Query 043303
Match_columns 1639
No_of_seqs 32 out of 34
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 05:42:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043303.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043303hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bgw_A XPF endonuclease; hydro 97.5 0.0062 2.1E-07 63.5 19.5 185 957-1179 8-209 (219)
2 2ziu_A MUS81 protein; helix-ha 94.1 0.36 1.2E-05 52.9 12.4 183 957-1157 19-265 (311)
3 1j23_A HEF nuclease, ATP-depen 88.6 1 3.5E-05 45.3 7.7 123 957-1110 4-132 (143)
4 1wp9_A ATP-dependent RNA helic 76.6 14 0.00046 39.7 10.8 227 616-859 201-449 (494)
5 2zix_A Crossover junction endo 47.7 2.8 9.6E-05 46.2 -1.1 139 958-1110 25-175 (307)
6 1mio_B Nitrogenase molybdenum 40.6 9.8 0.00033 44.0 1.8 77 707-802 266-343 (458)
7 2a1j_A DNA repair endonuclease 40.3 29 0.00098 30.7 4.3 41 1128-1169 3-43 (63)
8 1qgu_B Protein (nitrogenase mo 39.7 7.8 0.00027 45.8 0.9 77 709-803 316-392 (519)
9 1z00_B DNA repair endonuclease 38.2 34 0.0012 32.1 4.7 44 1125-1169 14-57 (84)
10 3aek_A Light-independent proto 36.5 11 0.00039 43.2 1.5 79 709-803 260-340 (437)
11 3pdi_B Nitrogenase MOFE cofact 32.3 11 0.00037 43.9 0.5 79 707-803 267-345 (458)
12 3u7q_A Nitrogenase molybdenum- 28.9 14 0.00047 43.6 0.6 81 707-803 298-380 (492)
13 3u7q_B Nitrogenase molybdenum- 28.6 16 0.00054 43.5 1.0 79 707-803 318-396 (523)
14 1mio_A Nitrogenase molybdenum 24.8 24 0.00081 42.1 1.6 83 707-802 284-366 (533)
15 3pdi_A Nitrogenase MOFE cofact 22.9 25 0.00085 41.3 1.2 82 707-803 281-364 (483)
16 2xdq_A Light-independent proto 21.3 15 0.0005 42.2 -1.1 78 707-803 272-349 (460)
17 4gfj_A Topoisomerase V; helix- 20.5 77 0.0026 38.0 4.5 135 1033-1181 349-516 (685)
No 1
>2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A
Probab=97.49 E-value=0.0062 Score=63.54 Aligned_cols=185 Identities=17% Similarity=0.189 Sum_probs=119.5
Q ss_pred cEEEEEeccccccceeeehhhHHHHHH-HHhhcCceEEeecCCCCcceeccCceeEEEeecccccccccccccccccchh
Q 043303 957 VTVIVVNTQNVDKEMIVSRRSTYQKIL-ALEKEGVQVVERDSDLPVDIIISTATCLVWYDYRNIGKKATALDEASSCLPL 1035 (1639)
Q Consensus 957 ~~ViVVNt~~~~k~mI~sRRssYq~IL-aLEkeG~qVVERd~~LPVDliLS~s~CLvwy~~~~l~~~~~~~~g~sS~lp~ 1035 (1639)
..+|||+++++. +. ++ .|.+.|+.|+-|.+.+ -|.++++.+|. -... +..
T Consensus 8 ~~~iivD~RE~~--------s~---~~~~l~~~gv~~~~~~L~v-gDy~~~~~~~V-ERKs----------------~~D 58 (219)
T 2bgw_A 8 RPRVYVDVREER--------SP---VPSILESLGVQVIPKQLPM-GDYLVSDSIIV-ERKT----------------SSD 58 (219)
T ss_dssp SCEEEEETTTTT--------SS---HHHHHHHTTCEEEEECCSS-SSEEEETTEEE-EEEE----------------HHH
T ss_pred CeEEEEECCCcc--------cH---hHHHHHhCCCEEEEEEcCc-CCEEeeCCeEE-EeCC----------------HHH
Confidence 478999997743 22 33 5667799999999888 89999875443 2221 123
Q ss_pred hHH----HHHHHHHHhhhcccceeEEEEeCCchh------HHHHHhhhHHHHHHHhhcCccEEEEEeCCcchhHHHHHHH
Q 043303 1036 CVE----NIATNVLTLLSFTFSVCIMVFEGDTNF------ICTVMESSDGLYAAAASLGLDLQLFCSNSSELTDEIIVSC 1105 (1639)
Q Consensus 1036 ~IE----~ia~nvL~aLSfsFs~CimIFEGe~~F------ls~vL~~~d~LYAAaaslGidlqlfiS~s~e~TdeIIls~ 1105 (1639)
++. ...-..+..|.=+|...+++.||+..- -.+++.. |...++.. ++.++.+.++++|+.++ ..
