Query 043307
Match_columns 248
No_of_seqs 152 out of 218
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 03:41:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043307.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043307hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04142 Nuc_sug_transp: Nucle 99.7 3.6E-16 7.8E-21 140.3 13.5 132 108-243 13-153 (244)
2 KOG2234 Predicted UDP-galactos 99.7 4E-16 8.6E-21 146.4 13.6 128 112-243 92-222 (345)
3 KOG2765 Predicted membrane pro 99.5 1.5E-13 3.2E-18 130.4 12.5 131 110-247 157-287 (416)
4 PF06027 DUF914: Eukaryotic pr 99.5 1E-12 2.3E-17 123.4 17.2 168 69-246 39-206 (334)
5 PF08449 UAA: UAA transporter 99.2 4.8E-10 1E-14 102.2 16.6 177 58-246 16-194 (303)
6 TIGR00817 tpt Tpt phosphate/ph 99.1 6.1E-09 1.3E-13 94.2 18.3 152 58-229 17-169 (302)
7 PTZ00343 triose or hexose phos 99.1 1.1E-08 2.3E-13 95.9 19.6 168 43-224 49-217 (350)
8 TIGR00950 2A78 Carboxylate/Ami 99.1 8.5E-09 1.8E-13 90.0 16.1 148 60-230 6-153 (260)
9 PLN00411 nodulin MtN21 family 99.0 4.1E-08 8.8E-13 92.9 18.6 164 53-220 23-208 (358)
10 TIGR00688 rarD rarD protein. T 98.9 5.8E-08 1.2E-12 85.7 15.1 149 56-220 15-165 (256)
11 PRK11272 putative DMT superfam 98.8 4.3E-07 9.4E-12 82.2 19.3 163 39-220 4-169 (292)
12 COG0697 RhaT Permeases of the 98.7 2.4E-06 5.3E-11 74.1 17.9 102 113-220 71-173 (292)
13 PRK15430 putative chlorampheni 98.7 5.9E-07 1.3E-11 81.6 14.7 93 115-220 76-168 (296)
14 PRK11453 O-acetylserine/cystei 98.7 1.7E-06 3.6E-11 78.6 17.6 98 124-231 71-169 (299)
15 TIGR03340 phn_DUF6 phosphonate 98.6 2.5E-06 5.4E-11 76.7 16.4 99 114-220 65-163 (281)
16 PF13536 EmrE: Multidrug resis 98.6 1.9E-07 4.2E-12 73.7 7.5 74 115-189 37-111 (113)
17 PF00892 EamA: EamA-like trans 98.5 9E-07 1.9E-11 67.8 10.3 118 58-182 6-124 (126)
18 TIGR00776 RhaT RhaT L-rhamnose 98.5 7.4E-07 1.6E-11 81.4 11.2 112 109-221 56-172 (290)
19 PRK11689 aromatic amino acid e 98.5 2.6E-06 5.6E-11 77.4 14.3 109 119-231 68-182 (295)
20 PRK10532 threonine and homoser 98.2 9.9E-05 2.2E-09 67.0 16.8 101 116-232 75-175 (293)
21 KOG1443 Predicted integral mem 98.0 4.2E-05 9.2E-10 71.9 10.7 119 118-245 90-210 (349)
22 PLN00411 nodulin MtN21 family 97.9 0.00046 9.9E-09 65.5 15.2 77 112-190 258-334 (358)
23 PRK15051 4-amino-4-deoxy-L-ara 97.9 0.0002 4.2E-09 57.4 10.3 65 120-184 45-109 (111)
24 PRK10532 threonine and homoser 97.8 0.0012 2.5E-08 60.0 15.7 70 117-186 213-283 (293)
25 TIGR00950 2A78 Carboxylate/Ami 97.8 0.00088 1.9E-08 58.5 14.4 116 57-179 142-259 (260)
26 TIGR00776 RhaT RhaT L-rhamnose 97.8 0.00029 6.3E-09 64.4 11.6 121 54-184 163-288 (290)
27 KOG4510 Permease of the drug/m 97.7 1.8E-05 3.8E-10 73.6 2.7 141 29-184 28-169 (346)
28 PF03151 TPT: Triose-phosphate 97.7 0.0012 2.7E-08 53.2 12.7 125 57-181 14-150 (153)
29 KOG3912 Predicted integral mem 97.7 0.00073 1.6E-08 63.4 12.7 104 123-231 98-202 (372)
30 TIGR00803 nst UDP-galactose tr 97.7 0.00016 3.4E-09 62.9 7.5 107 119-232 6-112 (222)
31 PRK11689 aromatic amino acid e 97.6 0.0018 4E-08 58.8 13.2 68 117-184 220-287 (295)
32 KOG1441 Glucose-6-phosphate/ph 97.5 0.00023 5E-09 67.0 7.1 166 40-220 14-182 (316)
33 PRK11272 putative DMT superfam 97.4 0.0053 1.1E-07 55.6 13.6 64 122-185 223-286 (292)
34 KOG4314 Predicted carbohydrate 97.3 0.00029 6.4E-09 63.4 4.8 104 118-232 59-162 (290)
35 PRK15430 putative chlorampheni 97.3 0.006 1.3E-07 55.5 13.5 71 113-183 214-284 (296)
36 COG2962 RarD Predicted permeas 97.3 0.0027 5.9E-08 59.3 11.3 115 108-240 68-183 (293)
37 TIGR03340 phn_DUF6 phosphonate 97.3 0.00074 1.6E-08 60.7 7.0 70 113-182 212-281 (281)
38 PF06800 Sugar_transport: Suga 97.3 0.0028 6E-08 58.6 10.8 113 109-222 42-159 (269)
39 TIGR00817 tpt Tpt phosphate/ph 97.1 0.0051 1.1E-07 55.7 11.0 64 121-184 230-293 (302)
40 PRK10452 multidrug efflux syst 97.0 0.0079 1.7E-07 49.3 10.0 69 119-187 37-106 (120)
41 PRK13499 rhamnose-proton sympo 97.0 0.0099 2.1E-07 56.7 11.9 109 109-217 70-190 (345)
42 PRK11453 O-acetylserine/cystei 96.9 0.044 9.5E-07 49.8 14.7 65 122-186 225-289 (299)
43 COG2510 Predicted membrane pro 96.8 0.0026 5.6E-08 53.4 5.7 111 71-184 29-139 (140)
44 PF05653 Mg_trans_NIPA: Magnes 96.7 0.004 8.6E-08 57.9 6.8 71 120-190 58-128 (300)
45 PRK02971 4-amino-4-deoxy-L-ara 96.2 0.059 1.3E-06 44.4 10.1 67 120-186 56-124 (129)
46 COG0697 RhaT Permeases of the 96.2 0.23 4.9E-06 43.0 14.1 75 111-185 213-288 (292)
47 PRK10650 multidrug efflux syst 96.1 0.055 1.2E-06 43.7 8.9 63 120-182 43-106 (109)
48 PRK11431 multidrug efflux syst 96.0 0.071 1.5E-06 42.7 9.1 65 120-184 37-102 (105)
49 PRK09541 emrE multidrug efflux 96.0 0.089 1.9E-06 42.4 9.7 65 122-186 40-105 (110)
50 COG2076 EmrE Membrane transpor 95.9 0.084 1.8E-06 42.7 9.2 61 125-185 43-104 (106)
51 PTZ00343 triose or hexose phos 95.5 0.099 2.1E-06 49.1 9.4 66 118-183 282-347 (350)
52 TIGR00803 nst UDP-galactose tr 95.1 0.044 9.5E-07 47.6 5.6 125 52-179 90-219 (222)
53 PRK13499 rhamnose-proton sympo 95.1 0.43 9.3E-06 45.7 12.4 117 69-186 206-343 (345)
54 COG5006 rhtA Threonine/homoser 95.0 0.18 3.8E-06 47.0 9.3 73 108-180 205-278 (292)
55 KOG1444 Nucleotide-sugar trans 95.0 0.32 7E-06 46.1 11.2 100 119-231 84-183 (314)
56 KOG1582 UDP-galactose transpor 94.8 0.4 8.6E-06 45.3 11.2 176 36-225 36-214 (367)
57 KOG1583 UDP-N-acetylglucosamin 94.8 0.09 2E-06 49.5 6.9 118 114-231 66-194 (330)
58 PF00893 Multi_Drug_Res: Small 93.8 0.26 5.6E-06 38.0 6.7 55 121-175 38-93 (93)
59 PF06379 RhaT: L-rhamnose-prot 93.7 1.1 2.3E-05 43.1 11.8 164 44-215 5-187 (344)
60 PF06027 DUF914: Eukaryotic pr 93.3 0.64 1.4E-05 44.2 9.6 144 37-188 166-309 (334)
61 COG5006 rhtA Threonine/homoser 91.5 1.9 4E-05 40.4 9.9 158 42-229 15-172 (292)
62 KOG2922 Uncharacterized conser 91.5 0.062 1.4E-06 51.1 0.3 72 120-191 72-143 (335)
63 PF08449 UAA: UAA transporter 91.0 3.5 7.6E-05 37.6 11.3 59 125-184 239-297 (303)
64 COG2962 RarD Predicted permeas 90.5 1.9 4.2E-05 40.6 9.2 128 57-184 111-283 (293)
65 PF04657 DUF606: Protein of un 87.5 6.4 0.00014 32.6 9.4 104 72-181 29-138 (138)
66 PF10639 UPF0546: Uncharacteri 87.4 1 2.2E-05 36.8 4.5 62 120-181 49-111 (113)
67 PF06800 Sugar_transport: Suga 86.8 6.8 0.00015 36.4 10.1 104 70-181 161-268 (269)
68 TIGR00688 rarD rarD protein. T 85.8 2.7 5.8E-05 37.0 6.7 44 116-159 212-255 (256)
69 KOG1581 UDP-galactose transpor 85.4 9.2 0.0002 36.5 10.2 106 113-218 84-189 (327)
70 KOG2766 Predicted membrane pro 82.6 0.056 1.2E-06 50.5 -5.5 146 70-227 45-218 (336)
71 KOG1442 GDP-fucose transporter 69.2 1.8 4E-05 41.0 0.5 97 109-215 103-199 (347)
72 PF04142 Nuc_sug_transp: Nucle 68.1 79 0.0017 28.5 10.8 113 56-173 128-242 (244)
73 PF05884 ZYG-11_interact: Inte 60.5 1.6E+02 0.0034 28.1 14.9 127 33-172 94-223 (299)
74 COG1950 Predicted membrane pro 59.8 36 0.00078 28.3 6.3 80 108-221 30-109 (120)
75 KOG2765 Predicted membrane pro 59.5 15 0.00032 36.2 4.6 73 116-188 322-394 (416)
76 PF07857 DUF1632: CEO family ( 59.1 32 0.00069 31.7 6.6 113 114-226 57-208 (254)
77 PF06379 RhaT: L-rhamnose-prot 59.0 1.8E+02 0.0039 28.3 13.0 150 35-186 168-342 (344)
78 PRK01844 hypothetical protein; 56.6 13 0.00028 28.3 3.0 28 41-68 4-31 (72)
79 COG4711 Predicted membrane pro 51.5 47 0.001 30.1 6.2 126 117-247 76-206 (217)
80 PRK04214 rbn ribonuclease BN/u 51.3 2.4E+02 0.0051 27.3 11.7 64 108-183 208-271 (412)
81 PRK00523 hypothetical protein; 50.3 19 0.00041 27.4 3.0 28 41-68 5-32 (72)
82 KOG1623 Multitransmembrane pro 49.1 27 0.00058 32.2 4.4 83 142-232 73-155 (243)
83 KOG1580 UDP-galactose transpor 46.8 1.3E+02 0.0027 28.5 8.3 113 128-243 101-213 (337)
84 COG4975 GlcU Putative glucose 45.1 1.7 3.6E-05 40.6 -4.1 109 108-217 55-168 (288)
85 KOG3626 Organic anion transpor 38.8 2.4E+02 0.0053 30.0 10.0 49 135-183 424-477 (735)
86 KOG2325 Predicted transporter/ 38.0 3.6E+02 0.0077 27.3 10.6 181 35-228 30-233 (488)
87 PRK05122 major facilitator sup 36.4 3.3E+02 0.0071 24.7 16.6 36 48-86 154-189 (399)
88 KOG1580 UDP-galactose transpor 36.2 72 0.0016 30.1 5.0 55 127-181 256-310 (337)
89 COG4975 GlcU Putative glucose 34.4 24 0.00052 33.1 1.6 77 108-184 205-285 (288)
90 PF07690 MFS_1: Major Facilita 33.4 3.2E+02 0.0069 23.6 10.9 26 45-70 124-149 (352)
91 PRK08633 2-acyl-glycerophospho 32.4 6.3E+02 0.014 26.7 17.1 21 48-68 145-165 (1146)
92 PF11293 DUF3094: Protein of u 31.9 59 0.0013 23.5 3.0 32 33-64 23-54 (55)
93 COG5070 VRG4 Nucleotide-sugar 31.8 97 0.0021 29.0 5.1 58 129-186 85-142 (309)
94 PF03631 Virul_fac_BrkB: Virul 31.4 3.6E+02 0.0079 23.7 11.3 47 108-159 191-237 (260)
95 KOG2568 Predicted membrane pro 29.8 59 0.0013 33.1 3.7 49 41-92 385-433 (518)
96 KOG1441 Glucose-6-phosphate/ph 28.3 30 0.00065 32.9 1.3 65 119-183 242-306 (316)
97 COG3296 Uncharacterized protei 25.5 2.3E+02 0.0049 24.2 5.8 48 168-225 73-120 (143)
98 PRK12664 putative monovalent c 24.9 2.3E+02 0.0051 28.8 6.9 52 112-166 388-439 (527)
99 PF07695 7TMR-DISM_7TM: 7TM di 24.5 3.8E+02 0.0083 21.7 14.7 25 159-183 146-170 (205)
100 KOG2234 Predicted UDP-galactos 24.2 6.7E+02 0.015 24.4 12.9 127 52-186 188-324 (345)
101 TIGR01299 synapt_SV2 synaptic 23.1 9.1E+02 0.02 25.5 13.8 123 49-184 602-733 (742)
102 PF02487 CLN3: CLN3 protein; 22.8 3.2E+02 0.007 26.8 7.2 36 150-185 74-109 (402)
103 PF06609 TRI12: Fungal trichot 22.5 8.6E+02 0.019 25.2 10.5 128 30-159 156-289 (599)
104 PF08041 PetM: PetM family of 21.5 94 0.002 20.0 2.2 24 44-70 7-30 (31)
105 cd06174 MFS The Major Facilita 21.4 5.1E+02 0.011 22.0 14.5 26 45-70 126-151 (352)
106 PRK11383 hypothetical protein; 21.0 5.4E+02 0.012 22.1 7.8 17 195-211 103-119 (145)
107 PF06570 DUF1129: Protein of u 20.2 5.7E+02 0.012 22.1 8.9 14 152-165 189-202 (206)
No 1
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.69 E-value=3.6e-16 Score=140.32 Aligned_cols=132 Identities=25% Similarity=0.371 Sum_probs=114.1
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhhhcccchhhHHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCC
Q 043307 108 ISTLVCLYVAFGLLLTGDNMMYSYGLLYLPLSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNAD 187 (248)
Q Consensus 108 ~~~l~~~~~~lGvl~a~~n~lYa~gl~yLp~ST~sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll~l~~~ 187 (248)
.+|-...+++=+++|+.+|.++.+++.|+|++||+++.++++++||+|++++.|+|+++.+|.|++++++|.++.+.++.
T Consensus 13 ~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~ 92 (244)
T PF04142_consen 13 SPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSS 92 (244)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCc
Confidence 35667788899999999999999999999999999999999999999999999999999999999999999999887664
Q ss_pred CCC--CC--C----CCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccceeeehh-hhhhh
Q 043307 188 SEN--TS--G----VSKGNYVIGFLCTLGASATYSLYLSLLQLSFEKVIKKETFSVVMD-MQIYS 243 (248)
Q Consensus 188 s~~--~~--~----~~~~~y~lGf~~tL~Asalygl~l~L~ql~f~Kv~k~~t~~~vle-mQi~~ 243 (248)
.++ ++ + .++..+.+|+++++.++.++|+ ...++||++|++..+.+++ +|++.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~----agVy~E~~lK~~~~s~~~~N~qL~~ 153 (244)
T PF04142_consen 93 QSSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGF----AGVYFEKLLKRSNVSLWIQNMQLYL 153 (244)
T ss_pred cccccccccccccccccchhHhHHHHHHHHHHHHHH----HHHHHHHHhcccchhHHHHHHHHHH
Confidence 431 11 1 1345688999999999999999 6666799999988788886 88775
No 2
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.68 E-value=4e-16 Score=146.40 Aligned_cols=128 Identities=23% Similarity=0.273 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhcccchhhHHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCCCCC
Q 043307 112 VCLYVAFGLLLTGDNMMYSYGLLYLPLSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADSENT 191 (248)
Q Consensus 112 ~~~~~~lGvl~a~~n~lYa~gl~yLp~ST~sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll~l~~~s~~~ 191 (248)
.....+=.++|+.||.++-+++.|+|++||++.++.++.+||+|+.+++++|+++.||.|++++++|+++++++..+..+
T Consensus 92 ~lk~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~ 171 (345)
T KOG2234|consen 92 TLKVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTG 171 (345)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCC
Confidence 33444556799999999999999999999999999999999999999999999999999999999999999966544332
Q ss_pred --CCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccceeeehh-hhhhh
Q 043307 192 --SGVSKGNYVIGFLCTLGASATYSLYLSLLQLSFEKVIKKETFSVVMD-MQIYS 243 (248)
Q Consensus 192 --~~~~~~~y~lGf~~tL~Asalygl~l~L~ql~f~Kv~k~~t~~~vle-mQi~~ 243 (248)
++.+..+.+.|+...+++|.++|+ .+.+|||++|+..-+++++ +|++.
T Consensus 172 a~~~~~~~n~~~G~~avl~~c~~Sgf----AgvYfEkiLK~s~~s~wi~NiqL~~ 222 (345)
T KOG2234|consen 172 AKSESSAQNPFLGLVAVLVACFLSGF----AGVYFEKILKGSNVSLWIRNIQLYF 222 (345)
T ss_pred ccCCCcccchhhhHHHHHHHHHHHHH----HHHHHHHHHhcCCchHHHHHHHHHH
Confidence 356788999999999999999999 8899999999999899987 88875
No 3
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.51 E-value=1.5e-13 Score=130.38 Aligned_cols=131 Identities=19% Similarity=0.301 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhhcccchhhHHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCCC
Q 043307 110 TLVCLYVAFGLLLTGDNMMYSYGLLYLPLSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADSE 189 (248)
Q Consensus 110 ~l~~~~~~lGvl~a~~n~lYa~gl~yLp~ST~sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll~l~~~s~ 189 (248)
+.+...+.++++|.+.|+.|+.+++|..|+..+++.+|.-.||.+++.+...+|||..++.+|.+...|.+++..+++..
T Consensus 157 ~~ak~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~ 236 (416)
T KOG2765|consen 157 QTAKLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQ 236 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccc
Confidence 78889999999999999999999999999999999999999999999999999999999999999999999977776544
Q ss_pred CCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhc
Q 043307 190 NTSGVSKGNYVIGFLCTLGASATYSLYLSLLQLSFEKVIKKETFSVVMDMQIYSSFVA 247 (248)
Q Consensus 190 ~~~~~~~~~y~lGf~~tL~Asalygl~l~L~ql~f~Kv~k~~t~~~vlemQi~~slvA 247 (248)
.++...++..+|.++++.+|++||+|+.+. +|-..++. --++||++.++|.
