BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043310
(359 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SNZ|A Chain A, Crystal Structure Of Apo Human Galactose Mutarotase
pdb|1SNZ|B Chain B, Crystal Structure Of Apo Human Galactose Mutarotase
pdb|1SO0|A Chain A, Crystal Structure Of Human Galactose Mutarotase Complexed
With Galactose
pdb|1SO0|B Chain B, Crystal Structure Of Human Galactose Mutarotase Complexed
With Galactose
pdb|1SO0|C Chain C, Crystal Structure Of Human Galactose Mutarotase Complexed
With Galactose
pdb|1SO0|D Chain D, Crystal Structure Of Human Galactose Mutarotase Complexed
With Galactose
Length = 344
Score = 258 bits (659), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 130/325 (40%), Positives = 204/325 (62%), Gaps = 8/325 (2%)
Query: 35 YKLKRGDLSLKFTNYGATMLSAVIPDKNGKLADIVLGFDSVKDYKTDNTYFGAIVGRVAN 94
++L+ L + ++G T+ + + D+ G+ +D+VLGF ++ Y YFGA++GRVAN
Sbjct: 24 FQLQSDLLRVDIISWGCTITALEVKDRQGRASDVVLGFAELEGYLQKQPYFGAVIGRVAN 83
Query: 95 RISRAQFTLNGTRYQLINNDGDNMLHGGPRGFSEVIWKVKSHEVNSHITFTYNSLEGEQG 154
RI++ F ++G Y L N N LHGG RGF +V+W + +++ + F+ S +GE+G
Sbjct: 84 RIAKGTFKVDGKEYHLAINKEPNSLHGGVRGFDKVLWTPRV--LSNGVQFSRISPDGEEG 141
Query: 155 FPGDLAVSVTYMFVGENNLVVKMKAKPLEKATPVNLALHTYWNLGGHSSGDIFSHKLQLF 214
+PG+L V VTY G L+V +A+ +ATPVNL H+Y+NL G +S +I H++ +
Sbjct: 142 YPGELKVWVTYTLDG-GELIVNYRAQ-ASQATPVNLTNHSYFNLAGQASPNINDHEVTIE 199
Query: 215 GSHVTPVNDRLIPTGKITPVTGTPYDFLQPREIGSKFKELP-DGYDINYVLDNPNPEHLK 273
PV++ LIPTG++ PV GT +D +P E+G ++ +G+D N+ L +H
Sbjct: 200 ADTYLPVDETLIPTGEVAPVQGTAFDLRKPVELGKHLQDFHLNGFDHNFCLKGSKEKHF- 258
Query: 274 KVAVVSESVSGRKMELWTNKPGVQFYTSNML-GKVMGKDGFVYSNYAGFCLETQGFPDSV 332
A V + SGR +E++T +PGVQFYT N L G + GK+G VY ++GFCLETQ +PD+V
Sbjct: 259 -CARVHHAASGRVLEVYTTQPGVQFYTGNFLDGTLKGKNGAVYPKHSGFCLETQNWPDAV 317
Query: 333 NNPNFPSQVVNPGETYNHVMVYRFT 357
N P FP ++ PGE Y+H ++F+
Sbjct: 318 NQPRFPPVLLRPGEEYDHTTWFKFS 342
>pdb|1LUR|A Chain A, Crystal Structure Of The GalmALDOSE EPIMERASE HOMOLOGUE
From C. Elegans, Northeast Structural Genomics Target
Wr66
pdb|1LUR|B Chain B, Crystal Structure Of The GalmALDOSE EPIMERASE HOMOLOGUE
From C. Elegans, Northeast Structural Genomics Target
Wr66
Length = 339
Score = 159 bits (403), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 109/322 (33%), Positives = 154/322 (47%), Gaps = 14/322 (4%)
Query: 42 LSLKFTNYGATMLSAVIPDKNGKLADIVLGFDSVKDYKTDNTYFGAIVGRVANRISRAQF 101
L+ +GAT+ PDKNGK D+VLGFD++ +++ D G VGRVANRI +
Sbjct: 23 LTATLLPFGATLAKLTFPDKNGKNQDLVLGFDTIDEFEKDAASIGKTVGRVANRIKNSTL 82
Query: 102 TLNGTRYQLINNDGDNMLHGGPRGFSEVIWKVKSHEVNSHITFTYNSLEGEQGFPGDLAV 161
+G +Y N+G + LHGGP G W+V H S ++F+ + E + G PGD +
Sbjct: 83 HFDGKQYTXTPNNGPHYLHGGPNGLGYRKWEVVRHAPES-VSFSVRANEQDDGLPGDAKI 141
Query: 162 SVTYMFVGENNLVVKMKAKPLEKATPVNLAL--HTYWNLGGHSSGDIFSHKLQLFGSHVT 219
VTY N L+++ A TP LAL H YWNL G S + H L+
Sbjct: 142 DVTYTVNDRNQLIIEHHAT---CDTPGLLALTNHAYWNLDG--SDTVAEHFLEXEADEFV 196
Query: 220 PVNDRLIPTGKITPVTGTPYDFL---QPREIGSKFKELPDGYDINYVLDNPNPEHLKKVA 276
V+D PTG I VT T +DF Q +E G +EL D D + V+ P
Sbjct: 197 EVDDTFCPTGAIRSVTDTGFDFRSGKQLKESGKDAEELLD-LDNDLVITKKTPPSTPSTY 255
Query: 277 VVSESV-SGRKMELWTNKPGVQFYTSNMLGKVMGKDGFVYSNYAGFCLETQGFPDSVNNP 335
+ S SG ++ + T+ P + Y S L GK G Y +E Q + N
