Query 043301
Match_columns 244
No_of_seqs 182 out of 821
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 03:35:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043301.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043301hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0696 Serine/threonine prote 100.0 1.3E-55 2.7E-60 409.1 2.5 192 30-242 54-262 (683)
2 cd08381 C2B_PI3K_class_II C2 d 99.2 3.4E-12 7.4E-17 101.6 2.8 89 140-242 2-96 (122)
3 cd08692 C2B_Tac2-N C2 domain s 99.2 4.3E-12 9.2E-17 103.4 2.8 83 152-243 15-98 (135)
4 cd04028 C2B_RIM1alpha C2 domai 99.2 1.7E-11 3.7E-16 101.1 4.7 89 140-243 18-112 (146)
5 cd08685 C2_RGS-like C2 domain 99.2 9.4E-12 2E-16 98.7 2.5 88 140-241 1-92 (119)
6 cd08406 C2B_Synaptotagmin-12 C 99.1 4.4E-11 9.6E-16 97.3 3.2 80 150-242 14-98 (136)
7 cd08393 C2A_SLP-1_2 C2 domain 99.1 1E-10 2.2E-15 93.3 3.5 91 140-243 2-100 (125)
8 cd08407 C2B_Synaptotagmin-13 C 99.0 1.9E-10 4.2E-15 93.9 3.8 81 149-242 13-100 (138)
9 cd08392 C2A_SLP-3 C2 domain fi 99.0 1.5E-10 3.2E-15 93.1 2.9 90 140-242 2-99 (128)
10 cd08680 C2_Kibra C2 domain fou 99.0 2E-10 4.3E-15 92.1 2.8 81 150-243 13-99 (124)
11 cd08677 C2A_Synaptotagmin-13 C 99.0 1.8E-10 3.8E-15 91.9 2.1 78 150-243 13-94 (118)
12 cd04029 C2A_SLP-4_5 C2 domain 99.0 3.7E-10 8.1E-15 90.1 3.8 90 140-242 2-99 (125)
13 cd08408 C2B_Synaptotagmin-14_1 98.9 6.9E-10 1.5E-14 90.3 3.5 80 150-242 14-99 (138)
14 cd08389 C2A_Synaptotagmin-14_1 98.9 6.3E-10 1.4E-14 88.6 3.0 89 140-242 3-97 (124)
15 cd08410 C2B_Synaptotagmin-17 C 98.9 7.2E-10 1.6E-14 89.5 3.1 80 150-242 13-97 (135)
16 cd08388 C2A_Synaptotagmin-4-11 98.9 1.4E-09 2.9E-14 87.3 3.5 90 140-242 3-99 (128)
17 cd08401 C2A_RasA2_RasA3 C2 dom 98.9 1.2E-09 2.6E-14 86.8 3.1 75 153-242 2-77 (121)
18 cd08404 C2B_Synaptotagmin-4 C2 98.8 1.7E-09 3.7E-14 87.0 3.3 90 140-242 2-98 (136)
19 cd04031 C2A_RIM1alpha C2 domai 98.8 2.2E-09 4.7E-14 84.5 3.8 90 140-242 3-100 (125)
20 cd08395 C2C_Munc13 C2 domain t 98.8 2.3E-09 5E-14 85.6 3.3 75 153-242 2-85 (120)
21 cd08385 C2A_Synaptotagmin-1-5- 98.8 2.1E-09 4.5E-14 84.8 2.9 90 140-242 3-97 (124)
22 cd04009 C2B_Munc13-like C2 dom 98.8 2.9E-09 6.4E-14 85.5 3.7 96 140-242 3-103 (133)
23 cd08682 C2_Rab11-FIP_classI C2 98.8 2.1E-09 4.6E-14 85.3 2.8 75 154-242 2-80 (126)
24 cd08688 C2_KIAA0528-like C2 do 98.8 2.1E-09 4.5E-14 83.6 2.2 76 153-242 1-79 (110)
25 KOG4236 Serine/threonine prote 98.8 4E-10 8.7E-15 108.8 -2.3 99 14-117 143-315 (888)
26 cd08387 C2A_Synaptotagmin-8 C2 98.8 5.1E-09 1.1E-13 82.7 3.9 90 140-242 3-97 (124)
27 cd04042 C2A_MCTP_PRT C2 domain 98.8 2.8E-09 6E-14 83.9 2.3 75 153-242 2-76 (121)
28 cd04041 C2A_fungal C2 domain f 98.8 3.3E-09 7.1E-14 82.6 2.5 78 152-242 2-84 (111)
29 cd08521 C2A_SLP C2 domain firs 98.8 4.1E-09 8.9E-14 82.6 3.1 80 150-242 13-98 (123)
30 cd08409 C2B_Synaptotagmin-15 C 98.8 4.5E-09 9.7E-14 85.2 3.2 79 150-242 14-97 (137)
31 cd04039 C2_PSD C2 domain prese 98.8 4E-09 8.7E-14 82.3 2.6 76 153-242 3-82 (108)
32 cd08384 C2B_Rabphilin_Doc2 C2 98.8 5E-09 1.1E-13 83.7 3.1 80 150-242 12-96 (133)
33 cd04020 C2B_SLP_1-2-3-4 C2 dom 98.7 6.3E-09 1.4E-13 86.9 3.4 79 151-242 27-111 (162)
34 cd04018 C2C_Ferlin C2 domain t 98.7 6.5E-09 1.4E-13 86.2 2.7 76 153-242 2-91 (151)
35 cd04026 C2_PKC_alpha_gamma C2 98.7 1.5E-08 3.4E-13 80.6 4.3 93 140-241 2-94 (131)
36 cd08405 C2B_Synaptotagmin-7 C2 98.7 1.5E-08 3.3E-13 81.4 3.6 80 150-242 14-98 (136)
37 cd08402 C2B_Synaptotagmin-1 C2 98.7 1.4E-08 3.1E-13 81.5 3.4 80 150-242 14-98 (136)
38 cd08403 C2B_Synaptotagmin-3-5- 98.7 1.5E-08 3.4E-13 81.1 3.5 79 151-242 14-97 (134)
39 cd08376 C2B_MCTP_PRT C2 domain 98.7 8.9E-09 1.9E-13 80.1 2.0 75 153-242 2-76 (116)
40 cd04032 C2_Perforin C2 domain 98.7 1.3E-08 2.9E-13 82.0 3.0 74 154-242 31-104 (127)
41 cd04054 C2A_Rasal1_RasA4 C2 do 98.7 1.6E-08 3.4E-13 80.0 3.1 75 153-242 2-76 (121)
42 cd08681 C2_fungal_Inn1p-like C 98.7 1.7E-08 3.6E-13 78.8 3.2 74 152-240 2-76 (118)
43 cd04019 C2C_MCTP_PRT_plant C2 98.6 1.3E-08 2.8E-13 84.0 2.4 75 153-242 2-77 (150)
44 cd04036 C2_cPLA2 C2 domain pre 98.6 1.7E-08 3.7E-13 79.2 2.9 73 153-239 2-76 (119)
45 cd08386 C2A_Synaptotagmin-7 C2 98.6 4.6E-08 1E-12 77.1 3.8 90 140-242 3-98 (125)
46 cd08382 C2_Smurf-like C2 domai 98.6 4.4E-08 9.6E-13 77.6 3.2 74 153-242 2-75 (123)
47 cd04010 C2B_RasA3 C2 domain se 98.5 5.6E-08 1.2E-12 80.2 3.4 75 153-242 2-94 (148)
48 cd04043 C2_Munc13_fungal C2 do 98.5 4.9E-08 1.1E-12 77.0 2.6 77 153-241 3-79 (126)
49 cd04030 C2C_KIAA1228 C2 domain 98.5 4.5E-08 9.7E-13 77.2 1.9 87 140-239 3-96 (127)
50 cd04025 C2B_RasA1_RasA4 C2 dom 98.5 7.7E-08 1.7E-12 75.8 3.0 75 153-242 2-76 (123)
51 cd08375 C2_Intersectin C2 doma 98.5 7.7E-08 1.7E-12 78.0 2.1 74 153-241 17-90 (136)
52 cd08390 C2A_Synaptotagmin-15-1 98.5 1.5E-07 3.1E-12 73.9 3.7 80 150-242 13-96 (123)
53 cd08400 C2_Ras_p21A1 C2 domain 98.4 8.5E-08 1.8E-12 76.5 2.1 72 153-242 6-77 (126)
54 cd00276 C2B_Synaptotagmin C2 d 98.4 1.3E-07 2.8E-12 75.0 3.0 80 150-242 13-97 (134)
55 cd04037 C2E_Ferlin C2 domain f 98.4 1.6E-07 3.4E-12 74.7 3.5 76 153-242 2-78 (124)
56 cd04017 C2D_Ferlin C2 domain f 98.4 1.1E-07 2.3E-12 76.6 2.5 76 153-242 3-86 (135)
57 cd04022 C2A_MCTP_PRT_plant C2 98.4 1.1E-07 2.4E-12 75.4 2.5 74 153-240 2-77 (127)
58 cd04033 C2_NEDD4_NEDD4L C2 dom 98.4 1.3E-07 2.7E-12 75.3 2.6 81 153-242 2-82 (133)
59 cd08676 C2A_Munc13-like C2 dom 98.4 1.2E-07 2.6E-12 78.8 2.5 80 153-237 30-128 (153)
60 PF07649 C1_3: C1-like domain; 98.4 5.6E-08 1.2E-12 59.2 0.3 29 33-61 1-30 (30)
61 cd08379 C2D_MCTP_PRT_plant C2 98.4 1.2E-07 2.7E-12 76.2 1.9 72 153-239 2-75 (126)
62 cd08678 C2_C21orf25-like C2 do 98.4 2E-07 4.4E-12 74.0 2.8 72 154-242 2-74 (126)
63 cd04035 C2A_Rabphilin_Doc2 C2 98.4 2.7E-07 5.8E-12 72.7 3.3 87 140-239 2-96 (123)
64 cd04046 C2_Calpain C2 domain p 98.4 2.2E-07 4.7E-12 73.9 2.5 73 153-241 5-77 (126)
65 cd08686 C2_ABR C2 domain in th 98.4 3E-07 6.5E-12 73.4 3.2 64 153-237 1-68 (118)
66 cd04024 C2A_Synaptotagmin-like 98.3 2.6E-07 5.7E-12 72.7 2.8 75 152-241 2-78 (128)
67 cd08675 C2B_RasGAP C2 domain s 98.3 4E-07 8.7E-12 73.9 3.4 78 154-242 2-93 (137)
68 cd04050 C2B_Synaptotagmin-like 98.3 2.6E-07 5.7E-12 71.0 2.0 71 153-238 2-72 (105)
69 cd04047 C2B_Copine C2 domain s 98.3 2.8E-07 6.2E-12 71.0 2.2 75 159-242 8-85 (110)
70 cd04038 C2_ArfGAP C2 domain pr 98.3 2.9E-07 6.3E-12 75.7 1.9 73 153-242 4-76 (145)
71 cd04045 C2C_Tricalbin-like C2 98.3 4.5E-07 9.6E-12 71.8 2.9 76 152-242 2-77 (120)
72 cd04016 C2_Tollip C2 domain pr 98.3 4.4E-07 9.5E-12 72.5 2.3 75 151-242 2-77 (121)
73 KOG1028 Ca2+-dependent phospho 98.3 6.6E-07 1.4E-11 85.5 4.0 82 149-243 165-249 (421)
74 cd04040 C2D_Tricalbin-like C2 98.2 8.3E-07 1.8E-11 68.8 3.3 75 154-242 2-76 (115)
75 cd08377 C2C_MCTP_PRT C2 domain 98.2 6.7E-07 1.5E-11 69.6 2.6 74 152-241 2-75 (119)
76 PF03107 C1_2: C1 domain; Int 98.2 7.6E-07 1.6E-11 54.2 2.2 29 33-61 1-30 (30)
77 cd04051 C2_SRC2_like C2 domain 98.2 7.6E-07 1.7E-11 70.2 2.9 77 153-242 2-82 (125)
78 cd04015 C2_plant_PLD C2 domain 98.2 6E-07 1.3E-11 74.6 2.2 58 169-240 54-111 (158)
79 PF07649 C1_3: C1-like domain; 98.2 3.1E-07 6.8E-12 55.9 0.3 29 84-112 1-30 (30)
80 cd04014 C2_PKC_epsilon C2 doma 98.2 5.1E-07 1.1E-11 72.1 1.7 75 152-242 5-89 (132)
81 cd04011 C2B_Ferlin C2 domain s 98.2 1.1E-06 2.5E-11 68.0 3.4 70 155-242 8-80 (111)
82 cd04027 C2B_Munc13 C2 domain s 98.2 8.2E-07 1.8E-11 70.7 2.5 70 153-238 3-72 (127)
83 KOG1028 Ca2+-dependent phospho 98.2 6.7E-07 1.5E-11 85.4 2.1 85 149-242 296-381 (421)
84 cd04049 C2_putative_Elicitor-r 98.2 1.2E-06 2.7E-11 69.0 2.9 77 152-242 2-81 (124)
85 cd04044 C2A_Tricalbin-like C2 98.1 1.7E-06 3.6E-11 67.7 2.7 75 153-242 4-80 (124)
86 PF00168 C2: C2 domain; Inter 98.1 4.4E-07 9.5E-12 65.2 -0.8 76 153-242 1-78 (85)
87 cd08391 C2A_C2C_Synaptotagmin_ 98.1 1.7E-06 3.7E-11 67.3 2.1 72 153-239 3-80 (121)
88 KOG0694 Serine/threonine prote 98.1 4.3E-07 9.3E-12 89.9 -1.6 95 30-126 167-285 (694)
89 cd04048 C2A_Copine C2 domain f 98.1 1.4E-06 3.1E-11 68.4 1.6 69 163-238 11-79 (120)
90 cd08691 C2_NEDL1-like C2 domai 98.0 2.7E-06 5.9E-11 69.3 2.7 71 154-241 4-87 (137)
91 cd08383 C2A_RasGAP C2 domain ( 98.0 3E-06 6.5E-11 65.6 2.6 73 153-242 2-75 (117)
92 cd04021 C2_E3_ubiquitin_ligase 98.0 3.3E-06 7.1E-11 67.2 2.8 73 153-242 4-76 (125)
93 PF03107 C1_2: C1 domain; Int 98.0 3.6E-06 7.8E-11 51.2 2.3 29 84-112 1-30 (30)
94 cd08378 C2B_MCTP_PRT_plant C2 98.0 3.3E-06 7.2E-11 66.9 2.5 68 153-239 2-69 (121)
95 cd08690 C2_Freud-1 C2 domain f 97.9 4.2E-06 9E-11 69.8 2.0 76 154-240 7-91 (155)
96 KOG1011 Neurotransmitter relea 97.9 4.2E-07 9.2E-12 89.4 -4.7 151 73-239 172-367 (1283)
97 cd08373 C2A_Ferlin C2 domain f 97.9 6.4E-06 1.4E-10 65.2 2.5 60 169-241 11-71 (127)
98 cd00275 C2_PLC_like C2 domain 97.9 9.2E-06 2E-10 63.7 2.7 73 153-239 4-84 (128)
99 KOG1030 Predicted Ca2+-depende 97.8 8.8E-06 1.9E-10 68.4 2.3 74 152-241 7-80 (168)
100 cd04052 C2B_Tricalbin-like C2 97.8 6.4E-06 1.4E-10 64.0 1.4 58 169-239 9-66 (111)
101 cd02340 ZZ_NBR1_like Zinc fing 97.8 1.4E-05 3E-10 52.7 2.6 39 34-77 2-41 (43)
102 PF00130 C1_1: Phorbol esters/ 97.6 7.7E-05 1.7E-09 50.6 3.8 45 74-118 1-49 (53)
103 cd02339 ZZ_Mind_bomb Zinc fing 97.6 4.5E-05 9.7E-10 50.8 2.4 30 34-63 2-33 (45)
104 PF00130 C1_1: Phorbol esters/ 97.6 5.8E-05 1.2E-09 51.2 2.9 36 30-65 9-47 (53)
105 cd02249 ZZ Zinc finger, ZZ typ 97.5 8.7E-05 1.9E-09 49.4 2.6 32 34-65 2-34 (46)
106 cd08394 C2A_Munc13 C2 domain f 97.5 5.5E-05 1.2E-09 61.1 1.9 67 152-239 3-70 (127)
107 cd02338 ZZ_PCMF_like Zinc fing 97.5 9.2E-05 2E-09 50.1 2.6 43 34-78 2-48 (49)
108 cd02340 ZZ_NBR1_like Zinc fing 97.4 0.0001 2.2E-09 48.6 2.2 31 85-115 2-33 (43)
109 cd02341 ZZ_ZZZ3 Zinc finger, Z 97.4 0.00012 2.5E-09 49.5 2.2 32 34-65 2-37 (48)
110 cd02334 ZZ_dystrophin Zinc fin 97.3 0.00019 4.2E-09 48.6 2.5 42 34-77 2-47 (49)
111 COG5038 Ca2+-dependent lipid-b 97.3 0.00017 3.7E-09 75.2 3.3 79 150-242 1039-1117(1227)
112 PLN03200 cellulose synthase-in 97.3 0.00019 4.1E-09 79.4 3.5 78 152-244 1981-2058(2102)
113 cd08374 C2F_Ferlin C2 domain s 97.2 0.00019 4.1E-09 58.5 2.6 75 155-242 4-108 (133)
114 cd02342 ZZ_UBA_plant Zinc fing 97.1 0.00026 5.6E-09 46.6 1.4 31 34-64 2-34 (43)
115 cd02343 ZZ_EF Zinc finger, ZZ 97.1 0.00037 8E-09 47.0 2.2 44 34-77 2-46 (48)
116 KOG0696 Serine/threonine prote 97.1 0.00028 6.1E-09 67.4 2.0 45 17-66 111-158 (683)
117 cd02344 ZZ_HERC2 Zinc finger, 97.0 0.00047 1E-08 45.9 2.5 30 34-63 2-33 (45)
118 cd00029 C1 Protein kinase C co 97.0 0.00043 9.2E-09 45.8 2.3 43 74-116 1-47 (50)
119 cd02335 ZZ_ADA2 Zinc finger, Z 97.0 0.00069 1.5E-08 45.7 3.2 43 34-78 2-48 (49)
120 cd02345 ZZ_dah Zinc finger, ZZ 97.0 0.00044 9.6E-09 46.7 2.1 32 34-65 2-35 (49)
121 cd00029 C1 Protein kinase C co 97.0 0.00064 1.4E-08 45.0 2.7 35 30-64 9-46 (50)
122 cd02339 ZZ_Mind_bomb Zinc fing 97.0 0.00053 1.2E-08 45.6 2.2 31 85-115 2-34 (45)
123 cd02343 ZZ_EF Zinc finger, ZZ 96.9 0.00047 1E-08 46.5 1.8 31 85-115 2-33 (48)
124 PLN03008 Phospholipase D delta 96.9 0.00041 8.8E-09 71.0 2.0 58 171-242 75-132 (868)
125 KOG4236 Serine/threonine prote 96.9 0.00022 4.8E-09 69.8 0.1 48 71-118 143-194 (888)
126 cd02249 ZZ Zinc finger, ZZ typ 96.9 0.00074 1.6E-08 44.9 2.3 32 84-115 1-33 (46)
127 cd02345 ZZ_dah Zinc finger, ZZ 96.8 0.00088 1.9E-08 45.3 2.3 31 85-115 2-34 (49)
128 smart00109 C1 Protein kinase C 96.8 0.00048 1E-08 45.1 0.7 35 30-64 9-45 (49)
129 smart00109 C1 Protein kinase C 96.7 0.00058 1.3E-08 44.8 0.9 35 82-116 10-46 (49)
130 cd02338 ZZ_PCMF_like Zinc fing 96.7 0.0012 2.6E-08 44.6 2.3 31 85-115 2-34 (49)
131 cd02334 ZZ_dystrophin Zinc fin 96.6 0.0014 3.1E-08 44.4 2.2 31 85-115 2-34 (49)
132 smart00291 ZnF_ZZ Zinc-binding 96.6 0.0012 2.5E-08 43.5 1.6 33 32-64 4-37 (44)
133 cd02337 ZZ_CBP Zinc finger, ZZ 96.6 0.0013 2.8E-08 42.9 1.8 37 34-77 2-39 (41)
134 smart00239 C2 Protein kinase C 96.6 0.0022 4.8E-08 46.4 3.2 42 195-240 36-77 (101)
135 KOG1328 Synaptic vesicle prote 96.5 0.0017 3.6E-08 65.4 2.9 95 140-242 934-1034(1103)
136 PF00569 ZZ: Zinc finger, ZZ t 96.5 0.00073 1.6E-08 45.0 0.3 32 32-63 4-37 (46)
137 PF00569 ZZ: Zinc finger, ZZ t 96.5 0.00081 1.7E-08 44.8 0.4 32 83-114 4-37 (46)
138 cd02341 ZZ_ZZZ3 Zinc finger, Z 96.5 0.0019 4.2E-08 43.6 2.0 32 84-115 1-36 (48)
139 cd02344 ZZ_HERC2 Zinc finger, 96.4 0.0023 4.9E-08 42.6 2.2 31 85-115 2-34 (45)
140 KOG4582 Uncharacterized conser 96.4 0.0015 3.3E-08 59.3 1.9 41 33-78 153-196 (278)
141 cd00030 C2 C2 domain. The C2 d 96.2 0.0044 9.5E-08 44.3 2.9 33 204-240 42-74 (102)
142 cd02342 ZZ_UBA_plant Zinc fing 96.2 0.0022 4.8E-08 42.2 1.0 31 85-115 2-34 (43)
143 cd02335 ZZ_ADA2 Zinc finger, Z 96.1 0.0051 1.1E-07 41.4 2.6 31 85-115 2-34 (49)
144 KOG1328 Synaptic vesicle prote 96.1 0.0013 2.9E-08 66.0 -0.3 79 153-240 116-219 (1103)
145 smart00291 ZnF_ZZ Zinc-binding 96.1 0.0032 6.9E-08 41.4 1.5 33 83-115 4-37 (44)
146 cd02337 ZZ_CBP Zinc finger, ZZ 95.5 0.0074 1.6E-07 39.3 1.4 31 84-115 1-32 (41)
147 KOG1280 Uncharacterized conser 95.3 0.014 3E-07 54.3 3.1 49 30-78 6-56 (381)
148 KOG1280 Uncharacterized conser 94.8 0.016 3.4E-07 53.9 1.9 35 82-116 7-43 (381)
149 PLN02952 phosphoinositide phos 94.6 0.014 3E-07 58.3 1.1 59 174-242 498-557 (599)
150 KOG4582 Uncharacterized conser 94.4 0.019 4E-07 52.3 1.5 32 84-115 153-186 (278)
151 cd04013 C2_SynGAP_like C2 doma 93.0 0.042 9.1E-07 45.3 1.1 66 151-236 11-76 (146)
152 KOG1013 Synaptic vesicle prote 92.7 0.084 1.8E-06 49.1 2.7 72 163-242 244-316 (362)
153 cd08689 C2_fungal_Pkc1p C2 dom 92.6 0.055 1.2E-06 42.6 1.2 27 204-236 42-68 (109)
154 KOG1013 Synaptic vesicle prote 91.8 0.063 1.4E-06 49.8 0.7 86 150-242 92-177 (362)
155 KOG0905 Phosphoinositide 3-kin 91.5 0.11 2.3E-06 55.2 2.1 93 141-243 1514-1609(1639)
156 KOG0695 Serine/threonine prote 89.9 0.11 2.5E-06 48.9 0.6 35 31-65 140-177 (593)
157 KOG1326 Membrane-associated pr 88.6 0.2 4.2E-06 52.4 1.2 72 155-241 617-690 (1105)
158 cd02336 ZZ_RSC8 Zinc finger, Z 87.8 0.3 6.4E-06 32.5 1.3 31 85-115 2-33 (45)
159 COG5038 Ca2+-dependent lipid-b 87.4 0.38 8.2E-06 51.1 2.4 71 155-240 440-512 (1227)
160 PLN02222 phosphoinositide phos 86.5 0.28 6E-06 49.0 0.9 61 173-242 479-539 (581)
161 KOG0956 PHD finger protein AF1 86.5 0.39 8.5E-06 48.6 1.8 87 30-116 46-158 (900)
162 KOG2807 RNA polymerase II tran 86.2 0.52 1.1E-05 43.8 2.3 85 30-115 261-363 (378)
163 PF13832 zf-HC5HC2H_2: PHD-zin 85.9 0.74 1.6E-05 35.5 2.8 79 34-115 2-88 (110)
164 KOG0169 Phosphoinositide-speci 85.2 0.72 1.6E-05 47.1 3.0 64 170-242 638-702 (746)
165 KOG2059 Ras GTPase-activating 85.2 0.63 1.4E-05 47.2 2.6 83 150-243 130-227 (800)
166 KOG0193 Serine/threonine prote 85.0 0.54 1.2E-05 47.1 2.0 36 30-65 187-222 (678)
167 KOG2996 Rho guanine nucleotide 84.5 0.32 6.9E-06 48.5 0.2 45 73-117 523-571 (865)
168 PLN02230 phosphoinositide phos 84.3 0.44 9.6E-06 47.8 1.1 61 173-242 496-556 (598)
169 KOG4286 Dystrophin-like protei 84.2 0.41 9E-06 48.8 0.8 34 82-115 602-637 (966)
170 KOG2059 Ras GTPase-activating 83.2 0.69 1.5E-05 46.9 1.9 71 153-241 7-79 (800)
171 PLN02223 phosphoinositide phos 82.9 0.57 1.2E-05 46.4 1.2 60 173-242 435-495 (537)
172 KOG0457 Histone acetyltransfer 81.6 0.74 1.6E-05 44.2 1.4 45 82-129 13-59 (438)
173 PF00628 PHD: PHD-finger; Int 81.0 1.5 3.3E-05 28.8 2.5 32 34-65 1-33 (51)
174 KOG1031 Predicted Ca2+-depende 80.2 1 2.2E-05 45.1 1.9 79 151-242 3-83 (1169)
175 KOG0957 PHD finger protein [Ge 79.2 1.2 2.5E-05 43.8 1.9 81 33-118 120-215 (707)
176 KOG0457 Histone acetyltransfer 78.2 1.6 3.5E-05 41.9 2.5 51 31-81 13-65 (438)
177 PF14446 Prok-RING_1: Prokaryo 77.5 1.5 3.3E-05 30.3 1.6 34 31-64 4-39 (54)
178 cd02336 ZZ_RSC8 Zinc finger, Z 76.5 1.5 3.3E-05 29.1 1.3 30 34-63 2-32 (45)
179 PF00628 PHD: PHD-finger; Int 76.5 3.2 6.9E-05 27.3 2.9 32 85-116 1-33 (51)
180 PF07191 zinc-ribbons_6: zinc- 75.7 1.2 2.5E-05 32.5 0.6 52 34-94 3-61 (70)
181 PLN02228 Phosphoinositide phos 75.1 1.1 2.4E-05 44.7 0.6 61 173-242 458-519 (567)
182 KOG4286 Dystrophin-like protei 74.8 1.3 2.8E-05 45.4 0.9 34 32-65 603-638 (966)
183 KOG0193 Serine/threonine prote 74.4 1.9 4.1E-05 43.4 1.9 37 82-118 188-224 (678)
184 smart00142 PI3K_C2 Phosphoinos 72.6 2.2 4.8E-05 32.5 1.6 34 207-241 62-95 (100)
185 KOG4367 Predicted Zn-finger pr 70.7 1.2 2.6E-05 43.1 -0.4 90 33-130 163-260 (699)
186 PF14569 zf-UDP: Zinc-binding 70.0 1.1 2.4E-05 33.2 -0.6 35 30-64 7-46 (80)
187 PF14446 Prok-RING_1: Prokaryo 69.6 2.7 5.7E-05 29.1 1.2 34 82-115 4-39 (54)
188 PF13831 PHD_2: PHD-finger; PD 69.5 1.6 3.5E-05 27.4 0.1 21 45-65 3-23 (36)
189 smart00249 PHD PHD zinc finger 68.9 4.6 0.0001 25.1 2.2 33 34-66 1-34 (47)
190 PLN02964 phosphatidylserine de 68.6 3.1 6.7E-05 42.3 2.0 36 204-243 90-125 (644)
191 smart00064 FYVE Protein presen 66.8 5.2 0.00011 27.9 2.4 33 32-64 10-44 (68)
192 COG5114 Histone acetyltransfer 65.0 3.2 6.9E-05 38.7 1.2 44 83-129 5-50 (432)
193 smart00249 PHD PHD zinc finger 61.8 6.6 0.00014 24.4 1.9 31 85-115 1-32 (47)
194 PF07754 DUF1610: Domain of un 61.4 6.4 0.00014 22.7 1.6 20 35-54 1-24 (24)
195 PF10367 Vps39_2: Vacuolar sor 60.1 6.5 0.00014 29.4 2.0 32 31-62 77-108 (109)
196 KOG4301 Beta-dystrobrevin [Cyt 58.5 3.4 7.3E-05 38.9 0.1 34 30-63 238-273 (434)
197 cd08398 C2_PI3K_class_I_alpha 57.0 6.4 0.00014 32.8 1.6 33 205-238 53-85 (158)
198 PF10367 Vps39_2: Vacuolar sor 56.5 9.1 0.0002 28.6 2.2 32 82-113 77-108 (109)
199 KOG0694 Serine/threonine prote 56.0 3.2 6.9E-05 42.2 -0.5 45 71-115 156-204 (694)
200 TIGR00622 ssl1 transcription f 55.9 13 0.00028 29.5 3.0 33 83-115 55-99 (112)
201 KOG0956 PHD finger protein AF1 55.3 7 0.00015 40.0 1.7 72 34-118 7-95 (900)
202 KOG2996 Rho guanine nucleotide 55.2 4.7 0.0001 40.5 0.5 42 17-63 524-568 (865)
203 smart00396 ZnF_UBR1 Putative z 54.3 14 0.0003 26.6 2.8 51 37-92 2-58 (71)
204 KOG1169 Diacylglycerol kinase 54.0 12 0.00025 38.0 3.1 86 29-114 106-211 (634)
205 KOG0957 PHD finger protein [Ge 52.4 3.5 7.6E-05 40.6 -0.8 84 31-116 169-276 (707)
206 KOG1327 Copine [Signal transdu 52.0 17 0.00037 36.1 3.8 90 140-239 121-218 (529)
207 cd08399 C2_PI3K_class_I_gamma 51.5 10 0.00022 32.4 1.9 35 205-240 57-91 (178)
208 cd08397 C2_PI3K_class_III C2 d 51.1 9.1 0.0002 31.8 1.6 32 207-239 60-91 (159)
209 KOG1169 Diacylglycerol kinase 49.7 7.4 0.00016 39.4 0.9 82 34-115 46-147 (634)
210 cd08693 C2_PI3K_class_I_beta_d 49.6 9.8 0.00021 32.1 1.5 35 205-240 55-89 (173)
211 KOG1011 Neurotransmitter relea 48.8 3.9 8.5E-05 41.6 -1.1 43 16-63 172-217 (1283)
212 KOG0825 PHD Zn-finger protein 48.4 11 0.00024 39.1 1.9 50 31-91 214-265 (1134)
213 smart00661 RPOL9 RNA polymeras 48.2 13 0.00028 24.4 1.7 22 85-106 2-29 (52)
214 KOG4239 Ras GTPase effector RA 47.5 2.7 6E-05 38.9 -2.3 34 31-64 61-97 (348)
215 PF09297 zf-NADH-PPase: NADH p 47.4 18 0.00039 21.7 2.1 23 83-105 3-29 (32)
216 KOG2807 RNA polymerase II tran 47.3 11 0.00024 35.3 1.6 33 31-63 329-362 (378)
217 PF13832 zf-HC5HC2H_2: PHD-zin 47.2 11 0.00023 28.9 1.3 32 31-63 54-87 (110)
218 PF12773 DZR: Double zinc ribb 47.1 14 0.00031 24.1 1.8 12 32-43 12-23 (50)
219 KOG4301 Beta-dystrobrevin [Cyt 46.7 6.3 0.00014 37.1 -0.1 32 82-113 239-272 (434)
220 PLN02436 cellulose synthase A 46.5 15 0.00032 39.5 2.5 34 32-65 36-74 (1094)
221 cd08380 C2_PI3K_like C2 domain 45.7 11 0.00023 30.8 1.1 34 205-239 56-89 (156)
222 PF07975 C1_4: TFIIH C1-like d 44.7 7.6 0.00016 26.5 0.1 30 34-63 1-38 (51)
223 KOG0955 PHD finger protein BR1 44.4 17 0.00036 39.1 2.6 75 30-118 217-306 (1051)
224 KOG4443 Putative transcription 43.6 9.9 0.00021 38.6 0.7 76 33-114 19-100 (694)
225 KOG0695 Serine/threonine prote 43.1 8.4 0.00018 36.7 0.1 45 73-117 130-178 (593)
226 PF13909 zf-H2C2_5: C2H2-type 42.4 13 0.00029 20.4 0.9 10 47-56 1-10 (24)
227 PF01363 FYVE: FYVE zinc finge 38.1 25 0.00055 24.4 2.0 34 82-115 8-43 (69)
228 COG5151 SSL1 RNA polymerase II 38.1 15 0.00033 34.2 1.0 84 31-115 294-406 (421)
229 PLN02638 cellulose synthase A 37.8 20 0.00043 38.6 1.9 33 32-64 17-54 (1079)
230 PF10571 UPF0547: Uncharacteri 37.6 19 0.00042 21.0 1.0 23 34-56 2-24 (26)
231 PF02148 zf-UBP: Zn-finger in 37.3 5.2 0.00011 27.9 -1.7 55 35-91 1-57 (63)
232 PLN02189 cellulose synthase 37.1 25 0.00054 37.7 2.5 34 32-65 34-72 (1040)
233 COG1198 PriA Primosomal protei 37.0 33 0.00071 35.5 3.3 31 75-106 453-484 (730)
234 PF15446 zf-PHD-like: PHD/FYVE 36.6 32 0.0007 29.3 2.7 32 34-65 1-36 (175)
235 PF07282 OrfB_Zn_ribbon: Putat 36.6 24 0.00053 24.6 1.7 29 30-58 26-58 (69)
236 TIGR00622 ssl1 transcription f 36.2 42 0.0009 26.6 3.1 32 32-63 55-98 (112)
237 COG0675 Transposase and inacti 35.2 24 0.00051 31.4 1.8 29 29-58 306-334 (364)
238 PLN02195 cellulose synthase A 35.1 25 0.00053 37.5 2.1 34 32-65 6-44 (977)
239 PF13240 zinc_ribbon_2: zinc-r 34.9 23 0.00049 20.0 1.0 19 35-53 2-20 (23)
240 PRK04023 DNA polymerase II lar 34.2 31 0.00067 37.0 2.6 21 83-105 651-671 (1121)
241 PF14803 Nudix_N_2: Nudix N-te 34.0 23 0.0005 22.0 1.0 22 34-55 2-31 (34)
242 PRK14890 putative Zn-ribbon RN 33.2 36 0.00079 23.9 2.0 9 34-42 9-17 (59)
243 PF04438 zf-HIT: HIT zinc fing 33.1 28 0.00061 20.9 1.3 22 83-107 2-23 (30)
244 PF15499 Peptidase_C98: Ubiqui 33.1 32 0.00069 31.3 2.2 45 46-92 134-179 (275)
245 PF00412 LIM: LIM domain; Int 32.1 32 0.00069 22.7 1.6 9 85-93 28-36 (58)
246 PRK14873 primosome assembly pr 31.2 41 0.00088 34.4 2.9 21 82-104 409-429 (665)
247 COG0675 Transposase and inacti 31.2 33 0.00073 30.4 2.1 28 82-110 308-335 (364)
248 PF00643 zf-B_box: B-box zinc 30.9 21 0.00046 22.3 0.6 29 33-63 4-32 (42)
249 PF08746 zf-RING-like: RING-li 30.8 20 0.00044 23.3 0.4 29 86-115 1-31 (43)
250 PRK12442 translation initiatio 30.4 32 0.00069 26.1 1.5 21 218-241 45-65 (87)
251 PLN02915 cellulose synthase A 30.2 27 0.00058 37.5 1.4 35 31-65 14-53 (1044)
252 COG0361 InfA Translation initi 30.0 32 0.0007 25.3 1.4 20 220-242 47-66 (75)
253 KOG1512 PHD Zn-finger protein 29.9 20 0.00043 33.1 0.4 83 31-115 257-347 (381)
254 COG2888 Predicted Zn-ribbon RN 29.8 43 0.00092 23.7 1.9 9 46-54 50-58 (61)
255 PLN02400 cellulose synthase 29.4 35 0.00076 36.8 2.1 34 32-65 36-74 (1085)
256 TIGR00008 infA translation ini 29.2 32 0.00069 24.8 1.3 21 219-242 44-64 (68)
257 KOG1244 Predicted transcriptio 28.7 43 0.00092 30.8 2.2 33 33-65 282-315 (336)
258 cd04012 C2A_PI3K_class_II C2 d 28.4 31 0.00067 28.7 1.3 33 207-240 63-95 (171)
259 PF02207 zf-UBR: Putative zinc 28.4 46 0.00099 23.7 2.0 50 37-92 2-58 (71)
260 PF07227 DUF1423: Protein of u 28.1 58 0.0013 31.8 3.1 34 31-64 122-164 (446)
261 KOG3623 Homeobox transcription 27.0 9.9 0.00021 39.2 -2.3 51 30-94 892-961 (1007)
262 cd00065 FYVE FYVE domain; Zinc 26.9 43 0.00092 22.2 1.5 32 33-64 3-36 (57)
263 KOG4323 Polycomb-like PHD Zn-f 26.5 38 0.00083 33.2 1.6 55 31-92 167-224 (464)
264 PLN02270 phospholipase D alpha 26.4 26 0.00056 36.6 0.5 32 171-212 45-78 (808)
265 COG5114 Histone acetyltransfer 25.7 54 0.0012 30.8 2.4 34 31-64 4-39 (432)
266 KOG1044 Actin-binding LIM Zn-f 25.4 27 0.00058 35.2 0.4 29 31-59 132-173 (670)
267 KOG1244 Predicted transcriptio 24.4 42 0.00092 30.8 1.4 77 32-115 224-314 (336)
268 PF09332 Mcm10: Mcm10 replicat 23.3 24 0.00052 33.3 -0.4 59 46-113 252-319 (344)
269 PF06524 NOA36: NOA36 protein; 23.0 30 0.00065 31.6 0.2 71 33-111 126-199 (314)
270 PHA00626 hypothetical protein 22.5 65 0.0014 22.5 1.7 14 97-110 23-36 (59)
271 PF13894 zf-C2H2_4: C2H2-type 22.3 44 0.00095 17.4 0.8 8 47-54 1-8 (24)
272 PRK13413 mpi multiple promoter 22.3 41 0.0009 28.4 0.9 23 216-243 55-77 (200)
273 KOG0955 PHD finger protein BR1 22.2 65 0.0014 34.8 2.5 36 82-117 218-256 (1051)
274 cd03768 SR_ResInv Serine Recom 21.7 54 0.0012 25.0 1.4 23 216-243 48-70 (126)
275 PF13842 Tnp_zf-ribbon_2: DDE_ 21.6 76 0.0016 19.3 1.8 25 34-58 2-28 (32)
276 TIGR00416 sms DNA repair prote 21.2 56 0.0012 31.7 1.7 23 82-104 6-28 (454)
277 PRK11823 DNA repair protein Ra 21.2 55 0.0012 31.7 1.6 23 82-104 6-28 (446)
278 smart00154 ZnF_AN1 AN1-like Zi 20.7 85 0.0018 19.9 1.9 23 35-57 1-23 (39)
279 PF13901 DUF4206: Domain of un 20.7 70 0.0015 27.6 2.0 32 31-62 151-188 (202)
280 PF13771 zf-HC5HC2H: PHD-like 20.7 68 0.0015 23.3 1.7 34 82-116 35-70 (90)
281 PF00301 Rubredoxin: Rubredoxi 20.5 50 0.0011 22.0 0.9 15 46-60 1-15 (47)
282 KOG1326 Membrane-associated pr 20.5 31 0.00067 36.8 -0.2 71 152-241 207-290 (1105)
No 1
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-55 Score=409.05 Aligned_cols=192 Identities=22% Similarity=0.422 Sum_probs=172.2
Q ss_pred cccccccccccCCCCC---cEEeCCCCCccccccccCCC----------cCCCCCCCCcceEeec-CcccccccccCCCC
Q 043301 30 DVVIICDICETSLQGP---AYGCGTCEFSIHKSCAELPL----------KIDHPFHCHPLTLSKT-NHHRCDACLDECSG 95 (244)
Q Consensus 30 ~~~~~C~~C~~~i~g~---~Y~C~~C~F~lH~~Ca~~p~----------~i~hp~H~H~L~L~~~-~~~~Cd~Cg~~~~g 95 (244)
..+++|++|.++|||+ +|+|++|.|++|++|+++.. ..+.|..+|.+++++| ++++||+||+.++|
T Consensus 54 KqPTfCsHCkDFiwGfgKQGfQCqvC~fvvHkrChefVtF~CPGadkg~dtDdpr~kHkf~~~tYssPTFCDhCGsLLyG 133 (683)
T KOG0696|consen 54 KQPTFCSHCKDFIWGFGKQGFQCQVCCFVVHKRCHEFVTFSCPGADKGPDTDDPRSKHKFKIHTYSSPTFCDHCGSLLYG 133 (683)
T ss_pred cCCchhhhhhhheeccccCceeeeEEeehhhhhhcceEEEECCCCCCCCCCCCcccccceeeeecCCCchhhhHHHHHHH
Confidence 5689999999999986 79999999999999999742 2466778999999999 99999999999988
Q ss_pred e---eEEcCCccceeccccccCcCccccCccccCCcCccccccccCCCCcEEEEEeccCCcceeeecccccccccCCCCc
Q 043301 96 M---AYRCHECCYNLHYHCTALKPSINFKELKCVLHEVMQSLLEKQPQDVELRTIQERNPEDLTFHDVFSSFTEKDRNQL 172 (244)
Q Consensus 96 ~---~Y~C~~Cd~~lH~~Ca~~p~~i~~~~~~h~~H~h~l~L~~~~p~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~n~l 172 (244)
. +++|+.|++++|.+|+..+|++ |+.+|++.+ |++.+.+.++++.|.++|.||. ||||||||||
T Consensus 134 l~HQGmKC~~C~mNVH~rCv~nVPsl--CG~DhtE~R----------Grl~l~~~~~~~~l~v~i~ea~-NLiPMDpNGl 200 (683)
T KOG0696|consen 134 LIHQGMKCDTCDMNVHHRCVENVPSL--CGTDHTERR----------GRLYLEAHIKRDVLTVTIKEAK-NLIPMDPNGL 200 (683)
T ss_pred HHhcccccccccchHHHHHhhcCCcc--cCCcchhhc----------ceEEEEEEecCceEEEEehhhc-cccccCCCCC
Confidence 6 6999999999999999999999 999999998 9999999999999999999998 5999999999
Q ss_pred chhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEEEEeccCccccc
Q 043301 173 DDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVEFWDLDDVLVN 242 (244)
Q Consensus 173 ~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (244)
||||+++| +++.-...+||+||++.+++||.||| +|+|+|+|+|+|||||||||||||||||
T Consensus 201 SDPYvk~k-----liPD~~~~sKqKTkTik~~LNP~wNE---tftf~Lkp~DkdrRlsiEvWDWDrTsRN 262 (683)
T KOG0696|consen 201 SDPYVKLK-----LIPDPKNESKQKTKTIKATLNPVWNE---TFTFKLKPSDKDRRLSIEVWDWDRTSRN 262 (683)
T ss_pred CCcceeEE-----eccCCcchhhhhhhhhhhhcCccccc---eeEEecccccccceeEEEEecccccccc
Confidence 99998854 22222223899999666688888888 6999999999999999999999999999
No 2
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.24 E-value=3.4e-12 Score=101.55 Aligned_cols=89 Identities=15% Similarity=0.148 Sum_probs=69.5
Q ss_pred CCcEEEEEeccCCcceeeecccccccccCCCCcchhhHHHHhhhhccccccccc----CCCCceeEeecCCCCChhhhhh
Q 043301 140 QDVELRTIQERNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSET----GDQGSKVTISESYPYSDDTLAQ 215 (244)
Q Consensus 140 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~----~~~~~~~~i~~~~~~~~~~~~~ 215 (244)
|++++...-..+.+.+.|-+|.+ |.++| +|.+|||++ ..|.|. .+++|++.-.+.+|.||| +
T Consensus 2 G~l~~~l~y~~~~L~V~Vi~A~~-L~~~~-~~~~DpyVk---------v~l~~~~~~~~~~kT~v~~~~~nP~wnE---~ 67 (122)
T cd08381 2 GQVKLSISYKNGTLFVMVMHAKN-LPLLD-GSDPDPYVK---------TYLLPDPQKTTKRKTKVVRKTRNPTFNE---M 67 (122)
T ss_pred CeEEEEEEEeCCEEEEEEEEeeC-CCCCC-CCCCCCEEE---------EEEeeCCccCCceeCCccCCCCCCCccc---E
Confidence 55666665567778899999985 89999 999999988 445443 466788555688888888 6
Q ss_pred hhhhcCC--CCccceeEEEEeccCccccc
Q 043301 216 FILRLQN--SLRSKNMSVEFWDLDDVLVN 242 (244)
Q Consensus 216 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 242 (244)
|.|.+.+ +..++.|.|+|||||+.++|
T Consensus 68 F~f~~~~~~~l~~~~L~~~V~d~d~~~~~ 96 (122)
T cd08381 68 LVYDGLPVEDLQQRVLQVSVWSHDSLVEN 96 (122)
T ss_pred EEEecCChHHhCCCEEEEEEEeCCCCcCC
Confidence 9999843 34678999999999999876
No 3
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.23 E-value=4.3e-12 Score=103.43 Aligned_cols=83 Identities=6% Similarity=0.011 Sum_probs=61.2
Q ss_pred CcceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecC-CCCChhhhhhhhhhcCCCCccceeE
Q 043301 152 PEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISES-YPYSDDTLAQFILRLQNSLRSKNMS 230 (244)
Q Consensus 152 ~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (244)
.|++.|-+|+ +|.+|+-++..|||+++. +...-....++||.+.-.++ +|+||| +|+|++.+++.+.+|.
T Consensus 15 rLtV~Vikar-nL~~~~~~~~~dpYVKV~-----L~~~~k~~~KkKT~v~k~t~~~P~fNE---sF~Fdv~~~~~~v~l~ 85 (135)
T cd08692 15 RIQLQILEAQ-NLPSSSTPLTLSFFVKVG-----MFSTGGLLYKKKTRLVKSSNGQVKWGE---TMIFPVTQQEHGIQFL 85 (135)
T ss_pred eEEEEEEEcc-CCCcccCCCCCCcEEEEE-----EEECCCcceeecCccEECCCCCceecc---eEEEeCCchhheeEEE
Confidence 4668899998 589996455557998854 11111112567777444453 688888 6999999999999999
Q ss_pred EEEeccCcccccC
Q 043301 231 VEFWDLDDVLVNV 243 (244)
Q Consensus 231 ~~~~~~~~~~~~~ 243 (244)
|+|||||++++|-
T Consensus 86 v~v~d~~~~~~n~ 98 (135)
T cd08692 86 IKLYSRSSVRRKH 98 (135)
T ss_pred EEEEeCCCCcCCc
Confidence 9999999999983
No 4
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.19 E-value=1.7e-11 Score=101.12 Aligned_cols=89 Identities=16% Similarity=0.227 Sum_probs=73.4
Q ss_pred CCcEEEEEeccCCcceeeecccccccccC-CCCcchhhHHHHhhhhccccccccc----CCCCceeEeecCCCCChhhhh
Q 043301 140 QDVELRTIQERNPEDLTFHDVFSSFTEKD-RNQLDDITENIESEIAGIKKTLSET----GDQGSKVTISESYPYSDDTLA 214 (244)
Q Consensus 140 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~n~l~d~~~~~~~~~~~~~~~l~~~----~~~~~~~~i~~~~~~~~~~~~ 214 (244)
|++++.+.-..+.|.++|-.|.+ |.++| .+|.+|||++ ..|-++ .+++|++.-.+.+|.|||
T Consensus 18 G~l~lsl~y~~~~L~V~Vi~Arn-L~~~~~~~g~sDPYVK---------v~Llp~~~~~~k~KT~v~kktlnPvfNE--- 84 (146)
T cd04028 18 GDIQLGLYDKKGQLEVEVIRARG-LVQKPGSKVLPAPYVK---------VYLLEGKKCIAKKKTKIARKTLDPLYQQ--- 84 (146)
T ss_pred ceEEEEEEeCCCEEEEEEEEeeC-CCcccCCCCCcCCeEE---------EEEECCCccccceeceecCCCCCCccCC---
Confidence 77777776677889999999985 88875 7899999988 555554 377888666799999998
Q ss_pred hhhhhcCCCCccceeEEEEe-ccCcccccC
Q 043301 215 QFILRLQNSLRSKNMSVEFW-DLDDVLVNV 243 (244)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 243 (244)
+|.|.+. ..++.|.|+|| |||+.++|.