T Consensus 237 -~~~~~a~~~llG~llaL~sA~~YavY~vll----k~~~~~eg--~rvdi~lffGfvG 287 (416)
T KOG2765|consen 237 -NSDLPASRPLLGNLLALLSALLYAVYTVLL----KRKIGDEG--ERVDIQLFFGFVG 287 (416)
T ss_pred -cccCCccchhHHHHHHHHHHHHHHHHHHHH----Hhhccccc--ccccHHHHHHHHH
Confidence 344556678999999999999999999998 77666661 2788999988874
No 4
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.50 E-value=1e-12 Score=123.36 Aligned_cols=168 Identities=17% Similarity=0.219 Sum_probs=125.2
Q ss_pred CCCchhHHHHHhhhCchhhhhhhhhcccCCCCCCCCCCchHHHHHHHHHHHHHHHHhHHHHHhhhcccchhhHHHHHhhh
Q 043307 69 GGNSKWMATFVQSAGFPILLPVLCCFSNGSRSTNKTDPKISTLVCLYVAFGLLLTGDNMMYSYGLLYLPLSTYSLLCATQ 148 (248)
Q Consensus 69 gG~s~W~~t~vqtagfPlll~~~~~~~~~~~~~~~~~p~~~~l~~~~~~lGvl~a~~n~lYa~gl~yLp~ST~sLi~sTq 148 (248)
|=+-+.++++..=..-.+..-|..+.+. .++ ......++--..|+.+|++....|++...|+.|.++++.+++.++-
T Consensus 39 ~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~-~~~--~~~~~~~~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~ 115 (334)
T PF06027_consen 39 GVNIPTFQSFFNYVLLALVYTPILLYRR-GFK--KWLKVLKRPWWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTS 115 (334)
T ss_pred CccCcHHHHHHHHHHHHHHHhhhhhhcc-ccc--cchhhcchhHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhh
Confidence 6667888887765443333333333211 111 1111122334578889999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043307 149 LAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADSENTSGVSKGNYVIGFLCTLGASATYSLYLSLLQLSFEKVI 228 (248)
Q Consensus 149 L~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll~l~~~s~~~~~~~~~~y~lGf~~tL~Asalygl~l~L~ql~f~Kv~ 228 (248)
..|+.++|++++|+|+++.++.++++.+.|.+++...|....+++.+..+.++|.++++.||++||++-.+. ||.+
T Consensus 116 i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~l~~a~lya~~nV~~----E~~v 191 (334)
T PF06027_consen 116 IPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLALLGAILYAVSNVLE----EKLV 191 (334)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHHHHHHHHHHHHHHHH----HHhc
Confidence 999999999999999999999999999999999877664433333455678999999999999999988877 6666
Q ss_pred cccceeeehhhhhhhhhh
Q 043307 229 KKETFSVVMDMQIYSSFV 246 (248)
Q Consensus 229 k~~t~~~vlemQi~~slv 246 (248)
|+.+ ..|+.-..+++
T Consensus 192 ~~~~---~~~~lg~~Glf 206 (334)
T PF06027_consen 192 KKAP---RVEFLGMLGLF 206 (334)
T ss_pred ccCC---HHHHHHHHHHH
Confidence 6655 34554444444
No 5
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.23 E-value=4.8e-10 Score=102.19 Aligned_cols=177 Identities=15% Similarity=0.197 Sum_probs=132.9
Q ss_pred HHHHHHHHHhcCCC-chhHHHHHhhhCchhhhhhhhhcccCCCCCCCCCCchHHHHHHHHHHHHHHHHhHHHHHhhhccc
Q 043307 58 ATLLGRLYYDKGGN-SKWMATFVQSAGFPILLPVLCCFSNGSRSTNKTDPKISTLVCLYVAFGLLLTGDNMMYSYGLLYL 136 (248)
Q Consensus 58 ~~LL~r~Yy~~gG~-s~W~~t~vqtagfPlll~~~~~~~~~~~~~~~~~p~~~~l~~~~~~lGvl~a~~n~lYa~gl~yL 136 (248)
+.+..++.-.+.++ ..|+.+++|-+.-.+.-.+......+++ .+..| ..-|+..+++....+.+-..++.|+
T Consensus 16 g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~~~~~~~~~~~~~al~~i 88 (303)
T PF08449_consen 16 GILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKFPK--SRKIP-----LKKYAILSFLFFLASVLSNAALKYI 88 (303)
T ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccccC--CCcCh-----HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45566666666666 6999999999888876655544322111 12222 2245666788888999999999999
Q ss_pred chhhHHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCCCCCCC-CCCcccchhHHHHHHHHHHHHH
Q 043307 137 PLSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADSENTSG-VSKGNYVIGFLCTLGASATYSL 215 (248)
Q Consensus 137 p~ST~sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll~l~~~s~~~~~-~~~~~y~lGf~~tL~Asalygl 215 (248)
|++|+.++-++++++++++++++.|+|.++.++.+++++++|.++.+++++.+++.. ..+.....|.++.+.+-++.|+
T Consensus 89 ~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~ 168 (303)
T PF08449_consen 89 SYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLLDAF 168 (303)
T ss_pred ChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988876655433 2223334599999999999999
Q ss_pred HHHHHHHHHHHhhcccceeeehhhhhhhhhh
Q 043307 216 YLSLLQLSFEKVIKKETFSVVMDMQIYSSFV 246 (248)
Q Consensus 216 ~l~L~ql~f~Kv~k~~t~~~vlemQi~~slv 246 (248)
....-|..++|.-+.. .|+-.+..+.
T Consensus 169 ~~~~qe~~~~~~~~~~-----~~~mfy~n~~ 194 (303)
T PF08449_consen 169 TGVYQEKLFKKYGKSP-----WELMFYTNLF 194 (303)
T ss_pred HHHHHHHHHHHhCCcH-----HHHHHHHHHH
Confidence 8888876666543322 5555555443
No 6
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.12 E-value=6.1e-09 Score=94.19 Aligned_cols=152 Identities=16% Similarity=0.121 Sum_probs=108.5
Q ss_pred HHHHHHHHHhcCCCchhHHHHHhhhC-chhhhhhhhhcccCCCCCCCCCCchHHHHHHHHHHHHHHHHhHHHHHhhhccc
Q 043307 58 ATLLGRLYYDKGGNSKWMATFVQSAG-FPILLPVLCCFSNGSRSTNKTDPKISTLVCLYVAFGLLLTGDNMMYSYGLLYL 136 (248)
Q Consensus 58 ~~LL~r~Yy~~gG~s~W~~t~vqtag-fPlll~~~~~~~~~~~~~~~~~p~~~~l~~~~~~lGvl~a~~n~lYa~gl~yL 136 (248)
-.++.+.=. ++..-++..++.|-.. +.++.+. .....++++ +..++-....+.+|++.+.+..+.++|++|+
T Consensus 17 ~~~~NK~~l-~~~~~P~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~ 89 (302)
T TIGR00817 17 FNIYNKKLL-NVFPYPYFKTLISLAVGSLYCLLS-WSSGLPKRL-----KISSALLKLLLPVAIVHTIGHVTSNVSLSKV 89 (302)
T ss_pred HHHHHHHHH-hhCChhHHHHHHHHHHHHHHHHHH-HHhCCCCCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444333 3457789999988653 3332222 111111111 1223444556667777788888999999999
Q ss_pred chhhHHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcccchhHHHHHHHHHHHHHH
Q 043307 137 PLSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADSENTSGVSKGNYVIGFLCTLGASATYSLY 216 (248)
Q Consensus 137 p~ST~sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll~l~~~s~~~~~~~~~~y~lGf~~tL~Asalygl~ 216 (248)
++|.++++.+++.+|++++++++.|||+++.++.++++.++|+++.+ +.+. +....|+++.++|++.++++
T Consensus 90 s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~-~~~~--------~~~~~G~~~~l~a~~~~a~~ 160 (302)
T TIGR00817 90 AVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALAS-DTEL--------SFNWAGFLSAMISNITFVSR 160 (302)
T ss_pred cHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhc-CCcc--------cccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998743 1111 12357999999999999998
Q ss_pred HHHHHHHHHHhhc
Q 043307 217 LSLLQLSFEKVIK 229 (248)
Q Consensus 217 l~L~ql~f~Kv~k 229 (248)
.... ||..+
T Consensus 161 ~v~~----k~~~~ 169 (302)
T TIGR00817 161 NIFS----KKAMT 169 (302)
T ss_pred HHHH----HHhhc
Confidence 7766 66655
No 7
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.10 E-value=1.1e-08 Score=95.85 Aligned_cols=168 Identities=13% Similarity=0.091 Sum_probs=113.9
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHhcCCCchhHHHHHhhh-CchhhhhhhhhcccCCCCCCCCCCchHHHHHHHHHHHHH
Q 043307 43 RVILYVVCLLVGQSAATLLGRLYYDKGGNSKWMATFVQSA-GFPILLPVLCCFSNGSRSTNKTDPKISTLVCLYVAFGLL 121 (248)
Q Consensus 43 lv~~~~~~l~~G~~~~~LL~r~Yy~~gG~s~W~~t~vqta-gfPlll~~~~~~~~~~~~~~~~~p~~~~l~~~~~~lGvl 121 (248)
.+.+.++.-...+....+..+.=.+. -.-+|..++.|-. ++-+..+.+..-+.++++ . +..++-....+.+|++
T Consensus 49 ~~~~~~~~wy~~s~~~~~~nK~vl~~-~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~---~-~~~~~~~~~llp~gl~ 123 (350)
T PTZ00343 49 KLALLFLTWYALNVLYVVDNKLALNM-LPLPWTISSLQLFVGWLFALLYWATGFRKIPR---I-KSLKLFLKNFLPQGLC 123 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-CChhHHHHHHHHHHHHHHHHHHHHhCCCCCCC---C-CCHHHHHHHHHHHHHH
Confidence 33344455555556666666655544 3448999999965 444443333222221111 1 1112222333344444
Q ss_pred HHHhHHHHHhhhcccchhhHHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcccch
Q 043307 122 LTGDNMMYSYGLLYLPLSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADSENTSGVSKGNYVI 201 (248)
Q Consensus 122 ~a~~n~lYa~gl~yLp~ST~sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll~l~~~s~~~~~~~~~~y~l 201 (248)
....+.....|+++.++|.++++-++.++||+++++++.+||+++.++.++++.++|..+...++. +....
T Consensus 124 ~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~---------~~~~~ 194 (350)
T PTZ00343 124 HLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKEL---------HFTWL 194 (350)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccc---------hhHHH
Confidence 444445455899999999999999999999999999999999999999999999999999653211 12468
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 043307 202 GFLCTLGASATYSLYLSLLQLSF 224 (248)
Q Consensus 202 Gf~~tL~Asalygl~l~L~ql~f 224 (248)
|+++++.|++.++++..+.+...
T Consensus 195 G~~~~l~s~~~~a~~~i~~k~~~ 217 (350)
T PTZ00343 195 AFWCAMLSNLGSSLRSIFAKKTM 217 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998884433
No 8
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.06 E-value=8.5e-09 Score=90.02 Aligned_cols=148 Identities=20% Similarity=0.228 Sum_probs=105.0
Q ss_pred HHHHHHHhcCCCchhHHHHHhhhCchhhhhhhhhcccCCCCCCCCCCchHHHHHHHHHHHHHHHHhHHHHHhhhcccchh
Q 043307 60 LLGRLYYDKGGNSKWMATFVQSAGFPILLPVLCCFSNGSRSTNKTDPKISTLVCLYVAFGLLLTGDNMMYSYGLLYLPLS 139 (248)
Q Consensus 60 LL~r~Yy~~gG~s~W~~t~vqtagfPlll~~~~~~~~~~~~~~~~~p~~~~l~~~~~~lGvl~a~~n~lYa~gl~yLp~S 139 (248)
...|.-.++ +-..|..++.....-++++.|.+..+ + + .++.....+..++..+..+.+|.+|++|+|++
T Consensus 6 ~~~k~~~~~-~~~~~~~~~~r~~~~~l~l~~~~~~~----~-----~-~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~ 74 (260)
T TIGR00950 6 VVIGQYLEG-QVPLYFAVFRRLIFALLLLLPLLRRR----P-----P-LKRLLRLLLLGALQIGVFYVLYFVAVKRLPVG 74 (260)
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHhc----c-----C-HhHHHHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 344554444 34455555555543344444443321 1 1 11222333444455678889999999999999
Q ss_pred hHHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHH
Q 043307 140 TYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADSENTSGVSKGNYVIGFLCTLGASATYSLYLSL 219 (248)
Q Consensus 140 T~sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll~l~~~s~~~~~~~~~~y~lGf~~tL~Asalygl~l~L 219 (248)
+.+++.+++.+|+++++.++.|||.++.++.++++..+|..++..+++ .+.+..|+++.+.|++.++.+...
T Consensus 75 ~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~--------~~~~~~G~~~~l~a~~~~a~~~~~ 146 (260)
T TIGR00950 75 EAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGN--------LSINPAGLLLGLGSGISFALGTVL 146 (260)
T ss_pred hhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCc--------ccccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999763321 123468999999999999998777
Q ss_pred HHHHHHHhhcc
Q 043307 220 LQLSFEKVIKK 230 (248)
Q Consensus 220 ~ql~f~Kv~k~ 230 (248)
. +|..++
T Consensus 147 ~----k~~~~~ 153 (260)
T TIGR00950 147 Y----KRLVKK 153 (260)
T ss_pred H----hHHhhc
Confidence 7 665544
No 9
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.99 E-value=4.1e-08 Score=92.86 Aligned_cols=164 Identities=16% Similarity=0.089 Sum_probs=108.5
Q ss_pred hccchHHHHHHHHHhcCCCchhHHHHHhhhCchhhhhhhhhcccCCCCCCCCCCchHHHHHHHHHHHHHHHHhHHHHHhh
Q 043307 53 VGQSAATLLGRLYYDKGGNSKWMATFVQSAGFPILLPVLCCFSNGSRSTNKTDPKISTLVCLYVAFGLLLTGDNMMYSYG 132 (248)
Q Consensus 53 ~G~~~~~LL~r~Yy~~gG~s~W~~t~vqtagfPlll~~~~~~~~~~~~~~~~~p~~~~l~~~~~~lGvl~a~~n~lYa~g 132 (248)
++..+=..+.|.-++.|=+..-+..+=-..+..+++|..+..+ ++++ .+ +..+|.....+.+|++-...+.++.+|
T Consensus 23 ~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~-~~~~--~~-~~~~~~~~~l~l~g~~g~~~~~~~~~g 98 (358)
T PLN00411 23 TSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTN-RSRS--LP-PLSVSILSKIGLLGFLGSMYVITGYIG 98 (358)
T ss_pred HHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHH-Hhcc--cC-cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556788888866666554444433444444444333321 1111 11 111222233333444444455678899
Q ss_pred hcccchhhHHHHHhhhhHHHHHHHHHH------hccccchHHHHHHHHHHHHHHHHhccCCCC---------------C-
Q 043307 133 LLYLPLSTYSLLCATQLAFNAFFSFFL------NSQKFTPFIFNSLVLLTISATLLAVNADSE---------------N- 190 (248)
Q Consensus 133 l~yLp~ST~sLi~sTqL~FTAiFs~li------~~~kfT~~~insvvLlt~g~~Ll~l~~~s~---------------~- 190 (248)
++|+|++..+++.+++.+|++++++++ .+||.++.++.++++..+|+.++..+.+.. .
T Consensus 99 l~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~ 178 (358)
T PLN00411 99 IEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSP 178 (358)
T ss_pred HhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccccccccccccccccc
Confidence 999999999999999999999999999 699999999999999999999876533211 0
Q ss_pred CCCCCCcccchhHHHHHHHHHHHHHHHHHH
Q 043307 191 TSGVSKGNYVIGFLCTLGASATYSLYLSLL 220 (248)
Q Consensus 191 ~~~~~~~~y~lGf~~tL~Asalygl~l~L~ 220 (248)
+.........+|..+.++|++.++++..+.
T Consensus 179 ~~~~~~~~~~lG~~l~l~aa~~wa~~~il~ 208 (358)
T PLN00411 179 PLSSSNSDWLIGGALLTIQGIFVSVSFILQ 208 (358)
T ss_pred ccCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 011122334669999999999999988777
No 10
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.90 E-value=5.8e-08 Score=85.73 Aligned_cols=149 Identities=12% Similarity=0.056 Sum_probs=102.6
Q ss_pred chHHHHHHHHHhcCCCchhHHHHHhhh-CchhhhhhhhhcccCCC-CCCCCCCchHHHHHHHHHHHHHHHHhHHHHHhhh
Q 043307 56 SAATLLGRLYYDKGGNSKWMATFVQSA-GFPILLPVLCCFSNGSR-STNKTDPKISTLVCLYVAFGLLLTGDNMMYSYGL 133 (248)
Q Consensus 56 ~~~~LL~r~Yy~~gG~s~W~~t~vqta-gfPlll~~~~~~~~~~~-~~~~~~p~~~~l~~~~~~lGvl~a~~n~lYa~gl 133 (248)
....+..|.. .+ -+++...+.... |.+++++.......+++ +++-+.+..++........|++.+..+.+|.+|+
T Consensus 15 g~~~~~~k~~--~~-~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~a~ 91 (256)
T TIGR00688 15 GYMYYYSKLL--KP-LPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLLIGFNWWLFIWAV 91 (256)
T ss_pred HHHHHHHHHh--cc-CCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667752 22 555655555553 56655443333221110 0000111122344455666778899999999999
Q ss_pred cccchhhHHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcccchhHHHHHHHHHHH
Q 043307 134 LYLPLSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADSENTSGVSKGNYVIGFLCTLGASATY 213 (248)
Q Consensus 134 ~yLp~ST~sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll~l~~~s~~~~~~~~~~y~lGf~~tL~Asaly 213 (248)
+|.|+++.+++.++..+|+++++.++.|||+++.++.++++..+|.+++..+ +++ .. ++.++|++.|
T Consensus 92 ~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~-~~~--------~~----~~~l~aa~~~ 158 (256)
T TIGR00688 92 NNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVL-KGS--------LP----WEALVLAFSF 158 (256)
T ss_pred HcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-cCC--------ch----HHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999986532 111 11 3578889999
Q ss_pred HHHHHHH
Q 043307 214 SLYLSLL 220 (248)
Q Consensus 214 gl~l~L~ 220 (248)
+++....
T Consensus 159 a~~~i~~ 165 (256)
T TIGR00688 159 TAYGLIR 165 (256)
T ss_pred HHHHHHH
Confidence 9887766
No 11
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.85 E-value=4.3e-07 Score=82.17 Aligned_cols=163 Identities=17% Similarity=0.097 Sum_probs=109.6
Q ss_pred hhHHHHHHHHHHHHhccchHHHHHHHHHhcCCCchhHHHHHhhh-CchhhhhhhhhcccCCCCCCCCCCchHHHHHHHHH
Q 043307 39 KWWLRVILYVVCLLVGQSAATLLGRLYYDKGGNSKWMATFVQSA-GFPILLPVLCCFSNGSRSTNKTDPKISTLVCLYVA 117 (248)
Q Consensus 39 ~~w~lv~~~~~~l~~G~~~~~LL~r~Yy~~gG~s~W~~t~vqta-gfPlll~~~~~~~~~~~~~~~~~p~~~~l~~~~~~ 117 (248)
|.-+-+++..+++.+=-..+.+..|.=.+ +-+++..+..... +..+++ |++..+. ++ . + .+|.....+.
T Consensus 4 ~~~~~~~~~~~~~~~iWg~~~~~~K~~~~--~~~p~~~~~~R~~~a~l~ll-~~~~~~~--~~--~--~-~~~~~~~~~~ 73 (292)
T PRK11272 4 RQLLPLFGALFALYIIWGSTYLVIRIGVE--SWPPLMMAGVRFLIAGILLL-AFLLLRG--HP--L--P-TLRQWLNAAL 73 (292)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhc--cCCHHHHHHHHHHHHHHHHH-HHHHHhC--CC--C--C-cHHHHHHHHH
Confidence 33344444455544444567777885444 4566666666655 444444 3433321 11 0 1 1222333445
Q ss_pred HHHHH-HHhHHHHHhhh-cccchhhHHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 043307 118 FGLLL-TGDNMMYSYGL-LYLPLSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADSENTSGVS 195 (248)
Q Consensus 118 lGvl~-a~~n~lYa~gl-~yLp~ST~sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll~l~~~s~~~~~~~ 195 (248)
.|++. ...+.++.++. .+.|++..+++.+++.+|+++++.+ +|||+++.++.++++..+|..++..+++.
T Consensus 74 ~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~------- 145 (292)
T PRK11272 74 IGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNL------- 145 (292)
T ss_pred HHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCccc-------
Confidence 56553 45667777888 9999999999999999999999986 69999999999999999998886433211
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHH
Q 043307 196 KGNYVIGFLCTLGASATYSLYLSLL 220 (248)
Q Consensus 196 ~~~y~lGf~~tL~Asalygl~l~L~ 220 (248)
+....|.++.+.|+..|+++....
T Consensus 146 -~~~~~G~l~~l~a~~~~a~~~~~~ 169 (292)
T PRK11272 146 -SGNPWGAILILIASASWAFGSVWS 169 (292)
T ss_pred -ccchHHHHHHHHHHHHHHHHHHHH
Confidence 123579999999999999987665
No 12
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.68 E-value=2.4e-06 Score=74.10 Aligned_cols=102 Identities=20% Similarity=0.265 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHhHHHHHhhhcccchhhHHHHHhhhhHHHHHHHH-HHhccccchHHHHHHHHHHHHHHHHhccCCCCCC
Q 043307 113 CLYVAFGLLLTGDNMMYSYGLLYLPLSTYSLLCATQLAFNAFFSF-FLNSQKFTPFIFNSLVLLTISATLLAVNADSENT 191 (248)
Q Consensus 113 ~~~~~lGvl~a~~n~lYa~gl~yLp~ST~sLi~sTqL~FTAiFs~-li~~~kfT~~~insvvLlt~g~~Ll~l~~~s~~~ 191 (248)
...+..++..+..+.+|..+..|+|+++.+.+.++...|+++++. ++.+||+++.++.++++..+|..++..++..+..
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~ 150 (292)
T COG0697 71 LLLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGI 150 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchh
Confidence 344555677788889999999999999999999999999999996 7779999999999999999999997654433221
Q ss_pred CCCCCcccchhHHHHHHHHHHHHHHHHHH
Q 043307 192 SGVSKGNYVIGFLCTLGASATYSLYLSLL 220 (248)
Q Consensus 192 ~~~~~~~y~lGf~~tL~Asalygl~l~L~ 220 (248)
. +..|.++.+.+++.++++....
T Consensus 151 ~------~~~g~~~~l~a~~~~a~~~~~~ 173 (292)
T COG0697 151 L------SLLGLLLALAAALLWALYTALV 173 (292)
T ss_pred H------HHHHHHHHHHHHHHHHHHHHHH
Confidence 1 6899999999999999876666
No 13
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.68 E-value=5.9e-07 Score=81.56 Aligned_cols=93 Identities=11% Similarity=0.161 Sum_probs=78.5
Q ss_pred HHHHHHHHHHhHHHHHhhhcccchhhHHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCCCCCCCC
Q 043307 115 YVAFGLLLTGDNMMYSYGLLYLPLSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADSENTSGV 194 (248)
Q Consensus 115 ~~~lGvl~a~~n~lYa~gl~yLp~ST~sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll~l~~~s~~~~~~ 194 (248)
.+..++..+.++.+|.+|++|+|++..+++.++..+|++++++++.|||+++.++.++++..+|.+++.-+ +++.
