BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043311
         (257 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|225450399|ref|XP_002278276.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38150-like [Vitis vinifera]
          Length = 307

 Score =  324 bits (830), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 166/250 (66%), Positives = 200/250 (80%), Gaps = 19/250 (7%)

Query: 21  RITNTRVNATLQRSL------------SSSSDQPTKKYVNTKSKLPPPYDPF-KKVVDEE 67
           R+ NT VN+T + S             S +  + TK  ++ KSKLPPPYDPF KK+  EE
Sbjct: 64  RLFNTGVNSTDRSSTKINFSPSDSDSDSETMIKKTKHEID-KSKLPPPYDPFSKKLAIEE 122

Query: 68  PTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P DP++LQ+IFHKMRTEGL  NAVKMFDALSKDGLTHEA++LFAQIKD GHMPDVVAHTA
Sbjct: 123 PKDPKDLQDIFHKMRTEGLVPNAVKMFDALSKDGLTHEAMELFAQIKDHGHMPDVVAHTA 182

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           VIEAYA+AGQ KEA++V+MRML SGV PNAYTY+VLIKGLA    G+AK LG+A+KY++E
Sbjct: 183 VIEAYANAGQSKEAVKVYMRMLTSGVMPNAYTYSVLIKGLA----GDAK-LGEAKKYVLE 237

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGF 247
           M+GKGMRPNAGTYTA+FE F + QKV+E R  L+QMKAKGF PDEKAV+E L ++RGQ F
Sbjct: 238 MMGKGMRPNAGTYTALFEGFAKEQKVEEGREFLEQMKAKGFTPDEKAVREILKNRRGQVF 297

Query: 248 RGVINILFGK 257
           R +++ILFGK
Sbjct: 298 RSIMDILFGK 307


>gi|147828501|emb|CAN77580.1| hypothetical protein VITISV_015346 [Vitis vinifera]
          Length = 347

 Score =  322 bits (826), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 166/250 (66%), Positives = 199/250 (79%), Gaps = 19/250 (7%)

Query: 21  RITNTRVNATLQRS------------LSSSSDQPTKKYVNTKSKLPPPYDPF-KKVVDEE 67
           R+ NT VN+T + S             S +  + TK  ++ KSKLPPPYDPF KK   EE
Sbjct: 104 RLFNTGVNSTDRSSTKINFSPSDSDSDSETMIKKTKHEID-KSKLPPPYDPFSKKPAIEE 162

Query: 68  PTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P DP++LQ+IFHKMRTEGL  NAVKMFDALSKDGLTHEA++LFAQIKD GHMPDVVAHTA
Sbjct: 163 PKDPKDLQDIFHKMRTEGLVPNAVKMFDALSKDGLTHEAMELFAQIKDHGHMPDVVAHTA 222

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           VIEAYA+AGQ KEA++V+MRML SGV PNAYTY+VLIKGLA    G+AK LG+A+KY++E
Sbjct: 223 VIEAYANAGQSKEAVKVYMRMLTSGVMPNAYTYSVLIKGLA----GDAK-LGEAKKYVLE 277

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGF 247
           M+GKGMRPNAGTYTA+FE F + QKV+E R  L+QMKAKGF PDEKAV+E L ++RGQ F
Sbjct: 278 MMGKGMRPNAGTYTALFEGFAKEQKVEEGREFLEQMKAKGFTPDEKAVREILKNRRGQVF 337

Query: 248 RGVINILFGK 257
           R +++ILFGK
Sbjct: 338 RSIMDILFGK 347


>gi|255578920|ref|XP_002530313.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223530169|gb|EEF32080.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 328

 Score =  322 bits (825), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 173/257 (67%), Positives = 200/257 (77%), Gaps = 11/257 (4%)

Query: 7   LRWLLHSPSPKRSLR--ITNTRVN--ATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPF-K 61
           LR     P+ ++     ITNT+VN   +   S S    + +K     K+KLPPPYDPF K
Sbjct: 77  LRSFCSKPTSEKETTKTITNTKVNFSLSDSDSDSDLDSEDSKNKEIDKTKLPPPYDPFNK 136

Query: 62  KVVDEEPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPD 121
           K V EEP DP NLQ IFHKMR+EGL N+AVKMFDALSKDGLTHEAL+LF+QIK+KGHMPD
Sbjct: 137 KPVIEEPDDPNNLQLIFHKMRSEGLLNSAVKMFDALSKDGLTHEALELFSQIKNKGHMPD 196

Query: 122 VVAHTAVIEAYASA-GQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGD 180
           VVA+TAVIEAYA+A GQ KEAL+ FMRMLA+GVAPNAYTY VLIKGL  A DG    L D
Sbjct: 197 VVAYTAVIEAYANAGGQSKEALKAFMRMLAAGVAPNAYTYTVLIKGL--AGDGK---LAD 251

Query: 181 AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
           A KY++EM+GKGMRPNAGTY+ VFEA+ +AQKVDEA+ LLQQMK KGFVP+EKAV+E L 
Sbjct: 252 ANKYVLEMMGKGMRPNAGTYSTVFEAYAKAQKVDEAKLLLQQMKGKGFVPEEKAVREVLN 311

Query: 241 DKRGQGFRGVINILFGK 257
           +KRGQ FR VINILF K
Sbjct: 312 NKRGQVFRTVINILFDK 328


>gi|238481201|ref|NP_001154694.1| nucleobase:cation symporter-1, NCS1 family [Arabidopsis thaliana]
 gi|332003244|gb|AED90627.1| nucleobase:cation symporter-1, NCS1 family [Arabidopsis thaliana]
          Length = 363

 Score =  312 bits (800), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 169/246 (68%), Positives = 188/246 (76%), Gaps = 10/246 (4%)

Query: 18  RSLRITNTRVNATLQRSLSSS-SDQPTKKYVNTKSK----LPPPYDPF-KKVVDEEPTDP 71
           R       RVN  +  SLS   SD+ T+  V   SK     PPPYDPF KK   EEP DP
Sbjct: 122 RQFSSETKRVNTKVNFSLSDDDSDEETETQVTEDSKKQEPPPPPYDPFSKKPAIEEPEDP 181

Query: 72  RNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +NLQEIFHKMRTEG TN AVKMFDALSKDG THEAL+LF+QIKDK  MPDVVAHTA++EA
Sbjct: 182 KNLQEIFHKMRTEGFTNEAVKMFDALSKDGRTHEALELFSQIKDKNRMPDVVAHTAIVEA 241

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           YA+AGQ KE L+VFMRMLASGV+PNAYTY+VLIKGL  AADG  K   DA+KYL+EM+G 
Sbjct: 242 YANAGQAKETLKVFMRMLASGVSPNAYTYSVLIKGL--AADG--KTHKDAKKYLLEMMGN 297

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVI 251
           GM PNA TYTAVFEAFVR  K + AR LLQ+MK KGFVPDEKAV+EAL  KRGQ FR VI
Sbjct: 298 GMSPNAATYTAVFEAFVREGKEESARELLQEMKGKGFVPDEKAVREALEYKRGQVFRTVI 357

Query: 252 NILFGK 257
           N+LF K
Sbjct: 358 NLLFDK 363


>gi|7378643|emb|CAB83319.1| putative protein [Arabidopsis thaliana]
          Length = 482

 Score =  312 bits (799), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 169/246 (68%), Positives = 188/246 (76%), Gaps = 10/246 (4%)

Query: 18  RSLRITNTRVNATLQRSLSSS-SDQPTKKYVNTKSK----LPPPYDPF-KKVVDEEPTDP 71
           R       RVN  +  SLS   SD+ T+  V   SK     PPPYDPF KK   EEP DP
Sbjct: 103 RQFSSETKRVNTKVNFSLSDDDSDEETETQVTEDSKKQEPPPPPYDPFSKKPAIEEPEDP 162

Query: 72  RNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +NLQEIFHKMRTEG TN AVKMFDALSKDG THEAL+LF+QIKDK  MPDVVAHTA++EA
Sbjct: 163 KNLQEIFHKMRTEGFTNEAVKMFDALSKDGRTHEALELFSQIKDKNRMPDVVAHTAIVEA 222

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           YA+AGQ KE L+VFMRMLASGV+PNAYTY+VLIKGL  AADG  K   DA+KYL+EM+G 
Sbjct: 223 YANAGQAKETLKVFMRMLASGVSPNAYTYSVLIKGL--AADG--KTHKDAKKYLLEMMGN 278

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVI 251
           GM PNA TYTAVFEAFVR  K + AR LLQ+MK KGFVPDEKAV+EAL  KRGQ FR VI
Sbjct: 279 GMSPNAATYTAVFEAFVREGKEESARELLQEMKGKGFVPDEKAVREALEYKRGQVFRTVI 338

Query: 252 NILFGK 257
           N+LF K
Sbjct: 339 NLLFDK 344


>gi|297810441|ref|XP_002873104.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297318941|gb|EFH49363.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 478

 Score =  310 bits (794), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 155/235 (65%), Positives = 180/235 (76%), Gaps = 6/235 (2%)

Query: 24  NTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPF-KKVVDEEPTDPRNLQEIFHKMR 82
           NT+VN +L     S  + P  +       LPPPYDPF KK+  E P DP+NLQEIFHKM+
Sbjct: 111 NTKVNFSLSDD-DSDEETPVTEDSGKPEFLPPPYDPFSKKLAIEGPEDPKNLQEIFHKMK 169

Query: 83  TEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEAL 142
           TEG  N AVKMFDALSKDG THEAL+LF+QIKDK  MPDVVAHTA++EAYA+AGQ KEAL
Sbjct: 170 TEGFMNEAVKMFDALSKDGRTHEALELFSQIKDKNQMPDVVAHTAIVEAYANAGQAKEAL 229

Query: 143 RVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTA 202
           +VFMRMLA GV+PNAYTY VLIKGLAA    + + L DA+KYL+EM+G GM PN  TYTA
Sbjct: 230 KVFMRMLACGVSPNAYTYTVLIKGLAA----DVRTLKDAKKYLLEMMGNGMSPNTATYTA 285

Query: 203 VFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257
           VFEAFV+ +K + AR LLQ+MK  GFVPDEKAV+EAL  KRGQ FR V N+LF K
Sbjct: 286 VFEAFVKDEKEESARELLQEMKGNGFVPDEKAVREALQSKRGQVFRTVFNLLFDK 340


>gi|356575267|ref|XP_003555763.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38150-like [Glycine max]
          Length = 289

 Score =  308 bits (789), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 154/243 (63%), Positives = 189/243 (77%), Gaps = 5/243 (2%)

Query: 18  RSLRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKK--VVDEEPTDPRNLQ 75
           R    T   V+  +  SLS + D+  K+   +K  +PPPYDPF K   V++  +DP++LQ
Sbjct: 49  RHFSSTKKPVDTKVNFSLSDTDDEDNKENGTSKKAVPPPYDPFSKKPAVEDPSSDPKDLQ 108

Query: 76  EIFHKMRT-EGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           +IFH MRT +GL ++AVKMFDALSK+GLTHEAL+LFAQIKDKGHMPDVVAHTAV+EAYA+
Sbjct: 109 QIFHNMRTGDGLFSHAVKMFDALSKEGLTHEALELFAQIKDKGHMPDVVAHTAVLEAYAN 168

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
           A Q KEAL+V+MRMLASGV+PNAYTYAVLIKGLAAAAD   K + +A KY++EM+ KGM+
Sbjct: 169 AAQPKEALKVYMRMLASGVSPNAYTYAVLIKGLAAAAD--VKFVKEASKYVLEMMDKGMK 226

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINIL 254
           PN  TY  VFE  VR +K+DEA  LL+QMK KGFVPDEKAV+E L  KRG  FR VI++L
Sbjct: 227 PNVQTYACVFEGLVREEKLDEAARLLEQMKGKGFVPDEKAVREVLASKRGPVFRNVIDVL 286

Query: 255 FGK 257
           FGK
Sbjct: 287 FGK 289


>gi|357442017|ref|XP_003591286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480334|gb|AES61537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 276

 Score =  296 bits (759), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 154/240 (64%), Positives = 184/240 (76%), Gaps = 7/240 (2%)

Query: 21  RITNTRVNATLQRSLSSSSDQPTK-KYVNTKSKLPPPYDPF-KKVVDEEPTDPRNLQEIF 78
           +  +T++N +L  S S   + PT  K       LPPPYDPF KK   EEP DP++LQ+IF
Sbjct: 41  KTIDTKINFSLSDSDSDDENTPTTTKPTEISKNLPPPYDPFSKKPAIEEPEDPKDLQQIF 100

Query: 79  HKMRT-EGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ 137
           HKMRT +GL N+AVKMFDALS+ GLTHEAL+LF QIKDK  MPDVVA+TA+IEAYA+AGQ
Sbjct: 101 HKMRTGDGLFNHAVKMFDALSQQGLTHEALELFGQIKDKNQMPDVVANTAIIEAYANAGQ 160

Query: 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA 197
            KEAL+ +MRMLASGV PNAYTY V+IKGLA+    +AK L DA+KYL+EM+ KGMRPNA
Sbjct: 161 PKEALKAYMRMLASGVCPNAYTYTVIIKGLAS----DAKFLKDAKKYLLEMMEKGMRPNA 216

Query: 198 GTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257
            TY AVFE  V  +K+DEA  LL++MK KGFVPDE AV+E L +KRG  FR VINILFGK
Sbjct: 217 ETYGAVFEGLVTEEKIDEAEKLLEEMKGKGFVPDENAVREVLSNKRGPVFRTVINILFGK 276


>gi|115467750|ref|NP_001057474.1| Os06g0308200 [Oryza sativa Japonica Group]
 gi|54290618|dbj|BAD62189.1| unknown protein [Oryza sativa Japonica Group]
 gi|54291488|dbj|BAD62309.1| unknown protein [Oryza sativa Japonica Group]
 gi|113595514|dbj|BAF19388.1| Os06g0308200 [Oryza sativa Japonica Group]
 gi|215765168|dbj|BAG86865.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 332

 Score =  266 bits (681), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 155/284 (54%), Positives = 187/284 (65%), Gaps = 42/284 (14%)

Query: 1   MAATAILRWLLHSPSPKRSLRITNTRVNATLQRSLSS-SSDQPTKKYVNTKS-------- 51
           MAA A  R LL    P  S+   NTR      R LSS SS  PT +  NT S        
Sbjct: 64  MAAAAATRPLLR---PTCSVARFNTR------RLLSSTSSPPPTNRSSNTNSPVAFDWSD 114

Query: 52  ---------------KLPPPYDPF-KKVVDEEPTDPRNLQEIFHKMRTEGLTNNAVKMFD 95
                           LP PYDPF KK    EP+DP NLQE+FH+MRTEGLT+ A+KMFD
Sbjct: 115 DDDNPSPPPMEAKSPNLPLPYDPFSKKPAVMEPSDPTNLQEVFHRMRTEGLTDYAIKMFD 174

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG--QGKEALRVFMRMLASGV 153
            LSKDGLTHEAL+LFA IKDKG MPDVVAHTAV+EAYA+AG    ++ +R + RMLASGV
Sbjct: 175 GLSKDGLTHEALELFAIIKDKGAMPDVVAHTAVLEAYANAGPAHWRDVVRTYDRMLASGV 234

Query: 154 APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV 213
            PNAYT AVL+KGLAA     +    +A KY++EM+ +GMRPNA TY AVFEA+VR +KV
Sbjct: 235 TPNAYTLAVLVKGLAA-----SDRFMEAGKYIVEMLDRGMRPNAATYLAVFEAYVRMEKV 289

Query: 214 DEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257
           +E R LL+ MK+KGF P E+AV+   + KRG  FRG++N+LF K
Sbjct: 290 EEGRVLLETMKSKGFTPSEEAVRSGTV-KRGHVFRGIMNMLFDK 332


>gi|242077000|ref|XP_002448436.1| hypothetical protein SORBIDRAFT_06g027100 [Sorghum bicolor]
 gi|241939619|gb|EES12764.1| hypothetical protein SORBIDRAFT_06g027100 [Sorghum bicolor]
          Length = 271

 Score =  264 bits (674), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 142/251 (56%), Positives = 177/251 (70%), Gaps = 12/251 (4%)

Query: 11  LHSPSPKRSLRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPY-DPF-KKVVDEEP 68
           + S  P RS   TN+ V+       + +S  P       K +LPPPY DPF KK    EP
Sbjct: 29  ITSAPPHRSPN-TNSPVSFDWSDDDADTSSHPPPSTAK-KDELPPPYYDPFSKKPAVAEP 86

Query: 69  TDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           +DP NLQEIFH+MR EGLT+ A+KMFD LSKDGLTHEAL LFA IKDKG MPDVVAHTAV
Sbjct: 87  SDPTNLQEIFHRMRKEGLTDYAIKMFDGLSKDGLTHEALALFAVIKDKGSMPDVVAHTAV 146

Query: 129 IEAYASAG--QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
           +EAYA+AG    ++ +R + RMLASGV PNAYT AVL++GLAA     +    +A KYL+
Sbjct: 147 LEAYANAGPAHWRDTVRTYDRMLASGVVPNAYTLAVLVRGLAA-----SNRCAEAGKYLV 201

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
           EM+ +GMRPN  TY A FEA++R +KV+E + LL+ MK KGFVPDE+AV+   + KRGQ 
Sbjct: 202 EMLDRGMRPNVATYLAAFEAYLRMEKVEEGKALLETMKGKGFVPDEEAVRGGTV-KRGQV 260

Query: 247 FRGVINILFGK 257
           F G++N+LFGK
Sbjct: 261 FDGIMNLLFGK 271


>gi|226504304|ref|NP_001140892.1| hypothetical protein [Zea mays]
 gi|194701616|gb|ACF84892.1| unknown [Zea mays]
 gi|413919370|gb|AFW59302.1| hypothetical protein ZEAMMB73_030083 [Zea mays]
          Length = 270

 Score =  259 bits (662), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 150/286 (52%), Positives = 186/286 (65%), Gaps = 45/286 (15%)

Query: 1   MAATAILRWLLHSPSPKRSLRITNTRVNATLQRSLSSSSDQPTKKYVNT----------- 49
           MAA A+ R LL   S   S  ++NT       R LSS++  P  +  NT           
Sbjct: 1   MAAAAVRR-LLRGAS---STSVSNT------SRLLSSTTSPPPHRSPNTNSPVAFDWSDD 50

Query: 50  --------------KSKLPPPY-DPF-KKVVDEEPTDPRNLQEIFHKMRTEGLTNNAVKM 93
                         K +LPPPY DPF KK    EP+DP NLQE+FHKMR EGLT+ A+KM
Sbjct: 51  DADGSSHLPPSTEKKDELPPPYYDPFNKKPAIAEPSDPTNLQEVFHKMRKEGLTDYAIKM 110

Query: 94  FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG--QGKEALRVFMRMLAS 151
           FD LSKDGLTHEAL LFA IKD+G MPDVVAHTAV+EAYASAG    ++A+R + RMLAS
Sbjct: 111 FDGLSKDGLTHEALALFAVIKDRGSMPDVVAHTAVLEAYASAGPAHWRDAVRTYDRMLAS 170

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           GV PNAYT AVL++GLAA     +    +A KYL+EM+ +GMRPN  TY A FEA++R +
Sbjct: 171 GVMPNAYTLAVLVRGLAA-----SDRCAEAGKYLVEMLDRGMRPNVATYLAAFEAYLRME 225

Query: 212 KVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257
           KV+E + LL+ MK KGF PDE+AV+   + KRGQ F G++ +LFGK
Sbjct: 226 KVEEGKALLETMKGKGFRPDEEAVRGGTV-KRGQVFDGLMKLLFGK 270


>gi|195647870|gb|ACG43403.1| hypothetical protein [Zea mays]
          Length = 270

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 132/212 (62%), Positives = 162/212 (76%), Gaps = 10/212 (4%)

Query: 50  KSKLPPPY-DPF-KKVVDEEPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEAL 107
           K +LPPPY DPF KK    EP+DP NLQE+FHKMR EGLT+ A+KMFD LSKDGLTHEAL
Sbjct: 65  KDELPPPYYDPFSKKPAIAEPSDPTNLQEVFHKMRKEGLTDYAIKMFDGLSKDGLTHEAL 124

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAG--QGKEALRVFMRMLASGVAPNAYTYAVLIK 165
            LFA IKD+G MPDVVAHTAV+EAYASAG    ++A+R + RMLASGV PNAYT AVL++
Sbjct: 125 ALFAVIKDRGSMPDVVAHTAVLEAYASAGPAHWRDAVRTYDRMLASGVMPNAYTLAVLVR 184

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           GLAA     +    +A KYL+EM+ +GMRPN  TY A FEA++R +KV+E + LL+ MK 
Sbjct: 185 GLAA-----SDRCAEAGKYLVEMLDRGMRPNVATYLAAFEAYLRMEKVEEGKALLETMKG 239

Query: 226 KGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257
           KGF PDE+AV+   + KRGQ F G++ +LFGK
Sbjct: 240 KGFRPDEEAVRGGTV-KRGQVFDGLMKLLFGK 270


>gi|357164163|ref|XP_003579969.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38150-like [Brachypodium distachyon]
          Length = 269

 Score =  258 bits (659), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 140/263 (53%), Positives = 175/263 (66%), Gaps = 34/263 (12%)

Query: 23  TNTRVNATLQRSLSSSSDQPTKKYVNTKSKLP-------------------------PPY 57
           T++   ++ +R LSS+  +P  +  NT S +                          PPY
Sbjct: 13  TSSTALSSARRFLSSTDSRPPNRCSNTNSPVSFDWSDDEGNPSAPPPESPAKNHVVTPPY 72

Query: 58  DPF-KKVVDEEPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDK 116
           DPF KK    +P DP NLQEIFHKMRTEGLT+ A+KMFD LSKDGLTHEAL LFA IKD 
Sbjct: 73  DPFSKKPAVADPADPTNLQEIFHKMRTEGLTDYAIKMFDGLSKDGLTHEALALFAVIKDN 132

Query: 117 GHMPDVVAHTAVIEAYASAG--QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174
           G MPDVVAHTAV+EAYA+AG    ++A+R + RML+SGVAPNAYT+AVL+KGLAA     
Sbjct: 133 GAMPDVVAHTAVLEAYANAGPAHWRDAVRTYNRMLSSGVAPNAYTFAVLVKGLAA----- 187

Query: 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
           +    +A KYL+EM+ +GMRPNA T  A FEA VR +KV+E + LL+ MK KGF  DE+A
Sbjct: 188 SDRCAEAGKYLVEMLDRGMRPNAATCLAAFEAHVRMEKVEEGKALLETMKKKGFTLDEEA 247

Query: 235 VKEALIDKRGQGFRGVINILFGK 257
           V+   + KRG  FRGV+N+LF K
Sbjct: 248 VRGGTV-KRGHVFRGVMNLLFSK 269


>gi|125555069|gb|EAZ00675.1| hypothetical protein OsI_22695 [Oryza sativa Indica Group]
          Length = 438

 Score =  247 bits (630), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 123/187 (65%), Positives = 149/187 (79%), Gaps = 8/187 (4%)

Query: 53  LPPPYDPF-KKVVDEEPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFA 111
           LPPPYDPF KK    EP+DP NLQE+FH+MRTEGLT+ A+KMFD LSKDGLTHEAL+LFA
Sbjct: 132 LPPPYDPFSKKPAVMEPSDPTNLQEVFHRMRTEGLTDYAIKMFDGLSKDGLTHEALELFA 191

Query: 112 QIKDKGHMPDVVAHTAVIEAYASAG--QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169
            IKDKG MPDVVAHTAV+EAYA+AG    ++ +R + RMLASGV PNAYT AVL+KGLAA
Sbjct: 192 IIKDKGAMPDVVAHTAVLEAYANAGPAHWRDVVRTYDRMLASGVTPNAYTLAVLVKGLAA 251

Query: 170 AADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFV 229
           +         +A KY++EM+ +GMRPNA TY AVFEA+VR +KV+E R LL+ MK+KGF 
Sbjct: 252 SDR-----FMEAGKYIVEMLDRGMRPNAATYLAVFEAYVRMEKVEEGRVLLETMKSKGFT 306

Query: 230 PDEKAVK 236
           P E+AV+
Sbjct: 307 PSEEAVR 313


>gi|125596987|gb|EAZ36767.1| hypothetical protein OsJ_21103 [Oryza sativa Japonica Group]
          Length = 374

 Score =  246 bits (629), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 145/263 (55%), Positives = 173/263 (65%), Gaps = 41/263 (15%)

Query: 1   MAATAILRWLLHSPSPKRSLRITNTRVNATLQRSLSS-SSDQPTKKYVNTKS-------- 51
           MAA A  R LL    P  S+   NTR      R LSS SS  PT +  NT S        
Sbjct: 1   MAAAAATRPLLR---PTCSVARFNTR------RLLSSTSSPPPTNRSSNTNSPVAFDWSD 51

Query: 52  ---------------KLPPPYDPF-KKVVDEEPTDPRNLQEIFHKMRTEGLTNNAVKMFD 95
                           LP PYDPF KK    EP+DP NLQE+FH+MRTEGLT+ A+KMFD
Sbjct: 52  DDDNPSPPPMEAKSPNLPLPYDPFSKKPAVMEPSDPTNLQEVFHRMRTEGLTDYAIKMFD 111

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG--QGKEALRVFMRMLASGV 153
            LSKDGLTHEAL+LFA IKDKG MPDVVAHTAV+EAYA+AG    ++ +R + RMLASGV
Sbjct: 112 GLSKDGLTHEALELFAIIKDKGAMPDVVAHTAVLEAYANAGPAHWRDVVRTYDRMLASGV 171

Query: 154 APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV 213
            PNAYT AVL+KGLAA+         +A KY++EM+ +GMRPNA TY AVFEA+VR +KV
Sbjct: 172 TPNAYTLAVLVKGLAASDR-----FMEAGKYIVEMLDRGMRPNAATYLAVFEAYVRMEKV 226

Query: 214 DEARGLLQQMKAKGFVPDEKAVK 236
           +E R LL+ MK+KGF P E+AV+
Sbjct: 227 EEGRVLLETMKSKGFTPSEEAVR 249


>gi|326487300|dbj|BAJ89634.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 285

 Score =  240 bits (613), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 135/269 (50%), Positives = 172/269 (63%), Gaps = 34/269 (12%)

Query: 17  KRSLRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKL-------------PPPYDPF--- 60
           +R LR T++   ++  R LSS++  P  +  NT S +             PPP  P    
Sbjct: 21  RRLLRPTSSAALSSAGRLLSSTASPPPNRSPNTNSPVSFDWSDDDESPAEPPPTSPAKNP 80

Query: 61  ----------KKVVDEEPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLF 110
                     K     +P DP NLQEIFH+MRT GLT+ A+KMFD LSKDGLTHEAL LF
Sbjct: 81  APPPPYEPFSKNPAAADPVDPTNLQEIFHRMRTGGLTDYAIKMFDGLSKDGLTHEALALF 140

Query: 111 AQIKDKGHMPDVVAHTAVIEAYASAG--QGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
           + I+DKG MPDVVAHTAV+EAYA+AG  + ++A+R + RML+ GVAPNAYT AVL+KGLA
Sbjct: 141 SVIRDKGAMPDVVAHTAVLEAYAAAGPARWRDAVRTYNRMLSGGVAPNAYTMAVLVKGLA 200

Query: 169 AAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
           A          +A+KYL+EM+ +GMRPN  T  A FEA VR  KV+E + LL+ MK KGF
Sbjct: 201 A-----GDRCAEARKYLLEMLDRGMRPNVETCLAAFEAHVRMDKVEEGKALLEMMKKKGF 255

Query: 229 VPDEKAVKEALIDKRGQGFRGVINILFGK 257
             DE+AV+   + KRG  FR V+N+LFGK
Sbjct: 256 TLDEEAVRGGTV-KRGHVFRAVMNMLFGK 283


>gi|116793480|gb|ABK26762.1| unknown [Picea sitchensis]
          Length = 298

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 81/193 (41%), Positives = 125/193 (64%), Gaps = 6/193 (3%)

Query: 65  DEEPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVA 124
           D +   P +  +IF KM+  GL  NAV M D LSKDGL  EA++LF ++++KG++P+V+ 
Sbjct: 105 DGDSNSPEDADQIFQKMKETGLVPNAVAMLDGLSKDGLVQEAMKLFGEMREKGNIPEVIV 164

Query: 125 HTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKY 184
           +TAV+E +  A +  +A R+F +M  +GV PNA++Y VLI+GL        K L +A  Y
Sbjct: 165 YTAVVEGFCRAKKLDDAKRIFKKMKDNGVVPNAFSYCVLIQGLC-----KDKKLEEAVDY 219

Query: 185 LMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRG 244
            +EM+ +G RPN  T+ ++ + F +  + DEA+ ++ Q K KGF+ DEKAV+E + DK+G
Sbjct: 220 SLEMLDQGWRPNVATFVSIIDGFCKELRSDEAKAVINQFKEKGFIVDEKAVREYM-DKKG 278

Query: 245 QGFRGVINILFGK 257
             F  V  ++FGK
Sbjct: 279 PFFPSVWEVMFGK 291


>gi|116786322|gb|ABK24066.1| unknown [Picea sitchensis]
          Length = 257

 Score =  160 bits (404), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 78/149 (52%), Positives = 108/149 (72%), Gaps = 6/149 (4%)

Query: 109 LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
           LF Q+KDK  MPDVVAHTAV+EAYA AG+ K+AL+VFMRM ASG  PN+Y+Y+VLI+GL 
Sbjct: 113 LFGQMKDKSKMPDVVAHTAVVEAYAKAGKPKDALKVFMRMQASGCLPNSYSYSVLIQGLC 172

Query: 169 AAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
                   +L +A KY +EM+  G +PNA TY  + ++++RAQK DE R LL ++K KGF
Sbjct: 173 QGG-----MLQEAGKYTLEMLSYGWKPNAATYVTLIDSYLRAQKADEMRQLLAKLKEKGF 227

Query: 229 VPDEKAVKEALIDKRGQGFRGVINILFGK 257
           V D+KA ++ +    G+  RGV+++LFG+
Sbjct: 228 VADDKAARQHM-KSMGRFNRGVMDMLFGQ 255


>gi|449453638|ref|XP_004144563.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38150-like [Cucumis sativus]
 gi|449500125|ref|XP_004161011.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38150-like [Cucumis sativus]
          Length = 360

 Score =  152 bits (384), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 86/244 (35%), Positives = 133/244 (54%), Gaps = 6/244 (2%)

Query: 13  SPSPKRSLRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKKVVDEEPTDPR 72
           S SP+RS  ++    +   +  L++ +    K+     S   P  +   +    EP  P 
Sbjct: 116 STSPQRSESLSQKDFSFLEKFKLNTDNQSSGKEKTEENSSSAPVSESMLEKQQSEPQRPP 175

Query: 73  NLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
              EIF KM+  GL  NAV M D L KDGL  EA++LF  I++KG +P+VV +TAV++ +
Sbjct: 176 EADEIFGKMKETGLIPNAVAMLDGLCKDGLIQEAMKLFGLIREKGTIPEVVIYTAVVDGF 235

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             A +  EA+R+F +M  +G+ PNA+++ VLI+GL        K L DA  +  EM+  G
Sbjct: 236 CKAEKFDEAIRIFRKMQHNGIPPNAFSFGVLIQGLY-----KCKKLDDAVAFCNEMLESG 290

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVIN 252
             PN  T+  + +A    + VDEA  +++  K KGF+ DEKA++E L +KR      +  
Sbjct: 291 HLPNLTTFVGLIDALCNEKGVDEAHSVVETFKQKGFLIDEKALREVL-NKRAPFSPDIWK 349

Query: 253 ILFG 256
           + FG
Sbjct: 350 VFFG 353


>gi|388496610|gb|AFK36371.1| unknown [Lotus japonicus]
          Length = 372

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 77/191 (40%), Positives = 118/191 (61%), Gaps = 6/191 (3%)

Query: 67  EPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           +P  P +  EIF KM+  GL  NAV M D L KDGL  EAL+LF  +++KG +P++V +T
Sbjct: 181 QPAMPEDADEIFKKMKETGLIPNAVAMLDGLCKDGLVQEALKLFGLMREKGTIPEIVIYT 240

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
           AV+E Y  A +  +A R+F +M ++G++PNA++Y VL++GL   +      L DA ++ +
Sbjct: 241 AVVEGYTKAHKADDAKRIFRKMQSNGISPNAFSYTVLVQGLCKCSR-----LQDAFEFCV 295

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
           EM+  G  PN  T+  + + FV+ Q V EA+G ++ +  KGFV +EKAVK   +D +   
Sbjct: 296 EMLEAGHSPNMTTFVDLVDGFVKEQGVAEAKGAIRTLIEKGFVVNEKAVK-GFLDMKKPF 354

Query: 247 FRGVINILFGK 257
              V   +FGK
Sbjct: 355 SPSVWEAIFGK 365


>gi|356538160|ref|XP_003537572.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38150-like [Glycine max]
          Length = 388

 Score =  151 bits (381), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 76/187 (40%), Positives = 117/187 (62%), Gaps = 6/187 (3%)

Query: 71  PRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           P++  EIF KM+  GL  NAV M D L KDGL  EAL+LF  +++KG +P++V +TAV+E
Sbjct: 201 PQDADEIFKKMKETGLIPNAVAMLDGLCKDGLVQEALKLFGLMREKGTIPEIVIYTAVVE 260

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
            Y  A +  +A R+F +M +SGV+PNA++Y VLI+GL   +      L DA ++ +EM+ 
Sbjct: 261 GYTKAHKADDAKRIFRKMQSSGVSPNAFSYMVLIQGLYKCSR-----LHDAFEFCVEMLE 315

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGV 250
            G  PN  T+  + + F   + V+EA+  ++ +  KGFV +EKAV++  +DK+      V
Sbjct: 316 AGHSPNVTTFVGLVDGFCNEKGVEEAKSAIKTLTDKGFVVNEKAVRQ-FLDKKAPFSPSV 374

Query: 251 INILFGK 257
              +FGK
Sbjct: 375 WEAIFGK 381


>gi|388501966|gb|AFK39049.1| unknown [Lotus japonicus]
          Length = 108

 Score =  150 bits (380), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 76/111 (68%), Positives = 89/111 (80%), Gaps = 4/111 (3%)

Query: 146 MRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFE 205
           MRMLASGV+PNAYTYAVLI+ L      +AK L DA++Y++EM+ KGMRPNA TYTAVF+
Sbjct: 1   MRMLASGVSPNAYTYAVLIRVLVK----DAKFLKDAKEYVLEMMDKGMRPNAETYTAVFK 56

Query: 206 AFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFG 256
             VR +K+DEA  LL+QMKAKGFVPDEKAV E L DKRG  FR V+NILFG
Sbjct: 57  GLVREEKLDEAVQLLEQMKAKGFVPDEKAVGEVLADKRGSVFRNVMNILFG 107


>gi|356495421|ref|XP_003516576.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38150-like [Glycine max]
          Length = 397

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 75/187 (40%), Positives = 114/187 (60%), Gaps = 6/187 (3%)

Query: 71  PRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           P++  EIF KM+  GL  NAV M D L KDGL  EAL+LF  I++KG +P++V +TAV+E
Sbjct: 210 PQDANEIFKKMKETGLIPNAVAMLDGLCKDGLVQEALKLFGLIREKGTIPEIVIYTAVVE 269

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
            Y  A +  +A R+F +M +SG++PNA++Y VLI+GL          L DA ++ +EM+ 
Sbjct: 270 GYTKAHKADDAKRIFRKMQSSGISPNAFSYTVLIQGLY-----KCNRLHDAFEFCVEMLE 324

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGV 250
            G  PN   +  + + F   + V+EA+  ++ +  KGFV +EKAV +  +DK+      V
Sbjct: 325 AGHSPNVTAFVGLVDGFCNEKGVEEAKSAIKTLTEKGFVVNEKAVGQ-FLDKKAPFSPSV 383

Query: 251 INILFGK 257
              +FGK
Sbjct: 384 WEAIFGK 390


>gi|115437384|ref|NP_001043282.1| Os01g0546500 [Oryza sativa Japonica Group]
 gi|20146451|dbj|BAB89231.1| fertility restorer -like protein [Oryza sativa Japonica Group]
 gi|113532813|dbj|BAF05196.1| Os01g0546500 [Oryza sativa Japonica Group]
 gi|215697396|dbj|BAG91390.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222618638|gb|EEE54770.1| hypothetical protein OsJ_02158 [Oryza sativa Japonica Group]
          Length = 342

 Score =  147 bits (372), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 82/230 (35%), Positives = 131/230 (56%), Gaps = 16/230 (6%)

Query: 28  NATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKKVVDEEPTDPRNLQEIFHKMRTEGLT 87
           +A    +  +S ++P  +   TK   PPP        + E   P ++ EIF KM+  GL 
Sbjct: 122 DAAATSAAGNSGERPQPEREPTKP--PPP--------EHEAAQPEDVDEIFRKMKETGLI 171

Query: 88  NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMR 147
            NAV M D L K GL  EA++LF  +++KG +P+VV +TAV+EA+  A +  +A+R+F +
Sbjct: 172 PNAVAMLDGLCKSGLVQEAMKLFGLMREKGSIPEVVVYTAVVEAFCKARKLDDAVRIFKK 231

Query: 148 MLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAF 207
           M  +GV PNA++Y +LI+GL          L DA  + +EM   G  PNA T+  + +  
Sbjct: 232 MQGNGVIPNAFSYWLLIQGLCKGGR-----LDDAVAFCVEMFEAGHSPNAMTFVGLVDEV 286

Query: 208 VRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257
            +A+ V+EA  L++  + + F  DEK+++E L DK+G     +  ++FGK
Sbjct: 287 CKAKGVEEAEKLVRSFQDRNFAIDEKSIREHL-DKKGPFSPVIWEVIFGK 335


>gi|15233698|ref|NP_195528.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|79326453|ref|NP_001031806.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75266764|sp|Q9SZL5.1|PP356_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g38150
 gi|4467121|emb|CAB37555.1| putative protein [Arabidopsis thaliana]
 gi|7270799|emb|CAB80480.1| putative protein [Arabidopsis thaliana]
 gi|26453272|dbj|BAC43709.1| unknown protein [Arabidopsis thaliana]
 gi|332661484|gb|AEE86884.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332661485|gb|AEE86885.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 302

 Score =  145 bits (367), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 73/174 (41%), Positives = 109/174 (62%), Gaps = 6/174 (3%)

Query: 71  PRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           P +  EIF KM+  GL  NAV M D L KDGL  EA++LF  ++DKG +P+VV +TAV+E
Sbjct: 115 PEDSDEIFKKMKEGGLIPNAVAMLDGLCKDGLVQEAMKLFGLMRDKGTIPEVVIYTAVVE 174

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
           A+  A + ++A R+F +M  +G+APNA++Y VL++GL      N  +L DA  +  EM+ 
Sbjct: 175 AFCKAHKIEDAKRIFRKMQNNGIAPNAFSYGVLVQGLY-----NCNMLDDAVAFCSEMLE 229

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRG 244
            G  PN  T+  + +A  R + V++A+  +  +  KGF  + KAVKE  +DKR 
Sbjct: 230 SGHSPNVPTFVELVDALCRVKGVEQAQSAIDTLNQKGFAVNVKAVKE-FMDKRA 282


>gi|225428364|ref|XP_002283311.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38150-like [Vitis vinifera]
          Length = 380

 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 79/192 (41%), Positives = 117/192 (60%), Gaps = 8/192 (4%)

Query: 66  EEPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAH 125
           E+P  P+N  EIF KM+  GL  NAV M D L KDGL  EA++LF  +++KG +P+VV +
Sbjct: 190 EQP--PQNADEIFRKMKESGLIPNAVAMLDGLCKDGLVQEAMKLFGLMREKGTIPEVVIY 247

Query: 126 TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185
           TAV+E +  A Q  +A+R+F +M  +G++PNA++Y VLI+G+     GN   L  A  + 
Sbjct: 248 TAVVEGFCKARQLNDAVRIFRKMQNNGISPNAFSYTVLIRGMYK---GNR--LDIAVDFC 302

Query: 186 MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
           +EM+  G  PN  T   +   F + + V+EA+ ++  +K KG   D+KAV+E L DK+G 
Sbjct: 303 VEMLEAGHSPNVATLVDLIHEFCKEKGVEEAKNVIVTLKQKGLFVDDKAVREYL-DKKGP 361

Query: 246 GFRGVINILFGK 257
               V    FGK
Sbjct: 362 QSPLVWEAFFGK 373


>gi|242057677|ref|XP_002457984.1| hypothetical protein SORBIDRAFT_03g024570 [Sorghum bicolor]
 gi|241929959|gb|EES03104.1| hypothetical protein SORBIDRAFT_03g024570 [Sorghum bicolor]
          Length = 322

 Score =  145 bits (366), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 73/190 (38%), Positives = 117/190 (61%), Gaps = 6/190 (3%)

Query: 68  PTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P  P ++ EIF KM+  GL  NAV M D L K+GL  +A++LF  +++KG +P+VV +TA
Sbjct: 132 PAQPVDVDEIFRKMKETGLIPNAVAMLDGLCKNGLVQDAMKLFGLMREKGAIPEVVIYTA 191

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           V+EA+  A +  +A+R+F +M  +GV PNA++Y +LI+GL          L DA  + +E
Sbjct: 192 VVEAFCKAAKLDDAVRIFRKMQGNGVIPNAFSYWLLIQGLYKGGR-----LDDAVGFCVE 246

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGF 247
           M   G+ PNA T+  + +A  + + VD+   L++  + + F  DEK+++E L DK+G   
Sbjct: 247 MFEAGLAPNAETFVGLLDAVCKTKGVDDGEKLVRSFQDRNFAIDEKSIREHL-DKKGPFS 305

Query: 248 RGVINILFGK 257
             V  ++FGK
Sbjct: 306 PVVWEVIFGK 315


>gi|147854551|emb|CAN78573.1| hypothetical protein VITISV_020581 [Vitis vinifera]
          Length = 381

 Score =  145 bits (365), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 79/192 (41%), Positives = 117/192 (60%), Gaps = 8/192 (4%)

Query: 66  EEPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAH 125
           E+P  P+N  EIF KM+  GL  NAV M D L KDGL  EA++LF  +++KG +P+VV +
Sbjct: 191 EQP--PQNADEIFRKMKESGLIPNAVAMLDGLCKDGLVQEAMKLFGLMREKGTIPEVVIY 248

Query: 126 TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185
           TAV+E +  A Q  +A+R+F +M  +G++PNA++Y VLI+G+     GN   L  A  + 
Sbjct: 249 TAVVEGFCKARQLDDAVRIFRKMQNNGISPNAFSYTVLIRGMYK---GNR--LDIAVDFC 303

Query: 186 MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
           +EM+  G  PN  T   +   F + + V+EA+ ++  +K KG   D+KAV+E L DK+G 
Sbjct: 304 VEMLEAGHSPNVATLVDLIHEFCKEKGVEEAKNVIVTLKQKGLFVDDKAVREYL-DKKGP 362

Query: 246 GFRGVINILFGK 257
               V    FGK
Sbjct: 363 QSPLVWEAFFGK 374


>gi|18700180|gb|AAL77701.1| AT4g38150/F20D10_270 [Arabidopsis thaliana]
 gi|23505863|gb|AAN28791.1| At4g38150/F20D10_270 [Arabidopsis thaliana]
          Length = 302

 Score =  144 bits (364), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 72/173 (41%), Positives = 109/173 (63%), Gaps = 6/173 (3%)

Query: 71  PRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           P +  EIF KM+  GL  NAV M D L KDGL  EA++LF  ++DKG +P+VV +TAV+E
Sbjct: 115 PEDSDEIFKKMKEGGLIPNAVAMLDGLCKDGLVQEAMKLFGLMRDKGTIPEVVIYTAVVE 174

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
           A+  A + ++A R+F +M  +G+APNA++Y VL++GL      N  +L DA  +  +M+ 
Sbjct: 175 AFCKAHKIEDAKRIFRKMQNNGIAPNAFSYGVLVQGLY-----NCNMLDDAVAFCSDMLE 229

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKR 243
            G  PN  T+  + +A  R + V++A+  +  +  KGF  + KAVKE  +DKR
Sbjct: 230 SGHSPNVPTFVELVDALCRVKGVEQAQSAIDTLNQKGFAVNVKAVKE-FMDKR 281


>gi|413948243|gb|AFW80892.1| hypothetical protein ZEAMMB73_530785 [Zea mays]
          Length = 320

 Score =  144 bits (362), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 72/190 (37%), Positives = 116/190 (61%), Gaps = 6/190 (3%)

Query: 68  PTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P  P ++ EIF KM+  GL  NAV M D L K+GL  +A++LF  +++KG +P+VV +TA
Sbjct: 130 PAQPVDVDEIFRKMKETGLIPNAVAMLDGLCKNGLVQDAMKLFGLMREKGAIPEVVIYTA 189

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           V+EA+    +  +A+R+F +M  +GV PNA++Y +LI+GL          L DA  + +E
Sbjct: 190 VVEAFCKVAKLDDAVRIFRKMQGNGVIPNAFSYWLLIQGLYKGGR-----LDDAVGFCVE 244

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGF 247
           M   G+ PNA T+  + +A  + + VDE   L++  + + F  DEK++++ L DK+G   
Sbjct: 245 MFEAGLAPNAETFVGLLDAVCKTKGVDEGENLVRSFQDRNFAIDEKSIRDHL-DKKGPFS 303

Query: 248 RGVINILFGK 257
             V  ++FGK
Sbjct: 304 PVVWEVIFGK 313


>gi|224131960|ref|XP_002328150.1| predicted protein [Populus trichocarpa]
 gi|222837665|gb|EEE76030.1| predicted protein [Populus trichocarpa]
          Length = 347

 Score =  143 bits (361), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 72/191 (37%), Positives = 118/191 (61%), Gaps = 8/191 (4%)

Query: 67  EPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           EP+  ++ ++IF+KM+  GL  NAV M D L KDGL  EAL+LF  +++KG +P+VV +T
Sbjct: 158 EPS--QDAEQIFNKMKETGLIPNAVAMLDGLCKDGLVQEALKLFGTMREKGTIPEVVIYT 215

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
           AV++ +  A +  +A R+F +M ++G+ PNA++YAVLI+GL+        +  DA  +  
Sbjct: 216 AVVDGFCKAHKLDDAKRIFRKMQSNGITPNAFSYAVLIQGLSK-----CNLFDDAIDFCF 270

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
           EM+  G  PN  T+  + +   R + V+EAR ++  ++ KGF   +KAV++  +DK    
Sbjct: 271 EMLELGHSPNVTTFVGLIDGLCREKGVEEARTVIGTLRQKGFHVHDKAVRD-FLDKNKPL 329

Query: 247 FRGVINILFGK 257
              V + +FGK
Sbjct: 330 SSSVWDAIFGK 340


>gi|297801902|ref|XP_002868835.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314671|gb|EFH45094.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 301

 Score =  143 bits (361), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 71/173 (41%), Positives = 107/173 (61%), Gaps = 6/173 (3%)

Query: 71  PRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           P +  EIF KM+  GL  NAV M D L KDGL  EA++LF  ++DKG +P+VV +TAV+E
Sbjct: 114 PEDSDEIFKKMKEGGLIPNAVAMLDGLCKDGLVQEAMKLFGLMRDKGTIPEVVIYTAVVE 173

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
            +  A + ++A R+F +M  +G+ PNA++Y VL++GL      N  +L DA  +  EM+ 
Sbjct: 174 GFCKAHKIEDAKRIFRKMQTNGITPNAFSYGVLVQGLY-----NCNMLDDAVTFCCEMLE 228

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKR 243
            G  PN  T+  + +A  R + V++A+  +  +  KGF  + KAVKE  +DKR
Sbjct: 229 SGHSPNIPTFVGLVDALCREKGVEQAQSAIDGLNQKGFALNVKAVKE-FMDKR 280


>gi|357135151|ref|XP_003569175.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38150-like [Brachypodium distachyon]
          Length = 334

 Score =  142 bits (359), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 74/191 (38%), Positives = 118/191 (61%), Gaps = 6/191 (3%)

Query: 67  EPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           +P    ++ EIF KM+  GL  NAV M D L K GL  EA++LF  +++KG +P+VV +T
Sbjct: 143 QPQQSEDVDEIFRKMKETGLIPNAVAMLDGLCKSGLVQEAMKLFGLMREKGAIPEVVIYT 202

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
           AV+EA+  A +  +A+R+F +M  +GV PNA++Y ++I+GL     GN   L DA  + +
Sbjct: 203 AVVEAFCKAAKLDDAVRIFRKMQGNGVIPNAFSYWLIIQGL---YKGNR--LDDAVGFCV 257

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
           EM   G  PNA T+  + +A  +++ V+E   L++  + + F  DEK+++E L DK+G  
Sbjct: 258 EMFEAGHSPNAATFVGLVDAVCKSKGVEEGEKLVKSFQDRNFAIDEKSIREHL-DKKGPF 316

Query: 247 FRGVINILFGK 257
              V  ++FGK
Sbjct: 317 TPVVWEVIFGK 327


>gi|358344319|ref|XP_003636237.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502172|gb|AES83375.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 206

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 69/187 (36%), Positives = 115/187 (61%), Gaps = 6/187 (3%)

Query: 71  PRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           P++   IF+KM+  GL  NAV M D L KDG   EAL+LF  +++KG +PD+V +TAV++
Sbjct: 19  PQDADAIFNKMKETGLIPNAVAMLDGLCKDGNFQEALKLFGLMREKGTIPDIVIYTAVVD 78

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
            Y  A +  +A+R+F +M ++ ++PNA++Y VLI+GL   +      L DA ++ +EM+ 
Sbjct: 79  GYTKAHKADDAIRIFRKMQSNSISPNAFSYTVLIQGLYKCSK-----LHDAVEFCVEMLE 133

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGV 250
            G   N  T+  + + F +   ++EA+G+++ +  KGF  DEKAV+   +DK+      +
Sbjct: 134 AGHSLNVTTFVGLVDGFCKENGIEEAKGVIKTLIGKGFAFDEKAVR-VFLDKKAPFSPSI 192

Query: 251 INILFGK 257
              +FGK
Sbjct: 193 WEAIFGK 199


>gi|326528431|dbj|BAJ93404.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 332

 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 71/191 (37%), Positives = 116/191 (60%), Gaps = 6/191 (3%)

Query: 67  EPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           +P    ++ EIF KM+  GL  NAV M D+L K+GL  EA++LF  +++KG +PDVV +T
Sbjct: 141 QPPQTEDVDEIFRKMKETGLIPNAVAMLDSLCKNGLVPEAMKLFGLMREKGAIPDVVIYT 200

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
           AV+EA+    +  +A+R+F +M  +GV PNA++Y ++I+GL          L +A  + +
Sbjct: 201 AVVEAFCKGAKLDDAVRIFRKMQGNGVIPNAFSYWLIIQGLC-----KGDRLDEAVAFCV 255

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
           EM   G  PNA T+  + +A  + + V+E   L++  + + F  DEK+++E L DK+G  
Sbjct: 256 EMFEAGHSPNAATFVGLVDAVCKMKGVEEGENLVRSFQERNFAIDEKSIREHL-DKKGPF 314

Query: 247 FRGVINILFGK 257
              V  ++FGK
Sbjct: 315 SPIVWEVIFGK 325


>gi|326499952|dbj|BAJ90811.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 332

 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 71/191 (37%), Positives = 116/191 (60%), Gaps = 6/191 (3%)

Query: 67  EPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           +P    ++ EIF KM+  GL  NAV M D+L K+GL  EA++LF  +++KG +PDVV +T
Sbjct: 141 QPPQTEDVDEIFRKMKETGLIPNAVAMLDSLCKNGLVPEAMKLFGLMREKGAIPDVVIYT 200

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
           AV+EA+    +  +A+R+F +M  +GV PNA++Y ++I+GL          L +A  + +
Sbjct: 201 AVVEAFCKGAKLDDAVRIFRKMQGNGVIPNAFSYWLIIQGLC-----KGDRLDEAVAFCV 255

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
           EM   G  PNA T+  + +A  + + V+E   L++  + + F  DEK+++E L DK+G  
Sbjct: 256 EMFEAGHSPNAATFVGLVDAVCKMKGVEEGENLVRSFQERNFAIDEKSIREHL-DKKGPF 314

Query: 247 FRGVINILFGK 257
              V  ++FGK
Sbjct: 315 SPIVWEVIFGK 325


>gi|357483361|ref|XP_003611967.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|358344399|ref|XP_003636277.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502212|gb|AES83415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513302|gb|AES94925.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 379

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 69/187 (36%), Positives = 115/187 (61%), Gaps = 6/187 (3%)

Query: 71  PRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           P++   IF+KM+  GL  NAV M D L KDG   EAL+LF  +++KG +PD+V +TAV++
Sbjct: 192 PQDADAIFNKMKETGLIPNAVAMLDGLCKDGNFQEALKLFGLMREKGTIPDIVIYTAVVD 251

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
            Y  A +  +A+R+F +M ++ ++PNA++Y VLI+GL   +      L DA ++ +EM+ 
Sbjct: 252 GYTKAHKADDAIRIFRKMQSNSISPNAFSYTVLIQGLYKCSK-----LHDAVEFCVEMLE 306

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGV 250
            G   N  T+  + + F +   ++EA+G+++ +  KGF  DEKAV+   +DK+      +
Sbjct: 307 AGHSLNVTTFVGLVDGFCKENGIEEAKGVIKTLIGKGFAFDEKAVR-VFLDKKAPFSPSI 365

Query: 251 INILFGK 257
              +FGK
Sbjct: 366 WEAIFGK 372


>gi|255546664|ref|XP_002514391.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546488|gb|EEF47987.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 313

 Score =  138 bits (347), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 67/183 (36%), Positives = 110/183 (60%), Gaps = 6/183 (3%)

Query: 75  QEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
            +IF+KM+  GL  NAV M D L KDGL  EA++LF  ++ KG +P+VV +TAV++ +  
Sbjct: 130 NDIFNKMKETGLIPNAVAMLDGLCKDGLVQEAMKLFGLMRQKGTIPEVVVYTAVVDGFCK 189

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
           A +  +A R+F +M+ +G+ PNA++Y V I+GL      NA  + DA  +  +M+  G  
Sbjct: 190 AHKTDDAKRIFKKMIDNGITPNAFSYTVTIQGLCKC---NA--VDDAVDFCFQMLDAGHS 244

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINIL 254
           PN  T+  + +   R + VDEA+ +++ ++ KGF  + KA++E  +DK       +   +
Sbjct: 245 PNVTTFVGLVDGLCREKGVDEAQNVIEDLRKKGFYINGKAIRE-FLDKNAPLSSDLSQAI 303

Query: 255 FGK 257
           FGK
Sbjct: 304 FGK 306


>gi|308081228|ref|NP_001183307.1| uncharacterized protein LOC100501704 [Zea mays]
 gi|238010656|gb|ACR36363.1| unknown [Zea mays]
          Length = 178

 Score =  130 bits (328), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 66/177 (37%), Positives = 108/177 (61%), Gaps = 6/177 (3%)

Query: 81  MRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140
           M+  GL  NAV M D L K+GL  +A++LF  +++KG +P+VV +TAV+EA+    +  +
Sbjct: 1   MKETGLIPNAVAMLDGLCKNGLVQDAMKLFGLMREKGAIPEVVIYTAVVEAFCKVAKLDD 60

Query: 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTY 200
           A+R+F +M  +GV PNA++Y +LI+GL          L DA  + +EM   G+ PNA T+
Sbjct: 61  AVRIFRKMQGNGVIPNAFSYWLLIQGLYKGGR-----LDDAVGFCVEMFEAGLAPNAETF 115

Query: 201 TAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257
             + +A  + + VDE   L++  + + F  DEK++++ L DK+G     V  ++FGK
Sbjct: 116 VGLLDAVCKTKGVDEGENLVRSFQDRNFAIDEKSIRDHL-DKKGPFSPVVWEVIFGK 171


>gi|357123295|ref|XP_003563347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Brachypodium distachyon]
          Length = 800

 Score =  103 bits (256), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 60/157 (38%), Positives = 82/157 (52%), Gaps = 8/157 (5%)

Query: 77  IFHKMRTEGLTNN---AVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +MR  G+  +   A  +  A  +DGL  EA+  F  +K +GH+P VV + A+++ + 
Sbjct: 245 MLEEMRAAGVEPDGFTASTVIAACGRDGLVDEAVAFFEDLKSRGHVPCVVTYNALLQVFG 304

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG   EALRV   M  SG  P+A TY  L     A +   A    +A K L  MV KG+
Sbjct: 305 KAGNYMEALRVLKEMEESGCKPDAVTYNEL-----AGSYARAGFYEEAAKCLDTMVSKGI 359

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
            PNA TY  +  A+  A KVDEA  L   MK  GF+P
Sbjct: 360 LPNAFTYNTIMTAYGNAGKVDEALALFDWMKKNGFIP 396



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 84/165 (50%), Gaps = 8/165 (4%)

Query: 72  RNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R   E+F  ++  GL+ + +    M D  +K   + EA ++  ++K     PDVV++  V
Sbjct: 625 RKAGEMFDSIKQGGLSPDLITYNSMMDMYAKSNESWEAEKILKRLKTSQLKPDVVSYNTV 684

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           +  +   G  KEA R+   M+A GV P   TY  L+ G A+      ++  +A++ +  M
Sbjct: 685 MNGFCKQGLIKEAQRILSEMIADGVRPCVVTYHTLVGGYAS-----REMFSEAREVVSYM 739

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK 233
           + + + P   TY  V +++ +A++ DEARG L ++       D+K
Sbjct: 740 IQRNLSPMELTYRRVVDSYCKAKRFDEARGFLYEIAETDRNSDQK 784



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 70/140 (50%), Gaps = 5/140 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M    +K+G+  +A ++F  IK  G  PD++ + ++++ YA + +  EA ++  R+  S 
Sbjct: 614 MLSMYAKNGMYRKAGEMFDSIKQGGLSPDLITYNSMMDMYAKSNESWEAEKILKRLKTSQ 673

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+  +Y  ++ G          ++ +AQ+ L EM+  G+RP   TY  +   +   + 
Sbjct: 674 LKPDVVSYNTVMNGFCKQG-----LIKEAQRILSEMIADGVRPCVVTYHTLVGGYASREM 728

Query: 213 VDEARGLLQQMKAKGFVPDE 232
             EAR ++  M  +   P E
Sbjct: 729 FSEAREVVSYMIQRNLSPME 748



 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 74/146 (50%), Gaps = 6/146 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGK-EALRVFMRMLAS 151
           +  ALS +G    AL+LFA++K +G  P  V +  +++ Y   G+   + + +   M A+
Sbjct: 193 VLHALSHEGRYERALELFAELKREGVAPTHVMYNVMLDVYGRMGRSWPQIVAMLEEMRAA 252

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           GV P+ +T + +I     AA G   ++ +A  +  ++  +G  P   TY A+ + F +A 
Sbjct: 253 GVEPDGFTASTVI-----AACGRDGLVDEAVAFFEDLKSRGHVPCVVTYNALLQVFGKAG 307

Query: 212 KVDEARGLLQQMKAKGFVPDEKAVKE 237
              EA  +L++M+  G  PD     E
Sbjct: 308 NYMEALRVLKEMEESGCKPDAVTYNE 333



 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 60/121 (49%), Gaps = 5/121 (4%)

Query: 110 FAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169
           F ++  +GH PD+V   +++  YA  G  ++A  +F  +   G++P+  TY  ++   A 
Sbjct: 596 FQEVMARGHKPDLVIFNSMLSMYAKNGMYRKAGEMFDSIKQGGLSPDLITYNSMMDMYAK 655

Query: 170 AADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFV 229
           + +       +A+K L  +    ++P+  +Y  V   F +   + EA+ +L +M A G  
Sbjct: 656 SNES-----WEAEKILKRLKTSQLKPDVVSYNTVMNGFCKQGLIKEAQRILSEMIADGVR 710

Query: 230 P 230
           P
Sbjct: 711 P 711



 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/154 (23%), Positives = 68/154 (44%), Gaps = 8/154 (5%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +M   G   +AV   ++  + ++ G   EA +    +  KG +P+   +  ++ AY 
Sbjct: 315 VLKEMEESGCKPDAVTYNELAGSYARAGFYEEAAKCLDTMVSKGILPNAFTYNTIMTAYG 374

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
           +AG+  EAL +F  M  +G  P   TY +++  L   +  N  +     + L EM   G 
Sbjct: 375 NAGKVDEALALFDWMKKNGFIPYVNTYNLILGMLGKKSRFNVML-----EMLGEMSRSGC 429

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
            PN  T+  +     +         +L++MK+ G
Sbjct: 430 TPNRVTWNTMLAVCGKRGMEGYVTRVLERMKSCG 463



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 63/167 (37%), Gaps = 24/167 (14%)

Query: 85  GLTNNAVKMFDALSKDGLT-------------------HEALQLFAQIKDKGHMPDVVAH 125
           G  + A+ +FD + K+G                     +  L++  ++   G  P+ V  
Sbjct: 377 GKVDEALALFDWMKKNGFIPYVNTYNLILGMLGKKSRFNVMLEMLGEMSRSGCTPNRVTW 436

Query: 126 TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185
             ++      G      RV  RM + GV     T+  LI     +A G      +A K  
Sbjct: 437 NTMLAVCGKRGMEGYVTRVLERMKSCGVELCRDTFNTLI-----SAYGRCGSRANAFKMY 491

Query: 186 MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
            EM   G  P   TY A+     R      A+ ++ +MK +GF P++
Sbjct: 492 DEMTAAGFTPCLTTYNALLSVLSRQGDWTAAQSIINKMKNEGFKPND 538


>gi|361067395|gb|AEW08009.1| Pinus taeda anonymous locus 0_16864_01 genomic sequence
 gi|383132887|gb|AFG47335.1| Pinus taeda anonymous locus 0_16864_01 genomic sequence
 gi|383132889|gb|AFG47336.1| Pinus taeda anonymous locus 0_16864_01 genomic sequence
 gi|383132891|gb|AFG47337.1| Pinus taeda anonymous locus 0_16864_01 genomic sequence
 gi|383132893|gb|AFG47338.1| Pinus taeda anonymous locus 0_16864_01 genomic sequence
 gi|383132895|gb|AFG47339.1| Pinus taeda anonymous locus 0_16864_01 genomic sequence
 gi|383132897|gb|AFG47340.1| Pinus taeda anonymous locus 0_16864_01 genomic sequence
 gi|383132899|gb|AFG47341.1| Pinus taeda anonymous locus 0_16864_01 genomic sequence
 gi|383132901|gb|AFG47342.1| Pinus taeda anonymous locus 0_16864_01 genomic sequence
 gi|383132903|gb|AFG47343.1| Pinus taeda anonymous locus 0_16864_01 genomic sequence
 gi|383132905|gb|AFG47344.1| Pinus taeda anonymous locus 0_16864_01 genomic sequence
 gi|383132907|gb|AFG47345.1| Pinus taeda anonymous locus 0_16864_01 genomic sequence
 gi|383132909|gb|AFG47346.1| Pinus taeda anonymous locus 0_16864_01 genomic sequence
 gi|383132911|gb|AFG47347.1| Pinus taeda anonymous locus 0_16864_01 genomic sequence
 gi|383132913|gb|AFG47348.1| Pinus taeda anonymous locus 0_16864_01 genomic sequence
 gi|383132915|gb|AFG47349.1| Pinus taeda anonymous locus 0_16864_01 genomic sequence
 gi|383132917|gb|AFG47350.1| Pinus taeda anonymous locus 0_16864_01 genomic sequence
 gi|383132919|gb|AFG47351.1| Pinus taeda anonymous locus 0_16864_01 genomic sequence
 gi|383132921|gb|AFG47352.1| Pinus taeda anonymous locus 0_16864_01 genomic sequence
          Length = 129

 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/128 (39%), Positives = 79/128 (61%), Gaps = 6/128 (4%)

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
           E +  A +  +A R+F +M  +GV PNA++Y +LI+GL        K L +A  Y +EM+
Sbjct: 1   EGFCRAKKLDDAKRIFKKMKDNGVVPNAFSYCILIQGLC-----KDKRLEEAVDYSLEML 55

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRG 249
            +G RPN  ++ ++ + F +  + DEA+G++ Q K KGF+ DEKAV+E + DK+G  F  
Sbjct: 56  DQGWRPNVASFVSIIDGFCKELRSDEAKGVINQFKEKGFIADEKAVREYM-DKKGPFFPS 114

Query: 250 VINILFGK 257
           V   +FGK
Sbjct: 115 VWEAIFGK 122


>gi|358344317|ref|XP_003636236.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502171|gb|AES83374.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 146

 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 48/145 (33%), Positives = 89/145 (61%), Gaps = 6/145 (4%)

Query: 113 IKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172
           +++KG +PD+V +TAV++ Y  A +  +A+R+F +M ++ ++PNA++Y VLI+GL   + 
Sbjct: 1   MREKGTIPDIVIYTAVVDGYTKAHKADDAIRIFRKMQSNSISPNAFSYTVLIQGLYKCSK 60

Query: 173 GNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
                L DA ++ +EM+  G   N  T+  + + F +   ++EA+G+++ +  KGF  DE
Sbjct: 61  -----LHDAVEFCVEMLEAGHSLNVTTFVGLVDGFCKENGIEEAKGVIKTLIGKGFAFDE 115

Query: 233 KAVKEALIDKRGQGFRGVINILFGK 257
           KAV+   +DK+      +   +FGK
Sbjct: 116 KAVR-VFLDKKAPFSPSIWEAIFGK 139


>gi|254939549|ref|NP_001157212.1| pentatricopeptide repeat10 [Zea mays]
 gi|218684531|gb|ACL01094.1| chloroplast pentatricopeptide repeat protein 10 [Zea mays]
 gi|223948163|gb|ACN28165.1| unknown [Zea mays]
 gi|413943497|gb|AFW76146.1| pentatricopeptide repeat10 [Zea mays]
          Length = 786

 Score =  100 bits (249), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 59/158 (37%), Positives = 80/158 (50%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNN---AVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +MR  G+  +   A  +  A  +DGL  EA+  F  +K +GH P VV + A+++ + 
Sbjct: 232 LLDEMRAAGVEPDGFTASTVIAACCRDGLVDEAVAFFEDLKARGHAPCVVTYNALLQVFG 291

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG   EALRV   M  +G  P+A TY  L     A     A    +A + L  M  KG+
Sbjct: 292 KAGNYTEALRVLGEMEQNGCQPDAVTYNEL-----AGTYARAGFFEEAARCLDTMASKGL 346

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            PNA TY  V  A+    KVDEA  L  QMK  GFVP+
Sbjct: 347 LPNAFTYNTVMTAYGNVGKVDEALALFDQMKKTGFVPN 384



 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 93/170 (54%), Gaps = 10/170 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHM-PDVVAHTAVIEA 131
           E+F  ++  GL+ + +    + D  +K   + EA ++  Q+K    M PDVV++  VI  
Sbjct: 617 EVFDSIKRSGLSPDLITYNSLMDMYAKCSESWEAEKILNQLKCSQTMKPDVVSYNTVING 676

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +   G  KEA RV   M+A G+AP A TY  L+ G ++      ++  +A++ +  MV  
Sbjct: 677 FCKQGLVKEAQRVLSEMVADGMAPCAVTYHTLVGGYSS-----LEMFSEAREVIGYMVQH 731

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           G++P   TY  V E++ RA++ +EARG L ++       D+KA+ EA I+
Sbjct: 732 GLKPMELTYRRVVESYCRAKRFEEARGFLSEVSETDLDFDKKAL-EAYIE 780



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 84/182 (46%), Gaps = 16/182 (8%)

Query: 57  YDPFKKVVDEEPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDK 116
           +D    ++DE P  P +  ++               +  ALS+ G    AL+LFA+++ +
Sbjct: 154 HDAVCALLDETPLPPGSRLDV----------RAYTTVLHALSRAGRYERALELFAELRRQ 203

Query: 117 GHMPDVVAHTAVIEAYASAGQGKEALRVFM-RMLASGVAPNAYTYAVLIKGLAAAADGNA 175
           G  P +V +  V++ Y   G+    +   +  M A+GV P+ +T + +I   A   DG  
Sbjct: 204 GVAPTLVTYNVVLDVYGRMGRSWPRIVALLDEMRAAGVEPDGFTASTVIA--ACCRDG-- 259

Query: 176 KILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAV 235
            ++ +A  +  ++  +G  P   TY A+ + F +A    EA  +L +M+  G  PD    
Sbjct: 260 -LVDEAVAFFEDLKARGHAPCVVTYNALLQVFGKAGNYTEALRVLGEMEQNGCQPDAVTY 318

Query: 236 KE 237
            E
Sbjct: 319 NE 320



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 63/122 (51%), Gaps = 6/122 (4%)

Query: 110 FAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169
           F ++K +G+ PD+V   +++  YA  G   +A  VF  +  SG++P+  TY  L+   A 
Sbjct: 584 FQEVKARGYNPDLVIFNSMLSIYAKNGMYSKATEVFDSIKRSGLSPDLITYNSLMDMYAK 643

Query: 170 AADGNAKILGDAQKYLMEM-VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
            ++       +A+K L ++   + M+P+  +Y  V   F +   V EA+ +L +M A G 
Sbjct: 644 CSES-----WEAEKILNQLKCSQTMKPDVVSYNTVINGFCKQGLVKEAQRVLSEMVADGM 698

Query: 229 VP 230
            P
Sbjct: 699 AP 700



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 72/191 (37%), Gaps = 33/191 (17%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
               M ++GL  NA     +  A    G   EAL LF Q+K  G +P+V  +  V+    
Sbjct: 337 CLDTMASKGLLPNAFTYNTVMTAYGNVGKVDEALALFDQMKKTGFVPNVNTYNLVLGMLG 396

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLI----------------KGLAA-------- 169
              +    L +   M  SG  PN  T+  ++                +G+ +        
Sbjct: 397 KKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMRSCGVELSRD 456

Query: 170 ------AADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
                 AA G      +A K   EM   G  P   TY A+     R      A+ ++ +M
Sbjct: 457 TYNTLIAAYGRCGSRTNAFKMYNEMTSAGFTPCITTYNALLNVLSRQGDWSTAQSIVSKM 516

Query: 224 KAKGFVPDEKA 234
           + KGF P+E++
Sbjct: 517 RTKGFKPNEQS 527



 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 72/160 (45%), Gaps = 20/160 (12%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +M   G   +AV   ++    ++ G   EA +    +  KG +P+   +  V+ AY 
Sbjct: 302 VLGEMEQNGCQPDAVTYNELAGTYARAGFFEEAARCLDTMASKGLLPNAFTYNTVMTAYG 361

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKY--LMEMVGK 191
           + G+  EAL +F +M  +G  PN  TY +++            +LG   ++  ++EM+G+
Sbjct: 362 NVGKVDEALALFDQMKKTGFVPNVNTYNLVL-----------GMLGKKSRFTVMLEMLGE 410

Query: 192 ----GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
               G  PN  T+  +     +    D    +L+ M++ G
Sbjct: 411 MSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMRSCG 450



 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 58/141 (41%), Gaps = 8/141 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+  +M   G T N V    M     K G+     ++   ++  G       +  +I AY
Sbjct: 406 EMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMRSCGVELSRDTYNTLIAAY 465

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G    A +++  M ++G  P   TY  L+  L+   D +      AQ  + +M  KG
Sbjct: 466 GRCGSRTNAFKMYNEMTSAGFTPCITTYNALLNVLSRQGDWST-----AQSIVSKMRTKG 520

Query: 193 MRPNAGTYTAVFEAFVRAQKV 213
            +PN  +Y+ + + + +   V
Sbjct: 521 FKPNEQSYSLLLQCYAKGGNV 541


>gi|326487476|dbj|BAJ89722.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 805

 Score = 99.0 bits (245), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/147 (38%), Positives = 78/147 (53%), Gaps = 7/147 (4%)

Query: 84  EGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALR 143
           +G T + V    A  +DGL  EA+  F  +K +GH P VV + A+++ +  AG   EALR
Sbjct: 253 DGFTASTV--IAAAGRDGLVDEAVAFFEDLKARGHAPCVVTYNALLQVFGKAGNYTEALR 310

Query: 144 VFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAV 203
           V   M  +G  P+A TY  L     A +   A    +A K +  M+GKG+ PN  TY  +
Sbjct: 311 VLREMEDAGCKPDAVTYNEL-----AGSYARAGFYQEAAKCIDTMIGKGLLPNTFTYNTI 365

Query: 204 FEAFVRAQKVDEARGLLQQMKAKGFVP 230
             A+  A KVDEA  L  +MK  GF+P
Sbjct: 366 MTAYGNAGKVDEALALFDRMKKNGFIP 392



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 81/170 (47%), Gaps = 17/170 (10%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHM---------PDVV 123
           E+F  +   GL+ + +    + D  +K     EA ++  +++              PDVV
Sbjct: 625 EMFESIEQLGLSPDLITYNSLMDMYAKSNEPWEAEKILNRLRSSQSQQQQQQQQLKPDVV 684

Query: 124 AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQK 183
           ++  VI  +   G  KEA RV   M+A GVAP   TY  L+ G A+      ++  +A++
Sbjct: 685 SYNTVINGFCKEGLIKEAQRVLSEMIADGVAPCVITYHTLVGGYAS-----REMFAEARE 739

Query: 184 YLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK 233
            +  M+ + ++P   TY  V +++ RA++ ++AR  L  +       DEK
Sbjct: 740 VVGYMIQRKLKPMELTYRRVVDSYCRAKRYEDARDFLAVVAEADTNSDEK 789



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 73/146 (50%), Gaps = 6/146 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQG-KEALRVFMRMLAS 151
           +  ALS++G    AL+LF +++ +G  P  V +  V++ Y   G+     + +   M A+
Sbjct: 189 VLHALSREGRYERALRLFDELRREGVAPTRVTYNVVLDVYGRMGRSWPRVVALLADMRAA 248

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           GV P+ +T + +I     AA G   ++ +A  +  ++  +G  P   TY A+ + F +A 
Sbjct: 249 GVEPDGFTASTVI-----AAAGRDGLVDEAVAFFEDLKARGHAPCVVTYNALLQVFGKAG 303

Query: 212 KVDEARGLLQQMKAKGFVPDEKAVKE 237
              EA  +L++M+  G  PD     E
Sbjct: 304 NYTEALRVLREMEDAGCKPDAVTYNE 329



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 81/201 (40%), Gaps = 31/201 (15%)

Query: 57  YDPFKKVVDEEPTDP------RNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTH------ 104
           +D    ++DE P  P      R    + H +  EG    A+++FD L ++G+        
Sbjct: 163 HDAVCALLDEMPLPPGARLDVRAYTTVLHALSREGRYERALRLFDELRREGVAPTRVTYN 222

Query: 105 --------------EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
                           + L A ++  G  PD    + VI A    G   EA+  F  + A
Sbjct: 223 VVLDVYGRMGRSWPRVVALLADMRAAGVEPDGFTASTVIAAAGRDGLVDEAVAFFEDLKA 282

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
            G AP   TY  L++       G A    +A + L EM   G +P+A TY  +  ++ RA
Sbjct: 283 RGHAPCVVTYNALLQVF-----GKAGNYTEALRVLREMEDAGCKPDAVTYNELAGSYARA 337

Query: 211 QKVDEARGLLQQMKAKGFVPD 231
               EA   +  M  KG +P+
Sbjct: 338 GFYQEAAKCIDTMIGKGLLPN 358



 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 60/159 (37%), Gaps = 8/159 (5%)

Query: 77  IFHKMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M+  G    TN    +   L K       L++  ++   G  P+ V    ++    
Sbjct: 381 LFDRMKKNGFIPYTNTYNLVLGMLGKKSRFAAMLEMLGEMSRSGCTPNRVTWNTLLAVCG 440

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G      RV   M +  V     TY  LI      A G      +A K   EM   G 
Sbjct: 441 KRGMESYVTRVLEGMKSCKVELCRDTYNTLI-----CAYGRCGSRANAFKMYDEMTAAGF 495

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
            P   TY A+     R      AR ++ +MK++GF P++
Sbjct: 496 APCLTTYNALLNVLSRQGDWTAARSIVSKMKSEGFKPND 534



 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 8/131 (6%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +M   G   +AV   ++  + ++ G   EA +    +  KG +P+   +  ++ AY 
Sbjct: 311 VLREMEDAGCKPDAVTYNELAGSYARAGFYQEAAKCIDTMIGKGLLPNTFTYNTIMTAYG 370

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
           +AG+  EAL +F RM  +G  P   TY  L+ G+       A +L    + L EM   G 
Sbjct: 371 NAGKVDEALALFDRMKKNGFIPYTNTYN-LVLGMLGKKSRFAAML----EMLGEMSRSGC 425

Query: 194 RPNAGTYTAVF 204
            PN  T+  + 
Sbjct: 426 TPNRVTWNTLL 436


>gi|242093812|ref|XP_002437396.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
 gi|241915619|gb|EER88763.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
          Length = 786

 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/158 (37%), Positives = 78/158 (49%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNN---AVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +MR  G+  +   A  +  A  +DGL  EA+  F  +K +GH P VV + A+++ + 
Sbjct: 231 LLDEMRAAGVEPDDFTASTVIAACCRDGLVDEAVAFFEDLKARGHTPCVVTYNALLQVFG 290

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG   EALRV   M   G  P+A TY  L     A     A    +A K L  M  KG+
Sbjct: 291 KAGNYTEALRVLKEMEQDGCQPDAVTYNEL-----AGTYARAGFYEEAAKCLDTMTSKGL 345

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            PNA TY  V  A+    KVDEA  L  QMK  G VP+
Sbjct: 346 LPNAFTYNTVMTAYGNIGKVDEALALFDQMKKSGCVPN 383



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 81/153 (52%), Gaps = 8/153 (5%)

Query: 74  LQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           + EIF  ++  GL+ + +    + D  +K   + EA ++  Q+K     PDVV++  VI 
Sbjct: 613 VTEIFDSIKQSGLSPDLITYNSLMDMYAKCSESWEAEKILNQLKSSQVKPDVVSYNTVIN 672

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
            +   G  KEA R+   M+A G+AP   TY  L+ G A+      ++  +A++ +  M+ 
Sbjct: 673 GFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYAS-----LEMFSEAREVINYMIQ 727

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
             ++P   TY  V +++ +A++ +EAR  L ++
Sbjct: 728 HNLKPMELTYRRVVDSYCKAKRFEEARSFLSEV 760



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 77/162 (47%), Gaps = 8/162 (4%)

Query: 74  LQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           +++ F +++  G   + V    M    +K+G+  +  ++F  IK  G  PD++ + ++++
Sbjct: 578 IEKAFQEVKARGYNPDLVIFNSMLSMYAKNGMYSKVTEIFDSIKQSGLSPDLITYNSLMD 637

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
            YA   +  EA ++  ++ +S V P+  +Y  +I G          ++ +AQ+ L EM+ 
Sbjct: 638 MYAKCSESWEAEKILNQLKSSQVKPDVVSYNTVINGFCKQG-----LIKEAQRILSEMIA 692

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
            GM P   TY  +   +   +   EAR ++  M      P E
Sbjct: 693 DGMAPCVVTYHTLVGGYASLEMFSEAREVINYMIQHNLKPME 734



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 74/146 (50%), Gaps = 6/146 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFM-RMLAS 151
           +  ALS+ G    A++LFA+++ +G  P +V +  V++ Y   G+    +   +  M A+
Sbjct: 179 VLHALSRAGRYERAVELFAELRRQGVAPTLVTYNVVLDVYGRMGRSWPRIVALLDEMRAA 238

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           GV P+ +T + +I   A   DG   ++ +A  +  ++  +G  P   TY A+ + F +A 
Sbjct: 239 GVEPDDFTASTVIA--ACCRDG---LVDEAVAFFEDLKARGHTPCVVTYNALLQVFGKAG 293

Query: 212 KVDEARGLLQQMKAKGFVPDEKAVKE 237
              EA  +L++M+  G  PD     E
Sbjct: 294 NYTEALRVLKEMEQDGCQPDAVTYNE 319



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 67/140 (47%), Gaps = 13/140 (9%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMP-----DVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           AL ++G  H+A+     + D+  +P     DV A+T V+ A + AG+ + A+ +F  +  
Sbjct: 146 ALGREG-QHDAV---CALLDEMPLPPGSRLDVRAYTTVLHALSRAGRYERAVELFAELRR 201

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
            GVAP   TY V++           +I+      L EM   G+ P+  T + V  A  R 
Sbjct: 202 QGVAPTLVTYNVVLDVYGRMGRSWPRIVA----LLDEMRAAGVEPDDFTASTVIAACCRD 257

Query: 211 QKVDEARGLLQQMKAKGFVP 230
             VDEA    + +KA+G  P
Sbjct: 258 GLVDEAVAFFEDLKARGHTP 277



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 72/160 (45%), Gaps = 20/160 (12%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +M  +G   +AV   ++    ++ G   EA +    +  KG +P+   +  V+ AY 
Sbjct: 301 VLKEMEQDGCQPDAVTYNELAGTYARAGFYEEAAKCLDTMTSKGLLPNAFTYNTVMTAYG 360

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKY--LMEMVGK 191
           + G+  EAL +F +M  SG  PN  TY  ++            +LG   ++  ++EM+G+
Sbjct: 361 NIGKVDEALALFDQMKKSGCVPNVNTYNFIL-----------GMLGKKSRFTVMLEMLGE 409

Query: 192 ----GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
               G  PN  T+  +     +    D    +L+ MK+ G
Sbjct: 410 MSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMKSCG 449



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/192 (22%), Positives = 73/192 (38%), Gaps = 33/192 (17%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +    M ++GL  NA     +  A    G   EAL LF Q+K  G +P+V  +  ++   
Sbjct: 335 KCLDTMTSKGLLPNAFTYNTVMTAYGNIGKVDEALALFDQMKKSGCVPNVNTYNFILGML 394

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLI----------------KGLAA------- 169
               +    L +   M  SG  PN  T+  ++                +G+ +       
Sbjct: 395 GKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMKSCGVELSR 454

Query: 170 -------AADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
                  AA G      +A K   EM   G  P   TY A+     R      A+ ++ +
Sbjct: 455 DTYNTLIAAYGRCGSRTNAFKMYNEMTSAGFAPCLTTYNALLNVLSRQGDWSTAQSIVSK 514

Query: 223 MKAKGFVPDEKA 234
           M+ KGF P++++
Sbjct: 515 MRTKGFKPNDQS 526



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/143 (23%), Positives = 60/143 (41%), Gaps = 8/143 (5%)

Query: 74  LQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           + E+  +M   G T N V    M     K G+     ++   +K  G       +  +I 
Sbjct: 403 MLEMLGEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLEGMKSCGVELSRDTYNTLIA 462

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
           AY   G    A +++  M ++G AP   TY  L+  L+   D +      AQ  + +M  
Sbjct: 463 AYGRCGSRTNAFKMYNEMTSAGFAPCLTTYNALLNVLSRQGDWST-----AQSIVSKMRT 517

Query: 191 KGMRPNAGTYTAVFEAFVRAQKV 213
           KG +PN  +Y+ + + + +   +
Sbjct: 518 KGFKPNDQSYSLLLQCYAKGGNI 540


>gi|125551633|gb|EAY97342.1| hypothetical protein OsI_19265 [Oryza sativa Indica Group]
          Length = 793

 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 80/158 (50%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNN---AVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +MR  G+  +   A  +  A  +DGL  +A+  F  +K +GH+P VV + A+++ + 
Sbjct: 238 LLEEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFG 297

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG   EALRV   M  SG  P+A TY  L     A     A    +A K L  M  KG+
Sbjct: 298 KAGNYTEALRVLKEMEDSGCQPDAVTYNEL-----AGTYARAGFFEEAAKCLDTMTSKGL 352

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            PN  TY  V  A+    +VDEA  L  +MK  G+VP+
Sbjct: 353 LPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPN 390



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 80/151 (52%), Gaps = 8/151 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F  ++  GL+ + +    + D  +K   + EA ++  Q+K     PDVV++  VI  +
Sbjct: 622 EMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGF 681

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G  KEA R+   M+A G+AP   TY  L+ G A+      ++  +A++ +  M+   
Sbjct: 682 CKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYAS-----LEMFNEAREVVNYMIHHN 736

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           ++P   TY  V +++ +A++ DEAR  L ++
Sbjct: 737 LKPMELTYRRVVDSYCKAKRYDEAREFLSEI 767



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 81/162 (50%), Gaps = 8/162 (4%)

Query: 74  LQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           +++ F +++ +G   + V    M    +K+GL  +A ++F  IK  G  PD++ + ++++
Sbjct: 585 VEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMD 644

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
            YA + +  EA ++  ++ +S V P+  +Y  +I G          ++ +AQ+ L EM+ 
Sbjct: 645 MYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQG-----LIKEAQRILSEMIA 699

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
            GM P   TY  +   +   +  +EAR ++  M      P E
Sbjct: 700 DGMAPCVVTYHTLVGGYASLEMFNEAREVVNYMIHHNLKPME 741



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 74/146 (50%), Gaps = 6/146 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFM-RMLAS 151
           +  ALS+ G    ALQLFA+++ +G +P +V +  V++ Y   G+    +   +  M A+
Sbjct: 186 VLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEMRAA 245

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           GV P+ +T + +I     AA G   +L  A  +  ++  +G  P   TY A+ + F +A 
Sbjct: 246 GVEPDDFTASTVI-----AACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAG 300

Query: 212 KVDEARGLLQQMKAKGFVPDEKAVKE 237
              EA  +L++M+  G  PD     E
Sbjct: 301 NYTEALRVLKEMEDSGCQPDAVTYNE 326



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 67/154 (43%), Gaps = 8/154 (5%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +M   G   +AV   ++    ++ G   EA +    +  KG +P+   +  V+ AYA
Sbjct: 308 VLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYA 367

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
           + G+  EAL +F RM  +G  PN  TY ++   L   +   A +     + L EM   G 
Sbjct: 368 NVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAML-----EMLEEMSRSGC 422

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
            PN  T+  +     +    D    +L  MK+ G
Sbjct: 423 TPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCG 456



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 4/114 (3%)

Query: 117 GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK 176
           G   DV A+T V+ A + AG+ + AL++F  +   GV P   TY V++           +
Sbjct: 175 GSRLDVRAYTTVLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPR 234

Query: 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           I+      L EM   G+ P+  T + V  A  R   +D+A    + +KA+G VP
Sbjct: 235 IVA----LLEEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVP 284



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 58/137 (42%), Gaps = 8/137 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+  +M   G T N V    M     K G+     ++   +K  G       +  +I AY
Sbjct: 412 EMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAY 471

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G    A +++  M++SG  P   TY  L+  L+   D +      AQ  + +M+  G
Sbjct: 472 GRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWST-----AQSIVSKMLKNG 526

Query: 193 MRPNAGTYTAVFEAFVR 209
            +PN  +Y+ + + + +
Sbjct: 527 FKPNDQSYSLLLQCYAK 543



 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 62/161 (38%), Gaps = 8/161 (4%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M+  G   N      +F  L K       L++  ++   G  P+ V    ++    
Sbjct: 378 LFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCG 437

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G      RV   M + GV  +  TY  LI     +A G       A K   EM+  G 
Sbjct: 438 KRGMEDYVTRVLNGMKSCGVELSRDTYNTLI-----SAYGRCGSRTYAFKMYDEMISSGF 492

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
            P   TY A+     R      A+ ++ +M   GF P++++
Sbjct: 493 TPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQS 533



 Score = 43.5 bits (101), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 29/139 (20%), Positives = 64/139 (46%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +  A  + G    A +++ ++   G  P +  + A++   +  G    A  +  +ML +G
Sbjct: 467 LISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNG 526

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN  +Y++L++  A    GNA  +   +K   E+    + P+      +  A  + ++
Sbjct: 527 FKPNDQSYSLLLQCYAKG--GNAAGIESIEK---EVYVGTIFPSWVILRTLVIANFKCRR 581

Query: 213 VDEARGLLQQMKAKGFVPD 231
           ++      Q++KA+G+ PD
Sbjct: 582 LEGVEKAFQEVKAQGYKPD 600


>gi|115462947|ref|NP_001055073.1| Os05g0275000 [Oryza sativa Japonica Group]
 gi|50878350|gb|AAT85125.1| unknown protein, contains pentatricopeptide (PPR) repeat, PF01535
           [Oryza sativa Japonica Group]
 gi|113578624|dbj|BAF16987.1| Os05g0275000 [Oryza sativa Japonica Group]
 gi|215695094|dbj|BAG90285.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 793

 Score = 97.8 bits (242), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 80/158 (50%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNN---AVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +MR  G+  +   A  +  A  +DGL  +A+  F  +K +GH+P VV + A+++ + 
Sbjct: 238 LLEEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFG 297

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG   EALRV   M  SG  P+A TY  L     A     A    +A K L  M  KG+
Sbjct: 298 KAGNYTEALRVLKEMEDSGCQPDAVTYNEL-----AGTYARAGFFEEAAKCLDTMTSKGL 352

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            PN  TY  V  A+    +VDEA  L  +MK  G+VP+
Sbjct: 353 LPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPN 390



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 80/151 (52%), Gaps = 8/151 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F  ++  GL+ + +    + D  +K   + EA ++  Q+K     PDVV++  VI  +
Sbjct: 622 EMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGF 681

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G  KEA R+   M+A G+AP   TY  L+ G A+      ++  +A++ +  M+   
Sbjct: 682 CKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYAS-----LEMFNEAREVVNYMIHHN 736

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           ++P   TY  V +++ +A++ DEAR  L ++
Sbjct: 737 LKPMELTYRRVVDSYCKAKRYDEAREFLSEI 767



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 81/162 (50%), Gaps = 8/162 (4%)

Query: 74  LQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           +++ F +++ +G   + V    M    +K+GL  +A ++F  IK  G  PD++ + ++++
Sbjct: 585 VEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMD 644

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
            YA + +  EA ++  ++ +S V P+  +Y  +I G          ++ +AQ+ L EM+ 
Sbjct: 645 MYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQG-----LIKEAQRILSEMIA 699

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
            GM P   TY  +   +   +  +EAR ++  M      P E
Sbjct: 700 DGMAPCVVTYHTLVGGYASLEMFNEAREVVNYMIHHNLKPME 741



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 74/146 (50%), Gaps = 6/146 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFM-RMLAS 151
           +  ALS+ G    ALQLFA+++ +G +P +V +  V++ Y   G+    +   +  M A+
Sbjct: 186 VLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEMRAA 245

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           GV P+ +T + +I     AA G   +L  A  +  ++  +G  P   TY A+ + F +A 
Sbjct: 246 GVEPDDFTASTVI-----AACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAG 300

Query: 212 KVDEARGLLQQMKAKGFVPDEKAVKE 237
              EA  +L++M+  G  PD     E
Sbjct: 301 NYTEALRVLKEMEDSGCQPDAVTYNE 326



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 67/154 (43%), Gaps = 8/154 (5%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +M   G   +AV   ++    ++ G   EA +    +  KG +P+   +  V+ AYA
Sbjct: 308 VLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYA 367

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
           + G+  EAL +F RM  +G  PN  TY ++   L   +   A +     + L EM   G 
Sbjct: 368 NVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAML-----EMLEEMSRSGC 422

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
            PN  T+  +     +    D    +L  MK+ G
Sbjct: 423 TPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCG 456



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 4/114 (3%)

Query: 117 GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK 176
           G   DV A+T V+ A + AG+ + AL++F  +   GV P   TY V++           +
Sbjct: 175 GSRLDVRAYTTVLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPR 234

Query: 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           I+      L EM   G+ P+  T + V  A  R   +D+A    + +KA+G VP
Sbjct: 235 IVA----LLEEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVP 284



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 58/137 (42%), Gaps = 8/137 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+  +M   G T N V    M     K G+     ++   +K  G       +  +I AY
Sbjct: 412 EMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAY 471

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G    A +++  M++SG  P   TY  L+  L+   D +      AQ  + +M+  G
Sbjct: 472 GRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWST-----AQSIVSKMLKNG 526

Query: 193 MRPNAGTYTAVFEAFVR 209
            +PN  +Y+ + + + +
Sbjct: 527 FKPNDQSYSLLLQCYAK 543



 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 62/161 (38%), Gaps = 8/161 (4%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M+  G   N      +F  L K       L++  ++   G  P+ V    ++    
Sbjct: 378 LFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCG 437

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G      RV   M + GV  +  TY  LI     +A G       A K   EM+  G 
Sbjct: 438 KRGMEDYVTRVLNGMKSCGVELSRDTYNTLI-----SAYGRCGSRTYAFKMYDEMISSGF 492

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
            P   TY A+     R      A+ ++ +M   GF P++++
Sbjct: 493 TPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQS 533



 Score = 43.5 bits (101), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 29/139 (20%), Positives = 64/139 (46%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +  A  + G    A +++ ++   G  P +  + A++   +  G    A  +  +ML +G
Sbjct: 467 LISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNG 526

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN  +Y++L++  A    GNA  +   +K   E+    + P+      +  A  + ++
Sbjct: 527 FKPNDQSYSLLLQCYAKG--GNAAGIESIEK---EVYVGTIFPSWVILRTLVIANFKCRR 581

Query: 213 VDEARGLLQQMKAKGFVPD 231
           ++      Q++KA+G+ PD
Sbjct: 582 LEGVEKAFQEVKAQGYKPD 600


>gi|222630937|gb|EEE63069.1| hypothetical protein OsJ_17877 [Oryza sativa Japonica Group]
          Length = 702

 Score = 97.4 bits (241), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 56/158 (35%), Positives = 80/158 (50%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNN---AVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +MR  G+  +   A  +  A  +DGL  +A+  F  +K +GH+P VV + A+++ + 
Sbjct: 147 LLEEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFG 206

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG   EALRV   M  SG  P+A TY  L     A     A    +A K L  M  KG+
Sbjct: 207 KAGNYTEALRVLKEMEDSGCQPDAVTYNEL-----AGTYARAGFFEEAAKCLDTMTSKGL 261

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            PN  TY  V  A+    +VDEA  L  +MK  G+VP+
Sbjct: 262 LPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPN 299



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 80/151 (52%), Gaps = 8/151 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F  ++  GL+ + +    + D  +K   + EA ++  Q+K     PDVV++  VI  +
Sbjct: 531 EMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGF 590

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G  KEA R+   M+A G+AP   TY  L+ G A+      ++  +A++ +  M+   
Sbjct: 591 CKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYAS-----LEMFNEAREVVNYMIHHN 645

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           ++P   TY  V +++ +A++ DEAR  L ++
Sbjct: 646 LKPMELTYRRVVDSYCKAKRYDEAREFLSEI 676



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 81/162 (50%), Gaps = 8/162 (4%)

Query: 74  LQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           +++ F +++ +G   + V    M    +K+GL  +A ++F  IK  G  PD++ + ++++
Sbjct: 494 VEKAFQEVKAQGYKPDLVIFNSMLAMYAKNGLYSKATEMFDSIKQSGLSPDLITYNSLMD 553

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
            YA + +  EA ++  ++ +S V P+  +Y  +I G          ++ +AQ+ L EM+ 
Sbjct: 554 MYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQG-----LIKEAQRILSEMIA 608

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
            GM P   TY  +   +   +  +EAR ++  M      P E
Sbjct: 609 DGMAPCVVTYHTLVGGYASLEMFNEAREVVNYMIHHNLKPME 650



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 74/146 (50%), Gaps = 6/146 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFM-RMLAS 151
           +  ALS+ G    ALQLFA+++ +G +P +V +  V++ Y   G+    +   +  M A+
Sbjct: 95  VLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPRIVALLEEMRAA 154

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           GV P+ +T + +I     AA G   +L  A  +  ++  +G  P   TY A+ + F +A 
Sbjct: 155 GVEPDDFTASTVI-----AACGRDGLLDQAVAFFEDLKARGHVPCVVTYNALLQVFGKAG 209

Query: 212 KVDEARGLLQQMKAKGFVPDEKAVKE 237
              EA  +L++M+  G  PD     E
Sbjct: 210 NYTEALRVLKEMEDSGCQPDAVTYNE 235



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 67/154 (43%), Gaps = 8/154 (5%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +M   G   +AV   ++    ++ G   EA +    +  KG +P+   +  V+ AYA
Sbjct: 217 VLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKCLDTMTSKGLLPNTFTYNTVMTAYA 276

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
           + G+  EAL +F RM  +G  PN  TY ++   L   +   A +     + L EM   G 
Sbjct: 277 NVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAML-----EMLEEMSRSGC 331

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
            PN  T+  +     +    D    +L  MK+ G
Sbjct: 332 TPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCG 365



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 4/114 (3%)

Query: 117 GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK 176
           G   DV A+T V+ A + AG+ + AL++F  +   GV P   TY V++           +
Sbjct: 84  GSRLDVRAYTTVLHALSRAGRYERALQLFAELRRQGVVPTIVTYNVVLDVYGRMGRSWPR 143

Query: 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           I+      L EM   G+ P+  T + V  A  R   +D+A    + +KA+G VP
Sbjct: 144 IVA----LLEEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVP 193



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 58/137 (42%), Gaps = 8/137 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+  +M   G T N V    M     K G+     ++   +K  G       +  +I AY
Sbjct: 321 EMLEEMSRSGCTPNRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTYNTLISAY 380

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G    A +++  M++SG  P   TY  L+  L+   D +      AQ  + +M+  G
Sbjct: 381 GRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWST-----AQSIVSKMLKNG 435

Query: 193 MRPNAGTYTAVFEAFVR 209
            +PN  +Y+ + + + +
Sbjct: 436 FKPNDQSYSLLLQCYAK 452



 Score = 46.2 bits (108), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 62/161 (38%), Gaps = 8/161 (4%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M+  G   N      +F  L K       L++  ++   G  P+ V    ++    
Sbjct: 287 LFDRMKKNGYVPNVNTYNLIFGMLGKKSRFTAMLEMLEEMSRSGCTPNRVTWNTMLAVCG 346

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G      RV   M + GV  +  TY  LI     +A G       A K   EM+  G 
Sbjct: 347 KRGMEDYVTRVLNGMKSCGVELSRDTYNTLI-----SAYGRCGSRTYAFKMYDEMISSGF 401

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
            P   TY A+     R      A+ ++ +M   GF P++++
Sbjct: 402 TPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNGFKPNDQS 442



 Score = 43.1 bits (100), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 29/139 (20%), Positives = 64/139 (46%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +  A  + G    A +++ ++   G  P +  + A++   +  G    A  +  +ML +G
Sbjct: 376 LISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKMLKNG 435

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN  +Y++L++  A    GNA  +   +K   E+    + P+      +  A  + ++
Sbjct: 436 FKPNDQSYSLLLQCYAKG--GNAAGIESIEK---EVYVGTIFPSWVILRTLVIANFKCRR 490

Query: 213 VDEARGLLQQMKAKGFVPD 231
           ++      Q++KA+G+ PD
Sbjct: 491 LEGVEKAFQEVKAQGYKPD 509


>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Glycine max]
          Length = 742

 Score = 96.7 bits (239), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 85/159 (53%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F +M+ + +  + V    M   L + G   EA +LF+++  KG  PD V +TA+I+ Y
Sbjct: 378 KLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGY 437

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             AG+ KEA  +  +M+  G+ PN  TY  L+ GL    + +      A + L EM  KG
Sbjct: 438 CKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDI-----ANELLHEMSEKG 492

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           ++PN  TY A+     +   +++A  L+++M   GF PD
Sbjct: 493 LQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPD 531



 Score = 83.2 bits (204), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 71/139 (51%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +     K G      +LF ++K K  +PD V +T++I     AG+  EA ++F  ML+ G
Sbjct: 363 LISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKG 422

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+  TY  LI G   A +     + +A     +MV KG+ PN  TYTA+ +   +  +
Sbjct: 423 LKPDEVTYTALIDGYCKAGE-----MKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGE 477

Query: 213 VDEARGLLQQMKAKGFVPD 231
           VD A  LL +M  KG  P+
Sbjct: 478 VDIANELLHEMSEKGLQPN 496



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 79/160 (49%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            E+ H+M  +GL  N      + + L K G   +A++L  ++   G  PD + +T +++A
Sbjct: 482 NELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDA 541

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y   G+  +A  +   ML  G+ P   T+ VL+ G   +      +L D ++ +  M+ K
Sbjct: 542 YCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSG-----MLEDGERLIKWMLDK 596

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G+ PNA T+ ++ + +     +     + + M A+G VPD
Sbjct: 597 GIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPD 636



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 81/170 (47%), Gaps = 9/170 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            E+   M  +GL    V    + +     G+  +  +L   + DKG MP+     ++++ 
Sbjct: 552 HELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQ 611

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y      +  + ++  M A GV P+  TY +LIKG   A +     + +A     EMV K
Sbjct: 612 YCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARN-----MKEAWFLHKEMVEK 666

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           G    A +Y ++ + F + +K +EAR L ++M+  GF+  EK + +  +D
Sbjct: 667 GFSLTAASYNSLIKGFYKRKKFEEARKLFEEMRTHGFIA-EKEIYDIFVD 715



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 84/198 (42%), Gaps = 34/198 (17%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +    G+  N V    +   L + G   EA  L  Q++ +G++PDVV+++ +++ Y 
Sbjct: 239 VFREYSEVGVCWNTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSVIVDGYC 298

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD-----------GNAKILGDAQ 182
              Q  + L++   +   G+ PN YTY  +I  L                 N +I  D  
Sbjct: 299 QVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNV 358

Query: 183 KYLM-------------------EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
            Y                     EM  K + P+  TYT++     +A KV EAR L  +M
Sbjct: 359 VYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEM 418

Query: 224 KAKGFVPDEKAVKEALID 241
            +KG  PDE     ALID
Sbjct: 419 LSKGLKPDE-VTYTALID 435



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 74/156 (47%), Gaps = 8/156 (5%)

Query: 79  HKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASA 135
           ++M  +GLT N V    + D L K G    A +L  ++ +KG  P+V  + A+I      
Sbjct: 451 NQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKV 510

Query: 136 GQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP 195
           G  ++A+++   M  +G  P+  TY  ++       +     +  A + L  M+ KG++P
Sbjct: 511 GNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGE-----MAKAHELLRIMLDKGLQP 565

Query: 196 NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              T+  +   F  +  +++   L++ M  KG +P+
Sbjct: 566 TIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPN 601


>gi|312190399|gb|ADQ43199.1| unknown [Eutrema parvulum]
          Length = 1128

 Score = 96.7 bits (239), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 89/164 (54%), Gaps = 9/164 (5%)

Query: 71  PRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P+ L E + +M+  GL  N V    + DA  K+ +  +A++ +  ++  GH+P+   +T+
Sbjct: 220 PKGL-EFYREMKQSGLKPNVVSYSTLVDAFCKEDMMQQAIKFYVDMRRVGHVPNEFTYTS 278

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           +++A    G   +A R+   ML  GV  N  TY  LI GL      +A+ + +A+K   +
Sbjct: 279 LVDANCKIGNLSDAFRLANEMLEVGVEWNVVTYTALIDGLC-----DAERMKEAEKLFGK 333

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           MV  G+ PN  +Y A+   FV+A+ +D A  LL ++K +G  PD
Sbjct: 334 MVTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIQPD 377



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 79/188 (42%), Gaps = 33/188 (17%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M+  GL  + V    M D   K G   + +  F ++K     PDV+ + ++I  + 
Sbjct: 155 LFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNSLINCFC 214

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA------------------------- 168
            +G+  + L  +  M  SG+ PN  +Y+ L+                             
Sbjct: 215 KSGKLPKGLEFYREMKQSGLKPNVVSYSTLVDAFCKEDMMQQAIKFYVDMRRVGHVPNEF 274

Query: 169 ---AAADGNAKI--LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
              +  D N KI  L DA +   EM+  G+  N  TYTA+ +    A+++ EA  L  +M
Sbjct: 275 TYTSLVDANCKIGNLSDAFRLANEMLEVGVEWNVVTYTALIDGLCDAERMKEAEKLFGKM 334

Query: 224 KAKGFVPD 231
              G +P+
Sbjct: 335 VTAGVIPN 342



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 66/140 (47%), Gaps = 5/140 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M D + K+G    A  LF ++K +G +PD V + ++I+ Y   G+  + +  F  M +  
Sbjct: 139 MIDCMWKEGDIEAARGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMS 198

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  TY  LI     +       L    ++  EM   G++PN  +Y+ + +AF +   
Sbjct: 199 CEPDVITYNSLINCFCKSGK-----LPKGLEFYREMKQSGLKPNVVSYSTLVDAFCKEDM 253

Query: 213 VDEARGLLQQMKAKGFVPDE 232
           + +A      M+  G VP+E
Sbjct: 254 MQQAIKFYVDMRRVGHVPNE 273



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 20/173 (11%)

Query: 68  PTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQI-KDKGHMPDVVAHT 126
           PT+  +L E   ++  E        + D L K+ L  +A+  F ++  D G  P+   +T
Sbjct: 429 PTEGLHLLEEMQELDHEVTVVTFCVLIDGLCKNKLVSKAIDYFGRMSNDFGLQPNAAVYT 488

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
           A+I+      Q K A  +F +M   G+ P+   Y  L+       DGN K     Q  ++
Sbjct: 489 AMIDGLCKENQVKAATTLFEQMAQEGLVPDRTAYTSLM-------DGNLK-----QGNML 536

Query: 187 E-------MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           E       M   GM+ +   YT++   F +  ++ +AR  L++M  +  +PDE
Sbjct: 537 EALALRDKMAEIGMKLDLLAYTSLVWGFSQCNQLQKARSFLEEMIGEEILPDE 589



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 6/136 (4%)

Query: 112 QIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA 171
           ++++ G   + + +T +++AY  +G   E L +   M          T+ VLI GL    
Sbjct: 403 EMQENGIKANTLIYTTLMDAYFKSGNPTEGLHLLEEMQELDHEVTVVTFCVLIDGLC--- 459

Query: 172 DGNAKILGDAQKYLMEMVGK-GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
               K++  A  Y   M    G++PNA  YTA+ +   +  +V  A  L +QM  +G VP
Sbjct: 460 --KNKLVSKAIDYFGRMSNDFGLQPNAAVYTAMIDGLCKENQVKAATTLFEQMAQEGLVP 517

Query: 231 DEKAVKEALIDKRGQG 246
           D  A    +     QG
Sbjct: 518 DRTAYTSLMDGNLKQG 533



 Score = 53.5 bits (127), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 9/148 (6%)

Query: 76  EIFHKMRTE-GLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + F +M  + GL  NA     M D L K+     A  LF Q+  +G +PD  A+T++++ 
Sbjct: 469 DYFGRMSNDFGLQPNAAVYTAMIDGLCKENQVKAATTLFEQMAQEGLVPDRTAYTSLMDG 528

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G   EAL +  +M   G+  +   Y  L+ G +         L  A+ +L EM+G+
Sbjct: 529 NLKQGNMLEALALRDKMAEIGMKLDLLAYTSLVWGFSQCNQ-----LQKARSFLEEMIGE 583

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGL 219
            + P+      V +       +DEA GL
Sbjct: 584 EILPDEVLCIGVLKKHYELGCIDEAVGL 611



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 10/129 (7%)

Query: 119 MPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA--AAADGNAK 176
           +P      A+       G  +EA + F +M    V P   +   L+   A     DG   
Sbjct: 60  VPGFGVFDALFSVLIDLGMLEEATQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKTDG--- 116

Query: 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK 236
                +++  +M+G G +P   TY  + +   +   ++ ARGL ++MK +G +PD     
Sbjct: 117 ----VKRFFKDMIGAGSKPTVFTYNIMIDCMWKEGDIEAARGLFEEMKFRGLIPD-TVTY 171

Query: 237 EALIDKRGQ 245
            ++ID  G+
Sbjct: 172 NSMIDGYGK 180


>gi|297737176|emb|CBI26377.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/139 (35%), Positives = 80/139 (57%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D+L KDG+T EAL +F+++   G +PDVV ++++++     G+ KEAL  F  M   G
Sbjct: 152 IIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRG 211

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           ++ + YTY  LI GL+ A      +  +   +L  MV +G  P+A T+T + +   +  K
Sbjct: 212 ISADVYTYNSLIHGLSRAG-----LWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGK 266

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V EA+ +L+ M  KG  PD
Sbjct: 267 VGEAQQILELMHHKGKEPD 285



 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 93/173 (53%), Gaps = 11/173 (6%)

Query: 72  RNLQEIFHKMRTEG----LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           R  Q++F +M+T G    L+   V + D L K+G   EA+ LF  IK   H P++   + 
Sbjct: 373 RTAQKLFVEMQTCGQFLKLSTYCV-LLDGLCKNGHLEEAIDLFQSIKKTEHKPNIEVFSI 431

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           +++    AG+ +EA + F  +  +G+ P+   Y +LI GL      N  +L +A K L +
Sbjct: 432 LLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLC-----NKGMLSEAVKLLWQ 486

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
           M  KG  P++ T+  + +  ++  ++ EA  LL++M+ + F PDE AV   L+
Sbjct: 487 MEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPDE-AVTSMLL 538



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 70/158 (44%), Gaps = 8/158 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E F +M   G++ +      +   LS+ GL  E       + D+G  PD    T +I+  
Sbjct: 202 EFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGL 261

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+  EA ++   M   G  P+  TY  L+ GL          L DA K    +  +G
Sbjct: 262 CKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQ-----LEDATKLFESLADRG 316

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           ++ N  +Y  +   + + QK+DEA  L ++M+ KG  P
Sbjct: 317 IKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKP 354



 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 68/135 (50%), Gaps = 5/135 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K+G   EA Q+   +  KG  PD++ +  ++      GQ ++A ++F  +   G
Sbjct: 257 LIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRG 316

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +  N ++Y +LI G       + KI  +A +   EM  KG++P+  TY  +  A  ++ +
Sbjct: 317 IKLNVFSYNILINGYCK----DQKI-DEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGR 371

Query: 213 VDEARGLLQQMKAKG 227
           V  A+ L  +M+  G
Sbjct: 372 VRTAQKLFVEMQTCG 386



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 60/147 (40%), Gaps = 33/147 (22%)

Query: 116 KGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAA----- 170
           +G  PD V  T +++         +A+++F  M   G+  +A TY +LI GL  A     
Sbjct: 71  RGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTEKGLFGDAKTYGILINGLCKARKTGL 130

Query: 171 -------ADGNAKILGDAQKYLM-------------------EMVGKGMRPNAGTYTAVF 204
                    GN K  GD   Y M                   EM+G G+ P+   Y+++ 
Sbjct: 131 AIKLHEKMKGNCK--GDVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLM 188

Query: 205 EAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +   R  ++ EA    ++M+ +G   D
Sbjct: 189 DGLCRFGRLKEALEFFKEMEGRGISAD 215


>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
 gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
          Length = 688

 Score = 95.5 bits (236), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 86/183 (46%), Gaps = 24/183 (13%)

Query: 68  PTDPRNLQEIFHKMRTEGLTNNAVKMF-------------------DALSKDGLTHEALQ 108
           P D      I H +   G  N A ++F                   D+L KD L ++A  
Sbjct: 265 PPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAAD 324

Query: 109 LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
             +++ D+G  PDVV +T ++      GQ  EA+R+F +M   G  P+   Y  +I  L 
Sbjct: 325 FLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLC 384

Query: 169 AAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
                  +++ DA ++L EMV +G+ PNA TY+ +   F    ++DEA  L ++M  +  
Sbjct: 385 K-----DRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNV 439

Query: 229 VPD 231
           +P+
Sbjct: 440 MPN 442



 Score = 94.0 bits (232), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 82/159 (51%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
            +F KM   G   N V    + D+L KD L ++A+   +++  +G  PD + + +++   
Sbjct: 219 HVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGL 278

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              GQ  EA R+F RM  +G  P+  TY ++I  L        +++ DA  +L EMV +G
Sbjct: 279 CCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYK-----DRLVNDAADFLSEMVDQG 333

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + P+  TYT +        +++EA  L ++M+ KG  PD
Sbjct: 334 IPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPD 372



 Score = 93.2 bits (230), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 93/194 (47%), Gaps = 25/194 (12%)

Query: 58  DPFKKVVDEE-PTDPRNLQEIFHKMRTEGLTNNAVKMF-------------------DAL 97
           D   ++VD+  P D      I H +   G  N A+++F                   D+L
Sbjct: 324 DFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSL 383

Query: 98  SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA 157
            KD L ++A++  +++ D+G  P+ V ++ ++  + + GQ  EA ++F  M+   V PN 
Sbjct: 384 CKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNT 443

Query: 158 YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
            T+++L+ GL         ++ +A+     M  KG+ PN  TY A+   +    K++EAR
Sbjct: 444 LTFSILVDGLCQEG-----MVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEAR 498

Query: 218 GLLQQMKAKGFVPD 231
            + + M  KG  PD
Sbjct: 499 KVFEIMVGKGCAPD 512



 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 74/139 (53%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + +  +G    A++L+ ++   GH PDV+++  +I    ++G    A+ VF +M  +G
Sbjct: 169 LINGVCNEGKIKVAVELYNEMVRSGHEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNG 228

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN  TY  +I  L        +++ DA  +L EMVG+G+ P+A TY ++        +
Sbjct: 229 CKPNVVTYNTIIDSLCK-----DRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQ 283

Query: 213 VDEARGLLQQMKAKGFVPD 231
           ++EA  L ++M+  G  PD
Sbjct: 284 LNEATRLFKRMEQNGCKPD 302



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 72/138 (52%), Gaps = 5/138 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L ++G+  EA  +F  + +KG  P++  + A++  Y    +  EA +VF  M+  G
Sbjct: 449 LVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKG 508

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            AP+ ++Y +LI G       N++ +  A+  L +M  K + PN  TY  + +      +
Sbjct: 509 CAPDLHSYNILINGYC-----NSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGR 563

Query: 213 VDEARGLLQQMKAKGFVP 230
           + +A+ L ++M + G +P
Sbjct: 564 LLDAQELFKKMCSSGMLP 581



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 13/148 (8%)

Query: 109 LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
           L  Q+  K   P+ V +  +++     G+  +A  +F +M +SG+ P   TY++L+ GL 
Sbjct: 535 LLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLC 594

Query: 169 AAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
                    L +A K    M  K + P+   YT + E      K++ A+GL  ++ A G 
Sbjct: 595 KHGH-----LDEALKLFKSMKEKKLEPDIILYTILIEGMFIGGKLEVAKGLFSKLSADGI 649

Query: 229 VPDEKA--------VKEALIDKRGQGFR 248
            P  +         +KE L D+  + FR
Sbjct: 650 QPPGRTYNVMIKGLLKEGLSDEAYELFR 677



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 54/96 (56%), Gaps = 3/96 (3%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           QE+F KM + G+    +    + + L K G   EAL+LF  +K+K   PD++ +T +IE 
Sbjct: 568 QELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKLEPDIILYTILIEG 627

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
               G+ + A  +F ++ A G+ P   TY V+IKGL
Sbjct: 628 MFIGGKLEVAKGLFSKLSADGIQPPGRTYNVMIKGL 663



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/151 (22%), Positives = 67/151 (44%), Gaps = 8/151 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +M  + LT N V    +   L   G   +A +LF ++   G +P ++ ++ ++    
Sbjct: 535 LLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLC 594

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G   EAL++F  M    + P+   Y +LI+G+          L  A+    ++   G+
Sbjct: 595 KHGHLDEALKLFKSMKEKKLEPDIILYTILIEGMFIGGK-----LEVAKGLFSKLSADGI 649

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           +P   TY  + +  ++    DEA  L ++ K
Sbjct: 650 QPPGRTYNVMIKGLLKEGLSDEAYELFRKWK 680


>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
          Length = 1512

 Score = 95.1 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 50/139 (35%), Positives = 81/139 (58%), Gaps = 5/139 (3%)

Query: 93   MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
            + DAL KDG+T EAL +F+++   G +PDVV ++++++     G+ KEAL  F  M   G
Sbjct: 1091 IIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRG 1150

Query: 153  VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            ++ + YTY  LI GL+ A      +  +   +L  MV +G  P+A T+T + +   +  K
Sbjct: 1151 ISADVYTYNSLIHGLSRAG-----LWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGK 1205

Query: 213  VDEARGLLQQMKAKGFVPD 231
            V EA+ +L+ M+ KG  PD
Sbjct: 1206 VGEAQQILELMRHKGKEPD 1224



 Score = 88.6 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 54/173 (31%), Positives = 93/173 (53%), Gaps = 11/173 (6%)

Query: 72   RNLQEIFHKMRTEG----LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
            R  Q++F +M+T G    L+   V + D L K+G   EA+ LF  IK   H P++   + 
Sbjct: 1312 RTAQKLFVEMQTCGQFLKLSTYCV-LLDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVFSI 1370

Query: 128  VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
            +++    AG+ +EA + F  +  +G+ P+   Y +LI GL      N  +L +A K L +
Sbjct: 1371 LLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLC-----NKGMLSEAVKLLWQ 1425

Query: 188  MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
            M  KG  P++ T+  + +  ++  ++ EA  LL++M+ + F PDE AV   L+
Sbjct: 1426 MEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSPDE-AVTSMLL 1477



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 42/158 (26%), Positives = 69/158 (43%), Gaps = 8/158 (5%)

Query: 76   EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
            E F +M   G++ +      +   LS+ GL  E       + D+G  PD    T +I+  
Sbjct: 1141 EFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGL 1200

Query: 133  ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               G+  EA ++   M   G  P+  TY  L+ GL          L DA K    +  +G
Sbjct: 1201 CKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQ-----LEDATKLFESLADRG 1255

Query: 193  MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
            ++ N  +Y  +   + + QK+DEA    ++M+ KG  P
Sbjct: 1256 IKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGLKP 1293



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 69/135 (51%), Gaps = 5/135 (3%)

Query: 93   MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
            + D L K+G   EA Q+   ++ KG  PD++ +  ++      GQ ++A ++F  +   G
Sbjct: 1196 LIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRG 1255

Query: 153  VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            +  N ++Y +LI G         + + +A ++  EM  KG++P+  TY  +  A  ++ +
Sbjct: 1256 IKLNVFSYNILINGYC-----KDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGR 1310

Query: 213  VDEARGLLQQMKAKG 227
            V  A+ L  +M+  G
Sbjct: 1311 VRTAQKLFVEMQTCG 1325



 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/147 (24%), Positives = 60/147 (40%), Gaps = 33/147 (22%)

Query: 116  KGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAA----- 170
            +G  PD V  T +++         +A+++F  M   G+  +A TY +LI GL  A     
Sbjct: 1010 RGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTKKGLLGDAKTYGILINGLCKARKTGL 1069

Query: 171  -------ADGNAKILGDAQKYLM-------------------EMVGKGMRPNAGTYTAVF 204
                     GN K  GD   Y M                   EM+G G+ P+   Y+++ 
Sbjct: 1070 AIKLHEKMKGNCK--GDVFTYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLM 1127

Query: 205  EAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +   R  ++ EA    ++M+ +G   D
Sbjct: 1128 DGLCRFGRLKEALEFFKEMEGRGISAD 1154



 Score = 42.7 bits (99), Expect = 0.13,   Method: Composition-based stats.
 Identities = 39/157 (24%), Positives = 62/157 (39%), Gaps = 24/157 (15%)

Query: 88   NNAVKMFD-------------------ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
            N+A+K+FD                   +++K G       ++ +I D G  PD+     +
Sbjct: 928  NDAIKLFDRSLCSEPMPCTDTFNHLLASVAKLGYYSTVFPMYRKINDVGIQPDLYTLNIL 987

Query: 129  IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
            I    S         VF   L  G  P+A T   L+KG+          + DA +   EM
Sbjct: 988  IHCCCSLRAVGCGFGVFGGFLKRGFEPDAVTVTTLVKGVWMENG-----IPDAVQLFDEM 1042

Query: 189  VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
              KG+  +A TY  +     +A+K   A  L ++MK 
Sbjct: 1043 TKKGLLGDAKTYGILINGLCKARKTGLAIKLHEKMKG 1079


>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 618

 Score = 95.1 bits (235), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 93/188 (49%), Gaps = 16/188 (8%)

Query: 55  PPYDPFKKVVD--EEPTDPRNLQEIFHKMRTEGLTNNAVKMF---DALSKDGLTHEALQL 109
           PP   F +++    +      L  ++++MR  GL+ +   +    + L       EAL  
Sbjct: 89  PPISSFNRLLGGLAKINHYSQLFSLYNEMRLAGLSPDLFTLSILANCLCNVNRVSEALAA 148

Query: 110 FAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169
            A I  +G++P+VV +T +I+      +  EA R+F+RM   G  PNA TY  LIKGL  
Sbjct: 149 MAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCTPNAVTYGTLIKGLCQ 208

Query: 170 AADGNA------KILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
             + N       ++L DA +Y     G   +P   TY+ + +   +  + DEA+ L ++M
Sbjct: 209 TGNVNIALKLHKEMLNDASQY-----GVNCKPGVITYSIIIDGLCKVGREDEAKELFEEM 263

Query: 224 KAKGFVPD 231
           KA+G +PD
Sbjct: 264 KAQGMIPD 271



 Score = 90.1 bits (222), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 77/140 (55%), Gaps = 5/140 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K G   EA +LF ++K +G +PDV++++ +I  +  AG+  ++  +F  M+  G
Sbjct: 243 IIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQG 302

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V P+  T++VLI  L          + +A+K L  M+ +G+ PN  TY ++ + F     
Sbjct: 303 VQPDMVTFSVLIDTLCKEGK-----VTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGD 357

Query: 213 VDEARGLLQQMKAKGFVPDE 232
           ++ AR L   M +KG  PDE
Sbjct: 358 LNSARELFLSMPSKGLEPDE 377



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 77/160 (48%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+F +M+ +G+  + +    +       G   ++  LF ++ D+G  PD+V  + +I+ 
Sbjct: 257 KELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDT 316

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G+  EA ++   M+  G+ PN  TY  LI G     D N+     A++  + M  K
Sbjct: 317 LCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNS-----ARELFLSMPSK 371

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G+ P+  +YT +   + +  KV EA  L  +M   G  P+
Sbjct: 372 GLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPN 411



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 74/163 (45%), Gaps = 11/163 (6%)

Query: 69  TDPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAH 125
           T+ + L E+   M   G+  N +    + D     G  + A +LF  +  KG  PD +++
Sbjct: 324 TEAKKLLEV---MIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEISY 380

Query: 126 TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185
           T +I  Y    + KEA+ ++  ML  G +PN  TY  L+KGL          +GDA+K  
Sbjct: 381 TTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGK-----VGDAKKLF 435

Query: 186 MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
             M   G+  N+  Y    +   +   + EA  L  ++K+  F
Sbjct: 436 GVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNF 478



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/148 (28%), Positives = 70/148 (47%), Gaps = 8/148 (5%)

Query: 76  EIFHKMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F+++++        N   + D L K G    A +LF ++  +G  PDVV +  +I  +
Sbjct: 468 ELFNELKSYNFKLNIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGF 527

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              GQ   A  +F +M  +G  P+   Y  L+ G     +GN   L +  K L +MV K 
Sbjct: 528 CKVGQVDNANILFEKMEENGCTPDIIAYNTLLCGF---CEGNK--LEEVIKLLHKMVQKD 582

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLL 220
           + PNA + T V +   + +K  +   LL
Sbjct: 583 VSPNAASCTIVVDMLCKDEKYKKFVDLL 610



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 75/161 (46%), Gaps = 10/161 (6%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +++F  M+T G++ N+       D L K+    EA++LF ++K      ++  ++ +I+ 
Sbjct: 432 KKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNFKLNIENYSCLIDG 491

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD-GNAKILGDAQKYLMEMVG 190
              AG+ + A  +F ++   G+ P+  TY ++I G        NA IL +      +M  
Sbjct: 492 LCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANILFE------KMEE 545

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            G  P+   Y  +   F    K++E   LL +M  K   P+
Sbjct: 546 NGCTPDIIAYNTLLCGFCEGNKLEEVIKLLHKMVQKDVSPN 586


>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
 gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
          Length = 471

 Score = 94.7 bits (234), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 82/160 (51%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           ++ F  M + G + + V    + DAL K+G T EA++LF  +  KG+MPD V + +++  
Sbjct: 204 KQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLG 263

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
            A      EA  +F +M+ASG APN  TY++++ G        AK + DA K L EM   
Sbjct: 264 LARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHC-----RAKKVDDAHKVLEEMSKI 318

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G  P+  TY  + +   +   VD+A  L   M   G  PD
Sbjct: 319 GAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPD 358



 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 92/177 (51%), Gaps = 15/177 (8%)

Query: 84  EGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALR 143
           + +T N +     L + G   EA Q F  +  +G+ PDVVA+  +++A    G+  EA++
Sbjct: 183 DNITYNTI--LSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMK 240

Query: 144 VFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAV 203
           +F  ++A G  P+  TY  ++ GLA  ++     + +A++   +MV  G  PN  TY+ V
Sbjct: 241 LFKDVIAKGYMPDTVTYNSILLGLARKSN-----MDEAEEMFKKMVASGCAPNGATYSIV 295

Query: 204 FEAFVRAQKVDEARGLLQQMKAKGFVPD--------EKAVKEALIDKRGQGFRGVIN 252
                RA+KVD+A  +L++M   G VPD        +   K  L+DK  + F  +++
Sbjct: 296 LSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVD 352



 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 81/163 (49%), Gaps = 7/163 (4%)

Query: 72  RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R+  ++F +M   G++ + ++   + D  +K G   EA +L+ ++   G  P +  + ++
Sbjct: 25  RDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANRLYEEMVSVGLEPSIYTYNSL 84

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           + A+    + KEA+ +F  M   G  P+  TY+ +I GL        K+    +    +M
Sbjct: 85  LNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCKT----GKVTEALEMLFHKM 140

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + +G   N   Y A+     + + ++ A  LL++M +KG+VPD
Sbjct: 141 IERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPD 183



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 81/178 (45%), Gaps = 14/178 (7%)

Query: 75  QEIFHKMRTEGLTNNAVKMFDALS------KDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           +E+F KM   G   N       LS      K    H+ L+  ++I   G +PDVV +  +
Sbjct: 274 EEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKI---GAVPDVVTYNIL 330

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           ++         +A  +F  M+ +G AP+  +Y+V++ GL          + DA+     M
Sbjct: 331 LDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNK-----VHDARVLFDRM 385

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
           + + + P+  T+  + +   +A K+DEA+ LL QM   G  PD  A    +   R QG
Sbjct: 386 IERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSGCAPDYVAYNTLMNGLRKQG 443



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 67/139 (48%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K  L  +A +LF+ + D G  PD+V+++ V+       +  +A  +F RM+   
Sbjct: 330 LLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERK 389

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+  T+ +L+ GL  A       L +A+  L +M   G  P+   Y  +     +  +
Sbjct: 390 LVPDVVTFNILMDGLCKAGK-----LDEAKDLLDQMTCSGCAPDYVAYNTLMNGLRKQGR 444

Query: 213 VDEARGLLQQMKAKGFVPD 231
             +A  L Q MK KGF+ D
Sbjct: 445 HIQADRLTQAMKEKGFLSD 463



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 59/112 (52%), Gaps = 5/112 (4%)

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
           P+      V++++   G+ ++  ++F +ML +G++P+   Y +LI G A         + 
Sbjct: 6   PNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGR-----VD 60

Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +A +   EMV  G+ P+  TY ++  AF +  K+ EA  L + M  KGF PD
Sbjct: 61  EANRLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPD 112


>gi|359473521|ref|XP_002273398.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Vitis vinifera]
          Length = 755

 Score = 94.4 bits (233), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 87/159 (54%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E  H+M+  GL  N V      DA  K+G+  EA++ F  ++     P+   +T++I+A 
Sbjct: 346 EFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDAN 405

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             AG   EAL++   +L +G+  N  TY  L+ GL    +G  K   +A++    M+  G
Sbjct: 406 CKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGL--CEEGRMK---EAEEVFRAMLNAG 460

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + PN  TYTA+   F++A++++ A+ +L++MK K   PD
Sbjct: 461 VAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPD 499



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 79/155 (50%), Gaps = 8/155 (5%)

Query: 78  FHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F +M   GL  N      + D L K+     A +LF ++ DKG MPD +A+TA+I+    
Sbjct: 593 FGRMSEIGLQPNVAVYTALVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMK 652

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            G  +EAL +  RM+  G+  + + Y  LI GL+ +       +  A+  L EM+GKG+ 
Sbjct: 653 HGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHSGQ-----VQKARNLLDEMIGKGVL 707

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFV 229
           P+   Y  + + +    KVDEA  L  +M  +G +
Sbjct: 708 PDEVVYMCLIKKYYALGKVDEALELQNEMAKRGMI 742



 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 70/145 (48%), Gaps = 6/145 (4%)

Query: 97  LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
           L  +    EA  L  +IK+ G   + V +T +++AY  +GQ  EAL +   ML  G+   
Sbjct: 510 LCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIAT 569

Query: 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
             TY  LI GL  +      ++ +A  +   M   G++PN   YTA+ +   +    + A
Sbjct: 570 EVTYCALIDGLCKSG-----LVQEAMHHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEVA 624

Query: 217 RGLLQQMKAKGFVPDEKAVKEALID 241
           + L  +M  KG +PD K    ALID
Sbjct: 625 KKLFDEMLDKGMMPD-KIAYTALID 648



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 59/182 (32%), Positives = 86/182 (47%), Gaps = 15/182 (8%)

Query: 74  LQE---IFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           LQE    F  MR   LT N      + DA  K G   EAL+L  +I   G   +VV +TA
Sbjct: 376 LQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTA 435

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           +++     G+ KEA  VF  ML +GVAPN  TY  L+ G        AK +  A+  L E
Sbjct: 436 LLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFI-----KAKEMEYAKDILKE 490

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID---KRG 244
           M  K ++P+   Y  +        +++EA+ L+ ++K  G +     +   L+D   K G
Sbjct: 491 MKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESG-INTNAVIYTTLMDAYFKSG 549

Query: 245 QG 246
           Q 
Sbjct: 550 QA 551



 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 75/153 (49%), Gaps = 12/153 (7%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K GL  EA+  F ++ + G  P+V  +TA+++        + A ++F  ML  G
Sbjct: 576 LIDGLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEVAKKLFDEMLDKG 635

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM---EMVGKGMRPNAGTYTAVFEAFVR 209
           + P+   Y  LI       DGN K  G+ Q+ L     M+  GM  +   YTA+      
Sbjct: 636 MMPDKIAYTALI-------DGNMK-HGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSH 687

Query: 210 AQKVDEARGLLQQMKAKGFVPDEKAVKEALIDK 242
           + +V +AR LL +M  KG +PDE  V   LI K
Sbjct: 688 SGQVQKARNLLDEMIGKGVLPDE-VVYMCLIKK 719



 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 66/140 (47%), Gaps = 5/140 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M D L K+G    A  LF Q+K+ G  PD+V + ++I+ +   G   E + +F +M  + 
Sbjct: 261 MIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDAD 320

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  TY  LI           + +  A ++L EM   G++PN  TY+   +AF +   
Sbjct: 321 CDPDVITYNALINCFC-----KFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGM 375

Query: 213 VDEARGLLQQMKAKGFVPDE 232
           + EA      M+     P+E
Sbjct: 376 LQEAIKFFVDMRRVALTPNE 395



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 80/164 (48%), Gaps = 16/164 (9%)

Query: 77  IFHKMRT-----EGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           IF +M+      + +T NA  + +   K     +A +   ++K  G  P+VV ++  I+A
Sbjct: 312 IFEQMKDADCDPDVITYNA--LINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDA 369

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKI--LGDAQKYLMEMV 189
           +   G  +EA++ F+ M    + PN +TY  LI       D N K   L +A K + E++
Sbjct: 370 FCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLI-------DANCKAGNLAEALKLVEEIL 422

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK 233
             G++ N  TYTA+ +      ++ EA  + + M   G  P+++
Sbjct: 423 QAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQE 466



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +F AL + G+  EA + F +++     P   +  A++   +  G+G  + + F  M A+G
Sbjct: 191 LFSALIELGMLEEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAG 250

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +  + +TY ++I  L    D     L  A+    +M   G  P+  TY ++ +   +   
Sbjct: 251 IKRSVFTYNIMIDYLCKEGD-----LEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGL 305

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +DE   + +QMK     PD
Sbjct: 306 LDECICIFEQMKDADCDPD 324


>gi|302763353|ref|XP_002965098.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
 gi|300167331|gb|EFJ33936.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
          Length = 600

 Score = 94.0 bits (232), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 55/131 (41%), Positives = 75/131 (57%), Gaps = 7/131 (5%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA +LF ++K  G  P+VVA+TAVI+    AG+ ++ L+ F  M  S   P   TY V+I
Sbjct: 126 EACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTTYTVVI 185

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            GL       A++L DA K   +MV KG  P+  TYT + + F +A K+DEAR LL  M 
Sbjct: 186 DGLC-----KAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVML 240

Query: 225 AKGFVPDEKAV 235
            KG  P+  AV
Sbjct: 241 TKG--PEPTAV 249



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 83/164 (50%), Gaps = 9/164 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMP-DVVAHTAVIEAY 132
           ++ +M   G+  NAV    +   L KDG T  A  LF ++ +K  +P  +V++T +I+  
Sbjct: 410 VYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGL 469

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             AG+  EA   F  M+  G+ P  +TY  LI  LA A       + +A+K + +MV  G
Sbjct: 470 GKAGRVSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGR-----IPEAKKLVEDMVKLG 524

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK 236
           + P+   Y+A+    + +  VD A  + Q+M  +G  P+E   K
Sbjct: 525 VNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYK 568



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 80/158 (50%), Gaps = 8/158 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F +++T G + N V    + D L K G   + L+ F ++     +P    +T VI+  
Sbjct: 129 ELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTTYTVVIDGL 188

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             A    +A +VF +M+  G  P+  TY  LI G + A+      + +A+K L  M+ KG
Sbjct: 189 CKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASK-----MDEARKLLDVMLTKG 243

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
             P A TY ++   F +   ++EA+ ++ QM+ +G  P
Sbjct: 244 PEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEP 281



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 84/161 (52%), Gaps = 10/161 (6%)

Query: 75  QEIFHKMRTEGLTNNAVKMFDALS---KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+  +MR  G           LS     G   EA Q+  ++  +G  PDV+ +T++I+ 
Sbjct: 268 KEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDL 327

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
             S G+  EA  VF  M+  G AP+A TY  +I+  +    GN +  G+    ++E++ K
Sbjct: 328 LFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKI--GNVEAAGE----ILELMAK 381

Query: 192 -GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            G+ P+   Y ++ + +V+ ++VD+A G+  +M A G  P+
Sbjct: 382 SGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPN 422



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 72/139 (51%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K  +  +A ++F Q+  KG +PD + +T +I+ ++ A +  EA ++   ML  G
Sbjct: 184 VIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKG 243

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P A TY  ++ G          ++ +A++ + +M  +G  P    +T++   ++   +
Sbjct: 244 PEPTAVTYGSIVHGFC-----KLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGR 298

Query: 213 VDEARGLLQQMKAKGFVPD 231
            +EA  +L +M A+G  PD
Sbjct: 299 AEEAYQVLTEMTARGCAPD 317



 Score = 63.5 bits (153), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 85/194 (43%), Gaps = 34/194 (17%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +F  M  +G   +A+    +    SK G    A ++   +   G  PD  A+ ++++ 
Sbjct: 338 RHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDG 397

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL------------------------ 167
           Y    +  +A  V+ RM+ASG+ PNA T+ VL+ GL                        
Sbjct: 398 YVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPP 457

Query: 168 -----AAAADGNAKILGDAQKYL--MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
                    DG  K    ++ +L   EM+ +G+ P   TYT++  +  +A ++ EA+ L+
Sbjct: 458 TLVSYTILIDGLGKAGRVSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLV 517

Query: 221 QQMKAKGFVPDEKA 234
           + M   G  PD +A
Sbjct: 518 EDMVKLGVNPDVQA 531



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 5/115 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K G   EA   F ++ D+G +P+   +T++I + A AG+  EA ++   M+  G
Sbjct: 465 LIDGLGKAGRVSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLG 524

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAF 207
           V P+   Y+ LI GL      ++ ++  A     EM+ +G  PN  TY  +   F
Sbjct: 525 VNPDVQAYSALITGLI-----DSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGF 574



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 62/153 (40%), Gaps = 28/153 (18%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA + F  + D G  PDV+A T +I  +  AGQ +   ++  + L     P+ + Y  +I
Sbjct: 25  EAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHKLLNQALKR-FRPDVFLYTSVI 83

Query: 165 KGLAAAAD---------------------------GNAKILGDAQKYLMEMVGKGMRPNA 197
            G   A D                            ++K + +A +   E+   G  PN 
Sbjct: 84  HGYCKAGDLDTGYFRAVTPKASLDVISYTTVIKGLADSKRIDEACELFEELKTAGCSPNV 143

Query: 198 GTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
             YTAV +  ++A ++++     ++M     VP
Sbjct: 144 VAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVP 176


>gi|229914885|gb|ACQ90610.1| putative PPR repeat protein [Eutrema halophilum]
          Length = 1023

 Score = 94.0 bits (232), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 88/164 (53%), Gaps = 9/164 (5%)

Query: 71  PRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P+ L E F +M+  GL  N V    + DA  K+ +  +AL+ +  ++  G +P+   +T+
Sbjct: 220 PKGL-EFFREMKQSGLKPNVVSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTS 278

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           +++AY   G   +A R+   M   GV  N  TY  LI GL      + + + +A++   +
Sbjct: 279 LVDAYCKIGNLSDAFRLADEMSQVGVEWNVVTYTALIDGLC-----DVERIKEAEELFGK 333

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           MV  G+ PN  +YTA+   FV+A+ +D A  LL +MK +G  PD
Sbjct: 334 MVTAGVIPNLASYTALIHGFVKAKNMDRALELLDEMKGRGIKPD 377



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 6/149 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M D + K+G    A  LF ++K +G +PD V + ++I+ Y   G+  + +  F  M +  
Sbjct: 139 MIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMS 198

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  TY  LI             L    ++  EM   G++PN  +Y+ + +AF +   
Sbjct: 199 CEPDVITYNTLINCFCKFGK-----LPKGLEFFREMKQSGLKPNVVSYSTLVDAFCKEDM 253

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALID 241
           + +A      M+  G VP+E     +L+D
Sbjct: 254 MQQALKFYVDMRRLGLVPNEHTYT-SLVD 281



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 75/150 (50%), Gaps = 8/150 (5%)

Query: 81  MRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ 137
           MR  GL  N      + DA  K G   +A +L  ++   G   +VV +TA+I+      +
Sbjct: 264 MRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADEMSQVGVEWNVVTYTALIDGLCDVER 323

Query: 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA 197
            KEA  +F +M+ +GV PN  +Y  LI G        AK +  A + L EM G+G++P+ 
Sbjct: 324 IKEAEELFGKMVTAGVIPNLASYTALIHGFV-----KAKNMDRALELLDEMKGRGIKPDL 378

Query: 198 GTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
             Y     +    +K++ A+ ++ +M+ KG
Sbjct: 379 LLYGTFIWSLCGLEKIEAAKVVMNEMQEKG 408



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 79/211 (37%), Gaps = 44/211 (20%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+F KM T G+  N      +     K      AL+L  ++K +G  PD++ +   I +
Sbjct: 328 EELFGKMVTAGVIPNLASYTALIHGFVKAKNMDRALELLDEMKGRGIKPDLLLYGTFIWS 387

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAY--------------------------------- 158
                + + A  V   M   G+  N +                                 
Sbjct: 388 LCGLEKIEAAKVVMNEMQEKGIKANTFIYTTLMDAYFKSENPSEGLHLLEEMLELDIEVT 447

Query: 159 --TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK-GMRPNAGTYTAVFEAFVRAQKVDE 215
             T+ VLI GL        K++  A  Y   +    G++ NA  YTA+ +   +  +V+ 
Sbjct: 448 AVTFCVLIDGLC-----KNKLVSKAIDYFGRISNDFGLQANAAIYTAMIDGLCKEDQVEA 502

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
           A  L +QM  KG VPD  A    +  K  QG
Sbjct: 503 ATTLFEQMAQKGLVPDRTAYTSLIDGKLKQG 533



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 80/179 (44%), Gaps = 15/179 (8%)

Query: 41  QPTKKYVNTKS-KLPPPYDPFKKVVDEEPTDPRNLQEIFH---KMRTEGLTNNAVK---M 93
           Q  K YV+ +   L P    +  +VD       NL + F    +M   G+  N V    +
Sbjct: 256 QALKFYVDMRRLGLVPNEHTYTSLVDAY-CKIGNLSDAFRLADEMSQVGVEWNVVTYTAL 314

Query: 94  FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGV 153
            D L       EA +LF ++   G +P++ ++TA+I  +  A     AL +   M   G+
Sbjct: 315 IDGLCDVERIKEAEELFGKMVTAGVIPNLASYTALIHGFVKAKNMDRALELLDEMKGRGI 374

Query: 154 APNAYTYAVLIKGLAAAADGNAKILGDAQKYLM-EMVGKGMRPNAGTYTAVFEAFVRAQ 211
            P+   Y   I  L     G  KI  +A K +M EM  KG++ N   YT + +A+ +++
Sbjct: 375 KPDLLLYGTFIWSLC----GLEKI--EAAKVVMNEMQEKGIKANTFIYTTLMDAYFKSE 427



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 10/109 (9%)

Query: 139 KEALRVFMRMLASGVAPNAYTYAVLIKGLA--AAADGNAKILGDAQKYLMEMVGKGMRPN 196
           +EAL+ F +M    V P   +   L+   A     DG        +++  +M+G G +P 
Sbjct: 80  EEALQCFSKMKRCRVFPKTRSCNGLLHKFARLGKTDG-------MKRFFKDMIGAGSKPT 132

Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
             TY  + +   +   ++ A GL ++MK +G +PD      ++ID  G+
Sbjct: 133 VFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPD-TVTYNSMIDGYGK 180



 Score = 37.4 bits (85), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 3/76 (3%)

Query: 85  GLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEA 141
           GL  NA     M D L K+     A  LF Q+  KG +PD  A+T++I+     G   +A
Sbjct: 479 GLQANAAIYTAMIDGLCKEDQVEAATTLFEQMAQKGLVPDRTAYTSLIDGKLKQGNVVQA 538

Query: 142 LRVFMRMLASGVAPNA 157
           L +  +M   GV   A
Sbjct: 539 LALRDKMAEIGVESGA 554


>gi|297738285|emb|CBI27486.3| unnamed protein product [Vitis vinifera]
          Length = 509

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 87/159 (54%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E  H+M+  GL  N V      DA  K+G+  EA++ F  ++     P+   +T++I+A 
Sbjct: 147 EFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDAN 206

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             AG   EAL++   +L +G+  N  TY  L+ GL    +G  K   +A++    M+  G
Sbjct: 207 CKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGL--CEEGRMK---EAEEVFRAMLNAG 261

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + PN  TYTA+   F++A++++ A+ +L++MK K   PD
Sbjct: 262 VAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPD 300



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 78/149 (52%), Gaps = 7/149 (4%)

Query: 83  TEGLT--NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140
           TE LT     + + D L K+     A +LF ++ DKG MPD +A+TA+I+     G  +E
Sbjct: 353 TEALTLLEEMLDLVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQE 412

Query: 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTY 200
           AL +  RM+  G+  + + Y  LI GL+ +       +  A+  L EM+GKG+ P+   Y
Sbjct: 413 ALNLRDRMIEIGMELDLHAYTALIWGLSHSGQ-----VQKARNLLDEMIGKGVLPDEVVY 467

Query: 201 TAVFEAFVRAQKVDEARGLLQQMKAKGFV 229
             + + +    KVDEA  L  +M  +G +
Sbjct: 468 MCLIKKYYALGKVDEALELQNEMAKRGMI 496



 Score = 73.6 bits (179), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 78/160 (48%), Gaps = 11/160 (6%)

Query: 74  LQE---IFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           LQE    F  MR   LT N      + DA  K G   EAL+L  +I   G   +VV +TA
Sbjct: 177 LQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTA 236

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           +++     G+ KEA  VF  ML +GVAPN  TY  L+ G        AK +  A+  L E
Sbjct: 237 LLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFI-----KAKEMEYAKDILKE 291

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
           M  K ++P+   Y  +        +++EA+ L+ ++K  G
Sbjct: 292 MKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESG 331



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 66/140 (47%), Gaps = 5/140 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M D L K+G    A  LF Q+K+ G  PD+V + ++I+ +   G   E + +F +M  + 
Sbjct: 62  MIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDAD 121

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  TY  LI           + +  A ++L EM   G++PN  TY+   +AF +   
Sbjct: 122 CDPDVITYNALINCFC-----KFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGM 176

Query: 213 VDEARGLLQQMKAKGFVPDE 232
           + EA      M+     P+E
Sbjct: 177 LQEAIKFFVDMRRVALTPNE 196



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 75/173 (43%), Gaps = 35/173 (20%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEAL------------- 142
            L  +    EA  L  +IK+ G   + V +T +++AY  +GQ  EAL             
Sbjct: 310 GLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLVDGL 369

Query: 143 ----------RVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM---EMV 189
                     ++F  ML  G+ P+   Y  LI       DGN K  G+ Q+ L     M+
Sbjct: 370 CKNNCFEVAKKLFDEMLDKGMMPDKIAYTALI-------DGNMK-HGNLQEALNLRDRMI 421

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDK 242
             GM  +   YTA+      + +V +AR LL +M  KG +PDE  V   LI K
Sbjct: 422 EIGMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDE-VVYMCLIKK 473



 Score = 44.7 bits (104), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 58/130 (44%), Gaps = 5/130 (3%)

Query: 102 LTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYA 161
           +  EA + F +++     P   +  A++   +  G+G  + + F  M A+G+  + +TY 
Sbjct: 1   MLEEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYN 60

Query: 162 VLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221
           ++I  L    D     L  A+    +M   G  P+  TY ++ +   +   +DE   + +
Sbjct: 61  IMIDYLCKEGD-----LEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFE 115

Query: 222 QMKAKGFVPD 231
           QMK     PD
Sbjct: 116 QMKDADCDPD 125



 Score = 42.0 bits (97), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 6/107 (5%)

Query: 139 KEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAG 198
           +EA   F++M    V P   +   L+  L+    G+      ++K+  +M   G++ +  
Sbjct: 3   EEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDL-----SRKFFKDMGAAGIKRSVF 57

Query: 199 TYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
           TY  + +   +   ++ AR L  QMK  GF PD      +LID  G+
Sbjct: 58  TYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPD-IVTYNSLIDGHGK 103


>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 621

 Score = 93.6 bits (231), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 83/159 (52%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++  KM  EG   + +    + + L K GL ++A +LF ++K KG  PDVV ++ +I A 
Sbjct: 310 QVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITAL 369

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             A + + A  +F  M + G+ P+ +TY  +I  L     G A  + DA +   EM GKG
Sbjct: 370 GKAARVESACVLFEEMESVGIQPDLFTYCSIITVL-----GKAGQVDDADRLFSEMRGKG 424

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + P+  TY A   +  R  +  EAR + + MK  G +PD
Sbjct: 425 LSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPD 463



 Score = 87.0 bits (214), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 90/180 (50%), Gaps = 11/180 (6%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+  +M   G   + +    +   L KDG T +A +LF ++K +G  PD +  TA+++A 
Sbjct: 170 ELLEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDAL 229

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             AG+  +AL +   M   GV P   TY  LI G     D     L +A   L EM   G
Sbjct: 230 GKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGD-----LVEAYNLLDEMKRNG 284

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVIN 252
            +P+  TY+ +    ++A ++DEA  +L++M+ +G  PD       LI+  G G  G++N
Sbjct: 285 CKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPD-TITYNTLIN--GLGKAGLLN 341



 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/139 (33%), Positives = 71/139 (51%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +AL+K G   EA  LF ++K     PDVV+++ +I +   AG+ + AL V   M A G
Sbjct: 15  LLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEVVAEMQAKG 74

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN +TY  L+  L     G A    +A + L EM   G  P+  TY  +     +A +
Sbjct: 75  CKPNLWTYNTLVDCL-----GKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGR 129

Query: 213 VDEARGLLQQMKAKGFVPD 231
           + EA  L  +M+ +G VPD
Sbjct: 130 LSEAFTLFAEMRERGCVPD 148



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 82/176 (46%), Gaps = 9/176 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+  +M+ +G   N      + D L K G   EAL+L A+++D G +PDV  +  +I   
Sbjct: 65  EVVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTL 124

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             AG+  EA  +F  M   G  P+ +TY  LI GL             A + L EM   G
Sbjct: 125 GKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQK-----AMELLEEMERHG 179

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFR 248
             P+  TY+++     +  +  +A  L Q+MK +G  PD      AL+D  G+  R
Sbjct: 180 CPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFT-ALMDALGKAGR 234



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 82/168 (48%), Gaps = 9/168 (5%)

Query: 77  IFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M + G+  +      +   L K G   +A +LF++++ KG  PDV+ + A + +  
Sbjct: 381 LFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLG 440

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G+ KEA ++F  M  SG+ P+  TY  L+ GL+       K + DA   L E++ +G 
Sbjct: 441 RGGRFKEARKIFEDMKESGLLPDVATYDALLLGLS-----KTKEVDDACGLLKELIEQGC 495

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
             ++  +    E       VDEA  LLQ   +KG  P   +   ALID
Sbjct: 496 AFDSLKFDECLEILTSWGNVDEAHELLQFANSKGLWPGASSYN-ALID 542



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 66/129 (51%), Gaps = 6/129 (4%)

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
           P+VV + +++ A A AGQ +EA  +F  + A+   P+  +Y+ LI  L  A    A    
Sbjct: 7   PNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEA---- 62

Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
            A + + EM  KG +PN  TY  + +   +A + DEA  LL +M+  G VPD +     L
Sbjct: 63  -ALEVVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYN-CL 120

Query: 240 IDKRGQGFR 248
           I   G+  R
Sbjct: 121 ISTLGKAGR 129



 Score = 45.4 bits (106), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 40/75 (53%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DAL+K G   EA      +K++G  PD+V+++++I A    GQ   A  +   M   G
Sbjct: 540 LIDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLISALGQTGQIDTAFELLEEMSKRG 599

Query: 153 VAPNAYTYAVLIKGL 167
           +  +  +Y+ L++ L
Sbjct: 600 LKLSPRSYSNLVRKL 614



 Score = 40.0 bits (92), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 5/110 (4%)

Query: 92  KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
           +  + L+  G   EA +L      KG  P   ++ A+I+A A AG+  EA      +   
Sbjct: 504 ECLEILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQ 563

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYT 201
           G  P+  +Y+ LI  L     G    +  A + L EM  +G++ +  +Y+
Sbjct: 564 GGKPDIVSYSSLISAL-----GQTGQIDTAFELLEEMSKRGLKLSPRSYS 608


>gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa]
 gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score = 93.2 bits (230), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 82/158 (51%), Gaps = 8/158 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++  KM  +G   N V    + D+L KD L ++A+ L +++ D+G  PDVV ++ ++  +
Sbjct: 218 QLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGF 277

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
            S G   EA  +F  M+   V PN  T+ +L+ GL         ++ +A+     M  KG
Sbjct: 278 CSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLCKEG-----MVSEARCVFEAMTKKG 332

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
             PNA TY A+ + +    ++DEA+ +L  M  KG  P
Sbjct: 333 AEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAP 370



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 72/139 (51%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K G T  ALQL  ++++KG  P++VA+T +I++        +A+ +   M+  G
Sbjct: 203 VINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRG 262

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+  TY+ ++ G  +        L +A     EMVG+ + PN  T+T + +   +   
Sbjct: 263 IPPDVVTYSTILHGFCSLGH-----LNEATILFNEMVGRNVMPNTVTFTILVDGLCKEGM 317

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V EAR + + M  KG  P+
Sbjct: 318 VSEARCVFEAMTKKGAEPN 336



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 5/132 (3%)

Query: 100 DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYT 159
           +G   EA+ LF ++  +GH PDV++++ VI     +G    AL++  +M   G  PN   
Sbjct: 175 EGEIKEAVGLFNEMVRRGHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVA 234

Query: 160 YAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGL 219
           Y  +I  L         ++ DA   L EMV +G+ P+  TY+ +   F     ++EA  L
Sbjct: 235 YTTIIDSLCKDT-----LVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATIL 289

Query: 220 LQQMKAKGFVPD 231
             +M  +  +P+
Sbjct: 290 FNEMVGRNVMPN 301



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 78/158 (49%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F++M    +  N V    + D L K+G+  EA  +F  +  KG  P+   + A+++ Y 
Sbjct: 289 LFNEMVGRNVMPNTVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYC 348

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
              Q  EA +V   M+  G AP  ++Y +LI G         + L +A+  L+EM  K +
Sbjct: 349 LNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYC-----KRRRLDEAKSLLVEMSEKEL 403

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            P+  TY+ + +   +  +  EA  L ++M + G +PD
Sbjct: 404 TPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPD 441



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 8/172 (4%)

Query: 71  PRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P+    +F +M + GL  + +    + D L K G   EAL+L   +++    PD+V +  
Sbjct: 423 PQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNI 482

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           +IE    AG+ + A  +F ++ A G+ P   TY ++IKGL      +     +A +   +
Sbjct: 483 LIEGMFIAGKLEVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSD-----EAYELFRK 537

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
           M   G  PN+ +Y  + + F++ Q    A  L+ +M  K F  D    +  L
Sbjct: 538 MEDDGFLPNSCSYNVIIQGFLQNQDSSTAIRLIDEMVGKRFSADSSTFQMLL 589



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 71/139 (51%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L + G   EAL LF ++   G +PD++ ++ +++     G   EAL++   M  S 
Sbjct: 413 LMQGLCQVGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESK 472

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+   Y +LI+G+  A       L  A++   ++   G++P   TYT + +  ++   
Sbjct: 473 IEPDIVLYNILIEGMFIAGK-----LEVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGL 527

Query: 213 VDEARGLLQQMKAKGFVPD 231
            DEA  L ++M+  GF+P+
Sbjct: 528 SDEAYELFRKMEDDGFLPN 546



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 71/152 (46%), Gaps = 13/152 (8%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA  L  ++ +K   PD V ++ +++     G+ +EAL +F  M +SG+ P+  TY+ L+
Sbjct: 390 EAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDLMTYSTLL 449

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            GL          L +A K L  M    + P+   Y  + E    A K++ A+ L  ++ 
Sbjct: 450 DGLCKHGH-----LDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGKLEVAKELFSKLF 504

Query: 225 AKGFVPDEKA--------VKEALIDKRGQGFR 248
           A G  P  +         +KE L D+  + FR
Sbjct: 505 ADGIQPTIRTYTIMIKGLLKEGLSDEAYELFR 536



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           + ++M   G+T+N   +    + L +      A+ +  ++   G  PD +    +I    
Sbjct: 114 LCNQMDLFGVTHNVYSLNILINCLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRC 173

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G+ KEA+ +F  M+  G  P+  +Y+ +I GL  +  GN  +   A + L +M  KG 
Sbjct: 174 IEGEIKEAVGLFNEMVRRGHQPDVISYSTVINGLCKS--GNTSM---ALQLLRKMEEKGC 228

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +PN   YT + ++  +   V++A  LL +M  +G  PD
Sbjct: 229 KPNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPPD 266


>gi|356561416|ref|XP_003548977.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 456

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 82/156 (52%), Gaps = 6/156 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L KD L +EA   ++++  +G  P+V+ +T +I  +  AGQ   A  +   M+   
Sbjct: 198 IIDGLCKDKLVNEAYDFYSEMNARGIFPNVITYTTLIGGFCLAGQLTGAFSLLNEMILKN 257

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN YTYA+LI  L    +G  K   +A+  L EM  +G   +  TYT++ + F + Q 
Sbjct: 258 INPNVYTYAILIDAL--CKEGKVK---EAKNLLAEMHYRGQPADVVTYTSLLDGFCKNQN 312

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFR 248
           +D+A  L  +MK  G  P+ K    ALID   +G R
Sbjct: 313 LDKATALFMKMKEWGIQPN-KYTYTALIDGLCKGGR 347



 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 70/139 (50%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DAL K+G   EA  L A++  +G   DVV +T++++ +       +A  +FM+M   G
Sbjct: 268 LIDALCKEGKVKEAKNLLAEMHYRGQPADVVTYTSLLDGFCKNQNLDKATALFMKMKEWG 327

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN YTY  LI GL          L DAQK   +++ KG   +  TY  +     +   
Sbjct: 328 IQPNKYTYTALIDGLCKGGR-----LKDAQKLFQDLLVKGCCIDVCTYNVMIGGLCKEGM 382

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +DEA  +  +M+  G +P+
Sbjct: 383 LDEALAIKSKMEDNGCIPN 401



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 75/168 (44%), Gaps = 10/168 (5%)

Query: 78  FH-KMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           FH K+  +G   N V    + + L K G T  A++    I+D     +VV +  +I+   
Sbjct: 144 FHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAIKFLRMIEDSSTGLNVVMYNTIIDGLC 203

