred HHCCCCCEEeccCCCCCEEECCCCccCCcccc---------cccccCCEEECCCCcccceeccCCCcceEechhhcccCC
Confidence 34455555444430 332333321 35578888888888766666531 23344555
Q ss_pred eeccccCCCCcccCCCCCccCCceEEecCC
Q 043298 294 SLGLYNCPKLKYFPEKGLPSSLLLLWIEGC 323 (357)
Q Consensus 294 ~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c 323 (357)
+|++++ ++++.++ .+.+++|+.|+++++
T Consensus 322 ~L~L~~-N~l~~l~-l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 322 YLYLNN-TELTELD-VSHNTKLKSLSCVNA 349 (457)
T ss_dssp EEECTT-CCCSCCC-CTTCTTCSEEECCSS
T ss_pred EEECCC-Ccccccc-cccCCcCcEEECCCC
Confidence 555555 3455553 234567777777654
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.87 E-value=4e-21 Score=181.09 Aligned_cols=274 Identities=15% Similarity=0.128 Sum_probs=194.1
Q ss_pred ceeccCCccccccccc--cccccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCC-CCCCc
Q 043298 2 LSIKHCRSLTYIAAVQ--LPSSLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKY-ELPAT 78 (357)
Q Consensus 2 l~~~~c~~l~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~-~~~~~ 78 (357)
|+++++ .++.+++.. .+++|++|+++++.....++.. .+..++ +|++|+++++ .++.+.|.. ..+++
T Consensus 35 L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~------~~~~l~--~L~~L~Ls~n-~l~~~~~~~~~~l~~ 104 (455)
T 3v47_A 35 VDLSLN-SIAELNETSFSRLQDLQFLKVEQQTPGLVIRNN------TFRGLS--SLIILKLDYN-QFLQLETGAFNGLAN 104 (455)
T ss_dssp EECCSS-CCCEECTTTTSSCTTCCEEECCCCSTTCEECTT------TTTTCT--TCCEEECTTC-TTCEECTTTTTTCTT
T ss_pred EEecCC-ccCcCChhHhccCccccEEECcCCcccceECcc------cccccc--cCCEEeCCCC-ccCccChhhccCccc
Confidence 556655 455554433 4889999999988743456655 567777 8999999985 466653443 66788
Q ss_pred ccceecc---------------cCCCcceEEEecCCCCchhc-hhc-cCCCCcccEEEcccccCcccc-Ccccc------
Q 043298 79 LESLEVG---------------NLPSSVKVLDVYGCPKLESI-AER-LDNNTSLETISIYNCENLKIL-PSGLH------ 134 (357)
Q Consensus 79 L~~L~l~---------------~l~~~L~~L~l~~c~~~~~~-~~~-~~~~~~L~~L~l~~c~~l~~l-~~~~~------ 134 (357)
|+.|+++ .+++ |++|++++ +.++.+ |.. .+.+.+|++|++++ +.+..+ +..+.
T Consensus 105 L~~L~L~~n~l~~~~~~~~~~~~l~~-L~~L~L~~-n~l~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~~~ 181 (455)
T 3v47_A 105 LEVLTLTQCNLDGAVLSGNFFKPLTS-LEMLVLRD-NNIKKIQPASFFLNMRRFHVLDLTF-NKVKSICEEDLLNFQGKH 181 (455)
T ss_dssp CCEEECTTSCCBTHHHHSSTTTTCTT-CCEEECCS-SBCCSCCCCGGGGGCTTCCEEECTT-CCBSCCCTTTSGGGTTCE
T ss_pred CCEEeCCCCCCCccccCcccccCccc-CCEEECCC-CccCccCcccccCCCCcccEEeCCC-CcccccChhhhhcccccc
Confidence 8888887 4567 99999998 456655 433 34556689999888 445433 22222
Q ss_pred ----------------------------CccccceeecccCCCccccCC-------------------------------
Q 043298 135 ----------------------------KLHQLREIWIRECGNLVSFPE------------------------------- 155 (357)
Q Consensus 135 ----------------------------~l~~L~~L~l~~~~~l~~~~~------------------------------- 155 (357)
.+++|++|++++|......|.
T Consensus 182 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 261 (455)
T 3v47_A 182 FTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNF 261 (455)
T ss_dssp EEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSS
T ss_pred ccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhh
Confidence 236788888887643221110
Q ss_pred ------CC--cCcccccEEEeecCCCcccccccccCCCCCceEEecC-ccCCccC--CCCCCccceEEecCCcchhhhhh
Q 043298 156 ------GG--LPCAKLRRLGIYDCERLEALPKGLHNLSSLQELTIGG-ELPSLEE--DGLPTNLHSLDIWGNMEIWKSMI 224 (357)
Q Consensus 156 ------~~--~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~ 224 (357)
.+ ...++|+.|++++|......|..++.+++|++|++++ .++.++. ...+++|+.|++++| .+..+++
T Consensus 262 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~ 340 (455)
T 3v47_A 262 KDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-FLGSIDS 340 (455)
T ss_dssp CCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECG
T ss_pred ccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCC-ccCCcCh
Confidence 00 1136899999999877777788899999999999999 7766543 456799999999995 5565544
Q ss_pred hcccccCCCCCcceEEeecCCCCCCcCccccccccCCCCCCCCccEEEcCccccCccccc-ccccccccCeeccccCC
Q 043298 225 ERGRGFHRFSSLGHLKIGGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLEHLSS-SIVDLQNLTSLGLYNCP 301 (357)
Q Consensus 225 ~~~~~l~~~~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~c~ 301 (357)
. .+..+++|++|++++ +.+..++... +..+++|++|++++ +.++.+|. .+..+++|++|++.+++
T Consensus 341 ~---~~~~l~~L~~L~Ls~--N~l~~~~~~~------~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 341 R---MFENLDKLEVLDLSY--NHIRALGDQS------FLGLPNLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp G---GGTTCTTCCEEECCS--SCCCEECTTT------TTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred h---HhcCcccCCEEECCC--CcccccChhh------ccccccccEEECCC-CccccCCHhHhccCCcccEEEccCCC
Confidence 3 578899999999999 4555553322 35789999999999 57777775 45789999999999864
No 31
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.87 E-value=1.2e-20 Score=190.84 Aligned_cols=150 Identities=20% Similarity=0.201 Sum_probs=97.4
Q ss_pred ccccccccccccccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCC--CCCCcccceecc-
Q 043298 9 SLTYIAAVQLPSSLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKY--ELPATLESLEVG- 85 (357)
Q Consensus 9 ~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~--~~~~~L~~L~l~- 85 (357)
+++.+|. .+++|++|++++|. ++.++.. .+..++ +|++|++++|.....+ ++. ..+++|+.|+++
T Consensus 15 ~L~~vP~--lp~~l~~LdLs~N~-i~~i~~~------~~~~l~--~L~~LdLs~n~~~~~i-~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 15 NLTQVPQ--VLNTTERLLLSFNY-IRTVTAS------SFPFLE--QLQLLELGSQYTPLTI-DKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp CSSCCCS--SCTTCCEEEEESCC-CCEECSS------SCSSCC--SCSEEEECTTCCCCEE-CTTTTSSCTTCCEEECTT
T ss_pred CCCCCCC--CCCCcCEEECCCCc-CCccChh------HCcccc--cCeEEeCCCCCCcccc-CHHHhcCCCCCCEEECCC
Confidence 6778887 78899999999887 7777655 567788 9999999997666665 333 667778887777
Q ss_pred ------------cCCCcceEEEecCCCCchh-chhc--cCCCCcccEEEcccccCcccc--CccccCccccceeecccCC
Q 043298 86 ------------NLPSSVKVLDVYGCPKLES-IAER--LDNNTSLETISIYNCENLKIL--PSGLHKLHQLREIWIRECG 148 (357)
Q Consensus 86 ------------~l~~~L~~L~l~~c~~~~~-~~~~--~~~~~~L~~L~l~~c~~l~~l--~~~~~~l~~L~~L~l~~~~ 148 (357)
.+++ |++|++++| .++. ++.. .+.+.+|++|++++ +.+..+ +..++++++|++|++++|.
T Consensus 83 N~l~~~~p~~~~~l~~-L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~-N~l~~~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFH-LFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSK-NQIRSLYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp CCCCEECTTSSCSCSS-CCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEES-CCCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred CcCcccCHhHccCCcc-cCEeeCcCC-CCCcccccCccccccCCCCEEECCC-CcccccccchhHhhCCCCCEEECCCCc
Confidence 5666 888888874 4443 3332 34556688888877 455544 2456777888888877754
Q ss_pred CccccCCCCcCc--ccccEEEeecCCC
Q 043298 149 NLVSFPEGGLPC--AKLRRLGIYDCER 173 (357)
Q Consensus 149 ~l~~~~~~~~~l--~~L~~L~l~~~~~ 173 (357)
.....+..+..+ ++|+.|++++|..
T Consensus 160 i~~~~~~~l~~l~~~~L~~L~L~~n~l 186 (844)
T 3j0a_A 160 IFLVCEHELEPLQGKTLSFFSLAANSL 186 (844)
T ss_dssp CCCCCSGGGHHHHHCSSCCCEECCSBS
T ss_pred CCeeCHHHcccccCCccceEECCCCcc
Confidence 322222233322 3444444444433
No 32
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.86 E-value=3.6e-21 Score=185.67 Aligned_cols=108 Identities=21% Similarity=0.251 Sum_probs=66.1
Q ss_pred ceeccCCcccccccc--ccccccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCC--CCCC
Q 043298 2 LSIKHCRSLTYIAAV--QLPSSLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKY--ELPA 77 (357)
Q Consensus 2 l~~~~c~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~--~~~~ 77 (357)
|+++++ +++.+++. ..+++|++|++++|. +..++.. .+..++ +|++|+++++ .++.+ ++. ..++
T Consensus 31 L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~------~~~~l~--~L~~L~Ls~n-~l~~~-~~~~~~~l~ 98 (549)
T 2z81_A 31 LDLSFN-KITYIGHGDLRACANLQVLILKSSR-INTIEGD------AFYSLG--SLEHLDLSDN-HLSSL-SSSWFGPLS 98 (549)
T ss_dssp EECCSS-CCCEECSSTTSSCTTCCEEECTTSC-CCEECTT------TTTTCT--TCCEEECTTS-CCCSC-CHHHHTTCT
T ss_pred EECcCC-ccCccChhhhhcCCcccEEECCCCC-cCccChh------hccccc--cCCEEECCCC-ccCcc-CHHHhccCC
Confidence 455555 35555433 337788888888776 6666654 456666 7777777773 45555 332 5566
Q ss_pred cccceecc--------------cCCCcceEEEecCCCCchhchh-ccCCCCcccEEEccc
Q 043298 78 TLESLEVG--------------NLPSSVKVLDVYGCPKLESIAE-RLDNNTSLETISIYN 122 (357)
Q Consensus 78 ~L~~L~l~--------------~l~~~L~~L~l~~c~~~~~~~~-~~~~~~~L~~L~l~~ 122 (357)
+|+.|+++ .+++ |++|++++|..++.++. ..+.+.+|++|++++
T Consensus 99 ~L~~L~Ls~n~l~~~~~~~~~~~l~~-L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~ 157 (549)
T 2z81_A 99 SLKYLNLMGNPYQTLGVTSLFPNLTN-LQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA 157 (549)
T ss_dssp TCCEEECTTCCCSSSCSSCSCTTCTT-CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred CCcEEECCCCcccccchhhhhhccCC-ccEEECCCCccccccCHhhhhcccccCeeeccC
Confidence 77777766 3445 77777777544555543 233445566666666
No 33
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=1e-20 Score=170.95 Aligned_cols=284 Identities=17% Similarity=0.183 Sum_probs=210.2
Q ss_pred ccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCCCCCCcccceecccCCCcceEEEecCCC
Q 043298 21 SLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKYELPATLESLEVGNLPSSVKVLDVYGCP 100 (357)
Q Consensus 21 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~l~~~L~~L~l~~c~ 100 (357)
+++.++++++. ++.+|.. + .+ ++++|+++++ .++.+ ++.. +. .+++ |++|++++ +
T Consensus 34 ~l~~l~~~~~~-l~~ip~~------~---~~--~l~~L~l~~n-~i~~~-~~~~-~~--------~l~~-L~~L~L~~-n 88 (332)
T 2ft3_A 34 HLRVVQCSDLG-LKAVPKE------I---SP--DTTLLDLQNN-DISEL-RKDD-FK--------GLQH-LYALVLVN-N 88 (332)
T ss_dssp ETTEEECCSSC-CSSCCSC------C---CT--TCCEEECCSS-CCCEE-CTTT-TT--------TCTT-CCEEECCS-S
T ss_pred cCCEEECCCCC-ccccCCC------C---CC--CCeEEECCCC-cCCcc-CHhH-hh--------CCCC-CcEEECCC-C
Confidence 79999999886 8888876 2 24 7999999994 57776 4321 22 3455 99999999 4
Q ss_pred Cchhc-hhccCCCCcccEEEcccccCccccCccccCccccceeecccCCCccccCC-CCcCcccccEEEeecCCCc--cc
Q 043298 101 KLESI-AERLDNNTSLETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSFPE-GGLPCAKLRRLGIYDCERL--EA 176 (357)
Q Consensus 101 ~~~~~-~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~--~~ 176 (357)
.++.+ |..++.+.+|++|++++ +.++.+|..+. ++|++|++++| .+..++. .+..+++|+.|++++|... ..
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 164 (332)
T 2ft3_A 89 KISKIHEKAFSPLRKLQKLYISK-NHLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLENSGF 164 (332)
T ss_dssp CCCEECGGGSTTCTTCCEEECCS-SCCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBGGGS
T ss_pred ccCccCHhHhhCcCCCCEEECCC-CcCCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCccccCCC
Confidence 66766 44555667799999998 67888887665 89999999985 5666665 4677899999999997653 24
Q ss_pred ccccccCCCCCceEEecC-ccCCccCCCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeecCCCCCCcCcccc
Q 043298 177 LPKGLHNLSSLQELTIGG-ELPSLEEDGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDMVSFPLED 255 (357)
Q Consensus 177 ~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~~~~~~ 255 (357)
.+..+..+ +|++|++++ .++.+|.. ..++|++|++++| .++..++. .+..+++|+.|++++ +.+..++...
T Consensus 165 ~~~~~~~l-~L~~L~l~~n~l~~l~~~-~~~~L~~L~l~~n-~i~~~~~~---~l~~l~~L~~L~L~~--N~l~~~~~~~ 236 (332)
T 2ft3_A 165 EPGAFDGL-KLNYLRISEAKLTGIPKD-LPETLNELHLDHN-KIQAIELE---DLLRYSKLYRLGLGH--NQIRMIENGS 236 (332)
T ss_dssp CTTSSCSC-CCSCCBCCSSBCSSCCSS-SCSSCSCCBCCSS-CCCCCCTT---SSTTCTTCSCCBCCS--SCCCCCCTTG
T ss_pred CcccccCC-ccCEEECcCCCCCccCcc-ccCCCCEEECCCC-cCCccCHH---HhcCCCCCCEEECCC--CcCCcCChhH
Confidence 55677777 999999999 88887753 3489999999995 55555543 578899999999999 5666665422
Q ss_pred ccccCCCCCCCCccEEEcCccccCcccccccccccccCeeccccCCCCcccCCCCC--------ccCCceEEecCChhhH
Q 043298 256 KRLGTALPLPASLTSLWIEDFPNLEHLSSSIVDLQNLTSLGLYNCPKLKYFPEKGL--------PSSLLLLWIEGCPLIE 327 (357)
Q Consensus 256 ~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~--------~~~L~~L~i~~c~~l~ 327 (357)
+..+++|++|++++ +.+..+|.++..+++|++|++++ +.++.++...+ .+.|+.|++.+++...
T Consensus 237 ------~~~l~~L~~L~L~~-N~l~~lp~~l~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~ 308 (332)
T 2ft3_A 237 ------LSFLPTLRELHLDN-NKLSRVPAGLPDLKLLQVVYLHT-NNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPY 308 (332)
T ss_dssp ------GGGCTTCCEEECCS-SCCCBCCTTGGGCTTCCEEECCS-SCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCG
T ss_pred ------hhCCCCCCEEECCC-CcCeecChhhhcCccCCEEECCC-CCCCccChhHccccccccccccccceEeecCcccc
Confidence 24678999999999 57889998889999999999999 57888766432 3578999999987432
Q ss_pred HHhhcCCCccccccCCcceEEEeeE
Q 043298 328 EKCRKDGGQYWDLLTHIPYVVIDWK 352 (357)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (357)
... ....+..+.++..+.+.++
T Consensus 309 ~~~---~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 309 WEV---QPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp GGS---CGGGGTTBCCSTTEEC---
T ss_pred ccc---Ccccccccchhhhhhcccc
Confidence 111 2233555777777776654
No 34
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.86 E-value=3.4e-20 Score=183.49 Aligned_cols=185 Identities=16% Similarity=0.061 Sum_probs=81.2
Q ss_pred ccccCccccceeecccCCCccccC-CCCcCcccccEEEeecCCCcccccccccCCCCCceEEecC-ccC---CccC-CCC
Q 043298 131 SGLHKLHQLREIWIRECGNLVSFP-EGGLPCAKLRRLGIYDCERLEALPKGLHNLSSLQELTIGG-ELP---SLEE-DGL 204 (357)
Q Consensus 131 ~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~---~~~~-~~~ 204 (357)
..+..+++|+.|++++|.....++ ..+..+++|+.|++++|+.....+..+..+++|+.|++.+ .++ .+|. ...
T Consensus 399 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~ 478 (680)
T 1ziw_A 399 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP 478 (680)
T ss_dssp TTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTT
T ss_pred hhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccccc
Confidence 344556666666666544333343 2344455566666655443333333444445555555544 221 1221 233
Q ss_pred CCccceEEecCCcchhhhhhhcccccCCCCCcceEEeecCCCCCCcCccccc--cccCCCCCCCCccEEEcCccccCccc
Q 043298 205 PTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDMVSFPLEDK--RLGTALPLPASLTSLWIEDFPNLEHL 282 (357)
Q Consensus 205 ~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~~~~~~~--~~~~~~~~~~~L~~L~l~~c~~l~~i 282 (357)
+++|+.|++++| .++.+++. .+.++++|++|++++ +.+..++.... .....+..+++|+.|++++ +.+..+
T Consensus 479 l~~L~~L~Ls~N-~l~~i~~~---~~~~l~~L~~L~Ls~--N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~-N~l~~i 551 (680)
T 1ziw_A 479 LRNLTILDLSNN-NIANINDD---MLEGLEKLEILDLQH--NNLARLWKHANPGGPIYFLKGLSHLHILNLES-NGFDEI 551 (680)
T ss_dssp CTTCCEEECCSS-CCCCCCTT---TTTTCTTCCEEECCS--SCCGGGGSTTSTTSCCCTTTTCTTCCEEECCS-SCCCCC
T ss_pred CCCCCEEECCCC-CCCcCChh---hhccccccCEEeCCC--CCccccchhhccCCcchhhcCCCCCCEEECCC-CCCCCC
Confidence 455555555552 33333322 344555555555555 23332211100 0000123344555555555 344444
Q ss_pred cc-ccccccccCeeccccCCCCcccCCCC--CccCCceEEecCC
Q 043298 283 SS-SIVDLQNLTSLGLYNCPKLKYFPEKG--LPSSLLLLWIEGC 323 (357)
Q Consensus 283 ~~-~~~~~~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~i~~c 323 (357)
|. .+.++++|+.|++.+ ++++.++... .+++|+.|+++++
T Consensus 552 ~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~N 594 (680)
T 1ziw_A 552 PVEVFKDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQKN 594 (680)
T ss_dssp CTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CHHHcccccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECCCC
Confidence 43 244455555555544 3444444432 1345555555443
No 35
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.86 E-value=1.1e-20 Score=183.13 Aligned_cols=123 Identities=21% Similarity=0.254 Sum_probs=67.7
Q ss_pred cccccccccccccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCC--CCCCcccceecc--
Q 043298 10 LTYIAAVQLPSSLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKY--ELPATLESLEVG-- 85 (357)
Q Consensus 10 l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~--~~~~~L~~L~l~-- 85 (357)
++.+|. .++++++.|+++++. ++.++.. .+..++ +|++|++++| .++.+ ++. ..+++|+.|+++
T Consensus 19 l~~ip~-~l~~~l~~L~Ls~n~-l~~~~~~------~~~~l~--~L~~L~Ls~n-~i~~i-~~~~~~~l~~L~~L~L~~n 86 (570)
T 2z63_A 19 FYKIPD-NLPFSTKNLDLSFNP-LRHLGSY------SFFSFP--ELQVLDLSRC-EIQTI-EDGAYQSLSHLSTLILTGN 86 (570)
T ss_dssp CSSCCS-SSCSSCCEEECCSCC-CCEECTT------TTTTCS--SCCEEECTTC-CCCEE-CTTTTTTCTTCCEEECTTC
T ss_pred ccccCC-CccccccEEEccCCc-cCccChh------HhhCCC--CceEEECCCC-cCCcc-CcccccCchhCCEEeCcCC
Confidence 444553 345566666666665 5555544 445555 6666666664 35555 332 445566666665
Q ss_pred -----------cCCCcceEEEecCCCCchhchh-ccCCCCcccEEEcccccCccc--cCccccCccccceeecccC
Q 043298 86 -----------NLPSSVKVLDVYGCPKLESIAE-RLDNNTSLETISIYNCENLKI--LPSGLHKLHQLREIWIREC 147 (357)
Q Consensus 86 -----------~l~~~L~~L~l~~c~~~~~~~~-~~~~~~~L~~L~l~~c~~l~~--l~~~~~~l~~L~~L~l~~~ 147 (357)
.+++ |++|++++ +.++.++. .++.+.+|++|++++ +.+.. +|..++++++|++|++++|
T Consensus 87 ~l~~~~~~~~~~l~~-L~~L~L~~-n~l~~l~~~~~~~l~~L~~L~L~~-n~l~~~~lp~~~~~l~~L~~L~l~~n 159 (570)
T 2z63_A 87 PIQSLALGAFSGLSS-LQKLVAVE-TNLASLENFPIGHLKTLKELNVAH-NLIQSFKLPEYFSNLTNLEHLDLSSN 159 (570)
T ss_dssp CCCEECTTTTTTCTT-CCEEECTT-SCCCCSTTCSCTTCTTCCEEECCS-SCCCCCCCCGGGGGCTTCCEEECTTS
T ss_pred cCCccCHhhhcCccc-cccccccc-cccccCCCccccccccccEEecCC-CccceecChhhhcccCCCCEEeCcCC
Confidence 3455 66666666 34554443 223445566666666 34443 4555566666666666554
No 36
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.86 E-value=5.1e-20 Score=186.32 Aligned_cols=292 Identities=16% Similarity=0.128 Sum_probs=182.5
Q ss_pred ceeccCCccccccccc--cccccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCC-CCCCc
Q 043298 2 LSIKHCRSLTYIAAVQ--LPSSLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKY-ELPAT 78 (357)
Q Consensus 2 l~~~~c~~l~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~-~~~~~ 78 (357)
|+++++ .++.+.... .+++|+.|++++|.....++.. .+..++ +|++|+++++ .++.+.|.. ..+++
T Consensus 29 LdLs~N-~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~------~f~~L~--~L~~L~Ls~N-~l~~~~p~~~~~l~~ 98 (844)
T 3j0a_A 29 LLLSFN-YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKE------AFRNLP--NLRILDLGSS-KIYFLHPDAFQGLFH 98 (844)
T ss_dssp EEEESC-CCCEECSSSCSSCCSCSEEEECTTCCCCEECTT------TTSSCT--TCCEEECTTC-CCCEECTTSSCSCSS
T ss_pred EECCCC-cCCccChhHCcccccCeEEeCCCCCCccccCHH------HhcCCC--CCCEEECCCC-cCcccCHhHccCCcc
Confidence 566665 456655433 3899999999999767777655 578888 9999999984 566663444 77889
Q ss_pred ccceecc---------------cCCCcceEEEecCCCCchhch--hccCCCCcccEEEcccccCccc-cCccccCc--cc
Q 043298 79 LESLEVG---------------NLPSSVKVLDVYGCPKLESIA--ERLDNNTSLETISIYNCENLKI-LPSGLHKL--HQ 138 (357)
Q Consensus 79 L~~L~l~---------------~l~~~L~~L~l~~c~~~~~~~--~~~~~~~~L~~L~l~~c~~l~~-l~~~~~~l--~~ 138 (357)
|+.|+++ .+++ |++|++++| .++.++ ..++.+.+|++|++++ +.++. .+..+..+ ++
T Consensus 99 L~~L~Ls~n~l~~~~~~~~~~~~L~~-L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~-N~i~~~~~~~l~~l~~~~ 175 (844)
T 3j0a_A 99 LFELRLYFCGLSDAVLKDGYFRNLKA-LTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSS-NQIFLVCEHELEPLQGKT 175 (844)
T ss_dssp CCCEECTTCCCSSCCSTTCCCSSCSS-CCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEES-SCCCCCCSGGGHHHHHCS
T ss_pred cCEeeCcCCCCCcccccCccccccCC-CCEEECCCC-cccccccchhHhhCCCCCEEECCC-CcCCeeCHHHcccccCCc
Confidence 9999887 4567 999999994 555543 3345677899999998 55554 35556555 78
Q ss_pred cceeecccCCCccccCCCCcCccc------ccEEEeecCCCcccccccc-------------------------------
Q 043298 139 LREIWIRECGNLVSFPEGGLPCAK------LRRLGIYDCERLEALPKGL------------------------------- 181 (357)
Q Consensus 139 L~~L~l~~~~~l~~~~~~~~~l~~------L~~L~l~~~~~~~~~~~~~------------------------------- 181 (357)
|+.|++++|......|..+..+++ |+.|++++|......+..+
T Consensus 176 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~ 255 (844)
T 3j0a_A 176 LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP 255 (844)
T ss_dssp SCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTG
T ss_pred cceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCC
Confidence 888888886655555554444444 8888887764332222211
Q ss_pred -----cC--CCCCceEEecC-ccCCccC--CCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeecCCCCCCcC
Q 043298 182 -----HN--LSSLQELTIGG-ELPSLEE--DGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDMVSF 251 (357)
Q Consensus 182 -----~~--l~~L~~L~l~~-~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~~ 251 (357)
.. .++|+.|++++ .+..++. ...+++|+.|++++| .+..+.+. .+..+++|+.|++++ +.+..+
T Consensus 256 ~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~---~~~~l~~L~~L~Ls~--N~l~~~ 329 (844)
T 3j0a_A 256 DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN-KINKIADE---AFYGLDNLQVLNLSY--NLLGEL 329 (844)
T ss_dssp GGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESC-CCCEECTT---TTTTCSSCCEEEEES--CCCSCC
T ss_pred ChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCC-cCCCCChH---HhcCCCCCCEEECCC--CCCCcc
Confidence 11 24566777666 4443322 344567777777774 34444332 456677777777777 344444
Q ss_pred ccccccccCCCCCCCCccEEEcCccccCccccc-ccccccccCeeccccCCCCcccCCCCCccCCceEEecCC
Q 043298 252 PLEDKRLGTALPLPASLTSLWIEDFPNLEHLSS-SIVDLQNLTSLGLYNCPKLKYFPEKGLPSSLLLLWIEGC 323 (357)
Q Consensus 252 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c 323 (357)
.... +..+++|+.|+++++ .+..++. .+..+++|++|+++++ .++.++. +++|+.|+++++
T Consensus 330 ~~~~------~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~---~~~L~~L~l~~N 391 (844)
T 3j0a_A 330 YSSN------FYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDN-ALTTIHF---IPSIPDIFLSGN 391 (844)
T ss_dssp CSCS------CSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETC-CSCCCSS---CCSCSEEEEESC
T ss_pred CHHH------hcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCC-CCCcccC---CCCcchhccCCC
Confidence 2211 245667777777773 4555543 3566677777777763 4444433 345555555443
No 37
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.86 E-value=1.8e-20 Score=183.03 Aligned_cols=265 Identities=15% Similarity=0.090 Sum_probs=172.9
Q ss_pred cccccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCCCCCCcccceecccCCCcceEEEec
Q 043298 18 LPSSLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKYELPATLESLEVGNLPSSVKVLDVY 97 (357)
Q Consensus 18 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~l~~~L~~L~l~ 97 (357)
.+++|+.|+++++. +..+| . +..++ +|++|++.+|. +..+ |.. .++. |++|+++
T Consensus 283 ~l~~L~~L~l~~~~-~~~l~-~-------l~~~~--~L~~L~l~~n~-l~~l-p~~------------~l~~-L~~L~l~ 336 (606)
T 3vq2_A 283 CLANVSAMSLAGVS-IKYLE-D-------VPKHF--KWQSLSIIRCQ-LKQF-PTL------------DLPF-LKSLTLT 336 (606)
T ss_dssp GGTTCSEEEEESCC-CCCCC-C-------CCTTC--CCSEEEEESCC-CSSC-CCC------------CCSS-CCEEEEE
T ss_pred cCCCCCEEEecCcc-chhhh-h-------ccccc--cCCEEEccccc-Cccc-ccC------------CCCc-cceeecc
Confidence 36778888887776 56666 2 25555 78888888754 3555 522 2444 7888888
Q ss_pred CCCCchhchhccCCCCcccEEEcccccCcccc---CccccCccccceeecccCCCccccCCCCcCcccccEEEeecCCCc
Q 043298 98 GCPKLESIAERLDNNTSLETISIYNCENLKIL---PSGLHKLHQLREIWIRECGNLVSFPEGGLPCAKLRRLGIYDCERL 174 (357)
Q Consensus 98 ~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l---~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~ 174 (357)
+|.....++. +.+.+|++|++++ +.++.+ +..+..+++|+.|++++| .+..+|..+..+++|+.|++++|...
T Consensus 337 ~n~~~~~~~~--~~l~~L~~L~ls~-n~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~l~~n~l~ 412 (606)
T 3vq2_A 337 MNKGSISFKK--VALPSLSYLDLSR-NALSFSGCCSYSDLGTNSLRHLDLSFN-GAIIMSANFMGLEELQHLDFQHSTLK 412 (606)
T ss_dssp SCSSCEECCC--CCCTTCCEEECCS-SCEEEEEECCHHHHCCSCCCEEECCSC-SEEEECCCCTTCTTCCEEECTTSEEE
T ss_pred CCcCccchhh--ccCCCCCEEECcC-CccCCCcchhhhhccCCcccEeECCCC-ccccchhhccCCCCCCeeECCCCccC
Confidence 7645544422 2445588888887 455544 566677888888888875 46667766777788888888876655
Q ss_pred cccc-ccccCCCCCceEEecC-ccCCc-cC-CCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeecCCCCCCc
Q 043298 175 EALP-KGLHNLSSLQELTIGG-ELPSL-EE-DGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDMVS 250 (357)
Q Consensus 175 ~~~~-~~~~~l~~L~~L~l~~-~~~~~-~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~ 250 (357)
...+ ..+..+++|++|++++ .+... +. ...+++|++|++++|.......+ ..+..+++|++|++++ | .+..
T Consensus 413 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~~l~~L~~L~Ls~-n-~l~~ 487 (606)
T 3vq2_A 413 RVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS---NVFANTTNLTFLDLSK-C-QLEQ 487 (606)
T ss_dssp STTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEEC---SCCTTCTTCCEEECTT-S-CCCE
T ss_pred CccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchH---HhhccCCCCCEEECCC-C-cCCc
Confidence 5544 4677788888888877 44432 22 45567888888888543332232 2567788888888888 4 4444
Q ss_pred CccccccccCCCCCCCCccEEEcCccccCcccccccccccccCeeccccCCCCcccCCC--CCccCCceEEecCCh
Q 043298 251 FPLEDKRLGTALPLPASLTSLWIEDFPNLEHLSSSIVDLQNLTSLGLYNCPKLKYFPEK--GLPSSLLLLWIEGCP 324 (357)
Q Consensus 251 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~i~~c~ 324 (357)
++... +..+++|++|++++|.-....|..+..+++|++|++++| +++.+|.. .++.+|+.|++++++
T Consensus 488 ~~~~~------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 488 ISWGV------FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp ECTTT------TTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEECCSCC
T ss_pred cChhh------hcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEEccCCC
Confidence 43321 246778888888885333334667777888888888884 57777664 122368888887643
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.86 E-value=1.2e-20 Score=174.26 Aligned_cols=269 Identities=13% Similarity=0.122 Sum_probs=165.0
Q ss_pred cCCccEEEEecCCCccccccCC--CCCCcccceecc-------------cCCCcceEEEecCCCCchhchhc-cCCCCcc
Q 043298 52 SSLLEELFVFNCDSLTCIFSKY--ELPATLESLEVG-------------NLPSSVKVLDVYGCPKLESIAER-LDNNTSL 115 (357)
Q Consensus 52 ~~~L~~L~l~~c~~l~~~~~~~--~~~~~L~~L~l~-------------~l~~~L~~L~l~~c~~~~~~~~~-~~~~~~L 115 (357)
+++++.|++.+ +.++.+ |.. ..+++|+.|+++ .+++ |++|++++ +.++.+++. .+.+.+|
T Consensus 44 l~~l~~l~l~~-~~l~~l-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~-L~~L~L~~-n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 44 LNNQKIVTFKN-STMRKL-PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHT-IQKLYMGF-NAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp GCCCSEEEEES-CEESEE-CTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTT-CCEEECCS-SCCCCCCTTTTTTCTTC
T ss_pred cCCceEEEecC-CchhhC-ChhHhcccccCcEEECCCCcccccChhhccCCCC-cCEEECCC-CCCCcCCHHHhcCCCCC
Confidence 44999999999 468887 764 446677777776 5566 77888877 455655443 3445567
Q ss_pred cEEEcccccCccccCcc-ccCccccceeecccCCCccccC-CCCcCcccccEEEeecCCCcccccccccCCCCCceEEe-
Q 043298 116 ETISIYNCENLKILPSG-LHKLHQLREIWIRECGNLVSFP-EGGLPCAKLRRLGIYDCERLEALPKGLHNLSSLQELTI- 192 (357)
Q Consensus 116 ~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l- 192 (357)
++|++++ +.++.+|.. +..+++|++|++++|. +..++ ..+..+++|+.|++++|.. +.+ .++.+++|+.+++
T Consensus 120 ~~L~L~~-n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l-~~~--~~~~l~~L~~L~l~ 194 (390)
T 3o6n_A 120 TVLVLER-NDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRL-THV--DLSLIPSLFHANVS 194 (390)
T ss_dssp CEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCC-SBC--CGGGCTTCSEEECC
T ss_pred CEEECCC-CccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcC-Ccc--ccccccccceeecc
Confidence 8888877 566666655 3677778888887753 44443 4466677788888777543 222 1233344444443
Q ss_pred ------------------cC-ccCCccCCCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeecCCCCCCcCcc
Q 043298 193 ------------------GG-ELPSLEEDGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDMVSFPL 253 (357)
Q Consensus 193 ------------------~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~~~~ 253 (357)
.+ .+..++. ..+++|+.|++++| .++..+ .+..+++|++|++++ +.+..+..
T Consensus 195 ~n~l~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~L~~L~l~~n-~l~~~~-----~l~~l~~L~~L~Ls~--n~l~~~~~ 265 (390)
T 3o6n_A 195 YNLLSTLAIPIAVEELDASHNSINVVRG-PVNVELTILKLQHN-NLTDTA-----WLLNYPGLVEVDLSY--NELEKIMY 265 (390)
T ss_dssp SSCCSEEECCSSCSEEECCSSCCCEEEC-CCCSSCCEEECCSS-CCCCCG-----GGGGCTTCSEEECCS--SCCCEEES
T ss_pred cccccccCCCCcceEEECCCCeeeeccc-cccccccEEECCCC-CCcccH-----HHcCCCCccEEECCC--CcCCCcCh
Confidence 33 3333322 22356677777664 334333 356777888888887 34444422
Q ss_pred ccccccCCCCCCCCccEEEcCccccCcccccccccccccCeeccccCCCCcccCCC-CCccCCceEEecCChhhHHHhhc
Q 043298 254 EDKRLGTALPLPASLTSLWIEDFPNLEHLSSSIVDLQNLTSLGLYNCPKLKYFPEK-GLPSSLLLLWIEGCPLIEEKCRK 332 (357)
Q Consensus 254 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~~l~~~~~~ 332 (357)
.. +..+++|++|++++ +.+..++..+..+++|++|++++| .++.++.. +.+++|++|++++|. ++.+
T Consensus 266 ~~------~~~l~~L~~L~L~~-n~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~-i~~~--- 333 (390)
T 3o6n_A 266 HP------FVKMQRLERLYISN-NRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS-IVTL--- 333 (390)
T ss_dssp GG------GTTCSSCCEEECCS-SCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCC---
T ss_pred hH------ccccccCCEEECCC-CcCcccCcccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCc-ccee---
Confidence 11 24677888888887 467777766667788888888875 56666542 225778888888765 2211
Q ss_pred CCCccccccCCcceEEEeeEEe
Q 043298 333 DGGQYWDLLTHIPYVVIDWKWV 354 (357)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~ 354 (357)
.......+..+.+.++.+
T Consensus 334 ----~~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 334 ----KLSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp ----CCCTTCCCSEEECCSSCE
T ss_pred ----CchhhccCCEEEcCCCCc
Confidence 133455666777665543
No 39
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.86 E-value=5.1e-20 Score=182.21 Aligned_cols=255 Identities=18% Similarity=0.153 Sum_probs=186.9
Q ss_pred CccEEEEecCCCccccccCC--CCCCcccceeccc-----------------CCCcceEEEecCCCCchhc-hhccCCCC
Q 043298 54 LLEELFVFNCDSLTCIFSKY--ELPATLESLEVGN-----------------LPSSVKVLDVYGCPKLESI-AERLDNNT 113 (357)
Q Consensus 54 ~L~~L~l~~c~~l~~~~~~~--~~~~~L~~L~l~~-----------------l~~~L~~L~l~~c~~~~~~-~~~~~~~~ 113 (357)
+|++|+++++ .++.+ ++. ..+++|+.|+++. .+. |++|++++| .++.+ +.....+.
T Consensus 330 ~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~-L~~L~L~~n-~l~~~~~~~~~~l~ 405 (680)
T 1ziw_A 330 CLEHLNMEDN-DIPGI-KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSP-LHILNLTKN-KISKIESDAFSWLG 405 (680)
T ss_dssp TCCEEECCSC-CBCCC-CTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSC-CCEEECTTS-CCCEECTTTTTTCT
T ss_pred CCCEEECCCC-ccCCC-ChhHhccccCCcEEECCCCchhhhhcchhhhcccccCc-CceEECCCC-CCCeEChhhhhCCC
Confidence 6666666663 44554 332 4566777777651 135 778888874 45554 33444567
Q ss_pred cccEEEcccccCcc-ccC-ccccCccccceeecccCCCccccCCCCcCcccccEEEeecCCCc--ccccccccCCCCCce
Q 043298 114 SLETISIYNCENLK-ILP-SGLHKLHQLREIWIRECGNLVSFPEGGLPCAKLRRLGIYDCERL--EALPKGLHNLSSLQE 189 (357)
Q Consensus 114 ~L~~L~l~~c~~l~-~l~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~ 189 (357)
+|+.|++++ +.+. .++ ..+.++++|+.|++++|......+..+..+++|+.|++++|... ...|..++.+++|+.
T Consensus 406 ~L~~L~L~~-N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~ 484 (680)
T 1ziw_A 406 HLEVLDLGL-NEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI 484 (680)
T ss_dssp TCCEEECCS-SCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCE
T ss_pred CCCEEeCCC-CcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCE
Confidence 799999999 4554 455 56788999999999997544444456778999999999987643 567888999999999
Q ss_pred EEecC-ccCCccC--CCCCCccceEEecCCcchhhhhhh-----cccccCCCCCcceEEeecCCCCCCcCccccccccCC
Q 043298 190 LTIGG-ELPSLEE--DGLPTNLHSLDIWGNMEIWKSMIE-----RGRGFHRFSSLGHLKIGGCDDDMVSFPLEDKRLGTA 261 (357)
Q Consensus 190 L~l~~-~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~-----~~~~l~~~~~L~~L~l~~~c~~l~~~~~~~~~~~~~ 261 (357)
|++++ .++.++. ...+++|+.|++++| .++.++.. +...+..+++|+.|++++ +.+..++...
T Consensus 485 L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~--N~l~~i~~~~------ 555 (680)
T 1ziw_A 485 LDLSNNNIANINDDMLEGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLES--NGFDEIPVEV------ 555 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTTCTTCCEEECCS--SCCCCCCTTT------
T ss_pred EECCCCCCCcCChhhhccccccCEEeCCCC-CccccchhhccCCcchhhcCCCCCCEEECCC--CCCCCCCHHH------
Confidence 99999 7877765 455799999999995 45544321 001368889999999999 5777777643
Q ss_pred CCCCCCccEEEcCccccCcccccc-cccccccCeeccccCCCCcccCCCC---CccCCceEEecCCh
Q 043298 262 LPLPASLTSLWIEDFPNLEHLSSS-IVDLQNLTSLGLYNCPKLKYFPEKG---LPSSLLLLWIEGCP 324 (357)
Q Consensus 262 ~~~~~~L~~L~l~~c~~l~~i~~~-~~~~~~L~~L~l~~c~~l~~l~~~~---~~~~L~~L~i~~c~ 324 (357)
+..+++|+.|++++ +.++.+|.. +..+++|+.|++++ ++++.++... .+++|+.|+++++|
T Consensus 556 ~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~~~~~L~~l~l~~N~ 620 (680)
T 1ziw_A 556 FKDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQK-NLITSVEKKVFGPAFRNLTELDMRFNP 620 (680)
T ss_dssp TTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTT-SCCCBCCHHHHHHHHTTCSEEECTTCC
T ss_pred cccccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECCC-CcCCccChhHhcccccccCEEEccCCC
Confidence 35789999999998 678888764 57889999999999 4788877642 35799999998754
No 40
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.85 E-value=1.3e-19 Score=163.65 Aligned_cols=271 Identities=16% Similarity=0.208 Sum_probs=189.7
Q ss_pred ccccccccccccccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCCCCCCcccceecccCC
Q 043298 9 SLTYIAAVQLPSSLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKYELPATLESLEVGNLP 88 (357)
Q Consensus 9 ~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~l~ 88 (357)
+++.+|. .++++|+.|+++++. ++.++.. .+..++ +|++|+++++ .++.+ ++. .+. .++
T Consensus 42 ~l~~lp~-~~~~~l~~L~L~~n~-i~~~~~~------~~~~l~--~L~~L~L~~n-~l~~~-~~~-~~~--------~l~ 100 (330)
T 1xku_A 42 GLEKVPK-DLPPDTALLDLQNNK-ITEIKDG------DFKNLK--NLHTLILINN-KISKI-SPG-AFA--------PLV 100 (330)
T ss_dssp CCCSCCC-SCCTTCCEEECCSSC-CCCBCTT------TTTTCT--TCCEEECCSS-CCCCB-CTT-TTT--------TCT
T ss_pred CccccCc-cCCCCCeEEECCCCc-CCEeChh------hhccCC--CCCEEECCCC-cCCee-CHH-Hhc--------CCC
Confidence 3444543 356899999999987 8888876 577888 9999999994 56666 322 112 344
Q ss_pred CcceEEEecCCCCchhchhccCCCCcccEEEcccccCccccCc-cccCccccceeecccCCCcc--ccCCCCcCcccccE
Q 043298 89 SSVKVLDVYGCPKLESIAERLDNNTSLETISIYNCENLKILPS-GLHKLHQLREIWIRECGNLV--SFPEGGLPCAKLRR 165 (357)
Q Consensus 89 ~~L~~L~l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~~~~l~--~~~~~~~~l~~L~~ 165 (357)
+ |++|++++ +.++.+|... . .+|++|++++ +.++.++. .+..+++|+.|++++|.... ..+..+..+++|+.
T Consensus 101 ~-L~~L~Ls~-n~l~~l~~~~-~-~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~ 175 (330)
T 1xku_A 101 K-LERLYLSK-NQLKELPEKM-P-KTLQELRVHE-NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY 175 (330)
T ss_dssp T-CCEEECCS-SCCSBCCSSC-C-TTCCEEECCS-SCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCE
T ss_pred C-CCEEECCC-CcCCccChhh-c-ccccEEECCC-CcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCE
Confidence 4 89999998 5778887765 3 5699999988 56766654 46788999999998865422 34455677889999
Q ss_pred EEeecCCCcccccccccCCCCCceEEecC-ccCCccC--CCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEee
Q 043298 166 LGIYDCERLEALPKGLHNLSSLQELTIGG-ELPSLEE--DGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIG 242 (357)
Q Consensus 166 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~ 242 (357)
|++++|. ++.+|..+. ++|++|++++ .++.++. ...+++|+.|++++| .++..++. .+..+++|++|+++
T Consensus 176 L~l~~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~---~~~~l~~L~~L~L~ 248 (330)
T 1xku_A 176 IRIADTN-ITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-SISAVDNG---SLANTPHLRELHLN 248 (330)
T ss_dssp EECCSSC-CCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS-CCCEECTT---TGGGSTTCCEEECC
T ss_pred EECCCCc-cccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC-cCceeChh---hccCCCCCCEEECC
Confidence 9998854 556665553 7899999988 6665532 556788999999985 45555432 46788999999999
Q ss_pred cCCCCCCcCccccccccCCCCCCCCccEEEcCccccCcccccc-cc------cccccCeeccccCCCCcc--cCCC--CC
Q 043298 243 GCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLEHLSSS-IV------DLQNLTSLGLYNCPKLKY--FPEK--GL 311 (357)
Q Consensus 243 ~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~-~~------~~~~L~~L~l~~c~~l~~--l~~~--~~ 311 (357)
+ +.+..++... ..+++|++|++++ +.++.++.. +. ..+.++.+++.+++ +.. +++. ..
T Consensus 249 ~--N~l~~lp~~l-------~~l~~L~~L~l~~-N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~-~~~~~i~~~~f~~ 317 (330)
T 1xku_A 249 N--NKLVKVPGGL-------ADHKYIQVVYLHN-NNISAIGSNDFCPPGYNTKKASYSGVSLFSNP-VQYWEIQPSTFRC 317 (330)
T ss_dssp S--SCCSSCCTTT-------TTCSSCCEEECCS-SCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS-SCGGGSCGGGGTT
T ss_pred C--CcCccCChhh-------ccCCCcCEEECCC-CcCCccChhhcCCcccccccccccceEeecCc-ccccccCcccccc
Confidence 9 4677777655 5778999999998 467766532 22 23678888888844 433 3322 22
Q ss_pred ccCCceEEecCC
Q 043298 312 PSSLLLLWIEGC 323 (357)
Q Consensus 312 ~~~L~~L~i~~c 323 (357)
+.+++.++++++
T Consensus 318 ~~~l~~l~L~~N 329 (330)
T 1xku_A 318 VYVRAAVQLGNY 329 (330)
T ss_dssp CCCGGGEEC---
T ss_pred ccceeEEEeccc
Confidence 567888888764
No 41
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=5.8e-20 Score=166.07 Aligned_cols=271 Identities=17% Similarity=0.194 Sum_probs=195.5
Q ss_pred ccccccccccccccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCCCCCCcccceecccCC
Q 043298 9 SLTYIAAVQLPSSLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKYELPATLESLEVGNLP 88 (357)
Q Consensus 9 ~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~l~ 88 (357)
+++.+|. .++++|+.|+++++. +..++.. .+..++ +|++|+++++ .++.+ ++. . +..++
T Consensus 44 ~l~~ip~-~~~~~l~~L~l~~n~-i~~~~~~------~~~~l~--~L~~L~L~~n-~l~~~-~~~-~--------~~~l~ 102 (332)
T 2ft3_A 44 GLKAVPK-EISPDTTLLDLQNND-ISELRKD------DFKGLQ--HLYALVLVNN-KISKI-HEK-A--------FSPLR 102 (332)
T ss_dssp CCSSCCS-CCCTTCCEEECCSSC-CCEECTT------TTTTCT--TCCEEECCSS-CCCEE-CGG-G--------STTCT
T ss_pred CccccCC-CCCCCCeEEECCCCc-CCccCHh------HhhCCC--CCcEEECCCC-ccCcc-CHh-H--------hhCcC
Confidence 4555554 346899999999987 8888765 577888 9999999995 56666 222 1 22455
Q ss_pred CcceEEEecCCCCchhchhccCCCCcccEEEcccccCccccCc-cccCccccceeecccCCCcc--ccCCCCcCcccccE
Q 043298 89 SSVKVLDVYGCPKLESIAERLDNNTSLETISIYNCENLKILPS-GLHKLHQLREIWIRECGNLV--SFPEGGLPCAKLRR 165 (357)
Q Consensus 89 ~~L~~L~l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~~~~l~--~~~~~~~~l~~L~~ 165 (357)
+ |++|++++ +.++.+|... . .+|++|++++ +.++.++. .+..+++|+.|++++|.... ..+..+..+ +|+.
