BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043302
(71 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FHW7|SKP1B_ARATH SKP1-like protein 1B OS=Arabidopsis thaliana GN=SKP1B PE=1 SV=1
Length = 171
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/57 (77%), Positives = 49/57 (85%)
Query: 1 MSTHKKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVI 57
MST +KITLKS DG+ F++DE VALESQTI+HMI DDC N IPLPNVTSKILSKVI
Sbjct: 1 MSTVRKITLKSSDGENFEIDEAVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVI 57
>sp|Q39255|SKP1A_ARATH SKP1-like protein 1A OS=Arabidopsis thaliana GN=SKP1A PE=1 SV=1
Length = 160
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/53 (73%), Positives = 46/53 (86%)
Query: 5 KKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVI 57
KKI LKS DG++F+V+E VALESQTI HM+ DDCV N +PLPNVTSKIL+KVI
Sbjct: 4 KKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVI 56
>sp|Q9SL93|ASK3_ARATH SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK3 PE=1 SV=1
Length = 163
Score = 79.0 bits (193), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 38/56 (67%), Positives = 45/56 (80%)
Query: 2 STHKKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVI 57
T K I LKS DG++F+V+E VA+ESQTI+HMI DDCV N IPLPNVT IL+KVI
Sbjct: 3 ETKKMIILKSSDGESFEVEEAVAVESQTIKHMIEDDCVDNGIPLPNVTGAILAKVI 58
>sp|Q9LNT9|ASK4_ARATH SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK4 PE=1 SV=1
Length = 163
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/56 (62%), Positives = 44/56 (78%)
Query: 2 STHKKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVI 57
T K I LKS DG++F+++E VA++SQTI+HMI DDC N IPLPNVT IL+KVI
Sbjct: 3 ETKKMIILKSSDGESFEIEEAVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVI 58
>sp|O65674|ASK12_ARATH SKP1-like protein 12 OS=Arabidopsis thaliana GN=ASK12 PE=1 SV=1
Length = 152
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 42/55 (76%)
Query: 3 THKKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVI 57
+ K I L S DG++F+V+E VA++SQTI HM+ DDCV + IPL NV SKIL KVI
Sbjct: 2 SSKMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVI 56
>sp|O49484|ASK11_ARATH SKP1-like protein 11 OS=Arabidopsis thaliana GN=ASK11 PE=1 SV=1
Length = 152
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/53 (62%), Positives = 41/53 (77%)
Query: 5 KKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVI 57
K I L S DG++F+V+E VA++SQTI HM+ DDCV + IPL NV SKIL KVI
Sbjct: 4 KMIVLMSSDGQSFEVEEAVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVI 56
>sp|O81058|ASK19_ARATH SKP1-like protein 19 OS=Arabidopsis thaliana GN=ASK19 PE=1 SV=1
Length = 200
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 42/55 (76%)
Query: 5 KKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVINL 59
KKI L S DG++FKV+EVVA + Q + H+I DDC NKIP+PNVT +IL+KVI