Sbjct: 256 LRFWSEKSGIELSITTSYPVIHLYASKFL-DCKGKKGEHYKANKALAIEPQFHSAAPNFD 314
Query: 336 NFPSQVVNPGETYNHVMVYRFT 357
+FP + PG+ Y +VY F+
Sbjct: 315 HFPDVSLRPGDHYCQEIVYTFS 336
>pdb|1L7J|A Chain A, X-Ray Structure Of Galactose Mutarotase From Lactococcus
Lactis (Apo)
pdb|1L7J|B Chain B, X-Ray Structure Of Galactose Mutarotase From Lactococcus
Lactis (Apo)
pdb|1L7K|A Chain A, X-Ray Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With Galactose
pdb|1L7K|B Chain B, X-Ray Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With Galactose
pdb|1MMU|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-Glucose
pdb|1MMU|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-Glucose
pdb|1MMX|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-Fucose
pdb|1MMX|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-Fucose
pdb|1MMY|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-Quinovose
pdb|1MMY|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-Quinovose
pdb|1MMZ|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With L-Arabinose
pdb|1MMZ|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With L-Arabinose
pdb|1MN0|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-xylose
pdb|1MN0|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Complexed With D-xylose
Length = 347
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 90/329 (27%), Positives = 154/329 (46%), Gaps = 23/329 (6%)
Query: 39 RGDLSLKFTNYGATMLSAVIPDKNGKLADIVLGFDSVKDYKTDNTYFGAIVGRVANRISR 98
+ +++ FTN GA ++ K+GK ++LGFDS K+Y + Y GA VG A RI
Sbjct: 20 KAGVTISFTNLGARIVDW---QKDGK--HLILGFDSAKEYLEKDAYPGATVGPTAGRIKD 74
Query: 99 AQFTLNGTRYQLINNDGDNMLHGGPRGFSEVIWKVKSHEVNS--HITFTYNSLEGEQGFP 156
++G Y L N+G LHGG +W + ++ + + F+ S +G G+P
Sbjct: 75 GLVKISGKDYILNQNEGPQTLHGGEESIHTKLWTYEVTDLGAEVQVKFSLVSNDGTNGYP 134
Query: 157 GDLAVSVTYMFVGENNLVVKMKAKPLEKATPVNLALHTYWNLGGHSSGDIFSHKLQLFGS 216
G + +SVT+ F +N + +A +K T N H Y+NL G +S + +H L+L S
Sbjct: 135 GKIEMSVTHSFDDDNKWKIHYEAIS-DKDTVFNPTGHVYFNLNGDASESVENHGLRLAAS 193
Query: 217 HVTPVNDRL-IPTGKITPVTGTPYDFLQPREIGSKFK------ELPDGYDINYVLDNPNP 269
P+ D+ I G I + T DF Q +++ + F +L G D ++LD
Sbjct: 194 RFVPLKDQTEIVRGDIVDIKNTDLDFRQEKQLSNAFNSNMEQVQLVKGIDHPFLLDQLGL 253
Query: 270 EHLKKVAVVSESVSGRKMELWTNKPGVQFYTSNM--LGKVMGKDGFVYSNYAGFCLETQG 327
+ + + ++ + ++T++P + +T+N LG + + V+ + G E Q
Sbjct: 254 DKEQARLTLDDT----SISVFTDQPSIVIFTANFGDLGTLYHEKKQVH--HGGITFECQV 307
Query: 328 FPDSVNNPNFPSQVVNPGETYNHVMVYRF 356
P S P + GE Y +Y
Sbjct: 308 SPGSEQIPELGDISLKAGEKYQATTIYSL 336
>pdb|1NS0|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant E304q Complexed With Galactose
pdb|1NS0|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant E304q Complexed With Galactose
pdb|1NS4|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant E304q Complexed With Glucose
pdb|1NS4|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant E304q Complexed With Glucose
Length = 347
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 89/329 (27%), Positives = 154/329 (46%), Gaps = 23/329 (6%)
Query: 39 RGDLSLKFTNYGATMLSAVIPDKNGKLADIVLGFDSVKDYKTDNTYFGAIVGRVANRISR 98
+ +++ FTN GA ++ K+GK ++LGFDS K+Y + Y GA VG A RI
Sbjct: 20 KAGVTISFTNLGARIVDW---QKDGK--HLILGFDSAKEYLEKDAYPGATVGPTAGRIKD 74
Query: 99 AQFTLNGTRYQLINNDGDNMLHGGPRGFSEVIWKVKSHEVNS--HITFTYNSLEGEQGFP 156
