BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043305
(892 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 239 bits (610), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 171/538 (31%), Positives = 281/538 (52%), Gaps = 41/538 (7%)
Query: 280 PEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTVVEAY 339
PEGL VT+ L + ++M LV+ L A ET+GS +TICSDKTGTLT N+MTV +
Sbjct: 308 PEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMW 367
Query: 340 VGGR--KMNPTDSNSQLSPMVTS---LLVEGIAQNTTGSVYLPPNGG----EAEVSGSPT 390
+ + + T++ S +S TS L + IA +V+ + V+G +
Sbjct: 368 SDNQIHEADTTENQSGVSFDKTSATWLALSRIAGLCNRAVFQANQENLPILKRAVAGDAS 427
Query: 391 EKAILQWGMKLGMNFEAVRSECSVLHVFPFNSLKKRGGVAVQLPNSEVHIH---WKGAAE 447
E A+L+ + + +R + + PFNS K + PN+ H KGA E
Sbjct: 428 ESALLKCIELCCGSVKEMRERYTKIVEIPFNSTNKYQLSIHKNPNTAEPRHLLVMKGAPE 487
Query: 448 IVLDSCTGYIDTDDRLVQMDEDKLLTFKKAIEDMASSSLRCVAIAYRTYERERIPD--EE 505
+LD C+ I + +DE+ F+ A ++ R + + E+ P+ +
Sbjct: 488 RILDRCSS-ILIHGKEQPLDEELKDAFQNAYLELGGLGERVLGFCHLFLPDEQFPEGFQF 546
Query: 506 ELSRWALPEDDLVLLAIVGIKDPCRPSVKDAIRLCRIAGVKVRMVTGDNIQTARAIALEC 565
+ P D+L + ++ + DP R +V DA+ CR AG+KV MVTGD+ TA+AIA
Sbjct: 547 DTDDVNFPLDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGV 606
Query: 566 GILTSEADATEPNI--------------------IEGKSFRALSETQREEIAGEDFGMIC 605
GI+ SE + T +I + G + ++ Q ++I +
Sbjct: 607 GII-SEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDMTSEQLDDIL--KYHTEI 663
Query: 606 VMGRSSPSDKLLLVQALRKRGDVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDI 665
V R+SP KL++V+ +++G +VAVTGDG ND+PA +ADIG+AMGI G++V+K+++D+
Sbjct: 664 VFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPASKKADIGVAMGIAGSDVSKQAADM 723
Query: 666 IILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLL 725
I+LDDNFAS+V V GR ++ N++K I + LT N+ + + +++ +PL V +L
Sbjct: 724 ILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANIPLPLGTVTIL 783
Query: 726 WVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVL 783
++L D + A++LA E +M+R P R P ++ L+ A Q+ ++ L
Sbjct: 784 CIDLGTDMVPAISLAYEQAESDIMKRQP---RNPKTDKLVNEQLISMAYGQIGMIQAL 838
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 239 bits (610), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 181/567 (31%), Positives = 268/567 (47%), Gaps = 64/567 (11%)
Query: 261 VDGAIKILXXXXXXXXXXXPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTI 320
+ GAI PEGLP +T LA R+M A+VR L + ET+G + I
Sbjct: 290 IRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVI 349
Query: 321 CSDKTGTLTLNQMTVVEAYV----------------GGRKMNPTDSNSQLSPMVTSLLVE 364
CSDKTGTLT NQM+V + ++ G P + + S +
Sbjct: 350 CSDKTGTLTTNQMSVCKMFIIDKVDGDFCSLNEFSITGSTYAPEGEVLKNDKPIRSGQFD 409
Query: 365 GIAQNTT-------GSVYLPPNGGEAEVSGSPTEKAILQWGMKLGMNFEAVRSECSVLHV 417
G+ + T S+ G E G TE A+ K+ + VR+ V
Sbjct: 410 GLVELATICALCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERA 469
Query: 418 FPFNSL--------------KKRGGVAVQLPNSEV-------HIHWKGAAEIVLDSCTGY 456
NS+ + R ++V ++ + KGA E V+D C Y
Sbjct: 470 NACNSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCN-Y 528
Query: 457 IDTDDRLVQMD---EDKLLTFKKAIEDMASSSLRCVAIAYRTYERERIPDEEEL-----S 508
+ V M ++K+L+ K +LRC+A+A R+ P EE+ S
Sbjct: 529 VRVGTTRVPMTGPVKEKILSVIKEW-GTGRDTLRCLALA----TRDTPPKREEMVLDDSS 583
Query: 509 RWALPEDDLVLLAIVGIKDPCRPSVKDAIRLCRIAGVKVRMVTGDNIQTARAIALECGIL 568
R+ E DL + +VG+ DP R V +I+LCR AG++V M+TGDN TA AI GI
Sbjct: 584 RFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIF 643
Query: 569 TSEADATEPNIIEGKSFRALSETQREEIAGEDFGMICVMGRSSPSDKLLLVQALRKRGDV 628
E + G+ F L ++ E C R PS K +V+ L+ ++
Sbjct: 644 -GENEEVADRAYTGREFDDLPLAEQREACRR----ACCFARVEPSHKSKIVEYLQSYDEI 698
Query: 629 VAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYAN 688
A+TGDG NDAPAL +A+IG+AMG GT VAK +S++++ DDNF+++V V GR++Y N
Sbjct: 699 TAMTGDGVNDAPALKKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNN 757
Query: 689 IQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHL 748
+++FI++ ++ NV +V F+ A L VQLLWVNL+ D L A AL PP +
Sbjct: 758 MKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDI 817
Query: 749 MQRSPVGRREPLITNIMWRNLLIQASY 775
M R P +EPLI+ ++ + Y
Sbjct: 818 MDRPPRSPKEPLISGWLFFRYMAIGGY 844
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 239 bits (610), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 181/567 (31%), Positives = 268/567 (47%), Gaps = 64/567 (11%)
Query: 261 VDGAIKILXXXXXXXXXXXPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTI 320
+ GAI PEGLP +T LA R+M A+VR L + ET+G + I