T Consensus 85 ~F~f~v~--l~~~~L~v~V~~d~~~~~~~~ 112 (146)
T cd04028 85 QLVFDVS--PTGKTLQVIVWGDYGRMDKKV 112 (146)
T ss_pred eEEEEEc--CCCCEEEEEEEeCCCCCCCCc
Confidence 6999988 78899999999 899988874
No 5
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.18 E-value=9.4e-12 Score=98.73 Aligned_cols=88 Identities=11% Similarity=0.100 Sum_probs=70.8
Q ss_pred CCcEEEEEeccCCcceeeecccccccccCCCCcchhhHHHHhhhhccccccccc----CCCCceeEeecCCCCChhhhhh
Q 043301 140 QDVELRTIQERNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSET----GDQGSKVTISESYPYSDDTLAQ 215 (244)
Q Consensus 140 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~----~~~~~~~~i~~~~~~~~~~~~~ 215 (244)
|++++......+.|.++|.+|.+ |.+|| +|.+|||++ ..|-|. .+++|++.-.+.+|.||| +
T Consensus 1 G~l~l~~~~~~~~L~V~Vi~ar~-L~~~~-~g~~dpYVk---------v~l~p~~~~~~~~kT~v~~~t~~P~~nE---~ 66 (119)
T cd08685 1 GQLKLSIEGQNRKLTLHVLEAKG-LRSTN-SGTCNSYVK---------ISLSPDKEVRFRQKTSTVPDSANPLFHE---T 66 (119)
T ss_pred CEEEEEEEEcCCEEEEEEEEEEC-CCCCC-CCCCCeeEE---------EEEEeCCCCcceEeCccccCCCCCcccc---E
Confidence 45666666677889999999985 89999 999999988 444443 455788555688899988 6
Q ss_pred hhhhcCCCCccceeEEEEeccCcccc
Q 043301 216 FILRLQNSLRSKNMSVEFWDLDDVLV 241 (244)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (244)
|.|.+..++.+++|.|+|||.|+.++
T Consensus 67 F~f~v~~~~~~~~l~v~V~~~~~~~~ 92 (119)
T cd08685 67 FSFDVNERDYQKRLLVTVWNKLSKSR 92 (119)
T ss_pred EEEEcChHHhCCEEEEEEECCCCCcC
Confidence 99999988888899999999998764
No 6
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.10 E-value=4.4e-11 Score=97.28 Aligned_cols=80 Identities=8% Similarity=0.065 Sum_probs=64.7
Q ss_pred cCCcceeeecccccccccCCCCcchhhHHHHhhhhccccccccc----CCCCceeEeecCCCCChhhhhhhhhhcCCCC-
Q 043301 150 RNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSET----GDQGSKVTISESYPYSDDTLAQFILRLQNSL- 224 (244)
Q Consensus 150 ~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~- 224 (244)
.+.|.++|-.|.+ |.++|.+|.+|||++ ..|.++ .+++|++.-.+.||.||| +|.|++..++
T Consensus 14 ~~~L~V~Vi~A~n-L~~~~~~g~~DpyVk---------v~l~~~~~~~~k~kT~v~k~t~nP~~nE---~f~F~v~~~~l 80 (136)
T cd08406 14 AERLTVVVVKARN-LVWDNGKTTADPFVK---------VYLLQDGRKISKKKTSVKRDDTNPIFNE---AMIFSVPAIVL 80 (136)
T ss_pred CCEEEEEEEEeeC-CCCccCCCCCCeEEE---------EEEEeCCccccccCCccccCCCCCeece---eEEEECCHHHh
Confidence 3467799999985 899999999999987 445444 355777555688898888 6999998764
Q ss_pred ccceeEEEEeccCccccc
Q 043301 225 RSKNMSVEFWDLDDVLVN 242 (244)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~ 242 (244)
.+..|.|+|||||+.++|
T Consensus 81 ~~~~l~~~V~~~d~~~~~ 98 (136)
T cd08406 81 QDLSLRVTVAESTEDGKT 98 (136)
T ss_pred CCcEEEEEEEeCCCCCCC
Confidence 578899999999999887
No 7
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.06 E-value=1e-10 Score=93.29 Aligned_cols=91 Identities=12% Similarity=0.159 Sum_probs=68.2
Q ss_pred CCcEEEEEec--cCCcceeeecccccccccCCC-CcchhhHHHHhhhhccccccccc----CCCCceeEeecCCCCChhh
Q 043301 140 QDVELRTIQE--RNPEDLTFHDVFSSFTEKDRN-QLDDITENIESEIAGIKKTLSET----GDQGSKVTISESYPYSDDT 212 (244)
Q Consensus 140 ~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~n-~l~d~~~~~~~~~~~~~~~l~~~----~~~~~~~~i~~~~~~~~~~ 212 (244)
|++++...-. .+.|.++|-.|.+ |.++|.+ |.+|||+++ .|.|. .+++|++.-.+.+|.|||
T Consensus 2 G~i~~sl~y~~~~~~L~V~vi~a~~-L~~~d~~~g~~dpyVkv---------~l~p~~~~~~~~kT~v~~~t~nP~~nE- 70 (125)
T cd08393 2 GSVQFALDYDPKLRELHVHVIQCQD-LAAADPKKQRSDPYVKT---------YLLPDKSNRGKRKTSVKKKTLNPVFNE- 70 (125)
T ss_pred cEEEEEEEEECCCCEEEEEEEEeCC-CCCcCCCCCCCCcEEEE---------EEEcCCCccccccCccCcCCCCCccCc-
Confidence 4444444432 4468899999985 8999986 899999873 34332 456788555688899998
Q ss_pred hhhhhhhcCCCC-ccceeEEEEeccCcccccC
Q 043301 213 LAQFILRLQNSL-RSKNMSVEFWDLDDVLVNV 243 (244)
Q Consensus 213 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 243 (244)
+|.|.+..++ .++.|.|+|||+|+.++|-
T Consensus 71 --~f~f~v~~~~l~~~~L~~~V~d~~~~~~~~ 100 (125)
T cd08393 71 --TLRYKVEREELPTRVLNLSVWHRDSLGRNS 100 (125)
T ss_pred --eEEEECCHHHhCCCEEEEEEEeCCCCCCCc
Confidence 6999998764 5578999999999998873
No 8
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.02 E-value=1.9e-10 Score=93.89 Aligned_cols=81 Identities=11% Similarity=0.122 Sum_probs=63.7
Q ss_pred ccCCcceeeecccccccccCCC--CcchhhHHHHhhhhccccccccc----CCCCceeEeecCCCCChhhhhhhhhhcCC
Q 043301 149 ERNPEDLTFHDVFSSFTEKDRN--QLDDITENIESEIAGIKKTLSET----GDQGSKVTISESYPYSDDTLAQFILRLQN 222 (244)
Q Consensus 149 ~~~~~~~~v~~~~~~~~~~~~n--~l~d~~~~~~~~~~~~~~~l~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 222 (244)
..+.|.++|-.|. +|.+||.+ +-+|||+++. |-+. ++++|+..-.+.||.||| .|+|++..
T Consensus 13 ~~~~L~V~V~kar-nL~~~d~~~~~~~DpYVKv~---------l~~~~~k~~kkkT~v~k~t~nPvfNE---~f~F~v~~ 79 (138)
T cd08407 13 AANRLLVVVIKAK-NLHSDQLKLLLGIDVSVKVT---------LKHQNAKLKKKQTKRAKHKINPVWNE---MIMFELPS 79 (138)
T ss_pred CCCeEEEEEEEec-CCCccccCCCCCCCeEEEEE---------EEcCCcccceeccceeeCCCCCcccc---EEEEECCH
Confidence 3567889999998 58999944 4489998843 4443 456788565688888888 69999987
Q ss_pred CC-ccceeEEEEeccCccccc
Q 043301 223 SL-RSKNMSVEFWDLDDVLVN 242 (244)
Q Consensus 223 ~~-~~~~~~~~~~~~~~~~~~ 242 (244)
++ .++.|.|+|||+|+.++|
T Consensus 80 ~~L~~~~L~~~V~d~d~~~~~ 100 (138)
T cd08407 80 ELLAASSVELEVLNQDSPGQS 100 (138)
T ss_pred HHhCccEEEEEEEeCCCCcCc
Confidence 75 478899999999999987
No 9
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.02 E-value=1.5e-10 Score=93.13 Aligned_cols=90 Identities=11% Similarity=0.146 Sum_probs=69.3
Q ss_pred CCcEEEEEec--cCCcceeeecccccccccCCC-CcchhhHHHHhhhhcccccccccC----CCCceeEeecCCCCChhh
Q 043301 140 QDVELRTIQE--RNPEDLTFHDVFSSFTEKDRN-QLDDITENIESEIAGIKKTLSETG----DQGSKVTISESYPYSDDT 212 (244)
Q Consensus 140 ~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~n-~l~d~~~~~~~~~~~~~~~l~~~~----~~~~~~~i~~~~~~~~~~ 212 (244)
|++++...-. .+.|.++|-.|.+ |.++|.+ |..|||++ ..|.|.. +++|++.-.+.+|.|||
T Consensus 2 G~i~~sl~Y~~~~~~L~V~V~~a~n-L~~~d~~~g~~dpYVk---------v~llp~~~~~~k~kT~v~~~t~nPvfNE- 70 (128)
T cd08392 2 GEIEFALHYNFRTSCLEITIKACRN-LAYGDEKKKKCHPYVK---------VCLLPDKSHNSKRKTAVKKGTVNPVFNE- 70 (128)
T ss_pred cEEEEEEEEeCCCCEEEEEEEecCC-CCccCCCCCCCCeEEE---------EEEEeCCcccceeecccccCCCCCccce-
Confidence 5555555433 5678899999985 8999986 99999987 4455543 55788555688999998
Q ss_pred hhhhhhhcCCCC-ccceeEEEEeccCccccc
Q 043301 213 LAQFILRLQNSL-RSKNMSVEFWDLDDVLVN 242 (244)
Q Consensus 213 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 242 (244)
+|.|.+..++ .++.|.|.|||+|+.++|
T Consensus 71 --~F~f~v~~~~l~~~~L~v~V~~~~~~~~~ 99 (128)
T cd08392 71 --TLKYVVEADLLSSRQLQVSVWHSRTLKRR 99 (128)
T ss_pred --EEEEEcCHHHhCCcEEEEEEEeCCCCcCc
Confidence 6999997764 468999999999998776
No 10
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=98.99 E-value=2e-10 Score=92.08 Aligned_cols=81 Identities=7% Similarity=0.057 Sum_probs=65.2
Q ss_pred cCCcceeeecccccccccCCCCcchhhHHHHhhhhcccccccccC-----CCCceeEeecCCCCChhhhhhhhhhcCCCC
Q 043301 150 RNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETG-----DQGSKVTISESYPYSDDTLAQFILRLQNSL 224 (244)
Q Consensus 150 ~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~-----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 224 (244)
.+.|.++|..|+ +|.+|+.+|.+|||++ ..|-|.. +.+|++.-.+.+|.||| +|.|.+.+++
T Consensus 13 ~~~L~V~V~~ar-nL~~~~~~~~~dpyVK---------v~Llp~~~~~~~~~kT~v~~~t~nPvfnE---~F~f~v~~~~ 79 (124)
T cd08680 13 DSSLVISVEQLR-NLSALSIPENSKVYVR---------VALLPCSSSTSCLFRTKALEDQDKPVFNE---VFRVPISSTK 79 (124)
T ss_pred CCEEEEEEeEec-CCcccccCCCCCeEEE---------EEEccCCCCCCceEEcCccCCCCCCcccc---EEEEECCHHH
Confidence 345779999998 5899999999999987 4444443 56677555688999998 6999998875
Q ss_pred -ccceeEEEEeccCcccccC
Q 043301 225 -RSKNMSVEFWDLDDVLVNV 243 (244)
Q Consensus 225 -~~~~~~~~~~~~~~~~~~~ 243 (244)
.++.|.|.|||+|+.++|-
T Consensus 80 L~~~~L~~~V~~~~~~~~~~ 99 (124)
T cd08680 80 LYQKTLQVDVCSVGPDQQEE 99 (124)
T ss_pred hhcCEEEEEEEeCCCCCcee
Confidence 5599999999999998874
No 11
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=98.98 E-value=1.8e-10 Score=91.91 Aligned_cols=78 Identities=4% Similarity=0.008 Sum_probs=59.9
Q ss_pred cCCcceeeecccccccccCCCCcchhhHHHHhhhhccccccccc---CCCCceeEeecCCCCChhhhhhhhhhcCCCC-c
Q 043301 150 RNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSET---GDQGSKVTISESYPYSDDTLAQFILRLQNSL-R 225 (244)
Q Consensus 150 ~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~ 225 (244)
.+.|+++|-+|.+ |- + .|.+|||++ ..|-+. .+++|+..-+++||+||| +|+|++..++ .
T Consensus 13 ~~~L~V~vikA~~-L~-~--~g~sDPYVK---------v~L~~~~k~~k~kT~v~rktlnPvfnE---~f~F~v~~~~l~ 76 (118)
T cd08677 13 KAELHVNILEAEN-IS-V--DAGCECYIS---------GCVSVSEGQKEAQTALKKLALHTQWEE---ELVFPLPEEESL 76 (118)
T ss_pred CCEEEEEEEEecC-CC-C--CCCCCeEEE---------EEEcCCcCccEEEcceecCCCCCcccc---EEEEeCCHHHhC
Confidence 5567799999975 44 4 466999987 444432 466677555599999998 6999998884 5
Q ss_pred cceeEEEEeccCcccccC
Q 043301 226 SKNMSVEFWDLDDVLVNV 243 (244)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~ 243 (244)
++-|.+.|||+||.|||-
T Consensus 77 ~~tL~~~V~d~Drfs~~d 94 (118)
T cd08677 77 DGTLTLTLRCCDRFSRHS 94 (118)
T ss_pred CcEEEEEEEeCCCCCCCc
Confidence 678999999999999983
No 12
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=98.98 E-value=3.7e-10 Score=90.14 Aligned_cols=90 Identities=8% Similarity=0.181 Sum_probs=66.9
Q ss_pred CCcEEEEEe--ccCCcceeeecccccccccCC-CCcchhhHHHHhhhhccccccccc----CCCCceeEeecCCCCChhh
Q 043301 140 QDVELRTIQ--ERNPEDLTFHDVFSSFTEKDR-NQLDDITENIESEIAGIKKTLSET----GDQGSKVTISESYPYSDDT 212 (244)
Q Consensus 140 ~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~-n~l~d~~~~~~~~~~~~~~~l~~~----~~~~~~~~i~~~~~~~~~~ 212 (244)
|++++...- ..+.|.+.|-+|.+ |.++|. +|.+|||+++ .|.|. .+++|++.-.+.+|.|||
T Consensus 2 G~i~~sl~y~~~~~~L~V~Vi~a~~-L~~~~~~~~~~DpyVkv---------~l~p~~~~~~~~kT~v~~~t~nP~wnE- 70 (125)
T cd04029 2 GEILFSLSYDYKTQSLNVHVKECRN-LAYGDEAKKRSNPYVKT---------YLLPDKSRQSKRKTSIKRNTTNPVYNE- 70 (125)
T ss_pred cEEEEEEEEECCCCeEEEEEEEecC-CCccCCCCCCCCcEEEE---------EEEcCCccccceEeeeeeCCCCCcccc-
Confidence 455555544 35568899999985 788874 6899999883 34443 356777444578899998
Q ss_pred hhhhhhhcCCCC-ccceeEEEEeccCccccc
Q 043301 213 LAQFILRLQNSL-RSKNMSVEFWDLDDVLVN 242 (244)
Q Consensus 213 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 242 (244)
+|.|.+..++ .++.|.|+|||||+.++|
T Consensus 71 --~f~f~i~~~~l~~~~L~~~V~d~~~~~~~ 99 (125)
T cd04029 71 --TLKYSISHSQLETRTLQLSVWHYDRFGRN 99 (125)
T ss_pred --eEEEECCHHHhCCCEEEEEEEECCCCCCC
Confidence 6999998765 567899999999998776
No 13
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=98.92 E-value=6.9e-10 Score=90.33 Aligned_cols=80 Identities=9% Similarity=0.099 Sum_probs=64.8
Q ss_pred cCCcceeeecccccccccCCCCcchhhHHHHhhhhccccccccc-----CCCCceeEeecCCCCChhhhhhhhhhcCCCC
Q 043301 150 RNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSET-----GDQGSKVTISESYPYSDDTLAQFILRLQNSL 224 (244)
Q Consensus 150 ~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~-----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 224 (244)
.+.|.++|-.|++ |.+++.+|..|||++ ..|-|. .+.+|+..-.+.+|.||| +|.|.+..++
T Consensus 14 ~~~L~V~Vikarn-L~~~~~~~~~dpyVk---------v~llp~~~~~~~~~kT~v~~~t~nPvfnE---tF~f~i~~~~ 80 (138)
T cd08408 14 TGRLSVEVIKGSN-FKNLAMNKAPDTYVK---------LTLLNSDGQEISKSKTSIRRGQPDPEFKE---TFVFQVALFQ 80 (138)
T ss_pred CCeEEEEEEEecC-CCccccCCCCCeeEE---------EEEEeCCCcceeeccceeecCCCCCcEee---eEEEECCHHH
Confidence 4667899999985 899999999999988 445442 245787555578899998 6999999875
Q ss_pred -ccceeEEEEeccCccccc
Q 043301 225 -RSKNMSVEFWDLDDVLVN 242 (244)
Q Consensus 225 -~~~~~~~~~~~~~~~~~~ 242 (244)
.++.|.|+|||+|+.++|
T Consensus 81 l~~~~L~~~V~~~~~~~~~ 99 (138)
T cd08408 81 LSEVTLMFSVYNKRKMKRK 99 (138)
T ss_pred hCccEEEEEEEECCCCCCC
Confidence 679999999999998776
No 14
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=98.92 E-value=6.3e-10 Score=88.62 Aligned_cols=89 Identities=10% Similarity=0.150 Sum_probs=66.3
Q ss_pred CCcEEEEEec--cCCcceeeecccccccccCCCCcchhhHHHHhhhhccccccccc--CCCCceeEeecCCCCChhhhhh
Q 043301 140 QDVELRTIQE--RNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSET--GDQGSKVTISESYPYSDDTLAQ 215 (244)
Q Consensus 140 ~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~--~~~~~~~~i~~~~~~~~~~~~~ 215 (244)
|++++.+.-. ...|.++|-.|.+ |.++|.+|.+|||++ ..+.|. .+++|+ +++..+|.||| +
T Consensus 3 G~l~~sl~Y~~~~~~L~V~Vi~a~n-L~~~~~~~~~d~yVk---------~~llp~~~~~~kTk-v~~~~nP~fnE---~ 68 (124)
T cd08389 3 GDLDVAFEYDPSARKLTVTVIRAQD-IPTKDRGGASSWQVH---------LVLLPSKKQRAKTK-VQRGPNPVFNE---T 68 (124)
T ss_pred EEEEEEEEECCCCCEEEEEEEEecC-CCchhcCCCCCcEEE---------EEEccCCcceeecc-cccCCCCcccC---E
Confidence 5555555443 4568899999985 899999999999976 334333 345666 44458888887 6
Q ss_pred hhhh-cCCCC-ccceeEEEEeccCccccc
Q 043301 216 FILR-LQNSL-RSKNMSVEFWDLDDVLVN 242 (244)
Q Consensus 216 ~~~~-~~~~~-~~~~~~~~~~~~~~~~~~ 242 (244)
|.|. +.+++ .++.|.++|||||+.++|
T Consensus 69 F~f~~i~~~~l~~~~L~~~V~~~~~~~~~ 97 (124)
T cd08389 69 FTFSRVEPEELNNMALRFRLYGVERMRKE 97 (124)
T ss_pred EEECCCCHHHhccCEEEEEEEECCCcccC
Confidence 9998 66654 678999999999998876
No 15
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=98.91 E-value=7.2e-10 Score=89.48 Aligned_cols=80 Identities=10% Similarity=0.117 Sum_probs=60.4
Q ss_pred cCCcceeeecccccccccCCCCcchhhHHHHhhhhcccccccc----cCCCCceeEeecCCCCChhhhhhhhhhcCCCCc
Q 043301 150 RNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSE----TGDQGSKVTISESYPYSDDTLAQFILRLQNSLR 225 (244)
Q Consensus 150 ~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 225 (244)
.+.+.++|.+|. +|.++|.+|.+|||+++. +.+ ...++|++.-.+.+|.||| +|.|++..++.
T Consensus 13 ~~~L~V~vi~a~-~L~~~d~~g~~DPyV~v~---------l~~~~~~~~~~kT~v~~~t~nP~wnE---~F~f~i~~~~l 79 (135)
T cd08410 13 AGRLNVDIIRAK-QLLQTDMSQGSDPFVKIQ---------LVHGLKLIKTKKTSCMRGTIDPFYNE---SFSFKVPQEEL 79 (135)
T ss_pred CCeEEEEEEEec-CCCcccCCCCCCeEEEEE---------EEcCCcccceEcCccccCCCCCccce---eEEEeCCHHHh
Confidence 345678999997 489999999999998743 221 1335666444567888888 69999977655
Q ss_pred -cceeEEEEeccCccccc
Q 043301 226 -SKNMSVEFWDLDDVLVN 242 (244)
Q Consensus 226 -~~~~~~~~~~~~~~~~~ 242 (244)
+..|.|+|||||+.++|
T Consensus 80 ~~~~l~~~V~d~d~~~~~ 97 (135)
T cd08410 80 ENVSLVFTVYGHNVKSSN 97 (135)
T ss_pred CCCEEEEEEEeCCCCCCC
Confidence 56899999999998775
No 16
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=98.87 E-value=1.4e-09 Score=87.25 Aligned_cols=90 Identities=10% Similarity=0.114 Sum_probs=64.8
Q ss_pred CCcEEEEEe--ccCCcceeeecccccccccCCC-CcchhhHHHHhhhhccccccccc--CCCCceeEeecCCCCChhhhh
Q 043301 140 QDVELRTIQ--ERNPEDLTFHDVFSSFTEKDRN-QLDDITENIESEIAGIKKTLSET--GDQGSKVTISESYPYSDDTLA 214 (244)
Q Consensus 140 ~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~n-~l~d~~~~~~~~~~~~~~~l~~~--~~~~~~~~i~~~~~~~~~~~~ 214 (244)
|++++...- +.+.+.++|-.|.+ |.++|.+ |..|||+++. |.+. .+.+|+++-.+.+|.|||
T Consensus 3 G~l~~~l~y~~~~~~L~V~Vi~a~~-L~~~~~~~~~~DpyV~v~---------l~~~~~~~~kT~v~~~t~nP~wnE--- 69 (128)
T cd08388 3 GTLFFSLRYNSEKKALLVNIIECRD-LPAMDEQSGTSDPYVKLQ---------LLPEKEHKVKTRVLRKTRNPVYDE--- 69 (128)
T ss_pred eEEEEEEEEECCCCEEEEEEEEeEC-CCCCCCCCCCcCCEEEEE---------EeCCcCceeeccEEcCCCCCceee---
Confidence 555555443 35578899999974 8999976 9999998743 3333 234677443578888888
Q ss_pred hhhh-hcCCCC-ccceeEEEEeccCccccc
Q 043301 215 QFIL-RLQNSL-RSKNMSVEFWDLDDVLVN 242 (244)
Q Consensus 215 ~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~ 242 (244)
+|.| .+.+++ .+..|.|+|||||+.+++
T Consensus 70 ~F~f~~~~~~~~~~~~L~~~V~d~d~~~~d 99 (128)
T cd08388 70 TFTFYGIPYNQLQDLSLHFAVLSFDRYSRD 99 (128)
T ss_pred EEEEcccCHHHhCCCEEEEEEEEcCCCCCC
Confidence 6998 566665 567899999999998775
No 17
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=98.87 E-value=1.2e-09 Score=86.78 Aligned_cols=75 Identities=12% Similarity=0.239 Sum_probs=56.4
Q ss_pred cceeeecccccccccC-CCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEE
Q 043301 153 EDLTFHDVFSSFTEKD-RNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSV 231 (244)
Q Consensus 153 ~~~~v~~~~~~~~~~~-~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (244)
+.+.|-+|. +|.+++ .+|.+|||++++ +..+...+|++.-.+.+|.||| +|.|.+..+ .+.|.|
T Consensus 2 l~v~v~~a~-~L~~~~~~~g~sDpYv~v~---------l~~~~~~kT~v~~kt~~P~WnE---~F~f~v~~~--~~~l~~ 66 (121)
T cd08401 2 LKIKIGEAK-NLPPRSGPNKMRDCYCTVN---------LDQEEVFRTKTVEKSLCPFFGE---DFYFEIPRT--FRHLSF 66 (121)
T ss_pred eEEEEEEcc-CCCCCCCCCCCcCcEEEEE---------ECCccEEEeeEEECCCCCccCC---eEEEEcCCC--CCEEEE
Confidence 347788997 478874 789999998843 3222234677555688899888 699998753 479999
Q ss_pred EEeccCccccc
Q 043301 232 EFWDLDDVLVN 242 (244)
Q Consensus 232 ~~~~~~~~~~~ 242 (244)
+|||||+.+++
T Consensus 67 ~v~d~~~~~~~ 77 (121)
T cd08401 67 YIYDRDVLRRD 77 (121)
T ss_pred EEEECCCCCCC
Confidence 99999998775
No 18
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=98.85 E-value=1.7e-09 Score=87.04 Aligned_cols=90 Identities=14% Similarity=0.147 Sum_probs=65.4
Q ss_pred CCcEEEEEe--ccCCcceeeecccccccccCCCCcchhhHHHHhhhhccccccccc----CCCCceeEeecCCCCChhhh
Q 043301 140 QDVELRTIQ--ERNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSET----GDQGSKVTISESYPYSDDTL 213 (244)
Q Consensus 140 ~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~----~~~~~~~~i~~~~~~~~~~~ 213 (244)
|++.+...- ..+.|.+.|.+|. +|.++|.+|.+|||+++. |.+. .+.+|++.-.+.+|.|||
T Consensus 2 G~l~~~l~y~~~~~~L~V~vi~a~-~L~~~d~~g~~Dpyv~v~---------l~~~~~~~~~~kT~v~k~t~nP~w~e-- 69 (136)
T cd08404 2 GELLLSLCYQPTTNRLTVVVLKAR-HLPKMDVSGLADPYVKVN---------LYYGKKRISKKKTHVKKCTLNPVFNE-- 69 (136)
T ss_pred CeEEEEEEEeCCCCeEEEEEEEee-CCCccccCCCCCeEEEEE---------EEcCCceeeeEcCccccCCCCCccCc--
Confidence 444554433 3557889999997 489999999999998744 2221 234566333578888888
Q ss_pred hhhhhhcCCCC-ccceeEEEEeccCccccc
Q 043301 214 AQFILRLQNSL-RSKNMSVEFWDLDDVLVN 242 (244)
Q Consensus 214 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 242 (244)
+|.|.+.... .+..|.|+|||||+.++|
T Consensus 70 -~F~f~v~~~~~~~~~l~~~v~d~d~~~~~ 98 (136)
T cd08404 70 -SFVFDIPSEELEDISVEFLVLDSDRVTKN 98 (136)
T ss_pred -eEEEECCHHHhCCCEEEEEEEECCCCCCC
Confidence 6999997664 467889999999998876
No 19
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=98.85 E-value=2.2e-09 Score=84.46 Aligned_cols=90 Identities=14% Similarity=0.192 Sum_probs=64.5
Q ss_pred CCcEEEEEec--cCCcceeeecccccccccCCCCcchhhHHHHhhhhcccccccc----cCCCCceeEeecCCCCChhhh
Q 043301 140 QDVELRTIQE--RNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSE----TGDQGSKVTISESYPYSDDTL 213 (244)
Q Consensus 140 ~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~----~~~~~~~~~i~~~~~~~~~~~ 213 (244)
|++++...-. .+.+.++|..|. +|.++|.+|..|||+++. +.+ ...++|++.-.+.+|.|||
T Consensus 3 G~l~~~l~~~~~~~~L~V~vi~a~-~L~~~~~~~~~dpyv~v~---------l~~~~~~~~~~kT~v~~~t~nP~wne-- 70 (125)
T cd04031 3 GRIQIQLWYDKVTSQLIVTVLQAR-DLPPRDDGSLRNPYVKVY---------LLPDRSEKSKRRTKTVKKTLNPEWNQ-- 70 (125)
T ss_pred EEEEEEEEEeCCCCEEEEEEEEec-CCCCcCCCCCCCCEEEEE---------EccCCCccccccccccCCCCCCcccc--
Confidence 3444443332 355779999997 589999999999998844 322 2455677444588888888
Q ss_pred hhhhhhcCCC--CccceeEEEEeccCccccc
Q 043301 214 AQFILRLQNS--LRSKNMSVEFWDLDDVLVN 242 (244)
Q Consensus 214 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 242 (244)
+|.|.+.+. ..++.|.|+|||+|+.+++
T Consensus 71 -~f~f~~~~~~~l~~~~l~~~V~d~~~~~~~ 100 (125)
T cd04031 71 -TFEYSNVRRETLKERTLEVTVWDYDRDGEN 100 (125)
T ss_pred -EEEEcccCHHHhCCCEEEEEEEeCCCCCCC
Confidence 699986553 3578999999999987654
No 20
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=98.83 E-value=2.3e-09 Score=85.56 Aligned_cols=75 Identities=11% Similarity=0.018 Sum_probs=54.9
Q ss_pred cceeeecccccccccCCCCcchhhHHHHhhhhccccccc----ccCC--CCceeEee-cCCCCChhhhhhhhhhcCCC--
Q 043301 153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLS----ETGD--QGSKVTIS-ESYPYSDDTLAQFILRLQNS-- 223 (244)
Q Consensus 153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~----~~~~--~~~~~~i~-~~~~~~~~~~~~~~~~~~~~-- 223 (244)
|++.|-+|.+ |.++| .|.+|||+++. |. ++.+ ++|+ ++. +.||.||| +|.|.+.+.
T Consensus 2 L~V~Vi~A~~-L~~~d-~g~~DPYVkV~---------l~g~~~~~k~~k~kTk-v~~~tlnPvwNE---~f~F~v~~~~~ 66 (120)
T cd08395 2 VTVKVVAAND-LKWQT-TGMFRPFVEVN---------LIGPHLSDKKRKFATK-SKNNNWSPKYNE---TFQFILGNEDD 66 (120)
T ss_pred EEEEEEECcC-CCccc-CCCCCCEEEEE---------EecCCCcccccEeeeE-EecCCCCCccCc---EEEEEeeCcCC
Confidence 6789999984 78888 59999998843 32 2333 3455 334 45899988 699999864
Q ss_pred CccceeEEEEeccCccccc
Q 043301 224 LRSKNMSVEFWDLDDVLVN 242 (244)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~ 242 (244)
..+.-|.|+|||||+.+.|
T Consensus 67 ~~~~~L~~~V~D~d~~~~d 85 (120)
T cd08395 67 PESYELHICVKDYCFARDD 85 (120)
T ss_pred CceeEEEEEEEEecccCCC
Confidence 4556799999999987655
No 21
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=98.82 E-value=2.1e-09 Score=84.83 Aligned_cols=90 Identities=13% Similarity=0.142 Sum_probs=65.7
Q ss_pred CCcEEEEEe--ccCCcceeeecccccccccCCCCcchhhHHHHhhhhccccccccc--CCCCceeEeecCCCCChhhhhh
Q 043301 140 QDVELRTIQ--ERNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSET--GDQGSKVTISESYPYSDDTLAQ 215 (244)
Q Consensus 140 ~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~--~~~~~~~~i~~~~~~~~~~~~~ 215 (244)
|++++...- ..+.+.++|-.|.+ |.++|.+|..|||+++. +.+. ...+|+..-.+.+|.||| +
T Consensus 3 G~l~~~l~y~~~~~~L~V~v~~a~~-L~~~d~~~~~dpyv~v~---------l~~~~~~~~kT~v~~~t~nP~wne---~ 69 (124)
T cd08385 3 GKLQFSLDYDFQSNQLTVGIIQAAD-LPAMDMGGTSDPYVKVY---------LLPDKKKKFETKVHRKTLNPVFNE---T 69 (124)
T ss_pred cEEEEEEEEeCCCCEEEEEEEEeeC-CCCccCCCCCCCEEEEE---------EEcCCCCceecccCcCCCCCceee---e
Confidence 555555544 35678899999974 89999999999998743 3332 234666344477888888 6
Q ss_pred hhhhcCCCC-ccceeEEEEeccCccccc
Q 043301 216 FILRLQNSL-RSKNMSVEFWDLDDVLVN 242 (244)
Q Consensus 216 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 242 (244)
|.|.+...+ .++.|.|+|||||+.+++
T Consensus 70 f~f~i~~~~l~~~~l~~~V~d~d~~~~~ 97 (124)
T cd08385 70 FTFKVPYSELGNKTLVFSVYDFDRFSKH 97 (124)
T ss_pred EEEeCCHHHhCCCEEEEEEEeCCCCCCC
Confidence 999987654 457899999999988764
No 22
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=98.82 E-value=2.9e-09 Score=85.51 Aligned_cols=96 Identities=11% Similarity=0.111 Sum_probs=67.6
Q ss_pred CCcEEEEEec--cCCcceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhh
Q 043301 140 QDVELRTIQE--RNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFI 217 (244)
Q Consensus 140 ~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~ 217 (244)
|.+.+.+... .+.+.+.|-.|. .|.+++.+|..|||+++.-- .-. .......++|+.+-.+.+|.||| +|.
T Consensus 3 G~l~~~l~y~~~~~~L~V~Vi~A~-~L~~~~~~g~~dPyv~v~l~--~~~-~~~~~~~~kT~v~~~t~nP~wnE---~f~ 75 (133)
T cd04009 3 GVLTVKAYYRASEQSLRVEILNAR-NLLPLDSNGSSDPFVKVELL--PRH-LFPDVPTPKTQVKKKTLFPLFDE---SFE 75 (133)
T ss_pred eEEEEEEEEcCCCCEEEEEEEEee-CCCCcCCCCCCCCEEEEEEE--CCC-cCccccccccccCcCCCCCccCC---EEE
Confidence 5556665554 356889999997 48999999999999874410 000 00113467777555577888887 699
Q ss_pred hhcCCC---CccceeEEEEeccCccccc
Q 043301 218 LRLQNS---LRSKNMSVEFWDLDDVLVN 242 (244)
Q Consensus 218 ~~~~~~---~~~~~~~~~~~~~~~~~~~ 242 (244)
|.+... +.+..|.|+|||+|+.+++
T Consensus 76 f~i~~~~~~~~~~~l~~~V~d~d~~~~d 103 (133)
T cd04009 76 FNVPPEQCSVEGALLLFTVKDYDLLGSN 103 (133)
T ss_pred EEechhhcccCCCEEEEEEEecCCCCCC
Confidence 998764 4678999999999998754
No 23
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=98.81 E-value=2.1e-09 Score=85.28 Aligned_cols=75 Identities=11% Similarity=0.102 Sum_probs=57.7
Q ss_pred ceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCC----Ccccee
Q 043301 154 DLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNS----LRSKNM 229 (244)
Q Consensus 154 ~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 229 (244)
.++|-+|.+ |.++|.+|.+|||++++ |.. .+.+|++.-.+++|.||| +|.|.+... ..++.|
T Consensus 2 ~V~V~~A~~-L~~~d~~g~~dpYv~v~---------l~~-~~~kT~v~~~t~nP~Wne---~f~F~v~~~~~~~~~~~~l 67 (126)
T cd08682 2 QVTVLQARG-LLCKGKSGTNDAYVIIQ---------LGK-EKYSTSVKEKTTSPVWKE---ECSFELPGLLSGNGNRATL 67 (126)
T ss_pred EEEEEECcC-CcCCCCCcCCCceEEEE---------ECC-eeeeeeeecCCCCCEeCc---eEEEEecCcccCCCcCCEE
Confidence 478999985 89999999999998854 332 345677444578888888 699988763 467889
Q ss_pred EEEEeccCccccc
Q 043301 230 SVEFWDLDDVLVN 242 (244)
Q Consensus 230 ~~~~~~~~~~~~~ 242 (244)
.|+|||||+.+++
T Consensus 68 ~~~v~d~~~~~~d 80 (126)
T cd08682 68 QLTVMHRNLLGLD 80 (126)
T ss_pred EEEEEEccccCCC
Confidence 9999999987653
No 24
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=98.80 E-value=2.1e-09 Score=83.60 Aligned_cols=76 Identities=12% Similarity=0.162 Sum_probs=59.1
Q ss_pred cceeeecccccccccC-CCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCC-hhhhhhhhhhcCCCC-cccee
Q 043301 153 EDLTFHDVFSSFTEKD-RNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYS-DDTLAQFILRLQNSL-RSKNM 229 (244)
Q Consensus 153 ~~~~v~~~~~~~~~~~-~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~-~~~~~ 229 (244)
|.++|.+|.+ |-+|| .+|.+|||+++. +.. ...+|++.-.+.+|.| || +|.|.+..++ .++.|
T Consensus 1 l~V~v~~a~~-L~~~d~~~~~~Dpyv~v~---------~~~-~~~kT~v~~~~~nP~W~ne---~f~f~i~~~~l~~~~l 66 (110)
T cd08688 1 LKVRVVAARD-LPVMDRSSDLTDAFVEVK---------FGS-TTYKTDVVKKSLNPVWNSE---WFRFEVDDEELQDEPL 66 (110)
T ss_pred CEEEEEEEEC-CCccccCCCCCCceEEEE---------ECC-eeEecceecCCCCCcccCc---EEEEEcChHHcCCCeE
Confidence 4588999985 88899 589999998754 332 4567774445788888 77 6999988765 46899
Q ss_pred EEEEeccCccccc
Q 043301 230 SVEFWDLDDVLVN 242 (244)
Q Consensus 230 ~~~~~~~~~~~~~ 242 (244)
.|+|||||+.++|
T Consensus 67 ~i~V~d~d~~~~~ 79 (110)
T cd08688 67 QIRVMDHDTYSAN 79 (110)
T ss_pred EEEEEeCCCCCCC
Confidence 9999999998765
No 25
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=98.80 E-value=4e-10 Score=108.85 Aligned_cols=99 Identities=25% Similarity=0.513 Sum_probs=78.1
Q ss_pred CCCCCCEeeeeccCCCcccccccccccCCCCC---cEEeCCCCCccccccccCCCc------------------------
Q 043301 14 SHMHYLIFNENEVGHDDVVIICDICETSLQGP---AYGCGTCEFSIHKSCAELPLK------------------------ 66 (244)
Q Consensus 14 sHpH~L~L~~~~~~~~~~~~~C~~C~~~i~g~---~Y~C~~C~F~lH~~Ca~~p~~------------------------ 66 (244)
.|||.|.. .. +..+++||.||+.++|. +.+|..|+..+|++||...+.
T Consensus 143 i~PH~l~v-hS----Y~~PtFCD~CGEmL~GLvrQGlKC~gCglNyHKRCa~kipNNCsG~r~rr~sa~~l~~~~s~~l~ 217 (888)
T KOG4236|consen 143 IRPHTLFV-HS----YKAPTFCDFCGEMLFGLVRQGLKCEGCGLNYHKRCAFKIPNNCSGVRKRRLSAVSLQPSRSNRLN 217 (888)
T ss_pred eecceeee-ec----ccCchHHHHHHHHHHHHHHccccccCCCCcHhhhhhhcCCCCCCcccccCCCCCCCCCCCccccc
Confidence 45588876 23 46789999999999984 899999999999999975210
Q ss_pred ----------------------------CCC----C-----------CCCCcceEeec-CcccccccccCCCCe---eEE
Q 043301 67 ----------------------------IDH----P-----------FHCHPLTLSKT-NHHRCDACLDECSGM---AYR 99 (244)
Q Consensus 67 ----------------------------i~h----p-----------~H~H~L~L~~~-~~~~Cd~Cg~~~~g~---~Y~ 99 (244)
+.. | .-+|.|..++| .++.|.+|.+.+.|+ +++
T Consensus 218 ~s~~~p~~p~~~~~pst~~~~~~~p~~~~~S~sgrpi~~ek~~~~rvkvPHTf~vHSY~rpTVCq~CkkLLkGL~rQGlq 297 (888)
T KOG4236|consen 218 LSPSSPLEPLLPARPSTELGGPREPSSAILSWSGRPIWMEKMLMSRVKVPHTFIVHSYTRPTVCQYCKKLLKGLFRQGLQ 297 (888)
T ss_pred cCCCCCCCccccCCCcccccCCCCCCcccccccCCCchhhhhhhhcccCCeeEEEeeccCchHHHHHHHHHHHHHhcCcc
Confidence 000 1 12577777777 889999999998776 599
Q ss_pred cCCccceeccccccCcCc
Q 043301 100 CHECCYNLHYHCTALKPS 117 (244)
Q Consensus 100 C~~Cd~~lH~~Ca~~p~~ 117 (244)
|..|.|+.|++|+...+.
T Consensus 298 CkDCk~NcHkrCa~~v~~ 315 (888)
T KOG4236|consen 298 CKDCKFNCHKRCAMKVPN 315 (888)
T ss_pred cccCCcchhhhhhhhccc
Confidence 999999999999988765
No 26
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=98.78 E-value=5.1e-09 Score=82.68 Aligned_cols=90 Identities=12% Similarity=0.200 Sum_probs=65.6
Q ss_pred CCcEEEEEec--cCCcceeeecccccccccCCCCcchhhHHHHhhhhcccccccc--cCCCCceeEeecCCCCChhhhhh
Q 043301 140 QDVELRTIQE--RNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSE--TGDQGSKVTISESYPYSDDTLAQ 215 (244)
Q Consensus 140 ~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~--~~~~~~~~~i~~~~~~~~~~~~~ 215 (244)
|++++..... .+.+.+.|-+|. +|.++|.+|.+|||+++. +.+ ...++|++.-.+.+|.||| +
T Consensus 3 G~l~~sl~y~~~~~~L~V~v~~a~-~L~~~d~~g~~dpyv~v~---------l~~~~~~~~kT~v~~~t~~P~wne---~ 69 (124)
T cd08387 3 GELHFSLEYDKDMGILNVKLIQAR-NLQPRDFSGTADPYCKVR---------LLPDRSNTKQSKIHKKTLNPEFDE---S 69 (124)
T ss_pred CEEEEEEEECCCCCEEEEEEEEee-CCCCCCCCCCCCCeEEEE---------EecCCCCcEeCceEcCCCCCCccc---E
Confidence 4444444332 345779999997 489999999999998744 322 2345677444588888888 6
Q ss_pred hhhhcCCCC-ccceeEEEEeccCccccc
Q 043301 216 FILRLQNSL-RSKNMSVEFWDLDDVLVN 242 (244)
Q Consensus 216 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 242 (244)
|.|.+..++ .++.|.|+|||+|+.++|
T Consensus 70 f~f~v~~~~l~~~~l~i~V~d~~~~~~~ 97 (124)
T cd08387 70 FVFEVPPQELPKRTLEVLLYDFDQFSRD 97 (124)
T ss_pred EEEeCCHHHhCCCEEEEEEEECCCCCCC
Confidence 999988765 457899999999988766
No 27
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=98.78 E-value=2.8e-09 Score=83.93 Aligned_cols=75 Identities=17% Similarity=0.279 Sum_probs=56.4
Q ss_pred cceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEEE
Q 043301 153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVE 232 (244)
Q Consensus 153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (244)
|.+.|.+|. +|.++|.+|.+|||++++ +......+|+++..+.+|.||| .|.|.+.. .+..|.||
T Consensus 2 L~v~v~~a~-~L~~~d~~g~~Dpyv~v~---------~~~~~~~kT~~~~~t~nP~Wne---~f~f~v~~--~~~~l~~~ 66 (121)
T cd04042 2 LDIHLKEGR-NLAARDRGGTSDPYVKFK---------YGGKTVYKSKTIYKNLNPVWDE---KFTLPIED--VTQPLYIK 66 (121)
T ss_pred eEEEEEEee-CCCCcCCCCCCCCeEEEE---------ECCEEEEEeeeccCCCCCccce---eEEEEecC--CCCeEEEE
Confidence 458899997 589999999999998754 2222334666455577888887 69988754 35789999
Q ss_pred EeccCccccc
Q 043301 233 FWDLDDVLVN 242 (244)
Q Consensus 233 ~~~~~~~~~~ 242 (244)
|||||+.+++
T Consensus 67 v~D~d~~~~~ 76 (121)
T cd04042 67 VFDYDRGLTD 76 (121)
T ss_pred EEeCCCCCCC
Confidence 9999998654
No 28
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=98.77 E-value=3.3e-09 Score=82.60 Aligned_cols=78 Identities=12% Similarity=0.198 Sum_probs=58.0
Q ss_pred CcceeeecccccccccCCC-CcchhhHHHHhhhhcccccccc--cCCCCceeEeecCCCCChhhhhhhhhhcCCCC--cc
Q 043301 152 PEDLTFHDVFSSFTEKDRN-QLDDITENIESEIAGIKKTLSE--TGDQGSKVTISESYPYSDDTLAQFILRLQNSL--RS 226 (244)
Q Consensus 152 ~~~~~v~~~~~~~~~~~~n-~l~d~~~~~~~~~~~~~~~l~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~ 226 (244)
.|.++|-.|. +|.++|.+ |.+|||+++. +.+ ....+|+.+-.+.+|.||| .|.|.+.+.+ .+
T Consensus 2 ~L~V~v~~a~-~L~~~d~~~~~~Dpyv~v~---------~~~~~~~~~kT~v~~~t~nP~Wne---~f~f~~~~~~~~~~ 68 (111)
T cd04041 2 VLVVTIHRAT-DLPKADFGTGSSDPYVTAS---------FAKFGKPLYSTRIIRKDLNPVWEE---TWFVLVTPDEVKAG 68 (111)
T ss_pred EEEEEEEEee-CCCcccCCCCCCCccEEEE---------EccCCCccEeeeeECCCCCCccce---eEEEEeCchhccCC
Confidence 3568899997 48999998 9999998854 221 2235677444577888888 5888777653 56
Q ss_pred ceeEEEEeccCccccc
Q 043301 227 KNMSVEFWDLDDVLVN 242 (244)
Q Consensus 227 ~~~~~~~~~~~~~~~~ 242 (244)
+.|.|+|||+|+.+.|
T Consensus 69 ~~l~~~V~d~d~~~~d 84 (111)
T cd04041 69 ERLSCRLWDSDRFTAD 84 (111)
T ss_pred CEEEEEEEeCCCCCCC
Confidence 7899999999998764
No 29
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=98.77 E-value=4.1e-09 Score=82.64 Aligned_cols=80 Identities=10% Similarity=0.213 Sum_probs=61.0
Q ss_pred cCCcceeeecccccccccC-CCCcchhhHHHHhhhhccccccccc----CCCCceeEeecCCCCChhhhhhhhhhcCCCC
Q 043301 150 RNPEDLTFHDVFSSFTEKD-RNQLDDITENIESEIAGIKKTLSET----GDQGSKVTISESYPYSDDTLAQFILRLQNSL 224 (244)
Q Consensus 150 ~~~~~~~v~~~~~~~~~~~-~n~l~d~~~~~~~~~~~~~~~l~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 224 (244)
.+.+.++|-+|. +|.+++ ..|..|||+++. +.+. .+++|++.-.+.+|.||| +|.|.+..++
T Consensus 13 ~~~L~V~v~~a~-~L~~~~~~~~~~dpyv~v~---------l~~~~~~~~~~kT~v~~~t~~P~wne---~f~f~i~~~~ 79 (123)
T cd08521 13 TGSLEVHIKECR-NLAYADEKKKRSNPYVKVY---------LLPDKSKQSKRKTSVKKNTTNPVFNE---TLKYHISKSQ 79 (123)
T ss_pred CCEEEEEEEEec-CCCCcCCCCCCCCcEEEEE---------EecCCCcCceeeccccCCCCCCcccc---eEEEeCCHHH
Confidence 456779999997 489999 889999998843 2222 345677444578888888 6999988765
Q ss_pred c-cceeEEEEeccCccccc
Q 043301 225 R-SKNMSVEFWDLDDVLVN 242 (244)
Q Consensus 225 ~-~~~~~~~~~~~~~~~~~ 242 (244)
. .+.|.|+|||+|+.++|
T Consensus 80 l~~~~l~i~v~d~~~~~~~ 98 (123)
T cd08521 80 LETRTLQLSVWHHDRFGRN 98 (123)
T ss_pred hCCCEEEEEEEeCCCCcCC
Confidence 3 67899999999988775
No 30
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=98.76 E-value=4.5e-09 Score=85.18 Aligned_cols=79 Identities=10% Similarity=0.105 Sum_probs=62.6
Q ss_pred cCCcceeeecccccccccCCCCcchhhHHHHhhhhccccccccc----CCCCceeEeecCCCCChhhhhhhhhhcCCCCc
Q 043301 150 RNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSET----GDQGSKVTISESYPYSDDTLAQFILRLQNSLR 225 (244)
Q Consensus 150 ~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 225 (244)
.+.|.++|-+|.+ |.++| .+..|||++ ..|.+. .+++|++.-.+.+|.||| +|.|++.+++.
T Consensus 14 ~~~L~V~V~~a~n-L~~~~-~~~~d~yVk---------v~l~~~~~~~~~~kT~v~~~~~nP~fnE---~F~f~i~~~~l 79 (137)
T cd08409 14 LNRLTVVVLRARG-LRQLD-HAHTSVYVK---------VSLMIHNKVVKTKKTEVVDGAASPSFNE---SFSFKVTSRQL 79 (137)
T ss_pred CCeEEEEEEEecC-CCccc-CCCCCeEEE---------EEEEECCEEeeeeecccEeCCCCCcccc---eEEEECCHHHh
Confidence 4567899999985 89999 888999988 444443 355777555688999998 69999988766
Q ss_pred c-ceeEEEEeccCccccc
Q 043301 226 S-KNMSVEFWDLDDVLVN 242 (244)
Q Consensus 226 ~-~~~~~~~~~~~~~~~~ 242 (244)
+ ++|.|+|||.|+.++|
T Consensus 80 ~~~~L~~~V~~~~~~~~~ 97 (137)
T cd08409 80 DTASLSLSVMQSGGVRKS 97 (137)
T ss_pred CccEEEEEEEeCCCCCCc
Confidence 5 7999999999987765
No 31
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=98.76 E-value=4e-09 Score=82.32 Aligned_cols=76 Identities=8% Similarity=0.023 Sum_probs=57.2
Q ss_pred cceeeecccccccccCC---CC-cchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccce
Q 043301 153 EDLTFHDVFSSFTEKDR---NQ-LDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKN 228 (244)
Q Consensus 153 ~~~~v~~~~~~~~~~~~---n~-l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (244)
|.++|.+|.+ |.++|. +| -.|||+++. +. ...++|++.-.+.+|.||| .|.|.+.+.+.+..
