Query 043302
Match_columns 71
No_of_seqs 140 out of 683
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 05:39:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043302.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043302hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hv2_A Elongin C, ELC1; protei 99.9 3.5E-28 1.2E-32 144.3 4.2 65 1-66 1-67 (99)
2 3v7d_A Suppressor of kinetocho 99.9 2.3E-26 7.9E-31 147.1 7.7 67 1-68 4-77 (169)
3 1vcb_B Protein (elongin C); tu 99.9 1.3E-26 4.5E-31 140.3 5.5 64 3-66 15-83 (112)
4 2fnj_C Transcription elongatio 99.9 1.7E-26 5.6E-31 136.3 4.6 62 5-66 1-67 (96)
5 4ajy_C Transcription elongatio 99.9 1.9E-24 6.5E-29 127.2 5.2 62 6-67 3-69 (97)
6 1fs1_B SKP1, cyclin A/CDK2-ass 99.9 2.3E-24 8E-29 134.1 5.6 62 6-68 3-64 (141)
7 2p1m_A SKP1-like protein 1A; F 99.9 5.8E-25 2E-29 139.2 -0.4 67 1-68 1-67 (160)
8 2ast_A S-phase kinase-associat 99.9 1.4E-21 4.9E-26 123.2 8.1 63 6-68 2-69 (159)
9 2vkp_A BTB/POZ domain-containi 97.5 0.00083 2.8E-08 38.2 7.7 60 6-65 10-75 (109)
10 3ga1_A Nucleus accumbens-assoc 97.4 0.00082 2.8E-08 39.6 6.8 56 6-63 35-92 (129)
11 3b84_A Zinc finger and BTB dom 97.4 0.0011 3.9E-08 38.6 7.2 58 6-65 26-84 (119)
12 2yy9_A Zinc finger and BTB dom 97.3 0.00071 2.4E-08 40.4 6.2 58 6-65 27-85 (135)
13 2vpk_A Myoneurin; transcriptio 97.3 0.0031 1.1E-07 36.3 8.5 58 6-65 24-84 (116)
14 2if5_A Zinc finger and BTB dom 97.3 0.0016 5.4E-08 37.7 7.0 59 6-65 27-89 (120)
15 3fkc_A Transcriptional regulat 97.3 0.0014 4.9E-08 38.2 6.7 56 6-64 33-89 (116)
16 1buo_A POZ domain, protein (pr 97.2 0.0023 7.7E-08 37.3 7.3 57 6-65 30-87 (121)
17 3ohu_A Transcription regulator 97.2 0.0026 9E-08 37.1 7.4 56 6-62 34-92 (125)
18 3htm_A Speckle-type POZ protei 97.2 0.002 7E-08 39.1 7.0 59 6-65 36-98 (172)
19 1r29_A B-cell lymphoma 6 prote 97.1 0.0074 2.5E-07 35.2 8.5 59 6-65 31-93 (127)
20 4eoz_A Speckle-type POZ protei 97.0 0.0022 7.6E-08 37.9 6.0 59 6-65 27-89 (145)
21 2ppi_A Gigaxonin; BTB domain, 97.0 0.0066 2.2E-07 36.6 8.0 58 6-64 49-112 (144)
22 2q81_A MIZ-1 protein; BTB/POZ 96.9 0.0071 2.4E-07 35.1 7.4 58 6-66 29-87 (119)
23 2ihc_A Transcription regulator 96.5 0.015 5.2E-07 33.8 6.8 57 6-63 31-90 (124)
24 2z8h_A Transcription regulator 96.4 0.033 1.1E-06 33.0 8.2 59 6-65 38-99 (138)
25 3hqi_A Speckle-type POZ protei 96.3 0.014 4.8E-07 38.7 6.7 58 6-64 176-237 (312)
26 3hve_A Gigaxonin; ubiquitin, c 96.2 0.017 5.6E-07 37.4 6.4 59 6-65 33-97 (256)
27 3i3n_A Kelch-like protein 11; 95.9 0.0076 2.6E-07 39.5 3.9 58 6-63 34-103 (279)
28 3m5b_A Zinc finger and BTB dom 94.0 0.034 1.2E-06 32.5 2.3 50 6-62 32-82 (119)
29 3v5w_G G gamma-I, guanine nucl 72.4 2.5 8.6E-05 23.5 2.2 21 50-70 37-57 (77)
30 1got_G GT-gamma; complex (GTP- 69.2 1.2 4E-05 24.5 0.3 20 50-69 41-60 (73)
31 3phx_B Ubiquitin-like protein 67.6 2 6.7E-05 22.6 1.0 22 1-22 1-22 (79)
32 2xuv_A HDEB, 10K-L protein; un 63.8 2.8 9.6E-05 23.3 1.2 26 41-66 39-64 (79)
33 1xb4_A VPS25, hypothetical 23. 60.5 3.6 0.00012 26.6 1.4 12 54-65 32-43 (202)
34 3r2c_J Protein NUSE, 30S ribos 57.5 10 0.00035 21.0 2.8 40 1-46 1-43 (83)
35 2ra2_A Putative lipoprotein; X 55.4 9.4 0.00032 20.4 2.3 18 1-19 1-18 (64)
36 3cuq_C Vacuolar protein-sortin 55.1 4.6 0.00016 25.5 1.2 12 54-65 35-46 (176)
37 2hj8_A Interferon-induced 17 k 50.7 14 0.00049 19.7 2.7 21 1-21 1-21 (88)
38 2pjh_A Protein NPL4, nuclear p 47.0 8.8 0.0003 20.7 1.4 19 1-20 1-19 (80)
39 1dj8_A HDEA, protein HNS-depen 45.7 13 0.00043 21.0 2.0 16 51-66 57-72 (89)
40 2io0_B Small ubiquitin-related 42.4 22 0.00074 19.6 2.6 20 1-20 1-21 (91)
41 3gox_A Restriction endonucleas 39.4 19 0.00064 23.3 2.2 17 48-64 183-199 (200)
42 3d3c_J 30S ribosomal protein S 38.9 31 0.0011 19.1 2.9 35 6-46 12-48 (87)
43 1igq_A Transcriptional repress 36.0 50 0.0017 17.4 3.3 20 3-22 32-52 (62)
44 3kdf_A Replication protein A 1 31.2 50 0.0017 19.2 3.1 65 4-69 38-115 (121)
45 2rb6_A Uncharacterized protein 30.8 56 0.0019 17.1 2.9 17 1-19 1-17 (61)
46 1ng7_A Poliovirus 3A-N, genome 30.2 22 0.00075 18.7 1.2 22 44-65 17-43 (60)
47 3v7e_A Ribosome-associated pro 29.1 43 0.0015 17.9 2.4 22 43-64 32-53 (82)
48 2k57_A Putative lipoprotein; s 28.0 68 0.0023 16.7 2.9 17 1-19 1-17 (61)
49 2pi2_E Replication protein A 1 27.6 57 0.002 19.6 3.0 66 3-69 58-136 (142)
50 2kg4_A Growth arrest and DNA-d 26.9 25 0.00086 21.9 1.3 20 50-69 137-156 (165)
51 2jn0_A Hypothetical lipoprotei 26.9 42 0.0014 17.6 2.0 17 1-19 1-17 (61)
52 3k9o_B Ubiquitin, UBB+1; E2-25 26.6 27 0.00092 18.6 1.3 18 5-22 2-19 (96)
53 1d8j_A General transcription f 25.1 33 0.0011 19.0 1.4 18 47-64 7-25 (81)
54 4fbj_B NEDD8; effector-HOST ta 24.3 32 0.0011 18.3 1.3 30 6-35 2-31 (88)
55 3mtn_B UBA80, ubcep1, ubiquiti 24.3 69 0.0024 16.2 2.6 19 4-22 3-21 (85)
56 1wm3_A Ubiquitin-like protein 23.8 72 0.0025 16.3 2.6 15 6-20 3-17 (72)
57 3cg6_A Growth arrest and DNA-d 23.7 22 0.00076 21.8 0.6 19 50-68 119-137 (146)
58 2kk8_A Uncharacterized protein 23.4 33 0.0011 18.2 1.2 33 3-35 9-41 (84)
59 2waa_A Acetyl esterase, xylan 23.4 20 0.00068 23.8 0.3 15 51-65 331-345 (347)
60 3n3k_B Ubiquitin; hydrolase, p 22.5 20 0.00067 18.5 0.1 19 4-22 3-21 (85)
61 3f1p_A Endothelial PAS domain- 21.7 64 0.0022 16.4 2.2 26 3-28 8-33 (117)
62 2dhy_A CUE domain-containing p 21.6 76 0.0026 16.7 2.4 19 45-63 29-47 (67)
63 4hcn_B Polyubiquitin, ubiquiti 21.5 41 0.0014 18.2 1.4 18 5-22 23-40 (98)
64 4dwf_A HLA-B-associated transc 21.5 88 0.003 16.2 2.7 18 5-22 6-23 (90)
65 1v2y_A 3300001G02RIK protein; 21.0 93 0.0032 17.5 2.9 17 5-21 8-24 (105)
66 2gq0_A Chaperone protein HTPG; 20.9 61 0.0021 22.0 2.4 23 11-33 98-120 (303)
67 2uyz_B Small ubiquitin-related 20.4 92 0.0032 15.6 2.6 17 5-21 4-20 (79)
68 2d89_A EHBP1 protein; all alph 20.3 64 0.0022 18.4 2.1 14 54-67 12-25 (119)
69 3iz5_f 60S ribosomal protein L 20.2 82 0.0028 17.9 2.6 24 42-65 46-69 (112)
No 1
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=99.94 E-value=3.5e-28 Score=144.26 Aligned_cols=65 Identities=31% Similarity=0.398 Sum_probs=59.2
Q ss_pred CCCCceEEEEeCCCCEEEEeHHHHHHhHHHHHHhhCCCC--CCcccCCCCCHHHHHHHHHHhhhcCCC
Q 043302 1 MSTHKKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCV--KNKIPLPNVTSKILSKVINLLTVSSTS 66 (71)
Q Consensus 1 ms~~~~i~L~SsDg~~f~v~~~~a~~S~~i~~ml~~~~~--~~~Ipl~~V~~~~L~kViewc~~h~~d 66 (71)
|+ +++|+|+|+||++|+|++++|++|+||++|+++.+. +++||||+|++.+|+||||||+||+++
T Consensus 1 m~-~~~v~L~SsDg~~f~V~~~vA~~S~~ik~ml~~~~e~~~~~Iplp~V~~~iL~kVieyc~~h~~~ 67 (99)
T 1hv2_A 1 MS-QDFVTLVSKDDKEYEISRSAAMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEYLNYNLKY 67 (99)
T ss_dssp CC-CSEEEEEETTTEEEEEEHHHHTTCHHHHHHHHSSTTTCTTEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred CC-CcEEEEEecCCCEEEECHHHHHHhHHHHHHHhcccccCCCceecCCcCHHHHHHHHHHHHHhccc
Confidence 66 569999999999999999999999999999998432 379999999999999999999999954
No 2
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=99.93 E-value=2.3e-26 Score=147.11 Aligned_cols=67 Identities=30% Similarity=0.387 Sum_probs=58.3
Q ss_pred CCCCceEEEEeCCCCEEEEeHHHHHHhHHHHHHhhCCCC-----C--CcccCCCCCHHHHHHHHHHhhhcCCCCC
Q 043302 1 MSTHKKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCV-----K--NKIPLPNVTSKILSKVINLLTVSSTSKP 68 (71)
Q Consensus 1 ms~~~~i~L~SsDg~~f~v~~~~a~~S~~i~~ml~~~~~-----~--~~Ipl~~V~~~~L~kViewc~~h~~d~p 68 (71)
|| +++|+|+|+||++|+|++++|++|+||++||++.+. + ++||||+|++.+|+|||+||+||++++|