T Consensus 76 ~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~-~~~~---- 150 (296)
T PRK15430 76 LAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWT-FGSL---- 150 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH-cCCc----
Confidence 33556778889999999999999999999999999999999999999999999999999999999986422 1110
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHHH
Q 043307 195 SKGNYVIGFLCTLGASATYSLYLSLL 220 (248)
Q Consensus 195 ~~~~y~lGf~~tL~Asalygl~l~L~ 220 (248)
.+..++|++.|+++..+.
T Consensus 151 --------~~~~l~aa~~~a~~~i~~ 168 (296)
T PRK15430 151 --------PIIALGLAFSFAFYGLVR 168 (296)
T ss_pred --------cHHHHHHHHHHHHHHHHH
Confidence 145778899999988665
No 14
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.68 E-value=1.7e-06 Score=78.61 Aligned_cols=98 Identities=15% Similarity=0.235 Sum_probs=78.4
Q ss_pred HhHHHHHhhhcc-cchhhHHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcccchh
Q 043307 124 GDNMMYSYGLLY-LPLSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADSENTSGVSKGNYVIG 202 (248)
Q Consensus 124 ~~n~lYa~gl~y-Lp~ST~sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll~l~~~s~~~~~~~~~~y~lG 202 (248)
.+..+|..++.| +|++..+++.+++.++++++++++.|||+++.++.++++.++|..++..++..+ ......|
T Consensus 71 ~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~------~~~~~~G 144 (299)
T PRK11453 71 GQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNG------QHVAMLG 144 (299)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCC------cchhHHH
Confidence 344455578877 799999999999999999999999999999999999999999998875332111 1113579
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 043307 203 FLCTLGASATYSLYLSLLQLSFEKVIKKE 231 (248)
Q Consensus 203 f~~tL~Asalygl~l~L~ql~f~Kv~k~~ 231 (248)
.++++.|++.++++.-+. +|..++.
T Consensus 145 ~~l~l~aal~~a~~~v~~----~~~~~~~ 169 (299)
T PRK11453 145 FMLTLAAAFSWACGNIFN----KKIMSHS 169 (299)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHhccc
Confidence 999999999999988887 6655443
No 15
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.61 E-value=2.5e-06 Score=76.70 Aligned_cols=99 Identities=9% Similarity=0.077 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHhHHHHHhhhcccchhhHHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCCCCCCC
Q 043307 114 LYVAFGLLLTGDNMMYSYGLLYLPLSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADSENTSG 193 (248)
Q Consensus 114 ~~~~lGvl~a~~n~lYa~gl~yLp~ST~sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll~l~~~s~~~~~ 193 (248)
..+..|+..+....++..|+++.|++..+.+.+++.+++++++.++.|||+++.++.++++..+|..++..+++. +
T Consensus 65 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~-~--- 140 (281)
T TIGR03340 65 LLAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFA-Q--- 140 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccccc-c---
Confidence 344456667788888889999999999999999999999999999999999999999999999999987643211 1
Q ss_pred CCCcccchhHHHHHHHHHHHHHHHHHH
Q 043307 194 VSKGNYVIGFLCTLGASATYSLYLSLL 220 (248)
Q Consensus 194 ~~~~~y~lGf~~tL~Asalygl~l~L~ 220 (248)
....|+.+.+.+++.|+++..+.
T Consensus 141 ----~~~~g~~~~l~aal~~a~~~i~~ 163 (281)
T TIGR03340 141 ----HRRKAYAWALAAALGTAIYSLSD 163 (281)
T ss_pred ----cchhHHHHHHHHHHHHHHhhhhc
Confidence 12357778899999999977654
No 16
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.58 E-value=1.9e-07 Score=73.70 Aligned_cols=74 Identities=20% Similarity=0.373 Sum_probs=65.6
Q ss_pred HHHHHHHHH-HhHHHHHhhhcccchhhHHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCCC
Q 043307 115 YVAFGLLLT-GDNMMYSYGLLYLPLSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADSE 189 (248)
Q Consensus 115 ~~~lGvl~a-~~n~lYa~gl~yLp~ST~sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll~l~~~s~ 189 (248)
.+..|++.. .++.+|.+|++|.| +..+.+.++..+|+++++.++.|||+++..+.++++.++|.++++.++.++
T Consensus 37 ~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~~~ 111 (113)
T PF13536_consen 37 LILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDLTG 111 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhccc
Confidence 444466665 88999999999999 588899999999999999999999999999999999999999998877543
No 17
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.55 E-value=9e-07 Score=67.75 Aligned_cols=118 Identities=16% Similarity=0.168 Sum_probs=86.8
Q ss_pred HHHHHHHHHhcCCCchhHHHHHhhhCchhhhhhhhhcccCCCCCCCCCCchHHHHHHHHHHHHH-HHHhHHHHHhhhccc
Q 043307 58 ATLLGRLYYDKGGNSKWMATFVQSAGFPILLPVLCCFSNGSRSTNKTDPKISTLVCLYVAFGLL-LTGDNMMYSYGLLYL 136 (248)
Q Consensus 58 ~~LL~r~Yy~~gG~s~W~~t~vqtagfPlll~~~~~~~~~~~~~~~~~p~~~~l~~~~~~lGvl-~a~~n~lYa~gl~yL 136 (248)
...+.|.-.++ -+..++..+-...+.+ +++...+...++ . . ...++.....+..|++ .+..+.+|.+|++++
T Consensus 6 ~~~~~k~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 78 (126)
T PF00892_consen 6 YSVFSKKLLKK-ISPLSITFWRFLIAGI-LLILLLILGRKP-F---K-NLSPRQWLWLLFLGLLGTALAYLLYFYALKYI 78 (126)
T ss_pred HHHHHHHHhcc-CCHHHHHHHHHHHHHH-HHHHHHhhcccc-c---c-CCChhhhhhhhHhhccceehHHHHHHHHHHhc
Confidence 34455555555 5566777777777777 554444433221 1 1 1122333344555656 688999999999999
Q ss_pred chhhHHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH
Q 043307 137 PLSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLL 182 (248)
Q Consensus 137 p~ST~sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll 182 (248)
|++..+.+..+++++++++++++.+||+++.++.++++..+|.+++
T Consensus 79 ~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~ 124 (126)
T PF00892_consen 79 SASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI 124 (126)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998875
No 18
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.54 E-value=7.4e-07 Score=81.37 Aligned_cols=112 Identities=17% Similarity=0.190 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhcccchhhHHHHHh-hhhHHHHHHHHHHhccccchHH----HHHHHHHHHHHHHHh
Q 043307 109 STLVCLYVAFGLLLTGDNMMYSYGLLYLPLSTYSLLCA-TQLAFNAFFSFFLNSQKFTPFI----FNSLVLLTISATLLA 183 (248)
Q Consensus 109 ~~l~~~~~~lGvl~a~~n~lYa~gl~yLp~ST~sLi~s-TqL~FTAiFs~li~~~kfT~~~----insvvLlt~g~~Ll~ 183 (248)
+++....+..|++++..|+.|-.+.+|+.+|+...+.+ .|.++..+++.++.|||.|+.+ +.++++..+|..+++
T Consensus 56 ~~~~~~g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~ 135 (290)
T TIGR00776 56 LSIFLVGLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTS 135 (290)
T ss_pred cHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEE
Confidence 57888899999999999999999999999999999999 9999999999999999999999 999999999999876
Q ss_pred ccCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHH
Q 043307 184 VNADSENTSGVSKGNYVIGFLCTLGASATYSLYLSLLQ 221 (248)
Q Consensus 184 l~~~s~~~~~~~~~~y~lGf~~tL~Asalygl~l~L~q 221 (248)
.+++++..+ .++.++..|.++.+.+++.|+++....+
T Consensus 136 ~~~~~~~~~-~~~~~~~~Gi~~~l~sg~~y~~~~~~~~ 172 (290)
T TIGR00776 136 RSKDKSAGI-KSEFNFKKGILLLLMSTIGYLVYVVVAK 172 (290)
T ss_pred ecccccccc-ccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 654332211 1112345699999999999999998884
No 19
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.53 E-value=2.6e-06 Score=77.36 Aligned_cols=109 Identities=11% Similarity=0.146 Sum_probs=81.4
Q ss_pred HHHHHHhHHHHHhhh----cccchhhHHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCCCCCCC-
Q 043307 119 GLLLTGDNMMYSYGL----LYLPLSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADSENTSG- 193 (248)
Q Consensus 119 Gvl~a~~n~lYa~gl----~yLp~ST~sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll~l~~~s~~~~~- 193 (248)
|+..+..+.++..|. ++.|++..+++.+++.+|+++++.++.|||+++.++.++++..+|.+++..++.+....+
T Consensus 68 ~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~ 147 (295)
T PRK11689 68 GLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAEL 147 (295)
T ss_pred hHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhh
Confidence 334555555554554 467888999999999999999999999999999999999999999998764432111100
Q ss_pred -CCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 043307 194 -VSKGNYVIGFLCTLGASATYSLYLSLLQLSFEKVIKKE 231 (248)
Q Consensus 194 -~~~~~y~lGf~~tL~Asalygl~l~L~ql~f~Kv~k~~ 231 (248)
.+......|.++.+.|++.|+++..+. ||..++.
T Consensus 148 ~~~~~~~~~G~~~~l~aa~~~A~~~v~~----k~~~~~~ 182 (295)
T PRK11689 148 INNIASNPLSYGLAFIGAFIWAAYCNVT----RKYARGK 182 (295)
T ss_pred hhccccChHHHHHHHHHHHHHHHHHHHH----hhccCCC
Confidence 011234579999999999999998888 7665443
No 20
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.21 E-value=9.9e-05 Score=66.97 Aligned_cols=101 Identities=22% Similarity=0.288 Sum_probs=73.4
Q ss_pred HHHHHHHHHhHHHHHhhhcccchhhHHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 043307 116 VAFGLLLTGDNMMYSYGLLYLPLSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADSENTSGVS 195 (248)
Q Consensus 116 ~~lGvl~a~~n~lYa~gl~yLp~ST~sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll~l~~~s~~~~~~~ 195 (248)
+..|++.+..+.++.+|++|+|++..+.+..|+++|+++++ +||..+.++ +.+..+|..++..+ +.+.
T Consensus 75 ~~~g~~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~~~~~--~~i~~~Gv~li~~~-~~~~----- 142 (293)
T PRK10532 75 LFYGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPVDFVW--VVLAVLGLWFLLPL-GQDV----- 142 (293)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChHHHHH--HHHHHHHHheeeec-CCCc-----
Confidence 34566678888889899999999999999999999999887 356555554 44556776664322 1111
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 043307 196 KGNYVIGFLCTLGASATYSLYLSLLQLSFEKVIKKET 232 (248)
Q Consensus 196 ~~~y~lGf~~tL~Asalygl~l~L~ql~f~Kv~k~~t 232 (248)
.+....|.++.++|++.|+++.-+. +|..++.+
T Consensus 143 ~~~~~~G~ll~l~aa~~~a~~~v~~----r~~~~~~~ 175 (293)
T PRK10532 143 SHVDLTGAALALGAGACWAIYILSG----QRAGAEHG 175 (293)
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHH----HHHhccCC
Confidence 1123579999999999999988888 66655443
No 21
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=98.03 E-value=4.2e-05 Score=71.93 Aligned_cols=119 Identities=20% Similarity=0.318 Sum_probs=98.5
Q ss_pred HHHHHHHhHHHHHhhhcccchhhHHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCCCCCCCCCCc
Q 043307 118 FGLLLTGDNMMYSYGLLYLPLSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADSENTSGVSKG 197 (248)
Q Consensus 118 lGvl~a~~n~lYa~gl~yLp~ST~sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll~l~~~s~~~~~~~~~ 197 (248)
.|+-.+.|=-+-++++.|.|+|-|+.+=++.++|-.+|+.+.--||+.+.-...+.+.-+|..+....++.
T Consensus 90 talata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTq--------- 160 (349)
T KOG1443|consen 90 TALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQ--------- 160 (349)
T ss_pred hhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccc---------
Confidence 35566677778889999999999999999999999999999999999888777777777777765544322
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHh--hcccceeeehhhhhhhhh
Q 043307 198 NYVIGFLCTLGASATYSLYLSLLQLSFEKV--IKKETFSVVMDMQIYSSF 245 (248)
Q Consensus 198 ~y~lGf~~tL~Asalygl~l~L~ql~f~Kv--~k~~t~~~vlemQi~~sl 245 (248)
-.+.||.+.++||++.|+=-+..|...+|. -++..+.+.-.+|-.|++
T Consensus 161 f~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~ 210 (349)
T KOG1443|consen 161 FNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSI 210 (349)
T ss_pred eeehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHH
Confidence 468899999999999999999999998874 367777777778877653
No 22
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=97.89 E-value=0.00046 Score=65.52 Aligned_cols=77 Identities=6% Similarity=0.005 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhcccchhhHHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCCCC
Q 043307 112 VCLYVAFGLLLTGDNMMYSYGLLYLPLSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADSEN 190 (248)
Q Consensus 112 ~~~~~~lGvl~a~~n~lYa~gl~yLp~ST~sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll~l~~~s~~ 190 (248)
..+|.++ ..+..-.++++++++++++..++....+++|++++++++.+|++++.++.+.++...|..+...+...|.
T Consensus 258 ~i~y~~i--~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~~~~~ 334 (358)
T PLN00411 258 TIVTMAI--ITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGKANEE 334 (358)
T ss_pred HHHHHHH--HHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 3445433 3456667888999999999999999999999999999999999999999999999999998776554443
No 23
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.85 E-value=0.0002 Score=57.39 Aligned_cols=65 Identities=9% Similarity=0.106 Sum_probs=61.1
Q ss_pred HHHHHhHHHHHhhhcccchhhHHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhc
Q 043307 120 LLLTGDNMMYSYGLLYLPLSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAV 184 (248)
Q Consensus 120 vl~a~~n~lYa~gl~yLp~ST~sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll~l 184 (248)
+.++...++++.+++.+|.|...-+-++..+++++.++++.+||+|+.++.++++..+|.++++.
T Consensus 45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~ 109 (111)
T PRK15051 45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS 109 (111)
T ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 56788889999999999999999999999999999999999999999999999999999998764
No 24
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=97.80 E-value=0.0012 Score=60.01 Aligned_cols=70 Identities=16% Similarity=0.142 Sum_probs=61.2
Q ss_pred HHHHH-HHHhHHHHHhhhcccchhhHHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccC
Q 043307 117 AFGLL-LTGDNMMYSYGLLYLPLSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNA 186 (248)
Q Consensus 117 ~lGvl-~a~~n~lYa~gl~yLp~ST~sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll~l~~ 186 (248)
.+|+. ......+|.+++++.|+++.+++...|++|++++++++.+|++++.++.+.++...|..+.....
T Consensus 213 ~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~ 283 (293)
T PRK10532 213 AVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTI 283 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 44555 44566699999999999999999999999999999999999999999999999999988865443
No 25
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=97.80 E-value=0.00088 Score=58.46 Aligned_cols=116 Identities=16% Similarity=0.188 Sum_probs=75.9
Q ss_pred hHHHHHHHHHhcCCCch-hHHHHHhhhCchhhhhhhhhcccCCCCCCCCCCchHHHHHHHHHHHHH-HHHhHHHHHhhhc
Q 043307 57 AATLLGRLYYDKGGNSK-WMATFVQSAGFPILLPVLCCFSNGSRSTNKTDPKISTLVCLYVAFGLL-LTGDNMMYSYGLL 134 (248)
Q Consensus 57 ~~~LL~r~Yy~~gG~s~-W~~t~vqtagfPlll~~~~~~~~~~~~~~~~~p~~~~l~~~~~~lGvl-~a~~n~lYa~gl~ 134 (248)
....+.|....+-+... .+..+.-..|.++++|..+... + . ..+ .++....-+.+|++ ......+|.++.+
T Consensus 142 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~--~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 214 (260)
T TIGR00950 142 LGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLG-P--N---PQA-LSLQWGALLYLGLIGTALAYFLWNKGLT 214 (260)
T ss_pred HHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcC-C--C---CCc-chHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555554333322 3333444555555554444321 1 1 111 11222222333443 4567788999999
Q ss_pred ccchhhHHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHH
Q 043307 135 YLPLSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISA 179 (248)
Q Consensus 135 yLp~ST~sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~ 179 (248)
++|+++.+.+..+++++++++++++.+||+++.++.+.++...|.
T Consensus 215 ~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 215 LVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999988774
No 26
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=97.78 E-value=0.00029 Score=64.40 Aligned_cols=121 Identities=16% Similarity=0.165 Sum_probs=90.0
Q ss_pred ccchHHHHHHHHHhcCCCchhHHHHHhhhCchhhhhhhhhcccCCCCCCCCCCchHHHHHHHHHHHHHHHHhHHHHHhhh
Q 043307 54 GQSAATLLGRLYYDKGGNSKWMATFVQSAGFPILLPVLCCFSNGSRSTNKTDPKISTLVCLYVAFGLLLTGDNMMYSYGL 133 (248)
Q Consensus 54 G~~~~~LL~r~Yy~~gG~s~W~~t~vqtagfPlll~~~~~~~~~~~~~~~~~p~~~~l~~~~~~lGvl~a~~n~lYa~gl 133 (248)
+.+...+..|.. +-++|-.++.|..|..+--..++..+ ++. +|..++.....+..|++++..+.+|..|.
T Consensus 163 ~y~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~Gi~~~ia~~~y~~~~ 232 (290)
T TIGR00776 163 GYLVYVVVAKAF----GVDGLSVLLPQAIGMVIGGIIFNLGH-ILA-----KPLKKYAILLNILPGLMWGIGNFFYLFSA 232 (290)
T ss_pred HHHHHHHHHHHc----CCCcceehhHHHHHHHHHHHHHHHHH-hcc-----cchHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334445555532 25567677777775554333332222 111 23344455556669999999999999999
Q ss_pred c-ccchhhHHHHHhhhhHHHHHHHHHHhccccchHHH----HHHHHHHHHHHHHhc
Q 043307 134 L-YLPLSTYSLLCATQLAFNAFFSFFLNSQKFTPFIF----NSLVLLTISATLLAV 184 (248)
Q Consensus 134 ~-yLp~ST~sLi~sTqL~FTAiFs~li~~~kfT~~~i----nsvvLlt~g~~Ll~l 184 (248)
. ++++++.+.+.+...+.+.++++++.+|++++.++ .+.++...|+.+.++
T Consensus 233 ~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 233 QPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 9 99999999999999999999999999999999999 999999999988765
No 27
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=97.73 E-value=1.8e-05 Score=73.61 Aligned_cols=141 Identities=16% Similarity=0.148 Sum_probs=84.9
Q ss_pred hhhhhhcccchhHHHHHHHHHHHHhccchHHHHHHHHHhcCCCchhHHHHHhhhCchhhhhhhh-hcccCCCCCCCCCCc
Q 043307 29 QWRFLKLKHYKWWLRVILYVVCLLVGQSAATLLGRLYYDKGGNSKWMATFVQSAGFPILLPVLC-CFSNGSRSTNKTDPK 107 (248)
Q Consensus 29 ~~~~~~~~~~~~w~lv~~~~~~l~~G~~~~~LL~r~Yy~~gG~s~W~~t~vqtagfPlll~~~~-~~~~~~~~~~~~~p~ 107 (248)
+.+-.+.|+...-++..+++++.+.--.+...+.+-=-+..-.| -++| ++|.+. ..+.+..- -.+.+
T Consensus 28 ~qri~~d~p~~gl~l~~vs~ff~~~~vv~t~~~e~~p~e~a~~r----~l~~------mlit~pcliy~~~~v-~gp~g- 95 (346)
T KOG4510|consen 28 LQRISKDKPNLGLLLLTVSYFFNSCMVVSTKVLENDPMELASFR----LLVR------MLITYPCLIYYMQPV-IGPEG- 95 (346)
T ss_pred hhHhhcCCCccCceehhhHHHHhhHHHhhhhhhccChhHhhhhh----hhhe------hhhhheEEEEEeeee-ecCCC-
Confidence 34455558888888998987777666555555443333333333 0111 111111 11111100 00111
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhhhcccchhhHHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhc
Q 043307 108 ISTLVCLYVAFGLLLTGDNMMYSYGLLYLPLSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAV 184 (248)
Q Consensus 108 ~~~l~~~~~~lGvl~a~~n~lYa~gl~yLp~ST~sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll~l 184 (248)
.++.+++=-+.|. .+--.+| |++.|+|.+-.++|.-+...||++|++.++|||+|++-....++...|++|+.-
T Consensus 96 ~R~~LiLRg~mG~--tgvmlmy-ya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvR 169 (346)
T KOG4510|consen 96 KRKWLILRGFMGF--TGVMLMY-YALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVR 169 (346)
T ss_pred cEEEEEeehhhhh--hHHHHHH-HHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEec
Confidence 1111111111121 1112456 899999999999999999999999999999999999999999999999888753
No 28
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=97.69 E-value=0.0012 Score=53.24 Aligned_cols=125 Identities=19% Similarity=0.160 Sum_probs=96.6
Q ss_pred hHHHHHHHHHhc------CCCchhHHHHHhhhCchhhhhhhhhcccCCCCC----CCC--CCchHHHHHHHHHHHHHHHH
Q 043307 57 AATLLGRLYYDK------GGNSKWMATFVQSAGFPILLPVLCCFSNGSRST----NKT--DPKISTLVCLYVAFGLLLTG 124 (248)
Q Consensus 57 ~~~LL~r~Yy~~------gG~s~W~~t~vqtagfPlll~~~~~~~~~~~~~----~~~--~p~~~~l~~~~~~lGvl~a~ 124 (248)
.-..+.+.++.+ +.+..=+..+.+..++++++|+.++....+... ... ....++....-+..|++...