T Consensus 59 l~~Si~~~Rl~~Q~~~l~~~~~~~~lliE~d~~~~~~~~~~~~i~~~---l~~~~~~~--~~~vi~t~s~~eta~~l-~~ 132 (219)
T 2bgw_A 59 FAKSLFDGRLFEQASRLAEHYETVFIIVEGPPVPRRYRGRERSLYAA---MAALQLDY--GIRLMNTMDPKGTALVI-ES 132 (219)
T ss_dssp HHHHHHHSHHHHHHHHHHHHCSEEEEEEESCSSCGGGTTTHHHHHHH---HHHHHHHS--CCEEEEESSHHHHHHHH-HH
T ss_pred HHHHhhcCcHHHHHHHHHHhcCCcEEEEEecCccccccCCHHHHHHH---HHHHHHHC--CceEEEcCCHHHHHHHH-HH
Confidence 332 344566666766699999999998643 2233322 22223334 66888999999999997 66
Q ss_pred HhhhhhhcCCCC--C-CCCCCcchh---hhhcccCCCCCHHHHHHHHhCCccHHHHHhhchHHHHHHhhccCCChhhHHH
Q 043303 1106 IGNSIKLTSGLY--P-KMPESETLA---ESFLTKFPSVNPLTAHAMLSSKGMLLELLECRHEQRIIAVKKYHVPEESTNL 1179 (1639)
Q Consensus 1106 I~~~~~~sk~~~--s-~mpESpS~e---EsfLt~FPsINPLtA~~mLssg~sL~efl~wa~~~qlq~l~~y~Vpeeslkl 1179 (1639)
++....-..++. . .-....+.. ...|+..|.|+|-+|..|+..=+++..++. +...+|.++. .|.++..+-
T Consensus 133 l~~~~~~~~~~ai~~~~~~~~~~~~~~~~~~L~~i~gVg~~~a~~Ll~~fgs~~~l~~-a~~e~L~~v~--GiG~~~a~~ 209 (219)
T 2bgw_A 133 LARLSTREGGQRIVIHKKPRLSDVREWQLYILQSFPGIGRRTAERILERFGSLERFFT-ASKAEISKVE--GIGEKRAEE 209 (219)
T ss_dssp HHHHHSCBCCTTCCCCCCCCCCHHHHHHHHHHHTSTTCCHHHHHHHHHHHSSHHHHTT-CCHHHHHHST--TCCHHHHHH
T ss_pred HHHhcccccccccccccccccccHHHHHHHHHhcCCCCCHHHHHHHHHHcCCHHHHHh-CCHHHHhhCC--CCCHHHHHH
Confidence 666542111111 0 111223433 335789999999999999999889988877 7777777664 356655443
No 2
>2ziu_A MUS81 protein; helix-hairpin-helix, alternative splicing, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; 2.70A {Danio rerio} PDB: 2ziv_A 2ziw_A
Probab=94.06 E-value=0.36 Score=52.91 Aligned_cols=183 Identities=16% Similarity=0.114 Sum_probs=108.5
Q ss_pred cEEEEEeccccccceeeehhhHHHHHH-HHhhcCceEEeecCCCCccee--ccCce-------------eEEEeeccccc
Q 043303 957 VTVIVVNTQNVDKEMIVSRRSTYQKIL-ALEKEGVQVVERDSDLPVDII--ISTAT-------------CLVWYDYRNIG 1020 (1639)
Q Consensus 957 ~~ViVVNt~~~~k~mI~sRRssYq~IL-aLEkeG~qVVERd~~LPVDli--LS~s~-------------CLvwy~~~~l~ 1020 (1639)
..+|||-++++. ..-..+| +.+. .|.+.|+.|+-|.+.+ =|.| +++-. .+| .+ .-+.
T Consensus 19 ~~~ivvD~RE~~-~~~~~~~---~~~~~~l~~~gv~~~~~~L~v-GDyiw~~~~~~~~~~~~~~~~~~~e~v-l~-~~VE 91 (311)
T 2ziu_A 19 DIVLCVDLCETT-GGSSVRK---QELVKELQRNSVTFDVRKLNV-GDFLWVARERVTPVPGQLRPPVGKELV-LD-YIIE 91 (311)
T ss_dssp EEEEEECGGGSC-C-----C---CHHHHHHHTTTCCEECCCCSS-CSEEEEEEECCCCCTTCSSCCCCCEEE-EE-EEEE
T ss_pred EEEEEEECcccc-CCccchH---HHHHHHHHHCCCCeEEEecCc-cCEEEEEecCCCccccccccccCceee-ee-eEeE
Confidence 477888885522 1000022 2344 6788999999999988 6744 22110 000 00 0011
Q ss_pred ccccccccccccchhhHH----HHHHHHHHhhhcc-cceeEEEEeCCch-hHHHHHhhhHHHHHHHhhcCc--cEEEEEe
Q 043303 1021 KKATALDEASSCLPLCVE----NIATNVLTLLSFT-FSVCIMVFEGDTN-FICTVMESSDGLYAAAASLGL--DLQLFCS 1092 (1639)
Q Consensus 1021 ~~~~~~~g~sS~lp~~IE----~ia~nvL~aLSfs-Fs~CimIFEGe~~-Fls~vL~~~d~LYAAaaslGi--dlqlfiS 1092 (1639)
.| . +...+. ....++.-.|.=+ |..++++.||... +.. .--+-+.|..|.+++-+ .+.++.+
T Consensus 92 RK--~-------~~Dl~~Si~dgR~~~Q~~rl~~~g~~~~~ylIE~~~~~~~~-~~~~~~~i~~aL~~l~v~~g~~Vi~t 161 (311)
T 2ziu_A 92 RK--R-------MDDLCGSIIDGRFREQKFRLKRCGLRKPIYLVEECGSAAAH-LSIPESTLQQAIVNTQVVDGFFVKRV 161 (311)
T ss_dssp EE--E-------HHHHHHHHHHTCHHHHHHHHHTTSCSEEEEEEESCSSSHHH-HSSCHHHHHHHHHHHHHTTCCEEEEC
T ss_pred ec--c-------HHHHHHHHhcchHHHHHHHHHhCCCCCeEEEEecCCccccc-cCCCHHHHHHHHHHHhhhcCeEEEEe
Confidence 12 1 233333 3445667777766 9999999999865 221 12233556666655444 6788999
Q ss_pred CCcchhHHHHHHHHhhhh-hhcCCC-CCCCC-----------------------------------CCcchhhhhc---c
Q 043303 1093 NSSELTDEIIVSCIGNSI-KLTSGL-YPKMP-----------------------------------ESETLAESFL---T 1132 (1639)
Q Consensus 1093 ~s~e~TdeIIls~I~~~~-~~sk~~-~s~mp-----------------------------------ESpS~eEsfL---t 1132 (1639)
.++++|+++| ..++.+. .+.+.. ..-+| ...|..|.|+ .
T Consensus 162 ~s~~eTa~~l-~~lt~~i~~~y~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~f~~f~~~~~k~~~~t~~e~~~~mL~ 240 (311)
T 2ziu_A 162 QDAKESAAYL-TIMTRYLQKLYQNCTLFCRSRELEGDGEAESEKMVANLSCSLMAFTEFNYGAIKNKCQTVREVFARQLM 240 (311)
T ss_dssp SSHHHHHHHH-HHHHHHHHHTTTTCCBCCC----------------CCSCSCCEEHHHHHHHHHHHTCCBHHHHHHHHHT
T ss_pred CCHHHHHHHH-HHHHHHHHHHhccccccccCcchhccccccccccccCcccccccHHHHHHhcccccCCcHHHHHHHHHH
Confidence 9999999997 5555544 222210 00000 1234455554 7
Q ss_pred cCCCCCHHHHHHHHhCCccHHHHHh
Q 043303 1133 KFPSVNPLTAHAMLSSKGMLLELLE 1157 (1639)
Q Consensus 1133 ~FPsINPLtA~~mLssg~sL~efl~ 1157 (1639)
.+|.|.|=.|.+|+..=+|+..++.