T Consensus 4 m~-~~~i~L~SsDG~~F~V~~~vA~~S~tIk~ml~~~~~~~~~~~~~~~IplpnV~s~iL~kVieyc~~h~~~~~ 77 (169)
T 3v7d_A 4 MV-TSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNF 77 (169)
T ss_dssp ---CCEEEEECTTCCEEEEEHHHHTTSHHHHHHHHC-----------CEEECTTCCHHHHHHHHHHHHHTTTCCC
T ss_pred CC-CCeEEEEeCCCCEEEecHHHHHHhHHHHHHHHhcCcccccccCCCceeeCCCCHHHHHHHHHHHHHcccCCC
Confidence 66 479999999999999999999999999999998653 3 7899999999999999999999999864
No 3
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=99.93 E-value=1.3e-26 Score=140.27 Aligned_cols=64 Identities=30% Similarity=0.336 Sum_probs=56.4
Q ss_pred CCceEEEEeCCCCEEEEeHHHHHHhHHHHHHhhCCCC-----CCcccCCCCCHHHHHHHHHHhhhcCCC
Q 043302 3 THKKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCV-----KNKIPLPNVTSKILSKVINLLTVSSTS 66 (71)
Q Consensus 3 ~~~~i~L~SsDg~~f~v~~~~a~~S~~i~~ml~~~~~-----~~~Ipl~~V~~~~L~kViewc~~h~~d 66 (71)
++++|+|+|+||++|+|++++|++|+||++||++.+. +++||||+|++.+|+||||||+||+++
T Consensus 15 ~~~~v~L~SsDG~~F~V~~~~A~~S~tIk~ml~~~~~~~e~~~~~IplpnV~s~iL~kVieyc~~h~~~ 83 (112)
T 1vcb_B 15 DAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRY 83 (112)
T ss_dssp --CEEEEECTTSCEEEEEHHHHHTSHHHHHHSSCC--------CEEECSSCCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCEEEECHHHHHHhHHHHHHHHhcCCcccccCCceeCCCCCHHHHHHHHHHHHHhhhc
Confidence 3579999999999999999999999999999998643 269999999999999999999999864
No 4
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=99.93 E-value=1.7e-26 Score=136.29 Aligned_cols=62 Identities=31% Similarity=0.351 Sum_probs=55.7
Q ss_pred ceEEEEeCCCCEEEEeHHHHHHhHHHHHHhhCCCC-----CCcccCCCCCHHHHHHHHHHhhhcCCC
Q 043302 5 KKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCV-----KNKIPLPNVTSKILSKVINLLTVSSTS 66 (71)
Q Consensus 5 ~~i~L~SsDg~~f~v~~~~a~~S~~i~~ml~~~~~-----~~~Ipl~~V~~~~L~kViewc~~h~~d 66 (71)
++|+|+|+||++|+|++++|++|++|++|+++.|. +++||||+|++.+|+||||||+||+++
T Consensus 1 ~~v~L~SsDg~~f~V~~~~A~~S~~ik~ml~~~~~~~e~~~~~Ipl~~V~~~iL~kVieyc~~h~~~ 67 (96)
T 2fnj_C 1 MYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRY 67 (96)
T ss_dssp CEEEEECTTSCEEEEEHHHHTTSHHHHHHHHCC--------CEEECSSCCHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEecCCCEEEeCHHHHHHhHHHHHHHHccCCcccccCCceeCCCCCHHHHHHHHHHHHHcccc
Confidence 47999999999999999999999999999998543 269999999999999999999999854
No 5
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=99.90 E-value=1.9e-24 Score=127.17 Aligned_cols=62 Identities=31% Similarity=0.359 Sum_probs=55.5
Q ss_pred eEEEEeCCCCEEEEeHHHHHHhHHHHHHhhCCCC-----CCcccCCCCCHHHHHHHHHHhhhcCCCC
Q 043302 6 KITLKSLDGKAFKVDEVVALESQTIEHMIGDDCV-----KNKIPLPNVTSKILSKVINLLTVSSTSK 67 (71)
Q Consensus 6 ~i~L~SsDg~~f~v~~~~a~~S~~i~~ml~~~~~-----~~~Ipl~~V~~~~L~kViewc~~h~~d~ 67 (71)
+|+|+|+||++|+|++++|.+|++|++|+++.|. +++||||+|++.+|+|||+||+||+++.
T Consensus 3 ~v~L~SsDg~~F~v~r~vA~~S~~ik~m~~~~~~~~E~~~~~I~l~~V~~~iL~kViey~~~h~~~~ 69 (97)
T 4ajy_C 3 YVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYT 69 (97)
T ss_dssp EEEEECTTCCEEEEEHHHHTTSHHHHHHHCCC--------CEEECTTSCHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEecCCcEEEecHHHHHHhHHHHHHHHhCCCccccCCCceECCCCCHHHHHHHHHHHHHhcccC
Confidence 7999999999999999999999999999998542 5799999999999999999999997543
No 6
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=99.90 E-value=2.3e-24 Score=134.10 Aligned_cols=62 Identities=42% Similarity=0.582 Sum_probs=58.1
Q ss_pred eEEEEeCCCCEEEEeHHHHHHhHHHHHHhhCCCCCCcccCCCCCHHHHHHHHHHhhhcCCCCC
Q 043302 6 KITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVINLLTVSSTSKP 68 (71)
Q Consensus 6 ~i~L~SsDg~~f~v~~~~a~~S~~i~~ml~~~~~~~~Ipl~~V~~~~L~kViewc~~h~~d~p 68 (71)
.|+|+|+||++|+|++++|++|++|++|+++.| +++||||+|++.+|+|||+||+||+++++
T Consensus 3 ~v~L~SsDg~~f~v~~~vA~~S~~ik~ml~~~~-~~~Ipl~~V~~~iL~kVieyc~~h~~~~~ 64 (141)
T 1fs1_B 3 SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLG-MDPVPLPNVNAAILKKVIQWCTHHKDDPP 64 (141)
T ss_dssp EEEEECTTSCEEEEEGGGGGTCHHHHHHHHHTC-CSSEECTTCCHHHHHHHHHHHHHHTTCC-
T ss_pred eEEEEeCCCCEEEecHHHHHHhHHHHHHHHhcC-CCceecCCcCHHHHHHHHHHHHHhccCCC
Confidence 599999999999999999999999999999866 78999999999999999999999998764
No 7
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=99.89 E-value=5.8e-25 Score=139.21 Aligned_cols=67 Identities=61% Similarity=0.866 Sum_probs=29.9
Q ss_pred CCCCceEEEEeCCCCEEEEeHHHHHHhHHHHHHhhCCCCCCcccCCCCCHHHHHHHHHHhhhcCCCCC
Q 043302 1 MSTHKKITLKSLDGKAFKVDEVVALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVINLLTVSSTSKP 68 (71)
Q Consensus 1 ms~~~~i~L~SsDg~~f~v~~~~a~~S~~i~~ml~~~~~~~~Ipl~~V~~~~L~kViewc~~h~~d~p 68 (71)
|+ +++|+|+|+||++|+|++++|++|++|++|+++.+.+++||||+|++.+|+|||+||+||+.++|
T Consensus 1 ~~-~~~v~L~SsDg~~f~v~~~vA~~S~~ik~ml~~~~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~ 67 (160)
T 2p1m_A 1 MS-AKKIVLKSSDGESFEVEEAVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKRHVEAAA 67 (160)
T ss_dssp --------CCC---------CHHHHTCTTTC------------CCTTSCHHHHHHHHHC---------
T ss_pred CC-CCEEEEEcCCCCEEEECHHHHHHhHHHHHHHHccCCCCceeCCcCcHHHHHHHHHHHHHcccCCC
Confidence 44 56899999999999999999999999999999887778999999999999999999999998753
No 8
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=99.86 E-value=1.4e-21 Score=123.22 Aligned_cols=63 Identities=41% Similarity=0.568 Sum_probs=56.6
Q ss_pred eEEEEeCCCCEEEEeHHHHHHhHHHHHHhhCCC-C----CCcccCCCCCHHHHHHHHHHhhhcCCCCC
Q 043302 6 KITLKSLDGKAFKVDEVVALESQTIEHMIGDDC-V----KNKIPLPNVTSKILSKVINLLTVSSTSKP 68 (71)
Q Consensus 6 ~i~L~SsDg~~f~v~~~~a~~S~~i~~ml~~~~-~----~~~Ipl~~V~~~~L~kViewc~~h~~d~p 68 (71)
.|+|+|+||++|.|++.+|.+|++|++|+++.+ . .++||||+|++.+|+|||+||+||++++|
T Consensus 2 ~v~L~ssDg~~f~v~~~vA~~S~~i~~m~~~~~~~~e~~~~~Ipl~~V~~~iL~kViey~~~h~~~~~ 69 (159)
T 2ast_A 2 SIKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPP 69 (159)
T ss_dssp EEEEECTTSCEEEEEHHHHHTCHHHHHHTTSSCSS------CEECTTSCHHHHHHHHHHHHHTTTCCC
T ss_pred eEEEEcCCCCEEEeCHHHHHHhHHHHHHHHhcCCcccccCCCcCCCCccHHHHHHHHHHHHHcCcCCC
Confidence 499999999999999999999999999999843 3 27999999999999999999999998764
No 9
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=97.52 E-value=0.00083 Score=38.18 Aligned_cols=60 Identities=13% Similarity=0.189 Sum_probs=48.4
Q ss_pred eEEEEeCCC---CEEEEeHHHH-HHhHHHHHHhhCCCC--CCcccCCCCCHHHHHHHHHHhhhcCC
Q 043302 6 KITLKSLDG---KAFKVDEVVA-LESQTIEHMIGDDCV--KNKIPLPNVTSKILSKVINLLTVSST 65 (71)
Q Consensus 6 ~i~L~SsDg---~~f~v~~~~a-~~S~~i~~ml~~~~~--~~~Ipl~~V~~~~L~kViewc~~h~~ 65 (71)
-++|+..+| +.|.+-+.+. ..|..++.|+.+... ...|.|+++++.+++.+++|+..-.-
T Consensus 10 Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~~~i~l~~~~~~~f~~~l~~iYt~~~ 75 (109)
T 2vkp_A 10 DVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVKSEIHIPDVEPAAFLILLKYMYSDEI 75 (109)
T ss_dssp CEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------CCEEEETTSCHHHHHHHHHHHHHCCC
T ss_pred cEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCCCeEEeCCCCHHHHHHHHHHHcCCCc
Confidence 578888876 9999999995 589999999986421 27899999999999999999987544
No 10
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=97.39 E-value=0.00082 Score=39.63 Aligned_cols=56 Identities=16% Similarity=0.352 Sum_probs=46.9
Q ss_pred eEEEEeCCCCEEEEeHHHH-HHhHHHHHHhhCCCCCCcccCC-CCCHHHHHHHHHHhhhc
Q 043302 6 KITLKSLDGKAFKVDEVVA-LESQTIEHMIGDDCVKNKIPLP-NVTSKILSKVINLLTVS 63 (71)
Q Consensus 6 ~i~L~SsDg~~f~v~~~~a-~~S~~i~~ml~~~~~~~~Ipl~-~V~~~~L~kViewc~~h 63 (71)
-++|+. +|+.|.+-+.+. ..|..++.|+... ....|.|| +++..+++.+++|+.-.