Sbjct: 4 KKIVLTSSDGESFKVEEVVARKLQIVGHIIEDDCATNKIPIPNVTGEILAKVIEY 58
>sp|Q9M1X5|ASK13_ARATH SKP1-like protein 13 OS=Arabidopsis thaliana GN=ASK13 PE=1 SV=1
Length = 154
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/53 (60%), Positives = 41/53 (77%)
Query: 5 KKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVI 57
K + L S DG++F+V+E VA++SQTI HMI DDCV N +P+ NVT ILSKVI
Sbjct: 3 KMVMLLSSDGESFQVEEAVAVQSQTIAHMIEDDCVANGVPIANVTGVILSKVI 55
>sp|Q9LSX8|ASK10_ARATH SKP1-like protein 10 OS=Arabidopsis thaliana GN=ASK10 PE=1 SV=1
Length = 152
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/57 (61%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Query: 1 MSTHKKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVI 57
MST KKI LKS DG +F+V+E A + QTI HM DDC N IPLP VT KIL VI
Sbjct: 1 MST-KKIILKSSDGHSFEVEEEAACQCQTIAHMSEDDCTDNGIPLPEVTGKILEMVI 56
>sp|Q9LSY0|ASK7_ARATH SKP1-like protein 7 OS=Arabidopsis thaliana GN=ASK7 PE=2 SV=1
Length = 125
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Query: 1 MSTHKKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVI 57
MST KKI LKS DGK F+++E A + QTI HMI +C N IP+ NVTS+IL VI
Sbjct: 1 MST-KKIMLKSSDGKMFEIEEETARQCQTIAHMIEAECTDNVIPVSNVTSEILEMVI 56
>sp|O81057|ASK14_ARATH SKP1-like protein 14 OS=Arabidopsis thaliana GN=ASK14 PE=1 SV=1
Length = 149
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 43/59 (72%), Gaps = 1/59 (1%)
Query: 1 MSTHKKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVINL 59
MS++K I L S DG++F+V+E VA + + +EHMI DDCV ++PL NVT KILS V+
Sbjct: 1 MSSNK-IVLSSSDGESFEVEEAVARKLKIVEHMIEDDCVVTEVPLQNVTGKILSIVVEY 58
>sp|Q9M1X4|ASK5_ARATH SKP1-like protein 5 OS=Arabidopsis thaliana GN=ASK5 PE=1 SV=1
Length = 153
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 41/58 (70%), Gaps = 2/58 (3%)
Query: 1 MSTHKKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVIN 58
MST KI LKS DGK+F++DE VA +S I HM+ D C + IPL NVTSKIL VI+
Sbjct: 1 MST--KIMLKSSDGKSFEIDEDVARKSIAINHMVEDGCATDVIPLRNVTSKILKIVID 56
>sp|Q1PEL7|ASK15_ARATH SKP1-like protein 15 OS=Arabidopsis thaliana GN=ASK15 PE=2 SV=2
Length = 177
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 40/52 (76%)
Query: 6 KITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVI 57
KI L S DG++F+V+EVVA + Q ++H++ DDCV N+IPL NVT ILS V+
Sbjct: 5 KIVLTSSDGESFQVEEVVARKLQIVKHLLEDDCVINEIPLQNVTGNILSIVL 56
>sp|Q9LSX9|ASK9_ARATH SKP1-like protein 9 OS=Arabidopsis thaliana GN=ASK9 PE=1 SV=1
Length = 153
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 40/58 (68%), Gaps = 2/58 (3%)
Query: 1 MSTHKKITLKSLDGKAFKVDEVVALESQTI-EHMIGDDCVKNKIPLPNVTSKILSKVI 57
MST KKI LKS DG +F+V+E A + Q I HM +DC N IPLPNVT KIL+ VI
Sbjct: 1 MST-KKIILKSSDGHSFEVEEEAARQCQIIIAHMSENDCTDNGIPLPNVTGKILAMVI 57
>sp|Q9SL65|ASK17_ARATH SKP1-like protein 17 OS=Arabidopsis thaliana GN=ASK17 PE=1 SV=1
Length = 150