Sbjct: 289 IRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVI 348
Query: 321 CSDKTGTLTLNQMTVVEAYV----------------GGRKMNPTDSNSQLSPMVTSLLVE 364
CSDKTGTLT NQM+V + ++ G P + + S +
Sbjct: 349 CSDKTGTLTTNQMSVCKMFIIDKVDGDFCSLNEFSITGSTYAPEGEVLKNDKPIRSGQFD 408
Query: 365 GIAQNTT-------GSVYLPPNGGEAEVSGSPTEKAILQWGMKLGMNFEAVRSECSVLHV 417
G+ + T S+ G E G TE A+ K+ + VR+ V
Sbjct: 409 GLVELATICALCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERA 468
Query: 418 FPFNSL--------------KKRGGVAVQLPNSEV-------HIHWKGAAEIVLDSCTGY 456
NS+ + R ++V ++ + KGA E V+D C Y
Sbjct: 469 NACNSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCN-Y 527
Query: 457 IDTDDRLVQMD---EDKLLTFKKAIEDMASSSLRCVAIAYRTYERERIPDEEEL-----S 508
+ V M ++K+L+ K +LRC+A+A R+ P EE+ S
Sbjct: 528 VRVGTTRVPMTGPVKEKILSVIKEW-GTGRDTLRCLALA----TRDTPPKREEMVLDDSS 582
Query: 509 RWALPEDDLVLLAIVGIKDPCRPSVKDAIRLCRIAGVKVRMVTGDNIQTARAIALECGIL 568
R+ E DL + +VG+ DP R V +I+LCR AG++V M+TGDN TA AI GI
Sbjct: 583 RFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIF 642
Query: 569 TSEADATEPNIIEGKSFRALSETQREEIAGEDFGMICVMGRSSPSDKLLLVQALRKRGDV 628
E + G+ F L ++ E C R PS K +V+ L+ ++
Sbjct: 643 -GENEEVADRAYTGREFDDLPLAEQREACRR----ACCFARVEPSHKSKIVEYLQSYDEI 697
Query: 629 VAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYAN 688
A+TGDG NDAPAL +A+IG+AMG GT VAK +S++++ DDNF+++V V GR++Y N
Sbjct: 698 TAMTGDGVNDAPALKKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNN 756
Query: 689 IQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHL 748
+++FI++ ++ NV +V F+ A L VQLLWVNL+ D L A AL PP +
Sbjct: 757 MKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDI 816
Query: 749 MQRSPVGRREPLITNIMWRNLLIQASY 775
M R P +EPLI+ ++ + Y
Sbjct: 817 MDRPPRSPKEPLISGWLFFRYMAIGGY 843
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 237 bits (604), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 180/566 (31%), Positives = 268/566 (47%), Gaps = 63/566 (11%)
Query: 261 VDGAIKILXXXXXXXXXXXPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTI 320
+ GAI PEGLP +T LA R+M A+VR L + ET+G + I
Sbjct: 289 IRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVI 348
Query: 321 CSDKTGTLTLNQMTVVEAY----------------VGGRKMNPTDSNSQLSPMVTSLLVE 364
CSDKTGTLT NQM+V + + V G P + V S +
Sbjct: 349 CSDKTGTLTTNQMSVCKMFIIDRIDGDLCLLNEFSVTGSTYAPEGEVLKNDKPVRSGQYD 408
Query: 365 GIAQNTT-------GSVYLPPNGGEAEVSGSPTEKAILQWGMKLGMNFEAVRSECSVLHV 417
G+ + T S+ G E G TE A+ K+ + VR+ V
Sbjct: 409 GLVELATICALCNDSSLDFNETKGIYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERA 468
Query: 418 FPFNSL--------------KKRGGVAVQLPNSEVH------IHWKGAAEIVLDSCTGYI 457
NS+ + R ++V ++ + KGA E V+D C Y+
Sbjct: 469 NACNSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSRAAVGNKMFVKGAPEGVIDRCN-YV 527
Query: 458 DTDDRLVQMD---EDKLLTFKKAIEDMASSSLRCVAIAYRTYERERIPDEEEL-----SR 509
V M ++K+L+ K +LRC+A+A R+ P EE+ ++
Sbjct: 528 RVGTTRVPMTGPVKEKILSVIKEW-GTGRDTLRCLALA----TRDTPPKREEMVLDDSTK 582
Query: 510 WALPEDDLVLLAIVGIKDPCRPSVKDAIRLCRIAGVKVRMVTGDNIQTARAIALECGILT 569
+ E DL + +VG+ DP R V +I+LCR AG++V M+TGDN TA AI GI
Sbjct: 583 FMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFG 642
Query: 570 SEADATEPNIIEGKSFRALSETQREEIAGEDFGMICVMGRSSPSDKLLLVQALRKRGDVV 629
D + G+ F L ++ E C R P+ K +V+ L+ ++
Sbjct: 643 ENEDVAD-RAYTGREFDDLPLAEQREACRR----ACCFARVEPTHKSKIVEYLQSFDEIT 697
Query: 630 AVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANI 689
A+TGDG NDAPAL +A+IG+AMG GT VAK +S++++ DDNF+++V V GR++Y N+
Sbjct: 698 AMTGDGVNDAPALKKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNM 756
Query: 690 QKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLM 749
++FI++ ++ NV +V F+ A L VQLLWVNL+ D L A AL PP +M
Sbjct: 757 KQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIM 816
Query: 750 QRSPVGRREPLITNIMWRNLLIQASY 775
R P +EPLI+ ++ + Y
Sbjct: 817 DRPPRTPKEPLISGWLFFRYMAIGGY 842
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 236 bits (601), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 180/567 (31%), Positives = 267/567 (47%), Gaps = 64/567 (11%)
Query: 261 VDGAIKILXXXXXXXXXXXPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTI 320
+ GAI PEGLP +T LA R+M A+VR L + ET+G + I
Sbjct: 289 IRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVI 348
Query: 321 CSDKTGTLTLNQMTVVEAYV----------------GGRKMNPTDSNSQLSPMVTSLLVE 364
CS KTGTLT NQM+V + ++ G P + + S +
Sbjct: 349 CSXKTGTLTTNQMSVCKMFIIDKVDGDFCSLNEFSITGSTYAPEGEVLKNDKPIRSGQFD 408
Query: 365 GIAQNTT-------GSVYLPPNGGEAEVSGSPTEKAILQWGMKLGMNFEAVRSECSVLHV 417