T Consensus 35 Dv~l~v-~~~~~~~Hk~vLaa~S~~F~~~f~~~-~~~~i~l~~~~~~~~f~~ll~~iYtg 92 (129)
T 3ga1_A 35 DVSVVV-KGHAFKAHRAVLAASSSYFRDLFNNS-RSAVVELPAAVQPQSFQQILSFCYTG 92 (129)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHBHHHHHHHHHC-CCSEEECCTTCCHHHHHHHHHHHHHS
T ss_pred ceEEEE-CCEEEEehHHHHHHcCHHHHHHHcCC-CCCEEEECCCCCHHHHHHHHHHHhCC
Confidence 356665 799999999874 5799999999876 56789998 99999999999998754
No 11
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=97.37 E-value=0.0011 Score=38.56 Aligned_cols=58 Identities=22% Similarity=0.319 Sum_probs=47.8
Q ss_pred eEEEEeCCCCEEEEeHHH-HHHhHHHHHHhhCCCCCCcccCCCCCHHHHHHHHHHhhhcCC
Q 043302 6 KITLKSLDGKAFKVDEVV-ALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVINLLTVSST 65 (71)
Q Consensus 6 ~i~L~SsDg~~f~v~~~~-a~~S~~i~~ml~~~~~~~~Ipl~~V~~~~L~kViewc~~h~~ 65 (71)
-++|+. +|+.|.+-+.+ |..|..++.|+.... ...|.|+++++.+++.+++|+.--+-
T Consensus 26 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~~~-~~~i~l~~~~~~~f~~ll~~iYtg~~ 84 (119)
T 3b84_A 26 DATLDV-GGLVFKAHWSVLACCSHFFQSLYGDGS-GGSVVLPAGFAEIFGLLLDFFYTGHL 84 (119)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHHTTTT-CCCEEECGGGHHHHHHHHHHHHHSCC
T ss_pred ceEEEE-CCEEEEeeHHHHhhcCHHHHHHHCCCC-CCeEEeCCCCHHHHHHHHHHHcCCCC
Confidence 356664 68999999997 557999999998653 67899999999999999999986544
No 12
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=97.34 E-value=0.00071 Score=40.38 Aligned_cols=58 Identities=22% Similarity=0.319 Sum_probs=46.1
Q ss_pred eEEEEeCCCCEEEEeHHH-HHHhHHHHHHhhCCCCCCcccCCCCCHHHHHHHHHHhhhcCC
Q 043302 6 KITLKSLDGKAFKVDEVV-ALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVINLLTVSST 65 (71)
Q Consensus 6 ~i~L~SsDg~~f~v~~~~-a~~S~~i~~ml~~~~~~~~Ipl~~V~~~~L~kViewc~~h~~ 65 (71)
-++|+. +|+.|.+-+.+ |..|..++.|+.... ...|.|++++..+++.+++|+...+-
T Consensus 27 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~mf~~~~-~~~i~l~~~~~~~f~~lL~fiYtg~~ 85 (135)
T 2yy9_A 27 DATLDV-GGLVFKAHWSVLACCSHFFQRIYGDGT-GGSVVLPAGFAEIFGLLLDFFYTGHL 85 (135)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHTCC-----CCEEECGGGHHHHHHHHHHHHHSCC
T ss_pred ceEEEE-CCEEEehHHHHHHHhCHHHHHHHcCCC-CCeEEeCCCCHHHHHHHHHHHhCCCC
Confidence 366665 68999999997 667999999997643 57799999999999999999987554
No 13
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=97.31 E-value=0.0031 Score=36.31 Aligned_cols=58 Identities=17% Similarity=0.183 Sum_probs=46.4
Q ss_pred eEEEEeCCCCEEEEeHHH-HHHhHHHHHHhhCCCCCCcccCC--CCCHHHHHHHHHHhhhcCC
Q 043302 6 KITLKSLDGKAFKVDEVV-ALESQTIEHMIGDDCVKNKIPLP--NVTSKILSKVINLLTVSST 65 (71)
Q Consensus 6 ~i~L~SsDg~~f~v~~~~-a~~S~~i~~ml~~~~~~~~Ipl~--~V~~~~L~kViewc~~h~~ 65 (71)
-++|+. +|+.|.+-+.+ +..|..++.|+... ....|.|+ ++++.+++.+++|+..-+-
T Consensus 24 Dv~l~v-~~~~~~aHk~vLaa~S~yF~~~f~~~-~~~~i~l~~~~~~~~~f~~ll~~~Yt~~~ 84 (116)
T 2vpk_A 24 DCTIVI-GEFQFKAHRNVLASFSEYFGAIYRST-SENNVFLDQSQVKADGFQKLLEFIYTGTL 84 (116)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHHTTC-CCSCEECCTTTCCHHHHHHHHHHHHHSCC
T ss_pred cEEEEE-CCEEEeccHHHHhhcCHHHHHHHcCC-CCCeEEeecCCCCHHHHHHHHHHHcCCCc
Confidence 356665 58999999998 47899999999876 34556666 9999999999999986544
No 14
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=97.27 E-value=0.0016 Score=37.71 Aligned_cols=59 Identities=14% Similarity=0.268 Sum_probs=47.1
Q ss_pred eEEEEeCCCCEEEEeHHHH-HHhHHHHHHhhCCC---CCCcccCCCCCHHHHHHHHHHhhhcCC
Q 043302 6 KITLKSLDGKAFKVDEVVA-LESQTIEHMIGDDC---VKNKIPLPNVTSKILSKVINLLTVSST 65 (71)
Q Consensus 6 ~i~L~SsDg~~f~v~~~~a-~~S~~i~~ml~~~~---~~~~Ipl~~V~~~~L~kViewc~~h~~ 65 (71)
-++|+. +|+.|.+-+.+. ..|..++.|+.+.. ....|.|++++..+++.+++|+..-.-
T Consensus 27 Dv~l~v-~~~~~~aHk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~ll~~~Yt~~~ 89 (120)
T 2if5_A 27 DVVILV-EGREFPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFAYTATL 89 (120)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHHHC-----CCSEEECCSSCHHHHHHHHHHHHHSCC
T ss_pred CeEEEE-CCEEEeHHHHHHHHhCHHHHHHhcCCccccCCceEEeCCCCHHHHHHHHHHHcCCCC
Confidence 466665 689999999985 56999999998652 347899999999999999999986543
No 15
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=97.25 E-value=0.0014 Score=38.16 Aligned_cols=56 Identities=13% Similarity=0.306 Sum_probs=46.6
Q ss_pred eEEEEeCCCCEEEEeHHHH-HHhHHHHHHhhCCCCCCcccCCCCCHHHHHHHHHHhhhcC
Q 043302 6 KITLKSLDGKAFKVDEVVA-LESQTIEHMIGDDCVKNKIPLPNVTSKILSKVINLLTVSS 64 (71)
Q Consensus 6 ~i~L~SsDg~~f~v~~~~a-~~S~~i~~ml~~~~~~~~Ipl~~V~~~~L~kViewc~~h~ 64 (71)
-++|+. +|+.|.+-+.+. ..|...+.|+... ...|.|+++++.+++.+++|+.--+
T Consensus 33 Dv~l~v-~~~~f~aHk~vLaa~S~~F~~~f~~~--~~~i~l~~~~~~~f~~~l~~~Ytg~ 89 (116)
T 3fkc_A 33 DVTVIV-EDRKFRAHKNILSASSTYFHQLFSVA--GQVVELSFIRAEIFAEILNYIYSSK 89 (116)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHTTSC--CSEEEECSSCHHHHHHHHHHHTTSC
T ss_pred eEEEEE-CCEEEehhHHHHHHcCHHHHHHHcCC--CCEEEeCCCCHHHHHHHHHhhcCCC
Confidence 356664 689999998884 7799999999764 5789999999999999999987543
No 16
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=97.21 E-value=0.0023 Score=37.29 Aligned_cols=57 Identities=14% Similarity=0.289 Sum_probs=47.7
Q ss_pred eEEEEeCCCCEEEEeHHH-HHHhHHHHHHhhCCCCCCcccCCCCCHHHHHHHHHHhhhcCC
Q 043302 6 KITLKSLDGKAFKVDEVV-ALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVINLLTVSST 65 (71)
Q Consensus 6 ~i~L~SsDg~~f~v~~~~-a~~S~~i~~ml~~~~~~~~Ipl~~V~~~~L~kViewc~~h~~ 65 (71)
-++|+. +|+.|.+-+.+ +..|...+.|+... ...|.|+++++.+++.+++|+..-+-
T Consensus 30 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~~--~~~i~l~~~~~~~f~~ll~~~Ytg~~ 87 (121)
T 1buo_A 30 DVVIMV-DSQEFHAHRTVLACTSKMFEILFHRN--SQHYTLDFLSPKTFQQILEYAYTATL 87 (121)
T ss_dssp CEEEEE-SSCEEEECHHHHHHHCHHHHHHTTSC--CSEEEECSSCHHHHHHHHHHHHHSCC
T ss_pred CEEEEE-CCEEEehhHHHHhhcCHHHHHHHcCC--CcEEEeCCCCHHHHHHHHHhhcCCCc
Confidence 466665 68999999998 57899999999763 56899999999999999999986544
No 17
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=97.19 E-value=0.0026 Score=37.06 Aligned_cols=56 Identities=20% Similarity=0.265 Sum_probs=46.3
Q ss_pred eEEEEeCCCCEEEEeHHH-HHHhHHHHHHhhCCC-CCCcccCCC-CCHHHHHHHHHHhhh
Q 043302 6 KITLKSLDGKAFKVDEVV-ALESQTIEHMIGDDC-VKNKIPLPN-VTSKILSKVINLLTV 62 (71)
Q Consensus 6 ~i~L~SsDg~~f~v~~~~-a~~S~~i~~ml~~~~-~~~~Ipl~~-V~~~~L~kViewc~~ 62 (71)
-++|+. +|+.|.+-+.+ |..|...+.|+.... ....|.+++ ++..+++.+++|+..