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
                 EA   +  M A G+ PN  TY  LI G   A       L  A   L EM+ K +
Sbjct: 204 KDKLVNEAYDFYSEMNARGIFPNVITYTTLIGGFCLAGQ-----LTGAFSLLNEMILKNI 258

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
            PN  TY  + +A  +  KV EA+ LL +M  +G  P +     +L+D
Sbjct: 259 NPNVYTYAILIDALCKEGKVKEAKNLLAEMHYRG-QPADVVTYTSLLD 305



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 57/120 (47%), Gaps = 8/120 (6%)

Query: 77  IFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F KM+  G+  N      + D L K G   +A +LF  +  KG   DV  +  +I    
Sbjct: 319 LFMKMKEWGIQPNKYTYTALIDGLCKGGRLKDAQKLFQDLLVKGCCIDVCTYNVMIGGLC 378

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G   EAL +  +M  +G  PN  T+ ++I+ L    D N K    A+K L EM+ KG+
Sbjct: 379 KEGMLDEALAIKSKMEDNGCIPNVVTFEIIIRSL-FKKDENDK----AEKLLHEMIAKGL 433



 Score = 43.1 bits (100), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 57/156 (36%), Gaps = 30/156 (19%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A+ L  Q++ KG  P++V    +I  +   GQ   +  V  ++L  G  PN  T   L+K
Sbjct: 71  AISLSKQMEVKGIEPNLVTLNILINCFCHLGQMSFSFSVLGKILKLGYQPNTITLTTLMK 130

Query: 166 GLAAAADGNAKI-LGD---AQKYLMEMVGKGMRPNAGT---------------------- 199
           GL    +    +   D   AQ + M  V  G   N                         
Sbjct: 131 GLCLKGEVQKSVHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAIKFLRMIEDSSTGL 190

Query: 200 ----YTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
               Y  + +   + + V+EA     +M A+G  P+
Sbjct: 191 NVVMYNTIIDGLCKDKLVNEAYDFYSEMNARGIFPN 226


>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
 gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
          Length = 855

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/131 (41%), Positives = 75/131 (57%), Gaps = 7/131 (5%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA +LF ++K  G  P+VVA+TAVI+    AG+ ++ L+ F  M  S   P   TY V+I
Sbjct: 381 EACELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYTVVI 440

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            GL       A++L DA K   +MV KG  P+  TYT + + F +A K+DEAR LL  M 
Sbjct: 441 DGLC-----KAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVML 495

Query: 225 AKGFVPDEKAV 235
            KG  P+  AV
Sbjct: 496 TKG--PEPTAV 504



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 83/164 (50%), Gaps = 9/164 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMP-DVVAHTAVIEAY 132
           ++ +M   G+  NAV    +   L KDG T  A  LF ++ +K  +P  +V++T +I+  
Sbjct: 665 VYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGL 724

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             AG+  EA   F  M+  G+ P  +TY  LI  LA A       + +A+K + +MV  G
Sbjct: 725 GKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGR-----IPEAKKLVEDMVKLG 779

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK 236
           + P+   Y+A+    + +  VD A  + Q+M  +G  P+E   K
Sbjct: 780 VNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYK 823



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 79/158 (50%), Gaps = 8/158 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F K++T G + N V    + D L K G   + L+ F  +     +P    +T VI+  
Sbjct: 384 ELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYTVVIDGL 443

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             A    +A +VF +M+  G  P+  TY  LI G + A+      + +A+K L  M+ KG
Sbjct: 444 CKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASK-----MDEARKLLDVMLTKG 498

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
             P A TY ++   F +   ++EA+ ++ QM+ +G  P
Sbjct: 499 PEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEP 536



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 84/161 (52%), Gaps = 10/161 (6%)

Query: 75  QEIFHKMRTEGLTNNAVKMFDALS---KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+  +MR  G           LS     G   EA Q+  ++  +G  PDV+ +T++I+ 
Sbjct: 523 KEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDL 582

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
             S G+  EA  VF  M+  G AP+A TY  +I+  +    GN +  G+    ++E++ K
Sbjct: 583 LFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKI--GNVEAAGE----ILELMAK 636

Query: 192 -GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            G+ P+   Y ++ + +V+ ++VD+A G+  +M A G  P+
Sbjct: 637 SGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPN 677



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 72/139 (51%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K  +  +A ++F Q+  KG +PD + +T +I+ ++ A +  EA ++   ML  G
Sbjct: 439 VIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKG 498

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P A TY  ++ G          ++ +A++ + +M  +G  P    +T++   ++   +
Sbjct: 499 PEPTAVTYGSIVHGFC-----KLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGR 553

Query: 213 VDEARGLLQQMKAKGFVPD 231
            +EA  +L +M A+G  PD
Sbjct: 554 AEEAYQVLTEMTARGCAPD 572



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 9/162 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +   +M T GL  + V    + + L K     +A++LF ++   G  P +V++  VI   
Sbjct: 6   DCLKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTVISGL 65

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           AS  +  EA + F  M+ +G  P+   +  LI G   A  G  ++       L+    K 
Sbjct: 66  ASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKA--GQPQV----GHMLLNQALKR 119

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
            RP+   YT+V   + +A  +D    +L++M A G +PD  A
Sbjct: 120 FRPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAA 161



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 87/181 (48%), Gaps = 21/181 (11%)

Query: 58  DPFKKV--VDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQ 112
           DP  K+  VDE         E+F +MR  G   + V    + +ALS  G   EA +L+ +
Sbjct: 167 DPLCKLGRVDEA-------YELFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYRE 219

Query: 113 IKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172
           + ++G+ P +    ++I A   AG+  EA  ++  ++A  VA +   Y  L+       D
Sbjct: 220 MIERGYEPYLEVQDSLIFALCKAGKVDEANEIYQTVVAKKVATSRVAYNSLM-------D 272

Query: 173 GNAKI--LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           G  K+  + D  K L++MV     P+  TY  +   F RA ++D+A  L + + + G  P
Sbjct: 273 GYCKLGRVDDGLKLLLQMVECDNFPDIQTYNILVAGFSRANRLDDALELFKLLSSYGCKP 332

Query: 231 D 231
           +
Sbjct: 333 N 333



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 84/194 (43%), Gaps = 34/194 (17%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +F  M  +G   +A+    +    SK G    A ++   +   G  PD  A+ ++++ 
Sbjct: 593 RHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDG 652

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL------------------------ 167
           Y    +  +A  V+ RM+ASG+ PNA T+ VL+ GL                        
Sbjct: 653 YVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPP 712

Query: 168 -----AAAADGNAKI--LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
                    DG  K   + +A     EM+ +G+ P   TYT++  +  +A ++ EA+ L+
Sbjct: 713 TLVSYTILIDGLGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLV 772

Query: 221 QQMKAKGFVPDEKA 234
           + M   G  PD +A
Sbjct: 773 EDMVKLGVNPDVQA 786



 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 76/149 (51%), Gaps = 12/149 (8%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   K G   + L+L  Q+ +  + PD+  +  ++  ++ A +  +AL +F  + + G
Sbjct: 270 LMDGYCKLGRVDDGLKLLLQMVECDNFPDIQTYNILVAGFSRANRLDDALELFKLLSSYG 329

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PNA TY  +I+GL      +A+ + +A+ +  E +      +  +YT V +    +++
Sbjct: 330 CKPNAATYTTIIQGLY-----DAQRMEEAKAFFDEAL------DVISYTTVIKGLADSKR 378

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALID 241
           +DEA  L +++K  G  P+  A   A+ID
Sbjct: 379 IDEACELFEKLKTAGCSPNVVAYT-AVID 406



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 5/115 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K G   EA   F ++ D+G +P+   +T++I + A AG+  EA ++   M+  G
Sbjct: 720 LIDGLGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLG 779

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAF 207
           V P+   Y+ LI GL      ++ ++  A     EM+ +G  PN  TY  +   F
Sbjct: 780 VNPDVQAYSALITGLI-----DSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGF 829



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 6/128 (4%)

Query: 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
            EAL    ++   G MPDVV    V+     A +  +A+ +F+ M + G  P   +Y  +
Sbjct: 2   EEALDCLKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTV 61

Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           I GLA+        + +A K+   M+  G  P+   +T +   F +A +      LL Q 
Sbjct: 62  ISGLASIDK-----MDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQ- 115

Query: 224 KAKGFVPD 231
             K F PD
Sbjct: 116 ALKRFRPD 123



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 66/161 (40%), Gaps = 23/161 (14%)

Query: 88  NNAVKMFDALSKDGLTHEALQLFAQIK--------DKGHM----------PDVVAHTAVI 129
           + A K F+++  +G   + +     I           GHM          PDV  +T+VI
Sbjct: 72  DEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALKRFRPDVFLYTSVI 131

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
             Y  AG      ++   MLA+G  P+A  Y VLI  L          + +A +    M 
Sbjct: 132 HGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGR-----VDEAYELFERMR 186

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
             G   +  T+  + EA     K+DEA  L ++M  +G+ P
Sbjct: 187 KSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEP 227


>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
 gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 94/179 (52%), Gaps = 9/179 (5%)

Query: 73  NLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           N  ++  KM  +G   + V    + D+L KD   +EA+  F+++ D+G  P+VV +++++
Sbjct: 194 NALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSIL 253

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
             + + GQ  EA  +F +M+   V PN  T+ +L+ GL         ++ +A++    M 
Sbjct: 254 HGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEG-----MILEARRVFEMMT 308

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFR 248
             G+ P+A TY+A+ + +    ++DEA+ L   M  KGF P  + V   LI+   +  R
Sbjct: 309 ENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVR-VYNILINGHCKSRR 366



 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 73/146 (50%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K G T  ALQL  ++++KG  PDVVA+  VI++     +  EA+  F  M+  G+ P
Sbjct: 185 GLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPP 244

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           N  TY+ ++ G       N   L +A     +M+G+ + PN  T+T + +   +   + E
Sbjct: 245 NVVTYSSILHGFC-----NLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILE 299

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           AR + + M   G  PD      AL+D
Sbjct: 300 ARRVFEMMTENGVEPDAYTY-SALMD 324



 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 88/192 (45%), Gaps = 25/192 (13%)

Query: 60  FKKVVDEE-PTDPRNLQEIFHKMRTEGLTNNAVKMF-------------------DALSK 99
           F ++VD+  P +      I H     G  N A  +F                   D L K
Sbjct: 234 FSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCK 293

Query: 100 DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYT 159
           +G+  EA ++F  + + G  PD   ++A+++ Y    Q  EA ++F  M+  G AP+   
Sbjct: 294 EGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRV 353

Query: 160 YAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGL 219
           Y +LI G        ++ L +A+  L EM  + + P+  TY+ + + F +A +   A+ L
Sbjct: 354 YNILING-----HCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKL 408

Query: 220 LQQMKAKGFVPD 231
            ++M + G +PD
Sbjct: 409 FKEMCSYGLLPD 420



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 80/172 (46%), Gaps = 8/172 (4%)

Query: 71  PRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P+  Q++F +M + GL  +++    + D L K G   EA +L   +++    P +  +  
Sbjct: 402 PQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIYNI 461

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           +I+   + G+ + A  +F  +   G+ P+  TY V+I GL      N     +A +   +
Sbjct: 462 LIQGMCNFGKLEAARELFSNLFVKGIQPSVVTYTVMISGLLKEGLSN-----EACEMFRK 516

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
           MV  G  PN+ TY    + F+R      A  L+++M  +GF  D    +  L
Sbjct: 517 MVVNGCLPNSCTYNVAIQGFLRNGDPSNAVRLIEEMVGRGFSADSSTFQMLL 568



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 89/189 (47%), Gaps = 18/189 (9%)

Query: 75  QEIFHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           Q++F  M  +G    +V++++ L     K    +EA  L +++ D+   PD V ++ +++
Sbjct: 336 QKLFDIMVGKGFAP-SVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQ 394

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
            +  AG+ + A ++F  M + G+ P++ TY++L+ GL          L +A + L  M  
Sbjct: 395 GFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGH-----LDEAFRLLKAMQE 449

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD--------EKAVKEALIDK 242
             + P+   Y  + +      K++ AR L   +  KG  P            +KE L ++
Sbjct: 450 SKIEPHICIYNILIQGMCNFGKLEAARELFSNLFVKGIQPSVVTYTVMISGLLKEGLSNE 509

Query: 243 RGQGFRGVI 251
             + FR ++
Sbjct: 510 ACEMFRKMV 518



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 5/113 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   +   G    A +LF+ +  KG  P VV +T +I      G   EA  +F +M+ +G
Sbjct: 462 LIQGMCNFGKLEAARELFSNLFVKGIQPSVVTYTVMISGLLKEGLSNEACEMFRKMVVNG 521

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFE 205
             PN+ TY V I+G     D +     +A + + EMVG+G   ++ T+  + +
Sbjct: 522 CLPNSCTYNVAIQGFLRNGDPS-----NAVRLIEEMVGRGFSADSSTFQMLLD 569



 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 7/142 (4%)

Query: 92  KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE--ALRVFMRML 149
           K+  +L K       + L  Q+      P+V   T +I     + +     A     +M 
Sbjct: 74  KLLGSLVKKKHYSTVISLCKQMDLSNIRPNVYTLTILINCLCHSNRDHVHFAFSALGKMF 133

Query: 150 ASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
             G+ P   T+  L+ GL +     AKI+ DA K   E+   G  P+  TYT + +   +
Sbjct: 134 KLGLQPTHVTFGTLLNGLCS----KAKII-DAVKLFDEIGKMGFAPSLITYTTIIKGLCK 188

Query: 210 AQKVDEARGLLQQMKAKGFVPD 231
                 A  LL++M+ KG  PD
Sbjct: 189 IGHTTNALQLLKKMEEKGCKPD 210


>gi|15225722|ref|NP_180822.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75160493|sp|Q8S8P6.1|PP180_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g32630
 gi|20197234|gb|AAM14987.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|330253613|gb|AEC08707.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 624

 Score = 92.8 bits (229), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 85/161 (52%), Gaps = 10/161 (6%)

Query: 80  KMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGK 139
           K+ T   TN    + D   K+G   EA +LF ++  KG  P+ + +  +I AY   G+ K
Sbjct: 466 KLSTVSYTN----LIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIK 521

Query: 140 EALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGT 199
           EA ++   M A+G+ P++YTY  LI G   A +     + +A +   EM  KG+  N+ T
Sbjct: 522 EARKLRANMEANGMDPDSYTYTSLIHGECIADN-----VDEAMRLFSEMGLKGLDQNSVT 576

Query: 200 YTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
           YT +     +A K DEA GL  +MK KG+  D K V  ALI
Sbjct: 577 YTVMISGLSKAGKSDEAFGLYDEMKRKGYTIDNK-VYTALI 616



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 80/165 (48%), Gaps = 8/165 (4%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D   ++ +   M+ +G+  N V    + +   K+G   +A +LF +++++G   DV  +T
Sbjct: 274 DFSGVEGVLKVMKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRERGIESDVHVYT 333

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
           ++I      G  K A  +F  +   G++P++YTY  LI G+    +     +G A+  + 
Sbjct: 334 SLISWNCRKGNMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGE-----MGAAEILMN 388

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           EM  KG+      +  + + + R   VDEA  +   M+ KGF  D
Sbjct: 389 EMQSKGVNITQVVFNTLIDGYCRKGMVDEASMIYDVMEQKGFQAD 433



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 70/174 (40%), Gaps = 24/174 (13%)

Query: 77  IFHKMRTEGLTNNAVKMFDALSKDGLTHE-------------------ALQLFAQIKDKG 117
           +F      G+    +++FD + K GL+ +                    L++F ++ D G
Sbjct: 160 VFRVYVDNGMFEEGLRVFDYMVKKGLSIDERSCIVFLVAAKKRRRIDLCLEIFRRMVDSG 219

Query: 118 HMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKI 177
               V + T V+E     G+ +++ ++       G+ P AYTY  +I       D     
Sbjct: 220 VKITVYSLTIVVEGLCRRGEVEKSKKLIKEFSVKGIKPEAYTYNTIINAYVKQRD----- 274

Query: 178 LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
               +  L  M   G+  N  TYT + E  V+  K+ +A  L  +M+ +G   D
Sbjct: 275 FSGVEGVLKVMKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRERGIESD 328



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/158 (22%), Positives = 73/158 (46%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F ++  +GL+ ++     + D + K G    A  L  +++ KG     V    +I+ Y 
Sbjct: 351 LFDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLIDGYC 410

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G   EA  ++  M   G   + +T   +     A+     K   +A+++L  M+  G+
Sbjct: 411 RKGMVDEASMIYDVMEQKGFQADVFTCNTI-----ASCFNRLKRYDEAKQWLFRMMEGGV 465

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + +  +YT + + + +   V+EA+ L  +M +KG  P+
Sbjct: 466 KLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPN 503


>gi|356524676|ref|XP_003530954.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g12700, mitochondrial-like
           [Glycine max]
          Length = 555

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 84/163 (51%), Gaps = 8/163 (4%)

Query: 72  RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R+  ++  KM  + +  N +    + D L KD L  +AL+LF+ +  +G + DVVA+ ++
Sbjct: 177 RDALQLLQKMEEDLVRPNLITYSTVIDGLCKDRLIADALRLFSLVTSRGILVDVVAYNSL 236

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I    S GQ +EA R+   M+   + P+ YT+ +L+  L          + +AQ     M
Sbjct: 237 IHGCCSVGQWREATRLLTMMVRGNINPDDYTFNILVDALCKEGR-----IVEAQGVFAVM 291

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + +G +P+  TY A+ E F  +  V EAR L  +M  +G  PD
Sbjct: 292 MKRGEKPDIVTYNALMEGFCLSNNVSEARELFNRMVKRGLEPD 334



 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 69/139 (49%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DAL K+G   EA  +FA +  +G  PD+V + A++E +  +    EA  +F RM+  G
Sbjct: 271 LVDALCKEGRIVEAQGVFAVMMKRGEKPDIVTYNALMEGFCLSNNVSEARELFNRMVKRG 330

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+   Y VLI G          ++ +A     E+  K + PN  TY ++ +   +  +
Sbjct: 331 LEPDVLNYNVLINGYC-----KIDMVDEAMVLFKEIRCKNLVPNLATYNSLIDGLCKLGR 385

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +   + L+ +M  +G  PD
Sbjct: 386 MSCVQELVDEMCDRGQSPD 404



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 73/158 (46%), Gaps = 9/158 (5%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F ++R + L  N      + D L K G      +L  ++ D+G  PD+V +   ++A+ 
Sbjct: 357 LFKEIRCKNLVPNLATYNSLIDGLCKLGRMSCVQELVDEMCDRGQSPDIVTYNIFLDAFC 416

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            +   ++A+ +F R +  G+ P+ Y Y V+++            L  A++ L  ++  G 
Sbjct: 417 KSKPYEKAISLF-RQIVQGIWPDFYMYDVIVENFCKGEK-----LKIAEEALQHLLIHGC 470

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            PN  TYT +  A  +    DEA  LL +M      PD
Sbjct: 471 CPNVRTYTIMINALCKDCSFDEAMTLLSKMDDNDCPPD 508



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 67/162 (41%), Gaps = 9/162 (5%)

Query: 74  LQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           +QE+  +M   G + + V      DA  K     +A+ LF QI  +G  PD   +  ++E
Sbjct: 389 VQELVDEMCDRGQSPDIVTYNIFLDAFCKSKPYEKAISLFRQIV-QGIWPDFYMYDVIVE 447

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
            +    + K A      +L  G  PN  TY ++I  L            +A   L +M  
Sbjct: 448 NFCKGEKLKIAEEALQHLLIHGCCPNVRTYTIMINALCKDCS-----FDEAMTLLSKMDD 502

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
               P+A T+  +  A     + D+A  L  +M  +G V DE
Sbjct: 503 NDCPPDAVTFETIIGALQERNETDKAEKLRLEMIERGLVNDE 544



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 5/133 (3%)

Query: 92  KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
           K+  A+ + G    A+ LF+Q+  KG  P +   T +I  Y        A  +   +L  
Sbjct: 60  KLLGAIVRMGHYPTAISLFSQLHSKGITPSIATLTILINCYCHQAHLSFAFSLLGTILKM 119

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           G  PN  T+  LI G          ++  A  + ++++ KG   +  +Y ++     +  
Sbjct: 120 GFQPNMVTFNTLINGFCING-----MVSKAMAFRLDLMAKGYPLDEFSYGSLINGLCKNG 174

Query: 212 KVDEARGLLQQMK 224
           +  +A  LLQ+M+
Sbjct: 175 QTRDALQLLQKME 187



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/140 (21%), Positives = 61/140 (43%), Gaps = 5/140 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +    +G+  +A+     +  KG+  D  ++ ++I      GQ ++AL++  +M    
Sbjct: 131 LINGFCINGMVSKAMAFRLDLMAKGYPLDEFSYGSLINGLCKNGQTRDALQLLQKMEEDL 190

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V PN  TY+ +I GL        +++ DA +    +  +G+  +   Y ++        +
Sbjct: 191 VRPNLITYSTVIDGLC-----KDRLIADALRLFSLVTSRGILVDVVAYNSLIHGCCSVGQ 245

Query: 213 VDEARGLLQQMKAKGFVPDE 232
             EA  LL  M      PD+
Sbjct: 246 WREATRLLTMMVRGNINPDD 265


>gi|357499781|ref|XP_003620179.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495194|gb|AES76397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 517

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 83/161 (51%), Gaps = 6/161 (3%)

Query: 74  LQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           L+E+ HK     +   +  + D L K G    AL+L  ++ D+G  P++V ++++++A  
Sbjct: 270 LKEMHHKQIIPNVVTYS-SLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALC 328

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
              Q   A+ +  +M   G+ PN YTY +LIKGL  +       L DA+K   +++ KG 
Sbjct: 329 KNHQVDNAIALLTQMKNQGIQPNMYTYTILIKGLCQSGK-----LEDARKVFEDLLVKGH 383

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
             N  TYT + + F      DEA  LL +M+  G +P+ K 
Sbjct: 384 NLNVYTYTVMIQGFCDKGLFDEALTLLSKMEDNGCIPNAKT 424



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 80/159 (50%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F+KM  E +  +      + D   K+G   EA  + A +  +G  P VV + ++++ Y
Sbjct: 163 DLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDGY 222

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               Q  +A  +F  M   GV+P+  +Y++LI G         K++ +A + L EM  K 
Sbjct: 223 FLVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCK-----IKMMDEAMELLKEMHHKQ 277

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + PN  TY+++ +   ++ K+  A  L+ +M  +G  P+
Sbjct: 278 IIPNVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPN 316



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 68/136 (50%), Gaps = 5/136 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DAL K+     A+ L  Q+K++G  P++  +T +I+    +G+ ++A +VF  +L  G
Sbjct: 323 ILDALCKNHQVDNAIALLTQMKNQGIQPNMYTYTILIKGLCQSGKLEDARKVFEDLLVKG 382

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
              N YTY V+I+G       +  +  +A   L +M   G  PNA TY  +  +  +  +
Sbjct: 383 HNLNVYTYTVMIQGFC-----DKGLFDEALTLLSKMEDNGCIPNAKTYEIIILSLFKKDE 437

Query: 213 VDEARGLLQQMKAKGF 228
            + A  LL +M    F
Sbjct: 438 NEMAEKLLCEMIETNF 453



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 67/148 (45%), Gaps = 13/148 (8%)

Query: 92  KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
           K+  +L K    H  L L  +++ +G  P++V    +I ++   G    A  V  ++L  
Sbjct: 67  KILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILINSFCQLGHIPSAFSVLTKILKM 126

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKI---------LGDAQKYLMEMVGKGMRPNAGTYTA 202
           G  PN  T   LIKGL      N KI         L DA     +M+ + + P+  T+T 
Sbjct: 127 GYKPNTITLNTLIKGLCL----NGKIHDKHCIVGKLKDAVDLFNKMILENINPDVYTFTI 182

Query: 203 VFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           + + F +  +V EA+ +L  M  +G  P
Sbjct: 183 LVDGFCKEGRVKEAKNVLAMMMIQGIKP 210



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 72/158 (45%), Gaps = 7/158 (4%)

Query: 84  EGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALR 143
           +GL  N  K+ D     G   +A+ LF ++  +   PDV   T +++ +   G+ KEA  
Sbjct: 140 KGLCLNG-KIHDKHCIVGKLKDAVDLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKN 198

Query: 144 VFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAV 203
           V   M+  G+ P   TY  L+ G       N      A+     M   G+ P+  +Y+ +
Sbjct: 199 VLAMMMIQGIKPGVVTYNSLMDGYFLVKQVNK-----AKSIFNTMAQLGVSPDIQSYSIL 253

Query: 204 FEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
              F + + +DEA  LL++M  K  +P+      +LID
Sbjct: 254 INGFCKIKMMDEAMELLKEMHHKQIIPNV-VTYSSLID 290



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 10/141 (7%)

Query: 54  PPPYDPFKKVVDEEPTDPR--NLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQ 108
           PP    +  ++D    + +  N   +  +M+ +G+  N      +   L + G   +A +
Sbjct: 314 PPNIVTYSSILDALCKNHQVDNAIALLTQMKNQGIQPNMYTYTILIKGLCQSGKLEDARK 373

Query: 109 LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
           +F  +  KGH  +V  +T +I+ +   G   EAL +  +M  +G  PNA TY ++I  L 
Sbjct: 374 VFEDLLVKGHNLNVYTYTVMIQGFCDKGLFDEALTLLSKMEDNGCIPNAKTYEIIILSLF 433

Query: 169 AAADGNAKILGDAQKYLMEMV 189
              +        A+K L EM+
Sbjct: 434 KKDENEM-----AEKLLCEMI 449


>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
 gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 81/148 (54%), Gaps = 7/148 (4%)

Query: 84  EGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALR 143
           + +T NA  + + L  +G   EA++LF ++  +GH P+V+++T VI      G    A+ 
Sbjct: 162 DAITFNA--LINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGLCKTGNTSMAVD 219

Query: 144 VFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAV 203
           VF +M  +G  PN  TY+ +I  L        +++ DA ++L EMV +G+ PN  TY ++
Sbjct: 220 VFKKMEQNGCKPNVVTYSTIIDSLCK-----DRLVNDAMEFLSEMVERGIPPNVFTYNSI 274

Query: 204 FEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              F    +++EA  L ++M  +  +P+
Sbjct: 275 VHGFCNLGQLNEATRLFKEMVGRDVMPN 302



 Score = 91.3 bits (225), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 90/189 (47%), Gaps = 33/189 (17%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F KM   G   N V    + D+L KD L ++A++  +++ ++G  P+V  + +++  +
Sbjct: 219 DVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGF 278

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA------------------------ 168
            + GQ  EA R+F  M+   V PN  T+ +L+ GL                         
Sbjct: 279 CNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDI 338

Query: 169 ----AAADGNA--KILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
               A  DG    +++ +A+K    M+ KG  P A +Y  +   + +++++DEA+ LL +
Sbjct: 339 STYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAE 398

Query: 223 MKAKGFVPD 231
           M  K   PD
Sbjct: 399 MYHKALNPD 407



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 83/169 (49%), Gaps = 9/169 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F++M   G   N +    + + L K G T  A+ +F +++  G  P+VV ++ +I++ 
Sbjct: 184 ELFNEMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSL 243

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
                  +A+     M+  G+ PN +TY  ++ G       N   L +A +   EMVG+ 
Sbjct: 244 CKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFC-----NLGQLNEATRLFKEMVGRD 298

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           + PN  T+T + +   +   V EAR + + M  KG  PD  +   AL+D
Sbjct: 299 VMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPD-ISTYNALMD 346



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 72/139 (51%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K+G+  EA  +F  + +KG  PD+  + A+++ Y       EA +VF  M+  G
Sbjct: 309 LVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKG 368

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            AP A++Y +LI G        ++ + +A+  L EM  K + P+  TY+ + +   +  +
Sbjct: 369 CAPGAHSYNILINGYCK-----SRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGR 423

Query: 213 VDEARGLLQQMKAKGFVPD 231
             EA  L ++M + G  P+
Sbjct: 424 PKEALNLFKEMCSYGPHPN 442



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 77/158 (48%), Gaps = 6/158 (3%)

Query: 74  LQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           L E++HK         +  M   L + G   EAL LF ++   G  P++V +  +++ + 
Sbjct: 396 LAEMYHKALNPDTVTYSTLM-QGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFC 454

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G   EAL++   M    + PN   Y +LI+G+  A       L  A++   ++ G G 
Sbjct: 455 KHGHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAGK-----LEVAKELFSKLFGDGT 509

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           RP+  TYT + +  ++    DEA  L ++M+  GF+P+
Sbjct: 510 RPDIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPN 547



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 76/161 (47%), Gaps = 8/161 (4%)

Query: 71  PRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P+    +F +M + G   N V    + D   K G   EAL+L   +K+K   P++V +T 
Sbjct: 424 PKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKLEPNIVHYTI 483

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           +IE    AG+ + A  +F ++   G  P+  TY V+IKGL         +  +A     +
Sbjct: 484 LIEGMFIAGKLEVAKELFSKLFGDGTRPDIRTYTVMIKGLLKEG-----LSDEAYDLFRK 538

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
           M   G  PN+ +Y  + + F++ Q    A  L+ +M  K F
Sbjct: 539 MEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEMVGKRF 579



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 69/152 (45%), Gaps = 13/152 (8%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA  L A++  K   PD V ++ +++     G+ KEAL +F  M + G  PN  TY +L+
Sbjct: 391 EAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILL 450

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            G           L +A K L  M  K + PN   YT + E    A K++ A+ L  ++ 
Sbjct: 451 DGFCKHGH-----LDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAGKLEVAKELFSKLF 505

Query: 225 AKGFVPDEKA--------VKEALIDKRGQGFR 248
             G  PD +         +KE L D+    FR
Sbjct: 506 GDGTRPDIRTYTVMIKGLLKEGLSDEAYDLFR 537



 Score = 43.5 bits (101), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 3/93 (3%)

Query: 75  QEIFHKMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+F K+  +G          M   L K+GL+ EA  LF +++D G +P+  ++  +I+ 
Sbjct: 498 KELFSKLFGDGTRPDIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQG 557

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +        A+R+   M+    + N  T+ +L+
Sbjct: 558 FLQNQDSSTAIRLIDEMVGKRFSVNLSTFQMLL 590


>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Cucumis sativus]
          Length = 786

 Score = 92.4 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 51/164 (31%), Positives = 87/164 (53%), Gaps = 9/164 (5%)

Query: 71  PRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           PR   E F +M+  GL  N V    + DA  K+G+   A++LF  ++  G +P+   +T+
Sbjct: 376 PRAF-EYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTS 434

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           +I+A   AG   EA ++   ML +GV  N  TY  L+ GL  A       + +A++    
Sbjct: 435 LIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGR-----MIEAEEVFRS 489

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           M+  G+ PN   YTA+   +++A+++++A  +L+QM      PD
Sbjct: 490 MLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPD 533



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 65/255 (25%), Positives = 113/255 (44%), Gaps = 48/255 (18%)

Query: 28  NATLQRSLSSSSDQPTKKYVN--TKSKLPPPYDPFKKVVDE--EPTDPRNLQEIFHKMRT 83
           N  L R   S + Q  +K+ N    + + P    +  ++D   +  D  N + +F +MR 
Sbjct: 258 NFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMRE 317

Query: 84  EGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPD------------------- 121
            GL+ + V    + D   K G   E   LF ++KD G +PD                   
Sbjct: 318 MGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPR 377

Query: 122 ----------------VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
                           VV ++ +I+A+   G  + A+++F+ M  +G+ PN +TY  LI 
Sbjct: 378 AFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLID 437

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
                A+  A  L +A K L +M+  G++ N  TYTA+ +   +A ++ EA  + + M  
Sbjct: 438 -----ANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLK 492

Query: 226 KGFVPDEKAVKEALI 240
            G  P+++ V  AL+
Sbjct: 493 DGISPNQQ-VYTALV 506



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 44/137 (32%), Positives = 67/137 (48%), Gaps = 6/137 (4%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           E   +  ++K +G   + V  T +I+AY  AG+  +AL  F  M   GV     TY VLI
Sbjct: 552 ETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLI 611

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            GL  A      I+  A  Y   M+  G++PN   YT++ +   +   ++ A+ L  +M+
Sbjct: 612 DGLCKAG-----IVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQ 666

Query: 225 AKGFVPDEKAVKEALID 241
            +G  PD  A   ALID
Sbjct: 667 CRGMTPDITAFT-ALID 682



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/158 (29%), Positives = 79/158 (50%), Gaps = 11/158 (6%)

Query: 72  RNLQE---IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAH 125
           R L+E   I  +M++ G++ N V    + DA  K G + +AL  F +++D G    +V +
Sbjct: 548 RKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTY 607

Query: 126 TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185
             +I+    AG  + A+  F RML+ G+ PN   Y  LI GL          +  A+K  
Sbjct: 608 CVLIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLC-----KNNCIESAKKLF 662

Query: 186 MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
            EM  +GM P+   +TA+ +  ++   + EA  L+ +M
Sbjct: 663 DEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRM 700



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 72/139 (51%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +F    + GL  EA + F+++++   +P   +   ++   + +G G+   + F  M+ +G
Sbjct: 225 LFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDMIGAG 284

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +AP+ +TY V+I  L    D     L ++++  ++M   G+ P+  TY ++ + + +   
Sbjct: 285 IAPSVFTYNVMIDYLCKEGD-----LENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGS 339

Query: 213 VDEARGLLQQMKAKGFVPD 231
           ++E   L  +MK  G VPD
Sbjct: 340 LEEVASLFNEMKDVGCVPD 358



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 77/164 (46%), Gaps = 8/164 (4%)

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           + F +M + GL  N      + D L K+     A +LF +++ +G  PD+ A TA+I+  
Sbjct: 625 DYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPDITAFTALIDGN 684

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G  +EAL +  RM    +  + + Y  L+ G +   +     L  A+K+  EM+ KG
Sbjct: 685 LKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGE-----LHQARKFFNEMIEKG 739

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK 236
           + P       +   + +  ++DEA  L  +M+  G + +   ++
Sbjct: 740 ILPEEVLCICLLREYYKRGQLDEAIELKNEMERMGLITESATMQ 783


>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
 gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
          Length = 725

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/141 (34%), Positives = 78/141 (55%), Gaps = 9/141 (6%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D+L K G   +A +L   +  KG  P+VV +++++     AG+  EA  +  RM  SG
Sbjct: 226 IVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSG 285

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKI--LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
            +PN  TY  +I       DG+ K+  + +A   L EMV  G +PN  TYT + +AF + 
Sbjct: 286 CSPNIVTYNTII-------DGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKC 338

Query: 211 QKVDEARGLLQQMKAKGFVPD 231
            K ++A GL++ M  KG+VP+
Sbjct: 339 GKAEDAIGLVEVMVEKGYVPN 359



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 64/136 (47%), Gaps = 5/136 (3%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           AL L  Q+  +G  PDVV++T VI       Q  EA RV  +M+  G  PN  TY  L+ 
Sbjct: 98  ALWLLEQMVMRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVD 157

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G     D     L  A + + +M  +G RPNA TY  +       +K+D A  L ++M+ 
Sbjct: 158 GFCRVGD-----LDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEE 212

Query: 226 KGFVPDEKAVKEALID 241
            G  P +      ++D
Sbjct: 213 SGSCPPDVFTYSTIVD 228



 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 80/175 (45%), Gaps = 9/175 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +M   G + N V    + D   K G   EA  L  ++ D G  P+VV +T +++A+ 
Sbjct: 277 LLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFC 336

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G+ ++A+ +   M+  G  PN +TY  L+       +     +  A + L  M+ KG 
Sbjct: 337 KCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDE-----VERACQLLSSMIQKGC 391

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFR 248
            PN  +Y  V     +A KV E   LL+QM +   VPD       +ID   + +R
Sbjct: 392 VPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPD-IVTFNTIIDAMCKTYR 445



 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 81/184 (44%), Gaps = 10/184 (5%)

Query: 53  LPPPYDPFKKVVDEEPTDPR--NLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEAL 107
            PP    +  +VD      +  +   +   M ++G + N V    +   L K G   EA 
Sbjct: 216 CPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEAT 275

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
            L  ++   G  P++V +  +I+ +   G+  EA  +   M+  G  PN  TY VL+   
Sbjct: 276 ALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAF 335

Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
                G A+   DA   +  MV KG  PN  TY ++ + F +  +V+ A  LL  M  KG
Sbjct: 336 CKC--GKAE---DAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKG 390

Query: 228 FVPD 231
            VP+
Sbjct: 391 CVPN 394



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 81/160 (50%), Gaps = 9/160 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQI-KDKGHMPDVVAHTAVIEA 131
           E+F+ ++  G T N V    +   L K     +A  L  ++ + +G  PD++ +  VI+ 
Sbjct: 451 ELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDG 510

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              + +   A ++F++ML+ G+AP+  TY+++I  L        + + +A   L  M+  
Sbjct: 511 LCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLC-----KWRFMDEANNVLELMLKN 565

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G  P A TY  + + F +   +D+A  +LQ + +KG  PD
Sbjct: 566 GFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPD 605



 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 72/139 (51%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M + LSK     +A++L  ++ D G  P+V ++  V+  +  A + + AL +  +M+  G
Sbjct: 50  MINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRG 109

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  +Y  +I GL          + +A + + +M+ +G +PN  TY  + + F R   
Sbjct: 110 CPPDVVSYTTVINGLCKLDQ-----VDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGD 164

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +D A  L+++M  +G+ P+
Sbjct: 165 LDGAVELVRKMTERGYRPN 183



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 70/161 (43%), Gaps = 9/161 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++   M  +G   N V    +   L K    HE + L  Q+     +PD+V    +I+A 
Sbjct: 381 QLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAM 440

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK- 191
               +   A  +F  +  SG  PN  TY  L+ GL       ++    A+  L EM  K 
Sbjct: 441 CKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLC-----KSRRFDQAEYLLREMTRKQ 495

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           G  P+  TY  V +   ++++VD A  L  QM + G  PD+
Sbjct: 496 GCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDD 536



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 72/170 (42%), Gaps = 31/170 (18%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K     EA ++  ++  +G  P+V+ +  +++ +   G    A+ +  +M   G
Sbjct: 120 VINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERG 179

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKI-------------------------------LGDA 181
             PNA TY  ++ GL +    ++ +                               + DA
Sbjct: 180 YRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDA 239

Query: 182 QKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            + +  MV KG  PN  TY+++     +A K+DEA  LLQ+M   G  P+
Sbjct: 240 CRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPN 289



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 66/136 (48%), Gaps = 6/136 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L   G   +A+  F ++  K   PD V +  +I   + + +  +A+R+   M+ +G AP
Sbjct: 19  GLCDAGQCSDAVLHFREMS-KTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAP 77

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           N ++Y  ++ G        A  + +A   L +MV +G  P+  +YT V     +  +VDE
Sbjct: 78  NVFSYNTVLHGFC-----KANRVENALWLLEQMVMRGCPPDVVSYTTVINGLCKLDQVDE 132

Query: 216 ARGLLQQMKAKGFVPD 231
           A  ++ +M  +G  P+
Sbjct: 133 ACRVMDKMIQRGCQPN 148



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 77/174 (44%), Gaps = 11/174 (6%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F +M ++GL  + V    +  +L K     EA  +   +   G  P  + +  +I+ +
Sbjct: 522 KLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGF 581

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G   +AL +   +L+ G  P+  T+++ I  L+         L  A + L  M+  G
Sbjct: 582 CKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGR-----LRQAGELLETMLRAG 636

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEA---LIDKR 243
           + P+  TY  + + F  A + ++A  L + M+  G  PD          L+DK+
Sbjct: 637 LVPDTVTYNTLLKGFCDASRTEDAVDLFEVMRQCGCEPDNATYTTLVGHLVDKK 690


>gi|224131362|ref|XP_002328520.1| predicted protein [Populus trichocarpa]
 gi|222838235|gb|EEE76600.1| predicted protein [Populus trichocarpa]
          Length = 501

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 80/158 (50%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  KM   G+  ++V    + + L  +G   EA++LF ++  +  MP+ V  T +++   
Sbjct: 143 VLSKMFKLGIQPDSVTFTTLINGLCNEGRIKEAVELFNEMAGRDAMPNTVTFTILVDVLC 202

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G   EA  VF  M   GV PN YTY  L+ G     + N     DA K    MVGKG 
Sbjct: 203 KKGMVSEARCVFETMTEKGVEPNIYTYNALMNGYCLRLEMN-----DASKVFEIMVGKGC 257

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            P+  +Y+ +   + +++++DEA+ LL QM  K  +P+
Sbjct: 258 APSVHSYSILINGYCKSRRIDEAKALLTQMSEKELIPN 295



 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 8/168 (4%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           QE+F KM + G+  N      + D L K G   EAL+L   ++++   PD+V +  +I+ 
Sbjct: 316 QELFKKMCSSGMLPNLRTYSILLDGLCKHGHLEEALKLLTSMQERKLEPDIVLYNILIQG 375

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              AG+ + A  +F ++ A+G+ P+  TY ++IKGL      +     +A K   +M   
Sbjct: 376 MFIAGKLEVAKELFSKLFANGIRPSVRTYNIMIKGLLKEGLSD-----EAYKLFRKMEDD 430

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
           G  P++ +Y  + + F++ Q    A  L+ +M  + F  D    K  L
Sbjct: 431 GFLPDSCSYNVIIQGFLQNQDPSTAIQLIDEMVGRRFSADSSTFKMLL 478



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 79/194 (40%), Gaps = 43/194 (22%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F++M       N V    + D L K G+  EA  +F  + +KG  P++  + A++  Y
Sbjct: 177 ELFNEMAGRDAMPNTVTFTILVDVLCKKGMVSEARCVFETMTEKGVEPNIYTYNALMNGY 236

Query: 133 ASAGQGKEALRVFMRMLASGVAP-----------------------------------NA 157
               +  +A +VF  M+  G AP                                   N 
Sbjct: 237 CLRLEMNDASKVFEIMVGKGCAPSVHSYSILINGYCKSRRIDEAKALLTQMSEKELIPNT 296

Query: 158 YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
            TY  L++GL  A+      L +AQ+   +M   GM PN  TY+ + +   +   ++EA 
Sbjct: 297 VTYNTLMQGLCHASS-----LLEAQELFKKMCSSGMLPNLRTYSILLDGLCKHGHLEEAL 351

Query: 218 GLLQQMKAKGFVPD 231
            LL  M+ +   PD
Sbjct: 352 KLLTSMQERKLEPD 365



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 71/152 (46%), Gaps = 13/152 (8%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA  L  Q+ +K  +P+ V +  +++    A    EA  +F +M +SG+ PN  TY++L+
Sbjct: 279 EAKALLTQMSEKELIPNTVTYNTLMQGLCHASSLLEAQELFKKMCSSGMLPNLRTYSILL 338

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            GL          L +A K L  M  + + P+   Y  + +    A K++ A+ L  ++ 
Sbjct: 339 DGLCKHGH-----LEEALKLLTSMQERKLEPDIVLYNILIQGMFIAGKLEVAKELFSKLF 393

Query: 225 AKGFVPDEKA--------VKEALIDKRGQGFR 248
           A G  P  +         +KE L D+  + FR
Sbjct: 394 ANGIRPSVRTYNIMIKGLLKEGLSDEAYKLFR 425


>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
 gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 87/162 (53%), Gaps = 8/162 (4%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++  KM  +G   N V    + D+L KD L  EA++  +++ ++G  P+VV +++++  +
Sbjct: 103 QLLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGF 162

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
            + G+  EA  +F +M+   V P+  T+ +L+ GL+        ++ +AQ     M+ KG
Sbjct: 163 CNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSKEG-----MILEAQCVFETMIEKG 217

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
           + PN  TY A+ + +    ++DEA+ L   M  KG  P  ++
Sbjct: 218 VEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRS 259



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 79/139 (56%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D LSK+G+  EA  +F  + +KG  P+V  + A+++ Y S  Q  EA ++F  M+  G
Sbjct: 193 LVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKG 252

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            AP+  +Y +LIKG   +       + +A+  L EM  K + P+  TY+ + + F +  +
Sbjct: 253 CAPSVRSYNILIKGHCKSGR-----IDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGR 307

Query: 213 VDEARGLLQQMKAKGFVPD 231
             +A+ LL++M++ G +PD
Sbjct: 308 PQDAQKLLEEMRSYGLLPD 326



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 71/139 (51%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + LS      +A++LF ++   G+ PDV+ ++ +I      G    A+++  +M   G
Sbjct: 53  LLNGLSSKAKIIDAVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKG 112

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN   Y+ +I  L        K++ +A ++L EMV +G+ PN  TY+++   F    +
Sbjct: 113 CKPNVVVYSTIIDSLC-----KDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGR 167

Query: 213 VDEARGLLQQMKAKGFVPD 231
            +EA  L +QM  +  +PD
Sbjct: 168 SNEATSLFKQMVERNVMPD 186



 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 81/169 (47%), Gaps = 8/169 (4%)

Query: 71  PRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P++ Q++  +MR+ GL  + +    + D L K G   EA +L   +++    P++  +T 
Sbjct: 308 PQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTI 367

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           +I+   + G+ + A  +F  +   G+ P+  TY V+I GL      N     +A +   +
Sbjct: 368 LIQGMCNFGKLEAARELFSNLFVKGIQPDVVTYTVMISGLLKGGLSN-----EACELFRD 422

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK 236
           M   G  PN+ TY  + + F+R      A  L+++M  +GF  D    +
Sbjct: 423 MAVHGCLPNSCTYNVIIQGFLRNGDTSNAGRLIEEMVGRGFSADSSTFQ 471



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 74/158 (46%), Gaps = 6/158 (3%)

Query: 74  LQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           L E+ HK  T      +  M     +DG   +A +L  +++  G +PD++ ++ V++   
Sbjct: 280 LAEMSHKALTPDTVTYSTLM-KGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLC 338

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G   EA  +   M  S + PN + Y +LI+G+      N   L  A++    +  KG+
Sbjct: 339 KQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMC-----NFGKLEAARELFSNLFVKGI 393

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +P+  TYT +    ++    +EA  L + M   G +P+
Sbjct: 394 QPDVVTYTVMISGLLKGGLSNEACELFRDMAVHGCLPN 431



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 77/161 (47%), Gaps = 10/161 (6%)

Query: 75  QEIFHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           Q++F+ M  +G    +V+ ++ L     K G   EA  L A++  K   PD V ++ +++
Sbjct: 242 QKLFNIMVRKGCAP-SVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMK 300

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
            +   G+ ++A ++   M + G+ P+  TY++++ GL          L +A + L  M  
Sbjct: 301 GFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGH-----LDEAFELLKAMQE 355

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             + PN   YT + +      K++ AR L   +  KG  PD
Sbjct: 356 SKIEPNIFIYTILIQGMCNFGKLEAARELFSNLFVKGIQPD 396



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 57/124 (45%), Gaps = 8/124 (6%)

Query: 120 PDVVAHTAVIEAYASAGQGKE--ALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKI 177
           PDV   T +I  +  +       A  V   M   G+ PN  T++ L+ GL++     AKI
Sbjct: 8   PDVYTLTILINCFCHSNHDHFHFAFSVLGNMFKLGLQPNHVTFSTLLNGLSS----KAKI 63

Query: 178 LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKE 237
           + DA K   EMV  G  P+  TY+ +     +      A  LL++M+ KG  P+   V  
Sbjct: 64  I-DAVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPN-VVVYS 121

Query: 238 ALID 241
            +ID
Sbjct: 122 TIID 125



 Score = 44.7 bits (104), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 3/92 (3%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+F  +  +G+  + V    M   L K GL++EA +LF  +   G +P+   +  +I+ 
Sbjct: 382 RELFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDMAVHGCLPNSCTYNVIIQG 441

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
           +   G    A R+   M+  G + ++ T+ +L
Sbjct: 442 FLRNGDTSNAGRLIEEMVGRGFSADSSTFQML 473


>gi|75191658|sp|Q9M9X9.1|PPR18_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g06710, mitochondrial; Flags: Precursor
 gi|7523709|gb|AAF63148.1|AC011001_18 Hypothetical protein [Arabidopsis thaliana]
          Length = 987

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 58/179 (32%), Positives = 89/179 (49%), Gaps = 15/179 (8%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M+  GL  +      M D+  K GL  +A + F ++++ G  P+VV +TA+I AY 
Sbjct: 505 LFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYL 564

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD-----------GNAKILGDAQ 182
            A +   A  +F  ML+ G  PN  TY+ LI G   A               +K + D  
Sbjct: 565 KAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVD 624

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
            Y  +      RPN  TY A+ + F ++ +V+EAR LL  M  +G  P++  V +ALID
Sbjct: 625 MYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQ-IVYDALID 682



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 110/246 (44%), Gaps = 26/246 (10%)

Query: 14  PSPKRSLRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKKVVDEEPTDPRN 73
           PSPK    I N+ V+A       S + +  KK V  K    P Y  +  ++     D  +
Sbjct: 370 PSPK----IFNSLVHAYCTSGDHSYAYKLLKKMV--KCGHMPGYVVYNILIGSICGDKDS 423

Query: 74  L--------QEIFHKMRTEGLTNNAVKMFD---ALSKDGLTHEALQLFAQIKDKGHMPDV 122
           L        ++ + +M   G+  N + +      L   G   +A  +  ++  +G +PD 
Sbjct: 424 LNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDT 483

Query: 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQ 182
             ++ V+    +A + + A  +F  M   G+  + YTY +++     A      ++  A+
Sbjct: 484 STYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAG-----LIEQAR 538

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID- 241
           K+  EM   G  PN  TYTA+  A+++A+KV  A  L + M ++G +P+      ALID 
Sbjct: 539 KWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPN-IVTYSALIDG 597

Query: 242 --KRGQ 245
             K GQ
Sbjct: 598 HCKAGQ 603



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 43/160 (26%), Positives = 76/160 (47%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +++   M  EG   N +    + D L K G   EA ++  ++ + G    +  ++++I+ 
Sbjct: 659 RKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDR 718

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y    +   A +V  +ML +  APN   Y  +I GL      +     +A K +  M  K
Sbjct: 719 YFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTD-----EAYKLMQMMEEK 773

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G +PN  TYTA+ + F    K++    LL++M +KG  P+
Sbjct: 774 GCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPN 813



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 73/158 (46%), Gaps = 10/158 (6%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++  KM       N V   +M D L K G T EA +L   +++KG  P+VV +TA+I+ +
Sbjct: 730 KVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGF 789

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+ +  L +  RM + GVAPN  TY VLI       +G   +   A   L EM    
Sbjct: 790 GMIGKIETCLELLERMGSKGVAPNYVTYRVLID--HCCKNGALDV---AHNLLEEMKQTH 844

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
              +   Y  V E F   ++  E+ GLL ++      P
Sbjct: 845 WPTHTAGYRKVIEGF--NKEFIESLGLLDEIGQDDTAP 880



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 5/145 (3%)

Query: 87  TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFM 146
           T+   K+ + L        A  LF ++K  G + DV  +T +++++  AG  ++A + F 
Sbjct: 483 TSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFN 542

Query: 147 RMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEA 206
            M   G  PN  TY  LI          AK +  A +    M+ +G  PN  TY+A+ + 
Sbjct: 543 EMREVGCTPNVVTYTALIHAYL-----KAKKVSYANELFETMLSEGCLPNIVTYSALIDG 597

Query: 207 FVRAQKVDEARGLLQQMKAKGFVPD 231
             +A +V++A  + ++M     VPD
Sbjct: 598 HCKAGQVEKACQIFERMCGSKDVPD 622



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 43/175 (24%), Positives = 72/175 (41%), Gaps = 24/175 (13%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLF----------------AQIKDK 116
           E+F  M +EG   N V    + D   K G   +A Q+F                 Q  D 
Sbjct: 574 ELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDN 633

Query: 117 GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK 176
              P+VV + A+++ +  + + +EA ++   M   G  PN   Y  LI GL         
Sbjct: 634 SERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGK---- 689

Query: 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            L +AQ+   EM   G      TY+++ + + + ++ D A  +L +M      P+
Sbjct: 690 -LDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPN 743



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 12/151 (7%)

Query: 81  MRTEGLTNNAVKMFD-ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGK 139
           +R +G T   ++ F  +L K G   EAL L   ++ +  +PD V +T +I     A   +
Sbjct: 266 LRMDGFT---LRCFAYSLCKVGKWREALTL---VETENFVPDTVFYTKLISGLCEASLFE 319

Query: 140 EALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGT 199
           EA+    RM A+   PN  TY+ L+ G       N K LG  ++ L  M+ +G  P+   
Sbjct: 320 EAMDFLNRMRATSCLPNVVTYSTLLCGCL-----NKKQLGRCKRVLNMMMMEGCYPSPKI 374

Query: 200 YTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           + ++  A+  +     A  LL++M   G +P
Sbjct: 375 FNSLVHAYCTSGDHSYAYKLLKKMVKCGHMP 405



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 1/125 (0%)

Query: 116 KGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADG-N 174
           +G  P      +++ AY ++G    A ++  +M+  G  P    Y +LI  +    D  N
Sbjct: 366 EGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLN 425

Query: 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
             +L  A+K   EM+  G+  N    ++       A K ++A  ++++M  +GF+PD   
Sbjct: 426 CDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTST 485

Query: 235 VKEAL 239
             + L
Sbjct: 486 YSKVL 490



 Score = 39.3 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 20/168 (11%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA----V 128
           E+  +M ++G+  N V    + D   K+G    A  L  ++K + H P    HTA    V
Sbjct: 800 ELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMK-QTHWP---THTAGYRKV 855

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA--DGNAKILGDAQKYLM 186
           IE +    +  E+L +   +     AP    Y +LI  L  A   +   ++L +   +  
Sbjct: 856 IEGFNK--EFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSA 913

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
            +V       + TY ++ E+   A KV+ A  L  +M  KG +P+ ++
Sbjct: 914 TLVDY-----SSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQS 956


>gi|334182346|ref|NP_172156.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332189906|gb|AEE28027.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 997

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 58/179 (32%), Positives = 89/179 (49%), Gaps = 15/179 (8%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M+  GL  +      M D+  K GL  +A + F ++++ G  P+VV +TA+I AY 
Sbjct: 505 LFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYL 564

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD-----------GNAKILGDAQ 182
            A +   A  +F  ML+ G  PN  TY+ LI G   A               +K + D  
Sbjct: 565 KAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVD 624

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
            Y  +      RPN  TY A+ + F ++ +V+EAR LL  M  +G  P++  V +ALID
Sbjct: 625 MYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQ-IVYDALID 682



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 110/246 (44%), Gaps = 26/246 (10%)

Query: 14  PSPKRSLRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKKVVDEEPTDPRN 73
           PSPK    I N+ V+A       S + +  KK V  K    P Y  +  ++     D  +
Sbjct: 370 PSPK----IFNSLVHAYCTSGDHSYAYKLLKKMV--KCGHMPGYVVYNILIGSICGDKDS 423

Query: 74  L--------QEIFHKMRTEGLTNNAVKMFD---ALSKDGLTHEALQLFAQIKDKGHMPDV 122
           L        ++ + +M   G+  N + +      L   G   +A  +  ++  +G +PD 
Sbjct: 424 LNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDT 483

Query: 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQ 182
             ++ V+    +A + + A  +F  M   G+  + YTY +++     A      ++  A+
Sbjct: 484 STYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAG-----LIEQAR 538

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID- 241
           K+  EM   G  PN  TYTA+  A+++A+KV  A  L + M ++G +P+      ALID 
Sbjct: 539 KWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPN-IVTYSALIDG 597

Query: 242 --KRGQ 245
             K GQ
Sbjct: 598 HCKAGQ 603



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 43/160 (26%), Positives = 76/160 (47%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +++   M  EG   N +    + D L K G   EA ++  ++ + G    +  ++++I+ 
Sbjct: 659 RKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDR 718

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y    +   A +V  +ML +  APN   Y  +I GL      +     +A K +  M  K
Sbjct: 719 YFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTD-----EAYKLMQMMEEK 773

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G +PN  TYTA+ + F    K++    LL++M +KG  P+
Sbjct: 774 GCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPN 813



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 73/158 (46%), Gaps = 10/158 (6%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++  KM       N V   +M D L K G T EA +L   +++KG  P+VV +TA+I+ +
Sbjct: 730 KVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGF 789

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+ +  L +  RM + GVAPN  TY VLI       +G   +   A   L EM    
Sbjct: 790 GMIGKIETCLELLERMGSKGVAPNYVTYRVLID--HCCKNGALDV---AHNLLEEMKQTH 844

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
              +   Y  V E F   ++  E+ GLL ++      P
Sbjct: 845 WPTHTAGYRKVIEGF--NKEFIESLGLLDEIGQDDTAP 880



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 5/145 (3%)

Query: 87  TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFM 146
           T+   K+ + L        A  LF ++K  G + DV  +T +++++  AG  ++A + F 
Sbjct: 483 TSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFN 542

Query: 147 RMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEA 206
            M   G  PN  TY  LI          AK +  A +    M+ +G  PN  TY+A+ + 
Sbjct: 543 EMREVGCTPNVVTYTALIHAYL-----KAKKVSYANELFETMLSEGCLPNIVTYSALIDG 597

Query: 207 FVRAQKVDEARGLLQQMKAKGFVPD 231
             +A +V++A  + ++M     VPD
Sbjct: 598 HCKAGQVEKACQIFERMCGSKDVPD 622



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 43/175 (24%), Positives = 72/175 (41%), Gaps = 24/175 (13%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLF----------------AQIKDK 116
           E+F  M +EG   N V    + D   K G   +A Q+F                 Q  D 
Sbjct: 574 ELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDN 633

Query: 117 GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK 176
              P+VV + A+++ +  + + +EA ++   M   G  PN   Y  LI GL         
Sbjct: 634 SERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGK---- 689

Query: 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            L +AQ+   EM   G      TY+++ + + + ++ D A  +L +M      P+
Sbjct: 690 -LDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPN 743



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 12/151 (7%)

Query: 81  MRTEGLTNNAVKMFD-ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGK 139
           +R +G T   ++ F  +L K G   EAL L   ++ +  +PD V +T +I     A   +
Sbjct: 266 LRMDGFT---LRCFAYSLCKVGKWREALTL---VETENFVPDTVFYTKLISGLCEASLFE 319

Query: 140 EALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGT 199
           EA+    RM A+   PN  TY+ L+ G       N K LG  ++ L  M+ +G  P+   
Sbjct: 320 EAMDFLNRMRATSCLPNVVTYSTLLCGCL-----NKKQLGRCKRVLNMMMMEGCYPSPKI 374

Query: 200 YTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           + ++  A+  +     A  LL++M   G +P
Sbjct: 375 FNSLVHAYCTSGDHSYAYKLLKKMVKCGHMP 405



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 1/125 (0%)

Query: 116 KGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADG-N 174
           +G  P      +++ AY ++G    A ++  +M+  G  P    Y +LI  +    D  N
Sbjct: 366 EGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLN 425

Query: 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
             +L  A+K   EM+  G+  N    ++       A K ++A  ++++M  +GF+PD   
Sbjct: 426 CDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTST 485

Query: 235 VKEAL 239
             + L
Sbjct: 486 YSKVL 490



 Score = 39.3 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 20/168 (11%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA----V 128
           E+  +M ++G+  N V    + D   K+G    A  L  ++K + H P    HTA    V
Sbjct: 800 ELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMK-QTHWP---THTAGYRKV 855

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA--DGNAKILGDAQKYLM 186
           IE +    +  E+L +   +     AP    Y +LI  L  A   +   ++L +   +  
Sbjct: 856 IEGFNK--EFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSA 913

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
            +V       + TY ++ E+   A KV+ A  L  +M  KG +P+ ++
Sbjct: 914 TLVDY-----SSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQS 956


>gi|55709857|gb|AAV58825.1| hypothetical protein [Arabidopsis thaliana]
          Length = 946

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 58/179 (32%), Positives = 89/179 (49%), Gaps = 15/179 (8%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M+  GL  +      M D+  K GL  +A + F ++++ G  P+VV +TA+I AY 
Sbjct: 464 LFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYL 523

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD-----------GNAKILGDAQ 182
            A +   A  +F  ML+ G  PN  TY+ LI G   A               +K + D  
Sbjct: 524 KAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVD 583

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
            Y  +      RPN  TY A+ + F ++ +V+EAR LL  M  +G  P++  V +ALID
Sbjct: 584 MYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQ-IVYDALID 641



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 110/246 (44%), Gaps = 26/246 (10%)

Query: 14  PSPKRSLRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKKVVDEEPTDPRN 73
           PSPK    I N+ V+A       S + +  KK V  K    P Y  +  ++     D  +
Sbjct: 329 PSPK----IFNSLVHAYCTSGDHSYAYKLLKKMV--KCGHMPGYVVYNILIGSICGDKDS 382

Query: 74  L--------QEIFHKMRTEGLTNNAVKMFD---ALSKDGLTHEALQLFAQIKDKGHMPDV 122
           L        ++ + +M   G+  N + +      L   G   +A  +  ++  +G +PD 
Sbjct: 383 LNFDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDT 442

Query: 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQ 182
             ++ V+    +A + + A  +F  M   G+  + YTY +++     A      ++  A+
Sbjct: 443 STYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAG-----LIEQAR 497

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID- 241
           K+  EM   G  PN  TYTA+  A+++A+KV  A  L + M ++G +P+      ALID 
Sbjct: 498 KWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPN-IVTYSALIDG 556

Query: 242 --KRGQ 245
             K GQ
Sbjct: 557 HCKAGQ 562



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 43/160 (26%), Positives = 76/160 (47%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +++   M  EG   N +    + D L K G   EA ++  ++ + G    +  ++++I+ 
Sbjct: 618 RKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDR 677

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y    +   A +V  +ML +  APN   Y  +I GL      +     +A K +  M  K
Sbjct: 678 YFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTD-----EAYKLMQMMEEK 732

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G +PN  TYTA+ + F    K++    LL++M +KG  P+
Sbjct: 733 GCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPN 772



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 73/158 (46%), Gaps = 10/158 (6%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++  KM       N V   +M D L K G T EA +L   +++KG  P+VV +TA+I+ +
Sbjct: 689 KVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGF 748

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+ +  L +  RM + GVAPN  TY VLI       +G   +   A   L EM    
Sbjct: 749 GMIGKIETCLELLERMGSKGVAPNYVTYRVLID--HCCKNGALDV---AHNLLEEMKQTH 803

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
              +   Y  V E F   ++  E+ GLL ++      P
Sbjct: 804 WPTHTAGYRKVIEGF--NKEFIESLGLLDEIGQDDTAP 839



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 5/145 (3%)

Query: 87  TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFM 146
           T+   K+ + L        A  LF ++K  G + DV  +T +++++  AG  ++A + F 
Sbjct: 442 TSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFN 501

Query: 147 RMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEA 206
            M   G  PN  TY  LI          AK +  A +    M+ +G  PN  TY+A+ + 
Sbjct: 502 EMREVGCTPNVVTYTALIHAYL-----KAKKVSYANELFETMLSEGCLPNIVTYSALIDG 556

Query: 207 FVRAQKVDEARGLLQQMKAKGFVPD 231
             +A +V++A  + ++M     VPD
Sbjct: 557 HCKAGQVEKACQIFERMCGSKDVPD 581



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 43/175 (24%), Positives = 72/175 (41%), Gaps = 24/175 (13%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLF----------------AQIKDK 116
           E+F  M +EG   N V    + D   K G   +A Q+F                 Q  D 
Sbjct: 533 ELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDN 592

Query: 117 GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK 176
              P+VV + A+++ +  + + +EA ++   M   G  PN   Y  LI GL         
Sbjct: 593 SERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGK---- 648

Query: 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            L +AQ+   EM   G      TY+++ + + + ++ D A  +L +M      P+
Sbjct: 649 -LDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPN 702



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 12/151 (7%)

Query: 81  MRTEGLTNNAVKMFD-ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGK 139
           +R +G T   ++ F  +L K G   EAL L   ++ +  +PD V +T +I     A   +
Sbjct: 225 LRMDGFT---LRCFAYSLCKVGKWREALTL---VETENFVPDTVFYTKLISGLCEASLFE 278

Query: 140 EALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGT 199
           EA+    RM A+   PN  TY+ L+ G       N K LG  ++ L  M+ +G  P+   
Sbjct: 279 EAMDFLNRMRATSCLPNVVTYSTLLCGCL-----NKKQLGRCKRVLNMMMMEGCYPSPKI 333

Query: 200 YTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           + ++  A+  +     A  LL++M   G +P
Sbjct: 334 FNSLVHAYCTSGDHSYAYKLLKKMVKCGHMP 364



 Score = 50.4 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 1/125 (0%)

Query: 116 KGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADG-N 174
           +G  P      +++ AY ++G    A ++  +M+  G  P    Y +LI  +    D  N
Sbjct: 325 EGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLN 384

Query: 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
             +L  A+K   EM+  G+  N    ++       A K ++A  ++++M  +GF+PD   
Sbjct: 385 FDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTST 444

Query: 235 VKEAL 239
             + L
Sbjct: 445 YSKVL 449



 Score = 39.3 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 20/168 (11%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA----V 128
           E+  +M ++G+  N V    + D   K+G    A  L  ++K + H P    HTA    V
Sbjct: 759 ELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMK-QTHWP---THTAGYRKV 814

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA--DGNAKILGDAQKYLM 186
           IE +    +  E+L +   +     AP    Y +LI  L  A   +   ++L +   +  
Sbjct: 815 IEGFNK--EFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSA 872

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
            +V       + TY ++ E+   A KV+ A  L  +M  KG +P+ ++
Sbjct: 873 TLVDY-----SSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQS 915


>gi|297828900|ref|XP_002882332.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328172|gb|EFH58591.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 790

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 54/161 (33%), Positives = 80/161 (49%), Gaps = 8/161 (4%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +F  +  EG++ N +    + D   K G   EA  LF ++  K   P+     A+I  
Sbjct: 382 RRLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNALIHG 441

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
             SAG  KEAL +F +M+  G+ P  YT+ +LI  +    D       DA K L +M+  
Sbjct: 442 LCSAGNLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQGD-----FDDAHKCLQKMMSS 496

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           G +P A TY A  E +  A KV EA  ++ QMK +G  PD+
Sbjct: 497 GEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEGVPPDD 537



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 44/136 (32%), Positives = 68/136 (50%), Gaps = 12/136 (8%)

Query: 98  SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA 157
           SKD     A ++F ++ ++      V++  +I     AG+  EA+ +F+RM      PN 
Sbjct: 240 SKD--VDSAFRVFEEMPNRNE----VSYNQLIHGLCEAGRIDEAVSLFVRMKDDCCYPNV 293

Query: 158 YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
           YTY  LIKGL        K +  A   L EM+ + + P+  TY ++     RA  +D A 
Sbjct: 294 YTYTALIKGLC------RKNVHKAMGLLDEMLERNLVPDLITYNSLIAGQCRAGHLDSAY 347

Query: 218 GLLQQMKAKGFVPDEK 233
            LL  MK +G VPD++
Sbjct: 348 RLLSLMKERGLVPDQR 363



 Score = 56.6 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 9/134 (6%)

Query: 99  KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAY 158
           + G    A +L + +K++G +PD   +   I+    + + +EA R+F  +   GV+ N  
Sbjct: 339 RAGHLDSAYRLLSLMKERGLVPDQRTYGCFIDFLCKSNRVEEARRLFDSLTEEGVSANVI 398

Query: 159 TYAVLIKGLAAAADGNAKI--LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
            Y+VLI       DG  K+  + +A     +M+ K   PNA T+ A+      A  + EA
Sbjct: 399 MYSVLI-------DGYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCSAGNLKEA 451

Query: 217 RGLLQQMKAKGFVP 230
             L  QM   G  P
Sbjct: 452 LSLFDQMVKMGLKP 465



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 83/189 (43%), Gaps = 24/189 (12%)

Query: 62  KVVDEEPT-DPRNLQEIFHKMRTEGLTNNAVKMFDALSKD--------------GL---- 102
           +V +E P  +  +  ++ H +   G  + AV +F  +  D              GL    
Sbjct: 248 RVFEEMPNRNEVSYNQLIHGLCEAGRIDEAVSLFVRMKDDCCYPNVYTYTALIKGLCRKN 307

Query: 103 THEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAV 162
            H+A+ L  ++ ++  +PD++ + ++I     AG    A R+   M   G+ P+  TY  
Sbjct: 308 VHKAMGLLDEMLERNLVPDLITYNSLIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTYGC 367

Query: 163 LIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
            I  L       +  + +A++    +  +G+  N   Y+ + + + +  KVDEA  L ++
Sbjct: 368 FIDFLC-----KSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEK 422

Query: 223 MKAKGFVPD 231
           M +K   P+
Sbjct: 423 MLSKNCSPN 431



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 60/262 (22%), Positives = 104/262 (39%), Gaps = 45/262 (17%)

Query: 13  SPSPKRSLRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKKVVDEEPT--- 69
           +PS   SL   N   +  LQ S   S     K  V++ + L    D   K+V + P    
Sbjct: 67  TPSHVSSLFSLNLDPHTALQFSYWISQTPNFKHNVDSYASLLTLID-HHKIVSDVPKIIV 125

Query: 70  ----------DPRNLQEIFHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIKD 115
                     D   + +I  KM  + +T  ++K ++ L    ++ GL  E  QL+ ++ +
Sbjct: 126 SMIKCCYSAPDALFVSDICRKMSKDDITKLSLKCYNELLTLLARFGLVDEMNQLYTEMLE 185

Query: 116 KGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNA 175
           +    D+     +I  Y   G  KEA +   +M+ +G++P+ +T    I G   + D ++
Sbjct: 186 EFVSMDIYTFNLMINVYCKMGFVKEAKQFMCKMIQAGLSPDYFTSTSFILGYCRSKDVDS 245

Query: 176 KI--------------------------LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
                                       + +A    + M      PN  TYTA+ +   R
Sbjct: 246 AFRVFEEMPNRNEVSYNQLIHGLCEAGRIDEAVSLFVRMKDDCCYPNVYTYTALIKGLCR 305

Query: 210 AQKVDEARGLLQQMKAKGFVPD 231
            + V +A GLL +M  +  VPD
Sbjct: 306 -KNVHKAMGLLDEMLERNLVPD 326



 Score = 47.4 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 41/164 (25%), Positives = 65/164 (39%), Gaps = 30/164 (18%)

Query: 77  IFHKMRTEGLTNNAVKMFDALSKDGL----------------------THEALQLFAQIK 114
           + H + + G    A+ +FD + K GL                       H+ LQ   ++ 
Sbjct: 438 LIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQGDFDDAHKCLQ---KMM 494

Query: 115 DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174
             G  P    + A IE Y SAG+ +EA  + ++M   GV P+ +TY  LIK     A G 
Sbjct: 495 SSGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYTSLIK-----AYGK 549

Query: 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218
             +   A   L  M      P+  T+ ++ +     + V E  G
Sbjct: 550 LGLTYSAFDVLKSMFDADCEPSHHTFLSLIKQLFDKRYVVEKSG 593


>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
          Length = 1024

 Score = 91.3 bits (225), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 91/181 (50%), Gaps = 11/181 (6%)

Query: 56  PYDPFKKVVDEEPTDPRNLQE---IFHKMRTEGL---TNNAVKMFDALSKDGLTHEALQL 109
           P +P   V+        NL E   IF ++   G+             L K+G   EAL++
Sbjct: 576 PNNPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKV 635

Query: 110 FAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169
           F+++K+KG +PDV  ++++I  +   G+ ++A  +   M   G+APN + Y  L+ GL  
Sbjct: 636 FSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCK 695

Query: 170 AADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFV 229
           + D     +  A+K    M  KG+ P++ TY+ + + + +++ V EA  L  +M +KG  
Sbjct: 696 SGD-----IQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQ 750

Query: 230 P 230
           P
Sbjct: 751 P 751



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 85/161 (52%), Gaps = 12/161 (7%)

Query: 76  EIFHKMRTEGLTNNAVKMFDALSKDGLTHE-----ALQLFAQIKDKGHMPDVVAHTAVIE 130
           E+  +M    L  +AV  + A+  +GL H      A +L  ++   G  P+VV ++ +I 
Sbjct: 424 ELLDEMEKRNLVPSAVS-YGAMI-NGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIM 481

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
           AYAS G+ +EA R+   M  SGVAP+ + Y  +I  L+ A       + +A  YL+E+ G
Sbjct: 482 AYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGK-----MEEASTYLLEIQG 536

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +G++P+A T+ A    + +  K+ EA     +M   G +P+
Sbjct: 537 RGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPN 577



 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 9/159 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+  +M  +G+  N      + D L K G    A +LF  + +KG  PD V ++ +I+ Y
Sbjct: 669 ELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGY 728

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             +    EA  +F  M + GV P+++ Y  L+ G     D     +  A     EM+ KG
Sbjct: 729 CKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGD-----MEKAMNLFREMLQKG 783

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
                 ++  + + + ++ K+ EA  L Q+M AK  +PD
Sbjct: 784 FATTL-SFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPD 821



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 75/144 (52%), Gaps = 6/144 (4%)

Query: 98  SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA 157
           SK G   EA + F ++ D G MP+   +T +I  +  AG   EAL +F R+ A GV P+ 
Sbjct: 554 SKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPDV 613

Query: 158 YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
            T +  I GL      N ++  +A K   E+  KG+ P+  TY+++   F +  +V++A 
Sbjct: 614 QTCSAFIHGLLK----NGRV-QEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAF 668

Query: 218 GLLQQMKAKGFVPDEKAVKEALID 241
            L  +M  KG  P+   +  AL+D
Sbjct: 669 ELHDEMCLKGIAPN-IFIYNALVD 691



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/151 (29%), Positives = 76/151 (50%), Gaps = 10/151 (6%)

Query: 95  DALSKDGLTHEALQLFAQIK----DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           ++L KD L    ++LF ++     D     DV  +T ++ A    G  + A RV + M  
Sbjct: 197 NSLLKDLLKCGMMELFWKVYNGMLDAKMGFDVYTYTYLVGALCKTGDLRGAKRVLIEMDE 256

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
            G+ PN + Y+++I+G+    D     + +A +    M  KG+ PN  TYT +     RA
Sbjct: 257 KGLNPNEFIYSLVIEGMCQVGD-----IDEAVELKRSMGEKGLVPNTYTYTIITAGLCRA 311

Query: 211 QKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           ++++EA+   ++M+  G  PD  A   ALID
Sbjct: 312 KRMNEAKLTFEEMQKTGLKPDYNACS-ALID 341



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 64/139 (46%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   LSK G   EA     +I+ +G  PD V   A I  Y+  G+  EA + F  ML  G
Sbjct: 514 IISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHG 573

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN   Y VLI G   A +     L +A      +   G+ P+  T +A     ++  +
Sbjct: 574 LMPNNPLYTVLINGHFKAGN-----LMEALSIFRRLHALGVLPDVQTCSAFIHGLLKNGR 628

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V EA  +  ++K KG VPD
Sbjct: 629 VQEALKVFSELKEKGLVPD 647



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 62/127 (48%), Gaps = 5/127 (3%)

Query: 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
           +EA   F +++  G  PD  A +A+I+ +   G   E LR+   M++ G+  N  TY VL
Sbjct: 315 NEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVL 374

Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           I GL          +  A + L  MV  G +PN+ T+  + E + R   +  A  LL +M
Sbjct: 375 IHGLCKFGK-----MEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEM 429

Query: 224 KAKGFVP 230
           + +  VP
Sbjct: 430 EKRNLVP 436



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 66/143 (46%), Gaps = 5/143 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   K G   EA  LF +++++  + D V +T+++  Y   GQ  E   +F +M+A G
Sbjct: 828 VIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKG 887

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V P+  TY     GL   A      L +A K   E+VGKGM      +  +  A  + + 
Sbjct: 888 VKPDEVTY-----GLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKRED 942

Query: 213 VDEARGLLQQMKAKGFVPDEKAV 235
           + EA  LL +M   G  P   A 
Sbjct: 943 LTEASKLLDEMGELGLKPSLAAC 965



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D+  + G+  EA  +F   K+   +  ++   ++++     G  +   +V+  ML + 
Sbjct: 164 LIDSYKRMGMLDEAANVFFVAKNDSILISLIRCNSLLKDLLKCGMMELFWKVYNGMLDAK 223

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +  + YTY  L+  L    D     L  A++ L+EM  KG+ PN   Y+ V E   +   
Sbjct: 224 MGFDVYTYTYLVGALCKTGD-----LRGAKRVLIEMDEKGLNPNEFIYSLVIEGMCQVGD 278

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +DEA  L + M  KG VP+
Sbjct: 279 IDEAVELKRSMGEKGLVPN 297



 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 77/159 (48%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           EI   M T G   N+     + +   ++     AL+L  +++ +  +P  V++ A+I   
Sbjct: 389 EILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGL 448

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
                   A ++  +M  SG+ PN   Y++LI  +A A++G  +   +A++ L  M   G
Sbjct: 449 CHCKDLSLANKLLEKMTFSGLKPNVVVYSILI--MAYASEGRIE---EARRLLDGMSCSG 503

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + P+   Y A+     +A K++EA   L +++ +G  PD
Sbjct: 504 VAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPD 542



 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 5/132 (3%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
           AL K G    A ++  ++ +KG  P+   ++ VIE     G   EA+ +   M   G+ P
Sbjct: 237 ALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGMCQVGDIDEAVELKRSMGEKGLVP 296

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           N YTY ++  GL       AK + +A+    EM   G++P+    +A+ + F+R   +DE
Sbjct: 297 NTYTYTIITAGLC-----RAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDE 351

Query: 216 ARGLLQQMKAKG 227
              +   M + G
Sbjct: 352 VLRIKDVMVSCG 363



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 76/187 (40%), Gaps = 33/187 (17%)

Query: 78  FHKMRTEGLT---NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F +M+  GL    N    + D   ++G   E L++   +   G   +++ +  +I     
Sbjct: 321 FEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCK 380

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA-------------------------- 168
            G+ ++A  +   M+  G  PN+ T+ +LI+G                            
Sbjct: 381 FGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVS 440

Query: 169 --AAADG--NAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
             A  +G  + K L  A K L +M   G++PN   Y+ +  A+    +++EAR LL  M 
Sbjct: 441 YGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGMS 500

Query: 225 AKGFVPD 231
             G  PD
Sbjct: 501 CSGVAPD 507



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 74/162 (45%), Gaps = 7/162 (4%)

Query: 70  DPRNLQEIFHKMRTEGL--TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           D      +F +M  +G   T +   + D   K     EA QLF ++  K  MPD V +T 
Sbjct: 768 DMEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTT 827

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           VI+ +  AG+ +EA  +F  M    +  +  TY  L+ G       ++++    +K    
Sbjct: 828 VIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQ-SSEVFALFEK---- 882

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFV 229
           MV KG++P+  TY  V  A  +   + EA  L  ++  KG +
Sbjct: 883 MVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGML 924


>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
 gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score = 90.9 bits (224), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 87/188 (46%), Gaps = 33/188 (17%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F KM       N V    + D+L KD L +EA++  +++ D+G  PDVV +  ++  + 
Sbjct: 223 VFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFC 282

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA------------------------- 168
           S GQ  EA R+F  M+   V P+  T+ +L+ GL                          
Sbjct: 283 SLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAY 342

Query: 169 ---AAADGNA--KILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
              A  DG      + +A K L  M+GKG  PN  +Y  +   + ++++++EA+ LL +M
Sbjct: 343 TYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEM 402

Query: 224 KAKGFVPD 231
             K   PD
Sbjct: 403 SEKNLTPD 410



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 82/183 (44%), Gaps = 24/183 (13%)

Query: 68  PTDPRNLQEIFHKMRTEGLTNNAVKMF-------------------DALSKDGLTHEALQ 108
           P D      I H   + G  N A ++F                   D L K+G+  EA  
Sbjct: 268 PPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARC 327

Query: 109 LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
           +   + +KG  P+   + A+++ Y    Q  EA++V   M+  G APN  +Y +LI G  
Sbjct: 328 VSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYC 387

Query: 169 AAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
                 +K + +A++ L EM  K + P+  TY+ + +   +  +  EA  L ++M + G 
Sbjct: 388 K-----SKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGL 442

Query: 229 VPD 231
           +PD
Sbjct: 443 LPD 445



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 71/139 (51%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L  +G   EA+ LF ++   GH P+V+++  VI      G    A+RVF +M  + 
Sbjct: 172 LINGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNR 231

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN  TY  +I  L        +++ +A ++L EMV +G+ P+  TY  +   F    +
Sbjct: 232 GKPNVVTYNTIIDSLCK-----DRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQ 286

Query: 213 VDEARGLLQQMKAKGFVPD 231
           ++EA  L ++M  +  +PD
Sbjct: 287 LNEATRLFKEMVGRNVMPD 305



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 80/160 (50%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +  +M  + LT + V    +   L + G   EAL LF ++   G +PD++A++ +++ 
Sbjct: 396 KRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDG 455

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +   G   EAL++   M    + PN   Y +LI+G+  A       L  A++   ++   
Sbjct: 456 FCKHGHLDEALKLLKEMHERRIKPNIILYTILIRGMFIAGK-----LEVAKELFSKLSAD 510

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G+RP+  TY  + +  ++    DEA    ++M+  GF+PD
Sbjct: 511 GIRPDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDDGFLPD 550



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 84/172 (48%), Gaps = 8/172 (4%)

Query: 71  PRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           PR    +F +M + GL  + +    + D   K G   EAL+L  ++ ++   P+++ +T 
Sbjct: 427 PREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTI 486

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           +I     AG+ + A  +F ++ A G+ P+ +TY V+IKGL         +  +A ++  +
Sbjct: 487 LIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEG-----LSDEAYEFFRK 541

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
           M   G  P++ +Y  + + F++ Q    A  L+ +M  K F  D    +  L
Sbjct: 542 MEDDGFLPDSCSYNVIIQGFLQNQDSSTAIQLIDEMVGKRFSADSSTFQMLL 593



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 80/164 (48%), Gaps = 13/164 (7%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +   K    +EA +L +++ +K   PD V ++ +++     G+ +EAL +F  M +SG
Sbjct: 382 LINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSG 441

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+   Y++L+ G           L +A K L EM  + ++PN   YT +      A K
Sbjct: 442 LLPDLMAYSILLDGFCKHGH-----LDEALKLLKEMHERRIKPNIILYTILIRGMFIAGK 496

Query: 213 VDEARGLLQQMKAKGFVPD--------EKAVKEALIDKRGQGFR 248
           ++ A+ L  ++ A G  PD        +  +KE L D+  + FR
Sbjct: 497 LEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAYEFFR 540



 Score = 43.9 bits (102), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 56/136 (41%), Gaps = 9/136 (6%)

Query: 98  SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA 157
           S D    +AL  F ++      P VV     + + A   Q   A+ +  +M   GV  N 
Sbjct: 72  SNDISIDDALTSFYRMVRMNPRPSVVEFGKFLGSIAKKKQYSSAVSLCNQMDLFGVTHNV 131

Query: 158 YTYAVLIKGLA--AAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           Y+  VLI  L   +  D    ++G       +M   G++P+A T+  +        K+ E
Sbjct: 132 YSLNVLINCLCRLSHVDFAVSVMG-------KMFKLGIQPDAITFNTLINGLCNEGKIKE 184

Query: 216 ARGLLQQMKAKGFVPD 231
           A GL  +M   G  P+
Sbjct: 185 AVGLFNEMVWSGHEPN 200


>gi|115459104|ref|NP_001053152.1| Os04g0488500 [Oryza sativa Japonica Group]
 gi|113564723|dbj|BAF15066.1| Os04g0488500 [Oryza sativa Japonica Group]
          Length = 801

 Score = 90.9 bits (224), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 60/179 (33%), Positives = 90/179 (50%), Gaps = 15/179 (8%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M+  G+T +      + D+  K GL  +A  LF +++  G  P VV +TA+I AY 
Sbjct: 310 LFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYL 369

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN------AKILG-----DAQ 182
            A Q  +A  +F RM+ +G  PN  TY  L+ GL  A + +      AK++G     D+ 
Sbjct: 370 KAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSD 429

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
            Y        + PN  TY A+ +   +A KVD A  LL  M + G  P+   V +ALID
Sbjct: 430 FYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNH-IVYDALID 487



 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 73/160 (45%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            E+   M + G   N +    + D   K G    A ++F Q+   G++P V  +T++I+ 
Sbjct: 464 HELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDR 523

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G+   A++V  +ML     PN  TY  +I GL    +        A K L  M  K
Sbjct: 524 MFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESE-----KALKLLSLMEEK 578

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G  PN  TYTA+ +   +A K+D +  L  QM  KG  P+
Sbjct: 579 GCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPN 618



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 88/204 (43%), Gaps = 17/204 (8%)

Query: 49  TKSKLPPPYDPFK----KVVDEEPTDPRNLQEIFHKMRTEGLTNNAV-------KMFDAL 97
           T    PP Y  +      +  +E     +L ++  K+  E L  N V            L
Sbjct: 204 TTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCL 263

Query: 98  SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA 157
              G   +A QL  ++  KG +PD   ++ VI     A + ++A  +F  M   GV P+ 
Sbjct: 264 CGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDV 323

Query: 158 YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
           YTY +LI     A      ++  AQ    EM   G  P   TYTA+  A+++A++V +A 
Sbjct: 324 YTYTILIDSFCKAG-----LIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQAN 378

Query: 218 GLLQQMKAKGFVPDEKAVKEALID 241
            +  +M   G  P++     AL+D
Sbjct: 379 DIFHRMVDAGCRPND-VTYGALVD 401



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 93/189 (49%), Gaps = 16/189 (8%)

Query: 49  TKSKLPPPYDPFKKVVDEEPTDPR-NL-QEIFHKMRTEGLTNNAVK---MFDALSKDGLT 103
           TK    P    +  ++D    D R +L  ++  +M  +  T N V    M D L + G +
Sbjct: 506 TKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGES 565

Query: 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
            +AL+L + +++KG  P+VV +TA+I+    AG+   +L +F +M   G +PN  TY VL
Sbjct: 566 EKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVL 625

Query: 164 IKGLAAAA--DGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221
           I  L AA   D    +LG+ ++       +G R     ++  F A         + G+L+
Sbjct: 626 INHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIA---------SLGILE 676

Query: 222 QMKAKGFVP 230
           +M++ G VP
Sbjct: 677 EMESYGTVP 685



 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 72/153 (47%), Gaps = 6/153 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K      A +L   +   G  P+ + + A+I+ +  AG+   A  VF++M   G
Sbjct: 450 LVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCG 509

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+ +TY  LI  +    DG   +   A K L +M+     PN  TYTA+ +   R  +
Sbjct: 510 YLPSVHTYTSLIDRM--FKDGRLDL---AMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGE 564

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
            ++A  LL  M+ KG  P+      ALID  G+
Sbjct: 565 SEKALKLLSLMEEKGCSPN-VVTYTALIDGLGK 596



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 82/186 (44%), Gaps = 25/186 (13%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQI---------------KDK 116
            +IFH+M   G   N V    + D L K G   +A +++A++               +D+
Sbjct: 378 NDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDR 437

Query: 117 GHM-PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNA 175
             + P+VV + A+++    A +   A  +   ML+SG  PN   Y  LI G   A     
Sbjct: 438 HTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGK--- 494

Query: 176 KILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAV 235
             +  AQ+  ++M   G  P+  TYT++ +   +  ++D A  +L QM      P+    
Sbjct: 495 --IDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPN-VVT 551

Query: 236 KEALID 241
             A+ID
Sbjct: 552 YTAMID 557



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 79/196 (40%), Gaps = 40/196 (20%)

Query: 81  MRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG- 136
           M  +G + N V    + D L K G    +L LF Q+  KG  P+ V +  +I    +AG 
Sbjct: 575 MEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGL 634

Query: 137 --------------------QGKEA------------LRVFMRMLASGVAPNAYTYAVLI 164
                               QG               L +   M + G  P A  Y +LI
Sbjct: 635 LDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLI 694

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
              + A  G  +I  +  K +ME V   ++ +   Y ++ +A   A +V+EA  L  +M 
Sbjct: 695 DCFSKA--GRLEIAMELHKEMME-VPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMT 751

Query: 225 AKGFVPDEKAVKEALI 240
            +GFVP E +V   LI
Sbjct: 752 RRGFVP-ELSVFVCLI 766



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 56/135 (41%), Gaps = 8/135 (5%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
           AL K+G   +AL +   I+ +    D V  T +I     A    EA+    RM  +   P
Sbjct: 84  ALCKEGRWADALDM---IEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIP 140

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           N  TY  L+ G         K LG  ++ +  M+ +G  PN   + ++  ++   +    
Sbjct: 141 NVVTYRTLLSGFL-----KKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAY 195

Query: 216 ARGLLQQMKAKGFVP 230
           A  LL +M   G  P
Sbjct: 196 AYKLLNRMTTCGCPP 210


>gi|38344241|emb|CAE02059.2| OJ991113_30.18 [Oryza sativa Japonica Group]
          Length = 736

 Score = 90.9 bits (224), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 60/179 (33%), Positives = 90/179 (50%), Gaps = 15/179 (8%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M+  G+T +      + D+  K GL  +A  LF +++  G  P VV +TA+I AY 
Sbjct: 245 LFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYL 304

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN------AKILG-----DAQ 182
            A Q  +A  +F RM+ +G  PN  TY  L+ GL  A + +      AK++G     D+ 
Sbjct: 305 KAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSD 364

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
            Y        + PN  TY A+ +   +A KVD A  LL  M + G  P+   V +ALID
Sbjct: 365 FYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNH-IVYDALID 422



 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 73/160 (45%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            E+   M + G   N +    + D   K G    A ++F Q+   G++P V  +T++I+ 
Sbjct: 399 HELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDR 458

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G+   A++V  +ML     PN  TY  +I GL    +        A K L  M  K
Sbjct: 459 MFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESE-----KALKLLSLMEEK 513

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G  PN  TYTA+ +   +A K+D +  L  QM  KG  P+
Sbjct: 514 GCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPN 553



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 88/204 (43%), Gaps = 17/204 (8%)

Query: 49  TKSKLPPPYDPFK----KVVDEEPTDPRNLQEIFHKMRTEGLTNNAV-------KMFDAL 97
           T    PP Y  +      +  +E     +L ++  K+  E L  N V            L
Sbjct: 139 TTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCL 198

Query: 98  SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA 157
              G   +A QL  ++  KG +PD   ++ VI     A + ++A  +F  M   GV P+ 
Sbjct: 199 CGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDV 258

Query: 158 YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
           YTY +LI     A      ++  AQ    EM   G  P   TYTA+  A+++A++V +A 
Sbjct: 259 YTYTILIDSFCKAG-----LIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQAN 313

Query: 218 GLLQQMKAKGFVPDEKAVKEALID 241
            +  +M   G  P++     AL+D
Sbjct: 314 DIFHRMVDAGCRPND-VTYGALVD 336



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 93/189 (49%), Gaps = 16/189 (8%)

Query: 49  TKSKLPPPYDPFKKVVDEEPTDPR-NL-QEIFHKMRTEGLTNNAVK---MFDALSKDGLT 103
           TK    P    +  ++D    D R +L  ++  +M  +  T N V    M D L + G +
Sbjct: 441 TKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGES 500

Query: 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
            +AL+L + +++KG  P+VV +TA+I+    AG+   +L +F +M   G +PN  TY VL
Sbjct: 501 EKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVL 560

Query: 164 IKGLAAAA--DGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221
           I  L AA   D    +LG+ ++       +G R     ++  F A         + G+L+
Sbjct: 561 INHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIA---------SLGILE 611

Query: 222 QMKAKGFVP 230
           +M++ G VP
Sbjct: 612 EMESYGTVP 620



 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 72/153 (47%), Gaps = 6/153 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K      A +L   +   G  P+ + + A+I+ +  AG+   A  VF++M   G
Sbjct: 385 LVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCG 444

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+ +TY  LI  +    DG   +   A K L +M+     PN  TYTA+ +   R  +
Sbjct: 445 YLPSVHTYTSLIDRM--FKDGRLDL---AMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGE 499

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
            ++A  LL  M+ KG  P+      ALID  G+
Sbjct: 500 SEKALKLLSLMEEKGCSPN-VVTYTALIDGLGK 531



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 82/186 (44%), Gaps = 25/186 (13%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQI---------------KDK 116
            +IFH+M   G   N V    + D L K G   +A +++A++               +D+
Sbjct: 313 NDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDR 372

Query: 117 GHM-PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNA 175
             + P+VV + A+++    A +   A  +   ML+SG  PN   Y  LI G   A     
Sbjct: 373 HTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGK--- 429

Query: 176 KILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAV 235
             +  AQ+  ++M   G  P+  TYT++ +   +  ++D A  +L QM      P+    
Sbjct: 430 --IDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPN-VVT 486

Query: 236 KEALID 241
             A+ID
Sbjct: 487 YTAMID 492



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 79/196 (40%), Gaps = 40/196 (20%)

Query: 81  MRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG- 136
           M  +G + N V    + D L K G    +L LF Q+  KG  P+ V +  +I    +AG 
Sbjct: 510 MEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGL 569

Query: 137 --------------------QGKEA------------LRVFMRMLASGVAPNAYTYAVLI 164
                               QG               L +   M + G  P A  Y +LI
Sbjct: 570 LDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLI 629

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
              + A  G  +I  +  K +ME V   ++ +   Y ++ +A   A +V+EA  L  +M 
Sbjct: 630 DCFSKA--GRLEIAMELHKEMME-VPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMT 686

Query: 225 AKGFVPDEKAVKEALI 240
            +GFVP E +V   LI
Sbjct: 687 RRGFVP-ELSVFVCLI 701



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 56/135 (41%), Gaps = 8/135 (5%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
           AL K+G   +AL +   I+ +    D V  T +I     A    EA+    RM  +   P
Sbjct: 19  ALCKEGRWADALDM---IEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIP 75

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           N  TY  L+ G         K LG  ++ +  M+ +G  PN   + ++  ++   +    
Sbjct: 76  NVVTYRTLLSGFL-----KKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAY 130

Query: 216 ARGLLQQMKAKGFVP 230
           A  LL +M   G  P
Sbjct: 131 AYKLLNRMTTCGCPP 145


>gi|125548803|gb|EAY94625.1| hypothetical protein OsI_16402 [Oryza sativa Indica Group]
          Length = 769

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 60/179 (33%), Positives = 90/179 (50%), Gaps = 15/179 (8%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M+  G+T +      + D+  K GL  +A  LF +++  G  P VV +TA+I AY 
Sbjct: 479 LFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYL 538

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN------AKILG-----DAQ 182
            A Q  +A  +F RM+ +G  PN  TY  L+ GL  A + +      AK++G     D+ 
Sbjct: 539 KAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSD 598

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
            Y        + PN  TY A+ +   +A KVD A  LL  M + G  P+   V +ALID
Sbjct: 599 FYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNH-IVYDALID 656



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 88/204 (43%), Gaps = 17/204 (8%)

Query: 49  TKSKLPPPYDPFK----KVVDEEPTDPRNLQEIFHKMRTEGLTNNAV-------KMFDAL 97
           T    PP Y  +      +  +E     +L ++  K+  E L  N V            L
Sbjct: 373 TTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCL 432

Query: 98  SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA 157
              G   +A QL  ++  KG +PD   ++ VI     A + ++A  +F  M   GV P+ 
Sbjct: 433 CGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDV 492

Query: 158 YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
           YTY +LI     A      ++  AQ    EM   G  P   TYTA+  A+++A++V +A 
Sbjct: 493 YTYTILIDSFCKAG-----LIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQAN 547

Query: 218 GLLQQMKAKGFVPDEKAVKEALID 241
            +  +M   G  P++     AL+D
Sbjct: 548 DIFHRMVDAGCRPND-VTYGALVD 570



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 74/156 (47%), Gaps = 6/156 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K      A +L   +   G  P+ + + A+I+ +  AG+   A  VF++M   G
Sbjct: 619 LVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCG 678

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+ +TY  LI  +    DG   +   A K L +M+     PN  TYTA+ +   R  +
Sbjct: 679 YLPSVHTYTSLIDRM--FKDGRLDL---AMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGE 733

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFR 248
            ++A  LL  M+ KG  P+      ALID  GQ ++
Sbjct: 734 SEKALKLLSLMEEKGCSPN-VVTYTALIDGLGQSWQ 768



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 78/176 (44%), Gaps = 24/176 (13%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQI---------------KDK 116
            +IFH+M   G   N V    + D L K G   +A +++A++               +D+
Sbjct: 547 NDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDR 606

Query: 117 GHM-PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNA 175
             + P+VV + A+++    A +   A  +   ML+SG  PN   Y  LI G   A     
Sbjct: 607 HTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGK--- 663

Query: 176 KILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             +  AQ+  ++M   G  P+  TYT++ +   +  ++D A  +L QM      P+
Sbjct: 664 --IDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPN 717



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 60/136 (44%), Gaps = 8/136 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            E+   M + G   N +    + D   K G    A ++F Q+   G++P V  +T++I+ 
Sbjct: 633 HELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDR 692

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G+   A++V  +ML     PN  TY  +I GL    +        A K L  M  K
Sbjct: 693 MFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEK-----ALKLLSLMEEK 747

Query: 192 GMRPNAGTYTAVFEAF 207
           G  PN  TYTA+ +  
Sbjct: 748 GCSPNVVTYTALIDGL 763



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/162 (21%), Positives = 62/162 (38%), Gaps = 27/162 (16%)

Query: 97  LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
             + G+ +EAL+   ++KD G+ P  V + A+++  +SAGQ     RV   M  SG   +
Sbjct: 184 CCRGGMWNEALEELGRLKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMD 243

Query: 157 AYTYAVLIKGLAAA---ADG------------------------NAKILGDAQKYLMEMV 189
            +T       L      AD                          A    +A  +L  M 
Sbjct: 244 RFTVGCFAHALCKEGRWADALDMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMR 303

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
                PN  TY  +   F++ +++   + ++  M  +G  P+
Sbjct: 304 CNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPN 345



 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 56/135 (41%), Gaps = 8/135 (5%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
           AL K+G   +AL +   I+ +    D V  T +I     A    EA+    RM  +   P
Sbjct: 253 ALCKEGRWADALDM---IEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIP 309

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           N  TY  L+ G         K LG  ++ +  M+ +G  PN   + ++  ++   +    
Sbjct: 310 NVVTYRTLLSGFL-----KKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAY 364

Query: 216 ARGLLQQMKAKGFVP 230
           A  LL +M   G  P
Sbjct: 365 AYKLLNRMTTCGCPP 379


>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 935

 Score = 90.5 bits (223), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 90/181 (49%), Gaps = 11/181 (6%)

Query: 56  PYDPFKKVVDEEPTDPRNLQE---IFHKMRTEGL---TNNAVKMFDALSKDGLTHEALQL 109
           P +P   V+        NL E   IF  +   G+             L K+G   EAL++
Sbjct: 487 PNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKV 546

Query: 110 FAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169
           F+++K+KG +PDV  ++++I  +   G+ ++A  +   M   G+APN + Y  L+ GL  
Sbjct: 547 FSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCK 606

Query: 170 AADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFV 229
           + D     +  A+K    M  KG+ P++ TY+ + + + +++ V EA  L  +M +KG  
Sbjct: 607 SGD-----IQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQ 661

Query: 230 P 230
           P
Sbjct: 662 P 662



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 84/161 (52%), Gaps = 12/161 (7%)

Query: 76  EIFHKMRTEGLTNNAVKMFDALSKDGLTHE-----ALQLFAQIKDKGHMPDVVAHTAVIE 130
           E+  +M    L  +AV  + A+  +GL H      A +L  ++   G  P+VV ++ +I 
Sbjct: 335 ELLDEMEKRNLVPSAVS-YGAMI-NGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIM 392

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
            YAS G+ +EA R+   M  SGVAP+ + Y  +I  L+ A       + +A  YL+E+ G
Sbjct: 393 GYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGK-----MEEASTYLLEIQG 447

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +G++P+A T+ A    + +  K+ EA     +M   G +P+
Sbjct: 448 RGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPN 488



 Score = 73.9 bits (180), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 9/159 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+  +M  +G+  N      + D L K G    A +LF  + +KG  PD V ++ +I+ Y
Sbjct: 580 ELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGY 639

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             +    EA  +F  M + GV P+++ Y  L+ G     D     +  A     EM+ KG
Sbjct: 640 CKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGD-----MEKAMNLFREMLQKG 694

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
                 ++  + + + ++ K+ EA  L Q+M AK  +PD
Sbjct: 695 FATTL-SFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPD 732



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 73/160 (45%), Gaps = 14/160 (8%)

Query: 78  FHKMRTEGLT-NNAVK--MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F +M   GL  NN +   + +   K G   EAL +F  +   G +PDV   +A I     
Sbjct: 477 FDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLK 536

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM---EMVGK 191
            G+ +EAL+VF  +   G+ P+ +TY+ LI G            G+ +K      EM  K
Sbjct: 537 NGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQ--------GEVEKAFELHDEMCLK 588

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G+ PN   Y A+ +   ++  +  AR L   M  KG  PD
Sbjct: 589 GIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPD 628



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 64/139 (46%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   LSK G   EA     +I+ +G  PD V   A I  Y+  G+  EA + F  ML  G
Sbjct: 425 IISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHG 484

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN   Y VLI G   A +     L +A      +   G+ P+  T +A     ++  +
Sbjct: 485 LMPNNPLYTVLINGHFKAGN-----LMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGR 539

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V EA  +  ++K KG VPD
Sbjct: 540 VQEALKVFSELKEKGLVPD 558



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 5/127 (3%)

Query: 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
           +EA   F +++  G  PD  A +A+I+ +   G   E LR+   M++ G+  N  TY VL
Sbjct: 226 NEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVL 285

Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           I GL          +  A + L  M+  G +PN+ T+  + E + R   +  A  LL +M
Sbjct: 286 IHGLCKFGK-----MEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEM 340

Query: 224 KAKGFVP 230
           + +  VP
Sbjct: 341 EKRNLVP 347



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 66/143 (46%), Gaps = 5/143 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   K G   EA  LF +++++  + D V +T+++  Y   GQ  E   +F +M+A G
Sbjct: 739 VIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKG 798

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V P+  TY     GL   A      L +A K   E+VGKGM      +  +  A  + + 
Sbjct: 799 VKPDEVTY-----GLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKRED 853

Query: 213 VDEARGLLQQMKAKGFVPDEKAV 235
           + EA  LL +M   G  P   A 
Sbjct: 854 LTEASKLLDEMGELGLKPSLAAC 876



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 73/159 (45%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           EI   M T G   N+     + +   ++     AL+L  +++ +  +P  V++ A+I   
Sbjct: 300 EILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGL 359

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
                   A ++  +M  SG+ PN   Y+ LI G A+        + +A++ L  M   G
Sbjct: 360 CHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGR-----IEEARRLLDGMSCSG 414

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + P+   Y A+     +A K++EA   L +++ +G  PD
Sbjct: 415 VAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPD 453



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 74/162 (45%), Gaps = 7/162 (4%)

Query: 70  DPRNLQEIFHKMRTEGL--TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           D      +F +M  +G   T +   + D   K     EA QLF ++  K  MPD V +T 
Sbjct: 679 DMEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTT 738

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           VI+ +  AG+ +EA  +F  M    +  +  TY  L+ G       ++++    +K    
Sbjct: 739 VIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQ-SSEVFALFEK---- 793

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFV 229
           MV KG++P+  TY  V  A  +   + EA  L  ++  KG +
Sbjct: 794 MVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGML 835



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 75/187 (40%), Gaps = 33/187 (17%)

Query: 78  FHKMRTEGLT---NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F +M+  GL    N    + D   ++G   E L++   +   G   +++ +  +I     
Sbjct: 232 FEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCK 291

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA-------------------------- 168
            G+ ++A  +   M+  G  PN+ T+ +LI+G                            
Sbjct: 292 FGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVS 351

Query: 169 --AAADG--NAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
             A  +G  + K L  A K L +M   G++PN   Y+ +   +    +++EAR LL  M 
Sbjct: 352 YGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMS 411

Query: 225 AKGFVPD 231
             G  PD
Sbjct: 412 CSGVAPD 418



 Score = 44.3 bits (103), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 23/123 (18%)

Query: 123 VAHTAVIEAYASAGQGKEALRVFM------------------RMLASGVAPNAYTYAVLI 164
           V    +I++Y   G   EA  VF                    M   G+ PN YTY ++ 
Sbjct: 157 VVFDILIDSYKRMGMLDEAANVFFVAKNDSILISLIRCNSLRSMGEKGLVPNTYTYTIIT 216

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            GL       AK + +A+    EM   G++P+    +A+ + F+R   +DE   +   M 
Sbjct: 217 AGLC-----RAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMV 271

Query: 225 AKG 227
           + G
Sbjct: 272 SCG 274


>gi|168055632|ref|XP_001779828.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668740|gb|EDQ55341.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 730

 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 88/179 (49%), Gaps = 15/179 (8%)

Query: 73  NLQEIFHKMRTEGLT------NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           N+ E+F +M+ +G+       N A+    A +   L  EA +LF Q+K     PD V + 
Sbjct: 171 NILELFEEMKAQGIQPDEYTYNTAIT---ACASGSLCEEATELFTQMKSSNCTPDRVTYN 227

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
           A+++ Y  AG   EA  V   M ++G  PN  TY  L+     +A G A +   A +   
Sbjct: 228 ALLDVYGKAGWYNEAANVLKEMESAGCLPNIVTYNELL-----SAFGRAGLCNAAAEMKD 282

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
            MV KG+ P+  TYT++  A+ RA KV++A  +  QM+     P+      ALI   G+
Sbjct: 283 SMVSKGIEPDVFTYTSLLSAYSRAGKVEQAMEIYNQMRTSNCTPNSFTFN-ALIGMHGK 340



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 81/176 (46%), Gaps = 13/176 (7%)

Query: 76  EIFHKMRT------EGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           E+F+ MR       +G+T     M   L ++       +LF  ++++G+  DV A+T++I
Sbjct: 67  EVFNWMRQSVNFRPDGVT--IAVMLRILGRESQLTTVSRLFKSLREEGYPLDVYAYTSLI 124

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
            A +   + KEAL  F +M  +G  P+  TY V+I            IL    +   EM 
Sbjct: 125 SALSRNRKFKEALGFFEQMKEAGPQPSLVTYNVIIDLYGKKGRSWENIL----ELFEEMK 180

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
            +G++P+  TY     A       +EA  L  QMK+    PD +    AL+D  G+
Sbjct: 181 AQGIQPDEYTYNTAITACASGSLCEEATELFTQMKSSNCTPD-RVTYNALLDVYGK 235



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 73/153 (47%), Gaps = 8/153 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           + F  +R+ GL  + V    +     ++G+  +      +    G  PD+V++  VI +Y
Sbjct: 559 DTFALLRSTGLEPDVVTYNCLMGMYGREGMYRKCEATLRECMAAGQTPDLVSYNTVIFSY 618

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           +  GQ   A R+F  M+++G+ P+++TY   +         N  +  +A   +  M   G
Sbjct: 619 SKHGQLSSATRIFHEMVSNGIQPDSFTYNTFVGCYV-----NGGMFPEALSVVKHMHKTG 673

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
            +P+  TY  + +A+ +  K +E   +L+ +K+
Sbjct: 674 CKPDEVTYRTLVDAYCKIGKFEEVERILKFIKS 706



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 73/170 (42%), Gaps = 9/170 (5%)

Query: 75  QEIFHKMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           ++ F  MR  G    T+    M     K G+  +A   FA ++  G  PDVV +  ++  
Sbjct: 523 EDAFLAMRHHGYLSDTSTFNAMISMYGKKGMMDKATDTFALLRSTGLEPDVVTYNCLMGM 582

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y   G  ++        +A+G  P+  +Y  +I   + +  G    L  A +   EMV  
Sbjct: 583 YGREGMYRKCEATLRECMAAGQTPDLVSYNTVI--FSYSKHGQ---LSSATRIFHEMVSN 637

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           G++P++ TY      +V      EA  +++ M   G  PDE   +  L+D
Sbjct: 638 GIQPDSFTYNTFVGCYVNGGMFPEALSVVKHMHKTGCKPDEVTYR-TLVD 686



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 78/170 (45%), Gaps = 14/170 (8%)

Query: 76  EIFHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           EI+++MRT   T N+   F+AL     K+    E + +F  ++  G  PD+V   +++ A
Sbjct: 314 EIYNQMRTSNCTPNSFT-FNALIGMHGKNKNFSEMMVIFEDMQACGVEPDIVTWNSLLGA 372

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK--GLAAAADGNAKILGDAQKYLMEMV 189
           +   G   E L+VF  M  +G  P+  T+ +LI+  G   ++D    I          M+
Sbjct: 373 FGKNGMYSEVLKVFRGMKKAGFEPDKATFNILIEAYGRCGSSDQALSIYDG-------ML 425

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
             G  P+  T+  +  A  R  + + A  +L ++    + P++ A    L
Sbjct: 426 QAGCTPDLATFNTLLAALAREGRWEHAELILDELNRSSYKPNDIAYASML 475



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 81/175 (46%), Gaps = 12/175 (6%)

Query: 72  RNLQE---IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAH 125
           +N  E   IF  M+  G+  + V    +  A  K+G+  E L++F  +K  G  PD    
Sbjct: 342 KNFSEMMVIFEDMQACGVEPDIVTWNSLLGAFGKNGMYSEVLKVFRGMKKAGFEPDKATF 401

Query: 126 TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185
             +IEAY   G   +AL ++  ML +G  P+  T+  L+  L  A +G  +    A+  L
Sbjct: 402 NILIEAYGRCGSSDQALSIYDGMLQAGCTPDLATFNTLLAAL--AREGRWE---HAELIL 456

Query: 186 MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
            E+     +PN   Y ++  A+    ++++ + ++  +    +VP  K + +  +
Sbjct: 457 DELNRSSYKPNDIAYASMLHAYANGGELEKLKEMVDTLHTI-YVPFTKILLKTFV 510


>gi|4038037|gb|AAC97219.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1107

 Score = 90.1 bits (222), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 85/159 (53%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E + +M+  GL  N V    + DA  K+G+  +A++ +  ++  G +P+   +T++I+A 
Sbjct: 221 EFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDAN 280

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G   +A R+   ML  GV  N  TY  LI GL      +A+ + +A++   +M   G
Sbjct: 281 CKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLC-----DAERMKEAEELFGKMDTAG 335

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + PN  +Y A+   FV+A+ +D A  LL ++K +G  PD
Sbjct: 336 VIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPD 374



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 78/148 (52%), Gaps = 11/148 (7%)

Query: 86  LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVF 145
           +T NA  + +   K G     L+ + ++K  G  P+VV+++ +++A+   G  ++A++ +
Sbjct: 201 ITYNA--LINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFY 258

Query: 146 MRMLASGVAPNAYTYAVLIKGLAAAADGNAKI--LGDAQKYLMEMVGKGMRPNAGTYTAV 203
           + M   G+ PN YTY  LI       D N KI  L DA +   EM+  G+  N  TYTA+
Sbjct: 259 VDMRRVGLVPNEYTYTSLI-------DANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTAL 311

Query: 204 FEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +    A+++ EA  L  +M   G +P+
Sbjct: 312 IDGLCDAERMKEAEELFGKMDTAGVIPN 339



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 69/149 (46%), Gaps = 6/149 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M D + K+G    A  LF ++K +G +PD V + ++I+ +   G+  + +  F  M    
Sbjct: 136 MIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMC 195

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  TY  LI             L    ++  EM G G++PN  +Y+ + +AF +   
Sbjct: 196 CEPDVITYNALINCFCKFGK-----LPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGM 250

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALID 241
           + +A      M+  G VP+E     +LID
Sbjct: 251 MQQAIKFYVDMRRVGLVPNEYTYT-SLID 278



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 9/145 (6%)

Query: 76  EIFHKMRTE-GLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + F+++  + GL  NA     M D L KD     A  LF Q+  KG +PD  A+T++++ 
Sbjct: 466 DYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDG 525

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G   EAL +  +M   G+  +   Y  L+ GL+     +   L  A+ +L EM+G+
Sbjct: 526 NFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLS-----HCNQLQKARSFLEEMIGE 580

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEA 216
           G+ P+     +V +       +DEA
Sbjct: 581 GIHPDEVLCISVLKKHYELGCIDEA 605



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 59/124 (47%), Gaps = 6/124 (4%)

Query: 112 QIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA 171
           ++K+ G   + + +T +++AY  +G   E L +   M    +     T+ VLI GL    
Sbjct: 400 EMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLC--- 456

Query: 172 DGNAKILGDAQKYLMEMVGK-GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
               K++  A  Y   +    G++ NA  +TA+ +   +  +V+ A  L +QM  KG VP
Sbjct: 457 --KNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVP 514

Query: 231 DEKA 234
           D  A
Sbjct: 515 DRTA 518



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 86/192 (44%), Gaps = 15/192 (7%)

Query: 41  QPTKKYVNTKS-KLPPPYDPFKKVVDEEPTDPRNLQEIF---HKMRTEGLTNNAVK---M 93
           Q  K YV+ +   L P    +  ++D       NL + F   ++M   G+  N V    +
Sbjct: 253 QAIKFYVDMRRVGLVPNEYTYTSLIDAN-CKIGNLSDAFRLGNEMLQVGVEWNVVTYTAL 311

Query: 94  FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGV 153
            D L       EA +LF ++   G +P++ ++ A+I  +  A     AL +   +   G+
Sbjct: 312 IDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGI 371

Query: 154 APNAYTYAVLIKGLAAAADGNAKILGDAQKYLM-EMVGKGMRPNAGTYTAVFEAFVRAQK 212
            P+   Y   I GL +      KI  +A K +M EM   G++ N+  YT + +A+ ++  
Sbjct: 372 KPDLLLYGTFIWGLCSLE----KI--EAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGN 425

Query: 213 VDEARGLLQQMK 224
             E   LL +MK
Sbjct: 426 PTEGLHLLDEMK 437



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 6/127 (4%)

Query: 119 MPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKIL 178
           +P      A+       G  +EA++ F +M    V P   +   L+   A     +    
Sbjct: 57  VPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTD---- 112

Query: 179 GDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEA 238
            D +++  +M+G G RP   TY  + +   +   V+ ARGL ++MK +G VPD      +
Sbjct: 113 -DVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPD-TVTYNS 170

Query: 239 LIDKRGQ 245
           +ID  G+
Sbjct: 171 MIDGFGK 177



 Score = 53.5 bits (127), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 12/169 (7%)

Query: 68  PTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQI-KDKGHMPDVVAHT 126
           PT+  +L +   ++  E        + D L K+ L  +A+  F +I  D G   +    T
Sbjct: 426 PTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFT 485

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
           A+I+      Q + A  +F +M+  G+ P+   Y  L+       DGN K  G+  + L 
Sbjct: 486 AMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLM-------DGNFK-QGNVLEALA 537

Query: 187 ---EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
              +M   GM+ +   YT++        ++ +AR  L++M  +G  PDE
Sbjct: 538 LRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDE 586


>gi|255584017|ref|XP_002532754.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527505|gb|EEF29631.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 721

 Score = 90.1 bits (222), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 73/139 (52%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +   K G    A   F ++ DKG  P VV +T++I  Y + G+  +A +V+  M A G
Sbjct: 268 LINGYCKLGNASAAKYYFDEMIDKGLTPTVVTYTSLISGYCNEGEWHKAFKVYNEMTAKG 327

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           ++PN YT+  +I GL       A ++ +A +   EM  + + P+  TY  + E   R+  
Sbjct: 328 ISPNTYTFTAIISGLC-----RANMMAEAIRLFGEMKERKIMPSEVTYNVMIEGHCRSGN 382

Query: 213 VDEARGLLQQMKAKGFVPD 231
           + EA  LL +M  KGFVPD
Sbjct: 383 ISEAFHLLDEMVGKGFVPD 401



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 72/167 (43%), Gaps = 13/167 (7%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D R L  +  +M   GL  +AV    M D  SK G   EA  L+  + D+G +P+VV +T
Sbjct: 487 DTRALFGLLKEMHNHGLRPDAVIYTNMIDRHSKAGNLKEAFGLWDIMVDEGCLPNVVTYT 546

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQK--Y 184
           A+I     AG   +A  +    L S V PN  TY   +  L           G+ +K   
Sbjct: 547 ALINGLCKAGLMDKAELLSKETLVSDVTPNHITYGCFLDHLTRG--------GNMEKAVQ 598

Query: 185 LMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           L   + KG      +Y  +   F R  K++EA  LL  M     +PD
Sbjct: 599 LHHAMLKGFLATTVSYNILIRGFCRLGKIEEATKLLHGMTDNDILPD 645



 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 66/159 (41%), Gaps = 8/159 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M  +GL  N +    + D+  + G    A+    ++        V  + ++I  Y 
Sbjct: 214 LFKEMGEKGLCANHITYSILIDSFCRRGEMDNAIGFLDKMTKASIEFTVYPYNSLINGYC 273

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G    A   F  M+  G+ P   TY  LI G     + +      A K   EM  KG+
Sbjct: 274 KLGNASAAKYYFDEMIDKGLTPTVVTYTSLISGYCNEGEWHK-----AFKVYNEMTAKGI 328

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
            PN  T+TA+     RA  + EA  L  +MK +  +P E
Sbjct: 329 SPNTYTFTAIISGLCRANMMAEAIRLFGEMKERKIMPSE 367



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/159 (22%), Positives = 77/159 (48%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +++++M  +G++ N      +   L +  +  EA++LF ++K++  MP  V +  +IE +
Sbjct: 318 KVYNEMTAKGISPNTYTFTAIISGLCRANMMAEAIRLFGEMKERKIMPSEVTYNVMIEGH 377

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             +G   EA  +   M+  G  P+ YTY  LI GL +        + +A++++ ++    
Sbjct: 378 CRSGNISEAFHLLDEMVGKGFVPDTYTYRPLISGLCSVGR-----VSEAKEFVDDLHKDH 432

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            + N   Y+A+   + +  +  +A    + M  +G   D
Sbjct: 433 HKLNNMCYSALVHGYCKEGRFKDAVSACRVMVERGVAMD 471



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 80/182 (43%), Gaps = 11/182 (6%)

Query: 56  PYDPFKKVVDEEPTDPRNLQEIFH---KMRTEGLTNNAVK---MFDALSKDGLTHEALQL 109
           P +    V+ E      N+ E FH   +M  +G   +      +   L   G   EA + 
Sbjct: 365 PSEVTYNVMIEGHCRSGNISEAFHLLDEMVGKGFVPDTYTYRPLISGLCSVGRVSEAKEF 424

Query: 110 FAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169
              +    H  + + ++A++  Y   G+ K+A+     M+  GVA +   YA+LI G A 
Sbjct: 425 VDDLHKDHHKLNNMCYSALVHGYCKEGRFKDAVSACRVMVERGVAMDLVCYAILIDGTAR 484

Query: 170 AADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFV 229
             D  A + G     L EM   G+RP+A  YT + +   +A  + EA GL   M  +G +
Sbjct: 485 EHDTRA-LFG----LLKEMHNHGLRPDAVIYTNMIDRHSKAGNLKEAFGLWDIMVDEGCL 539

Query: 230 PD 231
           P+
Sbjct: 540 PN 541



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 63/137 (45%), Gaps = 6/137 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +++  T     L  ++ + G  PD V +T +I+ ++ AG  KEA  ++  M+  G
Sbjct: 478 LIDGTAREHDTRALFGLLKEMHNHGLRPDAVIYTNMIDRHSKAGNLKEAFGLWDIMVDEG 537

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN  TY  LI GL  A      ++  A+    E +   + PN  TY    +   R   
Sbjct: 538 CLPNVVTYTALINGLCKAG-----LMDKAELLSKETLVSDVTPNHITYGCFLDHLTRGGN 592

Query: 213 VDEARGLLQQMKAKGFV 229
           +++A  L   M  KGF+
Sbjct: 593 MEKAVQLHHAM-LKGFL 608



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 5/104 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
              + G   EA +L   + D   +PD + ++ +I         +EA++++  ML  G+ P
Sbjct: 620 GFCRLGKIEEATKLLHGMTDNDILPDYITYSTIIYEQCKRSNLQEAIKLWHTMLDKGLKP 679

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGT 199
           +   Y+ L+ G   A +     L  A +   EM+ +GMR N  T
Sbjct: 680 DTLAYSFLVHGCCIAGE-----LEKAFELRDEMIRRGMRSNHVT 718


>gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score = 90.1 bits (222), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 49/139 (35%), Positives = 76/139 (54%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DAL KD    EA  LF ++K +G  P V+++T++I  +   G+ +EA R+F  M+  G
Sbjct: 248 IIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQG 307

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V PN  T+ VLI  L        K++ +A+  L  M+ +G+ PN  TY ++ E F     
Sbjct: 308 VQPNVVTFNVLIDVLCK----EGKVI-EAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGD 362

Query: 213 VDEARGLLQQMKAKGFVPD 231
           ++ AR L   M +KG  PD
Sbjct: 363 LNSARELFVSMPSKGCEPD 381



 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 80/165 (48%), Gaps = 18/165 (10%)

Query: 77  IFHKMRTEGLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           ++++MR  G++ +   +    + L       E L + A I  +G++PD+V +T +I+   
Sbjct: 118 LYNQMRLSGISPDCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLC 177

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKI--------LGDAQKYL 185
              +  +A  +F RM   G  PNA TY  L+KGL     GN  I        L D+  Y 
Sbjct: 178 MEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRT--GNISIALKLHQEMLNDSSLY- 234

Query: 186 MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
               G   +P   +Y+ + +A  + ++ DEAR L ++MK +G  P
Sbjct: 235 ----GINFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTP 275



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 83/185 (44%), Gaps = 10/185 (5%)

Query: 55  PPYDPFKKVVDEEPTDPRN--LQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQL 109
           P    +  ++D    D R    +++F +M+ +G+T   +    +       G   EA +L
Sbjct: 240 PVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRL 299

Query: 110 FAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169
           F ++ ++G  P+VV    +I+     G+  EA  +   M+  G+ PN  TY  LI+G   
Sbjct: 300 FNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCL 359

Query: 170 AADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFV 229
             D N+     A++  + M  KG  P+   YT +   + +  KV+EA  L   M   G  
Sbjct: 360 VGDLNS-----ARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKR 414

Query: 230 PDEKA 234
           PD K 
Sbjct: 415 PDVKT 419



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 68/156 (43%), Gaps = 8/156 (5%)

Query: 86  LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVF 145
           LT N+  + +     G  + A +LF  +  KG  PDV+ +T +I  Y    + +EA++++
Sbjct: 348 LTYNS--LIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLY 405

Query: 146 MRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFE 205
             ML  G  P+  TY  L+ GL          +GDA+K    M   G+  +   Y     
Sbjct: 406 NGMLQVGKRPDVKTYGALLTGLFQGGK-----VGDAKKLFGVMKVYGIPGDLYIYGIFLN 460

Query: 206 AFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
              +   + EA  L  ++K+     D +     LID
Sbjct: 461 GLCKNGCLFEAMELFNKLKSYNIKLDIECF-NCLID 495



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 5/96 (5%)

Query: 76  EIFHKMRTEGLTNNAVKMF----DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           E+F+K+++  +  + ++ F    D L K G    A +LF ++  +   PDVV +  +I  
Sbjct: 473 ELFNKLKSYNIKLD-IECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHE 531

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
           +   GQ  +A  +F +M  +G  P+  TYA LI+G 
Sbjct: 532 FCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGF 567



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/131 (22%), Positives = 56/131 (42%), Gaps = 5/131 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
             + L K+G   EA++LF ++K      D+     +I+    AG+ + A  +F ++    
Sbjct: 458 FLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEE 517

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+  TY ++I             +  A     +M   G  P+  TY  +   F  ++K
Sbjct: 518 LQPDVVTYNIMIHEFCRGGQ-----VVKANILFQKMEKNGCTPDKITYATLIRGFFESKK 572

Query: 213 VDEARGLLQQM 223
           +++   LL  M
Sbjct: 573 LEKVVELLHMM 583



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/196 (20%), Positives = 78/196 (39%), Gaps = 33/196 (16%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D  + +E+F  M ++G   + +    + +   K     EA++L+  +   G  PDV  + 
Sbjct: 362 DLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYG 421

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA------------------ 168
           A++      G+  +A ++F  M   G+  + Y Y + + GL                   
Sbjct: 422 ALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSY 481

Query: 169 ----------AAADGNAKI--LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
                        DG  K   L  A +   ++  + ++P+  TY  +   F R  +V +A
Sbjct: 482 NIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKA 541

Query: 217 RGLLQQMKAKGFVPDE 232
             L Q+M+  G  PD+
Sbjct: 542 NILFQKMEKNGCTPDK 557


>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g02150-like [Cucumis
           sativus]
          Length = 822

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 50/164 (30%), Positives = 86/164 (52%), Gaps = 9/164 (5%)

Query: 71  PRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           PR   E F +M+  GL  N V    + DA  K+G+   A++L   ++  G +P+   +T+
Sbjct: 317 PRAF-EYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTS 375

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           +I+A   AG   EA ++   ML +GV  N  TY  L+ GL  A       + +A++    
Sbjct: 376 LIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGR-----MIEAEEVFRS 430

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           M+  G+ PN   YTA+   +++A+++++A  +L+QM      PD
Sbjct: 431 MLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPD 474



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 5/140 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M D L K+G    + +LF Q+++ G  PDVV + ++I+ Y   G  +E   +F  M   G
Sbjct: 236 MIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVG 295

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  TY  LI           + +  A +Y  EM   G++PN  TY+ + +AF +   
Sbjct: 296 CVPDIITYNGLINCYC-----KFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGM 350

Query: 213 VDEARGLLQQMKAKGFVPDE 232
           +  A  LL  M+  G +P+E
Sbjct: 351 MQGAIKLLXDMRRTGLLPNE 370



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 64/255 (25%), Positives = 111/255 (43%), Gaps = 48/255 (18%)

Query: 28  NATLQRSLSSSSDQPTKKYVN--TKSKLPPPYDPFKKVVDE--EPTDPRNLQEIFHKMRT 83
           N  L R   S + Q  +K+ N    + + P    +  ++D   +  D  N + +F +MR 
Sbjct: 199 NFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMRE 258

Query: 84  EGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPD------------------- 121
            GL+ + V    + D   K G   E   LF ++KD G +PD                   
Sbjct: 259 MGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPR 318

Query: 122 ----------------VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
                           VV ++ +I+A+   G  + A+++   M  +G+ PN +TY  LI 
Sbjct: 319 AFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLID 378

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
                A+  A  L +A K L +M+  G++ N  TYTA+ +   +A ++ EA  + + M  
Sbjct: 379 -----ANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLK 433

Query: 226 KGFVPDEKAVKEALI 240
            G  P+++ V  AL+
Sbjct: 434 DGISPNQQ-VYTALV 447



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 44/137 (32%), Positives = 66/137 (48%), Gaps = 6/137 (4%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           E   +  ++K +G   + V  T +I+AY  AG+  +AL  F  M   GV     TY VLI
Sbjct: 493 ETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLI 552

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            GL  A      I+  A  Y   M+  G++PN   YT++ +       ++ A+ L  +M+
Sbjct: 553 DGLCEAG-----IVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQ 607

Query: 225 AKGFVPDEKAVKEALID 241
            +G  PD  A   ALID
Sbjct: 608 CRGMTPDITAFT-ALID 623



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/158 (29%), Positives = 79/158 (50%), Gaps = 11/158 (6%)

Query: 72  RNLQE---IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAH 125
           R L+E   I  +M++ G++ N V    + DA  K G + +AL  F +++D G    +V +
Sbjct: 489 RKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTY 548

Query: 126 TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185
             +I+    AG  + A+  F RML+ G+ PN   Y  LI GL          +  A+K  
Sbjct: 549 CVLIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCX-----NNCIESAKKLF 603

Query: 186 MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
            EM  +GM P+   +TA+ +  ++   + EA  L+ +M
Sbjct: 604 DEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRM 641



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 72/139 (51%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +F    + GL  EA + F+++++   +P   +   ++   + +G G+   + F  M+ +G
Sbjct: 166 LFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDMIGAG 225

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +AP+ +TY V+I  L    D     L ++++  ++M   G+ P+  TY ++ + + +   
Sbjct: 226 IAPSVFTYNVMIDYLCKEGD-----LENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGS 280

Query: 213 VDEARGLLQQMKAKGFVPD 231
           ++E   L  +MK  G VPD
Sbjct: 281 LEEVASLFNEMKDVGCVPD 299



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 72/156 (46%), Gaps = 8/156 (5%)

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           + F +M + GL  N      + D L  +     A +LF +++ +G  PD+ A TA+I+  
Sbjct: 566 DYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGMTPDITAFTALIDGN 625

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G  +EAL +  RM    +  + + Y  L+ G +   +     L  A+K+  EM+ KG
Sbjct: 626 LKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGE-----LHQARKFFNEMIEKG 680

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
           + P       +   + +  ++DEA  L  +M+   +
Sbjct: 681 ILPEEVLCICLLREYYKRGQLDEAIELKNEMERMAY 716


>gi|115475796|ref|NP_001061494.1| Os08g0300700 [Oryza sativa Japonica Group]
 gi|34015356|gb|AAQ56545.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015369|gb|AAQ56557.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|35215067|dbj|BAC92425.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113623463|dbj|BAF23408.1| Os08g0300700 [Oryza sativa Japonica Group]
 gi|215678779|dbj|BAG95216.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|258644436|dbj|BAI39696.1| putative fertility restorer [Oryza sativa Indica Group]
          Length = 735

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 95/178 (53%), Gaps = 15/178 (8%)

Query: 73  NLQEIFHKMRT-EGLTNNAV--------KMFDALSKDGLTHEALQLFAQIKDKGHMPDVV 123
           N  E+ H ++  EG+  N          ++   L K G    A+ LF+++ + G  P+VV
Sbjct: 224 NAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVV 283

Query: 124 AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQK 183
            +TA+I+   + G  + A R+   M  +G+ PN +T++VLI  L        + + +AQ 
Sbjct: 284 TYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALC-----KREKVEEAQL 338

Query: 184 YLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           +L  +V KG++ N   YT++ +   +  K+D A  L+Q+M ++GFVPD  +   +LID
Sbjct: 339 FLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYS-SLID 395



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 78/173 (45%), Gaps = 9/173 (5%)

Query: 72  RNLQEIFHKMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R    +F  MR +     T+    M   L + G T EA  L  +    G  P++V + A+
Sbjct: 159 REAMAVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNAL 218

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I+ Y +AG+ + AL+VF  M  +  +PN  TY  LI GL  +       +  A      M
Sbjct: 219 IDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGK-----VERAMVLFSRM 273

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           V  G+ PN  TYTA+ +       +  A  LL  M+  G VP++      LID
Sbjct: 274 VEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFS-VLID 325



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 81/177 (45%), Gaps = 11/177 (6%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           ++IF KM   G+  + V       +  ++G   +A  +  Q+ D+G  P++V +  +I  
Sbjct: 442 KKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRG 501

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA--AAADGNAKI-----LGDAQKY 184
           YA+ G   +A   F  M+  G  PN  +Y VL++ +   +++D +  I     + D Q  
Sbjct: 502 YANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWKIADMKDLQVL 561

Query: 185 LMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           L ++  + +   A  Y+       R  +++EA+     M+     P E  V  ++ID
Sbjct: 562 LEDITERQLPLAADIYSCFIRCLCRVDRLEEAKHFFMGMQNANLTPSED-VYTSIID 617



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 77/162 (47%), Gaps = 8/162 (4%)

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+  KM +EG   +A     + D L +     +A  +   + +KG     V +T +I+  
Sbjct: 373 ELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDEL 432

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
                 +   ++F +M+A+G+ P+  TY V ++  +   +G  +   DA+  +++MV +G
Sbjct: 433 VREVGSEGPKKIFDKMIATGINPDIVTYTVFVR--SYCEEGRME---DAESMIVQMVDRG 487

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
           + PN  TY  +   +     V +A    + M  KG+ P+E +
Sbjct: 488 VFPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDS 529



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 74/188 (39%), Gaps = 33/188 (17%)

Query: 98  SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA 157
            + G+   A ++F  +  +G +     +TA++     AG  +EA+ VF+ M A   AP+ 
Sbjct: 118 CRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPDT 177

Query: 158 YTYAVLIKGLAAAA----------------------------DG--NAKILGDAQKYLME 187
           + YA ++ GL  A                             DG  NA  +  A K    
Sbjct: 178 HVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEG 237

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGF 247
           M G    PN  TYT +     ++ KV+ A  L  +M   G  P+      ALI  +GQ  
Sbjct: 238 MDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPN-VVTYTALI--QGQCN 294

Query: 248 RGVINILF 255
            G +   F
Sbjct: 295 EGHLQCAF 302



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/141 (21%), Positives = 67/141 (47%), Gaps = 9/141 (6%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K G    A +L  ++  +G +PD  +++++I+      +  +A  +   M+  G
Sbjct: 358 LIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKG 417

Query: 153 VAPNAYTYAVLIKGLA--AAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
           +  +  TY ++I  L     ++G  KI         +M+  G+ P+  TYT    ++   
Sbjct: 418 IQASPVTYTIIIDELVREVGSEGPKKIFD-------KMIATGINPDIVTYTVFVRSYCEE 470

Query: 211 QKVDEARGLLQQMKAKGFVPD 231
            ++++A  ++ QM  +G  P+
Sbjct: 471 GRMEDAESMIVQMVDRGVFPN 491



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 59/136 (43%), Gaps = 6/136 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A Q    +   G  PD  A+T+ +  Y  AG    A RVF+ M   G    A+TY  L+ 
Sbjct: 91  AKQHLTSLLHAGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLH 150

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           GL  A      ++ +A    + M      P+   Y  +      A + +EA  LL++  +
Sbjct: 151 GLLGAG-----MVREAMAVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMS 205

Query: 226 KGFVPDEKAVKEALID 241
            GF P+   V  ALID
Sbjct: 206 NGFEPN-IVVYNALID 220



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 5/107 (4%)

Query: 125 HTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKY 184
           +T +I AY  AG    A +    +L +G+AP++Y Y   + G   A      +L  A + 
Sbjct: 75  YTTLINAYCLAGDIPAAKQHLTSLLHAGLAPDSYAYTSFVLGYCRAG-----MLTHACRV 129

Query: 185 LMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            + M  +G    A TYTA+    + A  V EA  +   M+A    PD
Sbjct: 130 FVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPD 176


>gi|125561029|gb|EAZ06477.1| hypothetical protein OsI_28715 [Oryza sativa Indica Group]
          Length = 621

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 95/178 (53%), Gaps = 15/178 (8%)

Query: 73  NLQEIFHKMRT-EGLTNNAV--------KMFDALSKDGLTHEALQLFAQIKDKGHMPDVV 123
           N  E+ H ++  EG+  N          ++   L K G    A+ LF+++ + G  P+VV
Sbjct: 224 NAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVV 283

Query: 124 AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQK 183
            +TA+I+   + G  + A R+   M  +G+ PN +T++VLI  L        + + +AQ 
Sbjct: 284 TYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALC-----KREKVEEAQL 338

Query: 184 YLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           +L  +V KG++ N   YT++ +   +  K+D A  L+Q+M ++GFVPD  +   +LID
Sbjct: 339 FLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYS-SLID 395



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 78/173 (45%), Gaps = 9/173 (5%)

Query: 72  RNLQEIFHKMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R    +F  MR +     T+    M   L + G T EA  L  +    G  P++V + A+
Sbjct: 159 REAMTVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNAL 218

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I+ Y +AG+ + AL+VF  M  +  +PN  TY  LI GL  +       +  A      M
Sbjct: 219 IDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGK-----VERAMVLFSRM 273

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           V  G+ PN  TYTA+ +       +  A  LL  M+  G VP++      LID
Sbjct: 274 VEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFS-VLID 325



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 81/177 (45%), Gaps = 11/177 (6%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           ++IF KM   G+  + V       +  ++G   +A  +  Q+ D+G  P++V +  +I  
Sbjct: 442 KKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRG 501

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA--AAADGNAKI-----LGDAQKY 184
           YA+ G   +A   F  M+  G  PN  +Y VL++ +   +++D +  I     + D Q  
Sbjct: 502 YANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWKIADMKDLQVL 561

Query: 185 LMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           L ++  + +   A  Y+       R  +++EA+     M+     P E  V  ++ID
Sbjct: 562 LEDITERQLPLAADIYSCFIRCLCRVDRLEEAKHFFMGMQNANLTPSED-VYTSIID 617



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 77/162 (47%), Gaps = 8/162 (4%)

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+  KM +EG   +A     + D L +     +A  +   + +KG     V +T +I+  
Sbjct: 373 ELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDEL 432

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
                 +   ++F +M+A+G+ P+  TY V ++  +   +G  +   DA+  +++MV +G
Sbjct: 433 VREVGSEGPKKIFDKMIATGINPDIVTYTVFVR--SYCEEGRME---DAESMIVQMVDRG 487

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
           + PN  TY  +   +     V +A    + M  KG+ P+E +
Sbjct: 488 VFPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDS 529



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 74/188 (39%), Gaps = 33/188 (17%)

Query: 98  SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA 157
            + G+   A ++F  +  +G +     +TA++     AG  +EA+ VF+ M A   AP+ 
Sbjct: 118 CRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMTVFVGMRADSCAPDT 177

Query: 158 YTYAVLIKGLAAAA----------------------------DG--NAKILGDAQKYLME 187
           + YA ++ GL  A                             DG  NA  +  A K    
Sbjct: 178 HVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEG 237

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGF 247
           M G    PN  TYT +     ++ KV+ A  L  +M   G  P+      ALI  +GQ  
Sbjct: 238 MDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPN-VVTYTALI--QGQCN 294

Query: 248 RGVINILF 255
            G +   F
Sbjct: 295 EGHLQCAF 302



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/142 (21%), Positives = 67/142 (47%), Gaps = 9/142 (6%)

Query: 92  KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
            + D L K G    A +L  ++  +G +PD  +++++I+      +  +A  +   M+  
Sbjct: 357 SLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEK 416

Query: 152 GVAPNAYTYAVLIKGLA--AAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
           G+  +  TY ++I  L     ++G  KI         +M+  G+ P+  TYT    ++  
Sbjct: 417 GIQASPVTYTIIIDELVREVGSEGPKKIFD-------KMIATGINPDIVTYTVFVRSYCE 469

Query: 210 AQKVDEARGLLQQMKAKGFVPD 231
             ++++A  ++ QM  +G  P+
Sbjct: 470 EGRMEDAESMIVQMVDRGVFPN 491



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 59/136 (43%), Gaps = 6/136 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A Q    +   G  PD  A+T+ +  Y  AG    A RVF+ M   G    A+TY  L+ 
Sbjct: 91  AKQHLTSLLHAGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLH 150

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           GL  A      ++ +A    + M      P+   Y  +      A + +EA  LL++  +
Sbjct: 151 GLLGAG-----MVREAMTVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMS 205

Query: 226 KGFVPDEKAVKEALID 241
            GF P+   V  ALID
Sbjct: 206 NGFEPN-IVVYNALID 220



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 5/107 (4%)

Query: 125 HTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKY 184
           +T +I AY  AG    A +    +L +G+AP++Y Y   + G   A      +L  A + 
Sbjct: 75  YTTLINAYCLAGDIPAAKQHLTSLLHAGLAPDSYAYTSFVLGYCRAG-----MLTHACRV 129

Query: 185 LMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            + M  +G    A TYTA+    + A  V EA  +   M+A    PD
Sbjct: 130 FVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMTVFVGMRADSCAPD 176


>gi|222640310|gb|EEE68442.1| hypothetical protein OsJ_26820 [Oryza sativa Japonica Group]
          Length = 621

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 95/178 (53%), Gaps = 15/178 (8%)

Query: 73  NLQEIFHKMRT-EGLTNNAV--------KMFDALSKDGLTHEALQLFAQIKDKGHMPDVV 123
           N  E+ H ++  EG+  N          ++   L K G    A+ LF+++ + G  P+VV
Sbjct: 224 NAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVV 283

Query: 124 AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQK 183
            +TA+I+   + G  + A R+   M  +G+ PN +T++VLI  L        + + +AQ 
Sbjct: 284 TYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALC-----KREKVEEAQL 338

Query: 184 YLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           +L  +V KG++ N   YT++ +   +  K+D A  L+Q+M ++GFVPD  +   +LID
Sbjct: 339 FLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYS-SLID 395



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 78/173 (45%), Gaps = 9/173 (5%)

Query: 72  RNLQEIFHKMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R    +F  MR +     T+    M   L + G T EA  L  +    G  P++V + A+
Sbjct: 159 REAMAVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNAL 218

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I+ Y +AG+ + AL+VF  M  +  +PN  TY  LI GL  +       +  A      M
Sbjct: 219 IDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGK-----VERAMVLFSRM 273

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           V  G+ PN  TYTA+ +       +  A  LL  M+  G VP++      LID
Sbjct: 274 VEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFS-VLID 325



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 77/162 (47%), Gaps = 8/162 (4%)

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+  KM +EG   +A     + D L +     +A  +   + +KG     V +T +I+  
Sbjct: 373 ELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDEL 432

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
                 +   ++F +M+A+G+ P+  TY V ++  +   +G  +   DA+  +++MV +G
Sbjct: 433 VREVGSEGPKKIFDKMIATGINPDIVTYTVFVR--SYCEEGRME---DAESMIVQMVDRG 487

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
           + PN  TY  +   +     V +A    + M  KG+ P+E +
Sbjct: 488 VFPNLVTYNTLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDS 529



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 5/109 (4%)

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
           ++F ++   G  PD+V +T  + +Y   G+ ++A  + ++M+  GV PN  TY  LI+G 
Sbjct: 443 KIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGY 502

Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
           A     N  ++  A      MVGKG +PN  +YT +    V+    D +
Sbjct: 503 A-----NLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNS 546



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 74/188 (39%), Gaps = 33/188 (17%)

Query: 98  SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA 157
            + G+   A ++F  +  +G +     +TA++     AG  +EA+ VF+ M A   AP+ 
Sbjct: 118 CRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPDT 177

Query: 158 YTYAVLIKGLAAAA----------------------------DG--NAKILGDAQKYLME 187
           + YA ++ GL  A                             DG  NA  +  A K    
Sbjct: 178 HVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEG 237

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGF 247
           M G    PN  TYT +     ++ KV+ A  L  +M   G  P+      ALI  +GQ  
Sbjct: 238 MDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPN-VVTYTALI--QGQCN 294

Query: 248 RGVINILF 255
            G +   F
Sbjct: 295 EGHLQCAF 302



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/141 (21%), Positives = 67/141 (47%), Gaps = 9/141 (6%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K G    A +L  ++  +G +PD  +++++I+      +  +A  +   M+  G
Sbjct: 358 LIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKG 417

Query: 153 VAPNAYTYAVLIKGLA--AAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
           +  +  TY ++I  L     ++G  KI         +M+  G+ P+  TYT    ++   
Sbjct: 418 IQASPVTYTIIIDELVREVGSEGPKKIFD-------KMIATGINPDIVTYTVFVRSYCEE 470

Query: 211 QKVDEARGLLQQMKAKGFVPD 231
            ++++A  ++ QM  +G  P+
Sbjct: 471 GRMEDAESMIVQMVDRGVFPN 491



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 63/149 (42%), Gaps = 6/149 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +A    G    A Q    +   G  PD  A+T+ +  Y  AG    A RVF+ M   G
Sbjct: 78  LINAYCLAGDIPAAKQHLTSLLHAGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRG 137

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
               A+TY  L+ GL  A      ++ +A    + M      P+   Y  +      A +
Sbjct: 138 CLRTAFTYTALLHGLLGAG-----MVREAMAVFVGMRADSCAPDTHVYATMVHGLCEAGR 192

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALID 241
            +EA  LL++  + GF P+   V  ALID
Sbjct: 193 TEEAEVLLEEAMSNGFEPN-IVVYNALID 220



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 5/107 (4%)

Query: 125 HTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKY 184
           +T +I AY  AG    A +    +L +G+AP++Y Y   + G   A      +L  A + 
Sbjct: 75  YTTLINAYCLAGDIPAAKQHLTSLLHAGLAPDSYAYTSFVLGYCRAG-----MLTHACRV 129

Query: 185 LMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            + M  +G    A TYTA+    + A  V EA  +   M+A    PD
Sbjct: 130 FVLMPLRGCLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPD 176


>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 90/181 (49%), Gaps = 11/181 (6%)

Query: 56  PYDPFKKVVDEEPTDPRNLQE---IFHKMRTEGL---TNNAVKMFDALSKDGLTHEALQL 109
           P +P   V+        NL E   IF  +   G+             L K+G   EAL++
Sbjct: 288 PNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKV 347

Query: 110 FAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169
           F+++K+KG +PDV  ++++I  +   G+ ++A  +   M   G+APN + Y  L+ GL  
Sbjct: 348 FSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCK 407

Query: 170 AADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFV 229
           + D     +  A+K    M  KG+ P++ TY+ + + + +++ V EA  L  +M +KG  
Sbjct: 408 SGD-----IQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQ 462

Query: 230 P 230
           P
Sbjct: 463 P 463



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 84/161 (52%), Gaps = 12/161 (7%)

Query: 76  EIFHKMRTEGLTNNAVKMFDALSKDGLTHE-----ALQLFAQIKDKGHMPDVVAHTAVIE 130
           E+  +M    L  +AV  + A+  +GL H      A +L  ++   G  P+VV ++ +I 
Sbjct: 136 ELLDEMEKRNLVPSAVS-YGAMI-NGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIM 193

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
            YAS G+ +EA R+   M  SGVAP+ + Y  +I  L+ A       + +A  YL+E+ G
Sbjct: 194 GYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGK-----MEEASTYLLEIQG 248

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +G++P+A T+ A    + +  K+ EA     +M   G +P+
Sbjct: 249 RGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPN 289



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 9/159 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+  +M  +G+  N      + D L K G    A +LF  + +KG  PD V ++ +I+ Y
Sbjct: 381 ELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGY 440

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             +    EA  +F  M + GV P+++ Y  L+ G     D     +  A     EM+ KG
Sbjct: 441 CKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGD-----MEKAMNLFREMLQKG 495

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
                 ++  + + + ++ K+ EA  L Q+M AK  +PD
Sbjct: 496 FATTL-SFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPD 533



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 73/160 (45%), Gaps = 14/160 (8%)

Query: 78  FHKMRTEGLT-NNAVK--MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F +M   GL  NN +   + +   K G   EAL +F  +   G +PDV   +A I     
Sbjct: 278 FDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLK 337

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM---EMVGK 191
            G+ +EAL+VF  +   G+ P+ +TY+ LI G            G+ +K      EM  K
Sbjct: 338 NGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQ--------GEVEKAFELHDEMCLK 389

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G+ PN   Y A+ +   ++  +  AR L   M  KG  PD
Sbjct: 390 GIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPD 429



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 64/139 (46%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   LSK G   EA     +I+ +G  PD V   A I  Y+  G+  EA + F  ML  G
Sbjct: 226 IISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHG 285

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN   Y VLI G   A +     L +A      +   G+ P+  T +A     ++  +
Sbjct: 286 LMPNNPLYTVLINGHFKAGN-----LMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGR 340

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V EA  +  ++K KG VPD
Sbjct: 341 VQEALKVFSELKEKGLVPD 359



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 5/127 (3%)

Query: 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
           +EA   F +++  G  PD  A +A+I+ +   G   E LR+   M++ G+  N  TY VL
Sbjct: 27  NEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVL 86

Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           I GL          +  A + L  M+  G +PN+ T+  + E + R   +  A  LL +M
Sbjct: 87  IHGLCKFGK-----MEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEM 141

Query: 224 KAKGFVP 230
           + +  VP
Sbjct: 142 EKRNLVP 148



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 79/180 (43%), Gaps = 24/180 (13%)

Query: 70  DPRNLQEIFHKMRTEGL--TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           D      +F +M  +G   T +   + D   K     EA QLF ++  K  MPD V +T 
Sbjct: 480 DMEKAMNLFREMLQKGFATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTT 539

Query: 128 VIEAYASAGQGKEA-----------------LRVFMRMLASGVAPNAYTYAVLIKGLAAA 170
           VI+ +  AG+ +EA                   +F +M+A GV P+  TY ++I   A  
Sbjct: 540 VIDWHCKAGKMEEANLLFKEMQERNLIVDTVFALFEKMVAKGVKPDEVTYGLVI--YAHC 597

Query: 171 ADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
            + N   L +A K   E+VGKGM      +  +  A  + + + EA  LL +M   G  P
Sbjct: 598 KEDN---LVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKP 654



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 73/159 (45%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           EI   M T G   N+     + +   ++     AL+L  +++ +  +P  V++ A+I   
Sbjct: 101 EILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGL 160

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
                   A ++  +M  SG+ PN   Y+ LI G A+        + +A++ L  M   G
Sbjct: 161 CHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGR-----IEEARRLLDGMSCSG 215

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + P+   Y A+     +A K++EA   L +++ +G  PD
Sbjct: 216 VAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPD 254



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 75/187 (40%), Gaps = 33/187 (17%)

Query: 78  FHKMRTEGLT---NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F +M+  GL    N    + D   ++G   E L++   +   G   +++ +  +I     
Sbjct: 33  FEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCK 92

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA-------------------------- 168
            G+ ++A  +   M+  G  PN+ T+ +LI+G                            
Sbjct: 93  FGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVS 152

Query: 169 --AAADG--NAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
             A  +G  + K L  A K L +M   G++PN   Y+ +   +    +++EAR LL  M 
Sbjct: 153 YGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMS 212

Query: 225 AKGFVPD 231
             G  PD
Sbjct: 213 CSGVAPD 219



 Score = 42.4 bits (98), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 5/77 (6%)

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           G+ PN YTY ++  GL       AK + +A+    EM   G++P+    +A+ + F+R  
Sbjct: 5   GLVPNTYTYTIITAGLC-----RAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREG 59

Query: 212 KVDEARGLLQQMKAKGF 228
            +DE   +   M + G 
Sbjct: 60  DIDEVLRIKDVMVSCGI 76



 Score = 41.6 bits (96), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           KG+ PN  TYT +     RA++++EA+   ++M+  G  PD  A   ALID
Sbjct: 4   KGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACS-ALID 53


>gi|356561401|ref|XP_003548970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 447

 Score = 89.7 bits (221), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 81/156 (51%), Gaps = 6/156 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L KD + ++A   F+++  +G  P+V+ ++ +I  +  AGQ   A  +   M+   
Sbjct: 211 IIDGLCKDKIVNQAYDFFSEMNARGIFPNVITYSTLIWGFCLAGQLMGAFSLLNEMILKN 270

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN YTY +LI  L    +G  K   +A+K L EM  KG   +  TY +V +   ++Q 
Sbjct: 271 INPNVYTYNILIDAL--CKEGKVK---EAKKLLAEMHHKGQPADVVTYNSVLDGLCKSQN 325

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFR 248
           +D+A  L  +MK  G  P+ K    ALID   +G R
Sbjct: 326 LDKATALFMKMKKWGIQPN-KYTYTALIDGLCKGGR 360



 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 77/154 (50%), Gaps = 9/154 (5%)

Query: 78  FH-KMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           FH K+  +G   N V    + + L K G T  A++L   I+D+   PDVV ++ +I+   
Sbjct: 157 FHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPDVVMYSTIIDGLC 216

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
                 +A   F  M A G+ PN  TY+ LI G   A     +++G A   L EM+ K +
Sbjct: 217 KDKIVNQAYDFFSEMNARGIFPNVITYSTLIWGFCLA----GQLMG-AFSLLNEMILKNI 271

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
            PN  TY  + +A  +  KV EA+ LL +M  KG
Sbjct: 272 NPNVYTYNILIDALCKEGKVKEAKKLLAEMHHKG 305



 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 68/139 (48%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DAL K+G   EA +L A++  KG   DVV + +V++    +    +A  +FM+M   G
Sbjct: 281 LIDALCKEGKVKEAKKLLAEMHHKGQPADVVTYNSVLDGLCKSQNLDKATALFMKMKKWG 340

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN YTY  LI GL          L +AQK    ++ KG   +  TY  +     +   
Sbjct: 341 IQPNKYTYTALIDGLCKGGR-----LKNAQKLFQHLLVKGCCIDVRTYNVMISGLCKEGM 395

Query: 213 VDEARGLLQQMKAKGFVPD 231
            D+A  +  +M+  G +P+
Sbjct: 396 FDKALAMKSKMEDNGCIPN 414



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/155 (20%), Positives = 65/155 (41%), Gaps = 8/155 (5%)

Query: 80  KMRTEGLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           +M  +G+  N V +    +     G    +  +  +I   G+ PD +    +++     G
Sbjct: 90  QMEVKGIEPNLVTLNILINCFCHLGQMAFSFSVLGKILKLGYQPDTITLNTLMKGLCLKG 149

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196
           + K +L    +++A G   N  +Y  L+ GL    +        A K L  +  +  RP+
Sbjct: 150 EVKRSLHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRC-----AVKLLRMIEDRSTRPD 204

Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              Y+ + +   + + V++A     +M A+G  P+
Sbjct: 205 VVMYSTIIDGLCKDKIVNQAYDFFSEMNARGIFPN 239


>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
 gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
          Length = 460

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 84/162 (51%), Gaps = 8/162 (4%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++  KM  +G   N V    + D+L KD L  EA+  F+++  +G  PDV  +++++  +
Sbjct: 66  QLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGF 125

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
            + G+  EA  +F +M+   V PN  T+ +LI GL        +++ +A      M  KG
Sbjct: 126 CNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLC-----KKRMISEAWLVFETMTEKG 180

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
           + P+  TY A+ + +    ++DEA+ L   M  KG  P+ ++
Sbjct: 181 LEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRS 222



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 78/169 (46%), Gaps = 8/169 (4%)

Query: 71  PRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P+  QE+  +M + GL  N +    + D L K G   EA +L   +++    P++  +T 
Sbjct: 271 PQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTI 330

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           +IE   + G+ + A  +F  +   G+ P   TY V+I GL      N     +A +   E
Sbjct: 331 LIEGMCTFGKLEAARELFSNLFVKGIQPTVVTYTVMISGLLKGGLSN-----EACELFRE 385

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK 236
           M   G  PN+ TY  + + F+R      A  L+++M  KGF  D    +
Sbjct: 386 MAVNGCLPNSCTYNVIIQGFLRNGDTPNAVRLIEEMVGKGFSADSSTFR 434



 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 86/194 (44%), Gaps = 25/194 (12%)

Query: 58  DPFKKVVDEE-PTDPRNLQEIFHKMRTEGLTNNAVKMF-------------------DAL 97
           D F ++V E  P D      I H     G  N A  +F                   D L
Sbjct: 101 DFFSEMVKEGIPPDVFTYSSILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGL 160

Query: 98  SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA 157
            K  +  EA  +F  + +KG  PDV  + A+++ Y S  Q  EA ++F  M   G APN 
Sbjct: 161 CKKRMISEAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNV 220

Query: 158 YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
            +Y +LI G   +       + +A+  L EM  K + P+  TY+ +   F +  +  EA+
Sbjct: 221 RSYNILINGHCKSGR-----IDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQ 275

Query: 218 GLLQQMKAKGFVPD 231
            LL++M + G +P+
Sbjct: 276 ELLKEMCSYGLLPN 289



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 69/137 (50%), Gaps = 6/137 (4%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +A++LF ++   GH PDV+ ++ +I      G    AL++  +M   G  PN   Y  +I
Sbjct: 28  DAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMALQLLKKMEEKGCKPNVVAYNTII 87

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
             L        +++ +A  +  EMV +G+ P+  TY+++   F    +V+EA  L +QM 
Sbjct: 88  DSLC-----KDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGFCNLGRVNEATSLFKQMV 142

Query: 225 AKGFVPDEKAVKEALID 241
            +  +P+ K     LID
Sbjct: 143 ERNVIPN-KVTFTILID 158



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 75/149 (50%), Gaps = 6/149 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K G T  ALQL  ++++KG  P+VVA+  +I++        EA+  F  M+  G
Sbjct: 51  IINGLCKMGNTTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEG 110

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+ +TY+ ++ G       N   + +A     +MV + + PN  T+T + +   + + 
Sbjct: 111 IPPDVFTYSSILHGFC-----NLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRM 165

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALID 241
           + EA  + + M  KG  PD      AL+D
Sbjct: 166 ISEAWLVFETMTEKGLEPDVYTYN-ALVD 193



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 74/160 (46%), Gaps = 10/160 (6%)

Query: 75  QEIFHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           Q++F+ M  +G   N V+ ++ L     K G   EA  L A++  K   PD+  ++ ++ 
Sbjct: 205 QKLFNIMDRKGCAPN-VRSYNILINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMR 263

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
            +   G+ +EA  +   M + G+ PN  TY++++ GL          L +A + L  M  
Sbjct: 264 GFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGH-----LDEAFELLKAMQE 318

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
             + PN   YT + E      K++ AR L   +  KG  P
Sbjct: 319 SKIEPNIFIYTILIEGMCTFGKLEAARELFSNLFVKGIQP 358


>gi|334184106|ref|NP_178323.3| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546751|sp|P0C894.1|PP143_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g02150
 gi|330250459|gb|AEC05553.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 761