T Consensus 241 ~IpGVs~~~A~~I~~~ypTp~~L~~ 265 (311)
T 2ziu_A 241 QISGVSGDKAAAVLEHYSTVSSLLQ 265 (311)
T ss_dssp TBTTCCHHHHHHHHHHCSSHHHHHH
T ss_pred hccCCCHHHHHHHHHHCCCHHHHHH
Confidence 8999999999999999999998877
No 3
>1j23_A HEF nuclease, ATP-dependent RNA helicase, putative; structure-specific endonuclease, hydrolase; 1.78A {Pyrococcus furiosus} SCOP: c.52.1.20 PDB: 1j22_A 1j24_A 1j25_A
Probab=88.59 E-value=1 Score=45.34 Aligned_cols=123 Identities=22% Similarity=0.261 Sum_probs=77.3
Q ss_pred cEEEEEeccccccceeeehhhHHHHHHHHhhcCceEEeecCCCCcceeccCceeEEEeecccccccccccccccccchhh
Q 043303 957 VTVIVVNTQNVDKEMIVSRRSTYQKILALEKEGVQVVERDSDLPVDIIISTATCLVWYDYRNIGKKATALDEASSCLPLC 1036 (1639)
Q Consensus 957 ~~ViVVNt~~~~k~mI~sRRssYq~ILaLEkeG~qVVERd~~LPVDliLS~s~CLvwy~~~~l~~~~~~~~g~sS~lp~~ 1036 (1639)
..+|||-++++. +.+.. .|.+.|++|+-|.+.+ =|.++++-+|. ..|+ +...
T Consensus 4 ~~~IiVD~RE~~--------s~~~~--~L~~~gv~~~~~~L~v-GDyi~~~~~~V--------ERKs---------~~DL 55 (143)
T 1j23_A 4 GVKVVVDSRELR--------SEVVK--RLKLLGVKLEVKTLDV-GDYIISEDVAI--------ERKS---------ANDL 55 (143)
T ss_dssp -CEEEEEGGGTT--------SHHHH--HHHHTTCEEEEECCSS-CSEECSSSEEE--------EEEE---------HHHH
T ss_pred CcEEEEECCCcc--------hHhHH--HHHHCCCeEEEEECCC-CCEEecCCcEE--------Eecc---------HHHH
Confidence 357888886642 22222 5667899999999999 89988874332 2221 2233
Q ss_pred HHHH----HHHHHHhhhcccceeEEEEeCCchhHHHHHhhhHHHHHHHhhcCc--cEEEEEeCCcchhHHHHHHHHhhhh
Q 043303 1037 VENI----ATNVLTLLSFTFSVCIMVFEGDTNFICTVMESSDGLYAAAASLGL--DLQLFCSNSSELTDEIIVSCIGNSI 1110 (1639)
Q Consensus 1037 IE~i----a~nvL~aLSfsFs~CimIFEGe~~Fls~vL~~~d~LYAAaaslGi--dlqlfiS~s~e~TdeIIls~I~~~~ 1110 (1639)
+.+| ...++-.|.=.|...+++.||+ .|... --+-..|+.|.+++-+ .+.+..|.++++|+.++ ..++...
T Consensus 56 ~~Si~dgRl~~Q~~rL~~~~~~~~~LIE~~-~~~~~-~~~~~~l~~al~~~~~~~g~~vi~t~~~~~Ta~~l-~~l~~~~ 132 (143)
T 1j23_A 56 IQSIIDGGLFDQVKRLKEAYSRPIMIVEGS-LYGIR-NVHPNAIRGAIAAVTVDFGVPIIFSSTPEETAQYI-FLIAKRE 132 (143)
T ss_dssp HHHHHTTCHHHHHHHHHHHCSEEEEEEESC-CTTCC-SSCHHHHHHHHHHHHHTSCCCEEEESSHHHHHHHH-HHHHHHH
T ss_pred HHhhhcchHHHHHHHHHhcCCccEEEEEcC-Ccccc-cCCHHHHHHHHHHHHHHcCeeEEEcCCHHHHHHHH-HHHHHhh
Confidence 3333 4455556666799999999998 34211 1133445555544422 56788999999999997 5555443
No 4
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=76.64 E-value=14 Score=39.72 Aligned_cols=227 Identities=10% Similarity=0.099 Sum_probs=126.7
Q ss_pred ceeEEEeecccchhHHHHHHHHHHHHhhhhccccccccccCcccccccCcchhhhhhhhhh---ccccccccCCCCCchh
Q 043303 616 QWDVTLYKVKLSDDILALIDIFKKSYLAIVHNETELSSFVTSDDFKLLSLPKQRLMDCINR---KRFQKANSHGDGNCMA 692 (1639)
Q Consensus 616 ~~~i~lh~V~lSd~I~~Li~~~~ksYls~l~~~te~~h~~d~d~~kll~i~K~kL~d~I~~---~~s~~~~~~~~~~~m~ 692 (1639)
...+....+.+++.+..+...+...+...++.-.... +... ....+++..+.++-.. .-.. .....+.....
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 275 (494)
T 1wp9_A 201 GIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETG-LLES---SSPDIPKKEVLRAGQIINEEMAK-GNHDLRGLLLY 275 (494)
T ss_dssp CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHT-SSSC---CCTTSCHHHHHHHHHHHHHHHTT-TCCSTTTHHHH
T ss_pred CCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhc-cccc---cCCCcchhHHHHHHHHHHHHhhc-cccchhhHHHH
Confidence 3445677788899998888888777766555332211 1211 0123555444333211 1001 11223333344
Q ss_pred HHHHHHHHhhhhhheeeccchhhhHHhhhhhhccccccchh---------hhHHHHHhhccccccccCCCCchHHHHHHH
Q 043303 693 LITLCSIKLMAWYTCFYGIHTARLCVDKLCKSQGCLKSRLG---------SLQSLVVAADGKIDKETSSHPSLLVIQGIL 763 (1639)
Q Consensus 693 li~L~aiKQaA~ylcfyGIH~Ahlyl~~l~~s~e~~~~~L~---------~i~slI~~a~~kve~~~~sHPsL~~Iq~iL 763 (1639)
+..+..+.++...+.-.|.....-|+.+++..... .... .++.+++......+ .-..++++..+..+|
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~k~~~l~~~l 352 (494)
T 1wp9_A 276 HAMALKLHHAIELLETQGLSALRAYIKKLYEEAKA--GSTKASKEIFSDKRMKKAISLLVQAKE-IGLDHPKMDKLKEII 352 (494)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT--TCCHHHHHHHTSHHHHHHHHHHHHHHH-HTCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhcc--ccchhhhhhhhhHHHHHHHHHHHHHHh-cCCCChHHHHHHHHH
Confidence 45555666666677777888888888776643211 1111 11122211111000 136788999999999
Q ss_pred hhccc-cCCceEEEEe-chhHHHHHHHHHHhcCCccccccCcc--------cccCCccccccccccccccccCCCcceee
Q 043303 764 QSNSS-QSNLKVLIVA-EQSFWWSLKCLVMSMGLSCSELQNFY--------THVDQPDVTKVYGSASAKMTDLPISDCLM 833 (1639)
Q Consensus 764 ~s~~~-~~~~K~LIVa-d~~Fwlslk~~L~sMg~s~~el~~~~--------~s~~~~D~~e~~~f~~~~~~~L~~SDCLL 833 (1639)
..... ..+.|+||.+ -+..--.+.+.|...|..+..+.+.. ....+...+++ |... ..++|+
T Consensus 353 ~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~--F~~~------~~~vLv 424 (494)
T 1wp9_A 353 REQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDE--FARG------EFNVLV 424 (494)
T ss_dssp HHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHH--HHHT------SCSEEE
T ss_pred HHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHH--HhcC------CceEEE
Confidence 88653 2378999988 55556667888988899988888721 21123334444 2221 245666
Q ss_pred ecccccccCCCcccceeEEEecCCCC
Q 043303 834 VSHESVSASFPFKKFSLILEYGGSHG 859 (1639)
Q Consensus 834 ~s~~hI~~sFPf~~F~iIveYggs~~ 859 (1639)
++ .-...+.-+-.-..+|-|+.+..