++G Y L N+G LHGG +W + ++ + + F+ S +G G+P
Sbjct: 75 GLVKISGKDYILNQNEGPQTLHGGEESIHTKLWTYEVTDLGAEVQVKFSLVSNDGTNGYP 134
Query: 157 GDLAVSVTYMFVGENNLVVKMKAKPLEKATPVNLALHTYWNLGGHSSGDIFSHKLQLFGS 216
G + +SVT+ F +N + +A +K T N H Y+NL G +S + +H L+L S
Sbjct: 135 GKIEMSVTHSFDDDNKWKIHYEAIS-DKDTVFNPTGHVYFNLNGDASESVENHGLRLAAS 193
Query: 217 HVTPVNDRL-IPTGKITPVTGTPYDFLQPREIGSKFK------ELPDGYDINYVLDNPNP 269
P+ D+ I G I + T DF Q +++ + F +L G D ++LD
Sbjct: 194 RFVPLKDQTEIVRGDIVDIKNTDLDFRQEKQLSNAFNSNMEQVQLVKGIDHPFLLDQLGL 253
Query: 270 EHLKKVAVVSESVSGRKMELWTNKPGVQFYTSNM--LGKVMGKDGFVYSNYAGFCLETQG 327
+ + + ++ + ++T++P + +T+N LG + + V+ + G + Q
Sbjct: 254 DKEQARLTLDDT----SISVFTDQPSIVIFTANFGDLGTLYHEKKQVH--HGGITFQCQV 307
Query: 328 FPDSVNNPNFPSQVVNPGETYNHVMVYRF 356
P S P + GE Y +Y
Sbjct: 308 SPGSEQIPELGDISLKAGEKYQATTIYSL 336
>pdb|1NS8|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant D243n Complexed With Galactose
pdb|1NS8|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant D243n Complexed With Galactose
pdb|1NSR|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant D243n Complexed With Glucose
pdb|1NSR|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant D243n Complexed With Glucose
Length = 347
Score = 118 bits (296), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 89/329 (27%), Positives = 154/329 (46%), Gaps = 23/329 (6%)
Query: 39 RGDLSLKFTNYGATMLSAVIPDKNGKLADIVLGFDSVKDYKTDNTYFGAIVGRVANRISR 98
+ +++ FTN GA ++ K+GK ++LGFDS K+Y + Y GA VG A RI
Sbjct: 20 KAGVTISFTNLGARIVDW---QKDGK--HLILGFDSAKEYLEKDAYPGATVGPTAGRIKD 74
Query: 99 AQFTLNGTRYQLINNDGDNMLHGGPRGFSEVIWKVKSHEVNS--HITFTYNSLEGEQGFP 156
++G Y L N+G LHGG +W + ++ + + F+ S +G G+P
Sbjct: 75 GLVKISGKDYILNQNEGPQTLHGGEESIHTKLWTYEVTDLGAEVQVKFSLVSNDGTNGYP 134
Query: 157 GDLAVSVTYMFVGENNLVVKMKAKPLEKATPVNLALHTYWNLGGHSSGDIFSHKLQLFGS 216
G + +SVT+ F +N + +A +K T N H Y+NL G +S + +H L+L S
Sbjct: 135 GKIEMSVTHSFDDDNKWKIHYEAIS-DKDTVFNPTGHVYFNLNGDASESVENHGLRLAAS 193
Query: 217 HVTPVNDRL-IPTGKITPVTGTPYDFLQPREIGSKFK------ELPDGYDINYVLDNPNP 269
P+ D+ I G I + T DF Q +++ + F +L G + ++LD
Sbjct: 194 RFVPLKDQTEIVRGDIVDIKNTDLDFRQEKQLSNAFNSNMEQVQLVKGINHPFLLDQLGL 253
Query: 270 EHLKKVAVVSESVSGRKMELWTNKPGVQFYTSNM--LGKVMGKDGFVYSNYAGFCLETQG 327
+ + + ++ + ++T++P + +T+N LG + + V+ + G E Q
Sbjct: 254 DKEQARLTLDDT----SISVFTDQPSIVIFTANFGDLGTLYHEKKQVH--HGGITFECQV 307
Query: 328 FPDSVNNPNFPSQVVNPGETYNHVMVYRF 356
P S P + GE Y +Y
Sbjct: 308 SPGSEQIPELGDISLKAGEKYQATTIYSL 336
>pdb|1NS2|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant E304a Complexed With Galactose
pdb|1NS2|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant E304a Complexed With Galactose
pdb|1NS7|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant E304a Complexed With Glucose
pdb|1NS7|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant E304a Complexed With Glucose
Length = 347
Score = 118 bits (295), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 89/329 (27%), Positives = 153/329 (46%), Gaps = 23/329 (6%)
Query: 39 RGDLSLKFTNYGATMLSAVIPDKNGKLADIVLGFDSVKDYKTDNTYFGAIVGRVANRISR 98
+ +++ FTN GA ++ K+GK ++LGFDS K+Y + Y GA VG A RI
Sbjct: 20 KAGVTISFTNLGARIVDW---QKDGK--HLILGFDSAKEYLEKDAYPGATVGPTAGRIKD 74
Query: 99 AQFTLNGTRYQLINNDGDNMLHGGPRGFSEVIWKVKSHEVNS--HITFTYNSLEGEQGFP 156