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 85/159 (53%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E + +M+  GL  N V    + DA  K+G+  +A++ +  ++  G +P+   +T++I+A 
Sbjct: 353 EFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDAN 412

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G   +A R+   ML  GV  N  TY  LI GL      +A+ + +A++   +M   G
Sbjct: 413 CKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLC-----DAERMKEAEELFGKMDTAG 467

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + PN  +Y A+   FV+A+ +D A  LL ++K +G  PD
Sbjct: 468 VIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPD 506



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 78/148 (52%), Gaps = 11/148 (7%)

Query: 86  LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVF 145
           +T NA  + +   K G     L+ + ++K  G  P+VV+++ +++A+   G  ++A++ +
Sbjct: 333 ITYNA--LINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFY 390

Query: 146 MRMLASGVAPNAYTYAVLIKGLAAAADGNAKI--LGDAQKYLMEMVGKGMRPNAGTYTAV 203
           + M   G+ PN YTY  LI       D N KI  L DA +   EM+  G+  N  TYTA+
Sbjct: 391 VDMRRVGLVPNEYTYTSLI-------DANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTAL 443

Query: 204 FEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +    A+++ EA  L  +M   G +P+
Sbjct: 444 IDGLCDAERMKEAEELFGKMDTAGVIPN 471



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 69/149 (46%), Gaps = 6/149 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M D + K+G    A  LF ++K +G +PD V + ++I+ +   G+  + +  F  M    
Sbjct: 268 MIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMC 327

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  TY  LI             L    ++  EM G G++PN  +Y+ + +AF +   
Sbjct: 328 CEPDVITYNALINCFCKFGK-----LPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGM 382

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALID 241
           + +A      M+  G VP+E     +LID
Sbjct: 383 MQQAIKFYVDMRRVGLVPNEYTYT-SLID 410



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 9/145 (6%)

Query: 76  EIFHKMRTE-GLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + F+++  + GL  NA     M D L KD     A  LF Q+  KG +PD  A+T++++ 
Sbjct: 598 DYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDG 657

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G   EAL +  +M   G+  +   Y  L+ GL+     +   L  A+ +L EM+G+
Sbjct: 658 NFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLS-----HCNQLQKARSFLEEMIGE 712

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEA 216
           G+ P+     +V +       +DEA
Sbjct: 713 GIHPDEVLCISVLKKHYELGCIDEA 737



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 6/136 (4%)

Query: 112 QIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA 171
           ++K+ G   + + +T +++AY  +G   E L +   M    +     T+ VLI GL    
Sbjct: 532 EMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLC--- 588

Query: 172 DGNAKILGDAQKYLMEMVGK-GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
               K++  A  Y   +    G++ NA  +TA+ +   +  +V+ A  L +QM  KG VP
Sbjct: 589 --KNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVP 646

Query: 231 DEKAVKEALIDKRGQG 246
           D  A    +     QG
Sbjct: 647 DRTAYTSLMDGNFKQG 662



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 6/127 (4%)

Query: 119 MPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKIL 178
           +P      A+       G  +EA++ F +M    V P   +   L+   A     +    
Sbjct: 189 VPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTD---- 244

Query: 179 GDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEA 238
            D +++  +M+G G RP   TY  + +   +   V+ ARGL ++MK +G VPD      +
Sbjct: 245 -DVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPD-TVTYNS 302

Query: 239 LIDKRGQ 245
           +ID  G+
Sbjct: 303 MIDGFGK 309



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 83/191 (43%), Gaps = 13/191 (6%)

Query: 41  QPTKKYVNTKS-KLPPPYDPFKKVVDEEPTDPRNLQEIF---HKMRTEGLTNNAVK---M 93
           Q  K YV+ +   L P    +  ++D       NL + F   ++M   G+  N V    +
Sbjct: 385 QAIKFYVDMRRVGLVPNEYTYTSLIDAN-CKIGNLSDAFRLGNEMLQVGVEWNVVTYTAL 443

Query: 94  FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGV 153
            D L       EA +LF ++   G +P++ ++ A+I  +  A     AL +   +   G+
Sbjct: 444 IDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGI 503

Query: 154 APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV 213
            P+   Y   I GL +     A     A+  + EM   G++ N+  YT + +A+ ++   
Sbjct: 504 KPDLLLYGTFIWGLCSLEKIEA-----AKVVMNEMKECGIKANSLIYTTLMDAYFKSGNP 558

Query: 214 DEARGLLQQMK 224
            E   LL +MK
Sbjct: 559 TEGLHLLDEMK 569



 Score = 53.5 bits (127), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 12/169 (7%)

Query: 68  PTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQI-KDKGHMPDVVAHT 126
           PT+  +L +   ++  E        + D L K+ L  +A+  F +I  D G   +    T
Sbjct: 558 PTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFT 617

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
           A+I+      Q + A  +F +M+  G+ P+   Y  L+       DGN K  G+  + L 
Sbjct: 618 AMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLM-------DGNFK-QGNVLEALA 669

Query: 187 ---EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
              +M   GM+ +   YT++        ++ +AR  L++M  +G  PDE
Sbjct: 670 LRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDE 718


>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
 gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
          Length = 564

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/141 (35%), Positives = 72/141 (51%), Gaps = 9/141 (6%)

Query: 94  FDALSKDGLTHEALQLFAQIKDKGHM---PDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
            D L K  +T EA +L   ++D G +   PD V  + +I+     GQ  EA  VF  M+A
Sbjct: 151 LDGLCKQSMTAEACELMRSLRD-GSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIA 209

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
            G  PN  TY  L+ GL       A  +  A   +  MV KG+ P+  TY+ + +AF +A
Sbjct: 210 GGYVPNVITYNALVNGLC-----KADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKA 264

Query: 211 QKVDEARGLLQQMKAKGFVPD 231
            +VDEA  LL  M ++G  P+
Sbjct: 265 SRVDEALELLHGMASRGCTPN 285



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 81/164 (49%), Gaps = 13/164 (7%)

Query: 76  EIFHKMRTEGLTNNAVK----MFDAL----SKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           E+ H M + G T N +      F+ L     K G   +A  LF ++  K   PDV+   A
Sbjct: 272 ELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFGA 331

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           +I+    AGQ + A  +   M   GV PN  TY  L+ GL  +       + +A ++L E
Sbjct: 332 LIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGR-----IEEACQFLEE 386

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           MV  G  P++ TY ++  A  RA + D+A  L+ ++K+ G+ PD
Sbjct: 387 MVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPD 430



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 77/168 (45%), Gaps = 8/168 (4%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           ++I   M   G+  N V    +   L K G   EA Q   ++   G +PD + + +++ A
Sbjct: 346 RDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYA 405

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              A +  +AL++   + + G  P+  TY +L+ GL  +      I       L EMVGK
Sbjct: 406 LCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGKTEQAI-----TVLEEMVGK 460

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
           G +P++ T+ A F    R+  +     LL+ + AKG +PD       L
Sbjct: 461 GHQPDSFTFAACFSGLHRSGNLAGTMELLRVVLAKGMLPDATTCSSIL 508



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 76/155 (49%), Gaps = 11/155 (7%)

Query: 76  EIFH-KMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           EIF  +M  +G+    V    + + L K       ++LF ++ ++GH PDVV +  +I++
Sbjct: 22  EIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEELVERGHHPDVVTYNTLIDS 81

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              AG  +EA R+   M + G  PN  TY+VLI GL          + +A++ + EM  K
Sbjct: 82  LCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGR-----IDEARELIQEMTRK 136

Query: 192 G--MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
              + PN  TY +  +   +     EA  L++ ++
Sbjct: 137 SCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLR 171



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 97/218 (44%), Gaps = 15/218 (6%)

Query: 24  NTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKKVVD--EEPTDPRNLQEIFHKM 81
           N+ ++   ++S+++ + +  +   +   ++ P    F  ++D   +         +F  M
Sbjct: 148 NSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDM 207

Query: 82  RTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQG 138
              G   N +    + + L K      A  +   + DKG  PDV+ ++ +++A+  A + 
Sbjct: 208 IAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRV 267

Query: 139 KEALRVFMRMLASGVAPNAY-----TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            EAL +   M + G  PN       T+ +LI G   A  GN +    A     EMV K +
Sbjct: 268 DEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKA--GNFE---QASALFEEMVAKNL 322

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +P+  T+ A+ +   +A +V+ AR +L  M   G  P+
Sbjct: 323 QPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPN 360



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 81/152 (53%), Gaps = 8/152 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +   +M + G   +++    +  AL +   T +ALQL +++K  G  PD V +  +++  
Sbjct: 382 QFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGL 441

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             +G+ ++A+ V   M+  G  P+++T+A    GL  +  GN   L    + L  ++ KG
Sbjct: 442 WKSGKTEQAITVLEEMVGKGHQPDSFTFAACFSGLHRS--GN---LAGTMELLRVVLAKG 496

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           M P+A T +++ +   R+ K+D+ + ++++ +
Sbjct: 497 MLPDATTCSSILDWVCRSGKLDDVKAMIKEFE 528



 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 69/139 (49%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K G    A  +   + + G  P+VV + A++     +G+ +EA +    M++SG
Sbjct: 332 LIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSG 391

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P++ TY  L+  L  A+  +     DA + + E+   G  P+  TY  + +   ++ K
Sbjct: 392 CVPDSITYGSLVYALCRASRTD-----DALQLVSELKSFGWDPDTVTYNILVDGLWKSGK 446

Query: 213 VDEARGLLQQMKAKGFVPD 231
            ++A  +L++M  KG  PD
Sbjct: 447 TEQAITVLEEMVGKGHQPD 465



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 64/135 (47%), Gaps = 6/135 (4%)

Query: 93  MFDALSKDGLTHEALQLF-AQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
           +  +L + G T  AL++F  ++   G  P +V +  +I     +      + +F  ++  
Sbjct: 7   VLQSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEELVER 66

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           G  P+  TY  LI  L  A D     L +A++   +M  +G  PN  TY+ +     +  
Sbjct: 67  GHHPDVVTYNTLIDSLCKAGD-----LEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVG 121

Query: 212 KVDEARGLLQQMKAK 226
           ++DEAR L+Q+M  K
Sbjct: 122 RIDEARELIQEMTRK 136



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 73/161 (45%), Gaps = 14/161 (8%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K G   EA  +F  +   G++P+V+ + A++     A + + A  +   M+  G
Sbjct: 187 LIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKG 246

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA-----GTYTAVFEAF 207
           V P+  TY+VL+     A+      + +A + L  M  +G  PN       T+  +    
Sbjct: 247 VTPDVITYSVLVDAFCKASR-----VDEALELLHGMASRGCTPNVLVPDKVTFNILIAGA 301

Query: 208 VRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID---KRGQ 245
            +A   ++A  L ++M AK   PD      ALID   K GQ
Sbjct: 302 CKAGNFEQASALFEEMVAKNLQPDVMTFG-ALIDGLCKAGQ 341



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 55/111 (49%), Gaps = 6/111 (5%)

Query: 122 VVAHTAVIEAYASAGQGKEALRVFM-RMLASGVAPNAYTYAVLIKGLAAAADGNAKILGD 180
           V  +  V+++   AG    AL +F   M   GVAP   TY  +I GL  + D     LG 
Sbjct: 1   VADYNIVLQSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSND-----LGA 55

Query: 181 AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             +   E+V +G  P+  TY  + ++  +A  ++EAR L   M ++G VP+
Sbjct: 56  GMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPN 106


>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Vitis vinifera]
 gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 74/141 (52%), Gaps = 5/141 (3%)

Query: 91  VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
             + D+L KDGL  +  +LF ++K +G  PDVVA++++I      G+ + A  +F  M+ 
Sbjct: 242 CTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVD 301

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
            GV PN  T+ VLI  L  A       + +A   L  M+ +G  P+  TY  + + F   
Sbjct: 302 EGVHPNVVTFNVLIDALCKAGK-----MEEANHLLKLMIQRGESPDTFTYNTLIDGFCLE 356

Query: 211 QKVDEARGLLQQMKAKGFVPD 231
            ++D+AR L   M++KG   D
Sbjct: 357 GRIDDARDLFVSMESKGIETD 377



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 8/167 (4%)

Query: 72  RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R+   +F +M+   LT  +     + D L K+    EA++LF  +++    P +     +
Sbjct: 430 RDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCL 489

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I+    A + + A  +F R+   G+ PN  TY V+I GL  +       L +A+   + M
Sbjct: 490 IDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQ-----LENAKDLFLGM 544

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAV 235
             KG  PN  T+  +   F +  ++ +   LLQ+M  K F PD   +
Sbjct: 545 EEKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQEMAEKDFSPDASTI 591



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 77/168 (45%), Gaps = 9/168 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F++M  EG+  N V    + DAL K G   EA  L   +  +G  PD   +  +I+ + 
Sbjct: 295 LFNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFC 354

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G+  +A  +F+ M + G+  +A +Y VLI G   +       + +A+K   EM+ K +
Sbjct: 355 LEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGR-----MVEAKKLYREMMCKEI 409

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
            P   TY  +     R  KV +A  L  +MK     P E      L+D
Sbjct: 410 MPTVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTP-ESCTYNILLD 456



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 75/157 (47%), Gaps = 12/157 (7%)

Query: 76  EIFHKMRTEGLTNNAVKMFDALSKDGLTHE-----ALQLFAQIKDKGHMPDVVAHTAVIE 130
           E+FH +        ++++F+ L  DGL        A +LF ++  +G  P+V+ +T +I 
Sbjct: 469 ELFHYLENHDF-QPSIQIFNCLI-DGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIH 526

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
               +GQ + A  +F+ M   G APN  T+  L++G     D   K++    + L EM  
Sbjct: 527 GLCKSGQLENAKDLFLGMEEKGCAPNLVTFNTLMRGF-CQNDEMQKVV----ELLQEMAE 581

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
           K   P+A T + V +   + +K  E   LL    A+G
Sbjct: 582 KDFSPDASTISIVVDLLSKDEKYREYLHLLPTFPAQG 618



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 70/157 (44%), Gaps = 15/157 (9%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
            L +  ++  +GH P+ V  T++++      +  EA  +  +M+  G  PN  TY  L+ 
Sbjct: 146 GLAVLGEMLRRGHSPNTVTFTSLVKGLCLGSRISEATGLLRKMVRMGYRPNVVTYGTLLN 205

Query: 166 GLAAAADGNAKILGDAQKYLMEMV------GKGMRPNAGTYTAVFEAFVRAQKVDEARGL 219
           GL     GN  +   A K   EM+      G  ++PN   Y  + ++  +   +D+ + L
Sbjct: 206 GLCMT--GNTML---AVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLCKDGLIDKGKEL 260

Query: 220 LQQMKAKGFVPDEKA----VKEALIDKRGQGFRGVIN 252
             +MK +G  PD  A    +       R +G +G+ N
Sbjct: 261 FLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFN 297



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/160 (21%), Positives = 75/160 (46%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +++F  M ++G+  +AV    + +   K G   EA +L+ ++  K  MP V+ +  ++  
Sbjct: 363 RDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTG 422

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G+ ++A  +F  M    + P + TY +L+ GL          L +A +    +   
Sbjct: 423 LFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNH-----LSEAMELFHYLENH 477

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             +P+   +  + +   +A+K++ AR L  ++  +G  P+
Sbjct: 478 DFQPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPN 517



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 60/129 (46%), Gaps = 9/129 (6%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA  +F  + D    P + +   ++ A A   +  + + ++ RM   G+AP+  T  +LI
Sbjct: 75  EAFSVFNHLIDMQPTPPISSFNTLLGAVAKIKRYFDVISLYKRMSLIGLAPDFITLNILI 134

Query: 165 KGLAAA--ADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
                    D    +LG       EM+ +G  PN  T+T++ +      ++ EA GLL++
Sbjct: 135 NCYCNLNKVDFGLAVLG-------EMLRRGHSPNTVTFTSLVKGLCLGSRISEATGLLRK 187

Query: 223 MKAKGFVPD 231
           M   G+ P+
Sbjct: 188 MVRMGYRPN 196



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 66/167 (39%), Gaps = 20/167 (11%)

Query: 57  YDPFKKVVDEEPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDK 116
           +  F  ++D +PT P                ++   +  A++K     + + L+ ++   
Sbjct: 77  FSVFNHLIDMQPTPP---------------ISSFNTLLGAVAKIKRYFDVISLYKRMSLI 121

Query: 117 GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK 176
           G  PD +    +I  Y +  +    L V   ML  G +PN  T+  L+KGL   +     
Sbjct: 122 GLAPDFITLNILINCYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKGLCLGSR---- 177

Query: 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
            + +A   L +MV  G RPN  TY  +            A  L ++M
Sbjct: 178 -ISEATGLLRKMVRMGYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEM 223


>gi|297823043|ref|XP_002879404.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325243|gb|EFH55663.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 605

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 85/161 (52%), Gaps = 10/161 (6%)

Query: 80  KMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGK 139
           ++ T   TN    + D   K+G   EA +LF ++  K   P+ + +  +I AY   G+ K
Sbjct: 447 RLSTVSYTN----LIDVYCKEGNVEEAKRLFVEMSSKEVQPNAITYNVMIYAYCKQGKVK 502

Query: 140 EALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGT 199
           EA +++  M A+G+ P++YTY  LI G   A +     + +A +   EM  KG+  N+ T
Sbjct: 503 EARKLWANMKANGMDPDSYTYTSLIHGECIADN-----VDEAMRLFSEMGLKGLDQNSVT 557

Query: 200 YTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
           YT +     +A K DEA GL  ++K KG+  D K V  ALI
Sbjct: 558 YTVMISGLSKAGKSDEAFGLYDEIKRKGYTIDNK-VYTALI 597



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 71/149 (47%), Gaps = 10/149 (6%)

Query: 87  TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFM 146
            N     F+ L +     EA Q   ++ + G     V++T +I+ Y   G  +EA R+F+
Sbjct: 418 CNTIASCFNRLKR---YDEAKQWLFRMMEGGVRLSTVSYTNLIDVYCKEGNVEEAKRLFV 474

Query: 147 RMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEA 206
            M +  V PNA TY V+I   A    G  K   +A+K    M   GM P++ TYT++   
Sbjct: 475 EMSSKEVQPNAITYNVMI--YAYCKQGKVK---EARKLWANMKANGMDPDSYTYTSLIHG 529

Query: 207 FVRAQKVDEARGLLQQMKAKGFVPDEKAV 235
              A  VDEA  L  +M  KG   D+ +V
Sbjct: 530 ECIADNVDEAMRLFSEMGLKGL--DQNSV 556



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 79/165 (47%), Gaps = 8/165 (4%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D   +++I   M+ +G+  N V    + +   K+G  ++  +LF +++++G   D+  +T
Sbjct: 255 DFSGVEKILKVMKKDGVVYNKVTYTLLIELSVKNGKMNDVEKLFDEMRERGIESDIHVYT 314

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
           ++I      G  K A  +F  +   G+ P+++TY  LI G+    +     +G A+  + 
Sbjct: 315 SLISWNCRKGNIKRAFLLFDELTEKGLLPSSHTYGALIDGVCKVGE-----MGAAEILMN 369

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           EM  KG+      +  +   + R   +DEA  +   M+ KGF  D
Sbjct: 370 EMQSKGVNITQVVFNTLINGYCRKGMIDEASMIYDVMEKKGFQAD 414



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 66/142 (46%), Gaps = 9/142 (6%)

Query: 92  KMFDALSK----DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMR 147
           K FD + +    +G+  E L++F  +  KG   D  +    + A     +    L  F R
Sbjct: 136 KFFDLVFRVYVDNGMFEEGLRVFDYMVKKGLSIDERSCIVFLVAAKKRRRIDLCLEFFRR 195

Query: 148 MLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAF 207
           M+ SGV    Y+  ++++GL    +     +  ++K + E  GKG++P A TY  +  A+
Sbjct: 196 MVDSGVKITVYSLTIVVEGLCRRGE-----VEKSKKLIKEFSGKGIKPEAYTYNTIINAY 250

Query: 208 VRAQKVDEARGLLQQMKAKGFV 229
           ++ +       +L+ MK  G V
Sbjct: 251 LKHRDFSGVEKILKVMKKDGVV 272



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 68/169 (40%), Gaps = 9/169 (5%)

Query: 76  EIFHKMRTEGLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E F +M   G+      +    + L + G   ++ +L  +   KG  P+   +  +I AY
Sbjct: 191 EFFRRMVDSGVKITVYSLTIVVEGLCRRGEVEKSKKLIKEFSGKGIKPEAYTYNTIINAY 250

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
                     ++   M   GV  N  TY +LI+   +  +G    + D +K   EM  +G
Sbjct: 251 LKHRDFSGVEKILKVMKKDGVVYNKVTYTLLIE--LSVKNGK---MNDVEKLFDEMRERG 305

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           +  +   YT++     R   +  A  L  ++  KG +P       ALID
Sbjct: 306 IESDIHVYTSLISWNCRKGNIKRAFLLFDELTEKGLLPSSHTYG-ALID 353



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/193 (19%), Positives = 81/193 (41%), Gaps = 35/193 (18%)

Query: 73  NLQEIFHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           +++++F +MR  G+ ++ + ++ +L     + G    A  LF ++ +KG +P    + A+
Sbjct: 293 DVEKLFDEMRERGIESD-IHVYTSLISWNCRKGNIKRAFLLFDELTEKGLLPSSHTYGAL 351

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA-------------------- 168
           I+     G+   A  +   M + GV      +  LI G                      
Sbjct: 352 IDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLINGYCRKGMIDEASMIYDVMEKKGF 411

Query: 169 ----------AAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218
                     A+     K   +A+++L  M+  G+R +  +YT + + + +   V+EA+ 
Sbjct: 412 QADVFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVRLSTVSYTNLIDVYCKEGNVEEAKR 471

Query: 219 LLQQMKAKGFVPD 231
           L  +M +K   P+
Sbjct: 472 LFVEMSSKEVQPN 484


>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 757

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 79/159 (49%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+  +MR +GL  + V    + +   K+G  H+ L L +++  KG  P+VV +T +I   
Sbjct: 298 ELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCM 357

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             AG    A+ +F +M   G+ PN  TY  LI G          ++ +A K L EM+  G
Sbjct: 358 CKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKG-----LMNEAYKVLSEMIVSG 412

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             P+  TY A+   +    +V EA G+L+ M  +G  PD
Sbjct: 413 FSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPD 451



 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 83/160 (51%), Gaps = 8/160 (5%)

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           EIF +MR  GL  N      + D   + GL +EA ++ +++   G  P VV + A++  Y
Sbjct: 368 EIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGY 427

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+ +EA+ +   M+  G+ P+  +Y+ +I G     +     LG A +   EMV KG
Sbjct: 428 CFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERE-----LGKAFQMKEEMVEKG 482

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           + P+  TY+++ +     QK+ EA  L ++M  +G  PDE
Sbjct: 483 VLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDE 522



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 81/176 (46%), Gaps = 11/176 (6%)

Query: 80  KMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           KM  EG++ N V    + DA  K     EA+ L   +   G   +++++ +VI      G
Sbjct: 232 KMEKEGISPNVVTYNTLIDASCKKKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKG 291

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196
           +  E   +   M   G+ P+  TY  L+ G     +GN   L      L EMVGKG+ PN
Sbjct: 292 RMSEVGELVEEMRGKGLVPDEVTYNTLVNGFCK--EGN---LHQGLVLLSEMVGKGLSPN 346

Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVIN 252
             TYT +     +A  +  A  +  QM+ +G  P+E+     LID   Q  +G++N
Sbjct: 347 VVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYT-TLIDGFCQ--KGLMN 399



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 72/151 (47%), Gaps = 6/151 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA  LF ++  +G  PD V +T++I AY   G+  +ALR+   M+  G  P+  TY+VLI
Sbjct: 505 EAFDLFREMMRRGLPPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLI 564

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            GL   A         A++ L+++  +   P+  TY  + E      +     GL++   
Sbjct: 565 NGLNKKARTKV-----AKRLLLKLFYEESVPDDVTYNTLIEN-CSNNEFKSVEGLVKGFC 618

Query: 225 AKGFVPDEKAVKEALIDKRGQGFRGVINILF 255
            KG + +   V + ++ +  +    + N++ 
Sbjct: 619 MKGLMNEADRVFKTMLQRNHKPNAAIYNLMI 649



 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 5/146 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +A Q+  ++ +KG +PD V ++++I+      +  EA  +F  M+  G+ P+  TY  LI
Sbjct: 470 KAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLI 529

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
              A   DG    L  A +   EMV +G  P+  TY+ +     +  +   A+ LL ++ 
Sbjct: 530 N--AYCVDGE---LSKALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAKRLLLKLF 584

Query: 225 AKGFVPDEKAVKEALIDKRGQGFRGV 250
            +  VPD+      + +     F+ V
Sbjct: 585 YEESVPDDVTYNTLIENCSNNEFKSV 610



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/173 (22%), Positives = 76/173 (43%), Gaps = 13/173 (7%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F +M   GL  + V    + +A   DG   +AL+L  ++  +G +PD V ++ +I   
Sbjct: 508 DLFREMMRRGLPPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLINGL 567

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA----AAADGNAK------ILGDAQ 182
               + K A R+ +++      P+  TY  LI+  +     + +G  K      ++ +A 
Sbjct: 568 NKKARTKVAKRLLLKLFYEESVPDDVTYNTLIENCSNNEFKSVEGLVKGFCMKGLMNEAD 627

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAV 235
           +    M+ +  +PNA  Y  +     R   V +A  L  +++   F     AV
Sbjct: 628 RVFKTMLQRNHKPNAAIYNLMIHGHSRGGNVHKAYNLYMELEHSSFACHTVAV 680



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 67/160 (41%), Gaps = 18/160 (11%)

Query: 109 LFAQIKDKGHMPDVVAHTA-----VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
           LF  + D  H+      ++     V+++ +  G   +AL +       G AP   +Y  +
Sbjct: 114 LFRHLHDTFHLCSSPFSSSAVFDLVVKSLSRLGFVPKALTLLHLANRHGFAPTVLSYNAV 173

Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           +  L   +  N +   DA++   +MV  G+ PN  TY  +    V    +++  G +++M
Sbjct: 174 LDALLRRSSSNHRDYDDAERVFRDMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKM 233

Query: 224 KAKGFVPD-------------EKAVKEALIDKRGQGFRGV 250
           + +G  P+             +K VKEA+   R     GV
Sbjct: 234 EKEGISPNVVTYNTLIDASCKKKKVKEAMALLRAMAVGGV 273


>gi|293336971|ref|NP_001167873.1| uncharacterized protein LOC100381578 [Zea mays]
 gi|223944573|gb|ACN26370.1| unknown [Zea mays]
 gi|414585240|tpg|DAA35811.1| TPA: hypothetical protein ZEAMMB73_503732 [Zea mays]
          Length = 640

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/180 (34%), Positives = 96/180 (53%), Gaps = 12/180 (6%)

Query: 67  EPTDPRNLQEIFHKMRTEGL-----TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPD 121
           E T P+ +  +F +M   G+      +  V +  ALSKDG   EAL +F ++  +G   +
Sbjct: 289 EATFPQCIA-LFQEMEERGMGKEIPQHAYVLVIGALSKDGKPFEALAVFERMSKRGCPAN 347

Query: 122 VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDA 181
              +TA+I++    G+ KEA+ +F RM A+G+  +A TY V++  L     GN   L +A
Sbjct: 348 AAMYTALIDSMGKFGREKEAMALFERMKATGIELDAVTYGVVVNCLCRF--GN---LEEA 402

Query: 182 QKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
                  V KG+  NA  YT++ + F +   VD+A+ L ++M AKGFVPD       LID
Sbjct: 403 LACFRSCVEKGVAVNAIFYTSLIDGFGKTGMVDQAKELFEEMVAKGFVPDSYCYN-VLID 461



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 75/165 (45%), Gaps = 11/165 (6%)

Query: 73  NLQE---IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           NL+E    F     +G+  NA+    + D   K G+  +A +LF ++  KG +PD   + 
Sbjct: 398 NLEEALACFRSCVEKGVAVNAIFYTSLIDGFGKTGMVDQAKELFEEMVAKGFVPDSYCYN 457

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
            +I+A   AG+  +A   + RM   G     YTY +LI GL            +A K+  
Sbjct: 458 VLIDALVKAGRTDDACAFYKRMEDDGCDQTVYTYTILIDGLFKEHKNE-----EALKFWD 512

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            M+ KG+ P A  + A+      + K   A  +L ++   G +P+
Sbjct: 513 SMIDKGITPTAAAFRALSNGLCLSGKFSRAWRILDELAPMGVIPE 557



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 72/163 (44%), Gaps = 8/163 (4%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M+  G+  +AV    + + L + G   EAL  F    +KG   + + +T++I+ + 
Sbjct: 370 LFERMKATGIELDAVTYGVVVNCLCRFGNLEEALACFRSCVEKGVAVNAIFYTSLIDGFG 429

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G   +A  +F  M+A G  P++Y Y VLI  L  A   +     DA  +   M   G 
Sbjct: 430 KTGMVDQAKELFEEMVAKGFVPDSYCYNVLIDALVKAGRTD-----DACAFYKRMEDDGC 484

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK 236
                TYT + +   +  K +EA      M  KG  P   A +
Sbjct: 485 DQTVYTYTILIDGLFKEHKNEEALKFWDSMIDKGITPTAAAFR 527



 Score = 42.7 bits (99), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 66/145 (45%), Gaps = 14/145 (9%)

Query: 105 EALQLFAQIKDKGHMPDVVAH------TAVIEAYASAGQGKEALRVFMRMLASGVAPNAY 158
           +A QL A+++   H   V++H       ++I + A+ G  +E L  +  M  +GV P+  
Sbjct: 148 QARQLVAELR--AHGDAVLSHLTPASSASLIRSLAAFGLSEELLWAWQAMRLAGVEPSRL 205

Query: 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG-MRPNAGTYTAVFEAFVRAQKVDEAR 217
           TY  L+ GL      NA +L  A      M  +  +RP+  +Y  + + + RA +  +A 
Sbjct: 206 TYNCLLDGLV-----NADLLDTAINVFDAMSTEHRVRPDVVSYNILIKGYCRAGRTQDAM 260

Query: 218 GLLQQMKAKGFVPDEKAVKEALIDK 242
             L  M+    +  +K     L+ +
Sbjct: 261 ARLADMREHAELAPDKVTYLTLMQR 285


>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 528

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 83/160 (51%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +  F  M   GLT N      + DA  K G    AL LFA++K +G  P VV +  +++A
Sbjct: 155 RSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDA 214

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
             SAG+   A ++F +M   G +P++YTY+ L+ GL     G +  + +A K   EMV +
Sbjct: 215 LCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGL-----GKSGRVEEAHKVFREMVDR 269

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G+  +   Y ++     +A  +D    L+++M  KGF PD
Sbjct: 270 GVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPD 309



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 69/139 (49%), Gaps = 5/139 (3%)

Query: 92  KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
           K+ D L   G    A  ++ ++  KG   D  A+  +I  +  +GQ   A+ +F  M   
Sbjct: 70  KLIDILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIK 129

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           G  P+ YTY  L+  L     G A  + +A+ +   M+ +G+ PN  TY  + +AF +  
Sbjct: 130 GSEPDEYTYGFLVNAL-----GKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVG 184

Query: 212 KVDEARGLLQQMKAKGFVP 230
           ++D A GL  +MK +GF P
Sbjct: 185 QLDMALGLFAEMKRRGFQP 203



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 83/162 (51%), Gaps = 8/162 (4%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +++FHKM  +G + ++     + + L K G   EA ++F ++ D+G   D+V + +++  
Sbjct: 225 RKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLAT 284

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
            A AG      ++   M   G  P+A+++  ++  L  A   +A     A++    MV  
Sbjct: 285 LAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDA-----AREVFARMVES 339

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK 233
           G +P+  +Y  + +++ R     +AR +L++M   GF+P+ K
Sbjct: 340 GCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFIPETK 381



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 80/179 (44%), Gaps = 10/179 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            ++F +M   G+  + V    +   L+K G      +L  ++  KG  PD  +   +++A
Sbjct: 260 HKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDA 319

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              A +   A  VF RM+ SG  P+  +Y +LI   A   D        A++ L EMV  
Sbjct: 320 LGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDA-----AQARQMLEEMVEA 374

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEA--LIDKRGQGFR 248
           G  P   TY ++        +VDEA  +L++M+  G  PD         ++ KRG+  R
Sbjct: 375 GFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRLMDMLGKRGENQR 433



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 79/159 (49%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F +M+ +G   +      + +AL K G   EA   F  + ++G  P++  +  +++A+
Sbjct: 121 EMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAF 180

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              GQ   AL +F  M   G  P+  TY +L+  L +A       +G A+K   +M G G
Sbjct: 181 RKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGR-----VGAARKLFHKMTGDG 235

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             P++ TY+ +     ++ +V+EA  + ++M  +G   D
Sbjct: 236 CSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVD 274



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 70/139 (50%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DAL K      A ++FA++ + G  PD++++  +I++YA  G   +A ++   M+ +G
Sbjct: 316 IMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAG 375

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P   TY  LI  L  A DG    + +A   L EM   G RP+  TY  + +   +  +
Sbjct: 376 FIPETKTYNSLIHWL--ATDGQ---VDEAFAVLEEMETAGCRPDVVTYNRLMDMLGKRGE 430

Query: 213 VDEARGLLQQMKAKGFVPD 231
              A  L QQMK KG  PD
Sbjct: 431 NQRAARLFQQMKDKGVEPD 449



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 61/135 (45%), Gaps = 5/135 (3%)

Query: 97  LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
             + G    A+++F ++K KG  PD   +  ++ A   AG+ +EA   F  ML  G+ PN
Sbjct: 110 FGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPN 169

Query: 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
             TY +L+             L  A     EM  +G +P+  TY  + +A   A +V  A
Sbjct: 170 IPTYNLLMDAFRKVGQ-----LDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAA 224

Query: 217 RGLLQQMKAKGFVPD 231
           R L  +M   G  PD
Sbjct: 225 RKLFHKMTGDGCSPD 239



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 79/173 (45%), Gaps = 9/173 (5%)

Query: 71  PRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P   +E+F +M   G   + +    + D+ ++ G   +A Q+  ++ + G +P+   + +
Sbjct: 326 PDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFIPETKTYNS 385

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           +I   A+ GQ  EA  V   M  +G  P+  TY  L+  L    +        A +   +
Sbjct: 386 LIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRLMDMLGKRGENQR-----AARLFQQ 440

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
           M  KG+ P+  +Y    +      ++DEA  L + MKA G  P +KA+   LI
Sbjct: 441 MKDKGVEPDTLSYAVRIDGLAFDDRLDEALVLFKDMKAVG-CPVDKAMYRILI 492



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 3/99 (3%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +M T G   + V   ++ D L K G    A +LF Q+KDKG  PD +++   I+  A
Sbjct: 402 VLEEMETAGCRPDVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGLA 461

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172
              +  EAL +F  M A G   +   Y +LI+    A D
Sbjct: 462 FDDRLDEALVLFKDMKAVGCPVDKAMYRILIRAAHRAGD 500



 Score = 38.9 bits (89), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 5/105 (4%)

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           +I AY    +  +A  +F +  +   +P  + +  LI  L      N+     A+    +
Sbjct: 36  LITAYGRGNKSGDAFDLFNQAESFACSPTVHAFTKLIDILV-----NSGEFERAELVYKK 90

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           +V KG + +   Y  +   F R+ ++D A  + ++MK KG  PDE
Sbjct: 91  LVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDE 135


>gi|242074484|ref|XP_002447178.1| hypothetical protein SORBIDRAFT_06g029920 [Sorghum bicolor]
 gi|241938361|gb|EES11506.1| hypothetical protein SORBIDRAFT_06g029920 [Sorghum bicolor]
          Length = 643

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/184 (33%), Positives = 95/184 (51%), Gaps = 11/184 (5%)

Query: 77  IFHKMRTEGL-----TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +F +M   G+      +  V +  ALSKDG   EAL +F ++  +G   +   +TA+I++
Sbjct: 301 LFQEMEERGMGKEIPQHAYVLVIGALSKDGKPFEALAVFERMLKRGCPANAAMYTALIDS 360

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G+ KEA+ +F RM ASG+  +A TY V++  L     GN +   +A       V K
Sbjct: 361 MGKLGREKEAMALFERMKASGIELDAVTYGVIVNCLCRF--GNME---EALSCFRSCVEK 415

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVI 251
           G+  NA  YT++ + F +   VD+A+ L ++M AKGFVPD       LID   +  R  I
Sbjct: 416 GVAVNAIFYTSLIDGFGKTGMVDQAKELFEEMIAKGFVPDSYCYN-VLIDALVKAGRTDI 474

Query: 252 NILF 255
              F
Sbjct: 475 ACAF 478



 Score = 70.1 bits (170), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 74/165 (44%), Gaps = 11/165 (6%)

Query: 73  NLQEIFHKMRT---EGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           N++E     R+   +G+  NA+    + D   K G+  +A +LF ++  KG +PD   + 
Sbjct: 401 NMEEALSCFRSCVEKGVAVNAIFYTSLIDGFGKTGMVDQAKELFEEMIAKGFVPDSYCYN 460

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
            +I+A   AG+   A   + RM   G     YTY +LI GL            +A K+  
Sbjct: 461 VLIDALVKAGRTDIACAFYERMEDDGCDQTVYTYTILIDGLFKEHKNE-----EALKFWD 515

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            M+ KG+ P A  +  +      + K   A  +L ++   G +P+
Sbjct: 516 SMIDKGITPTAAAFRVLANGLCLSGKFSRAWRILDELAPMGVIPE 560



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 72/163 (44%), Gaps = 8/163 (4%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M+  G+  +AV    + + L + G   EAL  F    +KG   + + +T++I+ + 
Sbjct: 373 LFERMKASGIELDAVTYGVIVNCLCRFGNMEEALSCFRSCVEKGVAVNAIFYTSLIDGFG 432

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G   +A  +F  M+A G  P++Y Y VLI  L  A  G   I   A  +   M   G 
Sbjct: 433 KTGMVDQAKELFEEMIAKGFVPDSYCYNVLIDALVKA--GRTDI---ACAFYERMEDDGC 487

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK 236
                TYT + +   +  K +EA      M  KG  P   A +
Sbjct: 488 DQTVYTYTILIDGLFKEHKNEEALKFWDSMIDKGITPTAAAFR 530



 Score = 39.7 bits (91), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 74/191 (38%), Gaps = 35/191 (18%)

Query: 89  NAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRM 148
           ++  +  +L+  GL+ E L  +  ++  G  P  + +  +++   +AG    A+ VF  M
Sbjct: 174 SSASLIRSLAAFGLSEELLWAWQAMRLAGVEPSRLTYNCLLDGLVNAGLLDTAINVFDAM 233

Query: 149 LASG-VAPNAYTYAVLIKGLAAAA---DG---------NAKILGDAQKYL---------- 185
                V P+  +Y +LIKG   A    DG          A++  D   YL          
Sbjct: 234 STEDRVRPDVVSYNILIKGYCRAGRTQDGMSRLADLREQAELAPDKVTYLTLMQRHYSEG 293

Query: 186 -----------MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
                      ME  G G       Y  V  A  +  K  EA  + ++M  +G  P   A
Sbjct: 294 TFPQCIALFQEMEERGMGKEIPQHAYVLVIGALSKDGKPFEALAVFERMLKRG-CPANAA 352

Query: 235 VKEALIDKRGQ 245
           +  ALID  G+
Sbjct: 353 MYTALIDSMGK 363



 Score = 39.3 bits (90), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 65/144 (45%), Gaps = 12/144 (8%)

Query: 105 EALQLFAQIKDKG-----HMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYT 159
           +A QL A+++  G     H+    +  ++I + A+ G  +E L  +  M  +GV P+  T
Sbjct: 151 QARQLVAELRAHGDAVLRHL-SPASSASLIRSLAAFGLSEELLWAWQAMRLAGVEPSRLT 209

Query: 160 YAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG-MRPNAGTYTAVFEAFVRAQKVDEARG 218
           Y  L+ GL      NA +L  A      M  +  +RP+  +Y  + + + RA +  +   
Sbjct: 210 YNCLLDGLV-----NAGLLDTAINVFDAMSTEDRVRPDVVSYNILIKGYCRAGRTQDGMS 264

Query: 219 LLQQMKAKGFVPDEKAVKEALIDK 242
            L  ++ +  +  +K     L+ +
Sbjct: 265 RLADLREQAELAPDKVTYLTLMQR 288


>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 85/149 (57%), Gaps = 6/149 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D + KD   ++A  L++++  KG  P+VV ++A+I  + + GQ K+A+ +F +M+   
Sbjct: 203 IIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLKDAIDLFNKMILEN 262

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+ YT+ +L+ G     DG  K   + +     M+ +G++PN  TY ++ + +   ++
Sbjct: 263 IKPDVYTFNILVDGF--CKDGKMK---EGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKE 317

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALID 241
           V++A+ +L  M  +G  PD ++    LID
Sbjct: 318 VNKAKSILYTMSQRGVNPDIQSY-NILID 345



 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 85/173 (49%), Gaps = 11/173 (6%)

Query: 74  LQEIFHK-MRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
            +E+ HK +  + +T N+  + D L K G    AL+L  ++ D+G  PD++ ++++++A 
Sbjct: 360 FKEMHHKHIIPDVVTYNS--LIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDAL 417

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               Q  +A+ +  ++   G+ PN YTY +LI GL          L DA     +++ KG
Sbjct: 418 CKNHQVDKAIALLTKLKDQGIRPNMYTYTILIDGLCKGGR-----LEDAHNIFEDLLVKG 472

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE---KAVKEALIDK 242
                 TYT +   F      DEA  LL +MK    +PD    + +  +L DK
Sbjct: 473 YNITVNTYTVMIHGFCNKGLFDEALALLSKMKDNSCIPDAVTYEIIIRSLFDK 525



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 50/206 (24%), Positives = 90/206 (43%), Gaps = 34/206 (16%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F+KM  E +  +      + D   KDG   E   +FA +  +G  P+VV + ++++ Y
Sbjct: 253 DLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGY 312

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA------------------------ 168
               +  +A  +   M   GV P+  +Y +LI G                          
Sbjct: 313 CLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDV 372

Query: 169 ----AAADGNAKI--LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
               +  DG  K+  +  A K + EM  +G+ P+  TY+++ +A  +  +VD+A  LL +
Sbjct: 373 VTYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTK 432

Query: 223 MKAKGFVPDEKAVKEALIDKRGQGFR 248
           +K +G  P+       LID   +G R
Sbjct: 433 LKDQGIRPNMYTY-TILIDGLCKGGR 457



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 64/139 (46%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L K G T  AL L  ++      P+VV ++ +I+         +A  ++  M++ G
Sbjct: 168 LIHGLCKVGETRAALDLLRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKG 227

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           ++PN  TY+ LI G           L DA     +M+ + ++P+  T+  + + F +  K
Sbjct: 228 ISPNVVTYSALISGFFTVGQ-----LKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGK 282

Query: 213 VDEARGLLQQMKAKGFVPD 231
           + E + +   M  +G  P+
Sbjct: 283 MKEGKTVFAMMMKQGIKPN 301


>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 762

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 84/167 (50%), Gaps = 11/167 (6%)

Query: 72  RNLQ---EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAH 125
           RNL    E F +MR  GL  N      + D  S+ GL +EA ++  ++ + G  P VV +
Sbjct: 368 RNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTY 427

Query: 126 TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185
            A I  +    + +EAL V   M+  G+AP+  +Y+ +I G     +     L  A +  
Sbjct: 428 NAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGE-----LDRAFQMK 482

Query: 186 MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
            EMV KG+ P+A TY+++ +     +++ EA  L Q+M   G  PDE
Sbjct: 483 QEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDE 529



 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 79/157 (50%), Gaps = 8/157 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +   M ++G+  N +    + + L ++G   EA ++  ++  KG  PD V +  ++  Y 
Sbjct: 271 LLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYC 330

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G   +AL +   M+ +GV+P+  TY  LI  +  A +     L  A ++  +M  +G+
Sbjct: 331 KEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARN-----LNRAMEFFDQMRIRGL 385

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           RPN  TYT + + F R   ++EA  +L +M   GF P
Sbjct: 386 RPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSP 422



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 81/179 (45%), Gaps = 11/179 (6%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
            F +M   G   N V    + DA  K G   EA  L   +  KG  P+++++  +I    
Sbjct: 236 CFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLC 295

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G  KEA  +   M   G  P+  TY  L+ G     + +  ++  A     EMV  G+
Sbjct: 296 REGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHA-----EMVRNGV 350

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVIN 252
            P+  TYTA+  +  +A+ ++ A     QM+ +G  P+E+     LID  G   +G++N
Sbjct: 351 SPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYT-TLID--GFSRQGLLN 406



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 9/115 (7%)

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKI-- 177
           P+V  +  +I  + S G+ ++ L  F  M  +G  PN  TY  LI       D   K+  
Sbjct: 212 PNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLI-------DAYCKMGR 264

Query: 178 LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           + +A   L  M  KGM+PN  +Y  +     R   + EA  +L++M  KGF PDE
Sbjct: 265 IDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDE 319



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 82/184 (44%), Gaps = 10/184 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +M  +GL  + V    +     + G    A Q+  ++ +KG  PD V ++++I+   
Sbjct: 446 VVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLC 505

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKI-LGDAQKYLMEMVGKG 192
              +  EA  +   ML  G+ P+ +TY  LI       D N  + L D      EM+ KG
Sbjct: 506 EMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHD------EMIHKG 559

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVIN 252
             P+A TY+ +     +  +  EA+ LL ++  +  VP +      + +     F+ V+ 
Sbjct: 560 FLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVA 619

Query: 253 ILFG 256
           ++ G
Sbjct: 620 LIKG 623



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 70/150 (46%), Gaps = 6/150 (4%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA  L  ++ D G  PD   +T +I AY   G   +AL +   M+  G  P+A TY+VLI
Sbjct: 512 EACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLI 571

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            GL   A        +A++ L +++ +   P+  TY  + E     +       L++   
Sbjct: 572 NGLNKQARTR-----EAKRLLFKLIYEESVPSDVTYDTLIENCSNIE-FKSVVALIKGFC 625

Query: 225 AKGFVPDEKAVKEALIDKRGQGFRGVINIL 254
            KG + +   V E+++++  +    V N++
Sbjct: 626 MKGLMHEADRVFESMVERNHKPGEAVYNVI 655



 Score = 46.2 bits (108), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 30/131 (22%), Positives = 57/131 (43%), Gaps = 13/131 (9%)

Query: 60  FKKVVDEE-PTDPRNLQEIFHKMRTEGLTN----NAVKMFDALSKDGLTHEALQLFAQIK 114
           FK + +E  P+D      + +    E  +N    + V +       GL HEA ++F  + 
Sbjct: 588 FKLIYEESVPSD------VTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMV 641

Query: 115 DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL--AAAAD 172
           ++ H P    +  +I  +   G   +A  ++  M+ SG  P+  T   LIK L      +
Sbjct: 642 ERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKALFKEGMNE 701

Query: 173 GNAKILGDAQK 183
             ++++GD  +
Sbjct: 702 EMSEVIGDTLR 712


>gi|357145546|ref|XP_003573680.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 739

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 88/169 (52%), Gaps = 9/169 (5%)

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F +M   G + N     ++     K      A+ LF+++ D G +P+VV +TA+I+  
Sbjct: 233 DVFERMDVNGCSPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAGLVPNVVTYTALIQGQ 292

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
            S GQ   A R+   M  SG+ PN +T +VLI  L        + +G+AQ  L  ++ KG
Sbjct: 293 CSDGQLDCAYRLLQSMENSGLVPNEWTCSVLIDALC-----KHERVGEAQLLLGSLIQKG 347

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           ++ N   YT++ +   +A +   A  L+Q + ++GFVPD      +LID
Sbjct: 348 IKVNEIVYTSLIDGLCKAGRFAAADRLMQTLVSQGFVPDAHTYS-SLID 395



 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 80/173 (46%), Gaps = 9/173 (5%)

Query: 72  RNLQEIFHKMRTEGLTNN---AVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R    +F  M+ +G   +      M   L   G T EA  L +    +G  P+VV + A+
Sbjct: 159 REAMSVFAGMQADGCAPDPHVYATMVHGLCGAGRTREAETLLSDAMAEGFEPNVVVYNAL 218

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I+ Y + G  + A+ VF RM  +G +PN  TY  LI G        ++ L  A      M
Sbjct: 219 IDGYCNVGDLELAVDVFERMDVNGCSPNVRTYTELISGFC-----KSRKLDRAMMLFSRM 273

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           V  G+ PN  TYTA+ +      ++D A  LLQ M+  G VP+E      LID
Sbjct: 274 VDAGLVPNVVTYTALIQGQCSDGQLDCAYRLLQSMENSGLVPNEWTCS-VLID 325



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 77/158 (48%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNN---AVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +   M   GL  N      + DAL K     EA  L   +  KG   + + +T++I+   
Sbjct: 304 LLQSMENSGLVPNEWTCSVLIDALCKHERVGEAQLLLGSLIQKGIKVNEIVYTSLIDGLC 363

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG+   A R+   +++ G  P+A+TY+ LI GL        K L +A   L +M+ KG+
Sbjct: 364 KAGRFAAADRLMQTLVSQGFVPDAHTYSSLIDGLC-----RQKELSEAMLVLDDMMEKGV 418

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +P+  TYT + +  VR    D ++ +L +M A G  PD
Sbjct: 419 QPSPVTYTIIIDELVREVGADGSKKILDKMIAAGIKPD 456



 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 81/173 (46%), Gaps = 9/173 (5%)

Query: 72  RNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R  + +      EG   N V    + D     G    A+ +F ++   G  P+V  +T +
Sbjct: 194 REAETLLSDAMAEGFEPNVVVYNALIDGYCNVGDLELAVDVFERMDVNGCSPNVRTYTEL 253

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I  +  + +   A+ +F RM+ +G+ PN  TY  LI+G    +DG    L  A + L  M
Sbjct: 254 ISGFCKSRKLDRAMMLFSRMVDAGLVPNVVTYTALIQG--QCSDGQ---LDCAYRLLQSM 308

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
              G+ PN  T + + +A  + ++V EA+ LL  +  KG   +E  V  +LID
Sbjct: 309 ENSGLVPNEWTCSVLIDALCKHERVGEAQLLLGSLIQKGIKVNE-IVYTSLID 360



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 68/142 (47%), Gaps = 5/142 (3%)

Query: 98  SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA 157
            + GL   A +LF  +  +G +     +TA++     AG  +EA+ VF  M A G AP+ 
Sbjct: 118 CRAGLLAHACRLFVLMPLRGCVRTAFTYTALLHGLCGAGMVREAMSVFAGMQADGCAPDP 177

Query: 158 YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
           + YA ++ GL  A  G  +   +A+  L + + +G  PN   Y A+ + +     ++ A 
Sbjct: 178 HVYATMVHGLCGA--GRTR---EAETLLSDAMAEGFEPNVVVYNALIDGYCNVGDLELAV 232

Query: 218 GLLQQMKAKGFVPDEKAVKEAL 239
            + ++M   G  P+ +   E +
Sbjct: 233 DVFERMDVNGCSPNVRTYTELI 254



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 65/146 (44%), Gaps = 11/146 (7%)

Query: 98  SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA 157
             +G   +A  +   + D G  P++V + A+I  YA+ G   +A   F  M+A+G  PN 
Sbjct: 468 CHEGRMEDAEHMMLHMVDHGVCPNLVTYNALICGYANLGLTSQAFSTFKHMVANGCKPNE 527

Query: 158 YTYAVLIKGLAAAADGN------AKILGDAQ-KYLM----EMVGKGMRPNAGTYTAVFEA 206
            +Y VL++ L      N        I   A+ KYL     EMV   +      Y     +
Sbjct: 528 ESYTVLLRLLIKKESSNNIPANSVSIWKIAEMKYLHGLLEEMVKLQLPSEIDIYNCFLTS 587

Query: 207 FVRAQKVDEARGLLQQMKAKGFVPDE 232
             R  ++DEA+ LL +M++    P E
Sbjct: 588 LCRVDRLDEAKILLIEMQSANLTPSE 613



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 33/143 (23%), Positives = 68/143 (47%), Gaps = 5/143 (3%)

Query: 92  KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
            + D L +     EA+ +   + +KG  P  V +T +I+          + ++  +M+A+
Sbjct: 392 SLIDGLCRQKELSEAMLVLDDMMEKGVQPSPVTYTIIIDELVREVGADGSKKILDKMIAA 451

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           G+ P+ +TY + ++  +   +G  +   DA+  ++ MV  G+ PN  TY A+   +    
Sbjct: 452 GIKPDVFTYTIFVR--SYCHEGRME---DAEHMMLHMVDHGVCPNLVTYNALICGYANLG 506

Query: 212 KVDEARGLLQQMKAKGFVPDEKA 234
              +A    + M A G  P+E++
Sbjct: 507 LTSQAFSTFKHMVANGCKPNEES 529



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 54/125 (43%), Gaps = 6/125 (4%)

Query: 117 GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK 176
           G  PD  A+T+ +  Y  AG    A R+F+ M   G    A+TY  L+ GL  A      
Sbjct: 102 GFAPDSHAYTSFVVGYCRAGLLAHACRLFVLMPLRGCVRTAFTYTALLHGLCGAG----- 156

Query: 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK 236
           ++ +A      M   G  P+   Y  +      A +  EA  LL    A+GF P+   V 
Sbjct: 157 MVREAMSVFAGMQADGCAPDPHVYATMVHGLCGAGRTREAETLLSDAMAEGFEPN-VVVY 215

Query: 237 EALID 241
            ALID
Sbjct: 216 NALID 220



 Score = 53.5 bits (127), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 5/96 (5%)

Query: 117 GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK 176
           G  PDV  +T  + +Y   G+ ++A  + + M+  GV PN  TY  LI G A     N  
Sbjct: 452 GIKPDVFTYTIFVRSYCHEGRMEDAEHMMLHMVDHGVCPNLVTYNALICGYA-----NLG 506

Query: 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +   A      MV  G +PN  +YT +    ++ + 
Sbjct: 507 LTSQAFSTFKHMVANGCKPNEESYTVLLRLLIKKES 542



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 5/107 (4%)

Query: 125 HTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKY 184
           +T +I AY  AG    + R    +L +G AP+++ Y   + G        A +L  A + 
Sbjct: 75  YTTLINAYCLAGDLPASKRHLSSLLRAGFAPDSHAYTSFVVGYC-----RAGLLAHACRL 129

Query: 185 LMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            + M  +G    A TYTA+      A  V EA  +   M+A G  PD
Sbjct: 130 FVLMPLRGCVRTAFTYTALLHGLCGAGMVREAMSVFAGMQADGCAPD 176


>gi|302760727|ref|XP_002963786.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
 gi|300169054|gb|EFJ35657.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
          Length = 432

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 86/164 (52%), Gaps = 13/164 (7%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
           AL + G   EAL  F Q+ ++G++P +V+  A+I     A +  +AL VF  M+     P
Sbjct: 176 ALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHP 235

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           N  TY+V+I GL       +  L +AQ+ L  MV +G RP+   YT +   F  A ++D 
Sbjct: 236 NLVTYSVVIDGLC-----KSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDS 290

Query: 216 ARGLLQQMKAKGFVPD--------EKAVKEALIDKRGQGFRGVI 251
           A GLL++M ++G +PD        +K  K   +D   + FR ++
Sbjct: 291 ALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELV 334



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 78/154 (50%), Gaps = 8/154 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F++M       N V    + D L K     EA QL  ++  +G  PD+VA+T ++  +
Sbjct: 223 EVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGF 282

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           ++AG+   AL +  RM++ G  P+  TY V+I  L          + DA +   E+V   
Sbjct: 283 SAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGR-----VDDAHEIFRELVANK 337

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK 226
             PN  TY+A+   + RA +VDE   ++++M  +
Sbjct: 338 CSPNVVTYSALIGGYCRASRVDEGGKVMREMACR 371



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 13/162 (8%)

Query: 76  EIFHKM------RTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           ++F KM      R    T NA  + D L K      A  +  + + +   PDVV +  ++
Sbjct: 117 DLFRKMVAAGGCRPNAFTYNA--LVDGLCKQDRLDAARAVITEARKRDFAPDVVTYNTLM 174

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
            A    G+  EAL  F +M   G  P   ++  +I GL       A+ L DA +   EM+
Sbjct: 175 AALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLC-----RARRLADALEVFNEMI 229

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +   PN  TY+ V +   ++ ++DEA+ LL +M ++G  PD
Sbjct: 230 DRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPD 271



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 73/159 (45%), Gaps = 10/159 (6%)

Query: 77  IFHKMRTEGLTNN---AVKMFDALSKDGLTHEALQLFAQIKDKGH-MPDVVAHTAVIEAY 132
           +  +M  EG+  N      +   L + G   +AL+ F    +  H  PDVV++T +I   
Sbjct: 47  LLREMDVEGMQCNDRTTSIILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGL 106

Query: 133 ASAGQGKEALRVFMRMLAS-GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              G+   A  +F +M+A+ G  PNA+TY  L+ GL          L  A+  + E   +
Sbjct: 107 CKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLC-----KQDRLDAARAVITEARKR 161

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
              P+  TY  +  A  +  +VDEA     QM  +G+VP
Sbjct: 162 DFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVP 200


>gi|222629097|gb|EEE61229.1| hypothetical protein OsJ_15269 [Oryza sativa Japonica Group]
          Length = 855

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 60/179 (33%), Positives = 90/179 (50%), Gaps = 15/179 (8%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M+  G+T +      + D+  K GL  +A  LF +++  G  P VV +TA+I AY 
Sbjct: 310 LFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYL 369

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN------AKILG-----DAQ 182
            A Q  +A  +F RM+ +G  PN  TY  L+ GL  A + +      AK++G     D+ 
Sbjct: 370 KAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSD 429

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
            Y        + PN  TY A+ +   +A KVD A  LL  M + G  P+   V +ALID
Sbjct: 430 FYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNH-IVYDALID 487



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/160 (30%), Positives = 73/160 (45%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            E+   M + G   N +    + D   K G    A ++F Q+   G++P V  +T++I+ 
Sbjct: 464 HELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDR 523

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G+   A++V  +ML     PN  TY  +I GL    +        A K L  M  K
Sbjct: 524 MFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESE-----KALKLLSLMEEK 578

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G  PN  TYTA+ +   +A K+D +  L  QM  KG  P+
Sbjct: 579 GCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPN 618



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 55/204 (26%), Positives = 88/204 (43%), Gaps = 17/204 (8%)

Query: 49  TKSKLPPPYDPFK----KVVDEEPTDPRNLQEIFHKMRTEGLTNNAV-------KMFDAL 97
           T    PP Y  +      +  +E     +L ++  K+  E L  N V            L
Sbjct: 204 TTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCL 263

Query: 98  SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA 157
              G   +A QL  ++  KG +PD   ++ VI     A + ++A  +F  M   GV P+ 
Sbjct: 264 CGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDV 323

Query: 158 YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
           YTY +LI     A      ++  AQ    EM   G  P   TYTA+  A+++A++V +A 
Sbjct: 324 YTYTILIDSFCKAG-----LIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQAN 378

Query: 218 GLLQQMKAKGFVPDEKAVKEALID 241
            +  +M   G  P++     AL+D
Sbjct: 379 DIFHRMVDAGCRPND-VTYGALVD 401



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 54/189 (28%), Positives = 91/189 (48%), Gaps = 16/189 (8%)

Query: 49  TKSKLPPPYDPFKKVVDEEPTDPRN--LQEIFHKMRTEGLTNNAVK---MFDALSKDGLT 103
           TK    P    +  ++D    D R     ++  +M  +  T N V    M D L + G +
Sbjct: 506 TKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGES 565

Query: 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
            +AL+L + +++KG  P+VV +TA+I+    AG+   +L +F +M   G +PN  TY VL
Sbjct: 566 EKALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVL 625

Query: 164 IKGLAAAA--DGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221
           I  L AA   D    +LG+ ++       +G R     ++  F A         + G+L+
Sbjct: 626 INHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIA---------SLGILE 676

Query: 222 QMKAKGFVP 230
           +M++ G VP
Sbjct: 677 EMESYGTVP 685



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 46/154 (29%), Positives = 72/154 (46%), Gaps = 6/154 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K      A +L   +   G  P+ + + A+I+ +  AG+   A  VF++M   G
Sbjct: 450 LVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCG 509

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+ +TY  LI  +    DG   +   A K L +M+     PN  TYTA+ +   R  +
Sbjct: 510 YLPSVHTYTSLIDRM--FKDGRLDL---AMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGE 564

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
            ++A  LL  M+ KG  P+      ALID  G+ 
Sbjct: 565 SEKALKLLSLMEEKGCSPN-VVTYTALIDGLGKA 597



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 45/175 (25%), Positives = 78/175 (44%), Gaps = 24/175 (13%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQI---------------KDKG 117
           +IFH+M   G   N V    + D L K G   +A +++A++               +D+ 
Sbjct: 379 DIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRH 438

Query: 118 HM-PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK 176
            + P+VV + A+++    A +   A  +   ML+SG  PN   Y  LI G   A      
Sbjct: 439 TLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGK---- 494

Query: 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +  AQ+  ++M   G  P+  TYT++ +   +  ++D A  +L QM      P+
Sbjct: 495 -IDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPN 548



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 76/187 (40%), Gaps = 39/187 (20%)

Query: 81  MRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG- 136
           M  +G + N V    + D L K G    +L LF Q+  KG  P+ V +  +I    +AG 
Sbjct: 575 MEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGL 634

Query: 137 --------------------QGKE------------ALRVFMRMLASGVAPNAYTYAVLI 164
                               QG              +L +   M + G  P A  Y +LI
Sbjct: 635 LDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLI 694

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
              + A  G  +I  +  K +ME V   ++ +   Y ++ +A   A +V+EA  L  +M 
Sbjct: 695 DCFSKA--GRLEIAMELHKEMME-VPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMT 751

Query: 225 AKGFVPD 231
            +GFVP+
Sbjct: 752 RRGFVPE 758



 Score = 43.5 bits (101), Expect = 0.086,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 56/135 (41%), Gaps = 8/135 (5%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
           AL K+G   +AL +   I+ +    D V  T +I     A    EA+    RM  +   P
Sbjct: 84  ALCKEGRWADALDM---IEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIP 140

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           N  TY  L+ G         K LG  ++ +  M+ +G  PN   + ++  ++   +    
Sbjct: 141 NVVTYRTLLSGFL-----KKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAY 195

Query: 216 ARGLLQQMKAKGFVP 230
           A  LL +M   G  P
Sbjct: 196 AYKLLNRMTTCGCPP 210


>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
 gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
          Length = 1636

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 54/162 (33%), Positives = 85/162 (52%), Gaps = 13/162 (8%)

Query: 76   EIFHKMRTEGLTNNAV----KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            E+F +M   G     V     + D+L K G   +A +L   +  KG  P+VV +++++  
Sbjct: 933  ELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHG 992

Query: 132  YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKI--LGDAQKYLMEMV 189
               AG+  EA  +  RM  SG +PN  TY  +I       DG+ K+  + +A   L EMV
Sbjct: 993  LCKAGKLDEATALLQRMTRSGCSPNIVTYNTII-------DGHCKLGRIDEAYHLLEEMV 1045

Query: 190  GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              G +PN  TYT + +AF +  K ++A GL++ M  KG+VP+
Sbjct: 1046 DGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPN 1087



 Score = 80.5 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 78/158 (49%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +MR  G+  + V    +  +  KD     A ++  ++K+   +PDVV ++A+I    
Sbjct: 532 LFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLC 591

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG   +A  VF  ML  G APN  TY  LI GL          +  A + L  M  +  
Sbjct: 592 KAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINK-----VEQAAEMLEIMRKQSC 646

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            P++ TYT +      A +++EA  +L++MK KG +PD
Sbjct: 647 TPDSITYTCLINGLCNASRLEEAWRVLREMKDKGCLPD 684



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/126 (35%), Positives = 60/126 (47%), Gaps = 5/126 (3%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           AL L  Q+  +G  PDVV++T VI       Q  EA RV  +M+  G  PN  TY  L+ 
Sbjct: 284 ALWLLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVD 343

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G     D     L  A + + +M  +G RPNA TY  +   F R   ++ A  +LQ M  
Sbjct: 344 GFCRVGD-----LDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQ 398

Query: 226 KGFVPD 231
            G  PD
Sbjct: 399 TGCPPD 404



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 44/146 (30%), Positives = 71/146 (48%), Gaps = 7/146 (4%)

Query: 86  LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVF 145
           +T N+V   D L K    ++A  LF +++  G MPDVV ++ VI ++        A ++ 
Sbjct: 511 VTYNSV--VDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKML 568

Query: 146 MRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFE 205
            RM  +   P+  TY+ LI GL  A       +  A     EM+G G  PN  TY  + +
Sbjct: 569 ERMKEAKCVPDVVTYSALINGLCKAG-----TVDKAFDVFQEMLGCGCAPNLVTYNTLID 623

Query: 206 AFVRAQKVDEARGLLQQMKAKGFVPD 231
              +  KV++A  +L+ M+ +   PD
Sbjct: 624 GLCKINKVEQAAEMLEIMRKQSCTPD 649



 Score = 73.6 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 8/158 (5%)

Query: 77   IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
            +  +M   G + N V    + D   K G   EA  L  ++ D G  P+VV +T +++A+ 
Sbjct: 1005 LLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFC 1064

Query: 134  SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
              G+ ++A+ +   M+  G  PN +TY  L+       +     +  A + L  M+ KG 
Sbjct: 1065 KCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDE-----VERACQLLSSMIQKGC 1119

Query: 194  RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             PN  +Y  V     +A KV E   LL+QM +   VPD
Sbjct: 1120 VPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPD 1157



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 43/160 (26%), Positives = 81/160 (50%), Gaps = 9/160 (5%)

Query: 76   EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQI-KDKGHMPDVVAHTAVIEA 131
            E+F+ ++  G T N V    +   L K     +A  L  ++ + +G  PD++ +  VI+ 
Sbjct: 1179 ELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDG 1238

Query: 132  YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               + +   A ++F++ML+ G+AP+  TY+++I  L        + + +A   L  M+  
Sbjct: 1239 LCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLC-----KWRFMDEANNVLELMLKN 1293

Query: 192  GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            G  P A TY  + + F +   +D+A  +LQ + +KG  PD
Sbjct: 1294 GFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPD 1333



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 72/139 (51%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M + LSK     +A++L  ++ D G  P+V ++  V+  +  A + + AL +  +M+  G
Sbjct: 236 MINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVTRG 295

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  +Y  +I GL          + +A + + +M+ +G +PN  TY  + + F R   
Sbjct: 296 CPPDVVSYTTVINGLCKLDQ-----VDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGD 350

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +D A  L+++M  +G+ P+
Sbjct: 351 LDGAVELVRKMTERGYRPN 369



 Score = 70.1 bits (170), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 6/126 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A +LF ++  KG       H +++     AGQ  +A+  F R ++    P++ TY  +I 
Sbjct: 180 AYELFDEMNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHF-REMSKTCPPDSVTYNTMIN 238

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           GL+      +  L DA + L EMV  G  PN  +Y  V   F +A +V+ A  LL+QM  
Sbjct: 239 GLS-----KSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVT 293

Query: 226 KGFVPD 231
           +G  PD
Sbjct: 294 RGCPPD 299



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 70/161 (43%), Gaps = 9/161 (5%)

Query: 76   EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
            ++   M  +G   N V    +   L K    HE + L  Q+     +PD+V    +I+A 
Sbjct: 1109 QLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAM 1168

Query: 133  ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK- 191
                +   A  +F  +  SG  PN  TY  L+ GL       ++    A+  L EM  K 
Sbjct: 1169 CKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLC-----KSRRFDQAEYLLREMTRKQ 1223

Query: 192  GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
            G  P+  TY  V +   ++++VD A  L  QM + G  PD+
Sbjct: 1224 GCSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDD 1264



 Score = 63.2 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 8/165 (4%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D     ++   M   G   +A+    +     K G   EA  L  Q+  +G  PDV   +
Sbjct: 385 DMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLS 444

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
            +I+A   A     A  +    +    AP+   Y++LI  L       AK L +A+ +L 
Sbjct: 445 TLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHALC-----KAKRLPEAESWLD 499

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            MV     P+  TY +V +   +++++++A  L  +M+A G +PD
Sbjct: 500 VMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPD 544



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/159 (25%), Positives = 77/159 (48%), Gaps = 9/159 (5%)

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F +M  +GL  +A     +   L   G   +A+  F ++  K   PD V +  +I   
Sbjct: 182 ELFDEMNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMS-KTCPPDSVTYNTMINGL 240

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           + + +  +A+R+   M+ +G APN ++Y  ++ G        A  + +A   L +MV +G
Sbjct: 241 SKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFC-----KANRVENALWLLEQMVTRG 295

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             P+  +YT V     +  +VDEA  ++ +M  +G  P+
Sbjct: 296 CPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPN 334



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 35/112 (31%), Positives = 56/112 (50%), Gaps = 5/112 (4%)

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
           PDVV + +V++    + +  +A  +F RM A+GV P+  TY+++I       D N   L 
Sbjct: 508 PDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSF--CKDNN---LD 562

Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            A K L  M      P+  TY+A+     +A  VD+A  + Q+M   G  P+
Sbjct: 563 SAFKMLERMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPN 614



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 40/174 (22%), Positives = 76/174 (43%), Gaps = 11/174 (6%)

Query: 76   EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
            ++F +M ++GL  + V    +  +L K     EA  +   +   G  P  + +  +I+ +
Sbjct: 1250 KLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGF 1309

Query: 133  ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               G   +AL +   +L+ G  P+  T+++ I  L+         L  A + L  M+  G
Sbjct: 1310 CKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGR-----LRQAGELLETMLRAG 1364

Query: 193  MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEA---LIDKR 243
            + P+  TY  + + F  A   ++A  L + M+  G  PD          L+DK+
Sbjct: 1365 LVPDTVTYNTLLKGFCDASLTEDAVDLFEVMRQCGCEPDNATYTTLVGHLVDKK 1418



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 7/126 (5%)

Query: 116 KGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNA 175
           +G+  D      +++A     + K+AL+V+   L    +PN +T+ +LI GL  A D   
Sbjct: 838 EGYNHDTYTCNCLLQALLRLKRPKDALQVYRNKLC--CSPNMFTFTILIHGLCRAGD--- 892

Query: 176 KILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAV 235
             +G A + L EM   G+  N   +  V +    A+K+D A  L ++M+  G  P +   
Sbjct: 893 --IGTAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLDSALELFKEMEESGSCPPDVFT 950

Query: 236 KEALID 241
              ++D
Sbjct: 951 YSTIVD 956



 Score = 44.3 bits (103), Expect = 0.056,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 3/95 (3%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F +M   G   N V    + D L K     +A ++   ++ +   PD + +T +I   
Sbjct: 601 DVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLINGL 660

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
            +A + +EA RV   M   G  P+  TY  L++ L
Sbjct: 661 CNASRLEEAWRVLREMKDKGCLPDRMTYGTLLRAL 695


>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
          Length = 851

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 53/167 (31%), Positives = 84/167 (50%), Gaps = 11/167 (6%)

Query: 72  RNLQ---EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAH 125
           RNL    E F +MR  GL  N      + D  S+ GL +EA ++  ++ + G  P VV +
Sbjct: 164 RNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTY 223

Query: 126 TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185
            A I  +    + +EAL V   M+  G+AP+  +Y+ +I G     +     L  A +  
Sbjct: 224 NAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGE-----LDRAFQMK 278

Query: 186 MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
            EMV KG+ P+A TY+++ +     +++ EA  L Q+M   G  PDE
Sbjct: 279 QEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDE 325



 Score = 83.2 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 44/157 (28%), Positives = 79/157 (50%), Gaps = 8/157 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +   M ++G+  N +    + + L ++G   EA ++  ++  KG  PD V +  ++  Y 
Sbjct: 67  LLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYC 126

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G   +AL +   M+ +GV+P+  TY  LI  +  A +     L  A ++  +M  +G+
Sbjct: 127 KEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARN-----LNRAMEFFDQMRIRGL 181

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           RPN  TYT + + F R   ++EA  +L +M   GF P
Sbjct: 182 RPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSP 218



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 50/178 (28%), Positives = 81/178 (45%), Gaps = 11/178 (6%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F +M   G   N V    + DA  K G   EA  L   +  KG  P+++++  +I     
Sbjct: 33  FGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCR 92

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            G  KEA  +   M   G  P+  TY  L+ G     + +  ++  A     EMV  G+ 
Sbjct: 93  EGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHA-----EMVRNGVS 147

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVIN 252
           P+  TYTA+  +  +A+ ++ A     QM+ +G  P+E+     LID  G   +G++N
Sbjct: 148 PSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYT-TLID--GFSRQGLLN 202



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 9/115 (7%)

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKI-- 177
           P+V  +  +I  + S G+ ++ L  F  M  +G  PN  TY  LI       D   K+  
Sbjct: 8   PNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLI-------DAYCKMGR 60

Query: 178 LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           + +A   L  M  KGM+PN  +Y  +     R   + EA  +L++M  KGF PDE
Sbjct: 61  IDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDE 115



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 44/184 (23%), Positives = 82/184 (44%), Gaps = 10/184 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +M  +GL  + V    +     + G    A Q+  ++ +KG  PD V ++++I+   
Sbjct: 242 VVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLC 301

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKI-LGDAQKYLMEMVGKG 192
              +  EA  +   ML  G+ P+ +TY  LI       D N  + L D      EM+ KG
Sbjct: 302 EMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHD------EMIHKG 355

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVIN 252
             P+A TY+ +     +  +  EA+ LL ++  +  VP +      + +     F+ V+ 
Sbjct: 356 FLPDAVTYSVLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVA 415

Query: 253 ILFG 256
           ++ G
Sbjct: 416 LIKG 419



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 11/87 (12%)

Query: 148 MLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL---MEMVGKGMRPNAGTYTAVF 204
           M+ S V+PN YTY +LI+G  +        +G+ QK L    EM   G  PN  TY  + 
Sbjct: 1   MIRSRVSPNVYTYNILIRGFCS--------VGELQKGLGCFGEMERNGCLPNVVTYNTLI 52

Query: 205 EAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +A+ +  ++DEA GLL+ M +KG  P+
Sbjct: 53  DAYCKMGRIDEAFGLLKSMSSKGMQPN 79



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 44/179 (24%), Positives = 82/179 (45%), Gaps = 9/179 (5%)

Query: 79  HKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASA 135
            +M  +G++ +AV    +   L +     EA  L  ++ D G  PD   +T +I AY   
Sbjct: 279 QEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVE 338

Query: 136 GQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP 195
           G   +AL +   M+  G  P+A TY+VLI GL   A        +A++ L +++ +   P
Sbjct: 339 GDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTR-----EAKRLLFKLIYEESVP 393

Query: 196 NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINIL 254
           +  TY  + E     +       L++    KG + +   V E+++++  +    V N++
Sbjct: 394 SDVTYDTLIENCSNIE-FKSVVALIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVI 451



 Score = 45.4 bits (106), Expect = 0.022,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 36/79 (45%)

Query: 89  NAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRM 148
           + V +       GL HEA ++F  + ++ H P    +  +I  +   G   +A  ++  M
Sbjct: 412 SVVALIKGFCMKGLMHEADRVFESMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEM 471

Query: 149 LASGVAPNAYTYAVLIKGL 167
           + SG  P+  T   LIK L
Sbjct: 472 IHSGFVPHTVTVITLIKAL 490


>gi|297825903|ref|XP_002880834.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297326673|gb|EFH57093.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 797

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 50/141 (35%), Positives = 77/141 (54%), Gaps = 7/141 (4%)

Query: 94  FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGV 153
           FDALSK G   EA++L  ++KDKG +PDV+ +T +I+ Y   G+  +AL +   M+ +G 
Sbjct: 394 FDALSKLGRVEEAIELLQEMKDKGIVPDVINYTTLIDGYCLKGKVVDALDLIDEMIGNGT 453

Query: 154 APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV 213
           +P+  TY VL+ GLA      A +     +    M  +G++PNA T   + E    A+KV
Sbjct: 454 SPDLITYNVLVSGLARNGHEEAVL-----EIYERMKAEGLKPNAVTDNVIIEGLCFARKV 508

Query: 214 DEARGLLQQMKAKGFVPDEKA 234
            EA      ++ K   P+ KA
Sbjct: 509 KEAEDFFMSLEQK--CPENKA 527



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 48/189 (25%), Positives = 81/189 (42%), Gaps = 27/189 (14%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           Q++F  M   GL  +      M     +     +A  LF  +K +G  PDVV +T +++ 
Sbjct: 610 QQLFDTMVERGLIPDLFTYTIMIHTYCRLNELQKAESLFEDMKQRGIKPDVVTYTVLLDR 669

Query: 132 Y-----------ASAGQ-GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKI-- 177
           Y           +  G+ GK    +     ASG+  +  +Y VLI       D   K+  
Sbjct: 670 YLKLDPEHHETGSVQGEVGKRNSELLREFSASGIGLDVVSYTVLI-------DRQCKMDK 722

Query: 178 LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK---A 234
           L  A +    M+  G+ P+   YTA+  ++ R   +D+A  L+ ++  K  +P E    A
Sbjct: 723 LEQAAELFDRMIDSGLEPDIVAYTALISSYFRKGYIDKAVTLVTELSKKYNIPTEHFEAA 782

Query: 235 VKEALIDKR 243
           VK A +  +
Sbjct: 783 VKRAALKAK 791



 Score = 53.9 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 66/147 (44%), Gaps = 7/147 (4%)

Query: 92  KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
           KM  AL +     +A QLF  + ++G +PD+  +T +I  Y    + ++A  +F  M   
Sbjct: 595 KMIGALCRLNNAIDAQQLFDTMVERGLIPDLFTYTIMIHTYCRLNELQKAESLFEDMKQR 654

Query: 152 GVAPNAYTYAVLIK---GLAAAADGNAKILGDAQK----YLMEMVGKGMRPNAGTYTAVF 204
           G+ P+  TY VL+     L         + G+  K     L E    G+  +  +YT + 
Sbjct: 655 GIKPDVVTYTVLLDRYLKLDPEHHETGSVQGEVGKRNSELLREFSASGIGLDVVSYTVLI 714

Query: 205 EAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +   +  K+++A  L  +M   G  PD
Sbjct: 715 DRQCKMDKLEQAAELFDRMIDSGLEPD 741



 Score = 45.8 bits (107), Expect = 0.016,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 5/126 (3%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A  +  +++  G  PDV A +A+I+ Y       EAL    +ML  G+  N    + +++
Sbjct: 301 AESVILEMEKIGFGPDVSACSAIIDRYCKNMNLPEALGFLDKMLGKGLKINCVIVSSILQ 360

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
                      +  +A +   E     +  +   Y   F+A  +  +V+EA  LLQ+MK 
Sbjct: 361 CYC-----KMDMCLEALEKFKEFRDMNIFLDRVCYNVAFDALSKLGRVEEAIELLQEMKD 415

Query: 226 KGFVPD 231
           KG VPD
Sbjct: 416 KGIVPD 421



 Score = 42.7 bits (99), Expect = 0.14,   Method: Composition-based stats.
 Identities = 42/172 (24%), Positives = 73/172 (42%), Gaps = 34/172 (19%)

Query: 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
           G+  EA+ +  Q K    +PD+ A   ++      G+    + +F ++   G+  N YTY
Sbjct: 159 GMFDEAIDVLFQSKRLDCVPDIKACNFLMNRLIEFGKIGMVVALFKQLKQLGLCANEYTY 218

Query: 161 AVLIKGLAAAAD--GNAKIL-------------------GDAQK--YLME-------MVG 190
           A+++K L    D  G A +L                   G+ +K   L+E       +VG
Sbjct: 219 AIVVKALCRKGDLEGAAMLLLESPSVFSYKTFIDGLCVNGETEKAVVLIEEMIDTNVLVG 278

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDK 242
             +R     +  V   F    K++ A  ++ +M+  GF PD  A   A+ID+
Sbjct: 279 DDLRT---VFCMVVRGFCNEMKMEAAESVILEMEKIGFGPDVSAC-SAIIDR 326



 Score = 39.3 bits (90), Expect = 1.5,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 53/127 (41%), Gaps = 5/127 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EAL    ++  KG   + V  +++++ Y       EAL  F       +  +   Y V  
Sbjct: 335 EALGFLDKMLGKGLKINCVIVSSILQCYCKMDMCLEALEKFKEFRDMNIFLDRVCYNVAF 394

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
             L+         + +A + L EM  KG+ P+   YT + + +    KV +A  L+ +M 
Sbjct: 395 DALSKLGR-----VEEAIELLQEMKDKGIVPDVINYTTLIDGYCLKGKVVDALDLIDEMI 449

Query: 225 AKGFVPD 231
             G  PD
Sbjct: 450 GNGTSPD 456


>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Brachypodium distachyon]
          Length = 718

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 90/182 (49%), Gaps = 10/182 (5%)

Query: 55  PPYDPFKKVVDEEPTDPR--NLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQL 109
           P    F  VV+      R  + +++F +M  EGLT + V    +     K G  HEAL +
Sbjct: 223 PSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAV 282

Query: 110 FAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169
           FA++  KG +PDVV  T++I A   AG  + A+ +  +M   G+  N +T+  LI G   
Sbjct: 283 FAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFC- 341

Query: 170 AADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFV 229
                   L DA   + EM    ++P+   Y  +   + +  ++DEAR L+ +M+AKG  
Sbjct: 342 ----RNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMK 397

Query: 230 PD 231
           PD
Sbjct: 398 PD 399



 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 72/139 (51%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +   K G   EA +L  +++ KG  PDVV ++ ++  Y   G    A  +  +ML  G
Sbjct: 371 LINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKG 430

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V P+A TY+ LI+GL        + LGDA +   +M+  G++P+  TYT + +   +   
Sbjct: 431 VVPDAITYSSLIRGLC-----EERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGN 485

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V +A  L  +M  KG +PD
Sbjct: 486 VQKALSLHDEMIKKGVLPD 504



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 95/188 (50%), Gaps = 14/188 (7%)

Query: 75  QEIFHKMRTEGLTNNAVKMFDALS---KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+ H+M  +G+  + V     LS   K G T  A +L  ++  KG +PD + ++++I  
Sbjct: 385 RELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRG 444

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM---EM 188
                +  +A  +F +ML  G+ P+ +TY  LI       DG+ K  G+ QK L    EM
Sbjct: 445 LCEERRLGDACELFEKMLQLGLQPDEFTYTTLI-------DGHCKE-GNVQKALSLHDEM 496

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFR 248
           + KG+ P+  TY+ + +   ++ +  EA+ LL ++  +  VPD    +  +   R   F+
Sbjct: 497 IKKGVLPDVVTYSVLIDGLSKSARTKEAQRLLFKLYYEDPVPDNIKYEALMHCCRTAEFK 556

Query: 249 GVINILFG 256
            V+ +L G
Sbjct: 557 SVVALLKG 564



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 74/156 (47%), Gaps = 8/156 (5%)

Query: 80  KMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           +MR  GL  N      + D   ++G   +AL    ++++    P VV +  +I  Y   G
Sbjct: 320 QMRERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLG 379

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196
           +  EA  +   M A G+ P+  TY+ ++ G     D ++     A +   +M+ KG+ P+
Sbjct: 380 RMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDS-----AFELNRKMLKKGVVPD 434

Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           A TY+++       +++ +A  L ++M   G  PDE
Sbjct: 435 AITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDE 470



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 60/116 (51%), Gaps = 9/116 (7%)

Query: 117 GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA--DGN 174
           G+ P ++A+ AV+ A + A     A R+   ML  GVAPN YTY +L++ L A    +  
Sbjct: 115 GYAPSLLAYNAVLLALSDASL-PSARRLLASMLRDGVAPNVYTYNILVRALCARGQREEA 173

Query: 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
             ++GD      +M G G  PN  TY  +  AF RA +VD A  L+  M+  G  P
Sbjct: 174 LGVVGD------DMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRP 223



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 75/164 (45%), Gaps = 9/164 (5%)

Query: 81  MRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ 137
           MR  G   N V    +  A  + G    A +L   +++ G  P +V    V+     AG+
Sbjct: 181 MRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNGLCKAGR 240

Query: 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA 197
            ++A ++F  M   G+ P+  +Y  L+ G   A       L +A     EM  KG+ P+ 
Sbjct: 241 MEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAG-----CLHEALAVFAEMAQKGVVPDV 295

Query: 198 GTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
            T+T++  A  RA  ++ A  L+ QM+ +G   +E     ALID
Sbjct: 296 VTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFT-ALID 338



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 81/170 (47%), Gaps = 9/170 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+  KM  +G+  +A+    +   L ++    +A +LF ++   G  PD   +T +I+ +
Sbjct: 421 ELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGH 480

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G  ++AL +   M+  GV P+  TY+VLI GL+ +A        +AQ+ L ++  + 
Sbjct: 481 CKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKSARTK-----EAQRLLFKLYYED 535

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDK 242
             P+   Y A+     R  +      LL+    KG +     V ++++D+
Sbjct: 536 PVPDNIKYEALMHC-CRTAEFKSVVALLKGFSMKGLMNQADKVYQSMLDR 584



 Score = 38.9 bits (89), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 26/108 (24%), Positives = 52/108 (48%), Gaps = 4/108 (3%)

Query: 62  KVVDEEPTDPRNL--QEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHM 119
           K+  E+P  P N+  + + H  RT     + V +    S  GL ++A +++  + D+   
Sbjct: 530 KLYYEDPV-PDNIKYEALMHCCRTAEF-KSVVALLKGFSMKGLMNQADKVYQSMLDRHWK 587

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
            D   ++ +I  +   G   +AL    ++L  G +PN+ +   L++GL
Sbjct: 588 LDGSVYSVLIHGHCRGGNIMKALSFHKQLLRCGFSPNSTSTISLVRGL 635


>gi|357521289|ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula]
 gi|355524955|gb|AET05409.1| Tau class glutathione S-transferase [Medicago truncatula]
          Length = 1320

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 81/159 (50%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F +MR + +  + V    +   + K G   EA ++F ++  KG  PD V +TA+I+ Y
Sbjct: 368 KLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDGY 427

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             AG+ KEA  V  +M+  G+ PN  TY  L  GL    + +      A + L EM  KG
Sbjct: 428 CKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDV-----ANELLHEMSRKG 482

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           ++PN  TY  +     +   +++   L+++M   GF PD
Sbjct: 483 LQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPD 521



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/160 (30%), Positives = 80/160 (50%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +++   MR  G+  + V    +     K G    A +LF +++ K  +PD+V +T+VI  
Sbjct: 332 EQLLRGMRKWGVFPDNVVYTTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHG 391

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              +G+  EA  +F  ML  G+ P+  TY  LI G   A +     + +A     +MV K
Sbjct: 392 ICKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDGYCKAGE-----MKEAFSVHNQMVQK 446

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G+ PN  TYTA+ +   +  ++D A  LL +M  KG  P+
Sbjct: 447 GLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPN 486



 Score = 73.2 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 44/148 (29%), Positives = 74/148 (50%), Gaps = 8/148 (5%)

Query: 84  EGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALR 143
           E + NN + +   L K+G   EA QL   ++  G  PD V +T VI  +   G    A +
Sbjct: 312 EYIYNNIILL---LCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVISGFCKLGNVSAACK 368

Query: 144 VFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAV 203
           +F  M    + P+  TY  +I G+  +       + +A++   EM+ KG+ P+  TYTA+
Sbjct: 369 LFDEMRRKKIVPDIVTYTSVIHGICKSGK-----MVEAREMFNEMLVKGLEPDEVTYTAL 423

Query: 204 FEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            + + +A ++ EA  +  QM  KG  P+
Sbjct: 424 IDGYCKAGEMKEAFSVHNQMVQKGLTPN 451



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 38/159 (23%), Positives = 76/159 (47%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+ H+M  +GL  N      + + L K G   + ++L  ++   G  PD + +T +++AY
Sbjct: 473 ELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAY 532

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+  +A  +   ML   + P   T+ VL+ G   +      +L D ++ +  M+ KG
Sbjct: 533 CKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSG-----MLEDGERLIEWMLEKG 587

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + PNA T+ ++ + +     +     + + M  +G +PD
Sbjct: 588 IMPNATTFNSLMKQYCIKNNMRATTEIYKAMHDRGVMPD 626



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/149 (26%), Positives = 70/149 (46%), Gaps = 6/149 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +     G+  +  +L   + +KG MP+     ++++ Y      +    ++  M   G
Sbjct: 563 LMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQYCIKNNMRATTEIYKAMHDRG 622

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V P++ TY +LIKG   A +     + +A     EMV KG    A TY A+   F + +K
Sbjct: 623 VMPDSNTYNILIKGHCKARN-----MKEAWFLHKEMVEKGYSVTAATYDALIRGFYKRKK 677

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALID 241
             EAR L ++M+  G V  EK + +  +D
Sbjct: 678 FVEARKLFEEMRKHGLVA-EKDIYDIFVD 705



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 44/141 (31%), Positives = 65/141 (46%), Gaps = 6/141 (4%)

Query: 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
           G   + L+L  ++K KG  PD   +  +I      G+  EA ++   M   GV P+   Y
Sbjct: 291 GELDKVLKLVDELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVY 350

Query: 161 AVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
             +I G     + +A     A K   EM  K + P+  TYT+V     ++ K+ EAR + 
Sbjct: 351 TTVISGFCKLGNVSA-----ACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMF 405

Query: 221 QQMKAKGFVPDEKAVKEALID 241
            +M  KG  PDE     ALID
Sbjct: 406 NEMLVKGLEPDE-VTYTALID 425



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 72/158 (45%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           + ++M  +GLT N V    + D L K+G    A +L  ++  KG  P+V  +  ++    
Sbjct: 439 VHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLC 498

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G  ++ +++   M  +G  P+  TY  L+       +     +  A + L  M+ K +
Sbjct: 499 KIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGE-----MAKAHELLRIMLNKRL 553

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +P   T+  +   F  +  +++   L++ M  KG +P+
Sbjct: 554 QPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPN 591



 Score = 53.9 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F +    G+  N V    +   L + G   EA  L  Q+ D+G+ PDVV++  V+  Y
Sbjct: 228 KVFEEFPELGVCWNTVSCNIVLHCLCQLGKVREAHNLLVQMTDRGNFPDVVSYGVVVSGY 287

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+  + L++   +   G+ P+ Y Y  +I  L      N +++ +A++ L  M   G
Sbjct: 288 CRIGELDKVLKLVDELKGKGLKPDEYIYNNIILLLCK----NGEVV-EAEQLLRGMRKWG 342

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + P+   YT V   F +   V  A  L  +M+ K  VPD
Sbjct: 343 VFPDNVVYTTVISGFCKLGNVSAACKLFDEMRRKKIVPD 381



 Score = 37.4 bits (85), Expect = 6.0,   Method: Composition-based stats.
 Identities = 34/140 (24%), Positives = 64/140 (45%), Gaps = 6/140 (4%)

Query: 94  FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQG-KEALRVFMRMLASG 152
           F  L ++G   EA +LF ++   G +  V +    +   +   +G K A++VF      G
Sbjct: 178 FQVLVENGFVLEAQKLFHKLLRYGVVVSVDSCNLFLSRLSCNFEGIKIAVKVFEEFPELG 237

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V  N  +  +++  L          + +A   L++M  +G  P+  +Y  V   + R  +
Sbjct: 238 VCWNTVSCNIVLHCLCQLGK-----VREAHNLLVQMTDRGNFPDVVSYGVVVSGYCRIGE 292

Query: 213 VDEARGLLQQMKAKGFVPDE 232
           +D+   L+ ++K KG  PDE
Sbjct: 293 LDKVLKLVDELKGKGLKPDE 312


>gi|413920478|gb|AFW60410.1| hypothetical protein ZEAMMB73_296337 [Zea mays]
          Length = 676

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 81/164 (49%), Gaps = 9/164 (5%)

Query: 72  RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           RN+ ++F +M   G   N V      D L + G   +A  +  ++  KG  P+V  HT++
Sbjct: 233 RNVTDLFRRMSEMGTPPNMVNYSAWIDGLCERGYVKQAFHVLEEMVGKGLKPNVYTHTSL 292

Query: 129 IEAYASAGQGKEALRVFMRML-ASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           I+     G  + A R+F++++ +S   PN +TY V+I G           L  A+  L  
Sbjct: 293 IDGLCKIGWMERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGK-----LARAEMLLGR 347

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           MV +G+ PN  TYT +     +    D A  L+ +MK +GF+P+
Sbjct: 348 MVEQGLAPNTNTYTTLIHGHCKGGSFDRAFELMNKMKLEGFLPN 391



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 64/135 (47%), Gaps = 5/135 (3%)

Query: 98  SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA 157
            K G    AL LF Q+ +K   PD+  +T +I  Y    Q +++ ++F + L+ G+ P  
Sbjct: 438 CKQGHITCALDLFKQMAEKSCHPDIHTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTK 497

Query: 158 YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
            TY  +I G           L  A K    MV  G  P++ TY A+  +  +  +++EAR
Sbjct: 498 QTYTSMIAGYCRLGK-----LTSALKVFERMVQHGCLPDSITYGALISSLCKESRLEEAR 552

Query: 218 GLLQQMKAKGFVPDE 232
            L + M  K  VP +
Sbjct: 553 ALFETMLDKHLVPCD 567



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 55/139 (39%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M     K+G    A  L  ++ ++G  P+   +T +I  +   G    A  +  +M   G
Sbjct: 328 MIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIHGHCKGGSFDRAFELMNKMKLEG 387

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN YTY  +I G           + +A K L     +G+  +  TYT +     +   
Sbjct: 388 FLPNIYTYNAIIGGFCKKGK-----IQEAYKVLRMATSQGLHLDKVTYTILITEHCKQGH 442

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +  A  L +QM  K   PD
Sbjct: 443 ITCALDLFKQMAEKSCHPD 461



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 72/160 (45%), Gaps = 10/160 (6%)

Query: 76  EIFHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           E+ +KM+ EG   N +  ++A+     K G   EA ++      +G   D V +T +I  
Sbjct: 378 ELMNKMKLEGFLPN-IYTYNAIIGGFCKKGKIQEAYKVLRMATSQGLHLDKVTYTILITE 436

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +   G    AL +F +M      P+ +TY  +I     A     + +  +Q+   + +  
Sbjct: 437 HCKQGHITCALDLFKQMAEKSCHPDIHTYTTII-----AMYCQQRQMEQSQQLFDKCLSI 491

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G+ P   TYT++   + R  K+  A  + ++M   G +PD
Sbjct: 492 GLVPTKQTYTSMIAGYCRLGKLTSALKVFERMVQHGCLPD 531



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 73/157 (46%), Gaps = 8/157 (5%)

Query: 80  KMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           +M  +GL   TN    +     K G    A +L  ++K +G +P++  + A+I  +   G
Sbjct: 347 RMVEQGLAPNTNTYTTLIHGHCKGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKG 406

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196
           + +EA +V     + G+  +  TY +LI        G+     D  K   +M  K   P+
Sbjct: 407 KIQEAYKVLRMATSQGLHLDKVTYTILIT--EHCKQGHITCALDLFK---QMAEKSCHPD 461

Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK 233
             TYT +   + + +++++++ L  +  + G VP ++
Sbjct: 462 IHTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQ 498


>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 652

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 82/162 (50%), Gaps = 8/162 (4%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
            +F +M  + +  + V    + D LSK G    ALQL  Q+ D+G  P +  + ++++A 
Sbjct: 386 NLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDAL 445

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               Q  +A+ +  ++   G+ PN YTY++LIKGL  +       L DA+K    ++ KG
Sbjct: 446 CKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGK-----LEDARKVFEGLLVKG 500

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
              N  TYT + + F      +EA  LL +M+  G +PD K 
Sbjct: 501 HNLNVDTYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKT 542



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 77/139 (55%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D++ K  L +EA  LF+++  KG  PDVV ++A+I  +   G+  +A+ +F +M+   
Sbjct: 231 IIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILEN 290

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+ YT+ +L+   A   DG  K   + +     M+ +G++PN  TY ++ + +   ++
Sbjct: 291 IKPDVYTFNILVN--AFCKDGKMK---EGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKE 345

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V++A+ +   M   G  PD
Sbjct: 346 VNKAKSIFNTMAQGGVNPD 364



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 73/143 (51%), Gaps = 5/143 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DAL K     +A+ L  ++KDKG  P++  ++ +I+    +G+ ++A +VF  +L  G
Sbjct: 441 ILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKG 500

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
              N  TY ++I+G          +  +A   L +M   G  P+A TY  +  +  +  +
Sbjct: 501 HNLNVDTYTIMIQGFCVEG-----LFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDE 555

Query: 213 VDEARGLLQQMKAKGFVPDEKAV 235
            D A  LL++M A+G  P + A+
Sbjct: 556 NDMAEKLLREMIARGVRPRQIAI 578



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 72/156 (46%), Gaps = 8/156 (5%)

Query: 79  HKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASA 135
            KM   G+  N V    + +   + GL   A  +FA+I   G++PD +  T +I+     
Sbjct: 109 QKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLIKGLCLK 168

Query: 136 GQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP 195
           GQ ++A     +++A G   +  +Y  LI GL    +  A     A   L  + G  ++P
Sbjct: 169 GQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRA-----ALDLLQRVDGNLVQP 223

Query: 196 NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           N   Y  + ++  + + V+EA  L  +M +KG  PD
Sbjct: 224 NVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPD 259



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 64/139 (46%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L K G T  AL L  ++      P+VV +  +I++        EA  +F  M++ G
Sbjct: 196 LIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKG 255

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           ++P+  TY+ LI G           L DA     +M+ + ++P+  T+  +  AF +  K
Sbjct: 256 ISPDVVTYSALISGFCILGK-----LNDAIDLFNKMILENIKPDVYTFNILVNAFCKDGK 310

Query: 213 VDEARGLLQQMKAKGFVPD 231
           + E + +   M  +G  P+
Sbjct: 311 MKEGKTVFDMMMKQGIKPN 329



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 77/160 (48%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +F  M  +G+  N V    + D        ++A  +F  +   G  PD+ +++ +I  
Sbjct: 315 KTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMING 374

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +    +  EA+ +F  M    + P+  TY+ LI GL+ +       +  A + + +M  +
Sbjct: 375 FCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGR-----ISYALQLVDQMHDR 429

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G+ P   TY ++ +A  +  +VD+A  LL ++K KG  P+
Sbjct: 430 GVPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKGIQPN 469



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 8/119 (6%)

Query: 80  KMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           K++ +G+  N      +   L + G   +A ++F  +  KGH  +V  +T +I+ +   G
Sbjct: 460 KLKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKGHNLNVDTYTIMIQGFCVEG 519

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP 195
              EAL +  +M  +G  P+A TY ++I  L    + +      A+K L EM+ +G+RP
Sbjct: 520 LFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDENDM-----AEKLLREMIARGVRP 573


>gi|326522214|dbj|BAK04235.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 966

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 90/179 (50%), Gaps = 15/179 (8%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M+  G+  +      + D+  K GL  +A   F +++  G  P+VV +TA++ AY 
Sbjct: 474 LFQEMKKVGVNPDVYTYTILIDSFCKAGLIEQAQSWFDEMRSAGCSPNVVTYTALLHAYL 533

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA------AAADGNAKILGDAQKYLME 187
            + Q  +A  +F RM+     PNA TY+ LI GL        A +  AK++G +     +
Sbjct: 534 KSKQLYQANDIFHRMVGDACYPNAITYSALIDGLCKAGEIQKACEVYAKLIGTSDNIESD 593

Query: 188 MVGKG-----MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
              +G     + PN  TY A+     +AQKV +A  LL  M A G  P++  V +AL+D
Sbjct: 594 FYFEGKDTDTISPNVVTYGALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQ-IVYDALVD 651



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 88/200 (44%), Gaps = 17/200 (8%)

Query: 53  LPPPYDPFKKVVD-----EEPTDPRNL---QEIFHKMRTEGLTNNAVKMFD---ALSKDG 101
            PP Y  +   +      EE  +P  L   ++++ +M       N +   +    L   G
Sbjct: 372 CPPGYVVYNIFIGSICGREELPNPELLDLAEKVYEEMLVASCVLNKINTANFARCLCGVG 431

Query: 102 LTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYA 161
              +A Q+  ++  KG +PD   +T VI     A +  +A  +F  M   GV P+ YTY 
Sbjct: 432 KFEKAFQIVKEMMRKGFVPDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTYT 491

Query: 162 VLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221
           +LI     A      ++  AQ +  EM   G  PN  TYTA+  A+++++++ +A  +  
Sbjct: 492 ILIDSFCKAG-----LIEQAQSWFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIFH 546

Query: 222 QMKAKGFVPDEKAVKEALID 241
           +M      P+      ALID
Sbjct: 547 RMVGDACYPN-AITYSALID 565



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 65/139 (46%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   K G    A ++F ++   G++P V  +T++I+     G+   A++V  +ML   
Sbjct: 649 LVDGFCKVGEIDSAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDS 708

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN  TY  ++ GL    +        A   L  M  KG  PN  TYTA+ +   +A K
Sbjct: 709 CNPNVVTYTAMVDGLCKTGETE-----KALNLLSLMEKKGCSPNVVTYTALIDGLGKAGK 763

Query: 213 VDEARGLLQQMKAKGFVPD 231
           VD    L  QMK KG  P+
Sbjct: 764 VDAGLELFMQMKTKGCAPN 782



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 63/127 (49%), Gaps = 5/127 (3%)

Query: 49  TKSKLPPPYDPFKKVVDEEPTDPR-NL-QEIFHKMRTEGLTNNAVK---MFDALSKDGLT 103
           TK    P    +  ++D    D R +L  ++  +M  +    N V    M D L K G T
Sbjct: 670 TKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGLCKTGET 729

Query: 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
            +AL L + ++ KG  P+VV +TA+I+    AG+    L +FM+M   G APN  TY +L
Sbjct: 730 EKALNLLSLMEKKGCSPNVVTYTALIDGLGKAGKVDAGLELFMQMKTKGCAPNYVTYRIL 789

Query: 164 IKGLAAA 170
           I    AA
Sbjct: 790 INHCCAA 796



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 78/171 (45%), Gaps = 9/171 (5%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F    T+ ++ N V    + + L K     +A  L   +   G  P+ + + A+++ +  
Sbjct: 596 FEGKDTDTISPNVVTYGALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCK 655

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            G+   A  VF+RM   G  P+ +TY  LI  +    DG   +   A K L +M+     
Sbjct: 656 VGEIDSAQEVFLRMTKCGYLPSVHTYTSLIDRM--FKDGRLDL---AMKVLSQMLKDSCN 710

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
           PN  TYTA+ +   +  + ++A  LL  M+ KG  P+      ALID  G+
Sbjct: 711 PNVVTYTAMVDGLCKTGETEKALNLLSLMEKKGCSPN-VVTYTALIDGLGK 760



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 10/132 (7%)

Query: 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
           GL  EAL+   ++KD G+ P  V + A+++  ASAGQ + A RV   M ASG   +  T 
Sbjct: 183 GLWGEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMAFRVQKEMSASGFCMDRSTV 242

Query: 161 AVLIKGLAAAAD-GNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGL 219
               + L      G+A  L + + + ++ V           T +    + A   +EA   
Sbjct: 243 GSFAQALCKEGRWGDALDLLEREDFKLDTV---------LCTQMISGLMEASLFNEAMSF 293

Query: 220 LQQMKAKGFVPD 231
           L +M+   ++P+
Sbjct: 294 LHRMRCNSYIPN 305



 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 76/190 (40%), Gaps = 38/190 (20%)

Query: 81  MRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG- 136
           M  +G + N V    + D L K G     L+LF Q+K KG  P+ V +  +I    +AG 
Sbjct: 739 MEKKGCSPNVVTYTALIDGLGKAGKVDAGLELFMQMKTKGCAPNYVTYRILINHCCAAGL 798

Query: 137 --------------------QGKE------------ALRVFMRMLASGVAPNAYTYAVLI 164
                               QG              +L +   M +   AP A  Y +LI
Sbjct: 799 LDDAHLLLDEMKQTHWPKYLQGYRTTVQGFSKRFLASLGLLEEMESHDTAPIAPVYGMLI 858

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
              + A  G  +   +  K +ME+       +   +T++ +A   + +V+EA  L  +M+
Sbjct: 859 DSFSKA--GRLETALELHKEMMEVSSSLNMASKDMHTSLIQALCLSSQVEEAVALYSEMR 916

Query: 225 AKGFVPDEKA 234
            +G VPD  A
Sbjct: 917 RRGIVPDLSA 926



 Score = 45.1 bits (105), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 55/135 (40%), Gaps = 8/135 (5%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
           AL K+G   +AL L   ++ +    D V  T +I     A    EA+    RM  +   P
Sbjct: 248 ALCKEGRWGDALDL---LEREDFKLDTVLCTQMISGLMEASLFNEAMSFLHRMRCNSYIP 304

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           N  TY  L+ G         K LG  ++ +  M+ +G  P+   + ++   +  A+    
Sbjct: 305 NVVTYRTLLTGFL-----KKKQLGWCKRIINMMMTEGCNPSPSLFNSLVHTYCNAEDYAY 359

Query: 216 ARGLLQQMKAKGFVP 230
           A  L  +M   G  P
Sbjct: 360 AYKLFNRMNTCGCPP 374



 Score = 40.4 bits (93), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 3/78 (3%)

Query: 93  MFDALSKDGLTHEALQL---FAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRML 149
           + D+ SK G    AL+L     ++    +M     HT++I+A   + Q +EA+ ++  M 
Sbjct: 857 LIDSFSKAGRLETALELHKEMMEVSSSLNMASKDMHTSLIQALCLSSQVEEAVALYSEMR 916

Query: 150 ASGVAPNAYTYAVLIKGL 167
             G+ P+   +  L+KGL
Sbjct: 917 RRGIVPDLSAFVCLVKGL 934


>gi|302775294|ref|XP_002971064.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
 gi|300161046|gb|EFJ27662.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
          Length = 814

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 81/167 (48%), Gaps = 8/167 (4%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           + H +   G   +AV    +   L K G    A+++  +   +G   DVVA+TA+     
Sbjct: 565 LLHDLEKVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLC 624

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             GQ   A+ +F  M+  G AP+A  Y  +I GL        K L DA K+  EM+GKG 
Sbjct: 625 YQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLI-----KVKKLEDACKFFDEMIGKGQ 679

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
           +P   TYTA+ +A   A  VDEA    + M A+G +     + +ALI
Sbjct: 680 KPTVATYTALVQALCHAGNVDEAFHRFESMLARGELVGSVMIYDALI 726



 Score = 86.7 bits (213), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 78/160 (48%), Gaps = 9/160 (5%)

Query: 76  EIFHKMRTEGLT--NNAVK--MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           E+FH+M   G    + A+   M   L K     EA ++F Q++  G  PD +A+  +I+ 
Sbjct: 210 EVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDG 269

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
            A AG  +EAL+V   MLA    P   TY +L+  L  A       L  A++    M   
Sbjct: 270 LAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAG-----TLERAEELFRVMAAS 324

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G RPN+  YT++   F ++ ++ EA  L  +M   G+ PD
Sbjct: 325 GFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPD 364



 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 79/160 (49%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+F  M   G   N+V    +    +K G   EA  LF ++ + G+ PDV+ HT +I+ 
Sbjct: 315 EELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDG 374

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              +G  ++A + F  M+  G  PN  TY  +I+GL+         + +A + +  M+  
Sbjct: 375 LCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGR-----VANAFRIMKGMIAH 429

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G  P++ TY  + + F +  ++DEA  LL ++      P+
Sbjct: 430 GCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPN 469



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 73/139 (52%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + ++L K G    A +LF  +   G  P+ V +T++I  +A +G+ KEA  +F  M+ +G
Sbjct: 301 LVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAG 360

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  T+ V+I GL  +  GN +    A K   EM+  G +PN  TYT + +   +  +
Sbjct: 361 YRPDVITHTVMIDGLCKS--GNFE---QAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGR 415

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V  A  +++ M A G  PD
Sbjct: 416 VANAFRIMKGMIAHGCFPD 434



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 82/169 (48%), Gaps = 10/169 (5%)

Query: 77  IFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M  +G   +A     + + L K     +A + F ++  KG  P V  +TA+++A  
Sbjct: 635 LFQEMVRQGGAPDAAAYCCIINGLIKVKKLEDACKFFDEMIGKGQKPTVATYTALVQALC 694

Query: 134 SAGQGKEALRVFMRMLASG-VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
            AG   EA   F  MLA G +  +   Y  LI G   A   +A     A K   +M+ +G
Sbjct: 695 HAGNVDEAFHRFESMLARGELVGSVMIYDALIHGFCKALKVDA-----ALKLFEDMISRG 749

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
             P A T  ++F+  VR+ K ++A+ LLQ+M A G  P   A   A++D
Sbjct: 750 NVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGG-SPPHAATFTAILD 797



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 4/140 (2%)

Query: 93  MFDALSKDGLTHEALQ-LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
           + + L   G   + L  LF Q K      D     ++I      G+  EA R+F RM++ 
Sbjct: 476 LVNGLCDGGSVEKTLDDLFEQSKAAAETLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSE 535

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           G  P+A TY +LI GL  + +   +    A   L ++   G  P+A TYT +     +  
Sbjct: 536 GCKPDATTYNILINGLCRSRENRVE---RAFALLHDLEKVGYLPDAVTYTPLCIGLCKIG 592

Query: 212 KVDEARGLLQQMKAKGFVPD 231
           +VD A  +L++  ++G+  D
Sbjct: 593 EVDRAVKMLEEASSRGWNAD 612



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 77/190 (40%), Gaps = 36/190 (18%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F +M   G   N V    +   LSK G    A ++   +   G  PD V +  +++ +  
Sbjct: 388 FEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCK 447

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA-----------------AAAD----- 172
            G+  EA ++   +     +PN   Y+ L+ GL                  AAA+     
Sbjct: 448 LGRLDEAAQLLDELDKCSSSPNLQLYSSLVNGLCDGGSVEKTLDDLFEQSKAAAETLDPG 507

Query: 173 -------GNAKI--LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ--KVDEARGLLQ 221
                  G  K   L +A +    MV +G +P+A TY  +     R++  +V+ A  LL 
Sbjct: 508 LCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLH 567

Query: 222 QMKAKGFVPD 231
            ++  G++PD
Sbjct: 568 DLEKVGYLPD 577



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 9/130 (6%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHM-PDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
           +  AL   G   EA   F  +  +G +   V+ + A+I  +  A +   AL++F  M++ 
Sbjct: 689 LVQALCHAGNVDEAFHRFESMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISR 748

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           G  P A T A L  GL  +          AQ+ L EM   G  P+A T+TA+ +     +
Sbjct: 749 GNVPTAVTSASLFDGLVRSGKTE-----KAQELLQEMAAGGSPPHAATFTAILDGL---R 800

Query: 212 KVDEARGLLQ 221
           K DE+  LL+
Sbjct: 801 KSDESGKLLK 810



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 6/129 (4%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG-VAPNAYTYAVL 163
           +A+  F  +K K   PD+     +++    AG  ++A  VF  M+A G V P+   +  +
Sbjct: 172 DAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAM 231

Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           ++ L       AK + +A++   +M   G  P+A  Y  + +   +A    EA  +L  M
Sbjct: 232 VRTLL-----KAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNM 286

Query: 224 KAKGFVPDE 232
            AK  VP E
Sbjct: 287 LAKACVPTE 295



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/140 (22%), Positives = 64/140 (45%), Gaps = 6/140 (4%)

Query: 102 LTHEALQLFAQIKDK-GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
           +T  A+  F    ++ G   DV  +  ++    +     +   +   ML +G+APN +++
Sbjct: 98  VTGTAISFFRWAGEQAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSF 157

Query: 161 AVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
            +LI+  A     +     DA      M  K  +P+  T+  + +   +A   ++A  + 
Sbjct: 158 NILIRSFARTRRAD-----DAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVF 212

Query: 221 QQMKAKGFVPDEKAVKEALI 240
            +M A GFVP ++A+  A++
Sbjct: 213 HEMMAMGFVPPDRALHTAMV 232


>gi|357439843|ref|XP_003590199.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479247|gb|AES60450.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 834

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 51/162 (31%), Positives = 85/162 (52%), Gaps = 8/162 (4%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F  MR E +  + V    + D L K G  + AL+   ++ D+G  P+V+ +T++I+A 
Sbjct: 350 DLFEGMRNENVIPDVVAYSSLIDGLCKSGRINSALKYVDEMHDRGQPPNVITYTSLIDAL 409

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             + Q  +A+ +  ++   G+  N YTY +L+ GL    DG    L DAQK   +++ KG
Sbjct: 410 CKSHQVDKAIALLKKIKDQGIQANMYTYNILVDGL--CKDGR---LTDAQKVFQDLLMKG 464

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
              +  TY+ +     +    DEA  LL +M+ KG VPD  A
Sbjct: 465 HNVDVVTYSIMINGLCKESLFDEALTLLSKMEDKGCVPDAIA 506



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 63/261 (24%), Positives = 109/261 (41%), Gaps = 40/261 (15%)

Query: 6   ILRWLLHSPSPKRSLRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKKVVD 65
           ILR+  HS  P  +L +++T  +     SL + +D         + + PPP   F K++ 
Sbjct: 3   ILRFRFHSIIPNSTLLLSHTHFH-----SLPNLNDAIDSFNRMLRMRPPPPIIKFGKILG 57

Query: 66  EEPTDPRN--LQEIFHKMRTEGLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMP 120
                     +  +F +M   G+ +N + +    ++       + A  +FA+I   G+ P
Sbjct: 58  SLVKTKHYPIVIHLFQRMELHGIQSNYITLNILINSYCHLRQINSAFSVFAKILKLGYQP 117

Query: 121 DVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA--------- 171
           D++ +T +I      GQ KE+L    R+++ G+  +  +Y  LI GL             
Sbjct: 118 DIITYTTLIRGLCLNGQVKESLNFHDRLVSQGIKLDHVSYGTLINGLCKIGQTGPALRLL 177

Query: 172 -------------------DG--NAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
                              DG    K++ DA     EM  K + PN  TYT++   F   
Sbjct: 178 RKIEGEICRPDVVMYNTIIDGLCKDKLVRDAFDLYCEMFEKRVFPNVVTYTSLIYGFCIV 237

Query: 211 QKVDEARGLLQQMKAKGFVPD 231
            ++D+A GLL +M  K   P+
Sbjct: 238 GQLDKAFGLLNEMVLKNVNPN 258



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 47/165 (28%), Positives = 78/165 (47%), Gaps = 30/165 (18%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K+G   EA  L A +  +G  PDV  + A+++ Y    +  +A  VF  M   G
Sbjct: 265 LVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGYFLVKEAGKAKNVFNIMAQMG 324

Query: 153 VAPNAYTYAVLIKGL----------------------------AAAADGNAKI--LGDAQ 182
           V  + ++Y+V+I GL                            ++  DG  K   +  A 
Sbjct: 325 VTCDVHSYSVMISGLSKMKMLDEAMDLFEGMRNENVIPDVVAYSSLIDGLCKSGRINSAL 384

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
           KY+ EM  +G  PN  TYT++ +A  ++ +VD+A  LL+++K +G
Sbjct: 385 KYVDEMHDRGQPPNVITYTSLIDALCKSHQVDKAIALLKKIKDQG 429



 Score = 63.5 bits (153), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 45/158 (28%), Positives = 73/158 (46%), Gaps = 9/158 (5%)

Query: 78  FH-KMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           FH ++ ++G+  + V    + + L K G T  AL+L  +I+ +   PDVV +  +I+   
Sbjct: 141 FHDRLVSQGIKLDHVSYGTLINGLCKIGQTGPALRLLRKIEGEICRPDVVMYNTIIDGLC 200

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
                ++A  ++  M    V PN  TY  LI G           L  A   L EMV K +
Sbjct: 201 KDKLVRDAFDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQ-----LDKAFGLLNEMVLKNV 255

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            PN  T+  + +   +  K+ EA+ L+  M  +G  PD
Sbjct: 256 NPNVCTFNTLVDGLCKEGKMREAKSLVAVMMKEGVGPD 293



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 67/139 (48%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L KD L  +A  L+ ++ +K   P+VV +T++I  +   GQ  +A  +   M+   
Sbjct: 195 IIDGLCKDKLVRDAFDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKN 254

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V PN  T+  L+ GL          + +A+  +  M+ +G+ P+  TY A+ + +   ++
Sbjct: 255 VNPNVCTFNTLVDGLCKEGK-----MREAKSLVAVMMKEGVGPDVFTYNALMDGYFLVKE 309

Query: 213 VDEARGLLQQMKAKGFVPD 231
             +A+ +   M   G   D
Sbjct: 310 AGKAKNVFNIMAQMGVTCD 328



 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 8/116 (6%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  K++ +G+  N      + D L KDG   +A ++F  +  KGH  DVV ++ +I    
Sbjct: 421 LLKKIKDQGIQANMYTYNILVDGLCKDGRLTDAQKVFQDLLMKGHNVDVVTYSIMINGLC 480

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
                 EAL +  +M   G  P+A  Y  +I       D N K    A+K L EM+
Sbjct: 481 KESLFDEALTLLSKMEDKGCVPDAIAYETIINAF-FEKDMNDK----AEKLLREMI 531


>gi|302786208|ref|XP_002974875.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
 gi|300157770|gb|EFJ24395.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
          Length = 382

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 86/164 (52%), Gaps = 13/164 (7%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
           AL + G   EAL  F Q+ ++G++P +V+  A+I     A +  +AL VF  M+     P
Sbjct: 126 ALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHP 185

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           N  TY+V+I GL       +  L +AQ+ L  MV +G RP+   YT +   F  A ++D 
Sbjct: 186 NLVTYSVVIDGLC-----KSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDS 240

Query: 216 ARGLLQQMKAKGFVPD--------EKAVKEALIDKRGQGFRGVI 251
           A GLL++M ++G +PD        +K  K   +D   + FR ++
Sbjct: 241 ALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELV 284



 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 78/154 (50%), Gaps = 8/154 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F++M       N V    + D L K     EA QL  ++  +G  PD+VA+T ++  +
Sbjct: 173 EVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGF 232

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           ++AG+   AL +  RM++ G  P+  TY V+I  L          + DA +   E+V   
Sbjct: 233 SAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGR-----VDDAHEIFRELVANK 287

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK 226
             PN  TY+A+   + RA +VDE   ++++M  +
Sbjct: 288 CSPNVVTYSALIGGYCRASRVDEGGKVMREMACR 321



 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 77/162 (47%), Gaps = 13/162 (8%)

Query: 76  EIFHKM------RTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           ++F KM      R    T NA  + D L K      A  + A+ + +   PDVV +  ++
Sbjct: 67  DLFRKMVAAGGCRPNAFTYNA--LVDGLCKQDRLDAARAVIAEARKRDFAPDVVTYNTLM 124

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
            A    G+  EAL  F +M   G  P   ++  +I GL       A+ L DA +   EM+
Sbjct: 125 AALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLC-----RARRLADALEVFNEMI 179

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +   PN  TY+ V +   ++ ++DEA+ LL +M ++G  PD
Sbjct: 180 DRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPD 221



 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 73/157 (46%), Gaps = 14/157 (8%)

Query: 81  MRTEGLTNN---AVKMFDALSKDGLTHEALQLFAQIKDKGH-MPDVVAHTAVIEAYASAG 136
           M  EG+  N      +   L + G   +AL+ F    +  H  PDVV++T +I      G
Sbjct: 1   MDVEGMQCNDRTTSIILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLG 60

Query: 137 QGKEALRVFMRMLAS-GVAPNAYTYAVLIKGLAAA--ADGNAKILGDAQKYLMEMVGKGM 193
           +   A  +F +M+A+ G  PNA+TY  L+ GL      D    ++ +A+K       +  
Sbjct: 61  RVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVIAEARK-------RDF 113

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
            P+  TY  +  A  +  +VDEA     QM  +G+VP
Sbjct: 114 APDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVP 150


>gi|144923530|gb|ABE80159.2| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 695

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 75/139 (53%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L KDG   +AL L +QI ++G + D V + ++I+   S G+ +E  ++  +M+   
Sbjct: 201 LIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVREN 260

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V P+ YT+ +LI  L        +IL +AQ  L  M  +G +P+  TY A+ E +   + 
Sbjct: 261 VDPDDYTFNILIDALCKE----GRIL-EAQGVLAMMSKRGEKPDIVTYNALMEGYCSREN 315

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V EAR L  +M  +G  PD
Sbjct: 316 VHEARELFNRMVKRGLEPD 334



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DAL K+G   EA  + A +  +G  PD+V + A++E Y S     EA  +F RM+  G
Sbjct: 271 LIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRG 330

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+   Y VLI G         K++ +A     E+  K + P   +Y ++ +    + +
Sbjct: 331 LEPDVLNYNVLIDGYCK-----TKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGR 385

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +   + LL +M      PD
Sbjct: 386 ISHVKKLLDEMHGSAQPPD 404



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 6/149 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L   G      +L  ++      PDVV +  +I+A    G+  EAL V + M+  G
Sbjct: 376 LIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKG 435

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V PN  TY  ++ G     + N      A+     MV  G+ P+   Y  +   + + + 
Sbjct: 436 VKPNIVTYNAMMDGYCLRNNVNV-----AKDIFNRMVKSGLEPDILNYNVLINGYCKTEM 490

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALID 241
           VDEA  L ++M+ K  +PD  A   +LID
Sbjct: 491 VDEAIVLFKEMRHKNLIPD-IASYNSLID 518



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 80/160 (50%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+F++M   GL  + +    + D   K  +  EA+ LF ++ +K  +P + ++ ++I+ 
Sbjct: 320 RELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDG 379

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
             ++G+     ++   M  S   P+  TY +LI  L        +IL +A   L+ M+ K
Sbjct: 380 LCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKE----GRIL-EALGVLVMMMKK 434

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G++PN  TY A+ + +     V+ A+ +  +M   G  PD
Sbjct: 435 GVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPD 474



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 78/184 (42%), Gaps = 32/184 (17%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DAL K+G   EAL +   +  KG  P++V + A+++ Y        A  +F RM+ SG
Sbjct: 411 LIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSG 470

Query: 153 VAPNAYTYAVLIKGLAAA----------------------ADGNAKILG--------DAQ 182
           + P+   Y VLI G                          A  N+ I G          Q
Sbjct: 471 LEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQ 530

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDK 242
           + L EM   G  P+  TY  + +AF + Q  D+A  L +Q+  +G  PD      A++D 
Sbjct: 531 ELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQI-VEGIWPDFYT-NHAIVDN 588

Query: 243 RGQG 246
             +G
Sbjct: 589 LCKG 592



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 77/164 (46%), Gaps = 9/164 (5%)

Query: 73  NLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           ++QE+  +M   G + + +    + DA  K     +A+ LF QI + G  PD   + A++
Sbjct: 528 HVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVE-GIWPDFYTNHAIV 586

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
           +      + K A      +L  G +PN  TY +LI  L    DG+    G+A   L +M 
Sbjct: 587 DNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINAL--CKDGS---FGEAMLLLSKME 641

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK 233
                P+A T+  +    ++  + D+A  L ++M A+G V  EK
Sbjct: 642 DNDRPPDAITFEIIIGVLLQRNETDKAEKLREEMIARGLVNIEK 685



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 83/197 (42%), Gaps = 19/197 (9%)

Query: 54  PPPYDPFKKVVD------EEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTH 104
           PPP   F K++         PT       +F +++++G++ +      + +       T 
Sbjct: 52  PPPTSVFDKLLGAIVRMGHYPTAI----SLFTQLQSKGISPSIATFTILINCYFHQSHTA 107

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
            A  L A I   G+ P++V    +I  +   G   +AL     +LA G   + +TY  LI
Sbjct: 108 FAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLI 167

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            GL+      A     A   L EM    ++PN   Y+A+ +   +   V +A GL  Q+ 
Sbjct: 168 NGLSKNGQIKA-----ALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIG 222

Query: 225 AKGFVPDEKAVKEALID 241
            +G + D      +LID
Sbjct: 223 ERGILLD-AVTYNSLID 238



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/160 (20%), Positives = 73/160 (45%), Gaps = 9/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           ++IF++M   GL  + +    + +   K  +  EA+ LF +++ K  +PD+ ++ ++I+ 
Sbjct: 460 KDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDG 519

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
             + G+      +   M  SG +P+  TY +L+         +  I       L   + +
Sbjct: 520 LCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAI------SLFRQIVE 573

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G+ P+  T  A+ +   + +K+  A   L+ +   G  P+
Sbjct: 574 GIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPN 613



 Score = 53.5 bits (127), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 6/149 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +    +G+  +AL     +  +G++ D   +  +I   +  GQ K AL +   M  S 
Sbjct: 131 IINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSS 190

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V PN   Y+ LI GL    DG    + DA     ++  +G+  +A TY ++ +      +
Sbjct: 191 VQPNLVMYSALIDGLCK--DG---FVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGR 245

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALID 241
             E   LL +M  +   PD+      LID
Sbjct: 246 WQEVTQLLTKMVRENVDPDDYTFN-ILID 273


>gi|357150350|ref|XP_003575429.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g16890, mitochondrial-like [Brachypodium distachyon]
          Length = 684

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 85/174 (48%), Gaps = 11/174 (6%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           EI  +MR +G+  N V    +    SK G  H A  +   + + G +PD++  T++I   
Sbjct: 442 EIIKEMREKGVLPNLVTFNTLISGYSKLGNVHNAKAVLKMLMEHGLIPDIITFTSLINGL 501

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               Q  +A   F  M   GV PNA+TY VL+  L +A   N  I       L +M   G
Sbjct: 502 CHTHQLDDAFDCFNEMAEWGVRPNAHTYNVLMHALCSAGHVNKAI-----DLLNKMKKDG 556

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE---KAVKEALIDKR 243
           + P+A ++ A   +F R +KVD+AR +   M   G VPD     ++ +AL D+R
Sbjct: 557 ITPDAYSFNAPILSFCRMKKVDKARNIFNAMLRLGVVPDNYTYNSLIKALCDER 610



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 67/136 (49%), Gaps = 5/136 (3%)

Query: 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
           GL   A ++F Q+   G  P    + A+I A   AG    A   F +M A G  P+ +TY
Sbjct: 155 GLAQYAHEVFVQMPRLGLRPSTAVYNALIVASVRAGAVDTAYLRFQQMPADGCQPDCFTY 214

Query: 161 AVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
             L+ G+         I+ +A + + +M G G+RPN  TYT + + F  A + ++A  + 
Sbjct: 215 NTLVHGVCQRG-----IIDEALRLVRQMEGAGIRPNVFTYTMLVDGFCNAGRPEDAVHVF 269

Query: 221 QQMKAKGFVPDEKAVK 236
             MK KG  P+E + +
Sbjct: 270 DTMKEKGVSPNEASYR 285



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 78/159 (49%), Gaps = 12/159 (7%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F +M  +G   +      +   + + G+  EAL+L  Q++  G  P+V  +T +++ + +
Sbjct: 199 FQQMPADGCQPDCFTYNTLVHGVCQRGIIDEALRLVRQMEGAGIRPNVFTYTMLVDGFCN 258

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM--EMVGKG 192
           AG+ ++A+ VF  M   GV+PN  +Y  L+        G  + LG  + Y+M  E +G+ 
Sbjct: 259 AGRPEDAVHVFDTMKEKGVSPNEASYRTLVH-------GAFRCLGRHKAYVMLTEWLGRE 311

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             P+   +  +     + +   E   + ++M ++G++ D
Sbjct: 312 PPPHHSAWQCMLYCLSKNEMAKEVVEVTKKMNSRGYLLD 350



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 62/139 (44%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M   LSK+ +  E +++  ++  +G++ D      V+       +  +   +    +  G
Sbjct: 322 MLYCLSKNEMAKEVVEVTKKMNSRGYLLDNAIFGIVVSCAVKCLELSDLCGLLDDFVKKG 381

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P    Y ++IK L        K    A  YL  MV  G+     +Y  V + FV+A  
Sbjct: 382 GNPGFDVYIMVIKSLLGC-----KSSSKANHYLKRMVLDGLLSGVTSYNMVIDCFVKAGA 436

Query: 213 VDEARGLLQQMKAKGFVPD 231
           VD+A  ++++M+ KG +P+
Sbjct: 437 VDKAAEIIKEMREKGVLPN 455



 Score = 42.0 bits (97), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 69/167 (41%), Gaps = 16/167 (9%)

Query: 72  RNLQEIFHKMRTEG-LTNNAVKMFDALSKDGLTHEALQLFAQIKD----KGHMPDVVAHT 126
           + + E+  KM + G L +NA+  F  +    +    L     + D    KG  P    + 
Sbjct: 333 KEVVEVTKKMNSRGYLLDNAI--FGIVVSCAVKCLELSDLCGLLDDFVKKGGNPGFDVYI 390

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL--AAAADGNAKILGDAQKY 184
            VI++        +A     RM+  G+     +Y ++I     A A D  A+I+      
Sbjct: 391 MVIKSLLGCKSSSKANHYLKRMVLDGLLSGVTSYNMVIDCFVKAGAVDKAAEIIK----- 445

Query: 185 LMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             EM  KG+ PN  T+  +   + +   V  A+ +L+ +   G +PD
Sbjct: 446 --EMREKGVLPNLVTFNTLISGYSKLGNVHNAKAVLKMLMEHGLIPD 490


>gi|356529489|ref|XP_003533323.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 550

 Score = 88.2 bits (217), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 72/159 (45%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+ HKM  + +  N V    + D L KDGL  EA  L++ +  +G  PDV  +T +I  +
Sbjct: 204 ELLHKMEGQVVRPNVVIYNMIVDGLCKDGLVTEARDLYSDVVGRGIDPDVFTYTCLIHGF 263

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              GQ +E  R+   M+   V  N YTY +LI  L         +LG A      M+ +G
Sbjct: 264 CGLGQWREVTRLLCDMVDRNVNLNVYTYNILIDALCKKG-----MLGKAHDMRNLMIERG 318

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            RP+  T+  +   +     V EAR L       G  PD
Sbjct: 319 QRPDLVTFNTLMSGYCLYNDVVEARKLFDTFAECGITPD 357



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 83/183 (45%), Gaps = 28/183 (15%)

Query: 81  MRTEGLTNNAV---KMFDALSKDGLT-------------------HEALQLFAQIKDKGH 118
           M    L N+ V   K+FD  ++ G+T                    EAL LF ++  K  
Sbjct: 330 MSGYCLYNDVVEARKLFDTFAECGITPDVWSYNILIIGYCKNNRIDEALSLFNKMNYKKL 389

Query: 119 MPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKIL 178
            P++V ++++I+    +G+   A  +F  +   G +PN  TY +++  L        +++
Sbjct: 390 APNIVTYSSLIDGLCKSGRISYAWELFSAIHDGGPSPNVITYNIMLDALC-----KIQLV 444

Query: 179 GDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEA 238
             A +    M  +G+ PN  +Y  +   + +++++DEA  L ++M  +  VPD       
Sbjct: 445 DKAIELFNLMFERGLTPNVSSYNILINGYCKSKRIDEAMNLFEEMHRRNLVPDS-VTYNC 503

Query: 239 LID 241
           LID
Sbjct: 504 LID 506



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 8/155 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
            +F+KM  + L  N V    + D L K G    A +LF+ I D G  P+V+ +  +++A 
Sbjct: 379 SLFNKMNYKKLAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDGGPSPNVITYNIMLDAL 438

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
                  +A+ +F  M   G+ PN  +Y +LI G        +K + +A     EM  + 
Sbjct: 439 CKIQLVDKAIELFNLMFERGLTPNVSSYNILINGYC-----KSKRIDEAMNLFEEMHRRN 493

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
           + P++ TY  + +   ++ ++  A  L   M   G
Sbjct: 494 LVPDSVTYNCLIDGLCKSGRISHAWELFNVMHDGG 528



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 75/167 (44%), Gaps = 10/167 (5%)

Query: 52  KLPPPYDPFKKVVDEEPTDPR--NLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEA 106
           KL P    +  ++D      R     E+F  +   G + N +    M DAL K  L  +A
Sbjct: 388 KLAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDGGPSPNVITYNIMLDALCKIQLVDKA 447

Query: 107 LQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKG 166
           ++LF  + ++G  P+V ++  +I  Y  + +  EA+ +F  M    + P++ TY  LI G
Sbjct: 448 IELFNLMFERGLTPNVSSYNILINGYCKSKRIDEAMNLFEEMHRRNLVPDSVTYNCLIDG 507

Query: 167 LAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV 213
           L  +       +  A +    M   G   +  TY  +F+AF + Q V
Sbjct: 508 LCKSGR-----ISHAWELFNVMHDGGPPVDVITYNILFDAFSKIQHV 549



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 58/128 (45%), Gaps = 5/128 (3%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L  +G   +AL+    +  +G + D V +  +I      G  +EA  +  +M    V P
Sbjct: 157 GLCINGEVRKALEFHDSVVAQGFLLDEVTYGTLINGLCKIGLTREAFELLHKMEGQVVRP 216

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           N   Y +++ GL    DG   ++ +A+    ++VG+G+ P+  TYT +   F    +  E
Sbjct: 217 NVVIYNMIVDGL--CKDG---LVTEARDLYSDVVGRGIDPDVFTYTCLIHGFCGLGQWRE 271

Query: 216 ARGLLQQM 223
              LL  M
Sbjct: 272 VTRLLCDM 279



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 76/171 (44%), Gaps = 17/171 (9%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DAL K G+  +A  +   + ++G  PD+V    ++  Y       EA ++F      G
Sbjct: 294 LIDALCKKGMLGKAHDMRNLMIERGQRPDLVTFNTLMSGYCLYNDVVEARKLFDTFAECG 353

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+ ++Y +LI G       N +I  +A     +M  K + PN  TY+++ +   ++ +
Sbjct: 354 ITPDVWSYNILIIGYCK----NNRI-DEALSLFNKMNYKKLAPNIVTYSSLIDGLCKSGR 408

Query: 213 VDEARGLLQQMKAKGFVPD--------EKAVKEALIDKRGQGFRGVINILF 255
           +  A  L   +   G  P+        +   K  L+DK  + F    N++F
Sbjct: 409 ISYAWELFSAIHDGGPSPNVITYNIMLDALCKIQLVDKAIELF----NLMF 455


>gi|357449185|ref|XP_003594869.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483917|gb|AES65120.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 545

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 85/173 (49%), Gaps = 15/173 (8%)

Query: 62  KVVDEEPTDPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGH 118
           K+VDE         ++F +M  + +  N V    + D L K G T  AL+L  ++ D+G 
Sbjct: 352 KMVDEA-------MKLFEEMHCKQIFPNVVTYNSLVDGLCKSGRTSCALELVDEMHDRGQ 404

Query: 119 MPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKIL 178
             +++ + ++++A        +A+ +  ++   G+ P+ +TY VLI GL          L
Sbjct: 405 PSNIITYNSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLINGLCKVGR-----L 459

Query: 179 GDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            DAQK   +++ KG  PN  TYT++   F      DE   +L +MK  G +P+
Sbjct: 460 DDAQKVFEDLLVKGYSPNIYTYTSLINGFCNKGFFDEGLAMLSKMKDNGCIPN 512



 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 79/139 (56%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D++ KD L ++A  L+ ++  K   PDVV ++++I  +   G+ K A+ +F RM++  
Sbjct: 204 IIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFNRMISDN 263

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN YT+++LI G     +G  +   +A+  L  M+ K ++ +  TY ++ + +   ++
Sbjct: 264 INPNVYTFSILIDGF--CKEGKVR---EAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQ 318

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V++A+ L   M  +G  PD
Sbjct: 319 VNKAKSLFNVMAQRGVTPD 337



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 76/157 (48%), Gaps = 8/157 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+  +M   G  +N +    + DA+ K+    +A+ L  +IK+KG  PD+  +T +I   
Sbjct: 394 ELVDEMHDRGQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLINGL 453

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+  +A +VF  +L  G +PN YTY  LI G       N     +    L +M   G
Sbjct: 454 CKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGFC-----NKGFFDEGLAMLSKMKDNG 508

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFV 229
             PNA TY  +  +     + D+A  LL++M A+G +
Sbjct: 509 CIPNAITYEILIHSLFEKDENDKAEKLLREMIARGLL 545



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 75/155 (48%), Gaps = 8/155 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F++M ++ +  N      + D   K+G   EA  + A +  K    DVV + ++++ Y
Sbjct: 254 DLFNRMISDNINPNVYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGY 313

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               Q  +A  +F  M   GV P+ ++Y+++I G         K++ +A K   EM  K 
Sbjct: 314 CLVKQVNKAKSLFNVMAQRGVTPDVWSYSIMINGFC-----KIKMVDEAMKLFEEMHCKQ 368

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
           + PN  TY ++ +   ++ +   A  L+ +M  +G
Sbjct: 369 IFPNVVTYNSLVDGLCKSGRTSCALELVDEMHDRG 403



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 76/154 (49%), Gaps = 7/154 (4%)

Query: 78  FHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ 137
           F+ ++ + +T N   + +  S+ G    +  +FA+I  KG+ PD V  T +I+     G+
Sbjct: 86  FNGIKPDFITCNL--LMNCFSQLGHIKFSFSVFAKILKKGYHPDAVTFTILIKGLCLKGE 143

Query: 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA 197
             +AL    +++A G   +  +Y  LI GL    +  A     A + L  + GK +RPN 
Sbjct: 144 VHKALYFHDKVVAQGFQLDQVSYGTLINGLCRVGETKA-----AVQLLRRVDGKLVRPNV 198

Query: 198 GTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             Y+ + ++  + + V++A  L  +M +K   PD
Sbjct: 199 VMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPD 232


>gi|410109911|gb|AFV61035.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           alba]
          Length = 413

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 114/237 (48%), Gaps = 15/237 (6%)

Query: 2   AATAILRWLLHSPSPKRS-LRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPF 60
           +A+A+   +L +   +RS + + +  + A L+      + +  +  +  + KL  P+D  
Sbjct: 35  SASAVFAAILETKGTQRSDIYVFSGLITAYLESGFLRDAIECYR--LTREHKLWVPFDTC 92

Query: 61  KKVVDEEPTDPRNLQEI--FHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIK 114
           +KV+ E     R  + +  F++   E     ++  F+ L     KDG    A  +F  I 
Sbjct: 93  RKVL-EHLMKLRYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAIT 151

Query: 115 DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174
             G  P VV++  ++  Y   G   E  R+   MLASGV P+ YTY+VLI GL   +   
Sbjct: 152 KWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESK-- 209

Query: 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              + DA +   EM+ KG+ PN  T+T + +   +  +VD A  + +QM ++  +PD
Sbjct: 210 ---MDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPD 263



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 86/201 (42%), Gaps = 35/201 (17%)

Query: 63  VVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM 119
           +  E   D  N  E+F +M  +GL  N V    + D   K+G    A++++ Q+  +  +
Sbjct: 204 LCKESKMDDAN--ELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLL 261

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK--- 176
           PD++ +  +I      G   +A  +   M   G+ P+ +TY  LI G     D +A    
Sbjct: 262 PDLITYNTLIYGLCKKGDLNQAHGLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDAAFEH 321

Query: 177 -------------------ILG--------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
                              I G        DA+K L EM+  G++P+ GTYT +   F +
Sbjct: 322 RKRMIQENIRLDDVAYTAIISGLCQEGRPVDAEKMLREMLSVGLKPDTGTYTMIINEFCK 381

Query: 210 AQKVDEARGLLQQMKAKGFVP 230
              V +   LL++M+  G VP
Sbjct: 382 KGDVWKGSKLLKEMQRNGHVP 402


>gi|302757207|ref|XP_002962027.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
 gi|300170686|gb|EFJ37287.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
          Length = 814

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 81/167 (48%), Gaps = 8/167 (4%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           + H +   G   +AV    +   L K G    A+++  +   +G   DVVA+TA+     
Sbjct: 565 LLHDLEMVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLC 624

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             GQ   A+ +F  M+  G AP+A  Y  +I GL        K L DA K+  EM+GKG 
Sbjct: 625 YQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLI-----KGKKLEDACKFFDEMIGKGQ 679

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
           +P   TYTA+ +A   A  VDEA    + M A+G +     + +ALI
Sbjct: 680 KPTVATYTALVQALCHAGNVDEAFHRFEGMLARGELVGSVMIYDALI 726



 Score = 86.7 bits (213), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 63/218 (28%), Positives = 98/218 (44%), Gaps = 16/218 (7%)

Query: 24  NTRVNATLQRSLSSS---SDQPTKKYVNTKSKLPPPYDPFKKVVD---EEPTDPRNLQEI 77
           NT     L RS + +    D  T   +  + +  P    F  +VD   +   D +   E+
Sbjct: 153 NTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAF-EV 211

Query: 78  FHKMRTEGLT--NNAVK--MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           FH+M   G    + A+   M   L K     EA ++F Q++  G  PD +A+  +I+  A
Sbjct: 212 FHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLA 271

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG  +EAL+V   MLA    P   TY +L+  L  A       L  A++    M   G 
Sbjct: 272 KAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAG-----TLERAEELFRVMAASGF 326

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           RPN+  YT++   F ++ ++ EA  L  +M   G+ PD
Sbjct: 327 RPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPD 364



 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 79/160 (49%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+F  M   G   N+V    +    +K G   EA  LF ++ + G+ PDV+ HT +I+ 
Sbjct: 315 EELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDG 374

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              +G  ++A + F  M+  G  PN  TY  +I+GL+         + +A + +  M+  
Sbjct: 375 LCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGR-----VANAFRIMKGMIAH 429

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G  P++ TY  + + F +  ++DEA  LL ++      P+
Sbjct: 430 GCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPN 469



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 73/139 (52%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + ++L K G    A +LF  +   G  P+ V +T++I  +A +G+ KEA  +F  M+ +G
Sbjct: 301 LVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAG 360

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  T+ V+I GL  +  GN +    A K   EM+  G +PN  TYT + +   +  +
Sbjct: 361 YRPDVITHTVMIDGLCKS--GNFE---QAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGR 415

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V  A  +++ M A G  PD
Sbjct: 416 VANAFRIMKGMIAHGCFPD 434



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 82/169 (48%), Gaps = 10/169 (5%)

Query: 77  IFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M  +G   +A     + + L K     +A + F ++  KG  P V  +TA+++A  
Sbjct: 635 LFQEMVRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTALVQALC 694

Query: 134 SAGQGKEALRVFMRMLASG-VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
            AG   EA   F  MLA G +  +   Y  LI G   A   +A     A K   +M+ +G
Sbjct: 695 HAGNVDEAFHRFEGMLARGELVGSVMIYDALIHGFCKALKVDA-----ALKLFEDMISRG 749

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
             P A T  ++F+  VR+ K ++A+ LLQ+M A G  P   A   A++D
Sbjct: 750 NVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGG-SPPHAATFTAILD 797



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 62/127 (48%), Gaps = 11/127 (8%)

Query: 109 LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
           LF Q K      D     ++I      G+  EA R+F RM++ G  P+A TY +LI GL 
Sbjct: 493 LFEQSKAAAENLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLC 552

Query: 169 AAADGNAK----ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            + +   +    +L D     +EMV  G  P+A TYT +     +  +VD A  +L++  
Sbjct: 553 RSRENRVERAFALLHD-----LEMV--GYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEAS 605

Query: 225 AKGFVPD 231
           ++G+  D
Sbjct: 606 SRGWNAD 612



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 78/190 (41%), Gaps = 36/190 (18%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F +M   G   N V    +   LSK G    A ++   +   G  PD V +  +++ +  
Sbjct: 388 FEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCK 447

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA-----------------AAAD----- 172
            G+  EA ++   +     +PN   Y+ L+KGL                  AAA+     
Sbjct: 448 LGRLDEAAQLLDELDKCSSSPNLQLYSSLVKGLCDGGSVENTLDDLFEQSKAAAENLDPG 507

Query: 173 -------GNAKI--LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ--KVDEARGLLQ 221
                  G  K   L +A +    MV +G +P+A TY  +     R++  +V+ A  LL 
Sbjct: 508 LCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLH 567

Query: 222 QMKAKGFVPD 231
            ++  G++PD
Sbjct: 568 DLEMVGYLPD 577



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 6/129 (4%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG-VAPNAYTYAVL 163
           +A+  F  +K K   PD+     +++    AG  ++A  VF  M+A G V P+   +  +
Sbjct: 172 DAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAM 231

Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           ++ L       AK + +A++   +M   G  P+A  Y  + +   +A    EA  +L  M
Sbjct: 232 VRTLL-----KAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNM 286

Query: 224 KAKGFVPDE 232
            AK  VP E
Sbjct: 287 LAKACVPTE 295



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/140 (22%), Positives = 64/140 (45%), Gaps = 6/140 (4%)

Query: 102 LTHEALQLFAQIKDK-GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
           +T  A+  F    ++ G   DV  +  ++    +     +   +   ML +G+APN +++
Sbjct: 98  VTGTAISFFRWAGEQAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSF 157

Query: 161 AVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
            +LI+  A     +     DA      M  K  +P+  T+  + +   +A   ++A  + 
Sbjct: 158 NILIRSFARTRRAD-----DAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVF 212

Query: 221 QQMKAKGFVPDEKAVKEALI 240
            +M A GFVP ++A+  A++
Sbjct: 213 HEMMAMGFVPPDRALHTAMV 232


>gi|357130030|ref|XP_003566661.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 827

 Score = 87.8 bits (216), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 88/168 (52%), Gaps = 9/168 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F KM ++GL  + V       +L K G + +A ++F  +  KGHMPD+V+++ ++  Y
Sbjct: 323 KMFRKMTSKGLIPDTVTFSSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDIVSYSILLHGY 382

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           A+ G+  +   +F  M   G+  N +   +LI     +A     ++ +A     EM G+G
Sbjct: 383 ATEGRFADMNNLFHSMADKGIVSNCHCINILI-----SAHAKRGMMDEAMLVFTEMQGQG 437

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
           +RPN  TY+ +  AF R  ++ +A     QM + G  P+  AV  +LI
Sbjct: 438 VRPNVVTYSTLISAFCRMGRLADAMEKFSQMISIGIEPN-TAVYHSLI 484



 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 104/206 (50%), Gaps = 12/206 (5%)

Query: 22  ITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKKVVDEEPTDPR--NLQEIFH 79
           +T +   ++L +   S   +   +Y+ TK  +P     +  ++    T+ R  ++  +FH
Sbjct: 338 VTFSSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDIVS-YSILLHGYATEGRFADMNNLFH 396

Query: 80  KMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
            M  +G+ +N      +  A +K G+  EA+ +F +++ +G  P+VV ++ +I A+   G
Sbjct: 397 SMADKGIVSNCHCINILISAHAKRGMMDEAMLVFTEMQGQGVRPNVVTYSTLISAFCRMG 456

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM-RP 195
           +  +A+  F +M++ G+ PN   Y  LI G     D     L  A++++ EM+ KG+ RP
Sbjct: 457 RLADAMEKFSQMISIGIEPNTAVYHSLIHGFCMHGD-----LVKAKEFISEMMSKGLHRP 511

Query: 196 NAGTYTAVFEAFVRAQKVDEARGLLQ 221
           N   ++++  +     +V +A+ +  
Sbjct: 512 NIVFFSSIIHSLCIEGRVMDAQDVFN 537



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 89/193 (46%), Gaps = 28/193 (14%)

Query: 77  IFHKMRTEGL-----TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +F++M  +G+     T N++   DAL K     +A  +  Q+ DKG  PD V + A+I  
Sbjct: 254 LFNEMVQKGVVPDVGTYNSI--VDALCKARAMDKAEFVLRQMVDKGVEPDGVTYNAIIHG 311

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y+ +G  KE+ ++F +M + G+ P+  T++  +  L     G +K   DA++    M  K
Sbjct: 312 YSCSGHWKESAKMFRKMTSKGLIPDTVTFSSFMSSL--CKHGRSK---DAEEIFQYMTTK 366

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAV--------KEALIDK- 242
           G  P+  +Y+ +   +    +  +   L   M  KG V +   +        K  ++D+ 
Sbjct: 367 GHMPDIVSYSILLHGYATEGRFADMNNLFHSMADKGIVSNCHCINILISAHAKRGMMDEA 426

Query: 243 -------RGQGFR 248
                  +GQG R
Sbjct: 427 MLVFTEMQGQGVR 439



 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 72/148 (48%), Gaps = 8/148 (5%)

Query: 87  TNNAVKMFDALSKDGLTHEALQ-LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVF 145
           T  A      L     T EA+  L  ++ +   +PD +++  VI++     + +EAL + 
Sbjct: 159 TIQATTFLKCLCHAKRTDEAVDVLLHRMSELSCVPDAISYNTVIKSLCGDSRSQEALDMV 218

Query: 146 MRMLASG--VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAV 203
            RM   G   +P+  ++  +I G     +     +  A     EMV KG+ P+ GTY ++
Sbjct: 219 QRMAKEGGRCSPDVVSFNTVIHGFFKQGE-----VSKACNLFNEMVQKGVVPDVGTYNSI 273

Query: 204 FEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +A  +A+ +D+A  +L+QM  KG  PD
Sbjct: 274 VDALCKARAMDKAEFVLRQMVDKGVEPD 301



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 68/133 (51%), Gaps = 5/133 (3%)

Query: 99  KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAY 158
           K G   +A  LF ++  KG +PDV  + ++++A   A    +A  V  +M+  GV P+  
Sbjct: 244 KQGEVSKACNLFNEMVQKGVVPDVGTYNSIVDALCKARAMDKAEFVLRQMVDKGVEPDGV 303

Query: 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218
           TY  +I G + +  G+ K   ++ K   +M  KG+ P+  T+++   +  +  +  +A  
Sbjct: 304 TYNAIIHGYSCS--GHWK---ESAKMFRKMTSKGLIPDTVTFSSFMSSLCKHGRSKDAEE 358

Query: 219 LLQQMKAKGFVPD 231
           + Q M  KG +PD
Sbjct: 359 IFQYMTTKGHMPD 371



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 57/133 (42%), Gaps = 5/133 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D     G   +A  +   +   G  PDVV +  ++  Y  +G+  + L +F  ML   
Sbjct: 554 LIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTNNTLVSGYCKSGKIDDGLILFREMLHKK 613

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V P   TY +++ GL  A   +A     A+K   EM+  G   +  TY  + +   R   
Sbjct: 614 VKPTTVTYNIVLDGLLRAGRTSA-----AKKMFHEMIDSGTAVDIDTYKILLKGLCRNDL 668

Query: 213 VDEARGLLQQMKA 225
            DEA  L  ++ A
Sbjct: 669 TDEAITLFHKLGA 681



 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/184 (22%), Positives = 71/184 (38%), Gaps = 32/184 (17%)

Query: 86  LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVF 145
           +TNN   +     K G   + L LF ++  K   P  V +  V++    AG+   A ++F
Sbjct: 584 VTNNT--LVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYNIVLDGLLRAGRTSAAKKMF 641

Query: 146 MRMLASGVAPNAYTYAVLIKGLA---------------AAADG--NAKILG--------- 179
             M+ SG A +  TY +L+KGL                 A D   +  IL          
Sbjct: 642 HEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTMINALYKV 701

Query: 180 ----DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAV 235
               +A      +   G+ PN  TY  +    ++   V+EA  +   M+  G  P  + +
Sbjct: 702 RRREEANDLFAAISTSGLVPNVSTYGVMIRNLLKEGSVEEADTMFSSMEKSGCAPSSRLL 761

Query: 236 KEAL 239
            + +
Sbjct: 762 NDII 765



 Score = 41.2 bits (95), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 3/96 (3%)

Query: 75  QEIFHKMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +++FH+M   G     +    +   L ++ LT EA+ LF ++       D+     +I A
Sbjct: 638 KKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTMINA 697

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
                + +EA  +F  +  SG+ PN  TY V+I+ L
Sbjct: 698 LYKVRRREEANDLFAAISTSGLVPNVSTYGVMIRNL 733


>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
          Length = 731

 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 80/160 (50%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +++F +M  EGL  + V    +     K G +HEAL +FA++  KG MPDVV  T++I  
Sbjct: 280 RKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHV 339

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              AG  + A+ +  +M   G+  N  T+  LI G           L DA   +  M   
Sbjct: 340 MCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKG-----FLDDALLAVRGMKQC 394

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            ++P+   Y A+   +    ++DEAR LL +M+AKG  PD
Sbjct: 395 RIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPD 434



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 65/131 (49%), Gaps = 5/131 (3%)

Query: 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
           G   EA +L  +++ KG  PDVV ++ +I AY        A  +  +ML  GV P+A TY
Sbjct: 414 GRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITY 473

Query: 161 AVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
           + LI+ L        K L DA      M+  G++P+  TYT++ +   +   V+ A  L 
Sbjct: 474 SSLIRVLCG-----EKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLH 528

Query: 221 QQMKAKGFVPD 231
            +M   G +PD
Sbjct: 529 DKMVKAGVLPD 539



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 75/160 (46%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +  F  M ++G+  N      +  AL   G   EAL +   ++  G  P+VV +  ++ A
Sbjct: 175 RRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAA 234

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +  AG+   A R+   M   G+ PN  T+  ++ G+  A       + DA+K   EMV +
Sbjct: 235 FFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVNGMCKAGK-----MEDARKVFDEMVRE 289

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G+ P+  +Y  +   + +A    EA  +  +M  KG +PD
Sbjct: 290 GLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPD 329



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 71/159 (44%), Gaps = 8/159 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +MR  GL  N V    + D   K G   +AL     +K     P VV + A+I  Y 
Sbjct: 352 LVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYC 411

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G+  EA  +   M A G+ P+  TY+ +I       D ++    + Q     M+ KG+
Sbjct: 412 MVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQ-----MLEKGV 466

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
            P+A TY+++       +++ +A  L + M   G  PDE
Sbjct: 467 LPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDE 505



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 88/185 (47%), Gaps = 8/185 (4%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+ H+M  +GL  + V    +  A  K+  TH A +L  Q+ +KG +PD + ++++I  
Sbjct: 420 RELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRV 479

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
                +  +A  +F  M+  G+ P+ +TY  LI G     +GN +    A     +MV  
Sbjct: 480 LCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDG--HCKEGNVE---SALSLHDKMVKA 534

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVI 251
           G+ P+  TY+ +     ++ +  EA+ LL ++  +  +P        +   R    + V+
Sbjct: 535 GVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEDPIPANTKYDALMHCCRKAELKSVL 594

Query: 252 NILFG 256
            +L G
Sbjct: 595 ALLKG 599



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 80/169 (47%), Gaps = 9/169 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
            I   MR  G   N V    +  A  + G    A +L   +++ G  P++V   +++   
Sbjct: 211 SILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVNGM 270

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             AG+ ++A +VF  M+  G+AP+  +Y  L+ G   A   +     +A     EM  KG
Sbjct: 271 CKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSH-----EALSVFAEMTQKG 325

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           + P+  T+T++     +A  ++ A  L++QM+ +G   +E     ALID
Sbjct: 326 IMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFT-ALID 373



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 69/148 (46%), Gaps = 12/148 (8%)

Query: 86  LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVF 145
           L  NAV +  ALS   LT  A + F  +   G  P+V  +  ++ A    G  KEAL + 
Sbjct: 157 LAYNAVLL--ALSDASLT-SARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSIL 213

Query: 146 MRMLASGVAPNAYTYAVLIKGL--AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAV 203
             M  +G  PN  TY  L+     A   DG  +++G        M   G++PN  T+ ++
Sbjct: 214 RDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVG-------MMREGGLKPNLVTFNSM 266

Query: 204 FEAFVRAQKVDEARGLLQQMKAKGFVPD 231
                +A K+++AR +  +M  +G  PD
Sbjct: 267 VNGMCKAGKMEDARKVFDEMVREGLAPD 294



 Score = 43.9 bits (102), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 76/174 (43%), Gaps = 9/174 (5%)

Query: 62  KVVDEEPTDPRNLQ--EIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHM 119
           K+  E+P  P N +   + H  R   L  + + +       GL +EA +++  + D+   
Sbjct: 565 KLYHEDPI-PANTKYDALMHCCRKAEL-KSVLALLKGFCMKGLMNEADKVYQSMLDRNWN 622

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
            D   ++ +I  +  AG   +AL    +ML  G APN+ +   LI+GL      N  ++ 
Sbjct: 623 LDGSVYSVLIHGHCRAGNVMKALSFHKQMLQGGFAPNSTSTISLIRGLFE----NGMVV- 677

Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK 233
           +A + + +++      +A    A+ +  +    VD    +L  M   G +P  +
Sbjct: 678 EADQVIQQLLNYCSLADAEASKALIDLNLNEGNVDAVLDVLHGMAKDGLLPSPR 731


>gi|255561697|ref|XP_002521858.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538896|gb|EEF40494.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 87/184 (47%), Gaps = 10/184 (5%)

Query: 53  LPPPYDPFKKVVDEEPTDPR--NLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEAL 107
           L P    F  +++    D R     E+  +M  +G   + V    + +   K+G  H+AL
Sbjct: 49  LEPNLITFNMIINGLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQAL 108

