Query 043307
Match_columns 248
No_of_seqs 152 out of 218
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 05:50:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043307.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043307hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 97.8 0.00012 4.2E-09 57.0 9.6 68 119-186 37-105 (110)
2 2i68_A Protein EMRE; transmemb 97.8 4.1E-05 1.4E-09 62.5 6.4 67 120-186 38-105 (137)
3 1pw4_A Glycerol-3-phosphate tr 16.8 4.8E+02 0.016 22.1 19.3 28 43-70 156-183 (451)
4 3o7q_A L-fucose-proton symport 16.5 4.9E+02 0.017 22.0 17.2 28 44-71 155-183 (438)
5 2gfp_A EMRD, multidrug resista 15.8 4.8E+02 0.016 21.7 8.8 36 47-85 129-164 (375)
6 3d31_C Sulfate/molybdate ABC t 8.6 2.2E+02 0.0076 24.1 3.1 11 56-66 52-62 (295)
7 1q90_M Cytochrome B6F complex 6.8 3E+02 0.01 17.6 2.3 20 45-64 11-30 (39)
8 1vf5_F Protein PET M; photosyn 6.7 2.7E+02 0.0093 17.5 2.0 20 45-64 10-29 (35)
9 3din_D Preprotein translocase 4.7 8.6E+02 0.029 16.4 4.0 28 201-228 28-55 (65)
10 2h80_A STAR-related lipid tran 4.6 2.4E+02 0.0083 20.8 0.9 9 77-85 26-34 (81)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.82 E-value=0.00012 Score=57.05 Aligned_cols=68 Identities=9% Similarity=0.156 Sum_probs=61.1
Q ss_pred HHHHHHhHHHHHhhhcccchhhHHHH-HhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccC
Q 043307 119 GLLLTGDNMMYSYGLLYLPLSTYSLL-CATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNA 186 (248)
Q Consensus 119 Gvl~a~~n~lYa~gl~yLp~ST~sLi-~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll~l~~ 186 (248)
.+.++..-++++++++++|.|+..-+ ..+..+++++.+.++.+|++|+.++.++++..+|..++.+.+
T Consensus 37 ~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 34566777899999999999998777 899999999999999999999999999999999999987654
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=97.77 E-value=4.1e-05 Score=62.54 Aligned_cols=67 Identities=9% Similarity=0.180 Sum_probs=49.1
Q ss_pred HHHHHhHHHHHhhhcccchhhHHHH-HhhhhHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccC
Q 043307 120 LLLTGDNMMYSYGLLYLPLSTYSLL-CATQLAFNAFFSFFLNSQKFTPFIFNSLVLLTISATLLAVNA 186 (248)
Q Consensus 120 vl~a~~n~lYa~gl~yLp~ST~sLi-~sTqL~FTAiFs~li~~~kfT~~~insvvLlt~g~~Ll~l~~ 186 (248)
+.++..-++++++++++|+|+..-+ .....++++++++++.+|++|+.++.++++..+|..++...+
T Consensus 38 ~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 38 ICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4566677899999999999977776 899999999999999999999999999999999999988754
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=16.77 E-value=4.8e+02 Score=22.09 Aligned_cols=28 Identities=21% Similarity=-0.006 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHhcCC
Q 043307 43 RVILYVVCLLVGQSAATLLGRLYYDKGG 70 (248)
Q Consensus 43 lv~~~~~~l~~G~~~~~LL~r~Yy~~gG 70 (248)
...+......+|...+++++....++.|
T Consensus 156 ~~~~~~~~~~~g~~~g~~~~~~l~~~~g 183 (451)
T 1pw4_A 156 IVSVWNCAHNVGGGIPPLLFLLGMAWFN 183 (451)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344556667788888888876556555
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=16.53 E-value=4.9e+02 Score=22.02 Aligned_cols=28 Identities=14% Similarity=0.078 Sum_probs=19.6
Q ss_pred HHHHHHHHHhccchHHHHHHHHH-hcCCC
Q 043307 44 VILYVVCLLVGQSAATLLGRLYY-DKGGN 71 (248)
Q Consensus 44 v~~~~~~l~~G~~~~~LL~r~Yy-~~gG~ 71 (248)
..+.....-+|...+++++.+.. +++|.