T Consensus 3 l~v~v~~A~~-L~~~~~~~~~~~~~DPYv~v~---------~~-~~~~kT~v~~~t~nPvWne---~f~f~v~~~~~~~~ 68 (108)
T cd04039 3 VFMEIKSITD-LPPLKNMTRTGFDMDPFVIIS---------FG-RRVFRTSWRRHTLNPVFNE---RLAFEVYPHEKNFD 68 (108)
T ss_pred EEEEEEeeeC-CCCccccCCCCCccCceEEEE---------EC-CEeEeeeeecCCCCCcccc---eEEEEEeCccCCCE
Confidence 5588999974 788872 22 379998854 22 2345677444477888887 69999988888889
Q ss_pred eEEEEeccCccccc
Q 043301 229 MSVEFWDLDDVLVN 242 (244)
Q Consensus 229 ~~~~~~~~~~~~~~ 242 (244)
|.|+|||||+.++|
T Consensus 69 L~~~V~D~d~~~~d 82 (108)
T cd04039 69 IQFKVLDKDKFSFN 82 (108)
T ss_pred EEEEEEECCCCCCC
Confidence 99999999998775
No 32
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=98.75 E-value=5e-09 Score=83.69 Aligned_cols=80 Identities=18% Similarity=0.223 Sum_probs=60.9
Q ss_pred cCCcceeeecccccccccCCCCcchhhHHHHhhhhcccccccc----cCCCCceeEeecCCCCChhhhhhhhhhcCCCCc
Q 043301 150 RNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSE----TGDQGSKVTISESYPYSDDTLAQFILRLQNSLR 225 (244)
Q Consensus 150 ~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 225 (244)
.+.|.++|-.|. +|.++|.+|.+|||+++. +.+ ....+|++.-.+.+|.||| +|.|.+..++.
T Consensus 12 ~~~L~V~Vi~a~-~L~~~d~~~~~DpyV~v~---------l~~~~~~~~~~kT~v~~~t~nP~wne---~f~f~~~~~~l 78 (133)
T cd08384 12 RRGLIVGIIRCV-NLAAMDANGYSDPFVKLY---------LKPDAGKKSKHKTQVKKKTLNPEFNE---EFFYDIKHSDL 78 (133)
T ss_pred CCEEEEEEEEEc-CCCCcCCCCCCCcEEEEE---------EEcCCCccCCceeeeEeccCCCCccc---EEEEECCHHHh
Confidence 445668899997 489999999999998744 322 2345677444588888888 69999887654
Q ss_pred -cceeEEEEeccCccccc
Q 043301 226 -SKNMSVEFWDLDDVLVN 242 (244)
Q Consensus 226 -~~~~~~~~~~~~~~~~~ 242 (244)
++.|.|+|||+|+.+++
T Consensus 79 ~~~~l~~~V~d~d~~~~~ 96 (133)
T cd08384 79 AKKTLEITVWDKDIGKSN 96 (133)
T ss_pred CCCEEEEEEEeCCCCCCc
Confidence 58999999999987654
No 33
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=98.74 E-value=6.3e-09 Score=86.91 Aligned_cols=79 Identities=14% Similarity=0.154 Sum_probs=60.2
Q ss_pred CCcceeeecccccccccCCCCcchhhHHHHhhhhcccccccc----cCCCCceeEeecCCCCChhhhhhhhhhcC-CC-C
Q 043301 151 NPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSE----TGDQGSKVTISESYPYSDDTLAQFILRLQ-NS-L 224 (244)
Q Consensus 151 ~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~-~ 224 (244)
+.|.++|.+|.+ |-++|.+|.+|||+++. |.+ ..+++|+++-.+.+|.||| +|.|.+. ++ .
T Consensus 27 g~L~V~Vi~A~n-L~~~d~~g~~DPYVkv~---------l~~~~~~~~~~kT~vi~~t~nP~WnE---~f~f~~~~~~~l 93 (162)
T cd04020 27 GELHVWVKEAKN-LPALKSGGTSDSFVKCY---------LLPDKSKKSKQKTPVVKKSVNPVWNH---TFVYDGVSPEDL 93 (162)
T ss_pred ceEEEEEEeeeC-CCCCCCCCCCCCEEEEE---------EEcCCCCCcceeCCccCCCCCCCCCC---EEEEecCCHHHh
Confidence 457799999984 89999999999998843 322 2456787555578899998 6999853 33 3
Q ss_pred ccceeEEEEeccCccccc
Q 043301 225 RSKNMSVEFWDLDDVLVN 242 (244)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~ 242 (244)
.++.|.|+|||||+.+++
T Consensus 94 ~~~~L~i~V~d~d~~~~d 111 (162)
T cd04020 94 SQACLELTVWDHDKLSSN 111 (162)
T ss_pred CCCEEEEEEEeCCCCCCC
Confidence 568899999999998765
No 34
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.71 E-value=6.5e-09 Score=86.18 Aligned_cols=76 Identities=12% Similarity=0.085 Sum_probs=56.6
Q ss_pred cceeeecccccccccCCCC--------------cchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhh
Q 043301 153 EDLTFHDVFSSFTEKDRNQ--------------LDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFIL 218 (244)
Q Consensus 153 ~~~~v~~~~~~~~~~~~n~--------------l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 218 (244)
+.++|-+|. .|.+||..+ ++|||++++ +... +++|+++-.+.+|.||| +|.|
T Consensus 2 ~~V~V~~A~-dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~---------~~g~-~~kT~v~~~t~nPvWNE---~f~f 67 (151)
T cd04018 2 FIFKIYRAE-DLPQMDSGIMANVKKAFLGEKKELVDPYVEVS---------FAGQ-KVKTSVKKNSYNPEWNE---QIVF 67 (151)
T ss_pred eEEEEEEeC-CCCccChhhhccceeccccCCCCCcCcEEEEE---------ECCE-eeecceEcCCCCCCcce---EEEE
Confidence 457788887 478888654 789998744 3332 34677555577888888 6999
Q ss_pred hcCCCCccceeEEEEeccCccccc
Q 043301 219 RLQNSLRSKNMSVEFWDLDDVLVN 242 (244)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~ 242 (244)
.+.-.+.+.+|.|+|||||..++|
T Consensus 68 ~v~~p~~~~~l~~~v~D~d~~~~d 91 (151)
T cd04018 68 PEMFPPLCERIKIQIRDWDRVGND 91 (151)
T ss_pred EeeCCCcCCEEEEEEEECCCCCCC
Confidence 876556678999999999998764
No 35
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=98.69 E-value=1.5e-08 Score=80.63 Aligned_cols=93 Identities=17% Similarity=0.246 Sum_probs=71.3
Q ss_pred CCcEEEEEeccCCcceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhh
Q 043301 140 QDVELRTIQERNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILR 219 (244)
Q Consensus 140 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 219 (244)
|.+.+.+..++..+.+++-+|. +|.++|.+|..|||+.++- .........++|+.+-.+.+|.||| +|.|.
T Consensus 2 g~~~~~~~~~~~~l~v~i~~a~-nL~~~~~~~~~dpyv~v~~-----~~~~~~~~~~rT~v~~~~~~P~wne---~f~~~ 72 (131)
T cd04026 2 GRIYLKISVKDNKLTVEVREAK-NLIPMDPNGLSDPYVKLKL-----IPDPKNETKQKTKTIKKTLNPVWNE---TFTFD 72 (131)
T ss_pred cEEEEEEEECCCEEEEEEEEee-CCCCcCCCCCCCCcEEEEE-----EcCCCCCceecceeecCCCCCCccc---eEEEe
Confidence 7788888888999999999997 4888999999999987441 0000012346777544477788887 69999
Q ss_pred cCCCCccceeEEEEeccCcccc
Q 043301 220 LQNSLRSKNMSVEFWDLDDVLV 241 (244)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~ 241 (244)
+.+++.++.|.|+|||+|....
T Consensus 73 ~~~~~~~~~l~v~v~d~~~~~~ 94 (131)
T cd04026 73 LKPADKDRRLSIEVWDWDRTTR 94 (131)
T ss_pred CCchhcCCEEEEEEEECCCCCC
Confidence 9988888999999999987643
No 36
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=98.67 E-value=1.5e-08 Score=81.39 Aligned_cols=80 Identities=14% Similarity=0.123 Sum_probs=60.2
Q ss_pred cCCcceeeecccccccccCCCCcchhhHHHHhhhhcccccccc----cCCCCceeEeecCCCCChhhhhhhhhhcCCCCc
Q 043301 150 RNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSE----TGDQGSKVTISESYPYSDDTLAQFILRLQNSLR 225 (244)
Q Consensus 150 ~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 225 (244)
.+.|.++|-+|. +|.++|.+|.+|||+++. |.+ ....+|+++-.+.+|.||| +|.|.+..++.
T Consensus 14 ~~~L~v~vi~a~-~L~~~~~~g~~dpyV~v~---------l~~~~~~~~~~kT~v~~~t~~P~wne---~F~f~i~~~~~ 80 (136)
T cd08405 14 ANRITVNIIKAR-NLKAMDINGTSDPYVKVW---------LMYKDKRVEKKKTVIKKRTLNPVFNE---SFIFNIPLERL 80 (136)
T ss_pred CCeEEEEEEEee-CCCccccCCCCCceEEEE---------EEeCCCccccccCcceeCCCCCcccc---eEEEeCCHHHh
Confidence 456789999997 489999999999998743 322 1345677444577888887 69999876654
Q ss_pred -cceeEEEEeccCccccc
Q 043301 226 -SKNMSVEFWDLDDVLVN 242 (244)
Q Consensus 226 -~~~~~~~~~~~~~~~~~ 242 (244)
+..|.|+|||+|+.++|
T Consensus 81 ~~~~l~~~v~d~~~~~~~ 98 (136)
T cd08405 81 RETTLIITVMDKDRLSRN 98 (136)
T ss_pred CCCEEEEEEEECCCCCCC
Confidence 67899999999987764
No 37
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=98.67 E-value=1.4e-08 Score=81.51 Aligned_cols=80 Identities=15% Similarity=0.199 Sum_probs=59.8
Q ss_pred cCCcceeeecccccccccCCCCcchhhHHHHhhhhccccccccc----CCCCceeEeecCCCCChhhhhhhhhhcCCCCc
Q 043301 150 RNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSET----GDQGSKVTISESYPYSDDTLAQFILRLQNSLR 225 (244)
Q Consensus 150 ~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 225 (244)
.+.+.+.|-+|.+ |.++|.+|.+|||+++. +.+. ..++|+..-.+.+|.||| +|.|.+..+..
T Consensus 14 ~~~l~V~Vi~a~~-L~~~d~~g~~dpyv~v~---------l~~~~~~~~~~kT~v~~~t~nP~wne---~f~f~i~~~~l 80 (136)
T cd08402 14 AGKLTVVILEAKN-LKKMDVGGLSDPYVKIH---------LMQNGKRLKKKKTTIKKRTLNPYYNE---SFSFEVPFEQI 80 (136)
T ss_pred CCeEEEEEEEeeC-CCcccCCCCCCCeEEEE---------EEECCcccceeeccceeCCCCCcccc---eEEEECCHHHh
Confidence 3456788999974 88999999999998744 2221 244566444577888888 69999876643
Q ss_pred -cceeEEEEeccCccccc
Q 043301 226 -SKNMSVEFWDLDDVLVN 242 (244)
Q Consensus 226 -~~~~~~~~~~~~~~~~~ 242 (244)
+..|.|+|||+|+.++|
T Consensus 81 ~~~~l~~~v~d~~~~~~~ 98 (136)
T cd08402 81 QKVHLIVTVLDYDRIGKN 98 (136)
T ss_pred CCCEEEEEEEeCCCCCCC
Confidence 45799999999998765
No 38
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=98.67 E-value=1.5e-08 Score=81.14 Aligned_cols=79 Identities=14% Similarity=0.129 Sum_probs=58.5
Q ss_pred CCcceeeecccccccccCCCCcchhhHHHHhhhhccccccccc----CCCCceeEeecCCCCChhhhhhhhhhcCCCCc-
Q 043301 151 NPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSET----GDQGSKVTISESYPYSDDTLAQFILRLQNSLR- 225 (244)
Q Consensus 151 ~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~- 225 (244)
+.|.++|.+|. +|.++|.+|.+|||+++. |.+. ..++|++.-.+.+|.||| +|.|.+.++..
T Consensus 14 ~~L~V~v~~A~-~L~~~d~~g~~dpyvkv~---------l~~~~~~~~~~kT~v~~~t~nP~wne---~f~f~i~~~~~~ 80 (134)
T cd08403 14 GRLTLTIIKAR-NLKAMDITGFSDPYVKVS---------LMCEGRRLKKKKTSVKKNTLNPTYNE---ALVFDVPPENVD 80 (134)
T ss_pred CEEEEEEEEee-CCCccccCCCCCceEEEE---------EEeCCcccceecCCcccCCCCCcccc---eEEEECCHHHhC
Confidence 44668999997 589999999999998743 3222 244666333467888888 69999876644
Q ss_pred cceeEEEEeccCccccc
Q 043301 226 SKNMSVEFWDLDDVLVN 242 (244)
Q Consensus 226 ~~~~~~~~~~~~~~~~~ 242 (244)
+..|.|+|||+|+.++|
T Consensus 81 ~~~l~~~v~d~~~~~~~ 97 (134)
T cd08403 81 NVSLIIAVVDYDRVGHN 97 (134)
T ss_pred CCEEEEEEEECCCCCCC
Confidence 45799999999998765
No 39
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=98.66 E-value=8.9e-09 Score=80.13 Aligned_cols=75 Identities=24% Similarity=0.267 Sum_probs=57.2
Q ss_pred cceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEEE
Q 043301 153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVE 232 (244)
Q Consensus 153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (244)
+++.|.+|. +|-++|.+|.+|||+++. +. ..+.+|+..-.+.+|.||| +|.|.+.+. .++.|.|+
T Consensus 2 ~~V~v~~a~-~L~~~~~~~~~dPyv~v~---------~~-~~~~kT~v~~~t~nP~Wne---~f~f~~~~~-~~~~l~v~ 66 (116)
T cd08376 2 VTIVLVEGK-NLPPMDDNGLSDPYVKFR---------LG-NEKYKSKVCSKTLNPQWLE---QFDLHLFDD-QSQILEIE 66 (116)
T ss_pred EEEEEEEEE-CCCCCCCCCCCCcEEEEE---------EC-CEeEecccccCCCCCceeE---EEEEEecCC-CCCEEEEE
Confidence 457889997 489999999999998755 22 1245666444578888888 699988654 57899999
Q ss_pred EeccCccccc
Q 043301 233 FWDLDDVLVN 242 (244)
Q Consensus 233 ~~~~~~~~~~ 242 (244)
|||+|+.+++
T Consensus 67 v~d~~~~~~~ 76 (116)
T cd08376 67 VWDKDTGKKD 76 (116)
T ss_pred EEECCCCCCC
Confidence 9999987654
No 40
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=98.66 E-value=1.3e-08 Score=81.97 Aligned_cols=74 Identities=14% Similarity=0.120 Sum_probs=54.5
Q ss_pred ceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEEEE
Q 043301 154 DLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVEF 233 (244)
Q Consensus 154 ~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (244)
.++|..|.+ | +++..|.+|||+++. +.. ...+|+++-.+.+|.||| +|.|.+...+....|.|||
T Consensus 31 ~V~V~~A~~-L-~~d~~g~~DPYVkV~---------~~~-~~~kT~vi~~t~nPvWNE---~F~f~~~~~~~~~~L~v~V 95 (127)
T cd04032 31 TVTVLRATG-L-WGDYFTSTDGYVKVF---------FGG-QEKRTEVIWNNNNPRWNA---TFDFGSVELSPGGKLRFEV 95 (127)
T ss_pred EEEEEECCC-C-CcCcCCCCCeEEEEE---------ECC-ccccCceecCCCCCcCCC---EEEEecccCCCCCEEEEEE
Confidence 388888875 4 467778899998854 222 266777444467888887 6988765556788999999
Q ss_pred eccCccccc
Q 043301 234 WDLDDVLVN 242 (244)
Q Consensus 234 ~~~~~~~~~ 242 (244)
||||..+++
T Consensus 96 ~D~d~~s~d 104 (127)
T cd04032 96 WDRDNGWDD 104 (127)
T ss_pred EeCCCCCCC
Confidence 999998765
No 41
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=98.65 E-value=1.6e-08 Score=79.99 Aligned_cols=75 Identities=11% Similarity=0.072 Sum_probs=56.1
Q ss_pred cceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEEE
Q 043301 153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVE 232 (244)
Q Consensus 153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (244)
|.+.|-+|. +|.++|.+|.+|||++++ +......+|+.+-.+.+|.||| .|.|.+.++ .+.|.|+
T Consensus 2 l~v~vi~a~-~L~~~d~~g~~DPYv~v~---------~~~~~~~kT~v~~~t~nP~Wne---~f~~~~~~~--~~~l~v~ 66 (121)
T cd04054 2 LYIRIVEGK-NLPAKDITGSSDPYCIVK---------VDNEVIIRTATVWKTLNPFWGE---EYTVHLPPG--FHTVSFY 66 (121)
T ss_pred EEEEEEEee-CCcCCCCCCCCCceEEEE---------ECCEeeeeeeeEcCCCCCcccc---eEEEeeCCC--CCEEEEE
Confidence 457888997 489999999999998754 2222224666444578888887 699988654 3789999
Q ss_pred EeccCccccc
Q 043301 233 FWDLDDVLVN 242 (244)
Q Consensus 233 ~~~~~~~~~~ 242 (244)
|||+|+.+++
T Consensus 67 v~d~~~~~~d 76 (121)
T cd04054 67 VLDEDTLSRD 76 (121)
T ss_pred EEECCCCCCC
Confidence 9999987764
No 42
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=98.65 E-value=1.7e-08 Score=78.82 Aligned_cols=74 Identities=11% Similarity=0.121 Sum_probs=56.2
Q ss_pred CcceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEee-cCCCCChhhhhhhhhhcCCCCccceeE
Q 043301 152 PEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTIS-ESYPYSDDTLAQFILRLQNSLRSKNMS 230 (244)
Q Consensus 152 ~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (244)
.|.+.|.+|. +|-++|..|.+|||+++. +.. ..++|++... +.+|.||| .|.|.+... .++.|.
T Consensus 2 ~L~V~v~~A~-~L~~~~~~~~~dpyv~v~---------~~~-~~~kT~~~~~~~~nP~Wne---~f~f~v~~~-~~~~l~ 66 (118)
T cd08681 2 TLVVVVLKAR-NLPNKRKLDKQDPYCVLR---------IGG-VTKKTKTDFRGGQHPEWDE---ELRFEITED-KKPILK 66 (118)
T ss_pred EEEEEEEEcc-CCCCCCcCCCCCceEEEE---------ECC-CccccccccCCCCCCccCc---eEEEEecCC-CCCEEE
Confidence 4668899997 588899999999998743 332 3456664334 46888888 699998765 567899
Q ss_pred EEEeccCccc
Q 043301 231 VEFWDLDDVL 240 (244)
Q Consensus 231 ~~~~~~~~~~ 240 (244)
|+|||||..+
T Consensus 67 i~v~d~~~~~ 76 (118)
T cd08681 67 VAVFDDDKRK 76 (118)
T ss_pred EEEEeCCCCC
Confidence 9999999765
No 43
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=98.64 E-value=1.3e-08 Score=84.04 Aligned_cols=75 Identities=8% Similarity=0.105 Sum_probs=58.1
Q ss_pred cceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEee-cCCCCChhhhhhhhhhcCCCCccceeEE
Q 043301 153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTIS-ESYPYSDDTLAQFILRLQNSLRSKNMSV 231 (244)
Q Consensus 153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (244)
|.++|.+|. +|.++|.+|.+|||++ ..|.. ..++|+++.. +.+|.||| .|.|.+.. ..+..|.|
T Consensus 2 L~V~Vi~A~-~L~~~d~~g~sDPYV~---------v~l~~-~~~kTk~~~~~t~nP~WNE---~F~f~v~~-~~~~~l~v 66 (150)
T cd04019 2 LRVTVIEAQ-DLVPSDKNRVPEVFVK---------AQLGN-QVLRTRPSQTRNGNPSWNE---ELMFVAAE-PFEDHLIL 66 (150)
T ss_pred EEEEEEEeE-CCCCCCCCCCCCeEEE---------EEECC-EEeeeEeccCCCCCCcccC---cEEEEecC-ccCCeEEE
Confidence 568899997 5899999999999987 44444 4667885555 48899988 69998743 33578999
Q ss_pred EEeccCccccc
Q 043301 232 EFWDLDDVLVN 242 (244)
Q Consensus 232 ~~~~~~~~~~~ 242 (244)
+|||+|..++|
T Consensus 67 ~V~d~~~~~~d 77 (150)
T cd04019 67 SVEDRVGPNKD 77 (150)
T ss_pred EEEEecCCCCC
Confidence 99999987655
No 44
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=98.64 E-value=1.7e-08 Score=79.17 Aligned_cols=73 Identities=16% Similarity=0.158 Sum_probs=54.7
Q ss_pred cceeeecccccccccCCCCcchhhHHHHhhhhccccccc--ccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeE
Q 043301 153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLS--ETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMS 230 (244)
Q Consensus 153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (244)
+.++|-+|. +|-++|.+|.+|||+++. +. +...++|+++-.+.+|.||| +|.|.+.+. .+..|.
T Consensus 2 L~V~vi~a~-~L~~~~~~~~~Dpyv~v~---------~~~~~~~~~kT~vv~~t~nP~Wne---~f~f~i~~~-~~~~l~ 67 (119)
T cd04036 2 LTVRVLRAT-NITKGDLLSTPDCYVELW---------LPTASDEKKRTKTIKNSINPVWNE---TFEFRIQSQ-VKNVLE 67 (119)
T ss_pred eEEEEEEee-CCCccCCCCCCCcEEEEE---------EcCCCCccCccceecCCCCCccce---EEEEEeCcc-cCCEEE
Confidence 457888887 478889899999997744 21 13456777444467788887 699988775 456799
Q ss_pred EEEeccCcc
Q 043301 231 VEFWDLDDV 239 (244)
Q Consensus 231 ~~~~~~~~~ 239 (244)
|+|||||+.
T Consensus 68 v~v~d~d~~ 76 (119)
T cd04036 68 LTVMDEDYV 76 (119)
T ss_pred EEEEECCCC
Confidence 999999987
No 45
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=98.57 E-value=4.6e-08 Score=77.07 Aligned_cols=90 Identities=16% Similarity=0.161 Sum_probs=63.8
Q ss_pred CCcEEEEEec--cCCcceeeecccccccccCCCCcchhhHHHHhhhhcccccccc--cCCCCceeEeecCCCCChhhhhh
Q 043301 140 QDVELRTIQE--RNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSE--TGDQGSKVTISESYPYSDDTLAQ 215 (244)
Q Consensus 140 ~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~--~~~~~~~~~i~~~~~~~~~~~~~ 215 (244)
|++++..... ...+.++|-+|. +|-++|.+|..|||+++. +.+ ....+|++.-.+.+|.||| +
T Consensus 3 G~l~~~l~y~~~~~~L~v~v~~a~-~L~~~d~~~~~dpyv~v~---------~~~~~~~~~kT~v~~~t~~P~Wne---~ 69 (125)
T cd08386 3 GRIQFSVSYDFQESTLTLKILKAV-ELPAKDFSGTSDPFVKIY---------LLPDKKHKLETKVKRKNLNPHWNE---T 69 (125)
T ss_pred cEEEEEEEECCCCCEEEEEEEEec-CCCCccCCCCCCceEEEE---------ECCCCCcceeeeeecCCCCCccce---e
Confidence 5555555432 556789999997 489999999999998743 222 2335677555578888888 6
Q ss_pred hhhhcCCC--CccceeEEEEeccCccccc
Q 043301 216 FILRLQNS--LRSKNMSVEFWDLDDVLVN 242 (244)
Q Consensus 216 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 242 (244)
|.|...+. ..++.|.++|||+|+.+++
T Consensus 70 f~f~~~~~~~l~~~~l~~~v~d~d~~~~~ 98 (125)
T cd08386 70 FLFEGFPYEKLQQRVLYLQVLDYDRFSRN 98 (125)
T ss_pred EEEcccCHHHhCCCEEEEEEEeCCCCcCC
Confidence 88874443 3467899999999987654
No 46
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=98.56 E-value=4.4e-08 Score=77.62 Aligned_cols=74 Identities=16% Similarity=0.164 Sum_probs=56.5
Q ss_pred cceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEEE
Q 043301 153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVE 232 (244)
Q Consensus 153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (244)
|.++|-.|. +|-++|.+|.+|||+.+. ++.....+|.+.-.+.+|.||| .|.|.+.+ +..|.||
T Consensus 2 l~v~v~~A~-~L~~~~~~~~~dpyv~v~---------~~~~~~~kT~v~~~t~nP~Wne---~f~~~~~~---~~~l~i~ 65 (123)
T cd08382 2 VRLTVLCAD-GLAKRDLFRLPDPFAVIT---------VDGGQTHSTDVAKKTLDPKWNE---HFDLTVGP---SSIITIQ 65 (123)
T ss_pred eEEEEEEec-CCCccCCCCCCCcEEEEE---------ECCccceEccEEcCCCCCcccc---eEEEEeCC---CCEEEEE
Confidence 568889997 488999999999997743 3333445676444477888888 69999975 6799999
Q ss_pred EeccCccccc
Q 043301 233 FWDLDDVLVN 242 (244)
Q Consensus 233 ~~~~~~~~~~ 242 (244)
|||+|...++
T Consensus 66 V~d~~~~~~~ 75 (123)
T cd08382 66 VFDQKKFKKK 75 (123)
T ss_pred EEECCCCCCC
Confidence 9999987653
No 47
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=98.54 E-value=5.6e-08 Score=80.24 Aligned_cols=75 Identities=13% Similarity=0.174 Sum_probs=55.9
Q ss_pred cceeeecccccccccCCCCcchhhHHHHhhhhcccccccc----cCCCCceeEeecCCCCChhhhhhhhhhcC-------
Q 043301 153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSE----TGDQGSKVTISESYPYSDDTLAQFILRLQ------- 221 (244)
Q Consensus 153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~------- 221 (244)
|.+.|-+|.+ |.+ .+|.+|||+++. +.+ ..+++|++.-.+.+|.||| +|.|.+.
T Consensus 2 L~V~Vi~Arn-L~~--~~g~sDPYV~V~---------l~~~~~k~~~~kT~v~~~t~nP~wNE---~F~F~v~~~~~~~~ 66 (148)
T cd04010 2 LSVRVIECSD-LAL--KNGTCDPYASVT---------LIYSNKKQDTKRTKVKKKTNNPQFDE---AFYFDVTIDSSPEK 66 (148)
T ss_pred EEEEEEeCcC-CCC--CCCCCCceEEEE---------EeCCcccCcccCCccEeCCCCCccce---EEEEEEeccccccc
Confidence 5688899975 555 789999998743 332 1466788555678888888 6999985
Q ss_pred -----C--CCccceeEEEEeccCccccc
Q 043301 222 -----N--SLRSKNMSVEFWDLDDVLVN 242 (244)
Q Consensus 222 -----~--~~~~~~~~~~~~~~~~~~~~ 242 (244)
+ +..+..|.|+|||.|+.+++
T Consensus 67 ~~~~~~~~~~~~~~L~i~V~d~~~~~~d 94 (148)
T cd04010 67 KQFEMPEEDAEKLELRVDLWHASMGGGD 94 (148)
T ss_pred ccccCCcccccEEEEEEEEEcCCCCCCC
Confidence 2 23457899999999988765
No 48
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=98.52 E-value=4.9e-08 Score=77.05 Aligned_cols=77 Identities=16% Similarity=0.138 Sum_probs=56.3
Q ss_pred cceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEEE
Q 043301 153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVE 232 (244)
Q Consensus 153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (244)
++++|-.|. +|.+++.+|.+|||+++. ..-......+|++.-.+.+|.||| +|.|.+..+ .++.|.|+
T Consensus 3 ~~V~v~~a~-~L~~~~~~~~~Dpyv~v~-------~~~~~~~~~kT~~~~~t~~P~Wne---~f~f~i~~~-~~~~L~i~ 70 (126)
T cd04043 3 FTIRIVRAE-NLKADSSNGLSDPYVTLV-------DTNGKRRIAKTRTIYDTLNPRWDE---EFELEVPAG-EPLWISAT 70 (126)
T ss_pred EEEEEEEeE-CCCCCCCCCCCCceEEEE-------ECCCCeeeecccEecCCCCCcccc---eEEEEcCCC-CCCEEEEE
Confidence 457888887 489999999999998753 100111234666444577888887 699998876 57899999
Q ss_pred EeccCcccc
Q 043301 233 FWDLDDVLV 241 (244)
Q Consensus 233 ~~~~~~~~~ 241 (244)
|||||..+.
T Consensus 71 v~d~d~~~~ 79 (126)
T cd04043 71 VWDRSFVGK 79 (126)
T ss_pred EEECCCCCC
Confidence 999998644
No 49
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=98.50 E-value=4.5e-08 Score=77.24 Aligned_cols=87 Identities=14% Similarity=0.142 Sum_probs=64.4
Q ss_pred CCcEEEEEec--cCCcceeeecccccccccCCCCcchhhHHHHhhhhcccccccc----cCCCCceeEeecCCCCChhhh
Q 043301 140 QDVELRTIQE--RNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSE----TGDQGSKVTISESYPYSDDTL 213 (244)
Q Consensus 140 ~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~----~~~~~~~~~i~~~~~~~~~~~ 213 (244)
|++++...-. .+.+.++|-.|. +|.++|.++.+|||+++. +.+ ....+|++.-.+.+|.|||
T Consensus 3 G~l~~~l~y~~~~~~L~V~vi~a~-~L~~~~~~~~~dpyv~v~---------l~~~~~~~~~~kT~v~~~~~nP~wne-- 70 (127)
T cd04030 3 GRIQLTIRYSSQRQKLIVTVHKCR-NLPPCDSSDIPDPYVRLY---------LLPDKSKSTRRKTSVKKDNLNPVFDE-- 70 (127)
T ss_pred eEEEEEEEEeCCCCEEEEEEEEEE-CCCCccCCCCCCceEEEE---------EEcCCCCCceEecccccCCCCCEECe--
Confidence 5555555433 467889999997 589999999999998744 322 2455677444477888888
Q ss_pred hhhhhhcCCCCc-cceeEEEEeccCcc
Q 043301 214 AQFILRLQNSLR-SKNMSVEFWDLDDV 239 (244)
Q Consensus 214 ~~~~~~~~~~~~-~~~~~~~~~~~~~~ 239 (244)
+|.|.+..++. ++.|.|.|||+|..
T Consensus 71 -~f~f~i~~~~l~~~~l~i~v~~~~~~ 96 (127)
T cd04030 71 -TFEFPVSLEELKRRTLDVAVKNSKSF 96 (127)
T ss_pred -EEEEecCHHHhcCCEEEEEEEECCcc
Confidence 69999987654 57899999999874
No 50
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=98.49 E-value=7.7e-08 Score=75.79 Aligned_cols=75 Identities=24% Similarity=0.283 Sum_probs=55.6
Q ss_pred cceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEEE
Q 043301 153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVE 232 (244)
Q Consensus 153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (244)
|.++|-+|. +|.++|.+|.+|||+++.. .. ...+|++.-.+.+|.||| +|.|.+.... +..|.|+
T Consensus 2 L~v~vi~a~-~L~~~d~~~~~DPyv~v~~---------~~-~~~kT~v~~~t~nP~Wne---~f~f~~~~~~-~~~l~~~ 66 (123)
T cd04025 2 LRCHVLEAR-DLAPKDRNGTSDPFVRVFY---------NG-QTLETSVVKKSCYPRWNE---VFEFELMEGA-DSPLSVE 66 (123)
T ss_pred EEEEEEEee-CCCCCCCCCCcCceEEEEE---------CC-EEEeceeecCCCCCccCc---EEEEEcCCCC-CCEEEEE
Confidence 457888997 4899999999999988541 11 123455333477888887 6999987654 7889999
Q ss_pred EeccCccccc
Q 043301 233 FWDLDDVLVN 242 (244)
Q Consensus 233 ~~~~~~~~~~ 242 (244)
|||+|..+.+
T Consensus 67 v~d~~~~~~~ 76 (123)
T cd04025 67 VWDWDLVSKN 76 (123)
T ss_pred EEECCCCCCC
Confidence 9999987653
No 51
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=98.45 E-value=7.7e-08 Score=78.04 Aligned_cols=74 Identities=11% Similarity=0.116 Sum_probs=55.0
Q ss_pred cceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEEE
Q 043301 153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVE 232 (244)
Q Consensus 153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (244)
|.++|.+|. +|.++|..|.+|||+++. +. ....+|+++-.+.+|.||| .|.|.+.. ..+..|.||
T Consensus 17 L~V~Vi~A~-~L~~~d~~g~~DPYv~v~---------~~-~~~~kT~vi~~t~nP~Wne---~f~f~v~~-~~~~~l~i~ 81 (136)
T cd08375 17 LMVVIVEGR-DLKPCNSNGKSDPYCEVS---------MG-SQEHKTKVVSDTLNPKWNS---SMQFFVKD-LEQDVLCIT 81 (136)
T ss_pred EEEEEEEee-CCCCCCCCCCcCcEEEEE---------EC-CEeeeccccCCCCCCccCc---eEEEEecC-ccCCEEEEE
Confidence 348899997 489999999999998744 22 1245677444477888887 69888853 345789999
Q ss_pred EeccCcccc
Q 043301 233 FWDLDDVLV 241 (244)
Q Consensus 233 ~~~~~~~~~ 241 (244)
|||+|..+.
T Consensus 82 V~D~d~~~~ 90 (136)
T cd08375 82 VFDRDFFSP 90 (136)
T ss_pred EEECCCCCC
Confidence 999998764
No 52
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=98.45 E-value=1.5e-07 Score=73.90 Aligned_cols=80 Identities=13% Similarity=0.156 Sum_probs=58.2
Q ss_pred cCCcceeeecccccccccC-CCCcchhhHHHHhhhhccccccccc--CCCCceeEeecCCCCChhhhhhhhhhcCCCCc-
Q 043301 150 RNPEDLTFHDVFSSFTEKD-RNQLDDITENIESEIAGIKKTLSET--GDQGSKVTISESYPYSDDTLAQFILRLQNSLR- 225 (244)
Q Consensus 150 ~~~~~~~v~~~~~~~~~~~-~n~l~d~~~~~~~~~~~~~~~l~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~- 225 (244)
...+.+.|-+|. +|.++| .+|..|||+++. +.+. ...+|+..-.+.+|.||| .|.|.+..++.
T Consensus 13 ~~~L~V~v~~a~-~L~~~~~~~~~~dpyV~v~---------l~~~~~~~~~T~v~~~~~~P~wne---~f~f~i~~~~l~ 79 (123)
T cd08390 13 EEQLTVSLIKAR-NLPPRTKDVAHCDPFVKVC---------LLPDERRSLQSKVKRKTQNPNFDE---TFVFQVSFKELQ 79 (123)
T ss_pred CCEEEEEEEEec-CCCCccCCCCCCCcEEEEE---------EeeCCCCceEeeeEcCCCCCccce---EEEEEcCHHHhc
Confidence 345678999997 589998 789999997743 2222 233455333578888888 69999877644
Q ss_pred cceeEEEEeccCccccc
Q 043301 226 SKNMSVEFWDLDDVLVN 242 (244)
Q Consensus 226 ~~~~~~~~~~~~~~~~~ 242 (244)
.+.|.|+|||+|..+++
T Consensus 80 ~~~l~i~v~d~~~~~~~ 96 (123)
T cd08390 80 RRTLRLSVYDVDRFSRH 96 (123)
T ss_pred ccEEEEEEEECCcCCCC
Confidence 57899999999987654
No 53
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=98.44 E-value=8.5e-08 Score=76.46 Aligned_cols=72 Identities=10% Similarity=0.087 Sum_probs=51.4
Q ss_pred cceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEEE
Q 043301 153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVE 232 (244)
Q Consensus 153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (244)
|.+.|.+|.+ |.+ ++.+|||+++ .|.....++|+ +....+|.||| +|.|...+++. .+|.|+
T Consensus 6 L~V~Vi~A~~-L~~---~~~~DPYv~v---------~l~~~~~~kT~-v~~~~nP~WnE---~f~f~~~~~~~-~~l~v~ 67 (126)
T cd08400 6 LQLNVLEAHK-LPV---KHVPHPYCVI---------SLNEVKVARTK-VREGPNPVWSE---EFVFDDLPPDV-NSFTIS 67 (126)
T ss_pred EEEEEEEeeC-CCC---CCCCCeeEEE---------EECCEeEEEee-cCCCCCCccCC---EEEEecCCCCc-CEEEEE
Confidence 6689999985 554 4579999774 34332234555 35677888888 69998666544 469999
Q ss_pred EeccCccccc
Q 043301 233 FWDLDDVLVN 242 (244)
Q Consensus 233 ~~~~~~~~~~ 242 (244)
|||||+.+++
T Consensus 68 v~d~~~~~~d 77 (126)
T cd08400 68 LSNKAKRSKD 77 (126)
T ss_pred EEECCCCCCC
Confidence 9999998765
No 54
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=98.44 E-value=1.3e-07 Score=74.98 Aligned_cols=80 Identities=14% Similarity=0.148 Sum_probs=60.0
Q ss_pred cCCcceeeecccccccccCCCCcchhhHHHHhhhhccccccccc----CCCCceeEeecCCCCChhhhhhhhhhcCCCC-
Q 043301 150 RNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSET----GDQGSKVTISESYPYSDDTLAQFILRLQNSL- 224 (244)
Q Consensus 150 ~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~- 224 (244)
.+.+.++|-+|.+ |.+++.++..|||+++. |.+. ..++|++.-.+.+|.||| +|.|.+.+.+
T Consensus 13 ~~~L~V~v~~a~~-L~~~~~~~~~dpyv~v~---------l~~~~~~~~~~~T~~~~~~~~P~wne---~f~f~i~~~~l 79 (134)
T cd00276 13 AERLTVVVLKARN-LPPSDGKGLSDPYVKVS---------LLQGGKKLKKKKTSVKKGTLNPVFNE---AFSFDVPAEQL 79 (134)
T ss_pred CCEEEEEEEEeeC-CCCccCCCCCCcEEEEE---------EEcCCeEeeeecCcceecCCCCeeee---eEEEECCHHHh
Confidence 4567799999974 88899899999998733 3332 345677444577888888 6999998876
Q ss_pred ccceeEEEEeccCccccc
Q 043301 225 RSKNMSVEFWDLDDVLVN 242 (244)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~ 242 (244)
....|.|+|||+|...++
T Consensus 80 ~~~~l~~~v~d~~~~~~~ 97 (134)
T cd00276 80 EEVSLVITVVDKDSVGRN 97 (134)
T ss_pred CCcEEEEEEEecCCCCCC
Confidence 367899999999986543
No 55
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.44 E-value=1.6e-07 Score=74.73 Aligned_cols=76 Identities=14% Similarity=0.072 Sum_probs=54.8
Q ss_pred cceeeecccccccccCCCCcchhhHHHHhhhhccccccccc-CCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEE
Q 043301 153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSET-GDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSV 231 (244)
Q Consensus 153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (244)
+.+.|-+|. .|-++|.+|.+|||+++. +... ...+|+.+-.+.+|.||| +|.|.+.. ..+..|.|
T Consensus 2 lrV~Vi~a~-~L~~~d~~g~~DPYv~v~---------~~~~~~~~kT~~v~~t~nP~Wne---~f~f~~~~-~~~~~L~~ 67 (124)
T cd04037 2 VRVYVVRAR-NLQPKDPNGKSDPYLKIK---------LGKKKINDRDNYIPNTLNPVFGK---MFELEATL-PGNSILKI 67 (124)
T ss_pred EEEEEEECc-CCCCCCCCCCCCcEEEEE---------ECCeeccceeeEEECCCCCccce---EEEEEecC-CCCCEEEE
Confidence 347788887 488999999999998754 2222 224455444578888887 69887643 34678999
Q ss_pred EEeccCccccc
Q 043301 232 EFWDLDDVLVN 242 (244)
Q Consensus 232 ~~~~~~~~~~~ 242 (244)
+|||||..+.|
T Consensus 68 ~V~d~d~~~~d 78 (124)
T cd04037 68 SVMDYDLLGSD 78 (124)
T ss_pred EEEECCCCCCC
Confidence 99999987654
No 56
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=98.43 E-value=1.1e-07 Score=76.58 Aligned_cols=76 Identities=17% Similarity=0.162 Sum_probs=55.1
Q ss_pred cceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCC--CC------
Q 043301 153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQN--SL------ 224 (244)
Q Consensus 153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~------ 224 (244)
+.+.|-+|. +|.++|.+|..|||+++. +. ...++|+++-.+.+|.||| .|.|.+.. ++
T Consensus 3 l~v~V~~a~-~L~~~d~~g~~dpyv~v~---------~~-~~~~kT~v~~~t~nP~Wne---~~~f~~~~~~~~~~~~~~ 68 (135)
T cd04017 3 LRAYIYQAR-DLLAADKSGLSDPFARVS---------FL-NQSQETEVIKETLSPTWDQ---TLIFDEVELYGSPEEIAQ 68 (135)
T ss_pred EEEEEEEee-cCcCCCCCCCCCCEEEEE---------EC-CeeeEeeeEcCCCCCccCc---EEEEeeeeccCChHHhhc
Confidence 447888997 489999999999998743 22 2355677454577888888 58887432 11
Q ss_pred ccceeEEEEeccCccccc
Q 043301 225 RSKNMSVEFWDLDDVLVN 242 (244)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~ 242 (244)
....|.|||||+|+.++|
T Consensus 69 ~~~~l~v~V~d~d~~~~d 86 (135)
T cd04017 69 NPPLVVVELFDQDSVGKD 86 (135)
T ss_pred CCCEEEEEEEeCcCCCCC
Confidence 235799999999998765
No 57
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=98.43 E-value=1.1e-07 Score=75.44 Aligned_cols=74 Identities=8% Similarity=0.141 Sum_probs=56.8
Q ss_pred cceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCC--CccceeE
Q 043301 153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNS--LRSKNMS 230 (244)
Q Consensus 153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 230 (244)
|.++|-+|. +|.++|.+|.+|||+++. +..+ +++|++.-.+.+|.||| .|.|.+... ..+..|.
T Consensus 2 L~V~vi~A~-~L~~~d~~g~~dpyv~v~---------~~~~-~~rT~v~~~t~nP~Wne---~f~f~~~~~~~~~~~~l~ 67 (127)
T cd04022 2 LVVEVVDAQ-DLMPKDGQGSSSAYVELD---------FDGQ-KKRTRTKPKDLNPVWNE---KLVFNVSDPSRLSNLVLE 67 (127)
T ss_pred eEEEEEEee-CCCCCCCCCCcCcEEEEE---------ECCE-EecceeEcCCCCCccce---EEEEEccCHHHccCCeEE
Confidence 568899997 489999999999998743 3322 45777544577888888 699998753 3468899
Q ss_pred EEEeccCccc
Q 043301 231 VEFWDLDDVL 240 (244)
Q Consensus 231 ~~~~~~~~~~ 240 (244)
|+|||+|+.+
T Consensus 68 ~~V~d~~~~~ 77 (127)
T cd04022 68 VYVYNDRRSG 77 (127)
T ss_pred EEEeeCCCCc
Confidence 9999999874
No 58
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.42 E-value=1.3e-07 Score=75.34 Aligned_cols=81 Identities=14% Similarity=0.123 Sum_probs=55.7
Q ss_pred cceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEEE
Q 043301 153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVE 232 (244)
Q Consensus 153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (244)
|.++|-.|. +|.++|..|.+|||+++.-.-. +.-....+.+|++.-.+.+|.||| +|.|.+.+. ++.|.|+
T Consensus 2 L~v~Vi~a~-~L~~~d~~~~~Dpyv~v~~~~~---~~~~~~~~~kT~v~~~t~nP~Wne---~f~f~~~~~--~~~l~~~ 72 (133)
T cd04033 2 LRVKVLAGI-DLAKKDIFGASDPYVKISLYDP---DGNGEIDSVQTKTIKKTLNPKWNE---EFFFRVNPR--EHRLLFE 72 (133)
T ss_pred EEEEEEEeE-CCCcccCCCCcCcEEEEEEECC---CCCCcccceeeeEEcCCCCCcEee---EEEEEEcCC--CCEEEEE
Confidence 457888887 4889999999999987441000 000011234666444477888887 699998764 4689999
Q ss_pred EeccCccccc
Q 043301 233 FWDLDDVLVN 242 (244)
Q Consensus 233 ~~~~~~~~~~ 242 (244)
|||+|+.+++
T Consensus 73 v~d~~~~~~~ 82 (133)
T cd04033 73 VFDENRLTRD 82 (133)
T ss_pred EEECCCCCCC
Confidence 9999987764
No 59
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=98.42 E-value=1.2e-07 Score=78.84 Aligned_cols=80 Identities=18% Similarity=0.250 Sum_probs=54.9
Q ss_pred cceeeecccccccccCCCCcchhhHHHHhh---h----------------hcccccccccCCCCceeEeecCCCCChhhh
Q 043301 153 EDLTFHDVFSSFTEKDRNQLDDITENIESE---I----------------AGIKKTLSETGDQGSKVTISESYPYSDDTL 213 (244)
Q Consensus 153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~---~----------------~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~ 213 (244)
|.++|-+|. +|.++|.+|.+|||++++-. . ...+..+......+|++.-.+.+|.|||
T Consensus 30 L~V~vi~a~-~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~WnE-- 106 (153)
T cd08676 30 LKVTVIEAK-GLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWNE-- 106 (153)
T ss_pred EEEEEEecc-CCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCcccc--
Confidence 448899997 48999999999999775410 0 0111222333345566444478888887
Q ss_pred hhhhhhcCCCCccceeEEEEeccC
Q 043301 214 AQFILRLQNSLRSKNMSVEFWDLD 237 (244)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~ 237 (244)
+|.|.+... .+..|.|+|||+|
T Consensus 107 -~F~f~v~~~-~~~~L~i~V~D~d 128 (153)
T cd08676 107 -TFRFEVEDV-SNDQLHLDIWDHD 128 (153)
T ss_pred -EEEEEeccC-CCCEEEEEEEecC
Confidence 699988543 4678999999997
No 60
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=98.41 E-value=5.6e-08 Score=59.18 Aligned_cols=29 Identities=38% Similarity=1.063 Sum_probs=14.2
Q ss_pred ccccccccCCCC-CcEEeCCCCCccccccc
Q 043301 33 IICDICETSLQG-PAYGCGTCEFSIHKSCA 61 (244)
Q Consensus 33 ~~C~~C~~~i~g-~~Y~C~~C~F~lH~~Ca 61 (244)
+.|++|++++.+ ..|+|.+|+|++|..||
T Consensus 1 ~~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 1 FRCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp ---TTTS----S--EEE-TTT-----HHHH
T ss_pred CcCCcCCCcCCCCceEECccCCCccChhcC
Confidence 479999999988 99999999999999996
No 61
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=98.39 E-value=1.2e-07 Score=76.23 Aligned_cols=72 Identities=11% Similarity=0.102 Sum_probs=53.2
Q ss_pred cceeeecccc--cccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeE
Q 043301 153 EDLTFHDVFS--SFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMS 230 (244)
Q Consensus 153 ~~~~v~~~~~--~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (244)
|.++|..|.+ .|..+|..|-+|||+.++ +..+ +.+|++.-.++||.||| +|.|.+... +..|.
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~---------~g~~-~~rTk~~~~~~nP~WnE---~f~f~v~~~--~~~l~ 66 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAK---------YGPK-WVRTRTVEDSSNPRWNE---QYTWPVYDP--CTVLT 66 (126)
T ss_pred eEEEEEEeECCccccccccCCCCCeeEEEE---------ECCE-EeEcCcccCCCCCccee---EEEEEecCC--CCEEE
Confidence 4688888975 378999999999998844 3322 44677333367888877 799988543 34899
Q ss_pred EEEeccCcc
Q 043301 231 VEFWDLDDV 239 (244)
Q Consensus 231 ~~~~~~~~~ 239 (244)
|+|||+|+.
T Consensus 67 v~V~d~d~~ 75 (126)
T cd08379 67 VGVFDNSQS 75 (126)
T ss_pred EEEEECCCc
Confidence 999999986
No 62
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=98.38 E-value=2e-07 Score=73.97 Aligned_cols=72 Identities=18% Similarity=0.207 Sum_probs=51.2
Q ss_pred ceeeecccccccccCCCCcchhhHHHHhhhhcccccccc-cCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEEE
Q 043301 154 DLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSE-TGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVE 232 (244)
Q Consensus 154 ~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (244)
.+.|-+|.+ |-+ .+|.+|||+.+. ++. ..+.+|+++..+.+|.||| .|.|.+.+. ...|.|+
T Consensus 2 ~v~v~~A~~-L~~--~~g~~dpyv~v~---------~~~~~~~~kT~v~~~t~nP~Wne---~f~f~~~~~--~~~l~~~ 64 (126)
T cd08678 2 LVKNIKANG-LSE--AAGSSNPYCVLE---------MDEPPQKYQSSTQKNTSNPFWDE---HFLFELSPN--SKELLFE 64 (126)
T ss_pred EEEEEEecC-CCC--CCCCcCCEEEEE---------ECCCCcEEEeEEEecCCCCccCc---eEEEEeCCC--CCEEEEE
Confidence 467778864 444 778999998744 321 2235677444567888887 699999654 5679999
Q ss_pred EeccCccccc
Q 043301 233 FWDLDDVLVN 242 (244)
Q Consensus 233 ~~~~~~~~~~ 242 (244)
|||||..+++
T Consensus 65 v~d~~~~~~~ 74 (126)
T cd08678 65 VYDNGKKSDS 74 (126)
T ss_pred EEECCCCCCC
Confidence 9999998754
No 63
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=98.37 E-value=2.7e-07 Score=72.69 Aligned_cols=87 Identities=14% Similarity=0.133 Sum_probs=62.3
Q ss_pred CCcEEEEEec--cCCcceeeecccccccccCCCCcchhhHHHHhhhhcccccccc----cCCCCceeEeecCCCCChhhh
Q 043301 140 QDVELRTIQE--RNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSE----TGDQGSKVTISESYPYSDDTL 213 (244)
Q Consensus 140 ~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~----~~~~~~~~~i~~~~~~~~~~~ 213 (244)
|++++..... ...+.++|-+|. +|.+++..|..|||+++. +.+ ...++|+++-.+.+|.|||
T Consensus 2 G~~~~~l~y~~~~~~L~V~v~~a~-~L~~~~~~~~~dpyv~v~---------~~~~~~~~~~~rT~v~~~~~~P~Wne-- 69 (123)
T cd04035 2 GTLEFTLLYDPANSALHCTIIRAK-GLKAMDANGLSDPYVKLN---------LLPGASKATKLRTKTVHKTRNPEFNE-- 69 (123)
T ss_pred cEEEEEEEEeCCCCEEEEEEEEee-CCCCCCCCCCCCceEEEE---------EecCCCCCCceeeeeecCCCCCCccc--
Confidence 5555554443 456789999997 488999999999998844 221 2356777555578888888
Q ss_pred hhhhhh-cCCCCc-cceeEEEEeccCcc
Q 043301 214 AQFILR-LQNSLR-SKNMSVEFWDLDDV 239 (244)
Q Consensus 214 ~~~~~~-~~~~~~-~~~~~~~~~~~~~~ 239 (244)
+|.|. +.+++. +..|.|+|||+|..