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 34/53 (64%)
Query: 5 KKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVI 57
KKI L S D + F++DE VA + Q + HMI DDC I L NVT KIL+ +I
Sbjct: 4 KKIVLTSSDDECFEIDEAVARKMQMVAHMIDDDCADKAIRLQNVTGKILAIII 56
>sp|Q9SY65|ASK18_ARATH SKP1-like protein 18 OS=Arabidopsis thaliana GN=ASK18 PE=1 SV=2
Length = 158
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 35/52 (67%)
Query: 6 KITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVI 57
KI L S DG++F++DE VA + I HM+ D+C IPL NVT ILSK+I
Sbjct: 5 KILLTSSDGESFEIDEAVARKFLIIVHMMEDNCAGEAIPLENVTGDILSKII 56
>sp|O81055|ASK16_ARATH SKP1-like protein 16 OS=Arabidopsis thaliana GN=ASK16 PE=1 SV=1
Length = 170
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 34/52 (65%)
Query: 6 KITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVI 57
KI L S D ++F+V+E VA + + I HMI DDC IPL NVT IL+ VI
Sbjct: 5 KIVLTSSDDESFEVEEAVARKLKVIAHMIDDDCADKAIPLENVTGNILALVI 56
>sp|Q9LSY1|ASK8_ARATH SKP1-like protein 8 OS=Arabidopsis thaliana GN=ASK8 PE=2 SV=1
Length = 152
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 1 MSTHKKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVI 57
MST KKI LKS +GK F+++E A + QTI HMI +C N I + +TS+IL VI
Sbjct: 1 MST-KKIMLKSSEGKTFEIEEETARQCQTIAHMIEAECTDNVILVLKMTSEILEMVI 56
>sp|Q8NK13|SKP1_NEUCR E3 ubiquitin ligase complex SCF subunit scon-3 OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=scon-3 PE=1 SV=1
Length = 171
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 4/59 (6%)
Query: 5 KKITLKSLDGKAFKVDEVVALESQTIEHMI---GDDCVKNK-IPLPNVTSKILSKVINL 59
+K++L+S DG+ VD VVA S I+++I GD+ V N+ IPLPNV +L KV+
Sbjct: 10 QKVSLQSNDGQIITVDRVVAERSLLIKNLIEDLGDEAVMNEAIPLPNVNEPVLRKVVEW 68
>sp|Q71U00|SKP1_XENLA S-phase kinase-associated protein 1 OS=Xenopus laevis GN=skp1
PE=1 SV=3
Length = 163
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 11/63 (17%)
Query: 7 ITLKSLDGKAFKVDEVVALESQTIEHMI--------GDDCVKNKIPLPNVTSKILSKVIN 58
I L+S DG+ F+VD +A +S TI+ M+ GDD + +PLPNV + IL KVI
Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDD---DPVPLPNVNAAILKKVIQ 60
Query: 59 LLT 61
T
Sbjct: 61 WCT 63
>sp|Q5R512|SKP1_PONAB S-phase kinase-associated protein 1 OS=Pongo abelii GN=SKP1 PE=2
SV=1
Length = 163
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 11/63 (17%)
Query: 7 ITLKSLDGKAFKVDEVVALESQTIEHMI--------GDDCVKNKIPLPNVTSKILSKVIN 58
I L+S DG+ F+VD +A +S TI+ M+ GDD + +PLPNV + IL KVI
Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDD---DPVPLPNVNAAILKKVIQ 60
Query: 59 LLT 61
T
Sbjct: 61 WCT 63
>sp|Q4R5B9|SKP1_MACFA S-phase kinase-associated protein 1 OS=Macaca fascicularis
GN=SKP1 PE=2 SV=1
Length = 163
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 11/63 (17%)
Query: 7 ITLKSLDGKAFKVDEVVALESQTIEHMI--------GDDCVKNKIPLPNVTSKILSKVIN 58