++G Y L N+G LHGG +W + ++ + + F+ S +G G+P
Sbjct: 75 GLVKISGKDYILNQNEGPQTLHGGEESIHTKLWTYEVTDLGAEVQVKFSLVSNDGTNGYP 134
Query: 157 GDLAVSVTYMFVGENNLVVKMKAKPLEKATPVNLALHTYWNLGGHSSGDIFSHKLQLFGS 216
G + +SVT+ F +N + +A +K T N H Y+NL G +S + +H L+L S
Sbjct: 135 GKIEMSVTHSFDDDNKWKIHYEAIS-DKDTVFNPTGHVYFNLNGDASESVENHGLRLAAS 193
Query: 217 HVTPVNDRL-IPTGKITPVTGTPYDFLQPREIGSKFK------ELPDGYDINYVLDNPNP 269
P+ D+ I G I + T DF Q +++ + F +L G D ++LD
Sbjct: 194 RFVPLKDQTEIVRGDIVDIKNTDLDFRQEKQLSNAFNSNMEQVQLVKGIDHPFLLDQLGL 253
Query: 270 EHLKKVAVVSESVSGRKMELWTNKPGVQFYTSNM--LGKVMGKDGFVYSNYAGFCLETQG 327
+ + + ++ + ++T++P + +T+N LG + + V+ + G Q
Sbjct: 254 DKEQARLTLDDT----SISVFTDQPSIVIFTANFGDLGTLYHEKKQVH--HGGITFACQV 307
Query: 328 FPDSVNNPNFPSQVVNPGETYNHVMVYRF 356
P S P + GE Y +Y
Sbjct: 308 SPGSEQIPELGDISLKAGEKYQATTIYSL 336
>pdb|1NSM|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant D243a Complexed With Galactose
pdb|1NSM|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant D243a Complexed With Galactose
pdb|1NSS|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant D243a Complexed With Glucose
pdb|1NSS|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant D243a Complexed With Glucose
Length = 347
Score = 117 bits (294), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 89/327 (27%), Positives = 153/327 (46%), Gaps = 19/327 (5%)
Query: 39 RGDLSLKFTNYGATMLSAVIPDKNGKLADIVLGFDSVKDYKTDNTYFGAIVGRVANRISR 98
+ +++ FTN GA ++ K+GK ++LGFDS K+Y + Y GA VG A RI
Sbjct: 20 KAGVTISFTNLGARIVDW---QKDGK--HLILGFDSAKEYLEKDAYPGATVGPTAGRIKD 74
Query: 99 AQFTLNGTRYQLINNDGDNMLHGGPRGFSEVIWKVKSHEVNS--HITFTYNSLEGEQGFP 156
++G Y L N+G LHGG +W + ++ + + F+ S +G G+P
Sbjct: 75 GLVKISGKDYILNQNEGPQTLHGGEESIHTKLWTYEVTDLGAEVQVKFSLVSNDGTNGYP 134
Query: 157 GDLAVSVTYMFVGENNLVVKMKAKPLEKATPVNLALHTYWNLGGHSSGDIFSHKLQLFGS 216
G + +SVT+ F +N + +A +K T N H Y+NL G +S + +H L+L S
Sbjct: 135 GKIEMSVTHSFDDDNKWKIHYEAIS-DKDTVFNPTGHVYFNLNGDASESVENHGLRLAAS 193
Query: 217 HVTPVNDRL-IPTGKITPVTGTPYDFLQPREIGSKFKELPDGYDINYVLDNPNPEHLKKV 275
P+ D+ I G I + T DF Q +++ + F + + V +P L ++
Sbjct: 194 RFVPLKDQTEIVRGDIVDIKNTDLDFRQEKQLSNAFN--SNMEQVQLVKGIAHPFLLDQL 251
Query: 276 AVVSE----SVSGRKMELWTNKPGVQFYTSNM--LGKVMGKDGFVYSNYAGFCLETQGFP 329
+ E ++ + ++T++P + +T+N LG + + V+ + G E Q P
Sbjct: 252 GLDKEQARLTLDDTSISVFTDQPSIVIFTANFGDLGTLYHEKKQVH--HGGITFECQVSP 309
Query: 330 DSVNNPNFPSQVVNPGETYNHVMVYRF 356
S P + GE Y +Y
Sbjct: 310 GSEQIPELGDISLKAGEKYQATTIYSL 336
>pdb|1NSU|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H96n Complexed With Galactose
pdb|1NSU|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H96n Complexed With Galactose
pdb|1NSV|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H96n Complexed With Glucose
pdb|1NSV|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H96n Complexed With Glucose
Length = 347
Score = 117 bits (293), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 89/329 (27%), Positives = 154/329 (46%), Gaps = 23/329 (6%)
Query: 39 RGDLSLKFTNYGATMLSAVIPDKNGKLADIVLGFDSVKDYKTDNTYFGAIVGRVANRISR 98
+ +++ FTN GA ++ K+GK ++LGFDS K+Y + Y GA VG A RI
Sbjct: 20 KAGVTISFTNLGARIVDW---QKDGK--HLILGFDSAKEYLEKDAYPGATVGPTAGRIKD 74
Query: 99 AQFTLNGTRYQLINNDGDNMLHGGPRGFSEVIWKVKSHEVNS--HITFTYNSLEGEQGFP 156