T Consensus 14 l~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (153)
T PF03151_consen 14 LRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFIFLLILSGLLAFL 93 (153)
T ss_pred HHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHHHHHHHHHHHHHH
Confidence 334455555555 333445778888999999999888764332111 011 01144677777778999999
Q ss_pred hHHHHHhhhcccchhhHHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Q 043307 125 DNMMYSYGLLYLPLSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATL 181 (248)
Q Consensus 125 ~n~lYa~gl~yLp~ST~sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~L 181 (248)
.|+....-+.+..+-|++++...|-+++.+++.++.++++|..++.++++.++|..+
T Consensus 94 ~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 94 YNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence 999999999999999999999999999999999999999999999999999999765
No 29
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=97.69 E-value=0.00073 Score=63.42 Aligned_cols=104 Identities=18% Similarity=0.258 Sum_probs=80.8
Q ss_pred HHhHHHHHhhhcccchhhHHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCCCCC-CCCCCcccch
Q 043307 123 TGDNMMYSYGLLYLPLSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADSENT-SGVSKGNYVI 201 (248)
Q Consensus 123 a~~n~lYa~gl~yLp~ST~sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll~l~~~s~~~-~~~~~~~y~l 201 (248)
+...+|| .|+.+..+|.|+.+--.-++|+++||.-+++++++..+|.++.....|.+.++..|-.... +-...+.-+.
T Consensus 98 ~gsslm~-vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~~d~s~iit 176 (372)
T KOG3912|consen 98 AGSSLMY-VGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPYTDYSSIIT 176 (372)
T ss_pred hhhHHHH-HHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCccccccchh
Confidence 4456777 9999999999999999999999999999999999999999999999999887765321111 1122345678
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 043307 202 GFLCTLGASATYSLYLSLLQLSFEKVIKKE 231 (248)
Q Consensus 202 Gf~~tL~Asalygl~l~L~ql~f~Kv~k~~ 231 (248)
|..+.+.|-...+.-...= ||.+++.
T Consensus 177 GdllIiiaqiivaiQ~v~E----ek~l~~~ 202 (372)
T KOG3912|consen 177 GDLLIIIAQIIVAIQMVCE----EKQLKKS 202 (372)
T ss_pred hhHHHHHHHHHHHHHHHHH----Hhhhhhc
Confidence 9999999999888744444 4455443
No 30
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=97.66 E-value=0.00016 Score=62.90 Aligned_cols=107 Identities=18% Similarity=0.167 Sum_probs=85.4
Q ss_pred HHHHHHhHHHHHhhhcccchhhHHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcc
Q 043307 119 GLLLTGDNMMYSYGLLYLPLSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADSENTSGVSKGN 198 (248)
Q Consensus 119 Gvl~a~~n~lYa~gl~yLp~ST~sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll~l~~~s~~~~~~~~~~ 198 (248)
..+++.+|.+.-+++.+.+..++... +.|.+.++++...+.+++++..+|-++.++..|......+++.++ ....+.
T Consensus 6 a~~~~~s~~l~~v~l~~~~~~~~~~~-~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~--~~~~g~ 82 (222)
T TIGR00803 6 IHIIFKQNNLVLIALGNLLAAGKQVT-QLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAK--TLMFGN 82 (222)
T ss_pred chHHHHhcchHHHHHhcccccceeee-hHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCcc--cccccc
Confidence 35678888888899999999999999 999999999999999999999999999999998887654443321 223346
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 043307 199 YVIGFLCTLGASATYSLYLSLLQLSFEKVIKKET 232 (248)
Q Consensus 199 y~lGf~~tL~Asalygl~l~L~ql~f~Kv~k~~t 232 (248)
.+.|..+.++|+...|+ .-.+.||..|+.+
T Consensus 83 ~~~g~~~~l~a~~~~~~----~~~y~e~~~k~~~ 112 (222)
T TIGR00803 83 PVVGLSAVLSALLSSGF----AGVYFEKILKDGD 112 (222)
T ss_pred HHHHHHHHHHHHHHHhh----hHHHHHHcccCCC
Confidence 77888888888888888 5555577766543
No 31
>PRK11689 aromatic amino acid exporter; Provisional
Probab=97.55 E-value=0.0018 Score=58.77 Aligned_cols=68 Identities=10% Similarity=0.068 Sum_probs=61.6
Q ss_pred HHHHHHHHhHHHHHhhhcccchhhHHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhc
Q 043307 117 AFGLLLTGDNMMYSYGLLYLPLSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAV 184 (248)
Q Consensus 117 ~lGvl~a~~n~lYa~gl~yLp~ST~sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll~l 184 (248)
..|+..+...++|.++++++|++..+.+...++++++++++++.+|++|+.++.+.++..+|..+.-.
T Consensus 220 ~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 220 LAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL 287 (295)
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence 34456777889999999999999999999999999999999999999999999999999999877543
No 32
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=97.52 E-value=0.00023 Score=67.00 Aligned_cols=166 Identities=17% Similarity=0.214 Sum_probs=112.7
Q ss_pred hHHHHHHHHHHHHhccchHHHHHHHHHhc--CCCchhHHHHHhhhCchhh-hhhhhhcccCCCCCCCCCCchHHHHHHHH
Q 043307 40 WWLRVILYVVCLLVGQSAATLLGRLYYDK--GGNSKWMATFVQSAGFPIL-LPVLCCFSNGSRSTNKTDPKISTLVCLYV 116 (248)
Q Consensus 40 ~w~lv~~~~~~l~~G~~~~~LL~r~Yy~~--gG~s~W~~t~vqtagfPll-l~~~~~~~~~~~~~~~~~p~~~~l~~~~~ 116 (248)
++....+++.+=.+. ..+..+.+-|=-+ |++=+|.-|.++.+-=-+. +....+ ..+++...+++....+++
T Consensus 14 ~~~~~~~~~~~w~~~-~v~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l-~~~~~~~~~~~~~~~~ll---- 87 (316)
T KOG1441|consen 14 KILRIGIAFAIWYVL-SVGVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVL-KLVPPSKISSKLPLRTLL---- 87 (316)
T ss_pred hhHHHHHHHHHHhhh-heeeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHh-cCCCCCccccccchHHHH----
Confidence 344555555554444 4555555555555 8888999888854432222 222222 122121111111233443
Q ss_pred HHHHHHHHhHHHHHhhhcccchhhHHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q 043307 117 AFGLLLTGDNMMYSYGLLYLPLSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADSENTSGVSK 196 (248)
Q Consensus 117 ~lGvl~a~~n~lYa~gl~yLp~ST~sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll~l~~~s~~~~~~~~ 196 (248)
-+|+..+....+=+.++.|.|||.+..+=++...||.++++++.++++++....+++....|.++-...+ .
T Consensus 88 pl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e---------~ 158 (316)
T KOG1441|consen 88 PLGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTE---------L 158 (316)
T ss_pred HHHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeecc---------c
Confidence 3456666677777789999999999999999999999999999999999999999998888877733321 2
Q ss_pred cccchhHHHHHHHHHHHHHHHHHH
Q 043307 197 GNYVIGFLCTLGASATYSLYLSLL 220 (248)
Q Consensus 197 ~~y~lGf~~tL~Asalygl~l~L~ 220 (248)
+-.+.|+++++++-+.+++-..+.
T Consensus 159 ~fn~~G~i~a~~s~~~~al~~I~~ 182 (316)
T KOG1441|consen 159 SFNLFGFISAMISNLAFALRNILS 182 (316)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHH
Confidence 346899999999999999977777
No 33
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=97.36 E-value=0.0053 Score=55.61 Aligned_cols=64 Identities=11% Similarity=0.111 Sum_probs=59.1
Q ss_pred HHHhHHHHHhhhcccchhhHHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcc
Q 043307 122 LTGDNMMYSYGLLYLPLSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVN 185 (248)
Q Consensus 122 ~a~~n~lYa~gl~yLp~ST~sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll~l~ 185 (248)
......+|.++.+++|+++.+++...++++++++++++.+|++|+.++.+.++...|..++...
T Consensus 223 s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~ 286 (292)
T PRK11272 223 SIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLG 286 (292)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 4566789999999999999999999999999999999999999999999999999999887543
No 34
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=97.32 E-value=0.00029 Score=63.38 Aligned_cols=104 Identities=22% Similarity=0.395 Sum_probs=88.6
Q ss_pred HHHHHHHhHHHHHhhhcccchhhHHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCCCCCCCCCCc
Q 043307 118 FGLLLTGDNMMYSYGLLYLPLSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADSENTSGVSKG 197 (248)
Q Consensus 118 lGvl~a~~n~lYa~gl~yLp~ST~sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll~l~~~s~~~~~~~~~ 197 (248)
.-++|...||+|-.+++.+.+|..+-|.+-.-+|.-+++.++++.||.-+.+.|+++..-|.++.+--|.. .+
T Consensus 59 F~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~-------~a 131 (290)
T KOG4314|consen 59 FSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNE-------HA 131 (290)
T ss_pred eEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccch-------hh
Confidence 34788899999999999999999999999999999999999999999999999999999988887633322 34
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 043307 198 NYVIGFLCTLGASATYSLYLSLLQLSFEKVIKKET 232 (248)
Q Consensus 198 ~y~lGf~~tL~Asalygl~l~L~ql~f~Kv~k~~t 232 (248)
..++|..|+++.+...++|= +.|+.++...+
T Consensus 132 ~e~iGi~~AV~SA~~aAlYK----V~FK~~iGnAn 162 (290)
T KOG4314|consen 132 DEIIGIACAVGSAFMAALYK----VLFKMFIGNAN 162 (290)
T ss_pred hhhhhHHHHHHHHHHHHHHH----HHHHHHhccCc
Confidence 46999999999999988854 45588776654
No 35
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=97.32 E-value=0.006 Score=55.47 Aligned_cols=71 Identities=13% Similarity=0.142 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHhHHHHHhhhcccchhhHHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh
Q 043307 113 CLYVAFGLLLTGDNMMYSYGLLYLPLSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLA 183 (248)
Q Consensus 113 ~~~~~lGvl~a~~n~lYa~gl~yLp~ST~sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll~ 183 (248)
...+..|+..+.-.++|.++++++|+++.+++...+++++.++++++.+|++|+.++.+.++..++..+..
T Consensus 214 ~~~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~ 284 (296)
T PRK15430 214 LLLIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFV 284 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 34444566677888999999999999999999999999999999999999999999999999988877654
No 36
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=97.31 E-value=0.0027 Score=59.25 Aligned_cols=115 Identities=11% Similarity=0.099 Sum_probs=90.7
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhhhcccchhhHHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCC
Q 043307 108 ISTLVCLYVAFGLLLTGDNMMYSYGLLYLPLSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNAD 187 (248)
Q Consensus 108 ~~~l~~~~~~lGvl~a~~n~lYa~gl~yLp~ST~sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll~l~~~ 187 (248)
.||.+...+.-+++++.|=.+|-++..+=-+--.|+=+.-...++.+.+.+..|||+++.|+.||++.++|+.....+.+
T Consensus 68 ~p~~~~~~~l~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g 147 (293)
T COG2962 68 QPKTLLMLALTALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLG 147 (293)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcC
Confidence 35888888999999999999999999986666668888999999999999999999999999999999999998777655
Q ss_pred CCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHhhccc-ceeeehhhh
Q 043307 188 SENTSGVSKGNYVIGFLCTLGASATYSLYLSLLQLSFEKVIKKE-TFSVVMDMQ 240 (248)
Q Consensus 188 s~~~~~~~~~~y~lGf~~tL~Asalygl~l~L~ql~f~Kv~k~~-t~~~vlemQ 240 (248)
+= . +.+++=|+.||+|..+ ||.+|-+ -..+.+|+-
T Consensus 148 ~l---------p----wval~la~sf~~Ygl~-----RK~~~v~a~~g~~lE~l 183 (293)
T COG2962 148 SL---------P----WVALALALSFGLYGLL-----RKKLKVDALTGLTLETL 183 (293)
T ss_pred CC---------c----HHHHHHHHHHHHHHHH-----HHhcCCchHHhHHHHHH
Confidence 41 2 3445556667776544 6666533 445566643
No 37
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=97.28 E-value=0.00074 Score=60.74 Aligned_cols=70 Identities=14% Similarity=0.263 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHhHHHHHhhhcccchhhHHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH
Q 043307 113 CLYVAFGLLLTGDNMMYSYGLLYLPLSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLL 182 (248)
Q Consensus 113 ~~~~~lGvl~a~~n~lYa~gl~yLp~ST~sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll 182 (248)
..-...++..+....+|.++++++|+++.+...+.+++++.++++++.+|+.|+.++.+.++..+|..++
T Consensus 212 ~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l~ 281 (281)
T TIGR03340 212 PSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVVL 281 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHhC
Confidence 3334445667778889999999999999999999999999999999999999999999999999998763
No 38
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.27 E-value=0.0028 Score=58.63 Aligned_cols=113 Identities=19% Similarity=0.158 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhcccchhhHH-HHHhhhhHHHHHHHHHHhccccchHH----HHHHHHHHHHHHHHh
Q 043307 109 STLVCLYVAFGLLLTGDNMMYSYGLLYLPLSTYS-LLCATQLAFNAFFSFFLNSQKFTPFI----FNSLVLLTISATLLA 183 (248)
Q Consensus 109 ~~l~~~~~~lGvl~a~~n~lYa~gl~yLp~ST~s-Li~sTqL~FTAiFs~li~~~kfT~~~----insvvLlt~g~~Ll~ 183 (248)
++.+..++.-|+.|+..+.....+.+++-+|..- +-...||+.|+++++++.+|--+... +.|++++.+|+++.+
T Consensus 42 ~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts 121 (269)
T PF06800_consen 42 GTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTS 121 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhc
Confidence 4888999999999999999999999988776433 33489999999999999999777554 459999999999977
Q ss_pred ccCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHH
Q 043307 184 VNADSENTSGVSKGNYVIGFLCTLGASATYSLYLSLLQL 222 (248)
Q Consensus 184 l~~~s~~~~~~~~~~y~lGf~~tL~Asalygl~l~L~ql 222 (248)
.++++++.+ +++++..-|....+.+++.|.+|....+.
T Consensus 122 ~~~~~~~~~-~~~~~~~kgi~~Ll~stigy~~Y~~~~~~ 159 (269)
T PF06800_consen 122 YQDKKSDKS-SSKSNMKKGILALLISTIGYWIYSVIPKA 159 (269)
T ss_pred ccccccccc-ccccchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 766554422 23455667899999999999999888754
No 39
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=97.14 E-value=0.0051 Score=55.66 Aligned_cols=64 Identities=11% Similarity=-0.073 Sum_probs=57.9
Q ss_pred HHHHhHHHHHhhhcccchhhHHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhc
Q 043307 121 LLTGDNMMYSYGLLYLPLSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAV 184 (248)
Q Consensus 121 l~a~~n~lYa~gl~yLp~ST~sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll~l 184 (248)
.+..-|.++.+++++++++|.+++...+.++++++++++.+|++|..++.+.++..+|..+...
T Consensus 230 ~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~ 293 (302)
T TIGR00817 230 FFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSR 293 (302)
T ss_pred HHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHH
Confidence 3445567888899999999999999999999999999999999999999999999999988654
No 40
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.02 E-value=0.0079 Score=49.33 Aligned_cols=69 Identities=16% Similarity=0.294 Sum_probs=59.8
Q ss_pred HHHHHHhHHHHHhhhcccchhh-HHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCC
Q 043307 119 GLLLTGDNMMYSYGLLYLPLST-YSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNAD 187 (248)
Q Consensus 119 Gvl~a~~n~lYa~gl~yLp~ST-~sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll~l~~~ 187 (248)
-+.++..=++.+.+++++|.|+ |++....-.+.+++.+.++.+|++|..++..+++..+|.+++-+.+.
T Consensus 37 i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~~ 106 (120)
T PRK10452 37 LVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTR 106 (120)
T ss_pred HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCCC
Confidence 3556666688899999999997 56667889999999999999999999999999999999998876553
No 41
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.00 E-value=0.0099 Score=56.72 Aligned_cols=109 Identities=11% Similarity=0.157 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhcccchhh-HHHHHhhhhHHHHHHHHHHhcc-------ccchHHHHHHHHHHHHHH
Q 043307 109 STLVCLYVAFGLLLTGDNMMYSYGLLYLPLST-YSLLCATQLAFNAFFSFFLNSQ-------KFTPFIFNSLVLLTISAT 180 (248)
Q Consensus 109 ~~l~~~~~~lGvl~a~~n~lYa~gl~yLp~ST-~sLi~sTqL~FTAiFs~li~~~-------kfT~~~insvvLlt~g~~ 180 (248)
++.+...+..|++++..|..+..+.+|+-+|. ..+-..+|++++.++..++..+ +-....+.+++++++|.+
T Consensus 70 ~~~~~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~ 149 (345)
T PRK13499 70 GSTLLPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVA 149 (345)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHH
Confidence 47778889999999999999999999999985 4566789999999999888542 222457889999999999
Q ss_pred HHhc----cCCCCCCCCCCCcccchhHHHHHHHHHHHHHHH
Q 043307 181 LLAV----NADSENTSGVSKGNYVIGFLCTLGASATYSLYL 217 (248)
Q Consensus 181 Ll~l----~~~s~~~~~~~~~~y~lGf~~tL~Asalygl~l 217 (248)
+.+. .+..++.+++++++..-|.+.++.+.+.|+.+.
T Consensus 150 l~s~Ag~~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~ 190 (345)
T PRK13499 150 IVGRAGQLKERKMGIKKAEEFNLKKGLILAVMSGIFSACFS 190 (345)
T ss_pred HHHHhhhhcccccccccccccchHhHHHHHHHHHHHHHHHH
Confidence 9887 544332221345677889999999999999988
No 42
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=96.88 E-value=0.044 Score=49.80 Aligned_cols=65 Identities=11% Similarity=-0.043 Sum_probs=58.4
Q ss_pred HHHhHHHHHhhhcccchhhHHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccC
Q 043307 122 LTGDNMMYSYGLLYLPLSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNA 186 (248)
Q Consensus 122 ~a~~n~lYa~gl~yLp~ST~sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll~l~~ 186 (248)
.+..-++|..+++++++++.+.+...++++++++++++.+|++|..++.+.++..+|+.+...+.
T Consensus 225 t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~ 289 (299)
T PRK11453 225 TIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGL 289 (299)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcch
Confidence 44566788899999999999999999999999999999999999999999999999988755544
No 43
>COG2510 Predicted membrane protein [Function unknown]
Probab=96.83 E-value=0.0026 Score=53.44 Aligned_cols=111 Identities=15% Similarity=0.143 Sum_probs=79.5
Q ss_pred CchhHHHHHhhhCchhhhhhhhhcccCCCCCCCCCCchHHHHHHHHHHHHHHHHhHHHHHhhhcccchhhHHHHHhhhhH
Q 043307 71 NSKWMATFVQSAGFPILLPVLCCFSNGSRSTNKTDPKISTLVCLYVAFGLLLTGDNMMYSYGLLYLPLSTYSLLCATQLA 150 (248)
Q Consensus 71 ~s~W~~t~vqtagfPlll~~~~~~~~~~~~~~~~~p~~~~l~~~~~~lGvl~a~~n~lYa~gl~yLp~ST~sLi~sTqL~ 150 (248)
-.+=++|.+.+----+.+..+++...+.....+.. +|-..--+.-|+..++.-++|..+++.=++|--.=+-.+..+
T Consensus 29 vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~---~k~~lflilSGla~glswl~Yf~ALk~G~as~VvPldk~svv 105 (140)
T COG2510 29 VDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIG---PKSWLFLILSGLAGGLSWLLYFRALKKGKASRVVPLDKTSVV 105 (140)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHhcCceecccccC---cceehhhhHHHHHHHHHHHHHHHHHhcCCcceEEEcccccHH
Confidence 34556666666433333333333322222111112 233333445578888899999999999999988889999999
Q ss_pred HHHHHHHHHhccccchHHHHHHHHHHHHHHHHhc
Q 043307 151 FNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAV 184 (248)
Q Consensus 151 FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll~l 184 (248)
|+++|+.+..+||.|..+|..++|.++|++++++
T Consensus 106 l~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 106 LAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 9999999999999999999999999999998754
No 44
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=96.72 E-value=0.004 Score=57.92 Aligned_cols=71 Identities=25% Similarity=0.313 Sum_probs=63.5
Q ss_pred HHHHHhHHHHHhhhcccchhhHHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCCCC
Q 043307 120 LLLTGDNMMYSYGLLYLPLSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADSEN 190 (248)
Q Consensus 120 vl~a~~n~lYa~gl~yLp~ST~sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll~l~~~s~~ 190 (248)
++++.++.+-..++.+.|++.-+=+.+.++++|++++.++++||+++.-+.++++..+|.+++......++
T Consensus 58 ~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~ 128 (300)
T PF05653_consen 58 LLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEE 128 (300)
T ss_pred HHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCC
Confidence 45677778888999999999999999999999999999999999999999999999999998877654443
No 45
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=96.23 E-value=0.059 Score=44.42 Aligned_cols=67 Identities=15% Similarity=0.122 Sum_probs=55.6
Q ss_pred HHHHHhHHHHHhhhcccchhhHHHHHhhhhHHHHHHHHH--HhccccchHHHHHHHHHHHHHHHHhccC
Q 043307 120 LLLTGDNMMYSYGLLYLPLSTYSLLCATQLAFNAFFSFF--LNSQKFTPFIFNSLVLLTISATLLAVNA 186 (248)
Q Consensus 120 vl~a~~n~lYa~gl~yLp~ST~sLi~sTqL~FTAiFs~l--i~~~kfT~~~insvvLlt~g~~Ll~l~~ 186 (248)
+.++..-+++.++++.+|+|...=+.+.-.+++++.++. +.+|++|+.++.++++..+|..+++.++
T Consensus 56 ~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~ 124 (129)
T PRK02971 56 AGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT 124 (129)
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence 445666678888999999999887766666778888885 7999999999999999999999976543
No 46
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=96.18 E-value=0.23 Score=43.00 Aligned_cols=75 Identities=20% Similarity=0.300 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHH-HhHHHHHhhhcccchhhHHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcc
Q 043307 111 LVCLYVAFGLLLT-GDNMMYSYGLLYLPLSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVN 185 (248)
Q Consensus 111 l~~~~~~lGvl~a-~~n~lYa~gl~yLp~ST~sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll~l~ 185 (248)
-......+|++.. ....++.+++...|++..+.+..++.+++.++++++.+|++++.++.+.++...|..+...+
T Consensus 213 ~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 213 AWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 3334444455544 47778889999999999999999999999999999999999999999998888888886544
No 47
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=96.07 E-value=0.055 Score=43.70 Aligned_cols=63 Identities=19% Similarity=0.153 Sum_probs=56.2
Q ss_pred HHHHHhHHHHHhhhcccchhh-HHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH
Q 043307 120 LLLTGDNMMYSYGLLYLPLST-YSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLL 182 (248)
Q Consensus 120 vl~a~~n~lYa~gl~yLp~ST-~sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll 182 (248)
+.++..-++.+.+++++|+++ |++-...-.+.+++.+.++.+|++|+.++.++.+..+|.+++
T Consensus 43 ~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 43 AAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 455566688889999999986 788888999999999999999999999999999999999886
No 48
>PRK11431 multidrug efflux system protein; Provisional
Probab=95.98 E-value=0.071 Score=42.70 Aligned_cols=65 Identities=17% Similarity=0.200 Sum_probs=56.3
Q ss_pred HHHHHhHHHHHhhhcccchhh-HHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhc
Q 043307 120 LLLTGDNMMYSYGLLYLPLST-YSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAV 184 (248)
Q Consensus 120 vl~a~~n~lYa~gl~yLp~ST-~sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll~l 184 (248)
+.++..=++.+.+++++|.++ |++-...-.+.+++.++++.+||+|+.++.++.+..+|.+.+-+
T Consensus 37 ~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 37 TAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 344555577889999999986 77888899999999999999999999999999999999988744
No 49
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=95.96 E-value=0.089 Score=42.39 Aligned_cols=65 Identities=11% Similarity=0.243 Sum_probs=54.9
Q ss_pred HHHhHHHHHhhhcccchhh-HHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccC
Q 043307 122 LTGDNMMYSYGLLYLPLST-YSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNA 186 (248)
Q Consensus 122 ~a~~n~lYa~gl~yLp~ST-~sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll~l~~ 186 (248)
++..=++.+.+++++|.|+ |++-...-.+.+++.+.++.+|++|..++.++++..+|.+++.+.+
T Consensus 40 ~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 40 YCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3344466788999999987 5666778899999999999999999999999999999999986543
No 50
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=95.88 E-value=0.084 Score=42.69 Aligned_cols=61 Identities=16% Similarity=0.246 Sum_probs=54.8
Q ss_pred hHHHHHhhhcccchhh-HHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcc
Q 043307 125 DNMMYSYGLLYLPLST-YSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVN 185 (248)
Q Consensus 125 ~n~lYa~gl~yLp~ST-~sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll~l~ 185 (248)
.=.+.+.+++++|+++ |++-...-.+-|++.++++.+|++++.++.++.|+.+|.+.+-+.