I L+S DG+ F+VD +A +S TI+ M+ GDD + +PLPNV + IL KVI
Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDD---DPVPLPNVNAAILKKVIQ 60
Query: 59 LLT 61
T
Sbjct: 61 WCT 63
>sp|P63208|SKP1_HUMAN S-phase kinase-associated protein 1 OS=Homo sapiens GN=SKP1 PE=1
SV=2
Length = 163
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 11/63 (17%)
Query: 7 ITLKSLDGKAFKVDEVVALESQTIEHMI--------GDDCVKNKIPLPNVTSKILSKVIN 58
I L+S DG+ F+VD +A +S TI+ M+ GDD + +PLPNV + IL KVI
Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDD---DPVPLPNVNAAILKKVIQ 60
Query: 59 LLT 61
T
Sbjct: 61 WCT 63
>sp|Q5ZKF5|SKP1_CHICK S-phase kinase-associated protein 1 OS=Gallus gallus GN=SKP1 PE=2
SV=1
Length = 163
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 11/63 (17%)
Query: 7 ITLKSLDGKAFKVDEVVALESQTIEHMI--------GDDCVKNKIPLPNVTSKILSKVIN 58
I L+S DG+ F+VD +A +S TI+ M+ GDD + +PLPNV + IL KVI
Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDD---DPVPLPNVNAAILKKVIQ 60
Query: 59 LLT 61
T
Sbjct: 61 WCT 63
>sp|P63209|SKP1_CAVPO S-phase kinase-associated protein 1 OS=Cavia porcellus GN=SKP1
PE=2 SV=2
Length = 163
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 11/63 (17%)
Query: 7 ITLKSLDGKAFKVDEVVALESQTIEHMI--------GDDCVKNKIPLPNVTSKILSKVIN 58
I L+S DG+ F+VD +A +S TI+ M+ GDD + +PLPNV + IL KVI
Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDD---DPVPLPNVNAAILKKVIQ 60
Query: 59 LLT 61
T
Sbjct: 61 WCT 63
>sp|Q3ZCF3|SKP1_BOVIN S-phase kinase-associated protein 1 OS=Bos taurus GN=SKP1 PE=2
SV=1
Length = 163
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 11/63 (17%)
Query: 7 ITLKSLDGKAFKVDEVVALESQTIEHMI--------GDDCVKNKIPLPNVTSKILSKVIN 58
I L+S DG+ F+VD +A +S TI+ M+ GDD + +PLPNV + IL KVI
Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDD---DPVPLPNVNAAILKKVIQ 60
Query: 59 LLT 61
T
Sbjct: 61 WCT 63
>sp|Q6PEC4|SKP1_RAT S-phase kinase-associated protein 1 OS=Rattus norvegicus GN=Skp1
PE=2 SV=3
Length = 163
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 11/63 (17%)
Query: 7 ITLKSLDGKAFKVDEVVALESQTIEHMI--------GDDCVKNKIPLPNVTSKILSKVIN 58
I L+S DG+ F+VD +A +S TI+ M+ GDD + +PLPNV + IL KVI
Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDD---DPVPLPNVNAAILKKVIQ 60
Query: 59 LLT 61
T
Sbjct: 61 WCT 63
>sp|Q9WTX5|SKP1_MOUSE S-phase kinase-associated protein 1 OS=Mus musculus GN=Skp1 PE=1
SV=3
Length = 163
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 11/63 (17%)
Query: 7 ITLKSLDGKAFKVDEVVALESQTIEHMI--------GDDCVKNKIPLPNVTSKILSKVIN 58
I L+S DG+ F+VD +A +S TI+ M+ GDD + +PLPNV + IL KVI
Sbjct: 4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDD---DPVPLPNVNAAILKKVIQ 60
Query: 59 LLT 61
T
Sbjct: 61 WCT 63
>sp|P52285|SKP1A_DICDI SCF ubiquitin ligase complex protein SKP1a OS=Dictyostelium
discoideum GN=fpaA PE=1 SV=1
Length = 162