T Consensus 34 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~~~i~l~~~~~~~~f~~~l~~iYt 92 (125)
T 3ohu_A 34 DVTLIV-ERKEFRAHRAVLAACSEYFWQALVGQTKNDLVVSLPEEVTARGFGPLLQFAYT 92 (125)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHBHHHHHHHTTCCCSSCEEECCTTCCHHHHHHHHHHHTT
T ss_pred ceEEEE-CCEEEechHHHHHHcCHHHHHHhcCCCCCCcEEEeCCCCCHHHHHHHHHhHcC
Confidence 366664 68999999988 557999999998754 356889998 999999999999874
No 18
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=97.16 E-value=0.002 Score=39.06 Aligned_cols=59 Identities=15% Similarity=0.359 Sum_probs=48.6
Q ss_pred eEEEEeCCCCEEEEeHHH-HHHhHHHHHHhhCCC---CCCcccCCCCCHHHHHHHHHHhhhcCC
Q 043302 6 KITLKSLDGKAFKVDEVV-ALESQTIEHMIGDDC---VKNKIPLPNVTSKILSKVINLLTVSST 65 (71)
Q Consensus 6 ~i~L~SsDg~~f~v~~~~-a~~S~~i~~ml~~~~---~~~~Ipl~~V~~~~L~kViewc~~h~~ 65 (71)
.++|+. +|+.|.+.+.+ +..|..++.|+.... ....|.|++++..+++.+++|+....-
T Consensus 36 Dv~l~v-~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~l~~~Yt~~~ 98 (172)
T 3htm_A 36 DCCLCV-AGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKA 98 (172)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHHHSCCCGGGTTEEEECSSCHHHHHHHHHHHHHSCC
T ss_pred ceEEEE-CCEEEEeeHHHHHHcCHHHHHHHccCccccCCCeEEecCCCHHHHHHHHHHHhCCCC
Confidence 366665 68999999998 467999999998653 247899999999999999999986544
No 19
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=97.07 E-value=0.0074 Score=35.19 Aligned_cols=59 Identities=14% Similarity=0.233 Sum_probs=48.0
Q ss_pred eEEEEeCCCCEEEEeHHHH-HHhHHHHHHhhCCCC--CCcccC-CCCCHHHHHHHHHHhhhcCC
Q 043302 6 KITLKSLDGKAFKVDEVVA-LESQTIEHMIGDDCV--KNKIPL-PNVTSKILSKVINLLTVSST 65 (71)
Q Consensus 6 ~i~L~SsDg~~f~v~~~~a-~~S~~i~~ml~~~~~--~~~Ipl-~~V~~~~L~kViewc~~h~~ 65 (71)
-++|+. +|+.|.+-+.+. ..|..++.|+..... ...|.| ++++..+++.+++|+.--.-
T Consensus 31 Dv~l~v-~~~~~~aHk~iLaa~S~~F~~~f~~~~~e~~~~i~l~~~~~~~~f~~ll~~~Ytg~~ 93 (127)
T 1r29_A 31 DVVIVV-SREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMYTSRL 93 (127)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECCTTSCHHHHHHHHHHHHHSCC
T ss_pred CEEEEE-CCEEEehHHHHHHHhCHHHHHHhcCCccCCCCEEEeCCCCCHHHHHHHHHHHcCCCc
Confidence 466665 588999999985 689999999986532 477899 89999999999999976443
No 20
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=97.02 E-value=0.0022 Score=37.86 Aligned_cols=59 Identities=14% Similarity=0.339 Sum_probs=48.5
Q ss_pred eEEEEeCCCCEEEEeHHHH-HHhHHHHHHhhCCC---CCCcccCCCCCHHHHHHHHHHhhhcCC
Q 043302 6 KITLKSLDGKAFKVDEVVA-LESQTIEHMIGDDC---VKNKIPLPNVTSKILSKVINLLTVSST 65 (71)
Q Consensus 6 ~i~L~SsDg~~f~v~~~~a-~~S~~i~~ml~~~~---~~~~Ipl~~V~~~~L~kViewc~~h~~ 65 (71)
.++|+. +|+.|.+.+.+. ..|..++.|+.... ....|.|++++..+++.+++|+...+-
T Consensus 27 Dv~l~v-~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~ 89 (145)
T 4eoz_A 27 DCCLCV-AGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKA 89 (145)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHHHSSSHHHHHTEEEECSSCHHHHHHHHHHHHHSCC
T ss_pred ceEEEE-CCEEEEeehHHHHHcCHHHHHHHcCCCcCCCCceEEecCCCHHHHHHHHHhhccCcc
Confidence 466665 688999999885 67999999998753 237899999999999999999986554
No 21
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=96.98 E-value=0.0066 Score=36.56 Aligned_cols=58 Identities=16% Similarity=0.257 Sum_probs=47.0
Q ss_pred eEEEEeCCCCEEEEeHHHH-HHhHHHHHHhhCCC-----CCCcccCCCCCHHHHHHHHHHhhhcC
Q 043302 6 KITLKSLDGKAFKVDEVVA-LESQTIEHMIGDDC-----VKNKIPLPNVTSKILSKVINLLTVSS 64 (71)
Q Consensus 6 ~i~L~SsDg~~f~v~~~~a-~~S~~i~~ml~~~~-----~~~~Ipl~~V~~~~L~kViewc~~h~ 64 (71)
-++|+. +|+.|.+-+.+. ..|..++.|+.... ....|.|++++..+++.+++|+.--.
T Consensus 49 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~mf~~~~~e~e~~~~~I~l~~v~~~~f~~lL~fiYtg~ 112 (144)
T 2ppi_A 49 DAHLVL-DGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQ 112 (144)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHHHHCC-----CCCEEECCSSCHHHHHHHHHHHTTSC
T ss_pred ceEEEE-CCEEEehHHHHHHHcCHHHHHHHcCCCccccCCCcEEEeCCCCHHHHHHHHHHHhCCC
Confidence 366665 689999999984 47999999997642 35789999999999999999997543
No 22
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=96.90 E-value=0.0071 Score=35.07 Aligned_cols=58 Identities=24% Similarity=0.290 Sum_probs=47.2
Q ss_pred eEEEEeCCCCEEEEeHHH-HHHhHHHHHHhhCCCCCCcccCCCCCHHHHHHHHHHhhhcCCC
Q 043302 6 KITLKSLDGKAFKVDEVV-ALESQTIEHMIGDDCVKNKIPLPNVTSKILSKVINLLTVSSTS 66 (71)
Q Consensus 6 ~i~L~SsDg~~f~v~~~~-a~~S~~i~~ml~~~~~~~~Ipl~~V~~~~L~kViewc~~h~~d 66 (71)
.++|+. +|+.|.+-+.+ +..|...+.|+.+ ....|.|++++..+++.+++|+.--+-+
T Consensus 29 Dv~l~v-~~~~~~aHk~vLaa~S~yF~~~f~~--~~~~i~l~~~~~~~f~~ll~~~Ytg~~~ 87 (119)
T 2q81_A 29 DCTFVV-DGVHFKAHKAVLAACSEYFKMLFVD--QKDVVHLDISNAAGLGQVLEFMYTAKLS 87 (119)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHHHH--CCSGGGGGGCCHHHHHHHHHHHHHSCCC
T ss_pred ceEEEE-CCEEEehhHHHHHHcCHHHHHHHcC--CCCEEEeCCCCHHHHHHHHHHHcCCCCc
Confidence 466664 68999999998 4579999999986 3567889999999999999999865443
No 23
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=96.48 E-value=0.015 Score=33.84 Aligned_cols=57 Identities=25% Similarity=0.307 Sum_probs=44.9
Q ss_pred eEEEEeCCCCEEEEeHHH-HHHhHHHHHHhhCCC-CCCcccCC-CCCHHHHHHHHHHhhhc
Q 043302 6 KITLKSLDGKAFKVDEVV-ALESQTIEHMIGDDC-VKNKIPLP-NVTSKILSKVINLLTVS 63 (71)
Q Consensus 6 ~i~L~SsDg~~f~v~~~~-a~~S~~i~~ml~~~~-~~~~Ipl~-~V~~~~L~kViewc~~h 63 (71)
-++|+. +|+.|.+-+.+ |..|...+.|+.+.. ....|.++ +|+...++.+++|+..-
T Consensus 31 Dv~l~v-~~~~~~aHk~vLaa~S~yF~~mf~~~~~e~~~i~l~~~v~~~~f~~lL~~iYtg 90 (124)
T 2ihc_A 31 DVTIFV-EGQRFRAHRSVLAACSSYFHSRIVGQADGELNITLPEEVTVKGFEPLIQFAYTA 90 (124)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHBHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHS
T ss_pred CEEEEE-CCEEEecHHHHHHHcCHHHHHHHcCCCCCCceEeecCCcCHHHHHHHHHHhcCC
Confidence 356655 58999999988 457999999998653 23578885 89999999999998753
No 24
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=96.44 E-value=0.033 Score=32.96 Aligned_cols=59 Identities=20% Similarity=0.258 Sum_probs=47.2
Q ss_pred eEEEEeCCCCEEEEeHHHH-HHhHHHHHHhhCCCC-CCcccCC-CCCHHHHHHHHHHhhhcCC
Q 043302 6 KITLKSLDGKAFKVDEVVA-LESQTIEHMIGDDCV-KNKIPLP-NVTSKILSKVINLLTVSST 65 (71)
Q Consensus 6 ~i~L~SsDg~~f~v~~~~a-~~S~~i~~ml~~~~~-~~~Ipl~-~V~~~~L~kViewc~~h~~ 65 (71)
-++|+. +|+.|.+-+.+. ..|..++.|+..... ...|.|+ +|+...++.+++|+.--+-
T Consensus 38 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~~~i~l~~~v~~~~~~~lL~~~Ytg~~ 99 (138)
T 2z8h_A 38 DVTVLV-EGQRFRAHRSVLAACSSYFHSRIVGQTDAELTVTLPEEVTVKGFEPLIQFAYTAKL 99 (138)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHHTTCCCTTEEEECCTTSCHHHHHHHHHHHHHSCC
T ss_pred CeEEEE-CCEEEechHHHHHHcCHHHHHHHhcCCCCCceEEeCCCCCHHHHHHHHHHhcCCCc
Confidence 356665 589999999885 679999999987543 3678886 8999999999999986543
No 25
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=96.33 E-value=0.014 Score=38.68 Aligned_cols=58 Identities=16% Similarity=0.362 Sum_probs=46.7
Q ss_pred eEEEEeCCCCEEEEeHHH-HHHhHHHHHHhhCCC---CCCcccCCCCCHHHHHHHHHHhhhcC
Q 043302 6 KITLKSLDGKAFKVDEVV-ALESQTIEHMIGDDC---VKNKIPLPNVTSKILSKVINLLTVSS 64 (71)
Q Consensus 6 ~i~L~SsDg~~f~v~~~~-a~~S~~i~~ml~~~~---~~~~Ipl~~V~~~~L~kViewc~~h~ 64 (71)
.++|+. +|+.|.+.+.+ |.+|...+.|+.... ....|.|+++++.+++.+++|+....