T Consensus 425 ~T-~~~~~Gldl~~~~~Vi~~d~~~~ 449 (494)
T 1wp9_A 425 AT-SVGEEGLDVPEVDLVVFYEPVPS 449 (494)
T ss_dssp EC-GGGGGGGGSTTCCEEEESSCCHH
T ss_pred EC-CccccCCCchhCCEEEEeCCCCC
Confidence 65 44557777777788888886643
No 5
>2zix_A Crossover junction endonuclease MUS81; helix-hairpin-helix, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium, metal-binding, nucleus; 3.50A {Homo sapiens}
Probab=47.75 E-value=2.8 Score=46.16 Aligned_cols=139 Identities=11% Similarity=0.101 Sum_probs=75.2
Q ss_pred EEEEEeccccccceeeehhhHHHHHH-HHhhcCceEEeecCCCCcceec--cCceeEEE--eec----cccccccccccc
Q 043303 958 TVIVVNTQNVDKEMIVSRRSTYQKIL-ALEKEGVQVVERDSDLPVDIII--STATCLVW--YDY----RNIGKKATALDE 1028 (1639)
Q Consensus 958 ~ViVVNt~~~~k~mI~sRRssYq~IL-aLEkeG~qVVERd~~LPVDliL--S~s~CLvw--y~~----~~l~~~~~~~~g 1028 (1639)
.+|||-++++.- .++|. .+. .|.+.|++|+-|.+.+ =|.|+ ++...-.- ++. .-+..| ..+.
T Consensus 25 ~~ivvD~RE~~~---~~~~~---~~~~~L~~~gv~~~~~~L~v-GDyi~i~~~~~~~~~~~~~e~vl~~iVERK--s~~D 95 (307)
T 2zix_A 25 VLLCVDIGETRG---GGHRP---ELLRELQRLHVTHTVRKLHV-GDFVWVAQETNPRDPANPGELVLDHIVERK--RLDD 95 (307)
T ss_dssp CCCBCCSSSCCC------CC---TTSTTTGGGCCCCCCCCCCS-SSBBCCCCCCC----CCCCCCCCSEEECCC--CTTT
T ss_pred EEEEEECccccc---CcchH---HHHHHHHHCCCCeEEEeCCC-CCEEEEEecCCCCcccccceeeeeeeeeee--eHHH
Confidence 567777755321 11121 133 5778899999999888 68664 33211000 000 001222 1222
Q ss_pred ccccchhhHHHHHHHHHHhhhcc-cceeEEEEeCCchhHHHHHhhhHHHHHHHhhcCc--cEEEEEeCCcchhHHHHHHH
Q 043303 1029 ASSCLPLCVENIATNVLTLLSFT-FSVCIMVFEGDTNFICTVMESSDGLYAAAASLGL--DLQLFCSNSSELTDEIIVSC 1105 (1639)
Q Consensus 1029 ~sS~lp~~IE~ia~nvL~aLSfs-Fs~CimIFEGe~~Fls~vL~~~d~LYAAaaslGi--dlqlfiS~s~e~TdeIIls~ 1105 (1639)
..+|+ .+....++.-.|.=+ |..++++.||...+...-+ +-+.|..|.+.+-+ .+.+..+.++++|+++| ..
T Consensus 96 l~~Si---~dgRl~~Q~~rl~~~g~~~~~ylIE~~~~~~~~~~-~~~~i~~al~~l~~~~~~~i~~t~~~~~Ta~~l-~~ 170 (307)
T 2zix_A 96 LCSSI---IDGRFREQKFRLKRCGLERRVYLVEEHGSVHNLSL-PESTLLQAVTNTQVIDGFFVKRTADIKESAAYL-AL 170 (307)
T ss_dssp THHHH---SSSHHHHHTTTTCTTTCBEEECCBSCCCSSSSCSS-CHHHHHHHHHHHHHSSCCCCCBCCSHHHHTHHH-HH
T ss_pred HHHHh---cCCcHHHHHHHHHhCCCCCeEEEEecCCcccccCC-CHHHHHHHHHHHhhhcCeEEEEeCCHHHHHHHH-HH
Confidence 12111 124456677777777 9999999999864321111 12344455443322 56778899999999997 55
Q ss_pred Hhhhh
Q 043303 1106 IGNSI 1110 (1639)
Q Consensus 1106 I~~~~ 1110 (1639)
++.+.
