Query 043307
Match_columns 248
No_of_seqs 152 out of 218
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 05:50:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043307.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043307hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pv7a_ f.38.1.2 (A:) Lactose 13.4 2.4E+02 0.018 20.8 13.5 64 156-230 280-343 (417)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 10.0 3.5E+02 0.025 20.6 18.5 28 45-72 155-182 (447)
3 d1v92a_ a.5.2.3 (A:) NSFL1 (p9 6.9 75 0.0054 19.1 1.0 7 64-70 40-46 (46)
4 d1pw4a_ f.38.1.1 (A:) Glycerol 6.8 4.8E+02 0.035 19.7 12.9 12 74-85 289-300 (447)
5 d1pv7a_ f.38.1.2 (A:) Lactose 6.2 2.2E+02 0.016 21.0 3.9 48 35-82 4-51 (417)
6 d2dyna_ b.55.1.1 (A:) Dynamin 6.2 88 0.0064 20.7 1.2 13 73-85 98-110 (111)
7 d1kqfc_ f.21.1.1 (C:) Formate 6.0 1.4E+02 0.0099 22.3 2.4 60 33-92 10-69 (216)
8 d1l7va_ f.22.1.1 (A:) ABC tran 5.1 6.8E+02 0.05 19.9 6.7 23 207-229 60-82 (324)
9 d1fftc_ f.25.1.1 (C:) Cytochro 4.8 3.6E+02 0.027 19.5 4.3 15 167-181 51-65 (185)
10 d1v54c_ f.25.1.1 (C:) Mitochon 3.7 8.3E+02 0.061 18.6 6.5 17 39-55 13-29 (259)
No 1
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=13.44 E-value=2.4e+02 Score=20.76 Aligned_cols=64 Identities=3% Similarity=-0.113 Sum_probs=29.6
Q ss_pred HHHHhccccchHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 043307 156 SFFLNSQKFTPFIFNSLVLLTISATLLAVNADSENTSGVSKGNYVIGFLCTLGASATYSLYLSLLQLSFEKVIKK 230 (248)
Q Consensus 156 s~li~~~kfT~~~insvvLlt~g~~Ll~l~~~s~~~~~~~~~~y~lGf~~tL~Asalygl~l~L~ql~f~Kv~k~ 230 (248)
..+..|.+-.+....+.++..++..++...++ .+.-.++.+...+.++...+...-...+..++
T Consensus 280 ~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~ 343 (417)
T d1pv7a_ 280 PLIINRIGGKNALLLAGTIMSVRIIGSSFATS-----------ALEVVILKTLHMFEVPFLLVGCFKYITSQFEV 343 (417)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCC-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCG
T ss_pred hhhhcccccccchhhhHHHHHHhhhccccccc-----------cchhhHHHHHHHHHHHHHHHHHHHHHHHHCCH
Confidence 33444444444455555555555555444321 22223333444555555555555444555443
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=9.99 E-value=3.5e+02 Score=20.57 Aligned_cols=28 Identities=18% Similarity=-0.031 Sum_probs=16.0
Q ss_pred HHHHHHHHhccchHHHHHHHHHhcCCCc
Q 043307 45 ILYVVCLLVGQSAATLLGRLYYDKGGNS 72 (248)
Q Consensus 45 ~~~~~~l~~G~~~~~LL~r~Yy~~gG~s 72 (248)
.+......+|...++++.-+-.+..+.-
T Consensus 155 ~~~~~~~~~g~~i~~~~~~~~~~~~~~w 182 (447)
T d1pw4a_ 155 SVWNCAHNVGGGIPPLLFLLGMAWFNDW 182 (447)
T ss_dssp HHHHHHHHHHHTSHHHHHHHHHHHTCCS
T ss_pred cccccccchhhhhhhhhhhhHhhhhhcc
Confidence 3444555566677777766655554443
No 3
>d1v92a_ a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=6.93 E-value=75 Score=19.10 Aligned_cols=7 Identities=43% Similarity=1.293 Sum_probs=4.1
Q ss_pred HHHhcCC
Q 043307 64 LYYDKGG 70 (248)
Q Consensus 64 ~Yy~~gG 70 (248)
.||++||
T Consensus 40 ~yfe~gg 46 (46)
T d1v92a_ 40 SFYEDGG 46 (46)
T ss_dssp HHHHTCC
T ss_pred HHHhcCC
Confidence 4566665
No 4
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=6.80 E-value=4.8e+02 Score=19.66 Aligned_cols=12 Identities=33% Similarity=0.761 Sum_probs=4.9
Q ss_pred hHHHHHhhhCch
Q 043307 74 WMATFVQSAGFP 85 (248)
Q Consensus 74 W~~t~vqtagfP 85 (248)
|+......++..
