BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043301
(244 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1V5N|A Chain A, Solution Structure Of Dc1 Domain Of Pdi-Like Hypothetical
Protein From Arabidopsis Thaliana
Length = 89
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 62 ELPLKIDHPFHC-HPLTLSKTNHHRCDACLDECSGMAYRCHECCYNLHYHCT 112
+ P K+ H H H L L++ + CD C +E + +Y C EC ++LH C
Sbjct: 25 DWPKKVKHVLHEEHELELTRVQVYTCDKCEEEGTIWSYHCDECDFDLHAKCA 76
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 32 VIICDICETSLQGPAYGCGTCEFSIHKSCA 61
V CD CE +Y C C+F +H CA
Sbjct: 47 VYTCDKCEEEGTIWSYHCDECDFDLHAKCA 76
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 79/209 (37%), Gaps = 41/209 (19%)
Query: 46 AYGCGTCEFSIHKSCAEL-----PLKIDHPFHCHPLTLSKTNHHR------CDACLDECS 94
+ C C F +HK C E P P P + K H CD C
Sbjct: 65 GFQCQVCSFVVHKRCHEFVTFSCPGADKGPASDDPRSKHKFKIHTYSSPTFCDHCGSLLY 124
Query: 95 GM---AYRCHECCYNLHYHCTALKPSI---NFKELKCVLHEVMQSLLEKQPQDVELRTIQ 148
G+ +C C N+H C PS+ + E + ++ +Q+ ++++ V +R +
Sbjct: 125 GLIHQGMKCDTCMMNVHKRCVMNVPSLCGTDHTERRGRIY--IQAHIDREVLIVVVRDAK 182
Query: 149 ERNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPY 208
P D N L D ++ I SE+ Q +K S P
Sbjct: 183 NLVP--------------MDPNGLSDPYVKLKL----IPDPKSES-KQKTKTIKSSLNPE 223
Query: 209 SDDTLAQFILRLQNSLRSKNMSVEFWDLD 237
++T F +L+ S + + +SVE WD D
Sbjct: 224 WNET---FRFQLKESDKDRRLSVEIWDWD 249
>pdb|3CXL|A Chain A, Crystal Structure Of Human Chimerin 1 (Chn1)
Length = 463
Score = 30.8 bits (68), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 20/127 (15%)
Query: 84 HRCDACLDECSGM---AYRCHECCYNLHYHCTALKPSINFKELK-------CVLHEVMQS 133
H C+ C + G+ +C +C N+H C+ + P+ +LK C L ++++
Sbjct: 221 HWCEYCANFMWGLIAQGVKCADCGLNVHKQCSKMVPNDCKPDLKHVKKVYSCDLTTLVKA 280
Query: 134 LLEKQPQDVEL--RTIQER--NPEDLTFHDVFSSFTEKDRNQLD------DITENIESEI 183
K+P V++ R I+ R N E L FS E + D DI+ N+ +I
Sbjct: 281 HTTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDI 340
Query: 184 AGIKKTL 190
I L
Sbjct: 341 NIITGAL 347
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 157 FHDVFSSF-TEKDRNQLDDITEN---IESEIAGIKKTLSETGDQGSKVTISESYPYSDDT 212
F +V S T K++ ++D + EN + EIAG T E G ++ I E+YP++
Sbjct: 17 FKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPK 76
Query: 213 LAQFILRL 220
+ +FI ++
Sbjct: 77 V-RFITKI 83
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 157 FHDVFSSF-TEKDRNQLDDITEN---IESEIAGIKKTLSETGDQGSKVTISESYPYSDDT 212
F +V S T K++ ++D + EN + EIAG T E G ++ I E+YP++
Sbjct: 14 FKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPK 73
Query: 213 LAQFILRL 220
+ +FI ++
Sbjct: 74 V-RFITKI 80
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 157 FHDVFSSF-TEKDRNQLDDITEN---IESEIAGIKKTLSETGDQGSKVTISESYPYSDDT 212
F +V S T K++ ++D + EN + EIAG T E G ++ I E+YP++
Sbjct: 15 FKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPK 74
Query: 213 LAQFILRL 220
+ +FI ++
Sbjct: 75 V-RFITKI 81
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 157 FHDVFSSF-TEKDRNQLDDITEN---IESEIAGIKKTLSETGDQGSKVTISESYPYSDDT 212
F +V S T K++ ++D + EN + EIAG T E G ++ I E+YP++
Sbjct: 30 FKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPK 89
Query: 213 LAQFILRL 220
+ +FI ++
Sbjct: 90 V-RFITKI 96
>pdb|3LN7|A Chain A, Crystal Structure Of A Bifunctional Glutathione Synthetase
From Pasteurella Multocida
pdb|3LN7|B Chain B, Crystal Structure Of A Bifunctional Glutathione Synthetase
From Pasteurella Multocida
Length = 757
Score = 29.3 bits (64), Expect = 2.0, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 12/67 (17%)
Query: 126 VLHEVMQ-SLLEKQ-----------PQDVELRTIQERNPEDLTFHDVFSSFTEKDRNQLD 173