T Consensus 176 Dv~l~v-~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~ 237 (312)
T 3hqi_A 176 DCCLCV-AGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGK 237 (312)
T ss_dssp CEEEEE-TTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEECSSCHHHHHHHHHHHHHSC
T ss_pred ceEEEE-CCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEecCCCHHHHHHHHHhhcCCC
Confidence 456665 78999999988 577999999997642 34789999999999999999997643
No 26
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=96.22 E-value=0.017 Score=37.37 Aligned_cols=59 Identities=15% Similarity=0.250 Sum_probs=45.0
Q ss_pred eEEEEeCCCCEEEEeHHHHH-HhHHHHHHhhCCC-----CCCcccCCCCCHHHHHHHHHHhhhcCC
Q 043302 6 KITLKSLDGKAFKVDEVVAL-ESQTIEHMIGDDC-----VKNKIPLPNVTSKILSKVINLLTVSST 65 (71)
Q Consensus 6 ~i~L~SsDg~~f~v~~~~a~-~S~~i~~ml~~~~-----~~~~Ipl~~V~~~~L~kViewc~~h~~ 65 (71)
-++|+. +|+.|.+-+.+.. .|...+.|+.... ....|+|+++++.+++.+++|+..-+-
T Consensus 33 Dv~l~v-~~~~f~~Hr~vLaa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~~~~f~~ll~~~Yt~~~ 97 (256)
T 3hve_A 33 DAHLVL-DGEEIPVQKNILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQI 97 (256)
T ss_dssp CEEEEE-TTEEEEECHHHHHTTCHHHHHTC-----------CEEECSSCCHHHHHHHHHHHHHSCC
T ss_pred ceEEEE-CCEEEechHHHHHHcCHHHHHHhCCCCCcccCCCCeEEeCCCCHHHHHHHHhhccCCCC
Confidence 466665 6899999999865 5999999997542 246899999999999999999986543
No 27
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=95.95 E-value=0.0076 Score=39.51 Aligned_cols=58 Identities=14% Similarity=0.255 Sum_probs=43.3
Q ss_pred eEEEEeC--CCCEEEEeHHHHH-HhHHHHHHhhCCC---CCCcccCC------CCCHHHHHHHHHHhhhc
Q 043302 6 KITLKSL--DGKAFKVDEVVAL-ESQTIEHMIGDDC---VKNKIPLP------NVTSKILSKVINLLTVS 63 (71)
Q Consensus 6 ~i~L~Ss--Dg~~f~v~~~~a~-~S~~i~~ml~~~~---~~~~Ipl~------~V~~~~L~kViewc~~h 63 (71)
-++|+.. ||+.|.+-+.+.. .|...+.|+.+.. ....|.|+ +|++.+++.+++|+...
T Consensus 34 Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Ytg 103 (279)
T 3i3n_A 34 DITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTG 103 (279)
T ss_dssp CEEEECC----CEEEECHHHHHHHCTTSGGGCCC--------EEECCCCSSTTCSCHHHHHHHHHHHHHS
T ss_pred CeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCccccCCeEEeccccccCCCCHHHHHHHHHhhCcC
Confidence 3677765 7999999999855 6999999987642 24678888 89999999999998753
No 28
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=93.96 E-value=0.034 Score=32.49 Aligned_cols=50 Identities=10% Similarity=0.147 Sum_probs=38.2
Q ss_pred eEEEEeCCCCEEEEeHHHHHH-hHHHHHHhhCCCCCCcccCCCCCHHHHHHHHHHhhh
Q 043302 6 KITLKSLDGKAFKVDEVVALE-SQTIEHMIGDDCVKNKIPLPNVTSKILSKVINLLTV 62 (71)
Q Consensus 6 ~i~L~SsDg~~f~v~~~~a~~-S~~i~~ml~~~~~~~~Ipl~~V~~~~L~kViewc~~ 62 (71)
-++|+. +|+.|.+-+.+... |...+. ....|.|++|++.+++.+++|+.-
T Consensus 32 Dv~l~v-~~~~f~aHk~vLaa~S~yF~~------~~~~i~l~~v~~~~f~~ll~fiYt 82 (119)
T 3m5b_A 32 DTLITV-GSQEFPAHSLVLAGVSQQLGR------RGQWALGEGISPSTFAQLLNFVYG 82 (119)
T ss_dssp CEEEEE-TTEEEEECHHHHHTTCGGGCC------CEEEECCSSCCHHHHHHHHHHHTT
T ss_pred ceEEEE-CCEEEeeEHHHHHHcCHHHhc------CCCEEEeCCCCHHHHHHHHHHHcC
Confidence 356665 69999999988543 655442 246789999999999999999874
No 29
>3v5w_G G gamma-I, guanine nucleotide-binding protein G(I)/G(S)/G(O) gamma-2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Bos taurus} PDB: 1xhm_B 3pvu_G* 3cik_G 3krw_G* 3krx_G* 3psc_G 1omw_G* 3pvw_G* 3uzs_G 1gp2_G* 1gg2_G* 2bcj_G* 3ah8_G* 2qns_B 3kj5_B 3sn6_G*
Probab=72.44 E-value=2.5 Score=23.49 Aligned_cols=21 Identities=14% Similarity=0.281 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhhhcCCCCCCC
Q 043302 50 SKILSKVINLLTVSSTSKPFA 70 (71)
Q Consensus 50 ~~~L~kViewc~~h~~d~p~~ 70 (71)
|..-+-+++||+.|..++|+.
T Consensus 37 SqaaadL~~yc~~~~~~DpLl 57 (77)
T 3v5w_G 37 SKAAADLMAYCEAHAKEDPLL 57 (77)
T ss_dssp HHHHHHHHHHHHHSGGGCTTT
T ss_pred HHHHHHHHHHHHhcCCCCCCc
Confidence 677788999999999988864
No 30
>1got_G GT-gamma; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: a.137.3.1 PDB: 1tbg_E 2trc_G 1b9y_B 1b9x_B 1a0r_G*
Probab=69.24 E-value=1.2 Score=24.47 Aligned_cols=20 Identities=20% Similarity=0.253 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhhhcCCCCCC
Q 043302 50 SKILSKVINLLTVSSTSKPF 69 (71)
Q Consensus 50 ~~~L~kViewc~~h~~d~p~ 69 (71)
|...+-+++||+.|...+|+
T Consensus 41 S~aa~~L~~Yce~~~~~DpL 60 (73)
T 1got_G 41 SKCCEEFRDYVEERSGEDPL 60 (73)
T ss_dssp HHHHHHHHHHHHHHGGGCHH
T ss_pred HHHHHHHHHHHHhcCCCCCC
Confidence 67788899999998665543
No 31
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=67.63 E-value=2 Score=22.57 Aligned_cols=22 Identities=14% Similarity=0.193 Sum_probs=16.5
Q ss_pred CCCCceEEEEeCCCCEEEEeHH
Q 043302 1 MSTHKKITLKSLDGKAFKVDEV 22 (71)
Q Consensus 1 ms~~~~i~L~SsDg~~f~v~~~ 22 (71)
|++...|.+++.+|..|.++-.
T Consensus 1 ~~~~m~i~Vk~~~g~~~~~~v~ 22 (79)
T 3phx_B 1 MDEPLSILVRNNKGRSSTYEVR 22 (79)
T ss_dssp --CCEEEEEECTTSCEEEEEEC
T ss_pred CCCCEEEEEEeCCCCEEEEEEC
Confidence 6677789999999999887544
No 32
>2xuv_A HDEB, 10K-L protein; unknown function; HET: MLY; 1.50A {Escherichia coli}
Probab=63.82 E-value=2.8 Score=23.26 Aligned_cols=26 Identities=12% Similarity=0.174 Sum_probs=20.5
Q ss_pred CcccCCCCCHHHHHHHHHHhhhcCCC
Q 043302 41 NKIPLPNVTSKILSKVINLLTVSSTS 66 (71)
Q Consensus 41 ~~Ipl~~V~~~~L~kViewc~~h~~d 66 (71)
+.+.+.++.-....+|++||..|-..