T Consensus 289 ~~~~~~~~~~~~ 300 (447)
T d1pw4a_ 289 WAYFLYEYAGIP 300 (447)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhhhcchhhhhh
Confidence 444444444433
No 5
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=6.24 E-value=2.2e+02 Score=20.99 Aligned_cols=48 Identities=15% Similarity=0.209 Sum_probs=28.5
Q ss_pred cccchhHHHHHHHHHHHHhccchHHHHHHHHHhcCCCchhHHHHHhhh
Q 043307 35 LKHYKWWLRVILYVVCLLVGQSAATLLGRLYYDKGGNSKWMATFVQSA 82 (248)
Q Consensus 35 ~~~~~~w~lv~~~~~~l~~G~~~~~LL~r~Yy~~gG~s~W~~t~vqta 82 (248)
.|+++.|++.....+..+.-....+.+.-++-++-|-+..-..++.++
T Consensus 4 lkn~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~ 51 (417)
T d1pv7a_ 4 LKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAA 51 (417)
T ss_dssp HHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHH
Confidence 466777887766555444433455666544445557676666666654
No 6
>d2dyna_ b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.22 E-value=88 Score=20.70 Aligned_cols=13 Identities=31% Similarity=0.976 Sum_probs=12.0
Q ss_pred hhHHHHHhhhCch
Q 043307 73 KWMATFVQSAGFP 85 (248)
Q Consensus 73 ~W~~t~vqtagfP 85 (248)
.|+.++.+.+.+|
T Consensus 98 ~W~~al~~A~~~p 110 (111)
T d2dyna_ 98 SWKASFLRAGVYP 110 (111)
T ss_dssp HHHHHHHHTTCEE
T ss_pred HHHHHHHHhccCC
Confidence 8999999999888
No 7
>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]}
Probab=6.01 E-value=1.4e+02 Score=22.32 Aligned_cols=60 Identities=15% Similarity=0.129 Sum_probs=33.6
Q ss_pred hhcccchhHHHHHHHHHHHHhccchHHHHHHHHHhcCCCchhHHHHHhhhCchhhhhhhh
Q 043307 33 LKLKHYKWWLRVILYVVCLLVGQSAATLLGRLYYDKGGNSKWMATFVQSAGFPILLPVLC 92 (248)
Q Consensus 33 ~~~~~~~~w~lv~~~~~~l~~G~~~~~LL~r~Yy~~gG~s~W~~t~vqtagfPlll~~~~ 92 (248)
+...|.-||..++.-+++++.|-....--...-..-.|...|...+-..+|+.++...++
T Consensus 10 ~~~~Rl~HW~~a~~~i~L~~TGl~l~~~~~~~~~~~~~~~~~~~~~H~~~g~~~~~~~l~ 69 (216)
T d1kqfc_ 10 KFIDRACHWTVVICFFLVALSGISFFFPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMF 69 (216)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHCTTCGGGGGTTSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCcchhhhHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567789888877777777743321001111233445566666677777776555443
No 8
>d1l7va_ f.22.1.1 (A:) ABC transporter involved in vitamin B12 uptake, BtuC {Escherichia coli [TaxId: 562]}
Probab=5.05 E-value=6.8e+02 Score=19.92 Aligned_cols=23 Identities=9% Similarity=-0.018 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 043307 207 LGASATYSLYLSLLQLSFEKVIK 229 (248)
Q Consensus 207 L~Asalygl~l~L~ql~f~Kv~k 229 (248)
+.++.+-|..+++....+|.+.|
T Consensus 60 ~l~a~l~Ga~La~sG~~lQ~~~r 82 (324)
T d1l7va_ 60 TLAVLLVGAALAISGAVMQALFE 82 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Confidence 44444444444445555554444
No 9
>d1fftc_ f.25.1.1 (C:) Cytochrome O ubiquinol oxidase, subunit III {Escherichia coli [TaxId: 562]}
Probab=4.81 E-value=3.6e+02 Score=19.54 Aligned_cols=15 Identities=27% Similarity=0.381 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHH
Q 043307 167 FIFNSLVLLTISATL 181 (248)
Q Consensus 167 ~~insvvLlt~g~~L 181 (248)
..+|..+|++.|..+
T Consensus 51 ~~~nT~vLl~SS~~~ 65 (185)
T d1fftc_ 51 VLVETFLLLFSSITY 65 (185)
T ss_dssp HHHHHHHHGGGTTTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 345666655544443
No 10
>d1v54c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit III {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.71 E-value=8.3e+02 Score=18.64 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=11.2
Q ss_pred hhHHHHHHHHHHHHhcc
Q 043307 39 KWWLRVILYVVCLLVGQ 55 (248)
Q Consensus 39 ~~w~lv~~~~~~l~~G~ 55 (248)
.|=+...++.+.+..|-
T Consensus 13 pWP~~~s~~~~~~~~g~ 29 (259)
T d1v54c_ 13 PWPLTGALSALLMTSGL 29 (259)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 34456668877777773
Done!