V+HEV+Q SL E++ P + ++R Q NPED+ + + K++ +
Sbjct: 82 VIHEVVQRSLPEEEYIFPLSXPAGLPAEEQIRVAQLDNPEDVAYREYLVKIYGKNKQXVS 141
Query: 174 DITENIE 180
I N +
Sbjct: 142 GIHYNFQ 148
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 157 FHDVFSSF-TEKDRNQLDDITEN---IESEIAGIKKTLSETGDQGSKVTISESYPYSDDT 212
F +V S T K++ ++D + EN + EIAG T E G ++ I E+YP++
Sbjct: 66 FKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPK 125
Query: 213 LAQFILRL 220
+ +FI ++
Sbjct: 126 V-RFITKI 132
>pdb|1XA6|A Chain A, Crystal Structure Of The Human Beta2-Chimaerin
Length = 466
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 58/128 (45%), Gaps = 22/128 (17%)
Query: 84 HRCDACLDECSGM---AYRCHECCYNLHYHCTALKPS---INFKELK----CVLHEVMQS 133
H C+ C + G+ RC +C N+H C+ P+ + K +K C L ++++
Sbjct: 224 HWCEYCANFMWGLIAQGVRCSDCGLNVHKQCSKHVPNDCQPDLKRIKKVYCCDLTTLVKA 283
Query: 134 LLEKQPQ--DVELRTIQERNPEDLTFHDVFSSFTEK--------DRN-QLDDITENIESE 182
++P D+ +R I+ R + + V S FTE DR+ + DI+ N+ +
Sbjct: 284 HNTQRPMVVDICIREIEARGLKSEGLYRV-SGFTEHIEDVKMAFDRDGEKADISANVYPD 342
Query: 183 IAGIKKTL 190
I I L
Sbjct: 343 INIITGAL 350
>pdb|3RM5|A Chain A, Structure Of Trifunctional Thi20 From Yeast
pdb|3RM5|B Chain B, Structure Of Trifunctional Thi20 From Yeast
Length = 550
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 14/75 (18%)
Query: 119 NFKELKC--------------VLHEVMQSLLEKQPQDVELRTIQERNPEDLTFHDVFSSF 164
N K++KC VLHE + L E +P+ V + + L D+ S
Sbjct: 86 NLKDMKCNVIKTGMLTAAAIEVLHEKLLQLGENRPKLVVDPVLVATSGSSLAGKDIVSLI 145
Query: 165 TEKDRNQLDDITENI 179
TEK D +T NI
Sbjct: 146 TEKVAPFADILTPNI 160
>pdb|2FNF|X Chain X, C1 Domain Of Nore1
Length = 72
Score = 27.7 bits (60), Expect = 6.5, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 35 CDICETSLQGPAYGCGTCEFSIHKSCAEL 63
CD+C + A C C+F+ H C L
Sbjct: 38 CDLCGREVLRQALRCANCKFTCHSECRSL 66
>pdb|1RFH|A Chain A, Solution Structure Of The C1 Domain Of Nore1, A Novel
Ras Effector
Length = 59
Score = 27.3 bits (59), Expect = 7.3, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 35 CDICETSLQGPAYGCGTCEFSIHKSCAEL 63
CD+C + A C C+F+ H C L
Sbjct: 25 CDLCGREVLRQALRCANCKFTCHSECRSL 53
>pdb|3VSK|A Chain A, Crystal Structure Of Penicillin-Binding Protein 3 (Pbp3)
From Methicilin-Resistant Staphylococcus Aureus In The
Apo Form.
pdb|3VSK|B Chain B, Crystal Structure Of Penicillin-Binding Protein 3 (Pbp3)
From Methicilin-Resistant Staphylococcus Aureus In The
Apo Form.
pdb|3VSL|A Chain A, Crystal Structure Of Penicillin-Binding Protein 3 (Pbp3)
From Methicilin-Resistant Staphylococcus Aureus In The
Cefotaxime Bound Form.
pdb|3VSL|B Chain B, Crystal Structure Of Penicillin-Binding Protein 3 (Pbp3)
From Methicilin-Resistant Staphylococcus Aureus In The
Cefotaxime Bound Form
Length = 646
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%)
Query: 143 ELRTIQERNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTI 202
++ T E P++LT H + ++ DR + E + G KK + T D+ KVT
Sbjct: 199 DVSTPAEGIPKELTEHYLSKGYSRNDRVGKSYLEYQYEDVLRGKKKEMKYTTDKSGKVTS 258
Query: 203 SE 204
SE
Sbjct: 259 SE 260
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,379,500
Number of Sequences: 62578
Number of extensions: 293121
Number of successful extensions: 768
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 753
Number of HSP's gapped (non-prelim): 27
length of query: 244
length of database: 14,973,337
effective HSP length: 96
effective length of query: 148
effective length of database: 8,965,849
effective search space: 1326945652
effective search space used: 1326945652
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)