T Consensus 171 lt~~l 175 (307)
T 2zix_A 171 LTRGL 175 (307)
T ss_dssp HHTTT
T ss_pred HHHHH
Confidence 55554
No 6
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=40.59 E-value=9.8 Score=43.99 Aligned_cols=77 Identities=10% Similarity=0.132 Sum_probs=54.8
Q ss_pred eeeccchhhhHHhhhhhhccccccchhhhHHHHHhhccccccc-cCCCCchHHHHHHHhhccccCCceEEEEechhHHHH
Q 043303 707 CFYGIHTARLCVDKLCKSQGCLKSRLGSLQSLVVAADGKIDKE-TSSHPSLLVIQGILQSNSSQSNLKVLIVAEQSFWWS 785 (1639)
Q Consensus 707 cfyGIH~Ahlyl~~l~~s~e~~~~~L~~i~slI~~a~~kve~~-~~sHPsL~~Iq~iL~s~~~~~~~K~LIVad~~Fwls 785 (1639)
.+||+....-+|+++++-++.. +...|++++.+.... .+.|+ ...+.|+.|.+|...=++
T Consensus 266 ~p~G~~~T~~~l~~la~~~g~~------~~~~i~~e~~~~~~~~~d~~~-------------~l~gkrv~i~~~~~~~~~ 326 (458)
T 1mio_B 266 TPIGVSATDEFIMALSEATGKE------VPASIEEERGQLIDLMIDAQQ-------------YLQGKKVALLGDPDEIIA 326 (458)
T ss_dssp CCBHHHHHHHHHHHHHHHHCCC------CCHHHHHHHHHHHHHHHHTHH-------------HHTTCEEEEEECHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHCCC------chHHHHHHHHHHHHHHHHHHH-------------HcCCCEEEEEcCchHHHH
Confidence 5899999999999999877653 223454444433222 22222 224789999999999999
Q ss_pred HHHHHHhcCCccccccC
Q 043303 786 LKCLVMSMGLSCSELQN 802 (1639)
Q Consensus 786 lk~~L~sMg~s~~el~~ 802 (1639)
+.++|..|||..+....
T Consensus 327 l~~~L~elG~~vv~v~~ 343 (458)
T 1mio_B 327 LSKFIIELGAIPKYVVT 343 (458)
T ss_dssp HHHHHHTTTCEEEEEEE
T ss_pred HHHHHHHCCCEEEEEEe
Confidence 99999999999775443
No 7
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=40.25 E-value=29 Score=30.67 Aligned_cols=41 Identities=20% Similarity=0.366 Sum_probs=37.1
Q ss_pred hhhcccCCCCCHHHHHHHHhCCccHHHHHhhchHHHHHHhhc
Q 043303 1128 ESFLTKFPSVNPLTAHAMLSSKGMLLELLECRHEQRIIAVKK 1169 (1639)
Q Consensus 1128 EsfLt~FPsINPLtA~~mLssg~sL~efl~wa~~~qlq~l~~ 1169 (1639)
.+.|++.|.|+|-.+..||..=+|+..... |..++|+++..
T Consensus 3 ~s~L~~IpGIG~kr~~~LL~~Fgs~~~i~~-As~eeL~~vig 43 (63)
T 2a1j_A 3 QDFLLKMPGVNAKNCRSLMHHVKNIAELAA-LSQDELTSILG 43 (63)
T ss_dssp CHHHHTSTTCCHHHHHHHHHHCSSHHHHHT-CCHHHHHHHHS
T ss_pred HhHHHcCCCCCHHHHHHHHHHcCCHHHHHH-CCHHHHHHHcC
Confidence 578999999999999999999999998887 88999998843
No 8
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Probab=39.75 E-value=7.8 Score=45.84 Aligned_cols=77 Identities=12% Similarity=0.221 Sum_probs=53.6
Q ss_pred eccchhhhHHhhhhhhccccccchhhhHHHHHhhccccccccCCCCchHHHHHHHhhccccCCceEEEEechhHHHHHHH
Q 043303 709 YGIHTARLCVDKLCKSQGCLKSRLGSLQSLVVAADGKIDKETSSHPSLLVIQGILQSNSSQSNLKVLIVAEQSFWWSLKC 788 (1639)
Q Consensus 709 yGIH~Ahlyl~~l~~s~e~~~~~L~~i~slI~~a~~kve~~~~sHPsL~~Iq~iL~s~~~~~~~K~LIVad~~Fwlslk~ 788 (1639)
||+....-+|+++++-++.. +...|+++..+. +..+........|.|+.|.+|....++|.+
T Consensus 316 iG~~~T~~~L~~la~~~g~~------~~~~i~~er~~~------------~~~l~d~~~~l~Gkrv~i~gd~~~~~~la~ 377 (519)
T 1qgu_B 316 LGLAATDELLMTVSQLSGKP------IADALTLERGRL------------VDMMLDSHTWLHGKKFGLYGDPDFVMGLTR 377 (519)
T ss_dssp BSHHHHHHHHHHHHHHHCCC------CCHHHHHHHHHH------------HHHHHHHHHHHTTCEEEEESCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHCCC------cHHHHHHHHHHH------------HHHHHHHHHHcCCCEEEEECCchHHHHHHH
Confidence 99999999999999877643 112344443322 222222222234889999999999999999
Q ss_pred HHHhcCCccccccCc
Q 043303 789 LVMSMGLSCSELQNF 803 (1639)
Q Consensus 789 ~L~sMg~s~~el~~~ 803 (1639)
+|..|||..+....+
T Consensus 378 ~L~ElGm~vv~v~~~ 392 (519)
T 1qgu_B 378 FLLELGCEPTVILSH 392 (519)
T ss_dssp HHHHTTCEEEEEEET
T ss_pred HHHHCCCEEEEEEeC
Confidence 999999997755443
No 9
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=38.20 E-value=34 Score=32.14 Aligned_cols=44 Identities=18% Similarity=0.311 Sum_probs=38.8
Q ss_pred chhhhhcccCCCCCHHHHHHHHhCCccHHHHHhhchHHHHHHhhc
Q 043303 1125 TLAESFLTKFPSVNPLTAHAMLSSKGMLLELLECRHEQRIIAVKK 1169 (1639)
Q Consensus 1125 S~eEsfLt~FPsINPLtA~~mLssg~sL~efl~wa~~~qlq~l~~ 1169 (1639)
+...+.|++.|.|.|-.+..||..-+||.++.. |...+|+++..
T Consensus 14 ~~~~s~L~~IpGIG~kr~~~LL~~FgSl~~i~~-AS~eEL~~vig 57 (84)
T 1z00_B 14 PGPQDFLLKMPGVNAKNCRSLMHHVKNIAELAA-LSQDELTSILG 57 (84)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHHHSSCHHHHHH-SCHHHHHHHHS
T ss_pred ccHHHHHHhCCCCCHHHHHHHHHHcCCHHHHHH-CCHHHHHHHhC
Confidence 345678999999999999999999999999888 88888988843
No 10
>3aek_A Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_A* 3aes_A* 3aer_A* 3aet_A 3aeu_A
Probab=36.48 E-value=11 Score=43.25 Aligned_cols=79 Identities=11% Similarity=0.252 Sum_probs=59.1
Q ss_pred eccchhhhHHhhhhhhccccccchhhhHHHHHhhccccccc-cCCCCchHHHHHHHhhccccCCceEEEEechhHHHHHH
Q 043303 709 YGIHTARLCVDKLCKSQGCLKSRLGSLQSLVVAADGKIDKE-TSSHPSLLVIQGILQSNSSQSNLKVLIVAEQSFWWSLK 787 (1639)
Q Consensus 709 yGIH~Ahlyl~~l~~s~e~~~~~L~~i~slI~~a~~kve~~-~~sHPsL~~Iq~iL~s~~~~~~~K~LIVad~~Fwlslk 787 (1639)
||+....-+|+++++-++..+. .....|+++..+.... .+.|+.|. +.|+.|.+|...=+++.