T Consensus 103 ~-L~~L~L~~-n~l~~l~~~~-~-~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~ 176 (332)
T 2ft3_A 103 K-LQKLYISK-NHLVEIPPNL-P-SSLVELRIHD-NRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNY 176 (332)
T ss_dssp T-CCEEECCS-SCCCSCCSSC-C-TTCCEEECCS-SCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSC
T ss_pred C-CCEEECCC-CcCCccCccc-c-ccCCEEECCC-CccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCE
Confidence 5 99999998 6788888776 3 6699999998 67777765 47889999999999865421 334455555 8999
Q ss_pred EEeecCCCcccccccccCCCCCceEEecC-ccCCccC--CCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEee
Q 043298 166 LGIYDCERLEALPKGLHNLSSLQELTIGG-ELPSLEE--DGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIG 242 (357)
Q Consensus 166 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~ 242 (357)
|++++|. ++.+|..+. ++|++|++++ .++.++. ...+++|+.|++++| .+..+++. .+..+++|++|+++
T Consensus 177 L~l~~n~-l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~---~~~~l~~L~~L~L~ 249 (332)
T 2ft3_A 177 LRISEAK-LTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN-QIRMIENG---SLSFLPTLRELHLD 249 (332)
T ss_dssp CBCCSSB-CSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSS-CCCCCCTT---GGGGCTTCCEEECC
T ss_pred EECcCCC-CCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC-cCCcCChh---HhhCCCCCCEEECC
Confidence 9999854 556766554 7899999998 7776653 556789999999995 55555542 56888999999999
Q ss_pred cCCCCCCcCccccccccCCCCCCCCccEEEcCccccCcccccc-ccc------ccccCeeccccCCCCc--ccCCC--CC
Q 043298 243 GCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLEHLSSS-IVD------LQNLTSLGLYNCPKLK--YFPEK--GL 311 (357)
Q Consensus 243 ~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~-~~~------~~~L~~L~l~~c~~l~--~l~~~--~~ 311 (357)
+ +.+..+|... ..+++|+.|++++ +.++.++.. +.. .+.++.+++.+++ +. .+++. ..
T Consensus 250 ~--N~l~~lp~~l-------~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~-~~~~~~~~~~~~~ 318 (332)
T 2ft3_A 250 N--NKLSRVPAGL-------PDLKLLQVVYLHT-NNITKVGVNDFCPVGFGVKRAYYNGISLFNNP-VPYWEVQPATFRC 318 (332)
T ss_dssp S--SCCCBCCTTG-------GGCTTCCEEECCS-SCCCBCCTTSSSCSSCCSSSCCBSEEECCSSS-SCGGGSCGGGGTT
T ss_pred C--CcCeecChhh-------hcCccCCEEECCC-CCCCccChhHccccccccccccccceEeecCc-ccccccCcccccc
Confidence 9 5677887765 4778999999999 567776532 222 4678899999864 43 23332 23
Q ss_pred ccCCceEEecCCh
Q 043298 312 PSSLLLLWIEGCP 324 (357)
Q Consensus 312 ~~~L~~L~i~~c~ 324 (357)
+++|+.++++++.
T Consensus 319 l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 319 VTDRLAIQFGNYK 331 (332)
T ss_dssp BCCSTTEEC----
T ss_pred cchhhhhhccccc
Confidence 6789999988764
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=3.1e-20 Score=180.97 Aligned_cols=268 Identities=12% Similarity=0.088 Sum_probs=188.5
Q ss_pred cCCccEEEEecCCCccccccCC--CCCCcccceecc-------------cCCCcceEEEecCCCCchhchhcc-CCCCcc
Q 043298 52 SSLLEELFVFNCDSLTCIFSKY--ELPATLESLEVG-------------NLPSSVKVLDVYGCPKLESIAERL-DNNTSL 115 (357)
Q Consensus 52 ~~~L~~L~l~~c~~l~~~~~~~--~~~~~L~~L~l~-------------~l~~~L~~L~l~~c~~~~~~~~~~-~~~~~L 115 (357)
+.+++.+++.+ +.++.+ |+. ..+++|+.|+++ .++. |++|++++ +.++.+++.. +.+.+|
T Consensus 50 l~~l~~l~l~~-~~l~~l-p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~-n~l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 50 LNNQKIVTFKN-STMRKL-PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHT-IQKLYMGF-NAIRYLPPHVFQNVPLL 125 (597)
T ss_dssp GCCCSEEEESS-CEESEE-CTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTT-CCEEECCS-SCCCCCCTTTTTTCTTC
T ss_pred CCCceEEEeeC-CCCCCc-CHHHHccCCCCcEEECCCCCCCCCChHHhcCCCC-CCEEECCC-CcCCCCCHHHHcCCCCC
Confidence 44899999999 467777 764 457889999988 6778 99999999 4677776543 567779
Q ss_pred cEEEcccccCccccCcc-ccCccccceeecccCCCccccCCCCcCcccccEEEeecCCCcccccccccCCCCCceEEecC
Q 043298 116 ETISIYNCENLKILPSG-LHKLHQLREIWIRECGNLVSFPEGGLPCAKLRRLGIYDCERLEALPKGLHNLSSLQELTIGG 194 (357)
Q Consensus 116 ~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 194 (357)
++|++++ +.+..+|.. ++.+++|+.|++++|......|..+..+++|+.|++++|.. ..++ ++.+++|+.|++.+
T Consensus 126 ~~L~L~~-n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~--~~~l~~L~~L~l~~ 201 (597)
T 3oja_B 126 TVLVLER-NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THVD--LSLIPSLFHANVSY 201 (597)
T ss_dssp CEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCC-SBCC--GGGCTTCSEEECCS
T ss_pred CEEEeeC-CCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCC-CCcC--hhhhhhhhhhhccc
Confidence 9999999 678888766 48999999999999654333445688899999999998654 3332 33445555555544
Q ss_pred --------------------ccCCccCCCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeecCCCCCCcC-cc
Q 043298 195 --------------------ELPSLEEDGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDMVSF-PL 253 (357)
Q Consensus 195 --------------------~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~~-~~ 253 (357)
.+..++. ..+++|+.|++++| .++..+ .+..+++|+.|++++ +.+..+ +.
T Consensus 202 n~l~~l~~~~~L~~L~ls~n~l~~~~~-~~~~~L~~L~L~~n-~l~~~~-----~l~~l~~L~~L~Ls~--N~l~~~~~~ 272 (597)
T 3oja_B 202 NLLSTLAIPIAVEELDASHNSINVVRG-PVNVELTILKLQHN-NLTDTA-----WLLNYPGLVEVDLSY--NELEKIMYH 272 (597)
T ss_dssp SCCSEEECCTTCSEEECCSSCCCEEEC-SCCSCCCEEECCSS-CCCCCG-----GGGGCTTCSEEECCS--SCCCEEESG
T ss_pred CccccccCCchhheeeccCCccccccc-ccCCCCCEEECCCC-CCCCCh-----hhccCCCCCEEECCC--CccCCCCHH
Confidence 3333332 23367888888874 344433 357788899999988 445444 33
Q ss_pred ccccccCCCCCCCCccEEEcCccccCcccccccccccccCeeccccCCCCcccCCC-CCccCCceEEecCChhhHHHhhc
Q 043298 254 EDKRLGTALPLPASLTSLWIEDFPNLEHLSSSIVDLQNLTSLGLYNCPKLKYFPEK-GLPSSLLLLWIEGCPLIEEKCRK 332 (357)
Q Consensus 254 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~~l~~~~~~ 332 (357)
.+ ..+++|+.|++++ +.+..+|..+..+++|+.|++++| .++.+|.. +.+++|+.|++++|.- +.
T Consensus 273 ~~-------~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N~l-~~---- 338 (597)
T 3oja_B 273 PF-------VKMQRLERLYISN-NRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNSI-VT---- 338 (597)
T ss_dssp GG-------TTCSSCCEEECTT-SCCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSCC-CC----
T ss_pred Hh-------cCccCCCEEECCC-CCCCCCCcccccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCCCC-CC----
Confidence 33 5778899999998 567778877777889999999885 56666652 2367899999988752 11
Q ss_pred CCCccccccCCcceEEEeeEE
Q 043298 333 DGGQYWDLLTHIPYVVIDWKW 353 (357)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~ 353 (357)
........+..+.+.++.
T Consensus 339 ---~~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 339 ---LKLSTHHTLKNLTLSHND 356 (597)
T ss_dssp ---CCCCTTCCCSEEECCSSC
T ss_pred ---cChhhcCCCCEEEeeCCC
Confidence 113345566777775554
No 43
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.84 E-value=2.7e-19 Score=168.31 Aligned_cols=271 Identities=28% Similarity=0.334 Sum_probs=170.0
Q ss_pred ceeccCCccccccccccccccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCCCCCCcccc
Q 043298 2 LSIKHCRSLTYIAAVQLPSSLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKYELPATLES 81 (357)
Q Consensus 2 l~~~~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~ 81 (357)
|++++| +++.+|. .+++|++|+++++. ++.+|.. .. +|++|++++ +.++.+ +. .+++|+.
T Consensus 76 L~l~~~-~l~~lp~--~~~~L~~L~l~~n~-l~~lp~~----------~~--~L~~L~l~~-n~l~~l-~~--~~~~L~~ 135 (454)
T 1jl5_A 76 LELNNL-GLSSLPE--LPPHLESLVASCNS-LTELPEL----------PQ--SLKSLLVDN-NNLKAL-SD--LPPLLEY 135 (454)
T ss_dssp EECTTS-CCSCCCS--CCTTCSEEECCSSC-CSSCCCC----------CT--TCCEEECCS-SCCSCC-CS--CCTTCCE
T ss_pred EEecCC-ccccCCC--CcCCCCEEEccCCc-CCccccc----------cC--CCcEEECCC-CccCcc-cC--CCCCCCE
Confidence 445555 3555544 45778888887776 6666643 13 677777776 345554 42 2256666
Q ss_pred eecc-----------cCCCcceEEEecCCCCchhchhccCCCCcccEEEcccccCccccCccccCccccceeecccCCCc
Q 043298 82 LEVG-----------NLPSSVKVLDVYGCPKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREIWIRECGNL 150 (357)
Q Consensus 82 L~l~-----------~l~~~L~~L~l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l 150 (357)
|+++ .+++ |++|++++ +.++.+|.. +.+|++|++++ +.++.+| .++.+++|+.|++++| .+
T Consensus 136 L~L~~n~l~~lp~~~~l~~-L~~L~l~~-N~l~~lp~~---~~~L~~L~L~~-n~l~~l~-~~~~l~~L~~L~l~~N-~l 207 (454)
T 1jl5_A 136 LGVSNNQLEKLPELQNSSF-LKIIDVDN-NSLKKLPDL---PPSLEFIAAGN-NQLEELP-ELQNLPFLTAIYADNN-SL 207 (454)
T ss_dssp EECCSSCCSSCCCCTTCTT-CCEEECCS-SCCSCCCCC---CTTCCEEECCS-SCCSSCC-CCTTCTTCCEEECCSS-CC
T ss_pred EECcCCCCCCCcccCCCCC-CCEEECCC-CcCcccCCC---cccccEEECcC-CcCCcCc-cccCCCCCCEEECCCC-cC
Confidence 6665 4556 78888887 466666653 34588888877 5666666 5777888888888774 44
Q ss_pred cccCCCCcCcccccEEEeecCCCcccccccccCCCCCceEEecC-ccCCccCCCCCCccceEEecCCcchhhhhhhcccc
Q 043298 151 VSFPEGGLPCAKLRRLGIYDCERLEALPKGLHNLSSLQELTIGG-ELPSLEEDGLPTNLHSLDIWGNMEIWKSMIERGRG 229 (357)
Q Consensus 151 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 229 (357)
..+|... ++|+.|++++|. +..+| .++.+++|++|++++ .++.++. .+++|+.|++++| .++.++
T Consensus 208 ~~l~~~~---~~L~~L~l~~n~-l~~lp-~~~~l~~L~~L~l~~N~l~~l~~--~~~~L~~L~l~~N-~l~~l~------ 273 (454)
T 1jl5_A 208 KKLPDLP---LSLESIVAGNNI-LEELP-ELQNLPFLTTIYADNNLLKTLPD--LPPSLEALNVRDN-YLTDLP------ 273 (454)
T ss_dssp SSCCCCC---TTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSSCCSSCCS--CCTTCCEEECCSS-CCSCCC------
T ss_pred CcCCCCc---CcccEEECcCCc-CCccc-ccCCCCCCCEEECCCCcCCcccc--cccccCEEECCCC-cccccC------
Confidence 5555432 478888887754 44666 477788888888877 6666653 3467777777774 344433
Q ss_pred cCCCCCcceEEeecCCCCCCcCccccccc----------cCCCCCCCCccEEEcCccccCcccccccccccccCeecccc
Q 043298 230 FHRFSSLGHLKIGGCDDDMVSFPLEDKRL----------GTALPLPASLTSLWIEDFPNLEHLSSSIVDLQNLTSLGLYN 299 (357)
Q Consensus 230 l~~~~~L~~L~l~~~c~~l~~~~~~~~~~----------~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~ 299 (357)
...++|+.|++++ +.+..++.....+ ...-..+++|++|++++ +.+..+|. .+++|++|++.+
T Consensus 274 -~~~~~L~~L~ls~--N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~-N~l~~lp~---~~~~L~~L~L~~ 346 (454)
T 1jl5_A 274 -ELPQSLTFLDVSE--NIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSN-NKLIELPA---LPPRLERLIASF 346 (454)
T ss_dssp -CCCTTCCEEECCS--SCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCS-SCCSCCCC---CCTTCCEEECCS
T ss_pred -cccCcCCEEECcC--CccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCC-Cccccccc---cCCcCCEEECCC
Confidence 1235666666666 2333322110000 00012335788888888 46666773 368889999988
Q ss_pred CCCCcccCCCCCccCCceEEecCCh
Q 043298 300 CPKLKYFPEKGLPSSLLLLWIEGCP 324 (357)
Q Consensus 300 c~~l~~l~~~~~~~~L~~L~i~~c~ 324 (357)
| +++.+|. .+++|+.|+++++.
T Consensus 347 N-~l~~lp~--~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 347 N-HLAEVPE--LPQNLKQLHVEYNP 368 (454)
T ss_dssp S-CCSCCCC--CCTTCCEEECCSSC
T ss_pred C-ccccccc--hhhhccEEECCCCC
Confidence 4 6778877 57889999998864
No 44
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.84 E-value=3.6e-20 Score=168.88 Aligned_cols=269 Identities=17% Similarity=0.156 Sum_probs=162.7
Q ss_pred ccccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCCCCCCcccceecccCCCcceEEEecC
Q 043298 19 PSSLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKYELPATLESLEVGNLPSSVKVLDVYG 98 (357)
Q Consensus 19 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~l~~~L~~L~l~~ 98 (357)
++.....+.+++. ++.+|.. +. + +|++|++++ +.++.+ +... +. .+++ |++|++++
T Consensus 30 C~~~~~c~~~~~~-l~~iP~~------~~---~--~L~~L~l~~-n~i~~~-~~~~-~~--------~l~~-L~~L~L~~ 85 (353)
T 2z80_A 30 CDRNGICKGSSGS-LNSIPSG------LT---E--AVKSLDLSN-NRITYI-SNSD-LQ--------RCVN-LQALVLTS 85 (353)
T ss_dssp ECTTSEEECCSTT-CSSCCTT------CC---T--TCCEEECTT-SCCCEE-CTTT-TT--------TCTT-CCEEECTT
T ss_pred CCCCeEeeCCCCC-ccccccc------cc---c--cCcEEECCC-CcCccc-CHHH-hc--------cCCC-CCEEECCC
Confidence 3444556666554 6667654 22 3 577777777 346665 4321 11 2344 77777777
Q ss_pred CCCchhchh-ccCCCCcccEEEcccccCccccCcc-ccCccccceeecccCCCccccCC--CCcCcccccEEEeecCCCc
Q 043298 99 CPKLESIAE-RLDNNTSLETISIYNCENLKILPSG-LHKLHQLREIWIRECGNLVSFPE--GGLPCAKLRRLGIYDCERL 174 (357)
Q Consensus 99 c~~~~~~~~-~~~~~~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~~~~l~~~~~--~~~~l~~L~~L~l~~~~~~ 174 (357)
+.++.++. ..+.+.+|++|++++ +.++.++.. +..+++|++|++++| .+..+|. .+..+++|+.|++++|+.+
T Consensus 86 -n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~ 162 (353)
T 2z80_A 86 -NGINTIEEDSFSSLGSLEHLDLSY-NYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTF 162 (353)
T ss_dssp -SCCCEECTTTTTTCTTCCEEECCS-SCCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSC
T ss_pred -CccCccCHhhcCCCCCCCEEECCC-CcCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccc
Confidence 45555543 233455677777777 566666654 567777777777774 4555654 4566777777777776555
Q ss_pred ccc-cccccCCCCCceEEecC-ccCCcc--CCCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeecCCCCCCc
Q 043298 175 EAL-PKGLHNLSSLQELTIGG-ELPSLE--EDGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDMVS 250 (357)
Q Consensus 175 ~~~-~~~~~~l~~L~~L~l~~-~~~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~ 250 (357)
+.+ +..++.+++|++|++++ .++.+. ....+++|++|++++|. +..++.. .+..+++|+.|++++ +.+..
T Consensus 163 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~---~~~~~~~L~~L~L~~--n~l~~ 236 (353)
T 2z80_A 163 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLLEI---FVDVTSSVECLELRD--TDLDT 236 (353)
T ss_dssp CEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC-STTHHHH---HHHHTTTEEEEEEES--CBCTT
T ss_pred cccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc-cccchhh---hhhhcccccEEECCC--Ccccc
Confidence 554 34667777777777776 554432 24456778888887744 4444432 344567888888888 44444
Q ss_pred CccccccccCCCCCCCCccEEEcCccc----cCcccccccccccccCeeccccCCCCcccCCCC--CccCCceEEecCCh
Q 043298 251 FPLEDKRLGTALPLPASLTSLWIEDFP----NLEHLSSSIVDLQNLTSLGLYNCPKLKYFPEKG--LPSSLLLLWIEGCP 324 (357)
Q Consensus 251 ~~~~~~~~~~~~~~~~~L~~L~l~~c~----~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~i~~c~ 324 (357)
++.... ........++.++++++. .+..+|..+..+++|++|+++++ +++.+|... .+++|++|++++++
T Consensus 237 ~~~~~l---~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 237 FHFSEL---STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CCCC---------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cccccc---ccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence 432210 001234556677776642 22346666778888888888884 677777643 36788888888764
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.84 E-value=1.3e-20 Score=168.81 Aligned_cols=246 Identities=16% Similarity=0.110 Sum_probs=161.5
Q ss_pred CccEEEEecCCCccc--cccCCCCCCcccceecccCCCcceEEEecCCCCch-hchhccCCCCcccEEEcccccCcc-cc
Q 043298 54 LLEELFVFNCDSLTC--IFSKYELPATLESLEVGNLPSSVKVLDVYGCPKLE-SIAERLDNNTSLETISIYNCENLK-IL 129 (357)
Q Consensus 54 ~L~~L~l~~c~~l~~--~~~~~~~~~~L~~L~l~~l~~~L~~L~l~~c~~~~-~~~~~~~~~~~L~~L~l~~c~~l~-~l 129 (357)
++++|+++++ .++. ..|.. +..++. |++|++++++.+. .+|..++.+.+|++|++++ +.+. .+
T Consensus 51 ~l~~L~L~~~-~l~~~~~~~~~----------l~~l~~-L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~-n~l~~~~ 117 (313)
T 1ogq_A 51 RVNNLDLSGL-NLPKPYPIPSS----------LANLPY-LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH-TNVSGAI 117 (313)
T ss_dssp CEEEEEEECC-CCSSCEECCGG----------GGGCTT-CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEE-ECCEEEC
T ss_pred eEEEEECCCC-CccCCcccChh----------HhCCCC-CCeeeCCCCCcccccCChhHhcCCCCCEEECcC-CeeCCcC
Confidence 6778888874 3443 11321 223445 8888887434444 5565555566688888887 4554 66
Q ss_pred CccccCccccceeecccCCCccccCCCCcCcccccEEEeecCCCcccccccccCCC-CCceEEecC-ccC-CccC-CCCC
Q 043298 130 PSGLHKLHQLREIWIRECGNLVSFPEGGLPCAKLRRLGIYDCERLEALPKGLHNLS-SLQELTIGG-ELP-SLEE-DGLP 205 (357)
Q Consensus 130 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~-~~~-~~~~-~~~~ 205 (357)
|..+..+++|++|++++|.....+|..+..+++|++|++++|.....+|..++.++ +|++|++++ .++ .++. ...+
T Consensus 118 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l 197 (313)
T 1ogq_A 118 PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL 197 (313)
T ss_dssp CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC
T ss_pred CHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC
Confidence 77777888888888887544346666677778888888887665557777777777 788888877 444 2332 2233
Q ss_pred CccceEEecCCcchhhhhhhcccccCCCCCcceEEeecCCCCCCcCccccccccCCCCCCCCccEEEcCccccCcccccc
Q 043298 206 TNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLEHLSSS 285 (357)
Q Consensus 206 ~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~ 285 (357)
+ |+.|++++| .+....+. .+..+++|+.|++++ +.+....... ..+++|++|+++++.--..+|..
T Consensus 198 ~-L~~L~Ls~N-~l~~~~~~---~~~~l~~L~~L~L~~--N~l~~~~~~~-------~~l~~L~~L~Ls~N~l~~~~p~~ 263 (313)
T 1ogq_A 198 N-LAFVDLSRN-MLEGDASV---LFGSDKNTQKIHLAK--NSLAFDLGKV-------GLSKNLNGLDLRNNRIYGTLPQG 263 (313)
T ss_dssp C-CSEEECCSS-EEEECCGG---GCCTTSCCSEEECCS--SEECCBGGGC-------CCCTTCCEEECCSSCCEECCCGG
T ss_pred c-ccEEECcCC-cccCcCCH---HHhcCCCCCEEECCC--CceeeecCcc-------cccCCCCEEECcCCcccCcCChH
Confidence 3 888888885 34433332 567788888888888 3444333223 46678888888885433367777
Q ss_pred cccccccCeeccccCCCCc-ccCCCCCccCCceEEecCChhhH
Q 043298 286 IVDLQNLTSLGLYNCPKLK-YFPEKGLPSSLLLLWIEGCPLIE 327 (357)
Q Consensus 286 ~~~~~~L~~L~l~~c~~l~-~l~~~~~~~~L~~L~i~~c~~l~ 327 (357)
+..+++|++|+++++ .++ .+|..+.+++|+.+++.+++.+.
T Consensus 264 l~~l~~L~~L~Ls~N-~l~~~ip~~~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 264 LTQLKFLHSLNVSFN-NLCGEIPQGGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp GGGCTTCCEEECCSS-EEEEECCCSTTGGGSCGGGTCSSSEEE
T ss_pred HhcCcCCCEEECcCC-cccccCCCCccccccChHHhcCCCCcc
Confidence 788888888888885 444 56665557788888888776543
No 46
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.83 E-value=8e-19 Score=165.10 Aligned_cols=252 Identities=29% Similarity=0.315 Sum_probs=129.5
Q ss_pred ccccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCCCCCCcccceecc---------cCCC
Q 043298 19 PSSLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKYELPATLESLEVG---------NLPS 89 (357)
Q Consensus 19 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~---------~l~~ 89 (357)
+++|++|+++++. ++.+|.. .+ +|++|+++++ .++.+ |....+++|+.|+++ ..++
T Consensus 110 ~~~L~~L~l~~n~-l~~l~~~----------~~--~L~~L~L~~n-~l~~l-p~~~~l~~L~~L~l~~N~l~~lp~~~~~ 174 (454)
T 1jl5_A 110 PQSLKSLLVDNNN-LKALSDL----------PP--LLEYLGVSNN-QLEKL-PELQNSSFLKIIDVDNNSLKKLPDLPPS 174 (454)
T ss_dssp CTTCCEEECCSSC-CSCCCSC----------CT--TCCEEECCSS-CCSSC-CCCTTCTTCCEEECCSSCCSCCCCCCTT
T ss_pred cCCCcEEECCCCc-cCcccCC----------CC--CCCEEECcCC-CCCCC-cccCCCCCCCEEECCCCcCcccCCCccc
Confidence 4666667666654 5544432 13 5666666663 45555 544555666666665 2223
Q ss_pred cceEEEecCCCCchhchhccCCCCcccEEEcccccCccccCccccCccccceeecccCCCccccCCCCcCcccccEEEee
Q 043298 90 SVKVLDVYGCPKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSFPEGGLPCAKLRRLGIY 169 (357)
Q Consensus 90 ~L~~L~l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~ 169 (357)
|++|++++ +.++.+|. .+.+.+|++|++++ +.++.+|.. .++|+.|++++| .+..+|. +..+++|+.|+++
T Consensus 175 -L~~L~L~~-n~l~~l~~-~~~l~~L~~L~l~~-N~l~~l~~~---~~~L~~L~l~~n-~l~~lp~-~~~l~~L~~L~l~ 245 (454)
T 1jl5_A 175 -LEFIAAGN-NQLEELPE-LQNLPFLTAIYADN-NSLKKLPDL---PLSLESIVAGNN-ILEELPE-LQNLPFLTTIYAD 245 (454)
T ss_dssp -CCEEECCS-SCCSSCCC-CTTCTTCCEEECCS-SCCSSCCCC---CTTCCEEECCSS-CCSSCCC-CTTCTTCCEEECC
T ss_pred -ccEEECcC-CcCCcCcc-ccCCCCCCEEECCC-CcCCcCCCC---cCcccEEECcCC-cCCcccc-cCCCCCCCEEECC
Confidence 66666666 35555553 33444466666655 344444432 235555555553 3334442 4455555555555
Q ss_pred cCCCcccccccccCCCCCceEEecC-ccCCccCC------------------CCCCccceEEecCCcchhhhhhhccccc
Q 043298 170 DCERLEALPKGLHNLSSLQELTIGG-ELPSLEED------------------GLPTNLHSLDIWGNMEIWKSMIERGRGF 230 (357)
Q Consensus 170 ~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~------------------~~~~~L~~L~l~~~~~l~~~~~~~~~~l 230 (357)
+|. +..+|.. +++|++|++++ .++.+|.. ..+++|+.|++++| .++.++
T Consensus 246 ~N~-l~~l~~~---~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N-~l~~i~------- 313 (454)
T 1jl5_A 246 NNL-LKTLPDL---PPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSN-EIRSLC------- 313 (454)
T ss_dssp SSC-CSSCCSC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSS-CCSEEC-------
T ss_pred CCc-CCccccc---ccccCEEECCCCcccccCcccCcCCEEECcCCccCcccCcCCcCCEEECcCC-cCCccc-------
Confidence 532 2233321 24455555544 33333321 11244555555542 222211
Q ss_pred CCC-CCcceEEeecCCCCCCcCccccccccCCCCCCCCccEEEcCccccCcccccccccccccCeeccccCCCCcccC--
Q 043298 231 HRF-SSLGHLKIGGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLEHLSSSIVDLQNLTSLGLYNCPKLKYFP-- 307 (357)
Q Consensus 231 ~~~-~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~-- 307 (357)
.+ ++|+.|++++ +.+..++. .+++|++|++++ +.++.+|. .+++|++|++.++ .++.++
T Consensus 314 -~~~~~L~~L~Ls~--N~l~~lp~----------~~~~L~~L~L~~-N~l~~lp~---~l~~L~~L~L~~N-~l~~l~~i 375 (454)
T 1jl5_A 314 -DLPPSLEELNVSN--NKLIELPA----------LPPRLERLIASF-NHLAEVPE---LPQNLKQLHVEYN-PLREFPDI 375 (454)
T ss_dssp -CCCTTCCEEECCS--SCCSCCCC----------CCTTCCEEECCS-SCCSCCCC---CCTTCCEEECCSS-CCSSCCCC
T ss_pred -CCcCcCCEEECCC--Cccccccc----------cCCcCCEEECCC-Cccccccc---hhhhccEEECCCC-CCCcCCCC
Confidence 22 4788888887 45555554 358999999999 47888885 5789999999985 565533
Q ss_pred -CC-CCc-------------cCCceEEecCCh
Q 043298 308 -EK-GLP-------------SSLLLLWIEGCP 324 (357)
Q Consensus 308 -~~-~~~-------------~~L~~L~i~~c~ 324 (357)
.. +.+ ++|+.|++++++
T Consensus 376 p~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 376 PESVEDLRMNSHLAEVPELPQNLKQLHVETNP 407 (454)
T ss_dssp CTTCCEEECCC---------------------
T ss_pred hHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence 31 112 678888888754
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=7.9e-20 Score=163.81 Aligned_cols=247 Identities=15% Similarity=0.115 Sum_probs=189.8
Q ss_pred cccceeecccccccc---cccccccccccCCCCCCcCCccEEEEecCCCccccccCCCCCCcccceecccCCCcceEEEe
Q 043298 20 SSLKNLQIRDCYNIR---TLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKYELPATLESLEVGNLPSSVKVLDV 96 (357)
Q Consensus 20 ~~L~~L~l~~~~~l~---~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~l~~~L~~L~l 96 (357)
.+++.|+++++. +. .+|.. +..++ +|++|++++++.+....|.. +..+++ |++|++
T Consensus 50 ~~l~~L~L~~~~-l~~~~~~~~~-------l~~l~--~L~~L~L~~~n~l~~~~p~~----------l~~l~~-L~~L~L 108 (313)
T 1ogq_A 50 YRVNNLDLSGLN-LPKPYPIPSS-------LANLP--YLNFLYIGGINNLVGPIPPA----------IAKLTQ-LHYLYI 108 (313)
T ss_dssp CCEEEEEEECCC-CSSCEECCGG-------GGGCT--TCSEEEEEEETTEESCCCGG----------GGGCTT-CSEEEE
T ss_pred ceEEEEECCCCC-ccCCcccChh-------HhCCC--CCCeeeCCCCCcccccCChh----------HhcCCC-CCEEEC
Confidence 689999999987 55 56764 46777 99999999656666442422 224556 999999
Q ss_pred cCCCCch-hchhccCCCCcccEEEcccccCcc-ccCccccCccccceeecccCCCccccCCCCcCcc-cccEEEeecCCC
Q 043298 97 YGCPKLE-SIAERLDNNTSLETISIYNCENLK-ILPSGLHKLHQLREIWIRECGNLVSFPEGGLPCA-KLRRLGIYDCER 173 (357)
Q Consensus 97 ~~c~~~~-~~~~~~~~~~~L~~L~l~~c~~l~-~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~-~L~~L~l~~~~~ 173 (357)
+++ .++ .+|..++.+.+|++|++++ +.+. .+|..+..+++|++|++++|.....+|..+..++ +|+.|++++|..
T Consensus 109 s~n-~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l 186 (313)
T 1ogq_A 109 THT-NVSGAIPDFLSQIKTLVTLDFSY-NALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186 (313)
T ss_dssp EEE-CCEEECCGGGGGCTTCCEEECCS-SEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred cCC-eeCCcCCHHHhCCCCCCEEeCCC-CccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee
Confidence 994 555 6777666677899999999 5666 6888899999999999999765558888888887 999999999877
Q ss_pred cccccccccCCCCCceEEecC-ccCCc-cC-CCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeecCCCCCC-
Q 043298 174 LEALPKGLHNLSSLQELTIGG-ELPSL-EE-DGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDMV- 249 (357)
Q Consensus 174 ~~~~~~~~~~l~~L~~L~l~~-~~~~~-~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~- 249 (357)
...+|..+..++ |++|++++ .++.. +. ...+++|+.|++++|. +...++ .+..+++|++|++++ + .+.
T Consensus 187 ~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~----~~~~l~~L~~L~Ls~-N-~l~~ 258 (313)
T 1ogq_A 187 TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS-LAFDLG----KVGLSKNLNGLDLRN-N-RIYG 258 (313)
T ss_dssp EEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE-ECCBGG----GCCCCTTCCEEECCS-S-CCEE
T ss_pred eccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCc-eeeecC----cccccCCCCEEECcC-C-cccC
Confidence 778888888887 99999999 55532 22 5667999999999954 443332 357889999999999 4 454
Q ss_pred cCccccccccCCCCCCCCccEEEcCccccCcccccccccccccCeeccccCCCCcc
Q 043298 250 SFPLEDKRLGTALPLPASLTSLWIEDFPNLEHLSSSIVDLQNLTSLGLYNCPKLKY 305 (357)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~ 305 (357)
.+|... ..+++|++|+++++.--..+|.. ..+++|+.+++.+++.+..
T Consensus 259 ~~p~~l-------~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 259 TLPQGL-------TQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp CCCGGG-------GGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred cCChHH-------hcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 566555 47789999999996433467754 7889999999998765544
No 48
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.82 E-value=1.4e-18 Score=169.99 Aligned_cols=108 Identities=19% Similarity=0.145 Sum_probs=81.4
Q ss_pred CCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeecCCCCCCcCccccccccCCCCCCCCccEEEcCccccCccc
Q 043298 203 GLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLEHL 282 (357)
Q Consensus 203 ~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i 282 (357)
..++.++.|++++|.......+. .+..+++|+.|++++ +.+..++... +..+++|++|++++ +.+..+
T Consensus 466 ~~~~~L~~L~Ls~N~~~~~~~~~---~~~~l~~L~~L~Ls~--N~L~~l~~~~------f~~l~~L~~L~Ls~-N~l~~l 533 (635)
T 4g8a_A 466 NGLSSLEVLKMAGNSFQENFLPD---IFTELRNLTFLDLSQ--CQLEQLSPTA------FNSLSSLQVLNMSH-NNFFSL 533 (635)
T ss_dssp TTCTTCCEEECTTCEEGGGEECS---CCTTCTTCCEEECTT--SCCCEECTTT------TTTCTTCCEEECTT-SCCCBC
T ss_pred ccchhhhhhhhhhcccccccCch---hhhhccccCEEECCC--CccCCcChHH------HcCCCCCCEEECCC-CcCCCC
Confidence 34578888888887666655543 678889999999999 4666664432 35788999999999 567776
Q ss_pred c-cccccccccCeeccccCCCCcccCCCCC---ccCCceEEecCC
Q 043298 283 S-SSIVDLQNLTSLGLYNCPKLKYFPEKGL---PSSLLLLWIEGC 323 (357)
Q Consensus 283 ~-~~~~~~~~L~~L~l~~c~~l~~l~~~~~---~~~L~~L~i~~c 323 (357)
+ ..+.++++|++|++++ ++++.+++..+ +++|+.|+++++
T Consensus 534 ~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 534 DTFPYKCLNSLQVLDYSL-NHIMTSKKQELQHFPSSLAFLNLTQN 577 (635)
T ss_dssp CCGGGTTCTTCCEEECTT-SCCCBCCSSCTTCCCTTCCEEECTTC
T ss_pred ChhHHhCCCCCCEEECCC-CcCCCCCHHHHHhhhCcCCEEEeeCC
Confidence 5 4578899999999998 57888766433 468999999763
No 49
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.81 E-value=5.3e-19 Score=157.82 Aligned_cols=208 Identities=20% Similarity=0.153 Sum_probs=104.0
Q ss_pred cccccccccccccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCCCCCCcccceecccCCC
Q 043298 10 LTYIAAVQLPSSLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKYELPATLESLEVGNLPS 89 (357)
Q Consensus 10 l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~l~~ 89 (357)
++.+|. .++++|++|+++++. ++.+|.. ++..++ +|++|+++++ .++.+ ... ...+..+++
T Consensus 19 l~~ip~-~~~~~l~~L~L~~n~-l~~i~~~------~~~~l~--~L~~L~L~~n-~l~~~-~~~-------~~~~~~~~~ 79 (306)
T 2z66_A 19 LTSVPT-GIPSSATRLELESNK-LQSLPHG------VFDKLT--QLTKLSLSSN-GLSFK-GCC-------SQSDFGTTS 79 (306)
T ss_dssp CSSCCS-CCCTTCCEEECCSSC-CCCCCTT------TTTTCT--TCSEEECCSS-CCCEE-EEE-------EHHHHSCSC
T ss_pred cccCCC-CCCCCCCEEECCCCc-cCccCHh------Hhhccc--cCCEEECCCC-ccCcc-cCc-------ccccccccc
Confidence 444443 334566666666655 5556654 455555 6666666653 33322 100 000112344
Q ss_pred cceEEEecCCCCchhchhccCCCCcccEEEcccccCccccCc--cccCccccceeecccCCCccccCCCCcCcccccEEE
Q 043298 90 SVKVLDVYGCPKLESIAERLDNNTSLETISIYNCENLKILPS--GLHKLHQLREIWIRECGNLVSFPEGGLPCAKLRRLG 167 (357)
Q Consensus 90 ~L~~L~l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~ 167 (357)
|++|++++ +.++.++.....+.+|++|++++ +.++.++. .+..+++|+.|++++|......+..+..+++|++|+
T Consensus 80 -L~~L~Ls~-n~i~~l~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 156 (306)
T 2z66_A 80 -LKYLDLSF-NGVITMSSNFLGLEQLEHLDFQH-SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 156 (306)
T ss_dssp -CCEEECCS-CSEEEEEEEEETCTTCCEEECTT-SEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEE
T ss_pred -cCEEECCC-CccccChhhcCCCCCCCEEECCC-CcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEE
Confidence 66666666 34555554443444566666666 44554432 455566666666666443333334445556666666
Q ss_pred eecCCCcc-cccccccCCCCCceEEecC-ccCCccC--CCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeec
Q 043298 168 IYDCERLE-ALPKGLHNLSSLQELTIGG-ELPSLEE--DGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGG 243 (357)
Q Consensus 168 l~~~~~~~-~~~~~~~~l~~L~~L~l~~-~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~ 243 (357)
+++|.... ..|..+..+++|++|++++ .++.++. ...+++|++|++++| .++..++. .+..+++|+.|++++
T Consensus 157 l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~---~~~~l~~L~~L~L~~ 232 (306)
T 2z66_A 157 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTF---PYKCLNSLQVLDYSL 232 (306)
T ss_dssp CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCSBCCSG---GGTTCTTCCEEECTT
T ss_pred CCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCC-ccCccChh---hccCcccCCEeECCC
Confidence 66544333 3455555666666666655 4444321 233455555555553 23333321 344555555555555
No 50
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.81 E-value=2.6e-18 Score=166.92 Aligned_cols=194 Identities=29% Similarity=0.395 Sum_probs=125.0
Q ss_pred CCCcceEEEecCCCCchhchhccCCCCcccEEEcccccCccccCccccCccccceeecccCCCccccCCCCcCcccccEE
Q 043298 87 LPSSVKVLDVYGCPKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSFPEGGLPCAKLRRL 166 (357)
Q Consensus 87 l~~~L~~L~l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L 166 (357)
+++ |++|++++ +.++.+|. .+.+|+.|++++ +.++.+|.. +++|+.|++++| .+..+|.. +++|+.|
T Consensus 100 l~~-L~~L~Ls~-N~l~~l~~---~l~~L~~L~L~~-N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~~---~~~L~~L 166 (622)
T 3g06_A 100 PPG-LLELSIFS-NPLTHLPA---LPSGLCKLWIFG-NQLTSLPVL---PPGLQELSVSDN-QLASLPAL---PSELCKL 166 (622)
T ss_dssp CTT-CCEEEECS-CCCCCCCC---CCTTCCEEECCS-SCCSCCCCC---CTTCCEEECCSS-CCSCCCCC---CTTCCEE
T ss_pred CCC-CCEEECcC-CcCCCCCC---CCCCcCEEECCC-CCCCcCCCC---CCCCCEEECcCC-cCCCcCCc---cCCCCEE
Confidence 345 77778877 46666665 345577888877 566666653 477778888774 45555542 3467777
Q ss_pred EeecCCCcccccccccCCCCCceEEecC-ccCCccCCCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeecCC
Q 043298 167 GIYDCERLEALPKGLHNLSSLQELTIGG-ELPSLEEDGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCD 245 (357)
Q Consensus 167 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c 245 (357)
++++| .+..+| ..+++|+.|++++ .++.++. .+++|+.|++++| .++.++ ..+++|+.|++++
T Consensus 167 ~L~~N-~l~~l~---~~~~~L~~L~Ls~N~l~~l~~--~~~~L~~L~L~~N-~l~~l~-------~~~~~L~~L~Ls~-- 230 (622)
T 3g06_A 167 WAYNN-QLTSLP---MLPSGLQELSVSDNQLASLPT--LPSELYKLWAYNN-RLTSLP-------ALPSGLKELIVSG-- 230 (622)
T ss_dssp ECCSS-CCSCCC---CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSS-CCSSCC-------CCCTTCCEEECCS--
T ss_pred ECCCC-CCCCCc---ccCCCCcEEECCCCCCCCCCC--ccchhhEEECcCC-cccccC-------CCCCCCCEEEccC--
Confidence 77764 344455 3457777787777 6666653 3467777777773 444444 2246777777777
Q ss_pred CCCCcCccccccccCCCCCCCCccEEEcCccccCcccccccccccccCeeccccCCCCcccCCC-CCccCCceEEecCCh
Q 043298 246 DDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLEHLSSSIVDLQNLTSLGLYNCPKLKYFPEK-GLPSSLLLLWIEGCP 324 (357)
Q Consensus 246 ~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~ 324 (357)
+.+..++. .+++|+.|++++ +.++.+|. .+++|+.|++.+| .++.+|.. ..+++|+.|++++++
T Consensus 231 N~L~~lp~----------~l~~L~~L~Ls~-N~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 231 NRLTSLPV----------LPSELKELMVSG-NRLTSLPM---LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp SCCSCCCC----------CCTTCCEEECCS-SCCSCCCC---CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred CccCcCCC----------CCCcCcEEECCC-CCCCcCCc---ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCC
Confidence 45666552 446777777777 46667764 5677777777774 56666552 225677777777765
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.81 E-value=3.1e-18 Score=160.76 Aligned_cols=239 Identities=19% Similarity=0.267 Sum_probs=146.8
Q ss_pred cceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCCCCCCcccceecccCCCcceEEEecCCCC
Q 043298 22 LKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKYELPATLESLEVGNLPSSVKVLDVYGCPK 101 (357)
Q Consensus 22 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~l~~~L~~L~l~~c~~ 101 (357)
.+.++.++.. ++.+|.. +. . +++.|++++ +.++.+ +.. .+. .+++ |++|++++ +.
T Consensus 45 ~~~v~c~~~~-l~~iP~~------~~---~--~l~~L~L~~-n~i~~~-~~~-~~~--------~l~~-L~~L~Ls~-n~ 99 (440)
T 3zyj_A 45 FSKVICVRKN-LREVPDG------IS---T--NTRLLNLHE-NQIQII-KVN-SFK--------HLRH-LEILQLSR-NH 99 (440)
T ss_dssp SCEEECCSCC-CSSCCSC------CC---T--TCSEEECCS-CCCCEE-CTT-TTS--------SCSS-CCEEECCS-SC
T ss_pred CCEEEeCCCC-cCcCCCC------CC---C--CCcEEEccC-CcCCee-CHH-Hhh--------CCCC-CCEEECCC-Cc
Confidence 3455555433 6666654 21 3 567777776 345555 322 112 3334 77777777 45
Q ss_pred chhchhc-cCCCCcccEEEcccccCccccCc-cccCccccceeecccCCCccccCC-CCcCcccccEEEeecCCCccccc
Q 043298 102 LESIAER-LDNNTSLETISIYNCENLKILPS-GLHKLHQLREIWIRECGNLVSFPE-GGLPCAKLRRLGIYDCERLEALP 178 (357)
Q Consensus 102 ~~~~~~~-~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~~ 178 (357)
++.++.. +..+.+|++|++++ +.++.++. .+..+++|+.|++++| .+..++. .+..+++|+.|++++|+.+..++
T Consensus 100 i~~i~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~ 177 (440)
T 3zyj_A 100 IRTIEIGAFNGLANLNTLELFD-NRLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYIS 177 (440)
T ss_dssp CCEECGGGGTTCSSCCEEECCS-SCCSSCCTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred CCccChhhccCCccCCEEECCC-CcCCeeCHhHhhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeC
Confidence 5555432 33455577777777 56666654 4667777777777774 3455543 45667777777777766666665
Q ss_pred c-cccCCCCCceEEecC-ccCCccCCCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeecCCCCCCcCccccc
Q 043298 179 K-GLHNLSSLQELTIGG-ELPSLEEDGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDMVSFPLEDK 256 (357)
Q Consensus 179 ~-~~~~l~~L~~L~l~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~~~~~~~ 256 (357)
. .+..+++|++|++++ .++.++....+++|++|++++| .++.+.+. .+..+++|+.|++++ +.+..++...
T Consensus 178 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~---~~~~l~~L~~L~L~~--n~l~~~~~~~- 250 (440)
T 3zyj_A 178 EGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGN-HLSAIRPG---SFQGLMHLQKLWMIQ--SQIQVIERNA- 250 (440)
T ss_dssp TTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTS-CCCEECTT---TTTTCTTCCEEECTT--CCCCEECTTS-
T ss_pred cchhhcccccCeecCCCCcCccccccCCCcccCEEECCCC-ccCccChh---hhccCccCCEEECCC--CceeEEChhh-
Confidence 4 567777777777777 6677776666777777777774 45544432 566777777777777 4455444322
Q ss_pred cccCCCCCCCCccEEEcCccccCccccc-ccccccccCeeccccC
Q 043298 257 RLGTALPLPASLTSLWIEDFPNLEHLSS-SIVDLQNLTSLGLYNC 300 (357)
Q Consensus 257 ~~~~~~~~~~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~c 300 (357)
+..+++|+.|++++ +.+..++. .+..+++|+.|++.++
T Consensus 251 -----~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 251 -----FDNLQSLVEINLAH-NNLTLLPHDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp -----STTCTTCCEEECTT-SCCCCCCTTTTSSCTTCCEEECCSS
T ss_pred -----hcCCCCCCEEECCC-CCCCccChhHhccccCCCEEEcCCC
Confidence 34567777777777 45665553 3456677777777663
No 52
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.80 E-value=4.8e-18 Score=165.01 Aligned_cols=234 Identities=28% Similarity=0.375 Sum_probs=135.4
Q ss_pred ccccccccccccccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCCCCCCcccceecc---
Q 043298 9 SLTYIAAVQLPSSLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKYELPATLESLEVG--- 85 (357)
Q Consensus 9 ~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~--- 85 (357)
+++.+|. .++++|+.|++++|. ++.+|.. ++ +|++|+++++ .++.+ |. .+++|+.|+++
T Consensus 51 ~L~~lp~-~l~~~L~~L~L~~N~-l~~lp~~----------l~--~L~~L~Ls~N-~l~~l-p~--~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 51 GLTTLPD-CLPAHITTLVIPDNN-LTSLPAL----------PP--ELRTLEVSGN-QLTSL-PV--LPPGLLELSIFSNP 112 (622)
T ss_dssp CCSCCCS-CCCTTCSEEEECSCC-CSCCCCC----------CT--TCCEEEECSC-CCSCC-CC--CCTTCCEEEECSCC
T ss_pred CcCccCh-hhCCCCcEEEecCCC-CCCCCCc----------CC--CCCEEEcCCC-cCCcC-CC--CCCCCCEEECcCCc
Confidence 4455544 223667777776665 5555532 23 6777777763 45655 54 55666666665
Q ss_pred ------cCCCcceEEEecCCCCchhchhccCCCCcccEEEcccccCccccCccccCccccceeecccCCCccccCCCCcC
Q 043298 86 ------NLPSSVKVLDVYGCPKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSFPEGGLP 159 (357)
Q Consensus 86 ------~l~~~L~~L~l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 159 (357)
.+++ |++|++++ +.++.+|.. +.+|++|++++ +.++.+|. .+++|+.|++++ +.+..+| ..
T Consensus 113 l~~l~~~l~~-L~~L~L~~-N~l~~lp~~---l~~L~~L~Ls~-N~l~~l~~---~~~~L~~L~L~~-N~l~~l~---~~ 179 (622)
T 3g06_A 113 LTHLPALPSG-LCKLWIFG-NQLTSLPVL---PPGLQELSVSD-NQLASLPA---LPSELCKLWAYN-NQLTSLP---ML 179 (622)
T ss_dssp CCCCCCCCTT-CCEEECCS-SCCSCCCCC---CTTCCEEECCS-SCCSCCCC---CCTTCCEEECCS-SCCSCCC---CC
T ss_pred CCCCCCCCCC-cCEEECCC-CCCCcCCCC---CCCCCEEECcC-CcCCCcCC---ccCCCCEEECCC-CCCCCCc---cc
Confidence 2334 67777776 456666552 24577777766 45555553 245666666666 3455555 23
Q ss_pred cccccEEEeecCCCcccccccccCCCCCceEEecC-ccCCccCCCCCCccceEEecCCcchhhhhhhcccccCCCCCcce
Q 043298 160 CAKLRRLGIYDCERLEALPKGLHNLSSLQELTIGG-ELPSLEEDGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGH 238 (357)
Q Consensus 160 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~ 238 (357)
+++|+.|++++|. +..+|.. +++|+.|++.+ .++.++. .+++|+.|++++| .++.++ ..+++|+.