T Consensus 155 ~~~~~~~~~~g~~~g~~~~~~l~~~~~~~ 183 (438)
T 3o7q_A 155 LNLAQTFNSFGAIIAVVFGQSLILSNVPH 183 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHTSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 44555666778888888888777 55554
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=15.84 E-value=4.8e+02 Score=21.65 Aligned_cols=36 Identities=22% Similarity=0.248 Sum_probs=18.4
Q ss_pred HHHHHHhccchHHHHHHHHHhcCCCchhHHHHHhhhCch
Q 043307 47 YVVCLLVGQSAATLLGRLYYDKGGNSKWMATFVQSAGFP 85 (248)
Q Consensus 47 ~~~~l~~G~~~~~LL~r~Yy~~gG~s~W~~t~vqtagfP 85 (248)
......+|...+++++.+-.++.| |-..+.-.+...
T Consensus 129 ~~~~~~~g~~~~~~~~~~l~~~~~---~~~~~~~~~~~~ 164 (375)
T 2gfp_A 129 LNMGILVSPLLAPLIGGLLDTMWN---WRACYLFLLVLC 164 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHhcc---HHHHHHHHHHHH
Confidence 334445566677777665554322 544444333333
No 6
>3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: f.58.1.1
Probab=8.59 E-value=2.2e+02 Score=24.11 Aligned_cols=11 Identities=18% Similarity=0.093 Sum_probs=5.4
Q ss_pred chHHHHHHHHH
Q 043307 56 SAATLLGRLYY 66 (248)
Q Consensus 56 ~~~~LL~r~Yy 66 (248)
...|++.-++.
T Consensus 52 ~~~P~~~~~~~ 62 (295)
T 3d31_C 52 IFLTLSNMIFE 62 (295)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44555554444
No 7
>1q90_M Cytochrome B6F complex subunit PETM; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.25.1
Probab=6.83 E-value=3e+02 Score=17.63 Aligned_cols=20 Identities=30% Similarity=0.303 Sum_probs=16.9
Q ss_pred HHHHHHHHhccchHHHHHHH
Q 043307 45 ILYVVCLLVGQSAATLLGRL 64 (248)
Q Consensus 45 ~~~~~~l~~G~~~~~LL~r~ 64 (248)
.++..+.++|-+.+.+|.|+
T Consensus 11 ~i~~~L~LvGla~Gf~LLki 30 (39)
T 1q90_M 11 LTMVGMTLVGLAIGFVLLRV 30 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 46778889999999999886
No 8
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=6.72 E-value=2.7e+02 Score=17.45 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=16.7
Q ss_pred HHHHHHHHhccchHHHHHHH
Q 043307 45 ILYVVCLLVGQSAATLLGRL 64 (248)
Q Consensus 45 ~~~~~~l~~G~~~~~LL~r~ 64 (248)
.++..+.++|-+.+.+|.|+
T Consensus 10 ~i~~~LvLvGla~Gf~LLki 29 (35)
T 1vf5_F 10 LLSFGLIFVGWGLGVLLLKI 29 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhee
Confidence 46778888999999999885
No 9
>3din_D Preprotein translocase subunit SECE; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8}
Probab=4.67 E-value=8.6e+02 Score=16.38 Aligned_cols=28 Identities=29% Similarity=0.373 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043307 201 IGFLCTLGASATYSLYLSLLQLSFEKVI 228 (248)
Q Consensus 201 lGf~~tL~Asalygl~l~L~ql~f~Kv~ 228 (248)
--.+..+..+++.++++.++...|.+.+
T Consensus 28 ~~T~vViv~~~i~~~~i~~vD~~~~~~~ 55 (65)
T 3din_D 28 TSFGVVLVILAVTSVYFFVLDFIFSGVV 55 (65)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677778888888888877777654
No 10
>2h80_A STAR-related lipid transfer protein 13; helical bundle, lipid binding protein; NMR {Homo sapiens} SCOP: a.60.1.3 PDB: 2jw2_A
Probab=4.61 E-value=2.4e+02 Score=20.81 Aligned_cols=9 Identities=44% Similarity=1.169 Sum_probs=0.0
Q ss_pred HHHhhhCch
Q 043307 77 TFVQSAGFP 85 (248)
Q Consensus 77 t~vqtagfP 85 (248)
.|+.-||||
T Consensus 26 ~WLRaaGFP 34 (81)
T 2h80_A 26 DWLRAAGFP 34 (81)
T ss_dssp HHHHHTTCH
T ss_pred HHHHHcCCc
Done!