++G Y L N+G L+GG +W + ++ + + F+ S +G G+P
Sbjct: 75 GLVKISGKDYILNQNEGPQTLNGGEESIHTKLWTYEVTDLGAEVQVKFSLVSNDGTNGYP 134
Query: 157 GDLAVSVTYMFVGENNLVVKMKAKPLEKATPVNLALHTYWNLGGHSSGDIFSHKLQLFGS 216
G + +SVT+ F +N + +A +K T N H Y+NL G +S + +H L+L S
Sbjct: 135 GKIEMSVTHSFDDDNKWKIHYEAIS-DKDTVFNPTGHVYFNLNGDASESVENHGLRLAAS 193
Query: 217 HVTPVNDRL-IPTGKITPVTGTPYDFLQPREIGSKFK------ELPDGYDINYVLDNPNP 269
P+ D+ I G I + T DF Q +++ + F +L G D ++LD
Sbjct: 194 RFVPLKDQTEIVRGDIVDIKNTDLDFRQEKQLSNAFNSNMEQVQLVKGIDHPFLLDQLGL 253
Query: 270 EHLKKVAVVSESVSGRKMELWTNKPGVQFYTSNM--LGKVMGKDGFVYSNYAGFCLETQG 327
+ + + ++ + ++T++P + +T+N LG + + V+ + G E Q
Sbjct: 254 DKEQARLTLDDT----SISVFTDQPSIVIFTANFGDLGTLYHEKKQVH--HGGITFECQV 307
Query: 328 FPDSVNNPNFPSQVVNPGETYNHVMVYRF 356
P S P + GE Y +Y
Sbjct: 308 SPGSEQIPELGDISLKAGEKYQATTIYSL 336
>pdb|1NSX|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H170n Complexed With Galactose
pdb|1NSX|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H170n Complexed With Galactose
pdb|1NSZ|A Chain A, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H170n Complexed With Glucose
pdb|1NSZ|B Chain B, Crystal Structure Of Galactose Mutarotase From Lactococcus
Lactis Mutant H170n Complexed With Glucose
Length = 347
Score = 117 bits (293), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 89/329 (27%), Positives = 154/329 (46%), Gaps = 23/329 (6%)
Query: 39 RGDLSLKFTNYGATMLSAVIPDKNGKLADIVLGFDSVKDYKTDNTYFGAIVGRVANRISR 98
+ +++ FTN GA ++ K+GK ++LGFDS K+Y + Y GA VG A RI
Sbjct: 20 KAGVTISFTNLGARIVDW---QKDGK--HLILGFDSAKEYLEKDAYPGATVGPTAGRIKD 74
Query: 99 AQFTLNGTRYQLINNDGDNMLHGGPRGFSEVIWKVKSHEVNS--HITFTYNSLEGEQGFP 156
++G Y L N+G LHGG +W + ++ + + F+ S +G G+P
Sbjct: 75 GLVKISGKDYILNQNEGPQTLHGGEESIHTKLWTYEVTDLGAEVQVKFSLVSNDGTNGYP 134
Query: 157 GDLAVSVTYMFVGENNLVVKMKAKPLEKATPVNLALHTYWNLGGHSSGDIFSHKLQLFGS 216
G + +SVT+ F +N + +A +K T N + Y+NL G +S + +H L+L S
Sbjct: 135 GKIEMSVTHSFDDDNKWKIHYEAIS-DKDTVFNPTGNVYFNLNGDASESVENHGLRLAAS 193
Query: 217 HVTPVNDRL-IPTGKITPVTGTPYDFLQPREIGSKFK------ELPDGYDINYVLDNPNP 269
P+ D+ I G I + T DF Q +++ + F +L G D ++LD
Sbjct: 194 RFVPLKDQTEIVRGDIVDIKNTDLDFRQEKQLSNAFNSNMEQVQLVKGIDHPFLLDQLGL 253
Query: 270 EHLKKVAVVSESVSGRKMELWTNKPGVQFYTSNM--LGKVMGKDGFVYSNYAGFCLETQG 327
+ + + ++ + ++T++P + +T+N LG + + V+ + G E Q
Sbjct: 254 DKEQARLTLDDT----SISVFTDQPSIVIFTANFGDLGTLYHEKKQVH--HGGITFECQV 307
Query: 328 FPDSVNNPNFPSQVVNPGETYNHVMVYRF 356
P S P + GE Y +Y
Sbjct: 308 SPGSEQIPELGDISLKAGEKYQATTIYSL 336
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 108 bits (271), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 93/328 (28%), Positives = 157/328 (47%), Gaps = 32/328 (9%)
Query: 46 FTNYGATMLSAVIPDKNGKLADIVLGFDSVKDY-KTDNTYFGAIVGRVANRISRAQFTLN 104
F N GA+++ + NG+ +VLG+++ + Y D+ Y GA +GR ANRIS+ +F+L
Sbjct: 388 FANLGASIVDLKV---NGQ--SVVLGYENEEGYLNPDSAYIGATIGRYANRISKGKFSLC 442
Query: 105 GTRYQLINNDGDNMLHGGPRGF--SEVIWKVKSHEVNSHITFTYNSLEGEQG--FPGDLA 160
YQL N+G N H F + + + T Y ++ E+ FPGDL
Sbjct: 443 NKDYQLTVNNGVNANHSSIGSFHRKRFLGPIIQNPSKDVFTAEYMLIDNEKDTEFPGDLL 502
Query: 161 VSVTYMF-VGENNLVVKMKAKPLE-KATPVNLALHTYWNLGGHSSGDIFSHKLQLFGSHV 218
V++ Y V + +L + K K +ATP+NL H+Y+NL I ++ +
Sbjct: 503 VTIQYTVNVAQKSLEIVYKGKLTAGEATPINLTNHSYFNLNKPYGDTIEGTEIMVRSKKS 562