T Consensus 70 -~f~f~~~~~~~~~~~~l~~~v~d~~~~ 96 (123)
T cd04035 70 -TLTYYGITEEDIQRKTLRLLVLDEDRF 96 (123)
T ss_pred -eEEEcCCCHHHhCCCEEEEEEEEcCCc
Confidence 58885 444444 57899999999976
No 64
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=98.36 E-value=2.2e-07 Score=73.94 Aligned_cols=73 Identities=15% Similarity=0.140 Sum_probs=53.6
Q ss_pred cceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEEE
Q 043301 153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVE 232 (244)
Q Consensus 153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (244)
+.++|-+|.+ |-++|.+|.+|||+.+. +.. ...+|+++-.+.+|.||| .|.|.+. +.++.|.|+
T Consensus 5 ~~V~v~~A~~-L~~~d~~g~~dPyv~v~---------~~~-~~~kT~v~~~t~nP~Wne---~f~f~~~--~~~~~l~i~ 68 (126)
T cd04046 5 TQVHVHSAEG-LSKQDSGGGADPYVIIK---------CEG-ESVRSPVQKDTLSPEFDT---QAIFYRK--KPRSPIKIQ 68 (126)
T ss_pred EEEEEEeCcC-CCCCCCCCCcCccEEEE---------ECC-EEEEeCccCCCCCCcccc---eEEEEec--CCCCEEEEE
Confidence 4588889974 78899999999998754 111 235666444467788888 6888765 457889999
Q ss_pred EeccCcccc
Q 043301 233 FWDLDDVLV 241 (244)
Q Consensus 233 ~~~~~~~~~ 241 (244)
|||||+...
T Consensus 69 V~d~~~~~d 77 (126)
T cd04046 69 VWNSNLLCD 77 (126)
T ss_pred EEECCCCCC
Confidence 999997643
No 65
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=98.35 E-value=3e-07 Score=73.37 Aligned_cols=64 Identities=13% Similarity=0.261 Sum_probs=47.6
Q ss_pred cceeeecccccccccCCCCcchhhHHHHhhhhccccccccc----CCCCceeEeecCCCCChhhhhhhhhhcCCCCccce
Q 043301 153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSET----GDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKN 228 (244)
Q Consensus 153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (244)
|.++|.+|.+ | +|.+|||+++ .+++. .+.+||++-.+++|.||| +|.|.+.+ .+-
T Consensus 1 L~V~V~~A~~-L-----~~~sDPYV~l---------~v~~~~~~~~~~KTk~i~~TlnPvWnE---~F~i~l~~---s~~ 59 (118)
T cd08686 1 LNVIVHSAQG-F-----KQSANLYCTL---------EVDSFGYFVKKAKTRVCRDTTEPNWNE---EFEIELEG---SQT 59 (118)
T ss_pred CEEEEEeCCC-C-----CCCCCCEEEE---------EEcCccccceeeeeeeecCCCCCccce---EEEEEeCC---CCE
Confidence 3578888875 3 5789999773 34442 357888555588999988 69999963 559
Q ss_pred eEEEEeccC
Q 043301 229 MSVEFWDLD 237 (244)
Q Consensus 229 ~~~~~~~~~ 237 (244)
|.+.||||+
T Consensus 60 L~~~v~d~~ 68 (118)
T cd08686 60 LRILCYEKC 68 (118)
T ss_pred EEEEEEEcc
Confidence 999999994
No 66
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=98.35 E-value=2.6e-07 Score=72.70 Aligned_cols=75 Identities=11% Similarity=0.095 Sum_probs=55.8
Q ss_pred CcceeeecccccccccCC--CCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCcccee
Q 043301 152 PEDLTFHDVFSSFTEKDR--NQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNM 229 (244)
Q Consensus 152 ~~~~~v~~~~~~~~~~~~--n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (244)
.|.+.|-+|. +|.++|. +|.+|||+.++ +.. ...+|++.-.+.+|.||| +|.|.+.. ..++.|
T Consensus 2 ~l~v~v~~a~-~L~~~~~~~~~~~dPyv~v~---------~~~-~~~kT~~~~~t~~P~Wne---~f~~~~~~-~~~~~l 66 (128)
T cd04024 2 VLRVHVVEAK-DLAAKDRSGKGKSDPYAILS---------VGA-QRFKTQTIPNTLNPKWNY---WCEFPIFS-AQNQLL 66 (128)
T ss_pred EEEEEEEEee-CCCcccCCCCCCcCCeEEEE---------ECC-EEEecceecCCcCCccCC---cEEEEecC-CCCCEE
Confidence 3557888997 4889998 99999998754 221 235666445578888887 68888865 456899
Q ss_pred EEEEeccCcccc
Q 043301 230 SVEFWDLDDVLV 241 (244)
Q Consensus 230 ~~~~~~~~~~~~ 241 (244)
.|+|||+|..+.
T Consensus 67 ~i~v~d~~~~~~ 78 (128)
T cd04024 67 KLILWDKDRFAG 78 (128)
T ss_pred EEEEEECCCCCC
Confidence 999999998654
No 67
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=98.32 E-value=4e-07 Score=73.86 Aligned_cols=78 Identities=19% Similarity=0.265 Sum_probs=56.3
Q ss_pred ceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCC---------
Q 043301 154 DLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSL--------- 224 (244)
Q Consensus 154 ~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--------- 224 (244)
.+.|-+|.+ |..+ .+|..|||+++.-. .. +....++|++.-.+.+|.||| +|.|.+....
T Consensus 2 ~V~Vi~A~~-L~~~-~~g~~dPyv~v~~~-----~~-~~~~~~rT~vv~~t~nP~Wne---~f~f~~~~~~~~~~~~~~~ 70 (137)
T cd08675 2 SVRVLECRD-LALK-SNGTCDPFARVTLN-----YS-SKTDTKRTKVKKKTNNPRFDE---AFYFELTIGFSYEKKSFKV 70 (137)
T ss_pred EEEEEEccC-CCcc-cCCCCCcEEEEEEe-----cC-CcCCeeccceeeCCCCCCcce---EEEEEcccccccccccccc
Confidence 467888874 7888 88999999874410 00 123557777444477888888 6999987763
Q ss_pred -----ccceeEEEEeccCccccc
Q 043301 225 -----RSKNMSVEFWDLDDVLVN 242 (244)
Q Consensus 225 -----~~~~~~~~~~~~~~~~~~ 242 (244)
.+..|.|+|||||+..++
T Consensus 71 ~~~~~~~~~l~i~V~d~~~~~~~ 93 (137)
T cd08675 71 EEEDLEKSELRVELWHASMVSGD 93 (137)
T ss_pred ccccccccEEEEEEEcCCcCcCC
Confidence 567999999999987554
No 68
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=98.31 E-value=2.6e-07 Score=71.05 Aligned_cols=71 Identities=13% Similarity=0.130 Sum_probs=53.8
Q ss_pred cceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEEE
Q 043301 153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVE 232 (244)
Q Consensus 153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (244)
|.++|.+|.+ |-+++..|..|||++++ +.. ..++|++.-.+.+|.||| .|.|.+.... ...|.|+
T Consensus 2 L~V~v~~A~~-L~~~~~~~~~dpyv~v~---------~~~-~~~kT~v~~~t~nP~Wne---~f~f~v~~~~-~~~l~v~ 66 (105)
T cd04050 2 LFVYLDSAKN-LPLAKSTKEPSPYVELT---------VGK-TTQKSKVKERTNNPVWEE---GFTFLVRNPE-NQELEIE 66 (105)
T ss_pred EEEEEeeecC-CCCcccCCCCCcEEEEE---------ECC-EEEeCccccCCCCCcccc---eEEEEeCCCC-CCEEEEE
Confidence 5688999974 88889999999998744 332 345666444577888888 6999987533 4589999
Q ss_pred EeccCc
Q 043301 233 FWDLDD 238 (244)
Q Consensus 233 ~~~~~~ 238 (244)
|||+|.
T Consensus 67 v~d~~~ 72 (105)
T cd04050 67 VKDDKT 72 (105)
T ss_pred EEECCC
Confidence 999986
No 69
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=98.31 E-value=2.8e-07 Score=71.05 Aligned_cols=75 Identities=16% Similarity=0.059 Sum_probs=50.4
Q ss_pred cccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhh---cCCCCccceeEEEEec
Q 043301 159 DVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILR---LQNSLRSKNMSVEFWD 235 (244)
Q Consensus 159 ~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 235 (244)
.|. +|.++|..|.+|||+++...-. .-.....++|+++-.+.+|.||+ |.|. |...+.++.|.|||||
T Consensus 8 ~a~-~L~~~d~~~~~DPyv~v~~~~~----~~~~~~~~kT~vi~~t~nP~Wn~----f~~~~~~l~~~~~~~~l~~~V~d 78 (110)
T cd04047 8 SGK-KLDKKDFFGKSDPFLEISRQSE----DGTWVLVYRTEVIKNTLNPVWKP----FTIPLQKLCNGDYDRPIKIEVYD 78 (110)
T ss_pred EeC-CCCCCCCCCCCCeeEEEEEECC----CCCEEEEEeeeEeccCCCCceEE----EEEEHHHhcCCCcCCEEEEEEEE
Confidence 344 4788999999999987531000 00011245677455578999994 5543 5566778999999999
Q ss_pred cCccccc
Q 043301 236 LDDVLVN 242 (244)
Q Consensus 236 ~~~~~~~ 242 (244)
||+.+++
T Consensus 79 ~d~~~~d 85 (110)
T cd04047 79 YDSSGKH 85 (110)
T ss_pred eCCCCCC
Confidence 9998654
No 70
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=98.29 E-value=2.9e-07 Score=75.72 Aligned_cols=73 Identities=14% Similarity=0.162 Sum_probs=54.7
Q ss_pred cceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEEE
Q 043301 153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVE 232 (244)
Q Consensus 153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (244)
|.+.|-.|.+ |...|. +.+|||+.++ +.. ...+|+++-.+.+|.||| .|+|.+... +..|.++
T Consensus 4 L~V~Vi~a~n-L~~~d~-~~sDPYV~v~---------~g~-~~~kT~vvk~t~nP~WnE---~f~f~i~~~--~~~l~~~ 66 (145)
T cd04038 4 LKVRVVRGTN-LAVRDF-TSSDPYVVLT---------LGN-QKVKTRVIKKNLNPVWNE---ELTLSVPNP--MAPLKLE 66 (145)
T ss_pred EEEEEEeeEC-CCCCCC-CCcCcEEEEE---------ECC-EEEEeeeEcCCCCCeecc---cEEEEecCC--CCEEEEE
Confidence 5578888864 777777 7899998754 222 246677555678888888 699887644 8899999
Q ss_pred EeccCccccc
Q 043301 233 FWDLDDVLVN 242 (244)
Q Consensus 233 ~~~~~~~~~~ 242 (244)
|||||+.+++
T Consensus 67 V~D~d~~~~d 76 (145)
T cd04038 67 VFDKDTFSKD 76 (145)
T ss_pred EEECCCCCCC
Confidence 9999988764
No 71
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=98.29 E-value=4.5e-07 Score=71.84 Aligned_cols=76 Identities=9% Similarity=0.070 Sum_probs=55.8
Q ss_pred CcceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEE
Q 043301 152 PEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSV 231 (244)
Q Consensus 152 ~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (244)
.+.++|.+|. +|.+.|.+|..|||+.+. +.....++|+..-.+.+|.||| .|.|.+... ++.|.|
T Consensus 2 ~L~V~Vi~a~-~L~~~d~~g~~DPYv~v~---------~~~~~~~kT~~~~~t~~P~Wne---~f~~~v~~~--~~~L~v 66 (120)
T cd04045 2 VLRLHIRKAN-DLKNLEGVGKIDPYVRVL---------VNGIVKGRTVTISNTLNPVWDE---VLYVPVTSP--NQKITL 66 (120)
T ss_pred eEEEEEEeeE-CCCCccCCCCcCCEEEEE---------ECCEEeeceeEECCCcCCccCc---eEEEEecCC--CCEEEE
Confidence 3557888887 488889899999998744 2223345666444467888887 587777665 468999
Q ss_pred EEeccCccccc
Q 043301 232 EFWDLDDVLVN 242 (244)
Q Consensus 232 ~~~~~~~~~~~ 242 (244)
||||+|+.+++
T Consensus 67 ~v~d~~~~~~d 77 (120)
T cd04045 67 EVMDYEKVGKD 77 (120)
T ss_pred EEEECCCCCCC
Confidence 99999987765
No 72
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=98.26 E-value=4.4e-07 Score=72.50 Aligned_cols=75 Identities=9% Similarity=0.064 Sum_probs=53.0
Q ss_pred CCcceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEee-cCCCCChhhhhhhhhhcCCCCcccee
Q 043301 151 NPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTIS-ESYPYSDDTLAQFILRLQNSLRSKNM 229 (244)
Q Consensus 151 ~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (244)
+.|.++|-+|. .+--++ -|-+|||+++. +.. .+++|++... ..+|.||| +|.|.+.++. ..|
T Consensus 2 g~L~v~v~~Ak-~l~~~~-~g~sDPYv~i~---------lg~-~~~kT~v~~~~~~nP~WNe---~F~f~v~~~~--~~l 64 (121)
T cd04016 2 GRLSITVVQAK-LVKNYG-LTRMDPYCRIR---------VGH-AVYETPTAYNGAKNPRWNK---TIQCTLPEGV--DSI 64 (121)
T ss_pred cEEEEEEEEcc-CCCcCC-CCCCCceEEEE---------ECC-EEEEeEEccCCCCCCccCe---EEEEEecCCC--cEE
Confidence 35668899997 444444 68899998843 433 2456773334 46888887 6999987642 569
Q ss_pred EEEEeccCccccc
Q 043301 230 SVEFWDLDDVLVN 242 (244)
Q Consensus 230 ~~~~~~~~~~~~~ 242 (244)
.|||||.|..+++
T Consensus 65 ~~~V~d~d~~~~d 77 (121)
T cd04016 65 YIEIFDERAFTMD 77 (121)
T ss_pred EEEEEeCCCCcCC
Confidence 9999999998765
No 73
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=6.6e-07 Score=85.47 Aligned_cols=82 Identities=17% Similarity=0.211 Sum_probs=66.7
Q ss_pred ccCCcceeeecccccccccCCCCcchhhHHHHhhhhccccccccc--CCCCceeEeecCCCCChhhhhhhhhhcCCC-Cc
Q 043301 149 ERNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSET--GDQGSKVTISESYPYSDDTLAQFILRLQNS-LR 225 (244)
Q Consensus 149 ~~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~ 225 (244)
.-+.|.++|.++. .|-+||..|.+|||++ .-|-|+ .+-+|+..-.+++|.||| +|.|.+..+ ..
T Consensus 165 ~~~~L~V~V~qa~-~Lp~~d~~g~sdpyVK---------~~llPdk~~k~kT~v~r~tlnP~fnE---tf~f~v~~~~l~ 231 (421)
T KOG1028|consen 165 ELNLLTVRVIQAH-DLPAKDRGGTSDPYVK---------VYLLPDKKGKFKTRVHRKTLNPVFNE---TFRFEVPYEELS 231 (421)
T ss_pred cCCEEEEEEEEec-CCCcccCCCCCCCeeE---------EEEcCCCCCcceeeeeecCcCCcccc---ceEeecCHHHhc
Confidence 4667889999997 5899998899999987 555555 455666444578899998 699996666 88
Q ss_pred cceeEEEEeccCcccccC
Q 043301 226 SKNMSVEFWDLDDVLVNV 243 (244)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~ 243 (244)
.+.|.+-|||.||.|||-
T Consensus 232 ~~~L~l~V~~~drfsr~~ 249 (421)
T KOG1028|consen 232 NRVLHLSVYDFDRFSRHD 249 (421)
T ss_pred cCEEEEEEEecCCccccc
Confidence 899999999999999984
No 74
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=98.23 E-value=8.3e-07 Score=68.76 Aligned_cols=75 Identities=16% Similarity=0.127 Sum_probs=54.6
Q ss_pred ceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEEEE
Q 043301 154 DLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVEF 233 (244)
Q Consensus 154 ~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (244)
.++|-+|. +|-+++.+|..|||+++. +....-.+|+..-.+.+|.||| +|.|.+... .++.|.|+|
T Consensus 2 ~v~vi~a~-~L~~~~~~~~~dpyv~v~---------~~~~~~~~T~v~~~~~~P~Wne---~f~~~~~~~-~~~~l~~~v 67 (115)
T cd04040 2 TVDVISAE-NLPSADRNGKSDPFVKFY---------LNGEKVFKTKTIKKTLNPVWNE---SFEVPVPSR-VRAVLKVEV 67 (115)
T ss_pred EEEEEeee-CCCCCCCCCCCCCeEEEE---------ECCCcceeeceecCCCCCcccc---cEEEEeccC-CCCEEEEEE
Confidence 46788886 478888889999997744 2222234566444567788887 699888655 678999999
Q ss_pred eccCccccc
Q 043301 234 WDLDDVLVN 242 (244)
Q Consensus 234 ~~~~~~~~~ 242 (244)
||+|..+++
T Consensus 68 ~d~~~~~~~ 76 (115)
T cd04040 68 YDWDRGGKD 76 (115)
T ss_pred EeCCCCCCC
Confidence 999987654
No 75
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=98.23 E-value=6.7e-07 Score=69.59 Aligned_cols=74 Identities=12% Similarity=0.078 Sum_probs=54.3
Q ss_pred CcceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEE
Q 043301 152 PEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSV 231 (244)
Q Consensus 152 ~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (244)
.+.+.|.+|. +|-++|.++.+|||++++ +.. ...+|+++-.+.+|.||| +|.|.+.. ..+-|.|
T Consensus 2 ~l~v~v~~a~-~L~~~~~~~~~dPyv~v~---------~~~-~~~~T~~~~~t~nP~W~e---~f~~~~~~--~~~~l~~ 65 (119)
T cd08377 2 FLQVKVIRAS-GLAAADIGGKSDPFCVLE---------LVN-ARLQTHTIYKTLNPEWNK---IFTFPIKD--IHDVLEV 65 (119)
T ss_pred EEEEEEEeee-CCCCCCCCCCCCcEEEEE---------ECC-EeeecceecCCcCCccCc---EEEEEecC--cCCEEEE
Confidence 4568889997 488899999999998754 111 124666444567888887 69888753 4578999
Q ss_pred EEeccCcccc
Q 043301 232 EFWDLDDVLV 241 (244)
Q Consensus 232 ~~~~~~~~~~ 241 (244)
+|||||..+.
T Consensus 66 ~v~d~~~~~~ 75 (119)
T cd08377 66 TVYDEDKDKK 75 (119)
T ss_pred EEEECCCCCC
Confidence 9999998654
No 76
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=98.22 E-value=7.6e-07 Score=54.25 Aligned_cols=29 Identities=38% Similarity=1.039 Sum_probs=27.3
Q ss_pred ccccccccCCCCC-cEEeCCCCCccccccc
Q 043301 33 IICDICETSLQGP-AYGCGTCEFSIHKSCA 61 (244)
Q Consensus 33 ~~C~~C~~~i~g~-~Y~C~~C~F~lH~~Ca 61 (244)
+.|++|++.+.|+ +|+|..|+|.+|.+||
T Consensus 1 ~~C~~C~~~~~~~~~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 1 FWCDVCRRKIDGFYFYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCCcCCCEeEEeCCCCCeEcCccC
Confidence 4699999999999 9999999999999997
No 77
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=98.22 E-value=7.6e-07 Score=70.18 Aligned_cols=77 Identities=9% Similarity=0.064 Sum_probs=57.5
Q ss_pred cceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEee-cCCCCChhhhhhhhhhcCCC---Cccce
Q 043301 153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTIS-ESYPYSDDTLAQFILRLQNS---LRSKN 228 (244)
Q Consensus 153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~---~~~~~ 228 (244)
|.++|.+|. +|-.++..|-.|||+. ..+....+++|++... +.+|.||| .|.|.+.+. +....
T Consensus 2 L~V~V~sA~-~L~~~~~~~~~dpYv~---------v~~~~~~~~~T~~~~~~~~~P~Wne---~f~f~v~~~~~~~~~~~ 68 (125)
T cd04051 2 LEITIISAE-DLKNVNLFGKMKVYAV---------VWIDPSHKQSTPVDRDGGTNPTWNE---TLRFPLDERLLQQGRLA 68 (125)
T ss_pred EEEEEEEcc-cCCCCCcccCCceEEE---------EEECCCcccccccccCCCCCCCCCC---EEEEEcChHhcccCccE
Confidence 568888997 4788888888999977 3444444566663333 57888888 699998776 45899
Q ss_pred eEEEEeccCccccc
Q 043301 229 MSVEFWDLDDVLVN 242 (244)
Q Consensus 229 ~~~~~~~~~~~~~~ 242 (244)
|.|||||+++.+.+
T Consensus 69 l~~~v~d~~~~~~~ 82 (125)
T cd04051 69 LTIEVYCERPSLGD 82 (125)
T ss_pred EEEEEEECCCCCCC
Confidence 99999999985544
No 78
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=98.21 E-value=6e-07 Score=74.61 Aligned_cols=58 Identities=14% Similarity=0.133 Sum_probs=38.7
Q ss_pred CCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEEEEeccCccc
Q 043301 169 RNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVEFWDLDDVL 240 (244)
Q Consensus 169 ~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (244)
-.|.+|||++++ +......+|++.-.+.+|.||| +|.|.+.. ....|.|+|||||..+
T Consensus 54 ~~g~sDPYv~V~---------l~~~~~~rT~v~~~~~nP~WnE---~F~~~~~~--~~~~l~~~V~d~d~~~ 111 (158)
T cd04015 54 GKITSDPYATVD---------LAGARVARTRVIENSENPVWNE---SFHIYCAH--YASHVEFTVKDNDVVG 111 (158)
T ss_pred CCCCcCeEEEEE---------ECCeEeeEEEEeCCCCCCccce---EEEEEccC--CCCEEEEEEEeCCCcC
Confidence 456789997743 3333234677433366777777 68887653 3467999999999754
No 79
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=98.21 E-value=3.1e-07 Score=55.86 Aligned_cols=29 Identities=48% Similarity=1.100 Sum_probs=14.2
Q ss_pred ccccccccCCCC-eeEEcCCccceeccccc
Q 043301 84 HRCDACLDECSG-MAYRCHECCYNLHYHCT 112 (244)
Q Consensus 84 ~~Cd~Cg~~~~g-~~Y~C~~Cd~~lH~~Ca 112 (244)
+.|++|++.+.+ +.|.|.+|||++|..||
T Consensus 1 ~~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 1 FRCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp ---TTTS----S--EEE-TTT-----HHHH
T ss_pred CcCCcCCCcCCCCceEECccCCCccChhcC
Confidence 369999999888 99999999999999996
No 80
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.21 E-value=5.1e-07 Score=72.09 Aligned_cols=75 Identities=12% Similarity=0.203 Sum_probs=52.2
Q ss_pred CcceeeecccccccccCC----------CCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcC
Q 043301 152 PEDLTFHDVFSSFTEKDR----------NQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQ 221 (244)
Q Consensus 152 ~~~~~v~~~~~~~~~~~~----------n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 221 (244)
.|.++|.+|.+ |.++|. +|..|||++++ +......+|++.-.+.+|.||| +|.|.+.
T Consensus 5 ~l~V~v~~a~~-L~~~d~~~~~~~~~~~~g~~dpyv~v~---------~~~~~~~kT~~~~~t~~P~Wne---~f~~~v~ 71 (132)
T cd04014 5 TLKIKICEAVD-LKPTDWSTRHAVPKKGSQLLDPYVSID---------VDDTHIGKTSTKPKTNSPVWNE---EFTTEVH 71 (132)
T ss_pred EEEEEEEEecC-CCCCCchhhhcccccCccCcCcEEEEE---------ECCEEEeEEeEcCCCCCCCcce---eEEEEcC
Confidence 35588899974 788885 37899998744 3322223455323367788887 6999986
Q ss_pred CCCccceeEEEEeccCccccc
Q 043301 222 NSLRSKNMSVEFWDLDDVLVN 242 (244)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~ 242 (244)
.++.|.|+|||+|..+.+
T Consensus 72 ---~~~~l~~~v~d~~~~~~~ 89 (132)
T cd04014 72 ---NGRNLELTVFHDAAIGPD 89 (132)
T ss_pred ---CCCEEEEEEEeCCCCCCC
Confidence 458999999999876543
No 81
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=98.20 E-value=1.1e-06 Score=68.04 Aligned_cols=70 Identities=11% Similarity=0.213 Sum_probs=50.6
Q ss_pred eeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCC---ccceeEE
Q 043301 155 LTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSL---RSKNMSV 231 (244)
Q Consensus 155 ~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 231 (244)
+.|-+|.+ |. +|..|||+++. +..+ +++|++.-.+.+|.||| +|.|.+.... .+..|.|
T Consensus 8 V~v~~a~~-L~----~~~~dpyv~v~---------~~~~-~~kT~~~~~t~nP~wne---~f~f~~~~~~~~l~~~~l~i 69 (111)
T cd04011 8 VRVIEARQ-LV----GGNIDPVVKVE---------VGGQ-KKYTSVKKGTNCPFYNE---YFFFNFHESPDELFDKIIKI 69 (111)
T ss_pred EEEEEccc-CC----CCCCCCEEEEE---------ECCE-eeeeeEEeccCCCcccc---EEEEecCCCHHHHhcCeEEE
Confidence 78888875 43 78899998743 4433 45677444466899998 6998875432 4678999
Q ss_pred EEeccCccccc
Q 043301 232 EFWDLDDVLVN 242 (244)
Q Consensus 232 ~~~~~~~~~~~ 242 (244)
+|||+|+.++|
T Consensus 70 ~V~d~~~~~~~ 80 (111)
T cd04011 70 SVYDSRSLRSD 80 (111)
T ss_pred EEEcCcccccC
Confidence 99999987664
No 82
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=98.19 E-value=8.2e-07 Score=70.69 Aligned_cols=70 Identities=21% Similarity=0.335 Sum_probs=51.7
Q ss_pred cceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEEE
Q 043301 153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVE 232 (244)
Q Consensus 153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (244)
|.++|-.|. .|..+|.+|.+|||+++. +.. ...+|+++-.+.+|.||| .|.|.+... ++.|.|+
T Consensus 3 L~V~vi~a~-~L~~~d~~g~~DPyv~v~---------~~~-~~~kT~~v~~t~~P~Wne---~f~f~~~~~--~~~l~i~ 66 (127)
T cd04027 3 ISITVVCAQ-GLIAKDKTGTSDPYVTVQ---------VGK-TKKRTKTIPQNLNPVWNE---KFHFECHNS--SDRIKVR 66 (127)
T ss_pred EEEEEEECc-CCcCCCCCCCcCcEEEEE---------ECC-EeeecceecCCCCCccce---EEEEEecCC--CCEEEEE
Confidence 457788886 488999999999998755 211 235666544578888887 688877543 4689999
Q ss_pred EeccCc
Q 043301 233 FWDLDD 238 (244)
Q Consensus 233 ~~~~~~ 238 (244)
|||||.
T Consensus 67 v~d~d~ 72 (127)
T cd04027 67 VWDEDD 72 (127)
T ss_pred EEECCC
Confidence 999995
No 83
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=6.7e-07 Score=85.41 Aligned_cols=85 Identities=12% Similarity=0.187 Sum_probs=66.4
Q ss_pred ccCCcceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccc-
Q 043301 149 ERNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSK- 227 (244)
Q Consensus 149 ~~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~- 227 (244)
..+.+++.|-+|++ |-.||-+|++|||+++- +...-....+++|...-...||+||| +|+|++.+++.++
T Consensus 296 ~~g~ltv~v~kar~-L~~~~~~~~~d~~Vk~~-----l~~~~~~~~kkkT~~~~~~~npv~ne---sf~F~vp~~~l~~~ 366 (421)
T KOG1028|consen 296 TAGRLTVVVIKARN-LKSMDVGGLSDPYVKVT-----LLDGDKRLSKKKTSVKKKTLNPVFNE---TFVFDVPPEQLAEV 366 (421)
T ss_pred CCCeEEEEEEEecC-CCcccCCCCCCccEEEE-----EecCCceeeeeeeecccCCCCCcccc---cEEEeCCHHHhhee
Confidence 46789999999985 89999999999998833 22222333566666555588899998 6999998886665
Q ss_pred eeEEEEeccCccccc
Q 043301 228 NMSVEFWDLDDVLVN 242 (244)
Q Consensus 228 ~~~~~~~~~~~~~~~ 242 (244)
-|.|+|||+|+..+|
T Consensus 367 ~l~l~V~d~d~~~~~ 381 (421)
T KOG1028|consen 367 SLELTVWDHDTLGSN 381 (421)
T ss_pred EEEEEEEEccccccc
Confidence 688899999999998
No 84
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=98.16 E-value=1.2e-06 Score=68.96 Aligned_cols=77 Identities=13% Similarity=0.108 Sum_probs=56.1
Q ss_pred CcceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEee-cCCCCChhhhhhhhhhcCCCC--ccce
Q 043301 152 PEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTIS-ESYPYSDDTLAQFILRLQNSL--RSKN 228 (244)
Q Consensus 152 ~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~--~~~~ 228 (244)
.|.++|-+|. +|.+++..+..|||+++. +.. ..++|+++.. +.+|.||| .|.|.+.... .++.
T Consensus 2 ~L~V~V~~A~-~L~~~~~~~~~dpyv~v~---------~~~-~~~~T~~~~~~t~nP~Wne---~f~f~v~~~~~~~~~~ 67 (124)
T cd04049 2 TLEVLLISAK-GLQDTDFLGKIDPYVIIQ---------CRT-QERKSKVAKGDGRNPEWNE---KFKFTVEYPGWGGDTK 67 (124)
T ss_pred eEEEEEEecC-CCCCCCCCCCcCceEEEE---------ECC-EeeeeeEcCCCCCCCcccc---eEEEEecCcccCCCCE
Confidence 4568899997 488899888999998854 211 1235553332 57888888 6999988774 4789
Q ss_pred eEEEEeccCccccc
Q 043301 229 MSVEFWDLDDVLVN 242 (244)
Q Consensus 229 ~~~~~~~~~~~~~~ 242 (244)
|.|+|||+|...++
T Consensus 68 l~v~V~d~~~~~~d 81 (124)
T cd04049 68 LILRIMDKDNFSDD 81 (124)
T ss_pred EEEEEEECccCCCC
Confidence 99999999987653
No 85
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=98.11 E-value=1.7e-06 Score=67.65 Aligned_cols=75 Identities=13% Similarity=0.140 Sum_probs=52.9
Q ss_pred cceeeecccccccccC-CCCcchhhHHHHhhhhcccccccc-cCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeE
Q 043301 153 EDLTFHDVFSSFTEKD-RNQLDDITENIESEIAGIKKTLSE-TGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMS 230 (244)
Q Consensus 153 ~~~~v~~~~~~~~~~~-~n~l~d~~~~~~~~~~~~~~~l~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (244)
+.++|.+|.+ |-.++ .+|..|||+.+. +.. ....+|++.-.+.+|.||| .|.|.+. ..+..|.
T Consensus 4 l~v~v~~a~~-L~~~~~~~~~~dpyv~v~---------~~~~~~~~kT~~~~~~~~P~Wne---~~~~~v~--~~~~~l~ 68 (124)
T cd04044 4 LAVTIKSARG-LKGSDIIGGTVDPYVTFS---------ISNRRELARTKVKKDTSNPVWNE---TKYILVN--SLTEPLN 68 (124)
T ss_pred EEEEEEcccC-CCcccccCCCCCCeEEEE---------ECCCCcceEeeeecCCCCCcceE---EEEEEeC--CCCCEEE
Confidence 5577888874 55555 567789997744 332 2345666444577888887 6888877 5678999
Q ss_pred EEEeccCccccc
Q 043301 231 VEFWDLDDVLVN 242 (244)
Q Consensus 231 ~~~~~~~~~~~~ 242 (244)
|+|||+|..+++
T Consensus 69 ~~v~d~~~~~~d 80 (124)
T cd04044 69 LTVYDFNDKRKD 80 (124)
T ss_pred EEEEecCCCCCC
Confidence 999999987543
No 86
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=98.10 E-value=4.4e-07 Score=65.21 Aligned_cols=76 Identities=22% Similarity=0.312 Sum_probs=54.2
Q ss_pred cceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCC--CCceeEeecCCCCChhhhhhhhhhcCCCCccceeE
Q 043301 153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGD--QGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMS 230 (244)
Q Consensus 153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (244)
|.+.|..|.+ |...+.++..|||+++. +..... .+|+..-.+.+|.|+| +|.|.+...+.+. |.
T Consensus 1 L~v~I~~a~~-L~~~~~~~~~~~yv~v~---------~~~~~~~~~~T~~~~~~~~P~w~e---~~~~~~~~~~~~~-l~ 66 (85)
T PF00168_consen 1 LTVTIHSARN-LPSKDSNGKPDPYVRVS---------VNGSESTKYKTKVKKNTSNPVWNE---EFEFPLDDPDLDS-LS 66 (85)
T ss_dssp EEEEEEEEES-SSSSSTTSSBEEEEEEE---------EETTTCEEEEECCBSSBSSEEEEE---EEEEEESHGCGTE-EE
T ss_pred CEEEEEEEEC-CCCcccCCcccccceee---------cceeeeeeeeeeeeeccccceeee---eeeeeeecccccc-eE
Confidence 4578888874 78878888999997744 332222 4455333356666665 7999977777777 99
Q ss_pred EEEeccCccccc
Q 043301 231 VEFWDLDDVLVN 242 (244)
Q Consensus 231 ~~~~~~~~~~~~ 242 (244)
|+|||++...+|
T Consensus 67 ~~V~~~~~~~~~ 78 (85)
T PF00168_consen 67 FEVWDKDSFGKD 78 (85)
T ss_dssp EEEEEETSSSSE
T ss_pred EEEEECCCCCCC
Confidence 999999998754
No 87
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=98.08 E-value=1.7e-06 Score=67.27 Aligned_cols=72 Identities=14% Similarity=0.184 Sum_probs=51.8
Q ss_pred cceeeecccccccccCC------CCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCcc
Q 043301 153 EDLTFHDVFSSFTEKDR------NQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRS 226 (244)
Q Consensus 153 ~~~~v~~~~~~~~~~~~------n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 226 (244)
+.+.|-+|. +|.++|. +|.+|||++++ +.. ...+|++.-.+.+|.||| .|.|.+.. ...
T Consensus 3 l~v~v~~a~-~L~~~d~~~~~~~~g~~dPyv~v~---------~~~-~~~kT~~~~~t~~P~W~e---~f~~~v~~-~~~ 67 (121)
T cd08391 3 LRIHVIEAQ-DLVAKDKFVGGLVKGKSDPYVIVR---------VGA-QTFKSKVIKENLNPKWNE---VYEAVVDE-VPG 67 (121)
T ss_pred EEEEEEEcc-CCcccccccccCCCCCcCCEEEEE---------ECC-EeEEccccCCCCCCcccc---eEEEEeCC-CCC
Confidence 557888997 4788874 47899998854 221 234566444577888888 58877754 356
Q ss_pred ceeEEEEeccCcc
Q 043301 227 KNMSVEFWDLDDV 239 (244)
Q Consensus 227 ~~~~~~~~~~~~~ 239 (244)
+.|.|+|||+|..
T Consensus 68 ~~l~i~v~d~~~~ 80 (121)
T cd08391 68 QELEIELFDEDPD 80 (121)
T ss_pred CEEEEEEEecCCC
Confidence 8999999999976
No 88
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=98.07 E-value=4.3e-07 Score=89.87 Aligned_cols=95 Identities=19% Similarity=0.354 Sum_probs=71.7
Q ss_pred cccccccccccCCCC---CcEEeCCCCCccccccccCCCc---------CCC------CCC--CCcceEeec-Ccccccc
Q 043301 30 DVVIICDICETSLQG---PAYGCGTCEFSIHKSCAELPLK---------IDH------PFH--CHPLTLSKT-NHHRCDA 88 (244)
Q Consensus 30 ~~~~~C~~C~~~i~g---~~Y~C~~C~F~lH~~Ca~~p~~---------i~h------p~H--~H~L~L~~~-~~~~Cd~ 88 (244)
.-+++|+.|+++||| .+|+|++|.+++|++|+.+... ..+ ..+ +|.+..+.+ .+++|++
T Consensus 167 ~Qpt~Cs~C~kFi~gL~kqGyQCqvC~~vvHKkCh~kvv~~C~~~~~~n~e~q~~~~~~~~~~Phrf~~~~~q~ptFc~h 246 (694)
T KOG0694|consen 167 RQPTFCSWCQKFIWGLRKQGYQCQVCWRVVHKKCHVKVVTLCDFLDNLNSEPQGFLFEFTFRNPHRFVKLNRQRPTFCDH 246 (694)
T ss_pred cCcchhhhhhhheeccCCCceEEeeeeehHhhhhHHHHHHhccCcCccCcCCccccccccccCCCcchhhhccCccHHHh
Confidence 347899999999998 3899999999999999985311 000 222 354444444 8999999
Q ss_pred cccCCCCe---eEEcCCccceeccccccCcCccccCccccC
Q 043301 89 CLDECSGM---AYRCHECCYNLHYHCTALKPSINFKELKCV 126 (244)
Q Consensus 89 Cg~~~~g~---~Y~C~~Cd~~lH~~Ca~~p~~i~~~~~~h~ 126 (244)
||+.+.+. ..+|..|+.++|.+|+...... +++...
T Consensus 247 CGs~L~r~~qqGlkCs~Cg~n~H~~c~~~va~~--CG~s~t 285 (694)
T KOG0694|consen 247 CGSVLYRLRQQGLKCSTCGRNVHNRCVENLAPN--CGGSRT 285 (694)
T ss_pred cchhhhhhcccCeeehhhhccccHHHHHhcccC--CCCchh
Confidence 99987665 5899999999999999888665 665444
No 89
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=98.07 E-value=1.4e-06 Score=68.40 Aligned_cols=69 Identities=14% Similarity=0.098 Sum_probs=45.7
Q ss_pred cccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEEEEeccCc
Q 043301 163 SFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVEFWDLDD 238 (244)
Q Consensus 163 ~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (244)
+|.++|..|.+|||+++...-... -......+|..+-.+.+|.||| +|.|.+..+ ....|.+||||||.
T Consensus 11 ~L~~~d~~g~~DPyv~v~~~~~~~---~~~~~~~kT~vi~~t~nP~wne---~f~f~~~~~-~~~~l~~~V~d~d~ 79 (120)
T cd04048 11 NLLDKDVLSKSDPFVVVYVKTGGS---GQWVEIGRTEVIKNNLNPDFVT---TFTVDYYFE-EVQKLRFEVYDVDS 79 (120)
T ss_pred CCCCCCCCCCCCcEEEEEEEcCCC---CceEEeccEeEeCCCCCCCceE---EEEEEEEeE-eeeEEEEEEEEecC
Confidence 478889999999998744111000 0011246777444577888887 698886543 44579999999996
No 90
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=98.04 E-value=2.7e-06 Score=69.34 Aligned_cols=71 Identities=13% Similarity=0.027 Sum_probs=50.8
Q ss_pred ceeeecccccccccCCCCcchhhHHHHhhhhccccccccc------------CCCCceeEeecCCCCC-hhhhhhhhhhc
Q 043301 154 DLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSET------------GDQGSKVTISESYPYS-DDTLAQFILRL 220 (244)
Q Consensus 154 ~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~------------~~~~~~~~i~~~~~~~-~~~~~~~~~~~ 220 (244)
.+++-.|.+ | ++|--|..|||+++. +.+. ..++|+++..+.+|.| || +|.|.+
T Consensus 4 ~~~~~~A~~-L-~~~~fg~~DPyvki~---------~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE---~f~f~v 69 (137)
T cd08691 4 SLSGLQARN-L-KKGMFFNPDPYVKIS---------IQPGKRHIFPALPHHGQECRTSIVENTINPVWHRE---QFVFVG 69 (137)
T ss_pred EEEEEEeCC-C-CCccCCCCCceEEEE---------EECCCcccccccccccceeeeeeEcCCCCCceEce---EEEEEc
Confidence 467778864 5 477778999998744 3332 2467775555778888 77 699988
Q ss_pred CCCCccceeEEEEeccCcccc
Q 043301 221 QNSLRSKNMSVEFWDLDDVLV 241 (244)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~ 241 (244)
.++ ..|.|||||++..++
T Consensus 70 ~~~---~~L~v~V~D~~~~~~ 87 (137)
T cd08691 70 LPT---DVLEIEVKDKFAKSR 87 (137)
T ss_pred CCC---CEEEEEEEecCCCCC
Confidence 654 479999999986544
No 91
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=98.03 E-value=3e-06 Score=65.62 Aligned_cols=73 Identities=12% Similarity=0.032 Sum_probs=51.0
Q ss_pred cceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCc-cceeEE
Q 043301 153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLR-SKNMSV 231 (244)
Q Consensus 153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 231 (244)
|.++|.+|.+ |..+ |.+|||+.++ +......+|++.-. .+|.||| +|.|.+.+++. .++|.|
T Consensus 2 L~v~vi~a~~-l~~~---~~~dpyv~v~---------~~~~~~~kT~~~~~-~~P~Wne---~f~f~v~~~~~~~~~l~i 64 (117)
T cd08383 2 LRLRILEAKN-LPSK---GTRDPYCTVS---------LDQVEVARTKTVEK-LNPFWGE---EFVFDDPPPDVTFFTLSF 64 (117)
T ss_pred eEEEEEEecC-CCcC---CCCCceEEEE---------ECCEEeEecceEEC-CCCcccc---eEEEecCCccccEEEEEE
Confidence 4577888874 5554 7899998743 33333346664444 7888887 69999988764 588999
Q ss_pred EEeccCccccc
Q 043301 232 EFWDLDDVLVN 242 (244)
Q Consensus 232 ~~~~~~~~~~~ 242 (244)
+|||.+..+.+
T Consensus 65 ~v~d~~~~~~~ 75 (117)
T cd08383 65 YNKDKRSKDRD 75 (117)
T ss_pred EEEecccCCCe
Confidence 99998865443
No 92
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=98.02 E-value=3.3e-06 Score=67.20 Aligned_cols=73 Identities=10% Similarity=0.215 Sum_probs=51.1
Q ss_pred cceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEEE
Q 043301 153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVE 232 (244)
Q Consensus 153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (244)
|.+++..|. +.+.+-.+..|||+.+. +......+|++.-.+.+|.||| .|.|.+.+ .+.|.|+
T Consensus 4 L~V~i~~a~--l~~~~~~~~~dPyv~v~---------~~~~~~~kT~v~~~t~~P~Wne---~f~~~~~~---~~~l~~~ 66 (125)
T cd04021 4 LQITVESAK--LKSNSKSFKPDPYVEVT---------VDGQPPKKTEVSKKTSNPKWNE---HFTVLVTP---QSTLEFK 66 (125)
T ss_pred EEEEEEeeE--CCCCCcCCCCCeEEEEE---------ECCcccEEeeeeCCCCCCcccc---EEEEEeCC---CCEEEEE
Confidence 457778774 56666677899998744 2222245666444567888887 68888764 4689999
Q ss_pred EeccCccccc
Q 043301 233 FWDLDDVLVN 242 (244)
Q Consensus 233 ~~~~~~~~~~ 242 (244)
|||+|..+.+
T Consensus 67 V~d~~~~~~~ 76 (125)
T cd04021 67 VWSHHTLKAD 76 (125)
T ss_pred EEeCCCCCCC
Confidence 9999987654
No 93
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=98.02 E-value=3.6e-06 Score=51.24 Aligned_cols=29 Identities=41% Similarity=1.189 Sum_probs=27.1
Q ss_pred ccccccccCCCCe-eEEcCCccceeccccc
Q 043301 84 HRCDACLDECSGM-AYRCHECCYNLHYHCT 112 (244)
Q Consensus 84 ~~Cd~Cg~~~~g~-~Y~C~~Cd~~lH~~Ca 112 (244)
..|++|++.+.|+ +|+|..|+|.+|.+||
T Consensus 1 ~~C~~C~~~~~~~~~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 1 FWCDVCRRKIDGFYFYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCCcCCCEeEEeCCCCCeEcCccC
Confidence 3699999999999 9999999999999997
No 94
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=98.00 E-value=3.3e-06 Score=66.93 Aligned_cols=68 Identities=16% Similarity=0.242 Sum_probs=49.2
Q ss_pred cceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEEE
Q 043301 153 EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVE 232 (244)
Q Consensus 153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (244)
|.+.|-+|.+ |.++ .+|||+++. +.. ...+|+++-.+.+|.||| +|.|.+.. ..+..|.++
T Consensus 2 L~V~Vi~a~~-L~~~----~~Dpyv~v~---------l~~-~~~kT~v~~~t~nP~Wne---~F~f~~~~-~~~~~L~~~ 62 (121)
T cd08378 2 LYVRVVKARG-LPAN----SNDPVVEVK---------LGN-YKGSTKAIERTSNPEWNQ---VFAFSKDR-LQGSTLEVS 62 (121)
T ss_pred EEEEEEEecC-CCcc----cCCCEEEEE---------ECC-ccccccccCCCCCCccce---EEEEEcCC-CcCCEEEEE
Confidence 4578888874 6776 689998744 322 456777444477888888 69998643 267889999
Q ss_pred EeccCcc
Q 043301 233 FWDLDDV 239 (244)
Q Consensus 233 ~~~~~~~ 239 (244)
|||+|..
T Consensus 63 v~d~d~~ 69 (121)
T cd08378 63 VWDKDKA 69 (121)
T ss_pred EEeCCCC
Confidence 9999975
No 95
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=97.94 E-value=4.2e-06 Score=69.80 Aligned_cols=76 Identities=11% Similarity=0.090 Sum_probs=52.0
Q ss_pred ceeeecccccccccCCCCcchhhHHHHhhhhccccccc--ccCCCCceeEeecCCCCChhhhhhhhhhcCCCC-------
Q 043301 154 DLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLS--ETGDQGSKVTISESYPYSDDTLAQFILRLQNSL------- 224 (244)
Q Consensus 154 ~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~------- 224 (244)
.+..+.++. +.+.+.+|-+|||+++. ..+. ...+.+|++.-.+++|.||| +|+|.+...+
T Consensus 7 ~i~~~~~~~-l~~~~~~~~~DpYVk~~-------l~~p~~~~~k~KT~v~k~TlnPvfNE---~f~f~I~~~~~~~~R~l 75 (155)
T cd08690 7 TIVRCIGIP-LPSGWNPKDLDTYVKFE-------FPYPNEEPQSGKTSTIKDTNSPEYNE---SFKLNINRKHRSFQRVF 75 (155)
T ss_pred EEEEeeccc-cCCCcCCCCCCeEEEEE-------EecCCCCCceeecCcccCCCCCcccc---eEEEEeccccchhhhhc
Confidence 355555553 78888899999998843 1112 22466777444578888887 6999985553
Q ss_pred ccceeEEEEeccCccc
Q 043301 225 RSKNMSVEFWDLDDVL 240 (244)
Q Consensus 225 ~~~~~~~~~~~~~~~~ 240 (244)
+.+-|.+||||.|..+
T Consensus 76 ~~~~L~~~V~d~~~f~ 91 (155)
T cd08690 76 KRHGLKFEVYHKGGFL 91 (155)
T ss_pred cCCcEEEEEEeCCCcc
Confidence 2455999999999753
No 96
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=4.2e-07 Score=89.42 Aligned_cols=151 Identities=20% Similarity=0.288 Sum_probs=96.3
Q ss_pred CCcceEeec-CcccccccccCCCCe---eEEcCCccceeccccccCcCcc-----ccCccccCCcCccccccccCCCCcE
Q 043301 73 CHPLTLSKT-NHHRCDACLDECSGM---AYRCHECCYNLHYHCTALKPSI-----NFKELKCVLHEVMQSLLEKQPQDVE 143 (244)
Q Consensus 73 ~H~L~L~~~-~~~~Cd~Cg~~~~g~---~Y~C~~Cd~~lH~~Ca~~p~~i-----~~~~~~h~~H~h~l~L~~~~p~~~~ 143 (244)
+|-|...+. .+++|-.|...+.|. +++|..|...+|-.|..+...= .-...+|.+-.-..+|.-.-..+..
T Consensus 172 phnf~~~t~~tpt~cyecegllwglarqglrctqc~vk~hdkc~ell~adclqraaeks~khg~~drtq~lv~~irdrmk 251 (1283)
T KOG1011|consen 172 PHNFATTTFQTPTFCYECEGLLWGLARQGLRCTQCQVKVHDKCRELLSADCLQRAAEKSTKHGEADRTQSLVNVIRDRMK 251 (1283)
T ss_pred CCceeeeeccCCchhhhhhhHHHHHhhcccchhhccccHHHHHHHHhhhHHHHHHHHhhccccchhhHHHHHHHHHHHHH
Confidence 677777666 899999999987765 5999999999999997654210 0012244433222222211101111
Q ss_pred EE------------EEe-----------------------c-cCCcceeeecccccccccCCCCcchhhHHHHhhhhccc
Q 043301 144 LR------------TIQ-----------------------E-RNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIK 187 (244)
Q Consensus 144 ~~------------~~~-----------------------~-~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~ 187 (244)
|+ .+. . .-.|+++|--|- -|++.|..|-||||+..+
T Consensus 252 i~e~nkpevfq~ir~vf~v~~~~~~e~lktvk~silegsskwsakitltvlcaq-gl~akdktg~sdpyvt~q------- 323 (1283)
T KOG1011|consen 252 IQEQNKPEVFQMIRTVFDVDENIQKETLKTVKASILEGSSKWSAKITLTVLCAQ-GLIAKDKTGKSDPYVTAQ------- 323 (1283)
T ss_pred HHhhcChHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccccccceeeEEeeeecc-cceecccCCCCCCcEEEe-------
Confidence 11 000 0 124556666665 489999999999998754
Q ss_pred ccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEEEEeccCcc
Q 043301 188 KTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVEFWDLDDV 239 (244)
Q Consensus 188 ~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (244)
-.+.+..|+++.-++||+||| .|-|.-.++ .-|+-|.|||=|..