T Consensus 39 D~vd~~~~e~~~~Pkvie~Ckk~P~~ 64 (79)
T 2xuv_A 39 DTVTLNETDLTQIPXVIEYCXXNPQX 64 (79)
T ss_dssp SBCCCCHHHHHHHHHHHHHHHHCTTS
T ss_pred CccchhhhhhhcccHHHHHHhcCCcc
Confidence 46777777666789999999998654
No 33
>1xb4_A VPS25, hypothetical 23.6 kDa protein in YUH1-URA8 intergenic region; winged helix, unknown function; 3.10A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_B 1u5t_C
Probab=60.54 E-value=3.6 Score=26.59 Aligned_cols=12 Identities=0% Similarity=-0.036 Sum_probs=9.8
Q ss_pred HHHHHHhhhcCC
Q 043302 54 SKVINLLTVSST 65 (71)
Q Consensus 54 ~kViewc~~h~~ 65 (71)
+.|+.||.||+-
T Consensus 32 ~LIL~ycr~~ki 43 (202)
T 1xb4_A 32 DIISQYCKTKKI 43 (202)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHhCe
Confidence 349999999974
No 34
>3r2c_J Protein NUSE, 30S ribosomal protein S10; cross species NUSB-NUSE-RNA interaction; HET: PEG; 1.90A {Aquifex aeolicus} PDB: 3r2d_J
Probab=57.55 E-value=10 Score=21.02 Aligned_cols=40 Identities=30% Similarity=0.492 Sum_probs=18.8
Q ss_pred CCCCc-eEEEEeCCCCEEEEeHHHHHHhHHHHHHhhCCCC--CCcccCC
Q 043302 1 MSTHK-KITLKSLDGKAFKVDEVVALESQTIEHMIGDDCV--KNKIPLP 46 (71)
Q Consensus 1 ms~~~-~i~L~SsDg~~f~v~~~~a~~S~~i~~ml~~~~~--~~~Ipl~ 46 (71)
|+..+ .++|.|-|-.. ++.. +.-|.+.....|. .+|||||
T Consensus 1 ~~~~kiRI~L~S~d~~~--Ld~~----~~~Iv~~ak~~g~~v~GPipLP 43 (83)
T 3r2c_J 1 MEQEKIRIKLRAYDHRL--LDQS----VKQIIETVKRTGGVVKGPIPLP 43 (83)
T ss_dssp --CCCEEEEEEESCHHH--HHHH----HHHHHHHHHHTTCEEEEEEEEE
T ss_pred CCCcEEEEEEEECCHHH--HHHH----HHHHHHHHHHhCCeeeCCcCCC
Confidence 55443 68888887221 1222 2223233333332 5899987
No 35
>2ra2_A Putative lipoprotein; X-RAY, NESG, STR88A, Q7CPV8, structural genomics, PSI-2, protein structure initiative; 1.90A {Salmonella typhimurium LT2} SCOP: b.38.1.6
Probab=55.42 E-value=9.4 Score=20.38 Aligned_cols=18 Identities=22% Similarity=0.385 Sum_probs=11.5
Q ss_pred CCCCceEEEEeCCCCEEEE
Q 043302 1 MSTHKKITLKSLDGKAFKV 19 (71)
Q Consensus 1 ms~~~~i~L~SsDg~~f~v 19 (71)
|||+ .+.+.+.||+.+..
T Consensus 1 ~sSS-~yVitt~DG~~IvT 18 (64)
T 2ra2_A 1 MSGP-NYVMHTNDGRSIVT 18 (64)
T ss_dssp ---C-CEEEEETTSCEEEC
T ss_pred CCCC-CEEEEeCCCcEEEc
Confidence 6654 47788899998854
No 36
>3cuq_C Vacuolar protein-sorting-associated protein 25; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_C
Probab=55.14 E-value=4.6 Score=25.51 Aligned_cols=12 Identities=17% Similarity=0.257 Sum_probs=9.8
Q ss_pred HHHHHHhhhcCC
Q 043302 54 SKVINLLTVSST 65 (71)
Q Consensus 54 ~kViewc~~h~~ 65 (71)
+.|+.||.||+-
T Consensus 35 ~LIl~ycr~~k~ 46 (176)
T 3cuq_C 35 SLVLSFCRLHKQ 46 (176)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHhCe
Confidence 349999999974
No 37
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=50.66 E-value=14 Score=19.69 Aligned_cols=21 Identities=14% Similarity=0.234 Sum_probs=16.1
Q ss_pred CCCCceEEEEeCCCCEEEEeH
Q 043302 1 MSTHKKITLKSLDGKAFKVDE 21 (71)
Q Consensus 1 ms~~~~i~L~SsDg~~f~v~~ 21 (71)
|+....|.+++.+|..|.++.
T Consensus 1 m~~~m~I~Vk~~~g~~~~~~v 21 (88)
T 2hj8_A 1 MDEPLSILVRNNKGRSSTYEV 21 (88)
T ss_dssp -CCEEEEEEEETTSCEEEEEE
T ss_pred CCccEEEEEECCCCCEEEEEE
Confidence 666778999999999887643
No 38
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=47.00 E-value=8.8 Score=20.70 Aligned_cols=19 Identities=26% Similarity=0.384 Sum_probs=14.4
Q ss_pred CCCCceEEEEeCCCCEEEEe
Q 043302 1 MSTHKKITLKSLDGKAFKVD 20 (71)
Q Consensus 1 ms~~~~i~L~SsDg~~f~v~ 20 (71)
|+....++++|.|| .+.|+
T Consensus 1 ~~~~m~lRvrs~~G-~~Ri~ 19 (80)
T 2pjh_A 1 MAESIIIRVQSPDG-VKRIT 19 (80)
T ss_dssp -CCCCCCEEECSSE-EEECC
T ss_pred CCCcEEEEEECCCC-CEEEE
Confidence 67667899999999 56665
No 39
>1dj8_A HDEA, protein HNS-dependent expression A; alpha helical, structural protein; 2.00A {Escherichia coli} SCOP: a.57.1.1 PDB: 1bg8_A
Probab=45.69 E-value=13 Score=20.98 Aligned_cols=16 Identities=6% Similarity=0.185 Sum_probs=12.6
Q ss_pred HHHHHHHHHhhhcCCC
Q 043302 51 KILSKVINLLTVSSTS 66 (71)
Q Consensus 51 ~~L~kViewc~~h~~d 66 (71)
.+-.+|++||..|-..
T Consensus 57 ~v~P~vve~Ckk~P~~ 72 (89)
T 1dj8_A 57 TVTPAIVQACTQDKQA 72 (89)
T ss_dssp HHHHHHHHHHHTTTTS
T ss_pred HhhHHHHHHHHhCchh
Confidence 4478999999988653
No 40
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=42.41 E-value=22 Score=19.61 Aligned_cols=20 Identities=15% Similarity=0.410 Sum_probs=12.7
Q ss_pred CCCCc-eEEEEeCCCCEEEEe
Q 043302 1 MSTHK-KITLKSLDGKAFKVD 20 (71)
Q Consensus 1 ms~~~-~i~L~SsDg~~f~v~ 20 (71)
|++.. .|++++.||..+.+.
T Consensus 1 ~~~~~i~ikVk~~~g~~v~~~ 21 (91)
T 2io0_B 1 MANDHINLKVAGQDGSVVQFK 21 (91)
T ss_dssp ---CEEEEEEECTTSCEEEEE
T ss_pred CCCCeEEEEEECCCCCEEEEE
Confidence 55433 788999999876654
No 41
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex, restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE; 1.50A {Helicobacter pylori} PDB: 3fc3_A*
Probab=39.35 E-value=19 Score=23.30 Aligned_cols=17 Identities=35% Similarity=0.366 Sum_probs=14.9
Q ss_pred CCHHHHHHHHHHhhhcC
Q 043302 48 VTSKILSKVINLLTVSS 64 (71)
Q Consensus 48 V~~~~L~kViewc~~h~ 64 (71)
=+...|+++++|++.|.
T Consensus 183 Dnp~~L~rai~YLe~H~ 199 (200)
T 3gox_A 183 DNPKFLEKVIEYLKKYE 199 (200)
T ss_dssp TCHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHhcc
Confidence 36799999999999996
No 42
>3d3c_J 30S ribosomal protein S10, N utilization substance protein B; NUSB, NUSE, phage lambda, lambda N antitermination antitermination; 2.60A {Escherichia coli} PDB: 2kvq_E 3d3b_J* 3imq_J
Probab=38.87 E-value=31 Score=19.08 Aligned_cols=35 Identities=29% Similarity=0.513 Sum_probs=17.2
Q ss_pred eEEEEeCCCCEEEEeHHHHHHhHHHHHHhhCCCC--CCcccCC
Q 043302 6 KITLKSLDGKAFKVDEVVALESQTIEHMIGDDCV--KNKIPLP 46 (71)
Q Consensus 6 ~i~L~SsDg~~f~v~~~~a~~S~~i~~ml~~~~~--~~~Ipl~ 46 (71)
.|+|.|-|-... +.. +.-|.+.....|. .+|||||
T Consensus 12 rI~L~S~d~~~L--d~~----~~~Iv~~ak~~g~~v~GPipLP 48 (87)
T 3d3c_J 12 RIRLKAFDHRLI--DQA----TAEIVETAKRTGAQVRGPIPLP 48 (87)
T ss_dssp EEEEEESCHHHH--HHH----HHHHHHHHHHTTCEEEEEEEEE
T ss_pred EEEEEECCHHHH--HHH----HHHHHHHHHHhCCccCCCCCCC
Confidence 578888772211 122 2223333333332 4888887
No 43
>1igq_A Transcriptional repressor protein KORB; SH3 domain, dimerization domain; 1.70A {Escherichia coli} SCOP: b.34.1.3 PDB: 1igu_A
Probab=36.03 E-value=50 Score=17.43 Aligned_cols=20 Identities=25% Similarity=0.278 Sum_probs=15.1
Q ss_pred CCceEEEEeCC-CCEEEEeHH
Q 043302 3 THKKITLKSLD-GKAFKVDEV 22 (71)
Q Consensus 3 ~~~~i~L~SsD-g~~f~v~~~ 22 (71)
+.-.+.|+=.| |++|+++..
T Consensus 32 ~~G~~wiKyED~G~e~E~d~~ 52 (62)
T 1igq_A 32 AEGYAWLKYEDDGQEFEANLA 52 (62)
T ss_dssp STTEEEEEETTTCCEEEEEGG
T ss_pred cCceEEEEEecCCcEEEEecc
Confidence 34577888877 999999754
No 44
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=31.24 E-value=50 Score=19.22 Aligned_cols=65 Identities=12% Similarity=0.187 Sum_probs=39.7
Q ss_pred CceEEEEeCCCCEEEEeHHHHHHhHHHHHHhhCCC---CC------CcccCC-C---CCHHHHHHHHHHhhhcCCCCCC
Q 043302 4 HKKITLKSLDGKAFKVDEVVALESQTIEHMIGDDC---VK------NKIPLP-N---VTSKILSKVINLLTVSSTSKPF 69 (71)
Q Consensus 4 ~~~i~L~SsDg~~f~v~~~~a~~S~~i~~ml~~~~---~~------~~Ipl~-~---V~~~~L~kViewc~~h~~d~p~ 69 (71)
++.++|.|.||....|...--. ..-+..+++-.| .+ ..+++. + ++-....++++....++.=.||
T Consensus 38 g~~~~l~s~Dg~~Vtv~l~~p~-~~~l~~~vEViG~V~~~~tI~~~~~~~fg~~~~~fD~~~yn~lv~l~~~~~~lf~~ 115 (121)
T 3kdf_A 38 GKMFILSDGEGKNGTIELMEPL-DEEISGIVEVVGRVTAKATILCTSYVQFKEDSHPFDLGLYNEAVKIIHDFPQFYPL 115 (121)
T ss_dssp SSEEEEECTTSCEEEEECSSCC-SSCCCSEEEEEEEECTTSCEEEEEEEECCCSSSCCCHHHHHHHHHHHHHCGGGSCC
T ss_pred CCEEEEEeCCCCEEEEEeCCCC-CcccCcEEEEEEEECCCCeEEEEEEEecCCCCcccCHHHHHHHHHHHhcCCccccc
Confidence 5689999999999998643200 000111322212 11 234444 4 8999999999999887655554
No 45
>2rb6_A Uncharacterized protein; NESG, Q8EI81_sheon, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.50A {Shewanella oneidensis} SCOP: b.38.1.6
Probab=30.77 E-value=56 Score=17.11 Aligned_cols=17 Identities=29% Similarity=0.479 Sum_probs=11.7
Q ss_pred CCCCceEEEEeCCCCEEEE
Q 043302 1 MSTHKKITLKSLDGKAFKV 19 (71)
Q Consensus 1 ms~~~~i~L~SsDg~~f~v 19 (71)
||| .+.+.+.||+.+..