T Consensus 180 ~~~L~~L~Ls~N~-l~~l~~~---~~~L~~L~L~~N~l~~l~~--~~~~L~~L~Ls~N-~L~~lp-------~~l~~L~~ 245 (622)
T 3g06_A 180 PSGLQELSVSDNQ-LASLPTL---PSELYKLWAYNNRLTSLPA--LPSGLKELIVSGN-RLTSLP-------VLPSELKE 245 (622)
T ss_dssp CTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCCSSCCC--CCTTCCEEECCSS-CCSCCC-------CCCTTCCE
T ss_pred CCCCcEEECCCCC-CCCCCCc---cchhhEEECcCCcccccCC--CCCCCCEEEccCC-ccCcCC-------CCCCcCcE
Confidence 4567777776643 3444432 35666677666 5555553 2366777777663 444433 33466777
Q ss_pred EEeecCCCCCCcCccccccccCCCCCCCCccEEEcCccccCcccccccccccccCeeccccC
Q 043298 239 LKIGGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLEHLSSSIVDLQNLTSLGLYNC 300 (357)
Q Consensus 239 L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c 300 (357)
|++++ +.+..++. .+++|+.|++++ +.+..+|..+..+++|+.|++.++
T Consensus 246 L~Ls~--N~L~~lp~----------~~~~L~~L~Ls~-N~L~~lp~~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 246 LMVSG--NRLTSLPM----------LPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGN 294 (622)
T ss_dssp EECCS--SCCSCCCC----------CCTTCCEEECCS-SCCCSCCGGGGGSCTTCEEECCSC
T ss_pred EECCC--CCCCcCCc----------ccccCcEEeCCC-CCCCcCCHHHhhccccCEEEecCC
Confidence 77776 35555554 335677777776 356666666666677777777664
No 53
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.80 E-value=9.7e-19 Score=150.47 Aligned_cols=210 Identities=16% Similarity=0.187 Sum_probs=155.4
Q ss_pred CCCchhchhccCCCCcccEEEcccccCccccCc-cccCccccceeecccCCCccccCC-CCcCcccccEEEeecCCCccc
Q 043298 99 CPKLESIAERLDNNTSLETISIYNCENLKILPS-GLHKLHQLREIWIRECGNLVSFPE-GGLPCAKLRRLGIYDCERLEA 176 (357)
Q Consensus 99 c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~ 176 (357)
|..++.+|. . +.++++|++++ +.++.++. .+.++++|+.|++++|..++.++. .+..+++|++|++++|+.++.
T Consensus 20 c~~l~~ip~-~--~~~l~~L~l~~-n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~ 95 (239)
T 2xwt_C 20 CKDIQRIPS-L--PPSTQTLKLIE-THLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY 95 (239)
T ss_dssp ECSCSSCCC-C--CTTCCEEEEES-CCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE
T ss_pred ccCccccCC-C--CCcccEEEEeC-CcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE
Confidence 344666666 3 44678888877 56776654 567788888888887654666664 466778888888887555555
Q ss_pred cc-ccccCCCCCceEEecC-ccCCccCCCCCCccc---eEEecCCcchhhhhhhcccccCCCCCcc-eEEeecCCCCCCc
Q 043298 177 LP-KGLHNLSSLQELTIGG-ELPSLEEDGLPTNLH---SLDIWGNMEIWKSMIERGRGFHRFSSLG-HLKIGGCDDDMVS 250 (357)
Q Consensus 177 ~~-~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~L~---~L~l~~~~~l~~~~~~~~~~l~~~~~L~-~L~l~~~c~~l~~ 250 (357)
++ ..+..+++|++|++.+ .++.+|....+++|+ .|++++|..++.+++. .+..+++|+ +|++++ +.+..
T Consensus 96 i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~---~~~~l~~L~~~L~l~~--n~l~~ 170 (239)
T 2xwt_C 96 IDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVN---AFQGLCNETLTLKLYN--NGFTS 170 (239)
T ss_dssp ECTTSEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTT---TTTTTBSSEEEEECCS--CCCCE
T ss_pred cCHHHhCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcc---cccchhcceeEEEcCC--CCCcc
Confidence 55 4677888888888888 777777666667777 9999997577777653 578899999 999998 56777
Q ss_pred CccccccccCCCCCCCCccEEEcCccccCcccc-cccccc-cccCeeccccCCCCcccCCCCCccCCceEEecCChhh
Q 043298 251 FPLEDKRLGTALPLPASLTSLWIEDFPNLEHLS-SSIVDL-QNLTSLGLYNCPKLKYFPEKGLPSSLLLLWIEGCPLI 326 (357)
Q Consensus 251 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~-~~~~~~-~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~l 326 (357)
++... ...++|++|+++++..++.++ ..+..+ ++|++|++++ +.++.+|.. .+++|+.|++.++..|
T Consensus 171 i~~~~-------~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~~-~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 171 VQGYA-------FNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPSK-GLEHLKELIARNTWTL 239 (239)
T ss_dssp ECTTT-------TTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCCCCCT-TCTTCSEEECTTC---
T ss_pred cCHhh-------cCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-CccccCChh-HhccCceeeccCccCC
Confidence 77644 133789999999965688875 456788 9999999999 678888875 5689999999988654
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.80 E-value=1.6e-18 Score=154.63 Aligned_cols=239 Identities=18% Similarity=0.130 Sum_probs=155.4
Q ss_pred ceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCCCCCCcccceecccCCCcceEEEecCCCCc
Q 043298 23 KNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKYELPATLESLEVGNLPSSVKVLDVYGCPKL 102 (357)
Q Consensus 23 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~l~~~L~~L~l~~c~~~ 102 (357)
+.++.++.. ++.+|.. +. . +|++|+++++ .++.+ |.. .+. .+++ |++|++++ +.+
T Consensus 10 ~~l~c~~~~-l~~ip~~------~~---~--~l~~L~L~~n-~l~~i-~~~-~~~--------~l~~-L~~L~L~~-n~l 64 (306)
T 2z66_A 10 TEIRCNSKG-LTSVPTG------IP---S--SATRLELESN-KLQSL-PHG-VFD--------KLTQ-LTKLSLSS-NGL 64 (306)
T ss_dssp TEEECCSSC-CSSCCSC------CC---T--TCCEEECCSS-CCCCC-CTT-TTT--------TCTT-CSEEECCS-SCC
T ss_pred CEEEcCCCC-cccCCCC------CC---C--CCCEEECCCC-ccCcc-CHh-Hhh--------cccc-CCEEECCC-Ccc
Confidence 467776655 7888865 22 3 7889999984 57766 543 122 3444 88899988 455
Q ss_pred hhc---hhccCCCCcccEEEcccccCccccCccccCccccceeecccCCCccccCC--CCcCcccccEEEeecCCCcccc
Q 043298 103 ESI---AERLDNNTSLETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSFPE--GGLPCAKLRRLGIYDCERLEAL 177 (357)
Q Consensus 103 ~~~---~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~l~~L~~L~l~~~~~~~~~ 177 (357)
+.+ +.....+.+|++|++++ +.+..++..+..+++|++|+++++ .+..++. .+..+++|+.|++++|......
T Consensus 65 ~~~~~~~~~~~~~~~L~~L~Ls~-n~i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 142 (306)
T 2z66_A 65 SFKGCCSQSDFGTTSLKYLDLSF-NGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 142 (306)
T ss_dssp CEEEEEEHHHHSCSCCCEEECCS-CSEEEEEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECS
T ss_pred CcccCcccccccccccCEEECCC-CccccChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccc
Confidence 543 23332456699999998 677888888888999999999884 5555553 5677889999999887766566
Q ss_pred cccccCCCCCceEEecC-ccCC--ccC-CCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeecCCCCCCcCcc
Q 043298 178 PKGLHNLSSLQELTIGG-ELPS--LEE-DGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDMVSFPL 253 (357)
Q Consensus 178 ~~~~~~l~~L~~L~l~~-~~~~--~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~~~~ 253 (357)
+..+..+++|++|++++ .+.. ++. ...+++|+.|++++| .++..++. .+..+++|++|++++ +.+..++.
T Consensus 143 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~---~~~~l~~L~~L~L~~--N~l~~~~~ 216 (306)
T 2z66_A 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPT---AFNSLSSLQVLNMSH--NNFFSLDT 216 (306)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTT---TTTTCTTCCEEECTT--SCCSBCCS
T ss_pred hhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC-CcCCcCHH---HhcCCCCCCEEECCC--CccCccCh
Confidence 66778888888888877 4443 332 445677777777774 34444332 456677777777777 34444443
Q ss_pred ccccccCCCCCCCCccEEEcCccccCccccccccccc-ccCeeccccC
Q 043298 254 EDKRLGTALPLPASLTSLWIEDFPNLEHLSSSIVDLQ-NLTSLGLYNC 300 (357)
Q Consensus 254 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~-~L~~L~l~~c 300 (357)
.. +..+++|+.|+++++.--...+..+..++ +|++|++.++
T Consensus 217 ~~------~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 217 FP------YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp GG------GTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTC
T ss_pred hh------ccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCC
Confidence 22 13556777777777432233344445553 6666666663
No 55
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.80 E-value=2.2e-20 Score=167.80 Aligned_cols=244 Identities=14% Similarity=0.112 Sum_probs=186.0
Q ss_pred ccccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCCCCCCcccceecccCCCcceEEEecC
Q 043298 19 PSSLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKYELPATLESLEVGNLPSSVKVLDVYG 98 (357)
Q Consensus 19 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~l~~~L~~L~l~~ 98 (357)
+++|++|++++|. ++.++.. .+..++ +|++|+++++ .++.. ++ +..+++ |++|++++
T Consensus 33 ~~~L~~L~L~~n~-l~~~~~~------~~~~l~--~L~~L~Ls~n-~l~~~-~~-----------~~~l~~-L~~L~Ls~ 89 (317)
T 3o53_A 33 AWNVKELDLSGNP-LSQISAA------DLAPFT--KLELLNLSSN-VLYET-LD-----------LESLST-LRTLDLNN 89 (317)
T ss_dssp GGGCSEEECTTSC-CCCCCHH------HHTTCT--TCCEEECTTS-CCEEE-EE-----------ETTCTT-CCEEECCS
T ss_pred CCCCCEEECcCCc-cCcCCHH------HhhCCC--cCCEEECCCC-cCCcc-hh-----------hhhcCC-CCEEECcC
Confidence 5789999999987 7777654 457777 9999999984 56655 32 234566 99999999
Q ss_pred CCCchhchhccCCCCcccEEEcccccCccccCccccCccccceeecccCCCcccc-CCCCcCcccccEEEeecCCCcccc
Q 043298 99 CPKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSF-PEGGLPCAKLRRLGIYDCERLEAL 177 (357)
Q Consensus 99 c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~ 177 (357)
+.++.++. ..+|++|++++ +.+..++.. .+++|+.|++++|. +..+ +..+..+++|+.|++++|......
T Consensus 90 -n~l~~l~~----~~~L~~L~l~~-n~l~~~~~~--~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 90 -NYVQELLV----GPSIETLHAAN-NNISRVSCS--RGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp -SEEEEEEE----CTTCCEEECCS-SCCSEEEEC--CCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred -CccccccC----CCCcCEEECCC-CccCCcCcc--ccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCCCCCccc
Confidence 57777764 25699999998 677766533 47889999999864 5555 446777899999999997655555
Q ss_pred cccc-cCCCCCceEEecC-ccCCccCCCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeecCCCCCCcCcccc
Q 043298 178 PKGL-HNLSSLQELTIGG-ELPSLEEDGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDMVSFPLED 255 (357)
Q Consensus 178 ~~~~-~~l~~L~~L~l~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~~~~~~ 255 (357)
+..+ ..+++|++|++++ .++.++....+++|++|++++| .++.+++ .+..+++|+.|++++ +.+..++...
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N-~l~~l~~----~~~~l~~L~~L~L~~--N~l~~l~~~~ 233 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSN-KLAFMGP----EFQSAAGVTWISLRN--NKLVLIEKAL 233 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSS-CCCEECG----GGGGGTTCSEEECTT--SCCCEECTTC
T ss_pred HHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCC-cCCcchh----hhcccCcccEEECcC--CcccchhhHh
Confidence 5555 4789999999999 8887777777899999999994 5666653 367889999999999 5777777655
Q ss_pred ccccCCCCCCCCccEEEcCccccC-cccccccccccccCeeccccCCCCcccCC
Q 043298 256 KRLGTALPLPASLTSLWIEDFPNL-EHLSSSIVDLQNLTSLGLYNCPKLKYFPE 308 (357)
Q Consensus 256 ~~~~~~~~~~~~L~~L~l~~c~~l-~~i~~~~~~~~~L~~L~l~~c~~l~~l~~ 308 (357)
..+++|+.|++++++-. ..++.++..+++|+.+++.+++.++....
T Consensus 234 -------~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 234 -------RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp -------CCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred -------hcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence 57789999999995443 36677778899999999887766655433
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.80 E-value=2.2e-18 Score=157.06 Aligned_cols=258 Identities=16% Similarity=0.153 Sum_probs=195.1
Q ss_pred ccccccccccccccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCCCCCCcccceecccCC
Q 043298 9 SLTYIAAVQLPSSLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKYELPATLESLEVGNLP 88 (357)
Q Consensus 9 ~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~l~ 88 (357)
+++.+|. .+.++|++|+++++. ++.++.. .+..++ +|++|+++++ .++.+ ++. .+. .++
T Consensus 42 ~l~~iP~-~~~~~L~~L~l~~n~-i~~~~~~------~~~~l~--~L~~L~L~~n-~l~~~-~~~-~~~--------~l~ 100 (353)
T 2z80_A 42 SLNSIPS-GLTEAVKSLDLSNNR-ITYISNS------DLQRCV--NLQALVLTSN-GINTI-EED-SFS--------SLG 100 (353)
T ss_dssp TCSSCCT-TCCTTCCEEECTTSC-CCEECTT------TTTTCT--TCCEEECTTS-CCCEE-CTT-TTT--------TCT
T ss_pred Ccccccc-cccccCcEEECCCCc-CcccCHH------HhccCC--CCCEEECCCC-ccCcc-CHh-hcC--------CCC
Confidence 4566664 456899999999987 8888876 567888 9999999994 67776 432 122 344
Q ss_pred CcceEEEecCCCCchhchhc-cCCCCcccEEEcccccCccccCc--cccCccccceeecccCCCccccC-CCCcCccccc
Q 043298 89 SSVKVLDVYGCPKLESIAER-LDNNTSLETISIYNCENLKILPS--GLHKLHQLREIWIRECGNLVSFP-EGGLPCAKLR 164 (357)
Q Consensus 89 ~~L~~L~l~~c~~~~~~~~~-~~~~~~L~~L~l~~c~~l~~l~~--~~~~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~ 164 (357)
+ |++|++++ +.++.++.. .+.+.+|++|++++ +.++.++. .+..+++|+.|++++|..+..++ ..+..+++|+
T Consensus 101 ~-L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 177 (353)
T 2z80_A 101 S-LEHLDLSY-NYLSNLSSSWFKPLSSLTFLNLLG-NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLE 177 (353)
T ss_dssp T-CCEEECCS-SCCSSCCHHHHTTCTTCSEEECTT-CCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE
T ss_pred C-CCEEECCC-CcCCcCCHhHhCCCccCCEEECCC-CCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCC
Confidence 5 99999999 678888765 45667799999999 68888876 67889999999999987777775 4678899999
Q ss_pred EEEeecCCCcccccccccCCCCCceEEecC-ccCCccC--CCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEe
Q 043298 165 RLGIYDCERLEALPKGLHNLSSLQELTIGG-ELPSLEE--DGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKI 241 (357)
Q Consensus 165 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l 241 (357)
+|++++|......|..++.+++|++|++++ .++.++. ...+++|+.|++++| .++..+..........+.++.+++
T Consensus 178 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~~~~~~l~~l~L 256 (353)
T 2z80_A 178 ELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT-DLDTFHFSELSTGETNSLIKKFTF 256 (353)
T ss_dssp EEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESC-BCTTCCCC------CCCCCCEEEE
T ss_pred EEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCC-ccccccccccccccccchhhcccc
Confidence 999999876666688999999999999998 7666654 223689999999995 444433210012234567888888
Q ss_pred ecCCCCCCc-----CccccccccCCCCCCCCccEEEcCccccCccccccc-ccccccCeeccccCC
Q 043298 242 GGCDDDMVS-----FPLEDKRLGTALPLPASLTSLWIEDFPNLEHLSSSI-VDLQNLTSLGLYNCP 301 (357)
Q Consensus 242 ~~~c~~l~~-----~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~-~~~~~L~~L~l~~c~ 301 (357)
++ + .+.. ++... ..+++|++|++++ +.++.+|..+ ..+++|++|++.+++
T Consensus 257 ~~-~-~l~~~~l~~l~~~l-------~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 257 RN-V-KITDESLFQVMKLL-------NQISGLLELEFSR-NQLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp ES-C-BCCHHHHHHHHHHH-------HTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cc-c-cccCcchhhhHHHH-------hcccCCCEEECCC-CCCCccCHHHHhcCCCCCEEEeeCCC
Confidence 88 3 3332 33333 4778999999999 5788898774 889999999999863
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.80 E-value=4.8e-18 Score=159.98 Aligned_cols=219 Identities=23% Similarity=0.322 Sum_probs=127.2
Q ss_pred CccEEEEecCCCccccccCCCCCCcccceecccCCCcceEEEecCCCCchhchh-ccCCCCcccEEEcccccCccccCcc
Q 043298 54 LLEELFVFNCDSLTCIFSKYELPATLESLEVGNLPSSVKVLDVYGCPKLESIAE-RLDNNTSLETISIYNCENLKILPSG 132 (357)
Q Consensus 54 ~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~l~~~L~~L~l~~c~~~~~~~~-~~~~~~~L~~L~l~~c~~l~~l~~~ 132 (357)
++++|++++ +.++.+ ++. .+. .+++ |++|++++ +.++.++. .+..+.+|++|++++ +.++.++..
T Consensus 76 ~l~~L~L~~-n~i~~~-~~~-~~~--------~l~~-L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~ 141 (452)
T 3zyi_A 76 NTRYLNLME-NNIQMI-QAD-TFR--------HLHH-LEVLQLGR-NSIRQIEVGAFNGLASLNTLELFD-NWLTVIPSG 141 (452)
T ss_dssp TCSEEECCS-SCCCEE-CTT-TTT--------TCTT-CCEEECCS-SCCCEECTTTTTTCTTCCEEECCS-SCCSBCCTT
T ss_pred CccEEECcC-CcCceE-CHH-HcC--------CCCC-CCEEECCC-CccCCcChhhccCcccCCEEECCC-CcCCccChh
Confidence 566666666 345554 322 111 2333 66677766 45555442 223345577777766 456655533
Q ss_pred -ccCccccceeecccCCCccccCC-CCcCcccccEEEeecCCCcccccc-cccCCCCCceEEecC-ccCCccCCCCCCcc
Q 043298 133 -LHKLHQLREIWIRECGNLVSFPE-GGLPCAKLRRLGIYDCERLEALPK-GLHNLSSLQELTIGG-ELPSLEEDGLPTNL 208 (357)
Q Consensus 133 -~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~-~~~~~~~~~~~~~L 208 (357)
+..+++|++|++++| .+..++. .+..+++|+.|++++|+.++.++. .+..+++|++|++++ .++.++....+++|
T Consensus 142 ~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L 220 (452)
T 3zyi_A 142 AFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGL 220 (452)
T ss_dssp TSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTC
T ss_pred hhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccc
Confidence 556677777777664 3445543 455666777777776666666654 466667777777766 66666666666677
Q ss_pred ceEEecCCcchhhhhhhcccccCCCCCcceEEeecCCCCCCcCccccccccCCCCCCCCccEEEcCccccCccccc-ccc
Q 043298 209 HSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLEHLSS-SIV 287 (357)
Q Consensus 209 ~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~-~~~ 287 (357)
++|++++| .++.+.+. .+..+++|+.|++++ +.+..++... +..+++|+.|++++ +.+..++. .+.
T Consensus 221 ~~L~Ls~N-~l~~~~~~---~~~~l~~L~~L~L~~--n~l~~~~~~~------~~~l~~L~~L~L~~-N~l~~~~~~~~~ 287 (452)
T 3zyi_A 221 EELEMSGN-HFPEIRPG---SFHGLSSLKKLWVMN--SQVSLIERNA------FDGLASLVELNLAH-NNLSSLPHDLFT 287 (452)
T ss_dssp CEEECTTS-CCSEECGG---GGTTCTTCCEEECTT--SCCCEECTTT------TTTCTTCCEEECCS-SCCSCCCTTSST
T ss_pred cEEECcCC-cCcccCcc---cccCccCCCEEEeCC--CcCceECHHH------hcCCCCCCEEECCC-CcCCccChHHhc
Confidence 77777763 34444332 456667777777776 3444443221 24556777777776 35555543 345
Q ss_pred cccccCeeccccC
Q 043298 288 DLQNLTSLGLYNC 300 (357)
Q Consensus 288 ~~~~L~~L~l~~c 300 (357)
.+++|+.|++.++
T Consensus 288 ~l~~L~~L~L~~N 300 (452)
T 3zyi_A 288 PLRYLVELHLHHN 300 (452)
T ss_dssp TCTTCCEEECCSS
T ss_pred cccCCCEEEccCC
Confidence 5666777766653
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.77 E-value=7e-18 Score=158.30 Aligned_cols=237 Identities=15% Similarity=0.257 Sum_probs=178.5
Q ss_pred CccEEEEecCCCccccccCCCCCCcccceecccCCCcceEEEecCCCCchhchh-ccCCCCcccEEEcccccCccccC-c
Q 043298 54 LLEELFVFNCDSLTCIFSKYELPATLESLEVGNLPSSVKVLDVYGCPKLESIAE-RLDNNTSLETISIYNCENLKILP-S 131 (357)
Q Consensus 54 ~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~l~~~L~~L~l~~c~~~~~~~~-~~~~~~~L~~L~l~~c~~l~~l~-~ 131 (357)
..+.++..+ ..++.+ |.. .+ +. +++|++++ +.++.++. .+..+.+|++|++++ +.++.++ .
T Consensus 44 ~~~~v~c~~-~~l~~i-P~~-~~-----------~~-l~~L~L~~-n~i~~~~~~~~~~l~~L~~L~Ls~-n~i~~i~~~ 106 (440)
T 3zyj_A 44 QFSKVICVR-KNLREV-PDG-IS-----------TN-TRLLNLHE-NQIQIIKVNSFKHLRHLEILQLSR-NHIRTIEIG 106 (440)
T ss_dssp TSCEEECCS-CCCSSC-CSC-CC-----------TT-CSEEECCS-CCCCEECTTTTSSCSSCCEEECCS-SCCCEECGG
T ss_pred CCCEEEeCC-CCcCcC-CCC-CC-----------CC-CcEEEccC-CcCCeeCHHHhhCCCCCCEEECCC-CcCCccChh
Confidence 356666665 557766 643 11 23 88999998 56777653 334567799999999 6677765 5
Q ss_pred cccCccccceeecccCCCccccCC-CCcCcccccEEEeecCCCcccccccccCCCCCceEEecC--ccCCccC--CCCCC
Q 043298 132 GLHKLHQLREIWIRECGNLVSFPE-GGLPCAKLRRLGIYDCERLEALPKGLHNLSSLQELTIGG--ELPSLEE--DGLPT 206 (357)
Q Consensus 132 ~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~--~~~~~~~--~~~~~ 206 (357)
.+.++++|+.|++++| .++.++. .+..+++|++|++++|......+..+..+++|++|++.+ .+..++. ...++
T Consensus 107 ~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~ 185 (440)
T 3zyj_A 107 AFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS 185 (440)
T ss_dssp GGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCS
T ss_pred hccCCccCCEEECCCC-cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccc
Confidence 6788999999999995 6677765 577889999999999664443344788999999999987 5555554 45578
Q ss_pred ccceEEecCCcchhhhhhhcccccCCCCCcceEEeecCCCCCCcCccccccccCCCCCCCCccEEEcCccccCccc-ccc
Q 043298 207 NLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLEHL-SSS 285 (357)
Q Consensus 207 ~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i-~~~ 285 (357)
+|+.|++++| .++.++ .+..+++|++|++++ +.+..++... +..+++|++|+++++ .+..+ +..
T Consensus 186 ~L~~L~L~~n-~l~~~~-----~~~~l~~L~~L~Ls~--N~l~~~~~~~------~~~l~~L~~L~L~~n-~l~~~~~~~ 250 (440)
T 3zyj_A 186 NLRYLNLAMC-NLREIP-----NLTPLIKLDELDLSG--NHLSAIRPGS------FQGLMHLQKLWMIQS-QIQVIERNA 250 (440)
T ss_dssp SCCEEECTTS-CCSSCC-----CCTTCSSCCEEECTT--SCCCEECTTT------TTTCTTCCEEECTTC-CCCEECTTS
T ss_pred ccCeecCCCC-cCcccc-----ccCCCcccCEEECCC--CccCccChhh------hccCccCCEEECCCC-ceeEEChhh
Confidence 9999999995 566665 368889999999999 4666664322 367889999999994 66665 456
Q ss_pred cccccccCeeccccCCCCcccCCCCC--ccCCceEEecCCh
Q 043298 286 IVDLQNLTSLGLYNCPKLKYFPEKGL--PSSLLLLWIEGCP 324 (357)
Q Consensus 286 ~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~c~ 324 (357)
+..+++|+.|++++ ++++.++...+ +++|+.|++++++
T Consensus 251 ~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 251 FDNLQSLVEINLAH-NNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp STTCTTCCEEECTT-SCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred hcCCCCCCEEECCC-CCCCccChhHhccccCCCEEEcCCCC
Confidence 78899999999999 57888877433 6899999998754
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.77 E-value=6.7e-18 Score=149.12 Aligned_cols=195 Identities=19% Similarity=0.223 Sum_probs=105.2
Q ss_pred ceEEEecCCCCchhchhc-cCCCCcccEEEcccccCcccc-CccccCccccceeecccCCCcccc-CCCCcCcccccEEE
Q 043298 91 VKVLDVYGCPKLESIAER-LDNNTSLETISIYNCENLKIL-PSGLHKLHQLREIWIRECGNLVSF-PEGGLPCAKLRRLG 167 (357)
Q Consensus 91 L~~L~l~~c~~~~~~~~~-~~~~~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~ 167 (357)
|++|++++ +.++.++.. +..+.+|++|++++ +.++.+ +..+..+++|++|++++|..+..+ +..+..+++|++|+
T Consensus 34 l~~L~l~~-n~i~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 34 SQRIFLHG-NRISHVPAASFRACRNLTILWLHS-NVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp CSEEECTT-SCCCEECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred ceEEEeeC-CcCCccCHHHcccCCCCCEEECCC-CccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 66666666 455555432 23344566777666 445544 445566666667766665445555 34455566666666
Q ss_pred eecCCCcccccccccCCCCCceEEecC-ccCCccC--CCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeecC
Q 043298 168 IYDCERLEALPKGLHNLSSLQELTIGG-ELPSLEE--DGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGC 244 (357)
Q Consensus 168 l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~ 244 (357)
+++|......+..+..+++|++|++++ .++.++. ...+++|++|++++| .++.+++. .+..+++|+.|++++
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~---~~~~l~~L~~L~l~~- 186 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN-RISSVPER---AFRGLHSLDRLLLHQ- 186 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCEECTT---TTTTCTTCCEEECCS-
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC-cccccCHH---HhcCccccCEEECCC-
Confidence 666554443345566666666666666 5555443 233556666666663 34444322 345556666666666
Q ss_pred CCCCCcCccccccccCCCCCCCCccEEEcCccccCccccc-ccccccccCeeccccC
Q 043298 245 DDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLEHLSS-SIVDLQNLTSLGLYNC 300 (357)
Q Consensus 245 c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~c 300 (357)
+.+..+.... +..+++|+.|+++++ .+..++. .+..+++|++|++.++
T Consensus 187 -n~l~~~~~~~------~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 187 -NRVAHVHPHA------FRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp -SCCCEECTTT------TTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSS
T ss_pred -CcccccCHhH------ccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCC
Confidence 2333332111 134556666666663 4444432 3455566666666553
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.77 E-value=4.3e-18 Score=150.39 Aligned_cols=172 Identities=22% Similarity=0.272 Sum_probs=88.6
Q ss_pred ceEEEecCCCCchhc-hhccCCCCcccEEEcccccCcccc-CccccCccccceeecccCCCcccc-CCCCcCcccccEEE
Q 043298 91 VKVLDVYGCPKLESI-AERLDNNTSLETISIYNCENLKIL-PSGLHKLHQLREIWIRECGNLVSF-PEGGLPCAKLRRLG 167 (357)
Q Consensus 91 L~~L~l~~c~~~~~~-~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~ 167 (357)
|++|++++ +.++.+ +..+..+.+|++|+++++..++.+ +..+..+++|++|++++|. +..+ +..+..+++|++|+
T Consensus 58 L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~ 135 (285)
T 1ozn_A 58 LTILWLHS-NVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLY 135 (285)
T ss_dssp CCEEECCS-SCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEE
T ss_pred CCEEECCC-CccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEE
Confidence 55555555 334443 222233344555555553334444 3445555666666665543 2333 33444555666666
Q ss_pred eecCCCcccccccccCCCCCceEEecC-ccCCccC--CCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeecC
Q 043298 168 IYDCERLEALPKGLHNLSSLQELTIGG-ELPSLEE--DGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGC 244 (357)
Q Consensus 168 l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~ 244 (357)
+++|......+..++.+++|++|++++ .++.++. ...+++|+.|++++| .+....+. .+..+++|+.|++++
T Consensus 136 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~---~~~~l~~L~~L~l~~- 210 (285)
T 1ozn_A 136 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN-RVAHVHPH---AFRDLGRLMTLYLFA- 210 (285)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTT---TTTTCTTCCEEECCS-
T ss_pred CCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCC-cccccCHh---HccCcccccEeeCCC-
Confidence 665433222223455566666666665 4544443 333566666666663 33433322 456667777777777
Q ss_pred CCCCCcCccccccccCCCCCCCCccEEEcCcc
Q 043298 245 DDDMVSFPLEDKRLGTALPLPASLTSLWIEDF 276 (357)
Q Consensus 245 c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c 276 (357)
+.+..++... +..+++|+.|+++++
T Consensus 211 -n~l~~~~~~~------~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 211 -NNLSALPTEA------LAPLRALQYLRLNDN 235 (285)
T ss_dssp -SCCSCCCHHH------HTTCTTCCEEECCSS
T ss_pred -CcCCcCCHHH------cccCcccCEEeccCC
Confidence 3555555332 135567777777764
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.77 E-value=1.4e-17 Score=156.88 Aligned_cols=236 Identities=17% Similarity=0.234 Sum_probs=173.9
Q ss_pred ccEEEEecCCCccccccCCCCCCcccceecccCCCcceEEEecCCCCchhchh-ccCCCCcccEEEcccccCccccC-cc
Q 043298 55 LEELFVFNCDSLTCIFSKYELPATLESLEVGNLPSSVKVLDVYGCPKLESIAE-RLDNNTSLETISIYNCENLKILP-SG 132 (357)
Q Consensus 55 L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~l~~~L~~L~l~~c~~~~~~~~-~~~~~~~L~~L~l~~c~~l~~l~-~~ 132 (357)
.+.++..+ ..++.+ |.. .+ +. +++|++++ +.++.++. .+..+.+|++|++++ +.++.++ ..
T Consensus 56 ~~~v~c~~-~~l~~i-P~~-~~-----------~~-l~~L~L~~-n~i~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~ 118 (452)
T 3zyi_A 56 FSKVVCTR-RGLSEV-PQG-IP-----------SN-TRYLNLME-NNIQMIQADTFRHLHHLEVLQLGR-NSIRQIEVGA 118 (452)
T ss_dssp SCEEECCS-SCCSSC-CSC-CC-----------TT-CSEEECCS-SCCCEECTTTTTTCTTCCEEECCS-SCCCEECTTT
T ss_pred CcEEEECC-CCcCcc-CCC-CC-----------CC-ccEEECcC-CcCceECHHHcCCCCCCCEEECCC-CccCCcChhh
Confidence 45665555 456666 543 11 23 88999998 56776643 345567799999998 5777664 66
Q ss_pred ccCccccceeecccCCCccccCC-CCcCcccccEEEeecCCCcccccccccCCCCCceEEecC--ccCCccC--CCCCCc
Q 043298 133 LHKLHQLREIWIRECGNLVSFPE-GGLPCAKLRRLGIYDCERLEALPKGLHNLSSLQELTIGG--ELPSLEE--DGLPTN 207 (357)
Q Consensus 133 ~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~--~~~~~~~--~~~~~~ 207 (357)
+.++++|+.|++++| .+..++. .+..+++|++|++++|......+..+..+++|++|++.+ .++.++. ...+++
T Consensus 119 ~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~ 197 (452)
T 3zyi_A 119 FNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFN 197 (452)
T ss_dssp TTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTT
T ss_pred ccCcccCCEEECCCC-cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCC
Confidence 788999999999985 5667765 467789999999998664433334788999999999987 5555554 455789
Q ss_pred cceEEecCCcchhhhhhhcccccCCCCCcceEEeecCCCCCCcCccccccccCCCCCCCCccEEEcCccccCccc-cccc
Q 043298 208 LHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLEHL-SSSI 286 (357)
Q Consensus 208 L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i-~~~~ 286 (357)
|+.|++++| .++.++ .+..+++|++|++++ +.+..++... +..+++|+.|+++++ .+..+ +..+
T Consensus 198 L~~L~L~~n-~l~~~~-----~~~~l~~L~~L~Ls~--N~l~~~~~~~------~~~l~~L~~L~L~~n-~l~~~~~~~~ 262 (452)
T 3zyi_A 198 LKYLNLGMC-NIKDMP-----NLTPLVGLEELEMSG--NHFPEIRPGS------FHGLSSLKKLWVMNS-QVSLIERNAF 262 (452)
T ss_dssp CCEEECTTS-CCSSCC-----CCTTCTTCCEEECTT--SCCSEECGGG------GTTCTTCCEEECTTS-CCCEECTTTT
T ss_pred CCEEECCCC-cccccc-----cccccccccEEECcC--CcCcccCccc------ccCccCCCEEEeCCC-cCceECHHHh
Confidence 999999995 566555 367889999999999 5566654332 257889999999994 56655 5567
Q ss_pred ccccccCeeccccCCCCcccCCCCC--ccCCceEEecCCh
Q 043298 287 VDLQNLTSLGLYNCPKLKYFPEKGL--PSSLLLLWIEGCP 324 (357)
Q Consensus 287 ~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~c~ 324 (357)
..+++|+.|+++++ +++.++...+ +++|+.|++++++
T Consensus 263 ~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 263 DGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred cCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 88999999999984 7888877433 6889999998764
No 62
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.76 E-value=1.1e-18 Score=165.55 Aligned_cols=235 Identities=13% Similarity=0.093 Sum_probs=183.3
Q ss_pred ccccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCCCCCCcccceecccCCCcceEEEecC
Q 043298 19 PSSLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKYELPATLESLEVGNLPSSVKVLDVYG 98 (357)
Q Consensus 19 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~l~~~L~~L~l~~ 98 (357)
+++|+.|++++|. +..++.. .+..++ +|++|+++++ .++.. ++ +..+++ |++|++++
T Consensus 33 ~~~L~~L~Ls~n~-l~~~~~~------~~~~l~--~L~~L~Ls~N-~l~~~-~~-----------l~~l~~-L~~L~Ls~ 89 (487)
T 3oja_A 33 AWNVKELDLSGNP-LSQISAA------DLAPFT--KLELLNLSSN-VLYET-LD-----------LESLST-LRTLDLNN 89 (487)
T ss_dssp GGGCCEEECCSSC-CCCCCGG------GGTTCT--TCCEEECTTS-CCEEE-EE-----------CTTCTT-CCEEECCS
T ss_pred CCCccEEEeeCCc-CCCCCHH------HHhCCC--CCCEEEeeCC-CCCCC-cc-----------cccCCC-CCEEEecC
Confidence 5699999999987 7777755 567777 9999999995 56655 32 234555 99999999
Q ss_pred CCCchhchhccCCCCcccEEEcccccCccccCccccCccccceeecccCCCccccCCCCcCcccccEEEeecCCCccccc
Q 043298 99 CPKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSFPEGGLPCAKLRRLGIYDCERLEALP 178 (357)
Q Consensus 99 c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 178 (357)
+.++.++.. .+|+.|++++ +.+..++. ..+++|+.|++++|......|..+..+++|+.|++++|......|
T Consensus 90 -N~l~~l~~~----~~L~~L~L~~-N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (487)
T 3oja_A 90 -NYVQELLVG----PSIETLHAAN-NNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (487)
T ss_dssp -SEEEEEEEC----TTCCEEECCS-SCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEG
T ss_pred -CcCCCCCCC----CCcCEEECcC-CcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcCh
Confidence 578877652 4699999999 66776653 347899999999965444445577788999999999987666667
Q ss_pred cccc-CCCCCceEEecC-ccCCccCCCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeecCCCCCCcCccccc
Q 043298 179 KGLH-NLSSLQELTIGG-ELPSLEEDGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDMVSFPLEDK 256 (357)
Q Consensus 179 ~~~~-~l~~L~~L~l~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~~~~~~~ 256 (357)
..+. .+++|+.|++++ .++.++....+++|+.|++++| .++.+++ .+..+++|+.|++++ +.+..+|...
T Consensus 162 ~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~----~~~~l~~L~~L~Ls~--N~l~~lp~~l- 233 (487)
T 3oja_A 162 AELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSN-KLAFMGP----EFQSAAGVTWISLRN--NKLVLIEKAL- 233 (487)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSS-CCCEECG----GGGGGTTCSEEECTT--SCCCEECTTC-
T ss_pred HHHhhhCCcccEEecCCCccccccccccCCCCCEEECCCC-CCCCCCH----hHcCCCCccEEEecC--CcCcccchhh-
Confidence 6765 789999999999 8887777777899999999994 5666664 367889999999999 5677777655
Q ss_pred cccCCCCCCCCccEEEcCccccC-cccccccccccccCeeccc
Q 043298 257 RLGTALPLPASLTSLWIEDFPNL-EHLSSSIVDLQNLTSLGLY 298 (357)
Q Consensus 257 ~~~~~~~~~~~L~~L~l~~c~~l-~~i~~~~~~~~~L~~L~l~ 298 (357)
..+++|+.|++++++.. ..+|.++..++.++.+++.
T Consensus 234 ------~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 234 ------RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp ------CCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred ------ccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 57789999999996543 2667677788888888775
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.74 E-value=4.2e-19 Score=159.02 Aligned_cols=81 Identities=17% Similarity=0.168 Sum_probs=44.6
Q ss_pred CCCCCcceEEeecCCCCCCcCcc-ccccccCCCCCCCCccEEEcCccccCcccccccccccccCeeccccCCCCcccCCC
Q 043298 231 HRFSSLGHLKIGGCDDDMVSFPL-EDKRLGTALPLPASLTSLWIEDFPNLEHLSSSIVDLQNLTSLGLYNCPKLKYFPEK 309 (357)
Q Consensus 231 ~~~~~L~~L~l~~~c~~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~ 309 (357)
..+++|++|++++ +.+...+. .. +..+++|++|++++ +.++.+|..+. ++|++|++++ ++++.+|..
T Consensus 225 ~~l~~L~~L~Ls~--N~l~~~~~~~~------~~~l~~L~~L~Ls~-N~l~~ip~~~~--~~L~~L~Ls~-N~l~~~p~~ 292 (312)
T 1wwl_A 225 AARVQLQGLDLSH--NSLRDAAGAPS------CDWPSQLNSLNLSF-TGLKQVPKGLP--AKLSVLDLSY-NRLDRNPSP 292 (312)
T ss_dssp HTTCCCSEEECTT--SCCCSSCCCSC------CCCCTTCCEEECTT-SCCSSCCSSCC--SEEEEEECCS-SCCCSCCCT
T ss_pred hcCCCCCEEECCC--CcCCcccchhh------hhhcCCCCEEECCC-CccChhhhhcc--CCceEEECCC-CCCCCChhH
Confidence 4556666666666 33433221 11 12346666666666 34556665433 5666666666 356665553
Q ss_pred CCccCCceEEecCC
Q 043298 310 GLPSSLLLLWIEGC 323 (357)
Q Consensus 310 ~~~~~L~~L~i~~c 323 (357)
..+++|++|+++++
T Consensus 293 ~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 293 DELPQVGNLSLKGN 306 (312)
T ss_dssp TTSCEEEEEECTTC
T ss_pred hhCCCCCEEeccCC
Confidence 34566666666654
No 64
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.73 E-value=5e-17 Score=139.74 Aligned_cols=206 Identities=17% Similarity=0.225 Sum_probs=159.5
Q ss_pred cCCccccccccccccccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCCCCCCcccceecc
Q 043298 6 HCRSLTYIAAVQLPSSLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKYELPATLESLEVG 85 (357)
Q Consensus 6 ~c~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~ 85 (357)
+|.+++.+|. +.++|++|+++++. ++.+|.. .+..++ +|++|+++++..++.+ +... +.
T Consensus 19 ~c~~l~~ip~--~~~~l~~L~l~~n~-l~~i~~~------~~~~l~--~L~~L~l~~n~~l~~i-~~~~---------f~ 77 (239)
T 2xwt_C 19 TCKDIQRIPS--LPPSTQTLKLIETH-LRTIPSH------AFSNLP--NISRIYVSIDVTLQQL-ESHS---------FY 77 (239)
T ss_dssp EECSCSSCCC--CCTTCCEEEEESCC-CSEECTT------TTTTCT--TCCEEEEECCSSCCEE-CTTT---------EE
T ss_pred EccCccccCC--CCCcccEEEEeCCc-ceEECHH------HccCCC--CCcEEeCCCCCCccee-CHhH---------cC
Confidence 3777888887 77899999999987 8888886 677888 9999999996557777 5431 12
Q ss_pred cCCCcceEEEecCCCCchhchhcc-CCCCcccEEEcccccCccccCccccCccccc---eeecccCCCccccCC-CCcCc
Q 043298 86 NLPSSVKVLDVYGCPKLESIAERL-DNNTSLETISIYNCENLKILPSGLHKLHQLR---EIWIRECGNLVSFPE-GGLPC 160 (357)
Q Consensus 86 ~l~~~L~~L~l~~c~~~~~~~~~~-~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~---~L~l~~~~~l~~~~~-~~~~l 160 (357)
.+++ |++|++++|+.++.++... ..+.+|++|++++ +.++.+|. +..+++|+ .|++++|+.++.++. .+..+
T Consensus 78 ~l~~-L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~-n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l 154 (239)
T 2xwt_C 78 NLSK-VTHIEIRNTRNLTYIDPDALKELPLLKFLGIFN-TGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGL 154 (239)
T ss_dssp SCTT-CCEEEEEEETTCCEECTTSEECCTTCCEEEEEE-ECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTT
T ss_pred CCcC-CcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCC-CCCccccc-cccccccccccEEECCCCcchhhcCcccccch
Confidence 4455 9999999877888887543 3456699999999 67888886 77888888 999999757888875 46778
Q ss_pred cccc-EEEeecCCCcccccccccCCCCCceEEecC-c-cCCccC--CCCC-CccceEEecCCcchhhhhhhcccccCCCC
Q 043298 161 AKLR-RLGIYDCERLEALPKGLHNLSSLQELTIGG-E-LPSLEE--DGLP-TNLHSLDIWGNMEIWKSMIERGRGFHRFS 234 (357)
Q Consensus 161 ~~L~-~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~-~~~~~~--~~~~-~~L~~L~l~~~~~l~~~~~~~~~~l~~~~ 234 (357)
++|+ .|++++|. ++.+|......++|++|++.+ . ++.++. ...+ ++|+.|++++ +.++.++. ..++
T Consensus 155 ~~L~~~L~l~~n~-l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~------~~~~ 226 (239)
T 2xwt_C 155 CNETLTLKLYNNG-FTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPS------KGLE 226 (239)
T ss_dssp BSSEEEEECCSCC-CCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCCCCC------TTCT
T ss_pred hcceeEEEcCCCC-CcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-CccccCCh------hHhc
Confidence 9999 99999855 457766444448999999988 4 877765 3445 8999999999 55665552 3678
Q ss_pred CcceEEeec
Q 043298 235 SLGHLKIGG 243 (357)
Q Consensus 235 ~L~~L~l~~ 243 (357)
+|+.|++++
T Consensus 227 ~L~~L~l~~ 235 (239)
T 2xwt_C 227 HLKELIARN 235 (239)
T ss_dssp TCSEEECTT
T ss_pred cCceeeccC
Confidence 899999887
No 65
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.73 E-value=1.7e-16 Score=155.26 Aligned_cols=154 Identities=20% Similarity=0.123 Sum_probs=107.4
Q ss_pred CccccceeecccCCCccccC-CCCcCcccccEEEeecCCCcccccccccCCCCCceEEecC-c-cCC-ccC-CCCCCccc
Q 043298 135 KLHQLREIWIRECGNLVSFP-EGGLPCAKLRRLGIYDCERLEALPKGLHNLSSLQELTIGG-E-LPS-LEE-DGLPTNLH 209 (357)
Q Consensus 135 ~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~-~~~-~~~-~~~~~~L~ 209 (357)
.+++|+.+++..+......+ ..+..+++++.++++.|......+..+..+++++.|++++ . ... .|. ...+++|+
T Consensus 418 ~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~ 497 (635)
T 4g8a_A 418 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 497 (635)
T ss_dssp TCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred ccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccC
Confidence 34455555555443333322 2345567777777777665555566778889999999987 2 333 222 55678999
Q ss_pred eEEecCCcchhhhhhhcccccCCCCCcceEEeecCCCCCCcCccccccccCCCCCCCCccEEEcCccccCccc-cccccc
Q 043298 210 SLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLEHL-SSSIVD 288 (357)
Q Consensus 210 ~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i-~~~~~~ 288 (357)
+|++++| .++.+++. .+.++++|++|++++ +.+..++... +..+++|++|++++ +.+..+ |..+..
T Consensus 498 ~L~Ls~N-~L~~l~~~---~f~~l~~L~~L~Ls~--N~l~~l~~~~------~~~l~~L~~L~Ls~-N~l~~~~~~~l~~ 564 (635)
T 4g8a_A 498 FLDLSQC-QLEQLSPT---AFNSLSSLQVLNMSH--NNFFSLDTFP------YKCLNSLQVLDYSL-NHIMTSKKQELQH 564 (635)
T ss_dssp EEECTTS-CCCEECTT---TTTTCTTCCEEECTT--SCCCBCCCGG------GTTCTTCCEEECTT-SCCCBCCSSCTTC
T ss_pred EEECCCC-ccCCcChH---HHcCCCCCCEEECCC--CcCCCCChhH------HhCCCCCCEEECCC-CcCCCCCHHHHHh
Confidence 9999995 56666654 688999999999999 5777776543 25788999999999 566665 555667
Q ss_pred c-cccCeeccccCC
Q 043298 289 L-QNLTSLGLYNCP 301 (357)
Q Consensus 289 ~-~~L~~L~l~~c~ 301 (357)
+ ++|++|++.+++
T Consensus 565 l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 565 FPSSLAFLNLTQND 578 (635)
T ss_dssp CCTTCCEEECTTCC
T ss_pred hhCcCCEEEeeCCC
Confidence 6 689999998743
No 66
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.71 E-value=2.7e-16 Score=139.12 Aligned_cols=196 Identities=18% Similarity=0.148 Sum_probs=137.3
Q ss_pred CCCCcCCccEEEEecCCCccccccCCCCCCcccceecccCCCcceEEEecCCCCchhchh-ccCCCCcccEEEcccccCc
Q 043298 48 RRYTSSLLEELFVFNCDSLTCIFSKYELPATLESLEVGNLPSSVKVLDVYGCPKLESIAE-RLDNNTSLETISIYNCENL 126 (357)
Q Consensus 48 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~l~~~L~~L~l~~c~~~~~~~~-~~~~~~~L~~L~l~~c~~l 126 (357)
..++ +++++++.+ +.++.+ |..- + +. +++|++++ +.++.++. .+..+.+|++|++++ +.+
T Consensus 7 ~~l~--~l~~l~~~~-~~l~~i-p~~~-~-----------~~-l~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~-n~l 67 (290)
T 1p9a_G 7 SKVA--SHLEVNCDK-RNLTAL-PPDL-P-----------KD-TTILHLSE-NLLYTFSLATLMPYTRLTQLNLDR-AEL 67 (290)
T ss_dssp ECST--TCCEEECTT-SCCSSC-CSCC-C-----------TT-CCEEECTT-SCCSEEEGGGGTTCTTCCEEECTT-SCC
T ss_pred cccC--CccEEECCC-CCCCcC-CCCC-C-----------CC-CCEEEcCC-CcCCccCHHHhhcCCCCCEEECCC-Ccc
Confidence 3444 788888887 567776 6431 1 22 78888888 55665543 334556688888888 667
Q ss_pred cccCccccCccccceeecccCCCccccCCCCcCcccccEEEeecCCCcccccccccCCCCCceEEecC-ccCCccC--CC
Q 043298 127 KILPSGLHKLHQLREIWIRECGNLVSFPEGGLPCAKLRRLGIYDCERLEALPKGLHNLSSLQELTIGG-ELPSLEE--DG 203 (357)
Q Consensus 127 ~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~--~~ 203 (357)
+.++.. +.+++|+.|++++ +.+..+|..+..+++|+.|++++|......+..|..+++|++|++++ .++.++. ..