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
            L A++   G  P+VV +T++I +   AG    A+  F +M   G+ PN  TY  +I G 
Sbjct: 109 VLHAEMVRNGLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGF 168

Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
           A        +L +A + L EM   G  P+  TY A+        +++EA GLLQ M  KG
Sbjct: 169 AQQG-----LLDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKG 223

Query: 228 FVPD 231
            +PD
Sbjct: 224 VLPD 227



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 77/153 (50%), Gaps = 8/153 (5%)

Query: 81  MRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ 137
           M  +GL  N +    + + L +DG   E  ++  ++  KG++PD V +  ++  Y   G 
Sbjct: 44  MGLKGLEPNLITFNMIINGLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGN 103

Query: 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA 197
             +AL +   M+ +G++PN  TY  LI  +  A +     L  A ++  +M  +G+ PN 
Sbjct: 104 FHQALVLHAEMVRNGLSPNVVTYTSLINSMCKAGN-----LNRAMEFFDQMHVRGLCPNE 158

Query: 198 GTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
            TYT +   F +   +DEA  +L +M   GF+P
Sbjct: 159 RTYTTIINGFAQQGLLDEAYRVLNEMTRSGFIP 191



 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 81/160 (50%), Gaps = 8/160 (5%)

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E F +M   GL  N      + +  ++ GL  EA ++  ++   G +P +V + A+I  +
Sbjct: 144 EFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRVLNEMTRSGFIPSIVTYNALINGH 203

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+ +EA+ +   M+  GV P+  +Y+ +I G A   +     L  A +  +EM+GK 
Sbjct: 204 CVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFARNQE-----LDRAFQMKVEMIGKS 258

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           + P+A TY+++ +     +++ EA  + Q+M      PDE
Sbjct: 259 VLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKLPPDE 298



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 84/181 (46%), Gaps = 24/181 (13%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLT-------------------HEALQLF 110
           + R    I +    +GL + A ++ + +++ G                      EA+ L 
Sbjct: 157 NERTYTTIINGFAQQGLLDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLL 216

Query: 111 AQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAA 170
             +  KG +PDVV+++ +I  +A   +   A ++ + M+   V P+A TY+ LI+GL   
Sbjct: 217 QDMVGKGVLPDVVSYSTIISGFARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCE- 275

Query: 171 ADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
                + L +A     EM+   + P+  TYT +  A+ +   +++A  L  +M  KGF+P
Sbjct: 276 ----QRRLTEACDMFQEMLTIKLPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLP 331

Query: 231 D 231
           D
Sbjct: 332 D 332



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 67/160 (41%), Gaps = 8/160 (5%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F +M   G   N V    M D   K   T EA      +  KG  P+++    +I     
Sbjct: 6   FKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIINGLCR 65

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            G+ KE   V + M   G  P+  TY  L+ G     + +  ++  A     EMV  G+ 
Sbjct: 66  DGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHA-----EMVRNGLS 120

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
           PN  TYT++  +  +A  ++ A     QM  +G  P+E+ 
Sbjct: 121 PNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERT 160



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 75/174 (43%), Gaps = 10/174 (5%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +A  K+G  ++AL L  ++  KG +PD V +  +I       + KEA R+ +++    
Sbjct: 304 LINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLINGLNKQARSKEARRLLLKLFYDD 363

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKIL--GDAQKYLME--------MVGKGMRPNAGTYTA 202
             P+A TY  LI+        +A  L  G   K LM+        M+ K  +PN   Y  
Sbjct: 364 SIPSAVTYNTLIENCCNIEFKSAVALVKGFCMKGLMDEADQVFESMINKNHKPNEAIYNV 423

Query: 203 VFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFG 256
           +     R   V +A  L ++M    FVP    V   +     +G  G +N + G
Sbjct: 424 IIHGHCRIGNVLKAYKLYKEMVHVDFVPHTVTVLALVKALFTEGMDGELNEVIG 477



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 6/151 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA  +F ++      PD   +T +I AY   G   +AL +   M+  G  P+A TY VLI
Sbjct: 281 EACDMFQEMLTIKLPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLI 340

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            GL   A        +A++ L+++      P+A TY  + E     +    A  L++   
Sbjct: 341 NGLNKQARSK-----EARRLLLKLFYDDSIPSAVTYNTLIENCCNIE-FKSAVALVKGFC 394

Query: 225 AKGFVPDEKAVKEALIDKRGQGFRGVINILF 255
            KG + +   V E++I+K  +    + N++ 
Sbjct: 395 MKGLMDEADQVFESMINKNHKPNEAIYNVII 425



 Score = 44.3 bits (103), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 58/146 (39%), Gaps = 15/146 (10%)

Query: 90  AVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRML 149
           AV +       GL  EA Q+F  + +K H P+   +  +I  +   G   +A +++  M+
Sbjct: 386 AVALVKGFCMKGLMDEADQVFESMINKNHKPNEAIYNVIIHGHCRIGNVLKAYKLYKEMV 445

Query: 150 ASGVAPNAYTYAVLIKGL-AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFV 208
                P+  T   L+K L     DG           L E++G  +R    T   + +  V
Sbjct: 446 HVDFVPHTVTVLALVKALFTEGMDGE----------LNEVIGDILRSCKLTDAELSKVLV 495

Query: 209 RAQK----VDEARGLLQQMKAKGFVP 230
              +    +D    LL +M   G +P
Sbjct: 496 EINQKEGNMDMVFNLLTEMAKDGLIP 521


>gi|326527027|dbj|BAK04455.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 90/175 (51%), Gaps = 13/175 (7%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F KM++ GL  N V       +L K G + EA ++F  +  KGH PD+V++  ++  Y
Sbjct: 356 KMFRKMKSRGLIPNIVICNSFLASLCKHGRSKEAAEIFDSMTAKGHKPDIVSYCTLLHGY 415

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           AS G   + + +F  M ++G+A +   + +LI   A        ++ DA     EM  +G
Sbjct: 416 ASEGWFADMIGLFNSMKSNGIAADCRVFNILIHAYAKRG-----MVDDAMLIFTEMQQQG 470

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGF 247
           + P+  TY+ V  AF R  ++ +A     QM A+G  P+  AV  ++I    QGF
Sbjct: 471 VSPDVVTYSTVISAFSRMGRLTDAMEKFNQMVARGIQPN-TAVYHSII----QGF 520



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 86/160 (53%), Gaps = 11/160 (6%)

Query: 77  IFHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +F+ M++ G+  +  ++F+ L    +K G+  +A+ +F +++ +G  PDVV ++ VI A+
Sbjct: 427 LFNSMKSNGIAADC-RVFNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISAF 485

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           +  G+  +A+  F +M+A G+ PN   Y  +I+G           L  A++ + EM+ KG
Sbjct: 486 SRMGRLTDAMEKFNQMVARGIQPNTAVYHSIIQGFCMHGG-----LVKAKELVSEMINKG 540

Query: 193 M-RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + RP+   + +V  +  +  +V +A  +   +   G  PD
Sbjct: 541 IPRPDIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGERPD 580



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 9/157 (5%)

Query: 75  QEIFHKMRTEGLTNNAVKMFDA----LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           +E+  +M  +G+    +  F++    L KDG   +A  +F  + D G  PDV+  T++I+
Sbjct: 530 KELVSEMINKGIPRPDIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLID 589

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
            Y   G+  +A ++   M   GV  +  TY+ L+ G       N +I  D      EM  
Sbjct: 590 GYCLVGKMDKAFKILDAMEVVGVETDIVTYSTLLDGYFK----NGRI-NDGLTLFREMQR 644

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
           KG++PN  TY  +     RA +   AR    +M   G
Sbjct: 645 KGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESG 681



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 71/161 (44%), Gaps = 10/161 (6%)

Query: 76  EIFHKMRTEG--LTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           ++F  M  EG   + N V    +     K+G T +A  LF ++  +G  PDVV +  +I+
Sbjct: 249 DLFQMMAKEGGACSPNVVAYNTVIHGFFKEGETGKACSLFHEMTRQGVKPDVVTYNLIID 308

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
           A   A    +A  V  +M  +G  P+  TY  +I G A         L +A K   +M  
Sbjct: 309 ALCKARAMDKAELVLRQMTTNGAQPDTVTYNCMIHGYATLGR-----LKEAAKMFRKMKS 363

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +G+ PN     +   +  +  +  EA  +   M AKG  PD
Sbjct: 364 RGLIPNIVICNSFLASLCKHGRSKEAAEIFDSMTAKGHKPD 404



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 67/159 (42%), Gaps = 33/159 (20%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFM-RMLASGVAPNAYTYAVLI 164
            L LF  I   G     +  + +++    A + +EA+ V + RM   G  PN ++Y++++
Sbjct: 176 GLVLFGCILRTGLKIHQITASTLLKCLCYANRTEEAVNVLLHRMSELGCVPNVFSYSIIL 235

Query: 165 KGLA--------------AAADGNAKI------------------LGDAQKYLMEMVGKG 192
           KGL                A +G A                     G A     EM  +G
Sbjct: 236 KGLCDNSMSQRALDLFQMMAKEGGACSPNVVAYNTVIHGFFKEGETGKACSLFHEMTRQG 295

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           ++P+  TY  + +A  +A+ +D+A  +L+QM   G  PD
Sbjct: 296 VKPDVVTYNLIIDALCKARAMDKAELVLRQMTTNGAQPD 334



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/170 (21%), Positives = 74/170 (43%), Gaps = 10/170 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +I   M   G+  + V    + D   K+G  ++ L LF +++ KG  P+ V +  ++   
Sbjct: 602 KILDAMEVVGVETDIVTYSTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGL 661

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK- 191
             AG+   A + F  M+ SG       Y +++ GL      +  I+      L + +G  
Sbjct: 662 FRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAII------LFQKLGTM 715

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
            ++ +      +  A  + Q+ +EA+ L   + A G +P+E      +I+
Sbjct: 716 NVKFSITILNTMINAMYKVQRKEEAKELFATISASGLLPNESTYGVMIIN 765



 Score = 37.7 bits (86), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 60/152 (39%), Gaps = 8/152 (5%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           FH+M   G T        +   L ++    EA+ LF ++        +     +I A   
Sbjct: 674 FHEMIESGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSITILNTMINAMYK 733

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
             + +EA  +F  + ASG+ PN  TY V+I  L    DG  +   DA      M   G+ 
Sbjct: 734 VQRKEEAKELFATISASGLLPNESTYGVMIINL--LKDGAVE---DANNMFSSMEKSGIV 788

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK 226
           P +     +    +   ++ +A   L ++  K
Sbjct: 789 PGSRLLNRIIRMLLEKGEIAKAGNYLSKVDGK 820


>gi|414586649|tpg|DAA37220.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
 gi|414586650|tpg|DAA37221.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
          Length = 969

 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 91/179 (50%), Gaps = 15/179 (8%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M++ G+  +      + D+  K GL  +A   F +++  G  P VV +TA++ AY 
Sbjct: 477 LFQEMKSVGVIPDVYTYTILIDSFCKVGLIEQARSWFDEMESVGCSPSVVTYTALLHAYL 536

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN------AKILGDAQKYLME 187
              Q  +A  +F RM+ +G APN  TY+ L+ GL  A +        AK++G +     +
Sbjct: 537 KTKQVPQASDIFHRMVDAGCAPNTITYSALVDGLCKAGESQKACEVYAKMIGTSDNVGSD 596

Query: 188 MVGKG-----MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
              +G     + PN  TY A+ +   +A KV +A+ LL  M + G  P+   + +ALID
Sbjct: 597 FYFEGEHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDVMSSNGCEPNH-IIYDALID 654



 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 8/155 (5%)

Query: 73  NLQEIFHKMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           N QE+F +M   G     +    + DA+ KD     A+++ +Q+ +    P+VV +TA+I
Sbjct: 664 NAQEVFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPNVVTYTAMI 723

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
           +     G+ ++AL++   M   G  PN  TY  LI GL  +   +  +     +   +M+
Sbjct: 724 DGLCRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSL-----QLFTQMI 778

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            +G  PN  TY  +      A  +DEA  LL +MK
Sbjct: 779 TQGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMK 813



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 91/186 (48%), Gaps = 12/186 (6%)

Query: 49  TKSKLPPPYDPFKKVVDEEPTDPR-NLQ-EIFHKMRTEGLTNNAVK---MFDALSKDGLT 103
           +K    P    +  ++D    D R +L  ++  +M     T N V    M D L + G  
Sbjct: 673 SKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPNVVTYTAMIDGLCRIGEC 732

Query: 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
            +AL+L + ++ +G  P+VV +T++I+    +G+   +L++F +M+  G APN  TY VL
Sbjct: 733 QKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMITQGCAPNYVTYRVL 792

Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           I    AA      +L +A   L EM           Y +V + F  ++K   + GLL+++
Sbjct: 793 INHCCAAG-----LLDEAHSLLSEMKQTYWPKYVQGYCSVVQGF--SKKFIASLGLLEEL 845

Query: 224 KAKGFV 229
           ++ G V
Sbjct: 846 ESHGMV 851



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           QE+   M + G   N +    + D   K G    A ++F ++   G++P V  +T++I+A
Sbjct: 631 QELLDVMSSNGCEPNHIIYDALIDGFCKVGKLDNAQEVFFRMSKCGYLPTVHTYTSLIDA 690

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
                +   A++V  +ML S   PN  TY  +I GL    +        A K L  M  +
Sbjct: 691 MFKDRRLDLAIKVLSQMLESSCTPNVVTYTAMIDGLCRIGECQ-----KALKLLSMMEKR 745

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G  PN  TYT++ +   ++ KVD +  L  QM  +G  P+
Sbjct: 746 GCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMITQGCAPN 785



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/232 (24%), Positives = 99/232 (42%), Gaps = 20/232 (8%)

Query: 24  NTRVNATLQRSLSSSSDQP-TKKYVN--TKSKLPPPYDPFKKVVD-----EEPTDPRNL- 74
           N  +  +L  S  ++ D P   K +N       PP Y  +   +      EE   P  L 
Sbjct: 343 NPSLFNSLVHSYCNARDYPYAYKLLNRMAGCGCPPGYVVYNIFIGSICSGEELPSPDLLA 402

Query: 75  --QEIFHKMRTEGLTNNAVKMFD---ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
             ++++ +M       N V   +    L   G   +A Q+   +  KG +PD   ++ VI
Sbjct: 403 LAEKVYEEMLASSCVLNKVNTANFARCLCGMGKFDKAFQIIKLMMRKGFVPDTSTYSKVI 462

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
                A + ++A  +F  M + GV P+ YTY +LI            ++  A+ +  EM 
Sbjct: 463 TFLCEAMKVEKAFLLFQEMKSVGVIPDVYTYTILIDSFCKVG-----LIEQARSWFDEME 517

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
             G  P+  TYTA+  A+++ ++V +A  +  +M   G  P+      AL+D
Sbjct: 518 SVGCSPSVVTYTALLHAYLKTKQVPQASDIFHRMVDAGCAPN-TITYSALVD 568



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 74/171 (43%), Gaps = 9/171 (5%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F    T+ +  N V    + D L K     +A +L   +   G  P+ + + A+I+ +  
Sbjct: 599 FEGEHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDVMSSNGCEPNHIIYDALIDGFCK 658

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            G+   A  VF RM   G  P  +TY  LI  +        + L  A K L +M+     
Sbjct: 659 VGKLDNAQEVFFRMSKCGYLPTVHTYTSLIDAMF-----KDRRLDLAIKVLSQMLESSCT 713

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
           PN  TYTA+ +   R  +  +A  LL  M+ +G  P+      +LID  G+
Sbjct: 714 PNVVTYTAMIDGLCRIGECQKALKLLSMMEKRGCNPN-VVTYTSLIDGLGK 763



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 57/135 (42%), Gaps = 8/135 (5%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
           AL K+G   +AL +   I+ +    D V  T +I     A    EA+    RM  +   P
Sbjct: 251 ALCKEGRWSDALVM---IEREDFKLDTVLCTQMISGLMEASLFDEAISFLHRMRCNSCIP 307

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           N  TY  L+ G         K LG  ++ +  M+ +G  PN   + ++  ++  A+    
Sbjct: 308 NVVTYRTLLAGFL-----KKKQLGWCKRIISMMMNEGCNPNPSLFNSLVHSYCNARDYPY 362

Query: 216 ARGLLQQMKAKGFVP 230
           A  LL +M   G  P
Sbjct: 363 AYKLLNRMAGCGCPP 377



 Score = 44.7 bits (104), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 76/195 (38%), Gaps = 38/195 (19%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++   M   G   N V    + D L K G    +LQLF Q+  +G  P+ V +  +I   
Sbjct: 737 KLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMITQGCAPNYVTYRVLINHC 796

Query: 133 ASAGQGKEALRVFMRM-----------------------LAS----------GVAPNAYT 159
            +AG   EA  +   M                       +AS          G+   A  
Sbjct: 797 CAAGLLDEAHSLLSEMKQTYWPKYVQGYCSVVQGFSKKFIASLGLLEELESHGMVSIAPV 856

Query: 160 YAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGL 219
           Y +LI   + A  G  +   +  K +ME+       +  TYT++ +A   A ++++A  L
Sbjct: 857 YGLLIDSFSKA--GRLEKALELHKEMMEVSSSLNITSKDTYTSLIQALCLASQLEKAFEL 914

Query: 220 LQQMKAKGFVPDEKA 234
             ++  KG VP+  A
Sbjct: 915 YSEITRKGVVPELSA 929



 Score = 41.6 bits (96), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 28/136 (20%), Positives = 56/136 (41%), Gaps = 10/136 (7%)

Query: 97  LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
             + G   +AL+   ++KD G+ P    + A+++  A+AGQ     RV   M   G   +
Sbjct: 182 CCRHGAWAKALEELGRLKDFGYRPSGATYNALVQVLATAGQMDMGFRVQKEMSELGFCTD 241

Query: 157 AYTYAVLIKGLAAAAD-GNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
            +T     + L       +A ++ + + + ++ V           T +    + A   DE
Sbjct: 242 KFTVGCFAQALCKEGRWSDALVMIEREDFKLDTV---------LCTQMISGLMEASLFDE 292

Query: 216 ARGLLQQMKAKGFVPD 231
           A   L +M+    +P+
Sbjct: 293 AISFLHRMRCNSCIPN 308



 Score = 37.7 bits (86), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 3/78 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVA---HTAVIEAYASAGQGKEALRVFMRML 149
           + D+ SK G   +AL+L  ++ +     ++ +   +T++I+A   A Q ++A  ++  + 
Sbjct: 860 LIDSFSKAGRLEKALELHKEMMEVSSSLNITSKDTYTSLIQALCLASQLEKAFELYSEIT 919

Query: 150 ASGVAPNAYTYAVLIKGL 167
             GV P    +  LIKGL
Sbjct: 920 RKGVVPELSAFICLIKGL 937


>gi|302761712|ref|XP_002964278.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
 gi|300168007|gb|EFJ34611.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
          Length = 331

 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 79/157 (50%), Gaps = 8/157 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F KM  + +  N V    + + L K      A +LF ++  KG++P  V++  +I+ + 
Sbjct: 66  LFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFC 125

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
                  A  VF +M+ S   PN  TY  LI GL+ +    A     A + L  MV KG+
Sbjct: 126 KKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQA-----AAEVLDGMVKKGV 180

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
            PN  TY+ + + F + ++VDEA  LL+QM  +G  P
Sbjct: 181 TPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAP 217



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 72/160 (45%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +++F KM       N V    + D LSK G    A ++   +  KG  P+V  ++ +I+ 
Sbjct: 134 KDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDG 193

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +    +  EA ++  +M+  G+AP   TY +L+  L       A  L DA K    M  +
Sbjct: 194 FCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLC-----RADKLEDAFKLFRGMAQR 248

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              P   TY  +  A    +++D A  L  +M AKG  PD
Sbjct: 249 RCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPD 288



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 69/166 (41%), Gaps = 9/166 (5%)

Query: 79  HKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASA 135
            +M T G+  +A     +   L ++    EA  LF ++  +   P+VV +  +I     A
Sbjct: 33  EEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKA 92

Query: 136 GQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP 195
            + + A  +F  M   G  P   +Y  LI G     D     L  A+    +MV     P
Sbjct: 93  WRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKD-----LVAAKDVFDKMVRSNCVP 147

Query: 196 NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           N  TYT + +   ++ KV  A  +L  M  KG  P+  A    LID
Sbjct: 148 NVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPN-VATYSCLID 192



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 6/122 (4%)

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
           PD + +  ++E      +  +AL     M   G+ P+A+ Y  ++ GL        + + 
Sbjct: 7   PDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLC-----QEEKVE 61

Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
           +A+    +MV + + PN  TY  +     +A +++ A  L ++M  KG+VP E +    L
Sbjct: 62  EARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSY-NTL 120

Query: 240 ID 241
           ID
Sbjct: 121 ID 122



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K     +AL    ++  +G  PD   +  V+       + +EA  +F +M+   
Sbjct: 15  IVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQR 74

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN  TY  LI GL  A       +  A +   EM GKG  P   +Y  + + F + + 
Sbjct: 75  INPNVVTYNTLINGLCKAWR-----IETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKD 129

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +  A+ +  +M     VP+
Sbjct: 130 LVAAKDVFDKMVRSNCVPN 148



 Score = 44.3 bits (103), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 12/118 (10%)

Query: 58  DPFKKV--VDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQ 112
           D F KV  VDE         ++  +M T+G+    V    + ++L +     +A +LF  
Sbjct: 192 DGFCKVRRVDEA-------HKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRG 244

Query: 113 IKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAA 170
           +  +   P VV +  ++ A     Q   A R++  M+A G  P+A TY  L  GL  A
Sbjct: 245 MAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRA 302


>gi|414591656|tpg|DAA42227.1| TPA: PPR-814a [Zea mays]
          Length = 816

 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 86/174 (49%), Gaps = 13/174 (7%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +MR + +  + V    +  +L K G   EA  +F  +  KG  PDV ++T ++  YA
Sbjct: 313 VFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYA 372

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
           + G   +   +F  ML  G+AP+ YT+ VLIK  A     N  +L  A     EM   G+
Sbjct: 373 TKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYA-----NCGMLDKAMIIFNEMRDHGV 427

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGF 247
           +P+  TY  V  A  R  K+D+A     QM  +G VPD+ A    LI    QGF
Sbjct: 428 KPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAY-HCLI----QGF 476



 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 78/163 (47%), Gaps = 10/163 (6%)

Query: 73  NLQEIFHKMRTEGLTNNAVKMFDALSK----DGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           ++ ++F  M  +G+  + +  F+ L K     G+  +A+ +F +++D G  P VV +  V
Sbjct: 379 DMTDLFDLMLGDGIAPD-IYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTV 437

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I A    G+  +A+  F +M+  GV P+ Y Y  LI+G           L  A++ + E+
Sbjct: 438 IAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGS-----LLKAKELISEI 492

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +  GMR +   + ++     +  +V +A+ +       G  PD
Sbjct: 493 MNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPD 535



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 72/145 (49%), Gaps = 7/145 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHM--PDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           +  +L   G + +A  L   + + G +  PDVVA+  VI+ +   G   +A  +F  M+ 
Sbjct: 190 LLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQ 249

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
            G+ P+  TY+ ++  L       A+ +  A+ +L +MV KG+ P+  TY  +   +   
Sbjct: 250 RGIPPDLVTYSSVVHALC-----KARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSST 304

Query: 211 QKVDEARGLLQQMKAKGFVPDEKAV 235
            +  EA  + ++M+ +  +PD  A+
Sbjct: 305 GQWKEAVRVFKEMRRQSILPDVVAL 329



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 70/157 (44%), Gaps = 8/157 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+  ++   G+  + V    + + L K G   +A  +F    + G  PD V +  +++ 
Sbjct: 486 KELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDG 545

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y   G+ ++ALRVF  M+++G+ PN   Y  L+ G           + +      EM+ K
Sbjct: 546 YCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGR-----IDEGLSLFREMLQK 600

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
           G++P+   Y  + +    A +   A+    +M   G 
Sbjct: 601 GIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGI 637



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 33/172 (19%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFM-RMLAS 151
           + D  ++      AL  F Q+   G   D +  + +++ +  A +  EAL + + R    
Sbjct: 119 LMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEALDILLHRTPEL 178

Query: 152 GVAPNAYTYAVLIKGLA-----AAADGNAKIL------------------------GDAQ 182
           G  P+ ++Y +L+K L        AD   +++                        GD  
Sbjct: 179 GCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVN 238

Query: 183 K---YLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           K      EMV +G+ P+  TY++V  A  +A+ +D+A   L+QM  KG +PD
Sbjct: 239 KACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPD 290



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   K+G  ++A  LF ++  +G  PD+V +++V+ A   A    +A     +M+  G
Sbjct: 227 VIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKG 286

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V P+ +TY  LI G ++   G  K   +A +   EM  + + P+      +  +  +  K
Sbjct: 287 VLPDNWTYNNLIYGYSST--GQWK---EAVRVFKEMRRQSILPDVVALNTLMGSLCKYGK 341

Query: 213 VDEARGLLQQMKAKGFVPD 231
           + EAR +   M  KG  PD
Sbjct: 342 IKEARDVFDTMAMKGQNPD 360



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 69/157 (43%), Gaps = 8/157 (5%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F  M + G+  N V    + +   K G   E L LF ++  KG  P  + +  +I+   
Sbjct: 558 VFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLF 617

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG+   A   F  M  SG+A N  TY+++++GL        +   +A     E+    +
Sbjct: 618 EAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLF-----KNRCFDEAIFLFKELRAMNV 672

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           + +  T   +     + ++V+EA+ L   +   G VP
Sbjct: 673 KIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVP 709



 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 73/162 (45%), Gaps = 16/162 (9%)

Query: 76  EIFHKMRTEGLTNNAVKMFDALSKDGLTHEAL----QLFAQIKDKGHMPDVVAHTAVIEA 131
           E F++M  +G+  +    +  L +   TH +L    +L ++I + G   D+V   ++I  
Sbjct: 452 EKFNQMIDQGVVPDKYA-YHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINN 510

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM---EM 188
               G+  +A  +F   +  G+ P+A  Y +L+ G          ++G  +K L     M
Sbjct: 511 LCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYC--------LVGKMEKALRVFDAM 562

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           V  G+ PN   Y  +   + +  ++DE   L ++M  KG  P
Sbjct: 563 VSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKP 604



 Score = 42.7 bits (99), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 32/154 (20%), Positives = 64/154 (41%), Gaps = 8/154 (5%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           FH+M   G+  N      +   L K+    EA+ LF +++      D++    +I     
Sbjct: 629 FHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQ 688

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
             + +EA  +F  +  SG+ P A TY+++I  L         ++ +A+     M   G  
Sbjct: 689 TRRVEEAKDLFASISRSGLVPCAVTYSIMITNLLKEG-----LVEEAEDMFSSMQNAGCE 743

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
           P++     V    ++  ++  A   L ++  + F
Sbjct: 744 PDSRLLNHVVRELLKKNEIVRAGAYLSKIDERNF 777


>gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 580

 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 81/165 (49%), Gaps = 14/165 (8%)

Query: 77  IFHKMRTEGLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           ++++MR  GL+++   +    + L       E    FA I  +G+ P++V +  +I+   
Sbjct: 91  LYNQMRLSGLSSDRCTLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLC 150

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNA------KILGDAQKYLME 187
              +  EA R+F+RM   G  P+  TY  LIKGL    + N       ++L D  +Y + 
Sbjct: 151 MEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEI- 209

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
                 +PN  TY  + +   +  + DEA+ L ++MK +G +P+E
Sbjct: 210 ----NCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPNE 250



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 82/167 (49%), Gaps = 18/167 (10%)

Query: 75  QEIFHKMRTEGLTNNAV-------------KMFDALSKDGLTHEALQLFAQIKDKGHMPD 121
           +++F +M+T+G+  N +              + D L K+G   EA +L   + + G +PD
Sbjct: 235 KQLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPD 294

Query: 122 VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDA 181
           +V + ++IE +   G    A  +F+ M + G  P+  +Y VLI G +         + +A
Sbjct: 295 LVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLK-----VEEA 349

Query: 182 QKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
            K   EM+  G RPN  TY ++ +    A KVD+A+ L   MKA G 
Sbjct: 350 MKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGI 396



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 89/195 (45%), Gaps = 33/195 (16%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D  + +E+F  M ++G   + +    + +  SK     EA++L+ ++   G  P+V+ + 
Sbjct: 310 DLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYD 369

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA------------------ 168
           ++++    AG+  +A ++F  M A G+A N+YTY + + GL                   
Sbjct: 370 SLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSS 429

Query: 169 ----------AAADGNAKI--LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
                        DG  K   L  A +   ++  +G  PN  TYT +   F R  +VD+A
Sbjct: 430 NFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKA 489

Query: 217 RGLLQQMKAKGFVPD 231
             L+Q+M+A G  PD
Sbjct: 490 NVLIQKMEANGCTPD 504



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 70/160 (43%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +++F  M+  G+  N+       D L K+    EA++LF ++K      ++     +I+ 
Sbjct: 385 KKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDG 444

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              AG+ + A  +F ++   G  PN  TY ++I G           +  A   + +M   
Sbjct: 445 LCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQ-----VDKANVLIQKMEAN 499

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G  P+  TY  +   F  + K++E   LL +M  K   PD
Sbjct: 500 GCTPDIITYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPD 539



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 65/136 (47%), Gaps = 5/136 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +     G  + A +LF  +  KG  PDV+++  +I  Y+   + +EA++++  ML  G
Sbjct: 301 LIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVG 360

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN  TY  L+KG+  A       + DA+K    M   G+  N+ TY    +   +   
Sbjct: 361 KRPNVITYDSLLKGIFLAGK-----VDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDC 415

Query: 213 VDEARGLLQQMKAKGF 228
           + EA  L  ++K+  F
Sbjct: 416 LFEAMKLFTELKSSNF 431



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 11/152 (7%)

Query: 89  NAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRM 148
           N   + D L K G    A +LF ++ ++GH P+VV +T +I  +   GQ  +A  +  +M
Sbjct: 437 NLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKM 496

Query: 149 LASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFV 208
            A+G  P+  TY  L++G   +       L +  + L  M  K + P+A T + V +   
Sbjct: 497 EANGCTPDIITYNTLMRGFYESNK-----LEEVVQLLHRMAQKDVSPDAITCSIVVDMLS 551

Query: 209 RAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
           + +K  E   LL +       P +K V + L+
Sbjct: 552 KDEKYQECLHLLPRF------PIQKGVDKHLL 577



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 78/174 (44%), Gaps = 24/174 (13%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDK------GHMPDVVAHTA 127
           +F +M+  G T + V    +   L   G  + AL+L  ++ +          P+V+ +  
Sbjct: 161 LFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNI 220

Query: 128 VIEAYASAGQGKEALRVF----------MRMLASGVAPNAYTYAVLIKGLAAAADGNAKI 177
           +++     G+  EA ++F            ML  G+ P+  T+ VLI  L        K+
Sbjct: 221 IVDGLCKVGREDEAKQLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKEG----KV 276

Query: 178 LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + +A+K L  M+  G+ P+  TY ++ E F     ++ AR L   M +KG  PD
Sbjct: 277 I-EAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPD 329


>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
 gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
          Length = 609

 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 85/162 (52%), Gaps = 8/162 (4%)

Query: 73  NLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           +L      +R+ G   N V    +  A ++     EA++L  +++++G  P++V +  ++
Sbjct: 162 DLDGAMDHLRSMGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLV 221

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
           +A         A  V  +M+  G APN  T+  L+ G      GN   + DA+K L  MV
Sbjct: 222 DALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKR--GN---VDDARKLLGIMV 276

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            KGMRPN  TY+A+ +   ++QK  EA+ +L++MK +G  PD
Sbjct: 277 AKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPD 318



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 81/160 (50%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           Q++  KM   G   N +    + D   K G   +A +L   +  KG  P+VV ++A+I+ 
Sbjct: 234 QDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDG 293

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              + +  EA  V   M   GV P+A+TY+ LI GL       A  + +A++ L  M G 
Sbjct: 294 LCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLC-----KADKIEEAEQMLRRMAGS 348

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G  P+   Y+++  AF ++ K+ EA+  LQ+M+ +   PD
Sbjct: 349 GCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPD 388



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 78/161 (48%), Gaps = 9/161 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +++  +M   G T + V    +  A  K G   EA +   +++ +   PDVV +  VI+ 
Sbjct: 339 EQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDG 398

Query: 132 YASAGQGKEALRVFMRMLASG-VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
               G+  EA  +  +M  SG V P+  TY+ +I GL       + +L +AQK L  M  
Sbjct: 399 LCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLC-----KSDMLVEAQKLLDRMCK 453

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            G  P+  TYT + +   +  +++EA  LLQ MK  G  P+
Sbjct: 454 AGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPN 494



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 81/162 (50%), Gaps = 9/162 (5%)

Query: 72  RNLQEIFHKMRT-EGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGH-MPDVVAHTAVI 129
           + LQE+  + ++ + +T N V   D L K G   EA  +  Q+++ G  +PDVV ++ VI
Sbjct: 375 KTLQEMRKQRKSPDVVTYNTV--IDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVI 432

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
                +    EA ++  RM  +G  P+  TY  +I GL          L +A+  L  M 
Sbjct: 433 NGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGR-----LEEAEYLLQGMK 487

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             G  PN  TYT +     +A+KVDEA  ++++M+  G  P+
Sbjct: 488 RAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPN 529



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/112 (37%), Positives = 64/112 (57%), Gaps = 8/112 (7%)

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
           PDV ++  VI  + +AG    AL +   M ++G AP+A+T+  +I  +A A D     L 
Sbjct: 110 PDVCSYNIVISGFCNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGD-----LD 164

Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            A  +L  M   G  PN  TYTA+  AF RA+K++EA  LL++M+ +G  P+
Sbjct: 165 GAMDHLRSM---GCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPN 213



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 67/132 (50%), Gaps = 5/132 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K  +  EA +L  ++   G  PDVV +T +I+     G+ +EA  +   M  +G
Sbjct: 431 VINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAG 490

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            APN  TY  LI GL       A+ + +A++ + EM   G  PN  TY  +      + +
Sbjct: 491 CAPNVVTYTTLISGLC-----KARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGR 545

Query: 213 VDEARGLLQQMK 224
           + EA+ L+Q+MK
Sbjct: 546 IKEAQQLVQRMK 557



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 74/156 (47%), Gaps = 10/156 (6%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           Q++  +M   G   + V    + D L K G   EA  L   +K  G  P+VV +T +I  
Sbjct: 445 QKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISG 504

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV-G 190
              A +  EA RV   M  +G  PN  TY  ++ GL  +  G  K   +AQ+ +  M  G
Sbjct: 505 LCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVS--GRIK---EAQQLVQRMKDG 559

Query: 191 KG-MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           +    P+A TY  +  A + +  V EA  LL+QMK+
Sbjct: 560 RAECSPDAATYRTIVNALMSSDLVQEAEQLLEQMKS 595


>gi|357130476|ref|XP_003566874.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Brachypodium distachyon]
          Length = 810

 Score = 87.4 bits (215), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           ++ +MR +GL  N +      D   + G +  AL++   ++ +G  PD+VA+ A+I  + 
Sbjct: 563 VYQQMREKGLPPNIITYTSFIDGYCRTGCSDMALKMLNDVRRRGLQPDIVAYNALINGFC 622

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G    AL++ + +L  G+APN   Y  LI G       N  ++ +  K+   M+  G+
Sbjct: 623 QEGNMSHALQLLVILLKDGLAPNTVVYNSLITGYK-----NLNMMKEVSKFYESMIKGGI 677

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             +  TYT + + F +   V  A  L  +M AKG++PD
Sbjct: 678 VADTSTYTTLIDGFSKDGNVAFALELYSEMMAKGYIPD 715



 Score = 70.1 bits (170), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 74/155 (47%), Gaps = 9/155 (5%)

Query: 76  EIFHKMRTEGLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+  +M  +GL  +  ++      L  D    +A+ LF ++ D G +PDV  +  +I  +
Sbjct: 353 ELCRQMTGQGLLPSTFELSLVLKGLLNDRRWKDAVCLFEEMADSG-LPDVFTYNNLIHWH 411

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             A + +EAL +F RM  +GV P+  TY  L+ G           + +A K   EM  +G
Sbjct: 412 CQAHKLREALNLFDRMKKAGVKPSINTYNSLLMGYCKKG-----CMDEAVKLYSEMPMEG 466

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
            +PN  TY  +   ++  +  D A  LL +MK  G
Sbjct: 467 FKPNVVTYITLMRGYIAKKDFDNAYALLDEMKQNG 501



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 8/163 (4%)

Query: 72  RNLQEIFHKMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R    +F +M+  G+    N    +     K G   EA++L++++  +G  P+VV +  +
Sbjct: 418 REALNLFDRMKKAGVKPSINTYNSLLMGYCKKGCMDEAVKLYSEMPMEGFKPNVVTYITL 477

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           +  Y +      A  +   M  +GV+ N YTY VLI G+    D   ++ G  + ++ E 
Sbjct: 478 MRGYIAKKDFDNAYALLDEMKQNGVSCNDYTYNVLINGI-CMVDRVCEVDGMLKSFMSE- 535

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              G  P   TY ++   FV+A  +  A  + QQM+ KG  P+
Sbjct: 536 ---GFIPTMMTYNSIINGFVKAGMMGSAFTVYQQMREKGLPPN 575



 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 24/168 (14%)

Query: 84  EGLTNNAVKMFDALSKDGLT-------------------HEALQLFAQIKDKGHMPDVVA 124
           EG  ++A+++   L KDGL                     E  + +  +   G + D   
Sbjct: 624 EGNMSHALQLLVILLKDGLAPNTVVYNSLITGYKNLNMMKEVSKFYESMIKGGIVADTST 683

Query: 125 HTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKY 184
           +T +I+ ++  G    AL ++  M+A G  P+A+T+  L  GL  + D     +  A+K 
Sbjct: 684 YTTLIDGFSKDGNVAFALELYSEMMAKGYIPDAFTFTALTHGLCRSGD-----IDGAKKL 738

Query: 185 LMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           L EM    +RPN   Y  +   ++R  K+ EA  L  +M   G  PD+
Sbjct: 739 LEEMRRLDVRPNVFIYNMLINGYLRDCKLQEAFRLHDEMLNMGIQPDD 786



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 64/139 (46%), Gaps = 6/139 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M D L K G   EAL++  +++D G   DV+  T ++  Y    +   AL +F   L  G
Sbjct: 268 MVDVLVKTGRMEEALRVNDEMRDAGKKMDVIVATTLMRGYCLRQEVGNALNLFKETLKDG 327

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P    Y VLI+G          +   A +   +M G+G+ P+    + V +  +  ++
Sbjct: 328 IVPTKVMYGVLIRGCDQVG-----MTQKAYELCRQMTGQGLLPSTFELSLVLKGLLNDRR 382

Query: 213 VDEARGLLQQMKAKGFVPD 231
             +A  L ++M   G +PD
Sbjct: 383 WKDAVCLFEEMADSG-LPD 400



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 5/114 (4%)

Query: 87  TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFM 146
           T+    + D  SKDG    AL+L++++  KG++PD    TA+      +G    A ++  
Sbjct: 681 TSTYTTLIDGFSKDGNVAFALELYSEMMAKGYIPDAFTFTALTHGLCRSGDIDGAKKLLE 740

Query: 147 RMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTY 200
            M    V PN + Y +LI G           L +A +   EM+  G++P+  TY
Sbjct: 741 EMRRLDVRPNVFIYNMLINGYLRDCK-----LQEAFRLHDEMLNMGIQPDDTTY 789



 Score = 53.9 bits (128), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 72/176 (40%), Gaps = 13/176 (7%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D  N   +  +M+  G++ N      + + +       E   +      +G +P ++ + 
Sbjct: 486 DFDNAYALLDEMKQNGVSCNDYTYNVLINGICMVDRVCEVDGMLKSFMSEGFIPTMMTYN 545

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA--AAADGNAKILGDAQKY 184
           ++I  +  AG    A  V+ +M   G+ PN  TY   I G      +D   K+L D ++ 
Sbjct: 546 SIINGFVKAGMMGSAFTVYQQMREKGLPPNIITYTSFIDGYCRTGCSDMALKMLNDVRR- 604

Query: 185 LMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
                 +G++P+   Y A+   F +   +  A  LL  +   G  P+   V  +LI
Sbjct: 605 ------RGLQPDIVAYNALINGFCQEGNMSHALQLLVILLKDGLAPN-TVVYNSLI 653



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 6/131 (4%)

Query: 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
           G+T +A +L  Q+  +G +P     + V++   +  + K+A+ +F  M  SG+ P+ +TY
Sbjct: 346 GMTQKAYELCRQMTGQGLLPSTFELSLVLKGLLNDRRWKDAVCLFEEMADSGL-PDVFTY 404

Query: 161 AVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
             LI          A  L +A      M   G++P+  TY ++   + +   +DEA  L 
Sbjct: 405 NNLIHWHC-----QAHKLREALNLFDRMKKAGVKPSINTYNSLLMGYCKKGCMDEAVKLY 459

Query: 221 QQMKAKGFVPD 231
            +M  +GF P+
Sbjct: 460 SEMPMEGFKPN 470



 Score = 51.6 bits (122), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 5/123 (4%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +AL LF +++ +G+  D     A++ A    G  ++A+R+F  M  + + P+   YA+ I
Sbjct: 175 DALALFMEMRGRGYRVDAWMFDALMSACLKEGMHEDAVRLFDEMPGAEIDPDQRVYALAI 234

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
             L    DG     G A + L EM   G      TY  + +  V+  +++EA  +  +M+
Sbjct: 235 TALCKLGDG-----GRALRMLREMKEVGFDTCDFTYRTMVDVLVKTGRMEEALRVNDEMR 289

Query: 225 AKG 227
             G
Sbjct: 290 DAG 292



 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 66/158 (41%), Gaps = 10/158 (6%)

Query: 77  IFHKMRTEGLTNNAVKMFDALS----KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +F +MR  G   +A  MFDAL     K+G+  +A++LF ++      PD   +   I A 
Sbjct: 179 LFMEMRGRGYRVDA-WMFDALMSACLKEGMHEDAVRLFDEMPGAEIDPDQRVYALAITAL 237

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G G  ALR+   M   G     +TY  ++  L          + +A +   EM   G
Sbjct: 238 CKLGDGGRALRMLREMKEVGFDTCDFTYRTMVDVLVKTGR-----MEEALRVNDEMRDAG 292

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
            + +    T +   +   Q+V  A  L ++    G VP
Sbjct: 293 KKMDVIVATTLMRGYCLRQEVGNALNLFKETLKDGIVP 330



 Score = 43.9 bits (102), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 5/127 (3%)

Query: 102 LTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYA 161
           L   A   +A +  +G +PD+ + T ++   A     K+AL +FM M   G   +A+ + 
Sbjct: 137 LPSAATDTYAHMVARGVVPDIKSRTDLLIRTARGSSAKDALALFMEMRGRGYRVDAWMFD 196

Query: 162 VLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221
            L+   A   +G  +   DA +   EM G  + P+   Y     A  +      A  +L+
Sbjct: 197 ALMS--ACLKEGMHE---DAVRLFDEMPGAEIDPDQRVYALAITALCKLGDGGRALRMLR 251

Query: 222 QMKAKGF 228
           +MK  GF
Sbjct: 252 EMKEVGF 258



 Score = 37.0 bits (84), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 7/112 (6%)

Query: 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTY 200
           A   +  M+A GV P+  +   L+  +  A   +AK   DA    MEM G+G R +A  +
Sbjct: 141 ATDTYAHMVARGVVPDIKSRTDLL--IRTARGSSAK---DALALFMEMRGRGYRVDAWMF 195

Query: 201 TAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL--IDKRGQGFRGV 250
            A+  A ++    ++A  L  +M      PD++    A+  + K G G R +
Sbjct: 196 DALMSACLKEGMHEDAVRLFDEMPGAEIDPDQRVYALAITALCKLGDGGRAL 247


>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
          Length = 691

 Score = 87.4 bits (215), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 80/160 (50%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +++F +M  EGL  + V    +     K G +HEAL +FA++  KG MPDVV  T++I  
Sbjct: 240 RKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHV 299

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              AG  + A+ +  +M   G+  N  T+  LI G           L DA   +  M   
Sbjct: 300 MCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKG-----FLDDALLAVRGMRQC 354

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            ++P+   Y A+   +    ++DEAR LL +M+AKG  PD
Sbjct: 355 RIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPD 394



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 65/131 (49%), Gaps = 5/131 (3%)

Query: 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
           G   EA +L  +++ KG  PDVV ++ +I AY        A  +  +ML  GV P+A TY
Sbjct: 374 GRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITY 433

Query: 161 AVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
           + LI+ L        K L DA      M+  G++P+  TYT++ +   +   V+ A  L 
Sbjct: 434 SSLIRVLC-----EEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLH 488

Query: 221 QQMKAKGFVPD 231
            +M   G +PD
Sbjct: 489 DKMVKAGVLPD 499



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 76/160 (47%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +  F  M ++G+  N      +  AL   G   EAL +   ++  G  P+VV +  ++ A
Sbjct: 135 RRFFDSMLSDGVAPNVYTYNILIRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAA 194

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +  AG+   A R+   ML  G+ PN  T+  ++ G+  A       + DA+K   EM+ +
Sbjct: 195 FFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNGMCKAGK-----MEDARKVFDEMMRE 249

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G+ P+  +Y  +   + +A    EA  +  +M  KG +PD
Sbjct: 250 GLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPD 289



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 8/159 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +MR  GL  N V    + D   K G   +AL     ++     P VV + A+I  Y 
Sbjct: 312 LVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYC 371

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G+  EA  +   M A G+ P+  TY+ +I       D ++    + Q     M+ KG+
Sbjct: 372 MVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQ-----MLEKGV 426

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
            P+A TY+++       +++ +A  L + M   G  PDE
Sbjct: 427 LPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDE 465



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 70/148 (47%), Gaps = 12/148 (8%)

Query: 86  LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVF 145
           L  NAV +  ALS   LT  A + F  +   G  P+V  +  +I A    G  KEAL + 
Sbjct: 117 LAYNAVLL--ALSDASLT-SARRFFDSMLSDGVAPNVYTYNILIRALCGRGHRKEALSIL 173

Query: 146 MRMLASGVAPNAYTYAVLIKGL--AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAV 203
             M  +G  PN  TY  L+     A   DG  +++G        M+  G++PN  T+ ++
Sbjct: 174 RDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVG-------MMLDGGLKPNLVTFNSM 226

Query: 204 FEAFVRAQKVDEARGLLQQMKAKGFVPD 231
                +A K+++AR +  +M  +G  PD
Sbjct: 227 VNGMCKAGKMEDARKVFDEMMREGLAPD 254



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 79/168 (47%), Gaps = 9/168 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           I   MR  G   N V    +  A  + G    A +L   + D G  P++V   +++    
Sbjct: 172 ILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNGMC 231

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG+ ++A +VF  M+  G+AP+  +Y  L+ G   A   +     +A     EM  KG+
Sbjct: 232 KAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSH-----EALSVFAEMTQKGI 286

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
            P+  T+T++     +A  ++ A  L++QM+ +G   +E     ALID
Sbjct: 287 MPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFT-ALID 333



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 91/188 (48%), Gaps = 14/188 (7%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+ H+M  +GL  + V    +  A  K+  TH A +L  Q+ +KG +PD + ++++I  
Sbjct: 380 RELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRV 439

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM---EM 188
                +  +A  +F  M+  G+ P+ +TY  LI       DG+ K  G+ ++ L    +M
Sbjct: 440 LCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLI-------DGHCKE-GNVERALSLHDKM 491

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFR 248
           V  G+ P+  TY+ +     ++ +  EA+ LL ++  +  +P        +   R    +
Sbjct: 492 VKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEEPIPANTKYDALMHCCRKAELK 551

Query: 249 GVINILFG 256
            V+ +L G
Sbjct: 552 SVLALLKG 559



 Score = 45.1 bits (105), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 40/174 (22%), Positives = 76/174 (43%), Gaps = 9/174 (5%)

Query: 62  KVVDEEPTDPRNLQ--EIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHM 119
           K+  EEP  P N +   + H  R   L  + + +       GL +EA +++  + D+   
Sbjct: 525 KLYHEEPI-PANTKYDALMHCCRKAEL-KSVLALLKGFCMKGLMNEADKVYQSMLDRNWN 582

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
            D   ++ +I  +  AG   +AL    +ML  G APN+ +   LI+GL      N  ++ 
Sbjct: 583 LDGSVYSVLIHGHCRAGNVMKALSFHKQMLQRGFAPNSTSTISLIRGLFE----NGMVV- 637

Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK 233
           +A + + +++      +A    A+ +  +    VD    +L  M   G +P  +
Sbjct: 638 EADQVIQQLLNCCSLADAEASKALIDLNLNEGNVDAVLDVLHGMAKDGLLPSPR 691


>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
 gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
          Length = 698

 Score = 87.4 bits (215), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 58/184 (31%), Positives = 89/184 (48%), Gaps = 10/184 (5%)

Query: 53  LPPPYDPFKKVVDEEPTDPR--NLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEAL 107
           L P    F  VV+      R  + +++F +M  EGL  + V    +     K G +HEAL
Sbjct: 223 LKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEAL 282

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
            +FA++  KG MPDVV  T++I     AG  + A+ +   M   G+  N  T+  LI G 
Sbjct: 283 SVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGF 342

Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
                     L DA   + EM    ++P+   Y A+   +    ++DEAR L+++M+AKG
Sbjct: 343 CKKG-----FLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKG 397

Query: 228 FVPD 231
             PD
Sbjct: 398 VKPD 401



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 69/131 (52%), Gaps = 5/131 (3%)

Query: 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
           G   EA +L  +++ KG  PDVV ++ ++ AY   G    A ++  +ML +GV P+A TY
Sbjct: 381 GRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITY 440

Query: 161 AVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
           + LI+ L        K LGDA      M+  G++P+  TYT++ +   +   V+ A  L 
Sbjct: 441 SSLIRVLC-----EEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLH 495

Query: 221 QQMKAKGFVPD 231
            +M   G +PD
Sbjct: 496 DEMVKAGVLPD 506



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 63/115 (54%), Gaps = 6/115 (5%)

Query: 117 GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK 176
           G+ P V+A+ AV+ A + A     A R F  ML+ GVAPN YTY +L++ L     G+ K
Sbjct: 118 GYAPSVLAYNAVLLALSDASL-PSARRFFDSMLSDGVAPNVYTYNILVRALCGR--GHRK 174

Query: 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              +A   L +M G G  PNA TY  +  AF RA +VD A  L+  M+  G  P+
Sbjct: 175 ---EALSVLRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPN 226



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 81/168 (48%), Gaps = 9/168 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +   MR  G   NAV    +  A  + G    A +L   +++ G  P++V   +V+    
Sbjct: 179 VLRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGIC 238

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG+ ++A +VF  M+  G+AP+  +Y  L+ G       +     +A     EM  KG+
Sbjct: 239 KAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSH-----EALSVFAEMTRKGI 293

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
            P+  T+T++     +A  ++ A GL+++M+ +G   +E     ALID
Sbjct: 294 MPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFT-ALID 340



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 9/168 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +MR  GL  N +    + D   K G   +AL    +++     P VV + A+I  Y 
Sbjct: 319 LVREMRERGLQMNEITFTALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYC 378

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G+  EA  +   M A GV P+  TY+ ++       D ++    + Q     M+  G+
Sbjct: 379 MVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQ-----MLENGV 433

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
            P+A TY+++       +++ +A  L + M + G  PDE     +LID
Sbjct: 434 LPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDE-VTYTSLID 480



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 73/160 (45%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +  F  M ++G+  N      +  AL   G   EAL +   ++  G  P+ V +  ++ A
Sbjct: 142 RRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSVLRDMRGAGCDPNAVTYNTLVAA 201

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +  AG+   A R+   M   G+ PN  T+  ++ G+  A       + DA+K   EMV +
Sbjct: 202 FCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGR-----MEDARKVFDEMVKE 256

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G+ P+  +Y  +   + +     EA  +  +M  KG +PD
Sbjct: 257 GLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPD 296



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 90/188 (47%), Gaps = 14/188 (7%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+  +M  +G+  + V    +  A  K+G TH A QL  Q+ + G +PD + ++++I  
Sbjct: 387 RELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRV 446

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM---EM 188
                +  +A  +F  M++ G+ P+  TY  LI       DG+ K  G+ ++ L    EM
Sbjct: 447 LCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLI-------DGHCK-EGNVERALSLHDEM 498

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFR 248
           V  G+ P+  TY+ +     ++ +  EA+ LL ++  +  VP        +   R    +
Sbjct: 499 VKAGVLPDVVTYSVLINGLSKSARTKEAQRLLFKLYHEEPVPANIKYDALMRCCRNAELK 558

Query: 249 GVINILFG 256
            V+ +L G
Sbjct: 559 SVLALLKG 566



 Score = 44.7 bits (104), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 36/170 (21%), Positives = 73/170 (42%), Gaps = 7/170 (4%)

Query: 62  KVVDEEPTDPRNLQ-EIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMP 120
           K+  EEP  P N++ +   +        + + +       GL +EA +++  I D+    
Sbjct: 532 KLYHEEPV-PANIKYDALMRCCRNAELKSVLALLKGFCMKGLMNEADKVYQSILDRNWNL 590

Query: 121 DVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGD 180
           D   ++ +I  +   G   +AL    +ML  G APN+ +   LI+GL         ++ +
Sbjct: 591 DGSVYSVLIHGHCREGNVMKALSFHKQMLQCGFAPNSTSTISLIRGLFEKG-----MVVE 645

Query: 181 AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           A + + +++      +A    A+ +  ++   VD    +L  M   G +P
Sbjct: 646 ADQVIQQLLNCCSLADAEASKALIDLNLKEGNVDAVLDVLHGMARDGLLP 695


>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
 gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
          Length = 471

 Score = 87.4 bits (215), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 85/162 (52%), Gaps = 8/162 (4%)

Query: 73  NLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           +L      +R+ G   N V    +  A ++     EA++L  +++++G  P++V +  ++
Sbjct: 40  DLDGAMDHLRSMGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLV 99

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
           +A         A  V  +M+  G APN  T+  L+ G      GN   + DA+K L  MV
Sbjct: 100 DALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKR--GN---VDDARKLLGIMV 154

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            KGMRPN  TY+A+ +   ++QK  EA+ +L++MKA G  PD
Sbjct: 155 AKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPD 196



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 83/160 (51%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           Q++  KM   G   N +    + D   K G   +A +L   +  KG  P+VV ++A+I+ 
Sbjct: 112 QDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDG 171

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              + +  EA  V   M ASGV P+A+TY+ LI GL       A  + +A++ L  M G 
Sbjct: 172 LCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLC-----KADKIEEAEQMLRRMAGS 226

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G  P+   Y+++  AF ++ K+ EA+  LQ+M+ +   PD
Sbjct: 227 GCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPD 266



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 78/161 (48%), Gaps = 9/161 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +++  +M   G T + V    +  A  K G   EA +   +++ +   PDVV +  VI+ 
Sbjct: 217 EQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDG 276

Query: 132 YASAGQGKEALRVFMRMLASG-VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
               G+  EA  +  +M  SG V P+  TY+ +I GL       + +L +AQK L  M  
Sbjct: 277 LCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLC-----KSDMLVEAQKLLDRMCK 331

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            G  P+  TYT + +   +  +++EA  LLQ MK  G  P+
Sbjct: 332 AGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPN 372



 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 81/162 (50%), Gaps = 9/162 (5%)

Query: 72  RNLQEIFHKMRT-EGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGH-MPDVVAHTAVI 129
           + LQE+  + ++ + +T N V   D L K G   EA  +  Q+++ G  +PDVV ++ VI
Sbjct: 253 KTLQEMRKQRKSPDVVTYNTV--IDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVI 310

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
                +    EA ++  RM  +G  P+  TY  +I GL          L +A+  L  M 
Sbjct: 311 NGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGR-----LEEAEYLLQGMK 365

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             G  PN  TYT +     +A+KVDEA  ++++M+  G  P+
Sbjct: 366 RAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPN 407



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 67/132 (50%), Gaps = 5/132 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K  +  EA +L  ++   G  PDVV +T +I+     G+ +EA  +   M  +G
Sbjct: 309 VINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAG 368

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            APN  TY  LI GL       A+ + +A++ + EM   G  PN  TY  +      + +
Sbjct: 369 CAPNVVTYTTLISGLC-----KARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGR 423

Query: 213 VDEARGLLQQMK 224
           + EA+ L+Q+MK
Sbjct: 424 IKEAQQLVQRMK 435



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 72/154 (46%), Gaps = 10/154 (6%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           Q++  +M   G   + V    + D L K G   EA  L   +K  G  P+VV +T +I  
Sbjct: 323 QKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISG 382

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV-G 190
              A +  EA RV   M  +G  PN  TY  ++ GL  +  G  K   +AQ+ +  M  G
Sbjct: 383 LCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVS--GRIK---EAQQLVQRMKDG 437

Query: 191 KG-MRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           +    P+A TY  +  A + +  V EA  LL+QM
Sbjct: 438 RAECSPDAATYRTIVNALMSSDLVQEAEQLLEQM 471



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 56/99 (56%), Gaps = 8/99 (8%)

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
            +AG    AL +   M ++G AP+A+T+  +I  +A A D     L  A  +L  M   G
Sbjct: 1   CNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGD-----LDGAMDHLRSM---G 52

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             PN  TYTA+  AF RA+K++EA  LL++M+ +G  P+
Sbjct: 53  CDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPN 91


>gi|297797161|ref|XP_002866465.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312300|gb|EFH42724.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 977

 Score = 87.4 bits (215), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 46/157 (29%), Positives = 85/157 (54%), Gaps = 8/157 (5%)

Query: 78  FHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F  M  +G+  +A     + + L K+G  ++A ++F +++ KG  PDV ++  +I+ ++ 
Sbjct: 583 FRSMVEQGILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLIDGFSK 642

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            G  ++A  +F  M+ +G+  N   Y +L+ G   + +     +  A++ L EM GKG  
Sbjct: 643 LGNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFCRSGE-----IEKAKELLDEMSGKGFP 697

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           PNA TY  + + + ++  + EA  L  +MK KG VPD
Sbjct: 698 PNAVTYCTIIDGYCKSGDLAEAFQLFDEMKLKGLVPD 734



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/142 (27%), Positives = 67/142 (47%), Gaps = 11/142 (7%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +   K G   EA   F  + ++G + D   +T ++      G+  +A  +F  M   G
Sbjct: 566 LINEYCKKGKVIEACSAFRSMVEQGILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRGKG 625

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQK---YLMEMVGKGMRPNAGTYTAVFEAFVR 209
           +AP+ ++Y  LI G +         LG+ QK      EMV  G+  N   Y  +   F R
Sbjct: 626 IAPDVFSYGTLIDGFSK--------LGNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFCR 677

Query: 210 AQKVDEARGLLQQMKAKGFVPD 231
           + ++++A+ LL +M  KGF P+
Sbjct: 678 SGEIEKAKELLDEMSGKGFPPN 699



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 49/181 (27%), Positives = 80/181 (44%), Gaps = 9/181 (4%)

Query: 54  PPPYDPFKKVVDEEPTDPRNLQEIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLF 110
           P  YD F  V+ +E    +  + +F  M T G+T  A     + +   ++    +  +L 
Sbjct: 350 PMMYDYFICVMSKEGAMEK-AKALFDGMITFGVTPGARAYASLIEGFFREKNVRKGYELL 408

Query: 111 AQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAA 170
            +IK +  +     +   ++   S+G    A  +   M ASG  PN   Y  LIK     
Sbjct: 409 VEIKKRNIVISPYTYGTAVKGMCSSGDLDGAYNIVKEMGASGCRPNVVIYTTLIKTFLQK 468

Query: 171 ADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           +       GDA + L EM  +G+ P+   Y ++     +A+K+DEAR  L +M   GF P
Sbjct: 469 SR-----FGDAVRVLKEMREQGIAPDTFCYNSLIIGLSKAKKMDEARSFLLEMVENGFKP 523

Query: 231 D 231
           D
Sbjct: 524 D 524



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/148 (26%), Positives = 71/148 (47%), Gaps = 2/148 (1%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M D L K+G    A +LF  ++    MP V+ +T+++  Y   G+  E   VF  ++A+G
Sbjct: 814 MIDYLCKEGNLEAAKELFHHMQKANLMPTVITYTSLLNGYDKMGRRSEMFSVFDEVIAAG 873

Query: 153 VAPNAYTYAVLIKG-LAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           + P+   Y+V+I   L       A +L D Q +    V  G + +  T  A+   F +  
Sbjct: 874 IEPDNIMYSVIINAFLKEGMTTKALVLLD-QMFAKNAVDDGCKLSISTCRALLSGFAKVG 932

Query: 212 KVDEARGLLQQMKAKGFVPDEKAVKEAL 239
           +++ A  +++ M    ++PD   V E +
Sbjct: 933 EMEVAEKVVENMVRLKYIPDSSTVIELI 960



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/176 (23%), Positives = 74/176 (42%), Gaps = 43/176 (24%)

Query: 91  VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           +K F   S+ G   +A+++  +++++G  PD   + ++I   + A +  EA    + M+ 
Sbjct: 462 IKTFLQKSRFG---DAVRVLKEMREQGIAPDTFCYNSLIIGLSKAKKMDEARSFLLEMVE 518

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN-------------- 196
           +G  P+A+TY   I G   A +        A KY+ EM+  G+ PN              
Sbjct: 519 NGFKPDAFTYGAFISGYIEAGE-----FASADKYVKEMLECGVIPNKVLCTGLINEYCKK 573

Query: 197 ---------------------AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
                                A TYT +    V+  KV++A  +  +M+ KG  PD
Sbjct: 574 GKVIEACSAFRSMVEQGILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRGKGIAPD 629



 Score = 49.3 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/160 (24%), Positives = 70/160 (43%), Gaps = 7/160 (4%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+  +M  +G   NAV    + D   K G   EA QLF ++K KG +PD   +T +++ 
Sbjct: 685 KELLDEMSGKGFPPNAVTYCTIIDGYCKSGDLAEAFQLFDEMKLKGLVPDSFVYTTLVDG 744

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME-MVG 190
                  + A+ +F      G A ++  +  LI  +     G  ++  D    LM+    
Sbjct: 745 CCRLNDVERAITIF-ETNEKGCASSSAPFNALINWVFKF--GKTELTTDMINRLMDGSFD 801

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           K  +PN  TY  + +   +   ++ A+ L   M+    +P
Sbjct: 802 KFGKPNDVTYNIMIDYLCKEGNLEAAKELFHHMQKANLMP 841



 Score = 48.1 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 13/120 (10%)

Query: 140 EALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGT 199
           EAL +   M   G+ P+  +Y +LI GL        K L DA+  L+EM   G+  +   
Sbjct: 263 EALELKKSMSCKGLVPSRQSYNLLIDGLC-----KQKRLEDAKSLLVEMNSVGLFADNVA 317

Query: 200 YTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAV--------KEALIDKRGQGFRGVI 251
           Y+ + +  ++ +  D A GL+ +M + GF  D            KE  ++K    F G+I
Sbjct: 318 YSILIDGLLKGRNADAANGLVHEMVSHGFSIDPMMYDYFICVMSKEGAMEKAKALFDGMI 377


>gi|255556711|ref|XP_002519389.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541456|gb|EEF43006.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 634

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 88/181 (48%), Gaps = 16/181 (8%)

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F +M+  G+T +      + D   K GL  +A   F +++  G  P+VV +TA+I AY
Sbjct: 143 QLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWFDEMQQDGCAPNVVTYTALIHAY 202

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADG-----------NAKI-LGD 180
               +   A  +F  ML++G  PN  TY  LI G   A +            N K+ + D
Sbjct: 203 LKTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGHCKAGETEKACQIYARMKNDKVDIPD 262

Query: 181 AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
              Y   +  +   PN  TY A+ +   +A KV EAR LL+ M  +G  P++  + +ALI
Sbjct: 263 VDIYFRIVDSELKEPNVVTYGALVDGLCKAHKVKEARDLLETMSLEGCEPNQ-IIYDALI 321

Query: 241 D 241
           D
Sbjct: 322 D 322



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 89/198 (44%), Gaps = 26/198 (13%)

Query: 55  PPYDPFKKVVDEEPTDP------------------RNLQEIFHKMRTEGLTNNAV---KM 93
           P  D + ++VD E  +P                  +  +++   M  EG   N +    +
Sbjct: 261 PDVDIYFRIVDSELKEPNVVTYGALVDGLCKAHKVKEARDLLETMSLEGCEPNQIIYDAL 320

Query: 94  FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGV 153
            D   K G   EA ++F ++   G  P+V  ++++I+      +   AL+V  +ML +  
Sbjct: 321 IDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKLFKDKRLDLALKVLTKMLENSC 380

Query: 154 APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV 213
           APN   Y  ++ GL      +     +A + ++ M  KG  PN  TYTA+ + F +A +V
Sbjct: 381 APNVVIYTEMVDGLCKVGKTD-----EAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGRV 435

Query: 214 DEARGLLQQMKAKGFVPD 231
           D    LLQ M +KG  P+
Sbjct: 436 DRCLELLQLMTSKGCAPN 453



 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 76/158 (48%), Gaps = 10/158 (6%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++  KM       N V   +M D L K G T EA +L   +++KG  P+VV +TA+I+ +
Sbjct: 370 KVLTKMLENSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCYPNVVTYTAMIDGF 429

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             AG+    L +   M + G APN  TY VLI    AA      +L DA K L EM    
Sbjct: 430 GKAGRVDRCLELLQLMTSKGCAPNFITYRVLINHCCAAG-----LLDDAHKLLEEMKQTY 484

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
              + G Y  V E F  + +   + GLL ++   G VP
Sbjct: 485 WPKHIGMYRKVIEGF--SHEFVASLGLLAELSEDGSVP 520



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 81/167 (48%), Gaps = 9/167 (5%)

Query: 78  FHKMRTEGLTNNAVKMFD---ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           +++M   G+  N V + +    L   G   +A  +  ++  KG +PD   ++ VI    +
Sbjct: 75  YNEMLEMGVVLNKVNVCNFTRCLCCIGKFEKAYNVIREMMSKGFIPDSSTYSKVIGYLCN 134

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
           A + ++A ++F  M  +G+ P+ YTY  L+            ++  A+ +  EM   G  
Sbjct: 135 ASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVG-----LIEQARNWFDEMQQDGCA 189

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           PN  TYTA+  A+++ +K+  A  + + M + G VP+      ALID
Sbjct: 190 PNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPN-IVTYTALID 235



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 73/159 (45%), Gaps = 9/159 (5%)

Query: 77  IFHKMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +M ++G    ++   K+   L       +A QLF ++K  G  PDV  +T +++ + 
Sbjct: 109 VIREMMSKGFIPDSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFC 168

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G  ++A   F  M   G APN  TY  LI      A    + L  A +    M+  G 
Sbjct: 169 KVGLIEQARNWFDEMQQDGCAPNVVTYTALIH-----AYLKTRKLSRANEIFEMMLSNGC 223

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA-KGFVPD 231
            PN  TYTA+ +   +A + ++A  +  +MK  K  +PD
Sbjct: 224 VPNIVTYTALIDGHCKAGETEKACQIYARMKNDKVDIPD 262



 Score = 53.9 bits (128), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 57/117 (48%), Gaps = 1/117 (0%)

Query: 116 KGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD-GN 174
           +G  P  +   +++ AY  +G    A ++  +M+  G  P    Y +LI G+ +  D  +
Sbjct: 5   EGCYPSPMIFNSLVHAYCRSGDYFYAYKLLKKMVICGYQPGYVVYNILIGGICSTEDLPS 64

Query: 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +++G A++   EM+  G+  N               K ++A  ++++M +KGF+PD
Sbjct: 65  MEVIGLAERAYNEMLEMGVVLNKVNVCNFTRCLCCIGKFEKAYNVIREMMSKGFIPD 121


>gi|302815701|ref|XP_002989531.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
 gi|300142709|gb|EFJ09407.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
          Length = 436

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 84/171 (49%), Gaps = 10/171 (5%)

Query: 63  VVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM 119
           +  EE  +   L  +F KM  + +  N V    + + L K      A +LF ++  KG++
Sbjct: 159 LCQEEKVEEARL--LFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYV 216

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
           P  V++  +I+ +        A  VF +M+ S   PN  TY  LI GL+ +    A    
Sbjct: 217 PTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQA---- 272

Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
            A + L  MV KG+ PN  TY+ + + F + ++VDEA  LL+QM  +G  P
Sbjct: 273 -AAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAP 322



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 81/191 (42%), Gaps = 13/191 (6%)

Query: 44  KKYVNTKSKLPPPYDPFKKVVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKD 100
           K YV T+       D F K       D    +++F KM       N V    + D LSK 
Sbjct: 213 KGYVPTEVSYNTLIDGFCK-----KKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKS 267

Query: 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
           G    A ++   +  KG  P+V  ++ +I+ +    +  EA ++  +M+  G+AP   TY
Sbjct: 268 GKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTY 327

Query: 161 AVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
            +L+  L  A       L DA K    M  +   P   TY  +  A    +++D A  L 
Sbjct: 328 NILLNSLCRADK-----LEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLY 382

Query: 221 QQMKAKGFVPD 231
            +M AKG  PD
Sbjct: 383 AEMIAKGCPPD 393



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 76/169 (44%), Gaps = 10/169 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++ H MR +     A+    + + L K     EA +L  ++      PD + +  ++E  
Sbjct: 66  KLLHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMARYAP-PDALTYGPIVERL 124

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               +  +AL     M   G+ P+A+ Y  ++ GL        + + +A+    +MV + 
Sbjct: 125 CKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLC-----QEEKVEEARLLFEKMVKQR 179

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           + PN  TY  +     +A +++ A  L ++M  KG+VP E +    LID
Sbjct: 180 INPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSY-NTLID 227



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 69/166 (41%), Gaps = 9/166 (5%)

Query: 79  HKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASA 135
            +M T G+  +A     +   L ++    EA  LF ++  +   P+VV +  +I     A
Sbjct: 138 EEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKA 197

Query: 136 GQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP 195
            + + A  +F  M   G  P   +Y  LI G     D     L  A+    +MV     P
Sbjct: 198 WRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKD-----LVAAKDVFDKMVRSNCVP 252

Query: 196 NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           N  TYT + +   ++ KV  A  +L  M  KG  P+  A    LID
Sbjct: 253 NVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPN-VATYSCLID 297



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K     +AL    ++  +G  PD   +  V+       + +EA  +F +M+   
Sbjct: 120 IVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQR 179

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN  TY  LI GL  A       +  A +   EM GKG  P   +Y  + + F + + 
Sbjct: 180 INPNVVTYNTLINGLCKAWR-----IETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKD 234

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +  A+ +  +M     VP+
Sbjct: 235 LVAAKDVFDKMVRSNCVPN 253



 Score = 43.9 bits (102), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 12/118 (10%)

Query: 58  DPFKKV--VDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQ 112
           D F KV  VDE         ++  +M T+G+    V    + ++L +     +A +LF  
Sbjct: 297 DGFCKVRRVDEA-------HKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRG 349

Query: 113 IKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAA 170
           +  +   P VV +  ++ A     Q   A R++  M+A G  P+A TY  L  GL  A
Sbjct: 350 MAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRA 407



 Score = 42.0 bits (97), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 5/105 (4%)

Query: 119 MPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKIL 178
           +P       V + +A AG+ ++   V+  M+ +G    A  Y +LI  L     GN    
Sbjct: 7   IPGAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKV--GN---F 61

Query: 179 GDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
            +A K L  M  K  +  A  Y+ +     +  +V+EAR L+++M
Sbjct: 62  DEAYKLLHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKM 106


>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g05670, mitochondrial; Flags: Precursor
 gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
 gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
          Length = 741

 Score = 87.0 bits (214), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/165 (30%), Positives = 80/165 (48%), Gaps = 8/165 (4%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D R   + F++M +  +T + +    +     + G   EA +LF ++  KG  PD V  T
Sbjct: 366 DIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFT 425

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
            +I  Y  AG  K+A RV   M+ +G +PN  TY  LI GL    D     L  A + L 
Sbjct: 426 ELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGD-----LDSANELLH 480

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           EM   G++PN  TY ++     ++  ++EA  L+ + +A G   D
Sbjct: 481 EMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNAD 525



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 80/168 (47%), Gaps = 8/168 (4%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D  +  E+ H+M   GL  N      + + L K G   EA++L  + +  G   D V +T
Sbjct: 471 DLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYT 530

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
            +++AY  +G+  +A  +   ML  G+ P   T+ VL+ G          +L D +K L 
Sbjct: 531 TLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHG-----MLEDGEKLLN 585

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
            M+ KG+ PNA T+ ++ + +     +  A  + + M ++G  PD K 
Sbjct: 586 WMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKT 633



 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E F +M  +G+  + V    + D   K G    A + F ++  +   PDV+ +TA+I  
Sbjct: 336 EEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISG 395

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +   G   EA ++F  M   G+ P++ T+  LI G   A  G+ K   DA +    M+  
Sbjct: 396 FCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKA--GHMK---DAFRVHNHMIQA 450

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G  PN  TYT + +   +   +D A  LL +M   G  P+
Sbjct: 451 GCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPN 490



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 81/177 (45%), Gaps = 9/177 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           QEI  +M  +GL    V    + +     G+  +  +L   +  KG  P+     ++++ 
Sbjct: 546 QEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQ 605

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y      K A  ++  M + GV P+  TY  L+KG   A +     + +A     EM GK
Sbjct: 606 YCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARN-----MKEAWFLFQEMKGK 660

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFR 248
           G   +  TY+ + + F++ +K  EAR +  QM+ +G   D K + +   D + +G R
Sbjct: 661 GFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAAD-KEIFDFFSDTKYKGKR 716



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 5/131 (3%)

Query: 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
           G   EA  L   ++ KG+ PDV++++ V+  Y   G+  +  ++   M   G+ PN+Y Y
Sbjct: 260 GRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIY 319

Query: 161 AVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
             +I  L          L +A++   EM+ +G+ P+   YT + + F +   +  A    
Sbjct: 320 GSIIGLLCRICK-----LAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFF 374

Query: 221 QQMKAKGFVPD 231
            +M ++   PD
Sbjct: 375 YEMHSRDITPD 385



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 74/158 (46%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           + + M   G + N V    + D L K+G    A +L  ++   G  P++  + +++    
Sbjct: 443 VHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLC 502

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            +G  +EA+++     A+G+  +  TY  L+     + +     +  AQ+ L EM+GKG+
Sbjct: 503 KSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGE-----MDKAQEILKEMLGKGL 557

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +P   T+  +   F     +++   LL  M AKG  P+
Sbjct: 558 QPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPN 595



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 62/127 (48%), Gaps = 5/127 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA + F+++  +G +PD V +T +I+ +   G  + A + F  M +  + P+  TY  +I
Sbjct: 334 EAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAII 393

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            G     D     + +A K   EM  KG+ P++ T+T +   + +A  + +A  +   M 
Sbjct: 394 SGFCQIGD-----MVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMI 448

Query: 225 AKGFVPD 231
             G  P+
Sbjct: 449 QAGCSPN 455


>gi|449458524|ref|XP_004146997.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Cucumis sativus]
          Length = 481

 Score = 87.0 bits (214), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 84/169 (49%), Gaps = 2/169 (1%)

Query: 88  NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMR 147
           N  +K    L K G   EA ++F ++K +G +P+V+++++++  +  AG+ +E+ R+F  
Sbjct: 164 NTLIKGLYGLCKVGHEDEAKEIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNE 223

Query: 148 MLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAF 207
           M+  GV PN   + VLI  L    +G    L  A+K  + M  KG   N  +YT +   +
Sbjct: 224 MVDQGVQPNLVQFNVLIDIL--CKEGKIGDLSSARKLFLSMPSKGCEHNEISYTILINGY 281

Query: 208 VRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFG 256
            +  KV+EA  L  +M   G  P+ K     L      G  G  N LFG
Sbjct: 282 CKIWKVEEAMNLYNEMPQVGKRPNVKTYSTLLTGLLQTGKVGDANKLFG 330



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 74/153 (48%), Gaps = 7/153 (4%)

Query: 75  QEIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            ++F  M+  G++ ++   V   D L K+G+  EA++LF ++K      D  +++ +I+ 
Sbjct: 326 NKLFGVMKASGISVDSCIYVIFLDGLCKNGVLFEAMELFNELKSYNFKLDFESYSRLIDG 385

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN-AKILGDAQKYLMEMVG 190
              AG+ + A   F ++   G+ PN  T  ++I G       + A IL +  + + E   
Sbjct: 386 LCKAGKVEIAWEFFKQLSQEGLQPNVVTCNIMIHGFCRVEQVDKANILFEKMEKMEE--- 442

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
            G  P+  TY  +   F  + K++E   LL +M
Sbjct: 443 NGCTPDIITYNTLLRGFCESNKLEEVVNLLHKM 475



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 64/140 (45%), Gaps = 2/140 (1%)

Query: 92  KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
           ++   L+K     +   L+ +++  G  PD+     +     +  +  E L     +L  
Sbjct: 95  RLLGGLAKINHYSQLFSLYNKMRLAGLSPDLFTLNILANCLCNLNRVSEGLAAMTGILRR 154

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           G  P+  TY  LIKGL        +   +A++   EM  +GM PN  +Y+++   F  A 
Sbjct: 155 GYIPDIVTYNTLIKGLYGLCKVGHE--DEAKEIFEEMKAQGMIPNVISYSSLVHGFCCAG 212

Query: 212 KVDEARGLLQQMKAKGFVPD 231
           K++E++ L  +M  +G  P+
Sbjct: 213 KLEESKRLFNEMVDQGVQPN 232



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/165 (20%), Positives = 78/165 (47%), Gaps = 8/165 (4%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D  + +++F  M ++G  +N +    + +   K     EA+ L+ ++   G  P+V  ++
Sbjct: 251 DLSSARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEMPQVGKRPNVKTYS 310

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
            ++      G+  +A ++F  M ASG++ ++  Y + + GL         +L +A +   
Sbjct: 311 TLLTGLLQTGKVGDANKLFGVMKASGISVDSCIYVIFLDGLCKNG-----VLFEAMELFN 365

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           E+     + +  +Y+ + +   +A KV+ A    +Q+  +G  P+
Sbjct: 366 ELKSYNFKLDFESYSRLIDGLCKAGKVEIAWEFFKQLSQEGLQPN 410


>gi|357500061|ref|XP_003620319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495334|gb|AES76537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 496

 Score = 87.0 bits (214), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 11/172 (6%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M    +  N V    + D L K G    AL+L  ++ D+G  PD++ ++++++A  
Sbjct: 311 LFEEMHCRKIIPNVVTYNSLIDGLCKSGKISYALKLVDEMHDRGQPPDIITYSSLLDALC 370

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
               G +A+ +  ++   G+ PN YTY +LI GL            DAQ    +++ KG 
Sbjct: 371 KNHPGDKAIALLTKLKDQGLQPNMYTYTILINGLCKGGRPE-----DAQNIFEDLLVKGY 425

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE---KAVKEALIDK 242
             N  TYT +   F       EA  +L +M+  G +P+    + +  +L DK
Sbjct: 426 NINVNTYTVMIHVFCNNGMFGEALAMLSKMEENGCIPNAVTYEIIIRSLFDK 477



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 101/240 (42%), Gaps = 23/240 (9%)

Query: 1   MAATAILRWLLHSPSPKRSLRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPF 60
           +  T+ L   +HSP         +T   + + +  S  S   + K   T  K  PP +P 
Sbjct: 133 LFGTSCLNKFIHSPK-------NDTLPLSEMPQIPSHFSSFDSFKSTGTSPKNDPPQEPE 185

Query: 61  KKVVDE-----EPT----DPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFA 111
             V+       E T    D  NL+E F     + L    +       K+G   EA  +FA
Sbjct: 186 NSVISNGMLFAEVTSLRGDVNNLRECFVSFMFQYL--GMMAPVSTFCKEGKVKEAKNVFA 243

Query: 112 QIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA 171
            +  KG  P+VV ++++++ Y    +  +A  +F  M   GV P+  +Y +LI G     
Sbjct: 244 AMMKKGFKPNVVTYSSLMDGYCLVKEVNKAKSIFNNMAQGGVNPDIQSYNILINGFCK-- 301

Query: 172 DGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
               K+   A     EM  + + PN  TY ++ +   ++ K+  A  L+ +M  +G  PD
Sbjct: 302 ---IKMTDAAMNLFEEMHCRKIIPNVVTYNSLIDGLCKSGKISYALKLVDEMHDRGQPPD 358


>gi|224133106|ref|XP_002327962.1| predicted protein [Populus trichocarpa]
 gi|222837371|gb|EEE75750.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score = 86.7 bits (213), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 74/139 (53%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L KD L  EAL +F++IK KG  PDV  ++ ++    ++ Q +EA  +F  M++  
Sbjct: 230 IIDGLCKDRLVSEALDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLN 289

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+  T+ +L+  L         +L +AQ  +  M+ KG+ PN  TY ++   +    K
Sbjct: 290 IMPDVVTFNILVDKLCKEG-----MLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNK 344

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V EAR +   M  KG +P+
Sbjct: 345 VFEARMVFDAMITKGCMPN 363



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 77/158 (48%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F++M +  +  + V    + D L K+G+  EA  +   + +KG  P+   + +++  Y 
Sbjct: 281 LFNEMMSLNIMPDVVTFNILVDKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYC 340

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
              +  EA  VF  M+  G  PN  +Y +LI G        A+ + +A++   EM  +G+
Sbjct: 341 LQNKVFEARMVFDAMITKGCMPNVVSYNILINGYC-----KAQRIDEARELFDEMSFRGL 395

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            PN   Y  +     +A +  EAR L + M+A+G  PD
Sbjct: 396 IPNTFNYNTLISGLCQAGRHCEARELFKDMQAQGCSPD 433



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 5/127 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA  +F  +  KG MP+VV++  +I  Y  A +  EA  +F  M   G+ PN + Y  LI
Sbjct: 347 EARMVFDAMITKGCMPNVVSYNILINGYCKAQRIDEARELFDEMSFRGLIPNTFNYNTLI 406

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            GL  A         +A++   +M  +G  P+  T T + ++  +   +D A  L + M+
Sbjct: 407 SGLCQAGRH-----CEARELFKDMQAQGCSPDLVTCTILLDSLCKLGYLDNALRLFRAMQ 461

Query: 225 AKGFVPD 231
                P+
Sbjct: 462 DSCLKPN 468



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 76/190 (40%), Gaps = 42/190 (22%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A  +  +I   G  PD V  +++I       +   A+  F  M+ASG  PN +TY  +IK
Sbjct: 138 AFSVLGKIIKLGFEPDAVTFSSLINGLCFEDKFARAMEFFDEMVASGYQPNLHTYNTIIK 197

Query: 166 GLA----------------------------AAADGNAK--ILGDAQKYLMEMVGKGMRP 195
           G                                 DG  K  ++ +A     E+ GKG+RP
Sbjct: 198 GFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCKDRLVSEALDIFSEIKGKGVRP 257

Query: 196 NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD--------EKAVKEALIDKRGQGF 247
           +  TY+ +      + + +EA  L  +M +   +PD        +K  KE ++ +     
Sbjct: 258 DVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFNILVDKLCKEGMLSEA---- 313

Query: 248 RGVINILFGK 257
           +G+I I+  K
Sbjct: 314 QGIIKIMIEK 323



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 3/96 (3%)

Query: 75  QEIFHKMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+F +M   GL   T N   +   L + G   EA +LF  ++ +G  PD+V  T ++++
Sbjct: 384 RELFDEMSFRGLIPNTFNYNTLISGLCQAGRHCEARELFKDMQAQGCSPDLVTCTILLDS 443

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
               G    ALR+F  M  S + PN  TY +LI+ +
Sbjct: 444 LCKLGYLDNALRLFRAMQDSCLKPNLVTYDILIRAM 479


>gi|125548275|gb|EAY94097.1| hypothetical protein OsI_15870 [Oryza sativa Indica Group]
          Length = 554

 Score = 86.7 bits (213), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 80/164 (48%), Gaps = 9/164 (5%)

Query: 72  RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           +++ E F +M   G   N V      D L K     +A  +  ++  +G  P+V  HT +
Sbjct: 225 KDVSEFFRRMLEMGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTL 284

Query: 129 IEAYASAGQGKEALRVFMRML-ASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           I+     G  + A R+F++++ +S   PN +TY V+I G           L  A+  L+ 
Sbjct: 285 IDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGK-----LARAEMLLVR 339

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           MV +G++PN  TYT +     +    D A  L+ +MK +GF+P+
Sbjct: 340 MVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPN 383



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 71/162 (43%), Gaps = 11/162 (6%)

Query: 75  QEIFHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           +++F  M   G+  +  + F AL     ++G   E   L A +   G   D    T V+ 
Sbjct: 158 RKVFDGMTRAGVCPDE-RSFRALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVR 216

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
           +    G+ K+    F RML  G  PN   Y   I GL        + +  A   L EMVG
Sbjct: 217 SLCEKGRFKDVSEFFRRMLEMGTPPNVVNYTAWIDGLC-----KRRYVKQAFHVLEEMVG 271

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEA-RGLLQQMKAKGFVPD 231
           +G++PN  T+T + +   +    + A R  L+ +K+  + P+
Sbjct: 272 RGLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPN 313



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 70/161 (43%), Gaps = 12/161 (7%)

Query: 76  EIFHKMRTEGL-----TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           E+ +KM+ EG      T NAV   D   K G   EA ++      +G   D + +T +I 
Sbjct: 370 ELMNKMKQEGFLPNIYTYNAV--IDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILIT 427

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
            +   G    AL +F RM+ +G  P+   Y  LI           + + ++QK+  + + 
Sbjct: 428 EHCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYC-----QQRQMEESQKFFDKCLM 482

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            G+ P   TYT++   + +  +   A  + ++M   G   D
Sbjct: 483 IGLLPTKQTYTSMIAGYCKVGRSTMALRVFERMVQNGCFAD 523



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 72/157 (45%), Gaps = 8/157 (5%)

Query: 80  KMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           +M  +GL   TN    +     K G    A +L  ++K +G +P++  + AVI+ +   G
Sbjct: 339 RMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKG 398

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196
           + +EA +V     + G+  +  TY +LI        G+   +  A      MV  G  P+
Sbjct: 399 KIQEAYKVLRMATSQGLKFDKITYTILIT--EHCKQGH---ITYALDLFDRMVENGCCPD 453

Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK 233
              YT++   + + ++++E++    +    G +P ++
Sbjct: 454 IEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQ 490



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/142 (23%), Positives = 57/142 (40%), Gaps = 5/142 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M     ++G    A  L  ++ ++G  P+   +T +I  +   G    A  +  +M   G
Sbjct: 320 MIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEG 379

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN YTY  +I G           + +A K L     +G++ +  TYT +     +   
Sbjct: 380 FLPNIYTYNAVIDGFCKKGK-----IQEAYKVLRMATSQGLKFDKITYTILITEHCKQGH 434

Query: 213 VDEARGLLQQMKAKGFVPDEKA 234
           +  A  L  +M   G  PD +A
Sbjct: 435 ITYALDLFDRMVENGCCPDIEA 456


>gi|410109923|gb|AFV61041.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           hederifolia]
          Length = 431

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 114/237 (48%), Gaps = 15/237 (6%)

Query: 2   AATAILRWLLHSPSPKRS-LRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPF 60
           +A+A+   +L +   +RS + + +  + A L+      + +  +  +  + KL  P+D  
Sbjct: 53  SASAVFATILETKGTQRSDIYVLSGLITAYLESGFLRDAIECYR--LTREHKLWVPFDTC 110

Query: 61  KKVVDEEPTDPRNLQEI--FHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIK 114
           +KV+ E     +  + +  F++   E     ++  F+ L     KDG    A  +F  I 
Sbjct: 111 RKVL-EHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAIT 169

Query: 115 DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174
             G  P VV++  ++  Y   G   E  R+   MLASGV P+ YTY+VLI GL   +   
Sbjct: 170 KWGLRPSVVSYNTLMNGYIRLGDLNEGFRLKSAMLASGVQPDVYTYSVLINGLCKESK-- 227

Query: 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              + DA +   EM+ KG+ PN  T+T + +   +  +VD A  + +QM ++  +PD
Sbjct: 228 ---MDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQCLLPD 281



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 86/201 (42%), Gaps = 35/201 (17%)

Query: 63  VVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM 119
           +  E   D  N  E+F +M  +GL  N V    + D   K+G    A++++ Q+  +  +
Sbjct: 222 LCKESKMDDAN--ELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQCLL 279

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN----- 174
           PD++ +  +I      G  K+A  +   M   G+ P+ +TY  LI G     D +     
Sbjct: 280 PDLITYNTLIYGLXKKGDLKQAHDLIDEMSMKGLKPDKFTYXTLIDGCCKEGDLDTAFEH 339

Query: 175 -----------------AKILG--------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
                            A I G        DA+K L EM+  G++P+  TYT +   F +
Sbjct: 340 RKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDDRTYTMIINEFCK 399

Query: 210 AQKVDEARGLLQQMKAKGFVP 230
              V +   LL++M+  G VP
Sbjct: 400 KGDVWKGSKLLKEMQRDGHVP 420


>gi|356523854|ref|XP_003530549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g16890, mitochondrial-like [Glycine max]
          Length = 678

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 81/173 (46%), Gaps = 11/173 (6%)

Query: 73  NLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           N  E F  M+  G+  N V    + +   KDG   +A +L   + + G  PD+   ++++
Sbjct: 447 NASEAFRDMQVRGVVPNLVTFNTLINGHCKDGAIDKARKLLESLLENGLKPDIFTFSSIV 506

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
           +      + +EAL  F  M+  G+ PNA  Y +LI+ L    D     +  + K L  M 
Sbjct: 507 DGLCQIKRTEEALECFTEMIEWGINPNAVIYNILIRSLCTIGD-----VARSVKLLRRMQ 561

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE---KAVKEAL 239
            +G+ P+  +Y A+ + F R  KV++A+ L   M   G  PD     A  EAL
Sbjct: 562 KEGISPDTYSYNALIQIFCRMNKVEKAKKLFDSMSRSGLNPDNYTYSAFIEAL 614



 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 65/136 (47%), Gaps = 5/136 (3%)

Query: 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
           GL + +  +F QI   G  P    + A+I+A   +     A   F +M A     + +TY
Sbjct: 158 GLANYSAHVFCQISFLGLSPTTRLYNALIDALVKSNSIDLAYLKFQQMAADNCVADRFTY 217

Query: 161 AVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
             LI G+         ++ +A + + +M  KG  PN  TYT + E F  A +VDEA G+ 
Sbjct: 218 NTLIHGVCKVG-----VVDEALRLVRQMKDKGHFPNVFTYTMLIEGFCIASRVDEAFGVF 272

Query: 221 QQMKAKGFVPDEKAVK 236
           + MK  G  P+E  V+
Sbjct: 273 ETMKDSGVYPNEATVR 288



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 88/180 (48%), Gaps = 10/180 (5%)

Query: 53  LPPPYDPFKKVVDEEPTDPRNLQ--EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEAL 107
           L P    F  +VD      R  +  E F +M   G+  NAV    +  +L   G    ++
Sbjct: 495 LKPDIFTFSSIVDGLCQIKRTEEALECFTEMIEWGINPNAVIYNILIRSLCTIGDVARSV 554

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
           +L  +++ +G  PD  ++ A+I+ +    + ++A ++F  M  SG+ P+ YTY+  I+ L
Sbjct: 555 KLLRRMQKEGISPDTYSYNALIQIFCRMNKVEKAKKLFDSMSRSGLNPDNYTYSAFIEAL 614

Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
           + +       L +A+K    M   G  P++     + +  V+ + V+EA+ ++++ + KG
Sbjct: 615 SESGR-----LEEAKKMFYSMEANGCSPDSYICNLIIKILVQQEYVEEAQNIIERCRQKG 669



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 44/80 (55%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   + K G+  EAL+L  Q+KDKGH P+V  +T +IE +  A +  EA  VF  M  SG
Sbjct: 220 LIHGVCKVGVVDEALRLVRQMKDKGHFPNVFTYTMLIEGFCIASRVDEAFGVFETMKDSG 279

Query: 153 VAPNAYTYAVLIKGLAAAAD 172
           V PN  T   L+ G+    D
Sbjct: 280 VYPNEATVRALVHGVFRCVD 299



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 64/136 (47%), Gaps = 5/136 (3%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K     E   +F  ++ +G    + A+ A+IE        +E  RV+ ++++ G+  
Sbjct: 368 CLVKGAELRETCDVFEILRKQGVKAGIGAYLALIEVLYKNEWREEGDRVYGQLISDGLIS 427

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           N ++Y ++I          AK++ +A +   +M  +G+ PN  T+  +     +   +D+
Sbjct: 428 NVFSYNMIINCFC-----RAKLMDNASEAFRDMQVRGVVPNLVTFNTLINGHCKDGAIDK 482

Query: 216 ARGLLQQMKAKGFVPD 231
           AR LL+ +   G  PD
Sbjct: 483 ARKLLESLLENGLKPD 498



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 67/128 (52%), Gaps = 14/128 (10%)

Query: 76  EIFHKMRTEGLT------NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           ++  +M+ EG++      N  +++F  ++K     +A +LF  +   G  PD   ++A I
Sbjct: 555 KLLRRMQKEGISPDTYSYNALIQIFCRMNK---VEKAKKLFDSMSRSGLNPDNYTYSAFI 611

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
           EA + +G+ +EA ++F  M A+G +P++Y   ++IK L        + + +AQ  +    
Sbjct: 612 EALSESGRLEEAKKMFYSMEANGCSPDSYICNLIIKILV-----QQEYVEEAQNIIERCR 666

Query: 190 GKGMRPNA 197
            KG+  N+
Sbjct: 667 QKGISLNS 674



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 52/131 (39%), Gaps = 5/131 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DAL K      A   F Q+     + D   +  +I      G   EALR+  +M   G
Sbjct: 185 LIDALVKSNSIDLAYLKFQQMAADNCVADRFTYNTLIHGVCKVGVVDEALRLVRQMKDKG 244

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN +TY +LI+G   A+      + +A      M   G+ PN  T  A+     R   
Sbjct: 245 HFPNVFTYTMLIEGFCIASR-----VDEAFGVFETMKDSGVYPNEATVRALVHGVFRCVD 299

Query: 213 VDEARGLLQQM 223
             +A  LL + 
Sbjct: 300 PSKALELLSEF 310


>gi|115475535|ref|NP_001061364.1| Os08g0248400 [Oryza sativa Japonica Group]
 gi|113623333|dbj|BAF23278.1| Os08g0248400, partial [Oryza sativa Japonica Group]
          Length = 440

 Score = 86.7 bits (213), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 88/184 (47%), Gaps = 10/184 (5%)

Query: 53  LPPPYDPFKKVVDE--EPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEAL 107
            PP    +  ++D   +  D       +H+M   G+  + V    +  AL K     +A+
Sbjct: 202 CPPDVVSYSTIIDGLFKEGDSDKAYSTYHEMLERGILPDVVTYNTIVAALCKAQAMDKAM 261

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
            +  ++   G MPD + + +++  Y S+GQ KEA+ +  +M + GV P+A TY  L+  L
Sbjct: 262 DVLNRMVKNGVMPDCITYNSIVHGYCSSGQSKEAIGILEKMCSDGVEPDAVTYTSLMDYL 321

Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
                 N + + +A+K L  M+ +G++PN  TY+ +   +     + E R LL  M   G
Sbjct: 322 CK----NGRCI-EARKILDSMIKRGLKPNVITYSTLLHGYATKGALVEMRDLLDLMVRNG 376

Query: 228 FVPD 231
             PD
Sbjct: 377 IQPD 380



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 71/143 (49%), Gaps = 8/143 (5%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           I  KM ++G+  +AV    + D L K+G   EA ++   +  +G  P+V+ ++ ++  YA
Sbjct: 298 ILEKMCSDGVEPDAVTYTSLMDYLCKNGRCIEARKILDSMIKRGLKPNVITYSTLLHGYA 357

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
           + G   E   +   M+ +G+ P+ + +++LI   A     N  +   A     +M  + +
Sbjct: 358 TKGALVEMRDLLDLMVRNGIQPDRHVFSILI--CACTKHQNVDV---AMFVFSKMRQQRL 412

Query: 194 RPNAGTYTAVFEAFVRAQKVDEA 216
            P+  TY  + +   ++ +VD+A
Sbjct: 413 TPDVVTYGTLIDGLCKSGRVDDA 435



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 69/155 (44%), Gaps = 33/155 (21%)

Query: 110 FAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMR-MLASGVAPNAYTYAVLIKGLA 168
              +  KG+  + +  T ++++  +  +   A+ + +R M   G AP+ ++Y +L+KGL 
Sbjct: 121 LGNVIKKGYRVEPIIFTPLLKSLCAEKRTSNAMNIVLRRMTELGCAPHVFSYNILLKGLC 180

Query: 169 --------------AAADGN---------AKIL------GDAQK---YLMEMVGKGMRPN 196
                          A DG          + I+      GD+ K      EM+ +G+ P+
Sbjct: 181 HESRSQEALELLHMMADDGGDCPPDVVSYSTIIDGLFKEGDSDKAYSTYHEMLERGILPD 240

Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             TY  +  A  +AQ +D+A  +L +M   G +PD
Sbjct: 241 VVTYNTIVAALCKAQAMDKAMDVLNRMVKNGVMPD 275


>gi|356561679|ref|XP_003549107.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g12775, mitochondrial-like [Glycine max]
          Length = 750

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 72  RNLQEIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           +N + +F+ M   G+T N      M D L K+ +  EA+ LF ++K K  +PD+V +T++
Sbjct: 325 KNAKYVFYSMAQSGVTPNVRTYTTMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSL 384

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I+        + A+ +  +M   G+ P+ Y+Y +L+  L          L +A+++   +
Sbjct: 385 IDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGR-----LENAKEFFQRL 439

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE---KAVKEALIDK 242
           + KG   N  TY  +     +A    EA  L  +M+ KG +PD    K +  AL +K
Sbjct: 440 LVKGYHLNVQTYNVMINGLCKADLFGEAMDLKSKMEGKGCMPDAITFKTIICALFEK 496



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 91/190 (47%), Gaps = 10/190 (5%)

Query: 47  VNTKSKLPPPYDPFKKVVDEE--PTDPRNLQEIFHKMRTEGLTNNA---VKMFDALSKDG 101
           V TK+ + P    +  ++D      + ++ + +F+ M   G+T N      M D L K  
Sbjct: 531 VMTKACIKPDVVTYGTLMDGYFLVNELKHAKYVFYSMAQMGVTPNVQCYTIMIDGLCKKK 590

Query: 102 LTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYA 161
              EA+ LF ++K K   P++V +T++I+A       + A+ +   M   G+ P+ Y+Y 
Sbjct: 591 TVDEAMSLFEEMKHKNMFPNIVTYTSLIDALCKNHHLERAIALLKEMKEHGIQPDVYSYT 650

Query: 162 VLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221
           +L+ GL  +       L  A++    ++ KG   N   YTA+     +A   DEA  L  
Sbjct: 651 ILLDGLCKSGR-----LEGAKEIFQRLLVKGYHLNVQVYTAMINELCKAGLFDEALDLQX 705

Query: 222 QMKAKGFVPD 231
           +M+ KG +PD
Sbjct: 706 KMEDKGCMPD 715



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 75/156 (48%), Gaps = 6/156 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DAL K+G    A  + A +      PDVV + ++I+ Y    + K A  VF  M  SG
Sbjct: 279 LIDALGKEGKMKAAKIVLAVMMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSG 338

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V PN  TY  +I GL        K++ +A     EM  K M P+  TYT++ +   +   
Sbjct: 339 VTPNVRTYTTMIDGLC-----KEKMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHH 393

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFR 248
           ++ A  L ++MK +G  PD  +    L+D   +G R
Sbjct: 394 LERAIALCKKMKEQGIQPDVYSY-TILLDALCKGGR 428



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 10/160 (6%)

Query: 76  EIFHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +++ +M  +G++ N V  ++AL       G   EA  L  ++K K   PDV     +I+A
Sbjct: 224 DLYSEMIVKGISPNVVT-YNALVYGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNTLIDA 282

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G+ K A  V   M+ + + P+  TY  LI G           + +A+     M   
Sbjct: 283 LGKEGKMKAAKIVLAVMMKACIKPDVVTYNSLIDGYFFLNK-----VKNAKYVFYSMAQS 337

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G+ PN  TYT + +   + + VDEA  L ++MK K  +PD
Sbjct: 338 GVTPNVRTYTTMIDGLCKEKMVDEAMSLFEEMKYKNMIPD 377



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 81/174 (46%), Gaps = 15/174 (8%)

Query: 61  KKVVDEEPTDPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKG 117
           KK VDE          +F +M+ + +  N V    + DAL K+     A+ L  ++K+ G
Sbjct: 589 KKTVDEA-------MSLFEEMKHKNMFPNIVTYTSLIDALCKNHHLERAIALLKEMKEHG 641

Query: 118 HMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKI 177
             PDV ++T +++    +G+ + A  +F R+L  G   N   Y  +I  L  A      +
Sbjct: 642 IQPDVYSYTILLDGLCKSGRLEGAKEIFQRLLVKGYHLNVQVYTAMINELCKAG-----L 696

Query: 178 LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             +A     +M  KG  P+A T+  +  A     + D+A  +L +M A+G + +
Sbjct: 697 FDEALDLQXKMEDKGCMPDAVTFDIIIWALFEKDENDKAEKILXEMIARGLMKE 750



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 89/227 (39%), Gaps = 36/227 (15%)

Query: 54  PPPYDPFKKVVDEEPTDPR--NLQEIFHKMRTEGLTNNAVKMFDALSK-DGLTH--EALQ 108
           PPP   F  ++     +     +  +F K  + G T +   +   ++    LTH   A  
Sbjct: 60  PPPTFHFNYILSSLVNNKHYPTVISLFKKFESNGATPDLCTLNILMNCFCHLTHITFAFS 119

Query: 109 LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
           + A I  +G+ P+ +    +I+     G+ K+AL    +++A G   N  +Y  LI GL 
Sbjct: 120 VLANILKRGYHPNAITLNTLIKGLCFRGEIKKALYFHDQVVAQGFQLNQVSYRTLINGLC 179

Query: 169 AAADGNA------------------------------KILGDAQKYLMEMVGKGMRPNAG 198
              +  A                              K+LGDA     EM+ KG+ PN  
Sbjct: 180 KTGETKAVARLLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDACDLYSEMIVKGISPNVV 239

Query: 199 TYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
           TY A+   F     + EA  LL +MK K   PD       LID  G+
Sbjct: 240 TYNALVYGFCIMGHLKEAFSLLNEMKLKNINPD-VCTFNTLIDALGK 285



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 75/186 (40%), Gaps = 31/186 (16%)

Query: 72  RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
            N +E F ++  +G   N      M + L K  L  EA+ L ++++ KG MPD +    +
Sbjct: 430 ENAKEFFQRLLVKGYHLNVQTYNVMINGLCKADLFGEAMDLKSKMEGKGCMPDAITFKTI 489

Query: 129 IEAYASAGQGKEALRVFMRMLASG-----------------------VAPNAYTYAVLIK 165
           I A     +  +A ++   M+A G                       + P+  TY  L+ 
Sbjct: 490 ICALFEKDENDKAEKILREMIARGLQEARKVRLKEAKIVLAVMTKACIKPDVVTYGTLMD 549

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G     +     L  A+     M   G+ PN   YT + +   + + VDEA  L ++MK 
Sbjct: 550 GYFLVNE-----LKHAKYVFYSMAQMGVTPNVQCYTIMIDGLCKKKTVDEAMSLFEEMKH 604

Query: 226 KGFVPD 231
           K   P+
Sbjct: 605 KNMFPN 610



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 72/168 (42%), Gaps = 10/168 (5%)

Query: 78  FH-KMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           FH ++  +G   N V    + + L K G T    +L  +++     PDVV +  +I +  
Sbjct: 155 FHDQVVAQGFQLNQVSYRTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIIHSLC 214

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
                 +A  ++  M+  G++PN  TY  L+ G           L +A   L EM  K +
Sbjct: 215 KNKLLGDACDLYSEMIVKGISPNVVTYNALVYGFCIMGH-----LKEAFSLLNEMKLKNI 269

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
            P+  T+  + +A  +  K+  A+ +L  M      PD      +LID
Sbjct: 270 NPDVCTFNTLIDALGKEGKMKAAKIVLAVMMKACIKPD-VVTYNSLID 316


>gi|79317869|ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12775, mitochondrial; Flags: Precursor
 gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from
           Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
           multiple PPR PF|01535 repeats. EST gb|AI999079 comes
           from this gene [Arabidopsis thaliana]
 gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 644

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 82/159 (51%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+  KM    +  +AVK   + D L KDG    A  LF +++ KG   D++ +  +I  +
Sbjct: 249 ELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGF 308

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
            +AG+  +  ++   M+   ++PN  T++VLI             L +A + L EM+ +G
Sbjct: 309 CNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGK-----LREADQLLKEMMQRG 363

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + PN  TY ++ + F +  +++EA  ++  M +KG  PD
Sbjct: 364 IAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPD 402



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 72/139 (51%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D+  K+G   EA QL  ++  +G  P+ + + ++I+ +    + +EA+++   M++ G
Sbjct: 339 LIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKG 398

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  T+ +LI G   A       + D  +   EM  +G+  N  TY  + + F ++ K
Sbjct: 399 CDPDIMTFNILINGYCKANR-----IDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGK 453

Query: 213 VDEARGLLQQMKAKGFVPD 231
           ++ A+ L Q+M ++   PD
Sbjct: 454 LEVAKKLFQEMVSRRVRPD 472



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 74/160 (46%), Gaps = 8/160 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F +M   G+  N V    +     + G    A +LF ++  +   PD+V++  +++  
Sbjct: 424 ELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGL 483

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+ ++AL +F ++  S +  +   Y ++I G+      NA  + DA      +  KG
Sbjct: 484 CDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMC-----NASKVDDAWDLFCSLPLKG 538

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           ++ +A  Y  +     R   + +A  L ++M  +G  PDE
Sbjct: 539 VKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDE 578



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 73/169 (43%), Gaps = 30/169 (17%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L  +G   +A+ L  ++ + G  P+ V +  V+     +GQ   A+ +  +M    
Sbjct: 199 LVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERN 258

Query: 153 VAPNAYTYAVLIKGLAA-------------------AAD-----------GNAKILGDAQ 182
           +  +A  Y+++I GL                      AD            NA    D  
Sbjct: 259 IKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGA 318

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           K L +M+ + + PN  T++ + ++FV+  K+ EA  LL++M  +G  P+
Sbjct: 319 KLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPN 367



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/139 (22%), Positives = 66/139 (47%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L  +    EAL+L  ++ + GH P ++    ++      G+  +A+ +  RM+ +G
Sbjct: 164 LLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETG 223

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN  TY  ++  +  +  G   +   A + L +M  + ++ +A  Y+ + +   +   
Sbjct: 224 FQPNEVTYGPVLNVMCKS--GQTAL---AMELLRKMEERNIKLDAVKYSIIIDGLCKDGS 278

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +D A  L  +M+ KGF  D
Sbjct: 279 LDNAFNLFNEMEIKGFKAD 297



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 62/144 (43%), Gaps = 5/144 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L  +G   +AL++F +I+      D+  +  +I    +A +  +A  +F  +   G
Sbjct: 479 LLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKG 538

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V  +A  Y ++I  L          L  A     +M  +G  P+  TY  +  A +    
Sbjct: 539 VKLDARAYNIMISELCRKDS-----LSKADILFRKMTEEGHAPDELTYNILIRAHLGDDD 593

Query: 213 VDEARGLLQQMKAKGFVPDEKAVK 236
              A  L+++MK+ GF  D   VK
Sbjct: 594 ATTAAELIEEMKSSGFPADVSTVK 617



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 58/135 (42%), Gaps = 7/135 (5%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A     +I   G+ PD V    ++       +  EAL +  RM+  G  P   T   L+ 
Sbjct: 142 AFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVN 201

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           GL      N K+  DA   +  MV  G +PN  TY  V     ++ +   A  LL++M+ 
Sbjct: 202 GLCL----NGKV-SDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEE 256

Query: 226 KGFVPDEKAVKEALI 240
           +    D  AVK ++I
Sbjct: 257 RNIKLD--AVKYSII 269


>gi|242069107|ref|XP_002449830.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
 gi|241935673|gb|EES08818.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
          Length = 676

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 81/164 (49%), Gaps = 9/164 (5%)

Query: 72  RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R++  +F +M   G   N V      D L K G   +A  +  ++  KG  P+V  HT++
Sbjct: 233 RDVPGLFGRMVEMGNPPNVVNYTAWVDGLCKRGYVKQAFHVLEEMVGKGLKPNVYTHTSL 292

Query: 129 IEAYASAGQGKEALRVFMRML-ASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           I+     G  + A R+F++++ +S   PN +TY V+I G           L  A+  L  
Sbjct: 293 IDGLCKIGWTERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGK-----LARAEMLLGR 347

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           MV +G+ PN  TYT + +   R    D A  L+ +MK +GF+P+
Sbjct: 348 MVEQGLAPNTNTYTTLIDGHCRGGSFDRAFELMNKMKLEGFLPN 391



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 78/175 (44%), Gaps = 9/175 (5%)

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQ-IKDKGHMPDVVAHTAVIEA 131
            +  +M  +GL  N      + D L K G T  A +LF + +K   + P+V  +T +I  
Sbjct: 272 HVLEEMVGKGLKPNVYTHTSLIDGLCKIGWTERAFRLFLKLVKSSSYKPNVHTYTVMIGG 331

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y   G+   A  +  RM+  G+APN  TY  LI G              A + + +M  +
Sbjct: 332 YCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIDGHCRGGS-----FDRAFELMNKMKLE 386

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
           G  PN  TY A+   F +  K+ +A  +L+   ++G  PD+      + +   QG
Sbjct: 387 GFLPNIYTYNAIIGGFCKKGKIQQAYKVLRMATSQGLCPDKVTYTMLITEHCKQG 441



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 5/133 (3%)

Query: 98  SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA 157
            K G    AL LF Q+ +    PD+  +T +I  Y    Q +++ ++F + L+ G+ P  
Sbjct: 438 CKQGHITYALDLFNQMAENSCHPDIDTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTK 497

Query: 158 YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
            TY  +I G        +     A K    MV  G  P+  TY A+     +  +++EAR
Sbjct: 498 QTYTSMIAGYCRVGKSTS-----ALKVFERMVQHGCLPDPITYGALISGLCKESRLEEAR 552

Query: 218 GLLQQMKAKGFVP 230
            L + M  K  VP
Sbjct: 553 ALFETMLDKHMVP 565



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 6/136 (4%)

Query: 97  LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
             ++G   EA  L A +  +G   D    T V+ A+   G+ ++   +F RM+  G  PN
Sbjct: 191 CCQEGRFEEADALLAAMWREGFSLDSATCTVVVRAFCRQGRFRDVPGLFGRMVEMGNPPN 250

Query: 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
              Y   + GL     G  K    A   L EMVGKG++PN  T+T++ +   +    + A
Sbjct: 251 VVNYTAWVDGL--CKRGYVK---QAFHVLEEMVGKGLKPNVYTHTSLIDGLCKIGWTERA 305

Query: 217 -RGLLQQMKAKGFVPD 231
            R  L+ +K+  + P+
Sbjct: 306 FRLFLKLVKSSSYKPN 321



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 54/139 (38%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M     K+G    A  L  ++ ++G  P+   +T +I+ +   G    A  +  +M   G
Sbjct: 328 MIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIDGHCRGGSFDRAFELMNKMKLEG 387

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN YTY  +I G           +  A K L     +G+ P+  TYT +     +   
Sbjct: 388 FLPNIYTYNAIIGGFCKKGK-----IQQAYKVLRMATSQGLCPDKVTYTMLITEHCKQGH 442

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +  A  L  QM      PD
Sbjct: 443 ITYALDLFNQMAENSCHPD 461



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 72/160 (45%), Gaps = 10/160 (6%)

Query: 76  EIFHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           E+ +KM+ EG   N +  ++A+     K G   +A ++      +G  PD V +T +I  
Sbjct: 378 ELMNKMKLEGFLPN-IYTYNAIIGGFCKKGKIQQAYKVLRMATSQGLCPDKVTYTMLITE 436

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +   G    AL +F +M  +   P+  TY  +I     A     + +  +Q+   + +  
Sbjct: 437 HCKQGHITYALDLFNQMAENSCHPDIDTYTTII-----AMYCQQRQMEQSQQLFDKCLSI 491

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G+ P   TYT++   + R  K   A  + ++M   G +PD
Sbjct: 492 GLVPTKQTYTSMIAGYCRVGKSTSALKVFERMVQHGCLPD 531



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/157 (21%), Positives = 74/157 (47%), Gaps = 8/157 (5%)

Query: 80  KMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           +M  +GL   TN    + D   + G    A +L  ++K +G +P++  + A+I  +   G
Sbjct: 347 RMVEQGLAPNTNTYTTLIDGHCRGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKG 406

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196
           + ++A +V     + G+ P+  TY +LI        G+   +  A     +M      P+
Sbjct: 407 KIQQAYKVLRMATSQGLCPDKVTYTMLIT--EHCKQGH---ITYALDLFNQMAENSCHPD 461

Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK 233
             TYT +   + + +++++++ L  +  + G VP ++
Sbjct: 462 IDTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQ 498



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 5/118 (4%)

Query: 109 LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
           LF +    G +P    +T++I  Y   G+   AL+VF RM+  G  P+  TY  LI GL 
Sbjct: 484 LFDKCLSIGLVPTKQTYTSMIAGYCRVGKSTSALKVFERMVQHGCLPDPITYGALISGLC 543

Query: 169 AAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK 226
             +      L +A+     M+ K M P   T   +   + R  K   A   L  +  +
Sbjct: 544 KESR-----LEEARALFETMLDKHMVPCDVTCVTLAYEYCRRDKTTIAVSFLDGLDKR 596


>gi|357164338|ref|XP_003580022.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Brachypodium distachyon]
          Length = 966

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 91/179 (50%), Gaps = 15/179 (8%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M+  G+  +      + D+  K GL  +A   F +++  G  P+VV +TA++ AY 
Sbjct: 474 LFQEMKRAGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYL 533

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA------AAADGNAKILGDAQKYLME 187
            + Q  +A  +F RM+ +   PNA TY+ LI GL        A +   K++G +     +
Sbjct: 534 KSKQLIQAHDIFHRMVDAACYPNAVTYSALIDGLCKAGEIQKACEVYEKLIGTSGNVESD 593

Query: 188 MVGKG-----MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
              +G     + PN  TY A+ +   +AQKV +A  LL  M A G  P++  V +ALID
Sbjct: 594 FYFEGNDTCTIAPNVVTYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQ-IVYDALID 651



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 90/187 (48%), Gaps = 12/187 (6%)

Query: 49  TKSKLPPPYDPFKKVVDEEPTDPR-NL-QEIFHKMRTEGLTNNAVK---MFDALSKDGLT 103
           TK    P    +  ++D    D R +L  ++  +M  +    N V    M D LSK G  
Sbjct: 670 TKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGEI 729

Query: 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
            +AL L + +++KG  P+VV +TA+I+     G+   +L++F +M + G APN  TY VL
Sbjct: 730 EKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPNYVTYRVL 789

Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           I    AA      +L +A   L EM       +   Y    + F  ++K   + GLL++M
Sbjct: 790 INHCCAAG-----LLDEAHLLLDEMKHTHWPKHLQGYHCAVQGF--SKKFIASLGLLEEM 842

Query: 224 KAKGFVP 230
           ++   VP
Sbjct: 843 ESHETVP 849



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 88/204 (43%), Gaps = 17/204 (8%)

Query: 49  TKSKLPPPYDPFK----KVVDEEPTDPRNLQEIFHKMRTEGLTNNAV-------KMFDAL 97
           T    PP Y  +      +  +E      L ++  K+  E L  + V            L
Sbjct: 368 TTCGSPPGYVAYNIFIGSICGQEELPNAELLDLVEKVYEEMLAASCVLNKVNTANFSRCL 427

Query: 98  SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA 157
              G   +A Q+  ++  KG +PD   +T VI     A + +++  +F  M  +GV P+ 
Sbjct: 428 CGVGKFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDV 487

Query: 158 YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
           YTY +LI     A      ++  A+ +  EM   G  PN  TYTA+  A+++++++ +A 
Sbjct: 488 YTYTILIDSFCKAG-----LIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAH 542

Query: 218 GLLQQMKAKGFVPDEKAVKEALID 241
            +  +M      P+      ALID
Sbjct: 543 DIFHRMVDAACYPN-AVTYSALID 565



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 72/160 (45%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            E+   M   G   N +    + D   K G    A ++F ++   G++P V  +T++I+ 
Sbjct: 628 HELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRMTKCGYLPSVHTYTSLIDR 687

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G+   A++V   ML     PN  TY  +I GL+   +     +  A   L  M  K
Sbjct: 688 MFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGE-----IEKALNLLSLMEEK 742

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G  PN  TYTA+ +   +  K D +  L +QM +KG  P+
Sbjct: 743 GCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPN 782



 Score = 70.1 bits (170), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 73/153 (47%), Gaps = 6/153 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K     +A +L   +   G  P+ + + A+I+ +   G+   A  VF+RM   G
Sbjct: 614 LIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRMTKCG 673

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+ +TY  LI  +    DG   +   A K L EM+     PN  TYTA+ +   +  +
Sbjct: 674 YLPSVHTYTSLIDRM--FKDGRLDL---AMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGE 728

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
           +++A  LL  M+ KG  P+      ALID  G+
Sbjct: 729 IEKALNLLSLMEEKGCSPN-VVTYTALIDGLGK 760



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 71/151 (47%), Gaps = 8/151 (5%)

Query: 76  EIFHKMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +I  +M  +G    T+   K+   L +     ++  LF ++K  G  PDV  +T +I+++
Sbjct: 438 QILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTYTILIDSF 497

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             AG  ++A   F  M + G +PN  TY  L+          +K L  A      MV   
Sbjct: 498 CKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYL-----KSKQLIQAHDIFHRMVDAA 552

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
             PNA TY+A+ +   +A ++ +A  + +++
Sbjct: 553 CYPNAVTYSALIDGLCKAGEIQKACEVYEKL 583



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 81/205 (39%), Gaps = 31/205 (15%)

Query: 57  YDPFKKVVD-EEP--TDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQI 113
           YD   +++  E+P  T  R L+EI    R E L      +     + GL  EAL+   ++
Sbjct: 137 YDALAEILGFEDPARTAERLLREIGEDDR-EVLRRLLNVLVRRCCRHGLWDEALEELGRL 195

Query: 114 KDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA-- 171
           KD G+ P  V + A+++  ASAGQ +   RV   M ASG   +  T     + L      
Sbjct: 196 KDFGYRPSAVTYNALVQVLASAGQVEMGFRVQKEMSASGFCMDRSTIGYFAQALCKVGRW 255

Query: 172 ----------DGN---------------AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEA 206
                     D N               A +  +A  +L  M      PN  TY  +   
Sbjct: 256 ADALNMLEKEDFNLDTVLCTQMISGLMEASLFNEAMSFLHRMRCNSCIPNVVTYRTLLSG 315

Query: 207 FVRAQKVDEARGLLQQMKAKGFVPD 231
           F++ ++    + ++  M  +G  P+
Sbjct: 316 FLKKKQFGWCKRIINMMMTEGCNPN 340



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 72/187 (38%), Gaps = 38/187 (20%)

Query: 81  MRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ 137
           M  +G + N V    + D L K G    +L+LF Q+  KG  P+ V +  +I    +AG 
Sbjct: 739 MEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPNYVTYRVLINHCCAAGL 798

Query: 138 GKEA---------------------------------LRVFMRMLASGVAPNAYTYAVLI 164
             EA                                 L +   M +    P A  Y +LI
Sbjct: 799 LDEAHLLLDEMKHTHWPKHLQGYHCAVQGFSKKFIASLGLLEEMESHETVPIAPVYGMLI 858

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
              + A  G  +   +  K L+E+       + G Y ++ +A   A +V+EA  L  +M 
Sbjct: 859 DSFSKA--GRLETALELHKELVEVSSSLNMTSTGMYASLIQALCLASQVEEAFTLYTEMT 916

Query: 225 AKGFVPD 231
            KG VPD
Sbjct: 917 RKGIVPD 923



 Score = 42.0 bits (97), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 52/135 (38%), Gaps = 8/135 (5%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
           AL K G   +AL +   ++ +    D V  T +I     A    EA+    RM  +   P
Sbjct: 248 ALCKVGRWADALNM---LEKEDFNLDTVLCTQMISGLMEASLFNEAMSFLHRMRCNSCIP 304

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           N  TY  L+ G         K  G  ++ +  M+ +G  PN   + ++   +  A     
Sbjct: 305 NVVTYRTLLSGFL-----KKKQFGWCKRIINMMMTEGCNPNPSLFNSLVHGYCNAGDYAY 359

Query: 216 ARGLLQQMKAKGFVP 230
           A  L  +M   G  P
Sbjct: 360 AYKLFNRMTTCGSPP 374


>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial [Vitis vinifera]
 gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
          Length = 765

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 84/160 (52%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+F +M  +G+  N V +    D + K G  + A++ F +++ KG   + V +TA+I A
Sbjct: 436 RELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRA 495

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           + +    ++A+ +F  ML +G +P+A  Y  LI GL+ A       L  A   L +M   
Sbjct: 496 FCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGK-----LDRASFVLSKMKEA 550

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G  P+  ++  +   F R  K+DEA  +L++M+  G  PD
Sbjct: 551 GFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPD 590



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 67/140 (47%), Gaps = 6/140 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGH-MPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
           + D L K G   E L L  +++ +   MP+ V +  +I+ Y  A   + A  +F +M   
Sbjct: 386 LIDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKD 445

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           GV PN  T   L+ G+      N      A ++  EM GKG++ NA TYTA+  AF    
Sbjct: 446 GVPPNVVTLNTLVDGMCKHGRING-----AVEFFNEMQGKGLKGNAVTYTALIRAFCNVN 500

Query: 212 KVDEARGLLQQMKAKGFVPD 231
            +++A  L  +M   G  PD
Sbjct: 501 NIEKAMELFDEMLEAGCSPD 520



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 77/169 (45%), Gaps = 8/169 (4%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F +M   G + +A+    +   LS+ G    A  + +++K+ G  PD+V+   +I  +
Sbjct: 507 ELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGF 566

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               +  EA  +   M  +G+ P+  TY  LI   +   D        A + + +MV +G
Sbjct: 567 CRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGD-----FSTAHRLMKKMVKEG 621

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           + P   TY A+  A+     +DEA  + + M +   VP    +   LI+
Sbjct: 622 LVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKVPPNTVIYNILIN 670



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 61/139 (43%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   K  +   A +LF Q+   G  P+VV    +++     G+   A+  F  M   G
Sbjct: 422 LIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKG 481

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +  NA TY  LI+        N   +  A +   EM+  G  P+A  Y  +     +A K
Sbjct: 482 LKGNAVTYTALIRAFC-----NVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGK 536

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +D A  +L +MK  GF PD
Sbjct: 537 LDRASFVLSKMKEAGFSPD 555



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 9/159 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  KM+  G + + V    + +   +     EA ++  ++++ G  PD V +  +I  ++
Sbjct: 543 VLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFS 602

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG- 192
             G    A R+  +M+  G+ P   TY  LI   A   +GN   L +A K   +M     
Sbjct: 603 KTGDFSTAHRLMKKMVKEGLVPTVVTYGALIH--AYCLNGN---LDEAMKIFRDMSSTSK 657

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + PN   Y  +  +  R  +VD A  L+  MK KG  P+
Sbjct: 658 VPPNTVIYNILINSLCRKNQVDLALSLMDDMKVKGVKPN 696



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 72/152 (47%), Gaps = 8/152 (5%)

Query: 81  MRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140
           ++ +G+T N   +    SK G    A +L  ++  +G +P VV + A+I AY   G   E
Sbjct: 587 IKPDGVTYNT--LISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDE 644

Query: 141 ALRVFMRMLA-SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGT 199
           A+++F  M + S V PN   Y +LI  L      +      A   + +M  KG++PN  T
Sbjct: 645 AMKIFRDMSSTSKVPPNTVIYNILINSLCRKNQVDL-----ALSLMDDMKVKGVKPNTNT 699

Query: 200 YTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + A+F+       + +A  L+ +M      PD
Sbjct: 700 FNAMFKGLQEKNWLSKAFELMDRMTEHACNPD 731



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 66/149 (44%), Gaps = 12/149 (8%)

Query: 109 LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRM---LASG--VAPNAYTYAVL 163
           L A++K+    P+VV    +I       +  EAL VF +M    ++G  V P+  TY  L
Sbjct: 327 LLAEMKEMDIQPNVVTFGILINHLCKFRRVDEALEVFEKMNGGESNGFLVEPDVITYNTL 386

Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           I GL        + LG  ++  M    + M PN  TY  + + + +A  ++ AR L  QM
Sbjct: 387 IDGLCKVGR-QEEGLGLVER--MRSQPRCM-PNTVTYNCLIDGYCKASMIEAARELFDQM 442

Query: 224 KAKGFVPDEKAVKEALIDKRGQGFRGVIN 252
              G VP        L+D  G    G IN
Sbjct: 443 NKDG-VPPNVVTLNTLVD--GMCKHGRIN 468


>gi|297743427|emb|CBI36294.3| unnamed protein product [Vitis vinifera]
          Length = 517

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 85/161 (52%), Gaps = 11/161 (6%)

Query: 75  QEIFHKMRTEGLTNNAVKMFDALSKD----GLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           QE F K+  E + N   K +  L +     G + EA +LF +++++G   DVVA+ +++E
Sbjct: 178 QEFFDKVNVEVMPN--AKTYSILMRGWGDVGDSSEARKLFEEMRERGCAVDVVAYNSLLE 235

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
           A    G   EA ++F  M ++G+AP+A +Y++ I+      D     +  A + L  M  
Sbjct: 236 ALCKGGNVDEAYKLFREMGSNGLAPDACSYSIFIRAYCEVND-----IHSAFQVLDRMRR 290

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             + PN  TY  + +   +++KVDEA  LL +M  +G  PD
Sbjct: 291 YNLVPNVFTYNCIVKKLCKSEKVDEAYQLLDEMIERGVSPD 331



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 86/199 (43%), Gaps = 17/199 (8%)

Query: 67  EPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVV 123
           E  D  +  ++  +MR   L  N      +   L K     EA QL  ++ ++G  PD+ 
Sbjct: 274 EVNDIHSAFQVLDRMRRYNLVPNVFTYNCIVKKLCKSEKVDEAYQLLDEMIERGVSPDLW 333

Query: 124 AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA--DGNAKILGDA 181
           ++ A+   +    +  +ALR+  RM      P+ +TY +++K L      D    + G  
Sbjct: 334 SYNAIQAFHCDHCEVNKALRLISRMEKENCMPDRHTYNMVLKMLLRVGRFDRVTDVWGGM 393

Query: 182 QKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ-KVDEARGLLQQMKAKGFVPDEKAVKEALI 240
           ++       +G  P A TY  +   F + + K++EA    + M   G  P    V+  L+
Sbjct: 394 EE-------RGFYPAASTYAVMVHGFCKKKGKLEEACKYFEMMIDDGIPPYSCTVE--LL 444

Query: 241 DKR--GQGFRGVINILFGK 257
             R  G GF   I++L GK
Sbjct: 445 RNRVIGLGFSEQIDVLAGK 463


>gi|242039015|ref|XP_002466902.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
 gi|241920756|gb|EER93900.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
          Length = 653

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 72/139 (51%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   ++GL +  ++L  Q+ + G +PDV+ +T VI  +   G   EA+ +   M A G
Sbjct: 371 LVDFFCQNGLVYRVIELLEQMLEHGCVPDVITYTTVINGFCKEGLIDEAVMLLKSMAACG 430

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN  +Y +++KGL +     A+   DA+  + +M+ +G  PN  T+  V     +   
Sbjct: 431 CRPNTISYTIVLKGLCS-----AERWVDAEDLMSQMIEQGCSPNPVTFNTVINFLCKKGL 485

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V++A  LL+QM   G  PD
Sbjct: 486 VEQAIELLKQMLLNGCSPD 504



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 78/191 (40%), Gaps = 33/191 (17%)

Query: 74  LQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           +Q++  +M   G   N V    +   L ++GL     Q+ AQ+ D G  PD+  +  V++
Sbjct: 244 VQDLMEEMVRVGCPPNVVTFNTLIGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYATVLD 303

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA------------------- 171
                G  + A  +  RM + G+ PN   Y  ++KGL +A                    
Sbjct: 304 GVCKEGHLEVAHEILDRMPSYGLKPNVVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPL 363

Query: 172 -DGNAKILGD----------AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
            D    IL D            + L +M+  G  P+  TYT V   F +   +DEA  LL
Sbjct: 364 DDVTFNILVDFFCQNGLVYRVIELLEQMLEHGCVPDVITYTTVINGFCKEGLIDEAVMLL 423

Query: 221 QQMKAKGFVPD 231
           + M A G  P+
Sbjct: 424 KSMAACGCRPN 434



 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 64/120 (53%), Gaps = 8/120 (6%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+ + M  +G++ N +    +  ALSK+G  +  +Q+F  I+D     D V + AVI + 
Sbjct: 526 ELLNVMVNKGMSPNTIIYSSIASALSKEGRINRVIQMFDNIQDVTIRSDAVLYNAVISSL 585

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G    A+     M++SG  PN  TY +LI+GL  A++G  K   +AQ+ L E+  KG
Sbjct: 586 CKRGGTDRAIEFLAYMVSSGCMPNESTYTILIRGL--ASEGFVK---EAQEMLTELCSKG 640



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 79/186 (42%), Gaps = 33/186 (17%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +++  +M  +G + N V    + + L K GL  +A++L  Q+   G  PD+++++ VI+ 
Sbjct: 455 EDLMSQMIEQGCSPNPVTFNTVINFLCKKGLVEQAIELLKQMLLNGCSPDLISYSTVIDG 514

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN-----------AKILGD 180
              AG+  EAL +   M+  G++PN   Y+ +   L+     N             I  D
Sbjct: 515 LGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSKEGRINRVIQMFDNIQDVTIRSD 574

Query: 181 AQKY-------------------LMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221
           A  Y                   L  MV  G  PN  TYT +         V EA+ +L 
Sbjct: 575 AVLYNAVISSLCKRGGTDRAIEFLAYMVSSGCMPNESTYTILIRGLASEGFVKEAQEMLT 634

Query: 222 QMKAKG 227
           ++ +KG
Sbjct: 635 ELCSKG 640



 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 53/128 (41%), Gaps = 7/128 (5%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYAS-AGQGKEALRVFMRMLAS-GVAPNAYTYAVL 163
           A+++   +  +G   DV     V+ A     G   EALR+   +  S G  P+  +Y  +
Sbjct: 172 AVRVLQDLHGRGCALDVGNCNLVLNAVCDQGGSVDEALRLLRDLPTSFGCDPDVVSYNAV 231

Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           +KGL  A     K  G  Q  + EMV  G  PN  T+  +     R    +    +L QM
Sbjct: 232 LKGLCMA-----KRWGRVQDLMEEMVRVGCPPNVVTFNTLIGYLCRNGLFERVHQVLAQM 286

Query: 224 KAKGFVPD 231
              G  PD
Sbjct: 287 VDHGCTPD 294



 Score = 38.5 bits (88), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 53/129 (41%), Gaps = 18/129 (13%)

Query: 125 HTAVIEAYASAGQGKEALRVFMRMLASGVA--PNAYTYAVLIKGLAAAADGNAKILGDAQ 182
           + A++  Y  AGQ   A     R LA+ V   PNAYTY  +++ L A        + DA 
Sbjct: 86  YNAMVSGYCRAGQLASA-----RRLAASVPVPPNAYTYFPVVRALCARGR-----IADAL 135

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG---LLQQMKAKGF---VPDEKAVK 236
             L EM  +G  P    Y  + EA          R    +LQ +  +G    V +   V 
Sbjct: 136 SVLDEMRRRGCAPIPPMYHVILEAACSRGGGGGFRSAVRVLQDLHGRGCALDVGNCNLVL 195

Query: 237 EALIDKRGQ 245
            A+ D+ G 
Sbjct: 196 NAVCDQGGS 204


>gi|356549210|ref|XP_003542990.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Glycine max]
          Length = 648

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 73/127 (57%), Gaps = 5/127 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA +++ ++ D+G  PDVVAH  ++E      +  +A+++F  M A G +PN  +Y ++I
Sbjct: 359 EAGRVWNEMIDRGFNPDVVAHNVMLEGLLKCKKKSDAIKLFEIMKAKGPSPNVRSYTIMI 418

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           +          K++G+A +Y   MV +G +P+A  YT +   F R +K+D    LL++M+
Sbjct: 419 QDFC-----KQKLMGEAIEYFDVMVDRGCQPDAALYTCLITGFGRQKKMDMVYSLLKEMR 473

Query: 225 AKGFVPD 231
            +G  PD
Sbjct: 474 ERGCPPD 480



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 69/162 (42%), Gaps = 8/162 (4%)

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F  M+ +G + N      M     K  L  EA++ F  + D+G  PD   +T +I  +
Sbjct: 397 KLFEIMKAKGPSPNVRSYTIMIQDFCKQKLMGEAIEYFDVMVDRGCQPDAALYTCLITGF 456

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               +      +   M   G  P+  TY  LIK + +       +  DA +   +M+  G
Sbjct: 457 GRQKKMDMVYSLLKEMRERGCPPDGRTYNALIKLMTSQ-----HMPDDAVRIYKKMIQSG 511

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
           ++P   TY  + +++   +  +    +  +M  KG  PD+ +
Sbjct: 512 IKPTIHTYNMIMKSYFVTKNYEMGHEIWDEMHQKGCCPDDNS 553



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 74/165 (44%), Gaps = 11/165 (6%)

Query: 72  RNLQE---IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAH 125
           +NL E   ++++M   G   + V    M + L K     +A++LF  +K KG  P+V ++
Sbjct: 355 KNLLEAGRVWNEMIDRGFNPDVVAHNVMLEGLLKCKKKSDAIKLFEIMKAKGPSPNVRSY 414

Query: 126 TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185
           T +I+ +       EA+  F  M+  G  P+A  Y  LI G      G  K +      L
Sbjct: 415 TIMIQDFCKQKLMGEAIEYFDVMVDRGCQPDAALYTCLITGF-----GRQKKMDMVYSLL 469

Query: 186 MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
            EM  +G  P+  TY A+ +        D+A  + ++M   G  P
Sbjct: 470 KEMRERGCPPDGRTYNALIKLMTSQHMPDDAVRIYKKMIQSGIKP 514



 Score = 53.5 bits (127), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 5/119 (4%)

Query: 109 LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
           L  +++++G  PD   + A+I+   S     +A+R++ +M+ SG+ P  +TY +++K   
Sbjct: 468 LLKEMRERGCPPDGRTYNALIKLMTSQHMPDDAVRIYKKMIQSGIKPTIHTYNMIMKSYF 527

Query: 169 AAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
              +          +   EM  KG  P+  +Y       +R  +  EA   L++M  KG
Sbjct: 528 VTKNYEM-----GHEIWDEMHQKGCCPDDNSYIVYIGGLIRQDRSGEACKYLEEMLEKG 581



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 6/145 (4%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +A+ +F  +K  G    V     ++++ ++A  GKEA  VF + L     P+  TY +L+
Sbjct: 290 KAVGIFDLMKKYGFKVGVDVINFLLDSLSTAKLGKEAQAVFEK-LKDRFTPSLQTYTILL 348

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            G         K L +A +   EM+ +G  P+   +  + E  ++ +K  +A  L + MK
Sbjct: 349 SGWC-----RLKNLLEAGRVWNEMIDRGFNPDVVAHNVMLEGLLKCKKKSDAIKLFEIMK 403

Query: 225 AKGFVPDEKAVKEALIDKRGQGFRG 249
           AKG  P+ ++    + D   Q   G
Sbjct: 404 AKGPSPNVRSYTIMIQDFCKQKLMG 428


>gi|356518400|ref|XP_003527867.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Glycine max]
          Length = 546

 Score = 86.3 bits (212), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/161 (32%), Positives = 79/161 (49%), Gaps = 10/161 (6%)

Query: 76  EIFHKMRTEGLTN-NAVK---MFDALSKDGLTHEALQLFAQIKDKGHM-PDVVAHTAVIE 130
           EI  +MR    +  N V    + D L ++G   EA  LF ++  + H+ PD + +  +I 
Sbjct: 254 EIVEEMRNSEFSYPNLVTYSTLMDGLCRNGRVKEAFDLFEEMVSRDHIVPDPLTYNVLIN 313

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
            +   G+   A  V   M ++G  PN Y Y+ L+ GL          L DA+  L E+ G
Sbjct: 314 GFCRGGKPDRARNVIQFMKSNGCYPNVYNYSALVDGLCKVGK-----LEDAKGVLAEIKG 368

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            G++P+A TYT++     R  K DEA  LL++MK  G   D
Sbjct: 369 SGLKPDAVTYTSLINFLCRNGKSDEAIELLEEMKENGCQAD 409



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 76/173 (43%), Gaps = 8/173 (4%)

Query: 71  PRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P   + +   M++ G   N      + D L K G   +A  + A+IK  G  PD V +T+
Sbjct: 321 PDRARNVIQFMKSNGCYPNVYNYSALVDGLCKVGKLEDAKGVLAEIKGSGLKPDAVTYTS 380

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           +I      G+  EA+ +   M  +G   ++ T+ VL+ GL            +A   + +
Sbjct: 381 LINFLCRNGKSDEAIELLEEMKENGCQADSVTFNVLLGGLCREGK-----FEEALDMVEK 435

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
           +  +G+  N G+Y  V  +  +  ++  A+ LL  M  +GF P      E L+
Sbjct: 436 LPQQGVYLNKGSYRIVLNSLTQKCELKRAKELLGLMLRRGFQPHYATSNELLV 488



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 74/157 (47%), Gaps = 8/157 (5%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +++  GL  +AV    + + L ++G + EA++L  ++K+ G   D V    ++    
Sbjct: 362 VLAEIKGSGLKPDAVTYTSLINFLCRNGKSDEAIELLEEMKENGCQADSVTFNVLLGGLC 421

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G+ +EAL +  ++   GV  N  +Y +++  L    +     L  A++ L  M+ +G 
Sbjct: 422 REGKFEEALDMVEKLPQQGVYLNKGSYRIVLNSLTQKCE-----LKRAKELLGLMLRRGF 476

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           +P+  T   +     +A  VD+A   L  +   GF P
Sbjct: 477 QPHYATSNELLVCLCKAGMVDDAAVALFDLVEMGFQP 513


>gi|115486223|ref|NP_001068255.1| Os11g0607100 [Oryza sativa Japonica Group]
 gi|77551887|gb|ABA94684.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113645477|dbj|BAF28618.1| Os11g0607100 [Oryza sativa Japonica Group]
          Length = 671

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 80/164 (48%), Gaps = 9/164 (5%)

Query: 72  RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           +++ E F +M   G   N V      D L K     +A  +  ++  +G  P+V  HT +
Sbjct: 233 KDVSEFFRRMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTL 292

Query: 129 IEAYASAGQGKEALRVFMRML-ASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           I+     G  + A R+F++++ +S   PN +TY V+I G           L  A+  L+ 
Sbjct: 293 IDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGK-----LARAEMLLVR 347

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           MV +G++PN  TYT +     +    D A  L+ +MK +GF+P+
Sbjct: 348 MVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPN 391



 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 64/135 (47%), Gaps = 5/135 (3%)

Query: 98  SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA 157
            K G    AL LF ++ + G  PD+ A+T++I  Y    Q +E+ + F + L  G+ P  
Sbjct: 438 CKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTK 497

Query: 158 YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
            TY  +I G      G + +   A +    MV  G   ++ TY A+     +  +++EA+
Sbjct: 498 QTYTSMIAGYCKV--GRSTL---ALRVFERMVQNGCFADSITYGALISGLCKESRLEEAK 552

Query: 218 GLLQQMKAKGFVPDE 232
            L + M  K  VP E
Sbjct: 553 ALYEGMLDKRLVPCE 567



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 72/162 (44%), Gaps = 11/162 (6%)

Query: 75  QEIFHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           +++F  M   G+  +  + F AL     ++G   E   L A +   G   D    T V+ 
Sbjct: 166 RKVFDGMTRAGVCPDE-RSFRALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVR 224

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
           +    G+ K+    F RML +G  PN   Y   I GL        + +  A   L EMVG
Sbjct: 225 SLCEKGRFKDVSEFFRRMLETGTPPNVVNYTAWIDGLC-----KRRYVKQAFHVLEEMVG 279

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEA-RGLLQQMKAKGFVPD 231
           +G++PN  T+T + +   +    + A R  L+ +K+  + P+
Sbjct: 280 RGLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPN 321



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 72/157 (45%), Gaps = 8/157 (5%)

Query: 80  KMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           +M  +GL   TN    +     K G    A +L  ++K +G +P++  + AVI+ +   G
Sbjct: 347 RMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKG 406

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196
           + +EA +V     + G+  +  TY +LI        G+   +  A      MV  G  P+
Sbjct: 407 KIQEAYKVLRMATSQGLKFDKITYTILIT--EHCKQGH---ITYALDLFDRMVENGCCPD 461

Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK 233
              YT++   + + ++++E++    +    G +P ++
Sbjct: 462 IEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQ 498



 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 76/205 (37%), Gaps = 47/205 (22%)

Query: 72  RNLQEIFH---KMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQ-IKDKGHMPDVVA 124
           R +++ FH   +M   GL  N      + D L K G T  A +LF + IK   + P+V  
Sbjct: 265 RYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHT 324

Query: 125 HTAVIEAYASAGQGKEALRVFMRMLASGVAP----------------------------- 155
           +T +I  Y   G+   A  + +RM+  G+ P                             
Sbjct: 325 YTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMK 384

Query: 156 ------NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
                 N YTY  +I G           + +A K L     +G++ +  TYT +     +
Sbjct: 385 QEGFLPNIYTYNAVIDGFCKKGK-----IQEAYKVLRMATSQGLKFDKITYTILITEHCK 439

Query: 210 AQKVDEARGLLQQMKAKGFVPDEKA 234
              +  A  L  +M   G  PD +A
Sbjct: 440 QGHITYALDLFDRMVENGCCPDIEA 464


>gi|302785283|ref|XP_002974413.1| hypothetical protein SELMODRAFT_174049 [Selaginella moellendorffii]
 gi|300158011|gb|EFJ24635.1| hypothetical protein SELMODRAFT_174049 [Selaginella moellendorffii]
          Length = 447

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 73/139 (52%), Gaps = 6/139 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +     K G   +AL+L  ++K  G  P+VV HT +I    +AG+  +AL  F R +   
Sbjct: 36  LMQGFCKAGEFQQALELLDEMKSNGVRPNVVIHTTIIRGLCTAGKVSQALLHF-RRIGED 94

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            APN YTY++L+  L  +   +     +A   + EMV KG  PN  TY A+ + F + ++
Sbjct: 95  CAPNVYTYSILVDALCKSGQPH-----EAYGLVTEMVKKGCSPNVVTYNALIDGFRKLER 149

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +DE   LL++M  +G   D
Sbjct: 150 LDEVLMLLKEMSQRGCRAD 168



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++   M ++G   + V    +  A +  G T+++L+L  ++   G++ D      VI  +
Sbjct: 258 QVLLSMYSQGCKTDDVSYKILVVAFASAGRTYDSLELLGRMLGSGYILDTKTMNVVIHKF 317

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             AG   EA ++F  M   G  P+  TY  LI     A   +      A K L +M+   
Sbjct: 318 CKAGDLHEAHQLFKSMCQRGSIPSNVTYNTLIGAFCKAQQPDT-----AVKLLHQMIQAD 372

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +PN  TY ++ ++F R Q+ +EARG+ Q M   G  PD
Sbjct: 373 FKPNVITYNSIIKSFCREQREEEARGIFQMMVDSGCFPD 411



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 85/185 (45%), Gaps = 12/185 (6%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  KM  EG   N V    +   L K+    EA Q+   +  +G   D V++  ++ A+A
Sbjct: 224 LLEKMIQEGTRPNQVNYRTVLLMLCKNSRLDEAYQVLLSMYSQGCKTDDVSYKILVVAFA 283

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
           SAG+  ++L +  RML SG   +  T  V+I     A D     L +A +    M  +G 
Sbjct: 284 SAGRTYDSLELLGRMLGSGYILDTKTMNVVIHKFCKAGD-----LHEAHQLFKSMCQRGS 338

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD----EKAVKEALIDKRGQGFRG 249
            P+  TY  +  AF +AQ+ D A  LL QM    F P+       +K    ++R +  RG
Sbjct: 339 IPSNVTYNTLIGAFCKAQQPDTAVKLLHQMIQADFKPNVITYNSIIKSFCREQREEEARG 398

Query: 250 VINIL 254
           +  ++
Sbjct: 399 IFQMM 403



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 64/126 (50%), Gaps = 11/126 (8%)

Query: 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQ 182
           V++  +++ +  AG+ ++AL +   M ++GV PN   +  +I+GL  A   +  +L    
Sbjct: 31  VSYGILMQGFCKAGEFQQALELLDEMKSNGVRPNVVIHTTIIRGLCTAGKVSQALLH--- 87

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDK 242
                 +G+   PN  TY+ + +A  ++ +  EA GL+ +M  KG  P+      ALID 
Sbjct: 88  ---FRRIGEDCAPNVYTYSILVDALCKSGQPHEAYGLVTEMVKKGCSPN-VVTYNALID- 142

Query: 243 RGQGFR 248
              GFR
Sbjct: 143 ---GFR 145



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 71/172 (41%), Gaps = 28/172 (16%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DAL K G  HEA  L  ++  KG  P+VV + A+I+ +    +  E L +   M   G
Sbjct: 105 LVDALCKSGQPHEAYGLVTEMVKKGCSPNVVTYNALIDGFRKLERLDEVLMLLKEMSQRG 164

Query: 153 VAPNAYTYAVLIKGLAA--AADGNAKIL----------------------GD----AQKY 184
              +  TY +++       + D   ++L                      GD    A   
Sbjct: 165 CRADVITYTMILDIFCKNNSIDEAYRLLNALEKRNVVTYNSLFTALSTAEGDRTTEALSL 224

Query: 185 LMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK 236
           L +M+ +G RPN   Y  V     +  ++DEA  +L  M ++G   D+ + K
Sbjct: 225 LEKMIQEGTRPNQVNYRTVLLMLCKNSRLDEAYQVLLSMYSQGCKTDDVSYK 276


>gi|225443015|ref|XP_002267278.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Vitis vinifera]
          Length = 624

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 85/161 (52%), Gaps = 11/161 (6%)

Query: 75  QEIFHKMRTEGLTNNAVKMFDALSKD----GLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           QE F K+  E + N   K +  L +     G + EA +LF +++++G   DVVA+ +++E
Sbjct: 205 QEFFDKVNVEVMPN--AKTYSILMRGWGDVGDSSEARKLFEEMRERGCAVDVVAYNSLLE 262

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
           A    G   EA ++F  M ++G+AP+A +Y++ I+      D     +  A + L  M  
Sbjct: 263 ALCKGGNVDEAYKLFREMGSNGLAPDACSYSIFIRAYCEVND-----IHSAFQVLDRMRR 317

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             + PN  TY  + +   +++KVDEA  LL +M  +G  PD
Sbjct: 318 YNLVPNVFTYNCIVKKLCKSEKVDEAYQLLDEMIERGVSPD 358



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 86/199 (43%), Gaps = 17/199 (8%)

Query: 67  EPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVV 123
           E  D  +  ++  +MR   L  N      +   L K     EA QL  ++ ++G  PD+ 
Sbjct: 301 EVNDIHSAFQVLDRMRRYNLVPNVFTYNCIVKKLCKSEKVDEAYQLLDEMIERGVSPDLW 360

Query: 124 AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA--DGNAKILGDA 181
           ++ A+   +    +  +ALR+  RM      P+ +TY +++K L      D    + G  
Sbjct: 361 SYNAIQAFHCDHCEVNKALRLISRMEKENCMPDRHTYNMVLKMLLRVGRFDRVTDVWGGM 420

Query: 182 QKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ-KVDEARGLLQQMKAKGFVPDEKAVKEALI 240
           ++       +G  P A TY  +   F + + K++EA    + M   G  P    V+  L+
Sbjct: 421 EE-------RGFYPAASTYAVMVHGFCKKKGKLEEACKYFEMMIDDGIPPYSCTVE--LL 471

Query: 241 DKR--GQGFRGVINILFGK 257
             R  G GF   I++L GK
Sbjct: 472 RNRVIGLGFSEQIDVLAGK 490


>gi|449444222|ref|XP_004139874.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
 gi|449492651|ref|XP_004159061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
          Length = 588

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 71/142 (50%), Gaps = 5/142 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K G   EA+ LF ++ D+G  P+VV  + +I+     GQ  +A ++   M+  G
Sbjct: 243 IIDGLCKVGNWEEAICLFNEMVDQGVQPNVVTFSVLIDMLCKEGQVIKAKKLLEMMIQIG 302

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN +TY  LIKG     D N+     A++  + M  KG  P+  +Y  +   + +  K
Sbjct: 303 IVPNLFTYTSLIKGFCLVGDLNS-----AKELFVSMPSKGYEPDVISYNMLINGYCKTLK 357

Query: 213 VDEARGLLQQMKAKGFVPDEKA 234
           V+EA  L  +M   G  PD K 
Sbjct: 358 VEEAMKLFNEMLHVGMWPDVKT 379



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 81/181 (44%), Gaps = 18/181 (9%)

Query: 77  IFHKMRTEGLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           ++ +M   GL  + + +    + L      +E L   A I  +G++PDVV  T +I+   
Sbjct: 113 LYKQMHLAGLWPDLLTLNILINCLCNVNRINEGLAAMAGIMRRGYIPDVVTFTTLIKGLC 172

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNA------KILGDAQKYLME 187
              +  EA ++FMRM   G  PN  TY  LIKGL A  + N       ++L D   Y+  
Sbjct: 173 VEHRIIEATKLFMRMQKLGCTPNVVTYGTLIKGLCALGNINIALKWHQEMLNDTSPYVF- 231

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID---KRG 244
                 RPN  +Y+ + +   +    +EA  L  +M  +G  P+       LID   K G
Sbjct: 232 ----NCRPNVISYSIIIDGLCKVGNWEEAICLFNEMVDQGVQPN-VVTFSVLIDMLCKEG 286

Query: 245 Q 245
           Q
Sbjct: 287 Q 287



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 14/165 (8%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDK------GHMPDVVAHT 126
           ++F +M+  G T N V    +   L   G  + AL+   ++ +          P+V++++
Sbjct: 182 KLFMRMQKLGCTPNVVTYGTLIKGLCALGNINIALKWHQEMLNDTSPYVFNCRPNVISYS 241

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
            +I+     G  +EA+ +F  M+  GV PN  T++VLI  L          +  A+K L 
Sbjct: 242 IIIDGLCKVGNWEEAICLFNEMVDQGVQPNVVTFSVLIDMLCKEGQ-----VIKAKKLLE 296

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            M+  G+ PN  TYT++ + F     ++ A+ L   M +KG+ PD
Sbjct: 297 MMIQIGIVPNLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPD 341



 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 67/130 (51%), Gaps = 5/130 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K G    A +LF ++ ++G  PD +A++++I  +   GQ  +A  +F +M  +G
Sbjct: 453 LIDGLCKAGKLETAWELFEKLYEEGIQPDAMAYSSMIHGFCKKGQVDKANILFQKMEENG 512

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            +P+  TY++L++G   +       L    + L  M+ K + P+ G Y  V +   + +K
Sbjct: 513 CSPDLITYSILMRGFYESNK-----LEKVVQLLHRMIEKDVWPDDGIYAIVEDMVCKDEK 567

Query: 213 VDEARGLLQQ 222
             E   LLQ+
Sbjct: 568 YKEWLDLLQR 577



 Score = 63.5 bits (153), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 69/151 (45%), Gaps = 7/151 (4%)

Query: 94  FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGV 153
            D L K+G   EA++LF +++      D+     +I+    AG+ + A  +F ++   G+
Sbjct: 419 LDGLCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEGI 478

Query: 154 APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV 213
            P+A  Y+ +I G           +  A     +M   G  P+  TY+ +   F  + K+
Sbjct: 479 QPDAMAYSSMIHGFCKKGQ-----VDKANILFQKMEENGCSPDLITYSILMRGFYESNKL 533

Query: 214 DEARGLLQQMKAKGFVPDE--KAVKEALIDK 242
           ++   LL +M  K   PD+   A+ E ++ K
Sbjct: 534 EKVVQLLHRMIEKDVWPDDGIYAIVEDMVCK 564



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 82/189 (43%), Gaps = 34/189 (17%)

Query: 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
           G  + A +LF  +  KG+ PDV+++  +I  Y    + +EA+++F  ML  G+ P+  T 
Sbjct: 321 GDLNSAKELFVSMPSKGYEPDVISYNMLINGYCKTLKVEEAMKLFNEMLHVGMWPDVKTS 380

Query: 161 AVLIKGLAAAA----------------------------DGNAK--ILGDAQKYLMEMVG 190
            VL+K L  A                             DG  K   + +A K   E+  
Sbjct: 381 GVLLKALFLAGKVDDAKELFRVIKPYAMPKDLCICCIFLDGLCKNGYIFEAMKLFNELES 440

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL--IDKRGQGFR 248
             M+ +  T+  + +   +A K++ A  L +++  +G  PD  A    +    K+GQ  +
Sbjct: 441 YNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEGIQPDAMAYSSMIHGFCKKGQVDK 500

Query: 249 GVINILFGK 257
              NILF K
Sbjct: 501 A--NILFQK 507


>gi|414874052|tpg|DAA52609.1| TPA: hypothetical protein ZEAMMB73_367214 [Zea mays]
          Length = 716

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 85/174 (48%), Gaps = 13/174 (7%)

Query: 77  IFHKMRTEGLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +MR   +  + V +     +L K G   EA  +F  +  KG  PDV ++  ++  YA
Sbjct: 315 VFKEMRRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIMLNGYA 374

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
           + G   +   +F  ML  G+AP+ YT++VLIK  A     N  +L  A     EM   G+
Sbjct: 375 TKGCLVDMTDLFDLMLGDGIAPDIYTFSVLIKAYA-----NCGMLDKAMIIFNEMRDHGV 429

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGF 247
           +P+  TYT V  A  R  K+D+A     QM  +G  PD+ A    LI    QGF
Sbjct: 430 KPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAY-HCLI----QGF 478



 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 85/172 (49%), Gaps = 9/172 (5%)

Query: 73  NLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           ++ ++F  M  +G+  +      +  A +  G+  +A+ +F +++D G  PDVV +T VI
Sbjct: 381 DMTDLFDLMLGDGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYTTVI 440

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
            A    G+  +A+  F +M+  GVAP+ Y Y  LI+G           L  A++ ++E++
Sbjct: 441 AALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGS-----LLKAKELILEIM 495

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
             GMR +   ++++     +  ++ +A+ +       G  PD   V   L+D
Sbjct: 496 NNGMRLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNVGQHPD-AVVYSMLMD 546



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 71/141 (50%), Gaps = 7/141 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHM--PDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           +  +L   G + +A  L   + + G +  PDVVA+T VI+ +   G   +A  +F  M+ 
Sbjct: 192 LLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYTTVIDCFFKEGDVNKACDLFKEMVQ 251

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
            G+ P+  TY+ ++  L       A+ +G A+ +L +MV KG+ P+  TY  +   +   
Sbjct: 252 RGIPPDLVTYSSVVHALC-----KARAMGKAEAFLRQMVNKGVLPDNWTYNNLIYGYSST 306

Query: 211 QKVDEARGLLQQMKAKGFVPD 231
            +  EA  + ++M+    +PD
Sbjct: 307 GQWKEAVRVFKEMRRHSILPD 327



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 71/156 (45%), Gaps = 8/156 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+  ++   G+  + V    + + L K G   +A  +F    + G  PD V ++ +++ 
Sbjct: 488 KELILEIMNNGMRLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDG 547

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y   G+ ++ALRVF  M+++G+ PN   Y  L+ G           + +      EM+ K
Sbjct: 548 YCLVGKMEKALRVFDAMVSAGIEPNVVVYGTLVNGYCKIGR-----IDEGLSLFREMLQK 602

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
           G++P+   Y  + +    A +   A+    +M   G
Sbjct: 603 GIKPSTILYNIIIDGLFVAGRTVPAKVKFHEMTESG 638



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 5/147 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   K+G  ++A  LF ++  +G  PD+V +++V+ A   A    +A     +M+  G
Sbjct: 229 VIDCFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQMVNKG 288

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V P+ +TY  LI G ++   G  K   +A +   EM    + P+  T   +  +  +  K
Sbjct: 289 VLPDNWTYNNLIYGYSST--GQWK---EAVRVFKEMRRHSILPDVVTLNMLMGSLCKYGK 343