G+ + T S+ G E G TE A+ K+ + VR+ V
Sbjct: 409 GLVELATICALCNDSSLDFNETKGVYEKVGEATETALTTLVEKMNVFNTEVRNLSKVERA 468
Query: 418 FPFNSL--------------KKRGGVAVQLPNSEV-------HIHWKGAAEIVLDSCTGY 456
NS+ + R ++V ++ + KGA E V+D C Y
Sbjct: 469 NACNSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCN-Y 527
Query: 457 IDTDDRLVQMD---EDKLLTFKKAIEDMASSSLRCVAIAYRTYERERIPDEEEL-----S 508
+ V M ++K+L+ K +LRC+A+A R+ P EE+ S
Sbjct: 528 VRVGTTRVPMTGPVKEKILSVIKEW-GTGRDTLRCLALA----TRDTPPKREEMVLDDSS 582
Query: 509 RWALPEDDLVLLAIVGIKDPCRPSVKDAIRLCRIAGVKVRMVTGDNIQTARAIALECGIL 568
R+ E DL + +VG+ DP R V +I+LCR AG++V M+TGDN TA AI GI
Sbjct: 583 RFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIF 642
Query: 569 TSEADATEPNIIEGKSFRALSETQREEIAGEDFGMICVMGRSSPSDKLLLVQALRKRGDV 628
E + G+ F L ++ E C R PS K +V+ L+ ++
Sbjct: 643 -GENEEVADRAYTGREFDDLPLAEQREACRR----ACCFARVEPSHKSKIVEYLQSYDEI 697
Query: 629 VAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYAN 688
A+TGDG NDAPAL +A+IG+AMG GT VAK +S++++ DDNF+++V V GR++Y N
Sbjct: 698 TAMTGDGVNDAPALKKAEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNN 756
Query: 689 IQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHL 748
+++FI++ ++ NV +V F+ A L VQLLWVNL+ D L A AL PP +
Sbjct: 757 MKQFIRYLISSNVGEVVCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDI 816
Query: 749 MQRSPVGRREPLITNIMWRNLLIQASY 775
M R P +EPLI+ ++ + Y
Sbjct: 817 MDRPPRSPKEPLISGWLFFRYMAIGGY 843
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 236 bits (601), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 167/537 (31%), Positives = 278/537 (51%), Gaps = 39/537 (7%)
Query: 280 PEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTVVEAY 339
PEGL VT+ L + ++M LV+ L A ET+GS +TICS KTGTLT N+MTV +
Sbjct: 302 PEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSXKTGTLTQNRMTVAHMW 361
Query: 340 VGGR--KMNPTDSNSQLSPMVTS---LLVEGIAQNTTGSVYLPPNGG----EAEVSGSPT 390
+ + + T++ S +S TS L + IA +V+ + V+G +
Sbjct: 362 SDNQIHEADTTENQSGVSFDKTSATWLALSRIAGLCNRAVFQANQENLPILKRAVAGDAS 421
Query: 391 EKAILQWGMKLGMNFEAVRSECSVLHVFPFNSLKKRGGVAVQLPNSEVHIH---WKGAAE 447
E A+L+ + + +R + + PFNS K + PN+ H KGA E
Sbjct: 422 ESALLKCIELCCGSVKEMRERYTKIVEIPFNSTNKYQLSIHKNPNTAEPRHLLVMKGAPE 481
Query: 448 IVLDSCTGYIDTDDRLVQMDEDKLLTFKKAIEDMASSSLRCVAIAYRTYERERIPD--EE 505
+LD C+ I + +DE+ F+ A ++ R + + E+ P+ +
Sbjct: 482 RILDRCSS-ILIHGKEQPLDEELKDAFQNAYLELGGLGERVLGFCHLFLPDEQFPEGFQF 540
Query: 506 ELSRWALPEDDLVLLAIVGIKDPCRPSVKDAIRLCRIAGVKVRMVTGDNIQTARAIALEC 565
+ P D+L + ++ + DP R +V DA+ CR AG+KV MVTGD+ TA+AIA
Sbjct: 541 DTDDVNFPLDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGV 600
Query: 566 GILTSEADATE-------------------PNIIEGKSFRALSETQREEIAGEDFGMICV 606
GI++ + E ++ G + ++ Q ++I + V
Sbjct: 601 GIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDMTSEQLDDIL--KYHTEIV 658
Query: 607 MGRSSPSDKLLLVQALRKRGDVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDII 666
R+SP KL++V+ +++G +VAVTGDG ND+PA +ADIG+AMGI G++V+K+++D+I
Sbjct: 659 FARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPASKKADIGVAMGIAGSDVSKQAADMI 718
Query: 667 ILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNAVQLLW 726
+LDDNFAS+V V GR ++ N++K I + LT N+ + + +++ +PL V +L
Sbjct: 719 LLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANIPLPLGTVTILC 778
Query: 727 VNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVSVLLVL 783
++L D + A++LA E +M+R P R P ++ L+ A Q+ ++ L
Sbjct: 779 IDLGTDMVPAISLAYEQAESDIMKRQP---RNPKTDKLVNEQLISMAYGQIGMIQAL 832
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 226 bits (577), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 169/545 (31%), Positives = 272/545 (49%), Gaps = 55/545 (10%)
Query: 280 PEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTVVEAY 339
PEGL VT+ L + ++M LV+ L A ET+GS +TICSDKTGTLT N+MTV +
Sbjct: 338 PEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMW 397
Query: 340 V-------------GGRKMNPTDSNSQLSPMVTSLLVEGIAQNTTGSVYLPPNGGEAEVS 386
G + T + + +L + Q +V + + V+
Sbjct: 398 FDNQIHEADTTENQSGAAFDKTSATWSALSRIAALCNRAVFQAGQDNVPIL----KRSVA 453
Query: 387 GSPTEKAILQWGMKLGMNFEAVRSECSVLHVFPFNSLKK-RGGVAVQLPNSEVH--IHWK 443
G +E A+L+ + + +R + PFNS K + + +SE + K
Sbjct: 454 GDASESALLKCIELCCGSVQGMRDRNPKIVEIPFNSTNKYQLSIHENEKSSESRYLLVMK 513
Query: 444 GAAEIVLDSCTGYIDTDDRLVQMDEDKLLTFKKAIEDMASSSLRCVAIAYRTYERERIP- 502
GA E +LD C+ I + + ED F+ A ++ R + + ++
Sbjct: 514 GAPERILDRCS-TILLNGAEEPLKEDMKEAFQNAYLELGGLGERVLGFCHFALPEDKYNE 572