T Consensus 68 ~~~~~~-~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 145 (290)
T 1p9a_G 68 TKLQVD-GTLPVLGTLDLSH-NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT 145 (290)
T ss_dssp CEEECC-SCCTTCCEEECCS-SCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred CcccCC-CCCCcCCEEECCC-CcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcc
Confidence 776544 6788888888888 46677877777788888888888554333345678888888888888 7777665 34
Q ss_pred CCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeecCCCCCCcCccccccccCCCCCCCCccEEEcCccc
Q 043298 204 LPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFP 277 (357)
Q Consensus 204 ~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 277 (357)
.+++|+.|++++ +.++.+++. .+..+++|+.|++++ +.+..++... ....+|+.+++++++
T Consensus 146 ~l~~L~~L~L~~-N~l~~l~~~---~~~~l~~L~~L~L~~--N~l~~ip~~~-------~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 146 PTPKLEKLSLAN-NNLTELPAG---LLNGLENLDTLLLQE--NSLYTIPKGF-------FGSHLLPFAFLHGNP 206 (290)
T ss_dssp TCTTCCEEECTT-SCCSCCCTT---TTTTCTTCCEEECCS--SCCCCCCTTT-------TTTCCCSEEECCSCC
T ss_pred cccCCCEEECCC-CcCCccCHH---HhcCcCCCCEEECCC--CcCCccChhh-------cccccCCeEEeCCCC
Confidence 467888888888 456666543 467788888888888 5677777655 355678888888643
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.70 E-value=9.5e-17 Score=143.98 Aligned_cols=260 Identities=13% Similarity=0.089 Sum_probs=173.8
Q ss_pred ccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCCCCCCcccceecccCCCcceEEEecCCC
Q 043298 21 SLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKYELPATLESLEVGNLPSSVKVLDVYGCP 100 (357)
Q Consensus 21 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~l~~~L~~L~l~~c~ 100 (357)
+++.++++.+. +...+.. ++...+ +|++|+++++ .++.+ ++. .+..+++ |++|++++ +
T Consensus 11 ~l~i~~ls~~~-l~~~~~~------~~~~~~--~L~~L~L~~n-~l~~~-~~~---------~~~~l~~-L~~L~Ls~-n 68 (317)
T 3o53_A 11 RYKIEKVTDSS-LKQALAS------LRQSAW--NVKELDLSGN-PLSQI-SAA---------DLAPFTK-LELLNLSS-N 68 (317)
T ss_dssp EEEEESCCTTT-HHHHHHH------HHTTGG--GCSEEECTTS-CCCCC-CHH---------HHTTCTT-CCEEECTT-S
T ss_pred ceeEeeccccc-hhhhHHH------HhccCC--CCCEEECcCC-ccCcC-CHH---------HhhCCCc-CCEEECCC-C
Confidence 45556666554 5555555 456666 8999999984 56665 321 1224455 88999998 4
Q ss_pred CchhchhccCCCCcccEEEcccccCccccCccccCccccceeecccCCCccccCCCCcCcccccEEEeecCCCccccccc
Q 043298 101 KLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSFPEGGLPCAKLRRLGIYDCERLEALPKG 180 (357)
Q Consensus 101 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 180 (357)
.++..++ ...+.+|++|++++ +.++.++ ..++|+.|++++| .+..++.. .+++|++|++++|......+..
T Consensus 69 ~l~~~~~-~~~l~~L~~L~Ls~-n~l~~l~----~~~~L~~L~l~~n-~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~ 139 (317)
T 3o53_A 69 VLYETLD-LESLSTLRTLDLNN-NYVQELL----VGPSIETLHAANN-NISRVSCS--RGQGKKNIYLANNKITMLRDLD 139 (317)
T ss_dssp CCEEEEE-ETTCTTCCEEECCS-SEEEEEE----ECTTCCEEECCSS-CCSEEEEC--CCSSCEEEECCSSCCCSGGGBC
T ss_pred cCCcchh-hhhcCCCCEEECcC-Ccccccc----CCCCcCEEECCCC-ccCCcCcc--ccCCCCEEECCCCCCCCccchh
Confidence 5665554 33566799999988 5666554 3478999999885 45555432 2568999999886655544557
Q ss_pred ccCCCCCceEEecC-ccCCccCC---CCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeecCCCCCCcCccccc
Q 043298 181 LHNLSSLQELTIGG-ELPSLEED---GLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDMVSFPLEDK 256 (357)
Q Consensus 181 ~~~l~~L~~L~l~~-~~~~~~~~---~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~~~~~~~ 256 (357)
++.+++|++|++++ .++.++.. ..+++|++|++++| .++.++. ...+++|++|++++ +.+..++...
T Consensus 140 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-----~~~l~~L~~L~Ls~--N~l~~l~~~~- 210 (317)
T 3o53_A 140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKG-----QVVFAKLKTLDLSS--NKLAFMGPEF- 210 (317)
T ss_dssp TGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEEC-----CCCCTTCCEEECCS--SCCCEECGGG-
T ss_pred hhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC-cCccccc-----ccccccCCEEECCC--CcCCcchhhh-
Confidence 78888999999988 65554321 23578888888884 4555542 24578888888888 5666666555
Q ss_pred cccCCCCCCCCccEEEcCccccCcccccccccccccCeeccccCCCCc--ccCC-CCCccCCceEEecCChhhHH
Q 043298 257 RLGTALPLPASLTSLWIEDFPNLEHLSSSIVDLQNLTSLGLYNCPKLK--YFPE-KGLPSSLLLLWIEGCPLIEE 328 (357)
Q Consensus 257 ~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~--~l~~-~~~~~~L~~L~i~~c~~l~~ 328 (357)
..+++|+.|++++ +.+..+|..+..+++|+.|++.+++ +. .++. .+.++.|+.+++.++..++.
T Consensus 211 ------~~l~~L~~L~L~~-N~l~~l~~~~~~l~~L~~L~l~~N~-~~~~~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 211 ------QSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRGNG-FHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp ------GGGTTCSEEECTT-SCCCEECTTCCCCTTCCEEECTTCC-CBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred ------cccCcccEEECcC-CcccchhhHhhcCCCCCEEEccCCC-ccCcCHHHHHhccccceEEECCCchhccC
Confidence 3667888888888 4677888777888888888888853 43 2222 11245677777766665553
No 68
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.70 E-value=3.5e-16 Score=142.23 Aligned_cols=236 Identities=19% Similarity=0.161 Sum_probs=176.6
Q ss_pred ccEEEEecCCCccccccCCCCCCcccceecccCCCcceEEEecCCCCchhchhcc-CCCCcccEEEcccccCccccCc-c
Q 043298 55 LEELFVFNCDSLTCIFSKYELPATLESLEVGNLPSSVKVLDVYGCPKLESIAERL-DNNTSLETISIYNCENLKILPS-G 132 (357)
Q Consensus 55 L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~l~~~L~~L~l~~c~~~~~~~~~~-~~~~~L~~L~l~~c~~l~~l~~-~ 132 (357)
-++++-++ +.++.+ |.. +|.++++|++++ +.++.+|... ..+.+|++|+++++...+.++. .
T Consensus 11 ~~~v~C~~-~~Lt~i-P~~-------------l~~~l~~L~Ls~-N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~ 74 (350)
T 4ay9_X 11 NRVFLCQE-SKVTEI-PSD-------------LPRNAIELRFVL-TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV 74 (350)
T ss_dssp TTEEEEES-TTCCSC-CTT-------------CCTTCSEEEEES-CCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTS
T ss_pred CCEEEecC-CCCCcc-CcC-------------cCCCCCEEEccC-CcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhH
Confidence 46676666 678887 753 122288999999 7899998754 4567799999999544465664 4
Q ss_pred ccCccccceeecccCCCccccCC-CCcCcccccEEEeecCCCccccc-ccccCCCCCceEEecC--ccCCccCCC---CC
Q 043298 133 LHKLHQLREIWIRECGNLVSFPE-GGLPCAKLRRLGIYDCERLEALP-KGLHNLSSLQELTIGG--ELPSLEEDG---LP 205 (357)
Q Consensus 133 ~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~--~~~~~~~~~---~~ 205 (357)
+.++++++++...+++.+..++. .+..+++|+.|++++|.. ..++ ..+....++..+++.. .+..++... ..
T Consensus 75 f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~ 153 (350)
T 4ay9_X 75 FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGI-KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLS 153 (350)
T ss_dssp BCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECC-SSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSB
T ss_pred hhcchhhhhhhcccCCcccccCchhhhhcccccccccccccc-ccCCchhhcccchhhhhhhccccccccccccchhhcc
Confidence 67889988876666677888764 567899999999998654 4444 3455666788888866 666665532 23
Q ss_pred CccceEEecCCcchhhhhhhcccccCCCCCcceEEeecCCCCCCcCccccccccCCCCCCCCccEEEcCccccCcccccc
Q 043298 206 TNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLEHLSSS 285 (357)
Q Consensus 206 ~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~ 285 (357)
..++.|++++ +.++.++.. .....+|+++++.+ ++.+..++... +..+++|+.|++++ +.++.+|.
T Consensus 154 ~~l~~L~L~~-N~i~~i~~~----~f~~~~L~~l~l~~-~n~l~~i~~~~------f~~l~~L~~LdLs~-N~l~~lp~- 219 (350)
T 4ay9_X 154 FESVILWLNK-NGIQEIHNS----AFNGTQLDELNLSD-NNNLEELPNDV------FHGASGPVILDISR-TRIHSLPS- 219 (350)
T ss_dssp SSCEEEECCS-SCCCEECTT----SSTTEEEEEEECTT-CTTCCCCCTTT------TTTEECCSEEECTT-SCCCCCCS-
T ss_pred hhhhhhcccc-ccccCCChh----hccccchhHHhhcc-CCcccCCCHHH------hccCcccchhhcCC-CCcCccCh-
Confidence 5688899998 567766643 34557899999998 78899888654 35778999999999 58999986
Q ss_pred cccccccCeeccccCCCCcccCCCCCccCCceEEecC
Q 043298 286 IVDLQNLTSLGLYNCPKLKYFPEKGLPSSLLLLWIEG 322 (357)
Q Consensus 286 ~~~~~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~ 322 (357)
..+.+|+.|.+.+++.++.+|.-..+++|+.+++.+
T Consensus 220 -~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 220 -YGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp -SSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred -hhhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 557888888888889999999866678999999975
No 69
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.70 E-value=7.9e-16 Score=134.72 Aligned_cols=146 Identities=25% Similarity=0.389 Sum_probs=63.9
Q ss_pred ceEEEecCCCCchhchh-ccCCCCcccEEEcccccCccccCcc-ccCccccceeecccCCCccccCC-CCcCcccccEEE
Q 043298 91 VKVLDVYGCPKLESIAE-RLDNNTSLETISIYNCENLKILPSG-LHKLHQLREIWIRECGNLVSFPE-GGLPCAKLRRLG 167 (357)
Q Consensus 91 L~~L~l~~c~~~~~~~~-~~~~~~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~ 167 (357)
+++|++++ +.++.++. .+..+.+|++|++++ +.++.++.. +..+++|++|+++++ .+..++. .+..+++|++|+
T Consensus 39 l~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~ 115 (270)
T 2o6q_A 39 TKKLDLQS-NKLSSLPSKAFHRLTKLRLLYLND-NKLQTLPAGIFKELKNLETLWVTDN-KLQALPIGVFDQLVNLAELR 115 (270)
T ss_dssp CSEEECCS-SCCSCCCTTSSSSCTTCCEEECCS-SCCSCCCTTTTSSCTTCCEEECCSS-CCCCCCTTTTTTCSSCCEEE
T ss_pred CCEEECcC-CCCCeeCHHHhcCCCCCCEEECCC-CccCeeChhhhcCCCCCCEEECCCC-cCCcCCHhHcccccCCCEEE
Confidence 55555555 33444433 122334455555555 344444433 244555555555553 2333332 234445555555
Q ss_pred eecCCCcccccccccCCCCCceEEecC-ccCCccC--CCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeec
Q 043298 168 IYDCERLEALPKGLHNLSSLQELTIGG-ELPSLEE--DGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGG 243 (357)
Q Consensus 168 l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~ 243 (357)
+++|......+..++.+++|++|++++ .++.++. ...+++|++|++++| .++.+++. .+..+++|+.|++++
T Consensus 116 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~---~~~~l~~L~~L~L~~ 190 (270)
T 2o6q_A 116 LDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN-QLKRVPEG---AFDKLTELKTLKLDN 190 (270)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTT---TTTTCTTCCEEECCS
T ss_pred CCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCC-cCcEeChh---HhccCCCcCEEECCC
Confidence 555332222223344555555555554 4444433 223444555555442 23333321 234444455555544
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.69 E-value=4.6e-16 Score=136.61 Aligned_cols=192 Identities=21% Similarity=0.261 Sum_probs=78.9
Q ss_pred cccEEEcccccCccccCc-cccCccccceeecccCCCccccCC-CCcCcccccEEEeecCCCcccccccccCCCCCceEE
Q 043298 114 SLETISIYNCENLKILPS-GLHKLHQLREIWIRECGNLVSFPE-GGLPCAKLRRLGIYDCERLEALPKGLHNLSSLQELT 191 (357)
Q Consensus 114 ~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 191 (357)
++++|++++ +.++.++. .+..+++|++|++++| .+..++. .+..+++|++|++++|......+..+..+++|++|+
T Consensus 29 ~l~~L~ls~-n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 29 STKNLDLSF-NPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TCCEEECTT-CCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CccEEECCC-CcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 344444444 33333332 3344444444444443 2233322 334444455555444332222223444445555555
Q ss_pred ecC-ccCCccC--CCCCCccceEEecCCcchhhhh-hhcccccCCCCCcceEEeecCCCCCCcCccccccccCCCCCCCC
Q 043298 192 IGG-ELPSLEE--DGLPTNLHSLDIWGNMEIWKSM-IERGRGFHRFSSLGHLKIGGCDDDMVSFPLEDKRLGTALPLPAS 267 (357)
Q Consensus 192 l~~-~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~-~~~~~~l~~~~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~ 267 (357)
+.+ .+..++. ...+++|++|++++|. ++.+. + ..+..+++|++|++++ +.+..++... +..+.+
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~---~~~~~l~~L~~L~Ls~--N~l~~~~~~~------~~~l~~ 174 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLP---EYFSNLTNLEHLDLSS--NKIQSIYCTD------LRVLHQ 174 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCC---GGGGGCTTCCEEECCS--SCCCEECGGG------GHHHHT
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCc-cceecCc---hhhccCCCCCEEECCC--CCCCcCCHHH------hhhhhh
Confidence 444 3333322 2334455555555422 22211 1 1234455555555555 2333332211 011222
Q ss_pred cc----EEEcCccccCcccccccccccccCeeccccCCCCcccCCCC--CccCCceEEec
Q 043298 268 LT----SLWIEDFPNLEHLSSSIVDLQNLTSLGLYNCPKLKYFPEKG--LPSSLLLLWIE 321 (357)
Q Consensus 268 L~----~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~--~~~~L~~L~i~ 321 (357)
|+ +|++++ +.+..++.......+|++|+++++ .++.++... .+++|+.|+++
T Consensus 175 L~~l~l~L~ls~-n~l~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~ 232 (276)
T 2z62_A 175 MPLLNLSLDLSL-NPMNFIQPGAFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLH 232 (276)
T ss_dssp CTTCCEEEECCS-SCCCEECTTSSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECC
T ss_pred ccccceeeecCC-CcccccCccccCCCcccEEECCCC-ceeecCHhHhcccccccEEEcc
Confidence 22 455555 344444433333335555555552 344444421 24455555555
No 71
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.69 E-value=1.3e-15 Score=138.55 Aligned_cols=237 Identities=18% Similarity=0.186 Sum_probs=180.9
Q ss_pred ceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCCCCCCcccceecccCCCcceEEEecCCCCc
Q 043298 23 KNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKYELPATLESLEVGNLPSSVKVLDVYGCPKL 102 (357)
Q Consensus 23 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~l~~~L~~L~l~~c~~~ 102 (357)
++++.++.. ++++|.. + .+ ++++|++++ +.++.+ |... +. .+++ |++|+++++...
T Consensus 12 ~~v~C~~~~-Lt~iP~~------l---~~--~l~~L~Ls~-N~i~~i-~~~~-f~--------~l~~-L~~L~Ls~N~i~ 67 (350)
T 4ay9_X 12 RVFLCQESK-VTEIPSD------L---PR--NAIELRFVL-TKLRVI-QKGA-FS--------GFGD-LEKIEISQNDVL 67 (350)
T ss_dssp TEEEEESTT-CCSCCTT------C---CT--TCSEEEEES-CCCSEE-CTTS-ST--------TCTT-CCEEEEECCTTC
T ss_pred CEEEecCCC-CCccCcC------c---CC--CCCEEEccC-CcCCCc-CHHH-Hc--------CCCC-CCEEECcCCCCC
Confidence 556666554 8888876 3 34 899999999 678888 6542 22 3444 999999996544
Q ss_pred hhchhcc-CCCCcccEEEcccccCccccC-ccccCccccceeecccCCCccccCC-CCcCcccccEEEeecCCCcccccc
Q 043298 103 ESIAERL-DNNTSLETISIYNCENLKILP-SGLHKLHQLREIWIRECGNLVSFPE-GGLPCAKLRRLGIYDCERLEALPK 179 (357)
Q Consensus 103 ~~~~~~~-~~~~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~ 179 (357)
+.++... ..+.+++++...+++.+..++ ..+..+++|+.|++++| .+..++. .+....++..+++.++..+..++.
T Consensus 68 ~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~ 146 (350)
T 4ay9_X 68 EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIER 146 (350)
T ss_dssp CEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECT
T ss_pred CccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccccccc-ccccCCchhhcccchhhhhhhccccccccccc
Confidence 5566543 234456766555558898885 56789999999999985 5666654 445567888999988888887765
Q ss_pred -cccCCC-CCceEEecC-ccCCccCCC-CCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeecCCCCCCcCcccc
Q 043298 180 -GLHNLS-SLQELTIGG-ELPSLEEDG-LPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDMVSFPLED 255 (357)
Q Consensus 180 -~~~~l~-~L~~L~l~~-~~~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~~~~~~ 255 (357)
.+..+. .++.|++++ .++.++... ...+|+++++.+++.++.++.. .+..+++|++|++++ +.++.+|..
T Consensus 147 ~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~---~f~~l~~L~~LdLs~--N~l~~lp~~- 220 (350)
T 4ay9_X 147 NSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPND---VFHGASGPVILDISR--TRIHSLPSY- 220 (350)
T ss_dssp TSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTT---TTTTEECCSEEECTT--SCCCCCCSS-
T ss_pred cchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHH---HhccCcccchhhcCC--CCcCccChh-
Confidence 455554 689999999 888887633 3578999999998999988864 678999999999999 688888863
Q ss_pred ccccCCCCCCCCccEEEcCccccCcccccccccccccCeecccc
Q 043298 256 KRLGTALPLPASLTSLWIEDFPNLEHLSSSIVDLQNLTSLGLYN 299 (357)
Q Consensus 256 ~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~ 299 (357)
.+.+|+.|.+.+++.++.+| .+..+++|+.+++.+
T Consensus 221 --------~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 221 --------GLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp --------SCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred --------hhccchHhhhccCCCcCcCC-CchhCcChhhCcCCC
Confidence 45789999999999999998 478899999998865
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.67 E-value=3.6e-15 Score=130.52 Aligned_cols=192 Identities=22% Similarity=0.294 Sum_probs=132.2
Q ss_pred ceEEEecCCCCchhchhccCCCCcccEEEcccccCccccCc-cccCccccceeecccCCCccccCCC-CcCcccccEEEe
Q 043298 91 VKVLDVYGCPKLESIAERLDNNTSLETISIYNCENLKILPS-GLHKLHQLREIWIRECGNLVSFPEG-GLPCAKLRRLGI 168 (357)
Q Consensus 91 L~~L~l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l 168 (357)
.+.+++++ +.++.+|... +.++++|++++ +.++.++. .+..+++|+.|+++++ .+..++.. +..+++|++|++
T Consensus 18 ~~~l~~~~-~~l~~ip~~~--~~~l~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 18 KNSVDCSS-KKLTAIPSNI--PADTKKLDLQS-NKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTEEECTT-SCCSSCCSCC--CTTCSEEECCS-SCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEEC
T ss_pred CCEEEccC-CCCCccCCCC--CCCCCEEECcC-CCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEEC
Confidence 67788887 6788887754 46688999888 56776654 5778888889988884 56666654 466888888888
Q ss_pred ecCCCcccccccccCCCCCceEEecC-ccCCccC--CCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeecCC
Q 043298 169 YDCERLEALPKGLHNLSSLQELTIGG-ELPSLEE--DGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCD 245 (357)
Q Consensus 169 ~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c 245 (357)
++|......+..+..+++|++|++.+ .++.++. ...+++|+.|++++| .++.+++. .+..+++|++|++++
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~---~~~~l~~L~~L~L~~-- 166 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKG---VFDKLTSLKELRLYN-- 166 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT---TTTTCTTCCEEECCS--
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC-cCCccCHh---HccCCcccceeEecC--
Confidence 88654333334567788888888887 6666654 345678888888874 45555432 466777888888877
Q ss_pred CCCCcCccccccccCCCCCCCCccEEEcCccccCccccc-ccccccccCeeccccC
Q 043298 246 DDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLEHLSS-SIVDLQNLTSLGLYNC 300 (357)
Q Consensus 246 ~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~c 300 (357)
+.+..++... +..+++|++|+++++ .++.++. .+..+++|+.|++.++
T Consensus 167 n~l~~~~~~~------~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 167 NQLKRVPEGA------FDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp SCCSCCCTTT------TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CcCcEeChhH------hccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCC
Confidence 4555555432 245677888888774 5666654 3566777777777764
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.67 E-value=4.4e-16 Score=147.74 Aligned_cols=210 Identities=15% Similarity=0.098 Sum_probs=136.8
Q ss_pred CccEEEEecCCCccccccCCCCCCcccceecccCCCcceEEEecCCCCchhchhccCCCCcccEEEcccccCccccCccc
Q 043298 54 LLEELFVFNCDSLTCIFSKYELPATLESLEVGNLPSSVKVLDVYGCPKLESIAERLDNNTSLETISIYNCENLKILPSGL 133 (357)
Q Consensus 54 ~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~l~~~L~~L~l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~ 133 (357)
+|++|+++++ .++.+ ++. . +..+++ |++|++++ +.++..++ ++.+.+|++|++++ +.++.++.
T Consensus 35 ~L~~L~Ls~n-~l~~~-~~~-~--------~~~l~~-L~~L~Ls~-N~l~~~~~-l~~l~~L~~L~Ls~-N~l~~l~~-- 97 (487)
T 3oja_A 35 NVKELDLSGN-PLSQI-SAA-D--------LAPFTK-LELLNLSS-NVLYETLD-LESLSTLRTLDLNN-NYVQELLV-- 97 (487)
T ss_dssp GCCEEECCSS-CCCCC-CGG-G--------GTTCTT-CCEEECTT-SCCEEEEE-CTTCTTCCEEECCS-SEEEEEEE--
T ss_pred CccEEEeeCC-cCCCC-CHH-H--------HhCCCC-CCEEEeeC-CCCCCCcc-cccCCCCCEEEecC-CcCCCCCC--
Confidence 7888888884 56655 322 1 224455 88888888 45555444 33556688888888 56665542
Q ss_pred cCccccceeecccCCCccccCCCCcCcccccEEEeecCCCcccccccccCCCCCceEEecC-ccCCccC--C-CCCCccc
Q 043298 134 HKLHQLREIWIRECGNLVSFPEGGLPCAKLRRLGIYDCERLEALPKGLHNLSSLQELTIGG-ELPSLEE--D-GLPTNLH 209 (357)
Q Consensus 134 ~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~--~-~~~~~L~ 209 (357)
.++|+.|++++|. +..++.. .+++|+.|++++|......|..++.+++|+.|++++ .++..+. . ..+++|+
T Consensus 98 --~~~L~~L~L~~N~-l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~ 172 (487)
T 3oja_A 98 --GPSIETLHAANNN-ISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172 (487)
T ss_dssp --CTTCCEEECCSSC-CCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCC
T ss_pred --CCCcCEEECcCCc-CCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCccc
Confidence 3788888888853 4444332 346788888888665555566777788888888877 5554322 1 1357788
Q ss_pred eEEecCCcchhhhhhhcccccCCCCCcceEEeecCCCCCCcCccccccccCCCCCCCCccEEEcCccccCcccccccccc
Q 043298 210 SLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLEHLSSSIVDL 289 (357)
Q Consensus 210 ~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~ 289 (357)
.|++++| .++.++. ...+++|+.|++++ +.+..++... ..+++|+.|++++ +.+..+|..+..+
T Consensus 173 ~L~Ls~N-~l~~~~~-----~~~l~~L~~L~Ls~--N~l~~~~~~~-------~~l~~L~~L~Ls~-N~l~~lp~~l~~l 236 (487)
T 3oja_A 173 HLNLQYN-FIYDVKG-----QVVFAKLKTLDLSS--NKLAFMGPEF-------QSAAGVTWISLRN-NKLVLIEKALRFS 236 (487)
T ss_dssp EEECTTS-CCCEEEC-----CCCCTTCCEEECCS--SCCCEECGGG-------GGGTTCSEEECTT-SCCCEECTTCCCC
T ss_pred EEecCCC-ccccccc-----cccCCCCCEEECCC--CCCCCCCHhH-------cCCCCccEEEecC-CcCcccchhhccC
Confidence 8888774 3554442 24577788888877 4566665544 3567778888877 4666777767777
Q ss_pred cccCeeccccCC
Q 043298 290 QNLTSLGLYNCP 301 (357)
Q Consensus 290 ~~L~~L~l~~c~ 301 (357)
++|+.|++.+++
T Consensus 237 ~~L~~L~l~~N~ 248 (487)
T 3oja_A 237 QNLEHFDLRGNG 248 (487)
T ss_dssp TTCCEEECTTCC
T ss_pred CCCCEEEcCCCC
Confidence 777777777743
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.66 E-value=8e-17 Score=144.13 Aligned_cols=193 Identities=18% Similarity=0.191 Sum_probs=105.4
Q ss_pred CCCcceEEEecCCCCch-hchhcc--CCCCcccEEEcccccCccccCccccCc-----cccceeecccCCCccccC-CCC
Q 043298 87 LPSSVKVLDVYGCPKLE-SIAERL--DNNTSLETISIYNCENLKILPSGLHKL-----HQLREIWIRECGNLVSFP-EGG 157 (357)
Q Consensus 87 l~~~L~~L~l~~c~~~~-~~~~~~--~~~~~L~~L~l~~c~~l~~l~~~~~~l-----~~L~~L~l~~~~~l~~~~-~~~ 157 (357)
+++ |++|++++| .++ .+|... +.+.+|++|++++ +.++.+|..+..+ ++|++|++++|. +..++ ..+
T Consensus 94 l~~-L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~ 169 (312)
T 1wwl_A 94 ISG-LQELTLENL-EVTGTAPPPLLEATGPDLNILNLRN-VSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQV 169 (312)
T ss_dssp TSC-CCEEEEEEE-BCBSCCCCCSSSCCSCCCSEEEEES-CBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTC
T ss_pred cCC-ccEEEccCC-cccchhHHHHHHhcCCCccEEEccC-CCCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHh
Confidence 444 666666663 333 344432 3455566666666 4555555555544 666666666643 33333 455
Q ss_pred cCcccccEEEeecCCCccc--ccccc--cCCCCCceEEecC-ccCCccC-----CCCCCccceEEecCCcchhhhhhhcc
Q 043298 158 LPCAKLRRLGIYDCERLEA--LPKGL--HNLSSLQELTIGG-ELPSLEE-----DGLPTNLHSLDIWGNMEIWKSMIERG 227 (357)
Q Consensus 158 ~~l~~L~~L~l~~~~~~~~--~~~~~--~~l~~L~~L~l~~-~~~~~~~-----~~~~~~L~~L~l~~~~~l~~~~~~~~ 227 (357)
..+++|++|++++|+..+. ++..+ +.+++|++|++++ .++.++. ...+++|+.|++++| .+...++.
T Consensus 170 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~-- 246 (312)
T 1wwl_A 170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN-SLRDAAGA-- 246 (312)
T ss_dssp CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTS-CCCSSCCC--
T ss_pred ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCC-cCCcccch--
Confidence 5666666666666554333 22222 5666666666666 5543221 123456666666663 33332211
Q ss_pred cccCCCCCcceEEeecCCCCCCcCccccccccCCCCCCCCccEEEcCccccCcccccccccccccCeecccc
Q 043298 228 RGFHRFSSLGHLKIGGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLEHLSSSIVDLQNLTSLGLYN 299 (357)
Q Consensus 228 ~~l~~~~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~ 299 (357)
..+..+++|+.|++++ +.+..+|... . ++|++|++++ +.++.+|. +..+++|++|++.+
T Consensus 247 ~~~~~l~~L~~L~Ls~--N~l~~ip~~~--------~-~~L~~L~Ls~-N~l~~~p~-~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 247 PSCDWPSQLNSLNLSF--TGLKQVPKGL--------P-AKLSVLDLSY-NRLDRNPS-PDELPQVGNLSLKG 305 (312)
T ss_dssp SCCCCCTTCCEEECTT--SCCSSCCSSC--------C-SEEEEEECCS-SCCCSCCC-TTTSCEEEEEECTT
T ss_pred hhhhhcCCCCEEECCC--CccChhhhhc--------c-CCceEEECCC-CCCCCChh-HhhCCCCCEEeccC
Confidence 1234456666666666 4455555533 2 5666666666 45555554 56666666666666
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.66 E-value=1.4e-15 Score=133.53 Aligned_cols=153 Identities=22% Similarity=0.221 Sum_probs=84.1
Q ss_pred cccccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCCCCCCcccceecccCCCcceEEEec
Q 043298 18 LPSSLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKYELPATLESLEVGNLPSSVKVLDVY 97 (357)
Q Consensus 18 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~l~~~L~~L~l~ 97 (357)
++++|++|+++++. ++.++.. .+..++ +|++|+++++ .++.+ +.. .+. .+++ |++|+++
T Consensus 26 l~~~l~~L~ls~n~-l~~~~~~------~~~~l~--~L~~L~l~~n-~l~~~-~~~-~~~--------~l~~-L~~L~L~ 84 (276)
T 2z62_A 26 LPFSTKNLDLSFNP-LRHLGSY------SFFSFP--ELQVLDLSRC-EIQTI-EDG-AYQ--------SLSH-LSTLILT 84 (276)
T ss_dssp SCTTCCEEECTTCC-CCEECTT------TTTTCT--TCSEEECTTC-CCCEE-CTT-TTT--------TCTT-CCEEECT
T ss_pred CCCCccEEECCCCc-ccccCHh------Hhcccc--CCcEEECCCC-cCCcc-CHH-Hcc--------CCcC-CCEEECC
Confidence 45667777777765 6666654 455566 7777777774 45555 332 111 2333 7777777
Q ss_pred CCCCchhchh-ccCCCCcccEEEcccccCccccCc-cccCccccceeecccCCCccc--cCCCCcCcccccEEEeecCCC
Q 043298 98 GCPKLESIAE-RLDNNTSLETISIYNCENLKILPS-GLHKLHQLREIWIRECGNLVS--FPEGGLPCAKLRRLGIYDCER 173 (357)
Q Consensus 98 ~c~~~~~~~~-~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~~~~l~~--~~~~~~~l~~L~~L~l~~~~~ 173 (357)
+ +.++.++. ....+.+|++|++++ +.+..++. .+..+++|+.|++++|. +.. +|..+..+++|++|++++|..
T Consensus 85 ~-n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~l 161 (276)
T 2z62_A 85 G-NPIQSLALGAFSGLSSLQKLVAVE-TNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKI 161 (276)
T ss_dssp T-CCCCEECTTTTTTCTTCCEEECTT-SCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred C-CccCccChhhhcCCccccEEECCC-CCccccCchhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCCCC
Confidence 6 44555442 233445577777766 44554433 45666677777776643 333 445555666666666666543
Q ss_pred cccccccccCCCCCc----eEEecC
Q 043298 174 LEALPKGLHNLSSLQ----ELTIGG 194 (357)
Q Consensus 174 ~~~~~~~~~~l~~L~----~L~l~~ 194 (357)
....+..+..+++|+ ++++++
T Consensus 162 ~~~~~~~~~~l~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 162 QSIYCTDLRVLHQMPLLNLSLDLSL 186 (276)
T ss_dssp CEECGGGGHHHHTCTTCCEEEECCS
T ss_pred CcCCHHHhhhhhhccccceeeecCC
Confidence 333333444444444 444444
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.66 E-value=3.7e-15 Score=131.81 Aligned_cols=193 Identities=17% Similarity=0.112 Sum_probs=142.4
Q ss_pred cccccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCCCCCCcccceecccCCCcceEEEec
Q 043298 18 LPSSLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKYELPATLESLEVGNLPSSVKVLDVY 97 (357)
Q Consensus 18 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~l~~~L~~L~l~ 97 (357)
-++++++++++++. ++.+|.. +. + ++++|++++ +.++.+ +.. . +..+++ |++|+++
T Consensus 8 ~l~~l~~l~~~~~~-l~~ip~~------~~---~--~l~~L~L~~-N~l~~~-~~~-~--------~~~l~~-L~~L~L~ 63 (290)
T 1p9a_G 8 KVASHLEVNCDKRN-LTALPPD------LP---K--DTTILHLSE-NLLYTF-SLA-T--------LMPYTR-LTQLNLD 63 (290)
T ss_dssp CSTTCCEEECTTSC-CSSCCSC------CC---T--TCCEEECTT-SCCSEE-EGG-G--------GTTCTT-CCEEECT
T ss_pred ccCCccEEECCCCC-CCcCCCC------CC---C--CCCEEEcCC-CcCCcc-CHH-H--------hhcCCC-CCEEECC
Confidence 46788999998866 8888865 32 4 799999988 456665 322 1 224455 8888998
Q ss_pred CCCCchhchhccCCCCcccEEEcccccCccccCccccCccccceeecccCCCccccC-CCCcCcccccEEEeecCCCccc
Q 043298 98 GCPKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSFP-EGGLPCAKLRRLGIYDCERLEA 176 (357)
Q Consensus 98 ~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~ 176 (357)
+ +.++.++... .+.+|++|++++ +.++.+|..+..+++|+.|++++| .++.++ ..+..+++|+.|++++|.....
T Consensus 64 ~-n~l~~~~~~~-~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~~ 139 (290)
T 1p9a_G 64 R-AELTKLQVDG-TLPVLGTLDLSH-NQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKTL 139 (290)
T ss_dssp T-SCCCEEECCS-CCTTCCEEECCS-SCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCCCC
T ss_pred C-CccCcccCCC-CCCcCCEEECCC-CcCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCCcc
Confidence 8 5777776653 566699999988 788888888888899999999884 566666 4577788999999988654433
Q ss_pred ccccccCCCCCceEEecC-ccCCccCC--CCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeec
Q 043298 177 LPKGLHNLSSLQELTIGG-ELPSLEED--GLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGG 243 (357)
Q Consensus 177 ~~~~~~~l~~L~~L~l~~-~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~ 243 (357)
.+..+..+++|+.|++++ .++.++.. ..+++|+.|++++ +.++.++. .+...++|+.+++++
T Consensus 140 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~ip~----~~~~~~~L~~l~L~~ 204 (290)
T 1p9a_G 140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE-NSLYTIPK----GFFGSHLLPFAFLHG 204 (290)
T ss_dssp CTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCS-SCCCCCCT----TTTTTCCCSEEECCS
T ss_pred ChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCC-CcCCccCh----hhcccccCCeEEeCC
Confidence 334567888999999988 78877763 4478899999988 45666663 356667889999887
No 77
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.65 E-value=1.6e-15 Score=135.44 Aligned_cols=195 Identities=17% Similarity=0.229 Sum_probs=154.2
Q ss_pred cCCCcceEEEecCCCCchhchhccCCCCcccEEEcccccCccccCccccCccccceeecccCCCccccCCCCcCcccccE
Q 043298 86 NLPSSVKVLDVYGCPKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSFPEGGLPCAKLRR 165 (357)
Q Consensus 86 ~l~~~L~~L~l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~ 165 (357)
.+++ |++|++++| .++.++... .+.+|++|++++ +.+..++. +..+++|+.|++++|. +..++ .+..+++|++
T Consensus 39 ~l~~-L~~L~l~~~-~i~~l~~~~-~l~~L~~L~L~~-n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~ 111 (308)
T 1h6u_A 39 DLDG-ITTLSAFGT-GVTTIEGVQ-YLNNLIGLELKD-NQITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKT 111 (308)
T ss_dssp HHHT-CCEEECTTS-CCCCCTTGG-GCTTCCEEECCS-SCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCE
T ss_pred HcCC-cCEEEeeCC-CccCchhhh-ccCCCCEEEccC-CcCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCE
Confidence 4566 999999994 677776433 566799999999 57888776 8899999999999964 66665 4677899999
Q ss_pred EEeecCCCcccccccccCCCCCceEEecC-ccCCccCCCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeecC
Q 043298 166 LGIYDCERLEALPKGLHNLSSLQELTIGG-ELPSLEEDGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGC 244 (357)
Q Consensus 166 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~ 244 (357)
|++++|. ++.++ .+..+++|++|++++ .++.++....+++|+.|++++| .++.++ .+..+++|+.|++++
T Consensus 112 L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n-~l~~~~-----~l~~l~~L~~L~l~~- 182 (308)
T 1h6u_A 112 LDLTSTQ-ITDVT-PLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNA-QVSDLT-----PLANLSKLTTLKADD- 182 (308)
T ss_dssp EECTTSC-CCCCG-GGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSS-CCCCCG-----GGTTCTTCCEEECCS-
T ss_pred EECCCCC-CCCch-hhcCCCCCCEEECCCCccCcCccccCCCCccEEEccCC-cCCCCh-----hhcCCCCCCEEECCC-
Confidence 9999865 55555 488999999999999 7777776777899999999995 566555 258889999999999
Q ss_pred CCCCCcCccccccccCCCCCCCCccEEEcCccccCcccccccccccccCeeccccCCCCcccCC
Q 043298 245 DDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLEHLSSSIVDLQNLTSLGLYNCPKLKYFPE 308 (357)
Q Consensus 245 c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~ 308 (357)
+.+..++.. ..+++|++|++++ +.+..++ .+..+++|+.|++.++ .++..+.
T Consensus 183 -n~l~~~~~l--------~~l~~L~~L~L~~-N~l~~~~-~l~~l~~L~~L~l~~N-~i~~~~~ 234 (308)
T 1h6u_A 183 -NKISDISPL--------ASLPNLIEVHLKN-NQISDVS-PLANTSNLFIVTLTNQ-TITNQPV 234 (308)
T ss_dssp -SCCCCCGGG--------GGCTTCCEEECTT-SCCCBCG-GGTTCTTCCEEEEEEE-EEECCCE
T ss_pred -CccCcChhh--------cCCCCCCEEEccC-CccCccc-cccCCCCCCEEEccCC-eeecCCe
Confidence 566666652 3778999999999 4677776 3788999999999984 4555444
No 78
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.65 E-value=7.1e-16 Score=137.68 Aligned_cols=168 Identities=14% Similarity=0.187 Sum_probs=93.2
Q ss_pred ceEEEecCCCCchhchhccCCCCcccEEEcccccCccccCccccCccccceeecccCCCccccCCCCcCcccccEEEeec
Q 043298 91 VKVLDVYGCPKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSFPEGGLPCAKLRRLGIYD 170 (357)
Q Consensus 91 L~~L~l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~ 170 (357)
|++|++++ +.++.++. ...+.+|++|++++ +.++.++ .+..+++|+.|++++| .+..++. +..+++|++|++++
T Consensus 65 L~~L~L~~-n~i~~~~~-~~~l~~L~~L~L~~-n~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~ 138 (308)
T 1h6u_A 65 LIGLELKD-NQITDLAP-LKNLTKITELELSG-NPLKNVS-AIAGLQSIKTLDLTST-QITDVTP-LAGLSNLQVLYLDL 138 (308)
T ss_dssp CCEEECCS-SCCCCCGG-GTTCCSCCEEECCS-CCCSCCG-GGTTCTTCCEEECTTS-CCCCCGG-GTTCTTCCEEECCS
T ss_pred CCEEEccC-CcCCCChh-HccCCCCCEEEccC-CcCCCch-hhcCCCCCCEEECCCC-CCCCchh-hcCCCCCCEEECCC
Confidence 66666665 34555444 32444466666665 3455543 4555666666666653 3344432 44556666666666
Q ss_pred CCCcccccccccCCCCCceEEecC-ccCCccCCCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeecCCCCCC
Q 043298 171 CERLEALPKGLHNLSSLQELTIGG-ELPSLEEDGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDMV 249 (357)
Q Consensus 171 ~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~ 249 (357)
|. +..++. +..+++|++|++++ .++.++....+++|+.|++++| .++.+++ +..+++|++|++++ +.+.
T Consensus 139 n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n-~l~~~~~-----l~~l~~L~~L~L~~--N~l~ 208 (308)
T 1h6u_A 139 NQ-ITNISP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDN-KISDISP-----LASLPNLIEVHLKN--NQIS 208 (308)
T ss_dssp SC-CCCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCCGG-----GGGCTTCCEEECTT--SCCC
T ss_pred Cc-cCcCcc-ccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCC-ccCcChh-----hcCCCCCCEEEccC--CccC
Confidence 43 333332 55666666666666 5555554555566777777663 3444442 35667777777777 3455
Q ss_pred cCccccccccCCCCCCCCccEEEcCccccCcccc
Q 043298 250 SFPLEDKRLGTALPLPASLTSLWIEDFPNLEHLS 283 (357)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~ 283 (357)
.++. . ..+++|+.|+++++ .+...|
T Consensus 209 ~~~~-l-------~~l~~L~~L~l~~N-~i~~~~ 233 (308)
T 1h6u_A 209 DVSP-L-------ANTSNLFIVTLTNQ-TITNQP 233 (308)
T ss_dssp BCGG-G-------TTCTTCCEEEEEEE-EEECCC
T ss_pred cccc-c-------cCCCCCCEEEccCC-eeecCC
Confidence 5443 2 35667777777773 344444
No 79
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.62 E-value=3.6e-18 Score=161.07 Aligned_cols=210 Identities=21% Similarity=0.216 Sum_probs=102.0
Q ss_pred ccccceeeccccccccc-----ccccccccccCCCCCCcCCccEEEEecCCCccccccCC--CCCC----cccceecc--
Q 043298 19 PSSLKNLQIRDCYNIRT-----LTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKY--ELPA----TLESLEVG-- 85 (357)
Q Consensus 19 ~~~L~~L~l~~~~~l~~-----~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~--~~~~----~L~~L~l~-- 85 (357)
+++|++|++++|. +.. ++.. +..++ +|++|+++++ .+++..+.. ..+. +|++|+++
T Consensus 27 ~~~L~~L~L~~~~-l~~~~~~~l~~~-------l~~~~--~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~L~~n 95 (461)
T 1z7x_W 27 LQQCQVVRLDDCG-LTEARCKDISSA-------LRVNP--ALAELNLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQNC 95 (461)
T ss_dssp HTTCSEEEEESSC-CCHHHHHHHHHH-------HHTCT--TCCEEECTTC-CCHHHHHHHHHHTTCSTTCCCCEEECTTS
T ss_pred cCCccEEEccCCC-CCHHHHHHHHHH-------HHhCC--CcCEEeCCCC-cCChHHHHHHHHHHhhCCCceeEEEccCC
Confidence 5677777777766 442 2221 23444 6777777763 343320100 1122 46666655
Q ss_pred ---------------cCCCcceEEEecCCCCchhc-----hhcc-CCCCcccEEEcccccCccc-----cCccccCcccc
Q 043298 86 ---------------NLPSSVKVLDVYGCPKLESI-----AERL-DNNTSLETISIYNCENLKI-----LPSGLHKLHQL 139 (357)
Q Consensus 86 ---------------~l~~~L~~L~l~~c~~~~~~-----~~~~-~~~~~L~~L~l~~c~~l~~-----l~~~~~~l~~L 139 (357)
.+++ |++|++++| .++.. .... ....+|++|++++| .++. ++..+..+++|
T Consensus 96 ~i~~~~~~~l~~~l~~~~~-L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L 172 (461)
T 1z7x_W 96 CLTGAGCGVLSSTLRTLPT-LQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKPDF 172 (461)
T ss_dssp CCBGGGHHHHHHHTTSCTT-CCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCTTC
T ss_pred CCCHHHHHHHHHHHccCCc-eeEEECCCC-cCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHHHHHHhhCCCC
Confidence 4556 777777774 34422 1111 11234777777764 3432 23344456677
Q ss_pred ceeecccCCCccccCCCCc-----CcccccEEEeecCCCcc----cccccccCCCCCceEEecC-ccCC-----ccC--C
Q 043298 140 REIWIRECGNLVSFPEGGL-----PCAKLRRLGIYDCERLE----ALPKGLHNLSSLQELTIGG-ELPS-----LEE--D 202 (357)
Q Consensus 140 ~~L~l~~~~~l~~~~~~~~-----~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~-~~~~-----~~~--~ 202 (357)
++|++++|......+..+. ..++|++|++++|.... .++..+..+++|++|++++ .++. +.. .
T Consensus 173 ~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~ 252 (461)
T 1z7x_W 173 KELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLL 252 (461)
T ss_dssp CEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred CEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHh
Confidence 7777776542211111111 13467777776654332 1344555666777777666 3221 111 1
Q ss_pred CCCCccceEEecCCcchhhhhhh-cccccCCCCCcceEEeec
Q 043298 203 GLPTNLHSLDIWGNMEIWKSMIE-RGRGFHRFSSLGHLKIGG 243 (357)
Q Consensus 203 ~~~~~L~~L~l~~~~~l~~~~~~-~~~~l~~~~~L~~L~l~~ 243 (357)
..+++|++|++++| .++..... ....+..+++|++|++++
T Consensus 253 ~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 293 (461)
T 1z7x_W 253 HPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAG 293 (461)
T ss_dssp STTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred cCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCC
Confidence 12456666666665 33331100 001234456666666666
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.62 E-value=1.1e-15 Score=134.00 Aligned_cols=195 Identities=21% Similarity=0.274 Sum_probs=114.9
Q ss_pred cccccccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCCCCCCcccceecccCCCcceEEE
Q 043298 16 VQLPSSLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKYELPATLESLEVGNLPSSVKVLD 95 (357)
Q Consensus 16 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~l~~~L~~L~ 95 (357)
...+..+..+++.+.. +...... ..+. +|+.|++.++ .++.+ +. +..+++ |++|+
T Consensus 15 ~~~~~~l~~l~l~~~~-~~~~~~~--------~~l~--~L~~L~l~~~-~i~~~-~~-----------l~~l~~-L~~L~ 69 (272)
T 3rfs_A 15 DDAFAETIKANLKKKS-VTDAVTQ--------NELN--SIDQIIANNS-DIKSV-QG-----------IQYLPN-VRYLA 69 (272)
T ss_dssp SHHHHHHHHHHHTCSC-TTSEECH--------HHHT--TCCEEECTTS-CCCCC-TT-----------GGGCTT-CCEEE
T ss_pred CchHHHHHHHHhcCcc-ccccccc--------cccc--ceeeeeeCCC-Ccccc-cc-----------cccCCC-CcEEE
Confidence 3345556666666554 3332221 3444 7888888774 35444 21 223455 88888
Q ss_pred ecCCCCchhchhccCCCCcccEEEcccccCccccCcc-ccCccccceeecccCCCccccCC-CCcCcccccEEEeecCCC
Q 043298 96 VYGCPKLESIAERLDNNTSLETISIYNCENLKILPSG-LHKLHQLREIWIRECGNLVSFPE-GGLPCAKLRRLGIYDCER 173 (357)
Q Consensus 96 l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~ 173 (357)
+++ +.++.++.. +.+.+|++|++++ +.++.++.. +..+++|++|++++| .+..++. .+..+++|+.|++++|..