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEAL 239
           + EAR +   M  KG  PD  + K  L
Sbjct: 344 IKEARDVFDTMAMKGQNPDVFSYKIML 370



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 72/172 (41%), Gaps = 33/172 (19%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFM-RMLAS 151
           + D  ++      AL  F Q+   G   D++    +++ +  A +  EAL + + R    
Sbjct: 121 LMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEALDILLHRTPEL 180

Query: 152 GVAPNAYTYAVLIKGLA-------------AAADGNAKILGDAQKY-------------- 184
           G  P+ ++Y++L+K L                A+G A    D   Y              
Sbjct: 181 GCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYTTVIDCFFKEGDVN 240

Query: 185 -----LMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
                  EMV +G+ P+  TY++V  A  +A+ + +A   L+QM  KG +PD
Sbjct: 241 KACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQMVNKGVLPD 292



 Score = 53.9 bits (128), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 73/162 (45%), Gaps = 16/162 (9%)

Query: 76  EIFHKMRTEGLTNNAVKMFDALSKDGLTHEAL----QLFAQIKDKGHMPDVVAHTAVIEA 131
           E F++M  +G+  +    +  L +   TH +L    +L  +I + G   D+V  +++I  
Sbjct: 454 EKFNQMIDQGVAPDKYA-YHCLIQGFCTHGSLLKAKELILEIMNNGMRLDIVFFSSIINN 512

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM---EM 188
               G+  +A  +F   +  G  P+A  Y++L+ G          ++G  +K L     M
Sbjct: 513 LCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYC--------LVGKMEKALRVFDAM 564

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           V  G+ PN   Y  +   + +  ++DE   L ++M  KG  P
Sbjct: 565 VSAGIEPNVVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKP 606



 Score = 53.5 bits (127), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 67/157 (42%), Gaps = 8/157 (5%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F  M + G+  N V    + +   K G   E L LF ++  KG  P  + +  +I+   
Sbjct: 560 VFDAMVSAGIEPNVVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLF 619

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG+   A   F  M  SG+A N  TY ++++G         +   +A     E+    +
Sbjct: 620 VAGRTVPAKVKFHEMTESGIAINKCTYNIVLRGFF-----KNRCFDEAIFLFKELRAMNV 674

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           + +  T   +     + ++V+EA+ L   +   G VP
Sbjct: 675 KIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVP 711


>gi|224142151|ref|XP_002324422.1| predicted protein [Populus trichocarpa]
 gi|222865856|gb|EEF02987.1| predicted protein [Populus trichocarpa]
          Length = 453

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 84/164 (51%), Gaps = 8/164 (4%)

Query: 71  PRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           PR    IF+ +  EG     +    +  AL++  L    L+L +++++ G  PD +   +
Sbjct: 29  PREAHSIFNSLMDEGHKPTLITYTTLVAALTRQKLFKSILRLISKVEENGMKPDSILFNS 88

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           +I A++ +G  KEA+++F +M  SG  P   T+  LIKG      GNA    +A K L  
Sbjct: 89  IINAFSESGNMKEAMKLFRKMKESGCKPTTSTFNTLIKGY-----GNAGKTEEALKLLEF 143

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +   G++PN  TY  +  A+   + ++EA  ++ +M A G  PD
Sbjct: 144 LQDGGVKPNQRTYNILVRAWCNKENMEEAWNMVYKMVASGMQPD 187



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 85/167 (50%), Gaps = 8/167 (4%)

Query: 72  RNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           +++  +  K+   G+  +++    + +A S+ G   EA++LF ++K+ G  P       +
Sbjct: 65  KSILRLISKVEENGMKPDSILFNSIINAFSESGNMKEAMKLFRKMKESGCKPTTSTFNTL 124

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I+ Y +AG+ +EAL++   +   GV PN  TY +L++        N + + +A   + +M
Sbjct: 125 IKGYGNAGKTEEALKLLEFLQDGGVKPNQRTYNILVRAWC-----NKENMEEAWNMVYKM 179

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAV 235
           V  GM+P+A TY  +  A+    +   A  ++ +M  +   P+E+  
Sbjct: 180 VASGMQPDAVTYNTLARAYAEKGETIRAEEMILEMLNRRVTPNERTC 226



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 86/184 (46%), Gaps = 10/184 (5%)

Query: 53  LPPPYDPFKKVVD--EEPTDPRNLQEIFHKMRTEGL---TNNAVKMFDALSKDGLTHEAL 107
           + P    F  +++   E  + +   ++F KM+  G    T+    +       G T EAL
Sbjct: 79  MKPDSILFNSIINAFSESGNMKEAMKLFRKMKESGCKPTTSTFNTLIKGYGNAGKTEEAL 138

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
           +L   ++D G  P+   +  ++ A+ +    +EA  +  +M+ASG+ P+A TY  L +  
Sbjct: 139 KLLEFLQDGGVKPNQRTYNILVRAWCNKENMEEAWNMVYKMVASGMQPDAVTYNTLARAY 198

Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
           A   +        A++ ++EM+ + + PN  T + +   + +   + +A   + +MK  G
Sbjct: 199 AEKGE-----TIRAEEMILEMLNRRVTPNERTCSIIVNGYCKEGNMVDASRFVFRMKELG 253

Query: 228 FVPD 231
            +P+
Sbjct: 254 VLPN 257



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 78/159 (49%), Gaps = 11/159 (6%)

Query: 88  NNAVKMF-DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFM 146
           N+ +K F D +  +G+  E L L   +++ G  PDVV  + ++ A++SAG+  +   +F 
Sbjct: 262 NSLIKGFLDTMDTEGV-DEVLTL---MEENGVRPDVVTFSTIMNAWSSAGRMDKCKEIFN 317

Query: 147 RMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEA 206
            M+ + + P+ + +++L KG   A +        A+  L  M   G+ PN    T V   
Sbjct: 318 DMVKAEIEPDIHAFSILAKGYVRAGEPE-----KAESILTSMRKYGVHPNVVICTTVISG 372

Query: 207 FVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
           +  A K++ A  + ++M   G  P+ K   E LI   G+
Sbjct: 373 WCSAGKMEHAMKVYEKMCEIGVSPNLKTY-ETLIWGYGE 410



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 68/138 (49%), Gaps = 10/138 (7%)

Query: 74  LQEIFHKMRTEGLTNNAVKMFDALSKD----GLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
            +EIF+ M    +  + +  F  L+K     G   +A  +   ++  G  P+VV  T VI
Sbjct: 312 CKEIFNDMVKAEIEPD-IHAFSILAKGYVRAGEPEKAESILTSMRKYGVHPNVVICTTVI 370

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
             + SAG+ + A++V+ +M   GV+PN  TY  LI G      G AK    A++ L  M 
Sbjct: 371 SGWCSAGKMEHAMKVYEKMCEIGVSPNLKTYETLIWGY-----GEAKQPLKAEELLQVME 425

Query: 190 GKGMRPNAGTYTAVFEAF 207
            KG+ P  GT   + +A+
Sbjct: 426 EKGVFPKKGTMQLIADAW 443



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 8/164 (4%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D   + E+   M   G+  + V    + +A S  G   +  ++F  +      PD+ A +
Sbjct: 273 DTEGVDEVLTLMEENGVRPDVVTFSTIMNAWSSAGRMDKCKEIFNDMVKAEIEPDIHAFS 332

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
            + + Y  AG+ ++A  +   M   GV PN      +I G  +A       +  A K   
Sbjct: 333 ILAKGYVRAGEPEKAESILTSMRKYGVHPNVVICTTVISGWCSAGK-----MEHAMKVYE 387

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           +M   G+ PN  TY  +   +  A++  +A  LLQ M+ KG  P
Sbjct: 388 KMCEIGVSPNLKTYETLIWGYGEAKQPLKAEELLQVMEEKGVFP 431



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 74/169 (43%), Gaps = 11/169 (6%)

Query: 69  TDPRNLQEIF---HKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDV 122
            +  N++E +   +KM   G+  +AV    +  A ++ G T  A ++  ++ ++   P+ 
Sbjct: 164 CNKENMEEAWNMVYKMVASGMQPDAVTYNTLARAYAEKGETIRAEEMILEMLNRRVTPNE 223

Query: 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQ 182
              + ++  Y   G   +A R   RM   GV PN + +  LIKG     D          
Sbjct: 224 RTCSIIVNGYCKEGNMVDASRFVFRMKELGVLPNLFVFNSLIKGFLDTMDTEG-----VD 278

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + L  M   G+RP+  T++ +  A+  A ++D+ + +   M      PD
Sbjct: 279 EVLTLMEENGVRPDVVTFSTIMNAWSSAGRMDKCKEIFNDMVKAEIEPD 327


>gi|334183970|ref|NP_177858.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332197845|gb|AEE35966.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 402

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 81/163 (49%), Gaps = 17/163 (10%)

Query: 76  EIFHKMRTEGLTNNAVK-------MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           ++F +M   G   N V        +F+A   D    EAL L  ++KD    P+V  +T +
Sbjct: 211 KVFKEMTQNGCHRNEVSYTQLIYGLFEAKKID----EALSLLVKMKDDNCCPNVRTYTVL 266

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I+A   +GQ  EA+ +F +M  SG+ P+   Y VLI+   +        L +A   L  M
Sbjct: 267 IDALCGSGQKSEAMNLFKQMSESGIKPDDCMYTVLIQSFCS-----GDTLDEASGLLEHM 321

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +  G+ PN  TY A+ + F + + V +A GLL +M  +  VPD
Sbjct: 322 LENGLMPNVITYNALIKGFCK-KNVHKAMGLLSKMLEQNLVPD 363



 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 74/159 (46%), Gaps = 9/159 (5%)

Query: 80  KMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           KM+ +    N      + DAL   G   EA+ LF Q+ + G  PD   +T +I+++ S  
Sbjct: 250 KMKDDNCCPNVRTYTVLIDALCGSGQKSEAMNLFKQMSESGIKPDDCMYTVLIQSFCSGD 309

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196
              EA  +   ML +G+ PN  TY  LIKG         K +  A   L +M+ + + P+
Sbjct: 310 TLDEASGLLEHMLENGLMPNVITYNALIKGFC------KKNVHKAMGLLSKMLEQNLVPD 363

Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAV 235
             TY  +      +  +D A  LL  M+  G VP+++ V
Sbjct: 364 LITYNTLIAGQCSSGNLDSAYRLLSLMEESGLVPNQRTV 402



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 73/166 (43%), Gaps = 10/166 (6%)

Query: 76  EIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASA 135
           EI +K+  +   N    +  +L++ GL  E  +L+ ++ +    PD+     ++  Y   
Sbjct: 113 EIKYKLTPKCYNN----LLSSLARFGLVEEMKRLYTEMLEDLVSPDIYTFNTLVNGYCKL 168

Query: 136 GQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP 195
           G   EA +    ++ +G  P+ +TY   I G     + +A     A K   EM   G   
Sbjct: 169 GYVVEAKQYVTWLIQAGCDPDYFTYTSFITGHCRRKEVDA-----AFKVFKEMTQNGCHR 223

Query: 196 NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           N  +YT +      A+K+DEA  LL +MK     P+ +     LID
Sbjct: 224 NEVSYTQLIYGLFEAKKIDEALSLLVKMKDDNCCPNVRTYT-VLID 268



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 69/167 (41%), Gaps = 10/167 (5%)

Query: 84  EGLTNNAVKMFDAL----SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGK 139
           E L +  +  F+ L     K G   EA Q    +   G  PD   +T+ I  +    +  
Sbjct: 148 EDLVSPDIYTFNTLVNGYCKLGYVVEAKQYVTWLIQAGCDPDYFTYTSFITGHCRRKEVD 207

Query: 140 EALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGT 199
            A +VF  M  +G   N  +Y  LI GL       AK + +A   L++M      PN  T
Sbjct: 208 AAFKVFKEMTQNGCHRNEVSYTQLIYGLF-----EAKKIDEALSLLVKMKDDNCCPNVRT 262

Query: 200 YTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
           YT + +A   + +  EA  L +QM   G  PD+  +   LI     G
Sbjct: 263 YTVLIDALCGSGQKSEAMNLFKQMSESGIKPDD-CMYTVLIQSFCSG 308


>gi|125569916|gb|EAZ11431.1| hypothetical protein OsJ_01299 [Oryza sativa Japonica Group]
          Length = 563

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 80/164 (48%), Gaps = 9/164 (5%)

Query: 72  RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           +++ E F +M   G   N V      D L K     +A  +  ++  +G  P+V  HT +
Sbjct: 125 KDVSEFFRRMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTL 184

Query: 129 IEAYASAGQGKEALRVFMRML-ASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           I+     G  + A R+F++++ +S   PN +TY V+I G           L  A+  L+ 
Sbjct: 185 IDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGK-----LARAEMLLVR 239

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           MV +G++PN  TYT +     +    D A  L+ +MK +GF+P+
Sbjct: 240 MVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPN 283



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 64/135 (47%), Gaps = 5/135 (3%)

Query: 98  SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA 157
            K G    AL LF ++ + G  PD+ A+T++I  Y    Q +E+ + F + L  G+ P  
Sbjct: 330 CKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTK 389

Query: 158 YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
            TY  +I G      G + +   A +    MV  G   ++ TY A+     +  +++EA+
Sbjct: 390 QTYTSMIAGYCKV--GRSTL---ALRVFERMVQNGCFADSITYGALISGLCKESRLEEAK 444

Query: 218 GLLQQMKAKGFVPDE 232
            L + M  K  VP E
Sbjct: 445 ALYEGMLDKRLVPCE 459



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 6/137 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
              ++G   E   L A +   G   D    T V+ +    G+ K+    F RML +G  P
Sbjct: 82  VCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVSEFFRRMLETGTPP 141

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           N   Y   I GL        + +  A   L EMVG+G++PN  T+T + +   +    + 
Sbjct: 142 NVVNYTAWIDGLC-----KRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWTER 196

Query: 216 A-RGLLQQMKAKGFVPD 231
           A R  L+ +K+  + P+
Sbjct: 197 AFRLFLKLIKSSSYKPN 213



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 72/157 (45%), Gaps = 8/157 (5%)

Query: 80  KMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           +M  +GL   TN    +     K G    A +L  ++K +G +P++  + AVI+ +   G
Sbjct: 239 RMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKG 298

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196
           + +EA +V     + G+  +  TY +LI        G+   +  A      MV  G  P+
Sbjct: 299 KIQEAYKVLRMATSQGLKFDKITYTILIT--EHCKQGH---ITYALDLFDRMVENGCCPD 353

Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK 233
              YT++   + + ++++E++    +    G +P ++
Sbjct: 354 IEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQ 390



 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 33/142 (23%), Positives = 57/142 (40%), Gaps = 5/142 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M     ++G    A  L  ++ ++G  P+   +T +I  +   G    A  +  +M   G
Sbjct: 220 MIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEG 279

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN YTY  +I G           + +A K L     +G++ +  TYT +     +   
Sbjct: 280 FLPNIYTYNAVIDGFCKKGK-----IQEAYKVLRMATSQGLKFDKITYTILITEHCKQGH 334

Query: 213 VDEARGLLQQMKAKGFVPDEKA 234
           +  A  L  +M   G  PD +A
Sbjct: 335 ITYALDLFDRMVENGCCPDIEA 356


>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
           [Vitis vinifera]
 gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
          Length = 890

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 53/170 (31%), Positives = 85/170 (50%), Gaps = 8/170 (4%)

Query: 73  NLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           N  E+F  M  +G   N V    +   L + G  +EAL+LFA + +    P V  +T +I
Sbjct: 247 NAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLI 306

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
            A + +G+  EAL +F  M   G  PN +TY VLI GL          + +A+K L EM 
Sbjct: 307 YALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENK-----MDEARKMLSEMS 361

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
            KG+ P+  TY A+ + + +   +D+A  +L  M++    P+ +   E +
Sbjct: 362 EKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELI 411



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 45/137 (32%), Positives = 68/137 (49%), Gaps = 5/137 (3%)

Query: 95  DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           D L K+G   EA  LF  +K KG   + V +TA+I+ Y   G+   A  +  RML     
Sbjct: 482 DTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACL 541

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
           PN+YTY VLI+GL        K + +A   + +M+  G++P   TYT +    ++    D
Sbjct: 542 PNSYTYNVLIEGLC-----KEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFD 596

Query: 215 EARGLLQQMKAKGFVPD 231
            A  +   M + G+ PD
Sbjct: 597 HALKVFNHMVSLGYQPD 613



 Score = 70.9 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 42/159 (26%), Positives = 76/159 (47%), Gaps = 8/159 (5%)

Query: 77  IFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F++M+ +G   N      + D L K+    EA ++ +++ +KG +P VV + A+I+ Y 
Sbjct: 321 LFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYC 380

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G   +A  +   M ++   PN  TY  LI GL        + +  A   L +M+ + +
Sbjct: 381 KEGMIDDAFEILDLMESNSCGPNTRTYNELICGLC-----KKRKVHKAMALLNKMLERKL 435

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
            P+  TY ++     +   ++ A  LL  M   G VPD+
Sbjct: 436 SPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQ 474



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 42/154 (27%), Positives = 76/154 (49%), Gaps = 14/154 (9%)

Query: 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
           G+  E   + A++ ++G +PD+V +T +I+ YA  G    A      M+ +G  P+ Y  
Sbjct: 628 GMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIV 687

Query: 161 AVLIKGLA---AAADGNAKILGD----------AQKYLMEMVGKGMRPNAGTYTAVFEAF 207
           ++LIK L+      +  ++I  D          A K   +MV  G   +   Y A+   F
Sbjct: 688 SILIKNLSHENRMKETRSEIGIDSVSNTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGF 747

Query: 208 VRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
            + ++++EA+GL+  MK +G  P E  +  +L+D
Sbjct: 748 CQQERLEEAQGLVHHMKERGMSPSED-IYNSLLD 780



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F  ++ +G+  N V    + D   K G    A  L  ++ +   +P+   +  +IE   
Sbjct: 496 LFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLC 555

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
              + KEA  +  +ML  GV P   TY +LI  +    DG       A K    MV  G 
Sbjct: 556 KEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEM--LKDG---AFDHALKVFNHMVSLGY 610

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +P+  TYTA   A+     ++E   ++ +M  +G +PD
Sbjct: 611 QPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPD 648



 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 5/138 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K+    EA  L A++   G  P VV +T +I      G    AL+VF  M++ G
Sbjct: 550 LIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLG 609

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  TY   +    +       +L +    + +M  +G+ P+  TYT + + + R   
Sbjct: 610 YQPDVCTYTAFLHAYFSQG-----MLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGL 664

Query: 213 VDEARGLLQQMKAKGFVP 230
              A   L+ M   G  P
Sbjct: 665 THRAFDFLKCMVDTGCKP 682



 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 71/178 (39%), Gaps = 26/178 (14%)

Query: 74  LQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           + ++  KM  EG+  + V    + D  ++ GLTH A      + D G  P +   + +I+
Sbjct: 633 VDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIK 692

Query: 131 AYASAGQGKE------------------ALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172
             +   + KE                  AL++F +M+  G   +   Y  LI G      
Sbjct: 693 NLSHENRMKETRSEIGIDSVSNTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFC---- 748

Query: 173 GNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
              + L +AQ  +  M  +GM P+   Y ++ +   +     EA  L+  M   G +P
Sbjct: 749 -QQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLP 805



 Score = 47.4 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 69/163 (42%), Gaps = 15/163 (9%)

Query: 76  EIFHKMRTEG--------LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           E+F KM  +G           N + M  +LSK  L  E   ++ ++ +    P++    A
Sbjct: 142 EVFRKMNADGEFKFKPTLRCYNTILM--SLSKFLLIDEMKTVYLELLNNQISPNIYTFNA 199

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           ++  Y   G   EA     +++ +G+ P+ +TY  LI G         K + +A +  + 
Sbjct: 200 MVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHC-----RNKGVDNAYEVFLI 254

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           M  KG + N  +YT +      A +++EA  L   M      P
Sbjct: 255 MPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCP 297



 Score = 41.2 bits (95), Expect = 0.38,   Method: Composition-based stats.
 Identities = 32/138 (23%), Positives = 63/138 (45%), Gaps = 8/138 (5%)

Query: 75  QEIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           Q + H M+  G++ +      + D   K G+  EA++L   + + G +P + ++  ++  
Sbjct: 757 QGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCG 816

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G  ++A  VF  +L+ G   +   + VLI GL         ++ +  + +  M  K
Sbjct: 817 LYIEGSNEKAKAVFHGLLSCGYNYDEVAWKVLIDGLL-----KRDLVDECSELIDIMEEK 871

Query: 192 GMRPNAGTYTAVFEAFVR 209
           G +PN  TY+ + E   R
Sbjct: 872 GCQPNPLTYSLLIEGLER 889


>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
          Length = 1099

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 53/170 (31%), Positives = 85/170 (50%), Gaps = 8/170 (4%)

Query: 73  NLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           N  E+F  M  +G   N V    +   L + G  +EAL+LFA + +    P V  +T +I
Sbjct: 247 NAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLI 306

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
            A + +G+  EAL +F  M   G  PN +TY VLI GL          + +A+K L EM 
Sbjct: 307 YALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENK-----MDEARKMLSEMS 361

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
            KG+ P+  TY A+ + + +   +D+A  +L  M++    P+ +   E +
Sbjct: 362 EKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELI 411



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 45/137 (32%), Positives = 68/137 (49%), Gaps = 5/137 (3%)

Query: 95  DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           D L K+G   EA  LF  +K KG   + V +TA+I+ Y   G+   A  +  RML     
Sbjct: 482 DTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACL 541

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
           PN+YTY VLI+GL        K + +A   + +M+  G++P   TYT +    ++    D
Sbjct: 542 PNSYTYNVLIEGLC-----KEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFD 596

Query: 215 EARGLLQQMKAKGFVPD 231
            A  +   M + G+ PD
Sbjct: 597 HALKVFNHMVSLGYQPD 613



 Score = 70.9 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 42/159 (26%), Positives = 76/159 (47%), Gaps = 8/159 (5%)

Query: 77  IFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F++M+ +G   N      + D L K+    EA ++ +++ +KG +P VV + A+I+ Y 
Sbjct: 321 LFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYC 380

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G   +A  +   M ++   PN  TY  LI GL        + +  A   L +M+ + +
Sbjct: 381 KEGMIDDAFEILDLMESNSCGPNTRTYNELICGLC-----KKRKVHKAMALLNKMLERKL 435

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
            P+  TY ++     +   ++ A  LL  M   G VPD+
Sbjct: 436 SPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQ 474



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 78/165 (47%), Gaps = 25/165 (15%)

Query: 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
           G+  E   + A++ ++G +PD+V +T +I+ YA  G    A      M+ +G  P+ Y  
Sbjct: 628 GMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIV 687

Query: 161 AVLIK---------------GLAAAADGNAKILGD---------AQKYLMEMVGKGMRPN 196
           ++LIK               G+ + ++ N+  + D         A K   +MV  G   +
Sbjct: 688 SILIKNLSHENRMKETRSEIGIDSVSNVNSVDIADVWKTLEYEIALKLFEKMVEHGCTID 747

Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
              Y A+   F + ++++EA+GL+  MK +G  P E  +  +L+D
Sbjct: 748 VSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSED-IYNSLLD 791



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F  ++ +G+  N V    + D   K G    A  L  ++ +   +P+   +  +IE   
Sbjct: 496 LFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLC 555

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
              + KEA  +  +ML  GV P   TY +LI  +    DG       A K    MV  G 
Sbjct: 556 KEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEM--LKDG---AFDHALKVFNHMVSLGY 610

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +P+  TYTA   A+     ++E   ++ +M  +G +PD
Sbjct: 611 QPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPD 648



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 41/141 (29%), Positives = 63/141 (44%), Gaps = 8/141 (5%)

Query: 80  KMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           KM T G+    V    +   + KDG    AL++F  +   G+ PDV  +TA + AY S G
Sbjct: 569 KMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQG 628

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196
             +E   V  +M   G+ P+  TY VLI G A        +   A  +L  MV  G +P+
Sbjct: 629 MLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLG-----LTHRAFDFLKCMVDTGCKPS 683

Query: 197 AGTYTAVFEAFVRAQKVDEAR 217
               + + +      ++ E R
Sbjct: 684 LYIVSILIKNLSHENRMKETR 704



 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 59/138 (42%), Gaps = 5/138 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K+    EA  L A++   G  P VV +T +I      G    AL+VF  M++ G
Sbjct: 550 LIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLG 609

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  TY   +    +       +L +    + +M  +G+ P+  TYT + + + R   
Sbjct: 610 YQPDVCTYTAFLHAYFSQG-----MLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGL 664

Query: 213 VDEARGLLQQMKAKGFVP 230
              A   L+ M   G  P
Sbjct: 665 THRAFDFLKCMVDTGCKP 682



 Score = 47.4 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 69/163 (42%), Gaps = 15/163 (9%)

Query: 76  EIFHKMRTEG--------LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           E+F KM  +G           N + M  +LSK  L  E   ++ ++ +    P++    A
Sbjct: 142 EVFRKMNADGEFKFKPTLRCYNTILM--SLSKFLLIDEMKTVYLELLNNQISPNIYTFNA 199

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           ++  Y   G   EA     +++ +G+ P+ +TY  LI G         K + +A +  + 
Sbjct: 200 MVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHC-----RNKGVDNAYEVFLI 254

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           M  KG + N  +YT +      A +++EA  L   M      P
Sbjct: 255 MPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCP 297


>gi|297791089|ref|XP_002863429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297309264|gb|EFH39688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 472

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 78/159 (49%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +IFH+M   G   ++     +   L + G   EA +LF ++ +K   P VV +T++I   
Sbjct: 178 KIFHEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGL 237

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             +    EA+R    M   G+ PN +TY+ L+ GL    DG +     A +    M+ +G
Sbjct: 238 CGSKNVDEAMRYVEEMKGKGIEPNVFTYSSLMDGL--CKDGRSL---QAMELFEMMMARG 292

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            RPN  TYT +     + QK+ EA  LL +M  +G  PD
Sbjct: 293 CRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPD 331



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 79/164 (48%), Gaps = 10/164 (6%)

Query: 73  NLQEIFHK-MRTEGLTNNAVKM---FDALSK-DGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           NL   F+K MR  GL      +     AL + DG     L++F ++  +G  PD   +  
Sbjct: 138 NLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFHEMPKRGCDPDSYTYGT 197

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           +I      G+  EA ++F  M+    AP   TY  LI GL       +K + +A +Y+ E
Sbjct: 198 LISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCG-----SKNVDEAMRYVEE 252

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           M GKG+ PN  TY+++ +   +  +  +A  L + M A+G  P+
Sbjct: 253 MKGKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPN 296



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 73/154 (47%), Gaps = 15/154 (9%)

Query: 79  HKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASA 135
            +M+ +G+  N      + D L KDG + +A++LF  +  +G  P++V +T +I      
Sbjct: 251 EEMKGKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKE 310

Query: 136 GQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP 195
            + +EA+ +  RM   G+ P+A  Y  +I G  A +        +A  +L EM+  G+ P
Sbjct: 311 QKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAVSK-----FREAANFLDEMILGGITP 365

Query: 196 NAGTYTAVFEAFVRAQKVDE-ARGLLQQMKAKGF 228
           N  T+       +  +  +E  RGL     ++ F
Sbjct: 366 NRLTWN------IHVKTSNEVVRGLCTNYPSRAF 393



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/214 (21%), Positives = 87/214 (40%), Gaps = 19/214 (8%)

Query: 36  SSSSDQPTKKYVNTKSK-LPPPYDPFKKVVDEEPTDPRNLQ--EIFHKMRTEGLTNNAVK 92
           S + D+  +     K K + P    +  ++D    D R+LQ  E+F  M   G   N V 
Sbjct: 240 SKNVDEAMRYVEEMKGKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVT 299

Query: 93  ---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRML 149
              +   L K+    EA++L  ++  +G  PD   +  VI  + +  + +EA      M+
Sbjct: 300 YTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAVSKFREAANFLDEMI 359

Query: 150 ASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKY-------LMEMVGKGMRPNAGTYTA 202
             G+ PN  T+ + +K        N  + G    Y        + M  +G+     T  +
Sbjct: 360 LGGITPNRLTWNIHVK------TSNEVVRGLCTNYPSRAFTLYLSMRSRGISVEVETLDS 413

Query: 203 VFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK 236
           + +   +  +  +A  L+ ++   G +P++   K
Sbjct: 414 LVKCLCKKGEFQKAVQLVDEIVTDGCIPNKGTWK 447


>gi|357499719|ref|XP_003620148.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|217074978|gb|ACJ85849.1| unknown [Medicago truncatula]
 gi|355495163|gb|AES76366.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 465

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 80/139 (57%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D + KD   ++A  L++++  KG  P+VV ++A+I  + + G+ K+A+ +F +M++  
Sbjct: 233 IIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGKLKDAVDLFNKMISEN 292

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+ YT+ +L+     +       +  A K + EM  +G  PN  TY+++ +A  +  +
Sbjct: 293 IKPDVYTFNILVDVFCKSGK-----ISYALKLVDEMHDRGQPPNIVTYSSILDALCKTHR 347

Query: 213 VDEARGLLQQMKAKGFVPD 231
           VD+A  LL ++K +G  P+
Sbjct: 348 VDKAVALLTKLKDQGIRPN 366



 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 90/177 (50%), Gaps = 12/177 (6%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F+KM +E +  +      + D   K G    AL+L  ++ D+G  P++V ++++++A 
Sbjct: 283 DLFNKMISENIKPDVYTFNILVDVFCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDAL 342

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               +  +A+ +  ++   G+ PN +TY +LI GL  +       L DA+    +++ KG
Sbjct: 343 CKTHRVDKAVALLTKLKDQGIRPNMHTYTILIDGLCTSGK-----LEDARNIFEDLLVKG 397

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA---VKEALIDKRGQG 246
                 TY  +F  F +    DEA  LL +M+  G +PD K    +K +L  K+G+ 
Sbjct: 398 YDITVVTYIVMFYGFCKKGLFDEASALLSKMEENGCIPDAKTYELIKLSLF-KKGEN 453



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 70/171 (40%), Gaps = 32/171 (18%)

Query: 92  KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
           K+  +L K    H  L L  +++ +G  P++V    +I  +   G    A  VF ++L  
Sbjct: 92  KILGSLVKSKHYHTVLYLSKKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKM 151

Query: 152 GVAPNAYTYAVLIKGLA----------------------------AAADGNAKILGD--- 180
           G  PN  T+  LIKGL                                DG  K+ G+   
Sbjct: 152 GYNPNTITFTTLIKGLCLKGQIHQALNFHDKLVALGFQFNQISYGTLIDGLCKV-GETRA 210

Query: 181 AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           A   L  + GK ++PN   Y+ + +   + + V++A  L  +M +KG  P+
Sbjct: 211 ALDLLRRVDGKLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPN 261


>gi|299471526|emb|CBN80012.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 732

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 89/166 (53%), Gaps = 8/166 (4%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +M  EG+T NA+    +  A +K G   EA+ L  +++  G  PDV+ ++A I+A A
Sbjct: 383 LLREMPMEGVTPNAISYGIVISACAKRGRWREAIDLLQEMQAHGVPPDVINYSAAIDACA 442

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            A + ++AL +   M A+G+ PN  +Y   I   A A  G +KI   A + L EM   G+
Sbjct: 443 QASRWEQALWLLREMPATGLTPNVISYNSAID--ACAKTGRSKI---AVELLREMPAHGL 497

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
            P+  TY+AV  +    ++ +EA  L ++M+ +G  PD  +   A+
Sbjct: 498 APDVITYSAVIASCAMGRQWEEALDLFREMQRQGITPDVVSCNTAI 543



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 84/158 (53%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +M T+G+  N +    +  A +K G   EA+ L  ++++ G  PDV+ +++ I A A
Sbjct: 313 LLMEMPTKGVVANIITYSIVIGACAKWGQWEEAVALLREMQENGVAPDVITYSSTISACA 372

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             GQ +EA+ +   M   GV PNA +Y ++I   A A  G  +   +A   L EM   G+
Sbjct: 373 KKGQWEEAVGLLREMPMEGVTPNAISYGIVIS--ACAKRGRWR---EAIDLLQEMQAHGV 427

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            P+   Y+A  +A  +A + ++A  LL++M A G  P+
Sbjct: 428 PPDVINYSAAIDACAQASRWEQALWLLREMPATGLTPN 465



 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 89/183 (48%), Gaps = 11/183 (6%)

Query: 77  IFHKMRTEGLTNNAVKMFDALS---KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +   M+ +G+  N +    A+S   K G    A+ L  ++   G  PDV+ ++ VI+A A
Sbjct: 243 LLRSMKGQGVKPNVIVYSAAISACRKGGQWETAVDLLKEMPAVGLAPDVITYSTVIDACA 302

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             GQ + A R+ M M   GV  N  TY+++I   A           +A   L EM   G+
Sbjct: 303 KRGQWEPAFRLLMEMPTKGVVANIITYSIVIGACAKWGQWE-----EAVALLREMQENGV 357

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD--EKAVKEALIDKRGQGFRGVI 251
            P+  TY++   A  +  + +EA GLL++M  +G  P+     +  +   KRG+ +R  I
Sbjct: 358 APDVITYSSTISACAKKGQWEEAVGLLREMPMEGVTPNAISYGIVISACAKRGR-WREAI 416

Query: 252 NIL 254
           ++L
Sbjct: 417 DLL 419



 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 51/185 (27%), Positives = 90/185 (48%), Gaps = 11/185 (5%)

Query: 76  EIFHKMRTEGLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F +M+ +G+T + V      +A ++ G   EAL +  ++   G +PD +++   I+A 
Sbjct: 522 DLFREMQRQGITPDVVSCNTAINACAQGGWWEEALDVLGEMPTMGLVPDAISYRTAIDAC 581

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           A   + KE + +   M   G+ P+A +Y   +   A + DG  K   +A   L +M+  G
Sbjct: 582 AKGDRWKEIIDLLREMSTVGLTPDAISYRFAMS--ACSVDGLWK---EALVLLRDMLAVG 636

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG--FRGV 250
           + P+  TY +   A  +  +  EA  LL+QM   G  PD  +   A ID  G G  +   
Sbjct: 637 LSPDVVTYNSAINACAKGGRWKEATVLLRQMPTFGLAPDVNSFNAA-IDACGNGDQWGTA 695

Query: 251 INILF 255
           + +LF
Sbjct: 696 VEVLF 700



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 86/203 (42%), Gaps = 22/203 (10%)

Query: 23  TNTRVNATLQ-----RSLSSSSDQPTKKYVNTKSKLPPPYDPFKKVVDEEPTDPR--NLQ 75
            NT +NA  Q      +L    + PT   V       P    ++  +D      R   + 
Sbjct: 539 CNTAINACAQGGWWEEALDVLGEMPTMGLV-------PDAISYRTAIDACAKGDRWKEII 591

Query: 76  EIFHKMRTEGLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++  +M T GLT +A+       A S DGL  EAL L   +   G  PDVV + + I A 
Sbjct: 592 DLLREMSTVGLTPDAISYRFAMSACSVDGLWKEALVLLRDMLAVGLSPDVVTYNSAINAC 651

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           A  G+ KEA  +  +M   G+AP+  ++   I      A GN    G A + L EM   G
Sbjct: 652 AKGGRWKEATVLLRQMPTFGLAPDVNSFNAAID-----ACGNGDQWGTAVEVLFEMRALG 706

Query: 193 MRPNAGTYTAVFEAFVRAQKVDE 215
           + PN  TY     A  R  + D+
Sbjct: 707 VSPNEATYLTAMYACKRCGEKDD 729



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 83/184 (45%), Gaps = 10/184 (5%)

Query: 53  LPPPYDPFKKVVDEEPTDPRNLQEIF--HKMRTEGLTNNAVKM---FDALSKDGLTHEAL 107
           +PP    +   +D      R  Q ++   +M   GLT N +      DA +K G +  A+
Sbjct: 427 VPPDVINYSAAIDACAQASRWEQALWLLREMPATGLTPNVISYNSAIDACAKTGRSKIAV 486

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
           +L  ++   G  PDV+ ++AVI + A   Q +EAL +F  M   G+ P+  +    I   
Sbjct: 487 ELLREMPAHGLAPDVITYSAVIASCAMGRQWEEALDLFREMQRQGITPDVVSCNTAIN-- 544

Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
            A A G      +A   L EM   G+ P+A +Y    +A  +  +  E   LL++M   G
Sbjct: 545 -ACAQGG--WWEEALDVLGEMPTMGLVPDAISYRTAIDACAKGDRWKEIIDLLREMSTVG 601

Query: 228 FVPD 231
             PD
Sbjct: 602 LTPD 605



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 71/136 (52%), Gaps = 5/136 (3%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
           A +K     EA+ L   +K +G  P+V+ ++A I A    GQ + A+ +   M A G+AP
Sbjct: 230 ACAKVSRWKEAVGLLRSMKGQGVKPNVIVYSAAISACRKGGQWETAVDLLKEMPAVGLAP 289

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY+ +I   A A  G  +    A + LMEM  KG+  N  TY+ V  A  +  + +E
Sbjct: 290 DVITYSTVID--ACAKRGQWE---PAFRLLMEMPTKGVVANIITYSIVIGACAKWGQWEE 344

Query: 216 ARGLLQQMKAKGFVPD 231
           A  LL++M+  G  PD
Sbjct: 345 AVALLREMQENGVAPD 360



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 74/163 (45%), Gaps = 8/163 (4%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHE---ALQLFAQIKDKGHMPDVVAHT 126
           D R   ++  +M+ +G+  ++     A++  G   +   A++L A +  +G  PDV+ ++
Sbjct: 166 DWRKALDVLDRMQEQGVKPDSQNYSSAIAACGNARQWERAVELLASMAARGTPPDVLTYS 225

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
           + I A A   + KEA+ +   M   GV PN   Y+  I            +       L 
Sbjct: 226 SAIAACAKVSRWKEAVGLLRSMKGQGVKPNVIVYSAAISACRKGGQWETAV-----DLLK 280

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFV 229
           EM   G+ P+  TY+ V +A  +  + + A  LL +M  KG V
Sbjct: 281 EMPAVGLAPDVITYSTVIDACAKRGQWEPAFRLLMEMPTKGVV 323



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 8/160 (5%)

Query: 76  EIFHKMRTEGLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++  +M T GL  +A+      DA +K     E + L  ++   G  PD +++   + A 
Sbjct: 557 DVLGEMPTMGLVPDAISYRTAIDACAKGDRWKEIIDLLREMSTVGLTPDAISYRFAMSAC 616

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           +  G  KEAL +   MLA G++P+  TY   I   A A  G  K   +A   L +M   G
Sbjct: 617 SVDGLWKEALVLLRDMLAVGLSPDVVTYNSAIN--ACAKGGRWK---EATVLLRQMPTFG 671

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           + P+  ++ A  +A     +   A  +L +M+A G  P+E
Sbjct: 672 LAPDVNSFNAAIDACGNGDQWGTAVEVLFEMRALGVSPNE 711



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 71/148 (47%), Gaps = 9/148 (6%)

Query: 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
           G   +AL +  +++++G  PD   +++ I A  +A Q + A+ +   M A G  P+  TY
Sbjct: 165 GDWRKALDVLDRMQEQGVKPDSQNYSSAIAACGNARQWERAVELLASMAARGTPPDVLTY 224

Query: 161 AVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
           +  I     AA        +A   L  M G+G++PN   Y+A   A  +  + + A  LL
Sbjct: 225 SSAI-----AACAKVSRWKEAVGLLRSMKGQGVKPNVIVYSAAISACRKGGQWETAVDLL 279

Query: 221 QQMKAKGFVPDEKAVKEALID---KRGQ 245
           ++M A G  PD       +ID   KRGQ
Sbjct: 280 KEMPAVGLAPD-VITYSTVIDACAKRGQ 306


>gi|224054827|ref|XP_002298371.1| predicted protein [Populus trichocarpa]
 gi|222845629|gb|EEE83176.1| predicted protein [Populus trichocarpa]
          Length = 915

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/133 (36%), Positives = 68/133 (51%), Gaps = 5/133 (3%)

Query: 99  KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAY 158
           K G    A+  F ++ DKG  P VV++T++I  Y + G+  EA R++  M   G+APN Y
Sbjct: 448 KLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTY 507

Query: 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218
           T+  LI  L       A  + DA +   EM+ + M PN  TY  + E   +     +A  
Sbjct: 508 TFTTLISALF-----RANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFE 562

Query: 219 LLQQMKAKGFVPD 231
           LL QM  KG VPD
Sbjct: 563 LLNQMVQKGLVPD 575



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + ++L KDG   EA  LF ++ +KG   + V ++ +I+++   G+   A+    +M+ +G
Sbjct: 372 LINSLCKDGKFDEAELLFKEMGEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKMIMAG 431

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +    Y Y  LI G     +     L  A  +  EM+ KG++P   +YT++   +    K
Sbjct: 432 IKITVYPYNSLINGHCKLGN-----LSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGK 486

Query: 213 VDEARGLLQQMKAKGFVPD 231
           + EA  L  +M  KG  P+
Sbjct: 487 LHEAFRLYHEMTGKGIAPN 505



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/159 (26%), Positives = 71/159 (44%), Gaps = 8/159 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M  +GL  N V    + D+  + G    A+    ++   G    V  + ++I  + 
Sbjct: 388 LFKEMGEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSLINGHC 447

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G    A+  F  M+  G+ P   +Y  LI G       N   L +A +   EM GKG+
Sbjct: 448 KLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYC-----NKGKLHEAFRLYHEMTGKGI 502

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
            PN  T+T +  A  RA ++ +A  L  +M  +  +P+E
Sbjct: 503 APNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNE 541



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 78/154 (50%), Gaps = 8/154 (5%)

Query: 77  IFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           ++H+M  +G+  N      +  AL +     +A +LF ++ ++  MP+ V +  +IE + 
Sbjct: 493 LYHEMTGKGIAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHC 552

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G   +A  +  +M+  G+ P+ YTY  LI  L +        + +A+K++ ++  +  
Sbjct: 553 KEGNTVKAFELLNQMVQKGLVPDTYTYRPLISSLCSTGR-----VCEAKKFIDDLHREHF 607

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
           + N   Y+A+   + +  ++ +A G+ ++M  +G
Sbjct: 608 KLNEMCYSALLHGYCKEGRLRDALGVCREMVKRG 641



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 5/131 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   K+  T     L   + D+   PD V +T++I+ Y+ AG  K+A  ++  M+  G
Sbjct: 652 LIDGTIKEQDTSAVFGLLKNMHDQRLRPDKVIYTSMIDGYSKAGSVKKAFGIWDIMIDEG 711

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN  TY  LI  L  A      ++  A+    EM+     PN  TY    +   R   
Sbjct: 712 CTPNIVTYTTLINELCKAG-----LMDKAELLWKEMLVSNSTPNHVTYCCFLDHLAREGS 766

Query: 213 VDEARGLLQQM 223
           +++A  L   M
Sbjct: 767 MEKAVQLHNDM 777



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 44/171 (25%), Positives = 77/171 (45%), Gaps = 13/171 (7%)

Query: 76  EIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASA 135
           E+  ++RT G      ++ + L+K       L LF +I   G  PD+  + AVI ++   
Sbjct: 188 ELMPQVRTLG------EVLNGLAKIRRVDMVLVLFGEILSMGIRPDIYIYVAVIRSFCEL 241

Query: 136 GQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP 195
               +A  +  RM +S +  N   Y VLI GL        K + +A +    ++ KG+  
Sbjct: 242 KNFAKAKEMIQRMESSDL--NVVVYNVLIHGLC-----KNKRVWEAVEIKNGLIQKGLTA 294

Query: 196 NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
           +  TY  +     + Q+ +   G++ +M   GFVP E A+   +   R +G
Sbjct: 295 SEVTYCTLVLGLCKVQEFEVGAGVMDEMIELGFVPTEAALSSLVEGLRRKG 345



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/193 (23%), Positives = 80/193 (41%), Gaps = 43/193 (22%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDV----------- 122
           +F +M  + +  N V    M +   K+G T +A +L  Q+  KG +PD            
Sbjct: 528 LFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQKGLVPDTYTYRPLISSLC 587

Query: 123 ------------------------VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAY 158
                                   + ++A++  Y   G+ ++AL V   M+  GV  +  
Sbjct: 588 STGRVCEAKKFIDDLHREHFKLNEMCYSALLHGYCKEGRLRDALGVCREMVKRGVDMDLV 647

Query: 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218
            YAVLI G     D +A + G     L  M  + +RP+   YT++ + + +A  V +A G
Sbjct: 648 CYAVLIDGTIKEQDTSA-VFG----LLKNMHDQRLRPDKVIYTSMIDGYSKAGSVKKAFG 702

Query: 219 LLQQMKAKGFVPD 231
           +   M  +G  P+
Sbjct: 703 IWDIMIDEGCTPN 715



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 45/171 (26%), Positives = 67/171 (39%), Gaps = 29/171 (16%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M D  SK G   +A  ++  + D+G  P++V +T +I     AG   +A  ++  ML S 
Sbjct: 687 MIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLMDKAELLWKEMLVSN 746

Query: 153 VAPNAYTYAV--------------------LIKGLAA-AADGNAKILG--------DAQK 183
             PN  TY                      ++KGL A     N  + G        +A K
Sbjct: 747 STPNHVTYCCFLDHLAREGSMEKAVQLHNDMLKGLLANTVSYNILVRGFCKLGRVEEATK 806

Query: 184 YLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
            L EM+   + P+  TY+ +     R   +D A      M  KG  PD  A
Sbjct: 807 LLDEMIDNAIFPDCITYSTIIYQCCRRGNLDGAIEFWDTMLNKGLKPDTLA 857



 Score = 46.6 bits (109), Expect = 0.010,   Method: Composition-based stats.
 Identities = 33/143 (23%), Positives = 69/143 (48%), Gaps = 6/143 (4%)

Query: 94  FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGV 153
            D L+++G   +A+QL   +  KG + + V++  ++  +   G+ +EA ++   M+ + +
Sbjct: 758 LDHLAREGSMEKAVQLHNDML-KGLLANTVSYNILVRGFCKLGRVEEATKLLDEMIDNAI 816

Query: 154 APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV 213
            P+  TY+ +I        GN   L  A ++   M+ KG++P+   Y  +      A ++
Sbjct: 817 FPDCITYSTII--YQCCRRGN---LDGAIEFWDTMLNKGLKPDTLAYNFLIYGCCIAGEL 871

Query: 214 DEARGLLQQMKAKGFVPDEKAVK 236
            +A  L   M  +G  P++   K
Sbjct: 872 GKAFELRDDMIRRGVKPNQATHK 894


>gi|11079485|gb|AAG29197.1|AC078898_7 hypothetical protein [Arabidopsis thaliana]
          Length = 441

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 81/163 (49%), Gaps = 17/163 (10%)

Query: 76  EIFHKMRTEGLTNNAVK-------MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           ++F +M   G   N V        +F+A   D    EAL L  ++KD    P+V  +T +
Sbjct: 211 KVFKEMTQNGCHRNEVSYTQLIYGLFEAKKID----EALSLLVKMKDDNCCPNVRTYTVL 266

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I+A   +GQ  EA+ +F +M  SG+ P+   Y VLI+   +        L +A   L  M
Sbjct: 267 IDALCGSGQKSEAMNLFKQMSESGIKPDDCMYTVLIQSFCS-----GDTLDEASGLLEHM 321

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +  G+ PN  TY A+ + F + + V +A GLL +M  +  VPD
Sbjct: 322 LENGLMPNVITYNALIKGFCK-KNVHKAMGLLSKMLEQNLVPD 363



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 73/166 (43%), Gaps = 10/166 (6%)

Query: 76  EIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASA 135
           EI +K+  +   N    +  +L++ GL  E  +L+ ++ +    PD+     ++  Y   
Sbjct: 113 EIKYKLTPKCYNN----LLSSLARFGLVEEMKRLYTEMLEDLVSPDIYTFNTLVNGYCKL 168

Query: 136 GQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP 195
           G   EA +    ++ +G  P+ +TY   I G     + +A     A K   EM   G   
Sbjct: 169 GYVVEAKQYVTWLIQAGCDPDYFTYTSFITGHCRRKEVDA-----AFKVFKEMTQNGCHR 223

Query: 196 NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           N  +YT +      A+K+DEA  LL +MK     P+ +     LID
Sbjct: 224 NEVSYTQLIYGLFEAKKIDEALSLLVKMKDDNCCPNVRTYT-VLID 268



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 65/153 (42%), Gaps = 9/153 (5%)

Query: 84  EGLTNNAVKMFDAL----SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGK 139
           E L +  +  F+ L     K G   EA Q    +   G  PD   +T+ I  +    +  
Sbjct: 148 EDLVSPDIYTFNTLVNGYCKLGYVVEAKQYVTWLIQAGCDPDYFTYTSFITGHCRRKEVD 207

Query: 140 EALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGT 199
            A +VF  M  +G   N  +Y  LI GL       AK + +A   L++M      PN  T
Sbjct: 208 AAFKVFKEMTQNGCHRNEVSYTQLIYGLF-----EAKKIDEALSLLVKMKDDNCCPNVRT 262

Query: 200 YTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           YT + +A   + +  EA  L +QM   G  PD+
Sbjct: 263 YTVLIDALCGSGQKSEAMNLFKQMSESGIKPDD 295



 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 6/111 (5%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DAL   G   EA+ LF Q+ + G  PD   +T +I+++ S     EA  +   ML +G
Sbjct: 266 LIDALCGSGQKSEAMNLFKQMSESGIKPDDCMYTVLIQSFCSGDTLDEASGLLEHMLENG 325

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAV 203
           + PN  TY  LIKG         K +  A   L +M+ + + P+  TY  +
Sbjct: 326 LMPNVITYNALIKGFC------KKNVHKAMGLLSKMLEQNLVPDLITYNTL 370


>gi|413933767|gb|AFW68318.1| hypothetical protein ZEAMMB73_786057 [Zea mays]
          Length = 645

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 82/159 (51%), Gaps = 8/159 (5%)

Query: 74  LQEIFHK-MRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           L E+F K    + +T N   + D L ++GL    +++  Q+ + G MPDV+ +T VI  +
Sbjct: 345 LAEMFDKDCPLDDVTFNI--LVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGF 402

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G   EA+ +   M A G  PN  +Y +++KGL +     A+   DA++ + +M+ +G
Sbjct: 403 CKEGLIDEAVMLLRSMAACGCRPNTVSYTIVLKGLCS-----AERWVDAEELMSQMIQQG 457

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             PN  T+  +     +   V++A  LL+QM   G  PD
Sbjct: 458 CPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPD 496



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 82/176 (46%), Gaps = 8/176 (4%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+  +M  +G   N V    + + L K GL  +A++L  Q+   G  PD+++++ VI+ 
Sbjct: 447 EELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDG 506

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              AG   EAL +   M+  G++PN   Y+     +A+A  G  +I    Q +   +   
Sbjct: 507 LGKAGNTDEALELLNVMVKKGMSPNTIIYS----SIASALSGEGRINKVIQMF-ENIQDT 561

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGF 247
            +R +A  Y AV  +  +  + D A   L  M + G VP+E      +     +GF
Sbjct: 562 TVRSDAVLYNAVISSLCKRGETDRAIEFLAYMVSSGCVPNESTYTILIRGLASEGF 617



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 65/120 (54%), Gaps = 8/120 (6%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+ + M  +G++ N +    +  ALS +G  ++ +Q+F  I+D     D V + AVI + 
Sbjct: 518 ELLNVMVKKGMSPNTIIYSSIASALSGEGRINKVIQMFENIQDTTVRSDAVLYNAVISSL 577

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+   A+     M++SG  PN  TY +LI+GL  A++G  K   +AQ+ L E+  KG
Sbjct: 578 CKRGETDRAIEFLAYMVSSGCVPNESTYTILIRGL--ASEGFVK---EAQEILTELCSKG 632



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 80/192 (41%), Gaps = 33/192 (17%)

Query: 73  NLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           ++Q++  +M   G   N V    +   L ++GL     ++ AQ+ + G  PDV  +  +I
Sbjct: 235 HVQDLMEEMVAAGCPPNIVTFSTLIGHLCRNGLFERVHEVHAQMAEHGCAPDVRMYATII 294

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAA------------------- 170
           +      + + A  +  RM + G++PN   Y  L+KGL +A                   
Sbjct: 295 DGVCKEERLEVARGILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAEGLLAEMFDKDCP 354

Query: 171 -ADGNAKILGD----------AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGL 219
             D    IL D            + L +M+  G  P+  TYT V   F +   +DEA  L
Sbjct: 355 LDDVTFNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVML 414

Query: 220 LQQMKAKGFVPD 231
           L+ M A G  P+
Sbjct: 415 LRSMAACGCRPN 426



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 6/144 (4%)

Query: 89  NAVKMFDALSKDGLTHEALQLFAQIKDK-GHMPDVVAHTAVIEAYASAGQGKEALRVFMR 147
           N   +  A+   G   EA++L   +    G  PDVV++ AV+     A +      +   
Sbjct: 183 NCNLVLQAVCDQGPVDEAVRLLRDLLPSFGCEPDVVSYNAVLRGLCMARRWGHVQDLMEE 242

Query: 148 MLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAF 207
           M+A+G  PN  T++ LI  L         +     +   +M   G  P+   Y  + +  
Sbjct: 243 MVAAGCPPNIVTFSTLIGHLC-----RNGLFERVHEVHAQMAEHGCAPDVRMYATIIDGV 297

Query: 208 VRAQKVDEARGLLQQMKAKGFVPD 231
            + ++++ ARG+L +M + G  P+
Sbjct: 298 CKEERLEVARGILNRMPSYGLSPN 321



 Score = 45.8 bits (107), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 55/121 (45%), Gaps = 11/121 (9%)

Query: 125 HTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKY 184
           + A++  Y  AGQ   A R+   +    VAPNAYTY  L++ L A        + DA   
Sbjct: 82  YNAMVAGYCRAGQLAAARRLAASV---PVAPNAYTYFPLVRALCARGR-----IADALAV 133

Query: 185 LMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF---VPDEKAVKEALID 241
           L +M  +G  P    Y    EA  RA     A G+L+ +  +G    V +   V +A+ D
Sbjct: 134 LDDMARRGCAPTPPMYHVTLEAACRASGFRGAVGVLRDLHGRGCALDVGNCNLVLQAVCD 193

Query: 242 K 242
           +
Sbjct: 194 Q 194


>gi|225451352|ref|XP_002274891.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 577

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 77/158 (48%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +FH+M T G   + V    + D L K+    EA+ L   I+     PD+  +T VI+   
Sbjct: 396 LFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMC 455

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG+ + A  +F  + + G+ PN +TY ++I GL         +L +A K   EM  KG 
Sbjct: 456 RAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQG-----LLAEASKLFGEMKRKGY 510

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            PN  TY  +   F+R  +      LLQ+M A+GF  D
Sbjct: 511 SPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSAD 548



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 84/189 (44%), Gaps = 33/189 (17%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
            +F KM  EG   N V    + + L K G T  A++L   ++     PDVV +T++I++ 
Sbjct: 150 HLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSL 209

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADG-----------NAKILGDA 181
               Q  +A  +F  M+  G++P+ +TY  LI  L    +            N+KI+ + 
Sbjct: 210 CKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNV 269

Query: 182 QKY------------LME-------MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
             +            +ME       M+ +G+ PN  TY A+ +      ++DEA  +   
Sbjct: 270 VIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDT 329

Query: 223 MKAKGFVPD 231
           M  KGF PD
Sbjct: 330 MVCKGFAPD 338



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 66/137 (48%), Gaps = 5/137 (3%)

Query: 95  DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           DAL K+G   EA  +   +  +G  P+VV + A+++ +    +  EA++VF  M+  G A
Sbjct: 277 DALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFA 336

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
           P+  +Y+ LI G         + +  A     EM  K + PN  TY+ +        ++ 
Sbjct: 337 PDVVSYSTLINGYC-----KIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQ 391

Query: 215 EARGLLQQMKAKGFVPD 231
           +A  L  +M  +G +PD
Sbjct: 392 DAIALFHEMVTRGQIPD 408



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 14/158 (8%)

Query: 79  HKMRTEGL------TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           H+M + G+       N  +  F  L + G    A  + A+I   GH P++     +I   
Sbjct: 83  HQMDSFGIPPNIYTLNILINSFCHLQRLGF---AFSVLAKILKLGHQPNIATFNTLIRGL 139

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+  E L +F +M+  G  PN  TY  LI GL      +A I     + L  M    
Sbjct: 140 CVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAI-----RLLRSMEQGN 194

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
            +P+   YT++ ++  + ++V +A  L  +M  +G  P
Sbjct: 195 CQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISP 232



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 82/182 (45%), Gaps = 10/182 (5%)

Query: 55  PPYDPFKKVVDEEPTDPRNLQ--EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQL 109
           P    +  ++D    D +  Q   +F +M  +G++ +      +  AL           L
Sbjct: 197 PDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTAL 256

Query: 110 FAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169
             ++ +   MP+VV  + V++A    G+  EA  V   M+  GV PN  TY  L+ G   
Sbjct: 257 LNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCL 316

Query: 170 AADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFV 229
            ++     + +A K    MV KG  P+  +Y+ +   + + Q++++A  L ++M  K  +
Sbjct: 317 RSE-----MDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELI 371

Query: 230 PD 231
           P+
Sbjct: 372 PN 373



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 63/151 (41%), Gaps = 6/151 (3%)

Query: 92  KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
           K+  +++K       L L  Q+   G  P++     +I ++    +   A  V  ++L  
Sbjct: 64  KLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILINSFCHLQRLGFAFSVLAKILKL 123

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           G  PN  T+  LI+GL          +G+      +M+G+G +PN  TY  +     +  
Sbjct: 124 GHQPNIATFNTLIRGLCVEGK-----IGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVG 178

Query: 212 KVDEARGLLQQMKAKGFVPDEKAVKEALIDK 242
               A  LL+ M+     PD   V  ++ID 
Sbjct: 179 STSAAIRLLRSMEQGNCQPD-VVVYTSIIDS 208



 Score = 44.7 bits (104), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 49/97 (50%), Gaps = 3/97 (3%)

Query: 75  QEIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +++F  + ++GL  N      M + L + GL  EA +LF ++K KG+ P+   +  +   
Sbjct: 464 RDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNLITRG 523

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
           +    +    +++   MLA G + +  T  VL++ L+
Sbjct: 524 FLRNNETLRGIQLLQEMLARGFSADVSTSTVLVEMLS 560



 Score = 42.4 bits (98), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 5/112 (4%)

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
           P +   T ++ +          L +  +M + G+ PN YT  +LI         + + LG
Sbjct: 57  PSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILINSFC-----HLQRLG 111

Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            A   L +++  G +PN  T+  +        K+ E   L  +M  +GF P+
Sbjct: 112 FAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPN 163


>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
 gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
          Length = 500

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 69/140 (49%), Gaps = 6/140 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +     K   + +AL++F Q+  +G  PDVV ++ +I+     G+ KEA+ +F RM+ SG
Sbjct: 156 LITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSG 215

Query: 153 -VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
              PN  TY  LI G           + +A   L  M   G  P+  TYT +   F +  
Sbjct: 216 SCMPNTVTYNSLISGFCRMGK-----MDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLA 270

Query: 212 KVDEARGLLQQMKAKGFVPD 231
           ++D+A  LL QM  KG  PD
Sbjct: 271 RLDDAYDLLNQMTRKGLTPD 290



 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 49/137 (35%), Positives = 73/137 (53%), Gaps = 10/137 (7%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS- 151
           M   L K   + EA++L  + + +   PDVV +T VI+      +  EA RV+ +ML   
Sbjct: 365 MIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEP 424

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           G  PN+ TY+ L+ GL      NA +L  A+ Y    + KG  PN GTY  + +AF +A 
Sbjct: 425 GCLPNSITYSTLVTGLC-----NAGMLDRARGY----IEKGCVPNIGTYNLLIDAFRKAN 475

Query: 212 KVDEARGLLQQMKAKGF 228
           + ++AR LL  M  +GF
Sbjct: 476 RDEDARELLDDMVQRGF 492



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 78/158 (49%), Gaps = 9/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQ-IKDKGHMPDVVAHTAVIEAY 132
           +F ++   G   + V    + D L K+G   EA+ LF + IK    MP+ V + ++I  +
Sbjct: 172 VFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGF 231

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+  EA+ +  RM  +G +P+  TY  L+ G    A      L DA   L +M  KG
Sbjct: 232 CRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLAR-----LDDAYDLLNQMTRKG 286

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           + P+  T+T++ +   R  ++ +A  +L +M+ K   P
Sbjct: 287 LTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSP 324



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 6/140 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L K     EA  L  ++   G +PD+  +T +I  +  + +  +ALRVF +++A G
Sbjct: 121 LISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARG 180

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG-MRPNAGTYTAVFEAFVRAQ 211
             P+  TY+ LI GL    +G  K   +A      M+  G   PN  TY ++   F R  
Sbjct: 181 FRPDVVTYSCLIDGL--CKEGRLK---EAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMG 235

Query: 212 KVDEARGLLQQMKAKGFVPD 231
           K+DEA  LL++M   G  PD
Sbjct: 236 KMDEAMNLLERMAETGSSPD 255



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 73/178 (41%), Gaps = 30/178 (16%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L K     +AL    ++  KG  PDV  +TAVI A     +  EA +    M    
Sbjct: 17  LIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRN 76

Query: 153 VAPNAYTYAVLIKGLA---------------------AAADGNAKILG--------DAQK 183
           + PN  TY VLI GL                       A   N+ I G        +A  
Sbjct: 77  LTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGLCKAERASEAYD 136

Query: 184 YLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
            L EMV  G  P+  TYT +   F +++K D+A  + +Q+ A+GF PD       LID
Sbjct: 137 LLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPD-VVTYSCLID 193



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 6/134 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +     + G   EA+ L  ++ + G  PDVV +T ++  +    +  +A  +  +M   G
Sbjct: 227 LISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKG 286

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+  T+  L+ GL          L DA   L EM  K   P   TY  + + + RA +
Sbjct: 287 LTPDVVTFTSLMDGLC-----RENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQ 341

Query: 213 VDEARG-LLQQMKA 225
           ++EAR  +L++M  
Sbjct: 342 LEEARKFMLEEMDC 355


>gi|147771991|emb|CAN69054.1| hypothetical protein VITISV_022964 [Vitis vinifera]
          Length = 586

 Score = 85.9 bits (211), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 77/158 (48%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +FH+M T G   + V    + D L K+    EA+ L   I+     PD+  +T VI+   
Sbjct: 405 LFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMC 464

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG+ + A  +F  + + G+ PN +TY ++I GL         +L +A K   EM  KG 
Sbjct: 465 RAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQG-----LLAEASKLFGEMKRKGY 519

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            PN  TY  +   F+R  +      LLQ+M A+GF  D
Sbjct: 520 SPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSAD 557



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 84/189 (44%), Gaps = 33/189 (17%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
            +F KM  EG   N V    + + L K G T  A++L   ++     PDVV +T++I++ 
Sbjct: 159 HLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSL 218

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADG-----------NAKILGDA 181
               Q  +A  +F  M+  G++P+ +TY  LI  L    +            N+KI+ + 
Sbjct: 219 CKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNV 278

Query: 182 QKY------------LME-------MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
             +            +ME       M+ +G+ PN  TY A+ +      ++DEA  +   
Sbjct: 279 VIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDT 338

Query: 223 MKAKGFVPD 231
           M  KGF PD
Sbjct: 339 MVCKGFAPD 347



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 66/137 (48%), Gaps = 5/137 (3%)

Query: 95  DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           DAL K+G   EA  +   +  +G  P+VV + A+++ +    +  EA++VF  M+  G A
Sbjct: 286 DALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFA 345

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
           P+  +Y+ LI G         + +  A     EM  K + PN  TY+ +        ++ 
Sbjct: 346 PDVVSYSTLINGYC-----KIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQ 400

Query: 215 EARGLLQQMKAKGFVPD 231
           +A  L  +M  +G +PD
Sbjct: 401 DAIALFHEMVTRGQIPD 417



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 14/158 (8%)

Query: 79  HKMRTEGL------TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           H+M + G+       N  +  F  L + G    A  + A+I   GH P++     +I   
Sbjct: 92  HQMDSFGIPPNIYTLNILINSFCHLQRLGF---AFSVLAKILKLGHQPNIATFNTLIRGL 148

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+  E L +F +M+  G  PN  TY  LI GL      +A I     + L  M    
Sbjct: 149 CVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAI-----RLLRSMEQGN 203

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
            +P+   YT++ ++  + ++V +A  L  +M  +G  P
Sbjct: 204 CQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISP 241



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 82/182 (45%), Gaps = 10/182 (5%)

Query: 55  PPYDPFKKVVDEEPTDPRNLQ--EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQL 109
           P    +  ++D    D +  Q   +F +M  +G++ +      +  AL           L
Sbjct: 206 PDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTAL 265

Query: 110 FAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169
             ++ +   MP+VV  + V++A    G+  EA  V   M+  GV PN  TY  L+ G   
Sbjct: 266 LNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCL 325

Query: 170 AADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFV 229
            ++     + +A K    MV KG  P+  +Y+ +   + + Q++++A  L ++M  K  +
Sbjct: 326 RSE-----MDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELI 380

Query: 230 PD 231
           P+
Sbjct: 381 PN 382



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 63/151 (41%), Gaps = 6/151 (3%)

Query: 92  KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
           K+  +++K       L L  Q+   G  P++     +I ++    +   A  V  ++L  
Sbjct: 73  KLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILINSFCHLQRLGFAFSVLAKILKL 132

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           G  PN  T+  LI+GL          +G+      +M+G+G +PN  TY  +     +  
Sbjct: 133 GHQPNIATFNTLIRGLCVEGK-----IGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVG 187

Query: 212 KVDEARGLLQQMKAKGFVPDEKAVKEALIDK 242
               A  LL+ M+     PD   V  ++ID 
Sbjct: 188 STSAAIRLLRSMEQGNCQPD-VVVYTSIIDS 217



 Score = 44.7 bits (104), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 49/97 (50%), Gaps = 3/97 (3%)

Query: 75  QEIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +++F  + ++GL  N      M + L + GL  EA +LF ++K KG+ P+   +  +   
Sbjct: 473 RDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNLITRG 532

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
           +    +    +++   MLA G + +  T  VL++ L+
Sbjct: 533 FLRNNETLRGIQLLQEMLARGFSADVSTSTVLVEMLS 569



 Score = 42.4 bits (98), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 5/112 (4%)

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
           P +   T ++ +          L +  +M + G+ PN YT  +LI         + + LG
Sbjct: 66  PSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILINSFC-----HLQRLG 120

Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            A   L +++  G +PN  T+  +        K+ E   L  +M  +GF P+
Sbjct: 121 FAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPN 172


>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
 gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
          Length = 500

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 69/140 (49%), Gaps = 6/140 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +     K   + +AL++F Q+  +G  PDVV ++ +I+     G+ KEA+ +F RM+ SG
Sbjct: 156 LITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSG 215

Query: 153 -VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
              PN  TY  LI G           + +A   L  M   G  P+  TYT +   F +  
Sbjct: 216 SCMPNTVTYNSLISGFCRMGK-----MDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLA 270

Query: 212 KVDEARGLLQQMKAKGFVPD 231
           ++D+A  LL QM  KG  PD
Sbjct: 271 RLDDAYDLLNQMTRKGLTPD 290



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/137 (36%), Positives = 73/137 (53%), Gaps = 10/137 (7%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS- 151
           M   L K   + EA++L  + + +   PDVV +T VI+      +  EA RV+ +ML   
Sbjct: 365 MIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEP 424

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           G  PN+ TY+ LI GL      NA +L  A+ Y    + KG  PN GTY  + +AF +A 
Sbjct: 425 GCLPNSITYSTLITGLC-----NAGMLDRARGY----IEKGCVPNIGTYNLLIDAFRKAN 475

Query: 212 KVDEARGLLQQMKAKGF 228
           + ++AR LL  M  +GF
Sbjct: 476 RDEDARELLDDMVQRGF 492



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 78/158 (49%), Gaps = 9/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQ-IKDKGHMPDVVAHTAVIEAY 132
           +F ++   G   + V    + D L K+G   EA+ LF + IK    MP+ V + ++I  +
Sbjct: 172 VFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGF 231

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+  EA+ +  RM  +G +P+  TY  L+ G    A      L DA   L +M  KG
Sbjct: 232 CRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLAR-----LDDAYDLLNQMTRKG 286

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           + P+  T+T++ +   R  ++ +A  +L +M+ K   P
Sbjct: 287 LTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSP 324



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 6/140 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L K     EA  L  ++   G +PD+  +T +I  +  + +  +ALRVF +++A G
Sbjct: 121 LISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARG 180

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG-MRPNAGTYTAVFEAFVRAQ 211
             P+  TY+ LI GL    +G  K   +A      M+  G   PN  TY ++   F R  
Sbjct: 181 FRPDVVTYSCLIDGL--CKEGRLK---EAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMG 235

Query: 212 KVDEARGLLQQMKAKGFVPD 231
           K+DEA  LL++M   G  PD
Sbjct: 236 KMDEAMNLLERMAETGSSPD 255



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 73/178 (41%), Gaps = 30/178 (16%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L K     +AL    ++  KG  PDV  +TAVI A     +  EA +    M    
Sbjct: 17  LIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRN 76

Query: 153 VAPNAYTYAVLIKGLA---------------------AAADGNAKILG--------DAQK 183
           + PN  TY VLI GL                       A   N+ I G        +A  
Sbjct: 77  LTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGLCKAERASEAYD 136

Query: 184 YLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
            L EMV  G  P+  TYT +   F +++K D+A  + +Q+ A+GF PD       LID
Sbjct: 137 LLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPD-VVTYSCLID 193



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 6/134 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +     + G   EA+ L  ++ + G  PDVV +T ++  +    +  +A  +  +M   G
Sbjct: 227 LISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKG 286

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+  T+  L+ GL          L DA   L EM  K   P   TY  + + + RA +
Sbjct: 287 LTPDVVTFTSLMDGLC-----RENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQ 341

Query: 213 VDEARG-LLQQMKA 225
           ++EAR  +L++M  
Sbjct: 342 LEEARKFMLEEMDC 355


>gi|356532720|ref|XP_003534919.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g22470, mitochondrial-like [Glycine max]
          Length = 468

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 75/149 (50%), Gaps = 8/149 (5%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L KD L +EA  L++++  +   P+V+ +  +I A+  AGQ   A  +   M+   
Sbjct: 156 IIDGLCKDKLVNEAYDLYSEMDAREIFPNVITYNTLICAFCLAGQLMGAFSLLHEMILKN 215

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+ YT+++LI  L            +A++    MV  G+ PN  +Y  +     + ++
Sbjct: 216 INPDVYTFSILIDALCKEGK-------NAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKR 268

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALID 241
           VDEA  LL++M  K  VPD      +LID
Sbjct: 269 VDEAMNLLREMLHKNMVPD-TVTYNSLID 296



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 8/159 (5%)

Query: 74  LQEIFHK-MRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           L+E+ HK M  + +T N+  + D L K G    AL L  ++  +G   DVV +T++++A 
Sbjct: 276 LREMLHKNMVPDTVTYNS--LIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDAL 333

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
                  +A  +FM+M   G+ P  YTY  LI GL          L +AQ+    ++ KG
Sbjct: 334 CKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGR-----LKNAQELFQHLLVKG 388

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              +  TYT +     +    DEA  +  +M+  G +P+
Sbjct: 389 CCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPN 427



 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 80/182 (43%), Gaps = 8/182 (4%)

Query: 53  LPPPYDPFKKVVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQL 109
           + P    F  ++D    + +N ++IFH M   G+  N      M + L K     EA+ L
Sbjct: 216 INPDVYTFSILIDALCKEGKNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNL 275

Query: 110 FAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169
             ++  K  +PD V + ++I+    +G+   AL +   M   G   +  TY  L+  L  
Sbjct: 276 LREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCK 335

Query: 170 AADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFV 229
             +     L  A    M+M  +G++P   TYTA+ +   +  ++  A+ L Q +  KG  
Sbjct: 336 NQN-----LDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCC 390

Query: 230 PD 231
            D
Sbjct: 391 ID 392



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 67/137 (48%), Gaps = 5/137 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DAL K+    +A  LF ++K++G  P +  +TA+I+     G+ K A  +F  +L  G
Sbjct: 329 LLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKG 388

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
              + +TY V+I GL         +  +A     +M   G  PNA T+  +  +     +
Sbjct: 389 CCIDVWTYTVMISGLCKEG-----MFDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDE 443

Query: 213 VDEARGLLQQMKAKGFV 229
            D+A  LL +M AKG +
Sbjct: 444 NDKAEKLLHEMIAKGLL 460


>gi|125544564|gb|EAY90703.1| hypothetical protein OsI_12306 [Oryza sativa Indica Group]
          Length = 644

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 79/159 (49%), Gaps = 8/159 (5%)

Query: 74  LQEIFHK-MRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           L E+F K    + +T N   + D   ++GL    ++L  Q+   G MPDV+ +T VI  +
Sbjct: 344 LSEMFQKDCPLDDVTFNI--LVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGF 401

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G   EA+ +   M + G  PN  +Y +++KGL +A         DA++ + +M+ +G
Sbjct: 402 CKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGR-----WVDAEELMSQMIQQG 456

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             PN  T+  +     +   V++A  LL+QM   G  PD
Sbjct: 457 CPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPD 495



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 76/162 (46%), Gaps = 8/162 (4%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+  +M  +G   N V    + + L K GL  +A++L  Q+   G  PD+++++ VI+ 
Sbjct: 446 EELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDG 505

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              AG+ +EAL +   M+  G++PN   Y+ +   L+     N  I     +    +   
Sbjct: 506 LGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVI-----QMFDNIKDT 560

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK 233
            +R +A  Y AV  +  +  + D A      M + G +P+E 
Sbjct: 561 TIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNES 602



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 81/181 (44%), Gaps = 16/181 (8%)

Query: 73  NLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           +++E+  +M       N V    +   L ++GL     ++ AQ+ + G  PD+  +  +I
Sbjct: 234 DVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATII 293

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
           +     G  + A  +  RM + G+ PN   Y  ++KGL +A         +A++ L EM 
Sbjct: 294 DGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWK-----EAEELLSEMF 348

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD--------EKAVKEALID 241
            K    +  T+  + + F +   VD    LL+QM + G +PD            KE LID
Sbjct: 349 QKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLID 408

Query: 242 K 242
           +
Sbjct: 409 E 409



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 67/120 (55%), Gaps = 8/120 (6%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+ + M  +G++ N +    +  ALS++G  ++ +Q+F  IKD     D V + AVI + 
Sbjct: 517 ELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSL 576

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               +   A+  F  M+++G  PN  TY +LIKGL  A++G AK   +AQ+ L E+  +G
Sbjct: 577 CKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGL--ASEGLAK---EAQELLSELCSRG 631



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 73/162 (45%), Gaps = 10/162 (6%)

Query: 74  LQEIFHKMRTEGLTNNAVKMF----DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           + E+  +M   G T + ++M+    D + K+G    A ++  ++   G  P+VV +  V+
Sbjct: 270 VHEVLAQMSEHGCTPD-IRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVL 328

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
           +   SA + KEA  +   M       +  T+ +L+            ++    + L +M+
Sbjct: 329 KGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNG-----LVDRVIELLEQML 383

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             G  P+  TYT V   F +   +DEA  LL+ M + G  P+
Sbjct: 384 SHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPN 425



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 81/222 (36%), Gaps = 37/222 (16%)

Query: 56  PYDPFKKVVDEEPTDP---RNLQEIFHKMRTEGLT---NNAVKMFDALSKDGLTHEALQL 109
           P  P   V+ E        RN   +   M  +G T    N   + +A+ + G   EA+ L
Sbjct: 144 PIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGL 203

Query: 110 FAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL-- 167
             ++   G   D+V++ AV++    A +  +   +   M+    APN  T+  LI  L  
Sbjct: 204 LRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCR 263

Query: 168 --------------------------AAAADGNAK--ILGDAQKYLMEMVGKGMRPNAGT 199
                                     A   DG  K   L  A + L  M   G++PN   
Sbjct: 264 NGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVC 323

Query: 200 YTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           Y  V +    A++  EA  LL +M  K   P +      L+D
Sbjct: 324 YNTVLKGLCSAERWKEAEELLSEMFQKD-CPLDDVTFNILVD 364



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 52/110 (47%), Gaps = 8/110 (7%)

Query: 122 VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDA 181
           VVA+ A++  Y  AGQ   A R+   +    V PNAYT+  +++GL          + DA
Sbjct: 79  VVAYNAMVAGYCRAGQLAAARRLAAAV---PVPPNAYTFFPVVRGLCTRGR-----IADA 130

Query: 182 QKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            + L EM  KG  P    Y  + EA  R+     +  +L+ M AKG   D
Sbjct: 131 LEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLD 180


>gi|108709396|gb|ABF97191.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215687193|dbj|BAG91758.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222625245|gb|EEE59377.1| hypothetical protein OsJ_11489 [Oryza sativa Japonica Group]
          Length = 644

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 79/159 (49%), Gaps = 8/159 (5%)

Query: 74  LQEIFHK-MRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           L E+F K    + +T N   + D   ++GL    ++L  Q+   G MPDV+ +T VI  +
Sbjct: 344 LSEMFQKDCPLDDVTFNI--LVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGF 401

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G   EA+ +   M + G  PN  +Y +++KGL +A         DA++ + +M+ +G
Sbjct: 402 CKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGR-----WVDAEELMSQMIQQG 456

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             PN  T+  +     +   V++A  LL+QM   G  PD
Sbjct: 457 CPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPD 495



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 76/162 (46%), Gaps = 8/162 (4%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+  +M  +G   N V    + + L K GL  +A++L  Q+   G  PD+++++ VI+ 
Sbjct: 446 EELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDG 505

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              AG+ +EAL +   M+  G++PN   Y+ +   L+     N  I     +    +   
Sbjct: 506 LGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVI-----QMFDNIKDT 560

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK 233
            +R +A  Y AV  +  +  + D A      M + G +P+E 
Sbjct: 561 TIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNES 602



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 81/181 (44%), Gaps = 16/181 (8%)

Query: 73  NLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           +++E+  +M       N V    +   L ++GL     ++ AQ+ + G  PD+  +  +I
Sbjct: 234 DVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATII 293

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
           +     G  + A  +  RM + G+ PN   Y  ++KGL +A         +A++ L EM 
Sbjct: 294 DGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWK-----EAEELLSEMF 348

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD--------EKAVKEALID 241
            K    +  T+  + + F +   VD    LL+QM + G +PD            KE LID
Sbjct: 349 QKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLID 408

Query: 242 K 242
           +
Sbjct: 409 E 409



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 67/120 (55%), Gaps = 8/120 (6%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+ + M  +G++ N +    +  ALS++G  ++ +Q+F  IKD     D V + AVI + 
Sbjct: 517 ELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSL 576

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               +   A+  F  M+++G  PN  TY +LIKGL  A++G AK   +AQ+ L E+  +G
Sbjct: 577 CKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGL--ASEGLAK---EAQELLSELCSRG 631



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 73/162 (45%), Gaps = 10/162 (6%)

Query: 74  LQEIFHKMRTEGLTNNAVKMF----DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           + E+  +M   G T + ++M+    D + K+G    A ++  ++   G  P+VV +  V+
Sbjct: 270 VHEVLAQMSEHGCTPD-IRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVL 328

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
           +   SA + KEA  +   M       +  T+ +L+            ++    + L +M+
Sbjct: 329 KGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNG-----LVDRVIELLEQML 383

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             G  P+  TYT V   F +   +DEA  LL+ M + G  P+
Sbjct: 384 SHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPN 425



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 81/222 (36%), Gaps = 37/222 (16%)

Query: 56  PYDPFKKVVDEEPTDP---RNLQEIFHKMRTEGLT---NNAVKMFDALSKDGLTHEALQL 109
           P  P   V+ E        RN   +   M  +G T    N   + +A+ + G   EA+ L
Sbjct: 144 PIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGL 203

Query: 110 FAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL-- 167
             ++   G   D+V++ AV++    A +  +   +   M+    APN  T+  LI  L  
Sbjct: 204 LRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCR 263

Query: 168 --------------------------AAAADGNAK--ILGDAQKYLMEMVGKGMRPNAGT 199
                                     A   DG  K   L  A + L  M   G++PN   
Sbjct: 264 NGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVC 323

Query: 200 YTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           Y  V +    A++  EA  LL +M  K   P +      L+D
Sbjct: 324 YNTVLKGLCSAERWKEAEELLSEMFQKD-CPLDDVTFNILVD 364



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 52/110 (47%), Gaps = 8/110 (7%)

Query: 122 VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDA 181
           VVA+ A++  Y  AGQ   A R+   +    V PNAYT+  +++GL          + DA
Sbjct: 79  VVAYNAMVAGYCRAGQLAAARRLAAAV---PVPPNAYTFFPVVRGLCTRGR-----IADA 130

Query: 182 QKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            + L EM  KG  P    Y  + EA  R+     +  +L+ M AKG   D
Sbjct: 131 LEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLD 180


>gi|15225790|ref|NP_180247.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100043|sp|O81028.1|PP171_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g26790, mitochondrial; Flags: Precursor
 gi|3426046|gb|AAC32245.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|330252793|gb|AEC07887.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 799

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/141 (34%), Positives = 80/141 (56%), Gaps = 7/141 (4%)

Query: 94  FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGV 153
           FDALSK G   EA +L  ++KD+G +PDV+ +T +I+ Y   G+  +AL +   M+ +G+
Sbjct: 395 FDALSKLGRVEEAFELLQEMKDRGIVPDVINYTTLIDGYCLQGKVVDALDLIDEMIGNGM 454

Query: 154 APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV 213
           +P+  TY VL+ GL  A +G+ +   +  +    M  +G +PNA T + + E    A+KV
Sbjct: 455 SPDLITYNVLVSGL--ARNGHEE---EVLEIYERMKAEGPKPNAVTNSVIIEGLCFARKV 509

Query: 214 DEARGLLQQMKAKGFVPDEKA 234
            EA      ++ K   P+ KA
Sbjct: 510 KEAEDFFSSLEQK--CPENKA 528



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 48/193 (24%), Positives = 79/193 (40%), Gaps = 28/193 (14%)

Query: 72  RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R  Q +F  M   GL  +      M     +     +A  LF  +K +G  PDVV +T +
Sbjct: 608 REAQVLFDTMVERGLIPDLFTYTIMIHTYCRLNELQKAESLFEDMKQRGIKPDVVTYTVL 667

Query: 129 IEAY---------ASAGQG----KEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNA 175
           ++ Y           + QG    ++A  V     A+G+  +   Y VLI       D   
Sbjct: 668 LDRYLKLDPEHHETCSVQGEVGKRKASEVLREFSAAGIGLDVVCYTVLI-------DRQC 720

Query: 176 KI--LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK 233
           K+  L  A +    M+  G+ P+   YT +  ++ R   +D A  L+ ++  K  +P E 
Sbjct: 721 KMNNLEQAAELFDRMIDSGLEPDMVAYTTLISSYFRKGYIDMAVTLVTELSKKYNIPSES 780

Query: 234 ---AVKEALIDKR 243
              AVK A +  +
Sbjct: 781 FEAAVKSAALKAK 793



 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/148 (25%), Positives = 63/148 (42%), Gaps = 8/148 (5%)

Query: 92  KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
           KM  A  K     EA  LF  + ++G +PD+  +T +I  Y    + ++A  +F  M   
Sbjct: 596 KMIGAFCKLNNVREAQVLFDTMVERGLIPDLFTYTIMIHTYCRLNELQKAESLFEDMKQR 655

Query: 152 GVAPNAYTYAVLIK---GLAAAADGNAKILGD-----AQKYLMEMVGKGMRPNAGTYTAV 203
           G+ P+  TY VL+     L         + G+     A + L E    G+  +   YT +
Sbjct: 656 GIKPDVVTYTVLLDRYLKLDPEHHETCSVQGEVGKRKASEVLREFSAAGIGLDVVCYTVL 715

Query: 204 FEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +   +   +++A  L  +M   G  PD
Sbjct: 716 IDRQCKMNNLEQAAELFDRMIDSGLEPD 743



 Score = 45.1 bits (105), Expect = 0.027,   Method: Composition-based stats.
 Identities = 44/198 (22%), Positives = 81/198 (40%), Gaps = 60/198 (30%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE---------------------- 130
           +   L+++G   E L+++ ++K +G  P+ V ++ +IE                      
Sbjct: 464 LVSGLARNGHEEEVLEIYERMKAEGPKPNAVTNSVIIEGLCFARKVKEAEDFFSSLEQKC 523

Query: 131 ---------AYASAGQGKEALRVFMRM---LASGVAPNAYTYAVLIKG-LAAAAD----- 172
                     Y  AG  K+A + F+R+   L   V    + +++ I+G L  A D     
Sbjct: 524 PENKASFVKGYCEAGLSKKAYKAFVRLEYPLRKSVYIKLF-FSLCIEGYLEKAHDVLKKM 582

Query: 173 -------GNA---KILG---------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV 213
                  G +   K++G         +AQ     MV +G+ P+  TYT +   + R  ++
Sbjct: 583 SAYRVEPGRSMCGKMIGAFCKLNNVREAQVLFDTMVERGLIPDLFTYTIMIHTYCRLNEL 642

Query: 214 DEARGLLQQMKAKGFVPD 231
            +A  L + MK +G  PD
Sbjct: 643 QKAESLFEDMKQRGIKPD 660



 Score = 42.4 bits (98), Expect = 0.18,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 5/126 (3%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A  +  ++++ G   DV A  AVI+ Y       EAL    +ML  G+  N    +++++
Sbjct: 302 AESVIIEMEEIGFGLDVYACLAVIDRYCKNMNLPEALGFLDKMLGKGLKVNCVIVSLILQ 361

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
                      +  +A +   E     +  +   Y   F+A  +  +V+EA  LLQ+MK 
Sbjct: 362 CYC-----KMDMCLEALEKFKEFRDMNIFLDRVCYNVAFDALSKLGRVEEAFELLQEMKD 416

Query: 226 KGFVPD 231
           +G VPD
Sbjct: 417 RGIVPD 422


>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
 gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
          Length = 552

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 80/160 (50%), Gaps = 9/160 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQI-KDKGHMPDVVAHTAVIEA 131
           EI   M   G   NA+    + D L K G   EAL  F ++ +D+   P V+A++A+I+ 
Sbjct: 369 EILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDG 428

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              AG+  EA     RM+ +G  P+  T+++LI GL  A   +  +     +    M  +
Sbjct: 429 LCKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGL-----ELFRGMAER 483

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G  P+  TY  + +   RA +VDEA  L QQM++ G  PD
Sbjct: 484 GCVPDMVTYATLVDRLCRASRVDEAFDLFQQMRSDGLSPD 523



 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 87/187 (46%), Gaps = 10/187 (5%)

Query: 50  KSKLPPPYDPFKKVVDEEPTDPRNL--QEIFHKMRTEGLTNNAVK---MFDALSKDGLTH 104
           +S L P    F  V+D    + R L    +F +    G   N V    + D LSK     
Sbjct: 201 ESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMD 260

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EALQL A++ + G   + V ++ V++     G+ ++A+ V  +M  +G  P+A TY  LI
Sbjct: 261 EALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLI 320

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            G         + L +A   L EM+  G  P+  TYT +     R+ + DEA  +L  M 
Sbjct: 321 DGFF-----KRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMA 375

Query: 225 AKGFVPD 231
           A+G  P+
Sbjct: 376 ARGCAPN 382



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 79/169 (46%), Gaps = 8/169 (4%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++  KM   G   N V    + D L K G   +A+ +  Q++D G +PD V +  +I+ +
Sbjct: 264 QLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGF 323

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               + +EA+ +   ML +G  P+  TY  L  GL  +         +A + L  M  +G
Sbjct: 324 FKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGR-----FDEAVEILDYMAARG 378

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
             PNA TY+++ +   +A +V EA G  ++M     V        ALID
Sbjct: 379 CAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALID 427



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 77/158 (48%), Gaps = 7/158 (4%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +MR  G   +AV    + D   K     EA+ L  ++ + G  P VV +T +     
Sbjct: 300 VLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLC 359

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            +G+  EA+ +   M A G APNA TY+ ++ GL  A     + LG  +K   + V   +
Sbjct: 360 RSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGR-VTEALGYFEKMARDEV---V 415

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            P+   Y+A+ +   +A K+DEA   L++M   G +PD
Sbjct: 416 APHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPD 453



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 64/140 (45%), Gaps = 6/140 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M D L K     +A+ LF Q+ DK   PDVV + A+I+      + KEA  +F    A G
Sbjct: 1   MIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKG 60

Query: 153 VAPNAYTYAVLIKGLAAAAD-GNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
             P   TY  +I GL       NA  L D        +  G RP   TY+ + +   R  
Sbjct: 61  CHPTVVTYNTMIDGLCKCGRIENALTLYDDMA-----IHFGFRPTVVTYSTLIDGLCRDH 115

Query: 212 KVDEARGLLQQMKAKGFVPD 231
           +VD+   LL++M  +G  P+
Sbjct: 116 EVDKGCKLLEEMAGRGCAPN 135



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 31/139 (22%), Positives = 68/139 (48%), Gaps = 3/139 (2%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L +D    +  +L  ++  +G  P+ V +  ++ A    G+ KEA  +  +M A+G
Sbjct: 107 LIDGLCRDHEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANG 166

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P   T+ ++IKGL    +  A      + +++E    G+ P+  T+ +V +   + Q+
Sbjct: 167 CPPELITFGLIIKGLCKEGEIEAAFRVVDEMFMIE---SGLSPDVITFNSVLDGLCKEQR 223

Query: 213 VDEARGLLQQMKAKGFVPD 231
           + +A  + ++   +G  P+
Sbjct: 224 ILDAHNVFKRALERGCRPN 242


>gi|115477950|ref|NP_001062570.1| Os09g0110200 [Oryza sativa Japonica Group]
 gi|46806362|dbj|BAD17538.1| PPR protein-like protein [Oryza sativa Japonica Group]
 gi|46806431|dbj|BAD17588.1| PPR protein-like protein [Oryza sativa Japonica Group]
 gi|113630803|dbj|BAF24484.1| Os09g0110200 [Oryza sativa Japonica Group]
          Length = 794

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 49/137 (35%), Positives = 73/137 (53%), Gaps = 5/137 (3%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
           A S  G   +A+Q F+++ +    P    +  +++A   +G    AL ++ RM+A+G AP
Sbjct: 146 AHSSAGRHADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALYNRMVAAGCAP 205

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           N  TY VL+ GL         + GDA K   EM+ +G+ PN   YT +  +   A K+DE
Sbjct: 206 NRATYNVLMDGLCKQG-----MAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDE 260

Query: 216 ARGLLQQMKAKGFVPDE 232
           A  LL  MK KG +PDE
Sbjct: 261 AVQLLGSMKDKGCLPDE 277



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 84/188 (44%), Gaps = 33/188 (17%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           ++++M   G   N      + D L K G+  +AL++F ++ D+G MP+V  +T ++ +  
Sbjct: 194 LYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLC 253

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTY----------------------------AVLIK 165
           +AG+  EA+++   M   G  P+  TY                            A+ +K
Sbjct: 254 NAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLK 313

Query: 166 GLAAAADG--NAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           G +   DG   A+   +   Y   M+ + + P+   YT +      A ++++A   L  M
Sbjct: 314 GYSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVM 373

Query: 224 KAKGFVPD 231
           K KGFVPD
Sbjct: 374 KKKGFVPD 381



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 47/170 (27%), Positives = 81/170 (47%), Gaps = 17/170 (10%)

Query: 79  HKMRTEGLTNNAVK-------MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           H +R+E L NN V        M   L K GL  EA+Q+F ++ + G  P V+ + A+I+ 
Sbjct: 402 HTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDG 461

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGD---------AQ 182
           +   G+ +EA  +F +M   G  P+ +    L       ++   K++ D         A 
Sbjct: 462 FYREGRLEEARMLFHKM-EMGNNPSLFLRLTLGANQVCDSESLRKLVHDMCQSGQVLKAY 520

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           K L  ++  G+ P+  TY  +     +A+ +D A  L ++++ KG  PDE
Sbjct: 521 KLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDE 570



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 49/176 (27%), Positives = 74/176 (42%), Gaps = 22/176 (12%)

Query: 77  IFHKMRTEG-------LTNNAVKMFDALSKDGLTHE---------ALQLFAQIKDKGHMP 120
           +FHKM           LT  A ++ D+ S   L H+         A +L   I D G +P
Sbjct: 474 LFHKMEMGNNPSLFLRLTLGANQVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVP 533

Query: 121 DVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGD 180
           DVV +  +I     A     A+R+F  +   G++P+  TY  LI GL  A   N     D
Sbjct: 534 DVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAHREN-----D 588

Query: 181 AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGL-LQQMKAKGFVPDEKAV 235
           A      ++  G  P+   Y ++  +  R +K+ +A  L L  +  K   P E  V
Sbjct: 589 AMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINLWLDYLPKKYNFPVESEV 644



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 50/226 (22%), Positives = 78/226 (34%), Gaps = 67/226 (29%)

Query: 84  EGLTNNAVKMFD-------------------ALSKDGLTHEALQLFAQIKDKGHMPDVVA 124
           +G+  +A+KMFD                   +L   G   EA+QL   +KDKG +PD V 
Sbjct: 220 QGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVT 279

Query: 125 HTAVIEAYASAGQGKEALR-----------------------------------VFMRML 149
           + A +      G+  EA +                                    +  ML
Sbjct: 280 YNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYYKTML 339

Query: 150 ASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
              ++P+   Y ++I+G A A       + DA  +L  M  KG  P+   Y  V +    
Sbjct: 340 ERNISPDVVLYTIMIRGCAEAGR-----IEDALSFLDVMKKKGFVPDTFCYNTVLKVLCD 394

Query: 210 AQKVDEARGLLQQMKAKGFVPDEKA--------VKEALIDKRGQGF 247
              ++ A  L  +M     V D            K  L+D+  Q F
Sbjct: 395 HGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIF 440


>gi|357442883|ref|XP_003591719.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|357501105|ref|XP_003620841.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480767|gb|AES61970.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495856|gb|AES77059.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 524

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 89/174 (51%), Gaps = 21/174 (12%)

Query: 86  LTNNAVKMF----DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEA 141
           L N  V M+    D+L K+ L  EA +L++Q+  K   PDVV  +A+I  +   GQ KEA
Sbjct: 183 LVNTNVVMYSTIIDSLCKEKLVTEAYELYSQMIVKKVSPDVVTFSALIYGFCMVGQFKEA 242

Query: 142 LRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK----ILG---------DAQKYLMEM 188
             +F  M+ + + P+  T+ +L+  L    +G+ K    +L          +  K++  +
Sbjct: 243 FGLFHEMVLTNINPDVCTFNILVDAL--CKEGSTKETKNVLAVMMKEVNQVNKAKHVFNI 300

Query: 189 VGK-GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           +GK  + P+  +YT + +   + + VDEA  L  +M+ KG  PD K    +LID
Sbjct: 301 IGKRRVTPDVHSYTIIIKRLCKIKMVDEALSLFNEMRCKGITPD-KVTYSSLID 353



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 79/173 (45%), Gaps = 15/173 (8%)

Query: 62  KVVDEEPTDPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGH 118
           K+VDE  +       +F++MR +G+T + V    + D L K      A +L  Q+  +G 
Sbjct: 324 KMVDEALS-------LFNEMRCKGITPDKVTYSSLIDGLCKSERISHAWELLDQMHARGQ 376

Query: 119 MPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKIL 178
             DV+ +T+ + A     Q  +A+ +  ++   G+ PN  TY +LI GL           
Sbjct: 377 PADVITYTSFLHALCKNHQVDKAVALVKKIKDQGIQPNINTYNILIDGLCKEGR-----F 431

Query: 179 GDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +AQ    +++ KG +    TY  +          DEA  LL++M+  G  PD
Sbjct: 432 ENAQVIFQDLLIKGYKVTVWTYNIMINGLCLEGLFDEAMTLLEKMEDNGCTPD 484



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 79/175 (45%), Gaps = 25/175 (14%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFA-------QIKDKGHM------- 119
           +FH+M    +  +      + DAL K+G T E   + A       Q+    H+       
Sbjct: 245 LFHEMVLTNINPDVCTFNILVDALCKEGSTKETKNVLAVMMKEVNQVNKAKHVFNIIGKR 304

Query: 120 ---PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK 176
              PDV ++T +I+         EAL +F  M   G+ P+  TY+ LI GL  +      
Sbjct: 305 RVTPDVHSYTIIIKRLCKIKMVDEALSLFNEMRCKGITPDKVTYSSLIDGLCKSER---- 360

Query: 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +  A + L +M  +G   +  TYT+   A  +  +VD+A  L++++K +G  P+
Sbjct: 361 -ISHAWELLDQMHARGQPADVITYTSFLHALCKNHQVDKAVALVKKIKDQGIQPN 414



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 68/141 (48%), Gaps = 5/141 (3%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
           AL K+    +A+ L  +IKD+G  P++  +  +I+     G+ + A  +F  +L  G   
Sbjct: 389 ALCKNHQVDKAVALVKKIKDQGIQPNINTYNILIDGLCKEGRFENAQVIFQDLLIKGYKV 448

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
             +TY ++I GL         +  +A   L +M   G  P+  TY  +  A  +  +  +
Sbjct: 449 TVWTYNIMINGLCLEG-----LFDEAMTLLEKMEDNGCTPDVVTYETIIRALFKNDENHK 503

Query: 216 ARGLLQQMKAKGFVPDEKAVK 236
           A  LL++M A+G + ++  ++
Sbjct: 504 AEKLLREMIARGLLEEKVEIR 524



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 71/158 (44%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           ++H+++   +T + V    + +     G    A  + A+I   G+ PD +  T +I+   
Sbjct: 70  LYHRLQLNAITPSIVTFNTVINCYCHLGEMDFAFSVLAKILKMGYHPDTITLTTLIKGLC 129

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G+  EAL     ++A G   N  +Y +LI GL    +  A     A + L ++ GK +
Sbjct: 130 LNGKVHEALHFHDHVIARGFRLNEVSYGILINGLCKMGETRA-----ALQVLRKIDGKLV 184

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             N   Y+ + ++  + + V EA  L  QM  K   PD
Sbjct: 185 NTNVVMYSTIIDSLCKEKLVTEAYELYSQMIVKKVSPD 222


>gi|449480434|ref|XP_004155892.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18950-like [Cucumis sativus]
          Length = 638

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 101/229 (44%), Gaps = 38/229 (16%)

Query: 53  LPPPYDPFKKVVD---EEPTDPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEA 106
           L P  D F K++    +E    R L E+ H M  +    +     ++ +   K+ +T +A
Sbjct: 294 LTPCNDAFNKLISGFCKEKNHHRVL-ELVHTMIVKNRNPDIFTYQEIINGFCKNWMTLQA 352

Query: 107 LQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKG 166
            ++F  +KD+G+ PD+V +T +I  +   GQ ++A +++  M+  G  PN Y+Y  LI G
Sbjct: 353 FEVFNALKDRGYAPDMVMYTTLIHGFCKMGQLEDASKLWFEMIDKGFLPNEYSYNTLIYG 412

Query: 167 LAAAAD----------------------GNAKILG--------DAQKYLMEMVGKGMRPN 196
                +                       N  ILG        +A  +  EM  K +  +
Sbjct: 413 FCKIGNLDEAMKLYKKMLDSGYKETTLSCNTLILGLCLHGRTDEAYDFFREMPCKNIVCD 472

Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
             TY  + + F R  KV ++  LL++++AKG  P   +    LI K  Q
Sbjct: 473 VITYNTLIQGFCREGKVLQSTDLLKELQAKGLQPSTSSYAH-LIQKLCQ 520



 Score = 46.2 bits (108), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 31/140 (22%), Positives = 55/140 (39%), Gaps = 5/140 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +  A   D     A ++  Q  + G  P   A   +I  +         L +   M+   
Sbjct: 269 LIQAFCNDNKVSRAYEILRQSLEDGLTPCNDAFNKLISGFCKEKNHHRVLELVHTMIVKN 328

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+ +TY  +I G       N   L  A +    +  +G  P+   YT +   F +  +
Sbjct: 329 RNPDIFTYQEIINGFCK----NWMTL-QAFEVFNALKDRGYAPDMVMYTTLIHGFCKMGQ 383

Query: 213 VDEARGLLQQMKAKGFVPDE 232
           +++A  L  +M  KGF+P+E
Sbjct: 384 LEDASKLWFEMIDKGFLPNE 403



 Score = 43.9 bits (102), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 29/139 (20%), Positives = 57/139 (41%), Gaps = 5/139 (3%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L   G T EA   F ++  K  + DV+ +  +I+ +   G+  ++  +   + A G+ P
Sbjct: 447 GLCLHGRTDEAYDFFREMPCKNIVCDVITYNTLIQGFCREGKVLQSTDLLKELQAKGLQP 506

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  +YA LI+ L          + +A++   +M  +G++P   T   +         V E
Sbjct: 507 STSSYAHLIQKLCQLGS-----VQEAKEMWNDMHNRGLQPMVCTRDHIISGLCEQGYVVE 561

Query: 216 ARGLLQQMKAKGFVPDEKA 234
               L  M      P ++ 
Sbjct: 562 GMEWLITMLKSNLKPQKET 580


>gi|255660940|gb|ACU25639.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 484

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 84/168 (50%), Gaps = 12/168 (7%)

Query: 78  FHKMRTEGL-----TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           F+KM +EG+     T N +     LS  G    A + F  +K +  MPDVV +  ++  Y
Sbjct: 138 FNKMLSEGIEPTRHTFNVMMWGFFLS--GKVETANRFFEDMKSREIMPDVVTYNTMVNGY 195

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               + +EA + F+ M    + P   TY  LIKG  +        + DA +++ EM G G
Sbjct: 196 CRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDR-----VDDALRFVEEMKGFG 250

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
           M+PNA TY+ +      A+K+ EAR +L++M  K   P + ++   LI
Sbjct: 251 MKPNAITYSTLLPGLCNAEKMSEARSILKEMVDKYIAPTDNSIFMRLI 298



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 62/120 (51%), Gaps = 6/120 (5%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA + F ++K +   P VV +T +I+ Y S  +  +ALR    M   G+ PNA TY+ L+
Sbjct: 203 EAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDRVDDALRFVEEMKGFGMKPNAITYSTLL 262

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQKVDEARGLLQQM 223
            GL      NA+ + +A+  L EMV K + P +   +  +     +A  +D A  +L+ M
Sbjct: 263 PGLC-----NAEKMSEARSILKEMVDKYIAPTDNSIFMRLISGQCKAGDLDAAANVLKAM 317



 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 66/141 (46%), Gaps = 5/141 (3%)

Query: 91  VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           +K+ + L +    + A  +   +  KG   D      +I++Y  AG  +E++++F +M  
Sbjct: 49  LKIIEILGRASKLNHARCILLDMPKKGLEWDEDLWVLMIDSYGKAGIVQESVKMFQKMEE 108

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
            GV     +Y  L K +     G   +   A++Y  +M+ +G+ P   T+  +   F  +
Sbjct: 109 LGVERTIKSYDALFKVILRR--GRYMM---AKRYFNKMLSEGIEPTRHTFNVMMWGFFLS 163

Query: 211 QKVDEARGLLQQMKAKGFVPD 231
            KV+ A    + MK++  +PD
Sbjct: 164 GKVETANRFFEDMKSREIMPD 184


>gi|449531171|ref|XP_004172561.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 761

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 86/162 (53%), Gaps = 10/162 (6%)

Query: 77  IFHKMRTEGL----TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +F++M   G+    T ++V + D L K G   EA +L   +  +G +PDVV  T +++  
Sbjct: 359 LFNEMLDVGIQPDVTTSSV-LIDMLCKKGKVIEANKLLEVVIQRGCIPDVVTCTTLVKGL 417

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV--- 189
               +  +A ++F++M   G  PN  T A L+KGL  +  GN KI  +  K ++      
Sbjct: 418 CMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQS--GNIKIALELHKNMLSDTSPY 475

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G   +PNA +Y+ + +   +  + DEAR L ++MKA G +PD
Sbjct: 476 GINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPD 517



 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 77/139 (55%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K G   EA +LF ++K  G +PDV+++T++I  +  +G+ K+A  +F  M+  G
Sbjct: 489 IIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIG 548

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V P+  T++VLI  L        K++ +A + L  M+ +G  PN  TYT + +      +
Sbjct: 549 VQPDVTTFSVLIDMLCK----EGKVI-EANELLEVMIQRGCIPNTVTYTTLVKGLCMNDR 603

Query: 213 VDEARGLLQQMKAKGFVPD 231
           + EA  L  +M+  G +PD
Sbjct: 604 ISEATQLFMKMQKLGCLPD 622



 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 83/164 (50%), Gaps = 14/164 (8%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F++M   G+ ++      + D L K+G   EA +L   +  +G + D+V ++ +I+   
Sbjct: 178 LFNEMLDVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLC 237

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNA------KILGDAQKYLME 187
              +  EA R+FM M   G  P+A  Y  L+KGL    + N       ++L D  +Y   
Sbjct: 238 MKHRISEATRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQLHQEMLNDTGRY--- 294

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             G   +P   +Y+ + +   + ++ DEAR L ++MKA+G +PD
Sbjct: 295 --GIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGIMPD 336



 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 75/145 (51%), Gaps = 11/145 (7%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K+G   EA +L   +  +G +P+ V +T +++      +  EA ++FM+M   G
Sbjct: 559 LIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLG 618

Query: 153 VAPNAYTYAVLIKGLA------AAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEA 206
             P+  TY  L+KGL        A + + K+L D  +Y     G   +P+  +Y+ + + 
Sbjct: 619 CLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQY-----GTNFKPDVISYSIIIDG 673

Query: 207 FVRAQKVDEARGLLQQMKAKGFVPD 231
             +  + DEAR L ++MKA G +P+
Sbjct: 674 LCKHGREDEARELFKEMKALGVIPN 698



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 72/145 (49%), Gaps = 11/145 (7%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   K+G   EA +L   +  +G + D+V ++ +I+      +  EA ++FM M   G
Sbjct: 16  LIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKKLG 75

Query: 153 VAPNAYTYAVLIKGLAAAADGNA------KILGDAQKYLMEMVGKGMRPNAGTYTAVFEA 206
             P+A  Y  L+KGL      N       ++L D  +Y     G   +P   +Y+ + + 
Sbjct: 76  CRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQY-----GIKCKPTLVSYSIIIDG 130

Query: 207 FVRAQKVDEARGLLQQMKAKGFVPD 231
             + ++ DEAR L ++MKA+G +PD
Sbjct: 131 LCKDRREDEARELFKEMKAQGMMPD 155



 Score = 73.9 bits (180), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 75/139 (53%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L KD    EA +LF ++K +G MPDV+++T +I  +  +G+ ++A  +F  ML  G
Sbjct: 308 IIDGLCKDRREDEARELFKEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVG 367

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+  T +VLI  L        K++ +A K L  ++ +G  P+  T T + +      +
Sbjct: 368 IQPDVTTSSVLIDMLCK----KGKVI-EANKLLEVVIQRGCIPDVVTCTTLVKGLCMKHR 422

Query: 213 VDEARGLLQQMKAKGFVPD 231
           + +A  L  +M+  G +P+
Sbjct: 423 ISKATQLFLKMQKLGCMPN 441



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 79/159 (49%), Gaps = 16/159 (10%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQ-IKDKGHM-----PDVVAHT 126
           ++F KM+  G   + V    +   L + G    AL+L  + + D G       PDV++++
Sbjct: 609 QLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYS 668

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
            +I+     G+  EA  +F  M A GV PN  +Y  LI G   +       L DA+    
Sbjct: 669 IIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGK-----LEDAKHLFN 723

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           EMV +G++ NA TY+ +   F +  ++D+A  L Q+M+A
Sbjct: 724 EMVDQGVQLNAVTYSVMIHGFCKEGQIDKA--LFQKMEA 760



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 73/139 (52%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L KD    EA +LF ++K +G MPDV+++T++I  +  +G+ ++A  +F  ML  G
Sbjct: 127 IIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNEMLDVG 186

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +  +  T ++LI  L        K++ +A + L  M+ +G   +  TY+ + +      +
Sbjct: 187 IRSDVTTSSMLIDILCK----EGKVI-EANELLEVMIQRGCILDIVTYSTLIKGLCMKHR 241

Query: 213 VDEARGLLQQMKAKGFVPD 231
           + EA  L   M+  G  PD
Sbjct: 242 ISEATRLFMSMQKLGCRPD 260



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 86/184 (46%), Gaps = 16/184 (8%)

Query: 55  PPYDPFKKVVDEEPTDPRNLQ--EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQL 109
           P    F  ++D    + + ++  E+   M   G   N V    +   L  +    EA QL
Sbjct: 551 PDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQL 610

Query: 110 FAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA------SGVAPNAYTYAVL 163
           F +++  G +PDVV +  +++     G  K AL +  +ML+      +   P+  +Y+++
Sbjct: 611 FMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSII 670

Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           I GL      +     +A++   EM   G+ PN  +YT++   F R+ K+++A+ L  +M
Sbjct: 671 IDGLCKHGRED-----EARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEM 725

Query: 224 KAKG 227
             +G
Sbjct: 726 VDQG 729


>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
 gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
          Length = 1116

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/141 (35%), Positives = 72/141 (51%), Gaps = 9/141 (6%)

Query: 94  FDALSKDGLTHEALQLFAQIKDKGHM---PDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
            D L K  +T EA +L   ++D G +   PD V  + +I+     GQ  EA  VF  M+A
Sbjct: 330 LDGLCKQSMTAEACELMRSLRD-GSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIA 388

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
            G  PN  TY  L+ GL  A       +  A   +  MV KG+ P+  TY+ + +AF +A
Sbjct: 389 GGYVPNVITYNALVNGLCKADK-----MERAHAMIESMVDKGVTPDVITYSVLVDAFCKA 443

Query: 211 QKVDEARGLLQQMKAKGFVPD 231
            +VDEA  LL  M ++G  P+
Sbjct: 444 SRVDEALELLHGMASRGCTPN 464



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/141 (34%), Positives = 70/141 (49%), Gaps = 9/141 (6%)

Query: 94  FDALSKDGLTHEALQLFAQIKDKGHM---PDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
            D L K  +  EA +L   ++D G +   PD V  + +I+     GQ  EA  VF  M+A
Sbjct: 824 LDGLCKQSMMAEACELMRSLRD-GSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIA 882

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
            G  PN  TY VL+ GL          +  A   +  MV KG+ P+  TY+ + +AF +A
Sbjct: 883 GGYVPNVVTYNVLMNGLCKTDK-----MERAHAMIESMVDKGVTPDVITYSVLVDAFCKA 937

Query: 211 QKVDEARGLLQQMKAKGFVPD 231
             VDEA  LL  M ++G  P+
Sbjct: 938 SHVDEALELLHGMASRGCTPN 958



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/134 (31%), Positives = 69/134 (51%), Gaps = 8/134 (5%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
           AL +   T +ALQL +++K  G  PD V +  +++    +GQ ++A+ V   M+  G  P
Sbjct: 681 ALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHP 740

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR---PNAGTYTAVFEAFVRAQK 212
           +  TY  LI  L  A D     L +A++   +M  +  R   PN  TY+ +     +  +
Sbjct: 741 DVVTYNTLIDSLCKAGD-----LEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCKVGR 795

Query: 213 VDEARGLLQQMKAK 226
           +DEAR L+Q+M  K
Sbjct: 796 IDEARELIQEMMRK 809



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 40/138 (28%), Positives = 72/138 (52%), Gaps = 7/138 (5%)

Query: 95  DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           + LSK G    ALQ++ ++ +   +PD V    +I     AG  ++A  +F  M+A  + 
Sbjct: 540 NGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQ 599

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK-GMRPNAGTYTAVFEAFVRAQKV 213
           P+  T+  LI GL  A         +A + +++++G  G+ PN  TY A+     ++ ++
Sbjct: 600 PDVMTFGALIDGLCKAGQ------VEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRI 653

Query: 214 DEARGLLQQMKAKGFVPD 231
           +EA   L++M + G VPD
Sbjct: 654 EEACQFLEEMVSSGCVPD 671



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 11/155 (7%)

Query: 76  EIFH-KMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           EIF  +M  +G+    V    + + L K       ++LF ++ ++GH PDVV +  +I++
Sbjct: 201 EIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVERGHHPDVVTYNTLIDS 260

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              AG  +EA R+   M +    PN  TY+VLI GL          + +A++ + EM  K
Sbjct: 261 LCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLCKVGR-----IDEARELIQEMTRK 315

Query: 192 G--MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
              + PN  TY +  +   +     EA  L++ ++
Sbjct: 316 SCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLR 350



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/141 (26%), Positives = 68/141 (48%), Gaps = 6/141 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K G   EA  +F  +   G++P+V+ + A++     A + + A  +   M+  G
Sbjct: 366 LIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKG 425

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V P+  TY+VL+     A+      + +A + L  M  +G  PN  T+ ++ +   ++ +
Sbjct: 426 VTPDVITYSVLVDAFCKASR-----VDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDR 480

Query: 213 VDEARGLLQQMKAK-GFVPDE 232
             EA  +   M  K G VPD+
Sbjct: 481 SGEAFQMFDDMALKHGLVPDK 501



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 40/137 (29%), Positives = 70/137 (51%), Gaps = 10/137 (7%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRM---L 149
           + D L K G T +A+ +  ++  KGH PDVV +  +I++   AG  +EA R+   M   +
Sbjct: 713 LVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRV 772

Query: 150 ASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG--MRPNAGTYTAVFEAF 207
           +    PN  TY+VLI GL          + +A++ + EM+ K   + PN  TY +  +  
Sbjct: 773 SRCCVPNVVTYSVLINGLCKVGR-----IDEARELIQEMMRKSCDVLPNIITYNSFLDGL 827

Query: 208 VRAQKVDEARGLLQQMK 224
            +   + EA  L++ ++
Sbjct: 828 CKQSMMAEACELMRSLR 844



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 50/191 (26%), Positives = 80/191 (41%), Gaps = 40/191 (20%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDK-GHMPDVVAHTAVIEA 131
           E+ H M + G T N V    + D L K   + EA Q+F  +  K G +PD + +  +I+ 
Sbjct: 451 ELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQMFDDMALKHGLVPDKITYCTLIDG 510

Query: 132 Y---ASAGQGK----------------------------EALRVFMRMLASGVAPNAYTY 160
                 AGQ +                             AL+V+ RML   + P+  T+
Sbjct: 511 LFRTGRAGQAEALLDAMPDPDTYAFNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTF 570

Query: 161 AVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
            +LI G   A +        A     EMV K ++P+  T+ A+ +   +A +V+ AR +L
Sbjct: 571 NILIAGACKAGN-----FEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDIL 625

Query: 221 QQMKAKGFVPD 231
             M   G  P+
Sbjct: 626 DLMGNLGVPPN 636



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/158 (24%), Positives = 77/158 (48%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M  + L  + +    + D L K G    A  +   + + G  P+VV + A++    
Sbjct: 589 LFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLC 648

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            +G+ +EA +    M++SG  P++ TY  L+  L  A+  +     DA + + E+   G 
Sbjct: 649 KSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTD-----DALQLVSELKSFGW 703

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            P+  TY  + +   ++ + ++A  +L++M  KG  PD
Sbjct: 704 DPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPD 741



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 6/141 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K G T EA  +F  +   G++P+VV +  ++       + + A  +   M+  G
Sbjct: 860 LIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKG 919

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V P+  TY+VL+     A+      + +A + L  M  +G  PN  T+ ++ +   ++ +
Sbjct: 920 VTPDVITYSVLVDAFCKASH-----VDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDQ 974

Query: 213 VDEARGLLQQMKAK-GFVPDE 232
             EA  +   M  K G  PD+
Sbjct: 975 SGEAFQMFDDMTLKHGLAPDK 995



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 6/135 (4%)

Query: 93  MFDALSKDGLTHEALQLF-AQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
           +  +L + G T  AL++F  ++   G  P +V +  +I     + +    + +F  ++  
Sbjct: 186 VLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVER 245

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           G  P+  TY  LI  L  A D     L +A++   +M  +   PN  TY+ +     +  
Sbjct: 246 GHHPDVVTYNTLIDSLCKAGD-----LEEARRLHGDMSSRSCVPNVVTYSVLINGLCKVG 300

Query: 212 KVDEARGLLQQMKAK 226
           ++DEAR L+Q+M  K
Sbjct: 301 RIDEARELIQEMTRK 315



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/151 (25%), Positives = 67/151 (44%), Gaps = 9/151 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F  M   G   N +    + + L K      A  +   + DKG  PDV+ ++ +++A+ 
Sbjct: 382 VFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFC 441

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK-G 192
            A +  EAL +   M + G  PN  T+  +I GL  +        G+A +   +M  K G
Sbjct: 442 KASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRS-----GEAFQMFDDMALKHG 496

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           + P+  TY  + +   R  +  +A  LL  M
Sbjct: 497 LVPDKITYCTLIDGLFRTGRAGQAEALLDAM 527



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 40/151 (26%), Positives = 65/151 (43%), Gaps = 9/151 (5%)

Query: 77   IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
            +F  M   G   N V    + + L K      A  +   + DKG  PDV+ ++ +++A+ 
Sbjct: 876  VFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFC 935

Query: 134  SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK-G 192
             A    EAL +   M + G  PN  T+  +I GL  +        G+A +   +M  K G
Sbjct: 936  KASHVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDQS-----GEAFQMFDDMTLKHG 990

Query: 193  MRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
            + P+  TY  + +   R     +A  LL  M
Sbjct: 991  LAPDKITYCTLIDGLFRTGWAGQAEVLLDAM 1021



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 6/111 (5%)

Query: 122 VVAHTAVIEAYASAGQGKEALRVFM-RMLASGVAPNAYTYAVLIKGLAAAADGNAKILGD 180
           V  +  V+++   AG+   AL +F   M   GVAP   TY  +I GL  + +     LG 
Sbjct: 180 VADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNE-----LGA 234

Query: 181 AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             +   E+V +G  P+  TY  + ++  +A  ++EAR L   M ++  VP+
Sbjct: 235 GMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPN 285



 Score = 50.1 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 68/171 (39%), Gaps = 37/171 (21%)

Query: 76   EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDK-GHMPDVVAHTAVIEA 131
            E+ H M + G T N V    + D L K   + EA Q+F  +  K G  PD + +  +I+ 
Sbjct: 945  ELLHGMASRGCTPNVVTFNSIIDGLCKSDQSGEAFQMFDDMTLKHGLAPDKITYCTLIDG 1004

Query: 132  Y---ASAGQGKEAL-------------------------RVFMRMLASGVAPNAYTYAVL 163
                  AGQ +  L                         R   RML   + P+  T+ +L
Sbjct: 1005 LFRTGWAGQAEVLLDAMPDPDTYAFNCCINGLSKLGDVSRALHRMLELELVPDKVTFNIL 1064

Query: 164  IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
            I G   A +        A     EMV K ++P+  T+ A+ +   +A +V+
Sbjct: 1065 IAGACKAGN-----FEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVE 1110


>gi|125604707|gb|EAZ43743.1| hypothetical protein OsJ_28367 [Oryza sativa Japonica Group]
          Length = 812

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/137 (35%), Positives = 73/137 (53%), Gaps = 5/137 (3%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
           A S  G   +A+Q F+++ +    P    +  +++A   +G    AL ++ RM+A+G AP
Sbjct: 146 AHSSAGRNADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALYNRMVAAGCAP 205

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           N  TY VL+ GL         + GDA K   EM+ +G+ PN   YT +  +   A K+DE
Sbjct: 206 NRATYNVLMDGLCKQG-----MAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDE 260

Query: 216 ARGLLQQMKAKGFVPDE 232
           A  LL  MK KG +PDE
Sbjct: 261 AVQLLGSMKDKGCLPDE 277



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 85/196 (43%), Gaps = 33/196 (16%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           ++++M   G   N      + D L K G+  +AL++F ++ D+G MP+V  +T ++ +  
Sbjct: 194 LYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLC 253

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTY----------------------------AVLIK 165
           +AG+  EA+++   M   G  P+  TY                            A+ +K
Sbjct: 254 NAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLK 313

Query: 166 GLAAAADG--NAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           G +   DG   A+   +   Y   M+ + + P+   YT +      A ++++A   L  M
Sbjct: 314 GYSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVM 373

Query: 224 KAKGFVPDEKAVKEAL 239
           K KGFVPD       L
Sbjct: 374 KKKGFVPDTFCYNTVL 389



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 81/170 (47%), Gaps = 17/170 (10%)

Query: 79  HKMRTEGLTNNAVK-------MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           H +R+E L NN V        M   L K GL  EA+Q+F ++ + G  P V+ + A+I+ 
Sbjct: 402 HTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDG 461

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGD---------AQ 182
           +   G+ +EA  +F +M   G  P+ +    L       ++   K++ D         A 
Sbjct: 462 FYREGRLEEARMLFHKM-EMGNNPSLFLRLTLGANQVCDSESLRKLVHDMCQSGQVLKAY 520

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           K L  ++  G+ P+  TY  +     +A+ +D A  L ++++ KG  PDE
Sbjct: 521 KLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDE 570



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 73/176 (41%), Gaps = 22/176 (12%)

Query: 77  IFHKMRTEG-------LTNNAVKMFDALSKDGLTHEALQ---------LFAQIKDKGHMP 120
           +FHKM           LT  A ++ D+ S   L H+  Q         L   I D G +P
Sbjct: 474 LFHKMEMGNNPSLFLRLTLGANQVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVP 533

Query: 121 DVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGD 180
           DVV +  +I     A     A+R+F  +   G++P+  TY  LI GL  A   N     D
Sbjct: 534 DVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAHREN-----D 588

Query: 181 AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGL-LQQMKAKGFVPDEKAV 235
           A      ++  G  P+   Y ++  +  R +K+ +A  L L  +  K   P E  V
Sbjct: 589 AMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINLWLDYLPKKYNFPVESEV 644



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 79/226 (34%), Gaps = 67/226 (29%)

Query: 84  EGLTNNAVKMFD-------------------ALSKDGLTHEALQLFAQIKDKGHMPDVVA 124
           +G+  +A+KMFD                   +L   G   EA+QL   +KDKG +PD V 
Sbjct: 220 QGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVT 279

Query: 125 HTAVIEAYASAGQGKEAL-RVFM----------------------------------RML 149
           + A +      G+  EA  R+ M                                   ML
Sbjct: 280 YNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYYKTML 339

Query: 150 ASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
              ++P+   Y ++I+G A A       + DA  +L  M  KG  P+   Y  V +    
Sbjct: 340 ERNISPDVVLYTIMIRGCAEAGR-----IEDALSFLDVMKKKGFVPDTFCYNTVLKVLCD 394

Query: 210 AQKVDEARGLLQQMKAKGFVPDEKA--------VKEALIDKRGQGF 247
              ++ A  L  +M     V D            K  L+D+  Q F
Sbjct: 395 HGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIF 440


>gi|356554658|ref|XP_003545661.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 675

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/139 (34%), Positives = 73/139 (52%), Gaps = 5/139 (3%)

Query: 94  FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGV 153
            D L K G   EA +L  ++   G +PD V +T++I A+  AG  ++A  VF+ ML+ G+
Sbjct: 477 IDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARAVFLEMLSKGI 536

Query: 154 APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV 213
            P+  TY VLI   A        IL     +  EM  KG+ PN  TY A+     + +K+
Sbjct: 537 FPSVVTYTVLIHSYAVRGRLKLAIL-----HFFEMHEKGVHPNVITYNALINGLCKVRKM 591

Query: 214 DEARGLLQQMKAKGFVPDE 232
           D+A     +M+AKG  P++
Sbjct: 592 DQAYKFFTEMQAKGISPNK 610



 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 77/160 (48%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+++ M   G+    V    M D+  K G   EALQL  Q++  G +P+ V +  ++  
Sbjct: 175 REVYNVMVECGIRPTVVTYNTMLDSFCKQGKVQEALQLLLQMQKMGCLPNDVTYNVLVNG 234

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
            + +G+ ++A  +   ML  G+  +AYTY  LI+G           L +A +   EM+ +
Sbjct: 235 LSHSGELEQAKELIQEMLRLGLEVSAYTYDPLIRGYCEKGQ-----LDEASRLGEEMLSR 289

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G  P   TY  +     +  +V +AR LL  M  K  +PD
Sbjct: 290 GAVPTLVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPD 329



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 78/184 (42%), Gaps = 10/184 (5%)

Query: 53  LPPPYDPFKKVVD--EEPTDPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEAL 107
            PP    +   +D   +  + +   E+  KM   GL  + V    +  A    G   +A 
Sbjct: 466 FPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKAR 525

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
            +F ++  KG  P VV +T +I +YA  G+ K A+  F  M   GV PN  TY  LI GL
Sbjct: 526 AVFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGL 585

Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
                   + +  A K+  EM  KG+ PN  TYT +           EA  L + M  + 
Sbjct: 586 C-----KVRKMDQAYKFFTEMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLDRE 640

Query: 228 FVPD 231
             PD
Sbjct: 641 IQPD 644



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 85/158 (53%), Gaps = 9/158 (5%)

Query: 77  IFHKMRTEGLT---NNAVKMFDAL-SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +F+KM ++G+     N  ++   L  +D     A +++  + + G  P VV +  +++++
Sbjct: 141 VFYKMVSKGMLPDLKNCNRVLRLLRDRDSSIDVAREVYNVMVECGIRPTVVTYNTMLDSF 200

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+ +EAL++ ++M   G  PN  TY VL+ GL+ + +     L  A++ + EM+  G
Sbjct: 201 CKQGKVQEALQLLLQMQKMGCLPNDVTYNVLVNGLSHSGE-----LEQAKELIQEMLRLG 255

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           +  +A TY  +   +    ++DEA  L ++M ++G VP
Sbjct: 256 LEVSAYTYDPLIRGYCEKGQLDEASRLGEEMLSRGAVP 293



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 5/139 (3%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K G   +A +L   + +K  MPD+V++  +I  Y   G   EA  +F  +   G+ P
Sbjct: 304 GLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRFRGLVP 363

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY  LI GL    D     L  A +   EM+  G  P+  T+T +   F +   +  
Sbjct: 364 SVVTYNTLIDGLCRMGD-----LDVAMRLKDEMIKHGPDPDVFTFTILVRGFCKLGNLPM 418

Query: 216 ARGLLQQMKAKGFVPDEKA 234
           A+ L  +M  +G  PD  A
Sbjct: 419 AKELFDEMLNRGLQPDRFA 437



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 66/127 (51%), Gaps = 5/127 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA  LFA+++ +G +P VV +  +I+     G    A+R+   M+  G  P+ +T+ +L+
Sbjct: 348 EAFLLFAELRFRGLVPSVVTYNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTILV 407

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           +G     +     L  A++   EM+ +G++P+   Y       ++     +A G+ ++M 
Sbjct: 408 RGFCKLGN-----LPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEML 462

Query: 225 AKGFVPD 231
           A+GF PD
Sbjct: 463 ARGFPPD 469



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 63/125 (50%), Gaps = 5/125 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A +LF ++ ++G  PD  A+   I      G   +A  +   MLA G  P+  TY V I 
Sbjct: 419 AKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFID 478

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           GL     GN K   +A + + +M+  G+ P+  TYT++  A + A  + +AR +  +M +
Sbjct: 479 GLHKL--GNLK---EASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARAVFLEMLS 533

Query: 226 KGFVP 230
           KG  P
Sbjct: 534 KGIFP 538



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 74/151 (49%), Gaps = 8/151 (5%)

Query: 72  RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R  + +F +M ++G+  + V    +  + +  G    A+  F ++ +KG  P+V+ + A+
Sbjct: 522 RKARAVFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNAL 581

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I       +  +A + F  M A G++PN YTY +LI       + N     +A +   +M
Sbjct: 582 INGLCKVRKMDQAYKFFTEMQAKGISPNKYTYTILIN-----ENCNLGHWQEALRLYKDM 636

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGL 219
           + + ++P++ T++A+ +   +  K    R L
Sbjct: 637 LDREIQPDSCTHSALLKHLNKDYKSHVVRHL 667



 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 72/143 (50%), Gaps = 7/143 (4%)

Query: 93  MFDALSKDGLTHEA---LQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRML 149
           + D L+++GL   A   ++    +K +  + DV+    ++  YA     ++ L VF +M+
Sbjct: 87  ILDILARNGLMRSAYCVMEKVVSVKMENGVVDVLILDLLLWIYAKKSMLEKCLLVFYKMV 146

Query: 150 ASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
           + G+ P+      +++ L    D +  +   A++    MV  G+RP   TY  + ++F +
Sbjct: 147 SKGMLPDLKNCNRVLR-LLRDRDSSIDV---AREVYNVMVECGIRPTVVTYNTMLDSFCK 202

Query: 210 AQKVDEARGLLQQMKAKGFVPDE 232
             KV EA  LL QM+  G +P++
Sbjct: 203 QGKVQEALQLLLQMQKMGCLPND 225


>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score = 85.5 bits (210), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 78/159 (49%), Gaps = 10/159 (6%)

Query: 77  IFHKMRTEGLTNNAVKMFDALSKD----GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +F +M   G   N +  F  L K     G  +EAL L+  +   G  P+VVA+  +I   
Sbjct: 301 LFAQMFLRGCDAN-IHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGL 359

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
            S G  +EAL+V  +M  SG  PN  TY++LI G A + D     L  A +    M+  G
Sbjct: 360 CSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGD-----LVGASETWNRMISHG 414

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            RPN  TYT + +   +    D+A  L+++M  +G  P+
Sbjct: 415 CRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPN 453



 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 89/220 (40%), Gaps = 43/220 (19%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +++  M  +G   N V    +   L  +G   EALQ+  Q++  G +P+V  ++ +I+ +
Sbjct: 335 DLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGF 394

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVL----------------------------- 163
           A +G    A   + RM++ G  PN  TY  +                             
Sbjct: 395 AKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNT 454

Query: 164 ------IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
                 IKGL     GN ++   A K L  M G G  PN  TY  + +A  R  K +EA 
Sbjct: 455 ITFNTFIKGLC----GNGRVEW-AMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAF 509

Query: 218 GLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257
           GL Q+++A+   P+       L      G  G    LFGK
Sbjct: 510 GLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGK 549



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 84/171 (49%), Gaps = 14/171 (8%)

Query: 74  LQEIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           +Q I  +M+ +G+       + + +   + G   +AL++F +I + G  P V  +  +++
Sbjct: 93  VQYILQQMKMDGINCCEDLFICIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLD 152

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
           A  S  + +    ++  M   G+ PN +TY +L+K L      +A     A K  +EM  
Sbjct: 153 ALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDA-----AHKLFVEMSN 207

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           KG  P+A TYT +  +  +A K+D+AR L  + K    VP    V  ALID
Sbjct: 208 KGCPPDAVTYTTMVSSLCKAGKIDDARELAGRFKPS--VP----VYNALID 252



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 83/185 (44%), Gaps = 12/185 (6%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++  +M+  G   N     ++ DAL +     EA  LF +I+ +   P++V +  V+  +
Sbjct: 475 KLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGF 534

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           + AG   EAL++F + L  G AP++ TY  +I   A    G  KI     + +  M  K 
Sbjct: 535 SRAGMMGEALQLFGKALVRGTAPDSITYNTMIH--AYCKQGKVKIAAQLVERVSSM--KE 590

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD---EKAVKEALIDKRGQGFRG 249
             P+  TYT++         ++EA   L +   +G  P+     A+     D  G    G
Sbjct: 591 WHPDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNALVRCFFDSLGH--MG 648

Query: 250 VINIL 254
            I+IL
Sbjct: 649 PIHIL 653



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 63/139 (45%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D + K+G    A++L  ++ D G  P+VV+++ +I +   +G  + A  +F +M   G
Sbjct: 250 LIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRG 309

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
              N +T+  LIKG           L +A      M+  G  PN   Y  +         
Sbjct: 310 CDANIHTFTPLIKGCFMRGK-----LYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGS 364

Query: 213 VDEARGLLQQMKAKGFVPD 231
           ++EA  +  QM+  G +P+
Sbjct: 365 LEEALQVCDQMQRSGCLPN 383



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 74/160 (46%), Gaps = 13/160 (8%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            ++F +M  +G   +AV    M  +L K G   +A +L  + K     P V  + A+I+ 
Sbjct: 199 HKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGRFK-----PSVPVYNALIDG 253

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G+ + A+++   M+ +GV PN  +Y+ +I  L  +  GN ++   A     +M  +
Sbjct: 254 MCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVS--GNVEL---AFALFAQMFLR 308

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G   N  T+T + +      K+ EA  L + M   G  P+
Sbjct: 309 GCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPN 348


>gi|356560325|ref|XP_003548443.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Glycine max]
          Length = 746

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 76/160 (47%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            E+F +M  EG+  N + +    D L K G  H A++ F ++K KG   +   +TA+I A
Sbjct: 413 HELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKGLKGNAATYTALISA 472

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +        A++ F  ML+SG +P+A  Y  LI GL  A   N     DA   + ++   
Sbjct: 473 FCGVNNINRAMQCFEEMLSSGCSPDAVVYYSLISGLCIAGRMN-----DASVVVSKLKLA 527

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G   +   Y  +   F + +K++    LL +M+  G  PD
Sbjct: 528 GFSLDRSCYNVLISGFCKKKKLERVYELLTEMEETGVKPD 567



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 74/169 (43%), Gaps = 8/169 (4%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           + F +M + G + +AV    +   L   G  ++A  + +++K  G   D   +  +I  +
Sbjct: 484 QCFEEMLSSGCSPDAVVYYSLISGLCIAGRMNDASVVVSKLKLAGFSLDRSCYNVLISGF 543

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               + +    +   M  +GV P+  TY  LI  L    D        A K + +M+ +G
Sbjct: 544 CKKKKLERVYELLTEMEETGVKPDTITYNTLISYLGKTGD-----FATASKVMEKMIKEG 598

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           +RP+  TY A+  A+   + VDE   +  +M +   VP    +   LID
Sbjct: 599 LRPSVVTYGAIIHAYCSKKNVDEGMKIFGEMCSTSKVPPNTVIYNILID 647



 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 7/153 (4%)

Query: 82  RTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEA 141
           R   +T N   + D   K G    A +LF Q+ ++G  P+V+    +++     G+   A
Sbjct: 390 RPNTVTYNC--LIDGFFKAGNFDRAHELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRA 447

Query: 142 LRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYT 201
           +  F  M   G+  NA TY  LI       + N      A +   EM+  G  P+A  Y 
Sbjct: 448 VEFFNEMKGKGLKGNAATYTALISAFCGVNNINR-----AMQCFEEMLSSGCSPDAVVYY 502

Query: 202 AVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
           ++      A ++++A  ++ ++K  GF  D   
Sbjct: 503 SLISGLCIAGRMNDASVVVSKLKLAGFSLDRSC 535



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 73/161 (45%), Gaps = 11/161 (6%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+  +M   G+  + +    +   L K G    A ++  ++  +G  P VV + A+I AY
Sbjct: 554 ELLTEMEETGVKPDTITYNTLISYLGKTGDFATASKVMEKMIKEGLRPSVVTYGAIIHAY 613

Query: 133 ASAGQGKEALRVFMRMLA-SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME-MVG 190
            S     E +++F  M + S V PN   Y +LI  L    D +  I       LME M  
Sbjct: 614 CSKKNVDEGMKIFGEMCSTSKVPPNTVIYNILIDALCRNNDVDRAI------SLMEDMKV 667

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           K +RPN  TY A+ +     + + +A  L+ +M  +   PD
Sbjct: 668 KRVRPNTTTYNAILKGVRDKKMLHKAFELMDRMVEEACRPD 708



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 66/153 (43%), Gaps = 16/153 (10%)

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG------VAPNAYTYA 161
           +L A+++ +   P VV    ++     A +  EAL+VF R+   G      V P+   + 
Sbjct: 302 ELLAEMEKRKIRPSVVTFGILVNHLCKARRIDEALQVFDRLRGKGGSNWVGVEPDVVLFN 361

Query: 162 VLIKGLAAAADGNAKILGDAQKYLMEM-VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
            LI GL            D    L EM +G   RPN  TY  + + F +A   D A  L 
Sbjct: 362 TLIDGLCKVGKEE-----DGLSLLEEMKMGNINRPNTVTYNCLIDGFFKAGNFDRAHELF 416

Query: 221 QQMKAKGFVPDEKAVKEALID---KRGQGFRGV 250
           +QM  +G  P+   +   L+D   K G+  R V
Sbjct: 417 RQMNEEGVQPNVITLN-TLVDGLCKHGRVHRAV 448


>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 81/159 (50%), Gaps = 10/159 (6%)

Query: 77  IFHKMRTEGLTNNAVKMFDALSKD----GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +F +M   G   N +  F  L K     G  +EAL L+  +   G  P+VVA+  +I   
Sbjct: 301 LFAQMFLRGCDAN-IHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGL 359

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
            S G  +EAL+V  +M  SG  PN  TY++LI G A + D    ++G ++ +   M+  G
Sbjct: 360 CSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGD----LVGASETW-NRMISHG 414

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            RPN  TYT + +   +    D+A  L+++M  +G  P+
Sbjct: 415 CRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPN 453



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 89/220 (40%), Gaps = 43/220 (19%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +++  M  +G   N V    +   L  +G   EALQ+  Q++  G +P+V  ++ +I+ +
Sbjct: 335 DLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGF 394

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVL----------------------------- 163
           A +G    A   + RM++ G  PN  TY  +                             
Sbjct: 395 AKSGDLVGASETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNT 454

Query: 164 ------IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
                 IKGL     GN ++   A K L  M G G  PN  TY  + +A  R  K +EA 
Sbjct: 455 MTFNTFIKGLC----GNGRVEW-AMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAF 509

Query: 218 GLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257
           GL Q+++A+   P+       L      G  G    LFGK
Sbjct: 510 GLFQEIEARNLQPNLVTYNTVLYGFSRAGMMGEALQLFGK 549



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 49/171 (28%), Positives = 84/171 (49%), Gaps = 14/171 (8%)

Query: 74  LQEIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           +Q I  +M+ +G+       + + +   + G   +AL++F +I + G  P V  +  +++
Sbjct: 93  VQYILQQMKMDGINCCEDLFICIINGYKRVGSAEQALKMFYRIGEFGCKPTVRIYNHLLD 152

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
           A  S  + +    ++  M   G+ PN +TY +L+K L      +A     A K  +EM  
Sbjct: 153 ALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDA-----AHKLFVEMSN 207

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           KG  P+A TYT +  +  +A K+D+AR L  + K    VP    V  ALID
Sbjct: 208 KGCPPDAVTYTTMVSSLCKAGKIDDARELAGRFKPS--VP----VYNALID 252



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 83/185 (44%), Gaps = 12/185 (6%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++  +M+  G   N     ++ DAL +     EA  LF +I+ +   P++V +  V+  +
Sbjct: 475 KLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGF 534

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           + AG   EAL++F + L  G AP++ TY  +I   A    G  KI     + +  M  K 
Sbjct: 535 SRAGMMGEALQLFGKALVRGTAPDSITYNTMIH--AYCKQGKVKIAAQLVERVSSM--KE 590

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD---EKAVKEALIDKRGQGFRG 249
             P+  TYT++         ++EA   L +   +G  P+     A+     D  G    G
Sbjct: 591 WHPDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNALVRCFFDSLGH--MG 648

Query: 250 VINIL 254
            I+IL
Sbjct: 649 PIHIL 653



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 63/139 (45%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D + K+G    A++L  ++ D G  P+VV+++ +I +   +G  + A  +F +M   G
Sbjct: 250 LIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRG 309

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
              N +T+  LIKG           L +A      M+  G  PN   Y  +         
Sbjct: 310 CDANIHTFTPLIKGCFMRGK-----LYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGS 364

Query: 213 VDEARGLLQQMKAKGFVPD 231
           ++EA  +  QM+  G +P+
Sbjct: 365 LEEALQVCDQMQRSGCLPN 383



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 74/160 (46%), Gaps = 13/160 (8%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            ++F +M  +G   +AV    M  +L K G   +A +L  + K     P V  + A+I+ 
Sbjct: 199 HKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDARELAGRFK-----PSVPVYNALIDG 253

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G+ + A+++   M+ +GV PN  +Y+ +I  L  +  GN ++   A     +M  +
Sbjct: 254 MCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVS--GNVEL---AFALFAQMFLR 308

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G   N  T+T + +      K+ EA  L + M   G  P+
Sbjct: 309 GCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPN 348


>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
 gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 747

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 82/160 (51%), Gaps = 8/160 (5%)

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E   +MR  GL  N      + D  S+ G  +EA ++  ++ D G  P VV + A+I  +
Sbjct: 366 EFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGH 425

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+ ++A+ V   M   G++P+  +Y+ ++ G   + D     + +A +   EMV KG
Sbjct: 426 CVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYD-----VDEALRVKREMVEKG 480

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           ++P+  TY+++ + F   ++  EA  L ++M   G  PDE
Sbjct: 481 IKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDE 520



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 5/134 (3%)

Query: 98  SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA 157
            K+G  H+AL + A++   G  P V+ +T++I +   AG    A+    +M   G+ PN 
Sbjct: 321 CKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNE 380

Query: 158 YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
            TY  L+ G +     N     +A + L EM   G  P+  TY A+        K+++A 
Sbjct: 381 RTYTTLVDGFSQKGYMN-----EAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAI 435

Query: 218 GLLQQMKAKGFVPD 231
            +L+ MK KG  PD
Sbjct: 436 AVLEDMKEKGLSPD 449



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 82/179 (45%), Gaps = 11/179 (6%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F KM T+G   N V    + D   K     +  +L   +  KG  P+++++  VI    
Sbjct: 227 LFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLC 286

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G+ KE   V   M   G + +  TY  LIKG     + +  ++  A     EM+  G+
Sbjct: 287 REGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHA-----EMLRHGL 341

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVIN 252
            P+  TYT++  +  +A  ++ A   L QM+ +G  P+E+     L+D   Q  +G +N
Sbjct: 342 TPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYT-TLVDGFSQ--KGYMN 397



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 68/131 (51%), Gaps = 5/131 (3%)

Query: 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
           G   +A+ +   +K+KG  PDVV+++ V+  +  +    EALRV   M+  G+ P+  TY
Sbjct: 429 GKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITY 488

Query: 161 AVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
           + LI+G         +   +A     EM+  G+ P+  TYTA+  A+     +++A  L 
Sbjct: 489 SSLIQGFC-----EQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLH 543

Query: 221 QQMKAKGFVPD 231
            +M  KG +PD
Sbjct: 544 NEMVEKGVLPD 554



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 89/183 (48%), Gaps = 8/183 (4%)

Query: 77  IFHKMRTEGLTNNAVKMFDALSKDGLTH---EALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +   M+ +GL+ + V     LS    ++   EAL++  ++ +KG  PD + ++++I+ + 
Sbjct: 437 VLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFC 496

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
              + KEA  ++  ML  G+ P+ +TY  LI       D     L  A +   EMV KG+
Sbjct: 497 EQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGD-----LEKALQLHNEMVEKGV 551

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINI 253
            P+  TY+ +     +  +  EA+ LL ++  +  VP +      + +     F+ V+++
Sbjct: 552 LPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSL 611

Query: 254 LFG 256
           + G
Sbjct: 612 IKG 614



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 9/129 (6%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A  +F ++ +    P+V  +  +I  +  AG    AL +F +M   G  PN  TY  LI 
Sbjct: 189 AENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLI- 247

Query: 166 GLAAAADGNAKI--LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
                 DG  K+  + D  K L  M  KG+ PN  +Y  V     R  ++ E   +L +M
Sbjct: 248 ------DGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEM 301

Query: 224 KAKGFVPDE 232
             +G+  DE
Sbjct: 302 NRRGYSLDE 310



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 69/147 (46%), Gaps = 10/147 (6%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +A   +G   +ALQL  ++ +KG +PDVV ++ +I       + +EA R+ +++    
Sbjct: 526 LINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEE 585

Query: 153 VAPNAYTYAVLI--------KGLAAAADGNAK--ILGDAQKYLMEMVGKGMRPNAGTYTA 202
             P+  TY  LI        K + +   G     ++ +A +    M+GK  +P+   Y  
Sbjct: 586 SVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNI 645

Query: 203 VFEAFVRAQKVDEARGLLQQMKAKGFV 229
           +     RA  + +A  L ++M   GF+
Sbjct: 646 MIHGHCRAGDIRKAYTLYKEMVKSGFL 672



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 68/140 (48%), Gaps = 6/140 (4%)

Query: 103 THEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAV 162
           T EA  L+ ++   G  PD   +TA+I AY   G  ++AL++   M+  GV P+  TY+V
Sbjct: 501 TKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSV 560

Query: 163 LIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
           LI GL   +        +A++ L+++  +   P+  TY  + E     +       L++ 
Sbjct: 561 LINGLNKQSRTR-----EAKRLLLKLFYEESVPSDVTYHTLIENCSNIE-FKSVVSLIKG 614

Query: 223 MKAKGFVPDEKAVKEALIDK 242
              KG + +   V E+++ K
Sbjct: 615 FCMKGMMTEADQVFESMLGK 634



 Score = 44.3 bits (103), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 32/143 (22%), Positives = 58/143 (40%), Gaps = 5/143 (3%)

Query: 89  NAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRM 148
           + V +       G+  EA Q+F  +  K H PD  A+  +I  +  AG  ++A  ++  M
Sbjct: 607 SVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEM 666

Query: 149 LASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFV 208
           + SG   +  T   L+K L      N     +    ++ ++       A     + E   
Sbjct: 667 VKSGFLLHTVTVIALVKALHKEGKVN-----ELNSVIVHVLRSCELSEAEQAKVLVEINH 721

Query: 209 RAQKVDEARGLLQQMKAKGFVPD 231
           R   +D    +L +M   GF+P+
Sbjct: 722 REGNMDVVLDVLAEMAKDGFLPN 744


>gi|449433055|ref|XP_004134313.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18950-like [Cucumis sativus]
          Length = 602

 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 101/229 (44%), Gaps = 38/229 (16%)

Query: 53  LPPPYDPFKKVVD---EEPTDPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEA 106
           L P  D F K++    +E    R L E+ H M  +    +     ++ +   K+ +T +A
Sbjct: 258 LTPCNDAFNKLISGFCKEKNHHRVL-ELVHTMIVKNRNPDIFTYQEIINGFCKNWMTLQA 316

Query: 107 LQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKG 166
            ++F  +KD+G+ PD+V +T +I  +   GQ ++A +++  M+  G  PN Y+Y  LI G
Sbjct: 317 FEVFNALKDRGYAPDMVMYTTLIHGFCKMGQLEDASKLWFEMIDKGFLPNEYSYNTLIYG 376

Query: 167 LAAAAD----------------------GNAKILG--------DAQKYLMEMVGKGMRPN 196
                +                       N  ILG        +A  +  EM  K +  +
Sbjct: 377 FCKIGNLDEAMKLYKKMLDSGYKETTLSCNTLILGLCLHGRTDEAYDFFREMPCKNIVCD 436

Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
             TY  + + F R  KV ++  LL++++AKG  P   +    LI K  Q
Sbjct: 437 VITYNTLIQGFCREGKVLQSTDLLKELQAKGLQPSTSSYAH-LIQKLCQ 484



 Score = 46.2 bits (108), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 31/140 (22%), Positives = 55/140 (39%), Gaps = 5/140 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +  A   D     A ++  Q  + G  P   A   +I  +         L +   M+   
Sbjct: 233 LIQAFCNDNKVSRAYEILRQSLEDGLTPCNDAFNKLISGFCKEKNHHRVLELVHTMIVKN 292

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+ +TY  +I G       N   L  A +    +  +G  P+   YT +   F +  +
Sbjct: 293 RNPDIFTYQEIINGFCK----NWMTL-QAFEVFNALKDRGYAPDMVMYTTLIHGFCKMGQ 347

Query: 213 VDEARGLLQQMKAKGFVPDE 232
           +++A  L  +M  KGF+P+E
Sbjct: 348 LEDASKLWFEMIDKGFLPNE 367



 Score = 43.9 bits (102), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 29/139 (20%), Positives = 57/139 (41%), Gaps = 5/139 (3%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L   G T EA   F ++  K  + DV+ +  +I+ +   G+  ++  +   + A G+ P
Sbjct: 411 GLCLHGRTDEAYDFFREMPCKNIVCDVITYNTLIQGFCREGKVLQSTDLLKELQAKGLQP 470

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  +YA LI+ L          + +A++   +M  +G++P   T   +         V E
Sbjct: 471 STSSYAHLIQKLCQLGS-----VQEAKEMWNDMHNRGLQPMVCTRDHIISGLCEQGYVVE 525

Query: 216 ARGLLQQMKAKGFVPDEKA 234
               L  M      P ++ 
Sbjct: 526 GMEWLITMLKSNLKPQKET 544


>gi|77556780|gb|ABA99576.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 696

 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 86/175 (49%), Gaps = 11/175 (6%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +EI  +M+ +G   N V    +    SK G  H A  +   + + G MPD++  T++I+ 
Sbjct: 453 EEIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNAKVVLKMLMEHGFMPDIITFTSLIDG 512

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
             +  Q  +A   F  M   GV PNA TY VL+  L +A   N  I       L +M   
Sbjct: 513 LCNTHQLDDAFVCFEEMAEWGVRPNAQTYNVLMHTLCSAGHVNKAI-----DLLNKMKID 567

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE---KAVKEALIDKR 243
           G+ P+A ++ A+  +F R +KVD+A  +   M   G VPD     ++ +AL D+R
Sbjct: 568 GVTPDAYSFNALILSFCRMRKVDKAEDIFNDMVRFGVVPDSYTYNSLIKALCDER 622



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M   LSK  +  EA++   ++  +G++ D  A   V+       +  +   +    + +G
Sbjct: 334 MLYCLSKKDMAKEAVEFEKRMSARGYLLDSTAFGIVMSCALKCLEVSDLCELLDSFIKNG 393

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P    Y ++IK L      N K    A  YL  MV KG+  +  +Y  V + FV+A  
Sbjct: 394 GNPGFDVYIMVIKSLL-----NCKNFSKANHYLGHMVLKGLLSSVMSYNMVIDCFVKAGA 448

Query: 213 VDEARGLLQQMKAKGFVPD 231
           VD+A  ++++M+ KGF+P+
Sbjct: 449 VDKAEEIVKEMQDKGFLPN 467



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 80/156 (51%), Gaps = 11/156 (7%)

Query: 81  MRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140
            R +  T N+  +   + + G+  EA++L  Q++ +G  P+V  +T +++ + +AG+ +E
Sbjct: 219 CRPDHFTYNS--LVHGVCRRGIVDEAVRLVRQMEGEGIRPNVFTYTMLVDGFCNAGRVEE 276

Query: 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK--GMRPNAG 198
           A R+  +M   GVAP+  TY  L+ G+    + +      A + L + +G    + P+A 
Sbjct: 277 AFRMLDKMKEKGVAPSEATYRTLVHGVFRCLERD-----KAYRMLSDWLGHETSLHPSA- 330

Query: 199 TYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
            +T ++    +     EA    ++M A+G++ D  A
Sbjct: 331 CHTMLY-CLSKKDMAKEAVEFEKRMSARGYLLDSTA 365



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 70/154 (45%), Gaps = 10/154 (6%)

Query: 72  RNLQEIFHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           R   E+F +M   GL   +  +++AL     + G    A   F Q+   G  PD   + +
Sbjct: 170 RYAHEVFVQMPRLGL-RPSTAVYNALIAASVRAGAVDTAYLRFQQMPADGCRPDHFTYNS 228

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           ++      G   EA+R+  +M   G+ PN +TY +L+ G       NA  + +A + L +
Sbjct: 229 LVHGVCRRGIVDEAVRLVRQMEGEGIRPNVFTYTMLVDGFC-----NAGRVEEAFRMLDK 283

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221
           M  KG+ P+  TY  +     R  + D+A  +L 
Sbjct: 284 MKEKGVAPSEATYRTLVHGVFRCLERDKAYRMLS 317



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 5/124 (4%)

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
           +L A+++  G         A++E++   G  + A  VF++M   G+ P+   Y  LI   
Sbjct: 139 RLVAEVRGCGCEVSEELVCALVESWGRLGLARYAHEVFVQMPRLGLRPSTAVYNALI--- 195

Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
             AA   A  +  A     +M   G RP+  TY ++     R   VDEA  L++QM+ +G
Sbjct: 196 --AASVRAGAVDTAYLRFQQMPADGCRPDHFTYNSLVHGVCRRGIVDEAVRLVRQMEGEG 253

Query: 228 FVPD 231
             P+
Sbjct: 254 IRPN 257



 Score = 37.7 bits (86), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 6/119 (5%)

Query: 113 IKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172
           IK+ G+ P    +  VI++  +     +A      M+  G+  +  +Y ++I     A  
Sbjct: 390 IKNGGN-PGFDVYIMVIKSLLNCKNFSKANHYLGHMVLKGLLSSVMSYNMVIDCFVKAG- 447

Query: 173 GNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
                +  A++ + EM  KG  PN  T+  +   + +   V  A+ +L+ +   GF+PD
Sbjct: 448 ----AVDKAEEIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNAKVVLKMLMEHGFMPD 502


>gi|242082678|ref|XP_002441764.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
 gi|241942457|gb|EES15602.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
          Length = 695

 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 88/187 (47%), Gaps = 33/187 (17%)

Query: 78  FHKMRTEGLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F +M+ +G+  N V      DA  K+GL  EA++LFAQ++ +G MP+   +T++++    
Sbjct: 293 FGEMKRQGVVANVVTFSTFVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCK 352

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA-----AAAD--------GNAK----- 176
           AG+  +A+ +   M+  G+ PN  TY V++ GL      A AD        G  K     
Sbjct: 353 AGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELL 412

Query: 177 ----ILGD--------AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
               I G         A   L +M  KGM  +   Y  +     + QKVDEA+ LL +M 
Sbjct: 413 YTTLIHGHFMNNNSERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMA 472

Query: 225 AKGFVPD 231
             G  P+
Sbjct: 473 GCGLRPN 479



 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 83/166 (50%), Gaps = 8/166 (4%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D   ++++  +MR  G   + V    + +  SK G   +A   F ++K +G + +VV  +
Sbjct: 250 DLEEVEQLVSEMRKSGCAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTFS 309

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
             ++A+   G  +EA+++F +M   G+ PN +TY  L+ G   A       L DA   L 
Sbjct: 310 TFVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGR-----LDDAIVLLD 364

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           EMV +G+ PN  TYT + +   +  KV EA  +L  M+  G   +E
Sbjct: 365 EMVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGVKANE 410



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 80/201 (39%), Gaps = 34/201 (16%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + + HKM   GL  N V    + DAL K G   EA+ L  +I D G  P+VV + A+I+ 
Sbjct: 465 KSLLHKMAGCGLRPNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDG 524

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKI-------------- 177
              AG   EA+  F +M   G+ PN   Y  LI G       N  +              
Sbjct: 525 LCKAGSISEAISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLD 584

Query: 178 ----------------LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221
                           L DA     +M+  G++ +   YT     F     + EARG+L 
Sbjct: 585 KVVYTSLIDGYMKQANLQDAFALKTKMIESGLQLDLYCYTCFISGFCNMNMMQEARGVLS 644

Query: 222 QMKAKGFVPDEKAVKEALIDK 242
           +M   G  PD K V   LI K
Sbjct: 645 EMIGTGITPD-KTVYNCLIRK 664



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 84/169 (49%), Gaps = 9/169 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++ ++M+ +G+  +      +   L KD    EA  L  ++   G  P+ V +T +++A 
Sbjct: 431 DLLNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDAL 490

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             AG+  EA+ +  ++L SG  PN  TY  LI GL  A       + +A  +  +M   G
Sbjct: 491 FKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGS-----ISEAISHFNKMRELG 545

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           + PN   YTA+ + F +   +++A  L+ +M  KG   D K V  +LID
Sbjct: 546 LDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLD-KVVYTSLID 593



 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 68/140 (48%), Gaps = 5/140 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K+G   EA  LF ++K  G  PDVV + ++I+ Y   G  +E  ++   M  SG
Sbjct: 206 VIDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQLVSEMRKSG 265

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            A +  TY  LI   +         +  A  Y  EM  +G+  N  T++   +AF +   
Sbjct: 266 CAADVVTYNALINCFSKFGR-----MEKAYSYFGEMKRQGVVANVVTFSTFVDAFCKEGL 320

Query: 213 VDEARGLLQQMKAKGFVPDE 232
           V EA  L  QM+ +G +P+E
Sbjct: 321 VQEAMKLFAQMRVRGMMPNE 340



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 74/151 (49%), Gaps = 8/151 (5%)

Query: 78  FHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F+KMR  GL  N      + D   K G  ++A+ L  ++ DKG   D V +T++I+ Y  
Sbjct: 538 FNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMK 597