Query: 219 TPVNDRLIPTGKITPVTGTPYDFLQPREIGSKFKELPDGYDINYVLD-NPNPEHL----K 273
V+ +IPTG I ++ +P +G K + +D +V+D N P +
Sbjct: 563 VDVDKNMIPTGNIVDREIATFNSTKPTVLGPKNPQ----FDCCFVVDENAKPSQINTLNN 618
Query: 274 KVAVVSESV---SGRKMELWTNKPGVQFYTSNMLGKVMGKDGFVYSNYAGFCLETQGFPD 330
++ ++ ++ S +E+ + +P QFYT + L Y GF +E + D
Sbjct: 619 ELTLIVKAFHPDSNITLEVLSTEPTYQFYTGDFLSA-------GYEARQGFAIEPGRYID 671
Query: 331 SVNNPNFPSQV-VNPGETYNHVMVYRFT 357
++N N+ V + GETY +VYRF+
Sbjct: 672 AINQENWKDCVTLKNGETYGSKIVYRFS 699
>pdb|3IMH|A Chain A, Crystal Structure Of Galactose 1-Epimerase From
Lactobacillus Acidophilus Ncfm
pdb|3IMH|B Chain B, Crystal Structure Of Galactose 1-Epimerase From
Lactobacillus Acidophilus Ncfm
Length = 338
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/303 (27%), Positives = 135/303 (44%), Gaps = 32/303 (10%)
Query: 42 LSLKFTNYGATMLSAVIPDKNGKLADIVLGFDSVKDYKTDNTYFGAIVGRVANRISRAQF 101
+++K NYGAT+ ++ +N ++L +S +DY + + G VGR+A R+ Q+
Sbjct: 29 MAVKVLNYGATLEKVLLDGEN-----MILSLNSPEDYSKERNFLGGTVGRIAGRVRAGQW 83
Query: 102 TLNGTRYQLINNDGDNMLHGGPRGFSEVIWKVKSHEVNSH--ITFTYNSLEGEQGFPGDL 159
+QL NDGDN +HGG G +W + + H + T +G +PG+L
Sbjct: 84 KHGNEIHQLPLNDGDNHIHGGI-GTDMHVWDFRPSCDSEHARVDLTLFDPDGNNDYPGNL 142
Query: 160 AVSVTYMFVGENNLVVKMKAKPLEKATPVNLALHTYWNLGGHSSGDIFSHKLQLFGSHVT 219
+ Y ENNL ++A +K T N HTY+NLG + LQ+ +
Sbjct: 143 KLHARYELDNENNLHYLLEAVS-DKLTIFNPVNHTYFNLGERAE----DLNLQMNADYYL 197
Query: 220 PVNDRLIPTGKITPVTGTPYDFLQPREIGSKFK------ELPDGYDINYVLDNPNPEHLK 273
PV++ +P + V GT +DF + + IG +L +G D ++L+ NP L
Sbjct: 198 PVDEAGLPDRGMAEVAGTAFDFRKTKRIGDALNSDDSQIKLRNGLDHPFILNGNNPAALL 257
Query: 274 KVAVVSESVSGRKMELWTNKPGVQFYTSNMLGKVMGKDGFV--YSNYAGFCLETQGFPDS 331
S + ++ + TN P + Y N G V Y G E Q P
Sbjct: 258 -------SSNKHRLIVKTNAPALVLYAGNHFNHT----GIVNNIGQYDGITFEAQCPPAE 306
Query: 332 VNN 334
N+
Sbjct: 307 GND 309
>pdb|1YGA|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Yn9a
Protein, New York Structural Genomics Consortium
pdb|1YGA|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Yn9a
Protein, New York Structural Genomics Consortium
Length = 342
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 88/329 (26%), Positives = 149/329 (45%), Gaps = 39/329 (11%)
Query: 50 GATMLSAVIPDKNGKLADIVLGFDSVKDYKTDNTYFGAIVGRVANRISRAQFTLNGTRYQ 109
GAT++ + NG+ +V G+ +V+DY TD GA VGR ANRI++ F+L+ ++
Sbjct: 29 GATLVDLKV---NGQ--SVVQGYSNVQDYLTDGNMMGATVGRYANRIAKGVFSLDDGPHK 83
Query: 110 LINNDGDNMLHGGPRGFSEVIWKVKSHEVNSHITFTY-------NSLEGEQGFPGDLAVS 162
L N+ N H + +K E S + ++ FPGDL V+
Sbjct: 84 LTVNNCGNTNHSSISSLNLKQYKASPVENPSKGVYVVEFKLLDDHTQPNPNEFPGDLEVT 143
Query: 163 VTYMF-VGENNLVVKMKAKPLE-KATPVNLALHTYWNLGG-HSSGDIFSHKLQLFGSHVT 219
V Y V E L ++ +A+ + ATP+N+ H+Y+NL S I ++++ +
Sbjct: 144 VKYTLNVAEMTLDMEYQAQLVRGDATPINMTNHSYFNLNKVKSEKSIRGTEVKVCSNKSL 203
Query: 220 PVND-RLIPTGKITPVTGTPYDFLQPREIGSKFKELPDGYDINYVLD-NPNPEHLKKVAV 277
V + L+PTGKI +D +P + E +D +++D N + + V+V
Sbjct: 204 EVTEGALLPTGKIIERNIATFDSTKP----TVLHEDTPVFDCTFIIDANKDLKTTDSVSV 259
Query: 278 --------VSESVSGRKMELWTNKPGVQFYT-SNMLGKVMGKDGFVYSNYAGFCLETQGF 328
S K E+ T +P V YT N+ GK + + +GF ++ +
Sbjct: 260 NKLVPVFKAYHPESHIKFEVSTTEPTVHLYTGDNLCGKFVPR--------SGFAVQQGRY 311
Query: 329 PDSVNNPNFPSQV-VNPGETYNHVMVYRF 356
D++N + V + GE Y Y+F
Sbjct: 312 VDAINRDEWRGCVLLKRGEVYTSKTQYKF 340