T Consensus 43 sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 43 SFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred HHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence 3377889999999997 788889999999999999999999999999999999999887544
No 51
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=95.45 E-value=0.099 Score=49.14 Aligned_cols=66 Identities=14% Similarity=0.036 Sum_probs=57.2
Q ss_pred HHHHHHHhHHHHHhhhcccchhhHHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh
Q 043307 118 FGLLLTGDNMMYSYGLLYLPLSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLA 183 (248)
Q Consensus 118 lGvl~a~~n~lYa~gl~yLp~ST~sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll~ 183 (248)
-|+.+...|..-.+++.++++.|+++.+..|.+++.++++++.++++|+.++.+.++..+|..+..
T Consensus 282 s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs 347 (350)
T PTZ00343 282 SGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYS 347 (350)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHh
Confidence 345555555554479999999999999999999999999999999999999999999999988754
No 52
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=95.15 E-value=0.044 Score=47.61 Aligned_cols=125 Identities=13% Similarity=0.097 Sum_probs=83.0
Q ss_pred HhccchHHHHHHHHHhcCCCchhHHHHHhhhCchhhhhhhhhcc--cCCCCCCCCCCc---hHHHHHHHHHHHHHHHHhH
Q 043307 52 LVGQSAATLLGRLYYDKGGNSKWMATFVQSAGFPILLPVLCCFS--NGSRSTNKTDPK---ISTLVCLYVAFGLLLTGDN 126 (248)
Q Consensus 52 ~~G~~~~~LL~r~Yy~~gG~s~W~~t~vqtagfPlll~~~~~~~--~~~~~~~~~~p~---~~~l~~~~~~lGvl~a~~n 126 (248)
+.+.+...=+...|.+++-+++=..-|.|...-|+..++..+.- ..........+. ++.. ...+++..+.+.
T Consensus 90 ~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~a~~~ 166 (222)
T TIGR00803 90 VLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFFIGYPTA---VWIVGLLNVGGG 166 (222)
T ss_pred HHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhcccchhhccCcccCCchH---HHHHHHHHHhcC
Confidence 33344445567788888744432446667777777666642211 111110011111 1222 223345566777
Q ss_pred HHHHhhhcccchhhHHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHH
Q 043307 127 MMYSYGLLYLPLSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISA 179 (248)
Q Consensus 127 ~lYa~gl~yLp~ST~sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~ 179 (248)
.+.++-++|.+..+.+.+.++..+++++.++++.++++|+.++.++.+...|.
T Consensus 167 ~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~ 219 (222)
T TIGR00803 167 LCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLAT 219 (222)
T ss_pred ceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeee
Confidence 78889999999999999999999999999999999999999999998877664
No 53
>PRK13499 rhamnose-proton symporter; Provisional
Probab=95.06 E-value=0.43 Score=45.69 Aligned_cols=117 Identities=13% Similarity=0.098 Sum_probs=77.6
Q ss_pred CCCchhHHHHHhhhCch----hhhhhhhhcccCC-CC-----CC-CCCCchHHHHHHHHHHHHHHHHhHHHHHhhhcccc
Q 043307 69 GGNSKWMATFVQSAGFP----ILLPVLCCFSNGS-RS-----TN-KTDPKISTLVCLYVAFGLLLTGDNMMYSYGLLYLP 137 (248)
Q Consensus 69 gG~s~W~~t~vqtagfP----lll~~~~~~~~~~-~~-----~~-~~~p~~~~l~~~~~~lGvl~a~~n~lYa~gl~yLp 137 (248)
.|.+.|-..+.|..|-= +.-+.++....++ ++ +. .++|...|-.+.++.-|++++.+|+.|..|-..++
T Consensus 206 ~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g 285 (345)
T PRK13499 206 LGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLG 285 (345)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 56777878888876322 2223333322111 11 11 12233456777889999999999999999999986
Q ss_pred hhhHHH---HH-hhhhHHHHHHHHHHhccccc------hHHHHHHHHHHHHHHHHhccC
Q 043307 138 LSTYSL---LC-ATQLAFNAFFSFFLNSQKFT------PFIFNSLVLLTISATLLAVNA 186 (248)
Q Consensus 138 ~ST~sL---i~-sTqL~FTAiFs~li~~~kfT------~~~insvvLlt~g~~Ll~l~~ 186 (248)
+++... +. |+-.++..+=.. +.||+=+ +..+..++++.+|+++++++.
T Consensus 286 ~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~~ 343 (345)
T PRK13499 286 AQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANIVGLGN 343 (345)
T ss_pred CccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHHHhhcc
Confidence 664433 33 666666666666 4777666 788888899999998888764
No 54
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=95.01 E-value=0.18 Score=47.01 Aligned_cols=73 Identities=15% Similarity=0.200 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHHHHHHHhHH-HHHhhhcccchhhHHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Q 043307 108 ISTLVCLYVAFGLLLTGDNM-MYSYGLLYLPLSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISAT 180 (248)
Q Consensus 108 ~~~l~~~~~~lGvl~a~~n~-lYa~gl~yLp~ST~sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~ 180 (248)
.|.++.+....|++..+--| +=..++..+|.++|+++.+.+.++.|+-..++..|.+|+.||.++++...+++
T Consensus 205 ~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsa 278 (292)
T COG5006 205 SPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASA 278 (292)
T ss_pred ChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 57888899999998776554 33468999999999999999999999999999999999999999998887766
No 55
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.98 E-value=0.32 Score=46.09 Aligned_cols=100 Identities=17% Similarity=0.246 Sum_probs=78.6
Q ss_pred HHHHHHhHHHHHhhhcccchhhHHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcc
Q 043307 119 GLLLTGDNMMYSYGLLYLPLSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADSENTSGVSKGN 198 (248)
Q Consensus 119 Gvl~a~~n~lYa~gl~yLp~ST~sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll~l~~~s~~~~~~~~~~ 198 (248)
-+++.++=+-=..+++|+|+.+|.++=-.-.+++|+-=..+.+.|++...+.|+++..+|+...+..|.+.+
T Consensus 84 ~~lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf~-------- 155 (314)
T KOG1444|consen 84 SLLFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSFN-------- 155 (314)
T ss_pred HHHHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccceec--------
Confidence 344444444455789999999999999999999999999999999999999999999999988766665432
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 043307 199 YVIGFLCTLGASATYSLYLSLLQLSFEKVIKKE 231 (248)
Q Consensus 199 y~lGf~~tL~Asalygl~l~L~ql~f~Kv~k~~ 231 (248)
..|..+.+...+.-..+...+ ||.++..
T Consensus 156 -~~gY~w~~~n~~~~a~~~v~~----kk~vd~~ 183 (314)
T KOG1444|consen 156 -LRGYSWALANCLTTAAFVVYV----KKSVDSA 183 (314)
T ss_pred -chhHHHHHHHHHHHHHHHHHH----HHhhccc
Confidence 237888888877777655555 7766543
No 56
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=94.84 E-value=0.4 Score=45.34 Aligned_cols=176 Identities=14% Similarity=0.187 Sum_probs=126.0
Q ss_pred ccchhHHHHHHHHHHHHhccchHHHHHHHHHhcCCCc--hhHHHHHhhhCchhhhhhh-hhcccCCCCCCCCCCchHHHH
Q 043307 36 KHYKWWLRVILYVVCLLVGQSAATLLGRLYYDKGGNS--KWMATFVQSAGFPILLPVL-CCFSNGSRSTNKTDPKISTLV 112 (248)
Q Consensus 36 ~~~~~w~lv~~~~~~l~~G~~~~~LL~r~Yy~~gG~s--~W~~t~vqtagfPlll~~~-~~~~~~~~~~~~~~p~~~~l~ 112 (248)
.+..+|.-..+|+.-++.+-..---+..+-|+.-|=| -|.-|++|-.=....-... ..+..++| --|+.
T Consensus 36 s~kpkw~QFlic~~g~Ff~Yl~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~~~~~k~r----~iP~r---- 107 (367)
T KOG1582|consen 36 SDKPKWTQFLICSAGVFFLYLVYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQLIQTKRR----VIPWR---- 107 (367)
T ss_pred ccCchhhhHHHHHhHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHhhhheEEEeecccce----ecchh----
Confidence 3455688888888877777777777777777776666 7999999953221111111 11111111 22332
Q ss_pred HHHHHHHHHHHHhHHHHHhhhcccchhhHHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCCCCCC
Q 043307 113 CLYVAFGLLLTGDNMMYSYGLLYLPLSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADSENTS 192 (248)
Q Consensus 113 ~~~~~lGvl~a~~n~lYa~gl~yLp~ST~sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll~l~~~s~~~~ 192 (248)
.|..+..+....--|-.-++.||..-|--+.-.++++=..+-+.||-++|-...-..|-.++.+|.++..+-|+...|
T Consensus 108 -tY~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sP- 185 (367)
T KOG1582|consen 108 -TYVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSP- 185 (367)
T ss_pred -HhhhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccCC-
Confidence 466666665555566667888888888888889999999999999999999999999999999999998887765443
Q ss_pred CCCCcccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 043307 193 GVSKGNYVIGFLCTLGASATYSLYLSLLQLSFE 225 (248)
Q Consensus 193 ~~~~~~y~lGf~~tL~Asalygl~l~L~ql~f~ 225 (248)
+-..+|..+.-+|=..=+++.-+-|-.|+
T Consensus 186 ----NF~~~Gv~mIsgALl~DA~iGNvQEk~m~ 214 (367)
T KOG1582|consen 186 ----NFNLIGVMMISGALLADAVIGNVQEKAMK 214 (367)
T ss_pred ----CcceeeHHHHHHHHHHHHHhhHHHHHHHh
Confidence 34678999998888888887777755554
No 57
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=94.81 E-value=0.09 Score=49.47 Aligned_cols=118 Identities=15% Similarity=0.175 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHhHHHHHhhhc-ccchhhHHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCCCCCC
Q 043307 114 LYVAFGLLLTGDNMMYSYGLL-YLPLSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADSENTS 192 (248)
Q Consensus 114 ~~~~lGvl~a~~n~lYa~gl~-yLp~ST~sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll~l~~~s~~~~ 192 (248)
-|+..=++...-|..=++++. +.|.-..-+.=+..+.-|.+.+.+++++|-+..|+.||+++|+|.++-.+.++.|-.+
T Consensus 66 ~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~ 145 (330)
T KOG1583|consen 66 DYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRS 145 (330)
T ss_pred hhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhh
Confidence 344444555566666666665 4555555566677788899999999999999999999999999999987766554321
Q ss_pred -------C---CCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 043307 193 -------G---VSKGNYVIGFLCTLGASATYSLYLSLLQLSFEKVIKKE 231 (248)
Q Consensus 193 -------~---~~~~~y~lGf~~tL~Asalygl~l~L~ql~f~Kv~k~~ 231 (248)
+ .+-....+|+.+-..|..+.+....--|..|||.-|..
T Consensus 146 ~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~ 194 (330)
T KOG1583|consen 146 KLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYGKHW 194 (330)
T ss_pred hhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 1 11223456887777788888877777888999988754
No 58
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=93.85 E-value=0.26 Score=38.05 Aligned_cols=55 Identities=15% Similarity=0.107 Sum_probs=33.5
Q ss_pred HHHHhHHHHHhhhcccchhhH-HHHHhhhhHHHHHHHHHHhccccchHHHHHHHHH
Q 043307 121 LLTGDNMMYSYGLLYLPLSTY-SLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLL 175 (248)
Q Consensus 121 l~a~~n~lYa~gl~yLp~ST~-sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLl 175 (248)
.++..-++++.+++++|.|+. .+....-.+.+++.+.++.+|++|+.++.++.+.
T Consensus 38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 566666899999999999985 6667788999999999999999999999998763
No 59
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=93.73 E-value=1.1 Score=43.12 Aligned_cols=164 Identities=15% Similarity=0.217 Sum_probs=102.8
Q ss_pred HHHHHHHHHhccchHHHHHHHH--HhcCCCchhHHHHHhhhCchhhhhhhhhcccCCCC--C-CCCCCchHHHHHHHHHH
Q 043307 44 VILYVVCLLVGQSAATLLGRLY--YDKGGNSKWMATFVQSAGFPILLPVLCCFSNGSRS--T-NKTDPKISTLVCLYVAF 118 (248)
Q Consensus 44 v~~~~~~l~~G~~~~~LL~r~Y--y~~gG~s~W~~t~vqtagfPlll~~~~~~~~~~~~--~-~~~~p~~~~l~~~~~~l 118 (248)
+++-+++-.+|..++ +-+| |+|=-+=+|=+.|+--+=|.-++.|+......-+. + -...| ...+...+..
T Consensus 5 ii~Gii~h~iGg~~~---~sfy~P~kkvk~WsWEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~--~~~l~~~~l~ 79 (344)
T PF06379_consen 5 IILGIIFHAIGGFAS---GSFYVPFKKVKGWSWESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATP--ASTLFWTFLF 79 (344)
T ss_pred HHHHHHHHHHHHHHh---hhhccchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCC--hhHHHHHHHH
Confidence 344455555553322 2233 33433447888888777788888887665432222 0 01112 1345556778
Q ss_pred HHHHHHhHHHHHhhhcccchhhHHHHHhhhhHHHHHHHHHH---hc--------cccchHHHHHHHHHHHHHHHHhc---
Q 043307 119 GLLLTGDNMMYSYGLLYLPLSTYSLLCATQLAFNAFFSFFL---NS--------QKFTPFIFNSLVLLTISATLLAV--- 184 (248)
Q Consensus 119 Gvl~a~~n~lYa~gl~yLp~ST~sLi~sTqL~FTAiFs~li---~~--------~kfT~~~insvvLlt~g~~Ll~l--- 184 (248)
|++++..++.|..+..||-+|. -.+--+..+++|.-++ .. ++-...++..+++..+|.++.+.
T Consensus 80 G~lWGIGgltfGl~mryLGvSL---G~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~ 156 (344)
T PF06379_consen 80 GVLWGIGGLTFGLAMRYLGVSL---GQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGS 156 (344)
T ss_pred HHHHhcchhhHhHHHHHHhHHH---HHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHH
Confidence 9999999999999999999864 3344455555555444 12 23345788999999999998863
Q ss_pred cCCCCCCCCCCCcccchhHHHHHHHHHHHHH
Q 043307 185 NADSENTSGVSKGNYVIGFLCTLGASATYSL 215 (248)
Q Consensus 185 ~~~s~~~~~~~~~~y~lGf~~tL~Asalygl 215 (248)
-.+.|..++.++.+...|.+.++.+.++++.
T Consensus 157 ~Ke~~~~~~~~efn~~kGl~iAv~sGv~Sa~ 187 (344)
T PF06379_consen 157 MKEKELGEEAKEFNFKKGLIIAVLSGVMSAC 187 (344)
T ss_pred hhhhhhccchhhhhhhhhHHHHHHHHHHHHH
Confidence 2233333445566788899999888766665
No 60
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=93.27 E-value=0.64 Score=44.24 Aligned_cols=144 Identities=15% Similarity=0.080 Sum_probs=96.5
Q ss_pred cchhHHHHHHHHHHHHhccchHHHHHHHHHhcCCCchhHHHHHhhhCchhhhhhhhhcccCCCCCCCCCCchHHHHHHHH
Q 043307 37 HYKWWLRVILYVVCLLVGQSAATLLGRLYYDKGGNSKWMATFVQSAGFPILLPVLCCFSNGSRSTNKTDPKISTLVCLYV 116 (248)
Q Consensus 37 ~~~~w~lv~~~~~~l~~G~~~~~LL~r~Yy~~gG~s~W~~t~vqtagfPlll~~~~~~~~~~~~~~~~~p~~~~l~~~~~ 116 (248)
+....+++++..++-.+ +..+... +.++-++.=+..++..-|+.+..|...+..++.-+ .-++..+.....+
T Consensus 166 ~i~GDll~l~~a~lya~----~nV~~E~-~v~~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~---~~~w~~~~~~~~v 237 (334)
T PF06027_consen 166 PILGDLLALLGAILYAV----SNVLEEK-LVKKAPRVEFLGMLGLFGFIISGIQLAILERSGIE---SIHWTSQVIGLLV 237 (334)
T ss_pred cchhHHHHHHHHHHHHH----HHHHHHH-hcccCCHHHHHHHHHHHHHHHHHHHHHheehhhhh---ccCCChhhHHHHH
Confidence 34445555554444333 3344553 34455555566889999999988877765432211 1122234444444
Q ss_pred HHHHHHHHhHHHHHhhhcccchhhHHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCC
Q 043307 117 AFGLLLTGDNMMYSYGLLYLPLSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADS 188 (248)
Q Consensus 117 ~lGvl~a~~n~lYa~gl~yLp~ST~sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll~l~~~s 188 (248)
..++.......+-...+..-++..+++=..|--.++.++..++.++|+++..+.|.++..+|.++..+.+..
T Consensus 238 ~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~ 309 (334)
T PF06027_consen 238 GYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESP 309 (334)
T ss_pred HHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCc
Confidence 444444455555567778888888888888888999999999999999999999999999999998776543
No 61
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=91.55 E-value=1.9 Score=40.39 Aligned_cols=158 Identities=23% Similarity=0.295 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHhcCCCchhHHHHHhhhCchhhhhhhhhcccCCCCCCCCCCchHHHHHHHHHHHHH
Q 043307 42 LRVILYVVCLLVGQSAATLLGRLYYDKGGNSKWMATFVQSAGFPILLPVLCCFSNGSRSTNKTDPKISTLVCLYVAFGLL 121 (248)
Q Consensus 42 ~lv~~~~~~l~~G~~~~~LL~r~Yy~~gG~s~W~~t~vqtagfPlll~~~~~~~~~~~~~~~~~p~~~~l~~~~~~lGvl 121 (248)
+.+.++++.+=.|.+.+..| |.+-| .|--|++..+-=-+++.++ +.|++ +| -..+.. + .-+..|+-
T Consensus 15 ~~ll~amvsiq~Gas~Ak~L----FP~vG--~~g~t~lRl~~aaLIll~l-~RPwr-~r--~~~~~~-~---~~~~yGvs 80 (292)
T COG5006 15 LALLVAMVSIQSGASFAKSL----FPLVG--AAGVTALRLAIAALILLAL-FRPWR-RR--LSKPQR-L---ALLAYGVS 80 (292)
T ss_pred HHHHHHHHHHHhhHHHHHHH----ccccC--hhhHHHHHHHHHHHHHHHH-hhHHH-hc--cChhhh-H---HHHHHHHH
Confidence 45556666666666555444 44444 3445555554333333322 33333 32 111212 2 22334666
Q ss_pred HHHhHHHHHhhhcccchhhHHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcccch
Q 043307 122 LTGDNMMYSYGLLYLPLSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADSENTSGVSKGNYVI 201 (248)
Q Consensus 122 ~a~~n~lYa~gl~yLp~ST~sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll~l~~~s~~~~~~~~~~y~l 201 (248)
.+..|++|=.++..+|-++.-=|--+-..- ++ .+-.+|..-+.|.++.++-+...+- .+.+. +.-...