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 7 ITLKSLDGKAFKVDEVVALESQTIEHMIGD-DCVKNKIPLPNVTSKILSKVINL 59
+ L+S D K F++++ +A S TI++MI D + IPLPNVTS IL KV++
Sbjct: 4 VKLESSDEKVFEIEKEIACMSVTIKNMIEDIGESDSPIPLPNVTSTILEKVLDY 57
>sp|Q557E4|SKP1B_DICDI SCF ubiquitin ligase complex protein SKP1b OS=Dictyostelium
discoideum GN=fpaB-1 PE=1 SV=1
Length = 162
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 7 ITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNK-IPLPNVTSKILSKVINL 59
+ L+S D K F++++ +A S TI++MI D + IPLPNVTS IL KV++
Sbjct: 4 VKLESSDEKVFEIEKEIACMSVTIKNMIEDIGESDAPIPLPNVTSTILEKVLDY 57
>sp|Q9Y709|SKP1_SCHPO Suppressor of kinetochore protein 1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=skp1 PE=1 SV=1
Length = 161
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 6 KITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKN-KIPLPNVTSKILSKVINL 59
KI L S D + F VD+++A S I++M+ D N IPLPNV+S +L KV+
Sbjct: 3 KIKLISSDNEEFVVDQLIAERSMLIKNMLEDVGEINVPIPLPNVSSNVLRKVLEW 57
>sp|Q1PEF6|ASK6_ARATH SKP1-like protein 6 OS=Arabidopsis thaliana GN=ASK6 PE=3 SV=1
Length = 85
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 20/28 (71%)
Query: 30 IEHMIGDDCVKNKIPLPNVTSKILSKVI 57
I+ M DDC N IPLPNVTSKIL VI
Sbjct: 3 IKGMAEDDCADNGIPLPNVTSKILLLVI 30
>sp|Q0CA59|SKP1_ASPTN E3 ubiquitin ligase complex SCF subunit sconC OS=Aspergillus
terreus (strain NIH 2624 / FGSC A1156) GN=sconC PE=3
SV=1
Length = 161
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 1 MSTHKKITLKSLDGKAFKVDEVVALESQTIEHMIGD-DCVKNKIPLPNVTSKILSKVINL 59
MST + S DG VD VA S I++M+ D IP+PNV +L KVI
Sbjct: 1 MSTSPTLVFTSSDGVDITVDRDVAERSLLIKNMLEDLGETGEAIPIPNVNEAVLKKVIEW 60
Query: 60 LTVSSTSKP 68
T P
Sbjct: 61 CTHHKNDPP 69
>sp|Q5KU00|SKP1_ASPOR E3 ubiquitin ligase complex SCF subunit sconC OS=Aspergillus
oryzae (strain ATCC 42149 / RIB 40) GN=sconC PE=3 SV=1
Length = 161
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 7 ITLKSLDGKAFKVDEVVALESQTIEHMIGD-DCVKNKIPLPNVTSKILSKVINLLTVSST 65
+T S DG V+ VA SQ I++M+ D IP+PNV +L KVI T
Sbjct: 6 LTFTSSDGVDIPVERDVAERSQLIKNMLEDLGETGEPIPIPNVNEAVLKKVIEWCTHHKN 65
Query: 66 SKP 68
P
Sbjct: 66 DPP 68
>sp|B8NSJ0|SKP1_ASPFN E3 ubiquitin ligase complex SCF subunit sconC OS=Aspergillus
flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 /
JCM 12722 / SRRC 167) GN=sconC PE=3 SV=1
Length = 161
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 7 ITLKSLDGKAFKVDEVVALESQTIEHMIGD-DCVKNKIPLPNVTSKILSKVINLLTVSST 65
+T S DG V+ VA SQ I++M+ D IP+PNV +L KVI T
Sbjct: 6 LTFTSSDGVDIPVERDVAERSQLIKNMLEDLGETGEPIPIPNVNEAVLKKVIEWCTHHKN 65
Query: 66 SKP 68
P
Sbjct: 66 DPP 68
>sp|Q751F9|ELOC_ASHGO Elongin-C OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=ELC1 PE=3 SV=1
Length = 100
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 1 MSTHKKITLKSLDGKAFKVDEVVALESQTIEHMIGD---DCVKNKIPLPNVTSKILSKVI 57