T Consensus 70 l~~-n~l~~~~~l-~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l 145 (272)
T 3rfs_A 70 LGG-NKLHDISAL-KELTNLTYLILTG-NQLQSLPNGVFDKLTNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHNQL 145 (272)
T ss_dssp CTT-SCCCCCGGG-TTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCC-CCCCCchhh-cCCCCCCEEECCC-CccCccChhHhcCCcCCCEEECCCC-cCCccCHHHhccCCCCCEEECCCCcc
Confidence 887 456665533 3455688888877 456665543 567778888888775 3445543 356677788888877543
Q ss_pred cccccccccCCCCCceEEecC-ccCCccC--CCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeec
Q 043298 174 LEALPKGLHNLSSLQELTIGG-ELPSLEE--DGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGG 243 (357)
Q Consensus 174 ~~~~~~~~~~l~~L~~L~l~~-~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~ 243 (357)
....+..++.+++|++|++++ .++.++. ...+++|+.|++++| .+...++. .+..+++|+.|++++
T Consensus 146 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~---~~~~l~~L~~L~l~~ 214 (272)
T 3rfs_A 146 QSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN-QLKSVPDG---VFDRLTSLQYIWLHD 214 (272)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTT---TTTTCTTCCEEECCS
T ss_pred CccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC-cCCccCHH---HHhCCcCCCEEEccC
Confidence 332233456777777777777 5555554 334566666666663 34444432 355666666666666
No 81
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.61 E-value=3.2e-17 Score=159.40 Aligned_cols=34 Identities=15% Similarity=0.076 Sum_probs=16.0
Q ss_pred cCCCcceEEEecCCCCchhchhccCCCCcccEEEcc
Q 043298 86 NLPSSVKVLDVYGCPKLESIAERLDNNTSLETISIY 121 (357)
Q Consensus 86 ~l~~~L~~L~l~~c~~~~~~~~~~~~~~~L~~L~l~ 121 (357)
.+++ |++|++++| .+..++.......+|++|+++
T Consensus 218 ~~~~-L~~L~L~~~-~~~~l~~~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 218 NCRS-LVSVKVGDF-EILELVGFFKAAANLEEFCGG 251 (592)
T ss_dssp HCTT-CCEEECSSC-BGGGGHHHHHHCTTCCEEEEC
T ss_pred hCCC-CcEEeccCc-cHHHHHHHHhhhhHHHhhccc
Confidence 4455 666666664 333333332223334444443
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.60 E-value=4.6e-15 Score=132.53 Aligned_cols=222 Identities=14% Similarity=0.072 Sum_probs=146.7
Q ss_pred ceEEEecCCCC----chhchhccCCCCcccEEEcccccCccccCccc--cCccccceeecccCCCccccC----CCCcCc
Q 043298 91 VKVLDVYGCPK----LESIAERLDNNTSLETISIYNCENLKILPSGL--HKLHQLREIWIRECGNLVSFP----EGGLPC 160 (357)
Q Consensus 91 L~~L~l~~c~~----~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~--~~l~~L~~L~l~~~~~l~~~~----~~~~~l 160 (357)
++.+.+..+.. +..+.... ...+|++|++++|.-....|..+ ..+++|++|++++|......+ ..+..+
T Consensus 66 l~~l~l~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 66 VRRLTVGAAQVPAQLLVGALRVL-AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCEEEECSCCCBHHHHHHHHHHH-HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred eeEEEEeCCcCCHHHHHHHHHhc-ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 56677776432 11222222 23448899998854334556665 788899999998865433332 122357
Q ss_pred ccccEEEeecCCCcccccccccCCCCCceEEecC-ccCC---ccC---CCCCCccceEEecCCcchhhhhhhcccccCCC
Q 043298 161 AKLRRLGIYDCERLEALPKGLHNLSSLQELTIGG-ELPS---LEE---DGLPTNLHSLDIWGNMEIWKSMIERGRGFHRF 233 (357)
Q Consensus 161 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~---~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~ 233 (357)
++|++|++++|......+..++.+++|++|++++ .+.. ++. ...+++|++|++++| .++.++....+.+..+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcC
Confidence 8899999998776555556888899999999988 4332 221 245688999999985 4443332100124677
Q ss_pred CCcceEEeecCCCCCCcC-ccccccccCCCCCCCCccEEEcCccccCcccccccccccccCeeccccCCCCcccCCCCCc
Q 043298 234 SSLGHLKIGGCDDDMVSF-PLEDKRLGTALPLPASLTSLWIEDFPNLEHLSSSIVDLQNLTSLGLYNCPKLKYFPEKGLP 312 (357)
Q Consensus 234 ~~L~~L~l~~~c~~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~ 312 (357)
++|++|++++ +.+... |...+ .+..+++|++|++++ +.++.+|..+ +++|++|++++ ++++.+|....+
T Consensus 224 ~~L~~L~Ls~--N~l~~~~p~~~~----~~~~~~~L~~L~Ls~-N~l~~lp~~~--~~~L~~L~Ls~-N~l~~~~~~~~l 293 (310)
T 4glp_A 224 VQPHSLDLSH--NSLRATVNPSAP----RCMWSSALNSLNLSF-AGLEQVPKGL--PAKLRVLDLSS-NRLNRAPQPDEL 293 (310)
T ss_dssp CCCSSEECTT--SCCCCCCCSCCS----SCCCCTTCCCEECCS-SCCCSCCSCC--CSCCSCEECCS-CCCCSCCCTTSC
T ss_pred CCCCEEECCC--CCCCccchhhHH----hccCcCcCCEEECCC-CCCCchhhhh--cCCCCEEECCC-CcCCCCchhhhC
Confidence 8999999999 555555 43331 012247999999998 5778888754 37999999998 578777665557
Q ss_pred cCCceEEecCCh
Q 043298 313 SSLLLLWIEGCP 324 (357)
Q Consensus 313 ~~L~~L~i~~c~ 324 (357)
++|+.|++++++
T Consensus 294 ~~L~~L~L~~N~ 305 (310)
T 4glp_A 294 PEVDNLTLDGNP 305 (310)
T ss_dssp CCCSCEECSSTT
T ss_pred CCccEEECcCCC
Confidence 899999998753
No 83
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.58 E-value=2.7e-17 Score=159.93 Aligned_cols=59 Identities=14% Similarity=0.210 Sum_probs=29.9
Q ss_pred CCCccEEEcCccccCcc-ccccc-ccccccCeeccccCCCCcccCC---CCCccCCceEEecCChh
Q 043298 265 PASLTSLWIEDFPNLEH-LSSSI-VDLQNLTSLGLYNCPKLKYFPE---KGLPSSLLLLWIEGCPL 325 (357)
Q Consensus 265 ~~~L~~L~l~~c~~l~~-i~~~~-~~~~~L~~L~l~~c~~l~~l~~---~~~~~~L~~L~i~~c~~ 325 (357)
+++|+.|++++|. +.. ....+ ..+++|++|++++|.. +.... ...+++|+.|++++|+.
T Consensus 455 ~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 455 AKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred chhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 3455555555543 221 11111 4467777777777643 22110 11246777777777764
No 84
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.58 E-value=2.2e-17 Score=155.62 Aligned_cols=236 Identities=17% Similarity=0.128 Sum_probs=131.9
Q ss_pred ccccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCcccc----ccCC-CCCCcccceecc--------
Q 043298 19 PSSLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCI----FSKY-ELPATLESLEVG-------- 85 (357)
Q Consensus 19 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~----~~~~-~~~~~L~~L~l~-------- 85 (357)
+++|++|+++++. +...+... ++..++ +|++|++++|. ++.. ++.. ..+++|+.|+++
T Consensus 2 ~~~l~~L~Ls~~~-l~~~~~~~-----~~~~~~--~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 72 (461)
T 1z7x_W 2 SLDIQSLDIQCEE-LSDARWAE-----LLPLLQ--QCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVG 72 (461)
T ss_dssp CEEEEEEEEESCC-CCHHHHHH-----HHHHHT--TCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHH
T ss_pred Cccceehhhhhcc-cCchhHHH-----HHhhcC--CccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHH
Confidence 5789999998876 65544321 345666 99999999975 5521 0222 334677777776
Q ss_pred ------cCC----CcceEEEecCCCCch-----hchhccCCCCcccEEEcccccCcccc-Cc----c-ccCccccceeec
Q 043298 86 ------NLP----SSVKVLDVYGCPKLE-----SIAERLDNNTSLETISIYNCENLKIL-PS----G-LHKLHQLREIWI 144 (357)
Q Consensus 86 ------~l~----~~L~~L~l~~c~~~~-----~~~~~~~~~~~L~~L~l~~c~~l~~l-~~----~-~~~l~~L~~L~l 144 (357)
.++ + |++|++++| .++ .++.....+++|++|+++++ .+... +. . ....++|++|++
T Consensus 73 ~~~l~~~l~~~~~~-L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L 149 (461)
T 1z7x_W 73 VHCVLQGLQTPSCK-IQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQL 149 (461)
T ss_dssp HHHHHHTTCSTTCC-CCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred HHHHHHHHhhCCCc-eeEEEccCC-CCCHHHHHHHHHHHccCCceeEEECCCC-cCchHHHHHHHHHHhcCCCcceEEEC
Confidence 233 5 777777775 344 33444444556777777773 34321 11 1 112456777777
Q ss_pred ccCCCcc----ccCCCCcCcccccEEEeecCCCccccccccc-----CCCCCceEEecC-ccCC-----ccC-CCCCCcc
Q 043298 145 RECGNLV----SFPEGGLPCAKLRRLGIYDCERLEALPKGLH-----NLSSLQELTIGG-ELPS-----LEE-DGLPTNL 208 (357)
Q Consensus 145 ~~~~~l~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~-~~~~-----~~~-~~~~~~L 208 (357)
++|.... .++..+..+++|++|++++|......+..+. ..++|++|++++ .++. ++. ...+++|
T Consensus 150 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 229 (461)
T 1z7x_W 150 EYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASL 229 (461)
T ss_dssp TTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTC
T ss_pred CCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCc
Confidence 7754222 1233344457788888877653222222221 345788888877 4443 221 2335788
Q ss_pred ceEEecCCcchhhhhhh--cccccCCCCCcceEEeecCCCCCCc-----CccccccccCCCCCCCCccEEEcCcc
Q 043298 209 HSLDIWGNMEIWKSMIE--RGRGFHRFSSLGHLKIGGCDDDMVS-----FPLEDKRLGTALPLPASLTSLWIEDF 276 (357)
Q Consensus 209 ~~L~l~~~~~l~~~~~~--~~~~l~~~~~L~~L~l~~~c~~l~~-----~~~~~~~~~~~~~~~~~L~~L~l~~c 276 (357)
++|++++|. +.+.... .......+++|++|++++ | .+.. ++... ..+++|++|+++++
T Consensus 230 ~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~-n-~l~~~~~~~l~~~l-------~~~~~L~~L~Ls~n 294 (461)
T 1z7x_W 230 RELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWE-C-GITAKGCGDLCRVL-------RAKESLKELSLAGN 294 (461)
T ss_dssp CEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTT-S-CCCHHHHHHHHHHH-------HHCTTCCEEECTTC
T ss_pred cEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECcC-C-CCCHHHHHHHHHHH-------hhCCCcceEECCCC
Confidence 888888863 4432210 001234577888888888 4 4443 22222 23456666666663
No 85
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.57 E-value=5.1e-14 Score=123.32 Aligned_cols=190 Identities=18% Similarity=0.203 Sum_probs=132.1
Q ss_pred cCCCcceEEEecCCCCchhchhccCCCCcccEEEcccccCccccCccccCccccceeecccCCCccccCC-CCcCccccc
Q 043298 86 NLPSSVKVLDVYGCPKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSFPE-GGLPCAKLR 164 (357)
Q Consensus 86 ~l~~~L~~L~l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~ 164 (357)
.++. |++|++++ +.++.++... .+.+|++|++++ +.+..++ .+..+++|++|++++| .+..++. .+..+++|+
T Consensus 39 ~l~~-L~~L~l~~-~~i~~~~~l~-~l~~L~~L~l~~-n~l~~~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 39 ELNS-IDQIIANN-SDIKSVQGIQ-YLPNVRYLALGG-NKLHDIS-ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHTT-CCEEECTT-SCCCCCTTGG-GCTTCCEEECTT-SCCCCCG-GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCC
T ss_pred cccc-eeeeeeCC-CCcccccccc-cCCCCcEEECCC-CCCCCch-hhcCCCCCCEEECCCC-ccCccChhHhcCCcCCC
Confidence 4555 88999988 4566666543 456699999988 5676654 6778889999999885 4556554 457788999
Q ss_pred EEEeecCCCcccccccccCCCCCceEEecC-ccCCccC--CCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEe
Q 043298 165 RLGIYDCERLEALPKGLHNLSSLQELTIGG-ELPSLEE--DGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKI 241 (357)
Q Consensus 165 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l 241 (357)
+|++++|......+..++.+++|++|++++ .++.++. ...+++|+.|++++| .++.+++. .+..+++|+.|++
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~---~~~~l~~L~~L~L 188 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEG---VFDKLTQLKDLRL 188 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT---TTTTCTTCCEEEC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCC-CcCccCHH---HhcCCccCCEEEC
Confidence 999988664444444578888899999888 7776665 345788888888885 45555542 4677888888888
Q ss_pred ecCCCCCCcCccccccccCCCCCCCCccEEEcCccccCcccccccccccccCeeccccC
Q 043298 242 GGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLEHLSSSIVDLQNLTSLGLYNC 300 (357)
Q Consensus 242 ~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c 300 (357)
++ +.+..++... +..+++|+.|++++++.. ..+++++.+++..+
T Consensus 189 ~~--N~l~~~~~~~------~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n 232 (272)
T 3rfs_A 189 YQ--NQLKSVPDGV------FDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWIN 232 (272)
T ss_dssp CS--SCCSCCCTTT------TTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHH
T ss_pred CC--CcCCccCHHH------HhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHH
Confidence 88 4555555432 246778888888875321 33556666666553
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.57 E-value=2.3e-16 Score=142.42 Aligned_cols=103 Identities=17% Similarity=0.293 Sum_probs=54.5
Q ss_pred ceEEEecCCCCchh--chhccCCCCcccEEEcccccCccccCccccCccccceeecccCCCccc--cCCCCcCcccccEE
Q 043298 91 VKVLDVYGCPKLES--IAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVS--FPEGGLPCAKLRRL 166 (357)
Q Consensus 91 L~~L~l~~c~~~~~--~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~l~~L~~L 166 (357)
|++|++++|. ++. ++.....+++|++|++++|.--...+..+..+++|++|++++|..++. ++..+..+++|++|
T Consensus 95 L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L 173 (336)
T 2ast_B 95 VQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL 173 (336)
T ss_dssp CCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred CCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEE
Confidence 6666666643 332 444344445566776666432223444555566666666666544432 33334455666666
Q ss_pred EeecCCCccc--ccccccCCC-CCceEEecC
Q 043298 167 GIYDCERLEA--LPKGLHNLS-SLQELTIGG 194 (357)
Q Consensus 167 ~l~~~~~~~~--~~~~~~~l~-~L~~L~l~~ 194 (357)
++++|..++. ++..+..++ +|++|++++
T Consensus 174 ~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 174 NLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp ECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred cCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 6666533332 334445555 555555554
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.57 E-value=8.1e-16 Score=138.86 Aligned_cols=108 Identities=16% Similarity=0.255 Sum_probs=78.9
Q ss_pred cCCCcceEEEecCCCCchhchhccCCCCcccEEEcccccCccc--cCccccCccccceeecccCCCccc--cCCCCcCcc
Q 043298 86 NLPSSVKVLDVYGCPKLESIAERLDNNTSLETISIYNCENLKI--LPSGLHKLHQLREIWIRECGNLVS--FPEGGLPCA 161 (357)
Q Consensus 86 ~l~~~L~~L~l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~--l~~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~l~ 161 (357)
.+++ |++|++++|..-...+..++.+.+|++|++++|..++. ++..+..+++|++|++++|..++. ++..+..++
T Consensus 116 ~~~~-L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~ 194 (336)
T 2ast_B 116 QCSK-LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVS 194 (336)
T ss_dssp TBCC-CSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSC
T ss_pred hCCC-CCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcc
Confidence 5677 99999999753335555555567799999999867763 566678899999999999855553 455566788
Q ss_pred -cccEEEeecCC-Cc--ccccccccCCCCCceEEecC
Q 043298 162 -KLRRLGIYDCE-RL--EALPKGLHNLSSLQELTIGG 194 (357)
Q Consensus 162 -~L~~L~l~~~~-~~--~~~~~~~~~l~~L~~L~l~~ 194 (357)
+|++|++++|. .+ ..++..+..+++|++|++++
T Consensus 195 ~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~ 231 (336)
T 2ast_B 195 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSD 231 (336)
T ss_dssp TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTT
T ss_pred cCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCC
Confidence 99999999985 23 34455555666666666655
No 88
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.56 E-value=3.5e-17 Score=159.17 Aligned_cols=113 Identities=15% Similarity=0.103 Sum_probs=57.0
Q ss_pred CCccceEEecCCcchhhhhhhcccccCCCCCcceEEee-----cCCCCCCcCccccccccCCCCCCCCccEEEcCccccC
Q 043298 205 PTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIG-----GCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNL 279 (357)
Q Consensus 205 ~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~-----~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l 279 (357)
+++|+.|.+.. +.+++.... .....+++|+.|+++ + |..+...+...+ +...+..+++|+.|++++ .+
T Consensus 371 ~~~L~~L~~~~-~~l~~~~~~--~l~~~~~~L~~L~L~~~~~~~-~~~l~~~~~~~~-~~~l~~~~~~L~~L~L~~--~l 443 (594)
T 2p1m_B 371 CPKLESVLYFC-RQMTNAALI--TIARNRPNMTRFRLCIIEPKA-PDYLTLEPLDIG-FGAIVEHCKDLRRLSLSG--LL 443 (594)
T ss_dssp CTTCCEEEEEE-SCCCHHHHH--HHHHHCTTCCEEEEEESSTTC-CCTTTCCCTHHH-HHHHHHHCTTCCEEECCS--SC
T ss_pred chhHHHHHHhc-CCcCHHHHH--HHHhhCCCcceeEeecccCCC-cccccCCchhhH-HHHHHhhCCCccEEeecC--cc
Confidence 35555554432 334333322 112346677777777 4 555553332100 001112456777777765 33
Q ss_pred ccc-cccc-ccccccCeeccccCCCCcccCCC---CCccCCceEEecCChh
Q 043298 280 EHL-SSSI-VDLQNLTSLGLYNCPKLKYFPEK---GLPSSLLLLWIEGCPL 325 (357)
Q Consensus 280 ~~i-~~~~-~~~~~L~~L~l~~c~~l~~l~~~---~~~~~L~~L~i~~c~~ 325 (357)
... ...+ ..+++|++|++.+|. ++..... ..+++|++|++++|+.
T Consensus 444 ~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 444 TDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred cHHHHHHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 321 1122 236778888887764 4321110 1257899999999875
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.56 E-value=7.1e-14 Score=120.85 Aligned_cols=169 Identities=19% Similarity=0.236 Sum_probs=94.0
Q ss_pred ceEEEecCCCCchhchhccCCCCcccEEEcccccCccccC-ccccCccccceeecccCCCccccC-CCCcCcccccEEEe
Q 043298 91 VKVLDVYGCPKLESIAERLDNNTSLETISIYNCENLKILP-SGLHKLHQLREIWIRECGNLVSFP-EGGLPCAKLRRLGI 168 (357)
Q Consensus 91 L~~L~l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l 168 (357)
.+++++++ ..++.+|... +.+++.|++++ +.+..++ ..+..+++|++|++++| .+..++ ..+..+++|+.|++
T Consensus 16 ~~~l~~~~-~~l~~~p~~~--~~~l~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 16 KKEVDCQG-KSLDSVPSGI--PADTEKLDLQS-TGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GTEEECTT-CCCSSCCSCC--CTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CeEEecCC-CCccccCCCC--CCCCCEEEccC-CCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEEC
Confidence 45556665 4556665543 34466666666 4444443 34556666666666664 333333 23455666666666
Q ss_pred ecCCCcccccccccCCCCCceEEecC-ccCCccC--CCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeecCC
Q 043298 169 YDCERLEALPKGLHNLSSLQELTIGG-ELPSLEE--DGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCD 245 (357)
Q Consensus 169 ~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c 245 (357)
++|......+..+..+++|++|++++ .++.++. ...+++|++|++++| .++.+++. .+..+++|+.|++++
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~---~~~~l~~L~~L~L~~-- 164 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAG---AFDKLTNLQTLSLST-- 164 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT---TTTTCTTCCEEECCS--
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHH---HcCcCcCCCEEECCC--
Confidence 66443333334556666666666666 5555554 233566666666663 44444432 356666777777766
Q ss_pred CCCCcCccccccccCCCCCCCCccEEEcCcc
Q 043298 246 DDMVSFPLEDKRLGTALPLPASLTSLWIEDF 276 (357)
Q Consensus 246 ~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c 276 (357)
+.+..++... +..+++|+.|+++++
T Consensus 165 N~l~~~~~~~------~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 165 NQLQSVPHGA------FDRLGKLQTITLFGN 189 (251)
T ss_dssp SCCSCCCTTT------TTTCTTCCEEECCSC
T ss_pred CcCCccCHHH------HhCCCCCCEEEeeCC
Confidence 4455554322 235566777777663
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.56 E-value=9.6e-14 Score=120.03 Aligned_cols=171 Identities=19% Similarity=0.252 Sum_probs=126.2
Q ss_pred CcccEEEcccccCccccCccccCccccceeecccCCCccccC-CCCcCcccccEEEeecCCCcccccccccCCCCCceEE
Q 043298 113 TSLETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSFP-EGGLPCAKLRRLGIYDCERLEALPKGLHNLSSLQELT 191 (357)
Q Consensus 113 ~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 191 (357)
...+++++++ +.++.+|..+. ++++.|+++++. +..++ ..+..+++|++|++++|......+..+..+++|++|+
T Consensus 14 ~~~~~l~~~~-~~l~~~p~~~~--~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 14 EGKKEVDCQG-KSLDSVPSGIP--ADTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGGTEEECTT-CCCSSCCSCCC--TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCeEEecCC-CCccccCCCCC--CCCCEEEccCCC-cCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence 3477888888 78888887664 689999998854 45544 4677889999999998665554555688899999999
Q ss_pred ecC-ccCCccC--CCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeecCCCCCCcCccccccccCCCCCCCCc
Q 043298 192 IGG-ELPSLEE--DGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDMVSFPLEDKRLGTALPLPASL 268 (357)
Q Consensus 192 l~~-~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L 268 (357)
+++ .++.++. ...+++|++|++++| .++.+++. .+..+++|++|++++ +.+..++... +..+++|
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~---~~~~l~~L~~L~Ls~--N~l~~~~~~~------~~~l~~L 157 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSG---VFDRLTKLKELRLNT--NQLQSIPAGA------FDKLTNL 157 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT---TTTTCTTCCEEECCS--SCCCCCCTTT------TTTCTTC
T ss_pred CCCCcccccChhHhcccCCCCEEEcCCC-cCCCcChh---HhccCCcccEEECcC--CcCCccCHHH------cCcCcCC
Confidence 988 7777664 345788889998884 56655543 467788888888888 5666666532 2467888
Q ss_pred cEEEcCccccCccccc-ccccccccCeeccccC
Q 043298 269 TSLWIEDFPNLEHLSS-SIVDLQNLTSLGLYNC 300 (357)
Q Consensus 269 ~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l~~c 300 (357)
++|++++ +.+..++. .+..+++|++|++.++
T Consensus 158 ~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 158 QTLSLST-NQLQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp CEEECCS-SCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred CEEECCC-CcCCccCHHHHhCCCCCCEEEeeCC
Confidence 8888888 46666654 5677888888888874
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.55 E-value=1.1e-14 Score=130.17 Aligned_cols=199 Identities=17% Similarity=0.132 Sum_probs=138.9
Q ss_pred cCCCcceEEEecCCCCchhchhcc--CCCCcccEEEcccccCccc-cC----ccccCccccceeecccCCCccccCCCCc
Q 043298 86 NLPSSVKVLDVYGCPKLESIAERL--DNNTSLETISIYNCENLKI-LP----SGLHKLHQLREIWIRECGNLVSFPEGGL 158 (357)
Q Consensus 86 ~l~~~L~~L~l~~c~~~~~~~~~~--~~~~~L~~L~l~~c~~l~~-l~----~~~~~l~~L~~L~l~~~~~l~~~~~~~~ 158 (357)
.+++ |++|++++|......|... +...+|++|++++ +.+.. .+ ..+..+++|+.|++++|......+..+.
T Consensus 89 ~~~~-L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~-n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~ 166 (310)
T 4glp_A 89 AYSR-LKELTLEDLKITGTMPPLPLEATGLALSSLRLRN-VSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVR 166 (310)
T ss_dssp HHSC-CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEES-CCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCC
T ss_pred ccCc-eeEEEeeCCEeccchhhhhhhccCCCCCEEEeec-ccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhc
Confidence 3455 8999999854333445443 4566799999988 55553 22 2334688999999988654333345677
Q ss_pred CcccccEEEeecCCCccc--cc--ccccCCCCCceEEecC-ccCCccC-----CCCCCccceEEecCCcchhhhhhhccc
Q 043298 159 PCAKLRRLGIYDCERLEA--LP--KGLHNLSSLQELTIGG-ELPSLEE-----DGLPTNLHSLDIWGNMEIWKSMIERGR 228 (357)
Q Consensus 159 ~l~~L~~L~l~~~~~~~~--~~--~~~~~l~~L~~L~l~~-~~~~~~~-----~~~~~~L~~L~l~~~~~l~~~~~~~~~ 228 (357)
.+++|++|++++|+..+. ++ ..++.+++|++|++++ .++.++. ...+++|++|++++| .+....+.
T Consensus 167 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~p~--- 242 (310)
T 4glp_A 167 AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHN-SLRATVNP--- 242 (310)
T ss_dssp CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTS-CCCCCCCS---
T ss_pred cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCC-CCCccchh---
Confidence 889999999999775442 22 2347888999999988 7765543 234689999999985 45554221
Q ss_pred ccCCC---CCcceEEeecCCCCCCcCccccccccCCCCCCCCccEEEcCccccCcccccccccccccCeeccccCCCCc
Q 043298 229 GFHRF---SSLGHLKIGGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLEHLSSSIVDLQNLTSLGLYNCPKLK 304 (357)
Q Consensus 229 ~l~~~---~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~ 304 (357)
.+..+ ++|++|++++ +.+..+|... +++|++|++++ +.+..+|. +..+++|+.|++.++ .++
T Consensus 243 ~~~~~~~~~~L~~L~Ls~--N~l~~lp~~~---------~~~L~~L~Ls~-N~l~~~~~-~~~l~~L~~L~L~~N-~l~ 307 (310)
T 4glp_A 243 SAPRCMWSSALNSLNLSF--AGLEQVPKGL---------PAKLRVLDLSS-NRLNRAPQ-PDELPEVDNLTLDGN-PFL 307 (310)
T ss_dssp CCSSCCCCTTCCCEECCS--SCCCSCCSCC---------CSCCSCEECCS-CCCCSCCC-TTSCCCCSCEECSST-TTS
T ss_pred hHHhccCcCcCCEEECCC--CCCCchhhhh---------cCCCCEEECCC-CcCCCCch-hhhCCCccEEECcCC-CCC
Confidence 23344 7999999998 6677777643 37999999999 57777764 578899999999884 443
No 92
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.53 E-value=5e-15 Score=143.91 Aligned_cols=282 Identities=13% Similarity=0.067 Sum_probs=123.1
Q ss_pred ccccceeecccccccc-----cccccccccccCCCCCCcCCccEEEEecCCCccccccCC-CCCCcccceecc-------
Q 043298 19 PSSLKNLQIRDCYNIR-----TLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKY-ELPATLESLEVG------- 85 (357)
Q Consensus 19 ~~~L~~L~l~~~~~l~-----~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~-~~~~~L~~L~l~------- 85 (357)
+++|++|+++++. +. .++. ++..++ +|++|++.+|. +..+ +.. ..+++|+.|+++
T Consensus 191 ~~~L~~L~L~~n~-~~~~~~~~l~~-------~~~~~~--~L~~L~L~~~~-~~~l-~~~~~~~~~L~~L~l~~~~~~~~ 258 (592)
T 3ogk_B 191 NTSLEVLNFYMTE-FAKISPKDLET-------IARNCR--SLVSVKVGDFE-ILEL-VGFFKAAANLEEFCGGSLNEDIG 258 (592)
T ss_dssp CCCCCEEECTTCC-CSSCCHHHHHH-------HHHHCT--TCCEEECSSCB-GGGG-HHHHHHCTTCCEEEECBCCCCTT
T ss_pred CCCccEEEeeccC-CCccCHHHHHH-------HHhhCC--CCcEEeccCcc-HHHH-HHHHhhhhHHHhhcccccccccc
Confidence 5677777776655 32 1221 123344 66666666642 3333 222 233444444442
Q ss_pred ---------cCCCcceEEEecCCCCchhchhccCCCCcccEEEcccccCccc--cCccccCccccceeecccCCCccccC
Q 043298 86 ---------NLPSSVKVLDVYGCPKLESIAERLDNNTSLETISIYNCENLKI--LPSGLHKLHQLREIWIRECGNLVSFP 154 (357)
Q Consensus 86 ---------~l~~~L~~L~l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~--l~~~~~~l~~L~~L~l~~~~~l~~~~ 154 (357)
.+++ |+.|.+++ .....++.....+.+|++|++++|. +.. +...+..+++|+.|++.++..-..++
T Consensus 259 ~~~~~~~l~~~~~-L~~L~l~~-~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~ 335 (592)
T 3ogk_B 259 MPEKYMNLVFPRK-LCRLGLSY-MGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLE 335 (592)
T ss_dssp CTTSSSCCCCCTT-CCEEEETT-CCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHH
T ss_pred hHHHHHHhhcccc-ccccCccc-cchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHH
Confidence 3334 66666655 2333444433334456666666644 321 11223456666666665321111222
Q ss_pred CCCcCcccccEEEeec----------CCCcccc--cccccCCCCCceEEecC-ccCC--ccCC-CCCCccceEEecC---
Q 043298 155 EGGLPCAKLRRLGIYD----------CERLEAL--PKGLHNLSSLQELTIGG-ELPS--LEED-GLPTNLHSLDIWG--- 215 (357)
Q Consensus 155 ~~~~~l~~L~~L~l~~----------~~~~~~~--~~~~~~l~~L~~L~l~~-~~~~--~~~~-~~~~~L~~L~l~~--- 215 (357)
.....+++|++|++++ |+.++.. +..+..+++|++|++.. .++. +... ..+++|++|++++
T Consensus 336 ~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~ 415 (592)
T 3ogk_B 336 VLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDR 415 (592)
T ss_dssp HHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSC
T ss_pred HHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCC
Confidence 2223355666666663 4443321 11223456666666633 2211 1111 1145566666652
Q ss_pred Ccchhhhhhh--cccccCCCCCcceEEeecCCCC-CCcCc-cccccccCCCCCCCCccEEEcCccccCcc--cccccccc
Q 043298 216 NMEIWKSMIE--RGRGFHRFSSLGHLKIGGCDDD-MVSFP-LEDKRLGTALPLPASLTSLWIEDFPNLEH--LSSSIVDL 289 (357)
Q Consensus 216 ~~~l~~~~~~--~~~~l~~~~~L~~L~l~~~c~~-l~~~~-~~~~~~~~~~~~~~~L~~L~l~~c~~l~~--i~~~~~~~ 289 (357)
|+.+++.+.. ....+.++++|+.|+++. |.+ +.... ... ...+++|+.|++++|. +.. ++..+.++
T Consensus 416 ~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~-~~~~l~~~~~~~~------~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~ 487 (592)
T 3ogk_B 416 EERITDLPLDNGVRSLLIGCKKLRRFAFYL-RQGGLTDLGLSYI------GQYSPNVRWMLLGYVG-ESDEGLMEFSRGC 487 (592)
T ss_dssp CSCCSSCCCHHHHHHHHHHCTTCCEEEEEC-CGGGCCHHHHHHH------HHSCTTCCEEEECSCC-SSHHHHHHHHTCC
T ss_pred CccccCchHHHHHHHHHHhCCCCCEEEEec-CCCCccHHHHHHH------HHhCccceEeeccCCC-CCHHHHHHHHhcC
Confidence 3344431000 001234456666666655 432 11100 000 0134556666666542 322 23333455
Q ss_pred cccCeeccccCCCCcc--cCC-CCCccCCceEEecCCh
Q 043298 290 QNLTSLGLYNCPKLKY--FPE-KGLPSSLLLLWIEGCP 324 (357)
Q Consensus 290 ~~L~~L~l~~c~~l~~--l~~-~~~~~~L~~L~i~~c~ 324 (357)
++|++|++++|. ++. ++. ...+++|+.|++++|.
T Consensus 488 ~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 488 PNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp TTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred cccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 666666666654 322 111 0123556666666665
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.48 E-value=1.6e-13 Score=121.29 Aligned_cols=162 Identities=19% Similarity=0.269 Sum_probs=100.1
Q ss_pred CccEEEEecCCCccccccCCCCCCcccceecccCCCcceEEEecCCCCchhchhccCCCCcccEEEcccccCccccCccc
Q 043298 54 LLEELFVFNCDSLTCIFSKYELPATLESLEVGNLPSSVKVLDVYGCPKLESIAERLDNNTSLETISIYNCENLKILPSGL 133 (357)
Q Consensus 54 ~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~l~~~L~~L~l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~ 133 (357)
+|+.|+++++ .++.+ +. +..+++ |++|++++ +.++.++. ...+.+|++|++++ +.++.++ .+
T Consensus 47 ~L~~L~l~~~-~i~~~-~~-----------~~~l~~-L~~L~L~~-n~l~~~~~-l~~l~~L~~L~l~~-n~l~~~~-~l 108 (291)
T 1h6t_A 47 SIDQIIANNS-DIKSV-QG-----------IQYLPN-VTKLFLNG-NKLTDIKP-LANLKNLGWLFLDE-NKVKDLS-SL 108 (291)
T ss_dssp TCCEEECTTS-CCCCC-TT-----------GGGCTT-CCEEECCS-SCCCCCGG-GTTCTTCCEEECCS-SCCCCGG-GG
T ss_pred cccEEEccCC-CcccC-hh-----------HhcCCC-CCEEEccC-CccCCCcc-cccCCCCCEEECCC-CcCCCCh-hh
Confidence 6777777664 34444 21 113344 67777776 45555554 33455577777776 4565554 36
Q ss_pred cCccccceeecccCCCccccCCCCcCcccccEEEeecCCCcccccccccCCCCCceEEecC-ccCCccCCCCCCccceEE
Q 043298 134 HKLHQLREIWIRECGNLVSFPEGGLPCAKLRRLGIYDCERLEALPKGLHNLSSLQELTIGG-ELPSLEEDGLPTNLHSLD 212 (357)
Q Consensus 134 ~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~L~~L~ 212 (357)
..+++|+.|++++| .+..++ .+..+++|+.|++++|. +..+ ..++.+++|+.|++++ .++.++....+++|+.|+
T Consensus 109 ~~l~~L~~L~L~~n-~i~~~~-~l~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~ 184 (291)
T 1h6t_A 109 KDLKKLKSLSLEHN-GISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLY 184 (291)
T ss_dssp TTCTTCCEEECTTS-CCCCCG-GGGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEE
T ss_pred ccCCCCCEEECCCC-cCCCCh-hhcCCCCCCEEEccCCc-CCcc-hhhccCCCCCEEEccCCccccchhhcCCCccCEEE
Confidence 66777777777764 344442 34556677777777644 3333 4566777777777777 666655566667778888
Q ss_pred ecCCcchhhhhhhcccccCCCCCcceEEeec
Q 043298 213 IWGNMEIWKSMIERGRGFHRFSSLGHLKIGG 243 (357)
Q Consensus 213 l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~ 243 (357)
+++| .++.++ .+..+++|+.|++++
T Consensus 185 L~~N-~i~~l~-----~l~~l~~L~~L~l~~ 209 (291)
T 1h6t_A 185 LSKN-HISDLR-----ALAGLKNLDVLELFS 209 (291)
T ss_dssp CCSS-CCCBCG-----GGTTCTTCSEEEEEE
T ss_pred CCCC-cCCCCh-----hhccCCCCCEEECcC
Confidence 8774 455554 257778888888887
No 94
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.47 E-value=3.1e-13 Score=119.52 Aligned_cols=171 Identities=18% Similarity=0.266 Sum_probs=135.3
Q ss_pred CCcccEEEcccccCccccCccccCccccceeecccCCCccccCCCCcCcccccEEEeecCCCcccccccccCCCCCceEE
Q 043298 112 NTSLETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSFPEGGLPCAKLRRLGIYDCERLEALPKGLHNLSSLQELT 191 (357)
Q Consensus 112 ~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 191 (357)
+.+|+.|++++ +.++.++ .+..+++|+.|++++| .+..++. +..+++|+.|++++|. ++.++ .+..+++|++|+
T Consensus 45 l~~L~~L~l~~-~~i~~~~-~~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~ 118 (291)
T 1h6t_A 45 LNSIDQIIANN-SDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENK-VKDLS-SLKDLKKLKSLS 118 (291)
T ss_dssp HHTCCEEECTT-SCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCGG-GGTTCTTCCEEE
T ss_pred cCcccEEEccC-CCcccCh-hHhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCc-CCCCh-hhccCCCCCEEE
Confidence 45599999998 5777775 4788999999999985 5666655 7778999999999865 55554 588999999999
Q ss_pred ecC-ccCCccCCCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeecCCCCCCcCccccccccCCCCCCCCccE
Q 043298 192 IGG-ELPSLEEDGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDMVSFPLEDKRLGTALPLPASLTS 270 (357)
Q Consensus 192 l~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~ 270 (357)
+++ .++.++....+++|+.|++++| .++.+. .+..+++|+.|++++ +.+..++. . ..+++|+.
T Consensus 119 L~~n~i~~~~~l~~l~~L~~L~l~~n-~l~~~~-----~l~~l~~L~~L~L~~--N~l~~~~~-l-------~~l~~L~~ 182 (291)
T 1h6t_A 119 LEHNGISDINGLVHLPQLESLYLGNN-KITDIT-----VLSRLTKLDTLSLED--NQISDIVP-L-------AGLTKLQN 182 (291)
T ss_dssp CTTSCCCCCGGGGGCTTCCEEECCSS-CCCCCG-----GGGGCTTCSEEECCS--SCCCCCGG-G-------TTCTTCCE
T ss_pred CCCCcCCCChhhcCCCCCCEEEccCC-cCCcch-----hhccCCCCCEEEccC--Cccccchh-h-------cCCCccCE
Confidence 999 7777777777899999999985 455553 467889999999999 46666665 3 47889999
Q ss_pred EEcCccccCcccccccccccccCeeccccCCCCcccC
Q 043298 271 LWIEDFPNLEHLSSSIVDLQNLTSLGLYNCPKLKYFP 307 (357)
Q Consensus 271 L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~ 307 (357)
|++++ +.+..++. +..+++|+.|++.++ .+...+
T Consensus 183 L~L~~-N~i~~l~~-l~~l~~L~~L~l~~n-~i~~~~ 216 (291)
T 1h6t_A 183 LYLSK-NHISDLRA-LAGLKNLDVLELFSQ-ECLNKP 216 (291)
T ss_dssp EECCS-SCCCBCGG-GTTCTTCSEEEEEEE-EEECCC
T ss_pred EECCC-CcCCCChh-hccCCCCCEEECcCC-cccCCc
Confidence 99999 47788764 788999999999984 454433
No 95
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.47 E-value=1.7e-13 Score=113.95 Aligned_cols=100 Identities=9% Similarity=0.113 Sum_probs=44.1
Q ss_pred ceEEEecCCCCchhchhccCCCCcccEEEcccccCccccCccccCccccceeecccCCCccccCCCCcCcccccEEEeec
Q 043298 91 VKVLDVYGCPKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSFPEGGLPCAKLRRLGIYD 170 (357)
Q Consensus 91 L~~L~l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~ 170 (357)
|++|++++ +.++.++. ...+.+|++|++++| .++.++ .+..+++|++|++++|......+..+..+++|+.|++++
T Consensus 46 L~~L~l~~-n~i~~l~~-l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~ 121 (197)
T 4ezg_A 46 LTYITLAN-INVTDLTG-IEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121 (197)
T ss_dssp CCEEEEES-SCCSCCTT-GGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCS
T ss_pred ccEEeccC-CCccChHH-HhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecC
Confidence 55555554 33444442 223334555555543 333322 344455555555555332222334444455555555555
Q ss_pred CCCcccccccccCCCCCceEEecC
Q 043298 171 CERLEALPKGLHNLSSLQELTIGG 194 (357)
Q Consensus 171 ~~~~~~~~~~~~~l~~L~~L~l~~ 194 (357)
|......+..++.+++|++|++++
T Consensus 122 n~i~~~~~~~l~~l~~L~~L~L~~ 145 (197)
T 4ezg_A 122 SAHDDSILTKINTLPKVNSIDLSY 145 (197)
T ss_dssp SBCBGGGHHHHTTCSSCCEEECCS
T ss_pred CccCcHhHHHHhhCCCCCEEEccC
Confidence 443333334444444444444444
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.46 E-value=9e-13 Score=126.57 Aligned_cols=185 Identities=22% Similarity=0.279 Sum_probs=115.5
Q ss_pred CccEEEEecCCCccccccCCCCCCcccceecccCCCcceEEEecCCCCchhchhccCCCCcccEEEcccccCccccCccc
Q 043298 54 LLEELFVFNCDSLTCIFSKYELPATLESLEVGNLPSSVKVLDVYGCPKLESIAERLDNNTSLETISIYNCENLKILPSGL 133 (357)
Q Consensus 54 ~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~l~~~L~~L~l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~ 133 (357)
+++.|+++++ .++.+ |..- +++ |++|++++ +.++.+| +.+.+|+.|++++ +.++.+|. +
T Consensus 60 ~L~~L~Ls~n-~L~~l-p~~l------------~~~-L~~L~Ls~-N~l~~ip---~~l~~L~~L~Ls~-N~l~~ip~-l 118 (571)
T 3cvr_A 60 QFSELQLNRL-NLSSL-PDNL------------PPQ-ITVLEITQ-NALISLP---ELPASLEYLDACD-NRLSTLPE-L 118 (571)
T ss_dssp TCSEEECCSS-CCSCC-CSCC------------CTT-CSEEECCS-SCCSCCC---CCCTTCCEEECCS-SCCSCCCC-C
T ss_pred CccEEEeCCC-CCCcc-CHhH------------cCC-CCEEECcC-CCCcccc---cccCCCCEEEccC-CCCCCcch-h
Confidence 6778888773 46665 5431 123 77777877 5667777 2456688888877 56777776 5
Q ss_pred cCccccceeecccCCCccccCCCCcCcccccEEEeecCCCcccccccccCCCCCceEEecC-ccCCccCCCCCCccceEE
Q 043298 134 HKLHQLREIWIRECGNLVSFPEGGLPCAKLRRLGIYDCERLEALPKGLHNLSSLQELTIGG-ELPSLEEDGLPTNLHSLD 212 (357)
Q Consensus 134 ~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~L~~L~ 212 (357)
.. +|+.|++++| .+..+|. .+++|+.|++++|. ++.+|. .+++|++|++++ .++.+|. +.++|+.|+
T Consensus 119 ~~--~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~L~~lp~--l~~~L~~L~ 186 (571)
T 3cvr_A 119 PA--SLKHLDVDNN-QLTMLPE---LPALLEYINADNNQ-LTMLPE---LPTSLEVLSVRNNQLTFLPE--LPESLEALD 186 (571)
T ss_dssp CT--TCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSCCSCCCC--CCTTCCEEE
T ss_pred hc--CCCEEECCCC-cCCCCCC---cCccccEEeCCCCc-cCcCCC---cCCCcCEEECCCCCCCCcch--hhCCCCEEE
Confidence 44 7788888774 4555665 46678888887744 444554 456777787777 6666665 337777777
Q ss_pred ecCCcchhhhhhhcccccCCCCCc-------ceEEeecCCCCCCcCccccccccCCCCCCCCccEEEcCccccCcccccc
Q 043298 213 IWGNMEIWKSMIERGRGFHRFSSL-------GHLKIGGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLEHLSSS 285 (357)
Q Consensus 213 l~~~~~l~~~~~~~~~~l~~~~~L-------~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~ 285 (357)
+++| .++.++ . +.. +| +.|++++ +.+..+|... ..+++|+.|++++++--..+|..
T Consensus 187 Ls~N-~L~~lp----~-~~~--~L~~~~~~L~~L~Ls~--N~l~~lp~~l-------~~l~~L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 187 VSTN-LLESLP----A-VPV--RNHHSEETEIFFRCRE--NRITHIPENI-------LSLDPTCTIILEDNPLSSRIRES 249 (571)
T ss_dssp CCSS-CCSSCC----C-CC----------CCEEEECCS--SCCCCCCGGG-------GGSCTTEEEECCSSSCCHHHHHH
T ss_pred CcCC-CCCchh----h-HHH--hhhcccccceEEecCC--CcceecCHHH-------hcCCCCCEEEeeCCcCCCcCHHH
Confidence 7774 455444 1 221 45 7777777 5666676655 24667777777775433344544
Q ss_pred ccc
Q 043298 286 IVD 288 (357)
Q Consensus 286 ~~~ 288 (357)
+..
T Consensus 250 l~~ 252 (571)
T 3cvr_A 250 LSQ 252 (571)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.43 E-value=1.6e-12 Score=124.90 Aligned_cols=172 Identities=22% Similarity=0.275 Sum_probs=135.3
Q ss_pred ccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCCCCCCcccceecccCCCcceEEEecCCC
Q 043298 21 SLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKYELPATLESLEVGNLPSSVKVLDVYGCP 100 (357)
Q Consensus 21 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~l~~~L~~L~l~~c~ 100 (357)
+|+.|+++++. ++.+|.. ++ + +|++|++++ +.++.+ | .. +++ |++|++++ +
T Consensus 60 ~L~~L~Ls~n~-L~~lp~~------l~---~--~L~~L~Ls~-N~l~~i-p--~~-----------l~~-L~~L~Ls~-N 110 (571)
T 3cvr_A 60 QFSELQLNRLN-LSSLPDN------LP---P--QITVLEITQ-NALISL-P--EL-----------PAS-LEYLDACD-N 110 (571)
T ss_dssp TCSEEECCSSC-CSCCCSC------CC---T--TCSEEECCS-SCCSCC-C--CC-----------CTT-CCEEECCS-S
T ss_pred CccEEEeCCCC-CCccCHh------Hc---C--CCCEEECcC-CCCccc-c--cc-----------cCC-CCEEEccC-C
Confidence 89999999987 8888876 32 5 899999999 567776 6 22 344 99999999 5
Q ss_pred CchhchhccCCCCcccEEEcccccCccccCccccCccccceeecccCCCccccCCCCcCcccccEEEeecCCCccccccc
Q 043298 101 KLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSFPEGGLPCAKLRRLGIYDCERLEALPKG 180 (357)
Q Consensus 101 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 180 (357)
.++.+|. + ..+|++|++++ +.++.+|. .+++|+.|++++| .++.+|. .+++|+.|++++|. ++.+|.
T Consensus 111 ~l~~ip~-l--~~~L~~L~Ls~-N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N~-L~~lp~- 177 (571)
T 3cvr_A 111 RLSTLPE-L--PASLKHLDVDN-NQLTMLPE---LPALLEYINADNN-QLTMLPE---LPTSLEVLSVRNNQ-LTFLPE- 177 (571)
T ss_dssp CCSCCCC-C--CTTCCEEECCS-SCCSCCCC---CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC-CSCCCC-
T ss_pred CCCCcch-h--hcCCCEEECCC-CcCCCCCC---cCccccEEeCCCC-ccCcCCC---cCCCcCEEECCCCC-CCCcch-
Confidence 7888887 4 33799999999 77888886 6899999999985 5667776 46799999999865 555777
Q ss_pred ccCCCCCceEEecC-ccCCccCCCCCCcc-------ceEEecCCcchhhhhhhcccccCCCCCcceEEeec
Q 043298 181 LHNLSSLQELTIGG-ELPSLEEDGLPTNL-------HSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGG 243 (357)
Q Consensus 181 ~~~l~~L~~L~l~~-~~~~~~~~~~~~~L-------~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~ 243 (357)
+. ++|+.|++++ .++.+|. +..+| +.|++++ +.++.++. .+..+++|+.|++++
T Consensus 178 l~--~~L~~L~Ls~N~L~~lp~--~~~~L~~~~~~L~~L~Ls~-N~l~~lp~----~l~~l~~L~~L~L~~ 239 (571)
T 3cvr_A 178 LP--ESLEALDVSTNLLESLPA--VPVRNHHSEETEIFFRCRE-NRITHIPE----NILSLDPTCTIILED 239 (571)
T ss_dssp CC--TTCCEEECCSSCCSSCCC--CC--------CCEEEECCS-SCCCCCCG----GGGGSCTTEEEECCS
T ss_pred hh--CCCCEEECcCCCCCchhh--HHHhhhcccccceEEecCC-CcceecCH----HHhcCCCCCEEEeeC
Confidence 65 8999999999 8888886 44588 9999999 46676764 345699999999999
No 98
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.42 E-value=6.8e-13 Score=110.29 Aligned_cols=148 Identities=18% Similarity=0.201 Sum_probs=95.0
Q ss_pred cCccccceeecccCCCccccCCCCcCcccccEEEeecCCCcccccccccCCCCCceEEecC-ccCC--ccCCCCCCccce
Q 043298 134 HKLHQLREIWIRECGNLVSFPEGGLPCAKLRRLGIYDCERLEALPKGLHNLSSLQELTIGG-ELPS--LEEDGLPTNLHS 210 (357)
Q Consensus 134 ~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~--~~~~~~~~~L~~ 210 (357)
..+++|+.|+++++ .+..+| .+..+++|++|++++| .+..+ ..+..+++|++|++++ .++. ......+++|+.