T Consensus 81 Lg~MNl~FY~si~riPlGiAVAiEF~GPL~---vA-~~~sRr~~d~vwvaLAvlGi~lL~p-~~~~~-------~~lDp~ 148 (292)
T COG5006 81 LGGMNLLFYLSIERIPLGIAVAIEFTGPLA---VA-LLSSRRLRDFVWVALAVLGIWLLLP-LGQSV-------WSLDPV 148 (292)
T ss_pred HHHHHHHHHHHHHhccchhhhhhhhccHHH---HH-HHhccchhhHHHHHHHHHHHHhhee-ccCCc-------CcCCHH
Confidence 777788887999999999876444443333 33 2346777778887777654443321 11111 112368
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043307 202 GFLCTLGASATYSLYLSLLQLSFEKVIK 229 (248)
Q Consensus 202 Gf~~tL~Asalygl~l~L~ql~f~Kv~k 229 (248)
|..++++|.++..+|+.+. +|+-+
T Consensus 149 Gv~~Al~AG~~Wa~YIv~G----~r~g~ 172 (292)
T COG5006 149 GVALALGAGACWALYIVLG----QRAGR 172 (292)
T ss_pred HHHHHHHHhHHHHHHHHHc----chhcc
Confidence 9999999999999999999 66653
No 62
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.46 E-value=0.062 Score=51.09 Aligned_cols=72 Identities=18% Similarity=0.219 Sum_probs=64.3
Q ss_pred HHHHHhHHHHHhhhcccchhhHHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCCCCC
Q 043307 120 LLLTGDNMMYSYGLLYLPLSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADSENT 191 (248)
Q Consensus 120 vl~a~~n~lYa~gl~yLp~ST~sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll~l~~~s~~~ 191 (248)
+.+++.+..=..++.+=|++.-+=+.+.+.+++|+++.++++||++..-..+-++..+|.+++..|...+++
T Consensus 72 ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~ 143 (335)
T KOG2922|consen 72 LTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQE 143 (335)
T ss_pred HHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccc
Confidence 566777777778899999999999999999999999999999999999999999999999999998866543
No 63
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=90.99 E-value=3.5 Score=37.60 Aligned_cols=59 Identities=12% Similarity=0.248 Sum_probs=50.6
Q ss_pred hHHHHHhhhcccchhhHHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhc
Q 043307 125 DNMMYSYGLLYLPLSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAV 184 (248)
Q Consensus 125 ~n~lYa~gl~yLp~ST~sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll~l 184 (248)
++..+ +-...-.+-+.+++..+--+++.++|.++.++++|+.+|.++++...|..+-..
T Consensus 239 ~~~i~-~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~ 297 (303)
T PF08449_consen 239 QFFIF-YLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSY 297 (303)
T ss_pred HHHHH-HHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHH
Confidence 44444 346778888999999999999999999999999999999999999999887543
No 64
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=90.52 E-value=1.9 Score=40.57 Aligned_cols=128 Identities=17% Similarity=0.246 Sum_probs=97.0
Q ss_pred hHHHHHHHHHhcCCCc-hhHHHH----------HhhhCchhhhhhhhhcc------cCCCC-C-----------------
Q 043307 57 AATLLGRLYYDKGGNS-KWMATF----------VQSAGFPILLPVLCCFS------NGSRS-T----------------- 101 (248)
Q Consensus 57 ~~~LL~r~Yy~~gG~s-~W~~t~----------vqtagfPlll~~~~~~~------~~~~~-~----------------- 101 (248)
...+++|+++...=++ +|++=. ++..++|..-+-+++++ +|+-+ +
T Consensus 111 ~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~lpwval~la~sf~~Ygl~RK~~~v~a~~g~~lE~l~l~p~al 190 (293)
T COG2962 111 VNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSLPWVALALALSFGLYGLLRKKLKVDALTGLTLETLLLLPVAL 190 (293)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCchHHhHHHHHHHHhHHHH
Confidence 3578899999877776 676543 45667787655555443 12111 0
Q ss_pred -----CCCCC-----chHHHHHHHHHHHHHHHHhHHHHHhhhcccchhhHHHHHhhhhHHHHHHHHHHhccccchHHHHH
Q 043307 102 -----NKTDP-----KISTLVCLYVAFGLLLTGDNMMYSYGLLYLPLSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNS 171 (248)
Q Consensus 102 -----~~~~p-----~~~~l~~~~~~lGvl~a~~n~lYa~gl~yLp~ST~sLi~sTqL~FTAiFs~li~~~kfT~~~ins 171 (248)
-..++ ...+...+.+..|+..+.-=.+|..|.+.+|.||..++.+-...---+.+.++.+|+|+.-+..+
T Consensus 191 ~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~ 270 (293)
T COG2962 191 IYLLFLADSGQFLQQNANSLWLLLVLAGLVTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVT 270 (293)
T ss_pred HHHHHHhcCchhhhcCCchHHHHHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 01112 13466677888899999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHhc
Q 043307 172 LVLLTISATLLAV 184 (248)
Q Consensus 172 vvLlt~g~~Ll~l 184 (248)
-+++-.|.++.+.
T Consensus 271 F~~IW~aL~l~~~ 283 (293)
T COG2962 271 FAFIWLALALFSI 283 (293)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888877654
No 65
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=87.47 E-value=6.4 Score=32.61 Aligned_cols=104 Identities=20% Similarity=0.187 Sum_probs=70.3
Q ss_pred chhHHHH-HhhhCchhhhhhhhhcccCCCCCCCCCCchHHHHHHHHHHHHHHHHhHHHHHhhhcccchhhH-HHHHhhhh
Q 043307 72 SKWMATF-VQSAGFPILLPVLCCFSNGSRSTNKTDPKISTLVCLYVAFGLLLTGDNMMYSYGLLYLPLSTY-SLLCATQL 149 (248)
Q Consensus 72 s~W~~t~-vqtagfPlll~~~~~~~~~~~~~~~~~p~~~~l~~~~~~lGvl~a~~n~lYa~gl~yLp~ST~-sLi~sTqL 149 (248)
|+|.+++ ....|+-++++.+++.+.+ + .+.-+..|+.....-.+|+++- +...+....+.+++. .++...|+
T Consensus 29 s~~~as~i~~~~G~i~~~i~~~~~~~~--~-~~~~~~~p~w~~lGG~lG~~~V---~~~~~~vp~lG~~~~~~l~~~GQl 102 (138)
T PF04657_consen 29 SPLVASFISFGVGFILLLIILLITGRP--S-LASLSSVPWWAYLGGLLGVFFV---LSNIILVPRLGAALTTILIVAGQL 102 (138)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhccc--c-cchhccCChHHhccHHHHHHHH---HHHHHHhhhhhHHHHHHHHHHHHH
Confidence 4555554 5688998888877776433 1 1111223444445545555444 444456677877765 45678899
Q ss_pred HHHHHHHHH----HhccccchHHHHHHHHHHHHHHH
Q 043307 150 AFNAFFSFF----LNSQKFTPFIFNSLVLLTISATL 181 (248)
Q Consensus 150 ~FTAiFs~l----i~~~kfT~~~insvvLlt~g~~L 181 (248)
....++=.+ ..|+|+++..+.++.++.+|..+
T Consensus 103 ~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 103 IASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 999988776 78999999999999999998764
No 66
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=87.43 E-value=1 Score=36.76 Aligned_cols=62 Identities=16% Similarity=0.208 Sum_probs=54.3
Q ss_pred HHHHHhHHHHHhhhcccchhhHHHH-HhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Q 043307 120 LLLTGDNMMYSYGLLYLPLSTYSLL-CATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATL 181 (248)
Q Consensus 120 vl~a~~n~lYa~gl~yLp~ST~sLi-~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~L 181 (248)
++....+.+|.+.+..-|.|...=+ ++...+||++.++++-+|..++..+..+.|...|.++
T Consensus 49 ~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 49 LLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 5566778889899999999987777 5999999999999999999899999999999888765
No 67
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=86.85 E-value=6.8 Score=36.44 Aligned_cols=104 Identities=22% Similarity=0.217 Sum_probs=71.2
Q ss_pred CCchhHHHHHhhhCchhhhhhhhhcccCCCCCCCCCCchHHHHHHHHHHHHHHHHhHHHHHhhhcccchhhHHHHHhhhh
Q 043307 70 GNSKWMATFVQSAGFPILLPVLCCFSNGSRSTNKTDPKISTLVCLYVAFGLLLTGDNMMYSYGLLYLPLSTYSLLCATQL 149 (248)
Q Consensus 70 G~s~W~~t~vqtagfPlll~~~~~~~~~~~~~~~~~p~~~~l~~~~~~lGvl~a~~n~lYa~gl~yLp~ST~sLi~sTqL 149 (248)
+-+.|-.-+-|.-|-=+--..+.+.. + + +...|-..--+.-|++|+..|+.|-.+...+-+++.=-+.|+..
T Consensus 161 ~~~~~~~~lPqaiGm~i~a~i~~~~~-~-~------~~~~k~~~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~v 232 (269)
T PF06800_consen 161 HVSGWSAFLPQAIGMLIGAFIFNLFS-K-K------PFFEKKSWKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGV 232 (269)
T ss_pred CCChhHhHHHHHHHHHHHHHHHhhcc-c-c------cccccchHHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHH
Confidence 34556666777777644333332221 1 1 11223334556779999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccccchHH----HHHHHHHHHHHHH
Q 043307 150 AFNAFFSFFLNSQKFTPFI----FNSLVLLTISATL 181 (248)
Q Consensus 150 ~FTAiFs~li~~~kfT~~~----insvvLlt~g~~L 181 (248)
+-..+-+-++.|||=|+.. +.+++|..+|+++
T Consensus 233 vIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 233 VISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred HHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 9999999999998877653 4445555555443
No 68
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=85.77 E-value=2.7 Score=36.98 Aligned_cols=44 Identities=23% Similarity=0.216 Sum_probs=39.1
Q ss_pred HHHHHHHHHhHHHHHhhhcccchhhHHHHHhhhhHHHHHHHHHH
Q 043307 116 VAFGLLLTGDNMMYSYGLLYLPLSTYSLLCATQLAFNAFFSFFL 159 (248)
Q Consensus 116 ~~lGvl~a~~n~lYa~gl~yLp~ST~sLi~sTqL~FTAiFs~li 159 (248)
+.+|+..+....+|.+|++++|+++.+++.+.+++++++++.++
T Consensus 212 ~~~g~~t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 212 VLAGLITGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 35556677888999999999999999999999999999999875
No 69
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=85.38 E-value=9.2 Score=36.54 Aligned_cols=106 Identities=15% Similarity=0.202 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHhHHHHHhhhcccchhhHHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCCCCCC
Q 043307 113 CLYVAFGLLLTGDNMMYSYGLLYLPLSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADSENTS 192 (248)
Q Consensus 113 ~~~~~lGvl~a~~n~lYa~gl~yLp~ST~sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll~l~~~s~~~~ 192 (248)
.-|..+++.-.....+---+++|++.=|..|-=+.|++=+.+-..++-|+|.+...-....|.+.|+.+..+.+++|.+.
T Consensus 84 ~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~ 163 (327)
T KOG1581|consen 84 YKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSS 163 (327)
T ss_pred hHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCcc
Confidence 35666666666666777689999999999999999999999999999999999999999999999999988877666433
Q ss_pred CCCCcccchhHHHHHHHHHHHHHHHH
Q 043307 193 GVSKGNYVIGFLCTLGASATYSLYLS 218 (248)
Q Consensus 193 ~~~~~~y~lGf~~tL~Asalygl~l~ 218 (248)
+.-+.+-.+|+.+-.+-=+.=|+...
T Consensus 164 ~~g~~ns~~G~~Ll~~~L~fDgfTn~ 189 (327)
T KOG1581|consen 164 KSGRENSPIGILLLFGYLLFDGFTNA 189 (327)
T ss_pred ccCCCCchHhHHHHHHHHHHHhhHHh
Confidence 33334567898876655555555333
No 70
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=82.62 E-value=0.056 Score=50.53 Aligned_cols=146 Identities=14% Similarity=0.228 Sum_probs=100.1
Q ss_pred CCchhHHHHHhhhCchhhhhhhhhcccCCCCCCCCCCchHHHHHHHHHHHHHHHHhHHHHHhhhcccchhhHHHHHhhhh
Q 043307 70 GNSKWMATFVQSAGFPILLPVLCCFSNGSRSTNKTDPKISTLVCLYVAFGLLLTGDNMMYSYGLLYLPLSTYSLLCATQL 149 (248)
Q Consensus 70 G~s~W~~t~vqtagfPlll~~~~~~~~~~~~~~~~~p~~~~l~~~~~~lGvl~a~~n~lYa~gl~yLp~ST~sLi~sTqL 149 (248)
=|-+=.+|++.=+---+..-|+..+++ +..+-...-|+.+|+.=.-.|++-.-+++|..-..-+|+-.--.
T Consensus 45 iN~Pt~QtFl~Y~LLalVY~~~~~fR~---------~~~~~~~~hYilla~~DVEaNy~vV~AyQyTsmtSi~lLDcwai 115 (336)
T KOG2766|consen 45 INAPTSQTFLNYVLLALVYGPIMLFRR---------KYIKAKWRHYILLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAI 115 (336)
T ss_pred CCCccHHHHHHHHHHHHHHhhHHHhhh---------HHHHHHHHHhhheeEEeecccEEEeeehhhcchHHHHHHHHhhh
Confidence 455667777766554444444444321 22222222388888877788988888999999988888888888
Q ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccC--CCCCCCCCCCcccchhHHHHHHHH-----------------
Q 043307 150 AFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNA--DSENTSGVSKGNYVIGFLCTLGAS----------------- 210 (248)
Q Consensus 150 ~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll~l~~--~s~~~~~~~~~~y~lGf~~tL~As----------------- 210 (248)
.-..++++++++-|--..++.+|+.+.+|.+++...| .+|+.. +.+...|..+.+++|
T Consensus 116 p~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~ag---gsnp~~GD~lvi~GATlYaVSNv~EEflvkn~ 192 (336)
T KOG2766|consen 116 PCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAG---GSNPVKGDFLVIAGATLYAVSNVSEEFLVKNA 192 (336)
T ss_pred HHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccC---CCCCccCcEEEEecceeeeeccccHHHHHhcC
Confidence 8899999999999999999999999999999876544 233321 223445555444444
Q ss_pred ---------HHHHHHHHHHHHHHHHh
Q 043307 211 ---------ATYSLYLSLLQLSFEKV 227 (248)
Q Consensus 211 ---------alygl~l~L~ql~f~Kv 227 (248)
-+||-+.+.+|..|++.
T Consensus 193 d~~elm~~lgLfGaIIsaIQ~i~~~~ 218 (336)
T KOG2766|consen 193 DRVELMGFLGLFGAIISAIQFIFERH 218 (336)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 35666777777777753
No 71
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.23 E-value=1.8 Score=41.00 Aligned_cols=97 Identities=24% Similarity=0.329 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhcccchhhHHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCC
Q 043307 109 STLVCLYVAFGLLLTGDNMMYSYGLLYLPLSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADS 188 (248)
Q Consensus 109 ~~l~~~~~~lGvl~a~~n~lYa~gl~yLp~ST~sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll~l~~~s 188 (248)
++++-+.++.=.++..+|++ ++|.|++-|.+=-+.-+.||.+++|.+.|||=+..-..+-.+..+|-.+ |+ |.
T Consensus 103 r~vlplsvVfi~mI~fnnlc----L~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~l-Gv--dq 175 (347)
T KOG1442|consen 103 RQVLPLSVVFILMISFNNLC----LKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGL-GV--DQ 175 (347)
T ss_pred Hhhcchhheeeeehhcccee----hhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehhee-cc--cc
Confidence 45555666666777888865 5889999888888888999999999999999887766554444443322 33 33
Q ss_pred CCCCCCCCcccchhHHHHHHHHHHHHH
Q 043307 189 ENTSGVSKGNYVIGFLCTLGASATYSL 215 (248)
Q Consensus 189 ~~~~~~~~~~y~lGf~~tL~Asalygl 215 (248)
|... +.--++|.+.-..||..-++
T Consensus 176 E~~~---~~ls~~GvifGVlaSl~vAl 199 (347)
T KOG1442|consen 176 EGST---GTLSWIGVIFGVLASLAVAL 199 (347)
T ss_pred cccc---CccchhhhHHHHHHHHHHHH
Confidence 2221 22335777776666665554
No 72
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=68.14 E-value=79 Score=28.48 Aligned_cols=113 Identities=13% Similarity=0.127 Sum_probs=68.1
Q ss_pred chHHHHHHHHHhcCCCchhHHHH-HhhhCchhhhhhhhhcccCCCCCCC-CCCchHHHHHHHHHHHHHHHHhHHHHHhhh
Q 043307 56 SAATLLGRLYYDKGGNSKWMATF-VQSAGFPILLPVLCCFSNGSRSTNK-TDPKISTLVCLYVAFGLLLTGDNMMYSYGL 133 (248)
Q Consensus 56 ~~~~LL~r~Yy~~gG~s~W~~t~-vqtagfPlll~~~~~~~~~~~~~~~-~~p~~~~l~~~~~~lGvl~a~~n~lYa~gl 133 (248)
.++..-.++.= +++.+.|++.. +-..|.++.++..++....+.++.. ..... .. .++.+ ++.+...++.+.-+
T Consensus 128 ~agVy~E~~lK-~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~-~~--~~~~i-~~~a~gGllva~v~ 202 (244)
T PF04142_consen 128 FAGVYFEKLLK-RSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYS-WW--VWIVI-FLQAIGGLLVAFVL 202 (244)
T ss_pred HHHHHHHHHhc-ccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcc-hH--HHHHH-HHHHHhhHHHHHHH
Confidence 34444444433 34477787764 2445556655554443221111111 01111 11 11221 35556667778889
Q ss_pred cccchhhHHHHHhhhhHHHHHHHHHHhccccchHHHHHHH
Q 043307 134 LYLPLSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLV 173 (248)
Q Consensus 134 ~yLp~ST~sLi~sTqL~FTAiFs~li~~~kfT~~~insvv 173 (248)
+|.|.-+=+.-.+..++.|+++++++.+.++|...+.+.+
T Consensus 203 KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~ 242 (244)
T PF04142_consen 203 KYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAA 242 (244)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhhee
Confidence 9999999999999999999999999999999987766543
No 73
>PF05884 ZYG-11_interact: Interactor of ZYG-11; InterPro: IPR008574 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=60.53 E-value=1.6e+02 Score=28.10 Aligned_cols=127 Identities=13% Similarity=0.163 Sum_probs=69.1
Q ss_pred hhcccchhHHHHHHHHHHHHhccchHHHHHHHHHhcCCCchhHHHHHhhhCchh---hhhhhhhcccCCCCCCCCCCchH
Q 043307 33 LKLKHYKWWLRVILYVVCLLVGQSAATLLGRLYYDKGGNSKWMATFVQSAGFPI---LLPVLCCFSNGSRSTNKTDPKIS 109 (248)
Q Consensus 33 ~~~~~~~~w~lv~~~~~~l~~G~~~~~LL~r~Yy~~gG~s~W~~t~vqtagfPl---ll~~~~~~~~~~~~~~~~~p~~~ 109 (248)
|...+-+.-...+.++.++++|.+.+.+++.++. ++|+.-++-..|--+ +.+|....|-.+.+..+.....-
T Consensus 94 P~~~~~~~i~~tF~~ssIlLl~~Siss~iG~YiL-----apl~~~i~~~~gAaila~iviP~~~~y~ln~~~~s~~~~R~ 168 (299)
T PF05884_consen 94 PEKLSTSSIVETFSWSSILLLGFSISSFIGGYIL-----APLFGIIFGPFGAAILAYIVIPLIAYYYLNKEDGSLAESRL 168 (299)
T ss_pred CcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhcchhHHHHHHHHHHHHHHhhcccccCchHHHHH
Confidence 4555555566677888888888899999998876 456666665555544 34555444322121111111111
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhhhcccchhhHHHHHhhhhHHHHHHHHHHhccccchHHHHHH
Q 043307 110 TLVCLYVAFGLLLTGDNMMYSYGLLYLPLSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSL 172 (248)
Q Consensus 110 ~l~~~~~~lGvl~a~~n~lYa~gl~yLp~ST~sLi~sTqL~FTAiFs~li~~~kfT~~~insv 172 (248)
-++..++.=|++++. +++|+-.+.-=+..=|+++-+-+..+.. .+.-+|..+.+.