T Consensus 324 ---v~ktkrrtrti~~~lnpvw~e---kfhfechns--tdrikvrvwded~d 367 (1283)
T KOG1011|consen 324 ---VGKTKRRTRTIHQELNPVWNE---KFHFECHNS--TDRIKVRVWDEDND 367 (1283)
T ss_pred ---ecccchhhHhhhhccchhhhh---heeeeecCC--CceeEEEEecCccc
Confidence 113456677666688899998 588776654 56899999998753
No 97
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=97.91 E-value=6.4e-06 Score=65.21 Aligned_cols=60 Identities=15% Similarity=0.140 Sum_probs=44.8
Q ss_pred CCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCC-CccceeEEEEeccCcccc
Q 043301 169 RNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNS-LRSKNMSVEFWDLDDVLV 241 (244)
Q Consensus 169 ~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 241 (244)
..|.+|||+++. +.. .+.+|+++-.+.+|.||| .|.|.+... +..+.|.|+|||||+.++
T Consensus 11 ~~g~~Dpyv~v~---------~~~-~~~kT~v~~~~~nP~Wne---~f~f~~~~~~~~~~~l~~~v~d~~~~~~ 71 (127)
T cd08373 11 LKGKGDRIAKVT---------FRG-VKKKTRVLENELNPVWNE---TFEWPLAGSPDPDESLEIVVKDYEKVGR 71 (127)
T ss_pred cCCCCCCEEEEE---------ECC-EeeecceeCCCcCCcccc---eEEEEeCCCcCCCCEEEEEEEECCCCCC
Confidence 678899998754 221 235677444577888887 699999765 678999999999998764
No 98
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=97.86 E-value=9.2e-06 Score=63.74 Aligned_cols=73 Identities=11% Similarity=0.129 Sum_probs=51.1
Q ss_pred cceeeecccccccccC--CCCcchhhHHHHhhhhcccccccc-----cCCCCceeEeecC-CCCChhhhhhhhhhcCCCC
Q 043301 153 EDLTFHDVFSSFTEKD--RNQLDDITENIESEIAGIKKTLSE-----TGDQGSKVTISES-YPYSDDTLAQFILRLQNSL 224 (244)
Q Consensus 153 ~~~~v~~~~~~~~~~~--~n~l~d~~~~~~~~~~~~~~~l~~-----~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~~~ 224 (244)
+.++|-.|.+ |-+++ .++..|||+++. +.. ....+|+....++ +|.||| +|.|.+...+
T Consensus 4 l~v~vi~a~~-L~~~~~~~~~~~dpyv~v~---------l~~~~~~~~~~~kT~~~~~~~~~P~w~e---~f~f~~~~~~ 70 (128)
T cd00275 4 LTIKIISGQQ-LPKPKGDKGSIVDPYVEVE---------IHGLPADDSAKFKTKVVKNNGFNPVWNE---TFEFDVTVPE 70 (128)
T ss_pred EEEEEEeeec-CCCCCCCCCCccCCEEEEE---------EEeCCCCCCCcEeeeeecCCCcCCccCC---cEEEEEeCCC
Confidence 4578888874 77787 678899998844 221 2334555322344 888887 6999988555
Q ss_pred ccceeEEEEeccCcc
Q 043301 225 RSKNMSVEFWDLDDV 239 (244)
Q Consensus 225 ~~~~~~~~~~~~~~~ 239 (244)
. ..|.++|||+++.
T Consensus 71 ~-~~l~~~V~d~~~~ 84 (128)
T cd00275 71 L-AFLRFVVYDEDSG 84 (128)
T ss_pred e-EEEEEEEEeCCCC
Confidence 3 5799999999986
No 99
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=97.84 E-value=8.8e-06 Score=68.39 Aligned_cols=74 Identities=11% Similarity=0.117 Sum_probs=51.9
Q ss_pred CcceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEE
Q 043301 152 PEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSV 231 (244)
Q Consensus 152 ~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (244)
-|.+.|.-+.+ |...|--+-||||+-+ .+.. .+.+|+++-.+.||.||| .|+|.++. -..-|-|
T Consensus 7 LL~v~v~~g~~-L~~rD~~~sSDPyVVl---------~lg~-q~lkT~~v~~n~NPeWNe---~ltf~v~d--~~~~lkv 70 (168)
T KOG1030|consen 7 LLRVRVKRGKN-LAIRDFLGSSDPYVVL---------ELGN-QKLKTRVVYKNLNPEWNE---ELTFTVKD--PNTPLKV 70 (168)
T ss_pred EEEEEEEeecC-eeeeccccCCCCeEEE---------EECC-eeeeeeeecCCCCCcccc---eEEEEecC--CCceEEE
Confidence 34577888864 7777765779999663 3332 345566455577777776 79988764 4566889
Q ss_pred EEeccCcccc
Q 043301 232 EFWDLDDVLV 241 (244)
Q Consensus 232 ~~~~~~~~~~ 241 (244)
.|||+|+.|+
T Consensus 71 ~VyD~D~fs~ 80 (168)
T KOG1030|consen 71 TVYDKDTFSS 80 (168)
T ss_pred EEEeCCCCCc
Confidence 9999999886
No 100
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=97.83 E-value=6.4e-06 Score=64.03 Aligned_cols=58 Identities=14% Similarity=0.066 Sum_probs=40.6
Q ss_pred CCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEEEEeccCcc
Q 043301 169 RNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVEFWDLDDV 239 (244)
Q Consensus 169 ~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (244)
.+|.+|||++++ +......+|++...+.+|.||| .|.|.+... .++.|.|+|||||..
T Consensus 9 ~~G~~dPYv~v~---------v~~~~~~kT~v~~~t~nP~Wne---~f~f~v~~~-~~~~l~i~v~d~~~~ 66 (111)
T cd04052 9 KTGLLSPYAELY---------LNGKLVYTTRVKKKTNNPSWNA---STEFLVTDR-RKSRVTVVVKDDRDR 66 (111)
T ss_pred cCCCCCceEEEE---------ECCEEEEEEeeeccCCCCccCC---ceEEEecCc-CCCEEEEEEEECCCC
Confidence 678899998744 3322234556444577888888 588877533 567799999999975
No 101
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=97.82 E-value=1.4e-05 Score=52.75 Aligned_cols=39 Identities=31% Similarity=0.742 Sum_probs=32.5
Q ss_pred cccccccCCCCCcEEeCCC-CCccccccccCCCcCCCCCCCCcce
Q 043301 34 ICDICETSLQGPAYGCGTC-EFSIHKSCAELPLKIDHPFHCHPLT 77 (244)
Q Consensus 34 ~C~~C~~~i~g~~Y~C~~C-~F~lH~~Ca~~p~~i~hp~H~H~L~ 77 (244)
.|++|+.+|.|..|+|.+| +|+|+..|.... .| ..|+|.
T Consensus 2 ~Cd~C~~~i~G~ry~C~~C~d~dLC~~C~~~~---~H--~~H~f~ 41 (43)
T cd02340 2 ICDGCQGPIVGVRYKCLVCPDYDLCESCEAKG---VH--PEHAML 41 (43)
T ss_pred CCCCCCCcCcCCeEECCCCCCccchHHhhCcC---CC--CCCCEE
Confidence 6999999999999999999 799999998754 33 256654
No 102
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=97.60 E-value=7.7e-05 Score=50.55 Aligned_cols=45 Identities=24% Similarity=0.439 Sum_probs=33.9
Q ss_pred CcceEeec-CcccccccccCCC---CeeEEcCCccceeccccccCcCcc
Q 043301 74 HPLTLSKT-NHHRCDACLDECS---GMAYRCHECCYNLHYHCTALKPSI 118 (244)
Q Consensus 74 H~L~L~~~-~~~~Cd~Cg~~~~---g~~Y~C~~Cd~~lH~~Ca~~p~~i 118 (244)
|.|...+. .++.|++|++.+. ..+|+|..|++.+|.+|+...+..
T Consensus 1 H~f~~~~~~~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~~~~~ 49 (53)
T PF00130_consen 1 HHFVPTTFSKPTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSKVPPS 49 (53)
T ss_dssp -EEEEEESSSTEB-TTSSSBECSSSSCEEEETTTT-EEETTGGCTSSSB
T ss_pred CeEEEccCCCCCCCcccCcccCCCCCCeEEECCCCChHhhhhhhhcCCC
Confidence 44555554 7899999999873 347999999999999999888654
No 103
>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.
Probab=97.60 E-value=4.5e-05 Score=50.82 Aligned_cols=30 Identities=27% Similarity=0.861 Sum_probs=27.4
Q ss_pred cccccc-cCCCCCcEEeCCC-CCccccccccC
Q 043301 34 ICDICE-TSLQGPAYGCGTC-EFSIHKSCAEL 63 (244)
Q Consensus 34 ~C~~C~-~~i~g~~Y~C~~C-~F~lH~~Ca~~ 63 (244)
.|++|+ .+|.|..|+|.+| +|+|+..|...
T Consensus 2 ~Cd~C~~~~i~G~RykC~~C~dyDLC~~C~~~ 33 (45)
T cd02339 2 ICDTCRKQGIIGIRWKCAECPNYDLCTTCYHG 33 (45)
T ss_pred CCCCCCCCCcccCeEECCCCCCccchHHHhCC
Confidence 699999 6889999999999 79999999873
No 104
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=97.58 E-value=5.8e-05 Score=51.19 Aligned_cols=36 Identities=28% Similarity=0.643 Sum_probs=29.5
Q ss_pred cccccccccccCCCC---CcEEeCCCCCccccccccCCC
Q 043301 30 DVVIICDICETSLQG---PAYGCGTCEFSIHKSCAELPL 65 (244)
Q Consensus 30 ~~~~~C~~C~~~i~g---~~Y~C~~C~F~lH~~Ca~~p~ 65 (244)
..+.+|+.|++.|+| .+|+|+.|++.+|++|+....
T Consensus 9 ~~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~~~ 47 (53)
T PF00130_consen 9 SKPTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSKVP 47 (53)
T ss_dssp SSTEB-TTSSSBECSSSSCEEEETTTT-EEETTGGCTSS
T ss_pred CCCCCCcccCcccCCCCCCeEEECCCCChHhhhhhhhcC
Confidence 567899999999965 489999999999999998643
No 105
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=97.48 E-value=8.7e-05 Score=49.36 Aligned_cols=32 Identities=34% Similarity=0.708 Sum_probs=29.3
Q ss_pred cccccccCCCCCcEEeCCCC-CccccccccCCC
Q 043301 34 ICDICETSLQGPAYGCGTCE-FSIHKSCAELPL 65 (244)
Q Consensus 34 ~C~~C~~~i~g~~Y~C~~C~-F~lH~~Ca~~p~ 65 (244)
.|++|+.+|.|..|+|.+|. |+|+..|...+.
T Consensus 2 ~C~~C~~~i~g~r~~C~~C~d~dLC~~Cf~~~~ 34 (46)
T cd02249 2 SCDGCLKPIVGVRYHCLVCEDFDLCSSCYAKGK 34 (46)
T ss_pred CCcCCCCCCcCCEEECCCCCCCcCHHHHHCcCc
Confidence 69999999999999999995 999999998655
No 106
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=97.47 E-value=5.5e-05 Score=61.14 Aligned_cols=67 Identities=10% Similarity=0.143 Sum_probs=42.9
Q ss_pred CcceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCcee-EeecCCCCChhhhhhhhhhcCCCCccceeE
Q 043301 152 PEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKV-TISESYPYSDDTLAQFILRLQNSLRSKNMS 230 (244)
Q Consensus 152 ~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (244)
.|.+.|.+|+. |-.++ ..|||+.++ + +++++++ ++..++|.||| .|.|.+...+.+ |.
T Consensus 3 ~L~V~Vv~Ar~-L~~~~---~~dPYV~Ik---------~---g~~k~kT~v~~~~nP~WnE---~F~F~~~~~~~~--L~ 61 (127)
T cd08394 3 LLCVLVKKAKL-DGAPD---KFNTYVTLK---------V---QNVKSTTIAVRGSQPCWEQ---DFMFEINRLDLG--LV 61 (127)
T ss_pred eEEEEEEEeeC-CCCCC---CCCCeEEEE---------E---CCEEeEeeECCCCCCceee---EEEEEEcCCCCE--EE
Confidence 45688999985 53323 348998754 2 2233332 33455677776 799999654444 99
Q ss_pred EEEeccCcc
Q 043301 231 VEFWDLDDV 239 (244)
Q Consensus 231 ~~~~~~~~~ 239 (244)
|||||=|..
T Consensus 62 v~V~dkd~~ 70 (127)
T cd08394 62 IELWNKGLI 70 (127)
T ss_pred EEEEeCCCc
Confidence 999996644
No 107
>cd02338 ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.
Probab=97.46 E-value=9.2e-05 Score=50.09 Aligned_cols=43 Identities=26% Similarity=0.685 Sum_probs=34.4
Q ss_pred cccccc-cCCCCCcEEeCCC-CCccccccccCCCcCCCCCC--CCcceE
Q 043301 34 ICDICE-TSLQGPAYGCGTC-EFSIHKSCAELPLKIDHPFH--CHPLTL 78 (244)
Q Consensus 34 ~C~~C~-~~i~g~~Y~C~~C-~F~lH~~Ca~~p~~i~hp~H--~H~L~L 78 (244)
.|+.|+ .+|.|.+|+|.+| +|+|+..|....... ..| .|++++
T Consensus 2 ~C~~C~~~~i~g~R~~C~~C~d~dlC~~Cf~~~~~~--~~H~~~H~~~~ 48 (49)
T cd02338 2 SCDGCGKSNFTGRRYKCLICYDYDLCADCYDSGVTT--ERHLFDHPMQC 48 (49)
T ss_pred CCCCCcCCCcEEeeEEeCCCCCCccchhHHhCCCcC--CCCCCCCCEEE
Confidence 699999 7899999999999 799999998865432 234 577654
No 108
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=97.40 E-value=0.0001 Score=48.56 Aligned_cols=31 Identities=35% Similarity=0.819 Sum_probs=28.6
Q ss_pred cccccccCCCCeeEEcCCc-cceeccccccCc
Q 043301 85 RCDACLDECSGMAYRCHEC-CYNLHYHCTALK 115 (244)
Q Consensus 85 ~Cd~Cg~~~~g~~Y~C~~C-d~~lH~~Ca~~p 115 (244)
.|+.|++.+.|.+|+|..| +|+++..|....
T Consensus 2 ~Cd~C~~~i~G~ry~C~~C~d~dLC~~C~~~~ 33 (43)
T cd02340 2 ICDGCQGPIVGVRYKCLVCPDYDLCESCEAKG 33 (43)
T ss_pred CCCCCCCcCcCCeEECCCCCCccchHHhhCcC
Confidence 6999999999999999999 899999998754
No 109
>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=97.37 E-value=0.00012 Score=49.49 Aligned_cols=32 Identities=28% Similarity=0.813 Sum_probs=29.0
Q ss_pred ccccccc-CCCCCcEEeCCCC---CccccccccCCC
Q 043301 34 ICDICET-SLQGPAYGCGTCE---FSIHKSCAELPL 65 (244)
Q Consensus 34 ~C~~C~~-~i~g~~Y~C~~C~---F~lH~~Ca~~p~ 65 (244)
.|++|+. +|.|.+|+|.+|. |+|+..|.....
T Consensus 2 ~Cd~C~~~pI~G~R~~C~~C~~~d~DlC~~C~~~~~ 37 (48)
T cd02341 2 KCDSCGIEPIPGTRYHCSECDDGDFDLCQDCVVKGE 37 (48)
T ss_pred CCCCCCCCccccceEECCCCCCCCCccCHHHHhCcC
Confidence 6999998 8999999999997 999999988654
No 110
>cd02334 ZZ_dystrophin Zinc finger, ZZ type. Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan.
Probab=97.28 E-value=0.00019 Score=48.63 Aligned_cols=42 Identities=29% Similarity=0.696 Sum_probs=33.0
Q ss_pred ccccccc-CCCCCcEEeCCC-CCccccccccCCCcCCCCCC--CCcce
Q 043301 34 ICDICET-SLQGPAYGCGTC-EFSIHKSCAELPLKIDHPFH--CHPLT 77 (244)
Q Consensus 34 ~C~~C~~-~i~g~~Y~C~~C-~F~lH~~Ca~~p~~i~hp~H--~H~L~ 77 (244)
.|+.|+. +|.|..|+|.+| +|+|+..|....... ..| .||++
T Consensus 2 ~Cd~C~~~pi~g~RykC~~C~d~DLC~~Cf~~g~~~--~~H~~~Hp~~ 47 (49)
T cd02334 2 KCNICKEFPITGFRYRCLKCFNYDLCQSCFFSGRTS--KSHKNSHPMK 47 (49)
T ss_pred CCCCCCCCCceeeeEECCCCCCcCchHHHHhCCCcC--CCCCCCCCee
Confidence 6999995 799999999999 799999998754433 234 57664
No 111
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=97.28 E-value=0.00017 Score=75.22 Aligned_cols=79 Identities=16% Similarity=0.172 Sum_probs=66.9
Q ss_pred cCCcceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCcccee
Q 043301 150 RNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNM 229 (244)
Q Consensus 150 ~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (244)
.+.+++.+.++- +|+..|.||++||++. .-|+.++--+|++..+.+||.||| .|+..+.+.++| -|
T Consensus 1039 sG~l~I~~~~~~-nl~~~d~ng~sDpfv~---------~~ln~k~vyktkv~KktlNPvwNE---e~~i~v~~r~~D-~~ 1104 (1227)
T COG5038 1039 SGYLTIMLRSGE-NLPSSDENGYSDPFVK---------LFLNEKSVYKTKVVKKTLNPVWNE---EFTIEVLNRVKD-VL 1104 (1227)
T ss_pred cCcEEEEEeccC-CCcccccCCCCCceEE---------EEecceecccccchhccCCCCccc---cceEeeeccccc-eE
Confidence 566789999996 5899999999999977 557777788888777899999999 598888777666 58
Q ss_pred EEEEeccCccccc
Q 043301 230 SVEFWDLDDVLVN 242 (244)
Q Consensus 230 ~~~~~~~~~~~~~ 242 (244)
-|-|.|||++.+|
T Consensus 1105 ~i~v~Dwd~~~kn 1117 (1227)
T COG5038 1105 TINVNDWDSGEKN 1117 (1227)
T ss_pred EEEEeecccCCCc
Confidence 8999999999887
No 112
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=97.26 E-value=0.00019 Score=79.35 Aligned_cols=78 Identities=10% Similarity=0.070 Sum_probs=56.9
Q ss_pred CcceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEE
Q 043301 152 PEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSV 231 (244)
Q Consensus 152 ~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (244)
.+.++|..+.+ +. +--|-+|||+. .++....+.+||++-.+.||.||| .|+|.++...++-.|.|
T Consensus 1981 ~L~V~V~~a~n-l~--~~~~~sdPyv~---------l~~g~~~~~kTkvvk~~~nP~Wne---~f~~~~~~p~~~~~l~i 2045 (2102)
T PLN03200 1981 SLTVTIKRGNN-LK--QSMGNTNAFCK---------LTLGNGPPRQTKVVSHSSSPEWKE---GFTWAFDSPPKGQKLHI 2045 (2102)
T ss_pred ceEEEEeeccc-cc--cccCCCCCeEE---------EEECCCCcccccccCCCCCCCccc---ceeeeecCCCCCCceEE
Confidence 44566777754 43 22355899977 445545577888666688888888 79988888777788999
Q ss_pred EEeccCcccccCC
Q 043301 232 EFWDLDDVLVNVM 244 (244)
Q Consensus 232 ~~~~~~~~~~~~~ 244 (244)
||||.|..+.+-|
T Consensus 2046 ev~d~d~f~kd~~ 2058 (2102)
T PLN03200 2046 SCKSKNTFGKSSL 2058 (2102)
T ss_pred EEEecCccCCCCC
Confidence 9999998876644
No 113
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=97.25 E-value=0.00019 Score=58.46 Aligned_cols=75 Identities=12% Similarity=0.171 Sum_probs=54.7
Q ss_pred eeeecccccccc--cCCCC--cchhhHHHHhhhhcccccccc--cCCCCceeEeecCC--CCChhhhhhhhhhcCC----
Q 043301 155 LTFHDVFSSFTE--KDRNQ--LDDITENIESEIAGIKKTLSE--TGDQGSKVTISESY--PYSDDTLAQFILRLQN---- 222 (244)
Q Consensus 155 ~~v~~~~~~~~~--~~~n~--l~d~~~~~~~~~~~~~~~l~~--~~~~~~~~~i~~~~--~~~~~~~~~~~~~~~~---- 222 (244)
|.|=++.+ +.. ++.+| .+|||++ ..|.+ ..+|+|.+--++++ |.+|+ +|+|.+.-
T Consensus 4 ViIw~~~~-v~~~~~~~~g~~~sD~yVK---------~~L~~~~~~kqkTDVHyrslnG~~~FNw---RfvF~~~~~~~~ 70 (133)
T cd08374 4 VIVWNTRD-VLNDDTNITGEKMSDIYVK---------GWLDGLEEDKQKTDVHYRSLDGEGNFNW---RFVFPFDYLPAE 70 (133)
T ss_pred EEEEECcC-CcccccccCCccccCeEEE---------EEEccCcccccccceEEecCCCCcEEeE---EEEEeeecCCcc
Confidence 55666653 333 33466 4999977 54554 57889987777888 88888 79988665
Q ss_pred -----------------C-CccceeEEEEeccCccccc
Q 043301 223 -----------------S-LRSKNMSVEFWDLDDVLVN 242 (244)
Q Consensus 223 -----------------~-~~~~~~~~~~~~~~~~~~~ 242 (244)
+ ....+|.|.|||-|+.|+|
T Consensus 71 ~~~~~~~~~~~~~~~~~e~~~~~~L~lqvwD~D~~s~d 108 (133)
T cd08374 71 KKIVVIKKEHFWSLDETEYKIPPKLTLQVWDNDKFSPD 108 (133)
T ss_pred ceeEEEeeccccccCcceEecCcEEEEEEEECcccCCC
Confidence 2 3468999999999999876
No 114
>cd02342 ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=97.07 E-value=0.00026 Score=46.55 Aligned_cols=31 Identities=23% Similarity=0.571 Sum_probs=27.8
Q ss_pred ccccccc-CCCCCcEEeCCC-CCccccccccCC
Q 043301 34 ICDICET-SLQGPAYGCGTC-EFSIHKSCAELP 64 (244)
Q Consensus 34 ~C~~C~~-~i~g~~Y~C~~C-~F~lH~~Ca~~p 64 (244)
.||+|+. +|.|..|+|..| +|+|++.|....
T Consensus 2 ~CDgCg~~PI~G~RykC~~C~dyDLC~~C~~~~ 34 (43)
T cd02342 2 QCDGCGVLPITGPRYKSKVKEDYDLCTICFSRM 34 (43)
T ss_pred CCCCCCCCcccccceEeCCCCCCccHHHHhhhh
Confidence 6999996 899999999999 799999998754
No 115
>cd02343 ZZ_EF Zinc finger, ZZ type. Zinc finger present in proteins with an EF_hand motif. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=97.07 E-value=0.00037 Score=47.04 Aligned_cols=44 Identities=23% Similarity=0.426 Sum_probs=33.4
Q ss_pred cccccccCCCCCcEEeCCC-CCccccccccCCCcCCCCCCCCcce
Q 043301 34 ICDICETSLQGPAYGCGTC-EFSIHKSCAELPLKIDHPFHCHPLT 77 (244)
Q Consensus 34 ~C~~C~~~i~g~~Y~C~~C-~F~lH~~Ca~~p~~i~hp~H~H~L~ 77 (244)
.|++|...+.|+.|+|.+| +|+|+..|.........-...||+.
T Consensus 2 ~CdgC~~~~~~~RykCl~C~d~DlC~~Cf~~g~~~~~H~~~Hpm~ 46 (48)
T cd02343 2 SCDGCDEIAPWHRYRCLQCTDMDLCKTCFLGGVKPEGHEDDHEMV 46 (48)
T ss_pred CCCCCCCcCCCceEECCCCCCchhHHHHHhCCccCCCCCCCCCcc
Confidence 5999998888999999999 7999999988655443222246653
No 116
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=97.05 E-value=0.00028 Score=67.43 Aligned_cols=45 Identities=27% Similarity=0.589 Sum_probs=36.5
Q ss_pred CCCEeeeeccCCCcccccccccccCCCCC---cEEeCCCCCccccccccCCCc
Q 043301 17 HYLIFNENEVGHDDVVIICDICETSLQGP---AYGCGTCEFSIHKSCAELPLK 66 (244)
Q Consensus 17 H~L~L~~~~~~~~~~~~~C~~C~~~i~g~---~Y~C~~C~F~lH~~Ca~~p~~ 66 (244)
|.++++ .+..+++||+||.-+.|. +.+|+.|+..+|.+|.+..+.
T Consensus 111 Hkf~~~-----tYssPTFCDhCGsLLyGl~HQGmKC~~C~mNVH~rCv~nVPs 158 (683)
T KOG0696|consen 111 HKFKIH-----TYSSPTFCDHCGSLLYGLIHQGMKCDTCDMNVHHRCVENVPS 158 (683)
T ss_pred cceeee-----ecCCCchhhhHHHHHHHHHhcccccccccchHHHHHhhcCCc
Confidence 666652 257799999999998874 899999999999999986543
No 117
>cd02344 ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=97.05 E-value=0.00047 Score=45.93 Aligned_cols=30 Identities=30% Similarity=0.986 Sum_probs=27.2
Q ss_pred ccccccc-CCCCCcEEeCCC-CCccccccccC
Q 043301 34 ICDICET-SLQGPAYGCGTC-EFSIHKSCAEL 63 (244)
Q Consensus 34 ~C~~C~~-~i~g~~Y~C~~C-~F~lH~~Ca~~ 63 (244)
.||+|+. +|.|..|+|.+| +|+|++.|...
T Consensus 2 ~Cd~C~~~pI~G~RykC~~C~dyDLC~~Cf~~ 33 (45)
T cd02344 2 TCDGCQMFPINGPRFKCRNCDDFDFCENCFKT 33 (45)
T ss_pred CCCCCCCCCCccCeEECCCCCCccchHHhhCC
Confidence 6999985 899999999999 69999999875
No 118
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=97.04 E-value=0.00043 Score=45.84 Aligned_cols=43 Identities=26% Similarity=0.511 Sum_probs=34.4
Q ss_pred CcceEeec-CcccccccccCCCC---eeEEcCCccceeccccccCcC
Q 043301 74 HPLTLSKT-NHHRCDACLDECSG---MAYRCHECCYNLHYHCTALKP 116 (244)
Q Consensus 74 H~L~L~~~-~~~~Cd~Cg~~~~g---~~Y~C~~Cd~~lH~~Ca~~p~ 116 (244)
|.|..... .+.+|++|++.+.| .+|+|..|++.+|.+|+...+
T Consensus 1 H~f~~~~~~~~~~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~~v~ 47 (50)
T cd00029 1 HRFVRKSFFKPTFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCADKVP 47 (50)
T ss_pred CccEEeeCCCCCChhhcchhhhccccceeEcCCCCCchhhhhhccCC
Confidence 34444443 57899999998876 679999999999999998763
No 119
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=97.03 E-value=0.00069 Score=45.69 Aligned_cols=43 Identities=23% Similarity=0.549 Sum_probs=33.6
Q ss_pred cccccccCCC-CCcEEeCCC-CCccccccccCCCcCCCCCC--CCcceE
Q 043301 34 ICDICETSLQ-GPAYGCGTC-EFSIHKSCAELPLKIDHPFH--CHPLTL 78 (244)
Q Consensus 34 ~C~~C~~~i~-g~~Y~C~~C-~F~lH~~Ca~~p~~i~hp~H--~H~L~L 78 (244)
.|++|...+. |..|+|.+| +|+|+..|....... ..| .|++.+
T Consensus 2 ~Cd~C~~~~~~g~r~~C~~C~d~dLC~~Cf~~g~~~--~~H~~~H~~~~ 48 (49)
T cd02335 2 HCDYCSKDITGTIRIKCAECPDFDLCLECFSAGAEI--GKHRNDHNYRV 48 (49)
T ss_pred CCCCcCCCCCCCcEEECCCCCCcchhHHhhhCcCCC--CCCCCCCCeEe
Confidence 5999999875 599999999 899999999866443 234 577654
No 120
>cd02345 ZZ_dah Zinc finger, ZZ type. Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.
Probab=97.01 E-value=0.00044 Score=46.75 Aligned_cols=32 Identities=22% Similarity=0.697 Sum_probs=28.8
Q ss_pred ccccccc-CCCCCcEEeCCC-CCccccccccCCC
Q 043301 34 ICDICET-SLQGPAYGCGTC-EFSIHKSCAELPL 65 (244)
Q Consensus 34 ~C~~C~~-~i~g~~Y~C~~C-~F~lH~~Ca~~p~ 65 (244)
.|++|.. +|.|..|+|.+| +|+|+..|.....
T Consensus 2 ~C~~C~~~~i~g~R~~C~~C~dydLC~~Cf~~~~ 35 (49)
T cd02345 2 SCSACRKQDISGIRFPCQVCRDYSLCLGCYTKGR 35 (49)
T ss_pred cCCCCCCCCceEeeEECCCCCCcCchHHHHhCCC
Confidence 5999998 899999999999 7999999987553
No 121
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=96.97 E-value=0.00064 Score=44.97 Aligned_cols=35 Identities=31% Similarity=0.706 Sum_probs=30.9
Q ss_pred cccccccccccCCCC---CcEEeCCCCCccccccccCC
Q 043301 30 DVVIICDICETSLQG---PAYGCGTCEFSIHKSCAELP 64 (244)
Q Consensus 30 ~~~~~C~~C~~~i~g---~~Y~C~~C~F~lH~~Ca~~p 64 (244)
..+.+|+.|+..|+| .+|+|..|++.+|++|+...
T Consensus 9 ~~~~~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~~v 46 (50)
T cd00029 9 FKPTFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCADKV 46 (50)
T ss_pred CCCCChhhcchhhhccccceeEcCCCCCchhhhhhccC
Confidence 357899999999987 68999999999999999754
No 122
>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.
Probab=96.96 E-value=0.00053 Score=45.63 Aligned_cols=31 Identities=32% Similarity=0.808 Sum_probs=27.6
Q ss_pred ccccccc-CCCCeeEEcCCc-cceeccccccCc
Q 043301 85 RCDACLD-ECSGMAYRCHEC-CYNLHYHCTALK 115 (244)
Q Consensus 85 ~Cd~Cg~-~~~g~~Y~C~~C-d~~lH~~Ca~~p 115 (244)
.||.|++ .+.|.+|+|..| ||+++..|....
T Consensus 2 ~Cd~C~~~~i~G~RykC~~C~dyDLC~~C~~~~ 34 (45)
T cd02339 2 ICDTCRKQGIIGIRWKCAECPNYDLCTTCYHGD 34 (45)
T ss_pred CCCCCCCCCcccCeEECCCCCCccchHHHhCCC
Confidence 6999995 688999999999 899999999843
No 123
>cd02343 ZZ_EF Zinc finger, ZZ type. Zinc finger present in proteins with an EF_hand motif. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=96.94 E-value=0.00047 Score=46.52 Aligned_cols=31 Identities=29% Similarity=0.602 Sum_probs=28.5
Q ss_pred cccccccCCCCeeEEcCCc-cceeccccccCc
Q 043301 85 RCDACLDECSGMAYRCHEC-CYNLHYHCTALK 115 (244)
Q Consensus 85 ~Cd~Cg~~~~g~~Y~C~~C-d~~lH~~Ca~~p 115 (244)
.||.|+..+.|++|+|..| ||+++..|...-
T Consensus 2 ~CdgC~~~~~~~RykCl~C~d~DlC~~Cf~~g 33 (48)
T cd02343 2 SCDGCDEIAPWHRYRCLQCTDMDLCKTCFLGG 33 (48)
T ss_pred CCCCCCCcCCCceEECCCCCCchhHHHHHhCC
Confidence 5999999888999999999 899999999765
No 124
>PLN03008 Phospholipase D delta
Probab=96.93 E-value=0.00041 Score=71.00 Aligned_cols=58 Identities=12% Similarity=0.083 Sum_probs=39.9
Q ss_pred CcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEEEEeccCccccc
Q 043301 171 QLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVEFWDLDDVLVN 242 (244)
Q Consensus 171 ~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (244)
+-||||++ ..|......+|++.-.+.||.||| +|.|.+.. ...-|.++|||||+.+.-
T Consensus 75 ~tSDPYV~---------I~Lg~~rv~RTrVi~n~~NPvWNE---~F~f~vah--~~s~L~f~VkD~D~~gaD 132 (868)
T PLN03008 75 ITSDPYVT---------VVVPQATLARTRVLKNSQEPLWDE---KFNISIAH--PFAYLEFQVKDDDVFGAQ 132 (868)
T ss_pred CCCCceEE---------EEECCcceeeEEeCCCCCCCCcce---eEEEEecC--CCceEEEEEEcCCccCCc
Confidence 35788877 445333333566333466777777 79998775 456899999999998753
No 125
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=96.92 E-value=0.00022 Score=69.84 Aligned_cols=48 Identities=25% Similarity=0.497 Sum_probs=41.6
Q ss_pred CCCCcceEeec-CcccccccccCCCCe---eEEcCCccceeccccccCcCcc
Q 043301 71 FHCHPLTLSKT-NHHRCDACLDECSGM---AYRCHECCYNLHYHCTALKPSI 118 (244)
Q Consensus 71 ~H~H~L~L~~~-~~~~Cd~Cg~~~~g~---~Y~C~~Cd~~lH~~Ca~~p~~i 118 (244)
.++|.|..++| .+++||.||+.+.|+ +.+|..|+.+.|++|+...|.-
T Consensus 143 i~PH~l~vhSY~~PtFCD~CGEmL~GLvrQGlKC~gCglNyHKRCa~kipNN 194 (888)
T KOG4236|consen 143 IRPHTLFVHSYKAPTFCDFCGEMLFGLVRQGLKCEGCGLNYHKRCAFKIPNN 194 (888)
T ss_pred eecceeeeecccCchHHHHHHHHHHHHHHccccccCCCCcHhhhhhhcCCCC
Confidence 46888988888 999999999987775 6999999999999999776654
No 126
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=96.87 E-value=0.00074 Score=44.85 Aligned_cols=32 Identities=34% Similarity=0.796 Sum_probs=29.3
Q ss_pred ccccccccCCCCeeEEcCCc-cceeccccccCc
Q 043301 84 HRCDACLDECSGMAYRCHEC-CYNLHYHCTALK 115 (244)
Q Consensus 84 ~~Cd~Cg~~~~g~~Y~C~~C-d~~lH~~Ca~~p 115 (244)
..|+.|++.+.|.+|+|..| +|+++..|....
T Consensus 1 ~~C~~C~~~i~g~r~~C~~C~d~dLC~~Cf~~~ 33 (46)
T cd02249 1 YSCDGCLKPIVGVRYHCLVCEDFDLCSSCYAKG 33 (46)
T ss_pred CCCcCCCCCCcCCEEECCCCCCCcCHHHHHCcC
Confidence 36999999999999999999 699999999866
No 127
>cd02345 ZZ_dah Zinc finger, ZZ type. Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.
Probab=96.81 E-value=0.00088 Score=45.29 Aligned_cols=31 Identities=32% Similarity=0.823 Sum_probs=28.5
Q ss_pred ccccccc-CCCCeeEEcCCc-cceeccccccCc
Q 043301 85 RCDACLD-ECSGMAYRCHEC-CYNLHYHCTALK 115 (244)
Q Consensus 85 ~Cd~Cg~-~~~g~~Y~C~~C-d~~lH~~Ca~~p 115 (244)
.|+.|++ .+.|.+|+|..| ||+++..|....
T Consensus 2 ~C~~C~~~~i~g~R~~C~~C~dydLC~~Cf~~~ 34 (49)
T cd02345 2 SCSACRKQDISGIRFPCQVCRDYSLCLGCYTKG 34 (49)
T ss_pred cCCCCCCCCceEeeEECCCCCCcCchHHHHhCC
Confidence 5999999 899999999999 899999999855
No 128
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=96.76 E-value=0.00048 Score=45.15 Aligned_cols=35 Identities=31% Similarity=0.663 Sum_probs=30.7
Q ss_pred cccccccccccCCCCC--cEEeCCCCCccccccccCC
Q 043301 30 DVVIICDICETSLQGP--AYGCGTCEFSIHKSCAELP 64 (244)
Q Consensus 30 ~~~~~C~~C~~~i~g~--~Y~C~~C~F~lH~~Ca~~p 64 (244)
..+.+|+.|+..|++. +|+|..|++.+|++|+...
T Consensus 9 ~~~~~C~~C~~~i~~~~~~~~C~~C~~~~H~~C~~~v 45 (49)
T smart00109 9 KKPTKCCVCRKSIWGSFQGLRCSWCKVKCHKKCAEKV 45 (49)
T ss_pred CCCCCccccccccCcCCCCcCCCCCCchHHHHHHhhc
Confidence 4578999999999873 8999999999999998753
No 129
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=96.73 E-value=0.00058 Score=44.77 Aligned_cols=35 Identities=26% Similarity=0.580 Sum_probs=30.7
Q ss_pred CcccccccccCCCCe--eEEcCCccceeccccccCcC
Q 043301 82 NHHRCDACLDECSGM--AYRCHECCYNLHYHCTALKP 116 (244)
Q Consensus 82 ~~~~Cd~Cg~~~~g~--~Y~C~~Cd~~lH~~Ca~~p~ 116 (244)
.+.+|++|++.+.+. +|+|..|++.+|.+|+...+
T Consensus 10 ~~~~C~~C~~~i~~~~~~~~C~~C~~~~H~~C~~~v~ 46 (49)
T smart00109 10 KPTKCCVCRKSIWGSFQGLRCSWCKVKCHKKCAEKVP 46 (49)
T ss_pred CCCCccccccccCcCCCCcCCCCCCchHHHHHHhhcC
Confidence 678999999987764 79999999999999998763
No 130
>cd02338 ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.
Probab=96.69 E-value=0.0012 Score=44.59 Aligned_cols=31 Identities=32% Similarity=0.782 Sum_probs=28.1
Q ss_pred cccccc-cCCCCeeEEcCCc-cceeccccccCc
Q 043301 85 RCDACL-DECSGMAYRCHEC-CYNLHYHCTALK 115 (244)
Q Consensus 85 ~Cd~Cg-~~~~g~~Y~C~~C-d~~lH~~Ca~~p 115 (244)
.|+.|+ ..+.|.+|+|..| ||++...|....
T Consensus 2 ~C~~C~~~~i~g~R~~C~~C~d~dlC~~Cf~~~ 34 (49)
T cd02338 2 SCDGCGKSNFTGRRYKCLICYDYDLCADCYDSG 34 (49)
T ss_pred CCCCCcCCCcEEeeEEeCCCCCCccchhHHhCC
Confidence 699999 5788999999999 899999999866
No 131
>cd02334 ZZ_dystrophin Zinc finger, ZZ type. Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan.
Probab=96.61 E-value=0.0014 Score=44.36 Aligned_cols=31 Identities=32% Similarity=0.890 Sum_probs=28.0
Q ss_pred ccccccc-CCCCeeEEcCCc-cceeccccccCc
Q 043301 85 RCDACLD-ECSGMAYRCHEC-CYNLHYHCTALK 115 (244)
Q Consensus 85 ~Cd~Cg~-~~~g~~Y~C~~C-d~~lH~~Ca~~p 115 (244)
.|+.|+. .+.|.+|+|..| ||+|+..|...-
T Consensus 2 ~Cd~C~~~pi~g~RykC~~C~d~DLC~~Cf~~g 34 (49)
T cd02334 2 KCNICKEFPITGFRYRCLKCFNYDLCQSCFFSG 34 (49)
T ss_pred CCCCCCCCCceeeeEECCCCCCcCchHHHHhCC
Confidence 6999997 589999999999 899999999755
No 132
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=96.59 E-value=0.0012 Score=43.54 Aligned_cols=33 Identities=27% Similarity=0.735 Sum_probs=29.4
Q ss_pred cccccccccCCCCCcEEeCCC-CCccccccccCC
Q 043301 32 VIICDICETSLQGPAYGCGTC-EFSIHKSCAELP 64 (244)
Q Consensus 32 ~~~C~~C~~~i~g~~Y~C~~C-~F~lH~~Ca~~p 64 (244)
...|+.|+.+|.|..|+|..| +|+|+..|....
T Consensus 4 ~~~C~~C~~~i~g~ry~C~~C~d~dlC~~Cf~~~ 37 (44)
T smart00291 4 SYSCDTCGKPIVGVRYHCLVCPDYDLCQSCFAKG 37 (44)
T ss_pred CcCCCCCCCCCcCCEEECCCCCCccchHHHHhCc
Confidence 467999999999999999999 799999998643
No 133
>cd02337 ZZ_CBP Zinc finger, ZZ type. Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that provides binding sites for transcriptional coactivators, the role of the ZZ domain in CBP/p300 is unclear.
Probab=96.58 E-value=0.0013 Score=42.89 Aligned_cols=37 Identities=19% Similarity=0.614 Sum_probs=29.9
Q ss_pred cccccccCCCCCcEEeCCC-CCccccccccCCCcCCCCCCCCcce
Q 043301 34 ICDICETSLQGPAYGCGTC-EFSIHKSCAELPLKIDHPFHCHPLT 77 (244)
Q Consensus 34 ~C~~C~~~i~g~~Y~C~~C-~F~lH~~Ca~~p~~i~hp~H~H~L~ 77 (244)
.|+.|.. +.|.+|+|+.| +|+++..|... +.|+|.|+
T Consensus 2 ~C~~C~~-~~~~r~~C~~C~dfDLC~~C~~~------~~H~H~~~ 39 (41)
T cd02337 2 TCNECKH-HVETRWHCTVCEDYDLCITCYNT------KNHPHKME 39 (41)
T ss_pred cCCCCCC-cCCCceECCCCcchhhHHHHhCC------CCCCcccc
Confidence 5999977 55799999999 79999999864 44677654
No 134
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=96.57 E-value=0.0022 Score=46.38 Aligned_cols=42 Identities=17% Similarity=0.258 Sum_probs=31.3
Q ss_pred CCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEEEEeccCccc
Q 043301 195 DQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVEFWDLDDVL 240 (244)
Q Consensus 195 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (244)
..+|+..-.+.+|.||| .|.|.+...+ ...|.|+|||.+...
T Consensus 36 ~~~T~~~~~~~~P~w~e---~~~~~~~~~~-~~~l~i~v~~~~~~~ 77 (101)
T smart00239 36 KKKTKVVKNTLNPVWNE---TFEFEVPPPE-LAELEIEVYDKDRFG 77 (101)
T ss_pred eEeeeEecCCCCCcccc---eEEEEecCcc-cCEEEEEEEecCCcc
Confidence 35555333355888887 6999887777 899999999998653
No 135
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=96.52 E-value=0.0017 Score=65.41 Aligned_cols=95 Identities=21% Similarity=0.114 Sum_probs=69.9
Q ss_pred CCcEEEEEeccCC--cceeeecccccccccCCCCcchhhHHHHhhhhccccccccc-CCCCceeEeecCCCCChhhhhhh
Q 043301 140 QDVELRTIQERNP--EDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSET-GDQGSKVTISESYPYSDDTLAQF 216 (244)
Q Consensus 140 ~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~-~~~~~~~~i~~~~~~~~~~~~~~ 216 (244)
|.+.+++.-..|. +-+.|--|.. ++|.|+||||||.+-++ -+++-+=|- ..|+|++.-+++||+.+| +|
T Consensus 934 g~lsvr~~y~~n~q~L~veVlhA~d-iipLD~NGlSDPFVviE----l~P~~~fp~v~~q~T~V~~rtLnPVfDE---~F 1005 (1103)
T KOG1328|consen 934 GVLSVRAYYNGNAQTLVVEVLHAKD-IIPLDSNGLSDPFVVIE----LIPKFRFPAVPVQKTKVVSRTLNPVFDE---TF 1005 (1103)
T ss_pred CceEEEEEeeccccchhhhhhcccc-ccccCCCCCCCCeEEEE----eccccccccchhhhhhhhhccccchhhh---he
Confidence 5667777665554 6678888874 89999999999986633 112222222 789999888899999999 69
Q ss_pred hhhcCCCCccce---eEEEEeccCccccc
Q 043301 217 ILRLQNSLRSKN---MSVEFWDLDDVLVN 242 (244)
Q Consensus 217 ~~~~~~~~~~~~---~~~~~~~~~~~~~~ 242 (244)
-|.+-++--.+| +...|-|-|-.+.|
T Consensus 1006 eFsVp~e~c~te~Am~~FTVMDHD~L~sN 1034 (1103)
T KOG1328|consen 1006 EFSVPPEPCSTETAMLHFTVMDHDYLRSN 1034 (1103)
T ss_pred eeecCccccccccceEEEEeeccceeccc
Confidence 999998876655 67788887776666
No 136
>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.
Probab=96.51 E-value=0.00073 Score=44.99 Aligned_cols=32 Identities=28% Similarity=0.725 Sum_probs=25.8
Q ss_pred ccccccccc-CCCCCcEEeCCC-CCccccccccC
Q 043301 32 VIICDICET-SLQGPAYGCGTC-EFSIHKSCAEL 63 (244)
Q Consensus 32 ~~~C~~C~~-~i~g~~Y~C~~C-~F~lH~~Ca~~ 63 (244)
...|++|+. +|.|..|+|.+| +|+|+..|...
T Consensus 4 ~~~C~~C~~~~i~g~Ry~C~~C~d~dLC~~C~~~ 37 (46)
T PF00569_consen 4 GYTCDGCGTDPIIGVRYHCLVCPDYDLCEDCFSK 37 (46)
T ss_dssp SCE-SSS-SSSEESSEEEESSSSS-EEEHHHHHH
T ss_pred CeECcCCCCCcCcCCeEECCCCCCCchhhHHHhC
Confidence 468999998 889999999999 69999999864
No 137
>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.
Probab=96.49 E-value=0.00081 Score=44.77 Aligned_cols=32 Identities=31% Similarity=0.701 Sum_probs=25.9
Q ss_pred ccccccccc-CCCCeeEEcCCc-cceeccccccC
Q 043301 83 HHRCDACLD-ECSGMAYRCHEC-CYNLHYHCTAL 114 (244)
Q Consensus 83 ~~~Cd~Cg~-~~~g~~Y~C~~C-d~~lH~~Ca~~ 114 (244)
...|+.|+. .+.|.+|+|..| ||+|+..|...
T Consensus 4 ~~~C~~C~~~~i~g~Ry~C~~C~d~dLC~~C~~~ 37 (46)
T PF00569_consen 4 GYTCDGCGTDPIIGVRYHCLVCPDYDLCEDCFSK 37 (46)
T ss_dssp SCE-SSS-SSSEESSEEEESSSSS-EEEHHHHHH
T ss_pred CeECcCCCCCcCcCCeEECCCCCCCchhhHHHhC
Confidence 568999999 688999999999 79999999874
No 138
>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=96.46 E-value=0.0019 Score=43.55 Aligned_cols=32 Identities=31% Similarity=0.792 Sum_probs=28.8
Q ss_pred cccccccc-CCCCeeEEcCCcc---ceeccccccCc
Q 043301 84 HRCDACLD-ECSGMAYRCHECC---YNLHYHCTALK 115 (244)
Q Consensus 84 ~~Cd~Cg~-~~~g~~Y~C~~Cd---~~lH~~Ca~~p 115 (244)
+.|+.|++ .+.|.+|+|..|. |++...|....
T Consensus 1 y~Cd~C~~~pI~G~R~~C~~C~~~d~DlC~~C~~~~ 36 (48)
T cd02341 1 FKCDSCGIEPIPGTRYHCSECDDGDFDLCQDCVVKG 36 (48)
T ss_pred CCCCCCCCCccccceEECCCCCCCCCccCHHHHhCc
Confidence 36999999 7999999999997 99999999866
No 139
>cd02344 ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=96.43 E-value=0.0023 Score=42.63 Aligned_cols=31 Identities=23% Similarity=0.776 Sum_probs=27.9
Q ss_pred ccccccc-CCCCeeEEcCCc-cceeccccccCc
Q 043301 85 RCDACLD-ECSGMAYRCHEC-CYNLHYHCTALK 115 (244)
Q Consensus 85 ~Cd~Cg~-~~~g~~Y~C~~C-d~~lH~~Ca~~p 115 (244)
.||.|+. .+.|.+|+|..| ||+++..|....
T Consensus 2 ~Cd~C~~~pI~G~RykC~~C~dyDLC~~Cf~~~ 34 (45)
T cd02344 2 TCDGCQMFPINGPRFKCRNCDDFDFCENCFKTR 34 (45)
T ss_pred CCCCCCCCCCccCeEECCCCCCccchHHhhCCC
Confidence 6999997 689999999999 799999999764
No 140
>KOG4582 consensus Uncharacterized conserved protein, contains ZZ-type Zn-finger [General function prediction only]
Probab=96.42 E-value=0.0015 Score=59.32 Aligned_cols=41 Identities=24% Similarity=0.730 Sum_probs=33.9
Q ss_pred cccccccc-CCCCCcEEeCCC-CCccccccccCCCcCCCCCC-CCcceE
Q 043301 33 IICDICET-SLQGPAYGCGTC-EFSIHKSCAELPLKIDHPFH-CHPLTL 78 (244)
Q Consensus 33 ~~C~~C~~-~i~g~~Y~C~~C-~F~lH~~Ca~~p~~i~hp~H-~H~L~L 78 (244)
..||.|+. +|.|..|+|.+| +|+|+++|-... +.| +|.|.-
T Consensus 153 v~CD~C~~~~IvG~RyKC~~C~dYDLCe~Ce~~~-----~~h~~H~~lR 196 (278)
T KOG4582|consen 153 VPCDNCGKPGIVGARYKCTVCPDYDLCERCEAGN-----EHHAAHAMLR 196 (278)
T ss_pred ccCCCccCCccccceeeecCCCccchhHHhhcCC-----CCCcccceee
Confidence 68999999 899999999999 799999997643 345 676543
No 141
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=96.20 E-value=0.0044 Score=44.26 Aligned_cols=33 Identities=24% Similarity=0.475 Sum_probs=26.5
Q ss_pred cCCCCChhhhhhhhhhcCCCCccceeEEEEeccCccc
Q 043301 204 ESYPYSDDTLAQFILRLQNSLRSKNMSVEFWDLDDVL 240 (244)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (244)
+.+|.|++ .|.|.+... ..++|.|+|||++...