>pdb|3MWX|A Chain A, Crystal Structure Of A Putative Galactose Mutarotase
(Bsu18360) From Bacillus Subtilis At 1.45 A Resolution
pdb|3MWX|B Chain B, Crystal Structure Of A Putative Galactose Mutarotase
(Bsu18360) From Bacillus Subtilis At 1.45 A Resolution
Length = 326
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 62/248 (25%), Positives = 99/248 (39%), Gaps = 28/248 (11%)
Query: 27 ESCEAVGVYKLKRGDLSLKFT---NYGATMLSAVIPDKNGKLADIVLGFDSVKDYKTDNT 83
E +G +K G+ L+ +G+ ++S V N +L + ++ + + T
Sbjct: 7 EKITYLGTPAIKAGNEHLEXIVVPEWGSNVISLVDKTTNVQL---LREPETAESFHDTPT 63
Query: 84 YFGAIVGRVANRISRAQFTLNGTRYQLINNDGD--NMLHG--GPRGFSEVIWKVKSHEVN 139
+G + NRIS F+ G Y N+ D N LHG ++ V K V
Sbjct: 64 LYGIPILFPPNRISDGTFSFRGRTYHFDINEKDKHNHLHGFLYHEKWNVVTTKQTDEGVI 123
Query: 140 SHITFTYNSLEG-EQGFPGDLAVSVTYMFVGENNL----VVKMKAKPLEKATPVNLALHT 194
+ L ++ FP V TY + EN L V K K +A P + HT
Sbjct: 124 VETEIDLSELPHVQKQFPHHAVVRXTYT-IKENTLFKHATVXNKGK---EAFPWGIGYHT 179
Query: 195 YWNLGGHSSGDIFSHKLQLFGSHVTPVNDRLIPTGKITPVTGTPYDFLQPREIGSKFKEL 254
+ SS +FS L +++RL+PTGK+ V PY + K+L
Sbjct: 180 TFIFPAESS--LFS----LTADQQWELDERLLPTGKLXDV---PYKEALHEGXDLRHKQL 230
Query: 255 PDGYDINY 262
D + +Y
Sbjct: 231 DDVFLSSY 238
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 15/117 (12%)
Query: 113 NDGDNMLHGGPRGFSEVIWKVKSHEVNSHITFTYNSLEGEQGFPGDLAVSVTYMFVGENN 172
N+ +L G R + +IWK+ E N + + +L G F DLA+S F ++
Sbjct: 36 NEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSS 95
Query: 173 LVVKMKAKPLEKATPVNLALHTYWNLGGHSSGDIFSHKLQLFGSHVTPVNDRLIPTG 229
++ L T TY GH S +++ +P N +++ G
Sbjct: 96 WDKTLRLWDLRTGT-------TYKRFVGHQS--------EVYSVAFSPDNRQILSAG 137
>pdb|3KFL|A Chain A, Leishmania Major Methionyl-Trna Synthetase In Complex With
Methionyladenylate And Pyrophosphate
Length = 564
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 10/84 (11%)
Query: 237 TPYDFLQPREIGSKFKEL--PDGYDINYVLDNPNPEHLKKVAVVSESVSGR------KME 288
+P DF + S+FK+ YD+NY + NP H K V + + ++ + K E
Sbjct: 89 SPMDFTT--SVSSEFKQCFQEMNYDMNYFIRTTNPTHEKLVQDIWKKLAAKGDIYLGKYE 146
Query: 289 LWTNKPGVQFYTSNMLGKVMGKDG 312
W + F T+ + + +DG
Sbjct: 147 GWYSVSDESFLTAQNVADGVDRDG 170
>pdb|4GF2|A Chain A, Crystal Structure Of Plasmodium Falciparum Erythrocyte
Binding Antigen 140 (Pfeba-140BAEBL)
Length = 615
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 42 LSLKFTNYGATMLSAVIPDKNGKLADIVLGFDSVKDY 78
L K+ L ++I + LADI+ G D +KDY
Sbjct: 379 LKYKYKEKDENALCSIIQNSYADLADIIKGSDIIKDY 415
>pdb|3NX1|A Chain A, Crystal Structure Of Enterobacter Sp. Px6-4 Ferulic Acid
Decarboxylase
pdb|3NX1|B Chain B, Crystal Structure Of Enterobacter Sp. Px6-4 Ferulic Acid
Decarboxylase
pdb|3NX2|A Chain A, Enterobacter Sp. Px6-4 Ferulic Acid Decarboxylase In
Complex With Substrate Analogues
pdb|3NX2|B Chain B, Enterobacter Sp. Px6-4 Ferulic Acid Decarboxylase In
Complex With Substrate Analogues
Length = 168
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 58/151 (38%), Gaps = 28/151 (18%)
Query: 62 NGKLADIVLGFDSVKDYKTDNTYFG--------AIVGRVANRISRAQFTL-NGTRYQLIN 112
NG +I + D+ DY+ + G A + RV I + +T GT LI
Sbjct: 23 NGWNYEIYVKNDNTIDYRIHSGLVGNRWVKDQEAYIVRVGESIYKISWTEPTGTDVSLIV 82
Query: 113 NDGDNMLHGG---PRGFSEVIWKVKSHE-----VNSHITFTYNSLEGEQGFPGDLAVS-V 163
N GD++ HG PR W + + E N HI + E +P ++