Query: 503 ----DEEELSRWALPEDDLVLLAIVGIKDPCRPSVKDAIRLCRIAGVKVRMVTGDNIQTA 558
D +E + P DL + ++ + DP R +V DA+ CR AG+KV MVTGD+ TA
Sbjct: 573 GYPFDADEPN---FPTTDLCFVGLMAMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITA 629
Query: 559 RAIALECGILTSEADATEPNI--------------------IEGKSFRALSETQREEIAG 598
+AIA GI+ SE + T +I + G + LS ++I
Sbjct: 630 KAIAKGVGII-SEGNETIEDIAARLNIPIGQVNPRDAKACVVHGSDLKDLSTEVLDDIL- 687
Query: 599 EDFGMICVMGRSSPSDKLLLVQALRKRGDVVAVTGDGTNDAPALHEADIGLAMGIQGTEV 658
+ V R+SP KL++V+ +++G +VAVTGDG ND+PAL +ADIG+AMGI G++V
Sbjct: 688 -HYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGISGSDV 746
Query: 659 AKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVP 718
+K+++D+I+LDDNFAS+V V GR ++ N++K I + LT N+ + V + + +P
Sbjct: 747 SKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLVFIIGNVPLP 806
Query: 719 LNAVQLLWVNLIMDTLGALALATEPPTDHLMQRSPVGRREPLITNIMWRNLLIQASYQVS 778
L V +L ++L D + A++LA E +M+R P R P ++ L+ A Q+
Sbjct: 807 LGTVTILCIDLGTDMVPAISLAYEQAESDIMKRQP---RNPKTDKLVNERLISMAYGQIG 863
Query: 779 VLLVL 783
++ L
Sbjct: 864 MIQAL 868
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 215 bits (547), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 163/525 (31%), Positives = 255/525 (48%), Gaps = 52/525 (9%)
Query: 280 PEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTVVEAY 339
PEGL VT+ L+ + +++ + +V+ L A ET+GS + ICSDKTGTLT N+MTV +
Sbjct: 343 PEGLLATVTVCLSLTAKRLASKNCVVKNLEAVETLGSTSVICSDKTGTLTQNRMTVSHLW 402
Query: 340 V-------------GGRKMNPTDSNSQLSPMVTSLLVEGIAQNTTGSVYLPPNGGEAEVS 386
G+ + + + V +L ++ +V +P + V
Sbjct: 403 FDNHIHSADTTEDQSGQTFDQSSETWRALCRVLTLCNRAAFKSGQDAVPVP----KRIVI 458
Query: 387 GSPTEKAILQWG-MKLGMNFEAVRSECSVLHVFPFNSLKK--RGGVAVQLPNSEVHIH-W 442
G +E A+L++ + LG N R + PFNS K ++ P H+
Sbjct: 459 GDASETALLKFSELTLG-NAMGYRERFPKVCEIPFNSTNKFQLSIHTLEDPRDPRHVLVM 517
Query: 443 KGAAEIVLDSCTGYIDTDDRLVQMDEDKLLTFKKAIEDMASSSLRCVAIAYRTYERERIP 502
KGA E VL+ C+ + L +DE F+ A + R + + P
Sbjct: 518 KGAPERVLERCSSILIKGQEL-PLDEQWREAFQTAYLSLGGLGERVLGFCQLYLSEKDYP 576
Query: 503 DEEELSRWAL--PEDDLVLLAIVGIKDPCRPSVKDAIRLCRIAGVKVRMVTGDNIQTARA 560
A+ P L +V + DP R +V DA+ CR AG++V MVTGD+ TA+A
Sbjct: 577 PGYAFDVEAMNFPTSGLSFAGLVSMIDPPRATVPDAVLKCRTAGIRVIMVTGDHPITAKA 636
Query: 561 IALECGILTSEADATE-------------------PNIIEGKSFRALSETQREEIAGEDF 601
IA GI++ ++ E +I G + + ++ E
Sbjct: 637 IAASVGIISEGSETVEDIAARLRVPVDQVNRKDARACVINGMQLKDMDPSELVEALRTHP 696
Query: 602 GMICVMGRSSPSDKLLLVQALRKRGDVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKE 661
M V R+SP KL++V++ ++ G +VAVTGDG ND+PAL +ADIG+AMGI G++ AK
Sbjct: 697 EM--VFARTSPQQKLVIVESCQRLGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDAAKN 754
Query: 662 SSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINFVAAVSSGDVPLNA 721
++D+I+LDDNFAS+V V GR ++ N++K I + LT N+ L + S +PL
Sbjct: 755 AADMILLDDNFASIVTGVEQGRLIFDNLKKSIAYTLTKNIPELTPYLIYITVSVPLPLGC 814
Query: 722 VQLLWVNLIMDTLGALALATEPPTD---HLMQRSPVGRR---EPL 760
+ +L++ L D +++LA E HL R+P R EPL
Sbjct: 815 ITILFIELCTDIFPSVSLAYEKAESDIMHLRPRNPKRDRLVNEPL 859
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 125 bits (314), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 109/439 (24%), Positives = 203/439 (46%), Gaps = 60/439 (13%)
Query: 265 IKILXXXXXXXXXXXPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDK 324
++IL P GLP VT T+A + KA+V++LSA E++ +CSDK
Sbjct: 320 VQILEFTLAITIIGVPVGLPAVVTTTMAVGAAYLAKKKAIVQKLSAIESLAGVEILCSDK 379
Query: 325 TGTLTLNQMTVVEAY-VGGRKMNPTDSNSQLSPMVTSLLVEGIAQNTTGSVYLPPNGGEA 383
TGTLT N++++ + Y V G ++P D M+T+ L + ++
Sbjct: 380 TGTLTKNKLSLHDPYTVAG--VDPEDL------MLTACLAASRKKKGIDAI--------- 422
Query: 384 EVSGSPTEKAILQWGMKLGMNFEAVRSECSVLHVFPFNSLKKRGGVAVQLPNSEVHIHWK 443
+KA L+ +K ++V S+ VL PF+ + K+ V+ P E K
Sbjct: 423 -------DKAFLK-SLKYYPRAKSVLSKYKVLQFHPFDPVSKKVVAVVESPQGERITCVK 474
Query: 444 GAAEIVLDSCTGYIDTDDRLVQMDEDKLLTFKKAIEDMASSSLRCVAIAYRTYERERIPD 503
GA VL + +D + + D+ +K + + A+ R + +A + E
Sbjct: 475 GAPLFVLKTV-----EEDHPIPEEVDQ--AYKNKVAEFATRGFRSLGVARKRGE------ 521
Query: 504 EEELSRWALPEDDLVLLAIVGIKDPCRPSVKDAIRLCRIAGVKVRMVTGDNIQTARAIAL 563
W +L I+ DP R + + G+ ++M+TGD + AR +
Sbjct: 522 ----GSWE-------ILGIMPCMDPPRHDTYKTVCEAKTLGLSIKMLTGDAVGIARETSR 570
Query: 564 ECGILTSEADATEPNIIEGKSFRALSETQREEIAGEDFGMICVMGRSSPSDKLLLVQALR 623
+ G+ T+ +A + G SE A + F + P K +V+ L+
Sbjct: 571 QLGLGTNIYNAERLGLGGGGDMPG-SEVYDFVEAADGFAEVF------PQHKYNVVEILQ 623
Query: 624 KRGDVVAVTGDGTNDAPALHEADIGLAMGIQG-TEVAKESSDIIILDDNFASVVKVVRWG 682
+RG +VA+TGDG NDAP+L +AD G+A ++G ++ A+ ++DI+ L +++ ++