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
               ++A  +  +M+ SG+  + Y Y   I G       N  ++ +A+  L EM+G G+ 
Sbjct: 598 QANLQDAFALKTKMIESGLQLDLYCYTCFISGFC-----NMNMMQEARGVLSEMIGTGIT 652

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           P+   Y  +   + +   ++EA  L  +M++
Sbjct: 653 PDKTVYNCLIRKYQKLGNMEEASSLQNEMES 683


>gi|413942671|gb|AFW75320.1| hypothetical protein ZEAMMB73_530230 [Zea mays]
          Length = 542

 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/131 (36%), Positives = 75/131 (57%), Gaps = 5/131 (3%)

Query: 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
           G  + AL++  ++   G +PDVV +T V+ AY + G  + A ++F  ++ASG  P+A  Y
Sbjct: 214 GDLNSALKVLDEMIGWGIVPDVVTYTTVLTAYCAKGDLEGAQQLFDDIIASGRRPDATMY 273

Query: 161 AVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
            VLI G       + + L DA + + EM   G++PN  TY+ V EA  + +K  EAR L 
Sbjct: 274 TVLIDGYC-----HHRKLQDAARIMDEMGAAGVQPNEVTYSVVIEACCKERKSTEARDLT 328

Query: 221 QQMKAKGFVPD 231
           ++M   G+VPD
Sbjct: 329 REMLGAGYVPD 339



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 74/152 (48%), Gaps = 7/152 (4%)

Query: 90  AVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRML 149
             K+ D L +DG   EA +++ Q+  K   PD    + +I      G  +EA ++F   L
Sbjct: 343 CAKVVDVLCQDGKAGEANEMWRQMVKKSVPPDNTVVSTLIYWLCKKGMVQEARKLFDE-L 401

Query: 150 ASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
             G  P+  TY  LI GL    +     L +A +   +MV +   PNA TY A+ + F +
Sbjct: 402 ERGFLPSLLTYNSLIIGLCENGE-----LQEAGRVWDDMVERRYEPNAMTYEALIKGFCK 456

Query: 210 AQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
             K +E   L ++M ++G  P  K + +AL+D
Sbjct: 457 IGKSNEGYALFKEMMSRGCTP-SKFLYQALVD 487



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 69/163 (42%), Gaps = 8/163 (4%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++  +M   G+  + V    +  A    G    A QLF  I   G  PD   +T +I+ Y
Sbjct: 221 KVLDEMIGWGIVPDVVTYTTVLTAYCAKGDLEGAQQLFDDIIASGRRPDATMYTVLIDGY 280

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               + ++A R+   M A+GV PN  TY+V+I+              +A+    EM+G G
Sbjct: 281 CHHRKLQDAARIMDEMGAAGVQPNEVTYSVVIEACCKERKST-----EARDLTREMLGAG 335

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAV 235
             P+      V +   +  K  EA  + +QM  K   PD   V
Sbjct: 336 YVPDTPLCAKVVDVLCQDGKAGEANEMWRQMVKKSVPPDNTVV 378



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 61/127 (48%), Gaps = 8/127 (6%)

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
           P++V+   +++     G    AL+V   M+  G+ P+  TY  ++    A  D     L 
Sbjct: 198 PNLVSCNILLKGLVGIGDLNSALKVLDEMIGWGIVPDVVTYTTVLTAYCAKGD-----LE 252

Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE---KAVK 236
            AQ+   +++  G RP+A  YT + + +   +K+ +A  ++ +M A G  P+E     V 
Sbjct: 253 GAQQLFDDIIASGRRPDATMYTVLIDGYCHHRKLQDAARIMDEMGAAGVQPNEVTYSVVI 312

Query: 237 EALIDKR 243
           EA   +R
Sbjct: 313 EACCKER 319



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 6/131 (4%)

Query: 97  LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
           L K G+  EA +LF ++ ++G +P ++ + ++I      G+ +EA RV+  M+     PN
Sbjct: 385 LCKKGMVQEARKLFDEL-ERGFLPSLLTYNSLIIGLCENGELQEAGRVWDDMVERRYEPN 443

Query: 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
           A TY  LIKG       N     +      EM+ +G  P+   Y A+ ++  +    D  
Sbjct: 444 AMTYEALIKGFCKIGKSN-----EGYALFKEMMSRGCTPSKFLYQALVDSLSKPSHDDTV 498

Query: 217 RGLLQQMKAKG 227
             +++    +G
Sbjct: 499 CTIVEAAALRG 509



 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 6/89 (6%)

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN  +  +L+KGL    D N+     A K L EM+G G+ P+  TYT V  A+     
Sbjct: 196 ITPNLVSCNILLKGLVGIGDLNS-----ALKVLDEMIGWGIVPDVVTYTTVLTAYCAKGD 250

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALID 241
           ++ A+ L   + A G  PD   +   LID
Sbjct: 251 LEGAQQLFDDIIASGRRPD-ATMYTVLID 278


>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 76/139 (54%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K G   EA QLF ++K +G +P ++++ ++I  +  AG+ +E+ R+   ML  G
Sbjct: 221 IVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQG 280

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+  T+ VLI  L        K++ +A+K L  M+  G+ P+  TY ++ E F     
Sbjct: 281 LQPDMVTFNVLIDTLCK----EGKVI-EAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGD 335

Query: 213 VDEARGLLQQMKAKGFVPD 231
           ++ AR L   M +KG  PD
Sbjct: 336 LNSARELFVSMPSKGCEPD 354



 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 79/163 (48%), Gaps = 14/163 (8%)

Query: 77  IFHKMRTEGLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           ++++MR  GL+++   +    + L       E    FA I  +G+ P++V +  +I+   
Sbjct: 91  LYNQMRLSGLSSDRCTLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLC 150

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNA------KILGDAQKYLME 187
              +  EA R+F+RM   G  P+  TY  LIKGL    + N       ++L D  +Y + 
Sbjct: 151 MEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEI- 209

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
                 +PN  TY  + +   +  + DEA+ L ++MK +G +P
Sbjct: 210 ----NCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIP 248



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 78/157 (49%), Gaps = 8/157 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +  +M  +GL  + V    + D L K+G   EA +L   + + G +PD+V + ++IE 
Sbjct: 270 KRLLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEG 329

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +   G    A  +F+ M + G  P+  +Y VLI G +         + +A K   EM+  
Sbjct: 330 FCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLK-----VEEAMKLYNEMLLV 384

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
           G RPN  TY ++ +    A KVD+A+ L   MKA G 
Sbjct: 385 GKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGI 421



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 89/195 (45%), Gaps = 33/195 (16%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D  + +E+F  M ++G   + +    + +  SK     EA++L+ ++   G  P+V+ + 
Sbjct: 335 DLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYD 394

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA------------------ 168
           ++++    AG+  +A ++F  M A G+A N+YTY + + GL                   
Sbjct: 395 SLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSS 454

Query: 169 ----------AAADGNAKI--LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
                        DG  K   L  A +   ++  +G  PN  TYT +   F R  +VD+A
Sbjct: 455 NFKLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKA 514

Query: 217 RGLLQQMKAKGFVPD 231
             L+Q+M+A G  PD
Sbjct: 515 NVLIQKMEANGCTPD 529



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 70/160 (43%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +++F  M+  G+  N+       D L K+    EA++LF ++K      ++     +I+ 
Sbjct: 410 KKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDG 469

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              AG+ + A  +F ++   G  PN  TY ++I G           +  A   + +M   
Sbjct: 470 LCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQ-----VDKANVLIQKMEAN 524

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G  P+  TY  +   F  + K++E   LL +M  K   PD
Sbjct: 525 GCTPDIITYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPD 564



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 65/136 (47%), Gaps = 5/136 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +     G  + A +LF  +  KG  PDV+++  +I  Y+   + +EA++++  ML  G
Sbjct: 326 LIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVG 385

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN  TY  L+KG+  A       + DA+K    M   G+  N+ TY    +   +   
Sbjct: 386 KRPNVITYDSLLKGIFLAGK-----VDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDC 440

Query: 213 VDEARGLLQQMKAKGF 228
           + EA  L  ++K+  F
Sbjct: 441 LFEAMKLFTELKSSNF 456



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 11/152 (7%)

Query: 89  NAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRM 148
           N   + D L K G    A +LF ++ ++GH P+VV +T +I  +   GQ  +A  +  +M
Sbjct: 462 NLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKM 521

Query: 149 LASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFV 208
            A+G  P+  TY  L++G   +       L +  + L  M  K + P+A T + V +   
Sbjct: 522 EANGCTPDIITYNTLMRGFYESNK-----LEEVVQLLHRMAQKDVSPDAITCSIVVDMLS 576

Query: 209 RAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
           + +K  E   LL +       P +K V + L+
Sbjct: 577 KDEKYQECLHLLPRF------PIQKGVDKHLL 602


>gi|302784330|ref|XP_002973937.1| hypothetical protein SELMODRAFT_100758 [Selaginella moellendorffii]
 gi|300158269|gb|EFJ24892.1| hypothetical protein SELMODRAFT_100758 [Selaginella moellendorffii]
          Length = 823

 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 77/160 (48%), Gaps = 9/160 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQ-LFAQIKDKGHMPDVVAHTAVIEAY 132
           +F  M+ EG   NAV    M D   K G + + +Q LF ++KD    PD   +  +I A 
Sbjct: 235 LFETMQREGQRGNAVTYNVMLDLYGKRGDSWDRIQSLFQEMKDLEISPDDYTYNTMITAC 294

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
                 +EALR+F  M  +G  PN  TY  L+        G   +  +A + L+EM   G
Sbjct: 295 IQNSHCQEALRLFQEMKEAGCCPNRVTYNALLD-----VYGKGGMHKEASELLVEMEAAG 349

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           + PN  TY  +  A+ RA   DEA  L + + +KG  PDE
Sbjct: 350 ISPNIVTYNELIAAYARAGLCDEAAALKKSLLSKGLCPDE 389



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 87/177 (49%), Gaps = 13/177 (7%)

Query: 74  LQEIFHKMRT-----EGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           +Q +F +M+      +  T N   M  A  ++    EAL+LF ++K+ G  P+ V + A+
Sbjct: 268 IQSLFQEMKDLEISPDDYTYNT--MITACIQNSHCQEALRLFQEMKEAGCCPNRVTYNAL 325

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           ++ Y   G  KEA  + + M A+G++PN  TY  LI     AA   A +  +A      +
Sbjct: 326 LDVYGKGGMHKEASELLVEMEAAGISPNIVTYNELI-----AAYARAGLCDEAAALKKSL 380

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
           + KG+ P+  TY  +  AF RA++ ++A     +M+     P+       LID  G+
Sbjct: 381 LSKGLCPDEFTYCTLISAFNRAERYEKALETFTEMRKTNCTPN-IVTYNILIDIYGR 436



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 76/158 (48%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M+  G   N V    + D   K G+  EA +L  +++  G  P++V +  +I AYA
Sbjct: 306 LFQEMKEAGCCPNRVTYNALLDVYGKGGMHKEASELLVEMEAAGISPNIVTYNELIAAYA 365

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG   EA  +   +L+ G+ P+ +TY  LI     +A   A+    A +   EM     
Sbjct: 366 RAGLCDEAAALKKSLLSKGLCPDEFTYCTLI-----SAFNRAERYEKALETFTEMRKTNC 420

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            PN  TY  + + + R +K+D+   + + M+ K   PD
Sbjct: 421 TPNIVTYNILIDIYGRMEKLDDMMKVFKFMQEKNCTPD 458



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 72/158 (45%), Gaps = 8/158 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+  +M   G++ N V   ++  A ++ GL  EA  L   +  KG  PD   +  +I A+
Sbjct: 340 ELLVEMEAAGISPNIVTYNELIAAYARAGLCDEAAALKKSLLSKGLCPDEFTYCTLISAF 399

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             A + ++AL  F  M  +   PN  TY +LI        G  + L D  K    M  K 
Sbjct: 400 NRAERYEKALETFTEMRKTNCTPNIVTYNILID-----IYGRMEKLDDMMKVFKFMQEKN 454

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
             P+  T+ ++ ++F     + E   + ++MK  G++P
Sbjct: 455 CTPDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMP 492



 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 67/142 (47%), Gaps = 6/142 (4%)

Query: 106 ALQLFAQIK-DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           AL+LF  +K D+ +  DV A+T++I   + A +  E + +F  M   G   NA TY V++
Sbjct: 196 ALELFESLKQDESYSLDVYAYTSLISILSRARRFDEGITLFETMQREGQRGNAVTYNVML 255

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
                  D   +I    Q    EM    + P+  TY  +  A ++     EA  L Q+MK
Sbjct: 256 DLYGKRGDSWDRI----QSLFQEMKDLEISPDDYTYNTMITACIQNSHCQEALRLFQEMK 311

Query: 225 AKGFVPDEKAVKEALIDKRGQG 246
             G  P+ +    AL+D  G+G
Sbjct: 312 EAGCCPN-RVTYNALLDVYGKG 332



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 5/136 (3%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
           A  K G+ +EA     Q+ D GH PD+    A+I   A  G  + A+++   +  + + P
Sbjct: 609 AYCKCGMDNEAQLALNQLYDNGHSPDIKVFNAMISMCAKRGWIERAVKLLEEIRKAQLKP 668

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY  L+     +  G   +   A++ + EM   G  PN  TY  +  ++ +  ++D+
Sbjct: 669 DGVTYNCLM-----SMYGREGMYYKAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMDD 723

Query: 216 ARGLLQQMKAKGFVPD 231
           A  +   M A    PD
Sbjct: 724 AARVFGDMVAARVRPD 739



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 69/157 (43%), Gaps = 14/157 (8%)

Query: 91  VKMFDAL----SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFM 146
           +K+F+A+    +K G    A++L  +I+     PD V +  ++  Y   G   +A  V  
Sbjct: 635 IKVFNAMISMCAKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMSMYGREGMYYKAEEVMS 694

Query: 147 RMLASGVAPNAYTYAVLIKGLAAAA--DGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVF 204
            M  +G APN  TY  L+         D  A++ GD       MV   +RP+  T+  + 
Sbjct: 695 EMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGD-------MVAARVRPDNFTFNTLV 747

Query: 205 EAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
            ++       EA  +++ M   G  P +   K AL+D
Sbjct: 748 GSYSSLGLYKEALSVIEYMTEHGCQPTQITFK-ALLD 783



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/130 (20%), Positives = 68/130 (52%), Gaps = 7/130 (5%)

Query: 80  KMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGK 139
           +++ +G+T N   +     ++G+ ++A ++ ++++  G  P+++ +  ++ +Y   G+  
Sbjct: 665 QLKPDGVTYNC--LMSMYGREGMYYKAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMD 722

Query: 140 EALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGT 199
           +A RVF  M+A+ V P+ +T+  L+   ++       +  +A   +  M   G +P   T
Sbjct: 723 DAARVFGDMVAARVRPDNFTFNTLVGSYSSLG-----LYKEALSVIEYMTEHGCQPTQIT 777

Query: 200 YTAVFEAFVR 209
           + A+ + + R
Sbjct: 778 FKALLDGYNR 787



 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/214 (21%), Positives = 84/214 (39%), Gaps = 36/214 (16%)

Query: 73  NLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           ++ ++F  M+ +  T + V    +  +    G+  E   +F ++K  G+MP V     +I
Sbjct: 442 DMMKVFKFMQEKNCTPDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILI 501

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA--------------------- 168
           E Y   G    ++ ++  +L +G+ P   T+A L+  LA                     
Sbjct: 502 ECYGRCGYVDYSVDIYKGLLRTGLQPTVPTFAALMASLAREGRWQQCEKVSQEMAEAGLQ 561

Query: 169 ---AAADG------NAKILGDAQKYLMEMVGKGMRPNAGTYTAVFE-AFVRAQKVDEARG 218
              A   G      N+      +KY+ E+     +P +G     F  A+ +    +EA+ 
Sbjct: 562 LSDACHAGLIHSYANSGQFFQLRKYIDELEKSAKQPLSGILCKTFVLAYCKCGMDNEAQL 621

Query: 219 LLQQMKAKGFVPDEKAVKE--ALIDKRGQGFRGV 250
            L Q+   G  PD K      ++  KRG   R V
Sbjct: 622 ALNQLYDNGHSPDIKVFNAMISMCAKRGWIERAV 655



 Score = 39.3 bits (90), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 3/95 (3%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+  +MR  G   N +    +  + +K G   +A ++F  +      PD      ++ +
Sbjct: 690 EEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVAARVRPDNFTFNTLVGS 749

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKG 166
           Y+S G  KEAL V   M   G  P   T+  L+ G
Sbjct: 750 YSSLGLYKEALSVIEYMTEHGCQPTQITFKALLDG 784


>gi|326533642|dbj|BAK05352.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 13/175 (7%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F +M+  GL  N V       +L K G + EA + F  +  KGH PD+ ++  ++  Y
Sbjct: 356 KMFREMKKRGLIPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHKPDIFSYCTLLHGY 415

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           AS G   + + +F  M ++G+A N + + +LI   A        ++ DA     EM  +G
Sbjct: 416 ASEGCFADMIGLFNSMKSNGIAANCHVFTILIHAYAKRG-----MVDDAMLIFTEMQQQG 470

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGF 247
           + P+  TY+ V   F R  ++ +A     QM A+G  P+  AV  ++I    QGF
Sbjct: 471 VSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVARGIQPN-TAVYSSII----QGF 520



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 79/160 (49%), Gaps = 10/160 (6%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKG--HMPDVVAHTAVIEA 131
           + H+M   G   NAV    +  AL  + ++  AL L   +  +G    PDVVA++ VI  
Sbjct: 215 LLHRMSELGCVPNAVSYSIVLKALCDNSMSQRALDLLQMMAKQGGACSPDVVAYSTVIHG 274

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           + + G+  +A  +F  M   GV P+  TY ++I  L       A+ +  A+  L +M   
Sbjct: 275 FFNEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALC-----KARAMDKAELVLRQMTTD 329

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G +P+  TY+ +   +    ++ EA  + ++MK +G +P+
Sbjct: 330 GAQPDTVTYSCMIHGYATLGRLKEAAKMFREMKKRGLIPN 369



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 38/148 (25%), Positives = 80/148 (54%), Gaps = 9/148 (6%)

Query: 77  IFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F+ M++ G+  N      +  A +K G+  +A+ +F +++ +G  PDVV ++ VI  ++
Sbjct: 427 LFNSMKSNGIAANCHVFTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISTFS 486

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G+  +A+  F +M+A G+ PN   Y+ +I+G           L  A++ + EM+ KG+
Sbjct: 487 RMGRLTDAMEKFNQMVARGIQPNTAVYSSIIQGFCMHGG-----LVKAKELVSEMINKGI 541

Query: 194 -RPNAGTYTAVFEAFVRAQKVDEARGLL 220
            RP+   +++V  +  +  +V +A  + 
Sbjct: 542 PRPDIVFFSSVINSLCKDGRVMDAHDIF 569



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
            +FH+M  +G+  + V    + DAL K     +A  +  Q+   G  PD V ++ +I  Y
Sbjct: 286 SLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTDGAQPDTVTYSCMIHGY 345

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           A+ G+ KEA ++F  M   G+ PN  T    +  L     G +K   +A ++   M  KG
Sbjct: 346 ATLGRLKEAAKMFREMKKRGLIPNIVTCNSFLASL--CKHGRSK---EAAEFFDSMTAKG 400

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +P+  +Y  +   +       +  GL   MK+ G   +
Sbjct: 401 HKPDIFSYCTLLHGYASEGCFADMIGLFNSMKSNGIAAN 439



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 71/158 (44%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +M T+G   + V    M    +  G   EA ++F ++K +G +P++V   + + +  
Sbjct: 322 VLRQMTTDGAQPDTVTYSCMIHGYATLGRLKEAAKMFREMKKRGLIPNIVTCNSFLASLC 381

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G+ KEA   F  M A G  P+ ++Y  L+ G A+          D       M   G+
Sbjct: 382 KHGRSKEAAEFFDSMTAKGHKPDIFSYCTLLHGYASEG-----CFADMIGLFNSMKSNGI 436

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             N   +T +  A+ +   VD+A  +  +M+ +G  PD
Sbjct: 437 AANCHVFTILIHAYAKRGMVDDAMLIFTEMQQQGVSPD 474



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 60/132 (45%), Gaps = 5/132 (3%)

Query: 100 DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYT 159
           +G T +A  LF ++  +G  PDVV +  +I+A   A    +A  V  +M   G  P+  T
Sbjct: 278 EGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTDGAQPDTVT 337

Query: 160 YAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGL 219
           Y+ +I G A         L +A K   EM  +G+ PN  T  +   +  +  +  EA   
Sbjct: 338 YSCMIHGYATLGR-----LKEAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRSKEAAEF 392

Query: 220 LQQMKAKGFVPD 231
              M AKG  PD
Sbjct: 393 FDSMTAKGHKPD 404



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 69/157 (43%), Gaps = 9/157 (5%)

Query: 75  QEIFHKMRTEGLTNNAVKMF----DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           +E+  +M  +G+    +  F    ++L KDG   +A  +F    D G  P V+   ++I+
Sbjct: 530 KELVSEMINKGIPRPDIVFFSSVINSLCKDGRVMDAHDIFDLATDIGERPGVITFNSLID 589

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
            Y   G+  +A ++   M   GV P+  TY  L+ G       N +I  D      EM  
Sbjct: 590 GYCLVGKMDKAFKILDAMEVVGVEPDIVTYNTLLDGYFK----NGRI-NDGLTLFREMQR 644

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
           KG++PN  TY  +     RA +   AR    +M   G
Sbjct: 645 KGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESG 681



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 56/131 (42%), Gaps = 5/131 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D     G   +A ++   ++  G  PD+V +  +++ Y   G+  + L +F  M   G
Sbjct: 587 LIDGYCLVGKMDKAFKILDAMEVVGVEPDIVTYNTLLDGYFKNGRINDGLTLFREMQRKG 646

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V PN  TY +++ GL  A    A     A+K   EM+  G       Y  +     R   
Sbjct: 647 VKPNTVTYGIMLAGLFRAGRTVA-----ARKKFHEMIESGTTVTVSIYGIILGGLCRNNC 701

Query: 213 VDEARGLLQQM 223
            DEA  L Q++
Sbjct: 702 ADEAIILFQKL 712



 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/150 (22%), Positives = 67/150 (44%), Gaps = 7/150 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   K+G  ++ L LF +++ KG  P+ V +  ++     AG+   A + F  M+ SG
Sbjct: 622 LLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESG 681

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK-GMRPNAGTYTAVFEAFVRAQ 211
                  Y +++ GL      +  I+      L + +G   ++ +      +  A  + Q
Sbjct: 682 TTVTVSIYGIILGGLCRNNCADEAII------LFQKLGTMNVKFSITILNTMINAMYKVQ 735

Query: 212 KVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           + +EA+ L   + A G +P+E      +I+
Sbjct: 736 RKEEAKELFATISASGLLPNESTYGVMIIN 765



 Score = 38.5 bits (88), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 60/152 (39%), Gaps = 8/152 (5%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           FH+M   G T        +   L ++    EA+ LF ++        +     +I A   
Sbjct: 674 FHEMIESGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSITILNTMINAMYK 733

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
             + +EA  +F  + ASG+ PN  TY V+I  L    DG  +   DA      M   G+ 
Sbjct: 734 VQRKEEAKELFATISASGLLPNESTYGVMIINL--LKDGGVE---DANNMFSSMEKSGIV 788

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK 226
           P +     +    +   ++ +A   L ++  K
Sbjct: 789 PGSRLLNRIIRMLLEKGEIAKAGNYLSKVDGK 820


>gi|115489040|ref|NP_001067007.1| Os12g0557800 [Oryza sativa Japonica Group]
 gi|113649514|dbj|BAF30026.1| Os12g0557800 [Oryza sativa Japonica Group]
          Length = 682

 Score = 85.1 bits (209), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 86/175 (49%), Gaps = 11/175 (6%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +EI  +M+ +G   N V    +    SK G  H A  +   + + G MPD++  T++I+ 
Sbjct: 439 EEIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNAKVVLKMLMEHGFMPDIITFTSLIDG 498

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
             +  Q  +A   F  M   GV PNA TY VL+  L +A   N  I       L +M   
Sbjct: 499 LCNTHQLDDAFVCFEEMAEWGVRPNAQTYNVLMHTLCSAGHVNKAI-----DLLNKMKID 553

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE---KAVKEALIDKR 243
           G+ P+A ++ A+  +F R +KVD+A  +   M   G VPD     ++ +AL D+R
Sbjct: 554 GVTPDAYSFNALILSFCRMRKVDKAEDIFNDMVRFGVVPDSYTYNSLIKALCDER 608



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M   LSK  +  EA++   ++  +G++ D  A   V+       +  +   +    + +G
Sbjct: 320 MLYCLSKKDMAKEAVEFEKRMSARGYLLDSTAFGIVMSCALKCLEVSDLCELLDSFIKNG 379

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P    Y ++IK L      N K    A  YL  MV KG+  +  +Y  V + FV+A  
Sbjct: 380 GNPGFDVYIMVIKSLL-----NCKNFSKANHYLGHMVLKGLLSSVMSYNMVIDCFVKAGA 434

Query: 213 VDEARGLLQQMKAKGFVPD 231
           VD+A  ++++M+ KGF+P+
Sbjct: 435 VDKAEEIVKEMQDKGFLPN 453



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 80/156 (51%), Gaps = 11/156 (7%)

Query: 81  MRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140
            R +  T N+  +   + + G+  EA++L  Q++ +G  P+V  +T +++ + +AG+ +E
Sbjct: 205 CRPDHFTYNS--LVHGVCRRGIVDEAVRLVRQMEGEGIRPNVFTYTMLVDGFCNAGRVEE 262

Query: 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK--GMRPNAG 198
           A R+  +M   GVAP+  TY  L+ G+    + +      A + L + +G    + P+A 
Sbjct: 263 AFRMLDKMKEKGVAPSEATYRTLVHGVFRCLERD-----KAYRMLSDWLGHETSLHPSA- 316

Query: 199 TYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
            +T ++    +     EA    ++M A+G++ D  A
Sbjct: 317 CHTMLY-CLSKKDMAKEAVEFEKRMSARGYLLDSTA 351



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 10/142 (7%)

Query: 85  GLTNNAVKMFDALSKDGL-----THEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGK 139
           GL   A ++F  + + GL      + A   F Q+   G  PD   + +++      G   
Sbjct: 167 GLARYAHEVFVQMPRLGLRPSTAVYTAYLRFQQMPADGCRPDHFTYNSLVHGVCRRGIVD 226

Query: 140 EALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGT 199
           EA+R+  +M   G+ PN +TY +L+ G       NA  + +A + L +M  KG+ P+  T
Sbjct: 227 EAVRLVRQMEGEGIRPNVFTYTMLVDGFC-----NAGRVEEAFRMLDKMKEKGVAPSEAT 281

Query: 200 YTAVFEAFVRAQKVDEARGLLQ 221
           Y  +     R  + D+A  +L 
Sbjct: 282 YRTLVHGVFRCLERDKAYRMLS 303



 Score = 43.9 bits (102), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 19/124 (15%)

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
           +L A+++  G         A++E++   G  + A  VF++M   G+ P+   Y   ++  
Sbjct: 139 RLVAEVRGCGCEVSEELVCALVESWGRLGLARYAHEVFVQMPRLGLRPSTAVYTAYLR-- 196

Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
                              +M   G RP+  TY ++     R   VDEA  L++QM+ +G
Sbjct: 197 -----------------FQQMPADGCRPDHFTYNSLVHGVCRRGIVDEAVRLVRQMEGEG 239

Query: 228 FVPD 231
             P+
Sbjct: 240 IRPN 243



 Score = 37.7 bits (86), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 27/119 (22%), Positives = 53/119 (44%), Gaps = 6/119 (5%)

Query: 113 IKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172
           IK+ G+ P    +  VI++  +     +A      M+  G+  +  +Y ++I     A  
Sbjct: 376 IKNGGN-PGFDVYIMVIKSLLNCKNFSKANHYLGHMVLKGLLSSVMSYNMVIDCFVKAG- 433

Query: 173 GNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
                +  A++ + EM  KG  PN  T+  +   + +   V  A+ +L+ +   GF+PD
Sbjct: 434 ----AVDKAEEIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNAKVVLKMLMEHGFMPD 488


>gi|357521609|ref|XP_003631093.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525115|gb|AET05569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 788

 Score = 85.1 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/139 (33%), Positives = 75/139 (53%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L KDG   +AL L +QI ++G + D V + ++I+   S G+ +E  ++  +M+   
Sbjct: 201 LIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVREN 260

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V P+ YT+ +LI  L        +IL +AQ  L  M  +G +P+  TY A+ E +   + 
Sbjct: 261 VDPDDYTFNILIDALCK----EGRIL-EAQGVLAMMSKRGEKPDIVTYNALMEGYCSREN 315

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V EAR L  +M  +G  PD
Sbjct: 316 VHEARELFNRMVKRGLEPD 334



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DAL K+G   EA  + A +  +G  PD+V + A++E Y S     EA  +F RM+  G
Sbjct: 271 LIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRG 330

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+   Y VLI G         K++ +A     E+  K + P   +Y ++ +    + +
Sbjct: 331 LEPDVLNYNVLIDGYC-----KTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGR 385

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +   + LL +M      PD
Sbjct: 386 ISHVKKLLDEMHGSAQPPD 404



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 6/149 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L   G      +L  ++      PDVV +  +I+A    G+  EAL V + M+  G
Sbjct: 376 LIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKG 435

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V PN  TY  ++ G     + N      A+     MV  G+ P+   Y  +   + + + 
Sbjct: 436 VKPNIVTYNAMMDGYCLRNNVNV-----AKDIFNRMVKSGLEPDILNYNVLINGYCKTEM 490

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALID 241
           VDEA  L ++M+ K  +PD  A   +LID
Sbjct: 491 VDEAIVLFKEMRHKNLIPD-IASYNSLID 518



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/160 (25%), Positives = 80/160 (50%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+F++M   GL  + +    + D   K  +  EA+ LF ++ +K  +P + ++ ++I+ 
Sbjct: 320 RELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDG 379

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
             ++G+     ++   M  S   P+  TY +LI  L        +IL +A   L+ M+ K
Sbjct: 380 LCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCK----EGRIL-EALGVLVMMMKK 434

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G++PN  TY A+ + +     V+ A+ +  +M   G  PD
Sbjct: 435 GVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPD 474



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/169 (28%), Positives = 72/169 (42%), Gaps = 31/169 (18%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DAL K+G   EAL +   +  KG  P++V + A+++ Y        A  +F RM+ SG
Sbjct: 411 LIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSG 470

Query: 153 VAPNAYTYAVLIKGLAAA----------------------ADGNAKILG--------DAQ 182
           + P+   Y VLI G                          A  N+ I G          Q
Sbjct: 471 LEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQ 530

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + L EM   G  P+  TY  + +AF + Q  D+A  L +Q+  +G  PD
Sbjct: 531 ELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQI-VEGIWPD 578



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/169 (26%), Positives = 81/169 (47%), Gaps = 9/169 (5%)

Query: 73  NLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           ++QE+  +M   G + + +    + DA  K     +A+ LF QI + G  PD   + A++
Sbjct: 528 HVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVE-GIWPDFYTNHAIV 586

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
           +      + K A      +L  G +PN  TY +LI  L    DG+    G+A   L +M 
Sbjct: 587 DNLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCK--DGS---FGEAMLLLSKME 641

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEA 238
                P+A T+  +    ++  + D+A  L ++M A+G V  EK++ ++
Sbjct: 642 DNDRPPDAITFEIIIGVLLQRNETDKAEKLREEMIARGLVNIEKSLNQS 690



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 50/197 (25%), Positives = 85/197 (43%), Gaps = 19/197 (9%)

Query: 54  PPPYDPFKKVVD------EEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTH 104
           PPP   F K++         PT       +F +++++G++ +      + +       T 
Sbjct: 52  PPPTSVFDKLLGAIVRMGHYPT----AISLFTQLQSKGISPSIATFTILINCYFHQSHTA 107

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
            A  L A I   G+ P++V    +I  +   G   +AL     +LA G   + +TY  LI
Sbjct: 108 FAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLI 167

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            GL+     N +I   A   L EM    ++PN   Y+A+ +   +   V +A GL  Q+ 
Sbjct: 168 NGLSK----NGQIKA-ALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIG 222

Query: 225 AKGFVPDEKAVKEALID 241
            +G + D      +LID
Sbjct: 223 ERGILLD-AVTYNSLID 238



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/160 (20%), Positives = 73/160 (45%), Gaps = 9/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           ++IF++M   GL  + +    + +   K  +  EA+ LF +++ K  +PD+ ++ ++I+ 
Sbjct: 460 KDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDG 519

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
             + G+      +   M  SG +P+  TY +L+         +  I       L   + +
Sbjct: 520 LCNLGRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAI------SLFRQIVE 573

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G+ P+  T  A+ +   + +K+  A   L+ +   G  P+
Sbjct: 574 GIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMHGCSPN 613



 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 5/133 (3%)

Query: 100 DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYT 159
           +G+  +AL     +  +G++ D   +  +I   +  GQ K AL +   M  S V PN   
Sbjct: 138 NGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVM 197

Query: 160 YAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGL 219
           Y+ LI GL    DG    + DA     ++  +G+  +A TY ++ +      +  E   L
Sbjct: 198 YSALIDGLCK--DG---FVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQL 252

Query: 220 LQQMKAKGFVPDE 232
           L +M  +   PD+
Sbjct: 253 LTKMVRENVDPDD 265


>gi|125537003|gb|EAY83491.1| hypothetical protein OsI_38705 [Oryza sativa Indica Group]
          Length = 696

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 86/175 (49%), Gaps = 11/175 (6%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +EI  +M+ +G   N V    +    SK G  H A  +   + + G MPD++  T++I+ 
Sbjct: 453 EEIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNAKVVLKMLMEHGFMPDIITFTSLIDG 512

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
             +  Q  +A   F  M   GV PNA TY VL+  L +A   N  I       L +M   
Sbjct: 513 LCNTHQLDDAFVCFEEMAEWGVRPNAQTYNVLMHTLCSAGHVNKAI-----DLLNKMKID 567

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE---KAVKEALIDKR 243
           G+ P+A ++ A+  +F R +KVD+A  +   M   G VPD     ++ +AL D+R
Sbjct: 568 GVTPDAYSFNALILSFCRMRKVDKAEDIFNDMVRFGVVPDSYTYNSLIKALCDER 622



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M   LSK  +  EA++   ++  +G++ D  A   V+       +  +   +    + +G
Sbjct: 334 MLYCLSKKDMAKEAVEFAKRMSARGYLLDSTAFGIVMSCSLKCLEVSDLCELLDSFIKNG 393

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P    Y ++IK L      N K    A  YL  MV KG+  +  +Y  V + FV+A  
Sbjct: 394 GNPGFDVYIMVIKSLL-----NCKNFSKANHYLGHMVLKGLLSSVMSYNMVIDCFVKAGA 448

Query: 213 VDEARGLLQQMKAKGFVPD 231
           VD+A  ++++M+ KGF+P+
Sbjct: 449 VDKAEEIVKEMQDKGFLPN 467



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 80/156 (51%), Gaps = 11/156 (7%)

Query: 81  MRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140
            R +  T N+  +   + + G+  EA++L  Q++ +G  P+V  +T +++ + +AG+ +E
Sbjct: 219 CRPDRFTYNS--LVHGVCRRGIVDEAVRLVRQMEGEGIRPNVFTYTMLVDGFCNAGRVEE 276

Query: 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK--GMRPNAG 198
           A R+  +M   GVAP+  TY  L+ G+    + +      A + L + +G    + P+A 
Sbjct: 277 AFRMLDKMKEKGVAPSEATYRTLVHGVFRCLERD-----KAYRMLSDWLGHETSLHPSA- 330

Query: 199 TYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
            +T ++    +     EA    ++M A+G++ D  A
Sbjct: 331 CHTMLY-CLSKKDMAKEAVEFAKRMSARGYLLDSTA 365



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 70/154 (45%), Gaps = 10/154 (6%)

Query: 72  RNLQEIFHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           R   E+F +M   GL   +  +++AL     + G    A   F Q+   G  PD   + +
Sbjct: 170 RYAHEVFVQMPRLGL-RPSTAVYNALIAASVRAGAVDTAYLRFQQMPADGCRPDRFTYNS 228

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           ++      G   EA+R+  +M   G+ PN +TY +L+ G       NA  + +A + L +
Sbjct: 229 LVHGVCRRGIVDEAVRLVRQMEGEGIRPNVFTYTMLVDGFC-----NAGRVEEAFRMLDK 283

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221
           M  KG+ P+  TY  +     R  + D+A  +L 
Sbjct: 284 MKEKGVAPSEATYRTLVHGVFRCLERDKAYRMLS 317



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 5/124 (4%)

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
           +L A+++  G         A++E++   G  + A  VF++M   G+ P+   Y  LI   
Sbjct: 139 RLVAEVRGCGCEVSEELVCALVESWGRLGLARYAHEVFVQMPRLGLRPSTAVYNALI--- 195

Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
             AA   A  +  A     +M   G RP+  TY ++     R   VDEA  L++QM+ +G
Sbjct: 196 --AASVRAGAVDTAYLRFQQMPADGCRPDRFTYNSLVHGVCRRGIVDEAVRLVRQMEGEG 253

Query: 228 FVPD 231
             P+
Sbjct: 254 IRPN 257


>gi|357498921|ref|XP_003619749.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494764|gb|AES75967.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 680

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 84/173 (48%), Gaps = 11/173 (6%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F +M  + +  N +    + D L K G    AL+L   + D+G  PD++ ++++++A 
Sbjct: 371 KLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYALELIDLMHDRGQQPDIITYSSILDAL 430

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
                  +A+ + +++   G+ PN YTY +LI GL          L DA+    +++ KG
Sbjct: 431 CKNHLVDKAIALLIKLKDQGIRPNMYTYTILIDGLCKGGR-----LEDARNIFEDLLVKG 485

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE---KAVKEALIDK 242
                 TYT + + F      DEA  LL +MK    +PD    + +  +L DK
Sbjct: 486 YNLTVNTYTVMIQGFCSHGLFDEALSLLSKMKDNSCIPDAITYEIIICSLFDK 538



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 76/135 (56%), Gaps = 5/135 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D++ KD   ++A  L++++  +    ++V ++A+I  +   G+ K+A+ +F +M +  
Sbjct: 216 IIDSMCKDKNVNDAFDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKMTSEN 275

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+ YT+ +L+   A   +G  K   +A+  L  M+ +G++P+  TY ++ + +    +
Sbjct: 276 INPDVYTFNILVD--AFCKEGRVK---EAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNE 330

Query: 213 VDEARGLLQQMKAKG 227
           V+ A+ +L  M  +G
Sbjct: 331 VNMAKSILNTMSHRG 345



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 68/137 (49%), Gaps = 5/137 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DAL K+ L  +A+ L  ++KD+G  P++  +T +I+     G+ ++A  +F  +L  G
Sbjct: 426 ILDALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILIDGLCKGGRLEDARNIFEDLLVKG 485

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
                 TY V+I+G  +       +  +A   L +M      P+A TY  +  +     +
Sbjct: 486 YNLTVNTYTVMIQGFCSHG-----LFDEALSLLSKMKDNSCIPDAITYEIIICSLFDKDE 540

Query: 213 VDEARGLLQQMKAKGFV 229
            D+A  LL++M  +G +
Sbjct: 541 NDKAEKLLREMITRGLL 557



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 81/191 (42%), Gaps = 24/191 (12%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F+KM +E +  +      + DA  K+G   EA    A +  +G  PD+V + ++++ Y 
Sbjct: 267 LFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYC 326

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
              +   A  +   M   GV     +Y ++I G         K++  A K   EM  K +
Sbjct: 327 LVNEVNMAKSILNTMSHRGVTATVRSYNIVINGFCK-----IKMVDQAMKLFKEMHHKQI 381

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD--------EKAVKEALIDK--- 242
            PN  TY ++ +   ++ ++  A  L+  M  +G  PD        +   K  L+DK   
Sbjct: 382 FPNVITYNSLIDGLCKSGRISYALELIDLMHDRGQQPDIITYSSILDALCKNHLVDKAIA 441

Query: 243 -----RGQGFR 248
                + QG R
Sbjct: 442 LLIKLKDQGIR 452



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K G T  AL+L  ++  K    DVV ++ +I++        +A  ++  M++  
Sbjct: 181 LINGLCKVGETRAALELLRRVDGKLVQLDVVMYSTIIDSMCKDKNVNDAFDLYSEMVSRR 240

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           ++ N  TY+ LI G           L DA     +M  + + P+  T+  + +AF +  +
Sbjct: 241 ISSNIVTYSALISGFCIVGK-----LKDAIGLFNKMTSENINPDVYTFNILVDAFCKEGR 295

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V EA+  L  M  +G  PD
Sbjct: 296 VKEAKNGLAMMMKQGIKPD 314



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 8/117 (6%)

Query: 80  KMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           K++ +G+  N      + D L K G   +A  +F  +  KG+   V  +T +I+ + S G
Sbjct: 445 KLKDQGIRPNMYTYTILIDGLCKGGRLEDARNIFEDLLVKGYNLTVNTYTVMIQGFCSHG 504

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
              EAL +  +M  +   P+A TY ++I  L    D N K    A+K L EM+ +G+
Sbjct: 505 LFDEALSLLSKMKDNSCIPDAITYEIIICSL-FDKDENDK----AEKLLREMITRGL 556


>gi|224095732|ref|XP_002310456.1| predicted protein [Populus trichocarpa]
 gi|222853359|gb|EEE90906.1| predicted protein [Populus trichocarpa]
          Length = 721

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 87/181 (48%), Gaps = 16/181 (8%)

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F +M+  G+  +      + D+  K G   +A   F +++  G  P+VV +TA+I AY
Sbjct: 243 QLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAY 302

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAA-----ADGNAKILG-------D 180
             + +  +A  V+  ML+ G  PN  TY  LI GL  A     A    KI+        D
Sbjct: 303 LKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCKAGKIEKASQIYKIMKKENVEIPD 362

Query: 181 AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
              +   + G    PN  TY A+ +   +A +V EAR LL+ M  +G  P+   V +ALI
Sbjct: 363 VDMHFRVVDGASNEPNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNH-VVYDALI 421

Query: 241 D 241
           D
Sbjct: 422 D 422



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 81/160 (50%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +++   M  EG   N V    + D   K G   EA ++F  + + G+ P+V  ++++I+ 
Sbjct: 399 RDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQEVFTTMLECGYDPNVYTYSSLIDR 458

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
                +   AL+V  +ML +  APN   Y  +I GL      +     +A K ++ M  K
Sbjct: 459 LFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTD-----EAYKLMVMMEEK 513

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G  PN  TYTA+ + F ++ +V++   LLQQM +KG  P+
Sbjct: 514 GCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKGCAPN 553



 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 112/238 (47%), Gaps = 22/238 (9%)

Query: 14  PSPKRSLRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKKVV-----DEEP 68
           PSP    RI N+ V+A  +    + + +  KK V    +  P Y  +  ++      EEP
Sbjct: 110 PSP----RIFNSLVHAYCRSGDYAYAYKLLKKMVQCGCQ--PGYVVYNILIGGICSSEEP 163

Query: 69  -TDPRNLQE-IFHKMRTEGLTNNAVKMFD---ALSKDGLTHEALQLFAQIKDKGHMPDVV 123
             D  +L E  + +M   G+  N V + +    L   G   +A  +  ++  KG +PD  
Sbjct: 164 GKDVLDLAEKAYGEMLEAGVVLNKVNISNFSRCLCGIGKFEKAYNVIREMMSKGFIPDTS 223

Query: 124 AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQK 183
            ++ VI    +A + ++A ++F  M  +G+AP+ Y Y  LI     A       +  A+ 
Sbjct: 224 TYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAG-----FIEQARN 278

Query: 184 YLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           +  EM   G  PN  TYTA+  A+++++KV +A  + + M +KG  P+      ALID
Sbjct: 279 WFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPN-IVTYTALID 335



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 9/159 (5%)

Query: 77  IFHKMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +M ++G    T+   K+   L       +A QLF ++K  G  PDV  +T +I+++ 
Sbjct: 209 VIREMMSKGFIPDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFC 268

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG  ++A   F  M   G APN  TY  LI      A   ++ +  A +    M+ KG 
Sbjct: 269 KAGFIEQARNWFDEMERDGCAPNVVTYTALIH-----AYLKSRKVSKANEVYEMMLSKGC 323

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF-VPD 231
            PN  TYTA+ +   +A K+++A  + + MK +   +PD
Sbjct: 324 TPNIVTYTALIDGLCKAGKIEKASQIYKIMKKENVEIPD 362



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 79/166 (47%), Gaps = 14/166 (8%)

Query: 53  LPPPYDP----FKKVVDEEPTDPR-NLQ-EIFHKMRTEGLTNNAV---KMFDALSKDGLT 103
           L   YDP    +  ++D    D R +L  ++  KM       N V   +M D L K G T
Sbjct: 441 LECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKT 500

Query: 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
            EA +L   +++KG  P+VV +TA+I+ +  +G+ ++ L +  +M + G APN  TY VL
Sbjct: 501 DEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKGCAPNFVTYRVL 560

Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
           I    +       +L +A K L EM       +   Y  V E F R
Sbjct: 561 INHCCSTG-----LLDEAHKLLEEMKQTYWPRHVAGYRKVIEGFNR 601



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 69/153 (45%), Gaps = 8/153 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           QE+F  M   G   N      + D L KD     AL++ +++ +    P+VV +T +I+ 
Sbjct: 434 QEVFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDG 493

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G+  EA ++ + M   G  PN  TY  +I G      G +  +    + L +M  K
Sbjct: 494 LCKVGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGF-----GKSGRVEKCLELLQQMSSK 548

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           G  PN  TY  +         +DEA  LL++MK
Sbjct: 549 GCAPNFVTYRVLINHCCSTGLLDEAHKLLEEMK 581



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 64/135 (47%), Gaps = 8/135 (5%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
           +L K G   EAL L   ++ +  +PD V +T +I     A   +EA+    RM AS   P
Sbjct: 19  SLCKSGKWREALSL---LEKEEFVPDTVLYTKMISGLCEASLFEEAMDFLTRMRASSCLP 75

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           N  TY +L+ G       N + LG  ++ L  M+ +G  P+   + ++  A+ R+     
Sbjct: 76  NVLTYRILLCGCL-----NKEKLGRCKRILSMMITEGCYPSPRIFNSLVHAYCRSGDYAY 130

Query: 216 ARGLLQQMKAKGFVP 230
           A  LL++M   G  P
Sbjct: 131 AYKLLKKMVQCGCQP 145



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 75/177 (42%), Gaps = 25/177 (14%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDK--------------- 116
            E++  M ++G T N V    + D L K G   +A Q++  +K +               
Sbjct: 312 NEVYEMMLSKGCTPNIVTYTALIDGLCKAGKIEKASQIYKIMKKENVEIPDVDMHFRVVD 371

Query: 117 --GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174
              + P+V  + A+++    A Q KEA  +   M   G  PN   Y  LI G   A    
Sbjct: 372 GASNEPNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGK-- 429

Query: 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              L +AQ+    M+  G  PN  TY+++ +   + +++D A  +L +M      P+
Sbjct: 430 ---LDEAQEVFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPN 483



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/124 (22%), Positives = 59/124 (47%)

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
           ++ + +  +G  P      +++ AY  +G    A ++  +M+  G  P    Y +LI G+
Sbjct: 98  RILSMMITEGCYPSPRIFNSLVHAYCRSGDYAYAYKLLKKMVQCGCQPGYVVYNILIGGI 157

Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
            ++ +    +L  A+K   EM+  G+  N    +          K ++A  ++++M +KG
Sbjct: 158 CSSEEPGKDVLDLAEKAYGEMLEAGVVLNKVNISNFSRCLCGIGKFEKAYNVIREMMSKG 217

Query: 228 FVPD 231
           F+PD
Sbjct: 218 FIPD 221


>gi|302792250|ref|XP_002977891.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
 gi|300154594|gb|EFJ21229.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
          Length = 385

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 78/158 (49%), Gaps = 9/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQ-IKDKGHMPDVVAHTAVIEAY 132
           +F ++   G   + V    + D L K+G   EA+ LF + IK    MP+ V + ++I  +
Sbjct: 111 VFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGF 170

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+  EA+ +  RM  +G +P+  TY  L+ G    A      L DA   L +M  KG
Sbjct: 171 CRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLAR-----LDDAYDLLNQMTRKG 225

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           + PN  T+T++ +   R  ++ +A  +L +M+ K   P
Sbjct: 226 LTPNVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSP 263



 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 6/140 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +     K   + +AL++F Q+  +G  PDVV ++ +I+     G+ KEA+ +F RM+ SG
Sbjct: 95  LITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSG 154

Query: 153 -VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
              PN  TY  LI G           + +A   L  M   G  P+  TYT +   F +  
Sbjct: 155 SCMPNTVTYNSLISGFCRMGK-----MDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLA 209

Query: 212 KVDEARGLLQQMKAKGFVPD 231
           ++D+A  LL QM  KG  P+
Sbjct: 210 RLDDAYDLLNQMTRKGLTPN 229



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 67/140 (47%), Gaps = 6/140 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L K     EA  L  ++   G +PD+  +T +I  +  + +  +ALRVF +++A G
Sbjct: 60  LISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARG 119

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG-MRPNAGTYTAVFEAFVRAQ 211
             P+  TY+ LI GL          L +A      M+  G   PN  TY ++   F R  
Sbjct: 120 FRPDVVTYSCLIDGLCKEGR-----LKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMG 174

Query: 212 KVDEARGLLQQMKAKGFVPD 231
           K+DEA  LL++M   G  PD
Sbjct: 175 KMDEAMNLLERMAETGSSPD 194



 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 6/134 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +     + G   EA+ L  ++ + G  PDVV +T ++  +    +  +A  +  +M   G
Sbjct: 166 LISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKG 225

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN  T+  L+ GL          L DA   L EM  K   P   TY  + + + R  +
Sbjct: 226 LTPNVVTFTSLMDGLC-----RENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRVNQ 280

Query: 213 VDEARG-LLQQMKA 225
           ++EAR  +L++M  
Sbjct: 281 LEEARKFMLEEMDC 294



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 78/160 (48%), Gaps = 11/160 (6%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++ ++M  +GLT N V    + D L ++    +A+ +  +++ K   P V  +  +++ Y
Sbjct: 216 DLLNQMTRKGLTPNVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGY 275

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               Q +EA R FM +      PN  ++ ++I+GL      +     +A + + E   + 
Sbjct: 276 CRVNQLEEA-RKFM-LEEMDCPPNVVSFNIMIRGLCKVNRSS-----EAMELVEEARRRR 328

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQM-KAKGFVPD 231
             P+   YT V +   R +KVDEA  + ++M +  G +P+
Sbjct: 329 CNPDVVMYTTVIDVLCREKKVDEACRVYRKMLEEPGCLPN 368



 Score = 46.6 bits (109), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 1/72 (1%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS- 151
           M   L K   + EA++L  + + +   PDVV +T VI+      +  EA RV+ +ML   
Sbjct: 304 MIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDVLCREKKVDEACRVYRKMLEEP 363

Query: 152 GVAPNAYTYAVL 163
           G  PN+ TY+  
Sbjct: 364 GCLPNSITYSTF 375


>gi|356551209|ref|XP_003543970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 687

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/139 (34%), Positives = 76/139 (54%), Gaps = 5/139 (3%)

Query: 94  FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGV 153
            D L K G   EA +L  ++   G +PD V +T++I A+  AG  ++A  +F+ ML+ G+
Sbjct: 489 IDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARALFLEMLSKGI 548

Query: 154 APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV 213
            P+  TY VLI   + A  G  K+   A  +  EM  KG+ PN  TY A+     + +K+
Sbjct: 549 FPSVVTYTVLIH--SYAVRGRLKL---AILHFFEMHEKGVHPNVITYNALINGLCKVRKM 603

Query: 214 DEARGLLQQMKAKGFVPDE 232
           D+A     +M+AKG  P++
Sbjct: 604 DQAYNFFAEMQAKGISPNK 622



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 76/160 (47%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+++ M   G+    V    M D+  K G+  EALQL  Q++  G  P+ V +  ++  
Sbjct: 187 REVYNVMVECGICPTVVTYNTMLDSFCKKGMVQEALQLLFQMQAMGCSPNDVTYNVLVNG 246

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
            + +G+ ++A  +   ML  G+  + YTY  LI+G           + +A +   EM+ +
Sbjct: 247 LSHSGEMEQAKELIQDMLRLGLEVSVYTYDPLIRGYCEKGQ-----IEEASRLGEEMLSR 301

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G  P   TY  +     +  +V +AR LL  M  K  +PD
Sbjct: 302 GAVPTVVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPD 341



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 77/184 (41%), Gaps = 10/184 (5%)

Query: 53  LPPPYDPFKKVVD--EEPTDPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEAL 107
            PP    +   +D   +  + +   E+  KM   GL  + V    +  A    G   +A 
Sbjct: 478 FPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKAR 537

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
            LF ++  KG  P VV +T +I +YA  G+ K A+  F  M   GV PN  TY  LI GL
Sbjct: 538 ALFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGL 597

Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
                   + +  A  +  EM  KG+ PN  TYT +           EA  L + M  + 
Sbjct: 598 C-----KVRKMDQAYNFFAEMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLDRE 652

Query: 228 FVPD 231
             PD
Sbjct: 653 IQPD 656



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 84/158 (53%), Gaps = 9/158 (5%)

Query: 77  IFHKMRTEGL---TNNAVKMFDAL-SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +F+KM ++GL     N  ++   L  +D     A +++  + + G  P VV +  +++++
Sbjct: 153 VFYKMVSKGLLPDVKNCNRVLRLLRDRDNNIDVAREVYNVMVECGICPTVVTYNTMLDSF 212

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G  +EAL++  +M A G +PN  TY VL+ GL+ + +     +  A++ + +M+  G
Sbjct: 213 CKKGMVQEALQLLFQMQAMGCSPNDVTYNVLVNGLSHSGE-----MEQAKELIQDMLRLG 267

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           +  +  TY  +   +    +++EA  L ++M ++G VP
Sbjct: 268 LEVSVYTYDPLIRGYCEKGQIEEASRLGEEMLSRGAVP 305



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 62/139 (44%), Gaps = 5/139 (3%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K G   +A +L   + +K  MPD+V++  +I  Y   G   EA  +F  +    +AP
Sbjct: 316 GLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRYRSLAP 375

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY  LI GL    D     L  A +   EM+  G  P+  T+T     F +   +  
Sbjct: 376 SVVTYNTLIDGLCRLGD-----LDVAMRLKDEMIKHGPDPDVFTFTTFVRGFCKMGNLPM 430

Query: 216 ARGLLQQMKAKGFVPDEKA 234
           A+ L  +M  +G  PD  A
Sbjct: 431 AKELFDEMLNRGLQPDRFA 449



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 63/125 (50%), Gaps = 5/125 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A +LF ++ ++G  PD  A+   I      G   +A  +   MLA G  P+  TY V I 
Sbjct: 431 AKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFID 490

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           GL     GN K   +A + + +M+  G+ P+  TYT++  A + A  + +AR L  +M +
Sbjct: 491 GLHKL--GNLK---EASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARALFLEMLS 545

Query: 226 KGFVP 230
           KG  P
Sbjct: 546 KGIFP 550



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 62/127 (48%), Gaps = 5/127 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA  LFA+++ +   P VV +  +I+     G    A+R+   M+  G  P+ +T+   +
Sbjct: 360 EAFLLFAELRYRSLAPSVVTYNTLIDGLCRLGDLDVAMRLKDEMIKHGPDPDVFTFTTFV 419

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           +G     +     L  A++   EM+ +G++P+   Y       ++     +A G+ ++M 
Sbjct: 420 RGFCKMGN-----LPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEML 474

Query: 225 AKGFVPD 231
           A+GF PD
Sbjct: 475 ARGFPPD 481



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/151 (22%), Positives = 73/151 (48%), Gaps = 8/151 (5%)

Query: 72  RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R  + +F +M ++G+  + V    +  + +  G    A+  F ++ +KG  P+V+ + A+
Sbjct: 534 RKARALFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNAL 593

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I       +  +A   F  M A G++PN YTY +LI       + N     +A +   +M
Sbjct: 594 INGLCKVRKMDQAYNFFAEMQAKGISPNKYTYTILIN-----ENCNLGHWQEALRLYKDM 648

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGL 219
           + + ++P++ T+ ++ +   +  K+   R L
Sbjct: 649 LDREIQPDSCTHRSLLKHLNKDYKLHVVRHL 679



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 71/155 (45%), Gaps = 19/155 (12%)

Query: 93  MFDALSKDGLTHEA---LQLFAQIKDKGHMPDVVAHTAV------------IEAYASAGQ 137
           + D L+++GL   A   ++    +K +  + DVV+ + V            +  Y     
Sbjct: 87  ILDILARNGLMRSAYCVMEKVVSVKMENGVIDVVSSSEVSMPSVKLILDLLLWIYVKKSL 146

Query: 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA 197
            ++ L VF +M++ G+ P+      +++ L    D N  +   A++    MV  G+ P  
Sbjct: 147 LEKCLLVFYKMVSKGLLPDVKNCNRVLR-LLRDRDNNIDV---AREVYNVMVECGICPTV 202

Query: 198 GTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
            TY  + ++F +   V EA  LL QM+A G  P++
Sbjct: 203 VTYNTMLDSFCKKGMVQEALQLLFQMQAMGCSPND 237


>gi|356561677|ref|XP_003549106.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 511

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 78/158 (49%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F+ M   G+T +      M + L K  +  EA+ LF ++K K  +PD+V + ++I+   
Sbjct: 324 VFYSMAQRGVTPDVQCYTNMINGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLC 383

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
                + A+ +  RM   G+ P+ Y+Y +L+ GL  +       L DA++    ++ KG 
Sbjct: 384 KNHHLERAIALCKRMKEQGIQPDVYSYTILLDGLCKSGR-----LEDAKEIFQRLLAKGY 438

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             N   YT +     +A   DEA  L  +M+ KG +PD
Sbjct: 439 HLNVHAYTVLINRLCKAGFFDEALDLKSKMEDKGCMPD 476



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 74/158 (46%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           + ++M+ + +  N      + DALSK+G   EA  L A +      PDV  + ++I+ Y 
Sbjct: 254 LLNEMKLKNINPNVCTFNILIDALSKEGKMKEAKILLAVMMKACIKPDVFTYNSLIDGYF 313

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
              + K A  VF  M   GV P+   Y  +I GL        K++ +A     EM  K M
Sbjct: 314 LVDEVKHAKYVFYSMAQRGVTPDVQCYTNMINGLC-----KTKMVDEAMSLFEEMKHKNM 368

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            P+  TY ++ +   +   ++ A  L ++MK +G  PD
Sbjct: 369 IPDIVTYNSLIDGLCKNHHLERAIALCKRMKEQGIQPD 406



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 84/171 (49%), Gaps = 15/171 (8%)

Query: 62  KVVDEEPTDPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGH 118
           K+VDE          +F +M+ + +  + V    + D L K+     A+ L  ++K++G 
Sbjct: 351 KMVDEA-------MSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALCKRMKEQGI 403

Query: 119 MPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKIL 178
            PDV ++T +++    +G+ ++A  +F R+LA G   N + Y VLI  L  A        
Sbjct: 404 QPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKGYHLNVHAYTVLINRLCKAG-----FF 458

Query: 179 GDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFV 229
            +A     +M  KG  P+A T+  +  A     + D+A  +L++M A+G +
Sbjct: 459 DEALDLKSKMEDKGCMPDAVTFDIIIRALFEKDENDKAEKILREMIARGLL 509



 Score = 70.1 bits (170), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 81/193 (41%), Gaps = 33/193 (17%)

Query: 79  HKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQG 138
           H ++ + +  N +   ++L K+ L  +A  +++++  KG  PDVV +T +I  +   G  
Sbjct: 191 HSVKPDVVMYNTI--INSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGHL 248

Query: 139 KEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD-GNAKIL------------------- 178
           KEA  +   M    + PN  T+ +LI  L+       AKIL                   
Sbjct: 249 KEAFSLLNEMKLKNINPNVCTFNILIDALSKEGKMKEAKILLAVMMKACIKPDVFTYNSL 308

Query: 179 ----------GDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
                       A+     M  +G+ P+   YT +     + + VDEA  L ++MK K  
Sbjct: 309 IDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNMINGLCKTKMVDEAMSLFEEMKHKNM 368

Query: 229 VPDEKAVKEALID 241
           +PD      +LID
Sbjct: 369 IPD-IVTYNSLID 380



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 61/139 (43%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K G T    +L  +++     PDVV +  +I +        +A  V+  M+  G
Sbjct: 168 LINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKG 227

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           ++P+  TY  LI G           L +A   L EM  K + PN  T+  + +A  +  K
Sbjct: 228 ISPDVVTYTTLIHGFCIMGH-----LKEAFSLLNEMKLKNINPNVCTFNILIDALSKEGK 282

Query: 213 VDEARGLLQQMKAKGFVPD 231
           + EA+ LL  M      PD
Sbjct: 283 MKEAKILLAVMMKACIKPD 301



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 5/126 (3%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
            + LF Q +  G  PD+   + +I  +        A  VF  +L  G  PNA T   LIK
Sbjct: 76  VISLFKQFEPNGITPDLCTLSILINCFCHQAHITLAFSVFANILKRGFHPNAITLNTLIK 135

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           GL    +     +  A  +  ++V +G + +  +Y  +     +  +      LL++++ 
Sbjct: 136 GLCFRGE-----IKKALYFHDQLVAQGFQLDQVSYGTLINGLCKTGETKAVARLLRKLEG 190

Query: 226 KGFVPD 231
               PD
Sbjct: 191 HSVKPD 196


>gi|224130702|ref|XP_002328355.1| predicted protein [Populus trichocarpa]
 gi|222838070|gb|EEE76435.1| predicted protein [Populus trichocarpa]
          Length = 608

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 73/139 (52%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L  +G   EA++LF ++  +GH P+V+++  +I      G    A+ VF +M  +G
Sbjct: 164 LINGLCNEGKIKEAVELFNEMVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNG 223

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  TY  +I  L        +++ DA ++L EM+ +G+ PN  TY  +   F    +
Sbjct: 224 CKPDVVTYNTIIDSLCK-----DRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQ 278

Query: 213 VDEARGLLQQMKAKGFVPD 231
           ++EA  L ++M  +  +PD
Sbjct: 279 LNEATRLFKEMVGRDVMPD 297



 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 86/189 (45%), Gaps = 33/189 (17%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F KM   G   + V    + D+L KD L ++A++  +++ D+G  P+V  +  ++  +
Sbjct: 214 DVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGF 273

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA------------------------ 168
              GQ  EA R+F  M+   V P+  T  +L+ GL                         
Sbjct: 274 CILGQLNEATRLFKEMVGRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNI 333

Query: 169 ----AAADGNA--KILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
               A  DG    +++ +A+K    M+ +G  P   +Y  +   F +++++DEA+ LL +
Sbjct: 334 STYNALMDGYCLQRLMNEAKKVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAE 393

Query: 223 MKAKGFVPD 231
           M  K   PD
Sbjct: 394 MYHKALNPD 402



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 78/161 (48%), Gaps = 8/161 (4%)

Query: 71  PRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P+    IF +M + GL  N V    + D   K G   EAL+L   +++K   P++V HT 
Sbjct: 419 PKEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKLEPNIVHHTI 478

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           +IE    AG+ + A  +F ++ A G+ P   TY V+IKGL         +  +A     +
Sbjct: 479 LIEGMFIAGKLEVAKELFSKLFADGIRPTIRTYTVMIKGLLKEG-----LSDEAYDLFRK 533

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
           M   G  PN+ +Y  + + F++ Q    A  L+ +M  K F
Sbjct: 534 MEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEMVGKRF 574



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 80/169 (47%), Gaps = 9/169 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F++M   G   N +    + + L K G T  A+ +F +++  G  PDVV +  +I++ 
Sbjct: 179 ELFNEMVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSL 238

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
                  +A+     ML  G+ PN +TY  ++ G           L +A +   EMVG+ 
Sbjct: 239 CKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQ-----LNEATRLFKEMVGRD 293

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           + P+  T T + +   +   V EAR + + M  KG  P+  +   AL+D
Sbjct: 294 VMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPN-ISTYNALMD 341



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 72/139 (51%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K+G+  EA  +F  + +KG  P++  + A+++ Y       EA +VF  M+  G
Sbjct: 304 LVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIRQG 363

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            AP  ++Y +LI G        ++ + +A+  L EM  K + P+  TY+ + +   +  +
Sbjct: 364 CAPGVHSYNILINGFCK-----SRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGR 418

Query: 213 VDEARGLLQQMKAKGFVPD 231
             EA  + ++M + G +P+
Sbjct: 419 PKEALNIFKEMCSYGLLPN 437



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 78/158 (49%), Gaps = 6/158 (3%)

Query: 74  LQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           L E++HK         +  M   L + G   EAL +F ++   G +P++V ++ +++ + 
Sbjct: 391 LAEMYHKALNPDTVTYSTLM-QGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDGFC 449

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G   EAL++   M    + PN   + +LI+G+  A       L  A++   ++   G+
Sbjct: 450 KHGHLDEALKLLKSMQEKKLEPNIVHHTILIEGMFIAGK-----LEVAKELFSKLFADGI 504

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           RP   TYT + +  ++    DEA  L ++M+  GF+P+
Sbjct: 505 RPTIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPN 542



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 74/164 (45%), Gaps = 13/164 (7%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +   K     EA  L A++  K   PD V ++ +++     G+ KEAL +F  M + G
Sbjct: 374 LINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGRPKEALNIFKEMCSYG 433

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN  TY++L+ G           L +A K L  M  K + PN   +T + E    A K
Sbjct: 434 LLPNLVTYSILLDGFCKHGH-----LDEALKLLKSMQEKKLEPNIVHHTILIEGMFIAGK 488

Query: 213 VDEARGLLQQMKAKGFVPDEKA--------VKEALIDKRGQGFR 248
           ++ A+ L  ++ A G  P  +         +KE L D+    FR
Sbjct: 489 LEVAKELFSKLFADGIRPTIRTYTVMIKGLLKEGLSDEAYDLFR 532



 Score = 45.4 bits (106), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 23/93 (24%), Positives = 47/93 (50%), Gaps = 3/93 (3%)

Query: 75  QEIFHKMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+F K+  +G+         M   L K+GL+ EA  LF +++D G +P+  ++  +I+ 
Sbjct: 493 KELFSKLFADGIRPTIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQG 552

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +        A+R+   M+    + N  T+ +L+
Sbjct: 553 FLQNQDSSTAIRLIDEMVGKRFSANLSTFQMLL 585



 Score = 41.2 bits (95), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 51/129 (39%), Gaps = 9/129 (6%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +AL  F ++      P V      + ++A   Q    + +  +M   GV  N Y+  VLI
Sbjct: 71  DALASFYRMVRMNPRPSVAEFGKFLGSFAKKKQYSTVVSLCNQMDLFGVTHNVYSLNVLI 130

Query: 165 KGLA--AAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
             L      D    ILG       +M   G+ P A T+ A+        K+ EA  L  +
Sbjct: 131 NCLCRLNHVDFAVSILG-------KMFKLGIHPTASTFNALINGLCNEGKIKEAVELFNE 183

Query: 223 MKAKGFVPD 231
           M  +G  P+
Sbjct: 184 MVRRGHEPN 192


>gi|125562731|gb|EAZ08111.1| hypothetical protein OsI_30376 [Oryza sativa Indica Group]
          Length = 794

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/137 (35%), Positives = 73/137 (53%), Gaps = 5/137 (3%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
           A S  G   +A+Q F+++ +    P    +  +++A   +G    AL ++ RM+A+G AP
Sbjct: 146 AHSSAGRHADAVQAFSRMDEFQSRPTAFVYNTILKALVDSGVILLALALYNRMVAAGCAP 205

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           N  TY VL+ GL         + GDA K   EM+ +G+ PN   YT +  +   A K+DE
Sbjct: 206 NRATYNVLMDGLCKQG-----MAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDE 260

Query: 216 ARGLLQQMKAKGFVPDE 232
           A  LL  MK KG +PDE
Sbjct: 261 AVQLLGSMKDKGCLPDE 277



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 85/196 (43%), Gaps = 33/196 (16%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           ++++M   G   N      + D L K G+  +AL++F ++ D+G MP+V  +T ++ +  
Sbjct: 194 LYNRMVAAGCAPNRATYNVLMDGLCKQGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLC 253

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTY----------------------------AVLIK 165
           +AG+  EA+++   M   G  P+  TY                            A+ +K
Sbjct: 254 NAGKIDEAVQLLGSMKDKGCLPDEVTYNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLK 313

Query: 166 GLAAAADG--NAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           G +   DG   A+   +   Y   M+ + + P+   YT +      A ++++A   L  M
Sbjct: 314 GYSCLIDGLFQARRFDEGFGYYKTMLERNISPDVVLYTIMIRGCAEAGRIEDALSFLDVM 373

Query: 224 KAKGFVPDEKAVKEAL 239
           K KGFVPD       L
Sbjct: 374 KKKGFVPDTFCYNTVL 389



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 81/170 (47%), Gaps = 17/170 (10%)

Query: 79  HKMRTEGLTNNAVK-------MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           H +R+E L NN V        M   L K GL  EA+Q+F ++ + G  P V+ + A+I+ 
Sbjct: 402 HTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIFDEMGEHGCDPTVMTYNALIDG 461

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGD---------AQ 182
           +   G+ +EA  +F +M   G  P+ +    L       ++   K++ D         A 
Sbjct: 462 FYREGRLEEARMLFHKM-EMGNNPSLFLRLTLGANQVRDSESLRKLVHDMCQSGQVLKAY 520

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           K L  ++  G+ P+  TY  +     +A+ +D A  L ++++ KG  PDE
Sbjct: 521 KLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDE 570



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 73/176 (41%), Gaps = 22/176 (12%)

Query: 77  IFHKMRTEG-------LTNNAVKMFDALSKDGLTHEALQ---------LFAQIKDKGHMP 120
           +FHKM           LT  A ++ D+ S   L H+  Q         L   I D G +P
Sbjct: 474 LFHKMEMGNNPSLFLRLTLGANQVRDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVP 533

Query: 121 DVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGD 180
           DVV +  +I     A     A+R+F  +   G++P+  TY  LI GL  A   N     D
Sbjct: 534 DVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDEITYGTLIDGLLRAHREN-----D 588

Query: 181 AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGL-LQQMKAKGFVPDEKAV 235
           A      ++  G  P+   Y ++  +  R +K+ +A  L L  +  K   P E  V
Sbjct: 589 AMMLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINLWLDYLPKKYNFPVESEV 644



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/226 (23%), Positives = 79/226 (34%), Gaps = 67/226 (29%)

Query: 84  EGLTNNAVKMFD-------------------ALSKDGLTHEALQLFAQIKDKGHMPDVVA 124
           +G+  +A+KMFD                   +L   G   EA+QL   +KDKG +PD V 
Sbjct: 220 QGMAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVT 279

Query: 125 HTAVIEAYASAGQGKEAL-RVFM----------------------------------RML 149
           + A +      G+  EA  R+ M                                   ML
Sbjct: 280 YNAFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYYKTML 339

Query: 150 ASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
              ++P+   Y ++I+G A A       + DA  +L  M  KG  P+   Y  V +    
Sbjct: 340 ERNISPDVVLYTIMIRGCAEAGR-----IEDALSFLDVMKKKGFVPDTFCYNTVLKVLCD 394

Query: 210 AQKVDEARGLLQQMKAKGFVPDEKA--------VKEALIDKRGQGF 247
              ++ A  L  +M     V D            K  L+D+  Q F
Sbjct: 395 HGDLERAHTLRSEMLQNNLVLDSTTQTIMICGLCKRGLVDEAMQIF 440


>gi|356561387|ref|XP_003548963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 520

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 79/180 (43%), Gaps = 33/180 (18%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L KD L  EA  L++++  +G  PDV+ +T +I  +  AGQ  EA  +   M+   
Sbjct: 156 IIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQLMEAFGLLNEMILKN 215

Query: 153 VAPNAYTYAVLIKGLAAAA----------------------------DGNAKILGDAQK- 183
           + PN YTY  LI  L                                DG   ++G+ QK 
Sbjct: 216 INPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGYC-LVGEVQKA 274

Query: 184 --YLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
               + MV  G+ P+  +Y  +     + ++VDEA  LL++M  K  +PD      +LID
Sbjct: 275 KQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNMIPDT-VTYSSLID 333



 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 74/135 (54%), Gaps = 5/135 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K+G   E+  L A +  KG  PDVV ++ +++ Y   G+ ++A ++F+ M+ +G
Sbjct: 226 LIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTG 285

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V P+ Y+Y ++I GL        K + +A   L EM+ K M P+  TY+++ +   +  +
Sbjct: 286 VNPDVYSYNIIINGLC-----KGKRVDEAMNLLREMLHKNMIPDTVTYSSLIDGLCKLGR 340

Query: 213 VDEARGLLQQMKAKG 227
           +     L ++M  +G
Sbjct: 341 ITTILDLTKEMHHRG 355



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 75/158 (47%), Gaps = 9/158 (5%)

Query: 78  FH-KMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           FH K+  +G   + V    + + L K G T  A++L   I+D+   PDVV ++ +I+   
Sbjct: 102 FHDKVVAQGFQMDQVSYGILLNGLCKIGETRCAIKLLRTIEDRSTRPDVVMYSTIIDGLC 161

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
                 EA  ++  M A G+ P+  TY  LI G   A       L +A   L EM+ K +
Sbjct: 162 KDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQ-----LMEAFGLLNEMILKNI 216

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            PN  TY  + +   +  KV E++ LL  M  KG  PD
Sbjct: 217 NPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPD 254



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 69/138 (50%), Gaps = 5/138 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K+    +A+ LF ++K++G  P+   +TA+I+     G+ K+   +F  +L  G
Sbjct: 366 LLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGGRLKKGQALFQHLLVKG 425

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
              + +TY V+I GL         +  +A     +M   G  PNA T+  +  + +   +
Sbjct: 426 YCIDVWTYTVMISGLCKEG-----MFDEALAMKSKMEDNGCIPNAVTFEIIIRSLLEKDE 480

Query: 213 VDEARGLLQQMKAKGFVP 230
            D+A  LL +M AKG +P
Sbjct: 481 NDKAEKLLHEMIAKGLLP 498



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 8/159 (5%)

Query: 74  LQEIFHK-MRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           L+E+ HK M  + +T ++  + D L K G     L L  ++  +G   ++V + ++++  
Sbjct: 313 LREMLHKNMIPDTVTYSS--LIDGLCKLGRITTILDLTKEMHHRGQPANLVTYNSLLDGL 370

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
                  +A+ +FM+M   G+ PN YTY  LI GL          L   Q     ++ KG
Sbjct: 371 CKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGGR-----LKKGQALFQHLLVKG 425

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              +  TYT +     +    DEA  +  +M+  G +P+
Sbjct: 426 YCIDVWTYTVMISGLCKEGMFDEALAMKSKMEDNGCIPN 464



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K     EA+ L  ++  K  +PD V ++++I+     G+    L +   M   G
Sbjct: 296 IINGLCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLIDGLCKLGRITTILDLTKEMHHRG 355

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
              N  TY  L+ GL    +     L  A    M+M  +G++PN  TYTA+ +   +  +
Sbjct: 356 QPANLVTYNSLLDGLCKNQN-----LDKAIALFMKMKERGIQPNKYTYTALIDGLCKGGR 410

Query: 213 VDEARGLLQQMKAKGFVPD 231
           + + + L Q +  KG+  D
Sbjct: 411 LKKGQALFQHLLVKGYCID 429



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 63/156 (40%), Gaps = 30/156 (19%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
            + L  Q++ KG +PD+V  + +I  +   GQ   +  V  ++L  G  PN      L+K
Sbjct: 29  VISLSKQMEAKGIVPDLVTLSILINCFCHLGQMAFSFSVLGKILKLGYQPNTIILNTLMK 88

Query: 166 GLAAAADGNAKI-LGD---AQKYLMEMVGKGM--------------------------RP 195
           GL    +    +   D   AQ + M+ V  G+                          RP
Sbjct: 89  GLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGILLNGLCKIGETRCAIKLLRTIEDRSTRP 148

Query: 196 NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +   Y+ + +   + + VDEA  L  +M A+G  PD
Sbjct: 149 DVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPD 184


>gi|255555533|ref|XP_002518803.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542184|gb|EEF43728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 775

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/152 (32%), Positives = 78/152 (51%), Gaps = 8/152 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +FH+M+  GLT + V    + D   K GL  E+  LF ++KD G  PDV+ + A+I  
Sbjct: 272 KSLFHQMKQMGLTPDIVTYNSLIDGYGKLGLLDESFCLFEEMKDVGCEPDVITYNALINC 331

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +    Q  +A      M  SG+ PN  TY+ LI  L         +L  A K+L++M   
Sbjct: 332 FCKYEQMPKAFHFLHEMKNSGLKPNVVTYSTLIDALC-----KEHMLQQAIKFLLDMRRV 386

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           G+ PN  TYT++ +A  +A  + +A  L  +M
Sbjct: 387 GLSPNEFTYTSLIDANCKAGYLSDALKLADEM 418



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/157 (29%), Positives = 79/157 (50%), Gaps = 8/157 (5%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
            H+M+  GL  N V    + DAL K+ +  +A++    ++  G  P+   +T++I+A   
Sbjct: 345 LHEMKNSGLKPNVVTYSTLIDALCKEHMLQQAIKFLLDMRRVGLSPNEFTYTSLIDANCK 404

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
           AG   +AL++   ML   V  N  TY  L+ GL          + +A+     M+  G+ 
Sbjct: 405 AGYLSDALKLADEMLQVQVGFNVVTYTTLLDGLCKEGR-----MMEAEDLFRAMIKAGVT 459

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           PN  TYTA+    ++ ++V+ A  LL+++K K   PD
Sbjct: 460 PNLKTYTALVHGHIKNKRVENALELLKEIKEKKIKPD 496



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 5/140 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M   + K+G    A  LF Q+K  G  PD+V + ++I+ Y   G   E+  +F  M   G
Sbjct: 258 MIGYMCKEGDMVTAKSLFHQMKQMGLTPDIVTYNSLIDGYGKLGLLDESFCLFEEMKDVG 317

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  TY  LI             +  A  +L EM   G++PN  TY+ + +A  +   
Sbjct: 318 CEPDVITYNALINCFCKYEQ-----MPKAFHFLHEMKNSGLKPNVVTYSTLIDALCKEHM 372

Query: 213 VDEARGLLQQMKAKGFVPDE 232
           + +A   L  M+  G  P+E
Sbjct: 373 LQQAIKFLLDMRRVGLSPNE 392



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 52/181 (28%), Positives = 88/181 (48%), Gaps = 17/181 (9%)

Query: 61  KKVVDEEPTDPRNLQEIFHKMRTEGLTNNAVK----MFDALSKDGLTHEALQLFAQIKDK 116
           KK + EE  D       F +M    L  N V     + D L K+     A +LF +++DK
Sbjct: 579 KKGLVEEAID------YFARMADFNLQPNNVAVCTALIDGLCKNNYIEAAKKLFDEMQDK 632

Query: 117 GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK 176
             +PD +A+TA+I+        +EAL +  RM   G+  + + Y  L+ GL   + GN  
Sbjct: 633 NMVPDKIAYTALIDGNLKHKDFQEALNIRSRMSELGMELDLHAYTSLVWGL---SQGN-- 687

Query: 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK 236
           ++  A+ +L EM+GKG+ P+      +   +     +DEA  L  ++  K  VP ++ ++
Sbjct: 688 LVQQARMFLNEMIGKGIVPDEILCIRLLRKYYELGSIDEAIELHDELLKK--VPLDELLE 745

Query: 237 E 237
           E
Sbjct: 746 E 746



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 66/139 (47%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +F    + G+  EA Q F+++      P   +  A +   A  G+G  + + F  M+ +G
Sbjct: 188 LFSVFIELGMLEEAGQCFSRMTRFRVFPKARSCNAFLYRLAKTGKGDLSNKFFRDMVGAG 247

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +A + +TY ++I  +    D     +  A+    +M   G+ P+  TY ++ + + +   
Sbjct: 248 IAQSVFTYNIMIGYMCKEGD-----MVTAKSLFHQMKQMGLTPDIVTYNSLIDGYGKLGL 302

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +DE+  L ++MK  G  PD
Sbjct: 303 LDESFCLFEEMKDVGCEPD 321



 Score = 50.4 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 45/162 (27%), Positives = 68/162 (41%), Gaps = 9/162 (5%)

Query: 77  IFHKMRTEGLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +M+  G+  N+V      DA  K G T EAL L  ++ D G    +V    +I+   
Sbjct: 519 VMSEMKACGIRANSVIYTIRMDAYFKTGKTVEALNLLQEMCDLGVEVTIVTFCVLIDGLC 578

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTY-AVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             G  +EA+  F RM    + PN       LI GL          +  A+K   EM  K 
Sbjct: 579 KKGLVEEAIDYFARMADFNLQPNNVAVCTALIDGLC-----KNNYIEAAKKLFDEMQDKN 633

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
           M P+   YTA+ +  ++ +   EA  +  +M   G   D  A
Sbjct: 634 MVPDKIAYTALIDGNLKHKDFQEALNIRSRMSELGMELDLHA 675



 Score = 50.4 bits (119), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 61/131 (46%), Gaps = 5/131 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K+G   EA  LF  +   G  P++  +TA++  +    + + AL +   +    
Sbjct: 433 LLDGLCKEGRMMEAEDLFRAMIKAGVTPNLKTYTALVHGHIKNKRVENALELLKEIKEKK 492

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+   Y  +I GL +        L + +  + EM   G+R N+  YT   +A+ +  K
Sbjct: 493 IKPDLLLYGTIIWGLCSQNK-----LEECEFVMSEMKACGIRANSVIYTIRMDAYFKTGK 547

Query: 213 VDEARGLLQQM 223
             EA  LLQ+M
Sbjct: 548 TVEALNLLQEM 558


>gi|449454008|ref|XP_004144748.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Cucumis sativus]
 gi|449490811|ref|XP_004158714.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Cucumis sativus]
          Length = 621

 Score = 84.7 bits (208), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 74/136 (54%), Gaps = 6/136 (4%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA +++ Q+ D+   PD+VAH  ++E      +  +A+++F  M A G +P+  +Y +L+
Sbjct: 330 EAGKIWNQMIDEDFKPDIVAHNTMLEGLLRCKKRSDAIKLFEVMKAKGPSPDVKSYTILV 389

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           +     A      + +A +Y  EM G G RP+A  YT +   F   +++D   GLL++MK
Sbjct: 390 RDFCKQAK-----MKEAVQYFEEMQGAGCRPDAAIYTCLITGFGNQKRMDTVYGLLKEMK 444

Query: 225 AKGFVPDEKAVKEALI 240
           A G  PD K    ALI
Sbjct: 445 ANGCPPDGKTY-NALI 459



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 77/165 (46%), Gaps = 11/165 (6%)

Query: 72  RNLQE---IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAH 125
           RNL E   I+++M  E    + V    M + L +     +A++LF  +K KG  PDV ++
Sbjct: 326 RNLMEAGKIWNQMIDEDFKPDIVAHNTMLEGLLRCKKRSDAIKLFEVMKAKGPSPDVKSY 385

Query: 126 TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185
           T ++  +    + KEA++ F  M  +G  P+A  Y  LI G      GN K +      L
Sbjct: 386 TILVRDFCKQAKMKEAVQYFEEMQGAGCRPDAAIYTCLITGF-----GNQKRMDTVYGLL 440

Query: 186 MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
            EM   G  P+  TY A+ +     +  D+A  + ++M   G  P
Sbjct: 441 KEMKANGCPPDGKTYNALIKLMTNKRMPDDAVRIYKKMIENGIKP 485



 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 6/108 (5%)

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
            ++++   A  GKEAL +F + L     PN  TY VL+ G     +     L +A K   
Sbjct: 283 CLLDSLGRAKLGKEALTIFEK-LHGRFTPNLQTYTVLLNGWCRVRN-----LMEAGKIWN 336

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
           +M+ +  +P+   +  + E  +R +K  +A  L + MKAKG  PD K+
Sbjct: 337 QMIDEDFKPDIVAHNTMLEGLLRCKKRSDAIKLFEVMKAKGPSPDVKS 384



 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 66/149 (44%), Gaps = 30/149 (20%)

Query: 109 LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK--- 165
           L  ++K  G  PD   + A+I+   +     +A+R++ +M+ +G+ P  +TY++++K   
Sbjct: 439 LLKEMKANGCPPDGKTYNALIKLMTNKRMPDDAVRIYKKMIENGIKPTTHTYSMMMKSYF 498

Query: 166 -------GLAA---------AADGNAKIL-----------GDAQKYLMEMVGKGMRPNAG 198
                  G+AA           D N+  +            +A KYL EM+ KGM+    
Sbjct: 499 QTRNYEMGVAAWDEMKLKGCCPDDNSYTVFIGGLISLGRCAEAGKYLEEMIEKGMKAPQL 558

Query: 199 TYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
            Y      F RA + D    L Q+MK  G
Sbjct: 559 DYNKFAADFSRAGRPDILEELAQKMKFSG 587


>gi|297835244|ref|XP_002885504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331344|gb|EFH61763.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 618

 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 91/178 (51%), Gaps = 12/178 (6%)

Query: 60  FKKVVDEEPTDPRNLQE---IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQI 113
           +  V+D    D  NL +   +F++M  +G+  + V    +   L  DG   +  ++  ++
Sbjct: 247 YSIVIDSLCKDG-NLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLREM 305

Query: 114 KDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADG 173
             +  +P+VV  +A+I+ +   G+  EA  ++  M+A G+AP+  TY+ LI G       
Sbjct: 306 IGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGFCKENR- 364

Query: 174 NAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
               LG+A + L  MV KG  PN  TY+ +  ++ +A++VD    L  ++ +KG V D
Sbjct: 365 ----LGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVAD 418



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 72/138 (52%), Gaps = 5/138 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   K+G   EA +L+ ++  +G  PD + ++++I+ +    +  EA ++   M++ G
Sbjct: 320 LIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGFCKENRLGEANQMLDLMVSKG 379

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN  TY++LI          AK + +  +   E+  KG+  +  TY  + + F ++ K
Sbjct: 380 CEPNIVTYSILINSYC-----KAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGK 434

Query: 213 VDEARGLLQQMKAKGFVP 230
           ++ A+ L Q+M ++G  P
Sbjct: 435 LNVAKELFQEMVSRGVPP 452



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 70/160 (43%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            ++   M ++G   N V    + ++  K       ++LF +I  KG + D V +  +++ 
Sbjct: 369 NQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQG 428

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +  +G+   A  +F  M++ GV P+  TY +L+ GL    +     L  A +   +M   
Sbjct: 429 FCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNGE-----LQKALEIFEKMQKS 483

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            M    G Y  +      A KVD+A  L   +  KG  PD
Sbjct: 484 RMILGIGIYNIIIHGMCNASKVDDAWSLFCSLSVKGVKPD 523



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 78/169 (46%), Gaps = 8/169 (4%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+F +M + G+  + V    + D L  +G   +AL++F +++    +  +  +  +I  
Sbjct: 439 KELFQEMVSRGVPPSVVTYGILLDGLCDNGELQKALEIFEKMQKSRMILGIGIYNIIIHG 498

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
             +A +  +A  +F  +   GV P+  TY V+I GL          L +A     +M   
Sbjct: 499 MCNASKVDDAWSLFCSLSVKGVKPDVLTYNVMIGGLCKKGS-----LSEADMLFRKMKED 553

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
           G  P+  TY  +  A +    V  +  L+++MK +GF  D   +K  ++
Sbjct: 554 GCAPSDCTYNILIRAHLGGSGVISSVELIEEMKMRGFAADASTIKMVVV 602



 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 75/163 (46%), Gaps = 8/163 (4%)

Query: 73  NLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           N   +F ++ ++GL  + V    +     + G  + A +LF ++  +G  P VV +  ++
Sbjct: 402 NGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILL 461

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
           +     G+ ++AL +F +M  S +      Y ++I G+      NA  + DA      + 
Sbjct: 462 DGLCDNGELQKALEIFEKMQKSRMILGIGIYNIIIHGMC-----NASKVDDAWSLFCSLS 516

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
            KG++P+  TY  +     +   + EA  L ++MK  G  P +
Sbjct: 517 VKGVKPDVLTYNVMIGGLCKKGSLSEADMLFRKMKEDGCAPSD 559



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/139 (22%), Positives = 63/139 (45%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +    +G   EA+ L  ++ +  + P+VV    +I      G+  EAL +  RM+  G
Sbjct: 145 LINGFCLEGRVSEAVALVDRMVEMKYRPNVVTVNTLINGLCLKGRVTEALVLIDRMVKYG 204

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
              N  TY  ++  +  +  GN  +  D  + + E   + ++ +   Y+ V ++  +   
Sbjct: 205 CEANEITYGPVLNRMCKS--GNTALALDLFRKMEE---RSIKASVVQYSIVIDSLCKDGN 259

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +D+A  L  +M+ KG   D
Sbjct: 260 LDDALSLFNEMEMKGIKAD 278


>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 1032

 Score = 84.7 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 50/194 (25%), Positives = 95/194 (48%), Gaps = 32/194 (16%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D     +++ +M   G+  N V    + + L K G   +A +LF +I++K  +PDVV ++
Sbjct: 676 DIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYS 735

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKG----------LAAAADGNAK 176
            +I+ Y  +G   EA ++F  M++ G++P+ Y Y +LI G          L+   +   K
Sbjct: 736 TIIDGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQK 795

Query: 177 ILG-------------------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
            +G                   +A++   +MV K + PN  TYT + +A+ +A+ ++EA 
Sbjct: 796 SVGSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAE 855

Query: 218 GLLQQMKAKGFVPD 231
            L   M+ +  +P+
Sbjct: 856 QLFLDMETRNIIPN 869



 Score = 84.0 bits (206), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 50/161 (31%), Positives = 82/161 (50%), Gaps = 10/161 (6%)

Query: 75  QEIFHKMRTEGLTNNAVKMFDALSKD----GLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           +  F  M + G+  N V ++  L K     G T EAL  F  + +KG +PD+ A++A+I 
Sbjct: 576 ERYFKDMLSSGIVPNNV-IYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIH 634

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
           + +  G+ KEA+ VF++ L +GV P+ + Y  LI G     D     +  A +   EM+ 
Sbjct: 635 SLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGD-----IEKASQLYDEMLH 689

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            G+ PN   Y  +     +  +V +AR L  +++ K  VPD
Sbjct: 690 NGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPD 730



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 45/158 (28%), Positives = 78/158 (49%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           IF  M + GL  N      + D   K+G   EAL++  ++  +G   +VV + A+I   A
Sbjct: 333 IFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIA 392

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG+  +A+ +F  ML +G+ P+ +TY +LI G   + D     +  A + L EM  + +
Sbjct: 393 KAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHD-----MAKACELLAEMKARKL 447

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            P+  TY+ +      +  + +A  +L QM   G  P+
Sbjct: 448 TPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPN 485



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 46/158 (29%), Positives = 78/158 (49%), Gaps = 7/158 (4%)

Query: 74  LQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           L E+  + +    T NA      L + G   EAL++   + +KG  PD   +T +++ + 
Sbjct: 265 LSEMEKECKPNLFTYNA--FIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFC 322

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
              + KEA  +F  M +SG+ PN +TY  LI G     +GN +   +A +   EM+ +G+
Sbjct: 323 KQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGF--IKEGNIE---EALRIKDEMITRGL 377

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + N  TY A+     +A ++ +A  L  +M   G  PD
Sbjct: 378 KLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPD 415



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/127 (32%), Positives = 62/127 (48%), Gaps = 5/127 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA  L   + +KG  P+   + A I  Y+ +G+ + A R F  ML+SG+ PN   Y +LI
Sbjct: 539 EAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILI 598

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           KG      GN     +A      M+ KG+ P+   Y+A+  +  +  K  EA G+  +  
Sbjct: 599 KGHCDV--GNTV---EALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFL 653

Query: 225 AKGFVPD 231
             G VPD
Sbjct: 654 KTGVVPD 660



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 81/161 (50%), Gaps = 12/161 (7%)

Query: 76  EIFHKMRTEGLTNNAVKMFDALSKDGLTH-----EALQLFAQIKDKGHMPDVVAHTAVIE 130
           E+  +M+   LT +       +S  GL H     +A ++  Q+   G  P+V  +  +I+
Sbjct: 437 ELLAEMKARKLTPSPFTYSVLIS--GLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIK 494

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
           AY    + + A+ +   M+A+GV P+ + Y  LI GL       AK + +A+  L++M  
Sbjct: 495 AYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLC-----RAKKVEEAKMLLVDMGE 549

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           KG++PNA TY A    + ++ ++  A    + M + G VP+
Sbjct: 550 KGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPN 590



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/158 (25%), Positives = 71/158 (44%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F++M   GL  +      + D   K     +A +L A++K +   P    ++ +I    
Sbjct: 403 LFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLC 462

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            +   ++A  V  +M+ +GV PN + Y  LIK     +     I     + L  M+  G+
Sbjct: 463 HSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAI-----ELLKIMIANGV 517

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            P+   Y  +     RA+KV+EA+ LL  M  KG  P+
Sbjct: 518 LPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPN 555



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 74/169 (43%), Gaps = 8/169 (4%)

Query: 69  TDPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAH 125
           +D +   E+  +M   G+  N      +  A  ++     A++L   +   G +PD+  +
Sbjct: 465 SDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCY 524

Query: 126 TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185
             +I     A + +EA  + + M   G+ PNA+TY   I   + + +     +  A++Y 
Sbjct: 525 NCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGE-----IQVAERYF 579

Query: 186 MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
            +M+  G+ PN   YT + +         EA    + M  KG +PD +A
Sbjct: 580 KDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRA 628



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 47/167 (28%), Positives = 83/167 (49%), Gaps = 10/167 (5%)

Query: 77  IFHKMRTEGLTNNAV--KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           +FH+ + + + + +    + D+  K G   EA +LF  + DK   P++V +T +I+AY  
Sbjct: 788 LFHEAQQKSVGSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGK 847

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNA-KILGDAQKYLMEMVGKGM 193
           A   +EA ++F+ M    + PN  TY  L+  L+    GN  K++        +M  +G+
Sbjct: 848 AEMMEEAEQLFLDMETRNIIPNTLTYTSLL--LSYNQIGNRFKMI----SLFKDMEARGI 901

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
             +A  Y  +  A+ +  K  EA  LL +   +G +  E  V +ALI
Sbjct: 902 ACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEG-IKLEDDVFDALI 947



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 71/176 (40%), Gaps = 24/176 (13%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVKMF-------------------DALSKDGLTHEALQLF 110
           D R    I H +   G T  A+ +F                       K+G   +A QL+
Sbjct: 625 DIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLY 684

Query: 111 AQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAA 170
            ++   G  P++V +  +I      G+  +A  +F  +    + P+  TY+ +I G   +
Sbjct: 685 DEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKS 744

Query: 171 ADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK 226
            +     L +A K   EM+ KG+ P+   Y  + +   +   +++A  L  + + K
Sbjct: 745 GN-----LTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQK 795



 Score = 50.4 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 45/202 (22%), Positives = 86/202 (42%), Gaps = 33/202 (16%)

Query: 75   QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            +E+F  M  + LT N V    + DA  K  +  EA QLF  ++ +  +P+ + +T+++ +
Sbjct: 820  RELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLS 879

Query: 132  YASAGQGKEALRVFMRMLASGVAPNAYTYAV---------------------LIKGLAAA 170
            Y   G   + + +F  M A G+A +A  Y V                     L++G+   
Sbjct: 880  YNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIKLE 939

Query: 171  AD---------GNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221
             D            K +    + L EM  + +  ++ T   +   F ++   DEA  +L 
Sbjct: 940  DDVFDALIFHLCKEKQISTVLELLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEASKVLG 999

Query: 222  QMKAKGFVPDEKAVKEALIDKR 243
             M+  G+VP   ++ +++   R
Sbjct: 1000 VMQRLGWVPTSLSLTDSISTGR 1021



 Score = 45.1 bits (105), Expect = 0.029,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 6/131 (4%)

Query: 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
           G  +EA  +F     +G  P ++    ++     A       +V+  M+ + + P+ YTY
Sbjct: 186 GFLNEASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTY 245

Query: 161 AVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
             +IK      D    I G   K ++  + K  +PN  TY A      +   VDEA  + 
Sbjct: 246 TNVIKAHCKVGD---VIKG---KMVLSEMEKECKPNLFTYNAFIGGLCQTGAVDEALEVK 299

Query: 221 QQMKAKGFVPD 231
           + M  KG  PD
Sbjct: 300 KLMMEKGLGPD 310


>gi|410109915|gb|AFV61037.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           brasiliensis]
          Length = 427

 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 113/237 (47%), Gaps = 15/237 (6%)

Query: 2   AATAILRWLLHSPSPKRS-LRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPF 60
           +A+A+   +L +   +RS + + +  + A L+      + +  +  +  + K   P+D  
Sbjct: 49  SASAVFAAILETKGTQRSDIFVFSGLITAYLESEFLRDAIECYR--LTREHKFWVPFDTC 106

Query: 61  KKVVDEEPTDPRNLQEI--FHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIK 114
           +KV+ E     +  + +  F+K   E     ++  F+ L     KDG    A  +F  I 
Sbjct: 107 RKVL-EHLMKLKYFKLVWGFYKXILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAIT 165

Query: 115 DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174
             G  P VV++  ++  Y   G   E  R+   MLASGV P+ YTY+VLI GL   +   
Sbjct: 166 KWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESK-- 223

Query: 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              + DA +   EM+ KG+ PN  T+T + +   +  +VD A  + ++M ++  +PD
Sbjct: 224 ---MDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPD 277



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 85/201 (42%), Gaps = 35/201 (17%)

Query: 63  VVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM 119
           +  E   D  N  E+F +M  +GL  N V    + D   K+G    A++++ ++  +  +
Sbjct: 218 LCKESKMDDAN--ELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLL 275

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN----- 174
           PD++ +  +I      G  K+A  +   M   G+ P+  TY  LI G     D +     
Sbjct: 276 PDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEH 335

Query: 175 -----------------AKILG--------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
                            A I G        DA+K L EM+  G++PN  TYT +   F +
Sbjct: 336 RKRMIQENIXLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPNXRTYTMIINEFCK 395

Query: 210 AQKVDEARGLLQQMKAKGFVP 230
              V +   LL++M+  G VP
Sbjct: 396 KGDVWKGSKLLKEMQRDGHVP 416



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 76/158 (48%), Gaps = 6/158 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K+    +A +LF ++  KG +P+ V  T +I+ +   G+   A+ ++ RML+  
Sbjct: 214 LINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQS 273

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+  TY  LI GL    D     L  A   + EM  KG++P+  TYT + +   +   
Sbjct: 274 LLPDLITYNTLIYGLCKKGD-----LKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKEGD 328

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGV 250
           +D A    ++M  +    D+ A   ALI    Q  R V
Sbjct: 329 LDTAFEHRKRMIQENIXLDDVAYT-ALISGLCQEGRSV 365


>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score = 84.7 bits (208), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 78/139 (56%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D++ K  L +EA  LF+++  KG  PDVV ++A+I  +   G+ K+A+ +F +M+   
Sbjct: 231 IIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILEN 290

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+ YT+ +L+   A   DG  K   + +     M+ +G++PN  TY ++ + +   ++
Sbjct: 291 IKPDVYTFNILVN--AFCKDGKMK---EGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKE 345

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V++A+ +   M   G  PD
Sbjct: 346 VNKAKSIFNTMAQGGVNPD 364



 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 80/162 (49%), Gaps = 8/162 (4%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
            +F +M  + +  + V    + D LSK G    ALQL  Q+ D+G  P++  + ++++A 
Sbjct: 386 NLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDAL 445

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               Q  +A+ +  +    G  P+  TY++LIKGL  +       L DA+K   +++ KG
Sbjct: 446 CKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGK-----LEDARKVFEDLLVKG 500

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
              +   YT + + F      +EA  LL +M+  G +PD K 
Sbjct: 501 YNLDVYAYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKT 542



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 68/135 (50%), Gaps = 5/135 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DAL K     +A+ L  + KDKG  PD+  ++ +I+    +G+ ++A +VF  +L  G
Sbjct: 441 ILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLLVKG 500

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
              + Y Y ++I+G          +  +A   L +M   G  P+A TY  +  +  +  +
Sbjct: 501 YNLDVYAYTIMIQGFCVEG-----LFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDE 555

Query: 213 VDEARGLLQQMKAKG 227
            D A  LL++M A+G
Sbjct: 556 NDMAEKLLREMIARG 570



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 78/160 (48%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +F  M  +G+  N V    + D        ++A  +F  +   G  PD+ +++ +I  
Sbjct: 315 KTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMING 374

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +    +  EA+ +F  M    + P+  TY+ LI GL+ +       +  A + + +M  +
Sbjct: 375 FCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGR-----ISYALQLVDQMHDR 429

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G+ PN  TY ++ +A  +  +VD+A  LL + K KGF PD
Sbjct: 430 GVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPD 469



 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 8/156 (5%)

Query: 79  HKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASA 135
            KM   G+  N V    + +   + GL   A  +FA+I   G++PD +  T + +     
Sbjct: 109 QKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLSKGLCLK 168

Query: 136 GQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP 195
           GQ ++A     +++A G   +  +Y  LI GL    +  A     A   L  + G  ++P
Sbjct: 169 GQIQQAFLFHDKVVALGFHFDQISYGTLIHGLCKVGETRA-----ALDLLQRVDGNLVQP 223

Query: 196 NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           N   Y  + ++  + + V+EA  L  +M +KG  PD
Sbjct: 224 NVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPD 259



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 64/139 (46%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L K G T  AL L  ++      P+VV +  +I++        EA  +F  M++ G
Sbjct: 196 LIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKG 255

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           ++P+  TY+ LI G           L DA     +M+ + ++P+  T+  +  AF +  K
Sbjct: 256 ISPDVVTYSALISGFCILGK-----LKDAIDLFNKMILENIKPDVYTFNILVNAFCKDGK 310

Query: 213 VDEARGLLQQMKAKGFVPD 231
           + E + +   M  +G  P+
Sbjct: 311 MKEGKTVFDMMMKQGIKPN 329



 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 71/142 (50%), Gaps = 5/142 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M +   K     EA+ LF ++  K  +PDVV ++++I+  + +G+   AL++  +M   G
Sbjct: 371 MINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRG 430

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V PN  TY  ++  L      +  I       L +   KG +P+  TY+ + +   ++ K
Sbjct: 431 VPPNICTYNSILDALCKTHQVDKAI-----ALLTKFKDKGFQPDISTYSILIKGLCQSGK 485

Query: 213 VDEARGLLQQMKAKGFVPDEKA 234
           +++AR + + +  KG+  D  A
Sbjct: 486 LEDARKVFEDLLVKGYNLDVYA 507



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 5/101 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L + G   +A ++F  +  KG+  DV A+T +I+ +   G   EAL +  +M  +G  P
Sbjct: 479 GLCQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEALALLSKMEDNGCIP 538

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196
           +A TY ++I  L    + +      A+K L EM+ +G+  N
Sbjct: 539 DAKTYEIIILSLFKKDENDM-----AEKLLREMIARGLPLN 574


>gi|302808035|ref|XP_002985712.1| hypothetical protein SELMODRAFT_181879 [Selaginella moellendorffii]
 gi|300146621|gb|EFJ13290.1| hypothetical protein SELMODRAFT_181879 [Selaginella moellendorffii]
          Length = 447

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 72/139 (51%), Gaps = 6/139 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +     K G   +AL+L  ++K  G  P+VV HT +I    +AG+  +AL  F R +   
Sbjct: 36  LMQGFCKAGEFQQALELLDEMKSNGVRPNVVIHTTIIRGLCTAGKVSQALLHF-RRIGED 94

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            APN YTY+ L+  L  +   +     +A   + EMV KG  PN  TY A+ + F + ++
Sbjct: 95  CAPNVYTYSTLVDALCKSGQPH-----EAYGLVTEMVKKGCSPNVVTYNALIDGFRKLER 149

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +DE   LL++M  +G   D
Sbjct: 150 LDEVLMLLKEMSQRGCRAD 168



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++   M ++G   + V    +  A +  G T+++L+L  ++   G++ D      VI  +
Sbjct: 258 QVLLSMYSQGCKTDDVSYKILVVAFANAGRTYDSLELLGRMLGSGYILDTKTMNVVIHKF 317

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             AG   EA ++F  M   G  P+  TY  LI     A   +  +     K L +M+   
Sbjct: 318 CKAGDLHEAHQLFKSMYQRGSIPSNVTYNTLIGAFCKAQQPDTAV-----KLLHQMIQAD 372

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +PN  TY ++ ++F R Q+ +EARG+ Q M   G  PD
Sbjct: 373 FKPNVITYNSIIKSFCREQREEEARGIFQMMVDNGCFPD 411



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 85/185 (45%), Gaps = 12/185 (6%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  KM  EG   N V    +   L K+    EA Q+   +  +G   D V++  ++ A+A
Sbjct: 224 LLEKMIQEGTRPNQVNYRTVLLMLCKNSRLDEAYQVLLSMYSQGCKTDDVSYKILVVAFA 283

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
           +AG+  ++L +  RML SG   +  T  V+I     A D     L +A +    M  +G 
Sbjct: 284 NAGRTYDSLELLGRMLGSGYILDTKTMNVVIHKFCKAGD-----LHEAHQLFKSMYQRGS 338

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD----EKAVKEALIDKRGQGFRG 249
            P+  TY  +  AF +AQ+ D A  LL QM    F P+       +K    ++R +  RG
Sbjct: 339 IPSNVTYNTLIGAFCKAQQPDTAVKLLHQMIQADFKPNVITYNSIIKSFCREQREEEARG 398

Query: 250 VINIL 254
           +  ++
Sbjct: 399 IFQMM 403



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 64/126 (50%), Gaps = 11/126 (8%)

Query: 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQ 182
           V++  +++ +  AG+ ++AL +   M ++GV PN   +  +I+GL  A   +  +L    
Sbjct: 31  VSYGILMQGFCKAGEFQQALELLDEMKSNGVRPNVVIHTTIIRGLCTAGKVSQALLH--- 87

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDK 242
                 +G+   PN  TY+ + +A  ++ +  EA GL+ +M  KG  P+      ALID 
Sbjct: 88  ---FRRIGEDCAPNVYTYSTLVDALCKSGQPHEAYGLVTEMVKKGCSPN-VVTYNALID- 142

Query: 243 RGQGFR 248
              GFR
Sbjct: 143 ---GFR 145



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 71/172 (41%), Gaps = 28/172 (16%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DAL K G  HEA  L  ++  KG  P+VV + A+I+ +    +  E L +   M   G
Sbjct: 105 LVDALCKSGQPHEAYGLVTEMVKKGCSPNVVTYNALIDGFRKLERLDEVLMLLKEMSQRG 164

Query: 153 VAPNAYTYAVLIKGLAA--AADGNAKIL----------------------GD----AQKY 184
              +  TY +++       + D   ++L                      GD    A   
Sbjct: 165 CRADVITYTMILDIFCKNNSIDEAYRLLNALEKRNVVTYNSLFTALSTAEGDRTTEALSL 224

Query: 185 LMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK 236
           L +M+ +G RPN   Y  V     +  ++DEA  +L  M ++G   D+ + K
Sbjct: 225 LEKMIQEGTRPNQVNYRTVLLMLCKNSRLDEAYQVLLSMYSQGCKTDDVSYK 276


>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
 gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
          Length = 599

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 107/224 (47%), Gaps = 18/224 (8%)

Query: 14  PSPKRSLRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKKVVDEEPTDPRN 73
           PSP       N  ++A+ +R +   +    KK +       P    +  V+D      R 
Sbjct: 78  PSPV----TYNVMIDASCKRGMLEEACDLIKKMIEDGH--VPDVVTYNTVMDGLCKSSR- 130

Query: 74  LQE---IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           ++E   +F++M   G T N      +   L +     +A Q+F +++ K   PD  ++  
Sbjct: 131 VEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDSWSYGI 190

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           +I+  A AG+  EA ++F RML SG+ P+A TY V+I G+       A  L +A +    
Sbjct: 191 LIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCL-----AYTLDEALELFKS 245

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           M  KG RP+  T+  + +A  +  K+DEA  LL++M   G VPD
Sbjct: 246 MRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPD 289



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 71/162 (43%), Gaps = 5/162 (3%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           D R+L E   K + +        +   L K G   EA ++   +   G  PDVV +  ++
Sbjct: 308 DARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLV 367

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
             +  AGQ + A  +   M+A G+APN  TY  L+ GL       A  L +A     +M 
Sbjct: 368 HGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLC-----KANRLPEACGVFAQMK 422

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             G  PN  TYTA+   F  A +VD    L  +M   G  PD
Sbjct: 423 SSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPD 464



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 97/216 (44%), Gaps = 13/216 (6%)

Query: 24  NTRVNATLQRSLSSSS--DQPTKKYVNTKSKLPPPYDPFKKVVDEEPTDPRNLQE---IF 78
           N R + T+   L   S  DQ  + +   ++K  PP      ++ +       L E   +F
Sbjct: 149 NRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDSWSYGILIDGLAKAGKLNEAYKLF 208

Query: 79  HKMRTEGLTNNAVKMFDALSKDGLTH---EALQLFAQIKDKGHMPDVVAHTAVIEAYASA 135
            +M   G+T +AV     +    L +   EAL+LF  ++ KG  P       +I+A+   
Sbjct: 209 QRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKR 268

Query: 136 GQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP 195
           G+  EA R+  RM   G  P+  TY+ LI GL + A      + DA+  L +MV +  +P
Sbjct: 269 GKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIAR-----VDDARHLLEDMVKRQCKP 323

Query: 196 NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              T   +     +A ++ EAR +L  M + G  PD
Sbjct: 324 TVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPD 359



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 91/212 (42%), Gaps = 47/212 (22%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+F  M   G   + V    M DA  K G+  EA  L  ++ + GH+PDVV +  V++ 
Sbjct: 65  RELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDG 124

Query: 132 YASAGQGKEAL-----------------------------------RVFMRMLASGVAPN 156
              + + +EAL                                   +VF  M A  + P+
Sbjct: 125 LCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPD 184

Query: 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
           +++Y +LI GLA A       L +A K    M+  G+ P+A TY  V      A  +DEA
Sbjct: 185 SWSYGILIDGLAKAGK-----LNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEA 239

Query: 217 RGLLQQMKAKGFVPDEKAVKEALID---KRGQ 245
             L + M++KG  P  +     LID   KRG+
Sbjct: 240 LELFKSMRSKGCRP-SRFTFNILIDAHCKRGK 270



 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 13/163 (7%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L+K G  ++A  LF ++   G  P  VA+T++I     A    +A  +F  M   G
Sbjct: 16  LIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRG 75

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  TY V+I      A     +L +A   + +M+  G  P+  TY  V +   ++ +
Sbjct: 76  CPPSPVTYNVMID-----ASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSR 130

Query: 213 VDEARGLLQQMKAKGFVPDEKA--------VKEALIDKRGQGF 247
           V+EA  L  +M+  G  P+ ++         +++ ID+  Q F
Sbjct: 131 VEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVF 173



 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 5/112 (4%)

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
           PD  ++  +I+  A AG+  +A  +F ++L SGV P+   Y  LI GL  A         
Sbjct: 8   PDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANS-----FD 62

Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           DA++   +M  +G  P+  TY  + +A  +   ++EA  L+++M   G VPD
Sbjct: 63  DARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPD 114



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 84/183 (45%), Gaps = 20/183 (10%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+   M   GL  N V    +   L K     EA  +FAQ+K  G  P++  +TA+I  
Sbjct: 380 RELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILG 439

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           + SAGQ    L++F  M+ +G++P+   Y  L   L  +        G + + L E++ +
Sbjct: 440 FCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKS--------GRSARAL-EILRE 490

Query: 192 G---MRPNAG---TYTAVFEAFVRAQKVDEARGLLQQMKAKGFV--PDEKAVKEALIDKR 243
           G   +R  A     Y    +  + A K++ A G ++ M   G +  P+  A   A + K 
Sbjct: 491 GRESLRSEAWGDEVYRFAVDGLLEAGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKS 550

Query: 244 GQG 246
           GQG
Sbjct: 551 GQG 553


>gi|145336957|ref|NP_176459.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206054|sp|Q9SI78.1|PPR93_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62720
 gi|6630449|gb|AAF19537.1|AC007190_5 F23N19.8 [Arabidopsis thaliana]
 gi|62320514|dbj|BAD95075.1| PPR-repeat protein [Arabidopsis thaliana]
 gi|332195876|gb|AEE33997.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 485

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 83/166 (50%), Gaps = 24/166 (14%)

Query: 85  GLTNNAVKMFDALSKDGLTHEAL---QLFAQIKDKGH----------------MPDVVAH 125
           GL N+AV++FD + +DG+  +A+    L A +   G                 +P+V+  
Sbjct: 188 GLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITF 247

Query: 126 TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185
           TAVI+ +   G+  EA++++  M    V P+ +TY  LI GL          + +A++ L
Sbjct: 248 TAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGR-----VDEAKQML 302

Query: 186 MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             MV KG  P+  TY  +   F ++++VDE   L ++M  +G V D
Sbjct: 303 DLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGD 348



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 71/139 (51%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +   +     +A+ L +++++ G  PDVV +  +I+     G   +A+ +F RM   G
Sbjct: 145 LINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDG 204

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V  +A TY  L+ GL  +   +     DA + + +MV + + PN  T+TAV + FV+  K
Sbjct: 205 VRADAVTYNSLVAGLCCSGRWS-----DAARLMRDMVMRDIVPNVITFTAVIDVFVKEGK 259

Query: 213 VDEARGLLQQMKAKGFVPD 231
             EA  L ++M  +   PD
Sbjct: 260 FSEAMKLYEEMTRRCVDPD 278



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 79/189 (41%), Gaps = 36/189 (19%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +++   M T+G   + V    + +   K     E  +LF ++  +G + D + +  +I+ 
Sbjct: 299 KQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQG 358

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA----------------------- 168
           Y  AG+   A  +F RM +    PN  TY++L+ GL                        
Sbjct: 359 YFQAGRPDAAQEIFSRMDSR---PNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELD 415

Query: 169 -----AAADGNAKI--LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221
                    G  KI  + DA      +  KG++P+  +YT +   F R ++ D++  L +
Sbjct: 416 ITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYR 475

Query: 222 QMKAKGFVP 230
           +M+  G +P
Sbjct: 476 KMQEDGLLP 484



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 8/132 (6%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L   G   EA Q+   +  KG +PDVV +  +I  +  + +  E  ++F  M   G
Sbjct: 285 LINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRG 344

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +  +  TY  +I+G   A   +A     AQ+    M     RPN  TY+ +        +
Sbjct: 345 LVGDTITYNTIIQGYFQAGRPDA-----AQEIFSRM---DSRPNIRTYSILLYGLCMNWR 396

Query: 213 VDEARGLLQQMK 224
           V++A  L + M+
Sbjct: 397 VEKALVLFENMQ 408



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 66/151 (43%), Gaps = 12/151 (7%)

Query: 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
            E + LF ++     +P +V  + V+   A +      + +F  M   G+  + Y+Y ++
Sbjct: 51  EEEIDLFCKMIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIV 110

Query: 164 IKGLAAAADG--NAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221
           I  L   +       ++G   K+       G  P+  T +++   F +  +V +A  L+ 
Sbjct: 111 INCLCRCSRFVIALSVVGKMMKF-------GYEPDVVTVSSLINGFCQGNRVFDAIDLVS 163

Query: 222 QMKAKGFVPDEKAVKEALIDKRGQGFRGVIN 252
           +M+  GF PD   +   +ID  G    G++N
Sbjct: 164 KMEEMGFRPD-VVIYNTIID--GSCKIGLVN 191


>gi|357499971|ref|XP_003620274.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495289|gb|AES76492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 498

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 79/142 (55%), Gaps = 5/142 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D++ K  L +EA  L++++  +G  PDVV ++A+I  +   G+ K+A+ +F +M+   
Sbjct: 184 IIDSMCKVKLVNEAFDLYSEMVSEGISPDVVTYSALISGFFIVGKLKDAIDLFNKMILEN 243

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+ YT+ +L+ G     DG  K   + +     M+ +G++PN  TY ++ + +   ++
Sbjct: 244 IKPDVYTFNILVDGF--CKDGKMK---EGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQ 298

Query: 213 VDEARGLLQQMKAKGFVPDEKA 234
           V++A  +   M   G  PD ++
Sbjct: 299 VNKANSIFNTMAQGGVNPDTQS 320



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 76/159 (47%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F+KM  E +  +      + D   KDG   E   +FA +  +G  P+VV + ++++ Y
Sbjct: 234 DLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGY 293

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               Q  +A  +F  M   GV P+  +Y ++I G         K + +A     +M  K 
Sbjct: 294 CLVKQVNKANSIFNTMAQGGVNPDTQSYNIMINGFCK-----IKKVDEAMNLFKKMHCKN 348

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + PN  TYT++ +   ++ K+  A  L+ +M  +G  PD
Sbjct: 349 IIPNVVTYTSLIDGLCKSGKISYALKLVDEMHDRGVPPD 387



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 77/165 (46%), Gaps = 16/165 (9%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
            +F KM  + +  N V    + D L K G    AL+L  ++ D+G  PD++ ++++++A 
Sbjct: 339 NLFKKMHCKNIIPNVVTYTSLIDGLCKSGKISYALKLVDEMHDRGVPPDIITYSSILDAL 398

Query: 133 ASAGQGKEAL--------RVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKY 184
               Q  +A+        +VF  +   G   + Y Y V+I+G          +  +A   
Sbjct: 399 CKNHQVDKAIALLTKLKDQVFEDLFVKGYNLDVYAYTVMIQGFCVKG-----LFNEALAL 453

Query: 185 LMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFV 229
           L +M   G  P+A TY  +  +  +  + D A  LL++M A+G +
Sbjct: 454 LSKMEDNGRIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGLL 498



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 10/149 (6%)

Query: 92  KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
           K+  +L K    H A+ L  Q++ KG   ++V    +I  ++  GQ   +  VF  +L  
Sbjct: 65  KILGSLVKINCYHTAISLHRQMELKGIASNLVTLNILINCFSQLGQNPLSFSVFANILKK 124

Query: 152 GVAPNAYTYAVLIKGLA------AAADGNAKILGDAQ---KYLMEMVGKGMRPNAGTYTA 202
           G  PN  T   LIKGL          +G  K+ G A+   + L  + GK ++PN   Y  
Sbjct: 125 GYDPNVITLTTLIKGLCLKVSYGTLINGLCKV-GQARAALQLLRRVDGKLVQPNVVMYNT 183

Query: 203 VFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + ++  + + V+EA  L  +M ++G  PD
Sbjct: 184 IIDSMCKVKLVNEAFDLYSEMVSEGISPD 212



 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 66/139 (47%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K G    ALQL  ++  K   P+VV +  +I++        EA  ++  M++ G
Sbjct: 149 LINGLCKVGQARAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSEG 208

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           ++P+  TY+ LI G           L DA     +M+ + ++P+  T+  + + F +  K
Sbjct: 209 ISPDVVTYSALISGFFIVGK-----LKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGK 263

Query: 213 VDEARGLLQQMKAKGFVPD 231
           + E + +   M  +G  P+
Sbjct: 264 MKEGKTVFAMMMKQGIKPN 282



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 6/166 (3%)

Query: 75  QEIFHKMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
             IF+ M   G+   T +   M +   K     EA+ LF ++  K  +P+VV +T++I+ 
Sbjct: 303 NSIFNTMAQGGVNPDTQSYNIMINGFCKIKKVDEAMNLFKKMHCKNIIPNVVTYTSLIDG 362

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA--AADGNAKILGDAQKYLME-M 188
              +G+   AL++   M   GV P+  TY+ ++  L      D    +L   +  + E +
Sbjct: 363 LCKSGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQVFEDL 422

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
             KG   +   YT + + F      +EA  LL +M+  G +PD K 
Sbjct: 423 FVKGYNLDVYAYTVMIQGFCVKGLFNEALALLSKMEDNGRIPDAKT 468


>gi|356561933|ref|XP_003549231.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g62470, mitochondrial-like [Glycine max]
          Length = 510

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 73/127 (57%), Gaps = 5/127 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA +++ ++ D+G  PD+VAH  ++E      +  +A+++F  M A G +PN  +Y ++I
Sbjct: 221 EAGRVWNEMIDRGFNPDIVAHNVMLEGLLKCKKKSDAIKLFEIMKAKGPSPNVRSYTIMI 280

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           +          K++G+A +Y   MV +G +P+A  YT +   F R +K+D    LL++M+
Sbjct: 281 QDFC-----KQKLMGEAIEYFDVMVDRGCQPDAALYTCLITGFGRQKKMDMVYSLLKEMR 335

Query: 225 AKGFVPD 231
            +G  PD
Sbjct: 336 ERGCPPD 342



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 69/162 (42%), Gaps = 8/162 (4%)

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F  M+ +G + N      M     K  L  EA++ F  + D+G  PD   +T +I  +
Sbjct: 259 KLFEIMKAKGPSPNVRSYTIMIQDFCKQKLMGEAIEYFDVMVDRGCQPDAALYTCLITGF 318

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               +      +   M   G  P+  TY  LIK + +       +  DA +   +M+  G
Sbjct: 319 GRQKKMDMVYSLLKEMRERGCPPDGRTYNALIKLMTSQ-----HMPDDAVRIYKKMIQSG 373

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
           ++P   TY  + +++   +  +    +  +M  KG  PD+ +
Sbjct: 374 IKPTIHTYNMIMKSYFVTKNYEMGHEIWDEMHPKGCCPDDNS 415



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 74/165 (44%), Gaps = 11/165 (6%)

Query: 72  RNLQE---IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAH 125
           +NL E   ++++M   G   + V    M + L K     +A++LF  +K KG  P+V ++
Sbjct: 217 KNLLEAGRVWNEMIDRGFNPDIVAHNVMLEGLLKCKKKSDAIKLFEIMKAKGPSPNVRSY 276

Query: 126 TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185
           T +I+ +       EA+  F  M+  G  P+A  Y  LI G      G  K +      L
Sbjct: 277 TIMIQDFCKQKLMGEAIEYFDVMVDRGCQPDAALYTCLITGF-----GRQKKMDMVYSLL 331

Query: 186 MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
            EM  +G  P+  TY A+ +        D+A  + ++M   G  P
Sbjct: 332 KEMRERGCPPDGRTYNALIKLMTSQHMPDDAVRIYKKMIQSGIKP 376



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 5/119 (4%)

Query: 109 LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
           L  +++++G  PD   + A+I+   S     +A+R++ +M+ SG+ P  +TY +++K   
Sbjct: 330 LLKEMRERGCPPDGRTYNALIKLMTSQHMPDDAVRIYKKMIQSGIKPTIHTYNMIMKSYF 389

Query: 169 AAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
              +          +   EM  KG  P+  +Y       +R  +  EA   L++M  KG
Sbjct: 390 VTKNYEM-----GHEIWDEMHPKGCCPDDNSYIVYIGGLIRQDRSGEACKYLEEMLEKG 443



 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 65/141 (46%), Gaps = 6/141 (4%)

Query: 109 LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
           +F  +K  G    V     ++++ ++A  GKEA  VF + L     P+  TY +L+ G  
Sbjct: 156 IFDLMKKYGFKVGVDVINFLLDSLSTAKLGKEAQAVFEK-LKDRFTPSLQTYTILLSGWC 214

Query: 169 AAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
                  K L +A +   EM+ +G  P+   +  + E  ++ +K  +A  L + MKAKG 
Sbjct: 215 -----RLKNLLEAGRVWNEMIDRGFNPDIVAHNVMLEGLLKCKKKSDAIKLFEIMKAKGP 269

Query: 229 VPDEKAVKEALIDKRGQGFRG 249
            P+ ++    + D   Q   G
Sbjct: 270 SPNVRSYTIMIQDFCKQKLMG 290


>gi|410109953|gb|AFV61056.1| pentatricopeptide repeat-containing protein 11, partial [Nashia
           inaguensis]
          Length = 431

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 112/237 (47%), Gaps = 15/237 (6%)

Query: 2   AATAILRWLLHSPSPKRS-LRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPF 60
           +A+A+   +L +   +RS + + +  + A L+      + +  +  +  + KL  P+D  
Sbjct: 53  SASAVFATILETKGTQRSDIYVFSGLITAYLESGFLRDAIECYR--LTREHKLWVPFDTC 110

Query: 61  KKVVDEEPTDPRNLQEI--FHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIK 114
           +KV+ E     R  + +  F++   E     ++  F+ L     KDG    A  +F  I 
Sbjct: 111 RKVL-EHLMKLRYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAIT 169

Query: 115 DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174
             G  P VV++  ++  Y   G   E  R+   MLASGV P+ YTY+VLI GL   +   
Sbjct: 170 KWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESK-- 227

Query: 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              + DA +   EM+ KG+ PN  T+T +     +  +VD A  + + M ++  +PD
Sbjct: 228 ---MDDANELFDEMLVKGLIPNGVTFTTLIXGHCKNGRVDLAMEIYKXMLSQSLLPD 281



 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 86/201 (42%), Gaps = 35/201 (17%)

Query: 63  VVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM 119
           +  E   D  N  E+F +M  +GL  N V    +     K+G    A++++  +  +  +
Sbjct: 222 LCKESKMDDAN--ELFDEMLVKGLIPNGVTFTTLIXGHCKNGRVDLAMEIYKXMLSQSLL 279

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD------- 172
           PD++ +  +I      G  K+A  +   M   G+ P+ +TY  LI G     D       
Sbjct: 280 PDLITYNTLIYGLCKKGDLKQAHXLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFKH 339

Query: 173 ------GN---------AKILG--------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
                 GN         A I G        DA+K L EM+  G++P+ GTYT +   F +
Sbjct: 340 RKRMIQGNIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDIGTYTMIINEFCK 399

Query: 210 AQKVDEARGLLQQMKAKGFVP 230
              V +   LL++M+  G VP
Sbjct: 400 KGDVWKGSKLLKEMQRNGHVP 420


>gi|15221893|ref|NP_173324.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|42571539|ref|NP_973860.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75151479|sp|Q8GYP6.1|PPR49_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18900
 gi|26450017|dbj|BAC42129.1| unknown protein [Arabidopsis thaliana]
 gi|28827402|gb|AAO50545.1| unknown protein [Arabidopsis thaliana]
 gi|332191657|gb|AEE29778.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332191658|gb|AEE29779.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 860

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 84/162 (51%), Gaps = 8/162 (4%)

Query: 74  LQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           + ++  +M  +G   N V   ++  +  +    +EA+ +F Q+++ G  PD V +  +I+
Sbjct: 383 INKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLID 442

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
            +A AG    A+ ++ RM A G++P+ +TY+V+I  L     G A  L  A K   EMV 
Sbjct: 443 IHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCL-----GKAGHLPAAHKLFCEMVD 497

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           +G  PN  TY  + +   +A+    A  L + M+  GF PD+
Sbjct: 498 QGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDK 539



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 75/159 (47%), Gaps = 8/159 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            ++F +M  +G T N V    M D  +K      AL+L+  +++ G  PD V ++ V+E 
Sbjct: 489 HKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEV 548

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G  +EA  VF  M      P+   Y +L+     A  GN +    A ++   M+  
Sbjct: 549 LGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKA--GNVE---KAWQWYQAMLHA 603

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           G+RPN  T  ++   F+R  K+ EA  LLQ M A G  P
Sbjct: 604 GLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRP 642



 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 6/90 (6%)

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           G   + +TY  ++  L     G AK  G   K L EMV  G +PN  TY  +  ++ RA 
Sbjct: 359 GFKHDGHTYTTMVGNL-----GRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRAN 413

Query: 212 KVDEARGLLQQMKAKGFVPDEKAVKEALID 241
            ++EA  +  QM+  G  PD +     LID
Sbjct: 414 YLNEAMNVFNQMQEAGCKPD-RVTYCTLID 442



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 74/174 (42%), Gaps = 25/174 (14%)

Query: 53  LPPPYDPFKKVVDEEPT--------------DPRNLQ---EIFHKMRTEGLTNNAVK--- 92
           LP  +  F ++VD+  T                RN Q   +++  M+  G   + V    
Sbjct: 485 LPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSI 544

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L   G   EA  +F +++ K  +PD   +  +++ +  AG  ++A + +  ML +G
Sbjct: 545 VMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAG 604

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEA 206
           + PN  T   L+             + +A + L  M+  G+RP+  TYT +   
Sbjct: 605 LRPNVPTCNSLLSTFL-----RVNKIAEAYELLQNMLALGLRPSLQTYTLLLSC 653



 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 54/127 (42%), Gaps = 6/127 (4%)

Query: 106 ALQLFAQIKDK-GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           AL  F  +K + G   D   +T ++     A Q     ++   M+  G  PN  TY  LI
Sbjct: 347 ALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLI 406

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
                   G A  L +A     +M   G +P+  TY  + +   +A  +D A  + Q+M+
Sbjct: 407 HSY-----GRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQ 461

Query: 225 AKGFVPD 231
           A G  PD
Sbjct: 462 AGGLSPD 468



 Score = 38.5 bits (88), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 3/85 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   K G   +A Q +  +   G  P+V    +++  +    +  EA  +   MLA G
Sbjct: 580 LVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALG 639

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKI 177
           + P+  TY +L   L+   DG +K+
Sbjct: 640 LRPSLQTYTLL---LSCCTDGRSKL 661


>gi|334182677|ref|NP_001185030.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332191659|gb|AEE29780.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 886

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 84/162 (51%), Gaps = 8/162 (4%)

Query: 74  LQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           + ++  +M  +G   N V   ++  +  +    +EA+ +F Q+++ G  PD V +  +I+
Sbjct: 383 INKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLID 442

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
            +A AG    A+ ++ RM A G++P+ +TY+V+I  L     G A  L  A K   EMV 
Sbjct: 443 IHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCL-----GKAGHLPAAHKLFCEMVD 497

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           +G  PN  TY  + +   +A+    A  L + M+  GF PD+
Sbjct: 498 QGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDK 539



 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 75/159 (47%), Gaps = 8/159 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            ++F +M  +G T N V    M D  +K      AL+L+  +++ G  PD V ++ V+E 
Sbjct: 489 HKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEV 548

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G  +EA  VF  M      P+   Y +L+     A  GN +    A ++   M+  
Sbjct: 549 LGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKA--GNVE---KAWQWYQAMLHA 603

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           G+RPN  T  ++   F+R  K+ EA  LLQ M A G  P
Sbjct: 604 GLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRP 642



 Score = 50.4 bits (119), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 6/90 (6%)

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           G   + +TY  ++  L     G AK  G   K L EMV  G +PN  TY  +  ++ RA 
Sbjct: 359 GFKHDGHTYTTMVGNL-----GRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRAN 413

Query: 212 KVDEARGLLQQMKAKGFVPDEKAVKEALID 241
            ++EA  +  QM+  G  PD +     LID
Sbjct: 414 YLNEAMNVFNQMQEAGCKPD-RVTYCTLID 442



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 63/138 (45%), Gaps = 8/138 (5%)

Query: 72  RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           +N  +++  M+  G   + V    + + L   G   EA  +F +++ K  +PD   +  +
Sbjct: 521 QNALKLYRDMQNAGFEPDKVTYSIVMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLL 580

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           ++ +  AG  ++A + +  ML +G+ PN  T   L+             + +A + L  M
Sbjct: 581 VDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFL-----RVNKIAEAYELLQNM 635

Query: 189 VGKGMRPNAGTYTAVFEA 206
           +  G+RP+  TYT +   
Sbjct: 636 LALGLRPSLQTYTLLLSC 653



 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 54/127 (42%), Gaps = 6/127 (4%)

Query: 106 ALQLFAQIKDK-GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           AL  F  +K + G   D   +T ++     A Q     ++   M+  G  PN  TY  LI
Sbjct: 347 ALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLI 406

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
                   G A  L +A     +M   G +P+  TY  + +   +A  +D A  + Q+M+
Sbjct: 407 HSY-----GRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQ 461

Query: 225 AKGFVPD 231
           A G  PD
Sbjct: 462 AGGLSPD 468



 Score = 38.5 bits (88), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 3/85 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   K G   +A Q +  +   G  P+V    +++  +    +  EA  +   MLA G
Sbjct: 580 LVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALG 639

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKI 177
           + P+  TY +L   L+   DG +K+
Sbjct: 640 LRPSLQTYTLL---LSCCTDGRSKL 661


>gi|410109925|gb|AFV61042.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           hermannioides]
          Length = 417

 Score = 84.3 bits (207), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 114/237 (48%), Gaps = 15/237 (6%)

Query: 2   AATAILRWLLHSPSPKRS-LRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPF 60
           +A+A+   +L +   +RS + + +  + A L+      + +  +  +  + KL  P+D  
Sbjct: 39  SASAVFATILETKGTQRSDIYVFSGLITAYLESGFXRDAIECYR--LTREHKLWVPFDTC 96

Query: 61  KKVVDEEPTDPRNLQEI--FHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIK 114
           +KV+ E     +  + +  F++   E     ++  F+ L     KDG    A  +F  I 
Sbjct: 97  RKVL-EHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAIT 155

Query: 115 DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174
             G  P VV++  ++  Y   G   E  R+   MLASGV P+ YTY+VLI GL   +   
Sbjct: 156 KWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESK-- 213

Query: 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              + DA +   EM+ KG+ PN  T+T + +   +  +VD A  + ++M ++  +PD
Sbjct: 214 ---MDDANELFDEMLVKGLIPNGVTFTTLIDGRCKNGRVDLAMEIYKRMLSQSLLPD 267



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 85/201 (42%), Gaps = 35/201 (17%)

Query: 63  VVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM 119
           +  E   D  N  E+F +M  +GL  N V    + D   K+G    A++++ ++  +  +
Sbjct: 208 LCKESKMDDAN--ELFDEMLVKGLIPNGVTFTTLIDGRCKNGRVDLAMEIYKRMLSQSLL 265

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN----- 174
           PD++ +  +I      G  K+A  +   M   G+ P+ +TY  LI G     D +     
Sbjct: 266 PDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEH 325

Query: 175 -----------------AKILG--------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
                            A I G        DA+K L EM+   ++P+ GTYT +   F +
Sbjct: 326 RKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVDLKPDTGTYTMIINEFCK 385

Query: 210 AQKVDEARGLLQQMKAKGFVP 230
              V +   LL++M+  G  P
Sbjct: 386 KGDVWKGSKLLKEMQRDGHAP 406



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 75/158 (47%), Gaps = 6/158 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K+    +A +LF ++  KG +P+ V  T +I+     G+   A+ ++ RML+  
Sbjct: 204 LINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGRCKNGRVDLAMEIYKRMLSQS 263

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+  TY  LI GL    D     L  A   + EM  KG++P+  TYT + +   +   
Sbjct: 264 LLPDLITYNTLIYGLCKKGD-----LKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGD 318

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGV 250
           +D A    ++M  +    D+ A   ALI    Q  R V
Sbjct: 319 LDTAFEHRKRMIQENIRLDDVAYT-ALISGLCQEGRSV 355


>gi|297844848|ref|XP_002890305.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336147|gb|EFH66564.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 860

 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 84/162 (51%), Gaps = 8/162 (4%)

Query: 74  LQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           + ++  +M  +G   N V   ++  +  +    +EA+ +F Q+++ G  PD V +  +I+
Sbjct: 383 INKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLID 442

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
            +A AG    A+ ++ RM A G++P+ +TY+V+I  L     G A  L  A K   EMV 
Sbjct: 443 IHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCL-----GKAGHLPAAHKLFCEMVD 497

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           +G  PN  TY  + +   +A+    A  L + M+  GF PD+
Sbjct: 498 QGCTPNLVTYNIMMDLHAKARNYQSALKLYRDMQNAGFEPDK 539



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 74/159 (46%), Gaps = 8/159 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            ++F +M  +G T N V    M D  +K      AL+L+  +++ G  PD V ++ V+E 
Sbjct: 489 HKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQSALKLYRDMQNAGFEPDKVTYSIVMEV 548

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G  +EA  VF  M      P+   Y +L+     A  GN +    A ++   M+  
Sbjct: 549 LGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKA--GNVE---KAWQWYQAMLHA 603

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           G+ PN  T  ++   F+R  K+ EA  LLQ M A G  P
Sbjct: 604 GLLPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRP 642



 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 6/90 (6%)

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           G   + +TY  ++  L     G AK  G   K L EMV  G +PN  TY  +  ++ RA 
Sbjct: 359 GFKHDGHTYTTMVGNL-----GRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRAN 413

Query: 212 KVDEARGLLQQMKAKGFVPDEKAVKEALID 241
            ++EA  +  QM+  G  PD +     LID
Sbjct: 414 YLNEAMNVFNQMQEAGCKPD-RVTYCTLID 442



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 74/174 (42%), Gaps = 25/174 (14%)

Query: 53  LPPPYDPFKKVVDEEPT--------------DPRNLQ---EIFHKMRTEGLTNNAVK--- 92
           LP  +  F ++VD+  T                RN Q   +++  M+  G   + V    
Sbjct: 485 LPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQSALKLYRDMQNAGFEPDKVTYSI 544

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L   G   EA  +F +++ K  +PD   +  +++ +  AG  ++A + +  ML +G
Sbjct: 545 VMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAG 604

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEA 206
           + PN  T   L+             + +A + L  M+  G+RP+  TYT +   
Sbjct: 605 LLPNVPTCNSLLSTFL-----RVNKIAEAYELLQNMLALGLRPSLQTYTLLLSC 653



 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 54/127 (42%), Gaps = 6/127 (4%)

Query: 106 ALQLFAQIKDK-GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           AL  F  +K + G   D   +T ++     A Q     ++   M+  G  PN  TY  LI
Sbjct: 347 ALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLI 406

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
                   G A  L +A     +M   G +P+  TY  + +   +A  +D A  + Q+M+
Sbjct: 407 HSY-----GRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQ 461

Query: 225 AKGFVPD 231
           A G  PD
Sbjct: 462 AGGLSPD 468



 Score = 40.4 bits (93), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 3/85 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   K G   +A Q +  +   G +P+V    +++  +    +  EA  +   MLA G
Sbjct: 580 LVDLWGKAGNVEKAWQWYQAMLHAGLLPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALG 639

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKI 177
           + P+  TY +L   L+   DG +K+
Sbjct: 640 LRPSLQTYTLL---LSCCTDGRSKL 661


>gi|410109941|gb|AFV61050.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rhodocnemis]
          Length = 428

 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 114/237 (48%), Gaps = 15/237 (6%)

Query: 2   AATAILRWLLHSPSPKRS-LRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPF 60
           +A+A+   +L +   +RS + + +  + A L+      + +  +  +  + KL  P+D  
Sbjct: 50  SASAVFAAILETKGTQRSDIYVFSGLITAYLETGFLRDAIECYR--LTREHKLWVPFDTC 107

Query: 61  KKVVDEEPTDPRNLQEI--FHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIK 114
           +KV+ E     +  + +  F++   E     ++  F+ L     KDG    A  +F  I 
Sbjct: 108 RKVL-EHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAIT 166

Query: 115 DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174
             G  P VV++  ++  Y   G   E  R+   MLASGV P+ YTY+VLI GL   +   
Sbjct: 167 KWGLRPSVVSYNTLMNGYIRLGHLDEGFRLKSAMLASGVLPDVYTYSVLINGLCKESK-- 224

Query: 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              + DA +   EM+ KG+ PN  T+T + +   +  +VD A  + ++M ++  +PD
Sbjct: 225 ---MDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDFAMEIYKRMLSQSLLPD 278



 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 86/201 (42%), Gaps = 35/201 (17%)

Query: 63  VVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM 119
           +  E   D  N  E+F +M  +GL  N V    + D   K+G    A++++ ++  +  +
Sbjct: 219 LCKESKMDDAN--ELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDFAMEIYKRMLSQSLL 276

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN----- 174
           PD++ +  +I      G  K+A  +   M   G+ P+ +TY  LI G     D +     
Sbjct: 277 PDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEH 336

Query: 175 -----------------AKILG--------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
                            A I G        DA+K L EM+  G++P+ GTYT +   F +
Sbjct: 337 RKRMIQENIRLDDVAYAALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCK 396

Query: 210 AQKVDEARGLLQQMKAKGFVP 230
              V +   LL++M+  G  P
Sbjct: 397 KGDVWKGSKLLKEMQRNGHAP 417



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 76/158 (48%), Gaps = 6/158 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K+    +A +LF ++  KG +P+ V  T +I+ +   G+   A+ ++ RML+  
Sbjct: 215 LINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDFAMEIYKRMLSQS 274

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+  TY  LI GL    D     L  A   + EM  KG++P+  TYT + +   +   
Sbjct: 275 LLPDLITYNTLIYGLCKKGD-----LKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGD 329

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGV 250
           +D A    ++M  +    D+ A   ALI    Q  R V
Sbjct: 330 LDTAFEHRKRMIQENIRLDDVAYA-ALISGLCQEGRSV 366


>gi|410109937|gb|AFV61048.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           pusilla]
          Length = 431

 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 114/237 (48%), Gaps = 15/237 (6%)

Query: 2   AATAILRWLLHSPSPKRS-LRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPF 60
           +A+A+   +L +   +RS + + +  + A L+      + +  +  +  + KL  P+D  
Sbjct: 53  SASAVFAAILETKGTQRSDIYVFSGLITAYLESGFLRDAIECYR--LTREHKLWVPFDTC 110

Query: 61  KKVVDEEPTDPRNLQEI--FHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIK 114
           +KV+ E     +  + +  F++   E     ++  F+ L     KDG    A  +F  I 
Sbjct: 111 RKVL-EHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAIT 169

Query: 115 DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174
             G  P VV++  ++  Y   G   E  R+   MLASGV P+ YTY+VLI GL   +   
Sbjct: 170 KWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDXYTYSVLINGLCKESK-- 227

Query: 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              + DA +   EM+ KG+ PN  T+T + +   +  +VD A  + ++M ++  +PD
Sbjct: 228 ---MDDANELFDEMLVKGLVPNGVTFTTLIDGHCKKGRVDLAMEIYKRMLSQSLLPD 281



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 86/201 (42%), Gaps = 35/201 (17%)

Query: 63  VVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM 119
           +  E   D  N  E+F +M  +GL  N V    + D   K G    A++++ ++  +  +
Sbjct: 222 LCKESKMDDAN--ELFDEMLVKGLVPNGVTFTTLIDGHCKKGRVDLAMEIYKRMLSQSLL 279

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN----- 174
           PD++ +  +I      G  K+A  +   M+  G+ P+  TY  LI G     D +     
Sbjct: 280 PDLITYNTLIYGLCKKGDLKQANDLIDEMVMKGLKPDKITYTTLIDGCCKEGDLDTAFEH 339

Query: 175 -----------------AKILG--------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
                            A I G        DA+K L EM+  G++P+ GTYT +   F +
Sbjct: 340 RKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCK 399

Query: 210 AQKVDEARGLLQQMKAKGFVP 230
              V +   LL++M+  G VP
Sbjct: 400 KGDVWKGSRLLKEMQRNGHVP 420



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 77/158 (48%), Gaps = 6/158 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K+    +A +LF ++  KG +P+ V  T +I+ +   G+   A+ ++ RML+  
Sbjct: 218 LINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKKGRVDLAMEIYKRMLSQS 277

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+  TY  LI GL    D     L  A   + EMV KG++P+  TYT + +   +   
Sbjct: 278 LLPDLITYNTLIYGLCKKGD-----LKQANDLIDEMVMKGLKPDKITYTTLIDGCCKEGD 332

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGV 250
           +D A    ++M  +    D+ A   ALI    Q  R V
Sbjct: 333 LDTAFEHRKRMIQENIRLDDVAYT-ALISGLCQEGRSV 369


>gi|255556314|ref|XP_002519191.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541506|gb|EEF43055.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 719

 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 82/160 (51%), Gaps = 14/160 (8%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F +M+ +G+  N V    + D   K G   ++  L   + + G  PD+   +++I+    
Sbjct: 485 FKEMQYKGIPPNLVTFNTLIDGYCKGGEICKSRDLLVMLLEHGFKPDIFTFSSIIDGLCR 544

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGD---AQKYLMEMVGK 191
           A Q ++AL  F  M+  G++PNA TY +LI  L         I+GD   + K L +M   
Sbjct: 545 AKQIEDALGCFSEMVMWGLSPNAVTYNILIHSLC--------IIGDVPRSMKLLRKMQTD 596

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G+ P+  ++ A+ ++F R  KV++A+ L   M + G +PD
Sbjct: 597 GINPDVFSFNALIQSFCRMGKVEDAKKLFSSMLSLGLIPD 636



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 68/136 (50%), Gaps = 5/136 (3%)

Query: 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
           GL     ++F QI   G  P    + AVI+A   +     A   F +M A    P+ +TY
Sbjct: 196 GLAKYCDEIFGQISFLGISPSTRLYNAVIDALVKSNSLDLAYLKFQQMSADNCKPDRFTY 255

Query: 161 AVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
            +LI G+  +      ++ +A + + +M G G  PN  TYT + + F  A+KVDEA  +L
Sbjct: 256 NILIHGVCRSG-----VVDEALRLVKQMEGLGYSPNVFTYTILIDGFFNAKKVDEAFRVL 310

Query: 221 QQMKAKGFVPDEKAVK 236
           + MKA+   P E  ++
Sbjct: 311 ETMKARKVSPSEATIR 326



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 81/164 (49%), Gaps = 8/164 (4%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
            F +M   GL+ NAV    +  +L   G    +++L  +++  G  PDV +  A+I+++ 
Sbjct: 554 CFSEMVMWGLSPNAVTYNILIHSLCIIGDVPRSMKLLRKMQTDGINPDVFSFNALIQSFC 613

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G+ ++A ++F  ML+ G+ P+ YTY   IK    +   N     +A++  + M   G 
Sbjct: 614 RMGKVEDAKKLFSSMLSLGLIPDNYTYVAFIKVFCQSGRFN-----EAKELFLSMEANGC 668

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKE 237
            P++ T   + +A V+  + + A+ + +     G + +  A+ E
Sbjct: 669 MPDSFTCNIILDALVKQDQFEAAQKIAKTCSEWGILVNFAAISE 712



 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 46/221 (20%), Positives = 82/221 (37%), Gaps = 18/221 (8%)

Query: 26  RVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKKVVDEEPTDPRNLQEIFHKMRTEG 85
           RV  T++    S S+   + +++   +   P   F+  ++    +P     +  ++  + 
Sbjct: 308 RVLETMKARKVSPSEATIRSFIHGVFRCVAPNKAFELAIEFIEREP-----VLQRLACDT 362

Query: 86  LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVF 145
           L          LS   +  EA  L  +    GH PD       +          E   + 
Sbjct: 363 L-------LCCLSSKNMAREAGALLKKFGKIGHKPDSATFNIAMNCLIKGFDLNEVCNIL 415

Query: 146 MRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFE 205
            R +  G+     TY  LIK L  A       + +   Y  +MV  G+  N  +Y  V +
Sbjct: 416 DRFVEQGMKFGFSTYLALIKALYMAGK-----VTEGNHYFNQMVKDGLLCNVCSYNMVID 470

Query: 206 AFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
            F +   +D+A    ++M+ KG +P        LID   +G
Sbjct: 471 CFCKTSMMDKATNTFKEMQYKG-IPPNLVTFNTLIDGYCKG 510



 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 60/140 (42%), Gaps = 12/140 (8%)

Query: 76  EIFHKMRTEGLT-----NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           EIF ++   G++      NAV   DAL K      A   F Q+      PD   +  +I 
Sbjct: 203 EIFGQISFLGISPSTRLYNAV--IDALVKSNSLDLAYLKFQQMSADNCKPDRFTYNILIH 260

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
               +G   EALR+  +M   G +PN +TY +LI G       NAK + +A + L  M  
Sbjct: 261 GVCRSGVVDEALRLVKQMEGLGYSPNVFTYTILIDGFF-----NAKKVDEAFRVLETMKA 315

Query: 191 KGMRPNAGTYTAVFEAFVRA 210
           + + P+  T  +      R 
Sbjct: 316 RKVSPSEATIRSFIHGVFRC 335



 Score = 50.1 bits (118), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 63/144 (43%), Gaps = 12/144 (8%)

Query: 88  NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMR 147
           N  +K FD        +E   +  +  ++G       + A+I+A   AG+  E    F +
Sbjct: 400 NCLIKGFD-------LNEVCNILDRFVEQGMKFGFSTYLALIKALYMAGKVTEGNHYFNQ 452

Query: 148 MLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAF 207
           M+  G+  N  +Y ++I      +     ++  A     EM  KG+ PN  T+  + + +
Sbjct: 453 MVKDGLLCNVCSYNMVIDCFCKTS-----MMDKATNTFKEMQYKGIPPNLVTFNTLIDGY 507

Query: 208 VRAQKVDEARGLLQQMKAKGFVPD 231
            +  ++ ++R LL  +   GF PD
Sbjct: 508 CKGGEICKSRDLLVMLLEHGFKPD 531


>gi|326490085|dbj|BAJ94116.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 641

 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 70/139 (50%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   ++GL    ++L  Q+ + G +PDV+ +T VI  +   G   EA+ +   M A G
Sbjct: 359 LVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACG 418

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN  +Y +++KGL       A+   DAQ+ +  M+ +G  PN  T+  +     +   
Sbjct: 419 CKPNTISYTIVLKGLC-----RAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGL 473

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V++A  LL+QM   G  PD
Sbjct: 474 VEQAIELLKQMLVNGCSPD 492



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 80/180 (44%), Gaps = 11/180 (6%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           QE+   M  +G   N V    + + + K GL  +A++L  Q+   G  PD+++++ VI+ 
Sbjct: 443 QELISHMIQQGCLPNPVTFNTLINFMCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDG 502

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              AG+ +EAL +   M+  G+ PN   Y+ +   L+     +  I     +    +   
Sbjct: 503 LGKAGKTEEALELLNVMINKGITPNTIIYSSMASALSREGRTDKII-----QMFDSIQDA 557

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVI 251
            +R +A  Y AV  +  +  + D A      M + G +P+E       I  RG    G++
Sbjct: 558 TVRSDAALYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYT---ILIRGLASEGLV 614



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 62/119 (52%), Gaps = 8/119 (6%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+ + M  +G+T N +    M  ALS++G T + +Q+F  I+D     D   + AVI + 
Sbjct: 514 ELLNVMINKGITPNTIIYSSMASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVISSL 573

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               +   A+  F  M+++G  PN  TY +LI+GLA+       ++ +AQ  L E+  +
Sbjct: 574 CKRWETDRAIDFFAYMVSNGCMPNESTYTILIRGLASEG-----LVREAQDLLSELCSR 627



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 80/193 (41%), Gaps = 35/193 (18%)

Query: 73  NLQEIFHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           +++E+  +M   G   N V  F+ L     ++GL  +  +  +Q+ + G  PD+  +  +
Sbjct: 231 DVEELMVEMVRVGCPPN-VATFNTLIAYLCRNGLFEQVHEALSQMPEHGCTPDLRMYATI 289

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA----------------- 171
           I+     G  + A  +  RM + G+ PN   Y  ++KGL +A                  
Sbjct: 290 IDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDC 349

Query: 172 ---DGNAKILGD----------AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218
              D    IL D            + L +M+  G  P+  TYT V   F +   VDEA  
Sbjct: 350 PLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVM 409

Query: 219 LLQQMKAKGFVPD 231
           LL+ M A G  P+
Sbjct: 410 LLKNMSACGCKPN 422



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 70/185 (37%), Gaps = 37/185 (20%)

Query: 72  RNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           R LQ + H       + N   +  A+ + G   E ++L  ++   G  PD+V++ AV++ 
Sbjct: 164 RALQ-VLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKG 222

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA----------------------- 168
              A +  +   + + M+  G  PN  T+  LI  L                        
Sbjct: 223 LCMAKRWDDVEELMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEALSQMPEHGCTPD 282

Query: 169 ----------AAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218
                        DG+ ++   A   L  M   G++PN   Y  V +    A++ +EA  
Sbjct: 283 LRMYATIIDGICKDGHHEV---ANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAED 339

Query: 219 LLQQM 223
           LL +M
Sbjct: 340 LLAEM 344



 Score = 41.6 bits (96), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 49/115 (42%), Gaps = 8/115 (6%)

Query: 117 GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK 176
           G    VVA+ A+I  Y  AGQ   A R+   +    V PNAYTY  +++ L A       
Sbjct: 71  GDAAGVVAYNAMIAGYCRAGQVAAARRLAAAV---PVPPNAYTYFPIVRSLCARG----- 122

Query: 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           ++ DA   L EM  +G          + EA  R      A   LQ + AKG   D
Sbjct: 123 LIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGFRSAVRALQVLHAKGCTLD 177


>gi|8778269|gb|AAF79278.1|AC068602_1 F14D16.2 [Arabidopsis thaliana]
          Length = 977

 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 84/162 (51%), Gaps = 8/162 (4%)

Query: 74  LQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           + ++  +M  +G   N V   ++  +  +    +EA+ +F Q+++ G  PD V +  +I+
Sbjct: 500 INKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLID 559

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
            +A AG    A+ ++ RM A G++P+ +TY+V+I  L     G A  L  A K   EMV 
Sbjct: 560 IHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCL-----GKAGHLPAAHKLFCEMVD 614

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           +G  PN  TY  + +   +A+    A  L + M+  GF PD+
Sbjct: 615 QGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDK 656



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 75/159 (47%), Gaps = 8/159 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            ++F +M  +G T N V    M D  +K      AL+L+  +++ G  PD V ++ V+E 
Sbjct: 606 HKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEV 665

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G  +EA  VF  M      P+   Y +L+     A  GN +    A ++   M+  
Sbjct: 666 LGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKA--GNVE---KAWQWYQAMLHA 720

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           G+RPN  T  ++   F+R  K+ EA  LLQ M A G  P
Sbjct: 721 GLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRP 759



 Score = 50.4 bits (119), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 6/90 (6%)

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           G   + +TY  ++  L     G AK  G   K L EMV  G +PN  TY  +  ++ RA 
Sbjct: 476 GFKHDGHTYTTMVGNL-----GRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRAN 530

Query: 212 KVDEARGLLQQMKAKGFVPDEKAVKEALID 241
            ++EA  +  QM+  G  PD +     LID
Sbjct: 531 YLNEAMNVFNQMQEAGCKPD-RVTYCTLID 559



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 74/174 (42%), Gaps = 25/174 (14%)

Query: 53  LPPPYDPFKKVVDEEPT--------------DPRNLQ---EIFHKMRTEGLTNNAVK--- 92
           LP  +  F ++VD+  T                RN Q   +++  M+  G   + V    
Sbjct: 602 LPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSI 661

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L   G   EA  +F +++ K  +PD   +  +++ +  AG  ++A + +  ML +G
Sbjct: 662 VMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAG 721

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEA 206
           + PN  T   L+             + +A + L  M+  G+RP+  TYT +   
Sbjct: 722 LRPNVPTCNSLLSTFL-----RVNKIAEAYELLQNMLALGLRPSLQTYTLLLSC 770



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 54/127 (42%), Gaps = 6/127 (4%)

Query: 106 ALQLFAQIKDK-GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           AL  F  +K + G   D   +T ++     A Q     ++   M+  G  PN  TY  LI
Sbjct: 464 ALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLI 523

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
                   G A  L +A     +M   G +P+  TY  + +   +A  +D A  + Q+M+
Sbjct: 524 HSY-----GRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQ 578

Query: 225 AKGFVPD 231
           A G  PD
Sbjct: 579 AGGLSPD 585



 Score = 38.9 bits (89), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 3/85 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   K G   +A Q +  +   G  P+V    +++  +    +  EA  +   MLA G
Sbjct: 697 LVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALG 756

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKI 177
           + P+  TY +L   L+   DG +K+
Sbjct: 757 LRPSLQTYTLL---LSCCTDGRSKL 778


>gi|297839351|ref|XP_002887557.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333398|gb|EFH63816.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 845

 Score = 84.3 bits (207), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 85/162 (52%), Gaps = 8/162 (4%)

Query: 74  LQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           +  +  +M  +G   N V   ++  +  +    +EA+ +F Q+++ G  PD V +  +I+
Sbjct: 368 INRLLDEMVKDGCKPNTVTYNRLIHSYGRANYLNEAMNVFKQMQEAGCEPDRVTYCTLID 427

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
            +A AG    A+ ++ RM A+G++P+ +TY+V+I  L     G A  L  A +   EMVG
Sbjct: 428 IHAKAGFLDIAMDMYQRMQAAGLSPDTFTYSVIINCL-----GKAGHLPAAHRLFCEMVG 482

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           +G  PN  T+  +     +A+  + A  L + M+  GF PD+
Sbjct: 483 QGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDK 524