T Consensus 260 ~G~~~T~~~l~~la~~~g~~~~---~~e~~i~~e~~~~~~~l~~~~~~l~-------------Gkrv~i~g~~~~~~~l~ 323 (437)
T 3aek_A 260 FGEEGTTLWLKAVADAYGVSAE---KFEAVTAAPRARAKKAIAAHLETLT-------------GKSLFMFPDSQLEIPLA 323 (437)
T ss_dssp CHHHHHHHHHHHHHHHTTCCHH---HHHHHHHHHHHHHHHHHHTTHHHHT-------------TCEEEECSSSSCHHHHH
T ss_pred cCHHHHHHHHHHHHHHHCCChh---hHHHHHHHHHHHHHHHHHHHHHHhC-------------CCEEEEEcCchHHHHHH
Confidence 9999999999999988875432 2344566666665544 44444333 68999999999999999
Q ss_pred HHH-HhcCCccccccCc
Q 043303 788 CLV-MSMGLSCSELQNF 803 (1639)
Q Consensus 788 ~~L-~sMg~s~~el~~~ 803 (1639)
++| ..|||..+....+
T Consensus 324 ~~L~~elG~~vv~~~~~ 340 (437)
T 3aek_A 324 RFLARECGMKTTEIATP 340 (437)
T ss_dssp HHHHHTTCCEEEEEEES
T ss_pred HHHHHHcCCEEEEEEec
Confidence 999 9999998866543
No 11
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=32.34 E-value=11 Score=43.95 Aligned_cols=79 Identities=15% Similarity=0.220 Sum_probs=54.2
Q ss_pred eeeccchhhhHHhhhhhhccccccchhhhHHHHHhhccccccccCCCCchHHHHHHHhhccccCCceEEEEechhHHHHH
Q 043303 707 CFYGIHTARLCVDKLCKSQGCLKSRLGSLQSLVVAADGKIDKETSSHPSLLVIQGILQSNSSQSNLKVLIVAEQSFWWSL 786 (1639)
Q Consensus 707 cfyGIH~Ahlyl~~l~~s~e~~~~~L~~i~slI~~a~~kve~~~~sHPsL~~Iq~iL~s~~~~~~~K~LIVad~~Fwlsl 786 (1639)
.+||+....-+|+++++-++.- +...|+++..+.. ..++.......|.|+.|.+|...=+++
T Consensus 267 ~p~G~~~T~~~l~~la~~~g~~------~~~~i~~er~r~~------------~~~~d~~~~l~Gkrv~i~~~~~~~~~l 328 (458)
T 3pdi_B 267 MLYGLDAVDAWLMALAEISGNP------VPDRYKRQRAQLQ------------DAMLDTHFMLSSARTAIAADPDLLLGF 328 (458)
T ss_dssp CSCHHHHHHHHHHHHHHHHSSC------CCHHHHHHHHHHH------------HHHHHHHHHHTTCEEEEECCHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHCCc------hHHHHHHHHHHHH------------HHHHHHHHhcCCCEEEEECCcHHHHHH
Confidence 4899999999999999777641 2233444433222 222221222348999999988888999
Q ss_pred HHHHHhcCCccccccCc
Q 043303 787 KCLVMSMGLSCSELQNF 803 (1639)
Q Consensus 787 k~~L~sMg~s~~el~~~ 803 (1639)
.++|..|||..+.....
T Consensus 329 ~~~L~elGm~vv~~~~~ 345 (458)
T 3pdi_B 329 DALLRSMGAHTVAAVVP 345 (458)
T ss_dssp HHHHHTTTCEEEEEEES
T ss_pred HHHHHHCCCEEEEEEEC
Confidence 99999999998765543
No 12
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A* 3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Probab=28.94 E-value=14 Score=43.56 Aligned_cols=81 Identities=7% Similarity=0.080 Sum_probs=56.5
Q ss_pred eeeccchhhhHHhhhhhhccc-cccchhhhHHHHHhhccccccc-cCCCCchHHHHHHHhhccccCCceEEEEechhHHH
Q 043303 707 CFYGIHTARLCVDKLCKSQGC-LKSRLGSLQSLVVAADGKIDKE-TSSHPSLLVIQGILQSNSSQSNLKVLIVAEQSFWW 784 (1639)
Q Consensus 707 cfyGIH~Ahlyl~~l~~s~e~-~~~~L~~i~slI~~a~~kve~~-~~sHPsL~~Iq~iL~s~~~~~~~K~LIVad~~Fwl 784 (1639)
.+||+....-+|+++++-++. ++.+ ....|+++..+.... .+.|+.| .|.|+.|.++...-+
T Consensus 298 ~p~G~~~T~~~L~~ia~~~g~~~~~~---~e~~i~~e~~~~~~~l~~~~~~l-------------~GKrv~i~g~~~~~~ 361 (492)
T 3u7q_A 298 NFFGPTKTIESLRAIAAKFDESIQKK---CEEVIAKYKPEWEAVVAKYRPRL-------------EGKRVMLYIGGLRPR 361 (492)
T ss_dssp CCSSHHHHHHHHHHHHTTSCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH-------------TTCEEEECBSSSHHH
T ss_pred CccCHHHHHHHHHHHHHHhCCcchHH---HHHHHHHHHHHHHHHHHHHHHHh-------------CCCEEEEECCCchHH
Confidence 589999999999999987763 2221 223466555544433 2222211 378999988888999
Q ss_pred HHHHHHHhcCCccccccCc
Q 043303 785 SLKCLVMSMGLSCSELQNF 803 (1639)
Q Consensus 785 slk~~L~sMg~s~~el~~~ 803 (1639)
++.++|..|||..+..+.+
T Consensus 362 ~la~~L~ElGm~vv~~gt~ 380 (492)
T 3u7q_A 362 HVIGAYEDLGMEVVGTGYE 380 (492)
T ss_dssp HTHHHHHTTTCEEEEEEES
T ss_pred HHHHHHHHCCCEEEEEeCC
Confidence 9999999999998875544
No 13
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B*
Probab=28.56 E-value=16 Score=43.54 Aligned_cols=79 Identities=10% Similarity=0.114 Sum_probs=54.0