Sbjct: 624 QRGYLVAMTGDGVNDAPSLKKADTGIA--VEGSSDAARSAADIVFLAPGLGAIIDALKTS 681
Query: 683 RSVYANIQKFIQFQLTVNV 701
R ++ + ++ +++ +++
Sbjct: 682 RQIFHRMYAYVVYRIALSI 700
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 119 bits (298), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 106/453 (23%), Positives = 206/453 (45%), Gaps = 54/453 (11%)
Query: 280 PEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTVVEAY 339
P +P +++T+A ++ A+ +R++A E M +CSDKTGTLTLN+++V
Sbjct: 286 PIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSV---- 341
Query: 340 VGGRKMNPTDSNSQLSPMVTSLLVEGIAQNTTGSVYLPPNGGEAEVSGSPTEKAILQWGM 399
D N + + +G+ ++ V L A S + AI +
Sbjct: 342 ---------DKN------LVEVFCKGVEKD---QVLL----FAAMASRVENQDAIDAAMV 379
Query: 400 KLGMNFEAVRSECSVLHVFPFNSLKKRGGVAVQLPNSEVHIHWKGAAEIVLDSCTGYIDT 459
+ + + R+ +H PFN + KR + + H KGA E +L+ D
Sbjct: 380 GMLADPKEARAGIREVHFLPFNPVDKRTALTYIDGSGNWHRVSKGAPEQILELAKASNDL 439
Query: 460 DDRLVQMDEDKLLTFKKAIEDMASSSLRCVAIAYRTYERERIPDEEELSRWALPEDDLVL 519
+++ + I+ A LR +A+A R+ +P++ + S P
Sbjct: 440 SKKVLSI-----------IDKYAERGLRSLAVA-----RQVVPEKTKES----PGAPWEF 479
Query: 520 LAIVGIKDPCRPSVKDAIRLCRIAGVKVRMVTGDNIQTARAIALECGILTSEADATEPNI 579
+ ++ + DP R + IR GV V+M+TGD + + G+ T+ ++ +
Sbjct: 480 VGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSA--L 537
Query: 580 IEGKSFRALSETQREEIAGEDFGMICVMGRSSPSDKLLLVQALRKRGDVVAVTGDGTNDA 639
+ L+ EE+ + G V P K +V+ L++R +V +TGDG NDA
Sbjct: 538 LGTHKDANLASIPVEELIEKADGFAGVF----PEHKYEIVKKLQERKHIVGMTGDGVNDA 593
Query: 640 PALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTV 699
PAL +ADIG+A+ T+ A+ +SDI++ + + ++ V R+++ ++ + + +++
Sbjct: 594 PALKKADIGIAVA-DATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSI 652
Query: 700 NVAALVINFVAAVSSGDVPLNAVQLLWVNLIMD 732
+ +V F+ + +A +L + ++ D
Sbjct: 653 TI-RIVFGFMLIALIWEFDFSAFMVLIIAILND 684
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 90/182 (49%), Gaps = 37/182 (20%)
Query: 520 LAIVGIKDPCRPSVKDAIRLCRIAGVKVRMVTGDNIQTARAIALECGILTSEADATEPNI 579
+A++ ++DP + S + I + +G+++ M+TGD+ +TA A+A GI
Sbjct: 546 VALLVVEDPIKSSTPETILELQQSGIEIVMLTGDSKRTAEAVAGTLGIKK---------- 595
Query: 580 IEGKSFRALSETQREEIAGEDFGMICVMGRSSPSDKLLLVQALRKRGDVVAVTGDGTNDA 639
V+ P DK +V L+ +G +VA+ GDG NDA
Sbjct: 596 --------------------------VVAEIMPEDKSRIVSELKDKGLIVAMAGDGVNDA 629
Query: 640 PALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTV 699
PAL +ADIG+AMG GT+VA ES+ + +L + + K R S +NI++ + F
Sbjct: 630 PALAKADIGIAMG-TGTDVAIESAGVTLLHGDLRGIAKARRLSESTMSNIRQNLFFAFIY 688
Query: 700 NV 701
NV
Sbjct: 689 NV 690
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 280 PEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLT 329
P L LA +++ + K L++ A E M T+ DKTGTLT
Sbjct: 383 PCALGLATPMSIMVGVGKGAQSGVLIKNAEALERMEKVNTLVVDKTGTLT 432
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 88/180 (48%), Gaps = 38/180 (21%)
Query: 522 IVGIKDPCRPSVKDAIRLCRIAGVKVRMVTGDNIQTARAIALECGILTSEADATEPNIIE 581
I+ + D + S K A++ + G+KV M+TGDN ++A AI+ E
Sbjct: 451 IIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRE----------------- 493
Query: 582 GKSFRALSETQREEIAGEDFGMICVMGRSSPSDKLLLVQALRKRGDVVAVTGDGTNDAPA 641
+ V+ P K V+ L+ + +VVA GDG NDAPA
Sbjct: 494 -------------------LNLDLVIAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPA 533
Query: 642 LHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNV 701
L +AD+G+A+G G++VA ES DI+++ D+ VV ++ R + I++ I + L NV
Sbjct: 534 LAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFWALIYNV 592
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 88/180 (48%), Gaps = 38/180 (21%)
Query: 522 IVGIKDPCRPSVKDAIRLCRIAGVKVRMVTGDNIQTARAIALECGILTSEADATEPNIIE 581
I+ + D + S K A++ + G+KV M+TGDN ++A AI+ E
Sbjct: 529 IIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRE----------------- 571
Query: 582 GKSFRALSETQREEIAGEDFGMICVMGRSSPSDKLLLVQALRKRGDVVAVTGDGTNDAPA 641
+ V+ P K V+ L+ + +VVA GDG NDAPA
Sbjct: 572 -------------------LNLDLVIAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPA 611
Query: 642 LHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNV 701
L +AD+G+A+G G++VA ES DI+++ D+ VV ++ R + I++ I + L NV
Sbjct: 612 LAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFWALIYNV 670
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 82/169 (48%), Gaps = 38/169 (22%)
Query: 522 IVGIKDPCRPSVKDAIRLCRIAGVKVRMVTGDNIQTARAIALECGILTSEADATEPNIIE 581
I+ + D + S K A++ + G+KV M+TGDN ++A AI+ E
Sbjct: 157 IIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRE----------------- 199