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 76/159 (47%), Gaps = 8/159 (5%)

Query: 75  QEIFHKMRTEGLTNNAV--KMFDALSKDGLTHE-ALQLFAQIKDKGHMPDVVAHTAVIEA 131
             +F +M  +G T N V   +  AL      +E AL+L+  +++ G  PD V ++ V+E 
Sbjct: 474 HRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEV 533

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G  +EA  VF  M      P+   Y +L+     A  GN +    A ++  EM+  
Sbjct: 534 LGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKA--GNVE---KAWQWYQEMLHA 588

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           G+RPN  T  ++   F+R  ++ EA  LLQ M A G  P
Sbjct: 589 GLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHP 627



 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 6/90 (6%)

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           G   + +TY  ++  L     G AK  G   + L EMV  G +PN  TY  +  ++ RA 
Sbjct: 344 GFKHDGHTYTTMVGNL-----GRAKQFGAINRLLDEMVKDGCKPNTVTYNRLIHSYGRAN 398

Query: 212 KVDEARGLLQQMKAKGFVPDEKAVKEALID 241
            ++EA  + +QM+  G  PD +     LID
Sbjct: 399 YLNEAMNVFKQMQEAGCEPD-RVTYCTLID 427



 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 53/127 (41%), Gaps = 6/127 (4%)

Query: 106 ALQLFAQIKDK-GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           AL  F  +K + G   D   +T ++     A Q     R+   M+  G  PN  TY  LI
Sbjct: 332 ALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINRLLDEMVKDGCKPNTVTYNRLI 391

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
                   G A  L +A     +M   G  P+  TY  + +   +A  +D A  + Q+M+
Sbjct: 392 HSY-----GRANYLNEAMNVFKQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQ 446

Query: 225 AKGFVPD 231
           A G  PD
Sbjct: 447 AAGLSPD 453


>gi|302788594|ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
 gi|300156342|gb|EFJ22971.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
          Length = 440

 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 87/195 (44%), Gaps = 42/195 (21%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F  +   GL  +A+      D L K G   +AL +   + +KG +PDVV+H AVI   
Sbjct: 204 ELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGL 263

Query: 133 AS-----------------------------------AGQGKEALRVFMRMLASGVAPNA 157
                                                AG+ K+A+  F  ML  GV P  
Sbjct: 264 CKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTV 323

Query: 158 YTYAVLIKGLAAA-ADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
            TY +L+ GL  A  +G  K   +A      M+ KG  P+  TY+A+ +   +A K+D+A
Sbjct: 324 VTYNILVDGLCKARQEGRIK---EAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDA 380

Query: 217 RGLLQQMKAKGFVPD 231
           R LL  M+AKG +P+
Sbjct: 381 RRLLGAMEAKGCIPN 395



 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 79/162 (48%), Gaps = 13/162 (8%)

Query: 77  IFHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +   M  +G + NA+  F+ L     + G   +A+  F ++  +G  P VV +  +++  
Sbjct: 275 LLSGMEAKGCSPNAIS-FNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGL 333

Query: 133 ASA---GQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
             A   G+ KEA+ +F  M+  G  P+  TY+ LI GL     G A  L DA++ L  M 
Sbjct: 334 CKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGL-----GKAGKLDDARRLLGAME 388

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            KG  PN  TY ++       +KVDEA  L   M  KG VPD
Sbjct: 389 AKGCIPNVYTYNSLISGLCGLEKVDEALELFVAMVEKGCVPD 430



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 78/173 (45%), Gaps = 12/173 (6%)

Query: 81  MRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ 137
           MR  G   N +    +   L   G   +A  L+ ++   G+ PDVV +  ++  +   G+
Sbjct: 1   MRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGE 60

Query: 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA 197
             EAL++F   +  G  P+  TY  LI G   A       L +AQ+ L  MV + + P+ 
Sbjct: 61  LDEALKIFDGAVKRGFVPDVVTYNALINGFCKADK-----LDEAQRILQRMVSENLVPDV 115

Query: 198 GTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGV 250
            TY ++     +  +VDEAR L+     KGF P+       LI    +  RGV
Sbjct: 116 VTYNSLVNGLCKNGRVDEARMLIVD---KGFSPN-VITYSTLISGLCRELRGV 164



 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 66/127 (51%), Gaps = 5/127 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EAL+LF  +  +G+ P+V  +  +I+      +  EA  +F  ++  G+ P+A TY V I
Sbjct: 166 EALKLFGSVLKQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFI 225

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            GL  A       + DA   L +M  KG  P+  ++ AV     + ++VDEA  LL  M+
Sbjct: 226 DGLCKAGR-----VEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGME 280

Query: 225 AKGFVPD 231
           AKG  P+
Sbjct: 281 AKGCSPN 287



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 12/161 (7%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           Q ++ +M   G + + V    +     K G   EAL++F     +G +PDVV + A+I  
Sbjct: 30  QALYERMIKAGYSPDVVTYNTLLHGFCKVGELDEALKIFDGAVKRGFVPDVVTYNALING 89

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +  A +  EA R+  RM++  + P+  TY  L+ GL           G   +  M +V K
Sbjct: 90  FCKADKLDEAQRILQRMVSENLVPDVVTYNSLVNGLCKN--------GRVDEARMLIVDK 141

Query: 192 GMRPNAGTYTAVFEAFVRAQK-VDEARGLLQQMKAKGFVPD 231
           G  PN  TY+ +     R  + V EA  L   +  +G+ P+
Sbjct: 142 GFSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQGYEPE 182



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 68/135 (50%), Gaps = 11/135 (8%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSK---DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           F +M   G+    V    + D L K   +G   EA+ LF  + +KG +PDVV ++A+I+ 
Sbjct: 311 FKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDG 370

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              AG+  +A R+   M A G  PN YTY  LI GL     G  K+  +A +  + MV K
Sbjct: 371 LGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLC----GLEKV-DEALELFVAMVEK 425

Query: 192 GMRPNAGTYTAVFEA 206
           G  P+  TY  +  A
Sbjct: 426 GCVPDTITYGTIISA 440



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 5/138 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K+   +EA +LF+ +   G  PD + +T  I+    AG+ ++AL +   M   G
Sbjct: 189 LIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKG 248

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  ++  +I GL        K + +A+  L  M  KG  PNA ++  +     RA K
Sbjct: 249 CVPDVVSHNAVINGLC-----KEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGK 303

Query: 213 VDEARGLLQQMKAKGFVP 230
             +A    ++M  +G  P
Sbjct: 304 WKKAMTTFKEMLKRGVKP 321


>gi|410109931|gb|AFV61045.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           macrophylla]
          Length = 431

 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 112/237 (47%), Gaps = 15/237 (6%)

Query: 2   AATAILRWLLHSPSPKRS-LRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPF 60
           +A+A+   +L +   +RS + + +  + A L+      + +  +  +  + K   P+D  
Sbjct: 53  SASAVFAAILETKGTQRSDIYVFSGLITAYLESGFLRDAIECYR--LTREHKFWVPFDTC 110

Query: 61  KKVVDEEPTDPRNLQEI--FHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIK 114
           +KV+ E     +  + +  F+K   E     ++  F+ L     KDG    A  +F  I 
Sbjct: 111 RKVL-EHLMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAIT 169

Query: 115 DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174
             G  P VV++  ++  Y   G   E  R+   MLASGV P+ YTY+VLI GL   +   
Sbjct: 170 KWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESK-- 227

Query: 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              + DA +   EM+ KG+ PN   +T + +   +  +VD A  + +QM ++  +PD
Sbjct: 228 ---MDDANELFDEMLVKGLVPNGVIFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPD 281



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 85/201 (42%), Gaps = 35/201 (17%)

Query: 63  VVDEEPTDPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHM 119
           +  E   D  N  E+F +M  +GL  N V    + D   K+G    A++++ Q+  +  +
Sbjct: 222 LCKESKMDDAN--ELFDEMLVKGLVPNGVIFTTLIDGHCKNGRVDLAMEIYKQMLSQSLL 279

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN----- 174
           PD++ +  +I      G  K+   +   M   G+ P+  TY  LI G     D +     
Sbjct: 280 PDLITYNTLIYGLCKKGDLKQVHHLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEH 339

Query: 175 -----------------AKILG--------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
                            A I G        DA+K L EM+  G++P+A TYT +   F +
Sbjct: 340 RKQMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPDARTYTMIINEFCK 399

Query: 210 AQKVDEARGLLQQMKAKGFVP 230
              V +   LL++M+  G VP
Sbjct: 400 KGDVWKGSKLLKEMQRDGHVP 420


>gi|357130032|ref|XP_003566662.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 859

 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 87/168 (51%), Gaps = 9/168 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F KM ++GL    V       +L K G + +A ++F  +  KGHMPD+V+++ ++  Y
Sbjct: 355 KMFRKMTSKGLIPGIVTFNSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDLVSYSILLHGY 414

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           A+ G+  +   +F  M   G+  N + + +LI     +A     ++ +A     EM G+G
Sbjct: 415 ATEGRFADMNNLFHSMADKGIVANCHCFNILI-----SAHAKRGMMDEAMLVFTEMQGQG 469

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
           +RP+  TY+ +  AF R  ++ +A     QM + G  P+   V  +LI
Sbjct: 470 VRPDVVTYSTLISAFCRMGRLADAMEKFSQMISIGLEPN-TVVYHSLI 516



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 93/184 (50%), Gaps = 14/184 (7%)

Query: 45  KYVNTKSKLPPPYDPFKKVVDEEPTDPR--NLQEIFHKMRTEGLTNNAVKMFDAL----S 98
           +Y+ TK  +P     +  ++    T+ R  ++  +FH M  +G+  N    F+ L    +
Sbjct: 393 QYMTTKGHMPDLVS-YSILLHGYATEGRFADMNNLFHSMADKGIVANC-HCFNILISAHA 450

Query: 99  KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAY 158
           K G+  EA+ +F +++ +G  PDVV ++ +I A+   G+  +A+  F +M++ G+ PN  
Sbjct: 451 KRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMISIGLEPNTV 510

Query: 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM-RPNAGTYTAVFEAFVRAQKVDEAR 217
            Y  LI G     D     L  A++ + EM+ KG+ RPN   ++++  +     +V +A 
Sbjct: 511 VYHSLIHGFCMHGD-----LVKAKELVSEMMSKGIPRPNIVFFSSIIHSLCNEGRVMDAH 565

Query: 218 GLLQ 221
            +  
Sbjct: 566 DVFN 569



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 77/159 (48%), Gaps = 10/159 (6%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKG--HMPDVVAHTAVIEA 131
           + H+M   G   NA+    +  +L  D  + EAL +  ++  +G    PDVV+   VI  
Sbjct: 214 LLHRMSDLGCVPNAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHG 273

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +   G+  +A  +   M+  GV P+  TY  ++  L       A+ +  A+  L +MV K
Sbjct: 274 FFKQGEVSKACNLINEMVQKGVEPDVVTYNSIVDALC-----KARAMDKAELVLRQMVDK 328

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           G+ P+  TYTA+   +  +    E+  + ++M +KG +P
Sbjct: 329 GVEPDGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGLIP 367



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 70/146 (47%), Gaps = 7/146 (4%)

Query: 86  LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVF 145
           +T N++   DAL K     +A  +  Q+ DKG  PD + +TA+I  Y+ +G  KE+ ++F
Sbjct: 300 VTYNSI--VDALCKARAMDKAELVLRQMVDKGVEPDGLTYTAIIHGYSCSGHWKESAKMF 357

Query: 146 MRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFE 205
            +M + G+ P   T+   +  L     G +K   DA++    M  KG  P+  +Y+ +  
Sbjct: 358 RKMTSKGLIPGIVTFNSFMSSL--CKHGRSK---DAEEIFQYMTTKGHMPDLVSYSILLH 412

Query: 206 AFVRAQKVDEARGLLQQMKAKGFVPD 231
            +    +  +   L   M  KG V +
Sbjct: 413 GYATEGRFADMNNLFHSMADKGIVAN 438



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 5/133 (3%)

Query: 99  KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAY 158
           K G   +A  L  ++  KG  PDVV + ++++A   A    +A  V  +M+  GV P+  
Sbjct: 276 KQGEVSKACNLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAELVLRQMVDKGVEPDGL 335

Query: 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218
           TY  +I G + +  G+ K   ++ K   +M  KG+ P   T+ +   +  +  +  +A  
Sbjct: 336 TYTAIIHGYSCS--GHWK---ESAKMFRKMTSKGLIPGIVTFNSFMSSLCKHGRSKDAEE 390

Query: 219 LLQQMKAKGFVPD 231
           + Q M  KG +PD
Sbjct: 391 IFQYMTTKGHMPD 403



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 5/133 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D     G   +A  +   +   G  PDVV +  ++  Y  +G+  + L +F  ML   
Sbjct: 586 LIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLHKK 645

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V P   TY++++ GL  A   +A     A+K   EM+  G   +  TY  + +   R   
Sbjct: 646 VKPTTVTYSIVLDGLFHAGRTSA-----AKKMFHEMIDSGTAVDIDTYKILLKGLCRNDL 700

Query: 213 VDEARGLLQQMKA 225
            DEA  L  ++ A
Sbjct: 701 TDEAITLFHKLGA 713



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 67/172 (38%), Gaps = 30/172 (17%)

Query: 98  SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA 157
            K G   + L LF ++  K   P  V ++ V++    AG+   A ++F  M+ SG A + 
Sbjct: 626 CKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGLFHAGRTSAAKKMFHEMIDSGTAVDI 685

Query: 158 YTYAVLIKGLA---------------AAADG--NAKILG-------------DAQKYLME 187
            TY +L+KGL                 A D   +  IL              +A      
Sbjct: 686 DTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTVINALYKVRRREEANDLFAA 745

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
           +   G+ PN  TY  +    ++   V+EA  +   M+  G  P  + + + +
Sbjct: 746 ISTSGLVPNVSTYGVMIHNLLKEGSVEEADTMFSSMEKSGCAPSSRLLNDII 797



 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 73/162 (45%), Gaps = 15/162 (9%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGH-MPDVVAHTAVIEA 131
           E F +M + GL  N V    +       G   +A +L +++  KG   P++V  +++I +
Sbjct: 495 EKFSQMISIGLEPNTVVYHSLIHGFCMHGDLVKAKELVSEMMSKGIPRPNIVFFSSIIHS 554

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQK---YLMEM 188
             + G+  +A  VF  ++  G  P   T+  LI G          ++G  +K    L  M
Sbjct: 555 LCNEGRVMDAHDVFNLVIHIGDRPTIVTFNSLIDGYC--------LVGKMEKAFGVLDAM 606

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           V  G+ P+  TY  +   + ++ K+D+   L ++M  K   P
Sbjct: 607 VSVGIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLHKKVKP 648



 Score = 41.2 bits (95), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 3/96 (3%)

Query: 75  QEIFHKMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +++FH+M   G     +    +   L ++ LT EA+ LF ++       D+     VI A
Sbjct: 670 KKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTVINA 729

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
                + +EA  +F  +  SG+ PN  TY V+I  L
Sbjct: 730 LYKVRRREEANDLFAAISTSGLVPNVSTYGVMIHNL 765


>gi|302771417|ref|XP_002969127.1| hypothetical protein SELMODRAFT_61162 [Selaginella moellendorffii]
 gi|300163632|gb|EFJ30243.1| hypothetical protein SELMODRAFT_61162 [Selaginella moellendorffii]
          Length = 646

 Score = 84.0 bits (206), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 77/160 (48%), Gaps = 9/160 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQ-LFAQIKDKGHMPDVVAHTAVIEAY 132
           +F  M+ EG   NAV    M D   K G + + +Q LF ++KD    PD   +  +I A 
Sbjct: 96  LFETMQREGQRGNAVTYNVMLDLYGKRGDSWDRIQSLFQEMKDLEISPDDYTYNTMITAC 155

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
                 +EALR+F  M  +G  PN  TY  L+        G   +  +A + L+EM   G
Sbjct: 156 IQNSHCQEALRLFQEMKEAGCCPNRVTYNALLD-----VYGKGGMHKEASELLVEMEAAG 210

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           + PN  TY  +  A+ RA   DEA  L + + +KG  PDE
Sbjct: 211 ISPNIVTYNELIAAYARAGLCDEAAALKKSLLSKGLCPDE 250



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 87/177 (49%), Gaps = 13/177 (7%)

Query: 74  LQEIFHKMRT-----EGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           +Q +F +M+      +  T N   M  A  ++    EAL+LF ++K+ G  P+ V + A+
Sbjct: 129 IQSLFQEMKDLEISPDDYTYNT--MITACIQNSHCQEALRLFQEMKEAGCCPNRVTYNAL 186

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           ++ Y   G  KEA  + + M A+G++PN  TY  LI     AA   A +  +A      +
Sbjct: 187 LDVYGKGGMHKEASELLVEMEAAGISPNIVTYNELI-----AAYARAGLCDEAAALKKSL 241

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
           + KG+ P+  TY  +  AF RA++ ++A     +M+     P+       LID  G+
Sbjct: 242 LSKGLCPDEFTYCTLISAFNRAERYEKALETFTEMRKTNCTPN-IVTYNILIDIYGR 297



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 76/158 (48%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M+  G   N V    + D   K G+  EA +L  +++  G  P++V +  +I AYA
Sbjct: 167 LFQEMKEAGCCPNRVTYNALLDVYGKGGMHKEASELLVEMEAAGISPNIVTYNELIAAYA 226

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG   EA  +   +L+ G+ P+ +TY  LI     +A   A+    A +   EM     
Sbjct: 227 RAGLCDEAAALKKSLLSKGLCPDEFTYCTLI-----SAFNRAERYEKALETFTEMRKTNC 281

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            PN  TY  + + + R +K+D+   + + M+ K   PD
Sbjct: 282 TPNIVTYNILIDIYGRMEKLDDMMKVFKFMQEKNCTPD 319



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 72/158 (45%), Gaps = 8/158 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+  +M   G++ N V   ++  A ++ GL  EA  L   +  KG  PD   +  +I A+
Sbjct: 201 ELLVEMEAAGISPNIVTYNELIAAYARAGLCDEAAALKKSLLSKGLCPDEFTYCTLISAF 260

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             A + ++AL  F  M  +   PN  TY +LI        G  + L D  K    M  K 
Sbjct: 261 NRAERYEKALETFTEMRKTNCTPNIVTYNILID-----IYGRMEKLDDMMKVFKFMQEKN 315

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
             P+  T+ ++ ++F     + E   + ++MK  G++P
Sbjct: 316 CTPDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMP 353



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 67/142 (47%), Gaps = 6/142 (4%)

Query: 106 ALQLFAQIK-DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           AL+LF  +K D+ +  DV A+T++I   + A +  E + +F  M   G   NA TY V++
Sbjct: 57  ALELFESLKQDESYSLDVYAYTSLISILSRARRFDEGITLFETMQREGQRGNAVTYNVML 116

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
                  D   +I    Q    EM    + P+  TY  +  A ++     EA  L Q+MK
Sbjct: 117 DLYGKRGDSWDRI----QSLFQEMKDLEISPDDYTYNTMITACIQNSHCQEALRLFQEMK 172

Query: 225 AKGFVPDEKAVKEALIDKRGQG 246
             G  P+ +    AL+D  G+G
Sbjct: 173 EAGCCPN-RVTYNALLDVYGKG 193



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 69/157 (43%), Gaps = 14/157 (8%)

Query: 91  VKMFDAL----SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFM 146
           +K+F+A+    +K G    A++L  +I+     PD V +  ++  Y   G   +A  V  
Sbjct: 496 IKVFNAMISMCAKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMSMYGREGMYHKAEEVMS 555

Query: 147 RMLASGVAPNAYTYAVLIKGLA--AAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVF 204
            M  +G APN  TY  L+         D  A++ GD       MV   +RP+  T+  + 
Sbjct: 556 EMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGD-------MVAARVRPDNFTFNTLV 608

Query: 205 EAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
            ++       EA  +++ M   G  P +   K AL+D
Sbjct: 609 GSYSSLGLYKEALSVIEYMTEHGCQPTQITFK-ALLD 644



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/128 (20%), Positives = 67/128 (52%), Gaps = 7/128 (5%)

Query: 80  KMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGK 139
           +++ +G+T N   +     ++G+ H+A ++ ++++  G  P+++ +  ++ +Y   G+  
Sbjct: 526 QLKPDGVTYNC--LMSMYGREGMYHKAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMD 583

Query: 140 EALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGT 199
           +A RVF  M+A+ V P+ +T+  L+   ++       +  +A   +  M   G +P   T
Sbjct: 584 DAARVFGDMVAARVRPDNFTFNTLVGSYSSLG-----LYKEALSVIEYMTEHGCQPTQIT 638

Query: 200 YTAVFEAF 207
           + A+ + +
Sbjct: 639 FKALLDGY 646



 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 5/136 (3%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
           A  K  + +EA     Q+ D GH PD+    A+I   A  G  + A+++   +  + + P
Sbjct: 470 AYCKCCMDNEAQLALNQLYDNGHSPDIKVFNAMISMCAKRGWIERAVKLLEEIRKAQLKP 529

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY  L+     +  G   +   A++ + EM   G  PN  TY  +  ++ +  ++D+
Sbjct: 530 DGVTYNCLM-----SMYGREGMYHKAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMDD 584

Query: 216 ARGLLQQMKAKGFVPD 231
           A  +   M A    PD
Sbjct: 585 AARVFGDMVAARVRPD 600



 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 47/214 (21%), Positives = 84/214 (39%), Gaps = 36/214 (16%)

Query: 73  NLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           ++ ++F  M+ +  T + V    +  +    G+  E   +F ++K  G+MP V     +I
Sbjct: 303 DMMKVFKFMQEKNCTPDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFNILI 362

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA--------------------- 168
           E Y   G    ++ ++  +L +G+ P   T+A L+  LA                     
Sbjct: 363 ECYGRCGYVDYSVDIYKGLLRTGLQPTVPTFAALMASLAREGRWQQCEKVSQEMAEAGLQ 422

Query: 169 ---AAADG------NAKILGDAQKYLMEMVGKGMRPNAGTYTAVFE-AFVRAQKVDEARG 218
              A   G      N+      +KY+ E+     +P +G     F  A+ +    +EA+ 
Sbjct: 423 LSDACHAGLIHSYANSGQFFQLRKYIDELEKSAKQPLSGILCKTFVLAYCKCCMDNEAQL 482

Query: 219 LLQQMKAKGFVPDEKAVKE--ALIDKRGQGFRGV 250
            L Q+   G  PD K      ++  KRG   R V
Sbjct: 483 ALNQLYDNGHSPDIKVFNAMISMCAKRGWIERAV 516


>gi|255660942|gb|ACU25640.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 484

 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 83/168 (49%), Gaps = 12/168 (7%)

Query: 78  FHKMRTEGL-----TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           F+KM +EG+     T N +     LS  G    A + F  +K +  MPDVV +  ++  Y
Sbjct: 138 FNKMLSEGIEPTRHTFNVMMWGFFLS--GKVETANRFFEDMKSREIMPDVVTYNTMVNGY 195

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               + +EA + F+ M    + P   TY  LIKG  +        + DA + + EM G G
Sbjct: 196 CRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDR-----VDDALRLVEEMKGFG 250

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
           M+PNA TY+ +      A+K+ EAR +L++M  K   P + ++   LI
Sbjct: 251 MKPNAITYSTLLPGLCNAEKMSEARSILKEMVEKYIAPTDNSIFMRLI 298



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 82/171 (47%), Gaps = 30/171 (17%)

Query: 91  VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           V M D+  K G+  E++++F ++++ G    + ++ A+ +     G+   A R F +ML+
Sbjct: 84  VLMIDSYGKAGIVQESVKMFQKMEELGVERTIKSYDALFKVILRRGRYMMAKRYFNKMLS 143

Query: 151 SGVAPNAYTYAVLIKGLAAA----------------------------ADGNAKI--LGD 180
            G+ P  +T+ V++ G   +                             +G  ++  + +
Sbjct: 144 EGIEPTRHTFNVMMWGFFLSGKVETANRFFEDMKSREIMPDVVTYNTMVNGYCRVKKMEE 203

Query: 181 AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           A+KY +EM G+ + P   TYT + + +V   +VD+A  L+++MK  G  P+
Sbjct: 204 AEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDRVDDALRLVEEMKGFGMKPN 254



 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 63/120 (52%), Gaps = 6/120 (5%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA + F ++K +   P VV +T +I+ Y S  +  +ALR+   M   G+ PNA TY+ L+
Sbjct: 203 EAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDRVDDALRLVEEMKGFGMKPNAITYSTLL 262

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQKVDEARGLLQQM 223
            GL      NA+ + +A+  L EMV K + P +   +  +     +A  +D A  +L+ M
Sbjct: 263 PGLC-----NAEKMSEARSILKEMVEKYIAPTDNSIFMRLISGQCKAGDLDAAANVLKAM 317


>gi|255548724|ref|XP_002515418.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545362|gb|EEF46867.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1113

 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 84/165 (50%), Gaps = 8/165 (4%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D   ++ +  +M + GL  N          L + G   EA ++  +++D G  PDVV +T
Sbjct: 244 DTETVKSLLEEMESLGLKPNIYTYTICIRVLGRAGRIDEACRIMKRMEDDGCGPDVVTYT 303

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
            +I+A  +AG+  +A+ +F++M AS   P+  TY  ++   +   D     LG  +++  
Sbjct: 304 VLIDALCTAGKLDDAMELFVKMKASSHKPDRVTYITMLDKFSDCGD-----LGRVKEFWS 358

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           EM   G  P+  T+T +  A  +A  +DEA  LL  M+ +G +P+
Sbjct: 359 EMEADGYAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPN 403



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 77/163 (47%), Gaps = 8/163 (4%)

Query: 72  RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R  + IF+++++ GL  ++V    M    SK G   EA++L + + +    PD++   ++
Sbjct: 491 REAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQCEPDIIVINSL 550

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I     AG+  EA ++F R+    +AP   TY  LI GL     G    +  A +    M
Sbjct: 551 INTLYKAGRVDEAWKMFCRLKDMKLAPTVVTYNTLIAGL-----GKEGQVQRAMELFASM 605

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            G G  PN  T+  + +   +  +VD A  +L +M     +PD
Sbjct: 606 TGNGCPPNTITFNTILDCLCKNDEVDLALKMLYKMTTMNCMPD 648



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 67/149 (44%), Gaps = 5/149 (3%)

Query: 91  VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           + M D  S  G      + +++++  G+ PDV+  T ++ A   AG   EA  +   M  
Sbjct: 338 ITMLDKFSDCGDLGRVKEFWSEMEADGYAPDVITFTILVNALCKAGNIDEAFHLLDVMRK 397

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
            GV PN +TY  LI GL          L DA      M   G+ P A TY    + + ++
Sbjct: 398 QGVLPNLHTYNTLISGLL-----RVNRLDDALDLFNNMETLGVVPTAYTYILFIDFYGKS 452

Query: 211 QKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
            + D+A    ++MK +G  P+  A   +L
Sbjct: 453 GRSDKALETFEKMKIRGIAPNIVACNASL 481



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 66/139 (47%), Gaps = 5/139 (3%)

Query: 93   MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
            + D L K G   EA +LF ++ D G  P+   +  +I  +   G    A  +F RM+  G
Sbjct: 901  LLDGLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNTACELFKRMVREG 960

Query: 153  VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            + P+  +Y  L+  L  A       + DA  Y  ++   G+  ++  Y  + +   R+ +
Sbjct: 961  IRPDLKSYTSLVGCLCEAGR-----VDDALHYFEKLKQTGLYLDSIAYNLMIDGLGRSHR 1015

Query: 213  VDEARGLLQQMKAKGFVPD 231
            ++EA  L  +M+++G  PD
Sbjct: 1016 IEEALTLYDEMQSRGINPD 1034



 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 72/161 (44%), Gaps = 8/161 (4%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M+  G   +      + DA  K G  +E  +L+ Q+      P+ + H  +I    
Sbjct: 812 LFTEMKNAGCAPDVFTYNLLLDAHGKSGKINELFELYEQMICSSCKPNTITHNIIIANLV 871

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            +    +AL +F  +++   +P   TY  L+ GL  +       L +A++   EMV  G 
Sbjct: 872 KSNSLDKALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGR-----LEEAKELFEEMVDYGC 926

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
           RPN   Y  +   F +   V+ A  L ++M  +G  PD K+
Sbjct: 927 RPNNAIYNILINGFGKTGDVNTACELFKRMVREGIRPDLKS 967



 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 81/158 (51%), Gaps = 8/158 (5%)

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F+ M T G+   A   +   D   K G + +AL+ F ++K +G  P++VA  A + + 
Sbjct: 425 DLFNNMETLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNASLYSL 484

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           A  G+ +EA  +F R+ ++G+AP++ TY +++K  + A       + +A + L +M    
Sbjct: 485 AEMGRLREAKVIFNRLKSNGLAPDSVTYNMMMKCYSKAGQ-----VDEAIELLSDMSENQ 539

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
             P+     ++     +A +VDEA  +  ++K     P
Sbjct: 540 CEPDIIVINSLINTLYKAGRVDEAWKMFCRLKDMKLAP 577



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 76/165 (46%), Gaps = 8/165 (4%)

Query: 70   DPRNLQEIFHKMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
            D     E+F +M  EG+     +   +   L + G   +AL  F ++K  G   D +A+ 
Sbjct: 945  DVNTACELFKRMVREGIRPDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTGLYLDSIAYN 1004

Query: 127  AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
             +I+    + + +EAL ++  M + G+ P+ +TY  LI  L     G A ++  A K   
Sbjct: 1005 LMIDGLGRSHRIEEALTLYDEMQSRGINPDLFTYNSLILNL-----GVAGMVEQAGKLYE 1059

Query: 187  EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            E+   G+ PN  TY A+   +  +   D A  + ++M   G  P+
Sbjct: 1060 ELQFIGLEPNVFTYNALIRGYSMSGNSDSAYAVYKRMMVGGCSPN 1104



 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 69/140 (49%), Gaps = 6/140 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A  LF ++K+ G  PDV  +  +++A+  +G+  E   ++ +M+ S   PN  T+ ++I 
Sbjct: 809 AWNLFTEMKNAGCAPDVFTYNLLLDAHGKSGKINELFELYEQMICSSCKPNTITHNIIIA 868

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
            L  +       L  A     ++V     P   TY  + +  +++ +++EA+ L ++M  
Sbjct: 869 NLVKSNS-----LDKALDLFYDLVSGDFSPTPCTYGPLLDGLLKSGRLEEAKELFEEMVD 923

Query: 226 KGFVPDEKAVKEALIDKRGQ 245
            G  P+  A+   LI+  G+
Sbjct: 924 YGCRPN-NAIYNILINGFGK 942



 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 76/178 (42%), Gaps = 9/178 (5%)

Query: 74   LQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
            L E++ +M       N +    +   L K     +AL LF  +      P    +  +++
Sbjct: 844  LFELYEQMICSSCKPNTITHNIIIANLVKSNSLDKALDLFYDLVSGDFSPTPCTYGPLLD 903

Query: 131  AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
                +G+ +EA  +F  M+  G  PN   Y +LI G     D N      A +    MV 
Sbjct: 904  GLLKSGRLEEAKELFEEMVDYGCRPNNAIYNILINGFGKTGDVNT-----ACELFKRMVR 958

Query: 191  KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFR 248
            +G+RP+  +YT++      A +VD+A    +++K  G   D  A    +ID  G+  R
Sbjct: 959  EGIRPDLKSYTSLVGCLCEAGRVDDALHYFEKLKQTGLYLDSIAYN-LMIDGLGRSHR 1015



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 62/122 (50%), Gaps = 5/122 (4%)

Query: 110 FAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169
           F ++++ G   +  ++  +I     +G  +EAL ++ RM+  G+ P+  T++ L+     
Sbjct: 182 FGKMREAGFHLNAYSYNGLIHLLLQSGLCREALEMYRRMVLEGLKPSLKTFSALM----- 236

Query: 170 AADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFV 229
            A G  +     +  L EM   G++PN  TYT       RA ++DEA  ++++M+  G  
Sbjct: 237 VATGKRRDTETVKSLLEEMESLGLKPNIYTYTICIRVLGRAGRIDEACRIMKRMEDDGCG 296

Query: 230 PD 231
           PD
Sbjct: 297 PD 298



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 72/165 (43%), Gaps = 11/165 (6%)

Query: 73  NLQEIFH---KMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           N+ E FH    MR +G+  N      +   L +     +AL LF  ++  G +P    + 
Sbjct: 384 NIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDALDLFNNMETLGVVPTAYTYI 443

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
             I+ Y  +G+  +AL  F +M   G+APN       +  LA         L +A+    
Sbjct: 444 LFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNASLYSLAEMGR-----LREAKVIFN 498

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +   G+ P++ TY  + + + +A +VDEA  LL  M      PD
Sbjct: 499 RLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQCEPD 543



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 65/126 (51%), Gaps = 8/126 (6%)

Query: 78   FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
            F K++  GL  +++    M D L +     EAL L+ +++ +G  PD+  + ++I     
Sbjct: 988  FEKLKQTGLYLDSIAYNLMIDGLGRSHRIEEALTLYDEMQSRGINPDLFTYNSLILNLGV 1047

Query: 135  AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            AG  ++A +++  +   G+ PN +TY  LI+G + + + ++        Y   MVG G  
Sbjct: 1048 AGMVEQAGKLYEELQFIGLEPNVFTYNALIRGYSMSGNSDSA----YAVYKRMMVG-GCS 1102

Query: 195  PNAGTY 200
            PN GT+
Sbjct: 1103 PNTGTF 1108



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/117 (22%), Positives = 54/117 (46%), Gaps = 5/117 (4%)

Query: 114 KDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADG 173
           K+ G  P + ++  +IE +      + A  +F  M  +G AP+ +TY +L+      A G
Sbjct: 782 KELGVKPTLESYNFLIEGFLGVHNDEMAWNLFTEMKNAGCAPDVFTYNLLLD-----AHG 836

Query: 174 NAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
            +  + +  +   +M+    +PN  T+  +    V++  +D+A  L   + +  F P
Sbjct: 837 KSGKINELFELYEQMICSSCKPNTITHNIIIANLVKSNSLDKALDLFYDLVSGDFSP 893



 Score = 45.4 bits (106), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 36/63 (57%)

Query: 101  GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
            G+  +A +L+ +++  G  P+V  + A+I  Y+ +G    A  V+ RM+  G +PN  T+
Sbjct: 1049 GMVEQAGKLYEELQFIGLEPNVFTYNALIRGYSMSGNSDSAYAVYKRMMVGGCSPNTGTF 1108

Query: 161  AVL 163
            A L
Sbjct: 1109 AQL 1111



 Score = 42.4 bits (98), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+G    A++LFA +   G  P+ +    +++      +   AL++  +M      P
Sbjct: 588 GLGKEGQVQRAMELFASMTGNGCPPNTITFNTILDCLCKNDEVDLALKMLYKMTTMNCMP 647

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  T+  +I GL        K + DA  +L   + K + P+  T   +    V+   +++
Sbjct: 648 DVLTFNTIIHGLVI-----EKRVSDAI-WLFHQMKKMLTPDCVTLCTLLPGVVKNGLMED 701

Query: 216 A 216
           A
Sbjct: 702 A 702


>gi|46518447|gb|AAS99705.1| At1g62720 [Arabidopsis thaliana]
          Length = 426

 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 83/166 (50%), Gaps = 24/166 (14%)

Query: 85  GLTNNAVKMFDALSKDGLTHEAL---QLFAQIKDKGH----------------MPDVVAH 125
           GL N+AV++FD + +DG+  +A+    L A +   G                 +P+V+  
Sbjct: 129 GLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITF 188

Query: 126 TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185
           TAVI+ +   G+  EA++++  M    V P+ +TY  LI GL          + +A++ L
Sbjct: 189 TAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGR-----VDEAKQML 243

Query: 186 MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             MV KG  P+  TY  +   F ++++VDE   L ++M  +G V D
Sbjct: 244 DLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGD 289



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 71/139 (51%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +   +     +A+ L +++++ G  PDVV +  +I+     G   +A+ +F RM   G
Sbjct: 86  LINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDG 145

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V  +A TY  L+ GL  +   +     DA + + +MV + + PN  T+TAV + FV+  K
Sbjct: 146 VRADAVTYNSLVAGLCCSGRWS-----DAARLMRDMVMRDIVPNVITFTAVIDVFVKEGK 200

Query: 213 VDEARGLLQQMKAKGFVPD 231
             EA  L ++M  +   PD
Sbjct: 201 FSEAMKLYEEMTRRCVDPD 219



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 79/189 (41%), Gaps = 36/189 (19%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +++   M T+G   + V    + +   K     E  +LF ++  +G + D + +  +I+ 
Sbjct: 240 KQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQG 299

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA----------------------- 168
           Y  AG+   A  +F RM +    PN  TY++L+ GL                        
Sbjct: 300 YFQAGRPDAAQEIFSRMDSR---PNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELD 356

Query: 169 -----AAADGNAKI--LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221
                    G  KI  + DA      +  KG++P+  +YT +   F R ++ D++  L +
Sbjct: 357 ITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYR 416

Query: 222 QMKAKGFVP 230
           +M+  G +P
Sbjct: 417 KMQEDGLLP 425



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 8/132 (6%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L   G   EA Q+   +  KG +PDVV +  +I  +  + +  E  ++F  M   G
Sbjct: 226 LINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRG 285

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +  +  TY  +I+G   A   +A     AQ+    M     RPN  TY+ +        +
Sbjct: 286 LVGDTITYNTIIQGYFQAGRPDA-----AQEIFSRM---DSRPNIRTYSILLYGLCMNWR 337

Query: 213 VDEARGLLQQMK 224
           V++A  L + M+
Sbjct: 338 VEKALVLFENMQ 349



 Score = 44.7 bits (104), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 30/136 (22%), Positives = 60/136 (44%), Gaps = 12/136 (8%)

Query: 119 MPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADG--NAK 176
           +P +V  + V+   A +      + +F  M   G+  + Y+Y ++I  L   +       
Sbjct: 7   LPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALS 66

Query: 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK 236
           ++G   K+       G  P+  T +++   F +  +V +A  L+ +M+  GF PD   + 
Sbjct: 67  VVGKMMKF-------GYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPD-VVIY 118

Query: 237 EALIDKRGQGFRGVIN 252
             +ID  G    G++N
Sbjct: 119 NTIID--GSCKIGLVN 132


>gi|413955492|gb|AFW88141.1| hypothetical protein ZEAMMB73_138069 [Zea mays]
          Length = 1091

 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 99/213 (46%), Gaps = 34/213 (15%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D +++ E+++ M  +G  +N V    + DAL + G   EAL +F ++K+KG  P+  ++ 
Sbjct: 326 DSQSVVEVWNAMVADGYNDNIVSYTAVVDALCQVGRVDEALAVFDEMKEKGMSPEQYSYN 385

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI---------------------K 165
           ++I  +  A     AL +F  M A G +PN YT+ + I                     K
Sbjct: 386 SLISGFLKADMFDRALELFNHMNACGPSPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSK 445

Query: 166 GLAA-AADGNAKI--------LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
           G+    A  NA +        LG A++   E+   G+ P+  TYT + +   +A K DEA
Sbjct: 446 GIVPDVAAANAVLYSLAGSGRLGMAKRVFYELKAMGVSPDTITYTMMIKCCSKASKADEA 505

Query: 217 RGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRG 249
                 M   G VPD  A+  +LID   +G +G
Sbjct: 506 MNFFSDMVESGCVPDVLALN-SLIDTLYKGGKG 537



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 65/128 (50%), Gaps = 5/128 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA  +  +++D G  PDVV HT +I+    AG+  +A  VF +M AS   P+  TY  L+
Sbjct: 259 EAYHILGKMEDSGCKPDVVTHTVIIQVLCDAGRLSDAKAVFWKMKASDQKPDRVTYITLL 318

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
                + D  + +     +    MV  G   N  +YTAV +A  +  +VDEA  +  +MK
Sbjct: 319 DKCGDSGDSQSVV-----EVWNAMVADGYNDNIVSYTAVVDALCQVGRVDEALAVFDEMK 373

Query: 225 AKGFVPDE 232
            KG  P++
Sbjct: 374 EKGMSPEQ 381



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 77/160 (48%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +F++++  G++ + +    M    SK     EA+  F+ + + G +PDV+A  ++I+ 
Sbjct: 471 KRVFYELKAMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVESGCVPDVLALNSLIDT 530

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G+G EA ++F ++    + P   TY  L+ GL    +G  K   +  + L EM   
Sbjct: 531 LYKGGKGNEAWQLFHKLKEMKIEPTNGTYNTLLSGL--GREGKVK---EVMQLLEEMTRT 585

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              PN  TY  V +   +  +V+ A  +L  M  KG  PD
Sbjct: 586 IYPPNLITYNTVLDCLSKNGEVNCAIDMLYSMTEKGCAPD 625



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 78/158 (49%), Gaps = 8/158 (5%)

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F+ M   G + N    V   +   K G + +A+Q +  +K KG +PDV A  AV+ + 
Sbjct: 402 ELFNHMNACGPSPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLYSL 461

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           A +G+   A RVF  + A GV+P+  TY ++IK  + A+  +     +A  +  +MV  G
Sbjct: 462 AGSGRLGMAKRVFYELKAMGVSPDTITYTMMIKCCSKASKAD-----EAMNFFSDMVESG 516

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
             P+     ++ +   +  K +EA  L  ++K     P
Sbjct: 517 CVPDVLALNSLIDTLYKGGKGNEAWQLFHKLKEMKIEP 554



 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 78/166 (46%), Gaps = 10/166 (6%)

Query: 70   DPRNLQEIFHKMRTEGLTNNAVK----MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAH 125
            +  N+ ++F KM  +G+ N  +K    + D L   G  ++ L  F Q+ + G  PD++ +
Sbjct: 921  NTENVCQLFEKMVEQGI-NPDIKSYTILIDTLCTAGRLNDGLCYFRQLHELGLEPDLIVY 979

Query: 126  TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185
              +I+    + + +EA+ +F  M   G+ PN YTY  LI  L  A          AQ Y 
Sbjct: 980  NLLIDGLGKSERIEEAVSLFNEMKKKGIIPNLYTYNSLILHLGKAGKAAEA----AQMY- 1034

Query: 186  MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             E++ KG +P+  TY A+   +  +   D A     QM   G  P+
Sbjct: 1035 EELLRKGWKPSVFTYNALIRGYSVSGSTDNAYAAYGQMIVGGCQPN 1080



 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 78/167 (46%), Gaps = 9/167 (5%)

Query: 81  MRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ 137
           MR  G++ NA     +   L K G   EA++++  + + G  P V  ++ ++ A+     
Sbjct: 162 MREAGMSLNAYTYNGLIYFLVKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVAFGKKRD 221

Query: 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA 197
               L +   M A GV PN Y+Y + I+ L  AA        +A   L +M   G +P+ 
Sbjct: 222 VDTVLWLLNEMEARGVKPNVYSYTICIRVLGQAAR-----FDEAYHILGKMEDSGCKPDV 276

Query: 198 GTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRG 244
            T+T + +    A ++ +A+ +  +MKA    PD +     L+DK G
Sbjct: 277 VTHTVIIQVLCDAGRLSDAKAVFWKMKASDQKPD-RVTYITLLDKCG 322



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 74/165 (44%), Gaps = 5/165 (3%)

Query: 91  VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           + + D     G +   ++++  +   G+  ++V++TAV++A    G+  EAL VF  M  
Sbjct: 315 ITLLDKCGDSGDSQSVVEVWNAMVADGYNDNIVSYTAVVDALCQVGRVDEALAVFDEMKE 374

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
            G++P  Y+Y  LI G        A +   A +    M   G  PN  T+      + ++
Sbjct: 375 KGMSPEQYSYNSLISGFL-----KADMFDRALELFNHMNACGPSPNGYTHVLFINYYGKS 429

Query: 211 QKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILF 255
            +  +A    + MK+KG VPD  A    L    G G  G+   +F
Sbjct: 430 GQSLKAIQRYEHMKSKGIVPDVAAANAVLYSLAGSGRLGMAKRVF 474



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 78/159 (49%), Gaps = 8/159 (5%)

Query: 75   QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            + +F++M   G   N      + +     G T    QLF ++ ++G  PD+ ++T +I+ 
Sbjct: 891  ENLFNEMLEYGCEPNCTIYNILLNGHRIAGNTENVCQLFEKMVEQGINPDIKSYTILIDT 950

Query: 132  YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              +AG+  + L  F ++   G+ P+   Y +LI GL     G ++ + +A     EM  K
Sbjct: 951  LCTAGRLNDGLCYFRQLHELGLEPDLIVYNLLIDGL-----GKSERIEEAVSLFNEMKKK 1005

Query: 192  GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
            G+ PN  TY ++     +A K  EA  + +++  KG+ P
Sbjct: 1006 GIIPNLYTYNSLILHLGKAGKAAEAAQMYEELLRKGWKP 1044



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 82/187 (43%), Gaps = 15/187 (8%)

Query: 60  FKKVVDEEPTDPRNLQEIFHKMRTEG-----LTNNAVKMFDALSKDGLTHEALQLFAQIK 114
            + +VDE   D    +++F +M+  G      T N +   DA+ K     E L++  ++ 
Sbjct: 773 IRGLVDENLIDIA--EDLFTEMKRLGCGPDEFTYNLI--LDAMGKSMRVEEMLKVQKEMH 828

Query: 115 DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174
            KG+    V +  +I     + + ++A+ ++  +++ G +P   TY  L+ GL  +    
Sbjct: 829 RKGYESTYVTYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKSGK-- 886

Query: 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
              + DA+    EM+  G  PN   Y  +      A   +    L ++M  +G  PD K+
Sbjct: 887 ---MVDAENLFNEMLEYGCEPNCTIYNILLNGHRIAGNTENVCQLFEKMVEQGINPDIKS 943

Query: 235 VKEALID 241
               LID
Sbjct: 944 YT-ILID 949



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 74/162 (45%), Gaps = 8/162 (4%)

Query: 73  NLQEIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           ++ ++F  M+ + +  N      +F  +  +G    A      +++ G   +   +  +I
Sbjct: 119 DMAQVFDLMQKQVVKTNVGTFATIFGGVGVEGGLRSAPVALPVMREAGMSLNAYTYNGLI 178

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
                +G   EA+ V+  M+  G++P+  TY+VL+      A G  + +      L EM 
Sbjct: 179 YFLVKSGFDAEAMEVYKAMVEDGISPSVRTYSVLM-----VAFGKKRDVDTVLWLLNEME 233

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +G++PN  +YT       +A + DEA  +L +M+  G  PD
Sbjct: 234 ARGVKPNVYSYTICIRVLGQAARFDEAYHILGKMEDSGCKPD 275



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 69/160 (43%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            ++F+K +  G+   T +   +   L  + L   A  LF ++K  G  PD   +  +++A
Sbjct: 751 HQLFNKFKGLGVSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKRLGCGPDEFTYNLILDA 810

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              + + +E L+V   M   G      TY  +I GL       +K L  A      ++ +
Sbjct: 811 MGKSMRVEEMLKVQKEMHRKGYESTYVTYNTIISGLV-----KSKRLEQAIDLYYNLMSE 865

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G  P   TY  + +  +++ K+ +A  L  +M   G  P+
Sbjct: 866 GFSPTPCTYGPLLDGLLKSGKMVDAENLFNEMLEYGCEPN 905



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 57/108 (52%), Gaps = 5/108 (4%)

Query: 93   MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
            + D L K     EA+ LF ++K KG +P++  + ++I     AG+  EA +++  +L  G
Sbjct: 982  LIDGLGKSERIEEAVSLFNEMKKKGIIPNLYTYNSLILHLGKAGKAAEAAQMYEELLRKG 1041

Query: 153  VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTY 200
              P+ +TY  LI+G + +   +     +A     +M+  G +PN+ TY
Sbjct: 1042 WKPSVFTYNALIRGYSVSGSTD-----NAYAAYGQMIVGGCQPNSSTY 1084



 Score = 40.0 bits (92), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 24/111 (21%)

Query: 77   IFHKMRTEGL-----TNNAVKMFDALSKDGL-----THEAL--------------QLFAQ 112
            I + +  +GL        AV +F+ + K G+     T+ +L              Q++ +
Sbjct: 977  IVYNLLIDGLGKSERIEEAVSLFNEMKKKGIIPNLYTYNSLILHLGKAGKAAEAAQMYEE 1036

Query: 113  IKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
            +  KG  P V  + A+I  Y+ +G    A   + +M+  G  PN+ TY  L
Sbjct: 1037 LLRKGWKPSVFTYNALIRGYSVSGSTDNAYAAYGQMIVGGCQPNSSTYMQL 1087


>gi|255570715|ref|XP_002526312.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534393|gb|EEF36101.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 729

 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 81/162 (50%), Gaps = 11/162 (6%)

Query: 74  LQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           LQE   +M T+G   + +      + L K G   EA +L  ++   GH+PD V +T+ + 
Sbjct: 504 LQE---EMLTKGFPPDVITYNVFVNGLCKLGNLEEAGELLQKMIRDGHVPDHVTYTSFMH 560

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
           A+   G  +E   +F  ML+ G  P   TY VLI   A A +G    L  A  Y +EM  
Sbjct: 561 AHMENGHLREGREIFYDMLSRGQTPTVVTYTVLIH--AHALNGR---LDWAMAYFLEMQE 615

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           KG+ PN  TY  +   F + +K+D+A     +M+ KG  P++
Sbjct: 616 KGVVPNVITYNVLINGFCKVRKMDQACKFFIEMQEKGIFPNK 657



 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 79/176 (44%), Gaps = 9/176 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+  KM  +G   + V       A  ++G   E  ++F  +  +G  P VV +T +I A+
Sbjct: 538 ELLQKMIRDGHVPDHVTYTSFMHAHMENGHLREGREIFYDMLSRGQTPTVVTYTVLIHAH 597

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           A  G+   A+  F+ M   GV PN  TY VLI G         + +  A K+ +EM  KG
Sbjct: 598 ALNGRLDWAMAYFLEMQEKGVVPNVITYNVLINGFC-----KVRKMDQACKFFIEMQEKG 652

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFR 248
           + PN  TYT +        K  EA  L  QM  K   PD      AL+ K  + ++
Sbjct: 653 IFPNKYTYTILINENCNMGKWQEALRLYAQMLGKRIRPDS-CTHGALLKKLDKDYK 707



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 74/145 (51%), Gaps = 8/145 (5%)

Query: 72  RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R  +EIF+ M + G T   V    +  A + +G    A+  F ++++KG +P+V+ +  +
Sbjct: 569 REGREIFYDMLSRGQTPTVVTYTVLIHAHALNGRLDWAMAYFLEMQEKGVVPNVITYNVL 628

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I  +    +  +A + F+ M   G+ PN YTY +LI       + N     +A +   +M
Sbjct: 629 INGFCKVRKMDQACKFFIEMQEKGIFPNKYTYTILIN-----ENCNMGKWQEALRLYAQM 683

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKV 213
           +GK +RP++ T+ A+ +   +  KV
Sbjct: 684 LGKRIRPDSCTHGALLKKLDKDYKV 708



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 69/159 (43%), Gaps = 8/159 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  ++R   L+ N V    + D L + G    AL+L   + ++G  PDVV +T ++    
Sbjct: 399 LLDELRFRNLSFNIVTYNTLIDGLCRLGDLETALKLKEDMINRGIHPDVVTYTVLVNGAC 458

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G    A   F  ML  G+AP+ + Y   I G     D        A K   EM+ KG 
Sbjct: 459 KLGNMLMAKEFFDEMLHVGLAPDQFAYTARIVGELKLGDT-----AKAFKLQEEMLTKGF 513

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
            P+  TY        +   ++EA  LLQ+M   G VPD 
Sbjct: 514 PPDVITYNVFVNGLCKLGNLEEAGELLQKMIRDGHVPDH 552



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M  +  K G    AL L  +++++G  P  V    +I   +  G+ ++A  +   M  +G
Sbjct: 243 MLHSFCKGGEVQRALDLVPKMQERGCYPSEVTFNVLINGLSKKGELQQAKGLIQEMAKAG 302

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +  + YTY  LI G          +L +A     EMV +G+ P   ++  +   F +  K
Sbjct: 303 LRVSPYTYNPLICGYCKKG-----LLVEALALWEEMVTRGVSPTVASHNTIMYGFCKEGK 357

Query: 213 VDEARGLLQQMKAKGFVPD 231
           + +AR  L  M  K  +PD
Sbjct: 358 MSDARQQLSDMLKKNLMPD 376



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 5/139 (3%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
              K+G   +A Q  + +  K  MPD++++  +I  +   G   EA  +   +    ++ 
Sbjct: 351 GFCKEGKMSDARQQLSDMLKKNLMPDIISYNTLIYGFCRLGNIGEAFILLDELRFRNLSF 410

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           N  TY  LI GL    D     L  A K   +M+ +G+ P+  TYT +     +   +  
Sbjct: 411 NIVTYNTLIDGLCRLGD-----LETALKLKEDMINRGIHPDVVTYTVLVNGACKLGNMLM 465

Query: 216 ARGLLQQMKAKGFVPDEKA 234
           A+    +M   G  PD+ A
Sbjct: 466 AKEFFDEMLHVGLAPDQFA 484



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 72/157 (45%), Gaps = 8/157 (5%)

Query: 77  IFHKM-RTEGL--TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F KM R   L    N  ++   L    L  +AL+++  + + G  P V  +  ++ ++ 
Sbjct: 189 VFEKMMRNRFLPDVKNCNRILKILRDKNLLVKALEVYRMMGEYGIRPTVTTYNTMLHSFC 248

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G+ + AL +  +M   G  P+  T+ VLI GL+   +     L  A+  + EM   G+
Sbjct: 249 KGGEVQRALDLVPKMQERGCYPSEVTFNVLINGLSKKGE-----LQQAKGLIQEMAKAGL 303

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           R +  TY  +   + +   + EA  L ++M  +G  P
Sbjct: 304 RVSPYTYNPLICGYCKKGLLVEALALWEEMVTRGVSP 340


>gi|297848948|ref|XP_002892355.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338197|gb|EFH68614.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 988

 Score = 84.0 bits (206), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 57/180 (31%), Positives = 87/180 (48%), Gaps = 16/180 (8%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M+  GL  +      M D+  K GL  +A + F ++++ G  P+VV +TA+I AY 
Sbjct: 505 LFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYL 564

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD-----------GNAKILGDAQ 182
            A +   A  +F  ML+ G  PN  TY+ LI G   A               +K + D  
Sbjct: 565 KAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQMEKACQIFERMCGSKDVPDVD 624

Query: 183 KYLMEM-VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
            Y  +       RPN   Y A+ + F +  +V+EAR LL  M  +G  P++  V +ALID
Sbjct: 625 MYFKQYDDDNSERPNVVIYGALLDGFCKLHRVEEARKLLDAMSMEGCEPNQ-IVYDALID 683



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/160 (28%), Positives = 78/160 (48%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +++   M  EG   N +    + D L K G   EA ++ A++ + G    +  ++++I+ 
Sbjct: 660 RKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKAEMSEHGFPATLYTYSSLIDR 719

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y    +   A +V  +ML +  APN   Y  +I GL      +     +A K +  M  K
Sbjct: 720 YFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTD-----EAYKLMQMMEEK 774

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G +PN  TYTA+ + F R  K++    LL++M +KG  P+
Sbjct: 775 GCQPNVVTYTAMIDGFGRIGKIETCLELLERMGSKGVAPN 814



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 63/246 (25%), Positives = 110/246 (44%), Gaps = 26/246 (10%)

Query: 14  PSPKRSLRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKKVVDEEPTDPRN 73
           PSPK    I N+ V+A       S + +  KK V  K    P Y  +  ++     D  +
Sbjct: 370 PSPK----IFNSLVHAYCTSGDHSYAYKLLKKMV--KCGHTPGYVVYNILIGSICGDKDS 423

Query: 74  L--------QEIFHKMRTEGLTNNAVKMFD---ALSKDGLTHEALQLFAQIKDKGHMPDV 122
           L        ++ + +M   G+  N + +      L   G   +A  +  ++  +G +PD 
Sbjct: 424 LSCHLLELAEKAYSEMLATGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDT 483

Query: 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQ 182
             ++ V+    +A + + A  +F  M   G+  + YTY +++     A      ++  A+
Sbjct: 484 STYSKVLGYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAG-----LIEQAR 538

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID- 241
           K+  EM   G  PN  TYTA+  A+++A+KV  A  L + M ++G +P+      ALID 
Sbjct: 539 KWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPN-IVTYSALIDG 597

Query: 242 --KRGQ 245
             K GQ
Sbjct: 598 HCKAGQ 603



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 50/158 (31%), Positives = 74/158 (46%), Gaps = 10/158 (6%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++  KM       N V   +M D L K G T EA +L   +++KG  P+VV +TA+I+ +
Sbjct: 731 KVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGF 790

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+ +  L +  RM + GVAPN  TY VLI       +G   +   A   L EM    
Sbjct: 791 GRIGKIETCLELLERMGSKGVAPNYVTYRVLID--HCCKNGALDV---AHNLLEEMKQTH 845

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
              +A  Y  V E F   ++  E+ GLL ++      P
Sbjct: 846 WPTHAAGYRKVIEGF--NKEFIESLGLLDEIGQDDTAP 881



 Score = 60.5 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 36/126 (28%), Positives = 63/126 (50%), Gaps = 5/126 (3%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A  LF ++K  G + DV  +T +++++  AG  ++A + F  M   G  PN  TY  LI 
Sbjct: 502 AFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIH 561

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
                    AK +  A +    M+ +G  PN  TY+A+ +   +A ++++A  + ++M  
Sbjct: 562 AYL-----KAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQMEKACQIFERMCG 616

Query: 226 KGFVPD 231
              VPD
Sbjct: 617 SKDVPD 622



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 52/220 (23%), Positives = 82/220 (37%), Gaps = 51/220 (23%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQI-----------------KD 115
           E+F  M +EG   N V    + D   K G   +A Q+F ++                  D
Sbjct: 574 ELFETMLSEGCLPNIVTYSALIDGHCKAGQMEKACQIFERMCGSKDVPDVDMYFKQYDDD 633

Query: 116 KGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA--DG 173
               P+VV + A+++ +    + +EA ++   M   G  PN   Y  LI GL      D 
Sbjct: 634 NSERPNVVIYGALLDGFCKLHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDE 693

Query: 174 NAKILGD----------------------------AQKYLMEMVGKGMRPNAGTYTAVFE 205
             ++  +                            A K L +M+     PN   YT + +
Sbjct: 694 AQEVKAEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMID 753

Query: 206 AFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
              +  K DEA  L+Q M+ KG  P+      A+ID  G+
Sbjct: 754 GLCKVGKTDEAYKLMQMMEEKGCQPN-VVTYTAMIDGFGR 792



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 8/135 (5%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
           +L K G   EAL L   ++ +  +PD V +T +I     A   +EA+    RM A+   P
Sbjct: 279 SLCKVGKWREALTL---METENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLP 335

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           N  TY+ L+ G       N K LG  ++ L  M+ +G  P+   + ++  A+  +     
Sbjct: 336 NVVTYSTLLCGCL-----NKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSY 390

Query: 216 ARGLLQQMKAKGFVP 230
           A  LL++M   G  P
Sbjct: 391 AYKLLKKMVKCGHTP 405



 Score = 49.3 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 79/204 (38%), Gaps = 39/204 (19%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT----- 126
           +E    M TE    + V   K+   L +  L  EA+    +++    +P+VV ++     
Sbjct: 287 REALTLMETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCG 346

Query: 127 ------------------------------AVIEAYASAGQGKEALRVFMRMLASGVAPN 156
                                         +++ AY ++G    A ++  +M+  G  P 
Sbjct: 347 CLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHTPG 406

Query: 157 AYTYAVLIKGLAAAADG-NAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
              Y +LI  +    D  +  +L  A+K   EM+  G+  N    ++       A K ++
Sbjct: 407 YVVYNILIGSICGDKDSLSCHLLELAEKAYSEMLATGVVLNKINVSSFTRCLCSAGKYEK 466

Query: 216 ARGLLQQMKAKGFVPDEKAVKEAL 239
           A  ++++M  +GF+PD     + L
Sbjct: 467 AFSVIREMIGQGFIPDTSTYSKVL 490



 Score = 40.0 bits (92), Expect = 0.90,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 72/162 (44%), Gaps = 14/162 (8%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVA-HTAVIEA 131
           E+  +M ++G+  N V    + D   K+G    A  L  ++K + H P   A +  VIE 
Sbjct: 801 ELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMK-QTHWPTHAAGYRKVIEG 859

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA--DGNAKILGDAQKYLMEMV 189
           +    +  E+L +   +     AP    Y +L+  L  A   +   ++L +   +   +V
Sbjct: 860 FNK--EFIESLGLLDEIGQDDTAPFLSLYRLLVDNLIKAQRLEMALRLLEEVATFSATLV 917

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
                  + TY ++ E+   A KVD+A  L  +M  KG +P+
Sbjct: 918 DY-----SSTYNSLIESLCLANKVDKAFRLFSEMSKKGVIPE 954


>gi|255660840|gb|ACU25589.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
          Length = 418

 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 110/236 (46%), Gaps = 13/236 (5%)

Query: 2   AATAILRWLLHSPSPKRS-LRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPF 60
           +A+A+   +L +   +RS + + +  + A L+      + +  +  +  ++K   P+D  
Sbjct: 47  SASAVFATILETKGAQRSDIYVFSGLITAYLESGFLRDAIECFR--LTRENKYWVPFDTC 104

Query: 61  KKVVDE-EPTDPRNLQEIFHKMRTEGLTNNAVKMF----DALSKDGLTHEALQLFAQIKD 115
           +KV++         L   F+K   E     ++  F    D   K+G    A  +F  I  
Sbjct: 105 RKVLEHLMKLKYFKLVWSFYKEILECRYPASLYFFNILMDRFCKEGEIRLAQSVFDGITK 164

Query: 116 KGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNA 175
            G  P VV+   ++  Y   G   E  R+   M ASGV P+ YTY+VLI GL   +    
Sbjct: 165 WGLRPSVVSFNTLMNGYIKLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESK--- 221

Query: 176 KILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             + +A K   EM+ +G+ PN  T+T + +   +  K+D A  + +QM ++GF PD
Sbjct: 222 --MDEAHKLFDEMLDRGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQMLSQGFSPD 275



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 77/158 (48%), Gaps = 8/158 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           EI+ +M ++G + + +    +   L K G   +A  L  ++  KG  PD + +T +I+  
Sbjct: 262 EIYKQMLSQGFSPDXITYNTLIYGLCKKGDLXQAKDLXDEMSMKGLKPDKITYTTLIDGS 321

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G  + A     RM+   +  +  +Y  LI GL    +G +    DA+K L EM+  G
Sbjct: 322 CKEGDLETAFEYRKRMIKENIRLDDVSYTALISGLCK--EGRSV---DAEKMLREMLSVG 376

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           ++P+ GTYT V   F +   V     LL++M+  G VP
Sbjct: 377 LKPDTGTYTIVMHEFCKNGDVKMGSKLLKEMQRDGHVP 414



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 65/124 (52%), Gaps = 5/124 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K+    EA +LF ++ D+G +P+ V  T +I+ +   G+   A+ ++ +ML+ G
Sbjct: 212 LINGLCKESKMDEAHKLFDEMLDRGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQMLSQG 271

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            +P+  TY  LI GL    D     L  A+    EM  KG++P+  TYT + +   +   
Sbjct: 272 FSPDXITYNTLIYGLCKKGD-----LXQAKDLXDEMSMKGLKPDKITYTTLIDGSCKEGD 326

Query: 213 VDEA 216
           ++ A
Sbjct: 327 LETA 330


>gi|255660836|gb|ACU25587.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
          Length = 418

 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 110/237 (46%), Gaps = 15/237 (6%)

Query: 2   AATAILRWLLHSPSPKRS-LRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPF 60
           +A+A+   +L +   +RS + + +  + A L+      + +  +  +  + K   P+D  
Sbjct: 47  SASAVFEAILEAKGAQRSDVYVFSGLITAYLESGFLHDALECFR--LTREHKFWVPFDTC 104

Query: 61  KKVVDEEPTDPRNLQEI--FHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIK 114
           +KV+ E     +  + +  F+K   E     ++  F+ L     K+G    A  +F +I 
Sbjct: 105 RKVL-EHFMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDEIT 163

Query: 115 DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174
             G  P VV+   ++  Y   G   E  R+   M ASGV P+ YTY+VLI GL   +  N
Sbjct: 164 KWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMN 223

Query: 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
                DA +   EM+G G+ PN  T+T + +   +   +D A    ++M  +GF PD
Sbjct: 224 -----DANELFGEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAMETYKEMLRQGFSPD 275



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 8/158 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E + +M  +G + + +    +   L K G   +A  L  ++  KG  PD + +T +I+  
Sbjct: 262 ETYKEMLRQGFSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGS 321

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G  + AL    RM+   +  +   Y  LI GL            DA+K L EM+  G
Sbjct: 322 CKEGDLETALYYRKRMIKENIRLDDVAYTALISGLCREGQSV-----DAEKMLREMLSVG 376

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           ++P+ GTYT +   F +   V     LL++M+  G VP
Sbjct: 377 LKPDNGTYTMIINEFCKKGDVKTGSKLLKEMQRDGHVP 414


>gi|262316879|emb|CAZ44328.1| restoring pentatricopeptide repeat protein homologue [Raphanus
           sativus]
          Length = 681

 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 72/139 (51%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L KDG   +A  L+ ++++KG  PD+  +  +I+ + S+G+  EA R+   ML   
Sbjct: 255 IIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERK 314

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN  TY+ LI           +   +A++   EM+ +G+ PN  TY ++ + F +  +
Sbjct: 315 INPNVVTYSALINAYV-----KERKFFEAEELYDEMLPRGIIPNTITYNSMIDGFCKQNR 369

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +D A  +   M  KG  PD
Sbjct: 370 LDAAEHMFYVMATKGCSPD 388



 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 86/159 (54%), Gaps = 9/159 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM-PDVVAHTAVIEAY 132
           +  +M  +GL  N +    + D + K G T  AL L  ++++  H+ P+VV ++A+I+  
Sbjct: 200 LLDRMVEDGLQPNQITYGTIVDGMCKIGDTVSALNLLRKMEEMSHIKPNVVIYSAIIDGL 259

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+  +A  ++  M   G+ P+ +TY  +I G  ++   +     +AQ+ L EM+ + 
Sbjct: 260 WKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWS-----EAQRLLQEMLERK 314

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + PN  TY+A+  A+V+ +K  EA  L  +M  +G +P+
Sbjct: 315 INPNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPN 353



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/202 (27%), Positives = 85/202 (42%), Gaps = 21/202 (10%)

Query: 46  YVNTKSKLPPPYDPFKKVVDEEPTDPR--NLQEIFHKMRTEGL---TNNAVKMFDALSKD 100
           YV       P    F  ++D      R  +  E+ H+M   GL   T     +       
Sbjct: 378 YVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLV 437

Query: 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS--------- 151
           G  + AL L  Q+   G  PD+V    +++     G+ K+AL +F  M  S         
Sbjct: 438 GDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRP 497

Query: 152 --GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
             GV P+  TY +LI GL        K L +A++   EM  +G+ PN  TY+++     +
Sbjct: 498 FNGVEPDVQTYNILISGLI----NEGKFL-EAEELYKEMPHRGIVPNTITYSSMINGLCK 552

Query: 210 AQKVDEARGLLQQMKAKGFVPD 231
             ++DEA  +   M +K F PD
Sbjct: 553 QSRLDEATQMFDSMGSKSFSPD 574



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 67/153 (43%), Gaps = 8/153 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E++ +M   G+  N +    M + L K     EA Q+F  +  K   PDVV    ++  
Sbjct: 525 EELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLVSG 584

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y  AG+  + L +F  M   G+  +A TY  LI G     + N      A     EM+  
Sbjct: 585 YCKAGRVDDGLELFCEMGRRGIVADAITYITLIHGFRKVGNING-----ALDIFQEMISS 639

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           G+ P+  T  ++       +++  A  +L+ ++
Sbjct: 640 GVYPDTITIRSMLTVLWSKEELKRAVAMLEDLQ 672



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 72/160 (45%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           Q +  +M    +  N V    + +A  K+    EA +L+ ++  +G +P+ + + ++I+ 
Sbjct: 304 QRLLQEMLERKINPNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMIDG 363

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +    +   A  +F  M   G +P+ +T+  LI G   A     K + D  + L EM   
Sbjct: 364 FCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCGA-----KRIDDGTELLHEMTET 418

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G+  +  TY  +   F     ++ A  L QQM + G  PD
Sbjct: 419 GLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPD 458



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 8/139 (5%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L  +    EAL LF Q+      P+VV  T ++      G+  EA+ +  RM+  G
Sbjct: 153 LLHGLCVEDRVSEALDLFHQM----CRPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDG 208

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN  TY  ++ G+    D  + +  +  + + EM    ++PN   Y+A+ +   +  +
Sbjct: 209 LQPNQITYGTIVDGMCKIGDTVSAL--NLLRKMEEM--SHIKPNVVIYSAIIDGLWKDGR 264

Query: 213 VDEARGLLQQMKAKGFVPD 231
             +A  L  +M+ KG  PD
Sbjct: 265 HSDAHNLYTEMQEKGIFPD 283



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/147 (21%), Positives = 68/147 (46%), Gaps = 5/147 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L  +G   EA +L+ ++  +G +P+ + ++++I       +  EA ++F  M +  
Sbjct: 511 LISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKS 570

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            +P+  T+  L+ G   A       + D  +   EM  +G+  +A TY  +   F +   
Sbjct: 571 FSPDVVTFNTLVSGYCKAGR-----VDDGLELFCEMGRRGIVADAITYITLIHGFRKVGN 625

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEAL 239
           ++ A  + Q+M + G  PD   ++  L
Sbjct: 626 INGALDIFQEMISSGVYPDTITIRSML 652



 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 75/196 (38%), Gaps = 16/196 (8%)

Query: 32  QRSLSSSSDQPTKKYVNTKSKLPPPYDPFKKVVDEEPTDPRNLQEIFHKMRTEGLTNNAV 91
           QR L    ++     V T S L   Y   +K  + E        E++ +M   G+  N +
Sbjct: 304 QRLLQEMLERKINPNVVTYSALINAYVKERKFFEAE--------ELYDEMLPRGIIPNTI 355

Query: 92  ---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRM 148
               M D   K      A  +F  +  KG  PDV     +I+ Y  A +  +   +   M
Sbjct: 356 TYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEM 415

Query: 149 LASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFV 208
             +G+  +  TY  LI G     D NA     A     +M+  G+ P+  T   + +   
Sbjct: 416 TETGLVADTTTYNTLIHGFCLVGDLNA-----ALDLSQQMISSGVCPDIVTCNTLLDGLC 470

Query: 209 RAQKVDEARGLLQQMK 224
              K+ +A  + + M+
Sbjct: 471 DNGKLKDALEMFKAMQ 486



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 12/154 (7%)

Query: 88  NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMR 147
           N  +K F + SK      AL  F +I   G  PDVV  + ++       +  EAL +F +
Sbjct: 116 NILIKCFCSCSKLPF---ALSTFGKITKLGFQPDVVTFSTLLHGLCVEDRVSEALDLFHQ 172

Query: 148 MLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAF 207
           M      PN  T+  L+ GL        +++ +A   L  MV  G++PN  TY  + +  
Sbjct: 173 M----CRPNVVTFTTLMNGLCR----EGRVV-EAVALLDRMVEDGLQPNQITYGTIVDGM 223

Query: 208 VRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
            +      A  LL++M+    +     +  A+ID
Sbjct: 224 CKIGDTVSALNLLRKMEEMSHIKPNVVIYSAIID 257



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 56/127 (44%), Gaps = 9/127 (7%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
            + L+ +++ K    DV +   +I+ + S  +   AL  F ++   G  P+  T++ L+ 
Sbjct: 96  VISLYQKMERKQIPCDVYSFNILIKCFCSCSKLPFALSTFGKITKLGFQPDVVTFSTLLH 155

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           GL            D     +++  +  RPN  T+T +     R  +V EA  LL +M  
Sbjct: 156 GLCVE---------DRVSEALDLFHQMCRPNVVTFTTLMNGLCREGRVVEAVALLDRMVE 206

Query: 226 KGFVPDE 232
            G  P++
Sbjct: 207 DGLQPNQ 213


>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
 gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
          Length = 600

 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 87/195 (44%), Gaps = 42/195 (21%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F  +   GL  +A+      D L K G   +AL +   + +KG +PDVV+H AVI   
Sbjct: 314 ELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGL 373

Query: 133 AS-----------------------------------AGQGKEALRVFMRMLASGVAPNA 157
                                                AG+ K+A+  F  ML  GV P  
Sbjct: 374 CKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTV 433

Query: 158 YTYAVLIKGLAAA-ADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
            TY +L+ GL  A  +G  K   +A      M+ KG  P+  TY+A+ +   +A K+D+A
Sbjct: 434 VTYNILVDGLCKARQEGRIK---EAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDA 490

Query: 217 RGLLQQMKAKGFVPD 231
           R LL  M+AKG +P+
Sbjct: 491 RRLLGAMEAKGCIPN 505



 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/159 (33%), Positives = 78/159 (49%), Gaps = 11/159 (6%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSK---DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           F +M   G+    V    + D L K   +G   EA+ LF  + +KG +PDVV ++A+I+ 
Sbjct: 421 FKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDG 480

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              AG+  +A R+   M A G  PN YTY  LI GL     G  K+  +A +  + MV K
Sbjct: 481 LGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLC----GLDKV-DEALELFVAMVEK 535

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           G  P+  TY  +  A  + + VD+A  L       G VP
Sbjct: 536 GCVPDTITYGTIISALCKQEMVDKALALFDGSLEAGVVP 574



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 75/160 (46%), Gaps = 11/160 (6%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           Q +F  MR  G   N +    +   L   G   +A  L+ ++   G+ PDVV +  ++  
Sbjct: 70  QTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHG 129

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +   G+  EAL++F   +  G  P+  TY  LI G   A       L +AQ+ L  MV +
Sbjct: 130 FCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADK-----LDEAQRILQRMVSE 184

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            + P+  TY ++     +  +VDEAR L+     KGF P+
Sbjct: 185 SLVPDVVTYNSLVNGLCKNGRVDEARMLIVD---KGFSPN 221



 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 77/161 (47%), Gaps = 12/161 (7%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           Q ++ +M   G + + V    +     K G   EAL++F     +G +PDVV + A+I  
Sbjct: 105 QALYERMIKAGYSPDVVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALING 164

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +  A +  EA R+  RM++  + P+  TY  L+ GL           G   +  M +V K
Sbjct: 165 FCKADKLDEAQRILQRMVSESLVPDVVTYNSLVNGLCKN--------GRVDEARMLIVDK 216

Query: 192 GMRPNAGTYTAVFEAFVRA-QKVDEARGLLQQMKAKGFVPD 231
           G  PN  TY+ +     R  ++++ AR LL++M   G  PD
Sbjct: 217 GFSPNVITYSTLISGLCRELRRLESARQLLEKMVLNGCKPD 257



 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 78/162 (48%), Gaps = 13/162 (8%)

Query: 77  IFHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +   M  +G + NA+  F+ L     + G   +A+  F ++  +G  P VV +  +++  
Sbjct: 385 LLSGMEAKGCSPNAIS-FNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGL 443

Query: 133 ASA---GQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
             A   G+ KEA+ +F  M+  G  P+  TY+ LI GL     G A  L DA++ L  M 
Sbjct: 444 CKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGL-----GKAGKLDDARRLLGAME 498

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            KG  PN  TY ++        KVDEA  L   M  KG VPD
Sbjct: 499 AKGCIPNVYTYNSLISGLCGLDKVDEALELFVAMVEKGCVPD 540



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 79/160 (49%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +++  KM   G   + V    +   L+++    EAL+LF  +  +G+ P+V  +  +I+ 
Sbjct: 243 RQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDG 302

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
                +  EA  +F  ++  G+ P+A TY V I GL  A       + DA   L +M  K
Sbjct: 303 LLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGR-----VEDALLMLKDMDEK 357

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G  P+  ++ AV     + ++VDEA  LL  M+AKG  P+
Sbjct: 358 GCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPN 397



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 66/127 (51%), Gaps = 5/127 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +A  +F  ++  G  P+ + + A++    + G+  +A  ++ RM+ +G +P+  TY  L+
Sbjct: 68  DAQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLL 127

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            G           L +A K     V +G  P+  TY A+   F +A K+DEA+ +LQ+M 
Sbjct: 128 HGFCKVGK-----LDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMV 182

Query: 225 AKGFVPD 231
           ++  VPD
Sbjct: 183 SESLVPD 189



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 64/128 (50%), Gaps = 5/128 (3%)

Query: 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
             A QL  ++   G  PD+V++ A+I   A      EAL++F  +L  G  P   TY +L
Sbjct: 240 ESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNIL 299

Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           I GL      N     +A +    +V  G+ P+A TYT   +   +A +V++A  +L+ M
Sbjct: 300 IDGLLKEDRVN-----EAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDM 354

Query: 224 KAKGFVPD 231
             KG VPD
Sbjct: 355 DEKGCVPD 362



 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 36/67 (53%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EAL+LF  + +KG +PD + +  +I A        +AL +F   L +GV P +  Y  LI
Sbjct: 524 EALELFVAMVEKGCVPDTITYGTIISALCKQEMVDKALALFDGSLEAGVVPTSGMYFSLI 583

Query: 165 KGLAAAA 171
            GL A A
Sbjct: 584 DGLCAVA 590



 Score = 45.8 bits (107), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 6/114 (5%)

Query: 118 HMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKI 177
           + PD      ++ +   +G+ ++A R   ++L  G+  +  T+ + I GL  A+      
Sbjct: 12  YSPDAYTVGILLRSLLKSGKIEKAHRFVEQLLVKGLC-DISTFNIYISGLCRASR----- 65

Query: 178 LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +GDAQ     M   G  PN  TY A+        ++ +A+ L ++M   G+ PD
Sbjct: 66  IGDAQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPD 119


>gi|451798817|gb|AGF69112.1| PPR [Raphanus sativus]
          Length = 479

 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 82/153 (53%), Gaps = 8/153 (5%)

Query: 72  RNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           R ++E+ H ++ + +  +A+   D L KDG   +A  LF +++DKG  PD+V ++ +I  
Sbjct: 140 RKMEELSH-IKPDVVIYSAI--IDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMING 196

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           + S+G+  EA R+   ML   ++P+  T++ LI  L    D N+     AQ  L EM+  
Sbjct: 197 FCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNS-----AQDLLQEMISS 251

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           G+ PN  T   + +    + K+ +A  + + M+
Sbjct: 252 GVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQ 284



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 86/159 (54%), Gaps = 9/159 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM-PDVVAHTAVIEAY 132
           +  +M  +GL  N +    + D + K G T  AL L  ++++  H+ PDVV ++A+I+  
Sbjct: 103 LLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGL 162

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+  +A  +F+ M   G+ P+  TY+ +I G  ++   +     +AQ+ L EM+ + 
Sbjct: 163 WKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWS-----EAQRLLQEMLVRK 217

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + P+  T++ +  A V+   ++ A+ LLQ+M + G  P+
Sbjct: 218 ISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPN 256



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 7/157 (4%)

Query: 76  EIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASA 135
           ++FH+M    +      M + L ++G   EA+ L  ++ + G  P+ + +  +++     
Sbjct: 71  DLFHQMCKPNVVTFTTLM-NGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKM 129

Query: 136 GQGKEALRVFMRMLA-SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
           G    AL +  +M   S + P+   Y+ +I GL    DG      DAQ   +EM  KG+ 
Sbjct: 130 GDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWK--DGRHT---DAQNLFIEMQDKGIF 184

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           P+  TY+ +   F  + K  EA+ LLQ+M  +   PD
Sbjct: 185 PDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPD 221



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 81/171 (47%), Gaps = 19/171 (11%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           Q +  +M    ++ + V    + +AL K+G  + A  L  ++   G  P+VV    +++ 
Sbjct: 207 QRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDG 266

Query: 132 YASAGQGKEALRVFMRMLAS-----------GVAPNAYTYAVLIKGLAAAADGNAKILGD 180
              +G+ K+AL +F  M  S           GV P+  TY +LI GL        K L +
Sbjct: 267 LCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLI----NEGKFL-E 321

Query: 181 AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           A++   EM  +G+ P+  TY+++     +  ++DEA  +   M +K F P+
Sbjct: 322 AEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPN 372



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 68/153 (44%), Gaps = 8/153 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E++ +M   G+  + V    M + L K     EA Q+F  +  K   P++V    +I  
Sbjct: 323 EELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITG 382

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y  AG   + L +F  M   G+  NA TY  LI+G     + N  +         EM+  
Sbjct: 383 YCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSL-----DIFQEMISS 437

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           G+ P+  T   +       +++ +A  +L++++
Sbjct: 438 GVYPDTITIRNMLTGLWSKEELKKALAMLEELQ 470



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 69/147 (46%), Gaps = 5/147 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L  +G   EA +L+ ++  +G +PD V ++++I       +  EA ++F  M +  
Sbjct: 309 LISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKS 368

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            +PN  T+  LI G   A      ++ D  +   EM  +G+  NA TY  +   F +   
Sbjct: 369 FSPNIVTFNTLITGYCKAG-----MVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGN 423

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEAL 239
           ++ +  + Q+M + G  PD   ++  L
Sbjct: 424 INGSLDIFQEMISSGVYPDTITIRNML 450



 Score = 45.8 bits (107), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 10/122 (8%)

Query: 112 QIKDKGHMP-DVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAA 170
            IK    +P D+ +   +I+ + S  +   AL  F ++   G  P   T+  L+ GL   
Sbjct: 4   NIKHGLQIPCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVE 63

Query: 171 ADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
                    D     +++  +  +PN  T+T +     R  +V EA  LL +M   G  P
Sbjct: 64  ---------DRVSEALDLFHQMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQP 114

Query: 231 DE 232
           ++
Sbjct: 115 NQ 116


>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
 gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
          Length = 457

 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 81/170 (47%), Gaps = 8/170 (4%)

Query: 74  LQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           +Q +F  M  +G   N      + D   K G   EA +LF +++  G  PDVV++  +I 
Sbjct: 211 VQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIR 270

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
              S G+  EA R+   M+ SGV P+  +Y +LI G + +       L  A K   E+  
Sbjct: 271 GMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSG-----ALDHAIKLFYEIPK 325

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
            G+ P+A +Y+ + +   RA KV  A  + + M A G  PD   V   +I
Sbjct: 326 SGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVI 375



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +F  M  +G + N      +   L +     EA +L  ++ D GH P+VV + +++  
Sbjct: 72  RSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSG 131

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G+ KEA+ +F RM+  G  P+   Y VLI G +   D     +G+A +   EM+ K
Sbjct: 132 LCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGD-----MGEAYRLFEEMLEK 186

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G  P   TY ++   F R  +    + L + M  +G VP+
Sbjct: 187 GCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPN 226



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+ ++M   G   N V    +   L K G   EA+ LF+++  +G  PD V +  +I+ +
Sbjct: 108 ELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGF 167

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           +  G   EA R+F  ML  G  P  +TY  L+ G +   +      G  Q    +M+ +G
Sbjct: 168 SKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGE-----FGRVQSLFKDMLRQG 222

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             PN  T+  + + F +   + EA  L  +M++ G  PD
Sbjct: 223 CVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPD 261



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 71/149 (47%), Gaps = 6/149 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L+K G        +  +   G +P+   +  ++ +   A + +EA  VF  M A G
Sbjct: 23  LLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQG 82

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            +PN ++Y++LI GL        + + +A + L EM+  G +PN  TY ++     +  K
Sbjct: 83  CSPNVFSYSILIAGLC-----RGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGK 137

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALID 241
           + EA  L  +M  +G  PD   V   LID
Sbjct: 138 LKEAVDLFSRMVYRGCPPD-GVVYNVLID 165



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 8/172 (4%)

Query: 71  PRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P   Q +  +M   G+  + V    + D  SK G    A++LF +I   G  PD  +++ 
Sbjct: 278 PHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYST 337

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           +I+    AG+   A  VF  M+A+G AP+A     L+ GL        + L ++ +    
Sbjct: 338 IIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLC-----RGERLTESCELFQA 392

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
           MV     P    Y  +     +A++ D+   +  ++  +GF PD +  K  L
Sbjct: 393 MVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTERGFSPDVEISKVIL 444



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/158 (22%), Positives = 72/158 (45%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M  +G          +    S+ G       LF  +  +G +P++     +++ + 
Sbjct: 179 LFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFC 238

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G   EA R+F+ M + G  P+  +Y  LI+G+ +    +     +AQ+ L EM+  G+
Sbjct: 239 KMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPH-----EAQRLLREMIRSGV 293

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            P+  +Y  + + + ++  +D A  L  ++   G  PD
Sbjct: 294 GPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPD 331



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 5/109 (4%)

Query: 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQ 182
           +++  ++E  A +G+       +  MLA+G  PN YTY  L++ L       A+   +A+
Sbjct: 18  LSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLC-----QAQRFEEAR 72

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
                M  +G  PN  +Y+ +     R QKVDEA  LL +M   G  P+
Sbjct: 73  SVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPN 121


>gi|255548471|ref|XP_002515292.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545772|gb|EEF47276.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 72/127 (56%), Gaps = 5/127 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA  ++ ++ DKG  PD+VAH  ++E    + Q  +A+++FM M A G +P+  +Y +LI
Sbjct: 250 EAGSVWNEMIDKGFKPDIVAHNIMLEGLLRSKQRSDAIKLFMVMKAKGPSPDVRSYTILI 309

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           + L   +      + +A +Y  EM+  G +P+A  YT +   F   +++D    LL++MK
Sbjct: 310 RYLCRQSK-----MEEAVEYFQEMIDSGCKPDAAVYTCLITGFGNRKRMDMVYDLLKEMK 364

Query: 225 AKGFVPD 231
            +G  PD
Sbjct: 365 EEGCPPD 371



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 79/165 (47%), Gaps = 11/165 (6%)

Query: 72  RNLQE---IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAH 125
           +NL E   ++++M  +G   + V    M + L +     +A++LF  +K KG  PDV ++
Sbjct: 246 KNLMEAGSVWNEMIDKGFKPDIVAHNIMLEGLLRSKQRSDAIKLFMVMKAKGPSPDVRSY 305

Query: 126 TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185
           T +I       + +EA+  F  M+ SG  P+A  Y  LI G      GN K +      L
Sbjct: 306 TILIRYLCRQSKMEEAVEYFQEMIDSGCKPDAAVYTCLITGF-----GNRKRMDMVYDLL 360

Query: 186 MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
            EM  +G  P+  TY A+ +   R +  D+A  + ++M   G  P
Sbjct: 361 KEMKEEGCPPDGLTYNALIKLMTRLKMPDDAARIYKKMTQSGIEP 405



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 61/130 (46%), Gaps = 6/130 (4%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +A+ +F  +K   +   V     ++++   A  GKEA  +F   L     PN  TY VL+
Sbjct: 181 KAVAMFELMKKYNYKVGVETINHLLDSLGRAKLGKEAQALF-ENLKGRFTPNLRTYTVLL 239

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            G         K L +A     EM+ KG +P+   +  + E  +R+++  +A  L   MK
Sbjct: 240 NGWC-----KVKNLMEAGSVWNEMIDKGFKPDIVAHNIMLEGLLRSKQRSDAIKLFMVMK 294

Query: 225 AKGFVPDEKA 234
           AKG  PD ++
Sbjct: 295 AKGPSPDVRS 304



 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 5/119 (4%)

Query: 109 LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
           L  ++K++G  PD + + A+I+         +A R++ +M  SG+ P  +TY +++K   
Sbjct: 359 LLKEMKEEGCPPDGLTYNALIKLMTRLKMPDDAARIYKKMTQSGIEPTIHTYNMIMKSYF 418

Query: 169 AAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
              +     +G A     EM  KG  P+  +YT +    +   +  EA   L++M  KG
Sbjct: 419 QTRNYE---MGRA--VWDEMSRKGFCPDDNSYTVLIGGLISQGRSGEACKYLEEMLEKG 472



 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 7/144 (4%)

Query: 84  EGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALR 143
           +GLT NA  +   +++  +  +A +++ ++   G  P +  +  ++++Y      +    
Sbjct: 371 DGLTYNA--LIKLMTRLKMPDDAARIYKKMTQSGIEPTIHTYNMIMKSYFQTRNYEMGRA 428

Query: 144 VFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAV 203
           V+  M   G  P+  +Y VLI GL +         G+A KYL EM+ KGM+     Y   
Sbjct: 429 VWDEMSRKGFCPDDNSYTVLIGGLISQGRS-----GEACKYLEEMLEKGMKAPQLDYNKF 483

Query: 204 FEAFVRAQKVDEARGLLQQMKAKG 227
                R    D    L Q++K  G
Sbjct: 484 GADLSRGGNPDILEELAQRLKFSG 507


>gi|357502217|ref|XP_003621397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496412|gb|AES77615.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 550

 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 87/168 (51%), Gaps = 9/168 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +FH+M  + +  +      + DAL KDG    A  + A +  +G +PDVV ++++++ Y 
Sbjct: 256 LFHEMVLKNINPDVYTFSILVDALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYC 315

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
              +  +A  VF  M   GVAP+A++Y ++I GL     G  K++ +A     EM  KG+
Sbjct: 316 LVNEVNKAKHVFSTMSRLGVAPHAHSYNIMINGL-----GKIKMVDEALSLFKEMCCKGI 370

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
            P+  TY ++ +   +  ++  A  L+ +M   G +P +     +LID
Sbjct: 371 APDTVTYNSLIDGLCKLGRISYAWQLVDEMHNNG-IPADILTYNSLID 417



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 81/154 (52%), Gaps = 10/154 (6%)

Query: 82  RTEG-LTNNAVKMFD----ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           + EG L N  V M++    +L KD    +A QL++++  K   PDVV   ++I  +   G
Sbjct: 189 KIEGKLVNTDVVMYNIIINSLCKDKAVSDAYQLYSEMITKRISPDVVTFNSLILGFCVVG 248

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196
           Q KEA  +F  M+   + P+ YT+++L+  L    DGN   +  A+  L  M+ +G+ P+
Sbjct: 249 QLKEAFGLFHEMVLKNINPDVYTFSILVDAL--CKDGN---ITRAKNMLAVMMKQGVIPD 303

Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
             TY+++ + +    +V++A+ +   M   G  P
Sbjct: 304 VVTYSSLMDGYCLVNEVNKAKHVFSTMSRLGVAP 337



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 74/144 (51%), Gaps = 7/144 (4%)

Query: 86  LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVF 145
           LT N+  + D L K+    +A+ L  +IKD+G  P +  +  +I+     G+ K A  VF
Sbjct: 410 LTYNS--LIDVLCKNHHIDKAIALVKKIKDQGIQPSMYTYNILIDGLCKGGRLKNAQDVF 467

Query: 146 MRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFE 205
             +L  G + NA+TY ++I GL         +  +A+  L +M   G+ P+A TY  +  
Sbjct: 468 QDLLIKGYSVNAWTYNIMINGLCKEG-----LFNEAEVLLSKMENNGIIPDAVTYETIIR 522

Query: 206 AFVRAQKVDEARGLLQQMKAKGFV 229
           A  R  + ++A  LL++M  +G +
Sbjct: 523 ALFRKDENEKAEKLLREMIIRGLL 546



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 80/173 (46%), Gaps = 15/173 (8%)

Query: 62  KVVDEEPTDPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGH 118
           K+VDE  +       +F +M  +G+  + V    + D L K G    A QL  ++ + G 
Sbjct: 353 KMVDEALS-------LFKEMCCKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDEMHNNGI 405

Query: 119 MPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKIL 178
             D++ + ++I+         +A+ +  ++   G+ P+ YTY +LI GL          L
Sbjct: 406 PADILTYNSLIDVLCKNHHIDKAIALVKKIKDQGIQPSMYTYNILIDGLCKGGR-----L 460

Query: 179 GDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +AQ    +++ KG   NA TY  +     +    +EA  LL +M+  G +PD
Sbjct: 461 KNAQDVFQDLLIKGYSVNAWTYNIMINGLCKEGLFNEAEVLLSKMENNGIIPD 513



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K G T  ALQ+  +I+ K    DVV +  +I +        +A +++  M+   
Sbjct: 170 LINGLCKIGETRAALQMLKKIEGKLVNTDVVMYNIIINSLCKDKAVSDAYQLYSEMITKR 229

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           ++P+  T+  LI G           L +A     EMV K + P+  T++ + +A  +   
Sbjct: 230 ISPDVVTFNSLILGFCVVGQ-----LKEAFGLFHEMVLKNINPDVYTFSILVDALCKDGN 284

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +  A+ +L  M  +G +PD
Sbjct: 285 ITRAKNMLAVMMKQGVIPD 303



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 70/186 (37%), Gaps = 33/186 (17%)

Query: 79  HKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASA 135
           H++  +G+T   V    + +     G    A  +FA+I   G+ P  +    +I      
Sbjct: 83  HQLELKGITPTIVTFNILVNCYCHLGEMTFAFSIFAKILKLGYHPTTITFNTLINGICLN 142

Query: 136 GQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNA-------------------- 175
           G+ KEAL     ++A G   +  +Y  LI GL    +  A                    
Sbjct: 143 GKLKEALHFHDHVIALGFHLDQVSYRTLINGLCKIGETRAALQMLKKIEGKLVNTDVVMY 202

Query: 176 ----------KILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
                     K + DA +   EM+ K + P+  T+ ++   F    ++ EA GL  +M  
Sbjct: 203 NIIINSLCKDKAVSDAYQLYSEMITKRISPDVVTFNSLILGFCVVGQLKEAFGLFHEMVL 262

Query: 226 KGFVPD 231
           K   PD
Sbjct: 263 KNINPD 268



 Score = 43.9 bits (102), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 47/85 (55%), Gaps = 3/85 (3%)

Query: 72  RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           +N Q++F  +  +G + NA     M + L K+GL +EA  L +++++ G +PD V +  +
Sbjct: 461 KNAQDVFQDLLIKGYSVNAWTYNIMINGLCKEGLFNEAEVLLSKMENNGIIPDAVTYETI 520

Query: 129 IEAYASAGQGKEALRVFMRMLASGV 153
           I A     + ++A ++   M+  G+
Sbjct: 521 IRALFRKDENEKAEKLLREMIIRGL 545


>gi|413915966|gb|AFW55898.1| hypothetical protein ZEAMMB73_909442, partial [Zea mays]
          Length = 694

 Score = 84.0 bits (206), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 86/187 (45%), Gaps = 33/187 (17%)

Query: 78  FHKMRTEGLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F +M+  G+  N V +    DA  K+GL  EA++LFAQ++ +G MP+   +T++++    
Sbjct: 292 FGEMKRLGVMANVVTLSTFVDAFCKEGLVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCK 351

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA-----AAADGNAKIL----------- 178
           AG+  +A+ +   M+  G+ PN  TY V++ GL      A AD    ++           
Sbjct: 352 AGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAVADDVLSLMERAGVKANELL 411

Query: 179 --------------GDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
                           A   L EM  KGM  +   Y  +     + QK+DEA+ LL +M 
Sbjct: 412 YTTLIHGHFMNKNSERALDLLNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKMD 471

Query: 225 AKGFVPD 231
             G  P+
Sbjct: 472 DCGLRPN 478



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 76/156 (48%), Gaps = 8/156 (5%)

Query: 80  KMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           +MR  G   + V    + +  SK G   +A   F ++K  G M +VV  +  ++A+   G
Sbjct: 259 EMRKSGCAADVVTYNALINCFSKFGWIEKAYSYFGEMKRLGVMANVVTLSTFVDAFCKEG 318

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196
             +EA+++F +M   G+ PN +TY  L+ G   A       L DA   L EMV +G+ PN
Sbjct: 319 LVREAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGR-----LDDAIVLLDEMVHQGLVPN 373

Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
             TYT + +   +  KV  A  +L  M+  G   +E
Sbjct: 374 VVTYTVMVDGLCKEGKVAVADDVLSLMERAGVKANE 409



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 79/194 (40%), Gaps = 35/194 (18%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + + HKM   GL  N V    + DA  K G   EA+ L  +I D G  P+VV + A+I+ 
Sbjct: 464 KSLLHKMDDCGLRPNTVIYTTIMDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDG 523

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA----------------------- 168
              AG   EA+  F +M   G+ PN   Y  LI G                         
Sbjct: 524 LCKAGSIYEAISHFDKMRELGLDPNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLD 583

Query: 169 -----AAADGNAKILGDAQKYLM---EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
                +  DG+ K  GD Q       +M+  G++ +   YT     F     + EARG+L
Sbjct: 584 KVVYTSLIDGHMK-QGDLQGAFALKAKMIETGLQLDLYCYTCFISGFCNMNMMQEARGVL 642

Query: 221 QQMKAKGFVPDEKA 234
            +M   G  PD+ A
Sbjct: 643 SEMIGTGITPDKTA 656



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 70/137 (51%), Gaps = 6/137 (4%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA  L  ++ D G  P+ V +T +++A+  AG+  EA+ +  ++  SG+ PN  TY  LI
Sbjct: 462 EAKSLLHKMDDCGLRPNTVIYTTIMDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALI 521

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            GL  A       + +A  +  +M   G+ PN   YT + + F +   + +A  L+ +M 
Sbjct: 522 DGLCKAGS-----IYEAISHFDKMRELGLDPNVQVYTTLIDGFCKIGSLSKAVHLMNEMV 576

Query: 225 AKGFVPDEKAVKEALID 241
            KG   D K V  +LID
Sbjct: 577 DKGMSLD-KVVYTSLID 592



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 75/169 (44%), Gaps = 30/169 (17%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K G   EA  LF ++K  G  PDVV + ++I+ Y   G+ +E   +   M  SG
Sbjct: 205 VIDFLCKQGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGELEEVELLVSEMRKSG 264

Query: 153 VAPNAYTYAVLIKGL--------AAAADGNAKILG----------------------DAQ 182
            A +  TY  LI           A +  G  K LG                      +A 
Sbjct: 265 CAADVVTYNALINCFSKFGWIEKAYSYFGEMKRLGVMANVVTLSTFVDAFCKEGLVREAM 324

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           K   +M  +GM PN  TYT++ +   +A ++D+A  LL +M  +G VP+
Sbjct: 325 KLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPN 373



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 72/151 (47%), Gaps = 8/151 (5%)

Query: 78  FHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F KMR  GL  N      + D   K G   +A+ L  ++ DKG   D V +T++I+ +  
Sbjct: 537 FDKMRELGLDPNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLIDGHMK 596

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            G  + A  +  +M+ +G+  + Y Y   I G       N  ++ +A+  L EM+G G+ 
Sbjct: 597 QGDLQGAFALKAKMIETGLQLDLYCYTCFISGFC-----NMNMMQEARGVLSEMIGTGIT 651

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           P+   Y  +   + +   ++EA  L  +M++
Sbjct: 652 PDKTAYNCLIRKYQKLGNMEEASSLQNEMES 682



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 82/203 (40%), Gaps = 34/203 (16%)

Query: 72  RNLQEIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R   ++F +MR  G+  N      + D   K G   +A+ L  ++  +G +P+VV +T +
Sbjct: 321 REAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVM 380

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKG---------------------- 166
           ++     G+   A  V   M  +GV  N   Y  LI G                      
Sbjct: 381 VDGLCKEGKVAVADDVLSLMERAGVKANELLYTTLIHGHFMNKNSERALDLLNEMKNKGM 440

Query: 167 ------LAAAADGNAKI--LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218
                       G  K+  L +A+  L +M   G+RPN   YT + +AF +A K  EA  
Sbjct: 441 ELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDAFFKAGKESEAVA 500

Query: 219 LLQQMKAKGFVPDEKAVKEALID 241
           LL ++   G  P+      ALID
Sbjct: 501 LLHKIPDSGLQPN-VVTYCALID 522



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 58/143 (40%), Gaps = 30/143 (20%)

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL------------ 167
           P+V     VI+     G+  EA  +F+RM A G +P+  TY  LI G             
Sbjct: 197 PNVFTFNIVIDFLCKQGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGELEEVELL 256

Query: 168 -------AAAAD---GNAKI--------LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
                    AAD    NA I        +  A  Y  EM   G+  N  T +   +AF +
Sbjct: 257 VSEMRKSGCAADVVTYNALINCFSKFGWIEKAYSYFGEMKRLGVMANVVTLSTFVDAFCK 316

Query: 210 AQKVDEARGLLQQMKAKGFVPDE 232
              V EA  L  QM+ +G +P+E
Sbjct: 317 EGLVREAMKLFAQMRVRGMMPNE 339


>gi|451798815|gb|AGF69111.1| PPR [Raphanus sativus]
          Length = 479

 Score = 84.0 bits (206), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 82/153 (53%), Gaps = 8/153 (5%)

Query: 72  RNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           R ++E+ H ++ + +  +A+   D L KDG   +A  LF +++DKG  PD+V ++ +I  
Sbjct: 140 RKMEELSH-IKPDVVIYSAI--IDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMING 196

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           + S+G+  EA R+   ML   ++P+  T++ LI  L    D N+     AQ  L EM+  
Sbjct: 197 FCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNS-----AQDLLQEMISS 251

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           G+ PN  T   + +    + K+ +A  + + M+
Sbjct: 252 GVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQ 284



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 86/159 (54%), Gaps = 9/159 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM-PDVVAHTAVIEAY 132
           +  +M  +GL  N +    + D + K G T  AL L  ++++  H+ PDVV ++A+I+  
Sbjct: 103 LLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGL 162

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+  +A  +F+ M   G+ P+  TY+ +I G  ++   +     +AQ+ L EM+ + 
Sbjct: 163 WKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWS-----EAQRLLQEMLVRK 217

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + P+  T++ +  A V+   ++ A+ LLQ+M + G  P+
Sbjct: 218 ISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPN 256



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 7/157 (4%)

Query: 76  EIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASA 135
           ++FH+M    +      M + L ++G   EA+ L  ++ + G  P+ + +  +++     
Sbjct: 71  DLFHQMCKPNVVTFTTLM-NGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKM 129

Query: 136 GQGKEALRVFMRMLA-SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
           G    AL +  +M   S + P+   Y+ +I GL    DG      DAQ   +EM  KG+ 
Sbjct: 130 GDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWK--DGRHT---DAQNLFIEMQDKGIF 184

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           P+  TY+ +   F  + K  EA+ LLQ+M  +   PD
Sbjct: 185 PDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPD 221



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 81/171 (47%), Gaps = 19/171 (11%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           Q +  +M    ++ + V    + +AL K+G  + A  L  ++   G  P+VV    +++ 
Sbjct: 207 QRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDG 266

Query: 132 YASAGQGKEALRVFMRMLAS-----------GVAPNAYTYAVLIKGLAAAADGNAKILGD 180
              +G+ K+AL +F  M  S           GV P+  TY +LI GL        K L +
Sbjct: 267 LCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLI----NEGKFL-E 321

Query: 181 AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           A++   EM  +G+ P+  TY+++     +  ++DEA  +   M +K F P+
Sbjct: 322 AEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPN 372



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 8/153 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E++ +M   G+  + V    M + L K     EA Q+F  +  K   P++V    +I  
Sbjct: 323 EELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITG 382

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y  AG   + L +F  M   G+  NA TY  LI+G     + N  +         EM+  
Sbjct: 383 YCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSL-----DIFQEMISS 437

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           G+ P+  T   +       +++  A  +L++++
Sbjct: 438 GVYPDTITIRNMLTGLWSKEELKRALAMLEELQ 470



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 69/147 (46%), Gaps = 5/147 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L  +G   EA +L+ ++  +G +PD V ++++I       +  EA ++F  M +  
Sbjct: 309 LISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKS 368

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            +PN  T+  LI G   A      ++ D  +   EM  +G+  NA TY  +   F +   
Sbjct: 369 FSPNIVTFNTLITGYCKAG-----MVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGN 423

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEAL 239
           ++ +  + Q+M + G  PD   ++  L
Sbjct: 424 INGSLDIFQEMISSGVYPDTITIRNML 450



 Score = 45.8 bits (107), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 10/122 (8%)

Query: 112 QIKDKGHMP-DVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAA 170
            IK    +P D+ +   +I+ + S  +   AL  F ++   G  P   T+  L+ GL   
Sbjct: 4   NIKHGLQIPCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVE 63

Query: 171 ADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
                    D     +++  +  +PN  T+T +     R  +V EA  LL +M   G  P
Sbjct: 64  ---------DRVSEALDLFHQMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQP 114

Query: 231 DE 232
           ++
Sbjct: 115 NQ 116


>gi|255660846|gb|ACU25592.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
          Length = 418

 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 112/237 (47%), Gaps = 15/237 (6%)

Query: 2   AATAILRWLLHSPSPKRS-LRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPF 60
           +A+A+   +L +   +RS + + +  +NA L+      + +  +  +  + KL  P+D  
Sbjct: 47  SASAVFAAILETKGTQRSDIYVFSGLINAYLESGFVRDAIECFR--LTREHKLRVPFDTC 104

Query: 61  KKVVDEEPTDPRNLQEI--FHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIK 114
           +KV+ E     +  + +  F+K   E     ++  F+ L     K+G    A  +F  I 
Sbjct: 105 RKVL-EHLMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEIWIAQSVFDSIT 163

Query: 115 DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174
             G  P VV+   ++  Y   G   +  ++   M ASGV P+ YTY+VLI GL   +  N
Sbjct: 164 KWGLRPSVVSFNTLMNGYIRLGDLDQGFKLKNAMHASGVQPDVYTYSVLINGLCKESKMN 223

Query: 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
                +A     EM+ KG+ PN  T+T + +   +  KVD A    +QM ++ F+PD
Sbjct: 224 -----EANDLFNEMLDKGLVPNGVTFTTLIDGHCKNGKVDSAMETYKQMLSQCFLPD 275



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/189 (26%), Positives = 84/189 (44%), Gaps = 33/189 (17%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            ++F++M  +GL  N V    + D   K+G    A++ + Q+  +  +PD++ +  +I  
Sbjct: 226 NDLFNEMLDKGLVPNGVTFTTLIDGHCKNGKVDSAMETYKQMLSQCFLPDLITYNTLIYG 285

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN----------------- 174
               G  K+A  +   M   G+ P+  TY  LI G     D +                 
Sbjct: 286 LCKKGDLKQAQDLLDEMRMKGLKPDKITYTTLIDGNCKEGDLDSAFELRETMVKESIRLD 345

Query: 175 -----AKILG--------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221
                A I G        DA+K L EM+  G++P+ GTYT +   F + + V  A  LL+
Sbjct: 346 DVAYTALISGLCQEGRATDAEKMLREMLSVGLKPDNGTYTMIINEFCKKEDVKTAAKLLK 405

Query: 222 QMKAKGFVP 230
           +M+ +G VP
Sbjct: 406 EMQRQGHVP 414



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 70/142 (49%), Gaps = 5/142 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K+   +EA  LF ++ DKG +P+ V  T +I+ +   G+   A+  + +ML+  
Sbjct: 212 LINGLCKESKMNEANDLFNEMLDKGLVPNGVTFTTLIDGHCKNGKVDSAMETYKQMLSQC 271

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  TY  LI GL    D     L  AQ  L EM  KG++P+  TYT + +   +   
Sbjct: 272 FLPDLITYNTLIYGLCKKGD-----LKQAQDLLDEMRMKGLKPDKITYTTLIDGNCKEGD 326

Query: 213 VDEARGLLQQMKAKGFVPDEKA 234
           +D A  L + M  +    D+ A
Sbjct: 327 LDSAFELRETMVKESIRLDDVA 348



 Score = 46.2 bits (108), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 8/133 (6%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D +  Q++  +MR +GL  + +    + D   K+G    A +L   +  +    D VA+T
Sbjct: 291 DLKQAQDLLDEMRMKGLKPDKITYTTLIDGNCKEGDLDSAFELRETMVKESIRLDDVAYT 350

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
           A+I      G+  +A ++   ML+ G+ P+  TY ++I       D     +  A K L 
Sbjct: 351 ALISGLCQEGRATDAEKMLREMLSVGLKPDNGTYTMIINEFCKKED-----VKTAAKLLK 405

Query: 187 EMVGKGMRPNAGT 199
           EM  +G  P   T
Sbjct: 406 EMQRQGHVPCVVT 418


>gi|357444885|ref|XP_003592720.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481768|gb|AES62971.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 553

 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 75/142 (52%), Gaps = 5/142 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DA S  G+  +A  +F  ++   +MPD+ ++T ++ AY +A   + A + F R++  G
Sbjct: 356 LLDAFSISGMVEQARIVFKSMRRDKYMPDLCSYTTMLSAYVNAPDMEGAEKFFKRLIQDG 415

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN  TY  LIKG A A D    I    +KY  EM+G+G++ N    T + +A  +   
Sbjct: 416 FEPNVVTYGTLIKGYAKAND----IEKVMEKY-EEMLGRGIKANQTILTTIMDAHGKNGD 470

Query: 213 VDEARGLLQQMKAKGFVPDEKA 234
            D A    ++M   G +PD+KA
Sbjct: 471 FDSAVNWFKEMALNGLLPDQKA 492



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/201 (23%), Positives = 92/201 (45%), Gaps = 25/201 (12%)

Query: 51  SKLPPPYDPFKKVVDEEPTDPRNLQEIFHKM----RTEGLTNNAVKMFDALSKDGL---- 102
           +K     + F K++++E +  R  Q++F+ M    +  G    A + F  +++ G+    
Sbjct: 224 NKFKEAEEVFDKLLNDEKSPLRPDQKMFNMMIYMYKKSGSHEKARQTFALMAERGIKKAT 283

Query: 103 -THEAL-----------QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
            T+ +L            ++ Q++     PDVV++  +I AY  A + +EAL VF  ML 
Sbjct: 284 VTYNSLMSFETNYKEVSNIYDQMQRADLRPDVVSYALLINAYGKARREEEALAVFEEMLD 343

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
           +GV P    Y +L+   + +      ++  A+     M      P+  +YT +  A+V A
Sbjct: 344 AGVRPTRKAYNILLDAFSISG-----MVEQARIVFKSMRRDKYMPDLCSYTTMLSAYVNA 398

Query: 211 QKVDEARGLLQQMKAKGFVPD 231
             ++ A    +++   GF P+
Sbjct: 399 PDMEGAEKFFKRLIQDGFEPN 419



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 14/141 (9%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +  A  K G  + A ++   +   G+ P+VV+ TA++EAY   G+   A  +F RM   G
Sbjct: 146 LITAYGKLGDFNGAEKVLGLMNKNGYAPNVVSQTALMEAYGKGGRYNNAEAIFRRMQTFG 205

Query: 153 VAPNAYTYAVLIKGLA------AAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEA 206
             P+A+TY +++K          A +   K+L D +  L        RP+   +  +   
Sbjct: 206 PEPSAFTYQIILKTFVQGNKFKEAEEVFDKLLNDEKSPL--------RPDQKMFNMMIYM 257

Query: 207 FVRAQKVDEARGLLQQMKAKG 227
           + ++   ++AR     M  +G
Sbjct: 258 YKKSGSHEKARQTFALMAERG 278


>gi|255541015|ref|XP_002511572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550687|gb|EEF52174.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 735

 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 84/162 (51%), Gaps = 7/162 (4%)

Query: 77  IFHKMRTEGLTNNAVKMFDALS---KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           + + M ++G   NAV     +S   ++    EA +LF ++   G  P +     ++    
Sbjct: 168 LLNNMPSQGCELNAVVYCTVISGFYEENYQVEAYELFNKMLRLGIFPHIATFNKLMHILC 227

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA---AAADGNAKILGDAQKYLMEMVG 190
             G  +E  ++  ++L +GV PN +T+ + I+GL         N+K++ +A+ YL +MV 
Sbjct: 228 KKGHLQEGEKLLNKVLKNGVCPNLFTFNIFIQGLCRKGVLEGANSKVV-EAENYLHKMVN 286

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           KG+ P+  TY  +   + +  K+ +A  +L+  K KGFVPDE
Sbjct: 287 KGLEPDDFTYNTIIYGYSKVGKIQDASRILKDAKFKGFVPDE 328



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 80/161 (49%), Gaps = 12/161 (7%)

Query: 76  EIFHKMRTEGL-----TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           ++ + M  EG+     T N V   + L K G   +A  L      KG++PD+     +I+
Sbjct: 384 QLMNDMSKEGMSPDIWTYNLV--INGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLID 441

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
            Y    +   A+ +   M + GV P+  TY  ++ GL  AA    + + +  K +ME   
Sbjct: 442 GYCKRLKMDNAIGILDSMWSHGVTPDVITYNSILNGLCKAA--KPEDVMETFKMIME--- 496

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           KG  PN  TY  + E+  +A+KV EA  LL++++ +G +PD
Sbjct: 497 KGCLPNIITYNILIESLCKARKVTEALDLLEEIRNRGLIPD 537



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 9/164 (5%)

Query: 71  PRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P ++ E F  +  +G   N +    + ++L K     EAL L  +I+++G +PD V+   
Sbjct: 484 PEDVMETFKMIMEKGCLPNIITYNILIESLCKARKVTEALDLLEEIRNRGLIPDPVSFGT 543

Query: 128 VIEAYASAGQGKEALRVFMRMLASG-VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
           VI  + + G   EA ++F RM     +     TY ++I   +   D +      AQK   
Sbjct: 544 VISGFCNNGDLDEAYQLFRRMEQQYRICHTVATYNIMINAFSEKLDMDM-----AQKLFH 598

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           EM  KG  P++ TY  + + F +   V+     L +    GFVP
Sbjct: 599 EMGDKGCDPDSYTYRVMIDGFCKVGNVNSGYDFLLKEIEIGFVP 642



 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 72/162 (44%), Gaps = 12/162 (7%)

Query: 75  QEIFHKMRTEGL-----TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           +   HKM  +GL     T N +      SK G   +A ++    K KG +PD   + ++I
Sbjct: 278 ENYLHKMVNKGLEPDDFTYNTI--IYGYSKVGKIQDASRILKDAKFKGFVPDEFTYCSLI 335

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
                 G    AL +F   L  G+ P+   Y  LIKGL+        ++  A + + +M 
Sbjct: 336 IGVCQDGDIDHALALFEEALGKGLKPSIVLYNTLIKGLSQQG-----LVLKALQLMNDMS 390

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +GM P+  TY  V     +   V +A  LL    AKG++PD
Sbjct: 391 KEGMSPDIWTYNLVINGLCKMGCVSDANNLLNAAIAKGYLPD 432



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 79/181 (43%), Gaps = 14/181 (7%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           I   M + G+T + +    + + L K     + ++ F  I +KG +P+++ +  +IE+  
Sbjct: 455 ILDSMWSHGVTPDVITYNSILNGLCKAAKPEDVMETFKMIMEKGCLPNIITYNILIESLC 514

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG- 192
            A +  EAL +   +   G+ P+  ++  +I G     D     L +A +    M  +  
Sbjct: 515 KARKVTEALDLLEEIRNRGLIPDPVSFGTVISGFCNNGD-----LDEAYQLFRRMEQQYR 569

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVIN 252
           +     TY  +  AF     +D A+ L  +M  KG  PD    +  +ID    GF  V N
Sbjct: 570 ICHTVATYNIMINAFSEKLDMDMAQKLFHEMGDKGCDPDSYTYR-VMID----GFCKVGN 624

Query: 253 I 253
           +
Sbjct: 625 V 625



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 8/147 (5%)

Query: 84  EGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALR 143
           EG+  +A++ +    + G   EA+ +F ++      P + ++ A++      G   +A +
Sbjct: 76  EGVYVSAMRNY---GRKGKVQEAVDVFERMDFYNCEPSIFSYNAIMNILVEYGYFNQAHK 132

Query: 144 VFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAV 203
           V++RM   G+AP+  T+ + IK         A     A + L  M  +G   NA  Y  V
Sbjct: 133 VYLRMKHEGIAPDVCTFTIRIKSFCRTKRPLA-----ALRLLNNMPSQGCELNAVVYCTV 187

Query: 204 FEAFVRAQKVDEARGLLQQMKAKGFVP 230
              F       EA  L  +M   G  P
Sbjct: 188 ISGFYEENYQVEAYELFNKMLRLGIFP 214


>gi|15221300|ref|NP_177597.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169839|sp|Q9CA58.1|PP120_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g74580
 gi|12324819|gb|AAG52381.1|AC011765_33 hypothetical protein; 77097-79388 [Arabidopsis thaliana]
 gi|332197491|gb|AEE35612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 763

 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 70/139 (50%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K G   +A  L   +  KG+ PD+     +I  Y++  + + AL +   ML +G
Sbjct: 432 LVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNG 491

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V P+ YTY  L+ GL   +        D  +    MV KG  PN  T+  + E+  R +K
Sbjct: 492 VDPDVYTYNSLLNGLCKTSK-----FEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRK 546

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +DEA GLL++MK K   PD
Sbjct: 547 LDEALGLLEEMKNKSVNPD 565



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 82/169 (48%), Gaps = 9/169 (5%)

Query: 76  EIFHKMRTEGLT---NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F KM   G++   +   K+   L K G   E  +L  ++  +G +P++  +   I+  
Sbjct: 202 ELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGL 261

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+   A+R+   ++  G  P+  TY  LI GL      N+K   +A+ YL +MV +G
Sbjct: 262 CQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCK----NSK-FQEAEVYLGKMVNEG 316

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           + P++ TY  +   + +   V  A  ++      GFVPD+   + +LID
Sbjct: 317 LEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYR-SLID 364



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 8/155 (5%)

Query: 80  KMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           KM  EGL  ++     +     K G+   A ++       G +PD   + ++I+     G
Sbjct: 311 KMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEG 370

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196
           +   AL +F   L  G+ PN   Y  LIKGL+     N  ++ +A +   EM  KG+ P 
Sbjct: 371 ETNRALALFNEALGKGIKPNVILYNTLIKGLS-----NQGMILEAAQLANEMSEKGLIPE 425

Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             T+  +     +   V +A GL++ M +KG+ PD
Sbjct: 426 VQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPD 460



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 5/136 (3%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+    EA     ++ ++G  PD   +  +I  Y   G  + A R+    + +G  P
Sbjct: 295 GLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVP 354

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           + +TY  LI GL    + N      A     E +GKG++PN   Y  + +       + E
Sbjct: 355 DQFTYRSLIDGLCHEGETNR-----ALALFNEALGKGIKPNVILYNTLIKGLSNQGMILE 409

Query: 216 ARGLLQQMKAKGFVPD 231
           A  L  +M  KG +P+
Sbjct: 410 AAQLANEMSEKGLIPE 425



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 74/167 (44%), Gaps = 12/167 (7%)

Query: 72  RNLQE---IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVV-A 124
           R L E   +  +M+ + +  +AV    + D   K+G    A  LF ++++   +      
Sbjct: 545 RKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPT 604

Query: 125 HTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKY 184
           +  +I A+        A ++F  M+   + P+ YTY +++ G     + N        K+
Sbjct: 605 YNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNL-----GYKF 659

Query: 185 LMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           L+EM+  G  P+  T   V        +V EA G++ +M  KG VP+
Sbjct: 660 LLEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQKGLVPE 706



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 68/161 (42%), Gaps = 15/161 (9%)

Query: 74  LQEIFHKMR-------TEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           ++E+   MR        EG+   A+K +    + G   EA+ +F ++      P V ++ 
Sbjct: 59  MEEVLVDMRENVGNHMLEGVYVGAMKNY---GRKGKVQEAVNVFERMDFYDCEPTVFSYN 115

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
           A++     +G   +A +V+MRM   G+ P+ Y++ + +K     +  +A     A + L 
Sbjct: 116 AIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHA-----ALRLLN 170

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
            M  +G   N   Y  V   F       E   L  +M A G
Sbjct: 171 NMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASG 211



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 50/245 (20%), Positives = 89/245 (36%), Gaps = 42/245 (17%)

Query: 24  NTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKKVVDEEPTDPR--NLQEIFHKM 81
           N  VN   +    S +D   K  + +K   P  +  F  ++    T  +  N  EI   M
Sbjct: 430 NILVNGLCKMGCVSDADGLVKVMI-SKGYFPDIF-TFNILIHGYSTQLKMENALEILDVM 487

Query: 82  RTEGL-----TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
              G+     T N+  + + L K     + ++ +  + +KG  P++     ++E+     
Sbjct: 488 LDNGVDPDVYTYNS--LLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYR 545

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKI------------------- 177
           +  EAL +   M    V P+A T+  LI G     D +                      
Sbjct: 546 KLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTY 605

Query: 178 ------------LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
                       +  A+K   EMV + + P+  TY  + + F +   V+     L +M  
Sbjct: 606 NIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMME 665

Query: 226 KGFVP 230
            GF+P
Sbjct: 666 NGFIP 670


>gi|410109921|gb|AFV61040.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           filifolia]
          Length = 431

 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 112/237 (47%), Gaps = 15/237 (6%)

Query: 2   AATAILRWLLHSPSPKRS-LRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPF 60
           +A+A+   +L +   +RS + + +  +   L+      + +  +  +  ++KL  P+D  
Sbjct: 53  SASAVFAAILETKGTQRSDIYVFSGLITGYLESGFLRDAIECYR--LTRENKLCVPFDTC 110

Query: 61  KKVVDEEPTDPRNLQEI--FHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIK 114
           +KV+ E     +  + +  F++   E     ++  F+ L     KDG    A  +F  I 
Sbjct: 111 RKVL-EHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAIT 169

Query: 115 DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174
             G  P VV++  ++  Y   G   E  R+   MLASGV P+ YTY+VLI GL       
Sbjct: 170 KWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKENK-- 227

Query: 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              + DA K   EM+ K + PN  T+T + +   +  +VD A  + +QM ++  +PD
Sbjct: 228 ---MDDANKLFDEMLVKALVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPD 281



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 85/201 (42%), Gaps = 35/201 (17%)

Query: 63  VVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM 119
           +  E   D  N  ++F +M  + L  N V    + D   K+G    A++++ Q+  +  +
Sbjct: 222 LCKENKMDDAN--KLFDEMLVKALVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLL 279

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN----- 174
           PD++ +  +I      G  K+A  +   M   G+ P+  TY  LI G     D +     
Sbjct: 280 PDLITYNTLIYGLCKKGDLKQANDLIDEMSMKGLQPDKITYTTLIDGCCKEGDLDTAFEH 339

Query: 175 -----------------AKILG--------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
                            A I G        DA+K L EM+  G++P+A TYT +   F +
Sbjct: 340 RKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCK 399

Query: 210 AQKVDEARGLLQQMKAKGFVP 230
              V +   LL++M+  G VP
Sbjct: 400 KGDVWKGSKLLKEMQRDGHVP 420


>gi|225456753|ref|XP_002268934.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580 [Vitis vinifera]
 gi|297733985|emb|CBI15232.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score = 83.6 bits (205), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 47/139 (33%), Positives = 72/139 (51%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K G   +A  L      KGH+PDV     +I+ Y    +   A+ +  RM   G
Sbjct: 431 VINGLCKIGCVSDADNLVIDAIAKGHLPDVFTFNTLIDGYCKKLKLDNAIEIVDRMWNHG 490

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V+P+  TY  ++ GL  A  G  + +    K +ME   KG  PN  TY  + E+F +A+K
Sbjct: 491 VSPDVITYNSILNGLCKA--GKYEDVMGTFKLMME---KGCVPNIITYNILTESFCKARK 545

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V+EA  L+++M+ KG  PD
Sbjct: 546 VEEALNLIEEMQNKGLTPD 564



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 87/194 (44%), Gaps = 32/194 (16%)

Query: 71  PRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P   + + + M ++G  ++AV    +     ++    EA +LF ++   G  PD++A   
Sbjct: 162 PHAARRLLNNMPSQGCESSAVAYCTVIGGFYEENHRVEAHELFEEMLGLGICPDIMAFNK 221

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA---------DG----- 173
           +I      G  +E+ R+  ++L  GV+PN +T  + I+G    A         DG     
Sbjct: 222 LIHTLCRKGHVQESERLLNKVLKRGVSPNLFTVNIFIQGFCQRAMLNEAIRLLDGVGRGL 281

Query: 174 -------NAKILG--------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218
                  N  I G        +A+ YL +MV +G  P+  TY ++ + + +   +  A  
Sbjct: 282 TPDVITYNTLICGLCKNFKVVEAEHYLRKMVNEGYEPDGFTYNSIIDGYCKLGMMQNADQ 341

Query: 219 LLQQMKAKGFVPDE 232
           +L+    KGFVPDE
Sbjct: 342 ILRDGAFKGFVPDE 355



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 84/176 (47%), Gaps = 12/176 (6%)

Query: 63  VVDEEPTDPRNLQE---IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDK 116
           ++ E     R ++E   +  +M+ +GLT + V    +      +G    A QLF ++ ++
Sbjct: 535 ILTESFCKARKVEEALNLIEEMQNKGLTPDVVNFGTLMKGFCDNGDLDGAYQLFKRVDEQ 594

Query: 117 GHMPDVVA-HTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNA 175
                 +A +  +I A+A       A ++F +M  +G +P++YTY V+I G     + N+
Sbjct: 595 YKFSHTIATYNIMINAFAGKLNMNMAEKLFNKMCENGFSPDSYTYRVMIDGFCKTGNINS 654

Query: 176 KILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
                   +L+  + KG+ P+  T+  V       ++V EA G++  M  KG VP+
Sbjct: 655 -----GYSFLLVKIEKGLIPSLTTFGRVLNCLCLKRRVHEAVGIIHLMVHKGIVPE 705



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 70/141 (49%), Gaps = 5/141 (3%)

Query: 91  VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
             + + L +DG    A+ +F +  +KG  P++V    +++  +  G   +AL++   M  
Sbjct: 359 CSLINGLCQDGDIDRAINVFNEAMEKGLKPNLVLCNTLVKGLSQQGLILQALKLMNEMSE 418

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
           +G +P+ +TY ++I GL          + DA   +++ + KG  P+  T+  + + + + 
Sbjct: 419 NGCSPDIWTYNLVINGLCKIG-----CVSDADNLVIDAIAKGHLPDVFTFNTLIDGYCKK 473

Query: 211 QKVDEARGLLQQMKAKGFVPD 231
            K+D A  ++ +M   G  PD
Sbjct: 474 LKLDNAIEIVDRMWNHGVSPD 494



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 63/148 (42%), Gaps = 7/148 (4%)

Query: 84  EGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALR 143
           +G T N++   D   K G+   A Q+      KG +PD   + ++I      G    A+ 
Sbjct: 319 DGFTYNSI--IDGYCKLGMMQNADQILRDGAFKGFVPDESTYCSLINGLCQDGDIDRAIN 376

Query: 144 VFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAV 203
           VF   +  G+ PN      L+KGL+        ++  A K + EM   G  P+  TY  V
Sbjct: 377 VFNEAMEKGLKPNLVLCNTLVKGLSQQG-----LILQALKLMNEMSENGCSPDIWTYNLV 431

Query: 204 FEAFVRAQKVDEARGLLQQMKAKGFVPD 231
                +   V +A  L+    AKG +PD
Sbjct: 432 INGLCKIGCVSDADNLVIDAIAKGHLPD 459



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/225 (21%), Positives = 92/225 (40%), Gaps = 16/225 (7%)

Query: 24  NTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKKVVDEEPTDPR--NLQEIFHKM 81
           N  +N   +    S +D      +  K  LP  +  F  ++D      +  N  EI  +M
Sbjct: 429 NLVINGLCKIGCVSDADNLVIDAI-AKGHLPDVF-TFNTLIDGYCKKLKLDNAIEIVDRM 486

Query: 82  RTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQG 138
              G++ + +    + + L K G   + +  F  + +KG +P+++ +  + E++  A + 
Sbjct: 487 WNHGVSPDVITYNSILNGLCKAGKYEDVMGTFKLMMEKGCVPNIITYNILTESFCKARKV 546

Query: 139 KEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR--PN 196
           +EAL +   M   G+ P+   +  L+KG     D       D    L + V +  +    
Sbjct: 547 EEALNLIEEMQNKGLTPDVVNFGTLMKGFCDNGD------LDGAYQLFKRVDEQYKFSHT 600

Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
             TY  +  AF     ++ A  L  +M   GF PD    +  +ID
Sbjct: 601 IATYNIMINAFAGKLNMNMAEKLFNKMCENGFSPDSYTYR-VMID 644



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 5/133 (3%)

Query: 99  KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAY 158
           + G   EA+ +F ++      P V ++ A++          +A +V+MRM   G+ P+ Y
Sbjct: 88  RKGKIQEAVDVFERMDFFNCEPSVQSYNAIMNILVEYRYFDQAHKVYMRMRDKGIVPDVY 147

Query: 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218
           T+ + +K     +  +A     A++ L  M  +G   +A  Y  V   F       EA  
Sbjct: 148 TFTIRMKSFCRTSRPHA-----ARRLLNNMPSQGCESSAVAYCTVIGGFYEENHRVEAHE 202

Query: 219 LLQQMKAKGFVPD 231
           L ++M   G  PD
Sbjct: 203 LFEEMLGLGICPD 215


>gi|297832604|ref|XP_002884184.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330024|gb|EFH60443.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 829

 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 84/163 (51%), Gaps = 8/163 (4%)

Query: 72  RNLQEIFHKMRTEGLTNN---AVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R +  +  +MR++GL  +      +  A +++GL  EA   FA++K  G+ P  V + A+
Sbjct: 270 RKILGVLEEMRSKGLKFDEFTCSTVLSACAREGLLREAKDFFAELKSCGYEPGTVTYNAL 329

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           ++ +  AG   EAL V   M  +    ++ TY  L+   A A  G +K   +A   +  M
Sbjct: 330 LQVFGKAGVYTEALSVLKEMEENNCPADSVTYNELVAAYARA--GFSK---EAAVVIEMM 384

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             KG+ PNA TYT V +A+ +A K DEA  L   MK  G VP+
Sbjct: 385 TQKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPN 427



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 69/137 (50%), Gaps = 7/137 (5%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
           A ++ G + EA  +   +  KG MP+ + +T VI+AY  AG+  EAL++F  M  +G  P
Sbjct: 367 AYARAGFSKEAAVVIEMMTQKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVP 426

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           N  TY  ++  L   +  N  I     K L +M   G  PN  T+  +  A    + +D+
Sbjct: 427 NTCTYNAVLSMLGKKSRSNEMI-----KMLCDMKSNGCFPNRATWNTIL-ALCGNKGMDK 480

Query: 216 -ARGLLQQMKAKGFVPD 231
               + ++MK+ GF PD
Sbjct: 481 FVNRVFREMKSCGFEPD 497



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 82/189 (43%), Gaps = 12/189 (6%)

Query: 72  RNLQEIFHKMRTEG-----LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           R  ++ F ++++ G     +T NA  +     K G+  EAL +  ++++     D V + 
Sbjct: 305 REAKDFFAELKSCGYEPGTVTYNA--LLQVFGKAGVYTEALSVLKEMEENNCPADSVTYN 362

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
            ++ AYA AG  KEA  V   M   GV PNA TY  +I      A G A    +A K   
Sbjct: 363 ELVAAYARAGFSKEAAVVIEMMTQKGVMPNAITYTTVID-----AYGKAGKEDEALKLFY 417

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
            M   G  PN  TY AV     +  + +E   +L  MK+ G  P+       L     +G
Sbjct: 418 SMKEAGCVPNTCTYNAVLSMLGKKSRSNEMIKMLCDMKSNGCFPNRATWNTILALCGNKG 477

Query: 247 FRGVINILF 255
               +N +F
Sbjct: 478 MDKFVNRVF 486



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 73/163 (44%), Gaps = 8/163 (4%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           I   +  +GL  + V    + D   + G   +A ++   ++     PD+V++  VI+ + 
Sbjct: 660 ILQSIHEDGLNPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFC 719

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G  +EA+R+   M   G+ P  +TY   + G  A       + G+ +  +  M     
Sbjct: 720 RKGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMG-----MYGEIEDVIECMAKNDC 774

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK 236
           RPN  T+  V + + RA K  EA   + ++K      D+++++
Sbjct: 775 RPNELTFKMVVDGYCRAGKYSEAMDFVSKIKTFDPCFDDQSIQ 817



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 4/125 (3%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A +L  +I  + +M DV A+T ++ AY+  G+ ++A+ +F RM   G +P   TY V++ 
Sbjct: 201 AAKLLDKIPLQDYMLDVRAYTTILHAYSRTGKYEKAINLFERMKEMGPSPTLVTYNVILD 260

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
                     KILG     L EM  KG++ +  T + V  A  R   + EA+    ++K+
Sbjct: 261 VFGKMGRSWRKILG----VLEEMRSKGLKFDEFTCSTVLSACAREGLLREAKDFFAELKS 316

Query: 226 KGFVP 230
            G+ P
Sbjct: 317 CGYEP 321



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 72/182 (39%), Gaps = 9/182 (4%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F+ M+  G   N      +   L K   ++E +++   +K  G  P+      ++   
Sbjct: 414 KLFYSMKEAGCVPNTCTYNAVLSMLGKKSRSNEMIKMLCDMKSNGCFPNRATWNTILALC 473

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
            + G  K   RVF  M + G  P+  T+  LI     +A G      DA K   EM   G
Sbjct: 474 GNKGMDKFVNRVFREMKSCGFEPDRDTFNTLI-----SAYGRCGSEVDASKMYGEMTRAG 528

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL-IDKRGQGFRGVI 251
                 TY A+  A  R         ++  MK+KGF P E +    L    +G  + G+ 
Sbjct: 529 FNACVTTYNALLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIE 588

Query: 252 NI 253
            I
Sbjct: 589 RI 590



 Score = 43.9 bits (102), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 34/165 (20%), Positives = 71/165 (43%), Gaps = 11/165 (6%)

Query: 87  TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFM 146
           T NA  + +AL++ G       + + +K KG  P   +++ +++ YA  G      R+  
Sbjct: 535 TYNA--LLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIEE 592

Query: 147 RMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEA 206
            +    + P+      L+      A+   + L  +++        G +P+   + ++   
Sbjct: 593 GINEGQIFPSWMLLRTLL-----LANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSI 647

Query: 207 FVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID---KRGQGFR 248
           F R    D+A G+LQ +   G  PD      +L+D   +RG+ ++
Sbjct: 648 FTRNNMYDQAEGILQSIHEDGLNPD-LVTYNSLMDMYVRRGECWK 691



 Score = 39.7 bits (91), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 15/126 (11%)

Query: 110 FAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI----- 164
           F   K  G+ PD+V   +++  +       +A  +   +   G+ P+  TY  L+     
Sbjct: 626 FTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILQSIHEDGLNPDLVTYNSLMDMYVR 685

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           +G    A+   K L  +Q          ++P+  +Y  V + F R   + EA  +L +M 
Sbjct: 686 RGECWKAEEILKTLEKSQ----------LKPDLVSYNTVIKGFCRKGLMQEAVRMLSEMT 735

Query: 225 AKGFVP 230
            +G  P
Sbjct: 736 ERGIRP 741


>gi|410109943|gb|AFV61051.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rotundifolia]
          Length = 425

 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 17/238 (7%)

Query: 2   AATAILRWLLHSPSPKRS-LRITNTRVNATLQRSLSSSSDQPTKKYVNTKS-KLPPPYDP 59
           +A+A+   +L +   +RS + + +  + A L+   S       + Y  T+  KL  P+D 
Sbjct: 47  SASAVFAAILETKGTQRSDIYVFSGLITAYLE---SGFLRDAIECYTLTREHKLWVPFDT 103

Query: 60  FKKVVDEEPTDPRNLQEI--FHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQI 113
            +KV+ E     +  + +  F++   E     ++  F+ L     KDG    A  +F  I
Sbjct: 104 CRKVL-EHLMKLKYFKLVWGFYEDILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAI 162

Query: 114 KDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADG 173
              G  P VV++  ++  Y   G   E  R+   MLASGV P+ YTY+VLI GL   +  
Sbjct: 163 TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESK- 221

Query: 174 NAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
               + DA +   EM+ KG+ PN  T+T + +   +  +VD A  + +QM ++   PD
Sbjct: 222 ----MDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 275



 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 85/201 (42%), Gaps = 35/201 (17%)

Query: 63  VVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM 119
           +  E   D  N  E+F +M  +GL  N V    + D   K+G    A++++ Q+  +   
Sbjct: 216 LCKESKMDDAN--ELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 273

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN----- 174
           PD++ +  +I      G  K+A  +   M   G+ P+ +TY  LI G     D +     
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEH 333

Query: 175 -----------------AKILG--------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
                            A I G        DA+K L EM+  G++P+ GTYT +   F +
Sbjct: 334 RKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDIGTYTMIINEFCK 393

Query: 210 AQKVDEARGLLQQMKAKGFVP 230
              V +   LL++M+  G  P
Sbjct: 394 KGDVWKGSKLLKEMQRNGHAP 414


>gi|357499785|ref|XP_003620181.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495196|gb|AES76399.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 559

 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 78/139 (56%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D++ K  L +EA  L++++  KG  PDVV + A+I  +   G+ K+A  +F +M+   
Sbjct: 218 IIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMIFEN 277

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN YT+ +L+ G         + L +A+  L  M+ +G++P+  TY ++ + +   ++
Sbjct: 278 INPNVYTFNILVDGFCK-----ERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKE 332

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V++A+ +   +  +G  P+
Sbjct: 333 VNKAKHIFNTISQRGVNPN 351



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 68/139 (48%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K G T  ALQL  ++  K   P+VV +  +I++        EA  ++  M++ G
Sbjct: 183 LINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKG 242

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           ++P+  TY  LI G           + DA     +M+ + + PN  T+  + + F + ++
Sbjct: 243 ISPDVVTYNALISGFCIVGK-----MKDATDLFNKMIFENINPNVYTFNILVDGFCKERR 297

Query: 213 VDEARGLLQQMKAKGFVPD 231
           + EA+ +L  M  +G  PD
Sbjct: 298 LKEAKNVLAMMMKQGIKPD 316



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 76/159 (47%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
            +F +M    +  + V    + D L K G    AL+L  ++ D+G   D + + ++++A 
Sbjct: 373 NLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPHDKITYNSILDAL 432

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               Q  +A+ +  +M   G+ P+  TY  L+ GL      N + L DA+    +++ KG
Sbjct: 433 CKNHQVDKAIALLTKMKDEGIQPDICTYTTLVDGLCK----NGR-LEDARIVFEDLLVKG 487

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              +   YTA+ + F      DE+  LL +M+  G +P+
Sbjct: 488 YILDVNIYTAMIQGFCSHGLFDESLDLLSKMEENGCIPN 526



 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 79/169 (46%), Gaps = 9/169 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F+KM  E +  N      + D   K+    EA  + A +  +G  PDV  + ++++ Y
Sbjct: 268 DLFNKMIFENINPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRY 327

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               +  +A  +F  +   GV PN ++Y+++I G         K + +A     EM    
Sbjct: 328 CLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCK-----IKKVDEAMNLFKEMHCNN 382

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           + P+  TY ++ +   +  K+  A  L+ +M  +G VP +K    +++D
Sbjct: 383 IIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRG-VPHDKITYNSILD 430



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 71/145 (48%), Gaps = 7/145 (4%)

Query: 84  EGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALR 143
           + +T N++   DAL K+    +A+ L  ++KD+G  PD+  +T +++     G+ ++A  
Sbjct: 421 DKITYNSI--LDALCKNHQVDKAIALLTKMKDEGIQPDICTYTTLVDGLCKNGRLEDARI 478

Query: 144 VFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAV 203
           VF  +L  G   +   Y  +I+G  +       +  ++   L +M   G  PNA TY  +
Sbjct: 479 VFEDLLVKGYILDVNIYTAMIQGFCSHG-----LFDESLDLLSKMEENGCIPNAVTYEII 533

Query: 204 FEAFVRAQKVDEARGLLQQMKAKGF 228
             +     + D+A  LL++M  +G 
Sbjct: 534 ICSLFDKDENDKAEKLLREMITRGL 558



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 65/129 (50%), Gaps = 5/129 (3%)

Query: 103 THEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAV 162
            ++A  +F  I  +G  P++ +++ +I  +    +  EA+ +F  M  + + P+  TY  
Sbjct: 333 VNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNS 392

Query: 163 LIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
           LI GL          +  A K + EM  +G+  +  TY ++ +A  +  +VD+A  LL +
Sbjct: 393 LIDGLCKLGK-----ISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTK 447

Query: 223 MKAKGFVPD 231
           MK +G  PD
Sbjct: 448 MKDEGIQPD 456



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 63/117 (53%), Gaps = 8/117 (6%)

Query: 80  KMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           KM+ EG+  +      + D L K+G   +A  +F  +  KG++ DV  +TA+I+ + S G
Sbjct: 447 KMKDEGIQPDICTYTTLVDGLCKNGRLEDARIVFEDLLVKGYILDVNIYTAMIQGFCSHG 506

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
              E+L +  +M  +G  PNA TY ++I  L    D N K    A+K L EM+ +G+
Sbjct: 507 LFDESLDLLSKMEENGCIPNAVTYEIIICSL-FDKDENDK----AEKLLREMITRGL 558



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 80/176 (45%), Gaps = 13/176 (7%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + IF+ +   G+  N      M     K     EA+ LF ++     +PDVV + ++I+ 
Sbjct: 337 KHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDG 396

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G+   AL++   M   GV  +  TY  ++  L      +  I       L +M  +
Sbjct: 397 LCKLGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAI-----ALLTKMKDE 451

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGF 247
           G++P+  TYT + +   +  ++++AR + + +  KG++ D   +  A+I    QGF
Sbjct: 452 GIQPDICTYTTLVDGLCKNGRLEDARIVFEDLLVKGYILDVN-IYTAMI----QGF 502



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 60/139 (43%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L   G  H+ALQ   ++   G   + V++  +I      GQ   AL++  R+    
Sbjct: 148 LIKGLCLKGQIHQALQFHDKVVALGFHLNKVSYGTLINGLCKVGQTSAALQLLRRVDGKL 207

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V PN   Y  +I  +        K++ +A     EMV KG+ P+  TY A+   F    K
Sbjct: 208 VQPNVVMYNTIIDSMCK-----VKLVNEAFDLYSEMVSKGISPDVVTYNALISGFCIVGK 262

Query: 213 VDEARGLLQQMKAKGFVPD 231
           + +A  L  +M  +   P+
Sbjct: 263 MKDATDLFNKMIFENINPN 281



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 67/170 (39%), Gaps = 30/170 (17%)

Query: 92  KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
           K+  +L K       + L  Q++  G   D+V  + +I  ++  GQ   +  V  ++L  
Sbjct: 77  KILGSLVKSNHYSTVVSLHRQMEFNGITSDLVILSILINCFSQLGQNPLSFSVLAKILKM 136

Query: 152 GVAPNAYTYAVLIKGLA----------------------------AAADGNAKI--LGDA 181
           G  PN  T   LIKGL                                +G  K+     A
Sbjct: 137 GYEPNVITLTTLIKGLCLKGQIHQALQFHDKVVALGFHLNKVSYGTLINGLCKVGQTSAA 196

Query: 182 QKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            + L  + GK ++PN   Y  + ++  + + V+EA  L  +M +KG  PD
Sbjct: 197 LQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPD 246


>gi|410109951|gb|AFV61055.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           velutina]
          Length = 406

 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 65/237 (27%), Positives = 111/237 (46%), Gaps = 15/237 (6%)

Query: 2   AATAILRWLLHSPSPKRS-LRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPF 60
           +A+A+   +L +   +RS + + +  + A L+       D      +  K KL  P+D  
Sbjct: 28  SASAVFAAILETKGTQRSDIYVFSGLITAYLESGFLR--DAIECYXLTRKHKLWVPFDTC 85

Query: 61  KKVVDEEPTDPRNLQEI--FHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIK 114
           +KV+ E     +  + +  F++   E     ++  F+ L     KDG    A  +F  I 
Sbjct: 86  RKVL-EYLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAIT 144

Query: 115 DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174
             G  P  V++  ++  Y   G   E  R+   MLASGV P+ YTY+VLI GL   +   
Sbjct: 145 KWGLRPSAVSYNTLMNGYIRLGVLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESK-- 202

Query: 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              + DA +   EM+ KG+ PN  T+T + +   +  +VD A  + +QM ++  +PD
Sbjct: 203 ---MDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPD 256



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 83/188 (44%), Gaps = 33/188 (17%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F +M  +GL  N V    + D   K+G    A++++ Q+  +  +PD++ +  +I   
Sbjct: 208 ELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGL 267

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKG------LAAAADGNAKILG------- 179
              G  K+A  +   M   G+ P+  TY  LI G      L +A +   +++        
Sbjct: 268 CKKGDLKQAHDLIDDMSRKGLKPDKITYTTLIDGCCKEGVLVSAFEHRKRLIQENIRLDD 327

Query: 180 -----------------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
                            DA+K L EM+  G+ P+ GTYT +   F +   V +   LL++
Sbjct: 328 VVYTALISGLCQEGRSVDAEKMLREMLSVGLNPDTGTYTMIINEFCKKGDVWKGSKLLKE 387

Query: 223 MKAKGFVP 230
           M+  G VP
Sbjct: 388 MQRDGHVP 395


>gi|356561716|ref|XP_003549125.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62930,
           chloroplastic-like [Glycine max]
          Length = 556

 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 86/173 (49%), Gaps = 15/173 (8%)

Query: 62  KVVDEEPTDPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGH 118
           K+VDE  +       +F +M+ + +  N +    + D L K G       L  +++D+  
Sbjct: 363 KMVDEAIS-------LFEEMKHKNVIPNTITFNSLIDGLCKSGRIAYVWDLVDKMRDRSQ 415

Query: 119 MPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKIL 178
           + DV+ ++++I+A        +A+ +F +M+   + P+ YTY +LI GL     G  KI 
Sbjct: 416 LADVITYSSLIDALCKNCHLDQAIALFKKMITQEIQPDMYTYTILIDGLCKG--GRLKI- 472

Query: 179 GDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             AQ+    ++ KG   +  TYT +   F +A   DEA  LL +M+  G +P+
Sbjct: 473 --AQEVFQHLLIKGYHLDIRTYTVMISGFCKAGLFDEALALLSKMEDNGCIPN 523



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 86/200 (43%), Gaps = 35/200 (17%)

Query: 72  RNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           RNL+E    ++ + +  N +   D+L K+ L  EA  L++++  K   P+VV +T +I  
Sbjct: 198 RNLEE--RSIKPDVVMYNII--IDSLCKNKLVGEACNLYSEMNAKQIYPNVVTYTTLIYG 253

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA----------------------- 168
           +   G   EA+ +   M    + P+ YT+++LI  L                        
Sbjct: 254 FCIMGCLIEAVALLNEMKLKNINPDVYTFSILIDALGKEGKMKAAKIVLAVMMKAYVKPD 313

Query: 169 -----AAADGNAKI--LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221
                +  DG   +  +  A+     M   G+ P   +YT + +   + + VDEA  L +
Sbjct: 314 VVTYNSLVDGYFLVNEVKHAKYVFNSMAQSGVTPGVQSYTIMIDGLCKTKMVDEAISLFE 373

Query: 222 QMKAKGFVPDEKAVKEALID 241
           +MK K  +P+      +LID
Sbjct: 374 EMKHKNVIPNTITF-NSLID 392



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 69/149 (46%), Gaps = 6/149 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K G T  A+QL   ++++   PDVV +  +I++        EA  ++  M A  
Sbjct: 180 LINGLCKIGETKAAIQLMRNLEERSIKPDVVMYNIIIDSLCKNKLVGEACNLYSEMNAKQ 239

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN  TY  LI G           L +A   L EM  K + P+  T++ + +A  +  K
Sbjct: 240 IYPNVVTYTTLIYGFCIMG-----CLIEAVALLNEMKLKNINPDVYTFSILIDALGKEGK 294

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALID 241
           +  A+ +L  M  K +V  +     +L+D
Sbjct: 295 MKAAKIVLAVM-MKAYVKPDVVTYNSLVD 322



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 66/139 (47%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DAL K+G    A  + A +      PDVV + ++++ Y    + K A  VF  M  SG
Sbjct: 285 LIDALGKEGKMKAAKIVLAVMMKAYVKPDVVTYNSLVDGYFLVNEVKHAKYVFNSMAQSG 344

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V P   +Y ++I GL        K++ +A     EM  K + PN  T+ ++ +   ++ +
Sbjct: 345 VTPGVQSYTIMIDGLC-----KTKMVDEAISLFEEMKHKNVIPNTITFNSLIDGLCKSGR 399

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +     L+ +M+ +  + D
Sbjct: 400 IAYVWDLVDKMRDRSQLAD 418



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 8/120 (6%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F KM T+ +  +      + D L K G    A ++F  +  KG+  D+  +T +I  + 
Sbjct: 441 LFKKMITQEIQPDMYTYTILIDGLCKGGRLKIAQEVFQHLLIKGYHLDIRTYTVMISGFC 500

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG   EAL +  +M  +G  PNA T+ ++I  L    D N K    A+K L EM+ +G+
Sbjct: 501 KAGLFDEALALLSKMEDNGCIPNAITFDIIICAL-FEKDENDK----AEKLLREMIARGL 555


>gi|296086456|emb|CBI32045.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 69/136 (50%), Gaps = 5/136 (3%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L + G   EA +LF ++  K   PD V +TA+I+ Y   G+ KEA  +  +ML  G+ P
Sbjct: 302 GLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTP 361

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           N  TY  L  GL    + +      A + L EM  KG+  N  TY ++     +A  +D+
Sbjct: 362 NIVTYTALADGLCKCGEVDT-----ANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQ 416

Query: 216 ARGLLQQMKAKGFVPD 231
           A  L++ M+  GF PD
Sbjct: 417 AVKLMKDMEVAGFHPD 432



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 89/186 (47%), Gaps = 10/186 (5%)

Query: 50  KSKLPPPYDPFKKVVDEEPTDPRNLQ--EIFHKMRTEGLTNNAVK---MFDALSKDGLTH 104
           K K+ P +  +  V+       R ++  ++FH+M  + L  + V    + D   K+G   
Sbjct: 286 KRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMK 345

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA  L  Q+   G  P++V +TA+ +     G+   A  +   M   G+  N YTY  L+
Sbjct: 346 EAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLV 405

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            GL  A  GN   +  A K + +M   G  P+A TYT + +A+ +++++  A  LL+QM 
Sbjct: 406 NGLCKA--GN---IDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQML 460

Query: 225 AKGFVP 230
            +   P
Sbjct: 461 DRELQP 466



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 78/160 (48%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            E+ H+M  +GL  N      + + L K G   +A++L   ++  G  PD V +T +++A
Sbjct: 383 NELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDA 442

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y  + +   A  +  +ML   + P   T+ VL+ G   +      +L D +K L  M+ K
Sbjct: 443 YCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSG-----MLEDGEKLLKWMLEK 497

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G+ PNA TY ++ + +     +     + + M AKG VPD
Sbjct: 498 GIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPD 537



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 69/141 (48%), Gaps = 5/141 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +     G+  +  +L   + +KG MP+   + ++I+ Y      +    ++  M A G
Sbjct: 474 LMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKG 533

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V P+  TY +LIKG   A +     + +A     +MVGKG      +Y A+ + F + +K
Sbjct: 534 VVPDGNTYNILIKGHCKARN-----MKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKK 588

Query: 213 VDEARGLLQQMKAKGFVPDEK 233
             EAR L +QM+ +G V D +
Sbjct: 589 FLEARELFEQMRREGLVADRE 609



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 77/161 (47%), Gaps = 12/161 (7%)

Query: 76  EIFHKMRTEGL-----TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           ++  +M+ +GL     T N V +   L K G   EA ++  ++  +G  PD V +T +I+
Sbjct: 209 KLIEEMQIKGLKPNPYTYNGVILL--LCKTGKVAEAERVLREMISEGIAPDGVIYTTLID 266

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
            +   G    A R+F  M    ++P+  TY  +I GL          + +A K   EMV 
Sbjct: 267 GFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGR-----VMEADKLFHEMVC 321

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           K + P+  TYTA+ + + +  K+ EA  L  QM   G  P+
Sbjct: 322 KRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPN 362



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 83/177 (46%), Gaps = 16/177 (9%)

Query: 75  QEIFHKMRTEGL--TNNAVKMFDA-LSKD------GLTHE-ALQLFAQIKDKGHMPDVVA 124
           +++F KM   GL  + ++  +F + LS+D       L  E  L+L  +++ KG  P+   
Sbjct: 166 RKLFDKMLNYGLLISVDSCNLFISHLSEDLDGIKIALKGEWVLKLIEEMQIKGLKPNPYT 225

Query: 125 HTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKY 184
           +  VI      G+  EA RV   M++ G+AP+   Y  LI G      GN   +  A + 
Sbjct: 226 YNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKL--GN---VSSAYRL 280

Query: 185 LMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
             EM  + + P+  TYTAV     +  +V EA  L  +M  K   PDE     ALID
Sbjct: 281 FDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDE-VTYTALID 336


>gi|115482066|ref|NP_001064626.1| Os10g0421800 [Oryza sativa Japonica Group]
 gi|113639235|dbj|BAF26540.1| Os10g0421800, partial [Oryza sativa Japonica Group]
          Length = 973

 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 99/213 (46%), Gaps = 34/213 (15%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D +++ EI++ M+ +G  +N V    + DAL + G   EAL++F ++K KG +P+  ++ 
Sbjct: 350 DSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYN 409

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD-------------- 172
           ++I  +  A +  +AL +F  M   G  PN YT+ + I     + +              
Sbjct: 410 SLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSK 469

Query: 173 --------GNAKI--------LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
                   GNA +        LG A++   E+   G+ P+  TYT + +   +A K DEA
Sbjct: 470 GIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEA 529

Query: 217 RGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRG 249
             +   M     VPD  AV  +LID   +  RG
Sbjct: 530 VKIFYDMIENNCVPDVLAVN-SLIDTLYKAGRG 561



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 78/160 (48%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +FH+++  G++ + +    M    SK     EA+++F  + +   +PDV+A  ++I+ 
Sbjct: 495 KRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDT 554

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              AG+G EA R+F ++    + P   TY  L+ GL    +G  K   +    L EM   
Sbjct: 555 LYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGL--GREGKVK---EVMHLLEEMYHS 609

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              PN  TY  + +   +   V++A  +L  M  KG +PD
Sbjct: 610 NYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPD 649



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 77/160 (48%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +++F KM+      + V    + D    +G +   ++++  +K  G+  +VVA+TAVI+A
Sbjct: 320 KDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDA 379

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G+  EAL +F  M   G+ P  Y+Y  LI G        A   GDA +    M   
Sbjct: 380 LCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFL-----KADRFGDALELFKHMDIH 434

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G +PN  T+      + ++ +  +A    + MK+KG VPD
Sbjct: 435 GPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPD 474



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 63/128 (49%), Gaps = 5/128 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA ++ A+++++G  PDV+ HT +I+    AG+  +A  VF +M  S   P+  TY  L+
Sbjct: 283 EAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLL 342

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
                  D  +       +    M   G   N   YTAV +A  +  +V EA  +  +MK
Sbjct: 343 DKFGDNGDSQS-----VMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMK 397

Query: 225 AKGFVPDE 232
            KG VP++
Sbjct: 398 QKGIVPEQ 405



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 76/160 (47%), Gaps = 8/160 (5%)

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F  M   G   N    V   +   K G + +A+Q +  +K KG +PDVVA  AV+   
Sbjct: 426 ELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGL 485

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           A +G+   A RVF  + A GV+P+  TY ++IK  + A+        +A K   +M+   
Sbjct: 486 AKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASK-----FDEAVKIFYDMIENN 540

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
             P+     ++ +   +A + DEA  +  Q+K     P +
Sbjct: 541 CVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTD 580



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 77/158 (48%), Gaps = 8/158 (5%)

Query: 87  TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFM 146
           T N +  F  L K G   EAL+++  +   G +P V  ++ ++ A+      +  L +  
Sbjct: 197 TYNGLVYF--LVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLR 254

Query: 147 RMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEA 206
            M A GV PN Y+Y + I+ L     G AK   +A + L +M  +G +P+  T+T + + 
Sbjct: 255 EMEAHGVKPNVYSYTICIRVL-----GQAKRFDEAYRILAKMENEGCKPDVITHTVLIQV 309

Query: 207 FVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRG 244
              A ++ +A+ +  +MK     PD +     L+DK G
Sbjct: 310 LCDAGRISDAKDVFWKMKKSDQKPD-RVTYITLLDKFG 346



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 8/162 (4%)

Query: 73  NLQEIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           ++ E+F  M+ + +  N      +F  L  +G    A      +K+ G + +   +  ++
Sbjct: 143 DMAEVFDVMQRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLV 202

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
                +G  +EAL V+  M+  GV P+  TY+VL+      A G  + +      L EM 
Sbjct: 203 YFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLM-----VAFGKRRDVETVLWLLREME 257

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             G++PN  +YT       +A++ DEA  +L +M+ +G  PD
Sbjct: 258 AHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPD 299



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 76/175 (43%), Gaps = 10/175 (5%)