Sbjct: 83 NLGDSLFHGTIFFPR------WVMNNPEPTVCFQNDHIPLMNSYREAGPAYPTEVIDEFA 136
Query: 164 TYMFV----GENNLVVKMKAKPLEKATPVNL 190
T FV N V+ A L K P NL
Sbjct: 137 TITFVRDCGANNESVIACAASELPKNFPDNL 167
>pdb|3OS7|A Chain A, Crystal Structure Of A Galactose Mutarotase-Like Protein
(Ca_c0697) From Clostridium Acetobutylicum At 1.80 A
Resolution
pdb|3OS7|B Chain B, Crystal Structure Of A Galactose Mutarotase-Like Protein
(Ca_c0697) From Clostridium Acetobutylicum At 1.80 A
Resolution
pdb|3OS7|C Chain C, Crystal Structure Of A Galactose Mutarotase-Like Protein
(Ca_c0697) From Clostridium Acetobutylicum At 1.80 A
Resolution
pdb|3OS7|D Chain D, Crystal Structure Of A Galactose Mutarotase-Like Protein
(Ca_c0697) From Clostridium Acetobutylicum At 1.80 A
Resolution
Length = 341
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 41/211 (19%), Positives = 85/211 (40%), Gaps = 25/211 (11%)
Query: 42 LSLKFTNYGATMLSAVIPDKNGKLADIVLGFDSVKDYKTDNTYFGAIVGRVANRISRAQF 101
+ LK TN G T+L P K+ K +D+K +G V NRI F
Sbjct: 41 VELKDTNKGVTILRT--PKKDLKF----------EDFKNRPQVYGLPVLFPPNRIDDGTF 88
Query: 102 TLNGTRYQLINNDG--DNMLHGGPRGFSEVIWKVKSHEVNSHITFTYN---SLEGEQGFP 156
L Y+ N+ +N +HG + + K K + + + ++ E + F
Sbjct: 89 KLGDKTYKFPINEAKNNNYIHGFIKNSKWTVHKKKIDQDKALVEVVFDFTKENEAYKYFS 148
Query: 157 GDLAVSVTYMF----VGENNLVVKMKAKPLEKATPVNLALHTYWNLGGHSSGDIFSHKLQ 212
+ ++Y + + VV + + + P+++ H+ +N+ + + +++
Sbjct: 149 HEFQFKLSYELSSKGLKQTTSVVNLSS----EEXPLSVGYHSAFNVPFIEGSEDSNCRVK 204
Query: 213 LFGSHVTPVNDRLIPTGKITPVTGTPYDFLQ 243
+ + R +PTG+ TG ++L+
Sbjct: 205 ISIDKFWKQDSRNLPTGESFAPTGEQKEYLE 235
>pdb|3QNA|A Chain A, Crystal Structure Of A 6-Pyruvoyltetrahydropterin Synthase
Homologue From Esherichia Coli Complexed Sepiapterin
pdb|3QNA|B Chain B, Crystal Structure Of A 6-Pyruvoyltetrahydropterin Synthase
Homologue From Esherichia Coli Complexed Sepiapterin
pdb|3QNA|C Chain C, Crystal Structure Of A 6-Pyruvoyltetrahydropterin Synthase
Homologue From Esherichia Coli Complexed Sepiapterin
pdb|3QNA|D Chain D, Crystal Structure Of A 6-Pyruvoyltetrahydropterin Synthase
Homologue From Esherichia Coli Complexed Sepiapterin
pdb|3QNA|E Chain E, Crystal Structure Of A 6-Pyruvoyltetrahydropterin Synthase
Homologue From Esherichia Coli Complexed Sepiapterin
pdb|3QNA|F Chain F, Crystal Structure Of A 6-Pyruvoyltetrahydropterin Synthase
Homologue From Esherichia Coli Complexed Sepiapterin
Length = 141
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 18/80 (22%)
Query: 200 GHSSGDIFSHKLQLFGSHVTPVNDRLIPTGKITPVTGTPYDFLQPREIGSKFKELPDGYD 259
GH +G + H + RL TG++ P TG DF E+ + FK + D
Sbjct: 44 GHKAGRLHGHSFMV----------RLEITGEVDPHTGWIIDF---AELKAAFKPTYERLD 90
Query: 260 INYV-----LDNPNPEHLKK 274
+Y+ L+NP E L K
Sbjct: 91 HHYLNDIPGLENPTSEVLAK 110
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,056,938
Number of Sequences: 62578
Number of extensions: 552836
Number of successful extensions: 1148
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1098
Number of HSP's gapped (non-prelim): 23
length of query: 359
length of database: 14,973,337
effective HSP length: 100
effective length of query: 259
effective length of database: 8,715,537
effective search space: 2257324083
effective search space used: 2257324083
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)