T Consensus 41 ~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l~~n-~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANI-NVTDLT-GIEYAHNIKDLTINNI-HATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESS-CCSCCT-TGGGCTTCSEEEEESC-CCSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCC-CccChH-HHhcCCCCCEEEccCC-CCCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 44566666666663 444555 4555666777777665 33333 2566667777777766 4443 333455677788
Q ss_pred EEecCCcchhhhhhhcccccCCCCCcceEEeecCCCCCCcCccccccccCCCCCCCCccEEEcCccccCccccccccccc
Q 043298 211 LDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLEHLSSSIVDLQ 290 (357)
Q Consensus 211 L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~~~~ 290 (357)
|++++|. ++...+. .+..+++|++|++++ |..+..++. . ..+++|+.|++++| .+..++ .+..++
T Consensus 117 L~Ls~n~-i~~~~~~---~l~~l~~L~~L~L~~-n~~i~~~~~-l-------~~l~~L~~L~l~~n-~i~~~~-~l~~l~ 181 (197)
T 4ezg_A 117 LDISHSA-HDDSILT---KINTLPKVNSIDLSY-NGAITDIMP-L-------KTLPELKSLNIQFD-GVHDYR-GIEDFP 181 (197)
T ss_dssp EECCSSB-CBGGGHH---HHTTCSSCCEEECCS-CTBCCCCGG-G-------GGCSSCCEEECTTB-CCCCCT-TGGGCS
T ss_pred EEecCCc-cCcHhHH---HHhhCCCCCEEEccC-CCCccccHh-h-------cCCCCCCEEECCCC-CCcChH-HhccCC
Confidence 8887743 4432222 457788888888888 554666663 2 36778888888884 566666 567888
Q ss_pred ccCeeccccC
Q 043298 291 NLTSLGLYNC 300 (357)
Q Consensus 291 ~L~~L~l~~c 300 (357)
+|++|++.++
T Consensus 182 ~L~~L~l~~N 191 (197)
T 4ezg_A 182 KLNQLYAFSQ 191 (197)
T ss_dssp SCCEEEECBC
T ss_pred CCCEEEeeCc
Confidence 8888888873
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.42 E-value=1.2e-12 Score=109.77 Aligned_cols=170 Identities=20% Similarity=0.252 Sum_probs=93.5
Q ss_pred EEEecCCCCchhchhccCCCCcccEEEcccccCccccCcc-ccCccccceeecccCCCccccCCC-CcCcccccEEEeec
Q 043298 93 VLDVYGCPKLESIAERLDNNTSLETISIYNCENLKILPSG-LHKLHQLREIWIRECGNLVSFPEG-GLPCAKLRRLGIYD 170 (357)
Q Consensus 93 ~L~l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~ 170 (357)
.++.++ ..++.+|... +.++++|++++ +.++.++.. +..+++|++|+++++ .++.++.. +..+++|++|++++
T Consensus 11 ~v~c~~-~~l~~~p~~~--~~~l~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 11 TVECYS-QGRTSVPTGI--PAQTTYLDLET-NSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp EEECCS-SCCSSCCSCC--CTTCSEEECCS-SCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred EEEecC-CCccCCCCCC--CCCCcEEEcCC-CccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCC
Confidence 344444 4555555543 34577777776 455555433 456777777777663 44555543 45566777777776
Q ss_pred CCCccccc-ccccCCCCCceEEecC-ccCCccC--CCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeecCCC
Q 043298 171 CERLEALP-KGLHNLSSLQELTIGG-ELPSLEE--DGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDD 246 (357)
Q Consensus 171 ~~~~~~~~-~~~~~l~~L~~L~l~~-~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~ 246 (357)
|.. +.++ ..+..+++|++|++++ .++.++. ...+++|+.|++++| .++.+++. .+..+++|+.|++++ +
T Consensus 86 n~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~---~~~~l~~L~~L~l~~-N- 158 (208)
T 2o6s_A 86 NQL-QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDG---VFDRLTSLQYIWLHD-N- 158 (208)
T ss_dssp SCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTT---TTTTCTTCCEEECCS-C-
T ss_pred CcC-CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHH---HhccCCCccEEEecC-C-
Confidence 543 3333 3456667777777766 5555544 234566666666663 34444432 355666677777766 2
Q ss_pred CCCcCccccccccCCCCCCCCccEEEcCccccCcccccccc
Q 043298 247 DMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLEHLSSSIV 287 (357)
Q Consensus 247 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~~ 287 (357)
.+ . ..+++|+.|+++.+..-..+|.++.
T Consensus 159 ~~---~----------~~~~~l~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 159 PW---D----------CTCPGIRYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp CB---C----------CCTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred Ce---e----------cCCCCHHHHHHHHHhCCceeeccCc
Confidence 11 1 1345566666665433335554433
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.41 E-value=1.3e-12 Score=126.66 Aligned_cols=173 Identities=18% Similarity=0.257 Sum_probs=136.9
Q ss_pred CCCcccEEEcccccCccccCccccCccccceeecccCCCccccCCCCcCcccccEEEeecCCCcccccccccCCCCCceE
Q 043298 111 NNTSLETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSFPEGGLPCAKLRRLGIYDCERLEALPKGLHNLSSLQEL 190 (357)
Q Consensus 111 ~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 190 (357)
.+.+|+.|++++ +.+..++ .+..+++|+.|++++| .+..++. +..+++|+.|++++|. +..++ .+..+++|+.|
T Consensus 41 ~L~~L~~L~l~~-n~i~~l~-~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 41 ELNSIDQIIANN-SDIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKSL 114 (605)
T ss_dssp HHTTCCCCBCTT-CCCCCCT-TGGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCEE
T ss_pred cCCCCCEEECcC-CCCCCCh-HHccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCCCCCEE
Confidence 345699999988 5677776 5788999999999985 4566655 7788999999999864 55554 78899999999
Q ss_pred EecC-ccCCccCCCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeecCCCCCCcCccccccccCCCCCCCCcc
Q 043298 191 TIGG-ELPSLEEDGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDMVSFPLEDKRLGTALPLPASLT 269 (357)
Q Consensus 191 ~l~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~ 269 (357)
++++ .+..++....+++|+.|++++| .+..+. .+..+++|+.|++++ +.+..++. . ..+++|+
T Consensus 115 ~Ls~N~l~~l~~l~~l~~L~~L~Ls~N-~l~~l~-----~l~~l~~L~~L~Ls~--N~l~~~~~-l-------~~l~~L~ 178 (605)
T 1m9s_A 115 SLEHNGISDINGLVHLPQLESLYLGNN-KITDIT-----VLSRLTKLDTLSLED--NQISDIVP-L-------AGLTKLQ 178 (605)
T ss_dssp ECTTSCCCCCGGGGGCTTCSEEECCSS-CCCCCG-----GGGSCTTCSEEECCS--SCCCCCGG-G-------TTCTTCC
T ss_pred EecCCCCCCCccccCCCccCEEECCCC-ccCCch-----hhcccCCCCEEECcC--CcCCCchh-h-------ccCCCCC
Confidence 9999 7877777777899999999995 555553 468899999999999 45666655 3 4788999
Q ss_pred EEEcCccccCcccccccccccccCeeccccCCCCcccCC
Q 043298 270 SLWIEDFPNLEHLSSSIVDLQNLTSLGLYNCPKLKYFPE 308 (357)
Q Consensus 270 ~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~ 308 (357)
.|++++| .+..++ .+..+++|+.|++.+| .+...|.
T Consensus 179 ~L~Ls~N-~i~~l~-~l~~l~~L~~L~L~~N-~l~~~p~ 214 (605)
T 1m9s_A 179 NLYLSKN-HISDLR-ALAGLKNLDVLELFSQ-ECLNKPI 214 (605)
T ss_dssp EEECCSS-CCCBCG-GGTTCTTCSEEECCSE-EEECCCC
T ss_pred EEECcCC-CCCCCh-HHccCCCCCEEEccCC-cCcCCcc
Confidence 9999994 677775 5788999999999985 4544433
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.41 E-value=6.1e-13 Score=128.98 Aligned_cols=168 Identities=19% Similarity=0.256 Sum_probs=104.0
Q ss_pred cccccccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCCCCCCcccceecccCCCcceEEE
Q 043298 16 VQLPSSLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKYELPATLESLEVGNLPSSVKVLD 95 (357)
Q Consensus 16 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~l~~~L~~L~ 95 (357)
...+++|+.|+++++. +..++. +..++ +|+.|++++| .++.+ ++ +..+++ |++|+
T Consensus 39 ~~~L~~L~~L~l~~n~-i~~l~~--------l~~l~--~L~~L~Ls~N-~l~~~-~~-----------l~~l~~-L~~L~ 93 (605)
T 1m9s_A 39 QNELNSIDQIIANNSD-IKSVQG--------IQYLP--NVTKLFLNGN-KLTDI-KP-----------LTNLKN-LGWLF 93 (605)
T ss_dssp HHHHTTCCCCBCTTCC-CCCCTT--------GGGCT--TCCEEECTTS-CCCCC-GG-----------GGGCTT-CCEEE
T ss_pred hhcCCCCCEEECcCCC-CCCChH--------HccCC--CCCEEEeeCC-CCCCC-hh-----------hccCCC-CCEEE
Confidence 3346777777777766 666553 25555 7777777774 45554 32 224444 77777
Q ss_pred ecCCCCchhchhccCCCCcccEEEcccccCccccCccccCccccceeecccCCCccccCCCCcCcccccEEEeecCCCcc
Q 043298 96 VYGCPKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSFPEGGLPCAKLRRLGIYDCERLE 175 (357)
Q Consensus 96 l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~ 175 (357)
+++ +.++.++. +..+.+|+.|++++ +.+..++ .+..+++|+.|++++| .+..+ ..+..+++|+.|++++|.. .
T Consensus 94 Ls~-N~l~~l~~-l~~l~~L~~L~Ls~-N~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l-~~l~~l~~L~~L~Ls~N~l-~ 166 (605)
T 1m9s_A 94 LDE-NKIKDLSS-LKDLKKLKSLSLEH-NGISDIN-GLVHLPQLESLYLGNN-KITDI-TVLSRLTKLDTLSLEDNQI-S 166 (605)
T ss_dssp CCS-SCCCCCTT-STTCTTCCEEECTT-SCCCCCG-GGGGCTTCSEEECCSS-CCCCC-GGGGSCTTCSEEECCSSCC-C
T ss_pred CcC-CCCCCChh-hccCCCCCEEEecC-CCCCCCc-cccCCCccCEEECCCC-ccCCc-hhhcccCCCCEEECcCCcC-C
Confidence 777 35565553 23455577777777 4565553 4666777777777764 34444 3455667777777776543 3
Q ss_pred cccccccCCCCCceEEecC-ccCCccCCCCCCccceEEecCC
Q 043298 176 ALPKGLHNLSSLQELTIGG-ELPSLEEDGLPTNLHSLDIWGN 216 (357)
Q Consensus 176 ~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~L~~L~l~~~ 216 (357)
.++. +..+++|+.|++++ .++.++....+++|+.|++++|
T Consensus 167 ~~~~-l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N 207 (605)
T 1m9s_A 167 DIVP-LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQ 207 (605)
T ss_dssp CCGG-GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSE
T ss_pred Cchh-hccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCC
Confidence 3332 66777777777777 6666655666677777777764
No 102
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.41 E-value=4.8e-13 Score=116.46 Aligned_cols=138 Identities=17% Similarity=0.203 Sum_probs=66.0
Q ss_pred ceEEEecCCCCchhchhccCCCCcccEEEcccccCccccCccccCccccceeecccCCCccccCCCCcCcccccEEEeec
Q 043298 91 VKVLDVYGCPKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSFPEGGLPCAKLRRLGIYD 170 (357)
Q Consensus 91 L~~L~l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~ 170 (357)
+..+++++ +.+++++... .+.+|+.|++++ +.++.++ .+..+++|+.|++++| .+..++. +..+++|+.|++++
T Consensus 21 l~~l~l~~-~~i~~~~~~~-~l~~L~~L~l~~-n~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 21 AVKQNLGK-QSVTDLVSQK-ELSGVQNFNGDN-SNIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHTC-SCTTSEECHH-HHTTCSEEECTT-SCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCS
T ss_pred HHHHHhcC-CCcccccchh-hcCcCcEEECcC-CCcccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCC
Confidence 44444444 3444444222 233466666655 3455554 4555556666666553 3444443 44455566666555
Q ss_pred CCCcccccccccCCCCCceEEecC-ccCCccCCCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeec
Q 043298 171 CERLEALPKGLHNLSSLQELTIGG-ELPSLEEDGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGG 243 (357)
Q Consensus 171 ~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~ 243 (357)
|. ++.++.. .. ++|+.|++++ .++.++....+++|+.|++++| .++.++ .+..+++|+.|++++
T Consensus 95 N~-l~~l~~~-~~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N-~i~~~~-----~l~~l~~L~~L~L~~ 159 (263)
T 1xeu_A 95 NR-LKNLNGI-PS-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNN-KLKSIV-----MLGFLSKLEVLDLHG 159 (263)
T ss_dssp SC-CSCCTTC-CC-SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTS-CCCBCG-----GGGGCTTCCEEECTT
T ss_pred Cc-cCCcCcc-cc-CcccEEEccCCccCCChhhcCcccccEEECCCC-cCCCCh-----HHccCCCCCEEECCC
Confidence 32 3333321 12 5555555555 4444444444555555555552 333333 134455555555555
No 103
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.40 E-value=4.8e-14 Score=129.80 Aligned_cols=234 Identities=13% Similarity=0.101 Sum_probs=152.3
Q ss_pred CCCCcCCccEEEEecCCCccccccCCCCCCcccceecccCCCcceEEEecCC--CCch-hchhcc-------CCCCcccE
Q 043298 48 RRYTSSLLEELFVFNCDSLTCIFSKYELPATLESLEVGNLPSSVKVLDVYGC--PKLE-SIAERL-------DNNTSLET 117 (357)
Q Consensus 48 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~l~~~L~~L~l~~c--~~~~-~~~~~~-------~~~~~L~~ 117 (357)
...+ +|++|++++| .++...+.. .... +..+++ |++|++++| +.++ .+|... ..+.+|++
T Consensus 29 ~~~~--~L~~L~L~~n-~i~~~~~~~-l~~~-----l~~~~~-L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~ 98 (386)
T 2ca6_A 29 LEDD--SVKEIVLSGN-TIGTEAARW-LSEN-----IASKKD-LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHT 98 (386)
T ss_dssp HHCS--CCCEEECTTS-EECHHHHHH-HHHT-----TTTCTT-CCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCE
T ss_pred hcCC--CccEEECCCC-CCCHHHHHH-HHHH-----HHhCCC-ccEEeCcccccCccccchhHHHHHHHHHHhhCCcccE
Confidence 4555 8999999995 455431100 0000 123455 999999986 2222 223322 35667999
Q ss_pred EEcccccCccc-----cCccccCccccceeecccCCCcc----ccCCCCcCc---------ccccEEEeecCCCc-cccc
Q 043298 118 ISIYNCENLKI-----LPSGLHKLHQLREIWIRECGNLV----SFPEGGLPC---------AKLRRLGIYDCERL-EALP 178 (357)
Q Consensus 118 L~l~~c~~l~~-----l~~~~~~l~~L~~L~l~~~~~l~----~~~~~~~~l---------~~L~~L~l~~~~~~-~~~~ 178 (357)
|++++ +.+.. ++..+..+++|+.|++++|.... .++..+..+ ++|++|++++|... ..++
T Consensus 99 L~Ls~-n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 177 (386)
T 2ca6_A 99 VRLSD-NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK 177 (386)
T ss_dssp EECCS-CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHH
T ss_pred EECCC-CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHH
Confidence 99998 55654 56677889999999999975422 122222233 79999999987654 3333
Q ss_pred ---ccccCCCCCceEEecC-ccC------Ccc-CCCCCCccceEEecCCcch----hhhhhhcccccCCCCCcceEEeec
Q 043298 179 ---KGLHNLSSLQELTIGG-ELP------SLE-EDGLPTNLHSLDIWGNMEI----WKSMIERGRGFHRFSSLGHLKIGG 243 (357)
Q Consensus 179 ---~~~~~l~~L~~L~l~~-~~~------~~~-~~~~~~~L~~L~l~~~~~l----~~~~~~~~~~l~~~~~L~~L~l~~ 243 (357)
..+..+++|++|++++ .++ .++ ....+++|+.|++++|.-- ..++ ..+..+++|+.|++++
T Consensus 178 ~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~----~~l~~~~~L~~L~L~~ 253 (386)
T 2ca6_A 178 EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA----IALKSWPNLRELGLND 253 (386)
T ss_dssp HHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH----HHGGGCTTCCEEECTT
T ss_pred HHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHH----HHHccCCCcCEEECCC
Confidence 4667888999999988 555 233 3556789999999996532 3333 2467889999999999
Q ss_pred CCCCCCcC-----ccccccccCCCCCCCCccEEEcCccccCcc-----ccccc-ccccccCeeccccCCCCcc
Q 043298 244 CDDDMVSF-----PLEDKRLGTALPLPASLTSLWIEDFPNLEH-----LSSSI-VDLQNLTSLGLYNCPKLKY 305 (357)
Q Consensus 244 ~c~~l~~~-----~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-----i~~~~-~~~~~L~~L~l~~c~~l~~ 305 (357)
| .+... +.... ...+++|++|++++| .+.. +|..+ ..+++|++|++.+| .++.
T Consensus 254 -n-~i~~~~~~~l~~~l~-----~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N-~l~~ 317 (386)
T 2ca6_A 254 -C-LLSARGAAAVVDAFS-----KLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGN-RFSE 317 (386)
T ss_dssp -C-CCCHHHHHHHHHHHH-----TCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTS-BSCT
T ss_pred -C-CCchhhHHHHHHHHh-----hccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCC-cCCc
Confidence 4 34432 22110 013688999999995 5555 77666 55899999999985 4443
No 104
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.39 E-value=2.1e-14 Score=131.14 Aligned_cols=220 Identities=16% Similarity=0.129 Sum_probs=128.1
Q ss_pred ceEEEecCCCCchhchh-----cc-CCCCcccEEEcccccCcccc-CccccCc-----cccceeecccCCCccccC-CC-
Q 043298 91 VKVLDVYGCPKLESIAE-----RL-DNNTSLETISIYNCENLKIL-PSGLHKL-----HQLREIWIRECGNLVSFP-EG- 156 (357)
Q Consensus 91 L~~L~l~~c~~~~~~~~-----~~-~~~~~L~~L~l~~c~~l~~l-~~~~~~l-----~~L~~L~l~~~~~l~~~~-~~- 156 (357)
|++|++++| .++..+. .. ..+.+|++|++++ +.++.. +..+..+ ++|++|++++|. +...+ ..
T Consensus 24 L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~-N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l 100 (362)
T 3goz_A 24 VTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSG-NSLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSSDEL 100 (362)
T ss_dssp CCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCS-SCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHH
T ss_pred ceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcC-CCCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHHHHH
Confidence 888888884 5665543 22 2332699999988 456543 3334443 889999998865 44332 21
Q ss_pred ---CcCc-ccccEEEeecCCCccccccc----ccC-CCCCceEEecC-ccCC-----ccC--CCCCCccceEEecCCcch
Q 043298 157 ---GLPC-AKLRRLGIYDCERLEALPKG----LHN-LSSLQELTIGG-ELPS-----LEE--DGLPTNLHSLDIWGNMEI 219 (357)
Q Consensus 157 ---~~~l-~~L~~L~l~~~~~~~~~~~~----~~~-l~~L~~L~l~~-~~~~-----~~~--~~~~~~L~~L~l~~~~~l 219 (357)
+..+ ++|++|++++|......+.. +.. .++|++|++++ .++. ++. ....++|++|++++|. +
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l 179 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN-L 179 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-G
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC-C
Confidence 2223 68999999886643322222 334 35889998887 4442 111 1222488899988853 4
Q ss_pred hhhhhh-cccccCCC-CCcceEEeecCCCCCCc-----CccccccccCCCCCCCCccEEEcCccccCcccc-----cccc
Q 043298 220 WKSMIE-RGRGFHRF-SSLGHLKIGGCDDDMVS-----FPLEDKRLGTALPLPASLTSLWIEDFPNLEHLS-----SSIV 287 (357)
Q Consensus 220 ~~~~~~-~~~~l~~~-~~L~~L~l~~~c~~l~~-----~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~-----~~~~ 287 (357)
+...+. ....+..+ ++|++|++++ +.+.. ++.... ..+++|++|+++++ .+...+ ..+.
T Consensus 180 ~~~~~~~l~~~l~~~~~~L~~L~Ls~--N~i~~~~~~~l~~~l~------~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~ 250 (362)
T 3goz_A 180 ASKNCAELAKFLASIPASVTSLDLSA--NLLGLKSYAELAYIFS------SIPNHVVSLNLCLN-CLHGPSLENLKLLKD 250 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECTT--SCGGGSCHHHHHHHHH------HSCTTCCEEECCSS-CCCCCCHHHHHHTTT
T ss_pred chhhHHHHHHHHHhCCCCCCEEECCC--CCCChhHHHHHHHHHh------cCCCCceEEECcCC-CCCcHHHHHHHHHHh
Confidence 433321 00123445 4888899888 34444 222221 12468889998884 555432 3346
Q ss_pred cccccCeeccccCCCCccc--------CC-CCCccCCceEEecCCh
Q 043298 288 DLQNLTSLGLYNCPKLKYF--------PE-KGLPSSLLLLWIEGCP 324 (357)
Q Consensus 288 ~~~~L~~L~l~~c~~l~~l--------~~-~~~~~~L~~L~i~~c~ 324 (357)
.+++|++|++.+|. +..+ +. ...+++|++|++++++
T Consensus 251 ~l~~L~~L~L~~n~-l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 251 SLKHLQTVYLDYDI-VKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp TTTTCSEEEEEHHH-HTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred cCCCccEEEeccCC-ccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 67888888888853 2221 11 1235678888888764
No 105
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.36 E-value=6e-14 Score=129.18 Aligned_cols=222 Identities=17% Similarity=0.196 Sum_probs=151.4
Q ss_pred cCCCcceEEEecCCCCchh-----chhccCCCCcccEEEcccc--cCcc-ccCcc-------ccCccccceeecccCCCc
Q 043298 86 NLPSSVKVLDVYGCPKLES-----IAERLDNNTSLETISIYNC--ENLK-ILPSG-------LHKLHQLREIWIRECGNL 150 (357)
Q Consensus 86 ~l~~~L~~L~l~~c~~~~~-----~~~~~~~~~~L~~L~l~~c--~~l~-~l~~~-------~~~l~~L~~L~l~~~~~l 150 (357)
.++. |++|++++| .++. ++..+...++|++|++++| +.+. .+|.. +..+++|++|++++|...
T Consensus 30 ~~~~-L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 30 EDDS-VKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HCSC-CCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred cCCC-ccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 4566 999999995 5553 2333345667999999985 2332 23333 367899999999996533
Q ss_pred c----ccCCCCcCcccccEEEeecCCCccc----ccccccCC---------CCCceEEecC-ccC--Ccc----CCCCCC
Q 043298 151 V----SFPEGGLPCAKLRRLGIYDCERLEA----LPKGLHNL---------SSLQELTIGG-ELP--SLE----EDGLPT 206 (357)
Q Consensus 151 ~----~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l---------~~L~~L~l~~-~~~--~~~----~~~~~~ 206 (357)
. .++..+..+++|++|++++|..... ++..+..+ ++|++|++++ .++ .++ ....++
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 187 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 187 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence 3 2555567789999999999775322 23334444 8999999988 554 333 123467
Q ss_pred ccceEEecCCcchhh-----hhhhcccccCCCCCcceEEeecCCCCC-----CcCccccccccCCCCCCCCccEEEcCcc
Q 043298 207 NLHSLDIWGNMEIWK-----SMIERGRGFHRFSSLGHLKIGGCDDDM-----VSFPLEDKRLGTALPLPASLTSLWIEDF 276 (357)
Q Consensus 207 ~L~~L~l~~~~~l~~-----~~~~~~~~l~~~~~L~~L~l~~~c~~l-----~~~~~~~~~~~~~~~~~~~L~~L~l~~c 276 (357)
+|++|++++|. +.. ..+ ..+..+++|+.|++++ | .+ ..++... ..+++|++|++++|
T Consensus 188 ~L~~L~L~~n~-l~~~g~~~l~~---~~l~~~~~L~~L~Ls~-n-~l~~~g~~~l~~~l-------~~~~~L~~L~L~~n 254 (386)
T 2ca6_A 188 LLHTVKMVQNG-IRPEGIEHLLL---EGLAYCQELKVLDLQD-N-TFTHLGSSALAIAL-------KSWPNLRELGLNDC 254 (386)
T ss_dssp TCCEEECCSSC-CCHHHHHHHHH---TTGGGCTTCCEEECCS-S-CCHHHHHHHHHHHG-------GGCTTCCEEECTTC
T ss_pred CcCEEECcCCC-CCHhHHHHHHH---HHhhcCCCccEEECcC-C-CCCcHHHHHHHHHH-------ccCCCcCEEECCCC
Confidence 99999999964 442 222 1467889999999999 4 44 3334333 46789999999996
Q ss_pred ccCcc-----ccccccc--ccccCeeccccCCCCcc-----cCCC--CCccCCceEEecCCh
Q 043298 277 PNLEH-----LSSSIVD--LQNLTSLGLYNCPKLKY-----FPEK--GLPSSLLLLWIEGCP 324 (357)
Q Consensus 277 ~~l~~-----i~~~~~~--~~~L~~L~l~~c~~l~~-----l~~~--~~~~~L~~L~i~~c~ 324 (357)
. +.. ++..+.. +++|++|++++| .++. ++.. ..+++|+.|++++|+
T Consensus 255 ~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 255 L-LSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp C-CCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred C-CchhhHHHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 4 543 3555533 899999999995 5655 5442 125899999999874
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.34 E-value=2.6e-12 Score=111.80 Aligned_cols=169 Identities=17% Similarity=0.203 Sum_probs=134.6
Q ss_pred CcccEEEcccccCccccCccccCccccceeecccCCCccccCCCCcCcccccEEEeecCCCcccccccccCCCCCceEEe
Q 043298 113 TSLETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSFPEGGLPCAKLRRLGIYDCERLEALPKGLHNLSSLQELTI 192 (357)
Q Consensus 113 ~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 192 (357)
.++..+++++ +.++.++ .+..+++|+.|++++| .+..++ .+..+++|+.|++++|. +..++. +..+++|++|++
T Consensus 19 ~~l~~l~l~~-~~i~~~~-~~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGK-QSVTDLV-SQKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTC-SCTTSEE-CHHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHhcC-CCccccc-chhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEEC
Confidence 3466677777 6677766 5778999999999995 677777 57778999999999864 566655 899999999999
Q ss_pred cC-ccCCccCCCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeecCCCCCCcCccccccccCCCCCCCCccEE
Q 043298 193 GG-ELPSLEEDGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDMVSFPLEDKRLGTALPLPASLTSL 271 (357)
Q Consensus 193 ~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L 271 (357)
++ .++.++.... ++|+.|++++| .++.++ .+..+++|+.|++++ +.+..++. . ..+++|+.|
T Consensus 93 ~~N~l~~l~~~~~-~~L~~L~L~~N-~l~~~~-----~l~~l~~L~~L~Ls~--N~i~~~~~-l-------~~l~~L~~L 155 (263)
T 1xeu_A 93 NRNRLKNLNGIPS-ACLSRLFLDNN-ELRDTD-----SLIHLKNLEILSIRN--NKLKSIVM-L-------GFLSKLEVL 155 (263)
T ss_dssp CSSCCSCCTTCCC-SSCCEEECCSS-CCSBSG-----GGTTCTTCCEEECTT--SCCCBCGG-G-------GGCTTCCEE
T ss_pred CCCccCCcCcccc-CcccEEEccCC-ccCCCh-----hhcCcccccEEECCC--CcCCCChH-H-------ccCCCCCEE
Confidence 99 8888877655 89999999995 566655 368899999999999 56777763 2 377899999
Q ss_pred EcCccccCcccccccccccccCeeccccCCCCcccC
Q 043298 272 WIEDFPNLEHLSSSIVDLQNLTSLGLYNCPKLKYFP 307 (357)
Q Consensus 272 ~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~ 307 (357)
++++ +.+..+ ..+..+++|+.|++.++ .+...+
T Consensus 156 ~L~~-N~i~~~-~~l~~l~~L~~L~l~~N-~~~~~~ 188 (263)
T 1xeu_A 156 DLHG-NEITNT-GGLTRLKKVNWIDLTGQ-KCVNEP 188 (263)
T ss_dssp ECTT-SCCCBC-TTSTTCCCCCEEEEEEE-EEECCC
T ss_pred ECCC-CcCcch-HHhccCCCCCEEeCCCC-cccCCc
Confidence 9999 567777 56788999999999984 454443
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.34 E-value=1.8e-11 Score=103.42 Aligned_cols=144 Identities=17% Similarity=0.265 Sum_probs=70.1
Q ss_pred EEEcccccCccccCccccCccccceeecccCCCccccCC-CCcCcccccEEEeecCCCcccccccccCCCCCceEEecC-
Q 043298 117 TISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSFPE-GGLPCAKLRRLGIYDCERLEALPKGLHNLSSLQELTIGG- 194 (357)
Q Consensus 117 ~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~- 194 (357)
.++.++ +.++.+|..+. ++++.|+++++ .+..++. .+..+++|+.|++++|......|..|..+++|++|++++
T Consensus 15 ~v~c~~-~~l~~iP~~l~--~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 15 IVDCRG-KGLTEIPTNLP--ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp EEECTT-SCCSSCCSSCC--TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred EEEcCC-CCcCcCCCccC--cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 344433 34444443332 34445555442 3333332 334445555555555433333344555555555555555
Q ss_pred ccCCccC--CCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeecCCCCCCcCccccccccCCCCCCCCccEEE
Q 043298 195 ELPSLEE--DGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDMVSFPLEDKRLGTALPLPASLTSLW 272 (357)
Q Consensus 195 ~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~ 272 (357)
.++.++. +..+++|+.|++++ +.++.+++. .+..+++|+.|++++ +.+..++... +..+++|+.|+
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~-N~l~~~~~~---~~~~l~~L~~L~L~~--N~l~~~~~~~------~~~l~~L~~L~ 158 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNA-NKINCLRVD---AFQDLHNLNLLSLYD--NKLQTIAKGT------FSPLRAIQTMH 158 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTT---TTTTCTTCCEEECCS--SCCSCCCTTT------TTTCTTCCEEE
T ss_pred cCCccCHhHccCCCCCCEEECCC-CCCCEeCHH---HcCCCCCCCEEECCC--CcCCEECHHH------HhCCCCCCEEE
Confidence 4444443 23345566666655 334444332 455666667777766 4555554432 23456677777
Q ss_pred cCcc
Q 043298 273 IEDF 276 (357)
Q Consensus 273 l~~c 276 (357)
++++
T Consensus 159 L~~N 162 (220)
T 2v9t_B 159 LAQN 162 (220)
T ss_dssp CCSS
T ss_pred eCCC
Confidence 7663
No 108
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.32 E-value=5.8e-15 Score=142.22 Aligned_cols=34 Identities=21% Similarity=0.004 Sum_probs=22.8
Q ss_pred ccccceeecccccccccccccccccccCCCCCCcCCccEEEEec
Q 043298 19 PSSLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFN 62 (357)
Q Consensus 19 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 62 (357)
.++|+.|+++++. ++.+|.. +..++ +|++|++++
T Consensus 348 ~~~L~~L~Ls~n~-L~~Lp~~-------i~~l~--~L~~L~l~~ 381 (567)
T 1dce_A 348 DEQLFRCELSVEK-STVLQSE-------LESCK--ELQELEPEN 381 (567)
T ss_dssp TTTSSSCCCCHHH-HHHHHHH-------HHHHH--HHHHHCTTC
T ss_pred CccceeccCChhh-HHhhHHH-------HHHHH--HHHHhcccc
Confidence 5677778887776 7777765 25555 677777644
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.31 E-value=1.9e-11 Score=103.31 Aligned_cols=146 Identities=16% Similarity=0.272 Sum_probs=72.3
Q ss_pred ceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCCCCCCcccceecccCCCcceEEEecCCCCc
Q 043298 23 KNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKYELPATLESLEVGNLPSSVKVLDVYGCPKL 102 (357)
Q Consensus 23 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~l~~~L~~L~l~~c~~~ 102 (357)
+.++++++. ++.+|.. + .. .+++|++++ +.++.+ ++...+.. +++ |++|++++ +.+
T Consensus 14 ~~l~~s~n~-l~~iP~~------~---~~--~~~~L~L~~-N~l~~~-~~~~~~~~--------l~~-L~~L~L~~-N~i 69 (220)
T 2v70_A 14 TTVDCSNQK-LNKIPEH------I---PQ--YTAELRLNN-NEFTVL-EATGIFKK--------LPQ-LRKINFSN-NKI 69 (220)
T ss_dssp TEEECCSSC-CSSCCSC------C---CT--TCSEEECCS-SCCCEE-CCCCCGGG--------CTT-CCEEECCS-SCC
T ss_pred CEeEeCCCC-cccCccC------C---CC--CCCEEEcCC-CcCCcc-Cchhhhcc--------CCC-CCEEECCC-CcC
Confidence 356665554 5555543 1 12 455666666 345544 32222222 233 66666666 445
Q ss_pred hhchh-ccCCCCcccEEEcccccCccccCc-cccCccccceeecccCCCcccc-CCCCcCcccccEEEeecCCCcccccc
Q 043298 103 ESIAE-RLDNNTSLETISIYNCENLKILPS-GLHKLHQLREIWIRECGNLVSF-PEGGLPCAKLRRLGIYDCERLEALPK 179 (357)
Q Consensus 103 ~~~~~-~~~~~~~L~~L~l~~c~~l~~l~~-~~~~l~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~ 179 (357)
+.++. .+..+.+|++|++++ +.++.++. .+..+++|++|++++|. +..+ |..+..+++|+.|++++|......|.
T Consensus 70 ~~i~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 147 (220)
T 2v70_A 70 TDIEEGAFEGASGVNEILLTS-NRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTVAPG 147 (220)
T ss_dssp CEECTTTTTTCTTCCEEECCS-SCCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCBCTT
T ss_pred CEECHHHhCCCCCCCEEECCC-CccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCEECHH
Confidence 55543 223344566666665 44554443 24556666666665532 3333 34445555666666655443333344
Q ss_pred cccCCCCCceEEecC
Q 043298 180 GLHNLSSLQELTIGG 194 (357)
Q Consensus 180 ~~~~l~~L~~L~l~~ 194 (357)
.+..+++|++|++++
T Consensus 148 ~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 148 AFDTLHSLSTLNLLA 162 (220)
T ss_dssp TTTTCTTCCEEECCS
T ss_pred HhcCCCCCCEEEecC
Confidence 555555555555544
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.31 E-value=1.6e-11 Score=103.76 Aligned_cols=101 Identities=14% Similarity=0.180 Sum_probs=46.7
Q ss_pred ceEEEecCCCCchhchhc-cCCCCcccEEEcccccCcccc-CccccCccccceeecccCCCccccCCC-CcCcccccEEE
Q 043298 91 VKVLDVYGCPKLESIAER-LDNNTSLETISIYNCENLKIL-PSGLHKLHQLREIWIRECGNLVSFPEG-GLPCAKLRRLG 167 (357)
Q Consensus 91 L~~L~l~~c~~~~~~~~~-~~~~~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~ 167 (357)
|++|++++ +.++.++.. +....+|++|++++ +.++.+ |..+.++++|+.|++++| .++.+|.. +..+++|+.|+
T Consensus 34 l~~L~l~~-n~i~~i~~~~~~~l~~L~~L~Ls~-N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 34 ITEIRLEQ-NTIKVIPPGAFSPYKKLRRIDLSN-NQISELAPDAFQGLRSLNSLVLYGN-KITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp CCEEECCS-SCCCEECTTSSTTCTTCCEEECCS-SCCCEECTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred CCEEECCC-CcCCCcCHhHhhCCCCCCEEECCC-CcCCCcCHHHhhCCcCCCEEECCCC-cCCccCHhHccCCCCCCEEE
Confidence 55555555 344444432 22333455555555 344433 344455555555555552 34444432 23445555555
Q ss_pred eecCCCcccccccccCCCCCceEEecC
Q 043298 168 IYDCERLEALPKGLHNLSSLQELTIGG 194 (357)
Q Consensus 168 l~~~~~~~~~~~~~~~l~~L~~L~l~~ 194 (357)
+++|......+..+..+++|+.|++++
T Consensus 111 L~~N~l~~~~~~~~~~l~~L~~L~L~~ 137 (220)
T 2v9t_B 111 LNANKINCLRVDAFQDLHNLNLLSLYD 137 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCCCCCEeCHHHcCCCCCCCEEECCC
Confidence 555433333333444455555555544
No 111
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.31 E-value=1.9e-11 Score=103.42 Aligned_cols=142 Identities=18% Similarity=0.209 Sum_probs=66.0
Q ss_pred EEEecCCCCchhchhccCCCCcccEEEcccccCccccC--ccccCccccceeecccCCCccccCC-CCcCcccccEEEee
Q 043298 93 VLDVYGCPKLESIAERLDNNTSLETISIYNCENLKILP--SGLHKLHQLREIWIRECGNLVSFPE-GGLPCAKLRRLGIY 169 (357)
Q Consensus 93 ~L~l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~--~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~ 169 (357)
.+++++ +.++.+|... +..+++|++++ +.++.++ ..+..+++|+.|+++++ .++.++. .+..+++|++|+++
T Consensus 15 ~l~~s~-n~l~~iP~~~--~~~~~~L~L~~-N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 15 TVDCSN-QKLNKIPEHI--PQYTAELRLNN-NEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp EEECCS-SCCSSCCSCC--CTTCSEEECCS-SCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECC
T ss_pred EeEeCC-CCcccCccCC--CCCCCEEEcCC-CcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECC
Confidence 445554 4455555433 33355666655 4455442 22455566666666553 3444433 44555566666666
Q ss_pred cCCCcccccccccCCCCCceEEecC-ccCCccC--CCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeec
Q 043298 170 DCERLEALPKGLHNLSSLQELTIGG-ELPSLEE--DGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGG 243 (357)
Q Consensus 170 ~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~ 243 (357)
+|......+..+..+++|++|++++ .++.++. ...+++|+.|++++ +.++.+++. .+..+++|+.|++++
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~---~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD-NQITTVAPG---AFDTLHSLSTLNLLA 162 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTT-SCCCCBCTT---TTTTCTTCCEEECCS
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCC-CcCCEECHH---HhcCCCCCCEEEecC
Confidence 5443333333455555555555555 4443322 22234444444444 223333221 234444444444444
No 112
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.30 E-value=1.2e-13 Score=126.08 Aligned_cols=240 Identities=15% Similarity=0.095 Sum_probs=113.6
Q ss_pred ccccceeecccccccccccccccccccCCCCCCcC-CccEEEEecCCCccccccCCCCCCcccceecccCCCcceEEEec
Q 043298 19 PSSLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSS-LLEELFVFNCDSLTCIFSKYELPATLESLEVGNLPSSVKVLDVY 97 (357)
Q Consensus 19 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~l~~~L~~L~l~ 97 (357)
+++|++|++++|. +...+... -+..+.. ++ +|++|++++| .++.. ........++. ..++ |++|+++
T Consensus 21 ~~~L~~L~Ls~n~-l~~~~~~~--l~~~l~~--~~~~L~~L~Ls~N-~l~~~-~~~~l~~~l~~----~~~~-L~~L~Ls 88 (362)
T 3goz_A 21 PHGVTSLDLSLNN-LYSISTVE--LIQAFAN--TPASVTSLNLSGN-SLGFK-NSDELVQILAA----IPAN-VTSLNLS 88 (362)
T ss_dssp CTTCCEEECTTSC-GGGSCHHH--HHHHHHT--CCTTCCEEECCSS-CGGGS-CHHHHHHHHHT----SCTT-CCEEECC
T ss_pred CCCceEEEccCCC-CChHHHHH--HHHHHHh--CCCceeEEECcCC-CCCHH-HHHHHHHHHhc----cCCC-ccEEECc
Confidence 4558888888876 66655310 0001121 22 5778888874 45543 11100000000 1145 8888888
Q ss_pred CCCCchhchhc-----c-CCCCcccEEEcccccCccccCc-c----ccC-ccccceeecccCCCcc----ccCCCCcCcc
Q 043298 98 GCPKLESIAER-----L-DNNTSLETISIYNCENLKILPS-G----LHK-LHQLREIWIRECGNLV----SFPEGGLPCA 161 (357)
Q Consensus 98 ~c~~~~~~~~~-----~-~~~~~L~~L~l~~c~~l~~l~~-~----~~~-l~~L~~L~l~~~~~l~----~~~~~~~~l~ 161 (357)
+| .++..+.. . ..+.+|++|++++ +.++..+. . +.. .++|++|++++|.... .++..+...+
T Consensus 89 ~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~-N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~ 166 (362)
T 3goz_A 89 GN-FLSYKSSDELVKTLAAIPFTITVLDLGW-NDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIP 166 (362)
T ss_dssp SS-CGGGSCHHHHHHHHHTSCTTCCEEECCS-SCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSC
T ss_pred CC-cCChHHHHHHHHHHHhCCCCccEEECcC-CcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCC
Confidence 74 45533221 1 1225688888877 44554432 1 222 2577778777753221 2222222333
Q ss_pred -cccEEEeecCCCcccccc----cccCC-CCCceEEecC-ccCC-----ccC-C-CCCCccceEEecCCcchhhhhhh-c
Q 043298 162 -KLRRLGIYDCERLEALPK----GLHNL-SSLQELTIGG-ELPS-----LEE-D-GLPTNLHSLDIWGNMEIWKSMIE-R 226 (357)
Q Consensus 162 -~L~~L~l~~~~~~~~~~~----~~~~l-~~L~~L~l~~-~~~~-----~~~-~-~~~~~L~~L~l~~~~~l~~~~~~-~ 226 (357)
+|++|++++|......+. .+..+ ++|++|++++ .++. ++. . ..+++|++|++++| .+.+.+.. .
T Consensus 167 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l 245 (362)
T 3goz_A 167 ANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENL 245 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHH
T ss_pred ccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHH
Confidence 777777777654333222 23344 4677777766 4433 221 1 11346666776664 33322210 0
Q ss_pred ccccCCCCCcceEEeecCCCCCCcCccc-cccccCCCCCCCCccEEEcCc
Q 043298 227 GRGFHRFSSLGHLKIGGCDDDMVSFPLE-DKRLGTALPLPASLTSLWIED 275 (357)
Q Consensus 227 ~~~l~~~~~L~~L~l~~~c~~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~ 275 (357)
...+..+++|+.|++++ | .+..+... ...+...+..+++|+.|++++
T Consensus 246 ~~~~~~l~~L~~L~L~~-n-~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~ 293 (362)
T 3goz_A 246 KLLKDSLKHLQTVYLDY-D-IVKNMSKEQCKALGAAFPNIQKIILVDKNG 293 (362)
T ss_dssp HHTTTTTTTCSEEEEEH-H-HHTTCCHHHHHHHHTTSTTCCEEEEECTTS
T ss_pred HHHHhcCCCccEEEecc-C-CccccCHHHHHHHHHHhccCCceEEEecCC
Confidence 01335556666666666 3 22222221 111222234555666666666
No 113
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.30 E-value=2.7e-11 Score=101.37 Aligned_cols=170 Identities=21% Similarity=0.228 Sum_probs=116.9
Q ss_pred ccEEEcccccCccccCccccCccccceeecccCCCccccCC-CCcCcccccEEEeecCCCccccc-ccccCCCCCceEEe
Q 043298 115 LETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSFPE-GGLPCAKLRRLGIYDCERLEALP-KGLHNLSSLQELTI 192 (357)
Q Consensus 115 L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l 192 (357)
-+.++.++ +.++.+|..+ .++|+.|+++++ .++.++. .+..+++|++|++++|+ ++.++ ..+..+++|++|++
T Consensus 9 ~~~v~c~~-~~l~~~p~~~--~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L 83 (208)
T 2o6s_A 9 GTTVECYS-QGRTSVPTGI--PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNL 83 (208)
T ss_dssp TTEEECCS-SCCSSCCSCC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEecC-CCccCCCCCC--CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEEC
Confidence 45666666 6677777554 468999999885 5566665 45678899999999865 44554 35688899999999
Q ss_pred cC-ccCCccC--CCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeecCCCCCCcCccccccccCCCCCCCCcc
Q 043298 193 GG-ELPSLEE--DGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDMVSFPLEDKRLGTALPLPASLT 269 (357)
Q Consensus 193 ~~-~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~ 269 (357)
++ .++.++. ...+++|++|++++| .++.+++. .+..+++|+.|++++ +.+..++... +..+++|+
T Consensus 84 s~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~---~~~~l~~L~~L~l~~--N~l~~~~~~~------~~~l~~L~ 151 (208)
T 2o6s_A 84 STNQLQSLPNGVFDKLTQLKELALNTN-QLQSLPDG---VFDKLTQLKDLRLYQ--NQLKSVPDGV------FDRLTSLQ 151 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTT---TTTTCTTCCEEECCS--SCCSCCCTTT------TTTCTTCC
T ss_pred CCCcCCccCHhHhcCccCCCEEEcCCC-cCcccCHh---HhccCCcCCEEECCC--CccceeCHHH------hccCCCcc
Confidence 88 7777665 345788999999884 55555542 467788899999988 4566666532 24678888
Q ss_pred EEEcCccccCcccccccccccccCeeccccCCCCcccCC
Q 043298 270 SLWIEDFPNLEHLSSSIVDLQNLTSLGLYNCPKLKYFPE 308 (357)
Q Consensus 270 ~L~l~~c~~l~~i~~~~~~~~~L~~L~l~~c~~l~~l~~ 308 (357)
+|++++++. ...++++++|++..+..-..+|.
T Consensus 152 ~L~l~~N~~-------~~~~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 152 YIWLHDNPW-------DCTCPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp EEECCSCCB-------CCCTTTTHHHHHHHHHCTTTBBC
T ss_pred EEEecCCCe-------ecCCCCHHHHHHHHHhCCceeec
Confidence 888888531 14456677777666432233443
No 114
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.30 E-value=3e-11 Score=102.78 Aligned_cols=144 Identities=19% Similarity=0.255 Sum_probs=89.3
Q ss_pred ccEEEcccccCccccCccccCccccceeecccCCCcccc-CCCCcCcccccEEEeecCCCccccc-ccccCCCCCceEEe
Q 043298 115 LETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSF-PEGGLPCAKLRRLGIYDCERLEALP-KGLHNLSSLQELTI 192 (357)
Q Consensus 115 L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l 192 (357)
.+.++.++ +.++.+|..+. ++|+.|++++|. +..+ +..+..+++|+.|++++|. ++.++ ..+..+++|+.|++
T Consensus 21 ~~~v~c~~-~~l~~ip~~~~--~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 21 GTTVDCRS-KRHASVPAGIP--TNAQILYLHDNQ-ITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp TTEEECTT-SCCSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CCEeEccC-CCcCccCCCCC--CCCCEEEcCCCc-cCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEEC
Confidence 56677766 66777776543 677888887743 4444 4556667778888887755 34444 34567777777777
Q ss_pred cC-ccCCccC--CCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeecCCCCCCcCccccccccCCCCCCCCcc
Q 043298 193 GG-ELPSLEE--DGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDMVSFPLEDKRLGTALPLPASLT 269 (357)
Q Consensus 193 ~~-~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~ 269 (357)
++ .++.++. ...+++|+.|++++ +.++.++. .+..+++|+.|++++ +.+..++... +..+++|+
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~lp~----~~~~l~~L~~L~L~~--N~l~~~~~~~------~~~l~~L~ 162 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKELFMCC-NKLTELPR----GIERLTHLTHLALDQ--NQLKSIPHGA------FDRLSSLT 162 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCS-SCCCSCCT----TGGGCTTCSEEECCS--SCCCCCCTTT------TTTCTTCC
T ss_pred CCCcCCccChhHhCcchhhCeEeccC-CcccccCc----ccccCCCCCEEECCC--CcCCccCHHH------HhCCCCCC
Confidence 77 6666554 34456777777776 34444442 345666777777766 4555555422 23556667
Q ss_pred EEEcCcc
Q 043298 270 SLWIEDF 276 (357)
Q Consensus 270 ~L~l~~c 276 (357)
.|+++++
T Consensus 163 ~L~l~~N 169 (229)
T 3e6j_A 163 HAYLFGN 169 (229)
T ss_dssp EEECTTS
T ss_pred EEEeeCC
Confidence 7777663
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.28 E-value=1.1e-11 Score=113.06 Aligned_cols=167 Identities=16% Similarity=0.202 Sum_probs=104.2
Q ss_pred ccEEEEecCCCccccccCCCCCCcccceecccCCCcceEEEecCCCCchhchhcc-C-CCCcccEEEcccccCccccC-c
Q 043298 55 LEELFVFNCDSLTCIFSKYELPATLESLEVGNLPSSVKVLDVYGCPKLESIAERL-D-NNTSLETISIYNCENLKILP-S 131 (357)
Q Consensus 55 L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~l~~~L~~L~l~~c~~~~~~~~~~-~-~~~~L~~L~l~~c~~l~~l~-~ 131 (357)
-+.++.++ ..++.+ |.. ++..+++|++++ +.++.++... . .+.+|+.|++++ +.++.++ .
T Consensus 20 ~~~l~c~~-~~l~~i-P~~-------------~~~~l~~L~Ls~-N~l~~l~~~~~~~~l~~L~~L~L~~-N~i~~i~~~ 82 (361)
T 2xot_A 20 SNILSCSK-QQLPNV-PQS-------------LPSYTALLDLSH-NNLSRLRAEWTPTRLTNLHSLLLSH-NHLNFISSE 82 (361)
T ss_dssp TTEEECCS-SCCSSC-CSS-------------CCTTCSEEECCS-SCCCEECTTSSSSCCTTCCEEECCS-SCCCEECTT
T ss_pred CCEEEeCC-CCcCcc-Ccc-------------CCCCCCEEECCC-CCCCccChhhhhhcccccCEEECCC-CcCCccChh
Confidence 46677666 456666 542 111167778887 5677666543 1 345688888877 5676665 3
Q ss_pred cccCccccceeecccCCCccccCC-CCcCcccccEEEeecCCCcccccccccCCCCCceEEecC-ccCCccCC-----CC
Q 043298 132 GLHKLHQLREIWIRECGNLVSFPE-GGLPCAKLRRLGIYDCERLEALPKGLHNLSSLQELTIGG-ELPSLEED-----GL 204 (357)
Q Consensus 132 ~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~-----~~ 204 (357)
.+..+++|+.|++++| .++.++. .+..+++|+.|++++|......+..|..+++|+.|++++ .++.++.. ..