Q ss_pred eeeccchhhhHHhhhhhhccccccchhhhHHHHHhhccccccccCCCCchHHHHHHHhhccccCCceEEEEechhHHHHH
Q 043303 707 CFYGIHTARLCVDKLCKSQGCLKSRLGSLQSLVVAADGKIDKETSSHPSLLVIQGILQSNSSQSNLKVLIVAEQSFWWSL 786 (1639)
Q Consensus 707 cfyGIH~Ahlyl~~l~~s~e~~~~~L~~i~slI~~a~~kve~~~~sHPsL~~Iq~iL~s~~~~~~~K~LIVad~~Fwlsl 786 (1639)
.+||+....-+|+++++-++... ...|++++.+... .+........|.|+.|.+|...=++|
T Consensus 318 ~PiG~~~T~~~l~~la~~~g~~~------~~~i~~er~r~~~------------~l~d~~~~l~GKrvaI~gd~~~~~~l 379 (523)
T 3u7q_B 318 IPMGLDWTDEFLMKVSEISGQPI------PASLTKERGRLVD------------MMTDSHTWLHGKRFALWGDPDFVMGL 379 (523)
T ss_dssp CSCHHHHHHHHHHHHHHHHCCCC------CHHHHHHHHHHHH------------HHHHHHHHHTTCEEEEECSHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHHCCCh------hHHHHHHHHHHHH------------HHHHHHHhcCCCEEEEECCchHHHHH
Confidence 57999999999999997776431 2234444433221 22111122348999999999999999
Q ss_pred HHHHHhcCCccccccCc
Q 043303 787 KCLVMSMGLSCSELQNF 803 (1639)
Q Consensus 787 k~~L~sMg~s~~el~~~ 803 (1639)
.++|..|||..+....+
T Consensus 380 a~fL~elGm~vv~v~~~ 396 (523)
T 3u7q_B 380 VKFLLELGCEPVHILCH 396 (523)
T ss_dssp HHHHHHTTCEEEEEEET
T ss_pred HHHHHHcCCEEEEEEeC
Confidence 99999999998766543
No 14
>1mio_A Nitrogenase molybdenum iron protein (alpha chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=24.81 E-value=24 Score=42.13 Aligned_cols=83 Identities=8% Similarity=0.047 Sum_probs=56.4
Q ss_pred eeeccchhhhHHhhhhhhccccccchhhhHHHHHhhccccccccCCCCchHHHHHHHhhccccCCceEEEEechhHHHHH
Q 043303 707 CFYGIHTARLCVDKLCKSQGCLKSRLGSLQSLVVAADGKIDKETSSHPSLLVIQGILQSNSSQSNLKVLIVAEQSFWWSL 786 (1639)
Q Consensus 707 cfyGIH~Ahlyl~~l~~s~e~~~~~L~~i~slI~~a~~kve~~~~sHPsL~~Iq~iL~s~~~~~~~K~LIVad~~Fwlsl 786 (1639)
.+||+....-+|+++++-++. +..-..+...|+++..++... |..+... ..|.|+.|.++...=+++
T Consensus 284 ~piG~~~T~~~Lr~ia~~~g~-~~~~~~~e~~i~~e~~~~~~~---------l~~~~~~---l~GKrv~i~~~~~~~~~l 350 (533)
T 1mio_A 284 NFIGVDGIVETLRDMAKCFDD-PELTKRTEEVIAEEIAAIQDD---------LDYFKEK---LQGKTACLYVGGSRSHTY 350 (533)
T ss_dssp CCSSHHHHHHHHHHHHHHSCC-HHHHHHHHHHHHHHHHHHHHH---------HHHHHHH---HTTCEEEEEESSSHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHhCC-CcccccchHHHHHHHHHHHHH---------HHHHHHH---hCCCEEEEECCchHHHHH
Confidence 499999999999999987763 011123445566666555433 2222111 137899999877777888
Q ss_pred HHHHHhcCCccccccC
Q 043303 787 KCLVMSMGLSCSELQN 802 (1639)
Q Consensus 787 k~~L~sMg~s~~el~~ 802 (1639)
.++|..|||..+....
T Consensus 351 ~~~l~ElGm~vv~~~t 366 (533)
T 1mio_A 351 MNMLKSFGVDSLVAGF 366 (533)
T ss_dssp HHHHHHHTCEEEEEEE
T ss_pred HHHHHHCCCEEEEEEe
Confidence 8899999999876654
No 15
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=22.86 E-value=25 Score=41.26 Aligned_cols=82 Identities=15% Similarity=0.273 Sum_probs=54.8
Q ss_pred eeeccchhhhHHhhhhhhccc--cccchhhhHHHHHhhccccccccCCCCchHHHHHHHhhccccCCceEEEEechhHHH
Q 043303 707 CFYGIHTARLCVDKLCKSQGC--LKSRLGSLQSLVVAADGKIDKETSSHPSLLVIQGILQSNSSQSNLKVLIVAEQSFWW 784 (1639)
Q Consensus 707 cfyGIH~Ahlyl~~l~~s~e~--~~~~L~~i~slI~~a~~kve~~~~sHPsL~~Iq~iL~s~~~~~~~K~LIVad~~Fwl 784 (1639)
.+||+....-+|+++++-++. ++. .....|+++..+.... |..+...+ .|.|+.|.++...=+
T Consensus 281 ~p~Gi~~T~~~L~~ia~~~g~~~i~~---~~e~~i~~er~~~~~a---------l~~~~~~l---~GKrv~i~~~~~~~~ 345 (483)
T 3pdi_A 281 SFYGITDTSQALRDFARLLDDPDLTA---RTEALIAREEAKVRAA---------LEPWRARL---EGKRVLLYTGGVKSW 345 (483)
T ss_dssp CSSSHHHHHHHHHHHHHHTTCHHHHH---HHHHHHHHHHHHHHHH---------HHHHHHHH---TTCEEEEECSSSCHH
T ss_pred CCCCHHHHHHHHHHHHHHhCCcchhh---hHHHHHHHHHHHHHHH---------HHHHHHHh---cCCEEEEECCCchHH
Confidence 469999999999999977752 221 2234565555554322 22222222 278999988777777
Q ss_pred HHHHHHHhcCCccccccCc
Q 043303 785 SLKCLVMSMGLSCSELQNF 803 (1639)
Q Consensus 785 slk~~L~sMg~s~~el~~~ 803 (1639)
++.++|..|||..+..+..