T Consensus 42 ~~~P~w~~---~~~~~~~~~-~~~~l~i~v~~~~~~~ 74 (102)
T cd00030 42 TLNPVWNE---TFEFPVLDP-ESDTLTVEVWDKDRFS 74 (102)
T ss_pred CCCCcccc---eEEEEccCC-CCCEEEEEEEecCCCC
Confidence 46788887 588887775 6788999999998764
No 142
>cd02342 ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=96.16 E-value=0.0022 Score=42.19 Aligned_cols=31 Identities=26% Similarity=0.480 Sum_probs=28.0
Q ss_pred ccccccc-CCCCeeEEcCCc-cceeccccccCc
Q 043301 85 RCDACLD-ECSGMAYRCHEC-CYNLHYHCTALK 115 (244)
Q Consensus 85 ~Cd~Cg~-~~~g~~Y~C~~C-d~~lH~~Ca~~p 115 (244)
.||.||. .+.|.+|+|..| ||+++..|....
T Consensus 2 ~CDgCg~~PI~G~RykC~~C~dyDLC~~C~~~~ 34 (43)
T cd02342 2 QCDGCGVLPITGPRYKSKVKEDYDLCTICFSRM 34 (43)
T ss_pred CCCCCCCCcccccceEeCCCCCCccHHHHhhhh
Confidence 5999998 589999999999 899999998765
No 143
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=96.10 E-value=0.0051 Score=41.43 Aligned_cols=31 Identities=26% Similarity=0.769 Sum_probs=27.6
Q ss_pred cccccccCCC-CeeEEcCCc-cceeccccccCc
Q 043301 85 RCDACLDECS-GMAYRCHEC-CYNLHYHCTALK 115 (244)
Q Consensus 85 ~Cd~Cg~~~~-g~~Y~C~~C-d~~lH~~Ca~~p 115 (244)
.|+.|++.+. |.+|+|..| ||++...|....
T Consensus 2 ~Cd~C~~~~~~g~r~~C~~C~d~dLC~~Cf~~g 34 (49)
T cd02335 2 HCDYCSKDITGTIRIKCAECPDFDLCLECFSAG 34 (49)
T ss_pred CCCCcCCCCCCCcEEECCCCCCcchhHHhhhCc
Confidence 5999999765 589999999 999999999866
No 144
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=96.10 E-value=0.0013 Score=66.03 Aligned_cols=79 Identities=16% Similarity=0.302 Sum_probs=51.8
Q ss_pred cceeeecccccccccCCCCcchhhHHHH-------------------------hhhhcccccccccCCCCceeEeecCCC
Q 043301 153 EDLTFHDVFSSFTEKDRNQLDDITENIE-------------------------SEIAGIKKTLSETGDQGSKVTISESYP 207 (244)
Q Consensus 153 ~~~~v~~~~~~~~~~~~n~l~d~~~~~~-------------------------~~~~~~~~~l~~~~~~~~~~~i~~~~~ 207 (244)
+.+++-++.+ |+..|+||+|||+.... |.+.+++++|+-. |-.--+.+||
T Consensus 116 l~is~~~ak~-l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIka----tsvk~~TLnP 190 (1103)
T KOG1328|consen 116 LNISLLEAKD-LIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKA----TSVKKKTLNP 190 (1103)
T ss_pred HHHHHHHhcC-ccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhh----cccccccCCc
Confidence 4488899984 89999999999954322 1123344444422 2212235677
Q ss_pred CChhhhhhhhhhcCCCCccceeEEEEeccCccc
Q 043301 208 YSDDTLAQFILRLQNSLRSKNMSVEFWDLDDVL 240 (244)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (244)
.|+| .|.|.+..-..| -+.+.+||-|+.+
T Consensus 191 kW~E---kF~F~IeDv~tD-qfHlDIWDHDDe~ 219 (1103)
T KOG1328|consen 191 KWSE---KFQFTIEDVQTD-QFHLDIWDHDDEE 219 (1103)
T ss_pred chhh---heeeehhccccc-eeeeecccCCccH
Confidence 7777 688887544333 5899999999865
No 145
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=96.08 E-value=0.0032 Score=41.45 Aligned_cols=33 Identities=33% Similarity=0.712 Sum_probs=29.8
Q ss_pred cccccccccCCCCeeEEcCCc-cceeccccccCc
Q 043301 83 HHRCDACLDECSGMAYRCHEC-CYNLHYHCTALK 115 (244)
Q Consensus 83 ~~~Cd~Cg~~~~g~~Y~C~~C-d~~lH~~Ca~~p 115 (244)
...|+.|+..+.|.+|+|..| ||++...|....
T Consensus 4 ~~~C~~C~~~i~g~ry~C~~C~d~dlC~~Cf~~~ 37 (44)
T smart00291 4 SYSCDTCGKPIVGVRYHCLVCPDYDLCQSCFAKG 37 (44)
T ss_pred CcCCCCCCCCCcCCEEECCCCCCccchHHHHhCc
Confidence 467999999999999999999 899999998754
No 146
>cd02337 ZZ_CBP Zinc finger, ZZ type. Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that provides binding sites for transcriptional coactivators, the role of the ZZ domain in CBP/p300 is unclear.
Probab=95.50 E-value=0.0074 Score=39.34 Aligned_cols=31 Identities=26% Similarity=0.667 Sum_probs=26.7
Q ss_pred ccccccccCCCCeeEEcCCc-cceeccccccCc
Q 043301 84 HRCDACLDECSGMAYRCHEC-CYNLHYHCTALK 115 (244)
Q Consensus 84 ~~Cd~Cg~~~~g~~Y~C~~C-d~~lH~~Ca~~p 115 (244)
+.|+.|+. ..|.+|+|..| ||++...|...+
T Consensus 1 y~C~~C~~-~~~~r~~C~~C~dfDLC~~C~~~~ 32 (41)
T cd02337 1 YTCNECKH-HVETRWHCTVCEDYDLCITCYNTK 32 (41)
T ss_pred CcCCCCCC-cCCCceECCCCcchhhHHHHhCCC
Confidence 36999988 45799999999 899999999766
No 147
>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]
Probab=95.31 E-value=0.014 Score=54.26 Aligned_cols=49 Identities=22% Similarity=0.386 Sum_probs=36.4
Q ss_pred cccccccccccCC-CCCcEEeCCC-CCccccccccCCCcCCCCCCCCcceE
Q 043301 30 DVVIICDICETSL-QGPAYGCGTC-EFSIHKSCAELPLKIDHPFHCHPLTL 78 (244)
Q Consensus 30 ~~~~~C~~C~~~i-~g~~Y~C~~C-~F~lH~~Ca~~p~~i~hp~H~H~L~L 78 (244)
.+...|++|+..- .|..|+|-.| +|+++..|.+....+.-..+.||+..
T Consensus 6 He~v~CdgC~k~~~t~rrYkCL~C~DyDlC~sCyen~~tt~~H~~dHPmqc 56 (381)
T KOG1280|consen 6 HEGVSCDGCGKTAFTFRRYKCLRCSDYDLCFSCYENGATTPIHDEDHPMQC 56 (381)
T ss_pred cCCceeccccccceeeeeeEeeeecchhHHHHHhhcCCCCcccCCCCceeE
Confidence 4568999999876 5679999999 79999999987544322233666544
No 148
>KOG1280 consensus Uncharacterized conserved protein containing ZZ-type Zn-finger [General function prediction only]
Probab=94.80 E-value=0.016 Score=53.92 Aligned_cols=35 Identities=26% Similarity=0.637 Sum_probs=30.1
Q ss_pred CcccccccccC-CCCeeEEcCCc-cceeccccccCcC
Q 043301 82 NHHRCDACLDE-CSGMAYRCHEC-CYNLHYHCTALKP 116 (244)
Q Consensus 82 ~~~~Cd~Cg~~-~~g~~Y~C~~C-d~~lH~~Ca~~p~ 116 (244)
....||+||+. +.|.+|||..| ||+++..|...-.
T Consensus 7 e~v~CdgC~k~~~t~rrYkCL~C~DyDlC~sCyen~~ 43 (381)
T KOG1280|consen 7 EGVSCDGCGKTAFTFRRYKCLRCSDYDLCFSCYENGA 43 (381)
T ss_pred CCceeccccccceeeeeeEeeeecchhHHHHHhhcCC
Confidence 35689999996 67889999999 9999999987663
No 149
>PLN02952 phosphoinositide phospholipase C
Probab=94.60 E-value=0.014 Score=58.35 Aligned_cols=59 Identities=19% Similarity=0.286 Sum_probs=40.4
Q ss_pred hhhHHHHhhhhcccccccccCCCCceeEee-cCCCCChhhhhhhhhhcCCCCccceeEEEEeccCccccc
Q 043301 174 DITENIESEIAGIKKTLSETGDQGSKVTIS-ESYPYSDDTLAQFILRLQNSLRSKNMSVEFWDLDDVLVN 242 (244)
Q Consensus 174 d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (244)
|||+++ ++.+++.. ..+++|+ +|. +.+|.||| +|.|.+...+. --|.|+|||+|..+.|
T Consensus 498 D~yV~V--~i~G~p~D---~~~~kTk-vi~nN~nPvWnE---~F~F~i~~PEL-Allrf~V~D~D~~~~d 557 (599)
T PLN02952 498 DFYTKM--YIVGVPAD---NAKKKTK-IIEDNWYPAWNE---EFSFPLTVPEL-ALLRIEVREYDMSEKD 557 (599)
T ss_pred CceEEE--EEeccCCC---Ccceeee-eccCCCCcccCC---eeEEEEEcCCc-cEEEEEEEecCCCCCC
Confidence 778765 34444432 2456777 455 47788887 69998886554 3678899999998765
No 150
>KOG4582 consensus Uncharacterized conserved protein, contains ZZ-type Zn-finger [General function prediction only]
Probab=94.45 E-value=0.019 Score=52.30 Aligned_cols=32 Identities=34% Similarity=0.749 Sum_probs=29.6
Q ss_pred cccccccc-CCCCeeEEcCCc-cceeccccccCc
Q 043301 84 HRCDACLD-ECSGMAYRCHEC-CYNLHYHCTALK 115 (244)
Q Consensus 84 ~~Cd~Cg~-~~~g~~Y~C~~C-d~~lH~~Ca~~p 115 (244)
..||.|+. .+.|.+|+|..| ||+|+.+|....
T Consensus 153 v~CD~C~~~~IvG~RyKC~~C~dYDLCe~Ce~~~ 186 (278)
T KOG4582|consen 153 VPCDNCGKPGIVGARYKCTVCPDYDLCERCEAGN 186 (278)
T ss_pred ccCCCccCCccccceeeecCCCccchhHHhhcCC
Confidence 68999999 899999999999 999999998753
No 151
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=93.02 E-value=0.042 Score=45.34 Aligned_cols=66 Identities=11% Similarity=0.070 Sum_probs=43.8
Q ss_pred CCcceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeE
Q 043301 151 NPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMS 230 (244)
Q Consensus 151 ~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (244)
+-+.+.|-||.. |-+++ |||++ ..|+.+.--.|++.-.+.+|.|+| .|.|...+. -..|.
T Consensus 11 ~sL~v~V~EAk~-Lp~~~-----~~Y~~---------i~Ld~~~vaRT~v~~~~~nP~W~E---~F~f~~~~~--~~~l~ 70 (146)
T cd04013 11 NSLKLWIIEAKG-LPPKK-----RYYCE---------LCLDKTLYARTTSKLKTDTLFWGE---HFEFSNLPP--VSVIT 70 (146)
T ss_pred EEEEEEEEEccC-CCCcC-----CceEE---------EEECCEEEEEEEEEcCCCCCccee---eEEecCCCc--ccEEE
Confidence 456789999985 66654 78877 455544323455333367888888 799875554 36699
Q ss_pred EEEecc
Q 043301 231 VEFWDL 236 (244)
Q Consensus 231 ~~~~~~ 236 (244)
|.||+=
T Consensus 71 v~v~k~ 76 (146)
T cd04013 71 VNLYRE 76 (146)
T ss_pred EEEEEc
Confidence 999843
No 152
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.73 E-value=0.084 Score=49.06 Aligned_cols=72 Identities=14% Similarity=0.112 Sum_probs=50.5
Q ss_pred cccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCcc-ceeEEEEeccCcccc
Q 043301 163 SFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRS-KNMSVEFWDLDDVLV 241 (244)
Q Consensus 163 ~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 241 (244)
-|..||-||-+|||+..+.. ..-....|.||.+-..+++|..++ +|-|...++|.. .-+.|-|||-|--..
T Consensus 244 ~l~ssDsng~sDpyvS~~l~-----pdv~~~fkkKt~~~K~t~~p~fd~---~~~~~i~pgdLa~~kv~lsvgd~~~G~s 315 (362)
T KOG1013|consen 244 HLASSDSNGYSDPYVSQRLS-----PDVGKKFKKKTQQKKKTLNPEFDE---EFFYDIGPGDLAYKKVALSVGDYDIGKS 315 (362)
T ss_pred eeeccccCCCCCccceeecC-----CCcchhhcccCcchhccCCccccc---cccccCCccchhcceEEEeecccCCCcC
Confidence 37899999999999874411 222223555666444566666666 899999999764 678889999886644
Q ss_pred c
Q 043301 242 N 242 (244)
Q Consensus 242 ~ 242 (244)
|
T Consensus 316 ~ 316 (362)
T KOG1013|consen 316 N 316 (362)
T ss_pred c
Confidence 4
No 153
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=92.60 E-value=0.055 Score=42.60 Aligned_cols=27 Identities=11% Similarity=0.185 Sum_probs=22.9
Q ss_pred cCCCCChhhhhhhhhhcCCCCccceeEEEEecc
Q 043301 204 ESYPYSDDTLAQFILRLQNSLRSKNMSVEFWDL 236 (244)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (244)
+.||.||| .|.|.+ |+.+.+.+.|||=
T Consensus 42 srnd~WnE---~F~i~V---dk~nEiel~VyDk 68 (109)
T cd08689 42 SRNDRWNE---DFEIPV---EKNNEEEVIVYDK 68 (109)
T ss_pred CCCCcccc---eEEEEe---cCCcEEEEEEEeC
Confidence 57888888 599999 5899999999984
No 154
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.79 E-value=0.063 Score=49.84 Aligned_cols=86 Identities=17% Similarity=0.067 Sum_probs=54.4
Q ss_pred cCCcceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCcccee
Q 043301 150 RNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNM 229 (244)
Q Consensus 150 ~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (244)
...+++++..|.- |-|||.||+-|||++++ +-...-.|+ +-.+++++-..||.|+|+.. .-+--+.+--.+++
T Consensus 92 ~~~~~~tl~~a~~-lk~~~~~~~~d~~~~~~--llpga~kl~---slr~~t~~n~lN~~w~etev-~~~i~~~~~~~K~~ 164 (362)
T KOG1013|consen 92 SRMLDTTLDRAKG-LKPMDINGLADPYVKLH--LLPGAGKLN---SLRTKTTRNTLNPEWNETEV-YEGITDDDTHLKVL 164 (362)
T ss_pred hhhcceeechhcc-cchhhhhhhcchHHhhh--cccchhhhh---hhhHHhhccCcCcceeccce-ecccccchhhhhhh
Confidence 4466789999985 89999999999998854 111122222 23455566677788887532 22333444445677
Q ss_pred EEEEeccCccccc
Q 043301 230 SVEFWDLDDVLVN 242 (244)
Q Consensus 230 ~~~~~~~~~~~~~ 242 (244)
.|-|=|=|--++|
T Consensus 165 Rk~vcdn~~~~~~ 177 (362)
T KOG1013|consen 165 RKVVCDNDKKTHN 177 (362)
T ss_pred heeeccCcccccc
Confidence 7777776665554
No 155
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=91.51 E-value=0.11 Score=55.24 Aligned_cols=93 Identities=13% Similarity=0.128 Sum_probs=68.8
Q ss_pred CcEEEEEeccCCcceeeecccccccccCCCCc-chhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhh
Q 043301 141 DVELRTIQERNPEDLTFHDVFSSFTEKDRNQL-DDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILR 219 (244)
Q Consensus 141 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~n~l-~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 219 (244)
.+.+.+.-..+.+.+-|.-++. .+|..+|- -|||+++= +.+.+..+.|+|||.+-++.+|..||. .+|+
T Consensus 1514 qV~LsIsY~~~~LtImV~H~K~--L~~Lqdg~~P~pyVK~Y-----LlPdp~k~sKRKTKvvrkt~~PTfnE~---LvY~ 1583 (1639)
T KOG0905|consen 1514 QVKLSISYNNGTLTIMVMHAKG--LALLQDGQDPDPYVKTY-----LLPDPRKTSKRKTKVVRKTRNPTFNEM---LVYD 1583 (1639)
T ss_pred eEEEEEEEcCceEEEEhhhhcc--cccccCCCCCCcceeEE-----ecCCchHhhhhhhccccccCCCchhhh---eeec
Confidence 4566666678888888888875 56776665 47787733 355666669999998888999999995 5665
Q ss_pred -cC-CCCccceeEEEEeccCcccccC
Q 043301 220 -LQ-NSLRSKNMSVEFWDLDDVLVNV 243 (244)
Q Consensus 220 -~~-~~~~~~~~~~~~~~~~~~~~~~ 243 (244)
.. .-...|+|-|.||--+....||
T Consensus 1584 g~p~~~l~qReLQ~sVls~~~~~en~ 1609 (1639)
T KOG0905|consen 1584 GFPKEILQQRELQVSVLSNGGLLENV 1609 (1639)
T ss_pred CCchhhhhhheeeeeeecccceeeee
Confidence 22 3356699999999988877776
No 156
>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=89.88 E-value=0.11 Score=48.90 Aligned_cols=35 Identities=31% Similarity=0.720 Sum_probs=30.9
Q ss_pred ccccccccccCCCCC---cEEeCCCCCccccccccCCC
Q 043301 31 VVIICDICETSLQGP---AYGCGTCEFSIHKSCAELPL 65 (244)
Q Consensus 31 ~~~~C~~C~~~i~g~---~Y~C~~C~F~lH~~Ca~~p~ 65 (244)
....|.+|.+.|||. +|+|-.|.+-+|++|+.+.+
T Consensus 140 rr~~c~ic~d~iwglgrqgyrcinckl~vhkkch~~v~ 177 (593)
T KOG0695|consen 140 RRAYCGICSDRIWGLGRQGYRCINCKLLVHKKCHGLVP 177 (593)
T ss_pred cceeeeechhhhhhcccccceeecceeehhhhhccccc
Confidence 457899999999985 79999999999999998743
No 157
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=88.60 E-value=0.2 Score=52.40 Aligned_cols=72 Identities=21% Similarity=0.158 Sum_probs=47.8
Q ss_pred eeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEee-cCCCCChhhhhhhhhhcCCC-CccceeEEE
Q 043301 155 LTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTIS-ESYPYSDDTLAQFILRLQNS-LRSKNMSVE 232 (244)
Q Consensus 155 ~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 232 (244)
+-|-+|+ +|-|.|+||..|||+++.. .++.... ..- .|. .++|+..+ ||.|... -.++-|.|+
T Consensus 617 Vyvv~A~-~L~p~D~ng~adpYv~l~l----Gk~~~~d----~~~-yip~tlnPVfgk-----mfel~~~lp~ek~l~v~ 681 (1105)
T KOG1326|consen 617 VYVVEAF-SLQPSDGNGDADPYVKLLL----GKKRTLD----RAH-YIPNTLNPVFGK-----MFELECLLPFEKDLIVE 681 (1105)
T ss_pred EEEEEee-eccccCCCCCcCceeeeee----ccchhhh----hhh-cCcCCCCcHHHH-----HHHhhcccchhhcceeE
Confidence 6778888 5899999999999977540 0111110 111 222 45677776 4566655 467889999
Q ss_pred EeccCcccc
Q 043301 233 FWDLDDVLV 241 (244)
Q Consensus 233 ~~~~~~~~~ 241 (244)
|+|||..+.
T Consensus 682 vyd~D~~~~ 690 (1105)
T KOG1326|consen 682 VYDHDLEAQ 690 (1105)
T ss_pred EEEeecccc
Confidence 999998763
No 158
>cd02336 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=87.78 E-value=0.3 Score=32.46 Aligned_cols=31 Identities=23% Similarity=0.556 Sum_probs=27.3
Q ss_pred cccccccCCCCeeEEcCCc-cceeccccccCc
Q 043301 85 RCDACLDECSGMAYRCHEC-CYNLHYHCTALK 115 (244)
Q Consensus 85 ~Cd~Cg~~~~g~~Y~C~~C-d~~lH~~Ca~~p 115 (244)
.|+.||......+|+|..+ +++|++.|...-
T Consensus 2 ~C~~Cg~D~t~vryh~~~~~~~dLC~~CF~~G 33 (45)
T cd02336 2 HCFTCGNDCTRVRYHNLKAKKYDLCPSCYQEG 33 (45)
T ss_pred cccCCCCccCceEEEecCCCccccChHHHhCc
Confidence 6999999999999999977 699999998643
No 159
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=87.41 E-value=0.38 Score=51.15 Aligned_cols=71 Identities=14% Similarity=0.206 Sum_probs=46.9
Q ss_pred eeeecccccccccC--CCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEEE
Q 043301 155 LTFHDVFSSFTEKD--RNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVE 232 (244)
Q Consensus 155 ~~v~~~~~~~~~~~--~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (244)
+++..|-. |-.-| -||..|||..++ .+-...-+|+..--..||.|||+ |..=|. -.+-+|.++
T Consensus 440 vkI~sa~~-lk~~d~~i~~~vDpyit~~---------~~~r~~gkT~v~~nt~nPvwNEt---~Yi~ln--s~~d~L~Ls 504 (1227)
T COG5038 440 VKIKSAEG-LKKSDSTINGTVDPYITVT---------FSDRVIGKTRVKKNTLNPVWNET---FYILLN--SFTDPLNLS 504 (1227)
T ss_pred EEEeeccC-cccccccccCCCCceEEEE---------eccccCCccceeeccCCccccce---EEEEec--ccCCceeEE
Confidence 57777763 66666 789999997744 11122225563333678999984 654443 566789999
Q ss_pred EeccCccc
Q 043301 233 FWDLDDVL 240 (244)
Q Consensus 233 ~~~~~~~~ 240 (244)
|||.++.+
T Consensus 505 lyD~n~~~ 512 (1227)
T COG5038 505 LYDFNSFK 512 (1227)
T ss_pred EEeccccC
Confidence 99987764
No 160
>PLN02222 phosphoinositide phospholipase C 2
Probab=86.55 E-value=0.28 Score=49.05 Aligned_cols=61 Identities=20% Similarity=0.168 Sum_probs=38.0
Q ss_pred chhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEEEEeccCccccc
Q 043301 173 DDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVEFWDLDDVLVN 242 (244)
Q Consensus 173 ~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (244)
-|||++++ +.+++.. ..+++|+++..+.+|.||| +|.|.+.--+. -=|.++|||.|..+.|
T Consensus 479 ~dpyV~Ve--i~G~p~D---~~~~rTk~v~nn~nP~W~e---~f~F~i~~PeL-AllRf~V~d~D~~~~d 539 (581)
T PLN02222 479 PDFYTRVG--IAGVPGD---TVMKKTKTLEDNWIPAWDE---VFEFPLTVPEL-ALLRLEVHEYDMSEKD 539 (581)
T ss_pred CCeeEEEE--EeccCCC---cceeeeEecCCCCCcccCC---eeEEEEEcCce-eEEEEEEEECCCCCCC
Confidence 36676643 3333222 2455777444457888887 68888764332 4467899999987655
No 161
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=86.45 E-value=0.39 Score=48.55 Aligned_cols=87 Identities=22% Similarity=0.485 Sum_probs=65.7
Q ss_pred cccccccccccCCCCCcEEeCCCCCc------------cccccccCCCcCCCC-CC-CCcceEeec----Cccccccccc
Q 043301 30 DVVIICDICETSLQGPAYGCGTCEFS------------IHKSCAELPLKIDHP-FH-CHPLTLSKT----NHHRCDACLD 91 (244)
Q Consensus 30 ~~~~~C~~C~~~i~g~~Y~C~~C~F~------------lH~~Ca~~p~~i~hp-~H-~H~L~L~~~----~~~~Cd~Cg~ 91 (244)
.+++||.-|...-.-..++|+.|-+. .|..||.+.++++.. .| .-|..|... ....|-+|.+
T Consensus 46 tGpWfCrKCesqeraarvrCeLCP~kdGALKkTDn~GWAHVVCALYIPEVrFgNV~TMEPIiLq~VP~dRfnKtCYIC~E 125 (900)
T KOG0956|consen 46 TGPWFCRKCESQERAARVRCELCPHKDGALKKTDNGGWAHVVCALYIPEVRFGNVHTMEPIILQDVPHDRFNKTCYICNE 125 (900)
T ss_pred CCchhhhhhhhhhhhccceeecccCcccceecccCCCceEEEEEeeccceeecccccccceeeccCchhhhcceeeeecc
Confidence 57899999988877778999999664 799999998877655 34 445555433 4568999988
Q ss_pred CC------CCeeEEcC--CccceeccccccCcC
Q 043301 92 EC------SGMAYRCH--ECCYNLHYHCTALKP 116 (244)
Q Consensus 92 ~~------~g~~Y~C~--~Cd~~lH~~Ca~~p~ 116 (244)
.+ .|--|.|. .|.-.+|+.||...-
T Consensus 126 ~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~G 158 (900)
T KOG0956|consen 126 EGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAG 158 (900)
T ss_pred cCCccccccccceecccccchhhhhhhHhhhhc
Confidence 63 35568886 688889999997663
No 162
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=86.18 E-value=0.52 Score=43.83 Aligned_cols=85 Identities=25% Similarity=0.485 Sum_probs=53.1
Q ss_pred cccccccccccCCCCCcEEeCCCCCccc------cccccCCCcC----CCCCCCCcceEeec-------Cccccccc-cc
Q 043301 30 DVVIICDICETSLQGPAYGCGTCEFSIH------KSCAELPLKI----DHPFHCHPLTLSKT-------NHHRCDAC-LD 91 (244)
Q Consensus 30 ~~~~~C~~C~~~i~g~~Y~C~~C~F~lH------~~Ca~~p~~i----~hp~H~H~L~L~~~-------~~~~Cd~C-g~ 91 (244)
+.+.+| +|-..+.|.+|.|.+|.-.++ +.|-..-... +.-.|--||+.+.. ...+|-+| +.
T Consensus 261 ~~ps~C-~CH~~~~~~Gy~CP~CkakvCsLP~eCpiC~ltLVss~hLARSyhhL~PL~~F~Eip~~~~~~~~~Cf~C~~~ 339 (378)
T KOG2807|consen 261 DTPSFC-ACHSELSGGGYFCPQCKAKVCSLPIECPICSLTLVSSPHLARSYHHLFPLKPFVEIPETEYNGSRFCFACQGE 339 (378)
T ss_pred cCcchh-eeccccccCceeCCcccCeeecCCccCCccceeEecchHHHHHHHhhcCCcchhhccccccCCCcceeeeccc
Confidence 456677 466777899999998865444 3332210001 11123345555443 44569999 44
Q ss_pred CCCCeeEEcCCccceeccccccCc
Q 043301 92 ECSGMAYRCHECCYNLHYHCTALK 115 (244)
Q Consensus 92 ~~~g~~Y~C~~Cd~~lH~~Ca~~p 115 (244)
...+-+|+|..|.-.++..|-.+.
T Consensus 340 ~~~~~~y~C~~Ck~~FCldCDv~i 363 (378)
T KOG2807|consen 340 LLSSGRYRCESCKNVFCLDCDVFI 363 (378)
T ss_pred cCCCCcEEchhccceeeccchHHH
Confidence 566778999999988888886544
No 163
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=85.91 E-value=0.74 Score=35.46 Aligned_cols=79 Identities=20% Similarity=0.407 Sum_probs=52.6
Q ss_pred cccccccCCCCCcEEeCCCCCccccccccCCCcCCC--CCCCCcceEe---ec-CcccccccccCCCCeeEEcCC--ccc
Q 043301 34 ICDICETSLQGPAYGCGTCEFSIHKSCAELPLKIDH--PFHCHPLTLS---KT-NHHRCDACLDECSGMAYRCHE--CCY 105 (244)
Q Consensus 34 ~C~~C~~~i~g~~Y~C~~C~F~lH~~Ca~~p~~i~h--p~H~H~L~L~---~~-~~~~Cd~Cg~~~~g~~Y~C~~--Cd~ 105 (244)
.|-+|... |..++-..-+-.+|..||..-+.+.. ....-+..+. .. ....|..|++. .|...+|.. |..
T Consensus 2 ~C~lC~~~--~Galk~t~~~~WvHv~Cal~~~~~~~~~~~~~~~v~~~~i~~~~~~~~C~iC~~~-~G~~i~C~~~~C~~ 78 (110)
T PF13832_consen 2 SCVLCPKR--GGALKRTSDGQWVHVLCALWIPEVIFNNGESMEPVDISNIPPSRFKLKCSICGKS-GGACIKCSHPGCST 78 (110)
T ss_pred ccEeCCCC--CCcccCccCCcEEEeEccceeCccEEeechhcCcccceeecchhcCCcCcCCCCC-CceeEEcCCCCCCc
Confidence 47778764 33445545577899999997543321 1111111111 11 47899999998 678899997 999
Q ss_pred eeccccccCc
Q 043301 106 NLHYHCTALK 115 (244)
Q Consensus 106 ~lH~~Ca~~p 115 (244)
.+|+.||...
T Consensus 79 ~fH~~CA~~~ 88 (110)
T PF13832_consen 79 AFHPTCARKA 88 (110)
T ss_pred CCCHHHHHHC
Confidence 9999999765
No 164
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=85.20 E-value=0.72 Score=47.07 Aligned_cols=64 Identities=23% Similarity=0.324 Sum_probs=43.0
Q ss_pred CCcchhhHHHHhhhhcccccccccCCCCceeEee-cCCCCChhhhhhhhhhcCCCCccceeEEEEeccCccccc
Q 043301 170 NQLDDITENIESEIAGIKKTLSETGDQGSKVTIS-ESYPYSDDTLAQFILRLQNSLRSKNMSVEFWDLDDVLVN 242 (244)
Q Consensus 170 n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (244)
+..+||++.++ +.+++. ....++|+++-- .-+|.|+| +|.|.|.--+.. =+.++|||-|-.+.|
T Consensus 638 ~~~~dP~v~Ve--I~Gvp~---D~~~~~Tk~v~~NgfnP~W~e---~f~F~l~vPELA-liRF~V~d~d~~~~d 702 (746)
T KOG0169|consen 638 GEISDPDVYVE--IAGVPA---DCAEQKTKVVKNNGFNPIWDE---EFEFQLSVPELA-LIRFEVHDYDYIGKD 702 (746)
T ss_pred cccCCCCEEEE--Eccccc---chhhhhceeeccCCcCcccCC---eEEEEEecccee-EEEEEEEecCCCCcc
Confidence 35789988766 444443 345677773322 44677777 799998765543 467899999988765
No 165
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=85.19 E-value=0.63 Score=47.22 Aligned_cols=83 Identities=14% Similarity=0.115 Sum_probs=51.3
Q ss_pred cCCcceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCC------
Q 043301 150 RNPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNS------ 223 (244)
Q Consensus 150 ~~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~------ 223 (244)
...+.|.+-.+. -+.|.+-+| +||++...-. -.... ...+|+....+.+|.|+| .|.|++..+
T Consensus 130 ~~~~~c~~L~~r-~~~P~~~~~-~dp~~~v~~~----g~~~~--~~~~T~~~kkt~~p~~~E---v~~f~~~~~~~~s~k 198 (800)
T KOG2059|consen 130 SSGLVCHVLKTR-QGLPIINGQ-CDPFARVTLC----GPSKL--KEKKTKVKKKTTNPQFDE---VFYFEVTREESYSKK 198 (800)
T ss_pred CCcchhhhhhhc-ccCceeCCC-CCcceEEeec----ccchh--hccccceeeeccCcchhh---heeeeeccccccccc
Confidence 445556666665 478888666 9997552200 00111 114556556677888888 699988776
Q ss_pred --------CccceeEEEEec-cCcccccC
Q 043301 224 --------LRSKNMSVEFWD-LDDVLVNV 243 (244)
Q Consensus 224 --------~~~~~~~~~~~~-~~~~~~~~ 243 (244)
+---.+.|++|| |+....||
T Consensus 199 s~~~~~~e~~~l~irv~lW~~~~~~~~~~ 227 (800)
T KOG2059|consen 199 SLFMPEEEDDMLEIRVDLWNDLNLVINDV 227 (800)
T ss_pred hhcCcccCCceeeEEEeeccchhhhhhhh
Confidence 112457789999 77766555
No 166
>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]
Probab=84.99 E-value=0.54 Score=47.14 Aligned_cols=36 Identities=25% Similarity=0.598 Sum_probs=31.0
Q ss_pred cccccccccccCCCCCcEEeCCCCCccccccccCCC
Q 043301 30 DVVIICDICETSLQGPAYGCGTCEFSIHKSCAELPL 65 (244)
Q Consensus 30 ~~~~~C~~C~~~i~g~~Y~C~~C~F~lH~~Ca~~p~ 65 (244)
....+|+.|..+++-.+++|+.|+|.+|.+|+...+
T Consensus 187 ~~~~fC~~~~~~~l~~gfrC~~C~~KfHq~Cs~~vp 222 (678)
T KOG0193|consen 187 FPLAFCDSCCNKFLFTGFRCQTCGYKFHQSCSPRVP 222 (678)
T ss_pred cchhhhhhhcchhhhcccccCCCCCccccccCCCCC
Confidence 446789988888888899999999999999998654
No 167
>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]
Probab=84.49 E-value=0.32 Score=48.47 Aligned_cols=45 Identities=24% Similarity=0.600 Sum_probs=39.5
Q ss_pred CCcceEeec-CcccccccccCCCCe---eEEcCCccceeccccccCcCc
Q 043301 73 CHPLTLSKT-NHHRCDACLDECSGM---AYRCHECCYNLHYHCTALKPS 117 (244)
Q Consensus 73 ~H~L~L~~~-~~~~Cd~Cg~~~~g~---~Y~C~~Cd~~lH~~Ca~~p~~ 117 (244)
.|.++.++. .++.|++|...+.|. +|+|..|+..+|+.|....|+
T Consensus 523 ~H~fqmhtF~~~tsCkvC~mllrGtfYQGY~C~~c~~~ahkecl~~vp~ 571 (865)
T KOG2996|consen 523 NHDFQMHTFKNTTSCKVCQMLLRGTFYQGYKCEKCGADAHKECLGRVPP 571 (865)
T ss_pred CcceEEEeccCCcchHHHHHHhhhhhhcceeeeeccccHHHHhccCCCC
Confidence 789999887 889999999988875 589999999999999877654
No 168
>PLN02230 phosphoinositide phospholipase C 4
Probab=84.25 E-value=0.44 Score=47.78 Aligned_cols=61 Identities=20% Similarity=0.164 Sum_probs=37.6
Q ss_pred chhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeEEEEeccCccccc
Q 043301 173 DDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMSVEFWDLDDVLVN 242 (244)
Q Consensus 173 ~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (244)
-|||++++ +.+++.. ..+++|++.-...+|.||| +|.|.|.--+. -=|.|+|||.|.+++|
T Consensus 496 ~DpyV~Ve--i~Gvp~D---~~~~kT~v~~n~~nP~Wne---ef~F~l~vPEL-AllRf~V~d~d~~~~d 556 (598)
T PLN02230 496 PDFFVRVG--IAGAPVD---EVMEKTKIEYDTWTPIWNK---EFIFPLAVPEL-ALLRVEVHEHDINEKD 556 (598)
T ss_pred CCceEEEE--EEECCCC---CcccceeccCCCCCCccCC---eeEEEEEcCce-eEEEEEEEECCCCCCC
Confidence 47777754 3343321 2345666332356788887 69888775332 4567899999987765
No 169
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=84.17 E-value=0.41 Score=48.82 Aligned_cols=34 Identities=21% Similarity=0.547 Sum_probs=30.0
Q ss_pred Cccccccccc-CCCCeeEEcCCc-cceeccccccCc
Q 043301 82 NHHRCDACLD-ECSGMAYRCHEC-CYNLHYHCTALK 115 (244)
Q Consensus 82 ~~~~Cd~Cg~-~~~g~~Y~C~~C-d~~lH~~Ca~~p 115 (244)
....|++|++ .+.|++|+|..| +++++..|+..-
T Consensus 602 H~~kCniCk~~pIvG~RyR~l~~fn~dlCq~CF~sg 637 (966)
T KOG4286|consen 602 HQAKCNICKECPIIGFRYRSLKHFNYDICQSCFFSG 637 (966)
T ss_pred hhhhcchhhhCccceeeeeehhhcChhHHhhHhhhc
Confidence 5679999999 489999999999 899999998643
No 170
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=83.23 E-value=0.69 Score=46.93 Aligned_cols=71 Identities=11% Similarity=0.211 Sum_probs=50.7
Q ss_pred cceeeecccccccccCCCCcchhhHH--HHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCCCccceeE
Q 043301 153 EDLTFHDVFSSFTEKDRNQLDDITEN--IESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNSLRSKNMS 230 (244)
Q Consensus 153 ~~~~v~~~~~~~~~~~~n~l~d~~~~--~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (244)
+.+.|+||+| |-+.++.|.+|||-. +.+|. --.|.++-+++-|.|-| .|.|.|-.. =|-|+
T Consensus 7 l~vki~E~kn-L~~~~~~g~~D~yC~v~lD~E~-----------v~RT~tv~ksL~PF~gE---e~~~~iP~~--F~~l~ 69 (800)
T KOG2059|consen 7 LKVKIGEAKN-LPSYGPSGMRDCYCTVNLDQEE-----------VCRTATVEKSLCPFFGE---EFYFEIPRT--FRYLS 69 (800)
T ss_pred eeEEEeeccc-CCCCCCCCCcCcceEEeecchh-----------hhhhhhhhhhcCCcccc---ceEEecCcc--eeeEE
Confidence 4578999985 888899999999844 33321 11244344566688988 698887654 36799
Q ss_pred EEEeccCcccc
Q 043301 231 VEFWDLDDVLV 241 (244)
Q Consensus 231 ~~~~~~~~~~~ 241 (244)
+-|||=| .+|
T Consensus 70 fYv~D~d-~~~ 79 (800)
T KOG2059|consen 70 FYVWDRD-LKR 79 (800)
T ss_pred EEEeccc-ccc
Confidence 9999988 555
No 171
>PLN02223 phosphoinositide phospholipase C
Probab=82.87 E-value=0.57 Score=46.37 Aligned_cols=60 Identities=20% Similarity=0.224 Sum_probs=35.1
Q ss_pred chhhHHHHhhhhcccccccccCCCCceeEee-cCCCCChhhhhhhhhhcCCCCccceeEEEEeccCccccc
Q 043301 173 DDITENIESEIAGIKKTLSETGDQGSKVTIS-ESYPYSDDTLAQFILRLQNSLRSKNMSVEFWDLDDVLVN 242 (244)
Q Consensus 173 ~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (244)
-|||++++ +.+++.. ..+++|+ ++. ..||.||| +|.|.+.--+. -=|.|+|||.|.++.|
T Consensus 435 ~DpyV~Ve--I~Gvp~D---~~~~kT~-v~nNg~nPvWne---~F~F~i~~PEL-AlLrf~V~D~D~~~~d 495 (537)
T PLN02223 435 PDLYVRIS--IAGVPHD---EKIMKTT-VKNNEWKPTWGE---EFTFPLTYPDL-ALISFEVYDYEVSTAD 495 (537)
T ss_pred CCeEEEEE--EeeccCC---cceeEEE-eCCCCcCceecc---eeEEEEEccCc-eEEEEEEEecCCCCCC
Confidence 46786644 3343332 1223332 333 35677776 69998865442 2357899999987764
No 172
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=81.56 E-value=0.74 Score=44.18 Aligned_cols=45 Identities=22% Similarity=0.531 Sum_probs=34.6
Q ss_pred CcccccccccCCCCee-EEcCCc-cceeccccccCcCccccCccccCCcC
Q 043301 82 NHHRCDACLDECSGMA-YRCHEC-CYNLHYHCTALKPSINFKELKCVLHE 129 (244)
Q Consensus 82 ~~~~Cd~Cg~~~~g~~-Y~C~~C-d~~lH~~Ca~~p~~i~~~~~~h~~H~ 129 (244)
....|+.|...+.|.. .+|.+| +|+++..|+..-..+ +..+..|+
T Consensus 13 ~ky~C~~C~~dit~~i~ikCaeCp~fdLCl~CFs~GaE~---~~H~~~H~ 59 (438)
T KOG0457|consen 13 GKYNCDYCSLDITGLIRIKCAECPDFDLCLQCFSVGAET---GKHQNDHP 59 (438)
T ss_pred CCCCCccHhHHhccceEEEeecCCCcchhHHHHhccccc---CCCCCCCC
Confidence 3578999999998876 999999 599999999866443 33444454
No 173
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=81.01 E-value=1.5 Score=28.81 Aligned_cols=32 Identities=28% Similarity=0.685 Sum_probs=26.6
Q ss_pred cccccccCC-CCCcEEeCCCCCccccccccCCC
Q 043301 34 ICDICETSL-QGPAYGCGTCEFSIHKSCAELPL 65 (244)
Q Consensus 34 ~C~~C~~~i-~g~~Y~C~~C~F~lH~~Ca~~p~ 65 (244)
+|..|+... .+..-.|..|+-.+|..|...+.
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~ 33 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPE 33 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCCh
Confidence 478888854 45789999999999999998764
No 174
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=80.20 E-value=1 Score=45.09 Aligned_cols=79 Identities=15% Similarity=0.248 Sum_probs=51.9
Q ss_pred CCcceeeecccccccccCC-CCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhhcCCC-Cccce
Q 043301 151 NPEDLTFHDVFSSFTEKDR-NQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILRLQNS-LRSKN 228 (244)
Q Consensus 151 ~~~~~~v~~~~~~~~~~~~-n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~ 228 (244)
+++.+.+.-++ +|--||+ ..|.|-.+++| +..+ --||-+..+++||.||. +-|.|.++.. ..|.-
T Consensus 3 gkl~vki~a~r-~lpvmdkasd~tdafveik---------~~n~-t~ktdvf~kslnp~wns--dwfkfevddadlqdep 69 (1169)
T KOG1031|consen 3 GKLGVKIKAAR-HLPVMDKASDLTDAFVEIK---------FANT-TFKTDVFLKSLNPQWNS--DWFKFEVDDADLQDEP 69 (1169)
T ss_pred CcceeEEEecc-CCcccccccccchheeEEE---------eccc-ceehhhhhhhcCCcccc--cceEEecChhhhccCC
Confidence 34556677776 4777884 44555554433 2222 22344456688888984 2388888766 46788
Q ss_pred eEEEEeccCccccc
Q 043301 229 MSVEFWDLDDVLVN 242 (244)
Q Consensus 229 ~~~~~~~~~~~~~~ 242 (244)
|.|.+-|.|--|.|
T Consensus 70 lqi~lld~dtysan 83 (1169)
T KOG1031|consen 70 LQIRLLDHDTYSAN 83 (1169)
T ss_pred eeEEEecccccccc
Confidence 99999999998877
No 175
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=79.25 E-value=1.2 Score=43.82 Aligned_cols=81 Identities=25% Similarity=0.539 Sum_probs=49.7
Q ss_pred cccccccc-CC--CCCcEEeCCCCCccccccccCCCcCCCCCCCCcceEeecCcccccccccCCCCeeEEcCCc------
Q 043301 33 IICDICET-SL--QGPAYGCGTCEFSIHKSCAELPLKIDHPFHCHPLTLSKTNHHRCDACLDECSGMAYRCHEC------ 103 (244)
Q Consensus 33 ~~C~~C~~-~i--~g~~Y~C~~C~F~lH~~Ca~~p~~i~hp~H~H~L~L~~~~~~~Cd~Cg~~~~g~~Y~C~~C------ 103 (244)
..|-.|-. .+ .|-+.+|+.|+..||+.|...-....-++..-. -+..+++|++|.-.+.- =.|.-|
T Consensus 120 ~iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~---~stepWfCeaC~~Gvs~--P~CElCPn~~Gi 194 (707)
T KOG0957|consen 120 VICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSD---CSTEPWFCEACLYGVSL--PHCELCPNRFGI 194 (707)
T ss_pred eEEEEeecCccccccceeeccccCceecccccccccccccCCCCcc---CCCCchhhhhHhcCCCC--CccccCCCcCCc
Confidence 46888843 33 367999999999999999875322111111000 01157899998654321 344444
Q ss_pred ------cceeccccccCcCcc
Q 043301 104 ------CYNLHYHCTALKPSI 118 (244)
Q Consensus 104 ------d~~lH~~Ca~~p~~i 118 (244)
+-.+|..||..+|-+
T Consensus 195 fKetDigrWvH~iCALYvpGV 215 (707)
T KOG0957|consen 195 FKETDIGRWVHAICALYVPGV 215 (707)
T ss_pred ccccchhhHHHHHHHhhcCcc
Confidence 234899999888654
No 176
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=78.20 E-value=1.6 Score=41.95 Aligned_cols=51 Identities=22% Similarity=0.486 Sum_probs=38.6
Q ss_pred ccccccccccCCCCCc-EEeCCCC-CccccccccCCCcCCCCCCCCcceEeec
Q 043301 31 VVIICDICETSLQGPA-YGCGTCE-FSIHKSCAELPLKIDHPFHCHPLTLSKT 81 (244)
Q Consensus 31 ~~~~C~~C~~~i~g~~-Y~C~~C~-F~lH~~Ca~~p~~i~hp~H~H~L~L~~~ 81 (244)
+...|+.|...|.|.. .+|++|- |+|+..|......+.-..-.|+..+...
T Consensus 13 ~ky~C~~C~~dit~~i~ikCaeCp~fdLCl~CFs~GaE~~~H~~~H~Yrim~~ 65 (438)
T KOG0457|consen 13 GKYNCDYCSLDITGLIRIKCAECPDFDLCLQCFSVGAETGKHQNDHPYRIMDT 65 (438)
T ss_pred CCCCCccHhHHhccceEEEeecCCCcchhHHHHhcccccCCCCCCCCceeecC
Confidence 4678999999999865 9999995 9999999876554422122688777654
No 177
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=77.55 E-value=1.5 Score=30.28 Aligned_cols=34 Identities=21% Similarity=0.475 Sum_probs=29.7
Q ss_pred ccccccccccCC--CCCcEEeCCCCCccccccccCC
Q 043301 31 VVIICDICETSL--QGPAYGCGTCEFSIHKSCAELP 64 (244)
Q Consensus 31 ~~~~C~~C~~~i--~g~~Y~C~~C~F~lH~~Ca~~p 64 (244)
....|..|++.+ .+-.-.|..|+=..|..|.+..
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~~ 39 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEKA 39 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhhC
Confidence 457999999999 5689999999999999999753
No 178
>cd02336 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=76.52 E-value=1.5 Score=29.06 Aligned_cols=30 Identities=17% Similarity=0.334 Sum_probs=26.6
Q ss_pred cccccccCCCCCcEEeCCC-CCccccccccC
Q 043301 34 ICDICETSLQGPAYGCGTC-EFSIHKSCAEL 63 (244)
Q Consensus 34 ~C~~C~~~i~g~~Y~C~~C-~F~lH~~Ca~~ 63 (244)
.|+.|+..+....|+|..+ +++|+..|..-
T Consensus 2 ~C~~Cg~D~t~vryh~~~~~~~dLC~~CF~~ 32 (45)
T cd02336 2 HCFTCGNDCTRVRYHNLKAKKYDLCPSCYQE 32 (45)
T ss_pred cccCCCCccCceEEEecCCCccccChHHHhC
Confidence 5999999998899999988 49999999864
No 179
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=76.47 E-value=3.2 Score=27.26 Aligned_cols=32 Identities=22% Similarity=0.501 Sum_probs=26.6
Q ss_pred cccccccC-CCCeeEEcCCccceeccccccCcC
Q 043301 85 RCDACLDE-CSGMAYRCHECCYNLHYHCTALKP 116 (244)
Q Consensus 85 ~Cd~Cg~~-~~g~~Y~C~~Cd~~lH~~Ca~~p~ 116 (244)
+|.+|++. -.+....|..|+-.+|..|+..+.