T Consensus 83 ~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~ 161 (361)
T 2xot_A 83 AFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNK 161 (361)
T ss_dssp TTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----
T ss_pred hccCCCCCCEEECCCC-cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCccc
Confidence 4677788888888774 4555554 456677888888877655444456777777888888777 66666542 23
Q ss_pred CCccceEEecCCcchhhhhhhcccccCCCCC--cceEEeec
Q 043298 205 PTNLHSLDIWGNMEIWKSMIERGRGFHRFSS--LGHLKIGG 243 (357)
Q Consensus 205 ~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~--L~~L~l~~ 243 (357)
+++|+.|++++ +.++.++.. .+..++. ++.|++++
T Consensus 162 l~~L~~L~L~~-N~l~~l~~~---~~~~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 162 LPKLMLLDLSS-NKLKKLPLT---DLQKLPAWVKNGLYLHN 198 (361)
T ss_dssp CTTCCEEECCS-SCCCCCCHH---HHHHSCHHHHTTEECCS
T ss_pred CCcCCEEECCC-CCCCccCHH---HhhhccHhhcceEEecC
Confidence 56777777776 344444432 3344444 35666665
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.28 E-value=3e-11 Score=110.05 Aligned_cols=168 Identities=17% Similarity=0.219 Sum_probs=117.1
Q ss_pred eEEEecCCCCchhchhccCCCCcccEEEcccccCccccCcc-cc-CccccceeecccCCCccccC-CCCcCcccccEEEe
Q 043298 92 KVLDVYGCPKLESIAERLDNNTSLETISIYNCENLKILPSG-LH-KLHQLREIWIRECGNLVSFP-EGGLPCAKLRRLGI 168 (357)
Q Consensus 92 ~~L~l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~-~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l 168 (357)
+.++.++ +.++.+|... +..++.|++++ +.++.++.. +. .+++|+.|++++| .+..++ ..+..+++|++|++
T Consensus 21 ~~l~c~~-~~l~~iP~~~--~~~l~~L~Ls~-N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 21 NILSCSK-QQLPNVPQSL--PSYTALLDLSH-NNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TEEECCS-SCCSSCCSSC--CTTCSEEECCS-SCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEEC
T ss_pred CEEEeCC-CCcCccCccC--CCCCCEEECCC-CCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEEC
Confidence 5677777 6788888754 55689999988 678877654 44 7899999999884 566665 45778889999999
Q ss_pred ecCCCcccccccccCCCCCceEEecC-ccCCccC--CCCCCccceEEecCCcchhhhhhhccccc---CCCCCcceEEee
Q 043298 169 YDCERLEALPKGLHNLSSLQELTIGG-ELPSLEE--DGLPTNLHSLDIWGNMEIWKSMIERGRGF---HRFSSLGHLKIG 242 (357)
Q Consensus 169 ~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l---~~~~~L~~L~l~ 242 (357)
++|......+..|..+++|+.|++++ .++.++. ...+++|+.|++++ +.++.++.. .+ ..+++|+.|+++
T Consensus 96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~---~~~~~~~l~~L~~L~L~ 171 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ-NQISRFPVE---LIKDGNKLPKLMLLDLS 171 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCSCCGG---GTC----CTTCCEEECC
T ss_pred CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCC-CcCCeeCHH---HhcCcccCCcCCEEECC
Confidence 98664333344678889999999988 6666543 45568888888888 456655543 23 457888888888
Q ss_pred cCCCCCCcCccccccccCCCCCCCC--ccEEEcCcc
Q 043298 243 GCDDDMVSFPLEDKRLGTALPLPAS--LTSLWIEDF 276 (357)
Q Consensus 243 ~~c~~l~~~~~~~~~~~~~~~~~~~--L~~L~l~~c 276 (357)
+ +.+..++... +..++. ++.|+++++
T Consensus 172 ~--N~l~~l~~~~------~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 172 S--NKLKKLPLTD------LQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp S--SCCCCCCHHH------HHHSCHHHHTTEECCSS
T ss_pred C--CCCCccCHHH------hhhccHhhcceEEecCC
Confidence 8 5666666432 012333 467888774
No 117
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.28 E-value=5.6e-11 Score=101.08 Aligned_cols=143 Identities=22% Similarity=0.266 Sum_probs=98.1
Q ss_pred ceEEEecCCCCchhchhccCCCCcccEEEcccccCcccc-CccccCccccceeecccCCCccccCC-CCcCcccccEEEe
Q 043298 91 VKVLDVYGCPKLESIAERLDNNTSLETISIYNCENLKIL-PSGLHKLHQLREIWIRECGNLVSFPE-GGLPCAKLRRLGI 168 (357)
Q Consensus 91 L~~L~l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l 168 (357)
-+.++.++ ..++.+|... +.+|++|++++ +.+..+ +..+..+++|+.|++++| .+..++. .+..+++|+.|++
T Consensus 21 ~~~v~c~~-~~l~~ip~~~--~~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 21 GTTVDCRS-KRHASVPAGI--PTNAQILYLHD-NQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp TTEEECTT-SCCSSCCSCC--CTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEeEccC-CCcCccCCCC--CCCCCEEEcCC-CccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEEC
Confidence 34566666 5677777654 45688888887 556655 455677888888888774 4566664 3466788888888
Q ss_pred ecCCCccccc-ccccCCCCCceEEecC-ccCCccC-CCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeec
Q 043298 169 YDCERLEALP-KGLHNLSSLQELTIGG-ELPSLEE-DGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGG 243 (357)
Q Consensus 169 ~~~~~~~~~~-~~~~~l~~L~~L~l~~-~~~~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~ 243 (357)
++|. ++.++ ..+..+++|++|++++ .++.+|. ...+++|+.|++++| .++.+++. .+..+++|+.|++++
T Consensus 96 s~N~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~---~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 96 GTNQ-LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN-QLKSIPHG---AFDRLSSLTHAYLFG 168 (229)
T ss_dssp CSSC-CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTT---TTTTCTTCCEEECTT
T ss_pred CCCc-CCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCC-cCCccCHH---HHhCCCCCCEEEeeC
Confidence 8754 44443 3567788888888887 7766654 445678888888874 55555542 467778888888877
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.25 E-value=8.7e-14 Score=134.03 Aligned_cols=189 Identities=15% Similarity=0.104 Sum_probs=111.2
Q ss_pred CCcccEEEcccccCccccCccccCccccceeecccCC-------------CccccCCCCcCcccccEEE-eecCCCcccc
Q 043298 112 NTSLETISIYNCENLKILPSGLHKLHQLREIWIRECG-------------NLVSFPEGGLPCAKLRRLG-IYDCERLEAL 177 (357)
Q Consensus 112 ~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~-------------~l~~~~~~~~~l~~L~~L~-l~~~~~~~~~ 177 (357)
..+|+.|++++ +.++.+|..++.+++|++|++.++. .....|..+..+++|+.|+ ++. +.+..+
T Consensus 348 ~~~L~~L~Ls~-n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~-n~~~~L 425 (567)
T 1dce_A 348 DEQLFRCELSV-EKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA-AYLDDL 425 (567)
T ss_dssp TTTSSSCCCCH-HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGH-HHHHHH
T ss_pred CccceeccCCh-hhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhh-cccchh
Confidence 44566777776 5667777777777777777764432 1222233344455666665 222 211111
Q ss_pred cc------cccC--CCCCceEEecC-ccCCccCCCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeecCCCCC
Q 043298 178 PK------GLHN--LSSLQELTIGG-ELPSLEEDGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDM 248 (357)
Q Consensus 178 ~~------~~~~--l~~L~~L~l~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l 248 (357)
+. .+.. ...|+.|++++ .++.+|..+.+++|+.|++++| .++.+|. .+..+++|+.|++++ +.+
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N-~l~~lp~----~~~~l~~L~~L~Ls~--N~l 498 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHN-RLRALPP----ALAALRCLEVLQASD--NAL 498 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSS-CCCCCCG----GGGGCTTCCEEECCS--SCC
T ss_pred hhhhhhcccccccCccCceEEEecCCCCCCCcCccccccCcEeecCcc-cccccch----hhhcCCCCCEEECCC--CCC
Confidence 11 0100 12467777777 6666666666677777777773 4555542 456777777777777 566
Q ss_pred CcCccccccccCCCCCCCCccEEEcCccccCccc--ccccccccccCeeccccCCCCcccCCCC-----CccCCceEE
Q 043298 249 VSFPLEDKRLGTALPLPASLTSLWIEDFPNLEHL--SSSIVDLQNLTSLGLYNCPKLKYFPEKG-----LPSSLLLLW 319 (357)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i--~~~~~~~~~L~~L~l~~c~~l~~l~~~~-----~~~~L~~L~ 319 (357)
..+| .. ..+++|+.|++++ +.+..+ |..+..+++|+.|++.+ +.++.+++.. .+++|+.|+
T Consensus 499 ~~lp-~l-------~~l~~L~~L~Ls~-N~l~~~~~p~~l~~l~~L~~L~L~~-N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 499 ENVD-GV-------ANLPRLQELLLCN-NRLQQSAAIQPLVSCPRLVLLNLQG-NSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CCCG-GG-------TTCSSCCEEECCS-SCCCSSSTTGGGGGCTTCCEEECTT-SGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCc-cc-------CCCCCCcEEECCC-CCCCCCCCcHHHhcCCCCCEEEecC-CcCCCCccHHHHHHHHCcccCccC
Confidence 6666 33 3667777777777 456665 66677777777777777 3565555421 145666664
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.23 E-value=2.7e-11 Score=97.81 Aligned_cols=129 Identities=18% Similarity=0.169 Sum_probs=76.4
Q ss_pred CCCcccEEEcccccCcc--ccCccccCccccceeecccCCCccccCCCCcCcccccEEEeecCCCcccccccccCCCCCc
Q 043298 111 NNTSLETISIYNCENLK--ILPSGLHKLHQLREIWIRECGNLVSFPEGGLPCAKLRRLGIYDCERLEALPKGLHNLSSLQ 188 (357)
Q Consensus 111 ~~~~L~~L~l~~c~~l~--~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 188 (357)
.+.+|+.|++++ +.+. .+|..+..+++|+.|++++|. +..+ ..+..+++|+.|++++|.....+|..+..+++|+
T Consensus 22 ~~~~L~~L~l~~-n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 22 TPAAVRELVLDN-CKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp CTTSCSEEECCS-CBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred CcccCCEEECCC-CCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 456688888877 4455 667666777888888887754 5555 4566677788888877654444555555677777
Q ss_pred eEEecC-ccCCcc---CCCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeec
Q 043298 189 ELTIGG-ELPSLE---EDGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGG 243 (357)
Q Consensus 189 ~L~l~~-~~~~~~---~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~ 243 (357)
+|++++ .++.++ ....+++|+.|++++| .+...++.....+..+++|+.|++++
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYD 156 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCC
Confidence 777766 554432 2334455666666553 33333320001244555555555555
No 120
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.20 E-value=1.1e-10 Score=104.89 Aligned_cols=120 Identities=14% Similarity=0.206 Sum_probs=65.4
Q ss_pred CccEEEEecCCCccccccCCCCCCcccceecccCCCcceEEEecCCCCchhchhccCCCCcccEEEcccccCccccC-cc
Q 043298 54 LLEELFVFNCDSLTCIFSKYELPATLESLEVGNLPSSVKVLDVYGCPKLESIAERLDNNTSLETISIYNCENLKILP-SG 132 (357)
Q Consensus 54 ~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~l~~~L~~L~l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~~ 132 (357)
++++|.+.+.-.-.++ ..++. .+++ |++|++++ +.+..+....+....++.+.+.. + .+| ..
T Consensus 26 ~l~~L~l~g~i~~~~~-------~~l~~----~l~~-L~~LdLs~-n~i~~~~~~~~~~~~~~~~~~~~-~---~I~~~a 88 (329)
T 3sb4_A 26 SITHLTLTGKLNAEDF-------RHLRD----EFPS-LKVLDISN-AEIKMYSGKAGTYPNGKFYIYMA-N---FVPAYA 88 (329)
T ss_dssp HCSEEEEEEEECHHHH-------HHHHH----SCTT-CCEEEEEE-EEECCEEESSSSSGGGCCEEECT-T---EECTTT
T ss_pred ceeEEEEeccccHHHH-------HHHHH----hhcc-CeEEecCc-ceeEEecCccccccccccccccc-c---ccCHHH
Confidence 7999999873211111 12222 2566 99999998 56662211111112123333322 1 233 23
Q ss_pred ccC--------ccccceeecccCCCccccCC-CCcCcccccEEEeecCCCcccccccccCCCCCceEEe
Q 043298 133 LHK--------LHQLREIWIRECGNLVSFPE-GGLPCAKLRRLGIYDCERLEALPKGLHNLSSLQELTI 192 (357)
Q Consensus 133 ~~~--------l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 192 (357)
|.+ +++|+.+++.+ .++.++. .+..|++|+.+++.++......+.+|..+.++..+..
T Consensus 89 F~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~ 155 (329)
T 3sb4_A 89 FSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPL 155 (329)
T ss_dssp TEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECT
T ss_pred hcccccccccccCCCcEEECCc--cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecC
Confidence 455 78888888876 5666664 4667888888888875543333446666555555543
No 121
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.16 E-value=2.4e-10 Score=94.44 Aligned_cols=120 Identities=16% Similarity=0.203 Sum_probs=73.1
Q ss_pred eEEEecCCCCchhchhccCCCCcccEEEcccccCccccCccccCccccceeecccCCCccccC-CCCcCcccccEEEeec
Q 043298 92 KVLDVYGCPKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSFP-EGGLPCAKLRRLGIYD 170 (357)
Q Consensus 92 ~~L~l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~ 170 (357)
+.+++++ +.++.+|... +.++++|++++ +.++.+|..+..+++|+.|++++| .++.++ ..+..+++|++|++++
T Consensus 13 ~~l~~~~-~~l~~ip~~~--~~~l~~L~L~~-n~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSN-KGLKVLPKGI--PRDVTELYLDG-NQFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTT-SCCSSCCSCC--CTTCCEEECCS-SCCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCC-CCCCcCCCCC--CCCCCEEECCC-CcCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCC
Confidence 3455555 5566666543 34577777776 566677766677777777777764 444544 3456667777777777
Q ss_pred CCCcccccccccCCCCCceEEecC-ccCCccC--CCCCCccceEEecCC
Q 043298 171 CERLEALPKGLHNLSSLQELTIGG-ELPSLEE--DGLPTNLHSLDIWGN 216 (357)
Q Consensus 171 ~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~--~~~~~~L~~L~l~~~ 216 (357)
|......+..|..+++|++|++++ .++.++. ...+++|+.|++++|
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence 554333344566677777777766 5555544 233456666666653
No 122
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.15 E-value=2.8e-10 Score=102.22 Aligned_cols=213 Identities=15% Similarity=0.088 Sum_probs=107.2
Q ss_pred CCCcceEEEecCCCCchhchhcc-CCCCcccEEEcccccCccccC-ccccCccccceeecccCC---CccccCC-CCcCc
Q 043298 87 LPSSVKVLDVYGCPKLESIAERL-DNNTSLETISIYNCENLKILP-SGLHKLHQLREIWIRECG---NLVSFPE-GGLPC 160 (357)
Q Consensus 87 l~~~L~~L~l~~c~~~~~~~~~~-~~~~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~~~---~l~~~~~-~~~~l 160 (357)
+++ |+++.+.. .++.++... ..+.+|+.+++.+ +.+..++ ..+.++.++..+...... ....+.. .+..+
T Consensus 100 ~~~-L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~-n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~ 175 (329)
T 3sb4_A 100 KQT-LEKVILSE--KIKNIEDAAFKGCDNLKICQIRK-KTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG 175 (329)
T ss_dssp CTT-CCC-CBCT--TCCEECTTTTTTCTTCCEEEBCC-SSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred cCC-CcEEECCc--cccchhHHHhhcCcccceEEcCC-CCccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence 444 66666665 455555543 3455688888876 5555554 334555555555543310 1112221 23334
Q ss_pred cccc-EEEeecCCCccccc-ccccCCCCCceEEecCccC--CccC-CCCCCccceEEecCCcchhhhhhhcccccCCCCC
Q 043298 161 AKLR-RLGIYDCERLEALP-KGLHNLSSLQELTIGGELP--SLEE-DGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSS 235 (357)
Q Consensus 161 ~~L~-~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~--~~~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~ 235 (357)
.+|+ .+.+.....+.... ..--...++..+.+.+.+. .+.. ...+++|+.+++.+ +.++.++.. .|.++++
T Consensus 176 ~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~-n~i~~I~~~---aF~~~~~ 251 (329)
T 3sb4_A 176 EPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISK-TNATTIPDF---TFAQKKY 251 (329)
T ss_dssp CCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTT-BCCCEECTT---TTTTCTT
T ss_pred cccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCC-CCcceecHh---hhhCCCC
Confidence 4555 33333222111110 0111234455555444100 0000 01246677777776 335555543 5677777
Q ss_pred cceEEeecCCCCCCcCccccccccCCCCCCCCcc-EEEcCccccCcccc-cccccccccCeeccccCCCCcccCCCCC--
Q 043298 236 LGHLKIGGCDDDMVSFPLEDKRLGTALPLPASLT-SLWIEDFPNLEHLS-SSIVDLQNLTSLGLYNCPKLKYFPEKGL-- 311 (357)
Q Consensus 236 L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~-~L~l~~c~~l~~i~-~~~~~~~~L~~L~l~~c~~l~~l~~~~~-- 311 (357)
|+++++.+ + +..++... +..+.+|+ .+++.+ .++.++ ..|.++++|+.+++.+ +.++.++...+
T Consensus 252 L~~l~l~~--n-i~~I~~~a------F~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~-n~i~~I~~~aF~~ 319 (329)
T 3sb4_A 252 LLKIKLPH--N-LKTIGQRV------FSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATG-DKITTLGDELFGN 319 (329)
T ss_dssp CCEEECCT--T-CCEECTTT------TTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECS-SCCCEECTTTTCT
T ss_pred CCEEECCc--c-cceehHHH------hhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCC-CccCccchhhhcC
Confidence 77777776 2 55555433 45666777 777765 556664 4566777777777755 46666666443
Q ss_pred ccCCceEE
Q 043298 312 PSSLLLLW 319 (357)
Q Consensus 312 ~~~L~~L~ 319 (357)
+++|+.|+
T Consensus 320 ~~~L~~ly 327 (329)
T 3sb4_A 320 GVPSKLIY 327 (329)
T ss_dssp TCCCCEEE
T ss_pred Ccchhhhc
Confidence 44555554
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.14 E-value=2.1e-10 Score=92.45 Aligned_cols=132 Identities=20% Similarity=0.239 Sum_probs=65.7
Q ss_pred cccceeecccCCCcc--ccCCCCcCcccccEEEeecCCCcccccccccCCCCCceEEecCccCCccCCCCCCccceEEec
Q 043298 137 HQLREIWIRECGNLV--SFPEGGLPCAKLRRLGIYDCERLEALPKGLHNLSSLQELTIGGELPSLEEDGLPTNLHSLDIW 214 (357)
Q Consensus 137 ~~L~~L~l~~~~~l~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~ 214 (357)
++|+.|++++|. +. .+|..+..+++|+.|++++|. ++.+ ..+..+ ++|+.|+++
T Consensus 24 ~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l---------------------~~L~~L~Ls 79 (168)
T 2ell_A 24 AAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKL---------------------PKLKKLELS 79 (168)
T ss_dssp TSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCC---------------------SSCCEEEEE
T ss_pred ccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccC---------------------CCCCEEECc
Confidence 455555555533 22 444444445555555555543 2222 344444 445555555
Q ss_pred CCcchhhhhhhcccccCCCCCcceEEeecCCCCCCcCc--cccccccCCCCCCCCccEEEcCccccCccccc----cccc
Q 043298 215 GNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDMVSFP--LEDKRLGTALPLPASLTSLWIEDFPNLEHLSS----SIVD 288 (357)
Q Consensus 215 ~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~----~~~~ 288 (357)
+|. +....+ ..+..+++|+.|++++ +.+..++ ... ..+++|++|+++++ .+..++. .+..
T Consensus 80 ~N~-l~~~~~---~~~~~l~~L~~L~Ls~--N~l~~~~~~~~l-------~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~ 145 (168)
T 2ell_A 80 ENR-IFGGLD---MLAEKLPNLTHLNLSG--NKLKDISTLEPL-------KKLECLKSLDLFNC-EVTNLNDYRESVFKL 145 (168)
T ss_dssp SCC-CCSCCC---HHHHHCTTCCEEECBS--SSCCSSGGGGGG-------SSCSCCCEEECCSS-GGGTSTTHHHHHHTT
T ss_pred CCc-CchHHH---HHHhhCCCCCEEeccC--CccCcchhHHHH-------hcCCCCCEEEeeCC-cCcchHHHHHHHHHh
Confidence 432 222111 1233456666666666 3455543 222 35566777777763 4555543 4566
Q ss_pred ccccCeeccccCCCCcccC
Q 043298 289 LQNLTSLGLYNCPKLKYFP 307 (357)
Q Consensus 289 ~~~L~~L~l~~c~~l~~l~ 307 (357)
+++|++|++.+| .++.+|
T Consensus 146 l~~L~~L~l~~n-~~~~~~ 163 (168)
T 2ell_A 146 LPQLTYLDGYDR-EDQEAP 163 (168)
T ss_dssp CSSCCEETTEET-TSCBCC
T ss_pred CccCcEecCCCC-Chhhcc
Confidence 677777777764 333433
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.10 E-value=6.5e-11 Score=93.49 Aligned_cols=80 Identities=16% Similarity=0.164 Sum_probs=45.8
Q ss_pred CCcccEEEcccccCcc--ccCccccCccccceeecccCCCccccCCCCcCcccccEEEeecCCCcccccccccCCCCCce
Q 043298 112 NTSLETISIYNCENLK--ILPSGLHKLHQLREIWIRECGNLVSFPEGGLPCAKLRRLGIYDCERLEALPKGLHNLSSLQE 189 (357)
Q Consensus 112 ~~~L~~L~l~~c~~l~--~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 189 (357)
+.+++.|++++| .++ .+|..+..+++|+.|++++| .+..+ ..+..+++|+.|++++|.....+|..++.+++|++
T Consensus 16 ~~~l~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 16 PSDVKELVLDNS-RSNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGGCSEEECTTC-BCBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CccCeEEEccCC-cCChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 345677777663 444 55655566666777777664 34444 44555666666666665443335544445555555
Q ss_pred EEecC
Q 043298 190 LTIGG 194 (357)
Q Consensus 190 L~l~~ 194 (357)
|++++
T Consensus 93 L~ls~ 97 (149)
T 2je0_A 93 LNLSG 97 (149)
T ss_dssp EECTT
T ss_pred EECCC
Confidence 55555
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.10 E-value=5e-10 Score=92.43 Aligned_cols=97 Identities=16% Similarity=0.235 Sum_probs=41.4
Q ss_pred EEEecCCCCchhchhccCCCCcccEEEcccccCccccCcc--ccCccccceeecccCCCcccc-CCCCcCcccccEEEee
Q 043298 93 VLDVYGCPKLESIAERLDNNTSLETISIYNCENLKILPSG--LHKLHQLREIWIRECGNLVSF-PEGGLPCAKLRRLGIY 169 (357)
Q Consensus 93 ~L~l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~--~~~l~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~ 169 (357)
++++++ +.++.+|... +.++++|++++ +.++.++.. +..+++|+.|++++| .++.+ |..+..+++|+.|+++
T Consensus 12 ~l~~s~-~~l~~ip~~~--~~~l~~L~l~~-n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 12 TVDCTG-RGLKEIPRDI--PLHTTELLLND-NELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp EEECTT-SCCSSCCSCC--CTTCSEEECCS-CCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECC
T ss_pred EEEcCC-CCcCcCccCC--CCCCCEEECCC-CcCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECC
Confidence 344444 3444444433 22355555554 344444321 444555555555443 22222 3334444455555555
Q ss_pred cCCCcccccccccCCCCCceEEecC
Q 043298 170 DCERLEALPKGLHNLSSLQELTIGG 194 (357)
Q Consensus 170 ~~~~~~~~~~~~~~l~~L~~L~l~~ 194 (357)
+|......+..+..+++|++|++++
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~ 111 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYD 111 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCS
T ss_pred CCcCCccCHHHhcCCCCCCEEECCC
Confidence 4333222223344444444444444
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.10 E-value=3e-11 Score=119.85 Aligned_cols=100 Identities=19% Similarity=0.217 Sum_probs=48.2
Q ss_pred CcccEEEcccccCccccCccccCccccceeecccCCCccccCCCCcCcccccEEEeecCCCcccccccccCCCCCceEEe
Q 043298 113 TSLETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSFPEGGLPCAKLRRLGIYDCERLEALPKGLHNLSSLQELTI 192 (357)
Q Consensus 113 ~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 192 (357)
..|+.|++++ +.+..+|..+..+++|+.|++++| .+..+|..+..+++|+.|++++|. +..+|..++.+++|++|++
T Consensus 224 ~~L~~L~Ls~-n~l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L 300 (727)
T 4b8c_D 224 QLWHALDLSN-LQIFNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYF 300 (727)
T ss_dssp CCCCEEECTT-SCCSCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEEC
T ss_pred CCCcEEECCC-CCCCCCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEEC
Confidence 3355555554 334444444445555555555543 333444444445555555555433 2244445555555555555
Q ss_pred cC-ccCCccC-CCCCCccceEEecC
Q 043298 193 GG-ELPSLEE-DGLPTNLHSLDIWG 215 (357)
Q Consensus 193 ~~-~~~~~~~-~~~~~~L~~L~l~~ 215 (357)
++ .++.+|. .+.+++|+.|++++
T Consensus 301 ~~N~l~~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 301 FDNMVTTLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp CSSCCCCCCSSTTSCTTCCCEECTT
T ss_pred CCCCCCccChhhhcCCCccEEeCCC
Confidence 55 4444443 33345555555555
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.09 E-value=2.2e-10 Score=90.41 Aligned_cols=123 Identities=18% Similarity=0.166 Sum_probs=64.2
Q ss_pred ccccEEEeecCCCc-ccccccccCCCCCceEEecC-ccCCccCCCCCCccceEEecCCcchhh-hhhhcccccCCCCCcc
Q 043298 161 AKLRRLGIYDCERL-EALPKGLHNLSSLQELTIGG-ELPSLEEDGLPTNLHSLDIWGNMEIWK-SMIERGRGFHRFSSLG 237 (357)
Q Consensus 161 ~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~l~~~~~L~ 237 (357)
++|+.|++++|... ..+|..+..+++|+.|++++ .++.+.....+++|+.|++++|. +.. ++. .+..+++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~----~~~~l~~L~ 91 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNR-VSGGLEV----LAEKCPNLT 91 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSC-CCSCTHH----HHHHCTTCC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCc-ccchHHH----HhhhCCCCC
Confidence 34555555554322 24444445555555555555 44433334445566666666533 333 331 234566777
Q ss_pred eEEeecCCCCCCcCc--cccccccCCCCCCCCccEEEcCccccCccccc----ccccccccCeeccc
Q 043298 238 HLKIGGCDDDMVSFP--LEDKRLGTALPLPASLTSLWIEDFPNLEHLSS----SIVDLQNLTSLGLY 298 (357)
Q Consensus 238 ~L~l~~~c~~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~----~~~~~~~L~~L~l~ 298 (357)
.|++++ +.+..++ ... ..+++|++|+++++ .+..++. .+..+++|++|+++
T Consensus 92 ~L~ls~--N~i~~~~~~~~~-------~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 92 HLNLSG--NKIKDLSTIEPL-------KKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTT--SCCCSHHHHGGG-------GGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EEECCC--CcCCChHHHHHH-------hhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 777776 3444443 222 35567777777774 4555543 45666777777664
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.07 E-value=1.5e-10 Score=94.19 Aligned_cols=99 Identities=22% Similarity=0.279 Sum_probs=47.4
Q ss_pred ceEEEecCCCCchhchhccCCCCcccEEEcccccCccccCccccCccccceeecccCCCccccCCCC-cCcccccEEEee
Q 043298 91 VKVLDVYGCPKLESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSFPEGG-LPCAKLRRLGIY 169 (357)
Q Consensus 91 L~~L~l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~-~~l~~L~~L~l~ 169 (357)
|++|++++ +.++.++.......+|+.|++++ +.++.+ ..+..+++|+.|++++| .+..+|... ..+++|+.|+++
T Consensus 21 L~~L~l~~-n~l~~i~~~~~~~~~L~~L~Ls~-N~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~ 96 (176)
T 1a9n_A 21 DRELDLRG-YKIPVIENLGATLDQFDAIDFSD-NEIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELILT 96 (176)
T ss_dssp CEEEECTT-SCCCSCCCGGGGTTCCSEEECCS-SCCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCEEECC
T ss_pred ceEEEeeC-CCCchhHHhhhcCCCCCEEECCC-CCCCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCCCCEEECC
Confidence 55555555 24444433222222455555555 344444 34455555555555553 344444333 445555555555
Q ss_pred cCCCcccccc--cccCCCCCceEEecC
Q 043298 170 DCERLEALPK--GLHNLSSLQELTIGG 194 (357)
Q Consensus 170 ~~~~~~~~~~--~~~~l~~L~~L~l~~ 194 (357)
+|. ++.+|. .+..+++|+.|++++
T Consensus 97 ~N~-i~~~~~~~~l~~l~~L~~L~l~~ 122 (176)
T 1a9n_A 97 NNS-LVELGDLDPLASLKSLTYLCILR 122 (176)
T ss_dssp SCC-CCCGGGGGGGGGCTTCCEEECCS
T ss_pred CCc-CCcchhhHhhhcCCCCCEEEecC
Confidence 533 344443 444555555555554
No 129
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.05 E-value=2e-08 Score=92.50 Aligned_cols=255 Identities=11% Similarity=0.166 Sum_probs=166.3
Q ss_pred ccccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCCCCCCcccceecccCCCcceEEEecC
Q 043298 19 PSSLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKYELPATLESLEVGNLPSSVKVLDVYG 98 (357)
Q Consensus 19 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~l~~~L~~L~l~~ 98 (357)
+..++.+.+-+. ++.++.. .|.+. +|+.+.+.. .++.+ +...+.. . + |+.+.+..
T Consensus 112 ~~~l~~i~ip~~--i~~I~~~------aF~~~---~L~~i~l~~--~i~~I-~~~aF~~--~--------~-L~~i~lp~ 166 (401)
T 4fdw_A 112 LKGYNEIILPNS--VKSIPKD------AFRNS---QIAKVVLNE--GLKSI-GDMAFFN--S--------T-VQEIVFPS 166 (401)
T ss_dssp CSSCSEEECCTT--CCEECTT------TTTTC---CCSEEECCT--TCCEE-CTTTTTT--C--------C-CCEEECCT
T ss_pred cCCccEEEECCc--cCEehHh------hcccC---CccEEEeCC--CccEE-CHHhcCC--C--------C-ceEEEeCC
Confidence 467777777653 6777776 66653 588888865 36776 5442221 1 2 66666654
Q ss_pred CCCchhchhcc-CCCCcccEEEcccccCccccCccccCccccceeecccCCCccccCC-CCcCcccccEEEeecCCCccc
Q 043298 99 CPKLESIAERL-DNNTSLETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSFPE-GGLPCAKLRRLGIYDCERLEA 176 (357)
Q Consensus 99 c~~~~~~~~~~-~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~ 176 (357)
.++.++... ..+.+|+.+++.. +.++.++.....+.+|+.+.+.. .++.++. .+..+++|+.+.+.. .++.
T Consensus 167 --~l~~I~~~aF~~c~~L~~l~l~~-n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~--~l~~ 239 (401)
T 4fdw_A 167 --TLEQLKEDIFYYCYNLKKADLSK-TKITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPE--NVST 239 (401)
T ss_dssp --TCCEECSSTTTTCTTCCEEECTT-SCCSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCT--TCCE
T ss_pred --CccEehHHHhhCcccCCeeecCC-CcceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEecCC--CccC
Confidence 455554433 3456688888876 66777766555567888888864 3666654 456678888888875 3455
Q ss_pred ccc-cccCCCCCceEEecCccCCccC--CCCCCccceEEecCCcch----hhhhhhcccccCCCCCcceEEeecCCCCCC
Q 043298 177 LPK-GLHNLSSLQELTIGGELPSLEE--DGLPTNLHSLDIWGNMEI----WKSMIERGRGFHRFSSLGHLKIGGCDDDMV 249 (357)
Q Consensus 177 ~~~-~~~~l~~L~~L~l~~~~~~~~~--~~~~~~L~~L~l~~~~~l----~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~ 249 (357)
++. +|.+ .+|+.+.+...++.++. +..+++|+.+.+.++... ..++. ..|.++++|+.+.+.. .+.
T Consensus 240 I~~~aF~~-~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~---~aF~~c~~L~~l~l~~---~i~ 312 (401)
T 4fdw_A 240 IGQEAFRE-SGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHP---YCLEGCPKLARFEIPE---SIR 312 (401)
T ss_dssp ECTTTTTT-CCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECT---TTTTTCTTCCEECCCT---TCC
T ss_pred cccccccc-CCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECH---HHhhCCccCCeEEeCC---ceE
Confidence 543 4555 67888888665555544 444678888888763221 12333 3688899999999886 355
Q ss_pred cCccccccccCCCCCCCCccEEEcCccccCcccc-cccccccccCeeccccCCCCcccCCCC---CccCCceEEecC
Q 043298 250 SFPLEDKRLGTALPLPASLTSLWIEDFPNLEHLS-SSIVDLQNLTSLGLYNCPKLKYFPEKG---LPSSLLLLWIEG 322 (357)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~-~~~~~~~~L~~L~l~~c~~l~~l~~~~---~~~~L~~L~i~~ 322 (357)
.++... +..+.+|+.+.+.+ .++.+. ..|.++ +|+.+.+.+ +.+..++... +...++.|.+..
T Consensus 313 ~I~~~a------F~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~-n~~~~l~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 313 ILGQGL------LGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEG-TTPPQVFEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp EECTTT------TTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECC-SSCCBCCCSSCCCSCTTCCEEEECG
T ss_pred EEhhhh------hcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcC-CCCcccccccccCCCCCccEEEeCH
Confidence 565433 46778999999964 467775 456778 999999988 4566665533 345788898865
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.03 E-value=1.7e-09 Score=89.32 Aligned_cols=121 Identities=22% Similarity=0.324 Sum_probs=80.1
Q ss_pred ccEEEEecCCCccccccCCCCCCcccceecccCCCcceEEEecCCCCchhchhccCCCCcccEEEcccccCccccC-ccc
Q 043298 55 LEELFVFNCDSLTCIFSKYELPATLESLEVGNLPSSVKVLDVYGCPKLESIAERLDNNTSLETISIYNCENLKILP-SGL 133 (357)
Q Consensus 55 L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~l~~~L~~L~l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~~~ 133 (357)
-+++++++ +.++.+ |.. .+ +. |++|++++ +.++.+|..+....+|+.|++++ +.++.++ ..+
T Consensus 12 ~~~l~~~~-~~l~~i-p~~-~~-----------~~-l~~L~L~~-n~i~~ip~~~~~l~~L~~L~Ls~-N~i~~i~~~~f 74 (193)
T 2wfh_A 12 DTVVRCSN-KGLKVL-PKG-IP-----------RD-VTELYLDG-NQFTLVPKELSNYKHLTLIDLSN-NRISTLSNQSF 74 (193)
T ss_dssp TTEEECTT-SCCSSC-CSC-CC-----------TT-CCEEECCS-SCCCSCCGGGGGCTTCCEEECCS-SCCCCCCTTTT
T ss_pred CCEEEcCC-CCCCcC-CCC-CC-----------CC-CCEEECCC-CcCchhHHHhhcccCCCEEECCC-CcCCEeCHhHc
Confidence 35666665 456665 532 11 12 77777777 56677765554556688888877 6676665 346
Q ss_pred cCccccceeecccCCCccccCC-CCcCcccccEEEeecCCCcccccc-cccCCCCCceEEecC
Q 043298 134 HKLHQLREIWIRECGNLVSFPE-GGLPCAKLRRLGIYDCERLEALPK-GLHNLSSLQELTIGG 194 (357)
Q Consensus 134 ~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~ 194 (357)
.++++|+.|++++| .+..++. .+..+++|+.|++++|. ++.++. .+..+++|+.|++.+
T Consensus 75 ~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 75 SNMTQLLTLILSYN-RLRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp TTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCS
T ss_pred cCCCCCCEEECCCC-ccCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCC
Confidence 77888888888874 4555553 56677888888888754 444443 577788888888876
No 131
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.02 E-value=3.6e-08 Score=90.80 Aligned_cols=231 Identities=13% Similarity=0.167 Sum_probs=157.7
Q ss_pred CccEEEEecCCCccccccCCCCCCcccceecccCCCcceEEEecCCCCchhchhccCCCCcccEEEcccccCccccC-cc
Q 043298 54 LLEELFVFNCDSLTCIFSKYELPATLESLEVGNLPSSVKVLDVYGCPKLESIAERLDNNTSLETISIYNCENLKILP-SG 132 (357)
Q Consensus 54 ~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~l~~~L~~L~l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~~ 132 (357)
.++.+.+-. .++.+ +...+- . .+ |+.+.+.. .++.++.....-.+|+.+.+.. .++.++ ..
T Consensus 114 ~l~~i~ip~--~i~~I-~~~aF~---------~-~~-L~~i~l~~--~i~~I~~~aF~~~~L~~i~lp~--~l~~I~~~a 175 (401)
T 4fdw_A 114 GYNEIILPN--SVKSI-PKDAFR---------N-SQ-IAKVVLNE--GLKSIGDMAFFNSTVQEIVFPS--TLEQLKEDI 175 (401)
T ss_dssp SCSEEECCT--TCCEE-CTTTTT---------T-CC-CSEEECCT--TCCEECTTTTTTCCCCEEECCT--TCCEECSST
T ss_pred CccEEEECC--ccCEe-hHhhcc---------c-CC-ccEEEeCC--CccEECHHhcCCCCceEEEeCC--CccEehHHH
Confidence 566666654 45555 443221 1 12 67777765 3666665542223599998875 566665 45
Q ss_pred ccCccccceeecccCCCccccCCCCcCcccccEEEeecCCCccccc-ccccCCCCCceEEecCccCCccCCCC-CCccce
Q 043298 133 LHKLHQLREIWIRECGNLVSFPEGGLPCAKLRRLGIYDCERLEALP-KGLHNLSSLQELTIGGELPSLEEDGL-PTNLHS 210 (357)
Q Consensus 133 ~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~L~~ 210 (357)
+.++++|+.+++.. +.++.++.....+++|+.+.+.+ .++.++ .+|.++++|+.+.+...++.++...+ -.+|+.
T Consensus 176 F~~c~~L~~l~l~~-n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~ 252 (401)
T 4fdw_A 176 FYYCYNLKKADLSK-TKITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGITT 252 (401)
T ss_dssp TTTCTTCCEEECTT-SCCSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSE
T ss_pred hhCcccCCeeecCC-CcceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEecCCCccCccccccccCCccE
Confidence 78899999999987 46788887665678999999974 355554 47889999999999774444443221 268999
Q ss_pred EEecCCcchhhhhhhcccccCCCCCcceEEeecCCCCCC-----cCccccccccCCCCCCCCccEEEcCccccCccccc-
Q 043298 211 LDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDMV-----SFPLEDKRLGTALPLPASLTSLWIEDFPNLEHLSS- 284 (357)
Q Consensus 211 L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~-----~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~- 284 (357)
+.+.. .++.+... .|.++++|+.+.+.+ +... .++. .++..+++|+.+.+.+ .++.++.
T Consensus 253 i~lp~--~i~~I~~~---aF~~c~~L~~l~l~~--~~~~~~~~~~I~~------~aF~~c~~L~~l~l~~--~i~~I~~~ 317 (401)
T 4fdw_A 253 VKLPN--GVTNIASR---AFYYCPELAEVTTYG--STFNDDPEAMIHP------YCLEGCPKLARFEIPE--SIRILGQG 317 (401)
T ss_dssp EEEET--TCCEECTT---TTTTCTTCCEEEEES--SCCCCCTTCEECT------TTTTTCTTCCEECCCT--TCCEECTT
T ss_pred EEeCC--CccEEChh---HhhCCCCCCEEEeCC--ccccCCcccEECH------HHhhCCccCCeEEeCC--ceEEEhhh
Confidence 98854 45555543 688999999999987 2222 2333 2357888999999984 5777754
Q ss_pred ccccccccCeeccccCCCCcccCCCCC--ccCCceEEecCC
Q 043298 285 SIVDLQNLTSLGLYNCPKLKYFPEKGL--PSSLLLLWIEGC 323 (357)
Q Consensus 285 ~~~~~~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~c 323 (357)
.|.++.+|+.+.+.. .++.+....+ + +|+.|++.+.
T Consensus 318 aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 318 LLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp TTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS
T ss_pred hhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC
Confidence 578889999999864 4777766544 4 8999999764
No 132
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.02 E-value=1.6e-09 Score=89.38 Aligned_cols=101 Identities=18% Similarity=0.289 Sum_probs=66.8
Q ss_pred ceEEEecCCCCchhchhc--cCCCCcccEEEcccccCcccc-CccccCccccceeecccCCCccccCC-CCcCcccccEE
Q 043298 91 VKVLDVYGCPKLESIAER--LDNNTSLETISIYNCENLKIL-PSGLHKLHQLREIWIRECGNLVSFPE-GGLPCAKLRRL 166 (357)
Q Consensus 91 L~~L~l~~c~~~~~~~~~--~~~~~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L 166 (357)
|++|++++ +.++.++.. ++.+.+|++|++++ +.++.+ |..+..+++|+.|++++| .+..++. .+..+++|+.|
T Consensus 31 l~~L~l~~-n~i~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L 107 (192)
T 1w8a_A 31 TTELLLND-NELGRISSDGLFGRLPHLVKLELKR-NQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLKTL 107 (192)
T ss_dssp CSEEECCS-CCCCSBCCSCSGGGCTTCCEEECCS-SCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTCCEE
T ss_pred CCEEECCC-CcCCccCCccccccCCCCCEEECCC-CCCCCcCHhHcCCcccCCEEECCCC-cCCccCHHHhcCCCCCCEE
Confidence 66777776 456655542 33455577777777 556655 556677778888888774 4454443 46667788888
Q ss_pred EeecCCCcccccccccCCCCCceEEecC
Q 043298 167 GIYDCERLEALPKGLHNLSSLQELTIGG 194 (357)
Q Consensus 167 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 194 (357)
++++|+.....|..+..+++|++|++++
T Consensus 108 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 108 NLYDNQISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp ECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred ECCCCcCCeeCHHHhhcCCCCCEEEeCC
Confidence 8887665555566777777777777766
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.97 E-value=6.9e-10 Score=90.20 Aligned_cols=35 Identities=14% Similarity=0.173 Sum_probs=14.3
Q ss_pred CccccceeecccCCCccccCCCCcCcccccEEEeec
Q 043298 135 KLHQLREIWIRECGNLVSFPEGGLPCAKLRRLGIYD 170 (357)
Q Consensus 135 ~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~ 170 (357)
.+++|+.|++++| .+..++......++|+.|++++
T Consensus 17 ~~~~L~~L~l~~n-~l~~i~~~~~~~~~L~~L~Ls~ 51 (176)
T 1a9n_A 17 NAVRDRELDLRGY-KIPVIENLGATLDQFDAIDFSD 51 (176)
T ss_dssp CTTSCEEEECTTS-CCCSCCCGGGGTTCCSEEECCS
T ss_pred CcCCceEEEeeCC-CCchhHHhhhcCCCCCEEECCC
Confidence 3445555555543 3333332111122445555444
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.97 E-value=5.1e-09 Score=85.04 Aligned_cols=118 Identities=21% Similarity=0.279 Sum_probs=51.9
Q ss_pred EEEecCCCCchhchhccCCCCcccEEEcccccCccccCcc-ccCccccceeecccCCCccccCCC-CcCcccccEEEeec
Q 043298 93 VLDVYGCPKLESIAERLDNNTSLETISIYNCENLKILPSG-LHKLHQLREIWIRECGNLVSFPEG-GLPCAKLRRLGIYD 170 (357)
Q Consensus 93 ~L~l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~~ 170 (357)
.+++++ +.++.+|... +.+|+.|++++ +.++.++.. +..+++|+.|++++| .+..++.. +..+++|+.|++++
T Consensus 11 ~l~~~~-~~l~~~p~~~--~~~l~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 11 EIRCNS-KGLTSVPTGI--PSSATRLELES-NKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp EEECCS-SCCSSCCTTC--CTTCSEEECCS-SCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred EEEecC-CCCccCCCCC--CCCCcEEEeCC-CcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCC
Confidence 444444 3444444332 23455555555 344444332 345555555555553 33444332 34455555555555
Q ss_pred CCCcccccccccCCCCCceEEecC-ccCCccC--CCCCCccceEEecC
Q 043298 171 CERLEALPKGLHNLSSLQELTIGG-ELPSLEE--DGLPTNLHSLDIWG 215 (357)
Q Consensus 171 ~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~--~~~~~~L~~L~l~~ 215 (357)
|......+..+..+++|++|++++ .++.++. ...+++|+.|++++
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 133 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 133 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecC
Confidence 332222222344455555555544 3333333 12234444444444
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.89 E-value=5.1e-10 Score=111.01 Aligned_cols=107 Identities=20% Similarity=0.214 Sum_probs=54.8
Q ss_pred CccccCccccceeecccCCCccccCCCCcCcccccEEEeecCCCcccccccccCCCCCceEEecC-ccCCccC-CCCCCc
Q 043298 130 PSGLHKLHQLREIWIRECGNLVSFPEGGLPCAKLRRLGIYDCERLEALPKGLHNLSSLQELTIGG-ELPSLEE-DGLPTN 207 (357)
Q Consensus 130 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~-~~~~~~ 207 (357)
+..+..+++|+.|++++| .+..+|..+..+++|+.|++++|. +..+|..|+.+++|+.|++++ .++.+|. .+.+++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~ 294 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQ 294 (727)
T ss_dssp -----CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTT
T ss_pred hhhhccCCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCC
Confidence 444556666666666663 344566555566666666666643 335666666666666666665 4444443 233445
Q ss_pred cceEEecCCcchhhhhhhcccccCCCCCcceEEeec
Q 043298 208 LHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGG 243 (357)
Q Consensus 208 L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~ 243 (357)
|+.|++++| .+..++ ..+..+++|+.|++++
T Consensus 295 L~~L~L~~N-~l~~lp----~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 295 LKYFYFFDN-MVTTLP----WEFGNLCNLQFLGVEG 325 (727)
T ss_dssp CSEEECCSS-CCCCCC----SSTTSCTTCCCEECTT
T ss_pred CCEEECCCC-CCCccC----hhhhcCCCccEEeCCC
Confidence 555555542 333333 1244444555555544
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.89 E-value=1.4e-08 Score=82.37 Aligned_cols=80 Identities=21% Similarity=0.297 Sum_probs=40.8
Q ss_pred ccEEEcccccCccccCccccCccccceeecccCCCccccCC-CCcCcccccEEEeecCCCccccc-ccccCCCCCceEEe
Q 043298 115 LETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSFPE-GGLPCAKLRRLGIYDCERLEALP-KGLHNLSSLQELTI 192 (357)
Q Consensus 115 L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l 192 (357)
.+.+++++ +.++.+|..+ .++|+.|+++++ .+..++. .+..+++|+.|++++|. ++.++ ..+..+++|++|++
T Consensus 9 ~~~l~~~~-~~l~~~p~~~--~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 9 GTEIRCNS-KGLTSVPTGI--PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp TTEEECCS-SCCSSCCTTC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEecC-CCCccCCCCC--CCCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEEC
Confidence 45566655 5566555433 246666666663 3444443 23455666666666543 33333 23455555555555
Q ss_pred cC-ccCCc
Q 043298 193 GG-ELPSL 199 (357)
Q Consensus 193 ~~-~~~~~ 199 (357)
++ .++.+
T Consensus 84 ~~N~l~~~ 91 (177)
T 2o6r_A 84 HENKLQSL 91 (177)
T ss_dssp CSSCCCCC
T ss_pred CCCCcccc
Confidence 54 44333
No 137
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.84 E-value=3.7e-07 Score=83.87 Aligned_cols=273 Identities=14% Similarity=0.110 Sum_probs=140.3
Q ss_pred cccccccc--ccccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCC--CCCCcccceecc-
Q 043298 11 TYIAAVQL--PSSLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKY--ELPATLESLEVG- 85 (357)
Q Consensus 11 ~~~~~~~~--~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~--~~~~~L~~L~l~- 85 (357)
+++...+| +.+|+++.+.. +++.++.. +|..+. +|+.+++.. +++.+ +.. ..+.+|+.+.+.
T Consensus 60 tsIg~~AF~~c~~L~~i~lp~--~i~~I~~~------aF~~c~--~L~~i~lp~--~l~~I-~~~aF~~c~~L~~i~~p~ 126 (394)
T 4fs7_A 60 VSIGYAAFQGCRKVTEIKIPS--TVREIGEF------AFENCS--KLEIINIPD--SVKMI-GRCTFSGCYALKSILLPL 126 (394)
T ss_dssp EEECTTTTTTCTTEEEEECCT--TCCEECTT------TTTTCT--TCCEECCCT--TCCEE-CTTTTTTCTTCCCCCCCT
T ss_pred eEhHHHHhhCCCCceEEEeCC--CccCcchh------HhhCCC--CCcEEEeCC--CceEc-cchhhcccccchhhcccC
Confidence 34444444 56788887753 36777766 677777 788887754 35555 333 334445443332
Q ss_pred --------cCCCc-ceEEEecCCCCchhchhcc-CCCCcccEEEcccccCccccC-ccccCccccceeecccCCCccccC
Q 043298 86 --------NLPSS-VKVLDVYGCPKLESIAERL-DNNTSLETISIYNCENLKILP-SGLHKLHQLREIWIRECGNLVSFP 154 (357)
Q Consensus 86 --------~l~~~-L~~L~l~~c~~~~~~~~~~-~~~~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~~~~l~~~~ 154 (357)
.+... +....+. .....+.... ..+.+|+.+.+.. .+..++ ..+.++++|+.+.+..+ ++.+.