T Consensus 346 ~l~~~L~ElGmevv~~gt~ 364 (483)
T 3pdi_A 346 SVVSALQDLGMKVVATGTK 364 (483)
T ss_dssp HHHHHHHHHTCEEEEECBS
T ss_pred HHHHHHHHCCCEEEEEecC
Confidence 8889999999998865543
No 16
>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=21.32 E-value=15 Score=42.24 Aligned_cols=78 Identities=14% Similarity=0.193 Sum_probs=53.6
Q ss_pred eeeccchhhhHHhhhhhhccccccchhhhHHHHHhhccccccccCCCCchHHHHHHHhhccccCCceEEEEechhHHHHH
Q 043303 707 CFYGIHTARLCVDKLCKSQGCLKSRLGSLQSLVVAADGKIDKETSSHPSLLVIQGILQSNSSQSNLKVLIVAEQSFWWSL 786 (1639)
Q Consensus 707 cfyGIH~Ahlyl~~l~~s~e~~~~~L~~i~slI~~a~~kve~~~~sHPsL~~Iq~iL~s~~~~~~~K~LIVad~~Fwlsl 786 (1639)
.+||+....-+|+++++-++..++.+ .++..+.. +.+...+.+| .|.|+.|.+|...=+++
T Consensus 272 ~P~G~~~T~~~Lr~ia~~~g~~~e~i-------~~e~~~~~------~~l~~~~~~l------~GKrv~i~g~~~~~~~l 332 (460)
T 2xdq_A 272 FPIGPDGTRTWIEQICATFGIQPQGL-------AEREAETW------QKLSDYLELV------RGKSVFFMGDNLLEISL 332 (460)
T ss_dssp CSBHHHHHHHHHHHHHHHTTCCCCSC-------HHHHHHHH------HTTHHHHHHH------TTCEEEECCCSSCHHHH
T ss_pred cCccHHHHHHHHHHHHHHHCcCHHHH-------HHHHHHHH------HHHHHHHHHh------cCCEEEEECCchHHHHH
Confidence 48999999999999998887655422 11111111 2222222222 37899999988888899
Q ss_pred HHHHHhcCCccccccCc
Q 043303 787 KCLVMSMGLSCSELQNF 803 (1639)
Q Consensus 787 k~~L~sMg~s~~el~~~ 803 (1639)
.++|..|||..+..+.+
T Consensus 333 a~~L~elGm~vv~~gt~ 349 (460)
T 2xdq_A 333 ARFLIRCGMRVLEIGIP 349 (460)
T ss_dssp HHHHHHTTCEEEEEEES
T ss_pred HHHHHHCCCEEEEeCCC
Confidence 99999999998876544
No 17
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19}
Probab=20.47 E-value=77 Score=38.01 Aligned_cols=135 Identities=10% Similarity=0.040 Sum_probs=87.8
Q ss_pred chhhHHHHHH------HHHHhhhcccceeEEEEeCCch-----hH------HHHHhhh-HHHHHHHhhcCccEEEEEeCC
Q 043303 1033 LPLCVENIAT------NVLTLLSFTFSVCIMVFEGDTN-----FI------CTVMESS-DGLYAAAASLGLDLQLFCSNS 1094 (1639)
Q Consensus 1033 lp~~IE~ia~------nvL~aLSfsFs~CimIFEGe~~-----Fl------s~vL~~~-d~LYAAaaslGidlqlfiS~s 1094 (1639)
++.+|.+|+. ++...|+=.|.+.++|.||+.. |. +++.-.+ -.|...|+-+|+.
T Consensus 349 VsDFInSLiDgdGRLFdQaerLarhYerPVLLIEGDLeEIe~LYteR~IhPNAIRGAveiqLASLAvkfG~g-------- 420 (685)
T 4gfj_A 349 VNRTLATLIDEHGLSPDAADELIEHFESIAGILATDLEEIERMYEEGRLSEEAYRAAVEIQLAELTKKEGVG-------- 420 (685)
T ss_dssp HCHHHHHHHHTTCCCHHHHHHHHHHHSSHHHHHTSCHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHTSTTCC--------
T ss_pred HHHHHHHhhcCCCCHHHHHHHHHHhcCCCEEEEEeccHHhhhhhccCCCCHHHHhhhHhhhhhhhhhhcCCc--------
Confidence 5677777777 6788889999999999999852 21 1121111 1234445555655
Q ss_pred cchhHHHHHHHHhhh----hhhcCCCC-------CCCCC--C--cchhhhhcccCCCCCHHHHHHHHhCCccHHHHHhhc
Q 043303 1095 SELTDEIIVSCIGNS----IKLTSGLY-------PKMPE--S--ETLAESFLTKFPSVNPLTAHAMLSSKGMLLELLECR 1159 (1639)
Q Consensus 1095 ~e~TdeIIls~I~~~----~~~sk~~~-------s~mpE--S--pS~eEsfLt~FPsINPLtA~~mLssg~sL~efl~wa 1159 (1639)
++|++.. -.+++- -..++..- +-+.+ + ....|.-|+.-|.|.|-+|..+|-.=||+...+. |
T Consensus 421 -~eTAe~L-~~~agr~l~leqi~rdrEvgkL~SVpGikek~sktL~eqeamLtAIaGIGp~tAeRLLEkFGSVe~Vm~-A 497 (685)
T 4gfj_A 421 -RKTAERL-LRAFGNPERVKQLAREFEIEKLASVEGVGERVLRSLVPGYASLISIRGIDRERAERLLKKYGGYSKVRE-A 497 (685)
T ss_dssp -HHHHHHH-HHHHSSHHHHHHHHHTTCHHHHHTSTTCCHHHHHHHSTTHHHHHTSTTCCHHHHHHHHHHHTSHHHHHH-S
T ss_pred -hHHHHHH-HHHhcchhhhhhhhhhhhhhcccccccchhhhhcccccceeeeeccCCCCHHHHHHHHHHhcCHHHHHh-C
Confidence 7888875 334433 12222211 11111 1 2223678899999999999999999999997776 9
Q ss_pred hHHHHHHhhccCCChhhHHHHH
Q 043303 1160 HEQRIIAVKKYHVPEESTNLFS 1181 (1639)
Q Consensus 1160 ~~~qlq~l~~y~VpeeslklF~ 1181 (1639)
.+..|++ . .|-++-++-..
T Consensus 498 teDELRe--d-GIGekqarrI~ 516 (685)
T 4gfj_A 498 GVEELRE--D-GLTDAQIRELK 516 (685)
T ss_dssp CHHHHHH--T-TCCHHHHHHHH
T ss_pred CHHHHHH--c-cccHHHHHHHh
Confidence 9999976 5 78877655443
Done!