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~ 33 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPE 33 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCCh
Confidence 47888884 456789999999999999998773
No 180
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=75.73 E-value=1.2 Score=32.49 Aligned_cols=52 Identities=29% Similarity=0.670 Sum_probs=30.1
Q ss_pred cccccccCC--CCCcEEeCCCC--CccccccccCCCcCCCCCCCCcceEeec---CcccccccccCCC
Q 043301 34 ICDICETSL--QGPAYGCGTCE--FSIHKSCAELPLKIDHPFHCHPLTLSKT---NHHRCDACLDECS 94 (244)
Q Consensus 34 ~C~~C~~~i--~g~~Y~C~~C~--F~lH~~Ca~~p~~i~hp~H~H~L~L~~~---~~~~Cd~Cg~~~~ 94 (244)
.|-.|..++ .|..|+|..|+ |.+...|-+- ..+|..... ..++|+.|..+++
T Consensus 3 ~CP~C~~~L~~~~~~~~C~~C~~~~~~~a~CPdC---------~~~Le~LkACGAvdYFC~~c~gLiS 61 (70)
T PF07191_consen 3 TCPKCQQELEWQGGHYHCEACQKDYKKEAFCPDC---------GQPLEVLKACGAVDYFCNHCHGLIS 61 (70)
T ss_dssp B-SSS-SBEEEETTEEEETTT--EEEEEEE-TTT----------SB-EEEEETTEEEEE-TTTT-EE-
T ss_pred cCCCCCCccEEeCCEEECccccccceecccCCCc---------ccHHHHHHHhcccceeeccCCceee
Confidence 578888887 35689999995 6666666432 345666554 4678888877653
No 181
>PLN02228 Phosphoinositide phospholipase C
Probab=75.15 E-value=1.1 Score=44.69 Aligned_cols=61 Identities=21% Similarity=0.333 Sum_probs=37.6
Q ss_pred chhhHHHHhhhhcccccccccCCCCceeEeecCCCCC-hhhhhhhhhhcCCCCccceeEEEEeccCccccc
Q 043301 173 DDITENIESEIAGIKKTLSETGDQGSKVTISESYPYS-DDTLAQFILRLQNSLRSKNMSVEFWDLDDVLVN 242 (244)
Q Consensus 173 ~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (244)
-|||++++ +.+++.. ..+.+|++.-.+.+|.| || .|.|.+.-.+.. =|.++|||.|.++.+
T Consensus 458 ~DpyV~Ve--i~G~p~D---~~~~rTk~~~n~~nP~W~~e---~f~F~~~~pELA-~lRf~V~D~d~~~~d 519 (567)
T PLN02228 458 PDFFVKIG--IAGVPRD---TVSYRTETAVDQWFPIWGND---EFLFQLRVPELA-LLWFKVQDYDNDTQN 519 (567)
T ss_pred CCcEEEEE--EEecCCC---CCcceeeccCCCCCceECCC---eEEEEEEcCcee-EEEEEEEeCCCCCCC
Confidence 57787654 3443322 24457773322467888 65 688887654433 567799999977655
No 182
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=74.79 E-value=1.3 Score=45.40 Aligned_cols=34 Identities=24% Similarity=0.423 Sum_probs=29.2
Q ss_pred ccccccccc-CCCCCcEEeCCC-CCccccccccCCC
Q 043301 32 VIICDICET-SLQGPAYGCGTC-EFSIHKSCAELPL 65 (244)
Q Consensus 32 ~~~C~~C~~-~i~g~~Y~C~~C-~F~lH~~Ca~~p~ 65 (244)
...|++|+. +|-|+.|+|..| +++++..|.....
T Consensus 603 ~~kCniCk~~pIvG~RyR~l~~fn~dlCq~CF~sgr 638 (966)
T KOG4286|consen 603 QAKCNICKECPIIGFRYRSLKHFNYDICQSCFFSGR 638 (966)
T ss_pred hhhcchhhhCccceeeeeehhhcChhHHhhHhhhcc
Confidence 468999976 689999999999 8999999987544
No 183
>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]
Probab=74.39 E-value=1.9 Score=43.42 Aligned_cols=37 Identities=27% Similarity=0.712 Sum_probs=31.3
Q ss_pred CcccccccccCCCCeeEEcCCccceeccccccCcCcc
Q 043301 82 NHHRCDACLDECSGMAYRCHECCYNLHYHCTALKPSI 118 (244)
Q Consensus 82 ~~~~Cd~Cg~~~~g~~Y~C~~Cd~~lH~~Ca~~p~~i 118 (244)
...+|+.|+..+..-.++|..|+|.+|.+|...+|..
T Consensus 188 ~~~fC~~~~~~~l~~gfrC~~C~~KfHq~Cs~~vp~~ 224 (678)
T KOG0193|consen 188 PLAFCDSCCNKFLFTGFRCQTCGYKFHQSCSPRVPTS 224 (678)
T ss_pred chhhhhhhcchhhhcccccCCCCCccccccCCCCCCC
Confidence 5678997777665667899999999999999988877
No 184
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=72.58 E-value=2.2 Score=32.52 Aligned_cols=34 Identities=9% Similarity=0.248 Sum_probs=26.1
Q ss_pred CCChhhhhhhhhhcCCCCccceeEEEEeccCcccc
Q 043301 207 PYSDDTLAQFILRLQNSLRSKNMSVEFWDLDDVLV 241 (244)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (244)
+.||||+ +|-.+++.=-++-||.+.|||-..+++
T Consensus 62 ~~Wnewl-~f~i~i~~LPr~a~L~~~i~~~~~~~~ 95 (100)
T smart00142 62 VKWNEWL-TFPIQISDLPREARLCITIYEVKNPSK 95 (100)
T ss_pred cccceeE-EccCchhcCChhhEEEEEEEEeeCCcc
Confidence 6799995 466666666788999999999665544
No 185
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=70.72 E-value=1.2 Score=43.10 Aligned_cols=90 Identities=23% Similarity=0.467 Sum_probs=52.4
Q ss_pred ccccccccCCCCCcEEeCCCCCccccccccCCCcCCCCCCCCcceEeec-------Cccccccccc-CCCCeeEEcCCcc
Q 043301 33 IICDICETSLQGPAYGCGTCEFSIHKSCAELPLKIDHPFHCHPLTLSKT-------NHHRCDACLD-ECSGMAYRCHECC 104 (244)
Q Consensus 33 ~~C~~C~~~i~g~~Y~C~~C~F~lH~~Ca~~p~~i~hp~H~H~L~L~~~-------~~~~Cd~Cg~-~~~g~~Y~C~~Cd 104 (244)
..|..|...-...-..|++|+.+++.-|...--..+-|.-+|.|..... ++..-.-|-. .+.|..++|..|.
T Consensus 163 ~kcqlce~a~k~a~v~ceqcdv~yc~pc~~~~hp~rgplakh~l~~~~~grvs~~~s~r~~~~ct~h~~e~~smyc~~ck 242 (699)
T KOG4367|consen 163 LKCQLCEKAPKEATVMCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPPAQGRVSRRLSPRKVSTCTDHELENHSMYCVQCK 242 (699)
T ss_pred hhhhhhcCChhhhhhhHhhCceEEechHHhccCCCCCchhhcccCCcccCceeeccchhhhhhccCCCCCCceEEEEecC
Confidence 4566665543333345666776666655432111222333555433221 3344444544 4678889999999
Q ss_pred ceeccccccCcCccccCccccCCcCc
Q 043301 105 YNLHYHCTALKPSINFKELKCVLHEV 130 (244)
Q Consensus 105 ~~lH~~Ca~~p~~i~~~~~~h~~H~h 130 (244)
+-++.+|.. +.+|.+|..
T Consensus 243 ~pvc~~cle--------e~khs~hev 260 (699)
T KOG4367|consen 243 MPVCYQCLE--------EGKHSSHEV 260 (699)
T ss_pred ChHHHHHHH--------hhcccchhh
Confidence 999999974 557888873
No 186
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=70.05 E-value=1.1 Score=33.20 Aligned_cols=35 Identities=29% Similarity=0.674 Sum_probs=16.7
Q ss_pred cccccccccccCC----CC-CcEEeCCCCCccccccccCC
Q 043301 30 DVVIICDICETSL----QG-PAYGCGTCEFSIHKSCAELP 64 (244)
Q Consensus 30 ~~~~~C~~C~~~i----~g-~~Y~C~~C~F~lH~~Ca~~p 64 (244)
.....|.+||+.| .| .+-.|.+|+|-++..|.++-
T Consensus 7 ~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYE 46 (80)
T PF14569_consen 7 LNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYE 46 (80)
T ss_dssp -SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHH
T ss_pred cCCcccccccCccccCCCCCEEEEEcccCCccchhHHHHH
Confidence 3457899999997 24 58899999999999998863
No 187
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=69.61 E-value=2.7 Score=29.09 Aligned_cols=34 Identities=21% Similarity=0.431 Sum_probs=29.5
Q ss_pred CcccccccccCC--CCeeEEcCCccceeccccccCc
Q 043301 82 NHHRCDACLDEC--SGMAYRCHECCYNLHYHCTALK 115 (244)
Q Consensus 82 ~~~~Cd~Cg~~~--~g~~Y~C~~Cd~~lH~~Ca~~p 115 (244)
....|..||+.+ .+-...|..|+--.|..|....
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~~ 39 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEKA 39 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHhhC
Confidence 356899999998 6789999999999999998654
No 188
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=69.48 E-value=1.6 Score=27.43 Aligned_cols=21 Identities=29% Similarity=0.755 Sum_probs=14.0
Q ss_pred CcEEeCCCCCccccccccCCC
Q 043301 45 PAYGCGTCEFSIHKSCAELPL 65 (244)
Q Consensus 45 ~~Y~C~~C~F~lH~~Ca~~p~ 65 (244)
...+|+.|+..+|..|.....
T Consensus 3 ~ll~C~~C~v~VH~~CYGv~~ 23 (36)
T PF13831_consen 3 PLLFCDNCNVAVHQSCYGVSE 23 (36)
T ss_dssp EEEE-SSS--EEEHHHHT-SS
T ss_pred ceEEeCCCCCcCChhhCCccc
Confidence 357899999999999987643
No 189
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PLN02964 phosphatidylserine decarboxylase
Probab=68.64 E-value=3.1 Score=42.28 Aligned_cols=36 Identities=11% Similarity=0.109 Sum_probs=25.0
Q ss_pred cCCCCChhhhhhhhhhcCCCCccceeEEEEeccCcccccC
Q 043301 204 ESYPYSDDTLAQFILRLQNSLRSKNMSVEFWDLDDVLVNV 243 (244)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (244)
+.+|.||+. -.|.+-+...-- ..+-|||||+.|-|-
T Consensus 90 ~~~p~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~s~n~ 125 (644)
T PLN02964 90 TDKPVWNSE---KKLLLEKNGPHL-ARISVFETNRLSKNT 125 (644)
T ss_pred cCCcccchh---hceEeccCCcce-EEEEEEecCCCCHHH
Confidence 556778884 444455554444 488999999999874
No 191
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=65.01 E-value=3.2 Score=38.69 Aligned_cols=44 Identities=20% Similarity=0.498 Sum_probs=35.3
Q ss_pred cccccccccCCCC-eeEEcCCc-cceeccccccCcCccccCccccCCcC
Q 043301 83 HHRCDACLDECSG-MAYRCHEC-CYNLHYHCTALKPSINFKELKCVLHE 129 (244)
Q Consensus 83 ~~~Cd~Cg~~~~g-~~Y~C~~C-d~~lH~~Ca~~p~~i~~~~~~h~~H~ 129 (244)
...||+|...... .+-+|.+| +|+++..|...-.+. +..|++|+
T Consensus 5 k~hCdvC~~d~T~~~~i~C~eC~~~DLC~pCF~~g~~t---g~H~pyH~ 50 (432)
T COG5114 5 KIHCDVCFLDMTDLTFIKCNECPAVDLCLPCFVNGIET---GVHSPYHG 50 (432)
T ss_pred eeeehHHHHhhhcceeeeeecccccceehhhhhccccc---cccCCCCC
Confidence 4579999997654 46899999 999999999877553 66777887
No 193
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=61.44 E-value=6.4 Score=22.73 Aligned_cols=20 Identities=25% Similarity=0.896 Sum_probs=14.6
Q ss_pred ccccccCCC----CCcEEeCCCCC
Q 043301 35 CDICETSLQ----GPAYGCGTCEF 54 (244)
Q Consensus 35 C~~C~~~i~----g~~Y~C~~C~F 54 (244)
|.-|+..|. +..|.|..|+|
T Consensus 1 C~sC~~~i~~r~~~v~f~CPnCG~ 24 (24)
T PF07754_consen 1 CTSCGRPIAPREQAVPFPCPNCGF 24 (24)
T ss_pred CccCCCcccCcccCceEeCCCCCC
Confidence 566777763 45799999986
No 195
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=60.12 E-value=6.5 Score=29.44 Aligned_cols=32 Identities=22% Similarity=0.542 Sum_probs=23.5
Q ss_pred ccccccccccCCCCCcEEeCCCCCcccccccc
Q 043301 31 VVIICDICETSLQGPAYGCGTCEFSIHKSCAE 62 (244)
Q Consensus 31 ~~~~C~~C~~~i~g~~Y~C~~C~F~lH~~Ca~ 62 (244)
....|..|+.++....+.=.-|+-.+|..|+.
T Consensus 77 ~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 35679999999965433333567889999974
No 196
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=58.48 E-value=3.4 Score=38.90 Aligned_cols=34 Identities=24% Similarity=0.627 Sum_probs=28.2
Q ss_pred ccccccccccc-CCCCCcEEeCCC-CCccccccccC
Q 043301 30 DVVIICDICET-SLQGPAYGCGTC-EFSIHKSCAEL 63 (244)
Q Consensus 30 ~~~~~C~~C~~-~i~g~~Y~C~~C-~F~lH~~Ca~~ 63 (244)
.-+..|++|.. ++-|+.|+|+.| ++.++..|.--
T Consensus 238 ~hpv~cs~c~srs~~gfry~cq~C~nyqlcq~cfwr 273 (434)
T KOG4301|consen 238 FHPVECSYCRSRSMMGFRYRCQQCHNYQLCQQCFWR 273 (434)
T ss_pred CCCccCcceecccccchhhhHhhcCCccccchhhcc
Confidence 44678999965 468999999999 69999999753
No 197
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=57.00 E-value=6.4 Score=32.81 Aligned_cols=33 Identities=12% Similarity=0.221 Sum_probs=23.3
Q ss_pred CCCCChhhhhhhhhhcCCCCccceeEEEEeccCc
Q 043301 205 SYPYSDDTLAQFILRLQNSLRSKNMSVEFWDLDD 238 (244)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (244)
..+.|||| -+|-.+++.=-++-||.|.|||-..
T Consensus 53 ~~~~WnEw-L~fpI~i~dLPr~ArL~iti~~~~~ 85 (158)
T cd08398 53 SNPRWNEW-LDYDIYIPDLPRSARLCLSICSVKG 85 (158)
T ss_pred CCCcccee-EEcccchhcCChhheEEEEEEEEec
Confidence 45789998 2344445555677899999999654
No 198
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=56.47 E-value=9.1 Score=28.62 Aligned_cols=32 Identities=19% Similarity=0.561 Sum_probs=22.8
Q ss_pred CcccccccccCCCCeeEEcCCccceecccccc
Q 043301 82 NHHRCDACLDECSGMAYRCHECCYNLHYHCTA 113 (244)
Q Consensus 82 ~~~~Cd~Cg~~~~g~~Y~C~~Cd~~lH~~Ca~ 113 (244)
....|.+|++.+..-.+.=..|+-.+|..|+.
T Consensus 77 ~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 46789999998654333333567888999974
No 199
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=56.05 E-value=3.2 Score=42.20 Aligned_cols=45 Identities=20% Similarity=0.458 Sum_probs=35.1
Q ss_pred CCCCcceEeec-CcccccccccCCCCe---eEEcCCccceeccccccCc
Q 043301 71 FHCHPLTLSKT-NHHRCDACLDECSGM---AYRCHECCYNLHYHCTALK 115 (244)
Q Consensus 71 ~H~H~L~L~~~-~~~~Cd~Cg~~~~g~---~Y~C~~Cd~~lH~~Ca~~p 115 (244)
.+.|.+.-..- .++.|..|++.+.|+ .|+|..|-.++|+.|....
T Consensus 156 i~gH~F~aT~l~Qpt~Cs~C~kFi~gL~kqGyQCqvC~~vvHKkCh~kv 204 (694)
T KOG0694|consen 156 IDGHKFGATSLRQPTFCSWCQKFIWGLRKQGYQCQVCWRVVHKKCHVKV 204 (694)
T ss_pred eeCcEEEEeeccCcchhhhhhhheeccCCCceEEeeeeehHhhhhHHHH
Confidence 33666554443 789999999987763 6999999999999997644
No 200
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=55.95 E-value=13 Score=29.53 Aligned_cols=33 Identities=18% Similarity=0.444 Sum_probs=24.4
Q ss_pred cccccccccCCC------------CeeEEcCCccceeccccccCc
Q 043301 83 HHRCDACLDECS------------GMAYRCHECCYNLHYHCTALK 115 (244)
Q Consensus 83 ~~~Cd~Cg~~~~------------g~~Y~C~~Cd~~lH~~Ca~~p 115 (244)
...|-+|...+. ..+|+|..|.-.+...|-...
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fi 99 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFV 99 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhh
Confidence 346999998653 236999999888888886544
No 201
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=55.30 E-value=7 Score=39.97 Aligned_cols=72 Identities=22% Similarity=0.521 Sum_probs=53.6
Q ss_pred cccccccC-CCC--CcEEeC--CCCCccccccccCCCcCCCCCCCCcceEeecCcccccccccCCCCeeEEcCCccce--
Q 043301 34 ICDICETS-LQG--PAYGCG--TCEFSIHKSCAELPLKIDHPFHCHPLTLSKTNHHRCDACLDECSGMAYRCHECCYN-- 106 (244)
Q Consensus 34 ~C~~C~~~-i~g--~~Y~C~--~C~F~lH~~Ca~~p~~i~hp~H~H~L~L~~~~~~~Cd~Cg~~~~g~~Y~C~~Cd~~-- 106 (244)
-|-.|.+. .|- ..-+|+ .|...||..|...... +.+++||.-|...-...+++|.-|.+.
T Consensus 7 GCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYGIvqV-------------PtGpWfCrKCesqeraarvrCeLCP~kdG 73 (900)
T KOG0956|consen 7 GCCVCSDERGWAENPLVYCDGHNCSVAVHQACYGIVQV-------------PTGPWFCRKCESQERAARVRCELCPHKDG 73 (900)
T ss_pred ceeeecCcCCCccCceeeecCCCceeeeehhcceeEec-------------CCCchhhhhhhhhhhhccceeecccCccc
Confidence 46677654 453 566786 7999999999864321 127899999999888888999999543
Q ss_pred ----------eccccccCcCcc
Q 043301 107 ----------LHYHCTALKPSI 118 (244)
Q Consensus 107 ----------lH~~Ca~~p~~i 118 (244)
.|+.||..-|.+
T Consensus 74 ALKkTDn~GWAHVVCALYIPEV 95 (900)
T KOG0956|consen 74 ALKKTDNGGWAHVVCALYIPEV 95 (900)
T ss_pred ceecccCCCceEEEEEeeccce
Confidence 799999766554
No 202
>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]
Probab=55.20 E-value=4.7 Score=40.49 Aligned_cols=42 Identities=26% Similarity=0.622 Sum_probs=33.9
Q ss_pred CCCEeeeeccCCCcccccccccccCCCC---CcEEeCCCCCccccccccC
Q 043301 17 HYLIFNENEVGHDDVVIICDICETSLQG---PAYGCGTCEFSIHKSCAEL 63 (244)
Q Consensus 17 H~L~L~~~~~~~~~~~~~C~~C~~~i~g---~~Y~C~~C~F~lH~~Ca~~ 63 (244)
|.++++ . ....+.|.+|.....| .+|.|..|+-..|+.|...
T Consensus 524 H~fqmh-t----F~~~tsCkvC~mllrGtfYQGY~C~~c~~~ahkecl~~ 568 (865)
T KOG2996|consen 524 HDFQMH-T----FKNTTSCKVCQMLLRGTFYQGYKCEKCGADAHKECLGR 568 (865)
T ss_pred cceEEE-e----ccCCcchHHHHHHhhhhhhcceeeeeccccHHHHhccC
Confidence 666662 2 2457899999998877 3799999999999999875
No 203
>smart00396 ZnF_UBR1 Putative zinc finger in N-recognin, a recognition component of the N-end rule pathway. Domain is involved in recognition of N-end rule substrates in yeast Ubr1p
Probab=54.27 E-value=14 Score=26.60 Aligned_cols=51 Identities=22% Similarity=0.447 Sum_probs=30.2
Q ss_pred ccccCCC--CCcEEeCCCCC----ccccccccCCCcCCCCCCCCcceEeecCcccccccccC
Q 043301 37 ICETSLQ--GPAYGCGTCEF----SIHKSCAELPLKIDHPFHCHPLTLSKTNHHRCDACLDE 92 (244)
Q Consensus 37 ~C~~~i~--g~~Y~C~~C~F----~lH~~Ca~~p~~i~hp~H~H~L~L~~~~~~~Cd~Cg~~ 92 (244)
.|+.... ...|+|..|.. .++..|+.. ..|. .|...+.......+-.||..
T Consensus 2 ~C~~~~~~~~~~y~C~tC~~~~~~~iC~~Cf~~---~~H~--gH~~~~~~~~~~~~CDCG~~ 58 (71)
T smart00396 2 VCTYKFTGGEVIYRCKTCGLDPTCVLCSDCFRS---NCHK--GHDYSLKTSRGSGICDCGDK 58 (71)
T ss_pred CCCCccCCCCEEEECcCCCCCCCEeEChHHCCC---CCCC--CCCEEEEEecCCEEECCCCh
Confidence 4666552 25799999975 366666542 2333 56666666544245557764
No 204
>KOG1169 consensus Diacylglycerol kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=54.02 E-value=12 Score=37.99 Aligned_cols=86 Identities=20% Similarity=0.358 Sum_probs=54.8
Q ss_pred CcccccccccccCC--C----CCcEEeCCCCCccccccccCCCcC----CCCCCCCcceEee------cCcccccccccC
Q 043301 29 DDVVIICDICETSL--Q----GPAYGCGTCEFSIHKSCAELPLKI----DHPFHCHPLTLSK------TNHHRCDACLDE 92 (244)
Q Consensus 29 ~~~~~~C~~C~~~i--~----g~~Y~C~~C~F~lH~~Ca~~p~~i----~hp~H~H~L~L~~------~~~~~Cd~Cg~~ 92 (244)
...+.+|..|.... . +.+++|.-|.+-+|..|...+.+- ....+.-...+.. .....|+.|...
T Consensus 106 ~~~~~~c~~c~~~c~~~~~~~~~g~~C~~C~~~vh~~C~~~~~~~~~~~~~~~~~r~~v~~~~~~~~~~~~~~~~~~~~~ 185 (634)
T KOG1169|consen 106 LWKPAYCFVCPKSCGSCGVGIKQGLCCDWCGRTVHERCVRRADPECQCKCDLGRLRKIVLDHPWVKGNAGEAKCDQCLKS 185 (634)
T ss_pred CCCCceEEeccccccchhhcccCceeeccccchHHHHHHhhcCcccccccccccccceeecCcccccccCCccchhhhcc
Confidence 45678888887774 1 247999999999999999865421 1211211111111 145667766664
Q ss_pred CC----CeeEEcCCccceeccccccC
Q 043301 93 CS----GMAYRCHECCYNLHYHCTAL 114 (244)
Q Consensus 93 ~~----g~~Y~C~~Cd~~lH~~Ca~~ 114 (244)
.. .-.++|.-|...+|..|...
T Consensus 186 ~~~~~~~~~~~c~~~~~~~h~~~~~~ 211 (634)
T KOG1169|consen 186 VKADQGLTGPRCGWCQIRVHDKCKSE 211 (634)
T ss_pred ccccccccccccceeeeeeecchHHH
Confidence 22 22588999999999999653
No 205
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=52.42 E-value=3.5 Score=40.59 Aligned_cols=84 Identities=23% Similarity=0.415 Sum_probs=53.3
Q ss_pred ccccccccccCCCCCcEEeCCC------------CCccccccccCCCcCCCC-CC---CCcceEeec---Cccccccccc
Q 043301 31 VVIICDICETSLQGPAYGCGTC------------EFSIHKSCAELPLKIDHP-FH---CHPLTLSKT---NHHRCDACLD 91 (244)
Q Consensus 31 ~~~~C~~C~~~i~g~~Y~C~~C------------~F~lH~~Ca~~p~~i~hp-~H---~H~L~L~~~---~~~~Cd~Cg~ 91 (244)
++++|++|...++- =+|..| +-.+|-.||.+.+-+... .| .-.|.-..| +...|.+|..
T Consensus 169 epWfCeaC~~Gvs~--P~CElCPn~~GifKetDigrWvH~iCALYvpGVafg~~~~l~~Vtl~em~ysk~Gak~Cs~Ced 246 (707)
T KOG0957|consen 169 EPWFCEACLYGVSL--PHCELCPNRFGIFKETDIGRWVHAICALYVPGVAFGQTHTLCGVTLEEMDYSKFGAKTCSACED 246 (707)
T ss_pred CchhhhhHhcCCCC--CccccCCCcCCcccccchhhHHHHHHHhhcCccccccccccccccHHHhhhhhhccchhccccc
Confidence 67899999766542 456655 224888999876543221 12 111111222 7789999998
Q ss_pred CC---CCeeEEcC--CccceeccccccCcC
Q 043301 92 EC---SGMAYRCH--ECCYNLHYHCTALKP 116 (244)
Q Consensus 92 ~~---~g~~Y~C~--~Cd~~lH~~Ca~~p~ 116 (244)
.+ .|..-.|. -|.-++|+.||....
T Consensus 247 ~~fARtGvci~CdaGMCk~YfHVTCAQk~G 276 (707)
T KOG0957|consen 247 KIFARTGVCIRCDAGMCKEYFHVTCAQKLG 276 (707)
T ss_pred hhhhhcceeeeccchhhhhhhhhhHHhhhc
Confidence 64 46666666 477889999997663
No 206
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=51.98 E-value=17 Score=36.09 Aligned_cols=90 Identities=14% Similarity=0.151 Sum_probs=51.6
Q ss_pred CCcEEEEEecc-----CCcceeeecccccccccCCCCcchhhHHHHhhhhcccccccccCCCCceeEeecCCCCChhhhh
Q 043301 140 QDVELRTIQER-----NPEDLTFHDVFSSFTEKDRNQLDDITENIESEIAGIKKTLSETGDQGSKVTISESYPYSDDTLA 214 (244)
Q Consensus 140 ~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~n~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~ 214 (244)
+...|.+.++. ..+...++ ++ +|-+.|.-+.|||+-++.+....-...+. ..|-+..-.++|.|.+
T Consensus 121 ~~g~iti~aee~~~~~~~~~~~~~-~~-~ld~kd~f~ksd~~l~~~~~~~d~s~~~~----~~tEv~~n~l~p~w~~--- 191 (529)
T KOG1327|consen 121 GSGTITISAEEDESDNDVVQFSFR-AK-NLDPKDFFSKSDPYLEFYKRVDDGSTQML----YRTEVVKNTLNPQWAP--- 191 (529)
T ss_pred CcccEEEEeecccccCceeeeeee-ee-ecCcccccccCCcceEEEEecCCCceeec----cccceeccCCCCcccc---
Confidence 45555555432 12233444 45 48999999999998665533211111111 2233344466888887
Q ss_pred hhhhhcC---CCCccceeEEEEeccCcc
Q 043301 215 QFILRLQ---NSLRSKNMSVEFWDLDDV 239 (244)
Q Consensus 215 ~~~~~~~---~~~~~~~~~~~~~~~~~~ 239 (244)
|...++ ..|.++-+-||+||+|-.
T Consensus 192 -~~i~~~~l~~~~~~~~~~i~~~d~~~~ 218 (529)
T KOG1327|consen 192 -FSISLQSLCSKDGNRPIQIECYDYDSN 218 (529)
T ss_pred -cccchhhhcccCCCCceEEEEeccCCC
Confidence 554443 346678888999998853
No 207
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=51.52 E-value=10 Score=32.40 Aligned_cols=35 Identities=3% Similarity=0.040 Sum_probs=24.9
Q ss_pred CCCCChhhhhhhhhhcCCCCccceeEEEEeccCccc
Q 043301 205 SYPYSDDTLAQFILRLQNSLRSKNMSVEFWDLDDVL 240 (244)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (244)
..+.|||| -+|-.+++.=-++.||.+.|||-..++
T Consensus 57 ~~~~WnEw-L~f~I~~~dLP~~arLc~ti~~~~~~~ 91 (178)
T cd08399 57 EEVLWNTW-LEFDIKIKDLPKGALLNLQIYCGKAPA 91 (178)
T ss_pred CCcccccc-EECccccccCChhhEEEEEEEEEecCc
Confidence 34789998 345555555567889999999975543
No 208
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=51.13 E-value=9.1 Score=31.85 Aligned_cols=32 Identities=9% Similarity=0.346 Sum_probs=23.4
Q ss_pred CCChhhhhhhhhhcCCCCccceeEEEEeccCcc
Q 043301 207 PYSDDTLAQFILRLQNSLRSKNMSVEFWDLDDV 239 (244)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (244)
+.|||| .+|-.+++.=-++-||.|.|||-+..
T Consensus 60 ~~WnEw-l~fpI~i~dLP~~a~L~iti~~~~~~ 91 (159)
T cd08397 60 RNWNEW-LTLPIKYSDLPRNSQLAITIWDVSGT 91 (159)
T ss_pred ccccee-EEcccchhcCChhheEEEEEEEecCC
Confidence 569999 34555555556788999999997643
No 209
>KOG1169 consensus Diacylglycerol kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=49.68 E-value=7.4 Score=39.35 Aligned_cols=82 Identities=20% Similarity=0.393 Sum_probs=53.8
Q ss_pred cccccccCCCCCcEEeCCCCCccccccccCCCc---------CCCCCC----CCcceEeec-CcccccccccCC--C---
Q 043301 34 ICDICETSLQGPAYGCGTCEFSIHKSCAELPLK---------IDHPFH----CHPLTLSKT-NHHRCDACLDEC--S--- 94 (244)
Q Consensus 34 ~C~~C~~~i~g~~Y~C~~C~F~lH~~Ca~~p~~---------i~hp~H----~H~L~L~~~-~~~~Cd~Cg~~~--~--- 94 (244)
.|..|...-.-..-.|+.|+..+|..|...... ..+..| .|-...... .+..|..|.+.+ .
T Consensus 46 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~c~~c~~~c~~~~~~ 125 (634)
T KOG1169|consen 46 VCCVCLWSEMAPSVDCDVDGGVSHEECVSGAASDCPLLVLLGFENQRHKTDGDHVWRPKHLWKPAYCFVCPKSCGSCGVG 125 (634)
T ss_pred hhhhhhhcccccccceeccccchhhhhhcccccchHHHHHHHhhhhhhhccCceeccCCCCCCCceEEeccccccchhhc
Confidence 788887743345789999999999999875332 122222 222222222 566777666543 2
Q ss_pred -CeeEEcCCccceeccccccCc
Q 043301 95 -GMAYRCHECCYNLHYHCTALK 115 (244)
Q Consensus 95 -g~~Y~C~~Cd~~lH~~Ca~~p 115 (244)
+..+.|.-|.+-+|..|...+
T Consensus 126 ~~~g~~C~~C~~~vh~~C~~~~ 147 (634)
T KOG1169|consen 126 IKQGLCCDWCGRTVHERCVRRA 147 (634)
T ss_pred ccCceeeccccchHHHHHHhhc
Confidence 235999999999999998766
No 210
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=49.59 E-value=9.8 Score=32.06 Aligned_cols=35 Identities=14% Similarity=0.288 Sum_probs=24.3
Q ss_pred CCCCChhhhhhhhhhcCCCCccceeEEEEeccCccc
Q 043301 205 SYPYSDDTLAQFILRLQNSLRSKNMSVEFWDLDDVL 240 (244)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (244)
..+.||||++ |-+.++.=-++-||.|.||+-..+.
T Consensus 55 ~~~~Wnewl~-F~I~i~dLPr~ArLciti~~~~~~~ 89 (173)
T cd08693 55 NDPVWNETLE-FDINVCDLPRMARLCFAIYEVSKKA 89 (173)
T ss_pred CccccceeEE-cccchhcCChhHeEEEEEEEecccc
Confidence 3478999832 4444555567889999999976543
No 211
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.83 E-value=3.9 Score=41.63 Aligned_cols=43 Identities=28% Similarity=0.556 Sum_probs=35.6
Q ss_pred CCCCEeeeeccCCCcccccccccccCCCCC---cEEeCCCCCccccccccC
Q 043301 16 MHYLIFNENEVGHDDVVIICDICETSLQGP---AYGCGTCEFSIHKSCAEL 63 (244)
Q Consensus 16 pH~L~L~~~~~~~~~~~~~C~~C~~~i~g~---~Y~C~~C~F~lH~~Ca~~ 63 (244)
||++.. .. ...+++|-.|...+||. +.+|.+|+..+|..|.++
T Consensus 172 phnf~~-~t----~~tpt~cyecegllwglarqglrctqc~vk~hdkc~el 217 (1283)
T KOG1011|consen 172 PHNFAT-TT----FQTPTFCYECEGLLWGLARQGLRCTQCQVKVHDKCREL 217 (1283)
T ss_pred CCceee-ee----ccCCchhhhhhhHHHHHhhcccchhhccccHHHHHHHH
Confidence 477765 11 36789999999999984 899999999999999886
No 212
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=48.36 E-value=11 Score=39.15 Aligned_cols=50 Identities=26% Similarity=0.524 Sum_probs=35.9
Q ss_pred ccccccccccCC-CCCcEEeCCCCCc-cccccccCCCcCCCCCCCCcceEeecCccccccccc
Q 043301 31 VVIICDICETSL-QGPAYGCGTCEFS-IHKSCAELPLKIDHPFHCHPLTLSKTNHHRCDACLD 91 (244)
Q Consensus 31 ~~~~C~~C~~~i-~g~~Y~C~~C~F~-lH~~Ca~~p~~i~hp~H~H~L~L~~~~~~~Cd~Cg~ 91 (244)
+...|++|+..- ......|..|+|. +|..|..-+.. . .+...+.|+.|-.
T Consensus 214 E~~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~-e----------iP~~eWYC~NC~d 265 (1134)
T KOG0825|consen 214 EEVKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLS-E----------SPVNEWYCTNCSL 265 (1134)
T ss_pred ccccceeeccCChHHhheeecccccceeeccccCcccc-c----------ccccceecCcchh
Confidence 457899999886 3578999999998 99999874320 0 1115667777755
No 213
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=48.25 E-value=13 Score=24.38 Aligned_cols=22 Identities=23% Similarity=0.635 Sum_probs=15.8
Q ss_pred cccccccCCCC------eeEEcCCccce
Q 043301 85 RCDACLDECSG------MAYRCHECCYN 106 (244)
Q Consensus 85 ~Cd~Cg~~~~g------~~Y~C~~Cd~~ 106 (244)
+|..||..+.- ..|.|..|++.
T Consensus 2 FCp~Cg~~l~~~~~~~~~~~vC~~Cg~~ 29 (52)
T smart00661 2 FCPKCGNMLIPKEGKEKRRFVCRKCGYE 29 (52)
T ss_pred CCCCCCCccccccCCCCCEEECCcCCCe
Confidence 78889886421 37889988864
No 214
>KOG4239 consensus Ras GTPase effector RASSF2 [Signal transduction mechanisms]
Probab=47.49 E-value=2.7 Score=38.90 Aligned_cols=34 Identities=29% Similarity=0.610 Sum_probs=30.4
Q ss_pred ccccccccccCCCCC---cEEeCCCCCccccccccCC
Q 043301 31 VVIICDICETSLQGP---AYGCGTCEFSIHKSCAELP 64 (244)
Q Consensus 31 ~~~~C~~C~~~i~g~---~Y~C~~C~F~lH~~Ca~~p 64 (244)
-+..|+-|++.+||+ +..|..|+|--|.+|-.+.
T Consensus 61 ~~~~~~~c~~~~~~vl~egL~c~~c~~tch~rcr~lv 97 (348)
T KOG4239|consen 61 LPTWCDKCGDFIWGVLREGLLCIHCKFTCHIRCRMLV 97 (348)
T ss_pred ccccchhhhHHHHHHHHHHHhhhhcCCccCHHHHhhh
Confidence 468999999999985 8999999999999998763
No 215
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=47.39 E-value=18 Score=21.71 Aligned_cols=23 Identities=35% Similarity=0.678 Sum_probs=14.2
Q ss_pred cccccccccC----CCCeeEEcCCccc
Q 043301 83 HHRCDACLDE----CSGMAYRCHECCY 105 (244)
Q Consensus 83 ~~~Cd~Cg~~----~~g~~Y~C~~Cd~ 105 (244)
..+|..||.. -.||..+|..|+.
T Consensus 3 ~rfC~~CG~~t~~~~~g~~r~C~~Cg~ 29 (32)
T PF09297_consen 3 HRFCGRCGAPTKPAPGGWARRCPSCGH 29 (32)
T ss_dssp TSB-TTT--BEEE-SSSS-EEESSSS-
T ss_pred CcccCcCCccccCCCCcCEeECCCCcC
Confidence 4689999985 3579999999874
No 216
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=47.26 E-value=11 Score=35.29 Aligned_cols=33 Identities=21% Similarity=0.528 Sum_probs=25.2
Q ss_pred ccccccccccC-CCCCcEEeCCCCCccccccccC
Q 043301 31 VVIICDICETS-LQGPAYGCGTCEFSIHKSCAEL 63 (244)
Q Consensus 31 ~~~~C~~C~~~-i~g~~Y~C~~C~F~lH~~Ca~~ 63 (244)
+..+|-+|+.. ..+.+|+|..|.-.++..|--+
T Consensus 329 ~~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~ 362 (378)
T KOG2807|consen 329 GSRFCFACQGELLSSGRYRCESCKNVFCLDCDVF 362 (378)
T ss_pred CCcceeeeccccCCCCcEEchhccceeeccchHH
Confidence 45679999544 4678999999988888888654
No 217
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=47.21 E-value=11 Score=28.87 Aligned_cols=32 Identities=31% Similarity=0.781 Sum_probs=28.0
Q ss_pred ccccccccccCCCCCcEEeCC--CCCccccccccC
Q 043301 31 VVIICDICETSLQGPAYGCGT--CEFSIHKSCAEL 63 (244)
Q Consensus 31 ~~~~C~~C~~~i~g~~Y~C~~--C~F~lH~~Ca~~ 63 (244)
....|..|+.. .|..-+|.. |.-.+|..||..
T Consensus 54 ~~~~C~iC~~~-~G~~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 54 FKLKCSICGKS-GGACIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred cCCcCcCCCCC-CceeEEcCCCCCCcCCCHHHHHH
Confidence 45789999988 788899987 999999999975
No 218
>PF12773 DZR: Double zinc ribbon
Probab=47.12 E-value=14 Score=24.10 Aligned_cols=12 Identities=33% Similarity=0.695 Sum_probs=6.6
Q ss_pred cccccccccCCC
Q 043301 32 VIICDICETSLQ 43 (244)
Q Consensus 32 ~~~C~~C~~~i~ 43 (244)
..+|..|+.++.
T Consensus 12 ~~fC~~CG~~l~ 23 (50)
T PF12773_consen 12 AKFCPHCGTPLP 23 (50)
T ss_pred ccCChhhcCChh
Confidence 455666665554
No 219
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=46.67 E-value=6.3 Score=37.15 Aligned_cols=32 Identities=31% Similarity=0.800 Sum_probs=28.6
Q ss_pred CcccccccccC-CCCeeEEcCCc-cceecccccc
Q 043301 82 NHHRCDACLDE-CSGMAYRCHEC-CYNLHYHCTA 113 (244)
Q Consensus 82 ~~~~Cd~Cg~~-~~g~~Y~C~~C-d~~lH~~Ca~ 113 (244)
.+..|++|... +-|++|+|+.| ++-++..|..
T Consensus 239 hpv~cs~c~srs~~gfry~cq~C~nyqlcq~cfw 272 (434)
T KOG4301|consen 239 HPVECSYCRSRSMMGFRYRCQQCHNYQLCQQCFW 272 (434)
T ss_pred CCccCcceecccccchhhhHhhcCCccccchhhc
Confidence 67899999985 78999999999 7999999975
No 220
>PLN02436 cellulose synthase A
Probab=46.49 E-value=15 Score=39.46 Aligned_cols=34 Identities=29% Similarity=0.807 Sum_probs=28.7
Q ss_pred cccccccccCC----CC-CcEEeCCCCCccccccccCCC
Q 043301 32 VIICDICETSL----QG-PAYGCGTCEFSIHKSCAELPL 65 (244)
Q Consensus 32 ~~~C~~C~~~i----~g-~~Y~C~~C~F~lH~~Ca~~p~ 65 (244)
...|.+||+.| .| .+-.|.+|+|-++.-|.++-.
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer 74 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYER 74 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhh
Confidence 35899999997 34 588999999999999998743
No 221
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=45.74 E-value=11 Score=30.78 Aligned_cols=34 Identities=9% Similarity=0.201 Sum_probs=24.7
Q ss_pred CCCCChhhhhhhhhhcCCCCccceeEEEEeccCcc
Q 043301 205 SYPYSDDTLAQFILRLQNSLRSKNMSVEFWDLDDV 239 (244)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (244)
..+.||||+ +|-..++.=-++.||.+.||+-+..
T Consensus 56 ~~~~Wne~l-~F~i~~~~LP~~arL~itl~~~~~~ 89 (156)
T cd08380 56 TSVTWNEWL-TFDILISDLPREARLCLSIYAVSEP 89 (156)
T ss_pred CCCccccee-EccchhhcCChhheEEEEEEEEecC
Confidence 457899983 3555555557789999999987644
No 222
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=44.65 E-value=7.6 Score=26.49 Aligned_cols=30 Identities=20% Similarity=0.587 Sum_probs=17.2
Q ss_pred cccccccCCCC--------CcEEeCCCCCccccccccC
Q 043301 34 ICDICETSLQG--------PAYGCGTCEFSIHKSCAEL 63 (244)
Q Consensus 34 ~C~~C~~~i~g--------~~Y~C~~C~F~lH~~Ca~~ 63 (244)
.|-+|..++.. ..|+|..|.-.++..|-.+
T Consensus 1 ~CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~f 38 (51)
T PF07975_consen 1 YCFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVF 38 (51)
T ss_dssp EETTTTEE-TTS-------EEE--TTTT--B-HHHHHT
T ss_pred CCccCCCCCCCcccccccCCeEECCCCCCccccCcChh
Confidence 47788887743 4799999988877777554
No 223
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=44.43 E-value=17 Score=39.08 Aligned_cols=75 Identities=24% Similarity=0.551 Sum_probs=49.9
Q ss_pred cccccccccccCC-C--CCcEEeCCCCCccccccccCCCcCCCCCCCCcceEeecCcccccccccCCCCeeEEcCCc---
Q 043301 30 DVVIICDICETSL-Q--GPAYGCGTCEFSIHKSCAELPLKIDHPFHCHPLTLSKTNHHRCDACLDECSGMAYRCHEC--- 103 (244)
Q Consensus 30 ~~~~~C~~C~~~i-~--g~~Y~C~~C~F~lH~~Ca~~p~~i~hp~H~H~L~L~~~~~~~Cd~Cg~~~~g~~Y~C~~C--- 103 (244)
+...+|..|.+-- . .....|+.|+..+|..|...|..-. +...|-.|...-.+. ..|..|
T Consensus 217 ~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cygi~~ipe-------------g~WlCr~Cl~s~~~~-v~c~~cp~~ 282 (1051)
T KOG0955|consen 217 EEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYGIPFIPE-------------GQWLCRRCLQSPQRP-VRCLLCPSK 282 (1051)
T ss_pred CCCccceeecccccCCCceEEEcCCCcchhhhhccCCCCCCC-------------CcEeehhhccCcCcc-cceEeccCC
Confidence 5568999998864 3 5789999999999999987433111 455666666543333 333333
Q ss_pred ---------cceeccccccCcCcc
Q 043301 104 ---------CYNLHYHCTALKPSI 118 (244)
Q Consensus 104 ---------d~~lH~~Ca~~p~~i 118 (244)
+=..|..||...|.+
T Consensus 283 ~gAFkqt~dgrw~Hv~caiwipev 306 (1051)
T KOG0955|consen 283 GGAFKQTDDGRWAHVVCAIWIPEV 306 (1051)
T ss_pred CCcceeccCCceeeeehhhccccc
Confidence 244788898776653
No 224
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=43.61 E-value=9.9 Score=38.56 Aligned_cols=76 Identities=21% Similarity=0.469 Sum_probs=50.4
Q ss_pred ccccccccCCC---CCcEEeCCCCCccccccccCCCcCCCC--CCCCcceEeecCcccccccccCC-CCeeEEcCCccce
Q 043301 33 IICDICETSLQ---GPAYGCGTCEFSIHKSCAELPLKIDHP--FHCHPLTLSKTNHHRCDACLDEC-SGMAYRCHECCYN 106 (244)
Q Consensus 33 ~~C~~C~~~i~---g~~Y~C~~C~F~lH~~Ca~~p~~i~hp--~H~H~L~L~~~~~~~Cd~Cg~~~-~g~~Y~C~~Cd~~ 106 (244)
..|-.|+.... |..-.|..|+-..|..|...- +.|. .+. +.-. .-+.|-+||... -+-+..|..||..
T Consensus 19 ~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~--~~~~~l~~g--WrC~--~crvCe~c~~~gD~~kf~~Ck~cDvs 92 (694)
T KOG4443|consen 19 LMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSW--AQHAVLSGG--WRCP--SCRVCEACGTTGDPKKFLLCKRCDVS 92 (694)
T ss_pred hhhhhhccccccccCcchhhhhhcccCCcchhhHH--HhHHHhcCC--cccC--CceeeeeccccCCccccccccccccc
Confidence 34555555543 457999999999999998742 2221 111 1111 457788999543 3447899999999
Q ss_pred eccccccC
Q 043301 107 LHYHCTAL 114 (244)
Q Consensus 107 lH~~Ca~~ 114 (244)
+|-.|..=
T Consensus 93 yh~yc~~P 100 (694)
T KOG4443|consen 93 YHCYCQKP 100 (694)
T ss_pred ccccccCC
Confidence 99999753
No 225
>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=43.13 E-value=8.4 Score=36.72 Aligned_cols=45 Identities=29% Similarity=0.640 Sum_probs=34.0
Q ss_pred CCcceEeec-CcccccccccCCCCe---eEEcCCccceeccccccCcCc
Q 043301 73 CHPLTLSKT-NHHRCDACLDECSGM---AYRCHECCYNLHYHCTALKPS 117 (244)
Q Consensus 73 ~H~L~L~~~-~~~~Cd~Cg~~~~g~---~Y~C~~Cd~~lH~~Ca~~p~~ 117 (244)
.|.|+--.. ....|.+|...+.|. +|+|..|.+-+|+.|-.+++.
T Consensus 130 gh~fqakr~nrr~~c~ic~d~iwglgrqgyrcinckl~vhkkch~~v~~ 178 (593)
T KOG0695|consen 130 GHLFQAKRFNRRAYCGICSDRIWGLGRQGYRCINCKLLVHKKCHGLVPL 178 (593)
T ss_pred Ccchhhhhhccceeeeechhhhhhcccccceeecceeehhhhhcccccc
Confidence 344443322 467899999987765 599999999999999877643
No 226
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=42.42 E-value=13 Score=20.41 Aligned_cols=10 Identities=40% Similarity=1.155 Sum_probs=6.3
Q ss_pred EEeCCCCCcc
Q 043301 47 YGCGTCEFSI 56 (244)
Q Consensus 47 Y~C~~C~F~l 56 (244)
|+|+.|+|..
T Consensus 1 y~C~~C~y~t 10 (24)
T PF13909_consen 1 YKCPHCSYST 10 (24)
T ss_dssp EE-SSSS-EE
T ss_pred CCCCCCCCcC
Confidence 7888898764
No 227
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=38.11 E-value=25 Score=24.42 Aligned_cols=34 Identities=18% Similarity=0.445 Sum_probs=19.8
Q ss_pred CcccccccccCCC--CeeEEcCCccceeccccccCc
Q 043301 82 NHHRCDACLDECS--GMAYRCHECCYNLHYHCTALK 115 (244)
Q Consensus 82 ~~~~Cd~Cg~~~~--g~~Y~C~~Cd~~lH~~Ca~~p 115 (244)
....|..|++.+. ...++|..|+-.+...|....
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~ 43 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQR 43 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCE
Confidence 3568999999863 336999999999999998765
No 228
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=38.09 E-value=15 Score=34.24 Aligned_cols=84 Identities=21% Similarity=0.489 Sum_probs=50.8
Q ss_pred ccccccccccCCCCCcEEeCCCCCc------cccccccCCCcCCC----CCCCCcceEeec-------CcccccccccC-
Q 043301 31 VVIICDICETSLQGPAYGCGTCEFS------IHKSCAELPLKIDH----PFHCHPLTLSKT-------NHHRCDACLDE- 92 (244)
Q Consensus 31 ~~~~C~~C~~~i~g~~Y~C~~C~F~------lH~~Ca~~p~~i~h----p~H~H~L~L~~~-------~~~~Cd~Cg~~- 92 (244)
.+.+| +|-....|.+|.|..|.-. .++.|..--....| -.|--||+.+.. ..+.|-+|...
T Consensus 294 ~Ps~C-aCHs~~~~gGy~CP~CktkVCsLPi~CP~Csl~LilsthLarSyhhL~PLk~f~E~p~~~~~ks~~Cf~CQ~~f 372 (421)
T COG5151 294 LPSVC-ACHSEVKGGGYECPVCKTKVCSLPISCPICSLQLILSTHLARSYHHLYPLKPFVEKPEGTNPKSTHCFVCQGPF 372 (421)
T ss_pred Cccce-eeeeeeccCceeCCcccceeecCCccCcchhHHHHHHHHHHHHHHhhccCcccccccCCCCCCCccceeccCCC
Confidence 47788 5777778899999987544 34444321001112 123446655544 34568888763
Q ss_pred -----------CCCeeEEcCCccceeccccccCc
Q 043301 93 -----------CSGMAYRCHECCYNLHYHCTALK 115 (244)
Q Consensus 93 -----------~~g~~Y~C~~Cd~~lH~~Ca~~p 115 (244)
....+|+|..|.-.++..|-.+.