Query: 582 GKSFRALSETQREEIAGEDFGMICVMGRSSPSDKLLLVQALRKRGDVVAVTGDGTNDAPA 641
+ V+ P K V+ L+ + +VVA GDG NDAPA
Sbjct: 200 -------------------LNLDLVIAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPA 239
Query: 642 LHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQ 690
L +AD+G+A+G G++VA ES DI+++ D+ VV ++ R + I+
Sbjct: 240 LAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 287
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 82/169 (48%), Gaps = 38/169 (22%)
Query: 522 IVGIKDPCRPSVKDAIRLCRIAGVKVRMVTGDNIQTARAIALECGILTSEADATEPNIIE 581
I+ + D + S K A++ + G+KV M+TGDN ++A AI+ E
Sbjct: 157 IIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRE----------------- 199
Query: 582 GKSFRALSETQREEIAGEDFGMICVMGRSSPSDKLLLVQALRKRGDVVAVTGDGTNDAPA 641
+ V+ P K V+ L+ + +VVA GDG NDAPA
Sbjct: 200 -------------------LNLDLVIAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPA 239
Query: 642 LHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQ 690
L +AD+G+A+G G++VA ES DI+++ D+ VV ++ R + I+
Sbjct: 240 LAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 287
>pdb|4AQR|D Chain D, Crystal Structure Of A Calmodulin In Complex With The
Regulatory Domain Of A Plasma-Membrane Ca2+-Atpase
Length = 57
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/54 (64%), Positives = 44/54 (81%)
Query: 41 APIVRLKRWRQAALVLNASRRFRYTLDLKKEEEKLQTLRKIRAHAQAIRAAVLF 94
+ I RL++WR+AALVLNASRRFRYTLDLKKE+E + +KIR+HA A+ AA F
Sbjct: 1 SSIERLQQWRKAALVLNASRRFRYTLDLKKEQETREMRQKIRSHAHALLAANRF 54
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 78/162 (48%), Gaps = 38/162 (23%)
Query: 522 IVGIKDPCRPSVKDAIRLCRIAGVKVRMVTGDNIQTARAIALECGILTSEADATEPNIIE 581
I+ + D + S K A++ + G+KV +TGDN ++A AI+ E
Sbjct: 137 IIAVSDTLKESAKPAVQELKRXGIKVGXITGDNWRSAEAISRE----------------- 179
Query: 582 GKSFRALSETQREEIAGEDFGMICVMGRSSPSDKLLLVQALRKRGDVVAVTGDGTNDAPA 641
+ V+ P K V+ L+ + +VVA GDG NDAPA
Sbjct: 180 -------------------LNLDLVIAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPA 219
Query: 642 LHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGR 683
L +AD+G+A+G G++VA ES DI+++ D+ VV ++ R
Sbjct: 220 LAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSR 260
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 83/170 (48%), Gaps = 38/170 (22%)
Query: 521 AIVGIKDPCRPSVKDAIRLCRIAGVKVRMVTGDNIQTARAIALECGILTSEADATEPNII 580
++ + D RP ++AI + G+K M+TGDN A+ +A E G+
Sbjct: 137 GVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGL------------- 183
Query: 581 EGKSFRALSETQREEIAGEDFGMICVMGRSSPSDKLLLVQALRKRGDVVAVTGDGTNDAP 640
+D+ P +K V+ ++++ V A+ GDG NDAP
Sbjct: 184 ------------------DDY-----FAEVLPHEKAEKVKEVQQKY-VTAMVGDGVNDAP 219
Query: 641 ALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQ 690
AL +AD+G+A+G GT+VA E++DI+++ ++ V +V R Y+ ++
Sbjct: 220 ALAQADVGIAIG-AGTDVAVETADIVLVRNDPRDVAAIVELSRKTYSKLE 268
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 81/170 (47%), Gaps = 38/170 (22%)
Query: 521 AIVGIKDPCRPSVKDAIRLCRIAGVKVRMVTGDNIQTARAIALECGILTSEADATEPNII 580
++ + D RP ++AI + G+K M+TGDN A+ +A E G+
Sbjct: 137 GVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGL------------- 183
Query: 581 EGKSFRALSETQREEIAGEDFGMICVMGRSSPSDKLLLVQALRKRGDVVAVTGDGTNDAP 640
+D+ P +K V+ ++++ V A+ GDG NDAP
Sbjct: 184 ------------------DDY-----FAEVLPHEKAEKVKEVQQK-YVTAMVGDGVNDAP 219
Query: 641 ALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQ 690
AL +AD+G+A+G GT+VA E++DI+++ ++ V +V R Y+
Sbjct: 220 ALAQADVGIAIG-AGTDVAVETADIVLVRNDPRDVAAIVELSRKTYSKFH 268
>pdb|2VOY|I Chain I, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 128
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 70/156 (44%), Gaps = 50/156 (32%)
Query: 525 IKDPCRPSVKDAIRLCRIAGVKVRMVTGDNIQTARAIALECGILTSEADATEPNIIEGKS 584
+K+ +P+V++ R G+KV +TGDN ++A AI+ E
Sbjct: 23 LKESAKPAVQELKR----XGIKVGXITGDNWRSAEAISRE-------------------- 58
Query: 585 FRALSETQREEIAGEDFGMICVMGRSSPSDKLLLVQALRKRGDVVAVTGDGTNDAPALHE 644
+ V+ P K V+ L+ + +VVA GDG NDAPAL +
Sbjct: 59 ----------------LNLDLVIAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPALAQ 101
Query: 645 ADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVR 680
AD+G+A+G S DI+++ D+ VV ++
Sbjct: 102 ADLGIAVG---------SGDIVLIRDDLRDVVAAIQ 128
>pdb|2IYE|A Chain A, Structure Of Catalytic Cpx-atpase Domain Copb-b
pdb|2IYE|C Chain C, Structure Of Catalytic Cpx-atpase Domain Copb-b
Length = 263
Score = 47.0 bits (110), Expect = 5e-05, Method: Composition-based stats.