M+ +TL S DGK+F+V A+ S T+ M+ + + K+ LP + S +L+KV+
Sbjct: 1 MTPTSHVTLVSSDGKSFEVPRERAMLSPTLAKMLDSSFAEAKEAKVTLPTIESSMLAKVV 60
Query: 58 NLL 60
L
Sbjct: 61 EYL 63
>sp|Q8TGW7|SKP1_ARTOT E3 ubiquitin ligase complex SCF subunit sconC OS=Arthroderma otae
GN=sconC PE=2 SV=1
Length = 165
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 6 KITLKSLDGKAFKVDEVVALESQTIEHMIGD-DCVKNKIPLPNVTSKILSKVINL 59
KITL S DG +D VA S I++M+ D IP+PNV +L KVI
Sbjct: 8 KITLTSSDGVDITIDRQVAERSILIKNMLKDLGDSGEAIPIPNVNESVLKKVIEW 62
>sp|A1CZG3|SKP1_NEOFI E3 ubiquitin ligase complex SCF subunit sconC OS=Neosartorya
fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 /
NRRL 181) GN=sconC PE=3 SV=1
Length = 158
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 7 ITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNK-IPLPNVTSKILSKVINLLTVSST 65
+TL S DG VD VA S I++M+ D ++ IP+PNV +L KVI T
Sbjct: 4 VTLTSSDGVDITVDRDVAERSILIKNMLEDLGESDEAIPIPNVNEVVLKKVIEWCTHHKN 63
Query: 66 SKP 68
P
Sbjct: 64 DPP 66
>sp|Q4WTT8|SKP1_ASPFU E3 ubiquitin ligase complex SCF subunit sconC OS=Neosartorya
fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 /
FGSC A1100) GN=sconC PE=3 SV=1
Length = 158
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 7 ITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNK-IPLPNVTSKILSKVINLLTVSST 65
+TL S DG VD VA S I++M+ D ++ IP+PNV +L KVI T
Sbjct: 4 VTLTSSDGVDITVDRDVAERSILIKNMLEDLGESDEAIPIPNVNEVVLKKVIEWCTHHKN 63
Query: 66 SKP 68
P
Sbjct: 64 DPP 66
>sp|B0Y3B5|SKP1_ASPFC E3 ubiquitin ligase complex SCF subunit sconC OS=Neosartorya
fumigata (strain CEA10 / CBS 144.89 / FGSC A1163)
GN=sconC PE=3 SV=1
Length = 158
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 7 ITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNK-IPLPNVTSKILSKVINLLTVSST 65
+TL S DG VD VA S I++M+ D ++ IP+PNV +L KVI T
Sbjct: 4 VTLTSSDGVDITVDRDVAERSILIKNMLEDLGESDEAIPIPNVNEVVLKKVIEWCTHHKN 63
Query: 66 SKP 68
P
Sbjct: 64 DPP 66
>sp|A1C9U5|SKP1_ASPCL E3 ubiquitin ligase complex SCF subunit sconC OS=Aspergillus
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 /
NCTC 3887 / NRRL 1) GN=sconC PE=3 SV=1
Length = 159
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 7 ITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNK-IPLPNVTSKILSKVINLLTVSST 65
+TL S DG VD VA S I++M+ D + IP+PNV +L KVI T
Sbjct: 5 VTLTSSDGVDLTVDRDVAERSVLIKNMLEDLGESGEAIPIPNVNEVVLKKVIEWCTHHKN 64
Query: 66 SKP 68
P
Sbjct: 65 DPP 67
>sp|C5FHU9|SKP1_ARTOC E3 ubiquitin ligase complex SCF subunit sconC OS=Arthroderma otae
(strain ATCC MYA-4605 / CBS 113480) GN=sconC PE=3 SV=1
Length = 165
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 6 KITLKSLDGKAFKVDEVVALESQTIEHMIGD-DCVKNKIPLPNVTSKILSKVINL 59
KITL S DG ++ VA S I++M+ D IP+PNV +L KVI
Sbjct: 8 KITLTSSDGVEITIERQVAERSILIKNMLEDLGDSGEAIPIPNVNESVLKKVIEW 62