T Consensus 127 ~l~~i~~~aF~~~~~~~~~~~--~~~~~i~~~aF~~c~~L~~i~l~~--~~~~I~~~~F~~c~~L~~i~l~~~--~~~I~ 200 (394)
T 4fs7_A 127 MLKSIGVEAFKGCDFKEITIP--EGVTVIGDEAFATCESLEYVSLPD--SMETLHNGLFSGCGKLKSIKLPRN--LKIIR 200 (394)
T ss_dssp TCCEECTTTTTTCCCSEEECC--TTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCBCCCCTT--CCEEC
T ss_pred ceeeecceeeecccccccccC--ccccccchhhhcccCCCcEEecCC--ccceeccccccCCCCceEEEcCCC--ceEeC
Confidence 11110 1111111 1112222211 2345577777653 233333 33456677777766442 33333
Q ss_pred C-CCcCcccccEEEeecCC--------------------Cccccc-ccccCCCCCceEEecCccCCccC--CCCCCccce
Q 043298 155 E-GGLPCAKLRRLGIYDCE--------------------RLEALP-KGLHNLSSLQELTIGGELPSLEE--DGLPTNLHS 210 (357)
Q Consensus 155 ~-~~~~l~~L~~L~l~~~~--------------------~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~L~~ 210 (357)
. .+..++.|+.+.+.... .+..+. ..+..+..++.+.+......+.. ...+..++.
T Consensus 201 ~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~ 280 (394)
T 4fs7_A 201 DYCFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKK 280 (394)
T ss_dssp TTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCE
T ss_pred chhhccccccceeecCCCceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccce
Confidence 2 33444455544443211 111111 23444555555555441111111 233445555
Q ss_pred EEecCCcchhhhhhhcccccCCCCCcceEEeecCCCCCCcCccccccccCCCCCCCCccEEEcCccccCcccc-cccccc
Q 043298 211 LDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLEHLS-SSIVDL 289 (357)
Q Consensus 211 L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~-~~~~~~ 289 (357)
+...... ++. ..+..+.+|+.+.+.. .+..++... +..+.+|+.+++.+ .++.+. ..|.++
T Consensus 281 ~~~~~~~----i~~---~~F~~~~~L~~i~l~~---~i~~I~~~a------F~~c~~L~~i~lp~--~v~~I~~~aF~~c 342 (394)
T 4fs7_A 281 VIYGSVI----VPE---KTFYGCSSLTEVKLLD---SVKFIGEEA------FESCTSLVSIDLPY--LVEEIGKRSFRGC 342 (394)
T ss_dssp EEECSSE----ECT---TTTTTCTTCCEEEECT---TCCEECTTT------TTTCTTCCEECCCT--TCCEECTTTTTTC
T ss_pred eccCcee----ecc---cccccccccccccccc---ccceechhh------hcCCCCCCEEEeCC--cccEEhHHhccCC
Confidence 5443311 111 2456777788877765 244444432 46778889888864 466675 456788
Q ss_pred cccCeeccccCCCCcccCCCCC--ccCCceEEecC
Q 043298 290 QNLTSLGLYNCPKLKYFPEKGL--PSSLLLLWIEG 322 (357)
Q Consensus 290 ~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~ 322 (357)
.+|+.+.+.. .++.+....+ +.+|+.+++..
T Consensus 343 ~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 343 TSLSNINFPL--SLRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEG
T ss_pred CCCCEEEECc--cccEehHHHhhCCCCCCEEEECC
Confidence 8899888864 3777766544 57888888864
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.75 E-value=3.3e-10 Score=94.02 Aligned_cols=110 Identities=17% Similarity=0.253 Sum_probs=57.3
Q ss_pred chhchhccCCCCcccEEEcccccCccccCccccCccccceeecccCCCccccCCCCcCcccccEEEeecCCCcccccccc
Q 043298 102 LESIAERLDNNTSLETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSFPEGGLPCAKLRRLGIYDCERLEALPKGL 181 (357)
Q Consensus 102 ~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 181 (357)
++.+|..++.+.+|++|++++ +.++.+| .+..+++|+.|++++| .+..+|.....+++|+.|++++|. +..+| .+
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~-n~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~~ 111 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALST-NNIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQ-IASLS-GI 111 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSE-EEESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEEE-CCCHH-HH
T ss_pred HhhhhHHHhcCCCCCEEECCC-CCCcccc-ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCCc-CCcCC-cc
Confidence 333443332334466666665 4455555 5555666666666653 344555444445566666666643 33343 45
Q ss_pred cCCCCCceEEecC-ccCCccC---CCCCCccceEEecCC
Q 043298 182 HNLSSLQELTIGG-ELPSLEE---DGLPTNLHSLDIWGN 216 (357)
Q Consensus 182 ~~l~~L~~L~l~~-~~~~~~~---~~~~~~L~~L~l~~~ 216 (357)
..+++|++|++++ .++.++. ...+++|+.|++++|
T Consensus 112 ~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 112 EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred ccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCC
Confidence 5556666666655 4443322 334455666666654
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.73 E-value=1.7e-10 Score=95.82 Aligned_cols=123 Identities=17% Similarity=0.134 Sum_probs=69.0
Q ss_pred ccEEEcccc-cCccccCccccCccccceeecccCCCccccCCCCcCcccccEEEeecCCCcccccccccCCCCCceEEec
Q 043298 115 LETISIYNC-ENLKILPSGLHKLHQLREIWIRECGNLVSFPEGGLPCAKLRRLGIYDCERLEALPKGLHNLSSLQELTIG 193 (357)
Q Consensus 115 L~~L~l~~c-~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 193 (357)
++...+.+. +.++.+|..+..+++|+.|++++| .+..+| .+..+++|+.|++++|. +..+|..+..+++|++|+++
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWIS 101 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECc
Confidence 555555542 245555556777888888888774 456666 56667788888887753 44566555556666666666
Q ss_pred C-ccCCccCCCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeec
Q 043298 194 G-ELPSLEEDGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGG 243 (357)
Q Consensus 194 ~-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~ 243 (357)
+ .++.++....+++|+.|++++| .+..++.. ..+..+++|++|++++
T Consensus 102 ~N~l~~l~~~~~l~~L~~L~l~~N-~i~~~~~~--~~l~~l~~L~~L~l~~ 149 (198)
T 1ds9_A 102 YNQIASLSGIEKLVNLRVLYMSNN-KITNWGEI--DKLAALDKLEDLLLAG 149 (198)
T ss_dssp EEECCCHHHHHHHHHSSEEEESEE-ECCCHHHH--HHHTTTTTCSEEEECS
T ss_pred CCcCCcCCccccCCCCCEEECCCC-cCCchhHH--HHHhcCCCCCEEEecC
Confidence 6 5544443333445555555552 23322210 1234444555555544
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.70 E-value=5.5e-08 Score=78.41 Aligned_cols=98 Identities=23% Similarity=0.421 Sum_probs=51.3
Q ss_pred ceEEEecCCCCchhchhccCCCCcccEEEcccccCcccc-CccccCccccceeecccCCCccccCCC-CcCcccccEEEe
Q 043298 91 VKVLDVYGCPKLESIAERLDNNTSLETISIYNCENLKIL-PSGLHKLHQLREIWIRECGNLVSFPEG-GLPCAKLRRLGI 168 (357)
Q Consensus 91 L~~L~l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l 168 (357)
.+++++++ +.++.+|... +.+|++|++++ +.++.+ +..+.++++|+.|++++| .+..++.. +..+++|+.|++
T Consensus 11 ~~~l~~s~-n~l~~ip~~~--~~~l~~L~L~~-N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 11 GTTVDCSG-KSLASVPTGI--PTTTQVLYLYD-NQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp TTEEECTT-SCCSSCCSCC--CTTCSEEECCS-SCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEeCC-CCcCccCccC--CCCCcEEEcCC-CcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEEC
Confidence 34555555 4555555543 34466666665 455554 334555666666666653 44455443 345566666666
Q ss_pred ecCCCcccccc-cccCCCCCceEEecC
Q 043298 169 YDCERLEALPK-GLHNLSSLQELTIGG 194 (357)
Q Consensus 169 ~~~~~~~~~~~-~~~~l~~L~~L~l~~ 194 (357)
++|+ ++.++. .+..+++|++|++++
T Consensus 86 ~~N~-l~~~~~~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 86 NDNQ-LKSIPRGAFDNLKSLTHIWLLN 111 (170)
T ss_dssp CSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCc-cCEeCHHHhcCCCCCCEEEeCC
Confidence 6543 333332 355555555555544
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.69 E-value=7.5e-08 Score=77.91 Aligned_cols=97 Identities=21% Similarity=0.399 Sum_probs=53.8
Q ss_pred eEEEecCCCCchhchhccCCCCcccEEEcccccCcccc-CccccCccccceeecccCCCccccCCC-CcCcccccEEEee
Q 043298 92 KVLDVYGCPKLESIAERLDNNTSLETISIYNCENLKIL-PSGLHKLHQLREIWIRECGNLVSFPEG-GLPCAKLRRLGIY 169 (357)
Q Consensus 92 ~~L~l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l-~~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~l~~L~~L~l~ 169 (357)
+.+++++ +.++.+|... +.+|+.|++++ +.++.+ |..+..+++|+.|++++| .+..+|.. +..+++|+.|+++
T Consensus 15 ~~l~~~~-n~l~~iP~~~--~~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 15 TLVNCQN-IRLASVPAGI--PTDKQRLWLNN-NQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SEEECCS-SCCSSCCSCC--CTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred cEEEeCC-CCCCccCCCc--CCCCcEEEeCC-CCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECC
Confidence 3455555 4555665543 34466666666 455554 344556666666666663 45555543 3456666666666
Q ss_pred cCCCcccccc-cccCCCCCceEEecC
Q 043298 170 DCERLEALPK-GLHNLSSLQELTIGG 194 (357)
Q Consensus 170 ~~~~~~~~~~-~~~~l~~L~~L~l~~ 194 (357)
+|. ++.+|. .+..+++|++|++.+
T Consensus 90 ~N~-l~~l~~~~~~~l~~L~~L~L~~ 114 (174)
T 2r9u_A 90 DNH-LKSIPRGAFDNLKSLTHIYLYN 114 (174)
T ss_dssp SSC-CCCCCTTTTTTCTTCSEEECCS
T ss_pred CCc-cceeCHHHhccccCCCEEEeCC
Confidence 633 334433 355566666666555
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.63 E-value=1.7e-07 Score=75.43 Aligned_cols=97 Identities=19% Similarity=0.297 Sum_probs=57.6
Q ss_pred ccEEEcccccCccccCccccCccccceeecccCCCcccc-CCCCcCcccccEEEeecCCCcccccc-cccCCCCCceEEe
Q 043298 115 LETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSF-PEGGLPCAKLRRLGIYDCERLEALPK-GLHNLSSLQELTI 192 (357)
Q Consensus 115 L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l 192 (357)
.+.+++++ +.++++|..+ .++|+.|+++++ .+..+ |..+..+++|++|++++|. ++.++. .+..+++|++|++
T Consensus 11 ~~~l~~s~-n~l~~ip~~~--~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 11 GTTVDCSG-KSLASVPTGI--PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp TTEEECTT-SCCSSCCSCC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEeCC-CCcCccCccC--CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEEC
Confidence 56777777 6677777554 366777777763 44554 3445666777777777644 334433 4566666666666
Q ss_pred cC-ccCCccC--CCCCCccceEEecCC
Q 043298 193 GG-ELPSLEE--DGLPTNLHSLDIWGN 216 (357)
Q Consensus 193 ~~-~~~~~~~--~~~~~~L~~L~l~~~ 216 (357)
++ .++.++. ...+++|+.|++++|
T Consensus 86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 86 NDNQLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCccCEeCHHHhcCCCCCCEEEeCCC
Confidence 66 5555543 233455555555553
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.61 E-value=2.2e-07 Score=75.17 Aligned_cols=96 Identities=18% Similarity=0.322 Sum_probs=51.7
Q ss_pred ccEEEcccccCccccCccccCccccceeecccCCCcccc-CCCCcCcccccEEEeecCCCcccccc-cccCCCCCceEEe
Q 043298 115 LETISIYNCENLKILPSGLHKLHQLREIWIRECGNLVSF-PEGGLPCAKLRRLGIYDCERLEALPK-GLHNLSSLQELTI 192 (357)
Q Consensus 115 L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l 192 (357)
-+.+++++ +.++++|..+. ++|+.|+++++ .+..+ |..+..+++|+.|++++| .++.+|. .+..+++|++|++
T Consensus 14 ~~~l~~~~-n~l~~iP~~~~--~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L 88 (174)
T 2r9u_A 14 QTLVNCQN-IRLASVPAGIP--TDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDL 88 (174)
T ss_dssp SSEEECCS-SCCSSCCSCCC--TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CcEEEeCC-CCCCccCCCcC--CCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEEC
Confidence 35666666 56666665543 56666666663 34444 334555666666666664 3344443 3455666666666
Q ss_pred cC-ccCCccC--CCCCCccceEEecC
Q 043298 193 GG-ELPSLEE--DGLPTNLHSLDIWG 215 (357)
Q Consensus 193 ~~-~~~~~~~--~~~~~~L~~L~l~~ 215 (357)
++ .++.++. ...+++|+.|++++
T Consensus 89 ~~N~l~~l~~~~~~~l~~L~~L~L~~ 114 (174)
T 2r9u_A 89 NDNHLKSIPRGAFDNLKSLTHIYLYN 114 (174)
T ss_dssp CSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred CCCccceeCHHHhccccCCCEEEeCC
Confidence 55 4444443 22344455555544
No 144
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.55 E-value=3.4e-06 Score=77.37 Aligned_cols=256 Identities=12% Similarity=0.127 Sum_probs=145.9
Q ss_pred ccccccccc--c-cccceeecccccccccccccccccccCCCCCCcCCccEEEEecC--CCccccccCC--CCCCcccce
Q 043298 10 LTYIAAVQL--P-SSLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNC--DSLTCIFSKY--ELPATLESL 82 (357)
Q Consensus 10 l~~~~~~~~--~-~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c--~~l~~~~~~~--~~~~~L~~L 82 (357)
++.+...+| + ..|+.+.+-.. ++.+... +|.++. +|+.+.+... ..++.+ +.. ..+.+|+.+
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s--vt~Ig~~------AF~~C~--~L~~i~~~~n~p~~l~~I-g~~aF~~c~~L~~i 119 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT--VTEIGSN------AFYNCT--SLKRVTIQDNKPSCVKKI-GRQAFMFCSELTDI 119 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT--CCEECTT------TTTTCT--TCCEEEEGGGCCCCCCEE-CTTTTTTCTTCCBC
T ss_pred eeEcCHhhccCCCCcCEEEEECCC--eeEEhHH------HhhCCc--cCceEeecCCCCCeeeEe-chhhchhcccceee
Confidence 445555555 3 34888888643 7777777 788888 8888888652 345665 433 334555555
Q ss_pred ecc------------cCCCcceEEEecCCCCchhchhcc-CCCCcccEEEcccccCccccCccccCccccceeecccCCC
Q 043298 83 EVG------------NLPSSVKVLDVYGCPKLESIAERL-DNNTSLETISIYNCENLKILPSGLHKLHQLREIWIRECGN 149 (357)
Q Consensus 83 ~l~------------~l~~~L~~L~l~~c~~~~~~~~~~-~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~l~~~~~ 149 (357)
.+. .+.+ |+.+.+.. .++.++... ..+..|+.+.+.. .++.+........+|+.+.+...
T Consensus 120 ~~~~~~~~I~~~aF~~c~~-L~~i~lp~--~~~~I~~~~F~~c~~L~~i~~~~--~~~~I~~~aF~~~~l~~i~ip~~-- 192 (394)
T 4gt6_A 120 PILDSVTEIDSEAFHHCEE-LDTVTIPE--GVTSVADGMFSYCYSLHTVTLPD--SVTAIEERAFTGTALTQIHIPAK-- 192 (394)
T ss_dssp GGGTTCSEECTTTTTTCTT-CCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCCCSEEEECTT--
T ss_pred ccCCccceehhhhhhhhcc-cccccccc--eeeeecccceecccccccccccc--eeeEeccccccccceeEEEECCc--
Confidence 443 4555 77777654 233333322 2344566666643 24444333223344555555321
Q ss_pred ccccC-CCCcCcccccEEEeecC-----------------------------------CCcccc-cccccCCCCCceEEe
Q 043298 150 LVSFP-EGGLPCAKLRRLGIYDC-----------------------------------ERLEAL-PKGLHNLSSLQELTI 192 (357)
Q Consensus 150 l~~~~-~~~~~l~~L~~L~l~~~-----------------------------------~~~~~~-~~~~~~l~~L~~L~l 192 (357)
+..+. ..+..+.+++....... ..+..+ ..+|..+++|+.+.+
T Consensus 193 ~~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~l 272 (394)
T 4gt6_A 193 VTRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKM 272 (394)
T ss_dssp CCEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEEC
T ss_pred ccccccchhhhccccceecccccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEec
Confidence 11111 11222223332221110 112222 236777888999988
Q ss_pred cCccCCccC--CCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeecCCCCCCcCccccccccCCCCCCCCccE
Q 043298 193 GGELPSLEE--DGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDMVSFPLEDKRLGTALPLPASLTS 270 (357)
Q Consensus 193 ~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~ 270 (357)
...+..+.. +..++.|+.+.+.. .++.++. ..|.++.+|+.+.+.. .++.+.... +..+.+|++
T Consensus 273 p~~~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~---~aF~~c~~L~~i~lp~---~v~~I~~~a------F~~C~~L~~ 338 (394)
T 4gt6_A 273 PDSVVSIGTGAFMNCPALQDIEFSS--RITELPE---SVFAGCISLKSIDIPE---GITQILDDA------FAGCEQLER 338 (394)
T ss_dssp CTTCCEECTTTTTTCTTCCEEECCT--TCCEECT---TTTTTCTTCCEEECCT---TCCEECTTT------TTTCTTCCE
T ss_pred ccccceecCcccccccccccccCCC--cccccCc---eeecCCCCcCEEEeCC---cccEehHhH------hhCCCCCCE
Confidence 763333433 34467888888853 4555554 3688899999999976 355555433 567889999
Q ss_pred EEcCccccCcccc-cccccccccCeecccc
Q 043298 271 LWIEDFPNLEHLS-SSIVDLQNLTSLGLYN 299 (357)
Q Consensus 271 L~l~~c~~l~~i~-~~~~~~~~L~~L~l~~ 299 (357)
+.+-. .++.+. ..|.+|.+|+.+++.+
T Consensus 339 i~ip~--sv~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 339 IAIPS--SVTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp EEECT--TCCBCCGGGGTTCTTCCEEEESS
T ss_pred EEECc--ccCEEhHhHhhCCCCCCEEEECC
Confidence 99864 466675 3578888899888776
No 145
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.50 E-value=4.3e-06 Score=76.73 Aligned_cols=148 Identities=15% Similarity=0.110 Sum_probs=87.2
Q ss_pred cccCccccceeecccCCCccccCC-CCcCcccccEEEeecCCCcccccccccCCCCCceEEecC-ccCCccCCCCCCccc
Q 043298 132 GLHKLHQLREIWIRECGNLVSFPE-GGLPCAKLRRLGIYDCERLEALPKGLHNLSSLQELTIGG-ELPSLEEDGLPTNLH 209 (357)
Q Consensus 132 ~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~L~ 209 (357)
......+|+.+.+.. .+..+.. .+..+.+++.+.+..+ ........+..+..++.+.... .+... ....+.+|+
T Consensus 225 ~~~~~~~l~~i~ip~--~~~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~i~~~-~F~~~~~L~ 300 (394)
T 4fs7_A 225 FALSKTGVKNIIIPD--SFTELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVIVPEK-TFYGCSSLT 300 (394)
T ss_dssp TTTTTCCCCEEEECT--TCCEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSEECTT-TTTTCTTCC
T ss_pred hhcccCCCceEEECC--CceecccccccccccceeEEcCCC-cceeeccccccccccceeccCceeeccc-ccccccccc
Confidence 334456677777654 2344432 4556777888877652 2222234666777777776655 22111 134457777
Q ss_pred eEEecCCcchhhhhhhcccccCCCCCcceEEeecCCCCCCcCccccccccCCCCCCCCccEEEcCccccCccccc-cccc
Q 043298 210 SLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLEHLSS-SIVD 288 (357)
Q Consensus 210 ~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~-~~~~ 288 (357)
.+.+.. .++.+... .|.++++|+.+++.. .++.++... +..+.+|+.+.+.. .++.+.. .|.+
T Consensus 301 ~i~l~~--~i~~I~~~---aF~~c~~L~~i~lp~---~v~~I~~~a------F~~c~~L~~i~lp~--~l~~I~~~aF~~ 364 (394)
T 4fs7_A 301 EVKLLD--SVKFIGEE---AFESCTSLVSIDLPY---LVEEIGKRS------FRGCTSLSNINFPL--SLRKIGANAFQG 364 (394)
T ss_dssp EEEECT--TCCEECTT---TTTTCTTCCEECCCT---TCCEECTTT------TTTCTTCCEECCCT--TCCEECTTTBTT
T ss_pred cccccc--ccceechh---hhcCCCCCCEEEeCC---cccEEhHHh------ccCCCCCCEEEECc--cccEehHHHhhC
Confidence 777754 24444442 577788888888765 245554432 45677888888764 3666643 4677
Q ss_pred ccccCeecccc
Q 043298 289 LQNLTSLGLYN 299 (357)
Q Consensus 289 ~~~L~~L~l~~ 299 (357)
+.+|+.+.+..
T Consensus 365 C~~L~~i~lp~ 375 (394)
T 4fs7_A 365 CINLKKVELPK 375 (394)
T ss_dssp CTTCCEEEEEG
T ss_pred CCCCCEEEECC
Confidence 77787777653
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.45 E-value=3.1e-05 Score=70.98 Aligned_cols=258 Identities=14% Similarity=0.198 Sum_probs=157.9
Q ss_pred ccccccccccccccCCCCC-CcCCccEEEEecCCCccccccCC--CCCCcccceecc-cCCCcceEEE---ecCCCCchh
Q 043298 32 NIRTLTVEEGIQCSSGRRY-TSSLLEELFVFNCDSLTCIFSKY--ELPATLESLEVG-NLPSSVKVLD---VYGCPKLES 104 (357)
Q Consensus 32 ~l~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~c~~l~~~~~~~--~~~~~L~~L~l~-~l~~~L~~L~---l~~c~~~~~ 104 (357)
.++.++.. +|... . .|+.+.+-. .++.+ ... ..+.+|+.+.+. ..|.+++.+. ..+|..++.
T Consensus 50 ~Vt~Ig~~------aF~~~~~--~L~sI~iP~--svt~I-g~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~ 118 (394)
T 4gt6_A 50 PVSKIGDR------VFCNYKY--VLTSVQIPD--TVTEI-GSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTD 118 (394)
T ss_dssp EEEEECTT------TTTTCCS--CCCEEEECT--TCCEE-CTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCB
T ss_pred eeeEcCHh------hccCCCC--cCEEEEECC--CeeEE-hHHHhhCCccCceEeecCCCCCeeeEechhhchhccccee
Confidence 36677776 67665 3 599999965 47777 554 456788887765 2333244432 223444432
Q ss_pred ---------chhcc-CCCCcccEEEcccccCccccC-ccccCccccceeecccCCCccccCCCCcCcccccEEEeecCCC
Q 043298 105 ---------IAERL-DNNTSLETISIYNCENLKILP-SGLHKLHQLREIWIRECGNLVSFPEGGLPCAKLRRLGIYDCER 173 (357)
Q Consensus 105 ---------~~~~~-~~~~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~ 173 (357)
++... ..+.+|+.+.+.. .+..+. ..+..+.+|+.+.+.. .+..+........+|+.+.+...
T Consensus 119 i~~~~~~~~I~~~aF~~c~~L~~i~lp~--~~~~I~~~~F~~c~~L~~i~~~~--~~~~I~~~aF~~~~l~~i~ip~~-- 192 (394)
T 4gt6_A 119 IPILDSVTEIDSEAFHHCEELDTVTIPE--GVTSVADGMFSYCYSLHTVTLPD--SVTAIEERAFTGTALTQIHIPAK-- 192 (394)
T ss_dssp CGGGTTCSEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCCCSEEEECTT--
T ss_pred eccCCccceehhhhhhhhcccccccccc--eeeeecccceecccccccccccc--eeeEeccccccccceeEEEECCc--
Confidence 22221 2345577777753 334443 3456788999998865 36666655545568999888642
Q ss_pred cccc-cccccCCCCCceEEecC-------------------------------------ccCCccC--CCCCCccceEEe
Q 043298 174 LEAL-PKGLHNLSSLQELTIGG-------------------------------------ELPSLEE--DGLPTNLHSLDI 213 (357)
Q Consensus 174 ~~~~-~~~~~~l~~L~~L~l~~-------------------------------------~~~~~~~--~~~~~~L~~L~l 213 (357)
+..+ ..++..+.++....... .++.+.. +..+..|+.+.+
T Consensus 193 ~~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~l 272 (394)
T 4gt6_A 193 VTRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKM 272 (394)
T ss_dssp CCEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEEC
T ss_pred ccccccchhhhccccceecccccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEec
Confidence 2222 23455555555444322 1111111 233567777777
Q ss_pred cCCcchhhhhhhcccccCCCCCcceEEeecCCCCCCcCccccccccCCCCCCCCccEEEcCccccCcccc-ccccccccc
Q 043298 214 WGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLEHLS-SSIVDLQNL 292 (357)
Q Consensus 214 ~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~-~~~~~~~~L 292 (357)
... +..+.. ..+.+++.|+.+.+.. .+..++... +..+.+|+++.+.+ .++.|. ..|.+|.+|
T Consensus 273 p~~--~~~I~~---~aF~~c~~L~~i~l~~---~i~~I~~~a------F~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 273 PDS--VVSIGT---GAFMNCPALQDIEFSS---RITELPESV------FAGCISLKSIDIPE--GITQILDDAFAGCEQL 336 (394)
T ss_dssp CTT--CCEECT---TTTTTCTTCCEEECCT---TCCEECTTT------TTTCTTCCEEECCT--TCCEECTTTTTTCTTC
T ss_pred ccc--cceecC---cccccccccccccCCC---cccccCcee------ecCCCCcCEEEeCC--cccEehHhHhhCCCCC
Confidence 542 222332 3678889999999876 455565433 56788999999975 467775 457889999
Q ss_pred CeeccccCCCCcccCCCCC--ccCCceEEecCCh
Q 043298 293 TSLGLYNCPKLKYFPEKGL--PSSLLLLWIEGCP 324 (357)
Q Consensus 293 ~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~c~ 324 (357)
+.+.+.. .++.+....+ +.+|+.+++.+..
T Consensus 337 ~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 337 ERIAIPS--SVTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp CEEEECT--TCCBCCGGGGTTCTTCCEEEESSCH
T ss_pred CEEEECc--ccCEEhHhHhhCCCCCCEEEECCce
Confidence 9999864 4777766444 6789999998753
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.35 E-value=1.2e-06 Score=78.99 Aligned_cols=97 Identities=29% Similarity=0.309 Sum_probs=50.0
Q ss_pred EEecCCCCchhchhccCCCCcccEEEcccccCccccC-ccccCccccceeecccCCCccccCC-CCcCcccccEEEeecC
Q 043298 94 LDVYGCPKLESIAERLDNNTSLETISIYNCENLKILP-SGLHKLHQLREIWIRECGNLVSFPE-GGLPCAKLRRLGIYDC 171 (357)
Q Consensus 94 L~l~~c~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~-~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~ 171 (357)
++.++.+.++.+|. +....+|+.|+|++++.++.++ ..+.++++|+.|++++| .+..++. .+..+++|+.|++++|
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCC
Confidence 34444225556665 4344456666665435555554 34556666666666663 3444433 3455666666666653
Q ss_pred CCcccccc-cccCCCCCceEEecC
Q 043298 172 ERLEALPK-GLHNLSSLQELTIGG 194 (357)
Q Consensus 172 ~~~~~~~~-~~~~l~~L~~L~l~~ 194 (357)
+ +..+|. .+..++ |+.|++.+
T Consensus 91 ~-l~~~~~~~~~~~~-L~~l~l~~ 112 (347)
T 2ifg_A 91 A-LESLSWKTVQGLS-LQELVLSG 112 (347)
T ss_dssp C-CSCCCSTTTCSCC-CCEEECCS
T ss_pred c-cceeCHHHcccCC-ceEEEeeC
Confidence 3 334433 233333 66666555
No 148
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.25 E-value=5.9e-07 Score=72.00 Aligned_cols=39 Identities=5% Similarity=0.112 Sum_probs=22.8
Q ss_pred ccceEEecCCcchhhhhhhcccccCCCCCcceEEeecCCCCCCc
Q 043298 207 NLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDMVS 250 (357)
Q Consensus 207 ~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~ 250 (357)
.|++|++++|. +++.... .+.++++|++|++++ |..+++
T Consensus 62 ~L~~LDLs~~~-Itd~GL~---~L~~~~~L~~L~L~~-C~~ItD 100 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFD---HMEGLQYVEKIRLCK-CHYIED 100 (176)
T ss_dssp CEEEEEEESCC-CCGGGGG---GGTTCSCCCEEEEES-CTTCCH
T ss_pred eEeEEeCcCCC-ccHHHHH---HhcCCCCCCEEEeCC-CCccCH
Confidence 56667777665 4444332 345666666666666 655443
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.22 E-value=3e-06 Score=76.23 Aligned_cols=103 Identities=16% Similarity=0.152 Sum_probs=74.7
Q ss_pred cEEEEecCCCccccccCCCCCCcccceecccCCCcceEEEecCCCCchhchhc-cCCCCcccEEEcccccCccccCc-cc
Q 043298 56 EELFVFNCDSLTCIFSKYELPATLESLEVGNLPSSVKVLDVYGCPKLESIAER-LDNNTSLETISIYNCENLKILPS-GL 133 (357)
Q Consensus 56 ~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~l~~~L~~L~l~~c~~~~~~~~~-~~~~~~L~~L~l~~c~~l~~l~~-~~ 133 (357)
..++.++.+.++.+ |. +..+.. |++|++++++.++.++.. ++.+.+|+.|+|++ +.++.++. .+
T Consensus 11 ~~v~~~~~n~l~~i-p~---l~~~~~---------L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~ 76 (347)
T 2ifg_A 11 SGLRCTRDGALDSL-HH---LPGAEN---------LTELYIENQQHLQHLELRDLRGLGELRNLTIVK-SGLRFVAPDAF 76 (347)
T ss_dssp SCEECCSSCCCTTT-TT---SCSCSC---------CSEEECCSCSSCCEECGGGSCSCCCCSEEECCS-SCCCEECTTGG
T ss_pred CEEEcCCCCCCCcc-CC---CCCCCC---------eeEEEccCCCCCCCcChhHhccccCCCEEECCC-CccceeCHHHh
Confidence 45666663367777 64 334443 999999865788888754 45567799999999 67887654 56
Q ss_pred cCccccceeecccCCCccccCCCCcCcccccEEEeecCCC
Q 043298 134 HKLHQLREIWIRECGNLVSFPEGGLPCAKLRRLGIYDCER 173 (357)
Q Consensus 134 ~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~ 173 (357)
.++++|+.|++++ +.+..+|........|+.|++.+|+.
T Consensus 77 ~~l~~L~~L~l~~-N~l~~~~~~~~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 77 HFTPRLSRLNLSF-NALESLSWKTVQGLSLQELVLSGNPL 115 (347)
T ss_dssp GSCSCCCEEECCS-SCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred cCCcCCCEEeCCC-CccceeCHHHcccCCceEEEeeCCCc
Confidence 8899999999998 56777876544433499999988654
No 150
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.22 E-value=0.00037 Score=63.27 Aligned_cols=42 Identities=10% Similarity=0.150 Sum_probs=29.0
Q ss_pred ccccceeecccccccccccccccccccCCCCCCcCCccEEEEecCCCccccccCC
Q 043298 19 PSSLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFNCDSLTCIFSKY 73 (357)
Q Consensus 19 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~ 73 (357)
..+|+.+.+.. .++.++.. +|.++. +|+.+.+.. .++.+ +..
T Consensus 45 ~~~i~~v~ip~--~vt~Ig~~------aF~~C~--~L~~I~lp~--~v~~I-g~~ 86 (379)
T 4h09_A 45 RDRISEVRVNS--GITSIGEA------NFNSCY--NMTKVTVAS--TVTSI-GDG 86 (379)
T ss_dssp GGGCSEEEECT--TEEEECTT------TTTTCT--TCCEEEECT--TCCEE-CTT
T ss_pred ccCCEEEEeCC--CccChHHH------HhhCCC--CCCEEEeCC--cceEe-chh
Confidence 46788888764 37777777 777777 888888854 46666 444
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.20 E-value=0.00033 Score=63.58 Aligned_cols=103 Identities=13% Similarity=0.165 Sum_probs=42.9
Q ss_pred cccCCCCCceEEecCccCCccC--CCCCCccceEEecCCcchhhhhhhcccccCCCCCcceEEeecCCCCCCcCcccccc
Q 043298 180 GLHNLSSLQELTIGGELPSLEE--DGLPTNLHSLDIWGNMEIWKSMIERGRGFHRFSSLGHLKIGGCDDDMVSFPLEDKR 257 (357)
Q Consensus 180 ~~~~l~~L~~L~l~~~~~~~~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~~~~L~~L~l~~~c~~l~~~~~~~~~ 257 (357)
.+..+..|+.+.+...++.+.. ...+.+|+.+.+.. .++.++. ..+.++++|+.+.+.+ ..++.++...
T Consensus 235 ~f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~---~aF~~c~~L~~i~l~~--~~i~~I~~~a-- 305 (379)
T 4h09_A 235 AFYGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYA--KVKTVPY---LLCSGCSNLTKVVMDN--SAIETLEPRV-- 305 (379)
T ss_dssp TTTTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECC--CCSEECT---TTTTTCTTCCEEEECC--TTCCEECTTT--
T ss_pred cccCCccceEEEcCCCccEeCccccceeehhccccccc--cceeccc---cccccccccccccccc--cccceehhhh--
Confidence 3444455555555442222222 22234455555432 1222222 2345555555555544 2333333322
Q ss_pred ccCCCCCCCCccEEEcCccccCccccc-ccccccccCeecc
Q 043298 258 LGTALPLPASLTSLWIEDFPNLEHLSS-SIVDLQNLTSLGL 297 (357)
Q Consensus 258 ~~~~~~~~~~L~~L~l~~c~~l~~i~~-~~~~~~~L~~L~l 297 (357)
+..+.+|+.+.+.. .++.|.. .|.++.+|+.+.+
T Consensus 306 ----F~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 306 ----FMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp ----TTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCC
T ss_pred ----hcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEE
Confidence 33445555555532 2344432 2344444444444
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.17 E-value=1.3e-06 Score=69.99 Aligned_cols=66 Identities=14% Similarity=0.195 Sum_probs=31.5
Q ss_pred CccceEEecCCcchhhhhhhcccccCCC----CCcceEEeecCCCCCCcCccccccccCCCCCCCCccEEEcCccccCcc
Q 043298 206 TNLHSLDIWGNMEIWKSMIERGRGFHRF----SSLGHLKIGGCDDDMVSFPLEDKRLGTALPLPASLTSLWIEDFPNLEH 281 (357)
Q Consensus 206 ~~L~~L~l~~~~~l~~~~~~~~~~l~~~----~~L~~L~l~~~c~~l~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 281 (357)
++|++|++++|..+++.... .+..+ ++|++|++++ |.++++..-.. +..+++|++|++++|+.+++
T Consensus 85 ~~L~~L~L~~C~~ItD~gL~---~L~~~~~~~~~L~~L~Ls~-C~~ITD~Gl~~------L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 85 QYVEKIRLCKCHYIEDGCLE---RLSQLENLQKSMLEMEIIS-CGNVTDKGIIA------LHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp SCCCEEEEESCTTCCHHHHH---HHHTCHHHHHHCCEEEEES-CTTCCHHHHHH------GGGCTTCCEEEEESCTTCCC
T ss_pred CCCCEEEeCCCCccCHHHHH---HHHhcccccCCCCEEEcCC-CCcCCHHHHHH------HhcCCCCCEEECCCCCCCCc
Confidence 45555555555555544432 22222 3566666666 55544322111 12345666666666655554
No 153
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.10 E-value=1e-07 Score=86.79 Aligned_cols=130 Identities=15% Similarity=0.110 Sum_probs=67.2
Q ss_pred ceEEEecCCCCchhch--hccCCCCcccEEEcccccCcccc-----Cccc-cCccccceeecccCCCcc----ccCCCCc
Q 043298 91 VKVLDVYGCPKLESIA--ERLDNNTSLETISIYNCENLKIL-----PSGL-HKLHQLREIWIRECGNLV----SFPEGGL 158 (357)
Q Consensus 91 L~~L~l~~c~~~~~~~--~~~~~~~~L~~L~l~~c~~l~~l-----~~~~-~~l~~L~~L~l~~~~~l~----~~~~~~~ 158 (357)
|++|++++| .++... .......+|++|++++| .+... ...+ ...++|++|++++|..-. .++..+.
T Consensus 103 L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 103 LDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp EEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred ceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 777777774 333211 11111234777777773 44321 1111 234667777777754211 1222334
Q ss_pred CcccccEEEeecCCCcc----cccccccCCCCCceEEecC-ccCCc-----cC-CCCCCccceEEecCCcchhhhh
Q 043298 159 PCAKLRRLGIYDCERLE----ALPKGLHNLSSLQELTIGG-ELPSL-----EE-DGLPTNLHSLDIWGNMEIWKSM 223 (357)
Q Consensus 159 ~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~-~~~~~-----~~-~~~~~~L~~L~l~~~~~l~~~~ 223 (357)
..++|++|++++|..-. .++..+...++|++|++++ .++.. .. ....++|++|++++|. +.+..
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~-i~~~g 255 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE-LSSEG 255 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS-CCHHH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC-CCHHH
Confidence 45677777777755322 2234556667788887777 44321 11 1124678888888854 44433
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.00 E-value=4.2e-06 Score=75.69 Aligned_cols=14 Identities=7% Similarity=0.283 Sum_probs=8.5
Q ss_pred ccCccccceeeccc
Q 043298 133 LHKLHQLREIWIRE 146 (357)
Q Consensus 133 ~~~l~~L~~L~l~~ 146 (357)
...+++|+.|.+..
T Consensus 135 ~~~l~~L~~L~l~~ 148 (362)
T 2ra8_A 135 KEKFAHFEGLFWGD 148 (362)
T ss_dssp HHHHTTCSEEEECC
T ss_pred hhhcchhhheeecC
Confidence 34466777776644
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.98 E-value=1.4e-06 Score=78.85 Aligned_cols=77 Identities=19% Similarity=0.282 Sum_probs=40.0
Q ss_pred CcccEEEcccccCcc----------ccCccccCccccceeecccCCCccccCCCCcCcccccEEEeecCCCcccccccc-
Q 043298 113 TSLETISIYNCENLK----------ILPSGLHKLHQLREIWIRECGNLVSFPEGGLPCAKLRRLGIYDCERLEALPKGL- 181 (357)
Q Consensus 113 ~~L~~L~l~~c~~l~----------~l~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~- 181 (357)
.+|+.|.+.+. ..+ .+...+..+|+|+.|.+.++..+ .++. + ..++|++|++..|.........+
T Consensus 139 ~~L~~L~l~~~-~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~ 214 (362)
T 2ra8_A 139 AHFEGLFWGDI-DFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDIL 214 (362)
T ss_dssp TTCSEEEECCC-CTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHH
T ss_pred chhhheeecCc-chhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHH
Confidence 35888887552 111 12223345677777777765322 2332 2 25677777776654322211222
Q ss_pred -cCCCCCceEEec
Q 043298 182 -HNLSSLQELTIG 193 (357)
Q Consensus 182 -~~l~~L~~L~l~ 193 (357)
..+|+|+.|++.
T Consensus 215 ~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 215 GSDLPNLEKLVLY 227 (362)
T ss_dssp HSBCTTCCEEEEE
T ss_pred HccCCCCcEEEEe
Confidence 256667776663
No 156
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.91 E-value=8.9e-07 Score=80.61 Aligned_cols=105 Identities=17% Similarity=0.226 Sum_probs=51.8
Q ss_pred CCCcceEEEecCCCCchhc-----hhcc-CCCCcccEEEcccccCccc--cCccccCccccceeecccCCCccc----cC
Q 043298 87 LPSSVKVLDVYGCPKLESI-----AERL-DNNTSLETISIYNCENLKI--LPSGLHKLHQLREIWIRECGNLVS----FP 154 (357)
Q Consensus 87 l~~~L~~L~l~~c~~~~~~-----~~~~-~~~~~L~~L~l~~c~~l~~--l~~~~~~l~~L~~L~l~~~~~l~~----~~ 154 (357)
++. |++|++++|. ++.. .... ..+.+|++|++++| .+.. +......+++|+.|++++|..-.. +.
T Consensus 71 ~~~-L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~ 147 (372)
T 3un9_A 71 LSS-LRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLR 147 (372)
T ss_dssp HTT-CCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHH
T ss_pred Hhh-CCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHH
Confidence 345 7788888753 4432 1111 12345788888774 4432 111123356677777777532211 11
Q ss_pred CCC-cCcccccEEEeecCCCcc----cccccccCCCCCceEEecC
Q 043298 155 EGG-LPCAKLRRLGIYDCERLE----ALPKGLHNLSSLQELTIGG 194 (357)
Q Consensus 155 ~~~-~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~ 194 (357)
..+ ...++|++|++++|..-. .++..+...++|++|++++
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~ 192 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLH 192 (372)
T ss_dssp HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTT
T ss_pred HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCC
Confidence 111 124567777777654321 2233344555566666555
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.48 E-value=0.00064 Score=55.10 Aligned_cols=11 Identities=18% Similarity=0.036 Sum_probs=5.9
Q ss_pred CccceEEecCC
Q 043298 206 TNLHSLDIWGN 216 (357)
Q Consensus 206 ~~L~~L~l~~~ 216 (357)
+.|++|++++|
T Consensus 151 ~~L~~L~L~~n 161 (185)
T 1io0_A 151 TTLLKFGYHFT 161 (185)
T ss_dssp SSCCEEECCCS
T ss_pred CCcCEEeccCC
Confidence 45555555553
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.34 E-value=0.0016 Score=55.83 Aligned_cols=77 Identities=18% Similarity=0.075 Sum_probs=51.0
Q ss_pred CcccEEEcccccCccccC---ccccCccccceeecccCCCccccCCCCcCcc--cccEEEeecCCCcccccc-------c
Q 043298 113 TSLETISIYNCENLKILP---SGLHKLHQLREIWIRECGNLVSFPEGGLPCA--KLRRLGIYDCERLEALPK-------G 180 (357)
Q Consensus 113 ~~L~~L~l~~c~~l~~l~---~~~~~l~~L~~L~l~~~~~l~~~~~~~~~l~--~L~~L~l~~~~~~~~~~~-------~ 180 (357)
.+|+.|++++ +.+..++ ..+..+++|+.|++++| .+..+. .+..+. +|++|++.+|+....+|. .
T Consensus 170 ~~L~~L~Ls~-N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 170 PELLSLNLSN-NRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp TTCCEEECTT-SCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred CCCCEEECCC-CCCCCCccchhHHhhCCCCCEEECCCC-ccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 3488888888 6676543 44567888888888874 455442 122233 888899888776554432 3
Q ss_pred ccCCCCCceEEe
Q 043298 181 LHNLSSLQELTI 192 (357)
Q Consensus 181 ~~~l~~L~~L~l 192 (357)
+..+++|+.|+-
T Consensus 247 l~~~P~L~~LDg 258 (267)
T 3rw6_A 247 RERFPKLLRLDG 258 (267)
T ss_dssp HHHCTTCCEESS
T ss_pred HHHCcccCeECC
Confidence 567888888863
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.31 E-value=0.0016 Score=55.96 Aligned_cols=35 Identities=14% Similarity=0.247 Sum_probs=17.4
Q ss_pred cccccEEEeecCCCcc--cccccccCCCCCceEEecC
Q 043298 160 CAKLRRLGIYDCERLE--ALPKGLHNLSSLQELTIGG 194 (357)
Q Consensus 160 l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~ 194 (357)
+++|+.|++++|.... .++..+..+++|+.|++++
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~ 205 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG 205 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTT
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCC
Confidence 4556666666543322 2333344555555555555
No 160
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.05 E-value=0.00062 Score=55.16 Aligned_cols=12 Identities=8% Similarity=-0.136 Sum_probs=6.8
Q ss_pred CCCccEEEcCcc
Q 043298 265 PASLTSLWIEDF 276 (357)
Q Consensus 265 ~~~L~~L~l~~c 276 (357)
.++|++|+++++
T Consensus 150 n~~L~~L~L~~n 161 (185)
T 1io0_A 150 NTTLLKFGYHFT 161 (185)
T ss_dssp CSSCCEEECCCS
T ss_pred CCCcCEEeccCC
Confidence 345666666653
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.32 E-value=0.1 Score=39.18 Aligned_cols=51 Identities=24% Similarity=0.294 Sum_probs=30.9
Q ss_pred EEecCCCCch--hchhccCCCCcccEEEcccccCccccCcc-ccCccccceeecccCC
Q 043298 94 LDVYGCPKLE--SIAERLDNNTSLETISIYNCENLKILPSG-LHKLHQLREIWIRECG 148 (357)
Q Consensus 94 L~l~~c~~~~--~~~~~~~~~~~L~~L~l~~c~~l~~l~~~-~~~l~~L~~L~l~~~~ 148 (357)
++-++ ..++ .+|.. .+.+|+.|+|++ +.++.++.. +..+++|+.|++.+|+
T Consensus 13 v~Cs~-~~L~~~~vP~~--lp~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 13 VDCGR-RGLTWASLPTA--FPVDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EECCS-SCCCTTTSCSC--CCTTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEeCC-CCCccccCCCC--CCcCCCEEECCC-CcCCccChhhhhhccccCEEEecCCC
Confidence 44444 4555 66654 355577777777 667766544 3556677777776654
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.56 E-value=0.089 Score=39.55 Aligned_cols=36 Identities=11% Similarity=0.061 Sum_probs=18.6
Q ss_pred cccccceeecccccccccccccccccccCCCCCCcCCccEEEEec
Q 043298 18 LPSSLKNLQIRDCYNIRTLTVEEGIQCSSGRRYTSSLLEELFVFN 62 (357)
Q Consensus 18 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 62 (357)
++++|+.|+|+++. ++.+|.. +|..+. +|+.|++.+
T Consensus 29 lp~~l~~L~Ls~N~-l~~l~~~------~f~~l~--~L~~L~L~~ 64 (130)
T 3rfe_A 29 FPVDTTELVLTGNN-LTALPPG------LLDALP--ALRTAHLGA 64 (130)
T ss_dssp CCTTCSEEECTTSC-CSSCCTT------TGGGCT--TCCEEECCS
T ss_pred CCcCCCEEECCCCc-CCccChh------hhhhcc--ccCEEEecC
Confidence 34455555555554 5555554 444444 555555554
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=81.55 E-value=0.37 Score=38.94 Aligned_cols=9 Identities=33% Similarity=0.516 Sum_probs=5.1
Q ss_pred cccEEEccc
Q 043298 114 SLETISIYN 122 (357)
Q Consensus 114 ~L~~L~l~~ 122 (357)
+|+.|+|++
T Consensus 71 ~L~~L~L~~ 79 (197)
T 1pgv_A 71 HIEKFSLAN 79 (197)
T ss_dssp CCCEEECTT
T ss_pred CcCEEEccC
Confidence 355566655
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=76.93 E-value=0.97 Score=36.48 Aligned_cols=36 Identities=14% Similarity=0.226 Sum_probs=17.9
Q ss_pred CcccEEEcccccCccc-----cCccccCccccceeecccCC
Q 043298 113 TSLETISIYNCENLKI-----LPSGLHKLHQLREIWIRECG 148 (357)
Q Consensus 113 ~~L~~L~l~~c~~l~~-----l~~~~~~l~~L~~L~l~~~~ 148 (357)
.+|++|++++++.+.. +...+..-+.|+.|++++|.
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~ 81 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA 81 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC
Confidence 3477777765334432 22233334556666666543
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=29.70 E-value=54 Score=22.74 Aligned_cols=14 Identities=21% Similarity=0.055 Sum_probs=6.8
Q ss_pred CCCCCCcCCccEEEEe
Q 043298 46 SGRRYTSSLLEELFVF 61 (357)
Q Consensus 46 ~~~~~~~~~L~~L~l~ 61 (357)
.|.++. +|+.+.|-
T Consensus 15 aF~~c~--~L~~i~iP 28 (100)
T 2lz0_A 15 LFAGNT--VIREITVQ 28 (100)
T ss_dssp TTTTCT--TCCCEEEC
T ss_pred HhcCCC--CCcEEEcC
Confidence 444444 55555554
Done!