T Consensus 169 ~ll~~a~~QGvL~Ga-------~ls~~~l~sePf~~LT~iv~sfi~~~i~-~~~~~R~~lLg~ 223 (299)
T PF05884_consen 169 ALLFFALFQGVLVGA-------GLSHLYLSSEPFIALTPIVSSFIYPLIA-GHGTNRQKLLGI 223 (299)
T ss_pred HHHHHHHHHHHHHHH-------HhhcccccCCcHHHHHHHHHHHHHHHHc-cCCcchHHHHHH
Confidence 244455555666553 4444433334444555555555555554 335566665544
No 74
>COG1950 Predicted membrane protein [Function unknown]
Probab=59.79 E-value=36 Score=28.26 Aligned_cols=80 Identities=23% Similarity=0.323 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhhhcccchhhHHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCC
Q 043307 108 ISTLVCLYVAFGLLLTGDNMMYSYGLLYLPLSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNAD 187 (248)
Q Consensus 108 ~~~l~~~~~~lGvl~a~~n~lYa~gl~yLp~ST~sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll~l~~~ 187 (248)
+++-+.+++++|++-+.--=.- -..-+|.... |- -.|. +.+|++.+...+... +.
T Consensus 30 ~~~aliaa~IlglvNalIRPIL--~ilslPltil-----Tl----GLF~----------fVINai~l~laa~~~---~~- 84 (120)
T COG1950 30 FGAALIAAVILGLVNALIRPIL--LILSLPLTIL-----TL----GLFT----------FVINAIMLWLAAALV---GG- 84 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHhhHHHHH-----HH----HHHH----------HHHHHHHHHHHHHHh---CC-
Confidence 6677888888888766543222 3344553221 11 2222 346888888877666 11
Q ss_pred CCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHH
Q 043307 188 SENTSGVSKGNYVIGFLCTLGASATYSLYLSLLQ 221 (248)
Q Consensus 188 s~~~~~~~~~~y~lGf~~tL~Asalygl~l~L~q 221 (248)
+-.+-||+.++-+|+..++...+.+
T Consensus 85 ---------~fqi~gFgaAi~gaivLsiis~li~ 109 (120)
T COG1950 85 ---------GFQIDGFGAAILGAIVLSIISWLIN 109 (120)
T ss_pred ---------chhhhhHHHHHHHHHHHHHHHHHHH
Confidence 2367899999999999999999886
No 75
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=59.45 E-value=15 Score=36.21 Aligned_cols=73 Identities=4% Similarity=0.108 Sum_probs=60.8
Q ss_pred HHHHHHHHHhHHHHHhhhcccchhhHHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCC
Q 043307 116 VAFGLLLTGDNMMYSYGLLYLPLSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADS 188 (248)
Q Consensus 116 ~~lGvl~a~~n~lYa~gl~yLp~ST~sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll~l~~~s 188 (248)
..-.+...+.+|+.+.|..-.+.-+-++=.+.|.-...++=.++-++++|++.+.+.+...+|-+.....+..
T Consensus 322 ~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~ 394 (416)
T KOG2765|consen 322 FNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSEN 394 (416)
T ss_pred HhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccccc
Confidence 3335666788999999999888888888888888888888899999999999999999999998887665543
No 76
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=59.09 E-value=32 Score=31.72 Aligned_cols=113 Identities=13% Similarity=0.176 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHhHHHHHhhhcccchhhHHHHHhh-hhHHHHH---HHHH-Hhcccc--chHHHHHHHHHHHHHHHHhc-c
Q 043307 114 LYVAFGLLLTGDNMMYSYGLLYLPLSTYSLLCAT-QLAFNAF---FSFF-LNSQKF--TPFIFNSLVLLTISATLLAV-N 185 (248)
Q Consensus 114 ~~~~lGvl~a~~n~lYa~gl~yLp~ST~sLi~sT-qL~FTAi---Fs~l-i~~~kf--T~~~insvvLlt~g~~Ll~l-~ 185 (248)
.+...|.+|+..|.+---..+.+-.+..-+|-++ +++.-=. |..| +.+|.. ......++++..+|.++... .
T Consensus 57 ~amlgG~lW~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik 136 (254)
T PF07857_consen 57 WAMLGGALWATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIK 136 (254)
T ss_pred HHHhhhhhhhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeec
Confidence 6677788898888887667777666666666555 2222222 2222 223333 34566677788888877664 1
Q ss_pred CCC-------C--------------C---CCCC-------CCcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043307 186 ADS-------E--------------N---TSGV-------SKGNYVIGFLCTLGASATYSLYLSLLQLSFEK 226 (248)
Q Consensus 186 ~~s-------~--------------~---~~~~-------~~~~y~lGf~~tL~Asalygl~l~L~ql~f~K 226 (248)
++. + + .++. +.+++++|..+++.+.++||.-..=+++.-++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S~vd~l~~~~~RivG~~LAv~aGvlyGs~fvPv~Yi~~~ 208 (254)
T PF07857_consen 137 SEEKEPKKSSEETPLSIEDVIEIEDDSENSEDSSWVDELSPRKKRIVGIILAVFAGVLYGSNFVPVIYIQDH 208 (254)
T ss_pred CCCCCccccccccccccccccccccccccccccccccccccccchhHhHHHHHHHHHHHhcccchHHHHHhC
Confidence 000 0 0 0001 12268899999999999999988777666554
No 77
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=59.05 E-value=1.8e+02 Score=28.26 Aligned_cols=150 Identities=15% Similarity=0.186 Sum_probs=87.3
Q ss_pred cccchhHHHHHHHHHHHHhccchH----HHHHHHHHhcCCCchhHHHH-----HhhhCchhhhhhhhhcccCC-CC----
Q 043307 35 LKHYKWWLRVILYVVCLLVGQSAA----TLLGRLYYDKGGNSKWMATF-----VQSAGFPILLPVLCCFSNGS-RS---- 100 (248)
Q Consensus 35 ~~~~~~w~lv~~~~~~l~~G~~~~----~LL~r~Yy~~gG~s~W~~t~-----vqtagfPlll~~~~~~~~~~-~~---- 100 (248)
.++.++=+++++-+-++-.+...+ .-+-..= .+.|.+.+.+++ |-..||-..++ +|+.+..+ ++
T Consensus 168 efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a-~a~G~~~l~~~l~~~vvv~~GGf~tN~~-yc~~~l~~~k~~s~~ 245 (344)
T PF06379_consen 168 EFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAA-VAAGVNPLYANLPVYVVVLWGGFITNLI-YCLILLAKNKNWSWK 245 (344)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHH-HHcCCCcHHHhCchhhhhhhhHHHHHHH-HHHHHHhhcCCCccc
Confidence 345556667766555554433222 1121111 234666666654 34456655543 55543222 21
Q ss_pred -CC-CCCCchHHHHHHHHHHHHHHHHhHHHHHhhhcccc----hhhHHHHHhhhhHHHHHHHHHHh-----ccccchHHH
Q 043307 101 -TN-KTDPKISTLVCLYVAFGLLLTGDNMMYSYGLLYLP----LSTYSLLCATQLAFNAFFSFFLN-----SQKFTPFIF 169 (248)
Q Consensus 101 -~~-~~~p~~~~l~~~~~~lGvl~a~~n~lYa~gl~yLp----~ST~sLi~sTqL~FTAiFs~li~-----~~kfT~~~i 169 (248)
+. ..+|...+=...++.-|+++-.|-+.|..|-..++ ++...+..++-++|.-+-.+++- ++|--+..+
T Consensus 246 ~d~~~~~~~~~~N~~~~aLaG~lWy~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl~snvwGl~lkEWKg~s~kt~~vl~ 325 (344)
T PF06379_consen 246 GDYSVAKPPLLKNYLFCALAGVLWYSQFFFYGMGESKLGASGPFSSWAIHMALIVLFSNVWGLILKEWKGASKKTIRVLV 325 (344)
T ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHhccCCcccHHHHH
Confidence 11 12343345566777889999999999999999888 45666666666666666665553 234445566
Q ss_pred HHHHHHHHHHHHHhccC
Q 043307 170 NSLVLLTISATLLAVNA 186 (248)
Q Consensus 170 nsvvLlt~g~~Ll~l~~ 186 (248)
..+.++.+++++++.+.
T Consensus 326 ~G~~vlI~s~~ivG~G~ 342 (344)
T PF06379_consen 326 LGIAVLILSVVIVGYGM 342 (344)
T ss_pred HHHHHHHHHHHHHhccc
Confidence 77777777777777654
No 78
>PRK01844 hypothetical protein; Provisional
Probab=56.62 E-value=13 Score=28.27 Aligned_cols=28 Identities=29% Similarity=0.604 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHhc
Q 043307 41 WLRVILYVVCLLVGQSAATLLGRLYYDK 68 (248)
Q Consensus 41 w~lv~~~~~~l~~G~~~~~LL~r~Yy~~ 68 (248)
|+.+.+-++.+++|-.+|..+.|-|+.+
T Consensus 4 ~~~I~l~I~~li~G~~~Gff~ark~~~k 31 (72)
T PRK01844 4 WLGILVGVVALVAGVALGFFIARKYMMN 31 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666789999999999999999876
No 79
>COG4711 Predicted membrane protein [Function unknown]
Probab=51.54 E-value=47 Score=30.12 Aligned_cols=126 Identities=15% Similarity=0.080 Sum_probs=80.9
Q ss_pred HHHHHHHHhHHHHHhhhcccchhhHHHHHhhhhHHHHHHH--HHHhccccchHHHHHHHHHHHHHHHHhccCCCCC--CC
Q 043307 117 AFGLLLTGDNMMYSYGLLYLPLSTYSLLCATQLAFNAFFS--FFLNSQKFTPFIFNSLVLLTISATLLAVNADSEN--TS 192 (248)
Q Consensus 117 ~lGvl~a~~n~lYa~gl~yLp~ST~sLi~sTqL~FTAiFs--~li~~~kfT~~~insvvLlt~g~~Ll~l~~~s~~--~~ 192 (248)
.+|.+.+-+.+.= .|+.=-+-.++-+.-++|+-.+. ..+..+|.||+-..++++.+++..-..+-..+.+ ++
T Consensus 76 ~~g~~l~r~~lg~----~~~~Dl~q~vIGAi~lA~pfapTeEvwllA~~isp~h~lal~~~~l~I~y~fvy~a~f~~~~~ 151 (217)
T COG4711 76 LLGELLERNQLGD----GTLADLVQEVIGAIVLAFPFAPTEEVWLLAYRISPYHSLALVLVVLVIMYSFVYTAKFGNDKK 151 (217)
T ss_pred HHHHHhccccccc----ccHHHHHHHHHHHHhhccccCchhHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Confidence 4465555544331 33344455666666666666553 5777899999999999999888775443322222 11
Q ss_pred CCCCccc-chhHHHHHHHHHHHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhc
Q 043307 193 GVSKGNY-VIGFLCTLGASATYSLYLSLLQLSFEKVIKKETFSVVMDMQIYSSFVA 247 (248)
Q Consensus 193 ~~~~~~y-~lGf~~tL~Asalygl~l~L~ql~f~Kv~k~~t~~~vlemQi~~slvA 247 (248)
-++...+ -.=+.-++..+++..+...++=..|+|..+.. ++..++--++.++.|
T Consensus 152 ~~~~~g~vp~rl~~tmv~y~~~~l~~~y~l~~f~~~~~~~-~t~~i~At~vl~~fa 206 (217)
T COG4711 152 REEGAGFVPRRLRTTMVIYFVSSLASIYMLGIFTRFDFTT-VTQAIKATLVLGLFA 206 (217)
T ss_pred cccccceeeeehHHHHHHHHHHHHHHHHHHHhhhhhhhhH-HHHHHHHHHHHccHH
Confidence 1122222 23455788899999999999999999887666 677777666666654
No 80
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=51.29 E-value=2.4e+02 Score=27.31 Aligned_cols=64 Identities=22% Similarity=0.223 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhhhcccchhhHHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh
Q 043307 108 ISTLVCLYVAFGLLLTGDNMMYSYGLLYLPLSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLA 183 (248)
Q Consensus 108 ~~~l~~~~~~lGvl~a~~n~lYa~gl~yLp~ST~sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll~ 183 (248)
++..+.-++.-++++-.-.+.|.+-..+. ++|+.+ +-.|.++..+++ |...+-.++.+|+.+-.
T Consensus 208 ~r~al~Gai~a~vl~~~~~~~f~~yv~~~--~~y~~i---YGs~a~v~i~Ll-------Wlyls~~I~L~Gael~~ 271 (412)
T PRK04214 208 LRHALPGALLTAVLLELVKWGFGFYLGNF--QTYQRI---YGAFAAVPILLL-------WIYLLWVLVLLGASLTS 271 (412)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHhc--ccccHH---HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 45666677778888888888887766554 456644 445777777766 44455555556666544
No 81
>PRK00523 hypothetical protein; Provisional
Probab=50.26 E-value=19 Score=27.41 Aligned_cols=28 Identities=21% Similarity=0.260 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHhc
Q 043307 41 WLRVILYVVCLLVGQSAATLLGRLYYDK 68 (248)
Q Consensus 41 w~lv~~~~~~l~~G~~~~~LL~r~Yy~~ 68 (248)
|+.+.+-++++++|-.++..+.|-|+.+
T Consensus 5 ~l~I~l~i~~li~G~~~Gffiark~~~k 32 (72)
T PRK00523 5 GLALGLGIPLLIVGGIIGYFVSKKMFKK 32 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566778999999999999999976
No 82
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=49.06 E-value=27 Score=32.17 Aligned_cols=83 Identities=22% Similarity=0.307 Sum_probs=50.7
Q ss_pred HHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHH
Q 043307 142 SLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADSENTSGVSKGNYVIGFLCTLGASATYSLYLSLLQ 221 (248)
Q Consensus 142 sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll~l~~~s~~~~~~~~~~y~lGf~~tL~Asalygl~l~L~q 221 (248)
+.=+.-|..+..+|.+.-.|+| +-..+.++.+..+++..+......+++ .++...+|++|+...-..||-=+.-+
T Consensus 73 ~~G~~ie~~Yi~~f~~ya~~k~-~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~lG~vc~~~nI~~~~sPL~~m- 147 (243)
T KOG1623|consen 73 GIGLVIETVYISIFLYYAPKKK-TVKIVLALVLGVIGLIILLTLLLFHDP---ERRVSVLGIVCAVFNISMFAAPLSVI- 147 (243)
T ss_pred hhcHHHHHHHHHHHheecCchh-eeEeeehHHHHHHHHHHHHHHHhcCCc---ceeeeeeehhhhhhhHHhhhccHHhh-
Confidence 3334557788888888888888 444443444444444433221111111 13356799999999888888755555
Q ss_pred HHHHHhhcccc
Q 043307 222 LSFEKVIKKET 232 (248)
Q Consensus 222 l~f~Kv~k~~t 232 (248)
+|++|+.+
T Consensus 148 ---~~VIktkS 155 (243)
T KOG1623|consen 148 ---RKVIKTKS 155 (243)
T ss_pred ---hhheecCc
Confidence 68988764
No 83
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=46.83 E-value=1.3e+02 Score=28.49 Aligned_cols=113 Identities=12% Similarity=0.160 Sum_probs=80.1
Q ss_pred HHHhhhcccchhhHHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcccchhHHHHH
Q 043307 128 MYSYGLLYLPLSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNADSENTSGVSKGNYVIGFLCTL 207 (248)
Q Consensus 128 lYa~gl~yLp~ST~sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll~l~~~s~~~~~~~~~~y~lGf~~tL 207 (248)
--+.+++|+|.-|.-+=-+-+.+=..|+..++.+++-.+..-..|.+..+|+++.--.+.. -.|.+++....|=++-+
T Consensus 101 ssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~K--v~g~e~~t~g~GElLL~ 178 (337)
T KOG1580|consen 101 SSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENK--VGGAEDKTFGFGELLLI 178 (337)
T ss_pred hccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccc--cCCCcccccchHHHHHH
Confidence 3457899999999999999999999999999999999999999999999999986544322 33455566677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccceeeehhhhhhh
Q 043307 208 GASATYSLYLSLLQLSFEKVIKKETFSVVMDMQIYS 243 (248)
Q Consensus 208 ~Asalygl~l~L~ql~f~Kv~k~~t~~~vlemQi~~ 243 (248)
..-++=|+-.+.- =-.++..++..-+|..-|-++.
T Consensus 179 lSL~mDGlTg~~Q-drira~yq~~g~~MM~~~NlwS 213 (337)
T KOG1580|consen 179 LSLAMDGLTGSIQ-DRIRASYQRTGTSMMFYTNLWS 213 (337)
T ss_pred HHHHhcccchhHH-HHHHHhhccCchhhHHHHHHHH
Confidence 7777777643332 2223333444444444444443
No 84
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=45.12 E-value=1.7 Score=40.60 Aligned_cols=109 Identities=17% Similarity=0.156 Sum_probs=73.1
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhhhcccchhhHH-HHHhhhhHHHHHHHHHHhccccchHHH----HHHHHHHHHHHHH
Q 043307 108 ISTLVCLYVAFGLLLTGDNMMYSYGLLYLPLSTYS-LLCATQLAFNAFFSFFLNSQKFTPFIF----NSLVLLTISATLL 182 (248)
Q Consensus 108 ~~~l~~~~~~lGvl~a~~n~lYa~gl~yLp~ST~s-Li~sTqL~FTAiFs~li~~~kfT~~~i----nsvvLlt~g~~Ll 182 (248)
+.+.+...+.-|++|+.......-+.++.-+|-.. +-..+||+-|.+|+.+..+|=-|+.++ .|++++.+|..+.
T Consensus 55 T~~~~iv~~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lT 134 (288)
T COG4975 55 TLTIFIVGFISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLT 134 (288)
T ss_pred chhhHHHHHHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEe
Confidence 56889999999999999888777777765444322 122789999999999999987777654 5778888888775
Q ss_pred hccCCCCCCCCCCCcccchhHHHHHHHHHHHHHHH
Q 043307 183 AVNADSENTSGVSKGNYVIGFLCTLGASATYSLYL 217 (248)
Q Consensus 183 ~l~~~s~~~~~~~~~~y~lGf~~tL~Asalygl~l 217 (248)
+..+..++. +++.+++.-|+..-+..++.|=.|-
T Consensus 135 s~~~~~nk~-~~~~~n~kkgi~~L~iSt~GYv~yv 168 (288)
T COG4975 135 SKQDRNNKE-EENPSNLKKGIVILLISTLGYVGYV 168 (288)
T ss_pred eeecccccc-ccChHhhhhheeeeeeeccceeeeE
Confidence 555443332 2223334555555544555554433
No 85
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=38.81 E-value=2.4e+02 Score=30.01 Aligned_cols=49 Identities=14% Similarity=0.069 Sum_probs=34.5
Q ss_pred ccchhhHHHHHhhhhHHHHHH-----HHHHhccccchHHHHHHHHHHHHHHHHh
Q 043307 135 YLPLSTYSLLCATQLAFNAFF-----SFFLNSQKFTPFIFNSLVLLTISATLLA 183 (248)
Q Consensus 135 yLp~ST~sLi~sTqL~FTAiF-----s~li~~~kfT~~~insvvLlt~g~~Ll~ 183 (248)
-+|+|..+++...=-++.+.. .+++.|-|+++......++.+.-..++.
T Consensus 424 g~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~ 477 (735)
T KOG3626|consen 424 GISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLF 477 (735)
T ss_pred CCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHH
Confidence 357888888876666665544 5678899999988887776665554443
No 86
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=37.99 E-value=3.6e+02 Score=27.33 Aligned_cols=181 Identities=14% Similarity=0.166 Sum_probs=87.9
Q ss_pred cccchhHHHHHHHHHHHHhccchHHHHHHHHHh---cCCCchhHHHHHhhhCchhhhhhhhhcccCCCCCCCCCCchHHH
Q 043307 35 LKHYKWWLRVILYVVCLLVGQSAATLLGRLYYD---KGGNSKWMATFVQSAGFPILLPVLCCFSNGSRSTNKTDPKISTL 111 (248)
Q Consensus 35 ~~~~~~w~lv~~~~~~l~~G~~~~~LL~r~Yy~---~gG~s~W~~t~vqtagfPlll~~~~~~~~~~~~~~~~~p~~~~l 111 (248)
+.+||--.+..+|.++.-+..+....-+-=|=. +|+.-..+-=-+....---+++-+.+..++.++.....|..
T Consensus 30 ~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli--- 106 (488)
T KOG2325|consen 30 KTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLI--- 106 (488)
T ss_pred CCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHH---
Confidence 344554445556666666665544433333433 45655443322222211123333334444444322244421
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhcccch-hhHHHHHhhhhH-------HHHHHHHHHh----ccccchHH-------HHHH
Q 043307 112 VCLYVAFGLLLTGDNMMYSYGLLYLPL-STYSLLCATQLA-------FNAFFSFFLN----SQKFTPFI-------FNSL 172 (248)
Q Consensus 112 ~~~~~~lGvl~a~~n~lYa~gl~yLp~-ST~sLi~sTqL~-------FTAiFs~li~----~~kfT~~~-------insv 172 (248)
+.-++....|.+| .++.|.|. +-+-++.+ -.. +++.=+|+-- ++|-.... ...+
T Consensus 107 -----~s~ii~~~g~llY-~~l~~~~~~~~y~mL~~-R~l~Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~i 179 (488)
T KOG2325|consen 107 -----VSFLIAIIGNLLY-LALAYVPNGVKYLMLVA-RILTGVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGII 179 (488)
T ss_pred -----HHHHHHHHHHHHH-HHHHhcccchHHHHHHH-HHHcCcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHH
Confidence 2235566778999 77788888 44443332 111 1222233322 23322222 2222
Q ss_pred HHHHHHHHHHhccCCCCC-CCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043307 173 VLLTISATLLAVNADSEN-TSGVSKGNYVIGFLCTLGASATYSLYLSLLQLSFEKVI 228 (248)
Q Consensus 173 vLlt~g~~Ll~l~~~s~~-~~~~~~~~y~lGf~~tL~Asalygl~l~L~ql~f~Kv~ 228 (248)
+--++++++.++++.+-+ -.+..=+.|-.+.|..+.+...+.+.+... ||.+.