T Consensus 1 ~SS--~yvitT~DG~~IvT 17 (61)
T 2rb6_A 1 MSS--QYIMSTKDGKMITS 17 (61)
T ss_dssp -CC--EEEEEETTSCEEEE
T ss_pred CCC--cEEEEeCCCcEEEc
Confidence 554 47788888888854
No 46
>1ng7_A Poliovirus 3A-N, genome polyprotein [core protein P3A]; helical hairpin, unfolded domain, symmetric dimer, viral protein; NMR {Human poliovirus 1} SCOP: a.178.1.1
Probab=30.19 E-value=22 Score=18.71 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=14.2
Q ss_pred cCCCCCHHHH-----HHHHHHhhhcCC
Q 043302 44 PLPNVTSKIL-----SKVINLLTVSST 65 (71)
Q Consensus 44 pl~~V~~~~L-----~kViewc~~h~~ 65 (71)
|.|.-=.+.| +.|++||+...-
T Consensus 17 ppP~aI~DLLksvds~eV~~YC~~kGw 43 (60)
T 1ng7_A 17 PPPECINDLLQAVDSQEVRDYCEKKGW 43 (60)
T ss_dssp CSSTTTHHHHHHHCCHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHCCc
Confidence 4444445555 568999997654
No 47
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=29.15 E-value=43 Score=17.86 Aligned_cols=22 Identities=14% Similarity=0.179 Sum_probs=17.6
Q ss_pred ccCCCCCHHHHHHHHHHhhhcC
Q 043302 43 IPLPNVTSKILSKVINLLTVSS 64 (71)
Q Consensus 43 Ipl~~V~~~~L~kViewc~~h~ 64 (71)
|-=.++++.+.+++..||+.++
T Consensus 32 iiA~D~~~~~~~~i~~lc~~~~ 53 (82)
T 3v7e_A 32 VVAKDADPILTSSVVSLAEDQG 53 (82)
T ss_dssp EEETTSCHHHHHHHHHHHHHHT
T ss_pred EEeCCCCHHHHHHHHHHHHHcC
Confidence 3334788899999999999875
No 48
>2k57_A Putative lipoprotein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pseudomonas syringae PV} SCOP: b.38.1.6
Probab=28.02 E-value=68 Score=16.75 Aligned_cols=17 Identities=18% Similarity=0.395 Sum_probs=11.7
Q ss_pred CCCCceEEEEeCCCCEEEE
Q 043302 1 MSTHKKITLKSLDGKAFKV 19 (71)
Q Consensus 1 ms~~~~i~L~SsDg~~f~v 19 (71)
||| .+.+.+.||+.+..
T Consensus 1 ~SS--~yvitt~DG~~IvT 17 (61)
T 2k57_A 1 MAS--PTVITLNDGREIQA 17 (61)
T ss_dssp CCC--CEEEEESSSCEEEE
T ss_pred CCC--ceEEEeCCCcEEEc
Confidence 554 36777888888754
No 49
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=27.64 E-value=57 Score=19.62 Aligned_cols=66 Identities=11% Similarity=0.147 Sum_probs=39.4
Q ss_pred CCceEEEEeCCCCEEEEeHHHHHHhHHHHHHhhCCC---C------CCcccCC-C---CCHHHHHHHHHHhhhcCCCCCC
Q 043302 3 THKKITLKSLDGKAFKVDEVVALESQTIEHMIGDDC---V------KNKIPLP-N---VTSKILSKVINLLTVSSTSKPF 69 (71)
Q Consensus 3 ~~~~i~L~SsDg~~f~v~~~~a~~S~~i~~ml~~~~---~------~~~Ipl~-~---V~~~~L~kViewc~~h~~d~p~ 69 (71)
.+..++|.|+||....|...-- .+.-+..+++-.| . ...+++. + ++-....++++.+...+.=.||
T Consensus 58 ~G~~~~l~s~Dg~~VtV~l~~p-L~~~~~~~VEViG~V~~~~tI~~~~~~~fGd~~~~fD~~~yn~lv~l~~~f~~lF~~ 136 (142)
T 2pi2_E 58 TGKMFILSDGEGKNGTIELMEP-LDEEISGIVEVVGRVTAKATILCTSYVQFKEDSHPFDLGLYNEAVKIIHDFPQFYPL 136 (142)
T ss_dssp TSSEEEEECTTSCEEEEECSSC-CSSCCCSEEEEEEEECTTSCEEEEEEEECCCSSSCCCHHHHHHHHHHHHHCGGGSCS
T ss_pred CCCEEEEEeCCCcEEEEEeCCC-CCccCCCEEEEEEEECCCCcEEEEEEEecCCCccccCHHHHHHHHHHHHhCccceEe
Confidence 3568899999999999863210 0001112333222 1 1344554 3 8999999999998865543343
No 50
>2kg4_A Growth arrest and DNA-damage-inducible protein GA alpha; GADD45, flexible regions, monomer cycle; NMR {Homo sapiens}
Probab=26.92 E-value=25 Score=21.93 Aligned_cols=20 Identities=20% Similarity=0.198 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhhhcCCCCCC
Q 043302 50 SKILSKVINLLTVSSTSKPF 69 (71)
Q Consensus 50 ~~~L~kViewc~~h~~d~p~ 69 (71)
+..|..+.+||+.++..+|.
T Consensus 137 ~~a~~~l~~~~~e~r~~~~~ 156 (165)
T 2kg4_A 137 DPALSQLICFCRESRYMDQW 156 (165)
T ss_dssp CHHHHHHHHHHHHHHTTTCS
T ss_pred chHHHHHHHHHHHhhhccCC
Confidence 37899999999999986653
No 51
>2jn0_A Hypothetical lipoprotein YGDR; solution structure, PSI-2 target, structural genomics, protein structure initiative; NMR {Escherichia coli} SCOP: b.38.1.6 PDB: 3fif_A
Probab=26.90 E-value=42 Score=17.61 Aligned_cols=17 Identities=24% Similarity=0.429 Sum_probs=9.9
Q ss_pred CCCCceEEEEeCCCCEEEE
Q 043302 1 MSTHKKITLKSLDGKAFKV 19 (71)
Q Consensus 1 ms~~~~i~L~SsDg~~f~v 19 (71)
||| .+.+.+.||+.+..
T Consensus 1 ~Ss--~yvitT~DG~~IvT 17 (61)
T 2jn0_A 1 MSS--DYVMATKDGRMILT 17 (61)
T ss_dssp -----CCEEEETTSCEEEB
T ss_pred CCC--cEEEEeCCCcEEEc
Confidence 554 36677888888754
No 52
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=26.63 E-value=27 Score=18.58 Aligned_cols=18 Identities=28% Similarity=0.456 Sum_probs=14.2
Q ss_pred ceEEEEeCCCCEEEEeHH
Q 043302 5 KKITLKSLDGKAFKVDEV 22 (71)
Q Consensus 5 ~~i~L~SsDg~~f~v~~~ 22 (71)
..|++++.+|..|.++..
T Consensus 2 m~i~vk~~~g~~~~~~v~ 19 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVE 19 (96)
T ss_dssp CEEEEEETTCCEEEEECC
T ss_pred cEEEEEeCCCCEEEEEEC
Confidence 358899999999887544
No 53
>1d8j_A General transcription factor TFIIE-beta; winged helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.18 PDB: 1d8k_A
Probab=25.05 E-value=33 Score=19.02 Aligned_cols=18 Identities=17% Similarity=0.331 Sum_probs=13.7
Q ss_pred CCCHHHHHHHHHHhh-hcC
Q 043302 47 NVTSKILSKVINLLT-VSS 64 (71)
Q Consensus 47 ~V~~~~L~kViewc~-~h~ 64 (71)
.....+|.||++|+. .|.
T Consensus 7 ~~~f~~lakiV~~mK~rh~ 25 (81)
T 1d8j_A 7 GYKFGVLAKIVNYMKTRHQ 25 (81)
T ss_dssp CTTHHHHHHHHHHHHHHHH
T ss_pred ccceehHHHHHHHHHHhhc
Confidence 456778999999998 344
No 54
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=24.32 E-value=32 Score=18.26 Aligned_cols=30 Identities=23% Similarity=0.339 Sum_probs=18.3
Q ss_pred eEEEEeCCCCEEEEeHHHHHHhHHHHHHhh
Q 043302 6 KITLKSLDGKAFKVDEVVALESQTIEHMIG 35 (71)
Q Consensus 6 ~i~L~SsDg~~f~v~~~~a~~S~~i~~ml~ 35 (71)
.|++++.+|..|.++...-..-..|+..+.
T Consensus 2 ~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~ 31 (88)
T 4fbj_B 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVE 31 (88)
T ss_dssp EEEEEETTCCEEEEECCTTCBHHHHHHHHH
T ss_pred EEEEEcCCCCEEEEEECCCCCHHHHHHHHH
Confidence 478999999999886443222233444443
No 55
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=24.26 E-value=69 Score=16.19 Aligned_cols=19 Identities=32% Similarity=0.537 Sum_probs=14.9
Q ss_pred CceEEEEeCCCCEEEEeHH
Q 043302 4 HKKITLKSLDGKAFKVDEV 22 (71)
Q Consensus 4 ~~~i~L~SsDg~~f~v~~~ 22 (71)
...|++++.+|..|.++-.
T Consensus 3 ~m~i~vk~~~g~~~~~~v~ 21 (85)
T 3mtn_B 3 HMQIFVKTLTGKTITLEVE 21 (85)
T ss_dssp CEEEEEECTTSCEEEEEEC
T ss_pred eEEEEEEcCCCCEEEEEEC
Confidence 4578999999999887544
No 56
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=23.76 E-value=72 Score=16.27 Aligned_cols=15 Identities=13% Similarity=0.392 Sum_probs=11.8
Q ss_pred eEEEEeCCCCEEEEe
Q 043302 6 KITLKSLDGKAFKVD 20 (71)
Q Consensus 6 ~i~L~SsDg~~f~v~ 20 (71)
.+++++.||..+.+.