Identities = 41/161 (25%), Positives = 78/161 (48%), Gaps = 37/161 (22%)
Query: 520 LAIVGIKDPCRPSVKDAIRLCRIAGVKVRMVTGDNIQTARAIALECGILTSEADATEPNI 579
+A I D RP++KD + + G+K+ +++GD + ++ E NI
Sbjct: 128 IASFNISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELS------------KELNI 175
Query: 580 IEGKSFRALSETQREEIAGEDFGMICVMGRSSPSDKLLLVQALRKRGDVVAVTGDGTNDA 639
E S SP DK+ +++ L++ G+ V + GDG NDA
Sbjct: 176 QEYYS------------------------NLSPEDKVRIIEKLKQNGNKVLMIGDGVNDA 211
Query: 640 PALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVR 680
AL AD+ +AMG G +++K +DII++ ++ +++ +++
Sbjct: 212 AALALADVSVAMG-NGVDISKNVADIILVSNDIGTLLGLIK 251
>pdb|2YJ3|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 47.0 bits (110), Expect = 5e-05, Method: Composition-based stats.
Identities = 41/161 (25%), Positives = 78/161 (48%), Gaps = 37/161 (22%)
Query: 520 LAIVGIKDPCRPSVKDAIRLCRIAGVKVRMVTGDNIQTARAIALECGILTSEADATEPNI 579
+A I D RP++KD + + G+K+ +++GD + ++ E NI
Sbjct: 128 IASFNISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELS------------KELNI 175
Query: 580 IEGKSFRALSETQREEIAGEDFGMICVMGRSSPSDKLLLVQALRKRGDVVAVTGDGTNDA 639
E S SP DK+ +++ L++ G+ V + GDG NDA
Sbjct: 176 QEYYS------------------------NLSPEDKVRIIEKLKQNGNKVLMIGDGVNDA 211
Query: 640 PALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVR 680
AL AD+ +AMG G +++K +DII++ ++ +++ +++
Sbjct: 212 AALALADVSVAMG-NGVDISKNVADIILVSNDIGTLLGLIK 251
>pdb|2YJ4|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ4|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|A Chain A, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|B Chain B, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 47.0 bits (110), Expect = 5e-05, Method: Composition-based stats.
Identities = 41/161 (25%), Positives = 78/161 (48%), Gaps = 37/161 (22%)
Query: 520 LAIVGIKDPCRPSVKDAIRLCRIAGVKVRMVTGDNIQTARAIALECGILTSEADATEPNI 579
+A I D RP++KD + + G+K+ +++GD + ++ E NI
Sbjct: 128 IASFNISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELS------------KELNI 175
Query: 580 IEGKSFRALSETQREEIAGEDFGMICVMGRSSPSDKLLLVQALRKRGDVVAVTGDGTNDA 639
E S SP DK+ +++ L++ G+ V + GDG NDA
Sbjct: 176 QEYYS------------------------NLSPEDKVRIIEKLKQNGNKVLMIGDGVNDA 211
Query: 640 PALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVR 680
AL AD+ +AMG G +++K +DII++ ++ +++ +++
Sbjct: 212 AALALADVSVAMG-NGVDISKNVADIILVSNDIGTLLGLIK 251
>pdb|3R4C|A Chain A, Divergence Of Structure And Function Among Phosphatases Of
The Haloalkanoate (Had) Enzyme Superfamily: Analysis Of
Bt1666 From Bacteroides Thetaiotaomicron
Length = 268
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 24/52 (46%)
Query: 601 FGMICVMGRSSPSDKLLLVQALRKRGDVVAVTGDGTNDAPALHEADIGLAMG 652
F + V G S + L R + + GDG ND P L A IG+AMG
Sbjct: 185 FADVNVAGTSKATGLSLFADYYRVKVSEIMACGDGGNDIPMLKAAGIGVAMG 236
>pdb|1NF2|A Chain A, X-Ray Crystal Structure Of Tm0651 From Thermotoga Maritima
pdb|1NF2|B Chain B, X-Ray Crystal Structure Of Tm0651 From Thermotoga Maritima
pdb|1NF2|C Chain C, X-Ray Crystal Structure Of Tm0651 From Thermotoga Maritima
Length = 268
Score = 32.7 bits (73), Expect = 0.81, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 14/99 (14%)
Query: 594 EEIAGEDFGMICVMGRSSPS---------DKLLLVQALRKR----GDVVAVTGDGTNDAP 640
+EI E F + + +S P+ DK ++ LR+R + + V GD ND
Sbjct: 161 KEILSERFKDVVKVFKSFPTYLEIVPKNVDKGKALRFLRERMNWKKEEIVVFGDNENDLF 220
Query: 641 ALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVV 679
EA + +AM E KE+SDI+ L +N + V V+
Sbjct: 221 MFEEAGLRVAME-NAIEKVKEASDIVTLTNNDSGVSYVL 258
>pdb|2VOY|H Chain H, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 48
Score = 32.7 bits (73), Expect = 0.85, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 21/48 (43%)
Query: 261 VDGAIKILXXXXXXXXXXXPEGLPLAVTLTLAYSMRKMMADKALVRRL 308
+ GAI PEGLP +T LA R+M A+VR L
Sbjct: 1 IRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSL 48
>pdb|4DW8|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Target Efi-900331) From Bacteroides
Thetaiotaomicron With Bound Na Crystal Form I
pdb|4DWO|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Target Efi-900331) From Bacteroides
Thetaiotaomicron With Bound Mg Crystal Form Ii
Length = 279
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 625 RGDVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVR 680
R +V+A+ GDG ND + A +G+AMG E K+++D I L ++ V + +
Sbjct: 213 REEVIAI-GDGYNDLSMIKFAGMGVAMG-NAQEPVKKAADYITLTNDEDGVAEAIE 266
>pdb|4EX6|A Chain A, Crystal Structure Of The Alnumycin P Phosphatase Alnb
pdb|4EX7|A Chain A, Crystal Structure Of The Alnumycin P Phosphatase In
Complex With Free Phosphate
Length = 237
Score = 29.6 bits (65), Expect = 7.5, Method: Composition-based stats.