T Consensus 180 lGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~---f~E~~ 233 (488)
T KOG2325|consen 180 LGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFF---FKEVY 233 (488)
T ss_pred HhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhh---eeecc
Confidence 334455555556654422 233445578889998888888888765443 55544
No 87
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=36.45 E-value=3.3e+02 Score=24.70 Aligned_cols=36 Identities=17% Similarity=0.143 Sum_probs=17.5
Q ss_pred HHHHHhccchHHHHHHHHHhcCCCchhHHHHHhhhCchh
Q 043307 48 VVCLLVGQSAATLLGRLYYDKGGNSKWMATFVQSAGFPI 86 (248)
Q Consensus 48 ~~~l~~G~~~~~LL~r~Yy~~gG~s~W~~t~vqtagfPl 86 (248)
.....+|...++.++-+-.++-| |-..++=.+..++
T Consensus 154 ~~~~~~g~~~g~~l~~~l~~~~g---~~~~~~~~~~~~~ 189 (399)
T PRK05122 154 GIATYGALAIGAPLGVLLYHWGG---LAGLGLLIMLLAL 189 (399)
T ss_pred hhhhhHHHHHHHHHHHHHHHccc---HHHHHHHHHHHHH
Confidence 33444455556666555555544 5444443444443
No 88
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=36.17 E-value=72 Score=30.06 Aligned_cols=55 Identities=16% Similarity=0.084 Sum_probs=44.9
Q ss_pred HHHHhhhcccchhhHHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHHH
Q 043307 127 MMYSYGLLYLPLSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATL 181 (248)
Q Consensus 127 ~lYa~gl~yLp~ST~sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~L 181 (248)
+....-..+-.+-|-|++..|-=.||.+.|.++..+.+++.||.+-++...+..+
T Consensus 256 ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~ 310 (337)
T KOG1580|consen 256 WFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTA 310 (337)
T ss_pred HHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhh
Confidence 3333555566666778888999999999999999999999999999988776655
No 89
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=34.40 E-value=24 Score=33.13 Aligned_cols=77 Identities=16% Similarity=0.203 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhhhcccchhhHHHHHhhhhHHHHHHHHHHhccccchH----HHHHHHHHHHHHHHHh
Q 043307 108 ISTLVCLYVAFGLLLTGDNMMYSYGLLYLPLSTYSLLCATQLAFNAFFSFFLNSQKFTPF----IFNSLVLLTISATLLA 183 (248)
Q Consensus 108 ~~~l~~~~~~lGvl~a~~n~lYa~gl~yLp~ST~sLi~sTqL~FTAiFs~li~~~kfT~~----~insvvLlt~g~~Ll~ 183 (248)
..|-...-..-|++|+..|+.+-++-+..-++|.=-++|+-.+-.-+=.-++.|||=|+. ++..++|..+|+++++
T Consensus 205 ~~K~t~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg 284 (288)
T COG4975 205 FNKYTWLNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLG 284 (288)
T ss_pred hHHHHHHHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhh
Confidence 446666777889999999999999988888887666666665666666666777777664 4556666677776665
Q ss_pred c
Q 043307 184 V 184 (248)
Q Consensus 184 l 184 (248)
+
T Consensus 285 ~ 285 (288)
T COG4975 285 I 285 (288)
T ss_pred e
Confidence 4
No 90
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=33.40 E-value=3.2e+02 Score=23.63 Aligned_cols=26 Identities=19% Similarity=0.209 Sum_probs=18.4
Q ss_pred HHHHHHHHhccchHHHHHHHHHhcCC
Q 043307 45 ILYVVCLLVGQSAATLLGRLYYDKGG 70 (248)
Q Consensus 45 ~~~~~~l~~G~~~~~LL~r~Yy~~gG 70 (248)
.+.....-+|...+++++.+-.++.|
T Consensus 124 ~~~~~~~~~g~~~g~~l~~~l~~~~~ 149 (352)
T PF07690_consen 124 GILSAGFSLGSILGPLLGGFLISYFG 149 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCHCH
T ss_pred ccccchhhhhhhcccchhhhhhhccc
Confidence 45555667777888888887776655
No 91
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=32.39 E-value=6.3e+02 Score=26.75 Aligned_cols=21 Identities=19% Similarity=0.184 Sum_probs=10.4
Q ss_pred HHHHHhccchHHHHHHHHHhc
Q 043307 48 VVCLLVGQSAATLLGRLYYDK 68 (248)
Q Consensus 48 ~~~l~~G~~~~~LL~r~Yy~~ 68 (248)
.....+|...+++++-+..+.
T Consensus 145 ~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 145 EAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 333444555555555554443
No 92
>PF11293 DUF3094: Protein of unknown function (DUF3094); InterPro: IPR021444 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=31.89 E-value=59 Score=23.54 Aligned_cols=32 Identities=25% Similarity=0.420 Sum_probs=18.1
Q ss_pred hhcccchhHHHHHHHHHHHHhccchHHHHHHH
Q 043307 33 LKLKHYKWWLRVILYVVCLLVGQSAATLLGRL 64 (248)
Q Consensus 33 ~~~~~~~~w~lv~~~~~~l~~G~~~~~LL~r~ 64 (248)
-++|+.|.|.++++-+..+..=.-.|-+|+|+
T Consensus 23 VER~PFrP~~Ll~~li~Vv~gl~llS~ll~~l 54 (55)
T PF11293_consen 23 VERKPFRPWRLLIVLIVVVIGLGLLSRLLSRL 54 (55)
T ss_pred cccCCcchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35688888887765444333323455555553
No 93
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=31.77 E-value=97 Score=29.00 Aligned_cols=58 Identities=17% Similarity=0.297 Sum_probs=50.4
Q ss_pred HHhhhcccchhhHHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccC
Q 043307 129 YSYGLLYLPLSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNA 186 (248)
Q Consensus 129 Ya~gl~yLp~ST~sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll~l~~ 186 (248)
-+=+++|||++.|++.--...+--|.--.+..+.|.|...+.|-+|+.++++.-..+|
T Consensus 85 ~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D 142 (309)
T COG5070 85 SSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGD 142 (309)
T ss_pred cccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccch
Confidence 3457889999999999888888889999999999999999999999999998844333
No 94
>PF03631 Virul_fac_BrkB: Virulence factor BrkB; InterPro: IPR017039 This entry represents the uncharacterised protein family UPF0761. It includes the E. coli gene product of yihY, and was previously thought to be a family of tRNA-processing ribonuclease BN proteins []. This has been shown to be incorrect [].; GO: 0004540 ribonuclease activity
Probab=31.43 E-value=3.6e+02 Score=23.67 Aligned_cols=47 Identities=15% Similarity=0.137 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHhhhcccchhhHHHHHhhhhHHHHHHHHHH
Q 043307 108 ISTLVCLYVAFGLLLTGDNMMYSYGLLYLPLSTYSLLCATQLAFNAFFSFFL 159 (248)
Q Consensus 108 ~~~l~~~~~~lGvl~a~~n~lYa~gl~yLp~ST~sLi~sTqL~FTAiFs~li 159 (248)
.+..+.-++.-++++..-++.+.+=+.+.. +++.++. .+.+++..++
T Consensus 191 ~~~~~~Ga~~~~~~~~~~~~~f~~y~~~~~--~~~~~YG---~l~~li~~Ll 237 (260)
T PF03631_consen 191 WRAALPGALFAAVLWFLLSYGFSLYLSYVS--SYSSVYG---SLGSLIILLL 237 (260)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhc--ccchhhh---hHHHHHHHHH
Confidence 445555666666777777777764444433 4444443 3444444443
No 95
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=29.79 E-value=59 Score=33.14 Aligned_cols=49 Identities=18% Similarity=0.271 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHhcCCCchhHHHHHhhhCchhhhhhhh
Q 043307 41 WLRVILYVVCLLVGQSAATLLGRLYYDKGGNSKWMATFVQSAGFPILLPVLC 92 (248)
Q Consensus 41 w~lv~~~~~~l~~G~~~~~LL~r~Yy~~gG~s~W~~t~vqtagfPlll~~~~ 92 (248)
|..+.+..+..+++-...+..-+.+ .-++-|...|+-+++||++...++
T Consensus 385 ~n~l~~~Vvas~~~i~~~~~~~~~~---~~~~~Wk~~Wv~~a~W~~l~~~iL 433 (518)
T KOG2568|consen 385 TNTLAFSVVASFAFILVETIFYSIM---SCNKDWKERWVDTAFWPLLFFLIL 433 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHhhhhhccHHHHHHHHH
Confidence 4555555555555555554444433 667899999999999997654443
No 96
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=28.29 E-value=30 Score=32.88 Aligned_cols=65 Identities=12% Similarity=-0.010 Sum_probs=58.8
Q ss_pred HHHHHHhHHHHHhhhcccchhhHHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh
Q 043307 119 GLLLTGDNMMYSYGLLYLPLSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLA 183 (248)
Q Consensus 119 Gvl~a~~n~lYa~gl~yLp~ST~sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll~ 183 (248)
.++..+.|+.-..-+....+-|++.....|-++..+.++++.+++.|+.++.+..+..+|..+..
T Consensus 242 sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~ 306 (316)
T KOG1441|consen 242 SVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYS 306 (316)
T ss_pred HHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHH
Confidence 37778888888889999999999999999999999999999999999999999999999988864
No 97
>COG3296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.54 E-value=2.3e+02 Score=24.18 Aligned_cols=48 Identities=29% Similarity=0.285 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 043307 168 IFNSLVLLTISATLLAVNADSENTSGVSKGNYVIGFLCTLGASATYSLYLSLLQLSFE 225 (248)
Q Consensus 168 ~insvvLlt~g~~Ll~l~~~s~~~~~~~~~~y~lGf~~tL~Asalygl~l~L~ql~f~ 225 (248)
++.|.||..+|..+-+.+.+ ....+|++.++.+- ++.+.+++.++++-
T Consensus 73 ~ivs~vLil~g~~la~t~~~---------~i~~ig~~l~li~i-l~~~alsi~~lv~t 120 (143)
T COG3296 73 SIVSFVLILAGVFLAATDIS---------FIIIIGFFLTLIGI-LSIFALSILSLVLT 120 (143)
T ss_pred HHHHHHHHHHHHHHHhhcch---------hHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 34677777777775433222 13578998886543 44555565655543
No 98
>PRK12664 putative monovalent cation/H+ antiporter subunit D; Reviewed
Probab=24.85 E-value=2.3e+02 Score=28.78 Aligned_cols=52 Identities=17% Similarity=0.282 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhcccchhhHHHHHhhhhHHHHHHHHHHhccccch
Q 043307 112 VCLYVAFGLLLTGDNMMYSYGLLYLPLSTYSLLCATQLAFNAFFSFFLNSQKFTP 166 (248)
Q Consensus 112 ~~~~~~lGvl~a~~n~lYa~gl~yLp~ST~sLi~sTqL~FTAiFs~li~~~kfT~ 166 (248)
..+++.+|+.. +.++. +-..|.|..+-.++.|.|+.+.+.++++..++++.+
T Consensus 388 a~l~i~lGi~~--~~~l~-~~~~~~~y~~~~~~~~~~ll~~~~l~f~~~~~~~~~ 439 (527)
T PRK12664 388 VLICVVLGMFN--SYLLF-YNLPSFVYTLKSVALQLGLILGTTLLFICLRKLFLG 439 (527)
T ss_pred HHHHHHHHHHH--HHHhc-cCCccccccHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 44555555433 34443 566688998888999999999999999988888887
No 99
>PF07695 7TMR-DISM_7TM: 7TM diverse intracellular signalling; InterPro: IPR011623 This entry represents the transmembrane region of the 7TM-DISM (7TM Receptors with Diverse Intracellular Signalling Modules) [].
Probab=24.49 E-value=3.8e+02 Score=21.70 Aligned_cols=25 Identities=8% Similarity=0.170 Sum_probs=17.1
Q ss_pred HhccccchHHHHHHHHHHHHHHHHh
Q 043307 159 LNSQKFTPFIFNSLVLLTISATLLA 183 (248)
Q Consensus 159 i~~~kfT~~~insvvLlt~g~~Ll~ 183 (248)
..|+|-.+....+.....++...-.
T Consensus 146 ~~~~~~a~~~~~~~~~~~~~~~~~~ 170 (205)
T PF07695_consen 146 RKGNRPARYFLIGWLLFLLSSLIDI 170 (205)
T ss_pred HcCCccHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777777766533
No 100
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=24.22 E-value=6.7e+02 Score=24.40 Aligned_cols=127 Identities=17% Similarity=0.216 Sum_probs=73.6
Q ss_pred HhccchHHHHHHHHHhc----CCCchhHHHHHhhhCchhhhhhhhhc--ccCCCCCC----CCCCchHHHHHHHHHHHHH
Q 043307 52 LVGQSAATLLGRLYYDK----GGNSKWMATFVQSAGFPILLPVLCCF--SNGSRSTN----KTDPKISTLVCLYVAFGLL 121 (248)
Q Consensus 52 ~~G~~~~~LL~r~Yy~~----gG~s~W~~t~vqtagfPlll~~~~~~--~~~~~~~~----~~~p~~~~l~~~~~~lGvl 121 (248)
++++|.-+-+.-.||++ ++.+.|+.. +|.++|-+++-.+... ..++-... ..+....-+.+.-+..|++
T Consensus 188 vl~~c~~SgfAgvYfEkiLK~s~~s~wi~N-iqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~vw~vVl~~a~gGLl 266 (345)
T KOG2234|consen 188 VLVACFLSGFAGVYFEKILKGSNVSLWIRN-IQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIVWLVVLLNAVGGLL 266 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchHHHHH-HHHHHHHHHHHHHHHhhccccccccCCccccccHHHHHHHHHHhccchh
Confidence 34445555566679987 556677776 4666666554433322 11111000 1111122233333444444
Q ss_pred HHHhHHHHHhhhcccchhhHHHHHhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccC
Q 043307 122 LTGDNMMYSYGLLYLPLSTYSLLCATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNA 186 (248)
Q Consensus 122 ~a~~n~lYa~gl~yLp~ST~sLi~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll~l~~ 186 (248)
. +.=.+|.|--.=..-.+--.++|++-|+.+.+.+.|..-..++.+.+++..+....+
T Consensus 267 v-------s~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P 324 (345)
T KOG2234|consen 267 V-------SLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYP 324 (345)
T ss_pred H-------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCC
Confidence 3 333444443333333345678899999999999999999999999999988877443
No 101
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=23.15 E-value=9.1e+02 Score=25.54 Aligned_cols=123 Identities=17% Similarity=0.148 Sum_probs=54.5
Q ss_pred HHHHhccchHHHHHHHHHhcCCCchhHHHHHhhhCchhhhhhhhhcccCCCCCCCCCCchHHHHHHHHHHHH-HHHHhHH
Q 043307 49 VCLLVGQSAATLLGRLYYDKGGNSKWMATFVQSAGFPILLPVLCCFSNGSRSTNKTDPKISTLVCLYVAFGL-LLTGDNM 127 (248)
Q Consensus 49 ~~l~~G~~~~~LL~r~Yy~~gG~s~W~~t~vqtagfPlll~~~~~~~~~~~~~~~~~p~~~~l~~~~~~lGv-l~a~~n~ 127 (248)
++..++...+.++.-+.-|+=|+|+.+....-.++.-.++.. +.+ ...-++...+++|. ..+..+.
T Consensus 602 ~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~--~~~-----------s~~~ll~~~~l~g~~~~~~~~~ 668 (742)
T TIGR01299 602 FLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLS--FGN-----------SESAMIALLCLFGGLSIAAWNA 668 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH--HHc-----------cHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445555555555556877776544333333322221 211 11122223333333 3345666
Q ss_pred HHHhhhcccchhhHH----HHHhhh----hHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhc
Q 043307 128 MYSYGLLYLPLSTYS----LLCATQ----LAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAV 184 (248)
Q Consensus 128 lYa~gl~yLp~ST~s----Li~sTq----L~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll~l 184 (248)
+|.+.....|...-+ +..... .+-..+..+++....-.++.+.+++++..+.+.+-+
T Consensus 669 ~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll~~~L 733 (742)
T TIGR01299 669 LDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLLALKL 733 (742)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhC
Confidence 777766666755332 222221 122222233433333345566666665555444444
No 102
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=22.77 E-value=3.2e+02 Score=26.84 Aligned_cols=36 Identities=17% Similarity=0.220 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcc
Q 043307 150 AFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVN 185 (248)
Q Consensus 150 ~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll~l~ 185 (248)
+...+.-+++-|-+....++..+++.++|..++++.
T Consensus 74 ~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~ 109 (402)
T PF02487_consen 74 LVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFS 109 (402)
T ss_pred HHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeec
Confidence 334455667777777788888888888887777664
No 103
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=22.47 E-value=8.6e+02 Score=25.22 Aligned_cols=128 Identities=15% Similarity=0.220 Sum_probs=0.0
Q ss_pred hhhhhcccchhHHHHHHHHHHHHhccchHHHHHHHHHhcCCCchhHHHHHhhhCchhhhhhhhhcccCCCC-CCCCCCch
Q 043307 30 WRFLKLKHYKWWLRVILYVVCLLVGQSAATLLGRLYYDKGGNSKWMATFVQSAGFPILLPVLCCFSNGSRS-TNKTDPKI 108 (248)
Q Consensus 30 ~~~~~~~~~~~w~lv~~~~~~l~~G~~~~~LL~r~Yy~~gG~s~W~~t~vqtagfPlll~~~~~~~~~~~~-~~~~~p~~ 108 (248)
+|....|.+. +-..+..+..++....++++.+....+++=|-=.--+.-..++++++..+|..|+++++ ..+..+..
T Consensus 156 sEl~p~k~R~--~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~ 233 (599)
T PF06609_consen 156 SELVPNKWRG--LGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKR 233 (599)
T ss_pred HHhcccchhh--hHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHH
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhc-----ccchhhHHHHHhhhhHHHHHHHHHH
Q 043307 109 STLVCLYVAFGLLLTGDNMMYSYGLL-----YLPLSTYSLLCATQLAFNAFFSFFL 159 (248)
Q Consensus 109 ~~l~~~~~~lGvl~a~~n~lYa~gl~-----yLp~ST~sLi~sTqL~FTAiFs~li 159 (248)
.++.-+=.+.++|+...--++-.|+. +-|.++...|.-.=+.+..+-++.+
T Consensus 234 ~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~ 289 (599)
T PF06609_consen 234 EQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVV 289 (599)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHH
No 104
>PF08041 PetM: PetM family of cytochrome b6f complex subunit 7; InterPro: IPR012595 This family consists of the PetM family of cytochrome b6f complex subunit IV. The cytochrome b6f complex consists of 7 subunits and contains 2 beta haem's and 1 chlorophyll alpha per cytochrome f. It is highly active in transferring electrons from decylplastoquinol to oxidised plastocyanin [].; GO: 0009512 cytochrome b6f complex; PDB: 2ZT9_F 1Q90_M 2E76_F 2E75_F 2E74_F 2D2C_S 1VF5_S.
Probab=21.46 E-value=94 Score=20.02 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=19.5
Q ss_pred HHHHHHHHHhccchHHHHHHHHHhcCC
Q 043307 44 VILYVVCLLVGQSAATLLGRLYYDKGG 70 (248)
Q Consensus 44 v~~~~~~l~~G~~~~~LL~r~Yy~~gG 70 (248)
-.++..+.++|-+.+.+|.|+ |||
T Consensus 7 a~i~~~lvlvGla~Gf~LLki---QG~ 30 (31)
T PF08041_consen 7 AVICFGLVLVGLALGFVLLKI---QGG 30 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT---TT-
T ss_pred HHHHHHHHHHHHHHHHHhhee---ecC
Confidence 357888999999999999997 554
No 105
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=21.43 E-value=5.1e+02 Score=22.04 Aligned_cols=26 Identities=27% Similarity=0.325 Sum_probs=17.8
Q ss_pred HHHHHHHHhccchHHHHHHHHHhcCC
Q 043307 45 ILYVVCLLVGQSAATLLGRLYYDKGG 70 (248)
Q Consensus 45 ~~~~~~l~~G~~~~~LL~r~Yy~~gG 70 (248)
.+......+|...++.+.....++.|
T Consensus 126 ~~~~~~~~~g~~~~~~~~~~~~~~~~ 151 (352)
T cd06174 126 GLFSAGFGLGALLGPLLGGLLAESLG 151 (352)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455566677778888877777665
No 106
>PRK11383 hypothetical protein; Provisional
Probab=20.99 E-value=5.4e+02 Score=22.10 Aligned_cols=17 Identities=29% Similarity=0.475 Sum_probs=10.2
Q ss_pred CCcccchhHHHHHHHHH
Q 043307 195 SKGNYVIGFLCTLGASA 211 (248)
Q Consensus 195 ~~~~y~lGf~~tL~Asa 211 (248)
+++-|...|++.|.|++
T Consensus 103 EKGfY~~af~lsLFgai 119 (145)
T PRK11383 103 EKGFYGLAFFLSLFGAV 119 (145)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 35567666666665553
No 107
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=20.24 E-value=5.7e+02 Score=22.13 Aligned_cols=14 Identities=29% Similarity=0.320 Sum_probs=7.8
Q ss_pred HHHHHHHHhccccc
Q 043307 152 NAFFSFFLNSQKFT 165 (248)
Q Consensus 152 TAiFs~li~~~kfT 165 (248)
.++..++..|+|++
T Consensus 189 i~~~~~~~lkkk~~ 202 (206)
T PF06570_consen 189 IAFALRFYLKKKYN 202 (206)
T ss_pred HHHHHHHHHHHHhC
Confidence 34455566666654
Done!