T Consensus 3 ~lkV~~~~g~~v~~~ 17 (72)
T 1wm3_A 3 NLKVAGQDGSVVQFK 17 (72)
T ss_dssp EEEEECTTSCEEEEE
T ss_pred EEEEECCCCCEEEEE
Confidence 588999999876654
No 57
>3cg6_A Growth arrest and DNA-damage-inducible 45 gamma; alpha/beta, cell cycle; 1.70A {Mus musculus} PDB: 2wal_A
Probab=23.67 E-value=22 Score=21.83 Aligned_cols=19 Identities=16% Similarity=0.051 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhhhcCCCCC
Q 043302 50 SKILSKVINLLTVSSTSKP 68 (71)
Q Consensus 50 ~~~L~kViewc~~h~~d~p 68 (71)
+..|.++.+||+.|...+|
T Consensus 119 s~al~~l~~y~~e~~~~~~ 137 (146)
T 3cg6_A 119 DPALEKLSLFCEESRSFND 137 (146)
T ss_dssp CHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHhccccC
Confidence 6779999999999987654
No 58
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=23.40 E-value=33 Score=18.24 Aligned_cols=33 Identities=18% Similarity=0.331 Sum_probs=20.6
Q ss_pred CCceEEEEeCCCCEEEEeHHHHHHhHHHHHHhh
Q 043302 3 THKKITLKSLDGKAFKVDEVVALESQTIEHMIG 35 (71)
Q Consensus 3 ~~~~i~L~SsDg~~f~v~~~~a~~S~~i~~ml~ 35 (71)
|...|.+++..|..|.++...-..-.-++..+.
T Consensus 9 ~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~ 41 (84)
T 2kk8_A 9 SHMKFLVENLNGSSFELEVDYRDTLLVVKQKIE 41 (84)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHH
T ss_pred CceEEEEEecCCcEEEEEECCCChHHHHHHHHH
Confidence 356799999999999876433222233444443
No 59
>2waa_A Acetyl esterase, xylan esterase, putative, AXE2C; carbohydrate binding, plant cell WALL degradation, hydrolase, cellulases; 1.80A {Cellvibrio japonicus}
Probab=23.37 E-value=20 Score=23.83 Aligned_cols=15 Identities=13% Similarity=0.248 Sum_probs=8.9
Q ss_pred HHHHHHHHHhhhcCC
Q 043302 51 KILSKVINLLTVSST 65 (71)
Q Consensus 51 ~~L~kViewc~~h~~ 65 (71)
..|+++++|++||..
T Consensus 331 ~~l~~~l~~~~~~~~ 345 (347)
T 2waa_A 331 PQLRQIMDWLEHHHH 345 (347)
T ss_dssp HHHHHHHTCCC----
T ss_pred HHHHHhhhHHhhccc
Confidence 456888999999864
No 60
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=22.47 E-value=20 Score=18.51 Aligned_cols=19 Identities=26% Similarity=0.497 Sum_probs=14.5
Q ss_pred CceEEEEeCCCCEEEEeHH
Q 043302 4 HKKITLKSLDGKAFKVDEV 22 (71)
Q Consensus 4 ~~~i~L~SsDg~~f~v~~~ 22 (71)
...|++++.+|..|.++..
T Consensus 3 ~m~i~vk~~~g~~~~~~v~ 21 (85)
T 3n3k_B 3 HMRIVVKTLMGRTIILEVE 21 (85)
T ss_dssp -CEEEEECGGGCEEEEECC
T ss_pred eEEEEEEeCCCCEEEEEEC
Confidence 4578899999999887644
No 61
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=21.71 E-value=64 Score=16.43 Aligned_cols=26 Identities=15% Similarity=0.060 Sum_probs=21.0
Q ss_pred CCceEEEEeCCCCEEEEeHHHHHHhH
Q 043302 3 THKKITLKSLDGKAFKVDEVVALESQ 28 (71)
Q Consensus 3 ~~~~i~L~SsDg~~f~v~~~~a~~S~ 28 (71)
+...+...+.||....++..+....+
T Consensus 8 ~~~~i~~~d~~g~i~~~n~~~~~~~G 33 (117)
T 3f1p_A 8 SKTFLSEHSMDMKFTYCDDRITELIG 33 (117)
T ss_dssp GGEEEEEECTTCBEEEECTHHHHHHC
T ss_pred CccEEEEECCCceEEEECcChhhhhC
Confidence 45577788999999999999877654
No 62
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.58 E-value=76 Score=16.69 Aligned_cols=19 Identities=21% Similarity=0.342 Sum_probs=15.9
Q ss_pred CCCCCHHHHHHHHHHhhhc
Q 043302 45 LPNVTSKILSKVINLLTVS 63 (71)
Q Consensus 45 l~~V~~~~L~kViewc~~h 63 (71)
+|+++..+++.|++=|..+
T Consensus 29 FP~lD~~vI~~vL~a~~G~ 47 (67)
T 2dhy_A 29 FPNMDYDIIECVLRANSGA 47 (67)
T ss_dssp CSSSCHHHHHHHHHHHTSC
T ss_pred CCCCCHHHHHHHHHHcCCC
Confidence 7889999999999877644
No 63
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=21.50 E-value=41 Score=18.17 Aligned_cols=18 Identities=28% Similarity=0.456 Sum_probs=14.7
Q ss_pred ceEEEEeCCCCEEEEeHH
Q 043302 5 KKITLKSLDGKAFKVDEV 22 (71)
Q Consensus 5 ~~i~L~SsDg~~f~v~~~ 22 (71)
..|++++.+|+.|.++..
T Consensus 23 m~I~Vk~~~g~~~~l~v~ 40 (98)
T 4hcn_B 23 MQIFVKTLTGKTITLEVE 40 (98)
T ss_dssp CEEEEEETTCCEEEEECC
T ss_pred EEEEEEeCCCCEEEEEEC
Confidence 478999999999988644
No 64
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=21.49 E-value=88 Score=16.22 Aligned_cols=18 Identities=17% Similarity=0.124 Sum_probs=14.2
Q ss_pred ceEEEEeCCCCEEEEeHH
Q 043302 5 KKITLKSLDGKAFKVDEV 22 (71)
Q Consensus 5 ~~i~L~SsDg~~f~v~~~ 22 (71)
..|++++.+|+.|.++..
T Consensus 6 m~i~Vk~~~g~~~~~~v~ 23 (90)
T 4dwf_A 6 LEVLVKTLDSQTRTFIVG 23 (90)
T ss_dssp EEEEEEETTCCEEEEEEE
T ss_pred EEEEEEcCCCCEEEEEEC
Confidence 468899999999887543
No 65
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=21.02 E-value=93 Score=17.54 Aligned_cols=17 Identities=18% Similarity=0.309 Sum_probs=14.5
Q ss_pred ceEEEEeCCCCEEEEeH
Q 043302 5 KKITLKSLDGKAFKVDE 21 (71)
Q Consensus 5 ~~i~L~SsDg~~f~v~~ 21 (71)
..|++++.+|..|.|+.
T Consensus 8 M~I~Vk~l~g~~~~v~V 24 (105)
T 1v2y_A 8 MTVRVCKMDGEVMPVVV 24 (105)
T ss_dssp EEEEEECSSSCEEEEEE
T ss_pred EEEEEEecCCCEEEEEE
Confidence 47999999999999863
No 66
>2gq0_A Chaperone protein HTPG; molecular chaperone, HSP90, E. coli, hydrolase; 1.90A {Escherichia coli}
Probab=20.93 E-value=61 Score=22.01 Aligned_cols=23 Identities=9% Similarity=0.167 Sum_probs=14.3
Q ss_pred eCCCCEEEEeHHHHHHhHHHHHH
Q 043302 11 SLDGKAFKVDEVVALESQTIEHM 33 (71)
Q Consensus 11 SsDg~~f~v~~~~a~~S~~i~~m 33 (71)
.|+.-..-|+|+..++++.|+.+
T Consensus 98 DS~DLPLNvSRE~LQ~~~~lk~I 120 (303)
T 2gq0_A 98 DSSDLPLNVSREILQDSTVTRNL 120 (303)
T ss_dssp EESSSCTTCCHHHHHHCHHHHHH
T ss_pred ccccCCcccchHhhcccHHHHHH
Confidence 34444455677777777777654
No 67
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=20.36 E-value=92 Score=15.64 Aligned_cols=17 Identities=12% Similarity=0.159 Sum_probs=13.3
Q ss_pred ceEEEEeCCCCEEEEeH
Q 043302 5 KKITLKSLDGKAFKVDE 21 (71)
Q Consensus 5 ~~i~L~SsDg~~f~v~~ 21 (71)
-.|++++.+|..+.++-
T Consensus 4 m~i~vk~~~g~~~~~~v 20 (79)
T 2uyz_B 4 IKLKVIGQDSSEIHFKV 20 (79)
T ss_dssp EEEEEECTTCCEEEEEE
T ss_pred EEEEEECCCCCEEEEEE
Confidence 46889999999876643
No 68
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.32 E-value=64 Score=18.44 Aligned_cols=14 Identities=0% Similarity=-0.043 Sum_probs=10.8
Q ss_pred HHHHHHhhhcCCCC
Q 043302 54 SKVINLLTVSSTSK 67 (71)
Q Consensus 54 ~kViewc~~h~~d~ 67 (71)
+.++.||+.+-...
T Consensus 12 ~~LL~W~~~~~~~y 25 (119)
T 2d89_A 12 QSLLVWCKEVTKNY 25 (119)
T ss_dssp HHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhccC
Confidence 56789999987654
No 69
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=20.22 E-value=82 Score=17.92 Aligned_cols=24 Identities=13% Similarity=0.004 Sum_probs=18.8
Q ss_pred cccCCCCCHHHHHHHHHHhhhcCC
Q 043302 42 KIPLPNVTSKILSKVINLLTVSST 65 (71)
Q Consensus 42 ~Ipl~~V~~~~L~kViewc~~h~~ 65 (71)
.|-=.+.+..+.+++..||+.++-
T Consensus 46 VilA~D~~~~~~~~i~~~c~~~~i 69 (112)
T 3iz5_f 46 IILANNCPPLRKSEIETYAMLAKI 69 (112)
T ss_dssp EEECSCCCHHHHHHHHHHHHHTTC
T ss_pred EEEeCCCCHHHHHHHHHHHHHcCC
Confidence 343447889999999999998763
Done!