>sp|D4ARL8|SKP1_ARTBC E3 ubiquitin ligase complex SCF subunit sconC OS=Arthroderma
benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=sconC
PE=3 SV=1
Length = 164
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 6 KITLKSLDGKAFKVDEVVALESQTIEHMIGD-DCVKNKIPLPNVTSKILSKVINL 59
KITL S DG ++ VA S I++M+ D IP+PNV +L KVI
Sbjct: 8 KITLTSSDGVEVTIERQVAERSILIKNMLEDLGDSGEPIPIPNVNESVLKKVIEW 62
>sp|Q5BAX8|SKP1_EMENI E3 ubiquitin ligase complex SCF subunit sconC OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 /
NRRL 194 / M139) GN=sconC PE=3 SV=2
Length = 161
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 3 THKKITLKSLDGKAFKVDEVVALESQTIEHMIGD--DCVKNKIPLPNVTSKILSKVI 57
K + + S DGK +V VA S I++M+ D D + IP+PNV+ +LSKV+
Sbjct: 2 AEKMLVMTSNDGKNIEVPRDVAERSLLIKNMLEDLGDPTE-PIPIPNVSENVLSKVL 57
>sp|B6QGB9|SKP1_PENMQ E3 ubiquitin ligase complex SCF subunit sconC OS=Penicillium
marneffei (strain ATCC 18224 / CBS 334.59 / QM 7333)
GN=sconC PE=3 SV=1
Length = 160
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 6 KITLKSLDGKAFKVDEVVALESQTIEHMIGD-DCVKNKIPLPNVTSKILSKVINLLT 61
++TL+S D V+ VA S I++++ D + +P+PNV +L KVI T
Sbjct: 4 QVTLQSSDSVDITVERAVAERSMLIKNLLEDLGESEEPVPIPNVNESVLKKVIEWCT 60
>sp|B8MDP8|SKP1_TALSN E3 ubiquitin ligase complex SCF subunit sconC OS=Talaromyces
stipitatus (strain ATCC 10500 / CBS 375.48 / QM 6759 /
NRRL 1006) GN=sconC PE=3 SV=1
Length = 160
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 6 KITLKSLDGKAFKVDEVVALESQTIEHMIGD-DCVKNKIPLPNVTSKILSKVINLLT 61
++TL+S D V+ VA S I++++ D + +P+PNV +L KVI T
Sbjct: 4 QVTLQSSDQVNITVERAVAERSMLIKNLLEDLGESEEPVPIPNVNESVLKKVIEWCT 60
>sp|P12804|FGL2_MOUSE Fibroleukin OS=Mus musculus GN=Fgl2 PE=1 SV=1
Length = 432
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 7 ITLKSLDGKAFKVDEVVALESQTIEHMIGDDC 38
+ + SLDGK K ++SQ ++H+I DC
Sbjct: 175 VVVNSLDGKCSKCPSQEHMQSQPVQHLIYKDC 206
>sp|A0L5M8|DDL_MAGSM D-alanine--D-alanine ligase OS=Magnetococcus sp. (strain MC-1)
GN=ddl PE=3 SV=1
Length = 310
Score = 29.3 bits (64), Expect = 7.6, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 5 KKITLKSLDGKAFKVDEVVALES-QTIEHMIGDDCVKNKIPLPNVTSKILSKVINL 59
+++TL LDG+AF + E+V ++ +H +P PN+ K L V+ +
Sbjct: 187 RELTLSILDGEAFPLIEIVPIDGFYDYDHKYTAGRTNYLVPAPNLDDKSLEAVVKI 242
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.128 0.342
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,518,919
Number of Sequences: 539616
Number of extensions: 657680
Number of successful extensions: 1357
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1314
Number of HSP's gapped (non-prelim): 51
length of query: 71
length of database: 191,569,459
effective HSP length: 43
effective length of query: 28
effective length of database: 168,365,971
effective search space: 4714247188
effective search space used: 4714247188
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)