Identities = 38/153 (24%), Positives = 61/153 (39%), Gaps = 31/153 (20%)
Query: 531 PSVKDAIRLCRIAGVKVRMVTGDNIQTARAIALECGILTSEADATEPNIIEGKSFRALSE 590
P V + + AG ++ M T + ARAIA G+ +
Sbjct: 107 PGVLEGLDRLSAAGFRLAMATSKVEKAARAIAELTGL----------------------D 144
Query: 591 TQREEIAGEDFGMICVMGRSSPSDKLLLVQALRKRGDVVAVTGDGTNDAPALHEAD---I 647
T+ IAG+D G+ P L + + L + V GDG DA A I
Sbjct: 145 TRLTVIAGDD---SVERGKPHPDMALHVARGLGIPPERCVVIGDGVPDAEMGRAAGMTVI 201
Query: 648 GLAMGIQG-TEVAKESSDIIILDDNFASVVKVV 679
G++ G+ G E+ + +D ++ D+F + V V
Sbjct: 202 GVSYGVSGPDELMRAGADTVV--DSFPAAVTAV 232
>pdb|2RAR|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily.
pdb|2RAV|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily
Length = 261
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 633 GDGTNDAPALHEADIGLAMGIQGTEVAKESSDII 666
GDG ND L A IG+AMG Q E K ++D +
Sbjct: 210 GDGGNDISMLRHAAIGVAMG-QAKEDVKAAADYV 242
>pdb|1WKR|A Chain A, Crystal Structure Of Aspartic Proteinase From Irpex
Lacteus
Length = 340
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 39/108 (36%), Gaps = 15/108 (13%)
Query: 401 LGMNFEAVRSECSVLHVFPFNSL--KKRGGVAVQLP---NSEVHIHWK-------GAAEI 448
L ++FE SE S F + K G P S +W G++
Sbjct: 143 LAVSFEPTTSESSTNGELTFGATDSSKYTGSITYTPITSTSPASAYWGINQSIRYGSSTS 202
Query: 449 VLDSCTGYIDTDDRLVQMDEDKLLTFKK---AIEDMASSSLRCVAIAY 493
+L S G +DT L + D +KK A+ D + LR Y
Sbjct: 203 ILSSTAGIVDTGTTLTLIASDAFAKYKKATGAVADNNTGLLRLTTAQY 250
>pdb|1YMQ|A Chain A, Had Superfamily Phosphotransferase Substrate
Diversification: Structure And Function Analysis Of The
Had Subclass Iib Sugar Phosphatase Bt4131
pdb|2RB5|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily.
pdb|2RBK|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily
Length = 261
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 633 GDGTNDAPALHEADIGLAMGIQGTEVAKESSDII 666
GDG ND L A IG+AMG Q E K ++D +
Sbjct: 210 GDGGNDISMLRHAAIGVAMG-QAKEDVKAAADYV 242
>pdb|4A3V|A Chain A, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
pdb|4A3V|C Chain C, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
Length = 496
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 810 FNSFVLCQIFNEFNARKPDEKNIFGGITKNRLFMGIVA--VTLVLQILIIQFLGKFASTT 867
F++ L Q+F E + + DE ++F + K+ L +G A +T L+++ Q+L K+
Sbjct: 288 FSTNCLLQLFAEVSRIEEDEYSLFKTMDKDSLKIGSEAKLITEWLELINPQYLVKYHKDV 347
Query: 868 RLNWKHWIISVVIGFIR 884
N+ H + IG +R
Sbjct: 348 VENYFH-VSGYSIGMLR 363
>pdb|3VLE|A Chain A, Crystal Structure Of Yeast Proteasome Interacting Protein
pdb|3VLE|B Chain B, Crystal Structure Of Yeast Proteasome Interacting Protein
Length = 500
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 810 FNSFVLCQIFNEFNARKPDEKNIFGGITKNRLFMGIVA--VTLVLQILIIQFLGKFASTT 867
F++ L Q+F E + + DE ++F + K+ L +G A +T L+++ Q+L K+
Sbjct: 303 FSTNCLLQLFAEVSRIEEDEYSLFKTMDKDSLKIGSEAKLITEWLELINPQYLVKYHKDV 362
Query: 868 RLNWKHWIISVVIGFIR 884
N+ H + IG +R
Sbjct: 363 VENYFH-VSGYSIGMLR 378
>pdb|4A3T|A Chain A, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3
pdb|4A3T|B Chain B, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3
Length = 485
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 810 FNSFVLCQIFNEFNARKPDEKNIFGGITKNRLFMGIVA--VTLVLQILIIQFLGKFASTT 867
F++ L Q+F E + + DE ++F + K+ L +G A +T L+++ Q+L K+
Sbjct: 288 FSTNCLLQLFAEVSRIEEDEYSLFKTMDKDSLKIGSEAKLITEWLELINPQYLVKYHKDV 347
Query: 868 RLNWKHWIISVVIGFIR 884
N+ H + IG +R
Sbjct: 348 VENYFH-VSGYSIGMLR 363
>pdb|2PT7|A Chain A, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|B Chain B, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|C Chain C, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|D Chain D, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|E Chain E, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
pdb|2PT7|F Chain F, Crystal Structure Of Cag Virb11 (Hp0525) And An Inhibitory
Protein (Hp1451)
Length = 330
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 294 SMRKMMADKALVRRLSACETMGSATTICSDKTGTL-TLNQMTVVEAYVGGRKMNPTDSNS 352
S +M D+ ++ L + E +CS GTL TL+ + EA++ R N + SNS
Sbjct: 235 SCLRMRPDRIILGELRSSEAYDFYNVLCSGHKGTLTTLHAGSSEEAFI--RLANMSSSNS 292
Query: 353 QLSPMVTSLLVEGI 366
+ L+EG
Sbjct: 293 AARNIKFESLIEGF 306
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,062,003
Number of Sequences: 62578
Number of extensions: 944621
Number of successful extensions: 1934
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1849
Number of HSP's gapped (non-prelim): 71
length of query: 892
length of database: 14,973,337
effective HSP length: 107
effective length of query: 785
effective length of database: 8,277,491
effective search space: 6497830435
effective search space used: 6497830435
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)