T Consensus 373 p~~~~~~~~~~~ss~rY~Ce~CK~~FC~dCdvfi 406 (421)
T COG5151 373 PKPPVSPFDESTSSGRYQCELCKSTFCSDCDVFI 406 (421)
T ss_pred CCCCCCcccccccccceechhhhhhhhhhhHHHH
Confidence 22447999999877777775443
No 229
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=37.82 E-value=20 Score=38.58 Aligned_cols=33 Identities=30% Similarity=0.885 Sum_probs=28.4
Q ss_pred cccccccccCC----CC-CcEEeCCCCCccccccccCC
Q 043301 32 VIICDICETSL----QG-PAYGCGTCEFSIHKSCAELP 64 (244)
Q Consensus 32 ~~~C~~C~~~i----~g-~~Y~C~~C~F~lH~~Ca~~p 64 (244)
...|.+||+.| .| .+-.|.+|+|-+|.-|.++-
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYE 54 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYE 54 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhhhh
Confidence 45899999997 34 58999999999999999874
No 230
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=37.59 E-value=19 Score=20.97 Aligned_cols=23 Identities=22% Similarity=0.612 Sum_probs=15.2
Q ss_pred cccccccCCCCCcEEeCCCCCcc
Q 043301 34 ICDICETSLQGPAYGCGTCEFSI 56 (244)
Q Consensus 34 ~C~~C~~~i~g~~Y~C~~C~F~l 56 (244)
.|-.|+..|....=.|..|++++
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCCC
Confidence 46667777766666677777654
No 231
>PF02148 zf-UBP: Zn-finger in ubiquitin-hydrolases and other protein; InterPro: IPR001607 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents UBP-type zinc finger domains, which display some similarity with the Zn-binding domain of the insulinase family. The UBP-type zinc finger domain is found only in a small subfamily of ubiquitin C-terminal hydrolases (deubiquitinases or UBP) [, ], All members of this subfamily are isopeptidase-T, which are known to cleave isopeptide bonds between ubiquitin moieties. Some of the proteins containing an UBP zinc finger include: Homo sapiens (Human) deubiquitinating enzyme 13 (UBPD) Human deubiquitinating enzyme 5 (UBP5) Dictyostelium discoideum (Slime mold) deubiquitinating enzyme A (UBPA) Saccharomyces cerevisiae (Baker's yeast) deubiquitinating enzyme 8 (UBP8) Yeast deubiquitinating enzyme 14 (UBP14) More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3GV4_A 3PHD_B 3C5K_A 2UZG_A 3IHP_B 2G43_B 2G45_D 2I50_A 3MHH_A 3MHS_A ....
Probab=37.32 E-value=5.2 Score=27.89 Aligned_cols=55 Identities=25% Similarity=0.508 Sum_probs=27.6
Q ss_pred ccccccCCCCCcEEeCCCCCccccccccCCCcCCCC-CCCCcceEeec-Cccccccccc
Q 043301 35 CDICETSLQGPAYGCGTCEFSIHKSCAELPLKIDHP-FHCHPLTLSKT-NHHRCDACLD 91 (244)
Q Consensus 35 C~~C~~~i~g~~Y~C~~C~F~lH~~Ca~~p~~i~hp-~H~H~L~L~~~-~~~~Cd~Cg~ 91 (244)
|+.|+.. .+..|-|-+|+++.+.+=.. .-...|. ...|+|.+... ....|-.|+.
T Consensus 1 C~~C~~~-~~~lw~CL~Cg~~~C~~~~~-~Ha~~H~~~~~H~l~v~~~~~~i~C~~C~~ 57 (63)
T PF02148_consen 1 CSVCGST-NSNLWLCLTCGYVGCGRYSN-GHALKHYKETGHPLAVSLSTGSIWCYACDD 57 (63)
T ss_dssp -SSSHTC-SSSEEEETTTS-EEETTTST-SHHHHHHHHHT--EEEETTTTCEEETTTTE
T ss_pred CCCCCCc-CCceEEeCCCCcccccCCcC-cHHHHhhcccCCeEEEECCCCeEEEcCCCc
Confidence 6677765 56789999999888753110 0001121 12688888654 3334444443
No 232
>PLN02189 cellulose synthase
Probab=37.11 E-value=25 Score=37.70 Aligned_cols=34 Identities=26% Similarity=0.756 Sum_probs=28.5
Q ss_pred cccccccccCC----CC-CcEEeCCCCCccccccccCCC
Q 043301 32 VIICDICETSL----QG-PAYGCGTCEFSIHKSCAELPL 65 (244)
Q Consensus 32 ~~~C~~C~~~i----~g-~~Y~C~~C~F~lH~~Ca~~p~ 65 (244)
...|.+||+.+ .| .+-.|.+|+|-++.-|.++-.
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer 72 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYER 72 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhh
Confidence 35899999997 34 578999999999999998743
No 233
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=37.00 E-value=33 Score=35.54 Aligned_cols=31 Identities=35% Similarity=0.686 Sum_probs=21.5
Q ss_pred cceEeec-CcccccccccCCCCeeEEcCCccce
Q 043301 75 PLTLSKT-NHHRCDACLDECSGMAYRCHECCYN 106 (244)
Q Consensus 75 ~L~L~~~-~~~~Cd~Cg~~~~g~~Y~C~~Cd~~ 106 (244)
+|+++.. ....|..||.. .....+|..|+-.
T Consensus 453 ~lt~H~~~~~L~CH~Cg~~-~~~p~~Cp~Cgs~ 484 (730)
T COG1198 453 PLTLHKATGQLRCHYCGYQ-EPIPQSCPECGSE 484 (730)
T ss_pred ceEEecCCCeeEeCCCCCC-CCCCCCCCCCCCC
Confidence 3455544 56789999887 5567788888654
No 234
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=36.65 E-value=32 Score=29.25 Aligned_cols=32 Identities=34% Similarity=0.674 Sum_probs=24.9
Q ss_pred cccccccC----CCCCcEEeCCCCCccccccccCCC
Q 043301 34 ICDICETS----LQGPAYGCGTCEFSIHKSCAELPL 65 (244)
Q Consensus 34 ~C~~C~~~----i~g~~Y~C~~C~F~lH~~Ca~~p~ 65 (244)
.|+.|+.. ..|..-.|+.|...+|+.|...-.
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs 36 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRS 36 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcCCcc
Confidence 37888543 357788999999999999987543
No 235
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=36.61 E-value=24 Score=24.56 Aligned_cols=29 Identities=21% Similarity=0.627 Sum_probs=23.1
Q ss_pred cccccccccccCCC----CCcEEeCCCCCcccc
Q 043301 30 DVVIICDICETSLQ----GPAYGCGTCEFSIHK 58 (244)
Q Consensus 30 ~~~~~C~~C~~~i~----g~~Y~C~~C~F~lH~ 58 (244)
.+...|..||.... +-.|.|..|++.+|.
T Consensus 26 ~TSq~C~~CG~~~~~~~~~r~~~C~~Cg~~~~r 58 (69)
T PF07282_consen 26 YTSQTCPRCGHRNKKRRSGRVFTCPNCGFEMDR 58 (69)
T ss_pred CCccCccCcccccccccccceEEcCCCCCEECc
Confidence 36778999999863 357999999998764
No 236
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=36.21 E-value=42 Score=26.62 Aligned_cols=32 Identities=19% Similarity=0.501 Sum_probs=24.7
Q ss_pred cccccccccCCC------------CCcEEeCCCCCccccccccC
Q 043301 32 VIICDICETSLQ------------GPAYGCGTCEFSIHKSCAEL 63 (244)
Q Consensus 32 ~~~C~~C~~~i~------------g~~Y~C~~C~F~lH~~Ca~~ 63 (244)
...|-+|..++. ..+|+|..|.-+++..|-.+
T Consensus 55 ~~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~f 98 (112)
T TIGR00622 55 SRFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVF 98 (112)
T ss_pred CCcccCcCCCCCCcccccccccccccceeCCCCCCccccccchh
Confidence 356999988753 24799999998888888654
No 237
>COG0675 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=35.23 E-value=24 Score=31.35 Aligned_cols=29 Identities=24% Similarity=0.584 Sum_probs=23.8
Q ss_pred CcccccccccccCCCCCcEEeCCCCCcccc
Q 043301 29 DDVVIICDICETSLQGPAYGCGTCEFSIHK 58 (244)
Q Consensus 29 ~~~~~~C~~C~~~i~g~~Y~C~~C~F~lH~ 58 (244)
..++..|..||. ..+-.|.|..|++..|-
T Consensus 306 ~~tS~~C~~cg~-~~~r~~~C~~cg~~~~r 334 (364)
T COG0675 306 YYTSKTCPCCGH-LSGRLFKCPRCGFVHDR 334 (364)
T ss_pred CCCcccccccCC-ccceeEECCCCCCeehh
Confidence 345678999999 66778999999998873
No 238
>PLN02195 cellulose synthase A
Probab=35.13 E-value=25 Score=37.49 Aligned_cols=34 Identities=26% Similarity=0.770 Sum_probs=28.4
Q ss_pred cccccccccCC----CC-CcEEeCCCCCccccccccCCC
Q 043301 32 VIICDICETSL----QG-PAYGCGTCEFSIHKSCAELPL 65 (244)
Q Consensus 32 ~~~C~~C~~~i----~g-~~Y~C~~C~F~lH~~Ca~~p~ 65 (244)
...|.+||+.+ .| .+-.|.+|+|-++.-|.++-+
T Consensus 6 ~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer 44 (977)
T PLN02195 6 APICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEI 44 (977)
T ss_pred CccceecccccCcCCCCCeEEEeccCCCccccchhhhhh
Confidence 35899999987 24 578999999999999998743
No 239
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=34.90 E-value=23 Score=19.97 Aligned_cols=19 Identities=26% Similarity=0.695 Sum_probs=8.9
Q ss_pred ccccccCCCCCcEEeCCCC
Q 043301 35 CDICETSLQGPAYGCGTCE 53 (244)
Q Consensus 35 C~~C~~~i~g~~Y~C~~C~ 53 (244)
|..|+..+....=.|..|+
T Consensus 2 Cp~CG~~~~~~~~fC~~CG 20 (23)
T PF13240_consen 2 CPNCGAEIEDDAKFCPNCG 20 (23)
T ss_pred CcccCCCCCCcCcchhhhC
Confidence 5555555533222255554
No 240
>PRK04023 DNA polymerase II large subunit; Validated
Probab=34.24 E-value=31 Score=36.97 Aligned_cols=21 Identities=29% Similarity=0.575 Sum_probs=11.8
Q ss_pred cccccccccCCCCeeEEcCCccc
Q 043301 83 HHRCDACLDECSGMAYRCHECCY 105 (244)
Q Consensus 83 ~~~Cd~Cg~~~~g~~Y~C~~Cd~ 105 (244)
..+|..||.... .|.|..|++
T Consensus 651 i~fCP~CG~~~~--~y~CPKCG~ 671 (1121)
T PRK04023 651 VYRCPRCGIEVE--EDECEKCGR 671 (1121)
T ss_pred ceeCccccCcCC--CCcCCCCCC
Confidence 446666666533 256666654
No 241
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=33.95 E-value=23 Score=22.00 Aligned_cols=22 Identities=32% Similarity=0.821 Sum_probs=10.3
Q ss_pred cccccccCC-----CC---CcEEeCCCCCc
Q 043301 34 ICDICETSL-----QG---PAYGCGTCEFS 55 (244)
Q Consensus 34 ~C~~C~~~i-----~g---~~Y~C~~C~F~ 55 (244)
+|..||.++ .| ..+-|..|+++
T Consensus 2 fC~~CG~~l~~~ip~gd~r~R~vC~~Cg~I 31 (34)
T PF14803_consen 2 FCPQCGGPLERRIPEGDDRERLVCPACGFI 31 (34)
T ss_dssp B-TTT--B-EEE--TT-SS-EEEETTTTEE
T ss_pred ccccccChhhhhcCCCCCccceECCCCCCE
Confidence 566776664 12 35777777653
No 242
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=33.21 E-value=36 Score=23.92 Aligned_cols=9 Identities=22% Similarity=0.767 Sum_probs=4.3
Q ss_pred cccccccCC
Q 043301 34 ICDICETSL 42 (244)
Q Consensus 34 ~C~~C~~~i 42 (244)
.|..|+..|
T Consensus 9 ~CtSCg~~i 17 (59)
T PRK14890 9 KCTSCGIEI 17 (59)
T ss_pred cccCCCCcc
Confidence 444454444
No 243
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.
Probab=33.13 E-value=28 Score=20.90 Aligned_cols=22 Identities=27% Similarity=0.736 Sum_probs=13.8
Q ss_pred cccccccccCCCCeeEEcCCcccee
Q 043301 83 HHRCDACLDECSGMAYRCHECCYNL 107 (244)
Q Consensus 83 ~~~Cd~Cg~~~~g~~Y~C~~Cd~~l 107 (244)
...|.+|+. ...|+|..|+..+
T Consensus 2 ~~~C~vC~~---~~kY~Cp~C~~~~ 23 (30)
T PF04438_consen 2 RKLCSVCGN---PAKYRCPRCGARY 23 (30)
T ss_dssp -EEETSSSS---EESEE-TTT--EE
T ss_pred cCCCccCcC---CCEEECCCcCCce
Confidence 357889988 3469999997654
No 244
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=33.12 E-value=32 Score=31.28 Aligned_cols=45 Identities=18% Similarity=0.583 Sum_probs=36.1
Q ss_pred cEEeCCCCCccccccccCCCcCCCCCC-CCcceEeecCcccccccccC
Q 043301 46 AYGCGTCEFSIHKSCAELPLKIDHPFH-CHPLTLSKTNHHRCDACLDE 92 (244)
Q Consensus 46 ~Y~C~~C~F~lH~~Ca~~p~~i~hp~H-~H~L~L~~~~~~~Cd~Cg~~ 92 (244)
-|.|..|++..=.+|.+.-.+.+.... .|||... ....|+.|+..
T Consensus 134 eFeC~~Cg~~~~~R~~K~L~TFtnv~pdwhPLnA~--h~~pCn~C~~k 179 (275)
T PF15499_consen 134 EFECSQCGHKYQNRCTKTLVTFTNVIPDWHPLNAV--HFGPCNSCNSK 179 (275)
T ss_pred EEEccccCChhhhhheeeecccCCCCCCCCccccc--ccCCCcccCCh
Confidence 589999999999999986666655544 7888776 46789999985
No 245
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=32.05 E-value=32 Score=22.66 Aligned_cols=9 Identities=22% Similarity=0.737 Sum_probs=4.6
Q ss_pred cccccccCC
Q 043301 85 RCDACLDEC 93 (244)
Q Consensus 85 ~Cd~Cg~~~ 93 (244)
.|..|++.+
T Consensus 28 ~C~~C~~~l 36 (58)
T PF00412_consen 28 KCSKCGKPL 36 (58)
T ss_dssp BETTTTCBT
T ss_pred ccCCCCCcc
Confidence 455555544
No 246
>PRK14873 primosome assembly protein PriA; Provisional
Probab=31.20 E-value=41 Score=34.44 Aligned_cols=21 Identities=29% Similarity=0.714 Sum_probs=13.8
Q ss_pred CcccccccccCCCCeeEEcCCcc
Q 043301 82 NHHRCDACLDECSGMAYRCHECC 104 (244)
Q Consensus 82 ~~~~Cd~Cg~~~~g~~Y~C~~Cd 104 (244)
....|..||... ....|..|+
T Consensus 409 ~~l~Ch~CG~~~--~p~~Cp~Cg 429 (665)
T PRK14873 409 GTPRCRWCGRAA--PDWRCPRCG 429 (665)
T ss_pred CeeECCCCcCCC--cCccCCCCc
Confidence 456688888753 256777775
No 247
>COG0675 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=31.15 E-value=33 Score=30.37 Aligned_cols=28 Identities=21% Similarity=0.619 Sum_probs=23.8
Q ss_pred CcccccccccCCCCeeEEcCCccceeccc
Q 043301 82 NHHRCDACLDECSGMAYRCHECCYNLHYH 110 (244)
Q Consensus 82 ~~~~Cd~Cg~~~~g~~Y~C~~Cd~~lH~~ 110 (244)
+...|..||. +.+-.+.|..|++..|.+
T Consensus 308 tS~~C~~cg~-~~~r~~~C~~cg~~~~rD 335 (364)
T COG0675 308 TSKTCPCCGH-LSGRLFKCPRCGFVHDRD 335 (364)
T ss_pred CcccccccCC-ccceeEECCCCCCeehhh
Confidence 5679999999 667789999999887776
No 248
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....
Probab=30.94 E-value=21 Score=22.28 Aligned_cols=29 Identities=14% Similarity=0.268 Sum_probs=22.0
Q ss_pred ccccccccCCCCCcEEeCCCCCccccccccC
Q 043301 33 IICDICETSLQGPAYGCGTCEFSIHKSCAEL 63 (244)
Q Consensus 33 ~~C~~C~~~i~g~~Y~C~~C~F~lH~~Ca~~ 63 (244)
..|..+... ...|.|..|+..++..|...
T Consensus 4 ~~C~~H~~~--~~~~~C~~C~~~~C~~C~~~ 32 (42)
T PF00643_consen 4 PKCPEHPEE--PLSLFCEDCNEPLCSECTVS 32 (42)
T ss_dssp SB-SSTTTS--BEEEEETTTTEEEEHHHHHT
T ss_pred ccCccCCcc--ceEEEecCCCCccCccCCCC
Confidence 467777654 24799999999999999874
No 249
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=30.81 E-value=20 Score=23.25 Aligned_cols=29 Identities=31% Similarity=0.720 Sum_probs=15.7
Q ss_pred ccccccCCCCeeEEcC--CccceeccccccCc
Q 043301 86 CDACLDECSGMAYRCH--ECCYNLHYHCTALK 115 (244)
Q Consensus 86 Cd~Cg~~~~g~~Y~C~--~Cd~~lH~~Ca~~p 115 (244)
|.+|.+.+ -.+.+|. .|...+|..|+..-
T Consensus 1 C~~C~~iv-~~G~~C~~~~C~~r~H~~C~~~y 31 (43)
T PF08746_consen 1 CEACKEIV-TQGQRCSNRDCNVRLHDDCFKKY 31 (43)
T ss_dssp -TTT-SB--SSSEE-SS--S--EE-HHHHHHH
T ss_pred CcccchhH-eeeccCCCCccCchHHHHHHHHH
Confidence 66787753 3458898 69999999998643
No 250
>PRK12442 translation initiation factor IF-1; Reviewed
Probab=30.39 E-value=32 Score=26.10 Aligned_cols=21 Identities=14% Similarity=0.112 Sum_probs=15.4
Q ss_pred hhcCCCCccceeEEEEeccCcccc
Q 043301 218 LRLQNSLRSKNMSVEFWDLDDVLV 241 (244)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~ 241 (244)
.++-++| |+.||+|+||.+.-
T Consensus 45 IrIl~GD---~V~VE~spYDltkG 65 (87)
T PRK12442 45 IRILAGD---RVTLELSPYDLTKG 65 (87)
T ss_pred EEecCCC---EEEEEECcccCCce
Confidence 3455555 68999999998753
No 251
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=30.18 E-value=27 Score=37.47 Aligned_cols=35 Identities=29% Similarity=0.738 Sum_probs=29.2
Q ss_pred ccccccccccCC----CC-CcEEeCCCCCccccccccCCC
Q 043301 31 VVIICDICETSL----QG-PAYGCGTCEFSIHKSCAELPL 65 (244)
Q Consensus 31 ~~~~C~~C~~~i----~g-~~Y~C~~C~F~lH~~Ca~~p~ 65 (244)
....|.+||+.+ .| .+-.|.+|+|-++..|.++-.
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~ 53 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYER 53 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhh
Confidence 356899999997 34 578999999999999998643
No 252
>COG0361 InfA Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis]
Probab=29.98 E-value=32 Score=25.31 Aligned_cols=20 Identities=15% Similarity=-0.087 Sum_probs=14.8
Q ss_pred cCCCCccceeEEEEeccCccccc
Q 043301 220 LQNSLRSKNMSVEFWDLDDVLVN 242 (244)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~ 242 (244)
+.|+| ++.||.||||.+.-.
T Consensus 47 I~~GD---~V~Ve~~~~d~~kg~ 66 (75)
T COG0361 47 ILPGD---VVLVELSPYDLTKGR 66 (75)
T ss_pred eCCCC---EEEEEeccccccccc
Confidence 45555 589999999977543
No 253
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=29.91 E-value=20 Score=33.12 Aligned_cols=83 Identities=17% Similarity=0.240 Sum_probs=50.1
Q ss_pred ccccccccccC----CCC---CcEEeCCCCCccccccccCCCcCCCCCCCCcceEeecCcccccccccCC-CCeeEEcCC
Q 043301 31 VVIICDICETS----LQG---PAYGCGTCEFSIHKSCAELPLKIDHPFHCHPLTLSKTNHHRCDACLDEC-SGMAYRCHE 102 (244)
Q Consensus 31 ~~~~C~~C~~~----i~g---~~Y~C~~C~F~lH~~Ca~~p~~i~hp~H~H~L~L~~~~~~~Cd~Cg~~~-~g~~Y~C~~ 102 (244)
....|.+|-+. +.| ..-.|..|.-..|+.|..-++.+-.-.-.-+++-. .-..|.+|+... ..-.+.|..
T Consensus 257 ~~~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~--~C~lC~IC~~P~~E~E~~FCD~ 334 (381)
T KOG1512|consen 257 RRNERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCS--SCELCRICLGPVIESEHLFCDV 334 (381)
T ss_pred chhhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhc--ccHhhhccCCcccchheecccc
Confidence 34567777443 122 36889999999999998865532110000000000 234566666653 344688999
Q ss_pred ccceeccccccCc
Q 043301 103 CCYNLHYHCTALK 115 (244)
Q Consensus 103 Cd~~lH~~Ca~~p 115 (244)
||--.|.-|+.+.
T Consensus 335 CDRG~HT~CVGL~ 347 (381)
T KOG1512|consen 335 CDRGPHTLCVGLQ 347 (381)
T ss_pred ccCCCCccccccc
Confidence 9988999998765
No 254
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=29.80 E-value=43 Score=23.68 Aligned_cols=9 Identities=44% Similarity=1.287 Sum_probs=4.4
Q ss_pred cEEeCCCCC
Q 043301 46 AYGCGTCEF 54 (244)
Q Consensus 46 ~Y~C~~C~F 54 (244)
.|.|..|+|
T Consensus 50 ~Y~Cp~CGF 58 (61)
T COG2888 50 PYRCPKCGF 58 (61)
T ss_pred ceECCCcCc
Confidence 455555544
No 255
>PLN02400 cellulose synthase
Probab=29.37 E-value=35 Score=36.78 Aligned_cols=34 Identities=29% Similarity=0.744 Sum_probs=28.8
Q ss_pred cccccccccCC----CC-CcEEeCCCCCccccccccCCC
Q 043301 32 VIICDICETSL----QG-PAYGCGTCEFSIHKSCAELPL 65 (244)
Q Consensus 32 ~~~C~~C~~~i----~g-~~Y~C~~C~F~lH~~Ca~~p~ 65 (244)
...|.+||+.| .| .+-.|.+|+|-++.-|.++-+
T Consensus 36 gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYER 74 (1085)
T PLN02400 36 GQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYER 74 (1085)
T ss_pred CceeeecccccCcCCCCCEEEEEccCCCccccchhheec
Confidence 35899999997 34 588999999999999998743
No 256
>TIGR00008 infA translation initiation factor IF-1. This family consists of translation initiation factor IF-1 as found in bacteria and chloroplasts. This protein, about 70 residues in length, consists largely of an S1 RNA binding domain (pfam00575).
Probab=29.21 E-value=32 Score=24.82 Aligned_cols=21 Identities=19% Similarity=0.072 Sum_probs=15.6
Q ss_pred hcCCCCccceeEEEEeccCccccc
Q 043301 219 RLQNSLRSKNMSVEFWDLDDVLVN 242 (244)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~ 242 (244)
++.++| |+.||+|++|.+.-.
T Consensus 44 ~I~~GD---~V~Ve~spyd~tkgr 64 (68)
T TIGR00008 44 RILPGD---KVKVELSPYDLTRGR 64 (68)
T ss_pred EECCCC---EEEEEECcccCCcEe
Confidence 355665 689999999987643
No 257
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=28.65 E-value=43 Score=30.78 Aligned_cols=33 Identities=30% Similarity=0.643 Sum_probs=21.8
Q ss_pred ccccccccCCC-CCcEEeCCCCCccccccccCCC
Q 043301 33 IICDICETSLQ-GPAYGCGTCEFSIHKSCAELPL 65 (244)
Q Consensus 33 ~~C~~C~~~i~-g~~Y~C~~C~F~lH~~Ca~~p~ 65 (244)
..|++||..-. .....|..|+--+|+.|...|.
T Consensus 282 k~csicgtsenddqllfcddcdrgyhmyclsppm 315 (336)
T KOG1244|consen 282 KYCSICGTSENDDQLLFCDDCDRGYHMYCLSPPM 315 (336)
T ss_pred ceeccccCcCCCceeEeecccCCceeeEecCCCc
Confidence 45666665542 3467788888888888876443
No 258
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=28.39 E-value=31 Score=28.75 Aligned_cols=33 Identities=9% Similarity=0.155 Sum_probs=24.1
Q ss_pred CCChhhhhhhhhhcCCCCccceeEEEEeccCccc
Q 043301 207 PYSDDTLAQFILRLQNSLRSKNMSVEFWDLDDVL 240 (244)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (244)
+.||||+ +|-..++.=-+|.||.|-||+=....
T Consensus 63 ~~Wnewl-~F~i~i~~LPrearL~itl~~~~~~~ 95 (171)
T cd04012 63 VVWDEWI-EFPIPVCQLPRESRLVLTLYGTTSSP 95 (171)
T ss_pred ccccceE-ECccchhcCChhHEEEEEEEEEecCC
Confidence 5699983 35555555578899999999866544
No 259
>PF02207 zf-UBR: Putative zinc finger in N-recognin (UBR box); InterPro: IPR003126 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The N-end rule-based degradation signal, which targets a protein for ubiquitin-dependent proteolysis, comprises a destabilising amino-terminal residue and a specific internal lysine residue. This entry describes a putative zinc finger in N-recognin, a recognition component of the N-end rule pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0004842 ubiquitin-protein ligase activity, 0008270 zinc ion binding; PDB: 3NY1_B 3NIS_F 3NIM_A 3NIK_A 3NII_A 3NIH_A 3NIL_D 3NIN_B 3NIJ_A 3NIT_A ....
Probab=28.38 E-value=46 Score=23.68 Aligned_cols=50 Identities=24% Similarity=0.470 Sum_probs=25.1
Q ss_pred ccccCCC--CCcEEeCCCC----CccccccccCCCcCCCCCC-CCcceEeecCcccccccccC
Q 043301 37 ICETSLQ--GPAYGCGTCE----FSIHKSCAELPLKIDHPFH-CHPLTLSKTNHHRCDACLDE 92 (244)
Q Consensus 37 ~C~~~i~--g~~Y~C~~C~----F~lH~~Ca~~p~~i~hp~H-~H~L~L~~~~~~~Cd~Cg~~ 92 (244)
.|+..+. ...|+|.+|. ..++..|.. ...| .|.+.+........-.||..
T Consensus 2 ~C~~~~~~~q~~y~C~tC~~~~~~~iC~~CF~------~~~H~gH~~~~~~~~~~~~CDCG~~ 58 (71)
T PF02207_consen 2 KCTYVWTSGQIFYRCLTCSLDESSGICEECFA------NSCHEGHRVVYYRSSSGGCCDCGDP 58 (71)
T ss_dssp SS--B--TT-EEEEETTTBSSTT-BBEHHHHC------TSGGGGSSEEEEE--SCEBB-TT-G
T ss_pred cCCCCCcCCCEEEECccCCCCCCEEEchhhCC------CCCcCCCcEEEEEeCCCeEEeCCCC
Confidence 3555542 3589999995 457777722 1235 78877776542344446664
No 260
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=28.05 E-value=58 Score=31.76 Aligned_cols=34 Identities=24% Similarity=0.460 Sum_probs=24.0
Q ss_pred ccccccccccCC-C------C--CcEEeCCCCCccccccccCC
Q 043301 31 VVIICDICETSL-Q------G--PAYGCGTCEFSIHKSCAELP 64 (244)
Q Consensus 31 ~~~~C~~C~~~i-~------g--~~Y~C~~C~F~lH~~Ca~~p 64 (244)
.+.||..|.-.| . + ....|..|+..-|-.||---
T Consensus 122 ~~gFC~~C~C~iC~kfD~~~n~~~Wi~Cd~CgH~cH~dCALr~ 164 (446)
T PF07227_consen 122 EPGFCRRCMCCICSKFDDNKNTCSWIGCDVCGHWCHLDCALRH 164 (446)
T ss_pred CCCccccCCccccCCcccCCCCeeEEeccCCCceehhhhhccc
Confidence 346777766655 1 1 24789999999999999743
No 261
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=27.02 E-value=9.9 Score=39.23 Aligned_cols=51 Identities=33% Similarity=0.694 Sum_probs=30.0
Q ss_pred cccccccccccCC-------------CC-CcEEeCCCCCccccccccCCCcCCCCCCCCcceEe----ec-Ccccccccc
Q 043301 30 DVVIICDICETSL-------------QG-PAYGCGTCEFSIHKSCAELPLKIDHPFHCHPLTLS----KT-NHHRCDACL 90 (244)
Q Consensus 30 ~~~~~C~~C~~~i-------------~g-~~Y~C~~C~F~lH~~Ca~~p~~i~hp~H~H~L~L~----~~-~~~~Cd~Cg 90 (244)
++.+.||.|.... .| --|+|.+|.-. + .|+|-|+-+ .. .++.||-|+
T Consensus 892 ~gmyaCDqCDK~FqKqSSLaRHKYEHsGqRPyqC~iCkKA-----------F---KHKHHLtEHkRLHSGEKPfQCdKCl 957 (1007)
T KOG3623|consen 892 DGMYACDQCDKAFQKQSSLARHKYEHSGQRPYQCIICKKA-----------F---KHKHHLTEHKRLHSGEKPFQCDKCL 957 (1007)
T ss_pred cccchHHHHHHHHHhhHHHHHhhhhhcCCCCcccchhhHh-----------h---hhhhhhhhhhhhccCCCcchhhhhh
Confidence 4567788886543 12 14888777311 1 244444333 32 788999999
Q ss_pred cCCC
Q 043301 91 DECS 94 (244)
Q Consensus 91 ~~~~ 94 (244)
+.+.
T Consensus 958 KRFS 961 (1007)
T KOG3623|consen 958 KRFS 961 (1007)
T ss_pred hhcc
Confidence 9764
No 262
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=26.88 E-value=43 Score=22.20 Aligned_cols=32 Identities=16% Similarity=0.310 Sum_probs=25.8
Q ss_pred ccccccccCCCC--CcEEeCCCCCccccccccCC
Q 043301 33 IICDICETSLQG--PAYGCGTCEFSIHKSCAELP 64 (244)
Q Consensus 33 ~~C~~C~~~i~g--~~Y~C~~C~F~lH~~Ca~~p 64 (244)
..|..|+..... ..++|..|+-.+...|+..-
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~ 36 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNR 36 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCe
Confidence 468899876532 47999999999999998754
No 263
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=26.49 E-value=38 Score=33.17 Aligned_cols=55 Identities=24% Similarity=0.538 Sum_probs=37.1
Q ss_pred ccccccccccCCCC---CcEEeCCCCCccccccccCCCcCCCCCCCCcceEeecCcccccccccC
Q 043301 31 VVIICDICETSLQG---PAYGCGTCEFSIHKSCAELPLKIDHPFHCHPLTLSKTNHHRCDACLDE 92 (244)
Q Consensus 31 ~~~~C~~C~~~i~g---~~Y~C~~C~F~lH~~Ca~~p~~i~hp~H~H~L~L~~~~~~~Cd~Cg~~ 92 (244)
....|..|.....| -..+|..|+=-+|+.|+.-+.+..-. .-++ ..++|+.|...
T Consensus 167 ~n~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~--~D~~-----~~w~C~~C~~~ 224 (464)
T KOG4323|consen 167 VNLQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELA--GDPF-----YEWFCDVCNRG 224 (464)
T ss_pred ccceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhc--cCcc-----ceEeehhhccc
Confidence 34569999877644 46899999999999998754321100 0011 46789999875
No 264
>PLN02270 phospholipase D alpha
Probab=26.44 E-value=26 Score=36.64 Aligned_cols=32 Identities=13% Similarity=0.159 Sum_probs=17.5
Q ss_pred CcchhhHHHHhhhhcccccccccCCCCceeEeec--CCCCChhh
Q 043301 171 QLDDITENIESEIAGIKKTLSETGDQGSKVTISE--SYPYSDDT 212 (244)
Q Consensus 171 ~l~d~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~--~~~~~~~~ 212 (244)
+-||||+.+ .|....=-.|+ +|++ .||.|+|+
T Consensus 45 ~~~~~y~tv---------~~~~a~v~rtr-~~~~~~~~p~w~e~ 78 (808)
T PLN02270 45 GESQLYATI---------DLEKARVGRTR-KIENEPKNPRWYES 78 (808)
T ss_pred CCCCceEEE---------EeCCcEEEEEe-ecCCCCCCCccccc
Confidence 456777663 33333333455 5553 48888884
No 265
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=25.75 E-value=54 Score=30.81 Aligned_cols=34 Identities=24% Similarity=0.495 Sum_probs=28.4
Q ss_pred ccccccccccCCC-CCcEEeCCC-CCccccccccCC
Q 043301 31 VVIICDICETSLQ-GPAYGCGTC-EFSIHKSCAELP 64 (244)
Q Consensus 31 ~~~~C~~C~~~i~-g~~Y~C~~C-~F~lH~~Ca~~p 64 (244)
....|+.|...+. ..+-+|.+| .|+++..|....
T Consensus 4 ~k~hCdvC~~d~T~~~~i~C~eC~~~DLC~pCF~~g 39 (432)
T COG5114 4 VKIHCDVCFLDMTDLTFIKCNECPAVDLCLPCFVNG 39 (432)
T ss_pred ceeeehHHHHhhhcceeeeeecccccceehhhhhcc
Confidence 3578999998885 468999999 899999998654
No 266
>KOG1044 consensus Actin-binding LIM Zn-finger protein Limatin involved in axon guidance [Signal transduction mechanisms; Cytoskeleton]
Probab=25.44 E-value=27 Score=35.18 Aligned_cols=29 Identities=21% Similarity=0.564 Sum_probs=20.1
Q ss_pred ccccccccccCC-CCC------------cEEeCCCCCccccc
Q 043301 31 VVIICDICETSL-QGP------------AYGCGTCEFSIHKS 59 (244)
Q Consensus 31 ~~~~C~~C~~~i-~g~------------~Y~C~~C~F~lH~~ 59 (244)
++..|.+|+..+ .|. .|+|..|.-+|+..
T Consensus 132 ~ps~cagc~~~lk~gq~llald~qwhv~cfkc~~c~~vL~ge 173 (670)
T KOG1044|consen 132 GPSTCAGCGEELKNGQALLALDKQWHVSCFKCKSCSAVLNGE 173 (670)
T ss_pred CCccccchhhhhhccceeeeeccceeeeeeehhhhcccccce
Confidence 466788888876 331 57888887777643
No 267
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=24.39 E-value=42 Score=30.79 Aligned_cols=77 Identities=21% Similarity=0.441 Sum_probs=50.0
Q ss_pred cccccccccC--C---CC---CcEEeCCCCCccccccccCCCcCCCCCCCCcceEeec-----CcccccccccC-CCCee
Q 043301 32 VIICDICETS--L---QG---PAYGCGTCEFSIHKSCAELPLKIDHPFHCHPLTLSKT-----NHHRCDACLDE-CSGMA 97 (244)
Q Consensus 32 ~~~C~~C~~~--i---~g---~~Y~C~~C~F~lH~~Ca~~p~~i~hp~H~H~L~L~~~-----~~~~Cd~Cg~~-~~g~~ 97 (244)
.-+|+.|-.. + .| -.-.|+.|+-.=|+.|..+...+.-. +.+| .-..|.+||-. -....
T Consensus 224 n~YCDFclgdsr~nkkt~~peelvscsdcgrsghpsclqft~nm~~a-------vk~yrwqcieck~csicgtsenddql 296 (336)
T KOG1244|consen 224 NPYCDFCLGDSRENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAA-------VKTYRWQCIECKYCSICGTSENDDQL 296 (336)
T ss_pred CcccceeccccccccccCCchhhcchhhcCCCCCcchhhhhHHHHHH-------HHhheeeeeecceeccccCcCCCcee
Confidence 4578888332 2 23 25788899888888887764321100 0111 34567788874 34456
Q ss_pred EEcCCccceeccccccCc
Q 043301 98 YRCHECCYNLHYHCTALK 115 (244)
Q Consensus 98 Y~C~~Cd~~lH~~Ca~~p 115 (244)
..|..||--.|+-|.+-|
T Consensus 297 lfcddcdrgyhmyclspp 314 (336)
T KOG1244|consen 297 LFCDDCDRGYHMYCLSPP 314 (336)
T ss_pred EeecccCCceeeEecCCC
Confidence 889999999999998755
No 268
>PF09332 Mcm10: Mcm10 replication factor; InterPro: IPR015411 Mcm10 is a eukaryotic DNA replication factor that regulates the stability and chromatin association of DNA polymerase alpha []. ; PDB: 2KWQ_A.
Probab=23.27 E-value=24 Score=33.27 Aligned_cols=59 Identities=22% Similarity=0.513 Sum_probs=26.0
Q ss_pred cEEeCCCC---CccccccccCCCcCCCCCCCCcceEeec--CcccccccccCCCC-e---eEEcCCccceecccccc
Q 043301 46 AYGCGTCE---FSIHKSCAELPLKIDHPFHCHPLTLSKT--NHHRCDACLDECSG-M---AYRCHECCYNLHYHCTA 113 (244)
Q Consensus 46 ~Y~C~~C~---F~lH~~Ca~~p~~i~hp~H~H~L~L~~~--~~~~Cd~Cg~~~~g-~---~Y~C~~Cd~~lH~~Ca~ 113 (244)
.+.|.+|+ |...++|.. +.|++..+.. -.+.|..|+..... . .-.|..|+-.-=.++++
T Consensus 252 av~C~~C~yt~~~~~~~C~~---------~~H~l~~~~a~KRFFkC~~C~~Rt~sl~r~P~~~C~~Cg~~~wer~~M 319 (344)
T PF09332_consen 252 AVTCKQCKYTAFKPSDRCKE---------EGHPLKWHDAVKRFFKCKDCGNRTISLERLPKKHCSNCGSSKWERTGM 319 (344)
T ss_dssp EEEETTT--EESS--HHHHH---------TT--EEEEEEE-EEEE-T-TS-EEEESSSS--S--TTT-S---EEE--
T ss_pred EEEcCCCCCcccCcchhHHh---------cCCceEEeeeeeeeEECCCCCCeeeecccCCCCCCCcCCcCceeehhh
Confidence 68999997 567778865 4677776654 45788888885211 1 13566665433333433
No 269
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=22.95 E-value=30 Score=31.56 Aligned_cols=71 Identities=20% Similarity=0.448 Sum_probs=42.7
Q ss_pred ccccccccCCC---CCcEEeCCCCCccccccccCCCcCCCCCCCCcceEeecCcccccccccCCCCeeEEcCCccceecc
Q 043301 33 IICDICETSLQ---GPAYGCGTCEFSIHKSCAELPLKIDHPFHCHPLTLSKTNHHRCDACLDECSGMAYRCHECCYNLHY 109 (244)
Q Consensus 33 ~~C~~C~~~i~---g~~Y~C~~C~F~lH~~Ca~~p~~i~hp~H~H~L~L~~~~~~~Cd~Cg~~~~g~~Y~C~~Cd~~lH~ 109 (244)
..|.-|.+.+| |-.|+|..|+-+|++. +..-|+-.-+..-...+.|..|.+.+.-.-++|.+|=-+-|+
T Consensus 126 a~C~EC~R~vw~hGGrif~CsfC~~flCED--------DQFEHQAsCQvLe~E~~KC~SCNrlGq~sCLRCK~cfCddHv 197 (314)
T PF06524_consen 126 AVCIECERGVWDHGGRIFKCSFCDNFLCED--------DQFEHQASCQVLESETFKCQSCNRLGQYSCLRCKICFCDDHV 197 (314)
T ss_pred cEeeeeecccccCCCeEEEeecCCCeeecc--------chhhhhhhhhhhhcccccccccccccchhhhheeeeehhhhh
Confidence 57888998886 4579999997666532 111233222222225778888988765445566655334454
Q ss_pred cc
Q 043301 110 HC 111 (244)
Q Consensus 110 ~C 111 (244)
+-
T Consensus 198 rr 199 (314)
T PF06524_consen 198 RR 199 (314)
T ss_pred hh
Confidence 44
No 270
>PHA00626 hypothetical protein
Probab=22.48 E-value=65 Score=22.52 Aligned_cols=14 Identities=36% Similarity=0.800 Sum_probs=10.5
Q ss_pred eEEcCCccceeccc
Q 043301 97 AYRCHECCYNLHYH 110 (244)
Q Consensus 97 ~Y~C~~Cd~~lH~~ 110 (244)
.|+|..|+|..-..
T Consensus 23 rYkCkdCGY~ft~~ 36 (59)
T PHA00626 23 DYVCCDCGYNDSKD 36 (59)
T ss_pred ceEcCCCCCeechh
Confidence 59999998866443
No 271
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=22.34 E-value=44 Score=17.40 Aligned_cols=8 Identities=25% Similarity=0.866 Sum_probs=3.0
Q ss_pred EEeCCCCC
Q 043301 47 YGCGTCEF 54 (244)
Q Consensus 47 Y~C~~C~F 54 (244)
|.|..|++
T Consensus 1 ~~C~~C~~ 8 (24)
T PF13894_consen 1 FQCPICGK 8 (24)
T ss_dssp EE-SSTS-
T ss_pred CCCcCCCC
Confidence 44555543
No 272
>PRK13413 mpi multiple promoter invertase; Provisional
Probab=22.30 E-value=41 Score=28.40 Aligned_cols=23 Identities=9% Similarity=0.131 Sum_probs=17.8
Q ss_pred hhhhcCCCCccceeEEEEeccCcccccC
Q 043301 216 FILRLQNSLRSKNMSVEFWDLDDVLVNV 243 (244)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (244)
.+-.++++| .|-||++||.+||+
T Consensus 55 ll~~~~~gd-----~lvv~~ldRl~R~~ 77 (200)
T PRK13413 55 LLKKMRKGD-----ILIVSELSRLGRNL 77 (200)
T ss_pred HHHHHhCCC-----EEEEEeCchhcCCH
Confidence 444577775 38899999999996
No 273
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=22.21 E-value=65 Score=34.80 Aligned_cols=36 Identities=25% Similarity=0.627 Sum_probs=29.8
Q ss_pred CcccccccccC-CC--CeeEEcCCccceeccccccCcCc
Q 043301 82 NHHRCDACLDE-CS--GMAYRCHECCYNLHYHCTALKPS 117 (244)
Q Consensus 82 ~~~~Cd~Cg~~-~~--g~~Y~C~~Cd~~lH~~Ca~~p~~ 117 (244)
....|.+|... .. .....|..|+..+|..|...++.
T Consensus 218 ~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cygi~~i 256 (1051)
T KOG0955|consen 218 EDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYGIPFI 256 (1051)
T ss_pred CCccceeecccccCCCceEEEcCCCcchhhhhccCCCCC
Confidence 57899999885 33 67899999999999999886643
No 274
>cd03768 SR_ResInv Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some
Probab=21.74 E-value=54 Score=25.04 Aligned_cols=23 Identities=13% Similarity=0.114 Sum_probs=17.1
Q ss_pred hhhhcCCCCccceeEEEEeccCcccccC
Q 043301 216 FILRLQNSLRSKNMSVEFWDLDDVLVNV 243 (244)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (244)
++-.+++.| .|=||++||.+||.
T Consensus 48 ll~~~~~~d-----~lvv~~~dRl~R~~ 70 (126)
T cd03768 48 LLEDLREGD-----TLVVTKLDRLGRST 70 (126)
T ss_pred HHHhCcCCC-----EEEEEEcchhcCcH
Confidence 444566444 48899999999985
No 275
>PF13842 Tnp_zf-ribbon_2: DDE_Tnp_1-like zinc-ribbon
Probab=21.60 E-value=76 Score=19.25 Aligned_cols=25 Identities=20% Similarity=0.725 Sum_probs=15.9
Q ss_pred cccccccCCC--CCcEEeCCCCCcccc
Q 043301 34 ICDICETSLQ--GPAYGCGTCEFSIHK 58 (244)
Q Consensus 34 ~C~~C~~~i~--g~~Y~C~~C~F~lH~ 58 (244)
.|..|..... ...|.|+.|+..|+.
T Consensus 2 rC~vC~~~k~rk~T~~~C~~C~v~lC~ 28 (32)
T PF13842_consen 2 RCKVCSKKKRRKDTRYMCSKCDVPLCV 28 (32)
T ss_pred CCeECCcCCccceeEEEccCCCCcccC
Confidence 4666655432 268999999866553
No 276
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=21.20 E-value=56 Score=31.74 Aligned_cols=23 Identities=17% Similarity=0.551 Sum_probs=19.4
Q ss_pred CcccccccccCCCCeeEEcCCcc
Q 043301 82 NHHRCDACLDECSGMAYRCHECC 104 (244)
Q Consensus 82 ~~~~Cd~Cg~~~~g~~Y~C~~Cd 104 (244)
..+.|..||-....|..+|..|+
T Consensus 6 ~~y~C~~Cg~~~~~~~g~Cp~C~ 28 (454)
T TIGR00416 6 SKFVCQHCGADSPKWQGKCPACH 28 (454)
T ss_pred CeEECCcCCCCCccccEECcCCC
Confidence 35789999998888999999985
No 277
>PRK11823 DNA repair protein RadA; Provisional
Probab=21.17 E-value=55 Score=31.66 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=18.6
Q ss_pred CcccccccccCCCCeeEEcCCcc
Q 043301 82 NHHRCDACLDECSGMAYRCHECC 104 (244)
Q Consensus 82 ~~~~Cd~Cg~~~~g~~Y~C~~Cd 104 (244)
..+.|..||-....|..+|..|+
T Consensus 6 ~~y~C~~Cg~~~~~~~g~Cp~C~ 28 (446)
T PRK11823 6 TAYVCQECGAESPKWLGRCPECG 28 (446)
T ss_pred CeEECCcCCCCCcccCeeCcCCC
Confidence 35678888888888888888885
No 278
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=20.73 E-value=85 Score=19.86 Aligned_cols=23 Identities=17% Similarity=0.600 Sum_probs=13.2
Q ss_pred ccccccCCCCCcEEeCCCCCccc
Q 043301 35 CDICETSLQGPAYGCGTCEFSIH 57 (244)
Q Consensus 35 C~~C~~~i~g~~Y~C~~C~F~lH 57 (244)
|..|+....-..+.|..|+-.++
T Consensus 1 C~~C~~~~~l~~f~C~~C~~~FC 23 (39)
T smart00154 1 CHFCRKKVGLTGFKCRHCGNLFC 23 (39)
T ss_pred CcccCCcccccCeECCccCCccc
Confidence 45566554333777777765543
No 279
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=20.66 E-value=70 Score=27.56 Aligned_cols=32 Identities=31% Similarity=0.743 Sum_probs=24.1
Q ss_pred ccccccccccC--CC--C--CcEEeCCCCCcccccccc
Q 043301 31 VVIICDICETS--LQ--G--PAYGCGTCEFSIHKSCAE 62 (244)
Q Consensus 31 ~~~~C~~C~~~--i~--g--~~Y~C~~C~F~lH~~Ca~ 62 (244)
..+.|..|... |+ . ..++|..|+-.+|..|..
T Consensus 151 kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~ 188 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFR 188 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcC
Confidence 35788888753 32 2 478999999999999976
No 280
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=20.66 E-value=68 Score=23.26 Aligned_cols=34 Identities=21% Similarity=0.623 Sum_probs=28.3
Q ss_pred CcccccccccCCCCeeEEcC--CccceeccccccCcC
Q 043301 82 NHHRCDACLDECSGMAYRCH--ECCYNLHYHCTALKP 116 (244)
Q Consensus 82 ~~~~Cd~Cg~~~~g~~Y~C~--~Cd~~lH~~Ca~~p~ 116 (244)
....|..|++. .|-...|. .|.-.+|+.||....
T Consensus 35 ~~~~C~~C~~~-~Ga~i~C~~~~C~~~fH~~CA~~~~ 70 (90)
T PF13771_consen 35 RKLKCSICKKK-GGACIGCSHPGCSRSFHVPCARKAG 70 (90)
T ss_pred hCCCCcCCCCC-CCeEEEEeCCCCCcEEChHHHccCC
Confidence 56799999987 57778887 599999999998763
No 281
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=20.54 E-value=50 Score=21.98 Aligned_cols=15 Identities=20% Similarity=0.614 Sum_probs=12.0
Q ss_pred cEEeCCCCCcccccc
Q 043301 46 AYGCGTCEFSIHKSC 60 (244)
Q Consensus 46 ~Y~C~~C~F~lH~~C 60 (244)
.|+|..|++++.+.=
T Consensus 1 ky~C~~CgyvYd~~~ 15 (47)
T PF00301_consen 1 KYQCPVCGYVYDPEK 15 (47)
T ss_dssp EEEETTTSBEEETTT
T ss_pred CcCCCCCCEEEcCCc
Confidence 389999999888543
No 282
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=20.52 E-value=31 Score=36.80 Aligned_cols=71 Identities=20% Similarity=0.217 Sum_probs=45.2
Q ss_pred CcceeeecccccccccCCCCcchhhHHHH-----hhhhcccccccccCCCCceeEeecCCCCChhhhhhhhhh---cCCC
Q 043301 152 PEDLTFHDVFSSFTEKDRNQLDDITENIE-----SEIAGIKKTLSETGDQGSKVTISESYPYSDDTLAQFILR---LQNS 223 (244)
Q Consensus 152 ~~~~~v~~~~~~~~~~~~n~l~d~~~~~~-----~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~ 223 (244)
.+.+-+..|++ |-.+|..+++||+..+. ++|.++.-+|+| .|+.+ .+|. |=.+
T Consensus 207 ~lR~yiyQar~-L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~p---------------twdq~---~~f~~~ei~ge 267 (1105)
T KOG1326|consen 207 PLRSYIYQARA-LGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNP---------------TWDQT---IIFDEVEIYGE 267 (1105)
T ss_pred hhHHHHHHHHh-hcCCCcccCCCchhhhhcccccceeEeecCcCCC---------------Cccce---eeccceeecCc
Confidence 34477788874 78999999999975532 555555666664 47764 3333 2111
Q ss_pred -----CccceeEEEEeccCcccc
Q 043301 224 -----LRSKNMSVEFWDLDDVLV 241 (244)
Q Consensus 224 -----~~~~~~~~~~~~~~~~~~ 241 (244)
+--.-+++||+|-||.--
T Consensus 268 ~~~~~~~ppi~v~e~yd~dr~g~ 290 (1105)
T KOG1326|consen 268 AHLVLKNPPIRVFEVYDLDRSGI 290 (1105)
T ss_pred cchhhcCCCeEEEEeehhhhhch
Confidence 112567899999998543
Done!