Query: 63  VVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM 119
           +VDE   D    + +F +M+  G   +      + DA+ K     E L++  ++  KG+ 
Sbjct: 800 LVDENLIDIA--EGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYE 857

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
              V +  +I     + + ++A+ ++  +++ G +P   TY  L+ GL  A       + 
Sbjct: 858 STYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGR-----IE 912

Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
           DA+    EM+  G + N   Y  +      A   ++   L Q M  +G  PD K+
Sbjct: 913 DAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKS 967



 Score = 41.2 bits (95), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 3/76 (3%)

Query: 74  LQEIFHKMRTEGL-TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           L+E++H      L T N +   D L K+G  ++AL +   +  KG +PD+ ++  VI   
Sbjct: 603 LEEMYHSNYPPNLITYNTI--LDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGL 660

Query: 133 ASAGQGKEALRVFMRM 148
               +  EA  +F +M
Sbjct: 661 VKEERYNEAFSIFCQM 676


>gi|410109935|gb|AFV61047.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           origanoides]
          Length = 431

 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 91/186 (48%), Gaps = 12/186 (6%)

Query: 52  KLPPPYDPFKKVVDEEPTDPRNLQEI--FHKMRTEGLTNNAVKMFDAL----SKDGLTHE 105
           KL  P+D  +KV+ E     +  + +  F++   E     ++  F+ L     KDG    
Sbjct: 102 KLWVPFDTCRKVL-EYLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRV 160

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A  +F  I   G  P VV+   ++  Y   G   E  R+   MLASGV P+ YTY+VLI 
Sbjct: 161 AQSVFDAITKWGLRPSVVSXNTLMNGYIRLGDLDEGFRLKSVMLASGVQPDVYTYSVLIN 220

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           GL   +      + DA +   EM+ KG+ PN  T+T + +   +  +VD A+ + +QM +
Sbjct: 221 GLCKESK-----MDDANEXFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAKEIYKQMLS 275

Query: 226 KGFVPD 231
           +  +PD
Sbjct: 276 QSLLPD 281



 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 82/201 (40%), Gaps = 35/201 (17%)

Query: 63  VVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM 119
           +  E   D  N  E F +M  +GL  N V    + D   K+G    A +++ Q+  +  +
Sbjct: 222 LCKESKMDDAN--EXFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAKEIYKQMLSQSLL 279

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN----- 174
           PD++ +  +I      G  K+A  +   M   G+ P+  TY  LI G     D +     
Sbjct: 280 PDLITYNTLIYGLCKKGDLKQAHDLIDDMSMKGLKPDKITYTTLIBGCCKEGDLDSAFEH 339

Query: 175 -----------------AKILG--------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
                            A I G        DA+K L EM+   ++P+ GTYT +   F +
Sbjct: 340 RKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVRLKPDTGTYTMIINEFCK 399

Query: 210 AQKVDEARGLLQQMKAKGFVP 230
              V +   LL++M+  G  P
Sbjct: 400 KGDVWKGSKLLKEMQRDGHAP 420


>gi|410109871|gb|AFV61015.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           barbata]
          Length = 429

 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 69/135 (51%), Gaps = 5/135 (3%)

Query: 97  LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
             KDG    A  +F  I   G  P VV++  ++  Y   G   E  R+   MLASGV P+
Sbjct: 150 FCKDGDIRIAQSVFDAIAKWGLRPSVVSYNTLMNGYIRLGDLNEGFRLKSAMLASGVQPD 209

Query: 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
            YTY+VLI GL   +      + DA +   EM+ KG+ PN  T+T + +   +  +VD A
Sbjct: 210 VYTYSVLINGLCKESK-----MDDANELFDEMLVKGLXPNGVTFTTLIDGHCKNGRVDLA 264

Query: 217 RGLLQQMKAKGFVPD 231
             + +QM ++  +PD
Sbjct: 265 MEIYKQMLSQSLLPD 279



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 82/201 (40%), Gaps = 35/201 (17%)

Query: 63  VVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM 119
           +  E   D  N  E+F +M  +GL  N V    + D   K+G    A++++ Q+  +  +
Sbjct: 220 LCKESKMDDAN--ELFDEMLVKGLXPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLL 277

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK--- 176
           PD++ +  +I      G  K+A  +   M   G+  +  TY  LI G     D +A    
Sbjct: 278 PDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKXDKITYTTLIDGCCKEGDLDAAFEH 337

Query: 177 -------------------ILG--------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
                              I G        DA+K L EM+  G++P+  TYT +   F +
Sbjct: 338 RKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTXTYTMIINEFCK 397

Query: 210 AQKVDEARGLLQQMKAKGFVP 230
              V +   LL+ M+  G  P
Sbjct: 398 KGDVWKGSKLLKDMQRNGHAP 418


>gi|359494794|ref|XP_002267896.2| PREDICTED: pentatricopeptide repeat-containing protein At3g07290,
           mitochondrial [Vitis vinifera]
          Length = 876

 Score = 83.6 bits (205), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 46/138 (33%), Positives = 73/138 (52%), Gaps = 5/138 (3%)

Query: 94  FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGV 153
            DAL KD   +EA  +  ++   G +P VV HT +IE +  AG+   +L++  RM  +G 
Sbjct: 529 LDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGC 588

Query: 154 APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV 213
           +PN YTY ++I GL      N   + +A+  L  M   G+ PN  TY  + +A V+A ++
Sbjct: 589 SPNVYTYTIIINGLC-----NNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRL 643

Query: 214 DEARGLLQQMKAKGFVPD 231
           D A  ++  M   G  P+
Sbjct: 644 DRAFQIVSTMVKNGCQPN 661



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 11/169 (6%)

Query: 77  IFHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +F KM   GL    +  F+AL     K+G    A QL + ++     P++  +  ++E  
Sbjct: 334 VFRKMLKHGLCPGIIT-FNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGL 392

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               +  +A  +  R++ +G+ P+  TY +L+ G       N      A      M   G
Sbjct: 393 CRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNM-----AFNIFNSMNSAG 447

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           + P+  T+TA+ +   +  ++++A G+L  M  KG   DE     ALID
Sbjct: 448 LEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFT-ALID 495



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 63/132 (47%), Gaps = 5/132 (3%)

Query: 92  KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
           ++ + L +   +++A  L  ++ D G +PD V +  +++ +   GQ   A  +F  M ++
Sbjct: 387 ELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSA 446

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           G+ P+ +T+  LI GL          L  A   L  MV KG+  +  T+TA+ +   +  
Sbjct: 447 GLEPDGFTFTALIDGLCKLGR-----LEQANGILGSMVKKGISLDEVTFTALIDGHCKIG 501

Query: 212 KVDEARGLLQQM 223
           K  +   L + M
Sbjct: 502 KAKDVCFLFENM 513



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 88/206 (42%), Gaps = 38/206 (18%)

Query: 77  IFHKM-RTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +F KM + E    N+V    +   L + G   EA QL  ++ +KG  P    +T +I+A 
Sbjct: 228 VFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAK 287

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLI-----KGLAAAADG-------------- 173
              G   +A+++   M      PN +TY +LI     +G    A+G              
Sbjct: 288 CDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGI 347

Query: 174 ---NAKILGDAQK-------YLMEMVGKG-MRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
              NA I G  ++        L+ ++ KG  +PN  TY  + E   R  K  +A  LL++
Sbjct: 348 ITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRR 407

Query: 223 MKAKGFVPDEKAVKEALID---KRGQ 245
           +   G +PD +     L+D   K GQ
Sbjct: 408 VVDNGLLPD-RVTYNILVDGFCKEGQ 432



 Score = 43.9 bits (102), Expect = 0.067,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 75/191 (39%), Gaps = 34/191 (17%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++  +M+  G + N      + + L  +G   EA  +   +   G  P+   +  +++A+
Sbjct: 578 KMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAH 637

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKG------------LAAAADGNAKILGD 180
             AG+   A ++   M+ +G  PN++ Y+ L+ G            L++  D +A+ L  
Sbjct: 638 VKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSSTGDLDARSLSS 697

Query: 181 AQK----------YLMEM---------VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221
            +            LM++         + K   P    Y  +     +  ++ EA  L Q
Sbjct: 698 EENDNNCLSSHVFRLMDVDHALKIRDEIKKCGVPTEDLYNFLVVGLCKEGRIIEADQLTQ 757

Query: 222 QMKAKGFVPDE 232
            M   G  PD+
Sbjct: 758 DMVKHGLFPDK 768


>gi|356561705|ref|XP_003549120.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 445

 Score = 83.6 bits (205), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 87/170 (51%), Gaps = 5/170 (2%)

Query: 79  HKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQG 138
           H ++ + +  N +   ++L K+ L  +A  +++++  KG  PDVV +T +I  +   G+ 
Sbjct: 192 HSVKPDVVMYNTI--INSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGKM 249

Query: 139 KEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAG 198
           KEA  +   M    + P+ YT++VLI  L    +G  K++ +A     EM  K M P+  
Sbjct: 250 KEAFSLLNEMKLKNINPDVYTFSVLIDAL--GKEGKKKMVDEAMSLFEEMKHKNMIPDIV 307

Query: 199 TYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFR 248
           TY ++ +   +   ++ A  LL++MK  G  PD  +    L+D   +G R
Sbjct: 308 TYNSLIDGLCKNHHLERAIALLKEMKEHGIQPDVYSYT-ILLDGLCKGGR 356



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 83/172 (48%), Gaps = 15/172 (8%)

Query: 61  KKVVDEEPTDPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKG 117
           KK+VDE          +F +M+ + +  + V    + D L K+     A+ L  ++K+ G
Sbjct: 284 KKMVDEA-------MSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALLKEMKEHG 336

Query: 118 HMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKI 177
             PDV ++T +++     G+ + A   F  +L  G   N + Y V+I GL  A      +
Sbjct: 337 IQPDVYSYTILLDGLCKGGRLEIAKEFFQHLLVKGCHLNVWPYNVMINGLCKAG-----L 391

Query: 178 LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFV 229
            G+A     +M GKG  PNA T+  +  A     + D+A  +L++M A+G +
Sbjct: 392 FGEAMDLKSKMEGKGCMPNAITFRTIICALSEKDENDKAEKILREMIARGLL 443



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 91/229 (39%), Gaps = 40/229 (17%)

Query: 54  PPPYDPFKKVVDEEPTDPR--NLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEA----- 106
           PPP   F  ++     + R   +  +F +    G+T +   +  ++  +   H+A     
Sbjct: 55  PPPTFLFNNILSSLVKNKRYPTVISLFKQFEPNGITPDLCTL--SILINCFCHQAHITLA 112

Query: 107 LQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKG 166
             +FA I  +G  PD +    +I+     G+ K+ L    +++A G   +  +Y  LI G
Sbjct: 113 FSVFANILKRGFHPDAITLNTLIKGLCFRGEIKKTLYFHDQVVAQGFQLDQVSYGTLING 172

Query: 167 LAAAADGNA------------------------------KILGDAQKYLMEMVGKGMRPN 196
           L  A +  A                              K+LGDA     EM+ KG+ P+
Sbjct: 173 LCKAGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPD 232

Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
             TYT +   F    K+ EA  LL +MK K   PD       LID  G+
Sbjct: 233 VVTYTTLIHGFCIMGKMKEAFSLLNEMKLKNINPDVYTF-SVLIDALGK 280



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 71/142 (50%), Gaps = 8/142 (5%)

Query: 93  MFDALSKDG---LTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRML 149
           + DAL K+G   +  EA+ LF ++K K  +PD+V + ++I+        + A+ +   M 
Sbjct: 274 LIDALGKEGKKKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALLKEMK 333

Query: 150 ASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
             G+ P+ Y+Y +L+ GL     G  +I   A+++   ++ KG   N   Y  +     +
Sbjct: 334 EHGIQPDVYSYTILLDGLCKG--GRLEI---AKEFFQHLLVKGCHLNVWPYNVMINGLCK 388

Query: 210 AQKVDEARGLLQQMKAKGFVPD 231
           A    EA  L  +M+ KG +P+
Sbjct: 389 AGLFGEAMDLKSKMEGKGCMPN 410



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 70/152 (46%), Gaps = 9/152 (5%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K G T    +L  +++     PDVV +  +I +        +A  V+  M+  G
Sbjct: 169 LINGLCKAGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKG 228

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           ++P+  TY  LI G           + +A   L EM  K + P+  T++ + +A  +  K
Sbjct: 229 ISPDVVTYTTLIHGFCIMGK-----MKEAFSLLNEMKLKNINPDVYTFSVLIDALGKEGK 283

Query: 213 ---VDEARGLLQQMKAKGFVPDEKAVKEALID 241
              VDEA  L ++MK K  +PD      +LID
Sbjct: 284 KKMVDEAMSLFEEMKHKNMIPD-IVTYNSLID 314


>gi|296088147|emb|CBI35592.3| unnamed protein product [Vitis vinifera]
          Length = 883

 Score = 83.6 bits (205), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 46/138 (33%), Positives = 73/138 (52%), Gaps = 5/138 (3%)

Query: 94  FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGV 153
            DAL KD   +EA  +  ++   G +P VV HT +IE +  AG+   +L++  RM  +G 
Sbjct: 552 LDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGC 611

Query: 154 APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV 213
           +PN YTY ++I GL      N   + +A+  L  M   G+ PN  TY  + +A V+A ++
Sbjct: 612 SPNVYTYTIIINGLC-----NNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRL 666

Query: 214 DEARGLLQQMKAKGFVPD 231
           D A  ++  M   G  P+
Sbjct: 667 DRAFQIVSTMVKNGCQPN 684



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 11/169 (6%)

Query: 77  IFHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +F KM   GL    +  F+AL     K+G    A QL + ++     P++  +  ++E  
Sbjct: 357 VFRKMLKHGLCPGIIT-FNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGL 415

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               +  +A  +  R++ +G+ P+  TY +L+ G       N      A      M   G
Sbjct: 416 CRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNM-----AFNIFNSMNSAG 470

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           + P+  T+TA+ +   +  ++++A G+L  M  KG   DE     ALID
Sbjct: 471 LEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFT-ALID 518



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 63/132 (47%), Gaps = 5/132 (3%)

Query: 92  KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
           ++ + L +   +++A  L  ++ D G +PD V +  +++ +   GQ   A  +F  M ++
Sbjct: 410 ELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSA 469

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           G+ P+ +T+  LI GL          L  A   L  MV KG+  +  T+TA+ +   +  
Sbjct: 470 GLEPDGFTFTALIDGLCKLGR-----LEQANGILGSMVKKGISLDEVTFTALIDGHCKIG 524

Query: 212 KVDEARGLLQQM 223
           K  +   L + M
Sbjct: 525 KAKDVCFLFENM 536



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 88/206 (42%), Gaps = 38/206 (18%)

Query: 77  IFHKM-RTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +F KM + E    N+V    +   L + G   EA QL  ++ +KG  P    +T +I+A 
Sbjct: 251 VFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAK 310

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLI-----KGLAAAADG-------------- 173
              G   +A+++   M      PN +TY +LI     +G    A+G              
Sbjct: 311 CDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGI 370

Query: 174 ---NAKILGDAQK-------YLMEMVGKG-MRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
              NA I G  ++        L+ ++ KG  +PN  TY  + E   R  K  +A  LL++
Sbjct: 371 ITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRR 430

Query: 223 MKAKGFVPDEKAVKEALID---KRGQ 245
           +   G +PD +     L+D   K GQ
Sbjct: 431 VVDNGLLPD-RVTYNILVDGFCKEGQ 455



 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 72/175 (41%), Gaps = 18/175 (10%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++  +M+  G + N      + + L  +G   EA  +   +   G  P+   +  +++A+
Sbjct: 601 KMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAH 660

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKG------------LAAAADGNAKILGD 180
             AG+   A ++   M+ +G  PN++ Y+ L+ G            L++  D +A+ L  
Sbjct: 661 VKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSSTGDLDARSLSS 720

Query: 181 AQ---KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
            +     L   + K   P    Y  +     +  ++ EA  L Q M   G  PD+
Sbjct: 721 EENDNNCLSNEIKKCGVPTEDLYNFLVVGLCKEGRIIEADQLTQDMVKHGLFPDK 775


>gi|147866209|emb|CAN83683.1| hypothetical protein VITISV_017537 [Vitis vinifera]
          Length = 833

 Score = 83.6 bits (205), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 46/138 (33%), Positives = 73/138 (52%), Gaps = 5/138 (3%)

Query: 94  FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGV 153
            DAL KD   +EA  +  ++   G +P VV HT +IE +  AG+   +L++  RM  +G 
Sbjct: 486 LDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGC 545

Query: 154 APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV 213
           +PN YTY ++I GL      N   + +A+  L  M   G+ PN  TY  + +A V+A ++
Sbjct: 546 SPNVYTYTIIINGLC-----NNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRL 600

Query: 214 DEARGLLQQMKAKGFVPD 231
           D A  ++  M   G  P+
Sbjct: 601 DRAFQIVSTMVKNGCQPN 618



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 11/169 (6%)

Query: 77  IFHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +F KM   GL    +  F+AL     K+G    A QL + ++     P++  +  ++E  
Sbjct: 291 VFRKMLKHGLCPGIIT-FNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGL 349

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               +  +A  +  R++ +G+ P+  TY +L+ G       N      A      M   G
Sbjct: 350 CRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNM-----AFNIFNSMNSAG 404

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           + P+  T+TA+ +   +  ++++A G+L  M  KG   DE     ALID
Sbjct: 405 LEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFT-ALID 452



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 63/132 (47%), Gaps = 5/132 (3%)

Query: 92  KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
           ++ + L +   +++A  L  ++ D G +PD V +  +++ +   GQ   A  +F  M ++
Sbjct: 344 ELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSA 403

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           G+ P+ +T+  LI GL          L  A   L  MV KG+  +  T+TA+ +   +  
Sbjct: 404 GLEPDGFTFTALIDGLCKLGR-----LEQANGILGSMVKKGISLDEVTFTALIDGHCKIG 458

Query: 212 KVDEARGLLQQM 223
           K  +   L + M
Sbjct: 459 KAKDVCFLFENM 470



 Score = 57.4 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 55/206 (26%), Positives = 88/206 (42%), Gaps = 38/206 (18%)

Query: 77  IFHKM-RTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +F KM + E    N+V    +   L + G   EA QL  ++ +KG  P    +T +I+A 
Sbjct: 185 VFEKMSKEESCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAK 244

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLI-----KGLAAAADG-------------- 173
              G   +A+++   M      PN +TY +LI     +G    A+G              
Sbjct: 245 CDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGI 304

Query: 174 ---NAKILGDAQK-------YLMEMVGKG-MRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
              NA I G  ++        L+ ++ KG  +PN  TY  + E   R  K  +A  LL++
Sbjct: 305 ITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRR 364

Query: 223 MKAKGFVPDEKAVKEALID---KRGQ 245
           +   G +PD +     L+D   K GQ
Sbjct: 365 VVDNGLLPD-RVTYNILVDGFCKEGQ 389



 Score = 43.9 bits (102), Expect = 0.067,   Method: Composition-based stats.
 Identities = 37/191 (19%), Positives = 75/191 (39%), Gaps = 34/191 (17%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++  +M+  G + N      + + L  +G   EA  +   +   G  P+   +  +++A+
Sbjct: 535 KMLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAH 594

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKG------------LAAAADGNAKILGD 180
             AG+   A ++   M+ +G  PN++ Y+ L+ G            L++  D +A+ L  
Sbjct: 595 VKAGRLDRAFQIVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSSTGDLDARSLSS 654

Query: 181 AQK----------YLMEM---------VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221
            +            LM++         + K   P    Y  +     +  ++ EA  L Q
Sbjct: 655 EENDNNCLSSHVFRLMDVDHALKIRDEIKKCGVPTEDLYNFLVVGLCKEGRIIEADQLTQ 714

Query: 222 QMKAKGFVPDE 232
            M   G  PD+
Sbjct: 715 DMVKHGLFPDK 725


>gi|15224262|ref|NP_179484.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75099137|sp|O64624.1|PP163_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g18940
 gi|3004555|gb|AAC09028.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|15983785|gb|AAL10489.1| At2g18940/F19F24.14 [Arabidopsis thaliana]
 gi|38564280|gb|AAR23719.1| At2g18940/F19F24.14 [Arabidopsis thaliana]
 gi|330251736|gb|AEC06830.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score = 83.6 bits (205), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 83/163 (50%), Gaps = 8/163 (4%)

Query: 72  RNLQEIFHKMRTEGLTNN---AVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R +  +  +MR++GL  +      +  A +++GL  EA + FA++K  G+ P  V + A+
Sbjct: 263 RKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNAL 322

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           ++ +  AG   EAL V   M  +    ++ TY  L+     AA   A    +A   +  M
Sbjct: 323 LQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELV-----AAYVRAGFSKEAAGVIEMM 377

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             KG+ PNA TYT V +A+ +A K DEA  L   MK  G VP+
Sbjct: 378 TKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPN 420



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 68/137 (49%), Gaps = 7/137 (5%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
           A  + G + EA  +   +  KG MP+ + +T VI+AY  AG+  EAL++F  M  +G  P
Sbjct: 360 AYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVP 419

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           N  TY  ++  L   +  N  I     K L +M   G  PN  T+  +  A    + +D+
Sbjct: 420 NTCTYNAVLSLLGKKSRSNEMI-----KMLCDMKSNGCSPNRATWNTML-ALCGNKGMDK 473

Query: 216 -ARGLLQQMKAKGFVPD 231
               + ++MK+ GF PD
Sbjct: 474 FVNRVFREMKSCGFEPD 490



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 81/189 (42%), Gaps = 12/189 (6%)

Query: 72  RNLQEIFHKMRTEG-----LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           R  +E F ++++ G     +T NA  +     K G+  EAL +  ++++     D V + 
Sbjct: 298 REAKEFFAELKSCGYEPGTVTYNA--LLQVFGKAGVYTEALSVLKEMEENSCPADSVTYN 355

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
            ++ AY  AG  KEA  V   M   GV PNA TY  +I      A G A    +A K   
Sbjct: 356 ELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVID-----AYGKAGKEDEALKLFY 410

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
            M   G  PN  TY AV     +  + +E   +L  MK+ G  P+       L     +G
Sbjct: 411 SMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKG 470

Query: 247 FRGVINILF 255
               +N +F
Sbjct: 471 MDKFVNRVF 479



 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 74/163 (45%), Gaps = 8/163 (4%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           I   +R +GL+ + V    + D   + G   +A ++   ++     PD+V++  VI+ + 
Sbjct: 653 ILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFC 712

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G  +EA+R+   M   G+ P  +TY   + G  A       +  + +  +  M     
Sbjct: 713 RRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMG-----MFAEIEDVIECMAKNDC 767

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK 236
           RPN  T+  V + + RA K  EA   + ++K      D+++++
Sbjct: 768 RPNELTFKMVVDGYCRAGKYSEAMDFVSKIKTFDPCFDDQSIQ 810



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 8/155 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +   M  +G+  NA+    + DA  K G   EAL+LF  +K+ G +P+   + AV+    
Sbjct: 373 VIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLG 432

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
              +  E +++   M ++G +PN  T+  ++     A  GN  +     +   EM   G 
Sbjct: 433 KKSRSNEMIKMLCDMKSNGCSPNRATWNTML-----ALCGNKGMDKFVNRVFREMKSCGF 487

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
            P+  T+  +  A+ R     +A  +  +M   GF
Sbjct: 488 EPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGF 522



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 4/125 (3%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A +L  +I  + ++ DV A+T ++ AY+  G+ ++A+ +F RM   G +P   TY V++ 
Sbjct: 194 AAKLLDKIPLQEYLLDVRAYTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVTYNVILD 253

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
                     KILG     L EM  KG++ +  T + V  A  R   + EA+    ++K+
Sbjct: 254 VFGKMGRSWRKILG----VLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKS 309

Query: 226 KGFVP 230
            G+ P
Sbjct: 310 CGYEP 314



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/165 (20%), Positives = 73/165 (44%), Gaps = 11/165 (6%)

Query: 87  TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFM 146
           T NA  + +AL++ G       + + +K KG  P   +++ +++ YA  G      R+  
Sbjct: 528 TYNA--LLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIEN 585

Query: 147 RMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEA 206
           R+    + P+      L+      A+   + L  +++        G +P+   + ++   
Sbjct: 586 RIKEGQIFPSWMLLRTLL-----LANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSI 640

Query: 207 FVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID---KRGQGFR 248
           F R    D+A G+L+ ++  G  PD      +L+D   +RG+ ++
Sbjct: 641 FTRNNMYDQAEGILESIREDGLSPD-LVTYNSLMDMYVRRGECWK 684



 Score = 43.9 bits (102), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 28/133 (21%), Positives = 54/133 (40%), Gaps = 8/133 (6%)

Query: 81  MRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ 137
           M++ G + N      M       G+     ++F ++K  G  PD      +I AY   G 
Sbjct: 447 MKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGS 506

Query: 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA 197
             +A +++  M  +G      TY  L+  LA   D  +      +  + +M  KG +P  
Sbjct: 507 EVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRS-----GENVISDMKSKGFKPTE 561

Query: 198 GTYTAVFEAFVRA 210
            +Y+ + + + + 
Sbjct: 562 TSYSLMLQCYAKG 574



 Score = 40.0 bits (92), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 15/126 (11%)

Query: 110 FAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI----- 164
           F   K  G+ PD+V   +++  +       +A  +   +   G++P+  TY  L+     
Sbjct: 619 FTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVR 678

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           +G    A+   K L  +Q          ++P+  +Y  V + F R   + EA  +L +M 
Sbjct: 679 RGECWKAEEILKTLEKSQ----------LKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMT 728

Query: 225 AKGFVP 230
            +G  P
Sbjct: 729 ERGIRP 734


>gi|6692112|gb|AAF24577.1|AC007764_19 F22C12.14 [Arabidopsis thaliana]
          Length = 661

 Score = 83.2 bits (204), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 92/184 (50%), Gaps = 10/184 (5%)

Query: 53  LPPPYDPFKKVVDEEPTDPRNLQE--IFHKMRTEGLTNNAVK---MFDALSKDGLTHEAL 107
           L P    F  +++    + R L+   + +KM  +GL  + V    + + + K G T  AL
Sbjct: 217 LTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSAL 276

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
            L +++++    PDVV ++A+I+     G   +A  +F  ML  G+APN +TY  +I G 
Sbjct: 277 NLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGF 336

Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
            +    +     DAQ+ L +M+ + + P+  T+ A+  A V+  K+ EA  L  +M  + 
Sbjct: 337 CSFGRWS-----DAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRC 391

Query: 228 FVPD 231
             PD
Sbjct: 392 IFPD 395



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 75/165 (45%), Gaps = 8/165 (4%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           Q++F +M + G+  + +    +     ++    EAL+LF  I+      D VA+  +I  
Sbjct: 482 QDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHG 541

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
                +  EA  +F  +   GV P+  TY V+I G    +      + DA     +M   
Sbjct: 542 MCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKS-----AISDANVLFHKMKDN 596

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK 236
           G  P+  TY  +    ++A ++D++  L+ +M++ GF  D   +K
Sbjct: 597 GHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIK 641



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 89/225 (39%), Gaps = 36/225 (16%)

Query: 43  TKKYVNTKSKLP-----PPYDPFKKVVDEEPTDPR--NLQEIFHKMRTEGLTNNAVK--- 92
           TK  +N  SK+      P    +  ++D    D    + Q +F +M  +G+  N      
Sbjct: 272 TKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNC 331

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M D     G   +A +L   + ++   PDV+   A+I A    G+  EA ++   ML   
Sbjct: 332 MIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRC 391

Query: 153 VAPNAYTYAVLIKG---------------LAAAAD-----------GNAKILGDAQKYLM 186
           + P+  TY  +I G               L A+ D             AK + +  + L 
Sbjct: 392 IFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLR 451

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           E+  +G+  N  TY  +   F     ++ A+ L Q+M + G  PD
Sbjct: 452 EISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPD 496



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 11/119 (9%)

Query: 112 QIKDKGHM------PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           +  D  HM      PDVV    +I+ Y  A +  E +++   +   G+  N  TY  LI 
Sbjct: 411 RFDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIH 470

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           G     + NA     AQ    EM+  G+ P+  T   +   F   +K++EA  L + ++
Sbjct: 471 GFCEVDNLNA-----AQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQ 524



 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 63/147 (42%), Gaps = 16/147 (10%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVI----------EAYASAGQGKEALRVFMRMLASGVAP 155
           +L  F ++   G  PDVV    ++          EA A  G   E   +F +M+  G+ P
Sbjct: 160 SLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGSLFDQMVEIGLTP 219

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
              T+  LI GL        ++L +A   + +MVGKG+  +  TY  +     +      
Sbjct: 220 VVITFNTLINGLCL----EGRVL-EAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKS 274

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALIDK 242
           A  LL +M+     PD   +  A+ID+
Sbjct: 275 ALNLLSKMEETHIKPD-VVIYSAIIDR 300



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/160 (21%), Positives = 61/160 (38%), Gaps = 21/160 (13%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A  LF ++   G  PD +    ++  +    + +EAL +F  +  S +  +   Y ++I 
Sbjct: 481 AQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIH 540

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G+   +      + +A      +   G+ P+  TY  +   F     + +A  L  +MK 
Sbjct: 541 GMCKGSK-----VDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKD 595

Query: 226 KGFVPDEK--------AVKEALIDK--------RGQGFRG 249
            G  PD           +K   IDK        R  GF G
Sbjct: 596 NGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSG 635


>gi|357444525|ref|XP_003592540.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481588|gb|AES62791.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 507

 Score = 83.2 bits (204), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 93/198 (46%), Gaps = 13/198 (6%)

Query: 50  KSKLPPPYDPFKKVVD---EEPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEA 106
           K  L P    F K++D   +        QE+F KMR   L  N +K +  L +     + 
Sbjct: 182 KYGLKPQISDFNKLIDVLCKSKFHVEKAQELFDKMRQWNLEPN-LKSYTILIEGWSQQQN 240

Query: 107 L----QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAV 162
           L    ++  ++KD G  PDVV +  +I AY  A +  EA+ ++  ML+  V P+ + Y  
Sbjct: 241 LLKVDEVCREMKDDGFQPDVVTYGIIINAYCKAKKYDEAIGIYHDMLSKNVNPSPHIYCT 300

Query: 163 LIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
            I GL     GN   + +A ++  +    G  P A TY AV  A+  + ++D+A  ++ +
Sbjct: 301 FITGL-----GNGSRMDEAFEFFEKSKASGFPPEAPTYNAVVSAYCWSMRIDDAYRIVGE 355

Query: 223 MKAKGFVPDEKAVKEALI 240
           MK  G  P+ +     L+
Sbjct: 356 MKELGIGPNARTYDIILV 373



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 58/127 (45%), Gaps = 6/127 (4%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA + F + K  G  P+   + AV+ AY  + +  +A R+   M   G+ PNA TY +++
Sbjct: 313 EAFEFFEKSKASGFPPEAPTYNAVVSAYCWSMRIDDAYRIVGEMKELGIGPNARTYDIIL 372

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGK-GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
             L     G  K   +A      M  + G  P+  TY  +   F    ++D A  +  +M
Sbjct: 373 VHLIKG--GRTK---EAYSVFQRMSSETGCEPSVSTYAIMVRMFCNENQLDMAMVVWNEM 427

Query: 224 KAKGFVP 230
           K KG +P
Sbjct: 428 KDKGILP 434



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 68/161 (42%), Gaps = 13/161 (8%)

Query: 76  EIFHKMRTEGL-----TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           E F K +  G      T NAV    A        +A ++  ++K+ G  P+   +  ++ 
Sbjct: 316 EFFEKSKASGFPPEAPTYNAV--VSAYCWSMRIDDAYRIVGEMKELGIGPNARTYDIILV 373

Query: 131 AYASAGQGKEALRVFMRMLA-SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
                G+ KEA  VF RM + +G  P+  TYA++++        N   L  A     EM 
Sbjct: 374 HLIKGGRTKEAYSVFQRMSSETGCEPSVSTYAIMVRMFC-----NENQLDMAMVVWNEMK 428

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
            KG+ P    ++ +  +     K+D+A    QQM   G  P
Sbjct: 429 DKGILPGIHMFSTLIISLCHENKLDDACRYFQQMLDVGIRP 469



 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 79/185 (42%), Gaps = 23/185 (12%)

Query: 51  SKLPPPYDPFKKVVDEEPTDPR--NLQEIFHKMRTEGLTNNAVKMFDA----LSKDGLTH 104
           S  PP    +  VV       R  +   I  +M+  G+  NA + +D     L K G T 
Sbjct: 324 SGFPPEAPTYNAVVSAYCWSMRIDDAYRIVGEMKELGIGPNA-RTYDIILVHLIKGGRTK 382

Query: 105 EALQLFAQIK-DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
           EA  +F ++  + G  P V  +  ++  + +  Q   A+ V+  M   G+ P  + ++ L
Sbjct: 383 EAYSVFQRMSSETGCEPSVSTYAIMVRMFCNENQLDMAMVVWNEMKDKGILPGIHMFSTL 442

Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVR----------AQKV 213
           I  L      +   L DA +Y  +M+  G+RP A  ++A   A +           A+KV
Sbjct: 443 IISLC-----HENKLDDACRYFQQMLDVGIRPTANMFSAFKRALMAAGMENTVIHFAKKV 497

Query: 214 DEARG 218
           D+ R 
Sbjct: 498 DKLRN 502


>gi|18407969|ref|NP_564822.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806279|sp|Q9SH60.2|PP103_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64100
 gi|332196071|gb|AEE34192.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 666

 Score = 83.2 bits (204), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 92/184 (50%), Gaps = 10/184 (5%)

Query: 53  LPPPYDPFKKVVDEEPTDPRNLQE--IFHKMRTEGLTNNAVK---MFDALSKDGLTHEAL 107
           L P    F  +++    + R L+   + +KM  +GL  + V    + + + K G T  AL
Sbjct: 222 LTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSAL 281

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
            L +++++    PDVV ++A+I+     G   +A  +F  ML  G+APN +TY  +I G 
Sbjct: 282 NLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGF 341

Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
            +    +     DAQ+ L +M+ + + P+  T+ A+  A V+  K+ EA  L  +M  + 
Sbjct: 342 CSFGRWS-----DAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRC 396

Query: 228 FVPD 231
             PD
Sbjct: 397 IFPD 400



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 75/165 (45%), Gaps = 8/165 (4%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           Q++F +M + G+  + +    +     ++    EAL+LF  I+      D VA+  +I  
Sbjct: 487 QDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHG 546

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
                +  EA  +F  +   GV P+  TY V+I G    +      + DA     +M   
Sbjct: 547 MCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKS-----AISDANVLFHKMKDN 601

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK 236
           G  P+  TY  +    ++A ++D++  L+ +M++ GF  D   +K
Sbjct: 602 GHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIK 646



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 89/225 (39%), Gaps = 36/225 (16%)

Query: 43  TKKYVNTKSKLP-----PPYDPFKKVVDEEPTDPR--NLQEIFHKMRTEGLTNNAVK--- 92
           TK  +N  SK+      P    +  ++D    D    + Q +F +M  +G+  N      
Sbjct: 277 TKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNC 336

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M D     G   +A +L   + ++   PDV+   A+I A    G+  EA ++   ML   
Sbjct: 337 MIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRC 396

Query: 153 VAPNAYTYAVLIKG---------------LAAAAD-----------GNAKILGDAQKYLM 186
           + P+  TY  +I G               L A+ D             AK + +  + L 
Sbjct: 397 IFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLR 456

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           E+  +G+  N  TY  +   F     ++ A+ L Q+M + G  PD
Sbjct: 457 EISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPD 501



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 11/119 (9%)

Query: 112 QIKDKGHM------PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           +  D  HM      PDVV    +I+ Y  A +  E +++   +   G+  N  TY  LI 
Sbjct: 416 RFDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIH 475

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           G     + NA     AQ    EM+  G+ P+  T   +   F   +K++EA  L + ++
Sbjct: 476 GFCEVDNLNA-----AQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQ 529



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/160 (21%), Positives = 61/160 (38%), Gaps = 21/160 (13%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A  LF ++   G  PD +    ++  +    + +EAL +F  +  S +  +   Y ++I 
Sbjct: 486 AQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIH 545

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G+   +      + +A      +   G+ P+  TY  +   F     + +A  L  +MK 
Sbjct: 546 GMCKGSK-----VDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKD 600

Query: 226 KGFVPDEK--------AVKEALIDK--------RGQGFRG 249
            G  PD           +K   IDK        R  GF G
Sbjct: 601 NGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSG 640



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 62/152 (40%), Gaps = 21/152 (13%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG------------- 152
           +L  F ++   G  PDVV    ++       +  EAL +F  M+ +G             
Sbjct: 160 SLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLEAVALFDQMVE 219

Query: 153 --VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
             + P   T+  LI GL        ++L +A   + +MVGKG+  +  TY  +     + 
Sbjct: 220 IGLTPVVITFNTLINGLCL----EGRVL-EAAALVNKMVGKGLHIDVVTYGTIVNGMCKM 274

Query: 211 QKVDEARGLLQQMKAKGFVPDEKAVKEALIDK 242
                A  LL +M+     PD   +  A+ID+
Sbjct: 275 GDTKSALNLLSKMEETHIKPD-VVIYSAIIDR 305


>gi|147862837|emb|CAN78368.1| hypothetical protein VITISV_028672 [Vitis vinifera]
          Length = 927

 Score = 83.2 bits (204), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 73/136 (53%), Gaps = 6/136 (4%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA + + ++ DKG  PD++AH  ++E      +  +A+++F  M A G +PN  TY +LI
Sbjct: 390 EAGRTWNEMIDKGFKPDIIAHHTMLEGLLKCKKKSDAIKLFEVMKAKGPSPNVRTYTILI 449

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           + L          + +A +Y  EMV  G +P+A  YT +   F   +K+D+   LL++MK
Sbjct: 450 RDLCKQMK-----MKEAVEYFDEMVDSGCQPDAAVYTCLITGFGNQKKMDKVYALLKEMK 504

Query: 225 AKGFVPDEKAVKEALI 240
            KG  P +     ALI
Sbjct: 505 EKG-CPADGRTYNALI 519



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 63/138 (45%), Gaps = 5/138 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M + L K     +A++LF  +K KG  P+V  +T +I       + KEA+  F  M+ SG
Sbjct: 413 MLEGLLKCKKKSDAIKLFEVMKAKGPSPNVRTYTILIRDLCKQMKMKEAVEYFDEMVDSG 472

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+A  Y  LI G      GN K +      L EM  KG   +  TY A+ +     Q 
Sbjct: 473 CQPDAAVYTCLITGF-----GNQKKMDKVYALLKEMKEKGCPADGRTYNALIKLMTNRQM 527

Query: 213 VDEARGLLQQMKAKGFVP 230
            D+A  + ++M   G  P
Sbjct: 528 PDDAVRIYKKMIQNGIQP 545



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 6/106 (5%)

Query: 126 TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185
             +++    A  GKEA  +F + L     PN  TY VL+ G         K L +A +  
Sbjct: 342 NCLLDNLGRAKLGKEAQALFEK-LEDRFTPNLRTYTVLLNGWC-----RIKNLVEAGRTW 395

Query: 186 MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            EM+ KG +P+   +  + E  ++ +K  +A  L + MKAKG  P+
Sbjct: 396 NEMIDKGFKPDIIAHHTMLEGLLKCKKKSDAIKLFEVMKAKGPSPN 441



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 30/149 (20%)

Query: 109 LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK--- 165
           L  ++K+KG   D   + A+I+   +     +A+R++ +M+ +G+ P  +TY +++K   
Sbjct: 499 LLKEMKEKGCPADGRTYNALIKLMTNRQMPDDAVRIYKKMIQNGIQPTLHTYNMMMKSYF 558

Query: 166 -------GLA---------AAADGNAKIL-----------GDAQKYLMEMVGKGMRPNAG 198
                  G A            D N+ I+            +A +YL EM+ KGM+    
Sbjct: 559 YTRNYEMGCAVWKEMGRKGCCPDDNSYIVFIGGLIRHGRSEEACRYLEEMIEKGMKAPQL 618

Query: 199 TYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
            Y      F RA K D    L ++MK +G
Sbjct: 619 DYNKFAADFSRAGKPDILEELARKMKFEG 647


>gi|78708657|gb|ABB47632.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1080

 Score = 83.2 bits (204), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 99/213 (46%), Gaps = 34/213 (15%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D +++ EI++ M+ +G  +N V    + DAL + G   EAL++F ++K KG +P+  ++ 
Sbjct: 315 DSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYN 374

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD-------------- 172
           ++I  +  A +  +AL +F  M   G  PN YT+ + I     + +              
Sbjct: 375 SLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSK 434

Query: 173 --------GNAKI--------LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
                   GNA +        LG A++   E+   G+ P+  TYT + +   +A K DEA
Sbjct: 435 GIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEA 494

Query: 217 RGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRG 249
             +   M     VPD  AV  +LID   +  RG
Sbjct: 495 VKIFYDMIENNCVPDVLAVN-SLIDTLYKAGRG 526



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 78/160 (48%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +FH+++  G++ + +    M    SK     EA+++F  + +   +PDV+A  ++I+ 
Sbjct: 460 KRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDT 519

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              AG+G EA R+F ++    + P   TY  L+ GL    +G  K   +    L EM   
Sbjct: 520 LYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGL--GREGKVK---EVMHLLEEMYHS 574

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              PN  TY  + +   +   V++A  +L  M  KG +PD
Sbjct: 575 NYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPD 614



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 79/160 (49%), Gaps = 8/160 (5%)

Query: 75   QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            + +F++M   G   N      + +     G T +   LF  + D+G  PD+ ++T +I+ 
Sbjct: 880  ENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDT 939

Query: 132  YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               AGQ  + L  F ++L  G+ P+  TY +LI GL     G +K L +A     EM  K
Sbjct: 940  LCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGL-----GKSKRLEEAVSLFNEMQKK 994

Query: 192  GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            G+ PN  TY ++     +A K  EA  + +++  KG+ P+
Sbjct: 995  GIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPN 1034



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 76/159 (47%), Gaps = 10/159 (6%)

Query: 77   IFHKMRTEGLTNNAVKMF----DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
            +F  M  +G+ N  +K +    D L K G  ++ L  F Q+ + G  PD++ +  +I+  
Sbjct: 917  LFQDMVDQGI-NPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGL 975

Query: 133  ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              + + +EA+ +F  M   G+ PN YTY  LI  L     G A    +A K   E++ KG
Sbjct: 976  GKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHL-----GKAGKAAEAGKMYEELLTKG 1030

Query: 193  MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             +PN  TY A+   +  +   D A     +M   G +P+
Sbjct: 1031 WKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPN 1069



 Score = 70.1 bits (170), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 5/141 (3%)

Query: 91  VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           + + D    +G +   ++++  +K  G+  +VVA+TAVI+A    G+  EAL +F  M  
Sbjct: 304 ITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQ 363

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
            G+ P  Y+Y  LI G        A   GDA +    M   G +PN  T+      + ++
Sbjct: 364 KGIVPEQYSYNSLISGFL-----KADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKS 418

Query: 211 QKVDEARGLLQQMKAKGFVPD 231
            +  +A    + MK+KG VPD
Sbjct: 419 GESIKAIQRYELMKSKGIVPD 439



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 63/128 (49%), Gaps = 5/128 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA ++ A+++++G  PDV+ HT +I+    AG+  +A  VF +M  S   P+  TY  L+
Sbjct: 248 EAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLL 307

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
                  D  +       +    M   G   N   YTAV +A  +  +V EA  +  +MK
Sbjct: 308 DKFGDNGDSQS-----VMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMK 362

Query: 225 AKGFVPDE 232
            KG VP++
Sbjct: 363 QKGIVPEQ 370



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 76/160 (47%), Gaps = 8/160 (5%)

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F  M   G   N    V   +   K G + +A+Q +  +K KG +PDVVA  AV+   
Sbjct: 391 ELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGL 450

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           A +G+   A RVF  + A GV+P+  TY ++IK  + A+        +A K   +M+   
Sbjct: 451 AKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASK-----FDEAVKIFYDMIENN 505

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
             P+     ++ +   +A + DEA  +  Q+K     P +
Sbjct: 506 CVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTD 545



 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 77/158 (48%), Gaps = 8/158 (5%)

Query: 87  TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFM 146
           T N +  F  L K G   EAL+++  +   G +P V  ++ ++ A+      +  L +  
Sbjct: 162 TYNGLVYF--LVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLR 219

Query: 147 RMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEA 206
            M A GV PN Y+Y + I+ L     G AK   +A + L +M  +G +P+  T+T + + 
Sbjct: 220 EMEAHGVKPNVYSYTICIRVL-----GQAKRFDEAYRILAKMENEGCKPDVITHTVLIQV 274

Query: 207 FVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRG 244
              A ++ +A+ +  +MK     PD +     L+DK G
Sbjct: 275 LCDAGRISDAKDVFWKMKKSDQKPD-RVTYITLLDKFG 311



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 8/162 (4%)

Query: 73  NLQEIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           ++ E+F  M+ + +  N      +F  L  +G    A      +K+ G + +   +  ++
Sbjct: 108 DMAEVFDVMQRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLV 167

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
                +G  +EAL V+  M+  GV P+  TY+VL+      A G  + +      L EM 
Sbjct: 168 YFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLM-----VAFGKRRDVETVLWLLREME 222

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             G++PN  +YT       +A++ DEA  +L +M+ +G  PD
Sbjct: 223 AHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPD 264



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 55/108 (50%), Gaps = 5/108 (4%)

Query: 93   MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
            + D L K     EA+ LF +++ KG +P++  + ++I     AG+  EA +++  +L  G
Sbjct: 971  LIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKG 1030

Query: 153  VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTY 200
              PN +TY  LI+G + +   ++     A      M+  G  PN+ TY
Sbjct: 1031 WKPNVFTYNALIRGYSVSGSTDS-----AYAAYGRMIVGGCLPNSSTY 1073



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 76/175 (43%), Gaps = 10/175 (5%)

Query: 63  VVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM 119
           +VDE   D    + +F +M+  G   +      + DA+ K     E L++  ++  KG+ 
Sbjct: 765 LVDENLIDIA--EGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYE 822

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
              V +  +I     + + ++A+ ++  +++ G +P   TY  L+ GL  A       + 
Sbjct: 823 STYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGR-----IE 877

Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
           DA+    EM+  G + N   Y  +      A   ++   L Q M  +G  PD K+
Sbjct: 878 DAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKS 932



 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 3/90 (3%)

Query: 77   IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
            +F++M+ +G+  N      +   L K G   EA +++ ++  KG  P+V  + A+I  Y+
Sbjct: 987  LFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRGYS 1046

Query: 134  SAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
             +G    A   + RM+  G  PN+ TY  L
Sbjct: 1047 VSGSTDSAYAAYGRMIVGGCLPNSSTYMQL 1076



 Score = 41.2 bits (95), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 3/76 (3%)

Query: 74  LQEIFHKMRTEGL-TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           L+E++H      L T N +   D L K+G  ++AL +   +  KG +PD+ ++  VI   
Sbjct: 568 LEEMYHSNYPPNLITYNTI--LDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGL 625

Query: 133 ASAGQGKEALRVFMRM 148
               +  EA  +F +M
Sbjct: 626 VKEERYNEAFSIFCQM 641


>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
          Length = 748

 Score = 83.2 bits (204), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 69/136 (50%), Gaps = 5/136 (3%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L + G   EA +LF ++  K   PD V +TA+I+ Y   G+ KEA  +  +ML  G+ P
Sbjct: 402 GLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTP 461

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           N  TY  L  GL    + +      A + L EM  KG+  N  TY ++     +A  +D+
Sbjct: 462 NIVTYTALADGLCKCGEVDT-----ANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQ 516

Query: 216 ARGLLQQMKAKGFVPD 231
           A  L++ M+  GF PD
Sbjct: 517 AVKLMKDMEVAGFHPD 532



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 70/136 (51%), Gaps = 5/136 (3%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
           +L + G   EA QL  Q++ +G +PDV++++ VI  Y   G+ +  L++   M   G+ P
Sbjct: 262 SLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVINGYCQVGELQRVLKLIEEMQIKGLKP 321

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           N YTY  +I  L          + +A++ L EM+ +G+ P+   YT + + F +   V  
Sbjct: 322 NPYTYNGVILLLCKTGK-----VAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSS 376

Query: 216 ARGLLQQMKAKGFVPD 231
           A  L  +M+ +   PD
Sbjct: 377 AYRLFDEMQKRKISPD 392



 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 89/186 (47%), Gaps = 10/186 (5%)

Query: 50  KSKLPPPYDPFKKVVDEEPTDPRNLQ--EIFHKMRTEGLTNNAVK---MFDALSKDGLTH 104
           K K+ P +  +  V+       R ++  ++FH+M  + L  + V    + D   K+G   
Sbjct: 386 KRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMK 445

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA  L  Q+   G  P++V +TA+ +     G+   A  +   M   G+  N YTY  L+
Sbjct: 446 EAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLV 505

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            GL  A  GN   +  A K + +M   G  P+A TYT + +A+ +++++  A  LL+QM 
Sbjct: 506 NGLCKA--GN---IDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQML 560

Query: 225 AKGFVP 230
            +   P
Sbjct: 561 DRELQP 566



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 78/160 (48%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            E+ H+M  +GL  N      + + L K G   +A++L   ++  G  PD V +T +++A
Sbjct: 483 NELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDA 542

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y  + +   A  +  +ML   + P   T+ VL+ G   +      +L D +K L  M+ K
Sbjct: 543 YCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSG-----MLEDGEKLLKWMLEK 597

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G+ PNA TY ++ + +     +     + + M AKG VPD
Sbjct: 598 GIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPD 637



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 69/141 (48%), Gaps = 5/141 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +     G+  +  +L   + +KG MP+   + ++I+ Y      +    ++  M A G
Sbjct: 574 LMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKG 633

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V P+  TY +LIKG   A +     + +A     +MVGKG      +Y A+ + F + +K
Sbjct: 634 VVPDGNTYNILIKGHCKARN-----MKEAWFLHRDMVGKGFNLTVSSYNALIKGFYKRKK 688

Query: 213 VDEARGLLQQMKAKGFVPDEK 233
             EAR L +QM+ +G V D +
Sbjct: 689 FLEARELFEQMRREGLVADRE 709



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 77/161 (47%), Gaps = 12/161 (7%)

Query: 76  EIFHKMRTEGL-----TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           ++  +M+ +GL     T N V +   L K G   EA ++  ++  +G  PD V +T +I+
Sbjct: 309 KLIEEMQIKGLKPNPYTYNGVILL--LCKTGKVAEAERVLREMISEGIAPDGVIYTTLID 366

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
            +   G    A R+F  M    ++P+  TY  +I GL          + +A K   EMV 
Sbjct: 367 GFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGR-----VMEADKLFHEMVC 421

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           K + P+  TYTA+ + + +  K+ EA  L  QM   G  P+
Sbjct: 422 KRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPN 462



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 6/128 (4%)

Query: 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
           H   QL    KD G  P V       +    AG   EA ++F +ML  G+  +  +  + 
Sbjct: 166 HFVEQLIYTYKDWGSDPRVF--DIFFQVLVEAGMLDEARKLFDKMLNYGLLISVDSCNLF 223

Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           I  L+   DG  KI   A K  +E    G+  N  +Y  +  +  +  +V EA  LL QM
Sbjct: 224 ISHLSEDLDG-IKI---ALKVFVEFPEVGVCWNTASYNIITHSLCQLGRVVEAHQLLLQM 279

Query: 224 KAKGFVPD 231
           + +G +PD
Sbjct: 280 ELRGCIPD 287


>gi|449469288|ref|XP_004152353.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Cucumis sativus]
          Length = 529

 Score = 83.2 bits (204), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 88/161 (54%), Gaps = 11/161 (6%)

Query: 75  QEIFHKMRTEGLTNNAVKMFDALSKD----GLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           Q+ F K+++  + N +VK +  L++     G ++ A ++F +++++G + DV+A+ +++E
Sbjct: 206 QQFFDKVKS--VFNPSVKTYSILTRGWGVVGDSNNAQKVFDEMRERGCLIDVLAYNSLLE 263

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
           A    G+  EA ++F+ M ++GV P+A TY++ I+      D     L    + L     
Sbjct: 264 ALCKGGKRDEAYKMFLEMDSNGVDPDADTYSIFIRSSCQEND-----LHTVYRVLERTKR 318

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           K + PN  TY  V +   + Q V+EA  +L +M  +G  PD
Sbjct: 319 KNLLPNVFTYNCVIKKLCKDQNVEEAYQILDEMIERGVTPD 359



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 10/161 (6%)

Query: 97  LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
           L KD    EA Q+  ++ ++G  PD  ++ A+   +    +   AL +  RM      P+
Sbjct: 335 LCKDQNVEEAYQILDEMIERGVTPDTWSYNAIQAYHCDHSEVNSALNLVKRMDRDKCVPD 394

Query: 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK-GMRPNAGTYTAVFEAFVRAQ-KVD 214
            +TY +++K L            D    + E +GK G  P+  TY  +   F + + K++
Sbjct: 395 KHTYNMVLKLLVRVGR------FDRANEVWESMGKRGFYPSVSTYAVMIHGFCKKKWKLE 448

Query: 215 EARGLLQQMKAKGFVPDEKAVKEALIDK-RGQGFRGVINIL 254
           EA    + M  +G +P   A  E L D+  G GF+  + IL
Sbjct: 449 EACKYFEMMIDEG-IPPYIATVELLRDRLLGIGFKDQVAIL 488



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/199 (21%), Positives = 74/199 (37%), Gaps = 43/199 (21%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQI------------- 113
           D  N Q++F +MR  G   + +    + +AL K G   EA ++F ++             
Sbjct: 235 DSNNAQKVFDEMRERGCLIDVLAYNSLLEALCKGGKRDEAYKMFLEMDSNGVDPDADTYS 294

Query: 114 ----------------------KDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
                                 K K  +P+V  +  VI+        +EA ++   M+  
Sbjct: 295 IFIRSSCQENDLHTVYRVLERTKRKNLLPNVFTYNCVIKKLCKDQNVEEAYQILDEMIER 354

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           GV P+ ++Y  +      A   +   +  A   +  M      P+  TY  V +  VR  
Sbjct: 355 GVTPDTWSYNAI-----QAYHCDHSEVNSALNLVKRMDRDKCVPDKHTYNMVLKLLVRVG 409

Query: 212 KVDEARGLLQQMKAKGFVP 230
           + D A  + + M  +GF P
Sbjct: 410 RFDRANEVWESMGKRGFYP 428


>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 667

 Score = 83.2 bits (204), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 81/165 (49%), Gaps = 8/165 (4%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+F +M + G+  + +    + D L  +G   +AL++F  ++      D+V +T +IE 
Sbjct: 400 EELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEG 459

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G+ ++A  +F  +   GV PN  TY V+I GL          L +A   L +M   
Sbjct: 460 MCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGS-----LSEANILLRKMEED 514

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK 236
           G  PN  TY  +  A +R   +  +  L+++MK+ GF  D  ++K
Sbjct: 515 GNEPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIK 559



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 79/158 (50%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M T+G+ ++ V    +   L K G  ++ +QL   +  +  +P+V+    +I+ + 
Sbjct: 227 LFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFV 286

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G+ +EA  ++  M+  G++PN  TY  L+ G           L +A   L  MV    
Sbjct: 287 KEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNR-----LSEANNMLDLMVRNNC 341

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            P+  T+T++ + + + ++VDE   L +++  +G V +
Sbjct: 342 SPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVAN 379



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 66/139 (47%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D+L +DG    A+ LF +++ KG    +V + +++     AG+  + +++   M +  
Sbjct: 211 IIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRK 270

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN  T+ VLI             L +A +   EM+ KG+ PN  TY ++ + +    +
Sbjct: 271 IIPNVITFNVLIDVFVKEGK-----LQEANELYKEMITKGISPNTITYNSLMDGYCMQNR 325

Query: 213 VDEARGLLQQMKAKGFVPD 231
           + EA  +L  M      PD
Sbjct: 326 LSEANNMLDLMVRNNCSPD 344



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 70/139 (50%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   K+G   EA +L+ ++  KG  P+ + + ++++ Y    +  EA  +   M+ + 
Sbjct: 281 LIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNN 340

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            +P+  T+  LIKG         K + +  K   ++  +G+  N  TY+ + + F ++ K
Sbjct: 341 CSPDIVTFTSLIKGYC-----KVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGK 395

Query: 213 VDEARGLLQQMKAKGFVPD 231
           ++ A  L Q+M + G +PD
Sbjct: 396 LEIAEELFQEMVSLGVLPD 414



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 86/182 (47%), Gaps = 12/182 (6%)

Query: 49  TKSKLPPPYDPFKKVVDEEPTDPRNLQE---IFHKMRTEGLTNNAV---KMFDALSKDGL 102
           T  K+ P    F  ++D    + + LQE   ++ +M T+G++ N +    + D       
Sbjct: 267 TSRKIIPNVITFNVLIDVFVKEGK-LQEANELYKEMITKGISPNTITYNSLMDGYCMQNR 325

Query: 103 THEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAV 162
             EA  +   +      PD+V  T++I+ Y    +  E +++F ++   G+  N  TY++
Sbjct: 326 LSEANNMLDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSI 385

Query: 163 LIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
           L++G   +  G  +I   A++   EMV  G+ P+  TY  + +      K+++A  + + 
Sbjct: 386 LVQGFCQS--GKLEI---AEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFED 440

Query: 223 MK 224
           ++
Sbjct: 441 LQ 442



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/156 (21%), Positives = 67/156 (42%), Gaps = 8/156 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +   KM   G+ +N      M +   +   T  A  +  ++   G+ PD      +I   
Sbjct: 86  DFCKKMELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGL 145

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               +  EA+ +  RM+ +G  PN  TY  ++ G+  + D +      A   L +M  + 
Sbjct: 146 CLESKVSEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSL-----ALDLLRKMDERN 200

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
           ++ +  TY+ + ++  R   +D A  L ++M+ KG 
Sbjct: 201 VKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGI 236



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 65/139 (46%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L  +    EA+ L A++ + G  P+VV + +++     +G    AL +  +M    
Sbjct: 141 LINGLCLESKVSEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERN 200

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V  + +TY+ +I  L      +A I         EM  KG++ +  TY ++     +A K
Sbjct: 201 VKADVFTYSTIIDSLCRDGCIDAAI-----SLFKEMETKGIKSSLVTYNSLVGGLCKAGK 255

Query: 213 VDEARGLLQQMKAKGFVPD 231
            ++   LL+ M ++  +P+
Sbjct: 256 WNDGVQLLKDMTSRKIIPN 274


>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
 gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
          Length = 573

 Score = 83.2 bits (204), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 75/140 (53%), Gaps = 7/140 (5%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   K G   +A+++   ++ +  +P+VV +++++     AG   +AL +F RM + G
Sbjct: 190 LIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKG 249

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM-EMVGKGMRPNAGTYTAVFEAFVRAQ 211
             PN  TY  LI GL AA     K+  DA + LM EM      P+  +Y A+ + + R  
Sbjct: 250 CVPNVVTYTTLIHGLCAA----HKV--DAARLLMDEMTATCCPPDTVSYNALLDGYCRLG 303

Query: 212 KVDEARGLLQQMKAKGFVPD 231
           +++EA+ L ++M  K  +PD
Sbjct: 304 RIEEAKQLFKEMATKSCLPD 323



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 90/200 (45%), Gaps = 14/200 (7%)

Query: 49  TKSKLPPPYDPFKKVVDEEPTDPR--NLQEIFHKMRTEGLTNNAVKMFDALSKDGL---- 102
           T+  + P    +  VVD    D +     E+  +M+ +G+  +    F AL         
Sbjct: 105 TRDGIAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFT-FSALITGWCNARK 163

Query: 103 THEALQLFAQI-KDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYA 161
             EAL+L+ +I       PDVV +TA+I+ +  +G  ++A+++   M      PN  TY+
Sbjct: 164 VDEALKLYKEILTSSSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYS 223

Query: 162 VLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221
            L+ GL  A D     L  A      M  KG  PN  TYT +      A KVD AR L+ 
Sbjct: 224 SLLHGLCKAGD-----LDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMD 278

Query: 222 QMKAKGFVPDEKAVKEALID 241
           +M A    PD  +   AL+D
Sbjct: 279 EMTATCCPPDTVSYN-ALLD 297



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/111 (38%), Positives = 57/111 (51%), Gaps = 5/111 (4%)

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
           PDVV ++ V+  Y+ A +  EA      M+A  VAPNA TY+ LI GL  A       + 
Sbjct: 358 PDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGR-----VD 412

Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
            A + L  MV K + P+ GT+ +V  A  R   +DEA  LL  M A G  P
Sbjct: 413 HAMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEP 463



 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 85/172 (49%), Gaps = 15/172 (8%)

Query: 77  IFHKMRT----EGLTNNAVKMFDALSKDGLTHEALQLFAQIKD-KGHMPDVVAHTAVIEA 131
            F KMR        T N V   + L K  LT +A ++  +++D K   PD+V ++ VI  
Sbjct: 29  CFEKMREFVAPNERTYNVV--VNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVING 86

Query: 132 YASAGQGKEALRVFMRMLA-SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
           +   G+   A  +   M+   G+AP+  TY  ++ GL    DG    +  A + + EM  
Sbjct: 87  FCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDGLCR--DGK---MDRACEMVREMKL 141

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ-MKAKGFVPDEKAVKEALID 241
           KG+ P+  T++A+   +  A+KVDEA  L ++ + +  + PD      ALID
Sbjct: 142 KGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWKPD-VVTYTALID 192



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 78/170 (45%), Gaps = 10/170 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F +M ++G   N V    +   L        A  L  ++      PD V++ A+++ Y
Sbjct: 240 DLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGY 299

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM-VGK 191
              G+ +EA ++F  M      P+  TY  L++G       NA  L +A+  L  M    
Sbjct: 300 CRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFC-----NASRLEEARFLLENMKTAA 354

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           G+ P+  TY+ V   + RA++  EA   +Q+M A+   P+      +LID
Sbjct: 355 GIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPN-AVTYSSLID 403



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 71/141 (50%), Gaps = 7/141 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDK-GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
           + +   K G    A ++  ++  + G  PDVV +T+V++     G+   A  +   M   
Sbjct: 83  VINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLK 142

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV-GKGMRPNAGTYTAVFEAFVRA 210
           GV P+ +T++ LI G       NA+ + +A K   E++     +P+  TYTA+ + F ++
Sbjct: 143 GVEPDKFTFSALITGWC-----NARKVDEALKLYKEILTSSSWKPDVVTYTALIDGFCKS 197

Query: 211 QKVDEARGLLQQMKAKGFVPD 231
             +++A  +L  M+ +  VP+
Sbjct: 198 GNLEKAMKMLGVMEGRKCVPN 218



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 66/145 (45%), Gaps = 33/145 (22%)

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA-------- 171
           P VV  T +I+ +  A Q K+AL  F +M    VAPN  TY V++ GL  A         
Sbjct: 5   PTVVTWTIIIDGFCKANQLKQALACFEKM-REFVAPNERTYNVVVNGLCKARLTSKAYEV 63

Query: 172 -----DGNAKI------------------LGDAQKYLMEMVGK-GMRPNAGTYTAVFEAF 207
                DG +                    +  A + L EMV + G+ P+  TYT+V +  
Sbjct: 64  LKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDGL 123

Query: 208 VRAQKVDEARGLLQQMKAKGFVPDE 232
            R  K+D A  ++++MK KG  PD+
Sbjct: 124 CRDGKMDRACEMVREMKLKGVEPDK 148



 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 36/166 (21%), Positives = 74/166 (44%), Gaps = 11/166 (6%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E   +M    +  NAV    + D L K G    A+++   + +K   P V    +VI A 
Sbjct: 381 EFIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGAL 440

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL-----ME 187
              G   EA ++ + M A G+ P   TY  L++G +    G  +I  +  + +       
Sbjct: 441 CRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRT--GRMEIAYELFEVMRKKAKKS 498

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK 233
                + P    ++A+     +A+++D+A  ++++++++   P E+
Sbjct: 499 SSAANLVPEQA-FSALIRGLCKAREIDKAMAVVEELRSRECEPAEE 543


>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
           thaliana]
          Length = 1184

 Score = 83.2 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 51/165 (30%), Positives = 80/165 (48%), Gaps = 8/165 (4%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D R   + F++M +  +T + +    +     + G   EA +LF ++  KG  PD V  T
Sbjct: 809 DIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFT 868

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
            +I  Y  AG  K+A RV   M+ +G +PN  TY  LI GL    D     L  A + L 
Sbjct: 869 ELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGD-----LDSANELLH 923

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           EM   G++PN  TY ++     ++  ++EA  L+ + +A G   D
Sbjct: 924 EMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNAD 968



 Score = 77.0 bits (188), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 46/167 (27%), Positives = 80/167 (47%), Gaps = 8/167 (4%)

Query: 70   DPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
            D  +  E+ H+M   GL  N      + + L K G   EA++L  + +  G   D V +T
Sbjct: 914  DLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYT 973

Query: 127  AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
             +++AY  +G+  +A  +   ML  G+ P   T+ VL+ G          +L D +K L 
Sbjct: 974  TLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHG-----MLEDGEKLLN 1028

Query: 187  EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK 233
             M+ KG+ PNA T+ ++ + +     +  A  + + M ++G  PD K
Sbjct: 1029 WMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGK 1075



 Score = 73.9 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E F +M  +G+  + V    + D   K G    A + F ++  +   PDV+ +TA+I  
Sbjct: 779 EEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISG 838

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +   G   EA ++F  M   G+ P++ T+  LI G   A  G+ K   DA +    M+  
Sbjct: 839 FCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKA--GHMK---DAFRVHNHMIQA 893

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G  PN  TYT + +   +   +D A  LL +M   G  P+
Sbjct: 894 GCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPN 933



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 46/177 (25%), Positives = 81/177 (45%), Gaps = 9/177 (5%)

Query: 75   QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            QEI  +M  +GL    V    + +     G+  +  +L   +  KG  P+     ++++ 
Sbjct: 989  QEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQ 1048

Query: 132  YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
            Y      K A  ++  M + GV P+  TY  L+KG   A +     + +A     EM GK
Sbjct: 1049 YCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARN-----MKEAWFLFQEMKGK 1103

Query: 192  GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFR 248
            G   +  TY+ + + F++ +K  EAR +  QM+ +G   D K + +   D + +G R
Sbjct: 1104 GFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAAD-KEIFDFFSDTKYKGKR 1159



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 74/158 (46%), Gaps = 8/158 (5%)

Query: 77   IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
            + + M   G + N V    + D L K+G    A +L  ++   G  P++  + +++    
Sbjct: 886  VHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLC 945

Query: 134  SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             +G  +EA+++     A+G+  +  TY  L+     + +     +  AQ+ L EM+GKG+
Sbjct: 946  KSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGE-----MDKAQEILKEMLGKGL 1000

Query: 194  RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +P   T+  +   F     +++   LL  M AKG  P+
Sbjct: 1001 QPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPN 1038



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 5/131 (3%)

Query: 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
           G   EA  L   ++ KG+ PDV++++ V+  Y   G+  +  ++   M   G+ PN+Y Y
Sbjct: 703 GRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIY 762

Query: 161 AVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
             +I  L          L +A++   EM+ +G+ P+   YT + + F +   +  A    
Sbjct: 763 GSIIGLLCRICK-----LAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFF 817

Query: 221 QQMKAKGFVPD 231
            +M ++   PD
Sbjct: 818 YEMHSRDITPD 828



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 62/127 (48%), Gaps = 5/127 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA + F+++  +G +PD V +T +I+ +   G  + A + F  M +  + P+  TY  +I
Sbjct: 777 EAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAII 836

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            G     D     + +A K   EM  KG+ P++ T+T +   + +A  + +A  +   M 
Sbjct: 837 SGFCQIGD-----MVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMI 891

Query: 225 AKGFVPD 231
             G  P+
Sbjct: 892 QAGCSPN 898


>gi|356499705|ref|XP_003518677.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g02420-like [Glycine max]
          Length = 500

 Score = 83.2 bits (204), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 87/193 (45%), Gaps = 9/193 (4%)

Query: 46  YVNTKSKLPPPYDPFKKVVDEEPTDPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGL 102
           Y + K +  P    F  ++    T P +    F +M+  G+T + V    + D   K   
Sbjct: 194 YHSLKHRFRPNLQTFNILLSGWKT-PEDADLFFKEMKEMGVTPDVVTYNSLMDVYCKGRE 252

Query: 103 THEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAV 162
             +A ++  +++D+   PDV+ +T +I      GQ  +A  V   M   G  P+A  Y  
Sbjct: 253 IEKAYKMLDEMRDQDFSPDVITYTCIIGGLGLIGQPDKARNVLKEMKEYGCYPDAAAYNA 312

Query: 163 LIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
            I+    A     K LGDA   + EMV KG+ PNA TY   F  F  +  +  +  + Q+
Sbjct: 313 AIRNFCIA-----KRLGDAHGLVEEMVTKGLSPNATTYNLFFRVFYWSNDLQSSWNMYQR 367

Query: 223 MKAKGFVPDEKAV 235
           M  +G +P+ ++ 
Sbjct: 368 MMVEGCLPNTQSC 380



 Score = 43.5 bits (101), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 9/162 (5%)

Query: 78  FHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ 137
           F K+  E  TN    +   L ++    +A  ++  +K +   P++     ++  + +   
Sbjct: 162 FRKLVQEFDTNCFNALLRTLCQEKSMADARNVYHSLKHRFR-PNLQTFNILLSGWKTP-- 218

Query: 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA 197
            ++A   F  M   GV P+  TY  L+       +     +  A K L EM  +   P+ 
Sbjct: 219 -EDADLFFKEMKEMGVTPDVVTYNSLMDVYCKGRE-----IEKAYKMLDEMRDQDFSPDV 272

Query: 198 GTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
            TYT +        + D+AR +L++MK  G  PD  A   A+
Sbjct: 273 ITYTCIIGGLGLIGQPDKARNVLKEMKEYGCYPDAAAYNAAI 314


>gi|449484422|ref|XP_004156879.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
           mitochondrial-like [Cucumis sativus]
          Length = 529

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 88/161 (54%), Gaps = 11/161 (6%)

Query: 75  QEIFHKMRTEGLTNNAVKMFDALSKD----GLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           Q+ F K+++  + N +VK +  L++     G ++ A ++F +++++G + DV+A+ +++E
Sbjct: 206 QQFFDKVKS--VFNPSVKTYSILTRGWGVVGDSNNAQKVFDEMRERGCLIDVLAYNSLLE 263

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
           A    G+  EA ++F+ M ++GV P+A TY++ I+      D     L    + L     
Sbjct: 264 ALCKGGKRDEAYKMFLEMDSNGVDPDADTYSIFIRSSCQEND-----LHTVYRVLERTKR 318

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           K + PN  TY  V +   + Q V+EA  +L +M  +G  PD
Sbjct: 319 KNLLPNVFTYNCVIKKLCKDQNVEEAYQILDEMIERGVTPD 359



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 10/161 (6%)

Query: 97  LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
           L KD    EA Q+  ++ ++G  PD  ++ A+   +    +   AL +  RM      P+
Sbjct: 335 LCKDQNVEEAYQILDEMIERGVTPDTWSYNAIQAYHCDHSEVNSALNLVKRMDRDKCVPD 394

Query: 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK-GMRPNAGTYTAVFEAFVRAQ-KVD 214
            +TY +++K L            D    + E +GK G  P+  TY  +   F + + K++
Sbjct: 395 KHTYNMVLKLLVRVGR------FDRANEVWESMGKRGFYPSVSTYAVMIHGFCKKKWKLE 448

Query: 215 EARGLLQQMKAKGFVPDEKAVKEALIDK-RGQGFRGVINIL 254
           EA    + M  +G +P   A  E L D+  G GF+  + IL
Sbjct: 449 EACKYFEMMIDEG-IPPYIATVELLRDRLLGIGFKDQVAIL 488



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/199 (21%), Positives = 74/199 (37%), Gaps = 43/199 (21%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQI------------- 113
           D  N Q++F +MR  G   + +    + +AL K G   EA ++F ++             
Sbjct: 235 DSNNAQKVFDEMRERGCLIDVLAYNSLLEALCKGGKRDEAYKMFLEMDSNGVDPDADTYS 294

Query: 114 ----------------------KDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
                                 K K  +P+V  +  VI+        +EA ++   M+  
Sbjct: 295 IFIRSSCQENDLHTVYRVLERTKRKNLLPNVFTYNCVIKKLCKDQNVEEAYQILDEMIER 354

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           GV P+ ++Y  +      A   +   +  A   +  M      P+  TY  V +  VR  
Sbjct: 355 GVTPDTWSYNAI-----QAYHCDHSEVNSALNLVKRMDRDKCVPDKHTYNMVLKLLVRVG 409

Query: 212 KVDEARGLLQQMKAKGFVP 230
           + D A  + + M  +GF P
Sbjct: 410 RFDRANEVWESMGKRGFYP 428


>gi|357155349|ref|XP_003577091.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Brachypodium distachyon]
          Length = 877

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 69/126 (54%), Gaps = 5/126 (3%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A  L  ++ ++GH PDVV   A+I     AGQ  EAL V  +M A  + P+A  Y VLI 
Sbjct: 453 ASNLLVEMMERGHTPDVVTFGALIHGLVVAGQVSEALLVREKMAARQLLPDANIYNVLIS 512

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           GL        K+L  A+  + EM+ + + P+   YT + + F+R + +DEAR + + M+ 
Sbjct: 513 GLC-----KKKMLPAARNLIEEMLEQNVHPDKYVYTTLIDGFIRNESLDEARKIFEFMEQ 567

Query: 226 KGFVPD 231
           KG  PD
Sbjct: 568 KGIHPD 573



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   ++    EA ++F  ++ KG  PDVV + A+I+ Y   G   EA+     M   G
Sbjct: 545 LIDGFIRNESLDEARKIFEFMEQKGIHPDVVGYNAMIKGYCQFGMMNEAVECMSTMRKVG 604

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+ +TY  LI G   A  GN   +  A   L +M+ +  +PN   Y+++   + +   
Sbjct: 605 RIPDEFTYTTLIGGY--AKQGN---ISGALSLLCDMMKRRCQPNVVAYSSLINGYCKLGD 659

Query: 213 VDEARGLLQQMKAKGFVPD 231
            D A  L   M+++G  P+
Sbjct: 660 TDAAECLFGSMESQGLFPN 678



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 75/158 (47%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +M  +GL    V    +   L + G   +   L ++++++   P+V  + +VI+A  
Sbjct: 316 LLGEMEAKGLLPTVVTYGTLMSWLGRKGDLEKIASLLSEMRERRLPPNVQIYNSVIDALC 375

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
                 +AL V  +M A G  P+A T++ LI GL    +G  +   +A++ L E     +
Sbjct: 376 KCRSASQALVVLKQMFAGGCDPDAITFSTLISGL--CQEGRVQ---EAERLLRETTRWEL 430

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            PN  +YT++   F    +V  A  LL +M  +G  PD
Sbjct: 431 NPNLSSYTSLIHGFCVRGEVIVASNLLVEMMERGHTPD 468



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 70/161 (43%), Gaps = 8/161 (4%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           ++IF  M  +G+  + V    M     + G+ +EA++  + ++  G +PD   +T +I  
Sbjct: 559 RKIFEFMEQKGIHPDVVGYNAMIKGYCQFGMMNEAVECMSTMRKVGRIPDEFTYTTLIGG 618

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           YA  G    AL +   M+     PN   Y+ LI G     D +A     A+     M  +
Sbjct: 619 YAKQGNISGALSLLCDMMKRRCQPNVVAYSSLINGYCKLGDTDA-----AECLFGSMESQ 673

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           G+ PN  TYT +  +  +  KV  A    + M      P++
Sbjct: 674 GLFPNVITYTILIGSLFKKDKVVRAAMYFEYMLLNQCSPND 714



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 61/153 (39%), Gaps = 16/153 (10%)

Query: 92  KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
            + +   K G T  A  LF  ++ +G  P+V+ +T +I +     +   A   F  ML +
Sbjct: 649 SLINGYCKLGDTDAAECLFGSMESQGLFPNVITYTILIGSLFKKDKVVRAAMYFEYMLLN 708

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG-------------MRPNAG 198
             +PN YT   L+ GL    +  A I+       + + GKG               P   
Sbjct: 709 QCSPNDYTLHSLVTGL---CNSMASIISSHCSSTVNLHGKGALLDIFRALVNDRCDPRNS 765

Query: 199 TYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            Y A+  +      + EA  L  +M  KG+ PD
Sbjct: 766 AYNAIIFSLCIHNMLGEALDLKNKMANKGYKPD 798



 Score = 39.7 bits (91), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 5/91 (5%)

Query: 140 EALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGT 199
           +A +++  MLA     + Y+  V+++GL         ++    K +    G G  PNA  
Sbjct: 242 DARKLYDEMLAEESGADDYSTCVMVRGLCLEG-----LVEKGLKLIEARWGAGCVPNAVF 296

Query: 200 YTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           Y  + + + R   V     LL +M+AKG +P
Sbjct: 297 YNVLIDGYCRRGDVGRGILLLGEMEAKGLLP 327


>gi|410109893|gb|AFV61026.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           fucata]
          Length = 414

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 112/237 (47%), Gaps = 15/237 (6%)

Query: 2   AATAILRWLLHSPSPKRS-LRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPF 60
           +A+A+   +  +   +RS L + +  + A L+      + +  +  +  + K   P+D  
Sbjct: 36  SASAVFAAIFETKGTQRSDLYVFSGLITAYLESGFLRDAIECYR--LTREHKFWVPFDTC 93

Query: 61  KKVVDEEPTDPRNLQEI--FHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIK 114
           +KV+ E     +  + +  F++   E     ++  F+ L     KDG    A  +F  I 
Sbjct: 94  RKVL-EHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRIAQSVFDAIT 152

Query: 115 DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174
             G  P VV++  ++  Y   G   E  R+   MLASGV P+ YTY+VLI GL   +   
Sbjct: 153 KWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESK-- 210

Query: 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              + DA +   EM+ KG+ PN+ T+T + +   +  +VD A  + +QM ++   PD
Sbjct: 211 ---IDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 264



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 86/201 (42%), Gaps = 35/201 (17%)

Query: 63  VVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM 119
           +  E   D  N  E+F +M  +GL  N+V    + D   K+G    A++++ Q+  +   
Sbjct: 205 LCKESKIDDAN--ELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 262

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN----- 174
           PD++ +  +I      G  K+A  +   M   G+ P+  TY  LI G     D +     
Sbjct: 263 PDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKDGDLDTAFEH 322

Query: 175 -----------------AKILG--------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
                            A I G        DA+K L EM+  G++P+A TYT +   F +
Sbjct: 323 RKRMIQENTRLDDVVYTALISGLCREGXSVDAEKMLREMLSVGLKPDARTYTMIINEFCK 382

Query: 210 AQKVDEARGLLQQMKAKGFVP 230
              V +   LL++M+  G VP
Sbjct: 383 KGDVWKGSKLLKEMQRDGHVP 403


>gi|255660858|gb|ACU25598.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
          Length = 418

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/252 (25%), Positives = 107/252 (42%), Gaps = 45/252 (17%)

Query: 2   AATAILRWLLHSPSPKRS-LRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPF 60
           +A+A+   +L +   +RS + + +  + A L+      + Q  +  +  K K   P+D  
Sbjct: 47  SASAVFAAILGTKGTQRSDIYVFSGLMTAYLESGFVHDAIQCFR--LTKKHKFWVPFDTC 104

Query: 61  KKVVDE---------------------EPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSK 99
           +KV++                       P        + H+   EG    A  +FDA++K
Sbjct: 105 RKVLEHLMKLKYFKLVWDFYKEILECGYPASLYFFNIVMHRFCKEGEMRRAQSVFDAITK 164

Query: 100 DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYT 159
            GL                 P VV+   ++  Y   G   E  R+   M ASGV P+ YT
Sbjct: 165 WGLR----------------PSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYT 208

Query: 160 YAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGL 219
           Y+VLI GL   +      + +A +   EM+ +G+ PN  T+T + +   +   VD A  +
Sbjct: 209 YSVLINGLCKESK-----VDEANELFNEMLDRGLVPNGVTFTTLIDVHCKNGMVDSAMEI 263

Query: 220 LQQMKAKGFVPD 231
            +QM ++GF PD
Sbjct: 264 YKQMLSQGFSPD 275



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 85/201 (42%), Gaps = 35/201 (17%)

Query: 63  VVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM 119
           +  E   D  N  E+F++M   GL  N V    + D   K+G+   A++++ Q+  +G  
Sbjct: 216 LCKESKVDEAN--ELFNEMLDRGLVPNGVTFTTLIDVHCKNGMVDSAMEIYKQMLSQGFS 273

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD------- 172
           PD++ +  +I      G  K+   +   M  +G+ P+  TY  LI G     D       
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQVRALIDEMSMNGLKPDKITYTTLIDGCCKEGDLETAFEF 333

Query: 173 ---------------GNAKILG--------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
                            A + G        DA+K   EM+  G++P+ GTYT +   F +
Sbjct: 334 RKRMIKESIRLDNVAYTALVSGLCQEGRADDAEKMFREMLSVGLKPDNGTYTMIINEFCK 393

Query: 210 AQKVDEARGLLQQMKAKGFVP 230
              V  A  LL++M+  G VP
Sbjct: 394 KGDVRTASRLLKEMQRDGHVP 414



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 66/131 (50%), Gaps = 5/131 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K+    EA +LF ++ D+G +P+ V  T +I+ +   G    A+ ++ +ML+ G
Sbjct: 212 LINGLCKESKVDEANELFNEMLDRGLVPNGVTFTTLIDVHCKNGMVDSAMEIYKQMLSQG 271

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            +P+  TY  LI GL    D     L   +  + EM   G++P+  TYT + +   +   
Sbjct: 272 FSPDLITYNTLIYGLCKKGD-----LKQVRALIDEMSMNGLKPDKITYTTLIDGCCKEGD 326

Query: 213 VDEARGLLQQM 223
           ++ A    ++M
Sbjct: 327 LETAFEFRKRM 337


>gi|242035429|ref|XP_002465109.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
 gi|241918963|gb|EER92107.1| hypothetical protein SORBIDRAFT_01g032160 [Sorghum bicolor]
          Length = 1153

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 99/213 (46%), Gaps = 34/213 (15%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D +++ EI++ M  +G  +N V    + DAL + G   EAL +F ++K+KG  P+  ++ 
Sbjct: 333 DSQSVMEIWNAMVADGYNDNIVSYTAVVDALCQVGRLDEALAVFDEMKEKGISPEQYSYN 392

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI---------------------K 165
           ++I  +  A     AL +F  M A G +PN YT+ + I                     K
Sbjct: 393 SLISGFLKADMFDRALELFNHMNACGPSPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSK 452

Query: 166 GLAA-AADGNAKI--------LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
           G+    A  NA +        LG A++   E+   G+ P+  TYT + +   +A K DEA
Sbjct: 453 GIVPDVAAANAVLSSLARSGRLGMAKRVFYELKDMGVSPDTITYTMMIKCCSKASKADEA 512

Query: 217 RGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRG 249
                 M   G VPD  A+  +LID   +G +G
Sbjct: 513 MNFFSDMVETGCVPDVLALN-SLIDTLYKGGKG 544



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 69/132 (52%), Gaps = 13/132 (9%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA Q+  +++D G  PDVV HT VI+    AG+  +A  VF +M AS   P+  TY  L+
Sbjct: 266 EAYQILGKMEDSGCKPDVVTHTVVIQVLCDAGRLSDAKDVFWKMKASDQKPDRVTYITLL 325

Query: 165 KGLAAAADGNAKILGDAQKYLME----MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
                +        GD+Q  +ME    MV  G   N  +YTAV +A  +  ++DEA  + 
Sbjct: 326 DKCGDS--------GDSQS-VMEIWNAMVADGYNDNIVSYTAVVDALCQVGRLDEALAVF 376

Query: 221 QQMKAKGFVPDE 232
            +MK KG  P++
Sbjct: 377 DEMKEKGISPEQ 388



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 77/160 (48%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +F++++  G++ + +    M    SK     EA+  F+ + + G +PDV+A  ++I+ 
Sbjct: 478 KRVFYELKDMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVETGCVPDVLALNSLIDT 537

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G+G EA ++F ++    + P   TY  L+ GL    +G  K   +    L EM   
Sbjct: 538 LYKGGKGNEAWKLFHQLKEMKIEPTNGTYNTLLSGL--GREGKVK---EVMHLLEEMTHS 592

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              PN  TY  V +   +  +V+ A G+L  M  KG  PD
Sbjct: 593 IHPPNLITYNTVLDCLSKNGEVNCAIGMLYSMTEKGCTPD 632



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 77/158 (48%), Gaps = 8/158 (5%)

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F+ M   G + N    V   +   K G + +A+Q +  +K KG +PDV A  AV+ + 
Sbjct: 409 ELFNHMNACGPSPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLSSL 468

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           A +G+   A RVF  +   GV+P+  TY ++IK  + A+  +     +A  +  +MV  G
Sbjct: 469 ARSGRLGMAKRVFYELKDMGVSPDTITYTMMIKCCSKASKAD-----EAMNFFSDMVETG 523

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
             P+     ++ +   +  K +EA  L  Q+K     P
Sbjct: 524 CVPDVLALNSLIDTLYKGGKGNEAWKLFHQLKEMKIEP 561



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 91/213 (42%), Gaps = 41/213 (19%)

Query: 70   DPRNLQEIFHKMRTEGLTNNAVK----MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAH 125
            +  N+ +IF KM  +G+ N  +K    + D L   G  ++ L  F Q+ + G  PD++ +
Sbjct: 928  NTENVCQIFEKMVEQGI-NPDIKSYTVLIDTLCTAGRLNDGLSYFRQLLELGLEPDLIIY 986

Query: 126  TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185
              +I+    + + +EA+ +F  M   G+ PN YTY  LI  L  A   +     +A +  
Sbjct: 987  NLLIDGLGKSERIEEAVCLFNEMKKKGIVPNLYTYNSLILHLGKAGKAS-----EAAQMY 1041

Query: 186  MEMVGKGMRPNAGTY------------------------------TAVFEAFVRAQKVDE 215
             E++ KG +PN  TY                              TA+    V    ++ 
Sbjct: 1042 EELLIKGWKPNVFTYNALIRGYSVSGSTDNAYAAYDCVAVGVSLKTALISGLVDENLINI 1101

Query: 216  ARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFR 248
            A GL  +MK +G  PD+      ++D  G+  R
Sbjct: 1102 AEGLFAEMKRRGCGPDQ-FTYNLILDAIGKSMR 1133



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 93/206 (45%), Gaps = 27/206 (13%)

Query: 40   DQPTKKYVNTKSK----LPPPYDPF-------KKVVDEEPTDPRNLQEIFHKMRTEGLTN 88
            +Q    Y N  S+     P  Y P         K+VD E         +F++M   G   
Sbjct: 860  EQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKAGKMVDAE--------NLFNEMLEYGCKP 911

Query: 89   NAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVF 145
            N      + +     G T    Q+F ++ ++G  PD+ ++T +I+   +AG+  + L  F
Sbjct: 912  NCTIYNILLNGHRIAGNTENVCQIFEKMVEQGINPDIKSYTVLIDTLCTAGRLNDGLSYF 971

Query: 146  MRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFE 205
             ++L  G+ P+   Y +LI GL     G ++ + +A     EM  KG+ PN  TY ++  
Sbjct: 972  RQLLELGLEPDLIIYNLLIDGL-----GKSERIEEAVCLFNEMKKKGIVPNLYTYNSLIL 1026

Query: 206  AFVRAQKVDEARGLLQQMKAKGFVPD 231
               +A K  EA  + +++  KG+ P+
Sbjct: 1027 HLGKAGKASEAAQMYEELLIKGWKPN 1052



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 77/164 (46%), Gaps = 8/164 (4%)

Query: 81  MRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140
           M   G T N +  F  L K G   EA++++  + + G  P V  ++ ++ ++        
Sbjct: 174 MSLNGYTYNGLIYF--LVKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVSFGKKRDVDT 231

Query: 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTY 200
            L +   M A GV PN Y+Y + I+ L  AA        +A + L +M   G +P+  T+
Sbjct: 232 VLWLLNEMEARGVKPNVYSYTICIRVLGQAAR-----FDEAYQILGKMEDSGCKPDVVTH 286

Query: 201 TAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRG 244
           T V +    A ++ +A+ +  +MKA    PD +     L+DK G
Sbjct: 287 TVVIQVLCDAGRLSDAKDVFWKMKASDQKPD-RVTYITLLDKCG 329



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 76/168 (45%), Gaps = 8/168 (4%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +++F KM+      + V    + D     G +   ++++  +   G+  ++V++TAV++A
Sbjct: 303 KDVFWKMKASDQKPDRVTYITLLDKCGDSGDSQSVMEIWNAMVADGYNDNIVSYTAVVDA 362

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G+  EAL VF  M   G++P  Y+Y  LI G        A +   A +    M   
Sbjct: 363 LCQVGRLDEALAVFDEMKEKGISPEQYSYNSLISGFL-----KADMFDRALELFNHMNAC 417

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
           G  PN  T+      + ++ +  +A    + MK+KG VPD  A    L
Sbjct: 418 GPSPNGYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVL 465



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 84/187 (44%), Gaps = 15/187 (8%)

Query: 60  FKKVVDEEPTDPRNLQEIFHKMRTEG-----LTNNAVKMFDALSKDGLTHEALQLFAQIK 114
            + +VDE   D    +++F +M+  G      T N +   DA+ K     E L++ A++ 
Sbjct: 780 IRGLVDENLIDIA--EDLFTEMKRLGCGPDEFTYNLI--LDAMGKSMRIEEMLRVQAEMH 835

Query: 115 DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174
            KG+    V +  +I     + + ++A+ ++  +++ G +P   TY  L+ GL  A    
Sbjct: 836 RKGYESTYVTYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDGLLKAGK-- 893

Query: 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
              + DA+    EM+  G +PN   Y  +      A   +    + ++M  +G  PD K+
Sbjct: 894 ---MVDAENLFNEMLEYGCKPNCTIYNILLNGHRIAGNTENVCQIFEKMVEQGINPDIKS 950

Query: 235 VKEALID 241
               LID
Sbjct: 951 YT-VLID 956



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 5/119 (4%)

Query: 113 IKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172
           +++ G   +   +  +I     +G   EA+ V+  M+  G++P+  TY+VL+       D
Sbjct: 169 MREAGMSLNGYTYNGLIYFLVKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVSFGKKRD 228

Query: 173 GNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +  +       L EM  +G++PN  +YT       +A + DEA  +L +M+  G  PD
Sbjct: 229 VDTVLW-----LLNEMEARGVKPNVYSYTICIRVLGQAARFDEAYQILGKMEDSGCKPD 282



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 69/160 (43%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            ++F+K +  G+   T +   +   L  + L   A  LF ++K  G  PD   +  +++A
Sbjct: 758 HQLFNKFKGLGVSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKRLGCGPDEFTYNLILDA 817

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              + + +E LRV   M   G      TY  +I GL       +K L  A      ++ +
Sbjct: 818 MGKSMRIEEMLRVQAEMHRKGYESTYVTYNTIISGLV-----KSKRLEQAIDLYYNLMSE 872

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G  P   TY  + +  ++A K+ +A  L  +M   G  P+
Sbjct: 873 GFSPTPCTYGPLLDGLLKAGKMVDAENLFNEMLEYGCKPN 912


>gi|410109933|gb|AFV61046.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           micromera]
          Length = 431

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 88/186 (47%), Gaps = 12/186 (6%)

Query: 52  KLPPPYDPFKKVVDEEPTDPRNLQEI--FHKMRTEGLTNNAVKMFDAL----SKDGLTHE 105
           K   P+D  +KV+ E     +  + +  F+K   E     ++  F+ L     KDG    
Sbjct: 102 KFXXPFDTCRKVL-EHLMKLKYFKLVWGFYKEILECGYPXSLYFFNILMHRFCKDGDIRV 160

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A  +F  I   G  P VV++  ++  Y   G   E  R+   M ASGV P+ YTY+VLI 
Sbjct: 161 AXSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMXASGVQPDVYTYSVLIN 220

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           GL          + DA +   EM+ KG+ PN  T+T + +   +  +VD A  + +QM +
Sbjct: 221 GLCKEXK-----MDDANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLS 275

Query: 226 KGFVPD 231
           +  +PD
Sbjct: 276 QSLLPD 281



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 85/201 (42%), Gaps = 35/201 (17%)

Query: 63  VVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM 119
           +  E   D  N  E+F +M  +GL  N V    + D   K+G    A++++ Q+  +  +
Sbjct: 222 LCKEXKMDDAN--ELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLL 279

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN----- 174
           PD++ +  +I      G  K+A  +   M   G+ P+  TY  LI G     + B     
Sbjct: 280 PDLITYNXLIYGLCKKGDLKQANDLIXEMSMKGLKPDKITYTTLIDGCCKEGNLBTAFEH 339

Query: 175 -----------------AKILG--------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
                            A I G        DA+K L  M+  G++P+A TYT +   F +
Sbjct: 340 RXRMIEENIRLDDVAYTALISGLCQEGRXVDAEKMLRXMLSVGLKPDAXTYTMIINEFCK 399

Query: 210 AQKVDEARGLLQQMKAKGFVP 230
              V +   LL++M+  G VP
Sbjct: 400 KGDVWKGSKLLKEMQRDGHVP 420


>gi|410109903|gb|AFV61031.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           montevidensis]
          Length = 431

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 112/237 (47%), Gaps = 15/237 (6%)

Query: 2   AATAILRWLLHSPSPKRS-LRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPF 60
           +A+A+   +  +   +RS L + +  + A L+      + +  +  +  + K   P+D  
Sbjct: 53  SASAVFAAIFETKGTQRSDLYVFSGLITAYLESGFLRDAIECYR--LTREHKFWVPFDTC 110

Query: 61  KKVVDEEPTDPRNLQEI--FHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIK 114
           +KV+ E     +  + +  F++   E     ++  F+ L     KDG    A  +F  I 
Sbjct: 111 RKVL-EHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRIAQSVFDAIT 169

Query: 115 DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174
             G  P VV++  ++  Y   G   E  R+   MLASGV P+ YTY+VLI GL   +   
Sbjct: 170 KWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESK-- 227

Query: 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              + DA +   EM+ KG+ PN+ T+T + +   +  +VD A  + +QM ++   PD
Sbjct: 228 ---IDDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 281



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 86/201 (42%), Gaps = 35/201 (17%)

Query: 63  VVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM 119
           +  E   D  N  E+F +M  +GL  N+V    + D   K+G    A++++ Q+  +   
Sbjct: 222 LCKESKIDDAN--ELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 279

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN----- 174
           PD++ +  +I      G  K+A  +   M   G+ P+  TY  LI G     D +     
Sbjct: 280 PDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKDGDLDTAFEH 339

Query: 175 -----------------AKILG--------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
                            A I G        DA+K L EM+  G++P+A TYT +   F +
Sbjct: 340 RKRMIQENTRLDDVVYTALISGLCREGQSVDAEKMLREMLSVGLKPDARTYTMIINEFCK 399

Query: 210 AQKVDEARGLLQQMKAKGFVP 230
              V +   LL++M+  G VP
Sbjct: 400 KGDVWKGSKLLKEMQRDGHVP 420


>gi|410109897|gb|AFV61028.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           macropoda]
          Length = 412

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 112/237 (47%), Gaps = 15/237 (6%)

Query: 2   AATAILRWLLHSPSPKRS-LRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPF 60
           +A+A+   ++ +   +RS L + +  + A L+      + +  +  +  + K   P+D  
Sbjct: 34  SASAVFAAIVETKGTQRSDLYVFSGLITAYLESGFLRDAIECYR--LTREHKFWVPFDTC 91

Query: 61  KKVVDEEPTDPRNLQEI--FHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIK 114
           +KV+ E     +  + +  F++   E     ++  F+ L     KDG    A  +F  I 
Sbjct: 92  RKVL-EHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAIT 150

Query: 115 DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174
             G  P VV++  ++  Y   G   E  R+   MLASGV P+ YTY+VLI GL   +   
Sbjct: 151 KWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESK-- 208

Query: 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              + DA +   EM+ KG+ PN  T+T + +   +  +VD A  + +QM ++   PD
Sbjct: 209 ---MDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 262



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 84/201 (41%), Gaps = 35/201 (17%)

Query: 63  VVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM 119
           +  E   D  N  E+F +M  +GL  N V    + D   K+G    A++++ Q+  +   
Sbjct: 203 LCKESKMDDAN--ELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 260

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN----- 174
           PD++ +  +I      G  K+A  +   M    + P+  TY  LI G     D +     
Sbjct: 261 PDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKELKPDKITYTTLIDGCCKEGDLDSAFEH 320

Query: 175 -----------------AKILG--------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
                            A I G        DA+K L EM+  G++P++ TYT +   F +
Sbjct: 321 RKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPDSRTYTMIINEFCK 380

Query: 210 AQKVDEARGLLQQMKAKGFVP 230
              V +   LL++M+  G VP
Sbjct: 381 KGDVWKGSKLLKEMQRDGHVP 401


>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
 gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
          Length = 747

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 80/160 (50%), Gaps = 8/160 (5%)

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E   +MR  GL  N      + D  S+ G  +EA ++  ++ D G  P VV + A+I  +
Sbjct: 366 EFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGH 425

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             AG+  +A+ V   M   G+ P+  +Y+ ++ G   + D     + +A +   +MV KG
Sbjct: 426 CIAGKMVDAIAVLEDMKEKGLTPDVVSYSTVLSGFCRSYD-----VDEALRVKRKMVAKG 480

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           ++P+  TY+++ + F   ++  EA  L  +M   G  PDE
Sbjct: 481 IKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGLPPDE 520



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 65/134 (48%), Gaps = 5/134 (3%)

Query: 98  SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA 157
            K+G  H+AL + A++   G  P V+ +T++I +   AG    A     +M   G+ PN 
Sbjct: 321 CKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNE 380

Query: 158 YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
            TY  L+ G +     N     +A + L EM+  G  P+  TY A+      A K+ +A 
Sbjct: 381 RTYTTLVDGFSQKGYMN-----EAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAI 435

Query: 218 GLLQQMKAKGFVPD 231
            +L+ MK KG  PD
Sbjct: 436 AVLEDMKEKGLTPD 449



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 68/127 (53%), Gaps = 5/127 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +A+ +   +K+KG  PDVV+++ V+  +  +    EALRV  +M+A G+ P+  TY+ LI
Sbjct: 433 DAIAVLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLI 492

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           +G         +   +A     EM+  G+ P+  TYTA+  A+     + +A  L  +M 
Sbjct: 493 QGFC-----EQRRTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMV 547

Query: 225 AKGFVPD 231
            KG +PD
Sbjct: 548 EKGVLPD 554



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 88/183 (48%), Gaps = 8/183 (4%)

Query: 77  IFHKMRTEGLTNNAVKMFDALSKDGLTH---EALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +   M+ +GLT + V     LS    ++   EAL++  ++  KG  PD + ++++I+ + 
Sbjct: 437 VLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFC 496

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
              + KEA  +F  ML  G+ P+ +TY  LI       D     L  A +   EMV KG+
Sbjct: 497 EQRRTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGD-----LQKAIQLHNEMVEKGV 551

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINI 253
            P+  TY+ +     +  +  EA+ LL ++  +  VP +      + +     F+ V+++
Sbjct: 552 LPDVVTYSVLINGLNKQARTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSL 611

Query: 254 LFG 256
           + G
Sbjct: 612 IKG 614



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 80/179 (44%), Gaps = 11/179 (6%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
            F +M  +G   N V    + D   K     +  +L   +  KG  P+++++  VI    
Sbjct: 227 FFDRMEKKGCLPNVVTYNTLIDGYCKLRKIDDGFELLRSMALKGLEPNLISYNVVINGLC 286

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G+ KE   V   M   G + +  TY  LIKG     + +  ++  A     EM+  G+
Sbjct: 287 REGRMKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHA-----EMLRHGL 341

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVIN 252
            P+  TYT++  +  +A  ++ A   L QM+ +G  P+E+     L+D   Q  +G +N
Sbjct: 342 SPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYT-TLVDGFSQ--KGYMN 397



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 52/115 (45%), Gaps = 9/115 (7%)

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKI-- 177
           P+V  +  +I  +  AG    ALR F RM   G  PN  TY  LI       DG  K+  
Sbjct: 203 PNVFTYNILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLI-------DGYCKLRK 255

Query: 178 LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           + D  + L  M  KG+ PN  +Y  V     R  ++ E   +L +M  +G+  DE
Sbjct: 256 IDDGFELLRSMALKGLEPNLISYNVVINGLCREGRMKEISFVLTEMNKRGYSLDE 310



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 69/140 (49%), Gaps = 6/140 (4%)

Query: 103 THEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAV 162
           T EA  LF ++   G  PD   +TA+I AY   G  ++A+++   M+  GV P+  TY+V
Sbjct: 501 TKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSV 560

Query: 163 LIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
           LI GL   A        +A++ L+++  +   P+  TY  + E     +       L++ 
Sbjct: 561 LINGLNKQARTR-----EAKRLLLKLFYEESVPSDVTYHTLIENCSNIE-FKSVVSLIKG 614

Query: 223 MKAKGFVPDEKAVKEALIDK 242
              KG + +   V E++++K
Sbjct: 615 FCMKGMMTEADQVFESMLEK 634



 Score = 44.3 bits (103), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 32/146 (21%), Positives = 59/146 (40%), Gaps = 5/146 (3%)

Query: 89  NAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRM 148
           + V +       G+  EA Q+F  + +K H PD  A+  +I  +   G  ++A  ++  M
Sbjct: 607 SVVSLIKGFCMKGMMTEADQVFESMLEKNHKPDGTAYNVMIHGHCRGGDIRKAYSLYKEM 666

Query: 149 LASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFV 208
           + SG   +  T   L+K L      N     +    +  ++       A     + E   
Sbjct: 667 VKSGFLLHTVTVIALVKTLHKEGKVN-----ELNSVIANVLRSCELSEAEQAKVLVEINH 721

Query: 209 RAQKVDEARGLLQQMKAKGFVPDEKA 234
           R   +D    +L +M   GF+P+ K+
Sbjct: 722 REGNMDVVLDVLAEMAKDGFLPNGKS 747


>gi|15237375|ref|NP_199422.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171880|sp|Q9FNL2.1|PP418_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g46100
 gi|9757730|dbj|BAB08255.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|332007954|gb|AED95337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 472

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 70/139 (50%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L + G   EA +LF ++ +K   P VV +T++I     +    EA+R    M + G
Sbjct: 198 LISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKG 257

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN +TY+ L+ GL    DG +     A +    M+ +G RPN  TYT +     + QK
Sbjct: 258 IEPNVFTYSSLMDGL--CKDGRSL---QAMELFEMMMARGCRPNMVTYTTLITGLCKEQK 312

Query: 213 VDEARGLLQQMKAKGFVPD 231
           + EA  LL +M  +G  PD
Sbjct: 313 IQEAVELLDRMNLQGLKPD 331



 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 78/164 (47%), Gaps = 10/164 (6%)

Query: 73  NLQEIFHK-MRTEGLTNNAVKM---FDALSK-DGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           NL   F+K MR  GL      +     AL + DG     L++F ++  +G  PD   +  
Sbjct: 138 NLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYGT 197

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           +I      G+  EA ++F  M+    AP   TY  LI GL       +K + +A +YL E
Sbjct: 198 LISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCG-----SKNVDEAMRYLEE 252

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           M  KG+ PN  TY+++ +   +  +  +A  L + M A+G  P+
Sbjct: 253 MKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPN 296



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 74/155 (47%), Gaps = 15/155 (9%)

Query: 78  FHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
             +M+++G+  N      + D L KDG + +A++LF  +  +G  P++V +T +I     
Sbjct: 250 LEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCK 309

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
             + +EA+ +  RM   G+ P+A  Y  +I G  A +        +A  +L EM+  G+ 
Sbjct: 310 EQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISK-----FREAANFLDEMILGGIT 364

Query: 195 PNAGTYTAVFEAFVRAQKVDE-ARGLLQQMKAKGF 228
           PN  T+       +  +  +E  RGL     ++ F
Sbjct: 365 PNRLTWN------IHVKTSNEVVRGLCANYPSRAF 393



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/214 (22%), Positives = 90/214 (42%), Gaps = 19/214 (8%)

Query: 36  SSSSDQPTKKYVNTKSK-LPPPYDPFKKVVDEEPTDPRNLQ--EIFHKMRTEGLTNNAVK 92
           S + D+  +     KSK + P    +  ++D    D R+LQ  E+F  M   G   N V 
Sbjct: 240 SKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVT 299

Query: 93  ---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRML 149
              +   L K+    EA++L  ++  +G  PD   +  VI  + +  + +EA      M+
Sbjct: 300 YTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMI 359

Query: 150 ASGVAPNAYTYAV-------LIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTA 202
             G+ PN  T+ +       +++GL A     A  L     YL  M  +G+     T  +
Sbjct: 360 LGGITPNRLTWNIHVKTSNEVVRGLCANYPSRAFTL-----YL-SMRSRGISVEVETLES 413

Query: 203 VFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK 236
           + +   +  +  +A  L+ ++   G +P +   K
Sbjct: 414 LVKCLCKKGEFQKAVQLVDEIVTDGCIPSKGTWK 447


>gi|356519375|ref|XP_003528348.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 589

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 78/169 (46%), Gaps = 30/169 (17%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D+L KDG+  EAL LF+ +  KG  PD+VA+ ++I    + G+ KEA  +   M+  G
Sbjct: 218 IMDSLCKDGMVCEALNLFSGMTSKGIQPDLVAYNSLIHGLCNFGRWKEATTLLGNMMRKG 277

Query: 153 VAPNAYTYAVLIKGLA----------------------------AAADGNAKI--LGDAQ 182
           + PN  T+ VL+                                +   G+  +  +GDA 
Sbjct: 278 IMPNVQTFNVLVDNFCKDGMISRAKTIMGFMVHVGVEPDVVTYNSVISGHCLLSQMGDAV 337

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           K    M+ KG  PN  TY+++   + + + +++A  LL +M   G  PD
Sbjct: 338 KVFELMIHKGFLPNLVTYSSLIHGWCKTKNINKALFLLGEMVNSGLNPD 386



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 5/131 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   KDG+   A  +   +   G  PDVV + +VI  +    Q  +A++VF  M+  G
Sbjct: 288 LVDNFCKDGMISRAKTIMGFMVHVGVEPDVVTYNSVISGHCLLSQMGDAVKVFELMIHKG 347

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN  TY+ LI G     + N  +       L EMV  G+ P+  T++ +   F +A K
Sbjct: 348 FLPNLVTYSSLIHGWCKTKNINKALF-----LLGEMVNSGLNPDVVTWSTLIGGFCKAGK 402

Query: 213 VDEARGLLQQM 223
            + A+ L   M
Sbjct: 403 PEAAKELFCTM 413



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/150 (30%), Positives = 74/150 (49%), Gaps = 9/150 (6%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
            +F +M    L  N V    + D +   G  ++A +LF+ +  KG   DVVA+T +I+  
Sbjct: 443 SLFREMEKMNLELNVVIYNIVLDGMCSFGKLNDAQELFSCLPSKGIKIDVVAYTTMIKGL 502

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G   +A  + M+M  +G  PN +TY V ++GL    D     +  + KYL+ M GKG
Sbjct: 503 CKEGLLDDAENLLMKMEENGCLPNEFTYNVFVRGLLQRYD-----ISRSTKYLLLMKGKG 557

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
           +  +A T T +  ++  A K + A  +  Q
Sbjct: 558 LSADATT-TELLISYFSANKENSALHVFLQ 586



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 70/165 (42%), Gaps = 10/165 (6%)

Query: 71  PRNLQEIFHKMRTE----GLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           P   +E+F  M        L   A+ + D L K     EA+ LF +++      +VV + 
Sbjct: 403 PEAAKELFCTMHEHDQHPNLQTCAI-ILDGLFKCQFHSEAISLFREMEKMNLELNVVIYN 461

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
            V++   S G+  +A  +F  + + G+  +   Y  +IKGL         +L DA+  LM
Sbjct: 462 IVLDGMCSFGKLNDAQELFSCLPSKGIKIDVVAYTTMIKGLCKEG-----LLDDAENLLM 516

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +M   G  PN  TY       ++   +  +   L  MK KG   D
Sbjct: 517 KMEENGCLPNEFTYNVFVRGLLQRYDISRSTKYLLLMKGKGLSAD 561



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 6/140 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVV-AHTAVIEAYASAGQGKEALRVFMRMLAS 151
           + + L K G T  A+    +IK +    DVV A++ ++++    G   EAL +F  M + 
Sbjct: 182 IINGLCKAGDTSGAILYLEKIKGRNCDLDVVIAYSTIMDSLCKDGMVCEALNLFSGMTSK 241

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           G+ P+   Y  LI GL      N     +A   L  M+ KG+ PN  T+  + + F +  
Sbjct: 242 GIQPDLVAYNSLIHGLC-----NFGRWKEATTLLGNMMRKGIMPNVQTFNVLVDNFCKDG 296

Query: 212 KVDEARGLLQQMKAKGFVPD 231
            +  A+ ++  M   G  PD
Sbjct: 297 MISRAKTIMGFMVHVGVEPD 316



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 76/190 (40%), Gaps = 33/190 (17%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F  M  +G   N V    +     K    ++AL L  ++ + G  PDVV  + +I  +
Sbjct: 338 KVFELMIHKGFLPNLVTYSSLIHGWCKTKNINKALFLLGEMVNSGLNPDVVTWSTLIGGF 397

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAA---------------------- 170
             AG+ + A  +F  M      PN  T A+++ GL                         
Sbjct: 398 CKAGKPEAAKELFCTMHEHDQHPNLQTCAIILDGLFKCQFHSEAISLFREMEKMNLELNV 457

Query: 171 ------ADGNAKI--LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
                  DG      L DAQ+    +  KG++ +   YT + +   +   +D+A  LL +
Sbjct: 458 VIYNIVLDGMCSFGKLNDAQELFSCLPSKGIKIDVVAYTTMIKGLCKEGLLDDAENLLMK 517

Query: 223 MKAKGFVPDE 232
           M+  G +P+E
Sbjct: 518 MEENGCLPNE 527



 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 6/113 (5%)

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
           P VV    +I    + G    A R    +   G   N+YTY  +I GL  A D +  IL 
Sbjct: 139 PTVVTFATLINGLCAEGNVARAARFADSLEDMGHQSNSYTYGAIINGLCKAGDTSGAIL- 197

Query: 180 DAQKYLMEMVGKGMRPNAGT-YTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
               YL ++ G+    +    Y+ + ++  +   V EA  L   M +KG  PD
Sbjct: 198 ----YLEKIKGRNCDLDVVIAYSTIMDSLCKDGMVCEALNLFSGMTSKGIQPD 246



 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 64/173 (36%), Gaps = 16/173 (9%)

Query: 76  EIFHKM-------RTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
             FHKM       R +  T    K+F  + K       + L   I   G  PDV   T +
Sbjct: 57  SFFHKMVVMNPLPREKDFT----KLFGIIVKMKHYATTISLIKHIYSLGIKPDVYTLTII 112

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I              V   M   GV P   T+A LI GL   A+GN   +  A ++   +
Sbjct: 113 INCLCHLNHTVFGFSVLGVMFKIGVDPTVVTFATLINGL--CAEGN---VARAARFADSL 167

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
              G + N+ TY A+     +A     A   L+++K +    D       ++D
Sbjct: 168 EDMGHQSNSYTYGAIINGLCKAGDTSGAILYLEKIKGRNCDLDVVIAYSTIMD 220


>gi|242042646|ref|XP_002459194.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
 gi|241922571|gb|EER95715.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
          Length = 847

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/139 (33%), Positives = 73/139 (52%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K G   +A  +      KG++PDV     +I+ Y    +   AL++  RM   G
Sbjct: 330 VINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYG 389

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +AP+A TY  ++ GL  A  G AK   +  +   EM+ KG RPNA TY  + E F +  +
Sbjct: 390 IAPDAITYNSVLNGLCKA--GKAK---EVNETFEEMILKGCRPNAITYNILIENFCKINQ 444

Query: 213 VDEARGLLQQMKAKGFVPD 231
           ++EA G++ +M   G VPD
Sbjct: 445 LEEASGVIVRMSQDGLVPD 463



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 70/141 (49%), Gaps = 5/141 (3%)

Query: 91  VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
             + + L  +G    AL+LF + + K   PD+V + ++++     G    AL+V   M+ 
Sbjct: 258 CSLINGLCAEGDVERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVE 317

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
            G  P+ +TY ++I GL     GN   + DA   + + + KG  P+  T+  + + + + 
Sbjct: 318 DGCHPDIWTYNIVINGLCKM--GN---ISDAAVVMNDAIVKGYLPDVFTFNTMIDGYCKR 372

Query: 211 QKVDEARGLLQQMKAKGFVPD 231
            K+D A  L+++M   G  PD
Sbjct: 373 LKLDSALQLVERMWMYGIAPD 393



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 8/155 (5%)

Query: 80  KMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           +M  +GL  + +    +     ++G    A  LF ++ +KG+         +I AY+S  
Sbjct: 454 RMSQDGLVPDTISFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKL 513

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196
             + A ++F  M++ G  P+ YTY VL+ G   AA+     +  A  +L EMV KG  P+
Sbjct: 514 NMQMAEKIFGEMISKGYKPDLYTYRVLVDGSCKAAN-----VDRAYVHLAEMVSKGFVPS 568

Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             T+  V  +     +V EA  ++  M   G VP+
Sbjct: 569 MATFGRVLNSLAMNHRVSEAVAIIHIMVRMGVVPE 603



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 5/136 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M D   K      ALQL  ++   G  PD + + +V+     AG+ KE    F  M+  G
Sbjct: 365 MIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNGLCKAGKAKEVNETFEEMILKG 424

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PNA TY +LI+            L +A   ++ M   G+ P+  ++  +   F R   
Sbjct: 425 CRPNAITYNILIENFCKINQ-----LEEASGVIVRMSQDGLVPDTISFNTLIHGFCRNGD 479

Query: 213 VDEARGLLQQMKAKGF 228
           +D A  L Q++  KG+
Sbjct: 480 LDGAYLLFQKLDEKGY 495



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 64/166 (38%), Gaps = 30/166 (18%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L KD    EA Q   ++ ++G +PD   +  +I+ Y      +EA  +    +  G  P
Sbjct: 193 GLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYCKRDMLQEATELLKDAIFKGFVP 252

Query: 156 NAYTYAVLIKGLAAAAD----------------------GNAKILGDAQKYLM------- 186
           +  TY  LI GL A  D                       N+ + G  ++ L+       
Sbjct: 253 DRVTYCSLINGLCAEGDVERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVM 312

Query: 187 -EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            EMV  G  P+  TY  V     +   + +A  ++     KG++PD
Sbjct: 313 NEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVMNDAIVKGYLPD 358



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 6/136 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L + G   EA+ L   + D    PDVV +  ++       + +EA +   RM+  G  P
Sbjct: 159 GLCEGGRLEEAVALVESM-DAYIAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIP 217

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           + +TY  +I G          +L +A + L + + KG  P+  TY ++         V+ 
Sbjct: 218 DDFTYNTIIDGYC-----KRDMLQEATELLKDAIFKGFVPDRVTYCSLINGLCAEGDVER 272

Query: 216 ARGLLQQMKAKGFVPD 231
           A  L  + +AK   PD
Sbjct: 273 ALELFNEAQAKDLKPD 288



 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 6/137 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L   G  ++A  LF ++  +   PDV     V+ A    G   E+  +  ++L  G++ 
Sbjct: 89  GLYAHGHGYDARHLFDEMLRRDVFPDVATFNNVLHALCQKGDIMESGALLAKVLKRGMSV 148

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           N +T  + I+GL         +       L+E +   + P+  TY  +     +  KV E
Sbjct: 149 NKFTCNIWIRGLCEGGRLEEAVA------LVESMDAYIAPDVVTYNTLMRGLCKDSKVQE 202

Query: 216 ARGLLQQMKAKGFVPDE 232
           A   L++M  +G +PD+
Sbjct: 203 AAQYLRRMMNQGCIPDD 219



 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 60/136 (44%), Gaps = 5/136 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DAL       +A +++ ++   G  PD   HT  I+++   G+   ALR+   +   G
Sbjct: 16  IMDALVNTAYHDQAHKVYVRMLSAGVAPDARTHTVRIKSFCITGRPHVALRLLRSLPERG 75

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
                  Y  +++GL A   G      DA+    EM+ + + P+  T+  V  A  +   
Sbjct: 76  CDVKPLAYCTVVRGLYAHGHGY-----DARHLFDEMLRRDVFPDVATFNNVLHALCQKGD 130

Query: 213 VDEARGLLQQMKAKGF 228
           + E+  LL ++  +G 
Sbjct: 131 IMESGALLAKVLKRGM 146


>gi|357494871|ref|XP_003617724.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519059|gb|AET00683.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 861

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/140 (31%), Positives = 69/140 (49%), Gaps = 5/140 (3%)

Query: 92  KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
           ++ + L K     EA ++F  +KD+G+ PD V +T VI+ +   G   EA +++  M+  
Sbjct: 276 EIINGLLKRRKNDEAFRVFNDLKDRGYFPDRVMYTTVIKGFCDMGLLAEARKLWFEMIQK 335

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           G+ PN YTY V+I G     D       +A+K   +M G+G   N  +Y+ +        
Sbjct: 336 GLVPNEYTYNVMIYGYCKVRD-----FAEARKLYDDMCGRGYAENVVSYSTMISGLYLHG 390

Query: 212 KVDEARGLLQQMKAKGFVPD 231
           K DEA  L  +M  KG   D
Sbjct: 391 KTDEALSLFHEMSRKGIARD 410



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/155 (21%), Positives = 73/155 (47%), Gaps = 8/155 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +FH+M  +G+  + +    +   L ++G   +A  L  ++  +G  P V + T +I+   
Sbjct: 398 LFHEMSRKGIARDLISYNSLIKGLCQEGELAKATNLLNKLLIQGLEPSVSSFTPLIKCLC 457

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G  + A+R+   M    + P A T+  +I GL+   D          ++L++M+   +
Sbjct: 458 KVGDTEGAMRLLKDMHDRHLEPIASTHDYMIIGLSKKGD-----FAQGMEWLLKMLSWKL 512

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
           +PN  T+  + +   R  ++D+   +L  M  +G+
Sbjct: 513 KPNMQTFEHLIDCLKRENRLDDILIVLDLMFREGY 547



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/126 (25%), Positives = 62/126 (49%), Gaps = 5/126 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA +L+  +  +G+  +VV+++ +I      G+  EAL +F  M   G+A +  +Y  LI
Sbjct: 359 EARKLYDDMCGRGYAENVVSYSTMISGLYLHGKTDEALSLFHEMSRKGIARDLISYNSLI 418

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           KGL    +     L  A   L +++ +G+ P+  ++T + +   +    + A  LL+ M 
Sbjct: 419 KGLCQEGE-----LAKATNLLNKLLIQGLEPSVSSFTPLIKCLCKVGDTEGAMRLLKDMH 473

Query: 225 AKGFVP 230
            +   P
Sbjct: 474 DRHLEP 479



 Score = 50.4 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 5/140 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +  A   +       +L  Q+ +KG   D     A+I  +    Q      +   M+A  
Sbjct: 207 LIKAFCAENKVFNGYELLRQVLEKGLCVDNTVFNALINGFCKQKQYDRVSEILHIMIAMK 266

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+ YTY  +I GL      +     +A +   ++  +G  P+   YT V + F     
Sbjct: 267 CNPSIYTYQEIINGLLKRRKND-----EAFRVFNDLKDRGYFPDRVMYTTVIKGFCDMGL 321

Query: 213 VDEARGLLQQMKAKGFVPDE 232
           + EAR L  +M  KG VP+E
Sbjct: 322 LAEARKLWFEMIQKGLVPNE 341



 Score = 37.7 bits (86), Expect = 4.6,   Method: Composition-based stats.
 Identities = 41/153 (26%), Positives = 62/153 (40%), Gaps = 15/153 (9%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY----ASAGQGKEALRVFMRM 148
           +FDAL   G    A  L          PD V     +E Y       G  +E   VF+ +
Sbjct: 103 LFDALVDAGAVKAAKSLL-------EYPDFVPKNDSLEGYVRLLGENGMVEEVFDVFVSL 155

Query: 149 LASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFV 208
              G  P+A ++ V +  LA    G   ++    + ++E  G G+  +  T   + +AF 
Sbjct: 156 KKVGFLPSASSFNVCL--LACLKVGRTDLVWKLYELMIES-GVGVNIDVETVGCLIKAFC 212

Query: 209 RAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
              KV     LL+Q+  KG   D   V  ALI+
Sbjct: 213 AENKVFNGYELLRQVLEKGLCVD-NTVFNALIN 244


>gi|91806021|gb|ABE65739.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 450

 Score = 83.2 bits (204), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 92/184 (50%), Gaps = 10/184 (5%)

Query: 53  LPPPYDPFKKVVDEEPTDPRNLQE--IFHKMRTEGLTNNAVK---MFDALSKDGLTHEAL 107
           L P    F  +++    + R L+   + +KM  +GL  + V    + + + K G T  AL
Sbjct: 6   LTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSAL 65

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
            L +++++    PDVV ++A+I+     G   +A  +F  ML  G+APN +TY  +I G 
Sbjct: 66  NLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGF 125

Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
            +    +     DAQ+ L +M+ + + P+  T+ A+  A V+  K+ EA  L  +M  + 
Sbjct: 126 CSFGRWS-----DAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRC 180

Query: 228 FVPD 231
             PD
Sbjct: 181 IFPD 184



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 75/165 (45%), Gaps = 8/165 (4%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           Q++F +M + G+  + +    +     ++    EAL+LF  I+      D VA+  +I  
Sbjct: 271 QDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHG 330

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
                +  EA  +F  +   GV P+  TY V+I G    +      + DA     +M   
Sbjct: 331 MCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKS-----AISDANVLFHKMKDN 385

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK 236
           G  P+  TY  +    ++A ++D++  L+ +M++ GF  D   +K
Sbjct: 386 GHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIK 430



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 89/225 (39%), Gaps = 36/225 (16%)

Query: 43  TKKYVNTKSKLP-----PPYDPFKKVVDEEPTDPR--NLQEIFHKMRTEGLTNNAVK--- 92
           TK  +N  SK+      P    +  ++D    D    + Q +F +M  +G+  N      
Sbjct: 61  TKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNC 120

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M D     G   +A +L   + ++   PDV+   A+I A    G+  EA ++   ML   
Sbjct: 121 MIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRC 180

Query: 153 VAPNAYTYAVLIKG---------------LAAAAD-----------GNAKILGDAQKYLM 186
           + P+  TY  +I G               L A+ D             AK + +  + L 
Sbjct: 181 IFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLR 240

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           E+  +G+  N  TY  +   F     ++ A+ L Q+M + G  PD
Sbjct: 241 EISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPD 285



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 11/119 (9%)

Query: 112 QIKDKGHM------PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           +  D  HM      PDVV    +I+ Y  A +  E +++   +   G+  N  TY  LI 
Sbjct: 200 RFDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIH 259

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           G     + NA     AQ    EM+  G+ P+  T   +   F   +K++EA  L + ++
Sbjct: 260 GFCEVDNLNA-----AQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQ 313



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/160 (21%), Positives = 61/160 (38%), Gaps = 21/160 (13%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A  LF ++   G  PD +    ++  +    + +EAL +F  +  S +  +   Y ++I 
Sbjct: 270 AQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIH 329

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G+   +      + +A      +   G+ P+  TY  +   F     + +A  L  +MK 
Sbjct: 330 GMCKGSK-----VDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKD 384

Query: 226 KGFVPDEK--------AVKEALIDK--------RGQGFRG 249
            G  PD           +K   IDK        R  GF G
Sbjct: 385 NGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSG 424


>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
          Length = 814

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 84/174 (48%), Gaps = 13/174 (7%)

Query: 77  IFHKMRTEGLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +MR   +  + V +     +L K G   EA  +F  +  KG  P+V ++T ++  YA
Sbjct: 311 VFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYA 370

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
           + G   +   +F  ML  G+AP+ YT+ VLIK  A     N  +L  A     EM   G+
Sbjct: 371 TKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYA-----NCGMLDKAMIIFNEMRDHGV 425

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGF 247
           +P+  TY  V  A  R  K+D+A     QM  +G  PD+ A    LI    QGF
Sbjct: 426 KPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAY-HCLI----QGF 474



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 79/162 (48%), Gaps = 10/162 (6%)

Query: 73  NLQEIFHKMRTEGLTNNAVKMFDALSK----DGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           ++ ++F  M  +G+  + +  F+ L K     G+  +A+ +F +++D G  PDVV +  V
Sbjct: 377 DMTDLFDLMLGDGIAPD-IYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTV 435

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I A    G+  +A+  F +M+  GVAP+ Y Y  LI+G           L  A++ + E+
Sbjct: 436 IAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGS-----LLKAKELISEI 490

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           +  GM  +   ++++     +  +V +A+ +       G  P
Sbjct: 491 MNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHP 532



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 65/134 (48%), Gaps = 5/134 (3%)

Query: 98  SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA 157
           S  G   EA+++F +++    +PDVV  + ++ +    G+ KEA  VF  M   G  PN 
Sbjct: 300 SSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPNV 359

Query: 158 YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
           ++Y +++ G A         L D       M+G G+ P+  T+  + +A+     +D+A 
Sbjct: 360 FSYTIMLNGYATKG-----CLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAM 414

Query: 218 GLLQQMKAKGFVPD 231
            +  +M+  G  PD
Sbjct: 415 IIFNEMRDHGVKPD 428



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 70/141 (49%), Gaps = 7/141 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHM--PDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           +  +L   G + +A  L   + + G +  PDVVA++ VI+ +   G   +A  +F  M+ 
Sbjct: 188 LLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYSTVIDGFFKEGDVNKACDLFKEMVQ 247

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
            G+ P+  TY+ ++  L       A+ +  A+ +L +MV KG+ PN  TY  +   +   
Sbjct: 248 RGIPPDFVTYSSVVHALC-----KARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSST 302

Query: 211 QKVDEARGLLQQMKAKGFVPD 231
            +  EA  + ++M+    +PD
Sbjct: 303 GQWKEAVRVFKEMRRHSILPD 323



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 67/139 (48%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   K+G  ++A  LF ++  +G  PD V +++V+ A   A    +A     +M+  G
Sbjct: 225 VIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKG 284

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V PN +TY  LI G ++   G  K   +A +   EM    + P+  T + +  +  +  K
Sbjct: 285 VLPNNWTYNNLIYGYSST--GQWK---EAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGK 339

Query: 213 VDEARGLLQQMKAKGFVPD 231
           + EAR +   M  KG  P+
Sbjct: 340 IKEARDVFDTMAMKGQNPN 358



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 70/156 (44%), Gaps = 8/156 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+  ++   G+  + V    + + L K G   +A  +F    + G  P  V ++ +++ 
Sbjct: 484 KELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDG 543

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y   G+ ++ALRVF  M+++G+ PN   Y  L+ G           + +      EM+ K
Sbjct: 544 YCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGR-----IDEGLSLFREMLQK 598

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
           G++P+   Y  + +    A +   A+    +M   G
Sbjct: 599 GIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESG 634



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 73/172 (42%), Gaps = 33/172 (19%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFM-RMLAS 151
           + D  ++      AL  F Q+   G   +++    +++ +  A +  EAL + + R    
Sbjct: 117 LMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLKGFCEAKRTDEALDILLHRTPEL 176

Query: 152 GVAPNAYTYAVLIKGLA-------------AAADGNAKILGDAQKY-------------- 184
           G  P+ ++Y++L+K L                A+G A    D   Y              
Sbjct: 177 GCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYSTVIDGFFKEGDVN 236

Query: 185 -----LMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
                  EMV +G+ P+  TY++V  A  +A+ +D+A   L+QM  KG +P+
Sbjct: 237 KACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPN 288



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 78/187 (41%), Gaps = 16/187 (8%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F  M + G+  N V    + +   K G   E L LF ++  KG  P  + +  +I+   
Sbjct: 556 VFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLF 615

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG+   A   F  M  SG+A N  TY ++++GL        +   +A     E+    +
Sbjct: 616 EAGRTVPAKVKFHEMTESGIAMNKCTYNIVLRGLF-----KNRCFDEAIFLFKELRAMNV 670

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD--------EKAVKEALIDKRGQ 245
           + N  T   +     + ++V+EA+ L   +   G VP            +KE L+++   
Sbjct: 671 KINIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAED 730

Query: 246 GFRGVIN 252
            F  + N
Sbjct: 731 MFSSMQN 737



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 74/162 (45%), Gaps = 16/162 (9%)

Query: 76  EIFHKMRTEGLTNNAVKMFDALSKDGLTHEAL----QLFAQIKDKGHMPDVVAHTAVIEA 131
           E F++M  +G+  +    +  L +   TH +L    +L ++I + G   D+V  +++I  
Sbjct: 450 EKFNQMIDQGVAPDKYA-YHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINN 508

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM---EM 188
               G+  +A  +F   +  G+ P A  Y++L+ G          ++G  +K L     M
Sbjct: 509 LCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYC--------LVGKMEKALRVFDAM 560

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           V  G+ PN   Y  +   + +  ++DE   L ++M  KG  P
Sbjct: 561 VSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKP 602


>gi|222612845|gb|EEE50977.1| hypothetical protein OsJ_31558 [Oryza sativa Japonica Group]
          Length = 1263

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/213 (27%), Positives = 99/213 (46%), Gaps = 34/213 (15%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D +++ EI++ M+ +G  +N V    + DAL + G   EAL++F ++K KG +P+  ++ 
Sbjct: 440 DSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYN 499

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD-------------- 172
           ++I  +  A +  +AL +F  M   G  PN YT+ + I     + +              
Sbjct: 500 SLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSK 559

Query: 173 --------GNAKI--------LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
                   GNA +        LG A++   E+   G+ P+  TYT + +   +A K DEA
Sbjct: 560 GIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEA 619

Query: 217 RGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRG 249
             +   M     VPD  AV  +LID   +  RG
Sbjct: 620 VKIFYDMIENNCVPDVLAVN-SLIDTLYKAGRG 651



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 78/160 (48%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +FH+++  G++ + +    M    SK     EA+++F  + +   +PDV+A  ++I+ 
Sbjct: 585 KRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDT 644

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              AG+G EA R+F ++    + P   TY  L+ GL    +G  K   +    L EM   
Sbjct: 645 LYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGL--GREGKVK---EVMHLLEEMYHS 699

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              PN  TY  + +   +   V++A  +L  M  KG +PD
Sbjct: 700 NYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPD 739



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 79/160 (49%), Gaps = 8/160 (5%)

Query: 75   QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            + +F++M   G   N      + +     G T +   LF  + D+G  PD+ ++T +I+ 
Sbjct: 1005 ENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDT 1064

Query: 132  YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               AGQ  + L  F ++L  G+ P+  TY +LI GL     G +K L +A     EM  K
Sbjct: 1065 LCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGL-----GKSKRLEEAVSLFNEMQKK 1119

Query: 192  GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            G+ PN  TY ++     +A K  EA  + +++  KG+ P+
Sbjct: 1120 GIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPN 1159



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 76/159 (47%), Gaps = 10/159 (6%)

Query: 77   IFHKMRTEGLTNNAVKMF----DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
            +F  M  +G+ N  +K +    D L K G  ++ L  F Q+ + G  PD++ +  +I+  
Sbjct: 1042 LFQDMVDQGI-NPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGL 1100

Query: 133  ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              + + +EA+ +F  M   G+ PN YTY  LI  L     G A    +A K   E++ KG
Sbjct: 1101 GKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHL-----GKAGKAAEAGKMYEELLTKG 1155

Query: 193  MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             +PN  TY A+   +  +   D A     +M   G +P+
Sbjct: 1156 WKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPN 1194



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 77/160 (48%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +++F KM+      + V    + D    +G +   ++++  +K  G+  +VVA+TAVI+A
Sbjct: 410 KDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDA 469

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G+  EAL +F  M   G+ P  Y+Y  LI G        A   GDA +    M   
Sbjct: 470 LCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFL-----KADRFGDALELFKHMDIH 524

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G +PN  T+      + ++ +  +A    + MK+KG VPD
Sbjct: 525 GPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPD 564



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 63/128 (49%), Gaps = 5/128 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA ++ A+++++G  PDV+ HT +I+    AG+  +A  VF +M  S   P+  TY  L+
Sbjct: 373 EAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLL 432

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
                  D  +       +    M   G   N   YTAV +A  +  +V EA  +  +MK
Sbjct: 433 DKFGDNGDSQS-----VMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMK 487

Query: 225 AKGFVPDE 232
            KG VP++
Sbjct: 488 QKGIVPEQ 495



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 76/160 (47%), Gaps = 8/160 (5%)

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F  M   G   N    V   +   K G + +A+Q +  +K KG +PDVVA  AV+   
Sbjct: 516 ELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGL 575

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           A +G+   A RVF  + A GV+P+  TY ++IK  + A+        +A K   +M+   
Sbjct: 576 AKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASK-----FDEAVKIFYDMIENN 630

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
             P+     ++ +   +A + DEA  +  Q+K     P +
Sbjct: 631 CVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTD 670



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 77/158 (48%), Gaps = 8/158 (5%)

Query: 87  TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFM 146
           T N +  F  L K G   EAL+++  +   G +P V  ++ ++ A+      +  L +  
Sbjct: 287 TYNGLVYF--LVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLR 344

Query: 147 RMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEA 206
            M A GV PN Y+Y + I+ L     G AK   +A + L +M  +G +P+  T+T + + 
Sbjct: 345 EMEAHGVKPNVYSYTICIRVL-----GQAKRFDEAYRILAKMENEGCKPDVITHTVLIQV 399

Query: 207 FVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRG 244
              A ++ +A+ +  +MK     PD +     L+DK G
Sbjct: 400 LCDAGRISDAKDVFWKMKKSDQKPD-RVTYITLLDKFG 436



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 8/162 (4%)

Query: 73  NLQEIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           ++ E+F  M+ + +  N      +F  L  +G    A      +K+ G + +   +  ++
Sbjct: 233 DMAEVFDVMQRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLV 292

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
                +G  +EAL V+  M+  GV P+  TY+VL+      A G  + +      L EM 
Sbjct: 293 YFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLM-----VAFGKRRDVETVLWLLREME 347

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             G++PN  +YT       +A++ DEA  +L +M+ +G  PD
Sbjct: 348 AHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPD 389



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 76/175 (43%), Gaps = 10/175 (5%)

Query: 63   VVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM 119
            +VDE   D    + +F +M+  G   +      + DA+ K     E L++  ++  KG+ 
Sbjct: 890  LVDENLIDIA--EGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYE 947

Query: 120  PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
               V +  +I     + + ++A+ ++  +++ G +P   TY  L+ GL  A       + 
Sbjct: 948  STYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGR-----IE 1002

Query: 180  DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
            DA+    EM+  G + N   Y  +      A   ++   L Q M  +G  PD K+
Sbjct: 1003 DAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKS 1057



 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 3/76 (3%)

Query: 74  LQEIFHKMRTEGL-TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           L+E++H      L T N +   D L K+G  ++AL +   +  KG +PD+ ++  VI   
Sbjct: 693 LEEMYHSNYPPNLITYNTI--LDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGL 750

Query: 133 ASAGQGKEALRVFMRM 148
               +  EA  +F +M
Sbjct: 751 VKEERYNEAFSIFCQM 766


>gi|357499033|ref|XP_003619805.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494820|gb|AES76023.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 548

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 88/182 (48%), Gaps = 15/182 (8%)

Query: 62  KVVDEEPTDPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGH 118
           K+VDE          +F +MR   +  N V    + D L K G    AL+L  ++ D+G 
Sbjct: 355 KMVDEAI-------NLFEEMRCRKIIPNVVTYSSLIDGLCKLGRIFYALKLVDEMHDRGQ 407

Query: 119 MPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKIL 178
            P++V ++++++A        +A+ +   +   G+ P+ YTY +LIKGL  +       L
Sbjct: 408 PPNIVTYSSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTILIKGLCQSGR-----L 462

Query: 179 GDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEA 238
            DAQ    +++ KG   +   YT + + F      D+A  LL +M+  G +P+ K  +  
Sbjct: 463 EDAQNVFEDLLVKGYNLDVYAYTVMIQGFCDKGFFDKALALLSKMEDNGCIPNAKTYELV 522

Query: 239 LI 240
           ++
Sbjct: 523 IL 524



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 70/139 (50%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D + K  L ++A  L++Q+  K   PDV  + A+I  +++  +   A+ +F +M    
Sbjct: 207 IIDNMCKAKLVNDAFDLYSQMVAKRICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKEN 266

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN YT+ +L+ G       N     DA+  L  M+   ++P+  TY ++ + +    K
Sbjct: 267 INPNVYTFNILVDGFCKEGKVN-----DAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINK 321

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V++A+ +   M + G + +
Sbjct: 322 VNKAKDIFDSMASGGVIAN 340



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 5/137 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DAL K+    +A+ L   +KD+G  PD+  +T +I+    +G+ ++A  VF  +L  G
Sbjct: 417 ILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTILIKGLCQSGRLEDAQNVFEDLLVKG 476

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
              + Y Y V+I+G       +      A   L +M   G  PNA TY  V  +     +
Sbjct: 477 YNLDVYAYTVMIQGFC-----DKGFFDKALALLSKMEDNGCIPNAKTYELVILSLFEKDE 531

Query: 213 VDEARGLLQQMKAKGFV 229
            D A  LL++M  +G +
Sbjct: 532 NDTAEKLLREMIVRGLL 548



 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 81/189 (42%), Gaps = 33/189 (17%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F+KM+ E +  N      + D   K+G  ++A  + A +      PDVV + ++++ Y
Sbjct: 257 DLFNKMKKENINPNVYTFNILVDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGY 316

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA------------------------ 168
            S  +  +A  +F  M + GV  N   Y  ++ G                          
Sbjct: 317 CSINKVNKAKDIFDSMASGGVIANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNV 376

Query: 169 ----AAADGNAKI--LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
               +  DG  K+  +  A K + EM  +G  PN  TY+++ +A  +   VD+A  LL  
Sbjct: 377 VTYSSLIDGLCKLGRIFYALKLVDEMHDRGQPPNIVTYSSILDALCKNHHVDKAIALLTN 436

Query: 223 MKAKGFVPD 231
           +K +G  PD
Sbjct: 437 LKDQGIRPD 445



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 65/139 (46%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +  S+ GL   +  +FA+I  KG+ P  +    +I+     G   +AL    +++A G
Sbjct: 102 LINCFSQLGLNSLSFSIFAKILKKGYHPTAITFNTLIKGLCLKGHIHQALHFHDKVVAQG 161

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
              +  +Y  LI GL       A     A + L  + GK ++PNA  Y  + +   +A+ 
Sbjct: 162 FHLDQVSYGTLINGLCKVGRITA-----ALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKL 216

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V++A  L  QM AK   PD
Sbjct: 217 VNDAFDLYSQMVAKRICPD 235



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 71/159 (44%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
            IF K+  +G    A+    +   L   G  H+AL    ++  +G   D V++  +I   
Sbjct: 117 SIFAKILKKGYHPTAITFNTLIKGLCLKGHIHQALHFHDKVVAQGFHLDQVSYGTLINGL 176

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+   AL++  R+    V PNA  Y ++I  +  A     K++ DA     +MV K 
Sbjct: 177 CKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKA-----KLVNDAFDLYSQMVAKR 231

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + P+  TY A+   F    K++ A  L  +MK +   P+
Sbjct: 232 ICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPN 270


>gi|357498963|ref|XP_003619770.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494785|gb|AES75988.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 582

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 87/182 (47%), Gaps = 15/182 (8%)

Query: 62  KVVDEEPTDPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGH 118
           K+VDE          +F +MR   +  N V    + D L K G     L+L  ++ D+G 
Sbjct: 364 KMVDEAV-------NLFEEMRCRKIIPNVVTYNSLIDGLGKLGKISCVLKLVDEMHDRGQ 416

Query: 119 MPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKIL 178
            P+++ + ++++A        +A+ +   +   G+ P+ YTY VLIKGL  +       L
Sbjct: 417 PPNIITYNSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTVLIKGLCQSGK-----L 471

Query: 179 GDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEA 238
            DAQK   +++ KG   +  TYT + + F      D A  LL +M+  G +P+ K  +  
Sbjct: 472 EDAQKVFEDLLVKGYNLDVYTYTVMIQGFCVKGLFDAALALLSKMEDNGCIPNAKTYEIV 531

Query: 239 LI 240
           ++
Sbjct: 532 IL 533



 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 78/149 (52%), Gaps = 8/149 (5%)

Query: 86  LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVF 145
           +T N++   DAL K+    +A+ L   +KD+G  PD+  +T +I+    +G+ ++A +VF
Sbjct: 421 ITYNSI--LDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTVLIKGLCQSGKLEDAQKVF 478

Query: 146 MRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFE 205
             +L  G   + YTY V+I+G       +A     A   L +M   G  PNA TY  V  
Sbjct: 479 EDLLVKGYNLDVYTYTVMIQGFCVKGLFDA-----ALALLSKMEDNGCIPNAKTYEIVIL 533

Query: 206 AFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
           +     + D A  LL++M A+G + DEK+
Sbjct: 534 SLFEKDENDMAEKLLREMIARGLL-DEKS 561



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 80/185 (43%), Gaps = 35/185 (18%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D + K  L ++A  L++Q+  K   PD     ++I  +   GQ KEA+ +  +M+   
Sbjct: 216 IIDNMCKAKLVNDAFDLYSQMVAKRISPDDFTCNSLIYGFCIMGQLKEAVGLLHKMILEN 275

Query: 153 VAPNAYTYAVLIKGLAAAADGNAK-------------ILGDAQKY--LME---------- 187
           + P  YT+++L+   A   +G  K             I+ D   Y  LM+          
Sbjct: 276 INPRMYTFSILVD--AFCKEGKVKEAKMMLGVTMKKDIILDVVTYNSLMDGYCLVKEINK 333

Query: 188 -------MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
                  M  +G+  N  +YT +     + + VDEA  L ++M+ +  +P+      +LI
Sbjct: 334 AKDIFDSMASRGVIANVQSYTTMINGLCKIKMVDEAVNLFEEMRCRKIIPNV-VTYNSLI 392

Query: 241 DKRGQ 245
           D  G+
Sbjct: 393 DGLGK 397



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 10/183 (5%)

Query: 55  PPYDPFKKVVDE--EPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQL 109
           PP   F K++    +         +  +M   G+ ++      + +  S+ GL   +  +
Sbjct: 68  PPIIQFNKILSSLVKAKHHSTALSLHQQMELNGIVSDFFTFNILINCFSQLGLNSLSFSV 127

Query: 110 FAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169
           F +I  KG  P+ +    +I+     G   +AL    +++A G   +  +Y  LI GL  
Sbjct: 128 FGKILKKGFDPNAITFNTLIKGLCLKGHIHQALNFHDKVVAQGFHLDQVSYGTLINGLCK 187

Query: 170 AADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFV 229
                A     A + L  + GK ++PNA  Y  + +   +A+ V++A  L  QM AK   
Sbjct: 188 VGRITA-----ALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRIS 242

Query: 230 PDE 232
           PD+
Sbjct: 243 PDD 245



 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 75/188 (39%), Gaps = 33/188 (17%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           + HKM  E +         + DA  K+G   EA  +      K  + DVV + ++++ Y 
Sbjct: 267 LLHKMILENINPRMYTFSILVDAFCKEGKVKEAKMMLGVTMKKDIILDVVTYNSLMDGYC 326

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA------------------------- 168
              +  +A  +F  M + GV  N  +Y  +I GL                          
Sbjct: 327 LVKEINKAKDIFDSMASRGVIANVQSYTTMINGLCKIKMVDEAVNLFEEMRCRKIIPNVV 386

Query: 169 ---AAADGNAKI--LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
              +  DG  K+  +    K + EM  +G  PN  TY ++ +A  +   VD+A  LL  +
Sbjct: 387 TYNSLIDGLGKLGKISCVLKLVDEMHDRGQPPNIITYNSILDALCKNHHVDKAIALLTNL 446

Query: 224 KAKGFVPD 231
           K +G  PD
Sbjct: 447 KDQGIRPD 454



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 71/157 (45%), Gaps = 8/157 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F K+  +G   NA+    +   L   G  H+AL    ++  +G   D V++  +I    
Sbjct: 127 VFGKILKKGFDPNAITFNTLIKGLCLKGHIHQALNFHDKVVAQGFHLDQVSYGTLINGLC 186

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G+   AL++  R+    V PNA  Y ++I  +  A     K++ DA     +MV K +
Sbjct: 187 KVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKA-----KLVNDAFDLYSQMVAKRI 241

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
            P+  T  ++   F    ++ EA GLL +M  +   P
Sbjct: 242 SPDDFTCNSLIYGFCIMGQLKEAVGLLHKMILENINP 278



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K G    ALQL  ++  K   P+ V +  +I+    A    +A  ++ +M+A  
Sbjct: 181 LINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKR 240

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           ++P+ +T   LI G           L +A   L +M+ + + P   T++ + +AF +  K
Sbjct: 241 ISPDDFTCNSLIYGFCIMGQ-----LKEAVGLLHKMILENINPRMYTFSILVDAFCKEGK 295

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V EA+ +L     K  + D
Sbjct: 296 VKEAKMMLGVTMKKDIILD 314


>gi|297817834|ref|XP_002876800.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322638|gb|EFH53059.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1010

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/210 (27%), Positives = 90/210 (42%), Gaps = 35/210 (16%)

Query: 71  PRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P+ L E F +M+  GL  N V    + DA  K+G+  +A++ +  ++  G +P+   +T+
Sbjct: 182 PKGL-EFFREMKRNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTS 240

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA---------------- 171
           +I+AY   G   +A R+   ML  GV  N  TY  LI GL                    
Sbjct: 241 LIDAYCKIGNLSDAFRLANEMLQVGVEWNVVTYTALIDGLCGWENPTEGLHLLDEMVELD 300

Query: 172 ------------DG--NAKILGDAQKYLMEMVGK-GMRPNAGTYTAVFEAFVRAQKVDEA 216
                       DG    K++  A  Y   +    G++ NA  YTA+ +   +  +V+ A
Sbjct: 301 IKVTVVTFCVLIDGLCKNKLVSKAIDYFGRISNDFGLQANAAIYTAMIDGLCKGNQVEAA 360

Query: 217 RGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
             L +QM  KG VPD  A    +     QG
Sbjct: 361 TTLFEQMAQKGLVPDRTAYTSLMDGNFKQG 390



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 78/168 (46%), Gaps = 9/168 (5%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M+  GL  + V    M D   K G   + +  F ++KD    PDV+ + A+I  + 
Sbjct: 117 LFEEMKFRGLIPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFC 176

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G+  + L  F  M  +G+ PN  +Y+ L+            ++  A K+ ++M   G+
Sbjct: 177 KFGKLPKGLEFFREMKRNGLKPNVVSYSTLVDAFCKEG-----MMQQAIKFYVDMRRVGL 231

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
            PN  TYT++ +A+ +   + +A  L  +M   G V        ALID
Sbjct: 232 VPNEYTYTSLIDAYCKIGNLSDAFRLANEMLQVG-VEWNVVTYTALID 278



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 71/138 (51%), Gaps = 7/138 (5%)

Query: 86  LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVF 145
           +T NA  + +   K G   + L+ F ++K  G  P+VV+++ +++A+   G  ++A++ +
Sbjct: 166 ITYNA--LINCFCKFGKLPKGLEFFREMKRNGLKPNVVSYSTLVDAFCKEGMMQQAIKFY 223

Query: 146 MRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFE 205
           + M   G+ PN YTY  LI   A    GN   L DA +   EM+  G+  N  TYTA+ +
Sbjct: 224 VDMRRVGLVPNEYTYTSLID--AYCKIGN---LSDAFRLANEMLQVGVEWNVVTYTALID 278

Query: 206 AFVRAQKVDEARGLLQQM 223
                +   E   LL +M
Sbjct: 279 GLCGWENPTEGLHLLDEM 296



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 6/149 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M D + K+G    A  LF ++K +G +PD V + ++I+ +   G+  + +  F  M    
Sbjct: 101 MIDCMCKEGDVEAARGLFEEMKFRGLIPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMC 160

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  TY  LI             L    ++  EM   G++PN  +Y+ + +AF +   
Sbjct: 161 CEPDVITYNALINCFCKFGK-----LPKGLEFFREMKRNGLKPNVVSYSTLVDAFCKEGM 215

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALID 241
           + +A      M+  G VP+E     +LID
Sbjct: 216 MQQAIKFYVDMRRVGLVPNEYTYT-SLID 243



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 65/135 (48%), Gaps = 8/135 (5%)

Query: 85  GLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEA 141
           GL  NA     M D L K      A  LF Q+  KG +PD  A+T++++     G   EA
Sbjct: 336 GLQANAAIYTAMIDGLCKGNQVEAATTLFEQMAQKGLVPDRTAYTSLMDGNFKQGNVLEA 395

Query: 142 LRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYT 201
           L +  +M+ +G+  +   Y  L+ GL+     +   L  A+ +L EM+G+G+ P+     
Sbjct: 396 LALRDKMVETGMKLDLLAYTSLVWGLS-----HCNQLQKARSFLEEMIGEGIHPDEVLCI 450

Query: 202 AVFEAFVRAQKVDEA 216
           +V +       ++EA
Sbjct: 451 SVLKKHYELGCINEA 465



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 78/171 (45%), Gaps = 12/171 (7%)

Query: 66  EEPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQI-KDKGHMPDVVA 124
           E PT+  +L +   ++  +        + D L K+ L  +A+  F +I  D G   +   
Sbjct: 284 ENPTEGLHLLDEMVELDIKVTVVTFCVLIDGLCKNKLVSKAIDYFGRISNDFGLQANAAI 343

Query: 125 HTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKY 184
           +TA+I+      Q + A  +F +M   G+ P+   Y  L+       DGN K  G+  + 
Sbjct: 344 YTAMIDGLCKGNQVEAATTLFEQMAQKGLVPDRTAYTSLM-------DGNFK-QGNVLEA 395

Query: 185 LM---EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           L    +MV  GM+ +   YT++        ++ +AR  L++M  +G  PDE
Sbjct: 396 LALRDKMVETGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDE 446



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 10/129 (7%)

Query: 119 MPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA--AAADGNAK 176
           +P      A+       G  +EA++ F +M    V P   +   L+   A     DG   
Sbjct: 22  VPGFGVFDALFSVLIDLGMVEEAIQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKTDG--- 78

Query: 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK 236
                +++  +M+G G +P   TY  + +   +   V+ ARGL ++MK +G +PD     
Sbjct: 79  ----VKRFFKDMIGAGAKPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLIPD-TVTY 133

Query: 237 EALIDKRGQ 245
            ++ID  G+
Sbjct: 134 NSMIDGFGK 142


>gi|308080398|ref|NP_001183938.1| PPR-814a [Zea mays]
 gi|223929924|gb|ACN24620.1| PPR-814a [Zea mays]
          Length = 814

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 83/174 (47%), Gaps = 13/174 (7%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +MR + +  + V    +  +L K G   EA  +F  +  KG  PDV ++  ++  YA
Sbjct: 311 VFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYA 370

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
           + G   +   +F  ML  G+AP   T+ VLIK  A     N  +L  A     EM   G+
Sbjct: 371 TKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYA-----NCGMLDKAMIIFNEMRDHGV 425

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGF 247
           +PN  TYT V  A  R  K+D+A     QM  +G  PD+ A    LI    QGF
Sbjct: 426 KPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAY-HCLI----QGF 474



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 79/162 (48%), Gaps = 10/162 (6%)

Query: 73  NLQEIFHKMRTEGLTNNAVKMFDALSK----DGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           ++ ++F  M  +G+    +  F+ L K     G+  +A+ +F +++D G  P+V+ +T V
Sbjct: 377 DMTDLFDLMLGDGIAP-VICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTV 435

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I A    G+  +A+  F +M+  GVAP+ Y Y  LI+G           L  A++ + E+
Sbjct: 436 IAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGS-----LLKAKELISEI 490

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           +  GM  +   ++++     +  +V +A+ +       G  P
Sbjct: 491 MNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHP 532



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 70/141 (49%), Gaps = 7/141 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHM--PDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           +  +L   G + +A  L   + + G +  PDVVA+  VI+ +   G   +A  +F  M+ 
Sbjct: 188 LLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQ 247

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
            G+ P+  TY+ ++  L       A+ +  A+ +L +MV KG+ PN  TY  +   +   
Sbjct: 248 RGIPPDFVTYSSVVHALC-----KARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSST 302

Query: 211 QKVDEARGLLQQMKAKGFVPD 231
            +  EA  + ++M+ +  +PD
Sbjct: 303 GQWKEAVRVFKEMRRQSILPD 323



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   K+G  ++A  LF ++  +G  PD V +++V+ A   A    +A     +M+  G
Sbjct: 225 VIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKG 284

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V PN +TY  LI G ++   G  K   +A +   EM  + + P+  T+  +  +  +  K
Sbjct: 285 VLPNNWTYNNLIYGYSST--GQWK---EAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGK 339

Query: 213 VDEARGLLQQMKAKGFVPD 231
           + EAR +   M  KG  PD
Sbjct: 340 IKEARDVFDTMAMKGQNPD 358



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 73/172 (42%), Gaps = 33/172 (19%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFM-RMLAS 151
           + D  ++      AL  F Q+   G   D++    +++ +  A +  EAL + + R    
Sbjct: 117 LMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEALDILLHRTPEL 176

Query: 152 GVAPNAYTYAVLIKGLA-------------AAADGNAKILGDAQKY-------------- 184
           G  P+ ++Y++L+K L                A+G A    D   Y              
Sbjct: 177 GCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYNTVIDGFFKEGDVN 236

Query: 185 -----LMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
                  EMV +G+ P+  TY++V  A  +A+ +D+A   L+QM  KG +P+
Sbjct: 237 KACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPN 288



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 70/157 (44%), Gaps = 8/157 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+  ++   G+  + V    + + L K G   +A  +F    + G  P  V ++ +++ 
Sbjct: 484 KELISEIMNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDG 543

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y   G+ ++ALRVF  M+++G+ PN   Y  L+ G           + +      EM+ K
Sbjct: 544 YCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGR-----IDEGLSLFREMLQK 598

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
           G++P+   Y  + +    A +   A+    +M   G 
Sbjct: 599 GIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGI 635



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 79/187 (42%), Gaps = 16/187 (8%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F  M + G+  N V    + +   K G   E L LF ++  KG  P  + +  +I+   
Sbjct: 556 VFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLF 615

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG+   A   F  M  SG+A N  TY+++++GL        +   +A     E+    +
Sbjct: 616 EAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLF-----KNRCFDEAIFLFKELRAMNV 670

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD--------EKAVKEALIDKRGQ 245
           + +  T   +     + ++V+EA+ L   +   G VP            +KE L+++   
Sbjct: 671 KIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAED 730

Query: 246 GFRGVIN 252
            F  + N
Sbjct: 731 MFSSMQN 737



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 74/162 (45%), Gaps = 16/162 (9%)

Query: 76  EIFHKMRTEGLTNNAVKMFDALSKDGLTHEAL----QLFAQIKDKGHMPDVVAHTAVIEA 131
           E F++M  +G+  +    +  L +   TH +L    +L ++I + G   D+V  +++I  
Sbjct: 450 EKFNQMIDQGVAPDKYA-YHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVLFSSIINN 508

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM---EM 188
               G+  +A  +F   +  G+ P A  Y++L+ G          ++G  +K L     M
Sbjct: 509 LCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYC--------LVGKMEKALRVFDAM 560

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           V  G+ PN   Y  +   + +  ++DE   L ++M  KG  P
Sbjct: 561 VSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKP 602


>gi|222613072|gb|EEE51204.1| hypothetical protein OsJ_32019 [Oryza sativa Japonica Group]
          Length = 615

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 83/164 (50%), Gaps = 8/164 (4%)

Query: 71  PRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P+       KMR++G+  N V    + + L K+G + EA ++F  +  +G  PD+  +  
Sbjct: 260 PKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRT 319

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           +++ +   G+  E+ ++F  M+  GV P+  TY  LI G   A       + +A K L  
Sbjct: 320 LLQGHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGK-----MDEATKLLAS 374

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           MV  G++P+  TY  +   + R  ++D+A  L ++M + G  P+
Sbjct: 375 MVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPN 418



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 64/127 (50%), Gaps = 5/127 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +A+++   +   G MPD + + +++  Y S+GQ KEA+    +M + GV PN  TY+ L+
Sbjct: 227 KAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLM 286

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
             L    +G +    +A+K    M  +G+ P+  TY  + +   +  +V E+  L   M 
Sbjct: 287 NYL--CKNGRST---EARKIFDSMTKRGLEPDIATYRTLLQGHCKEGRVIESEKLFDLMV 341

Query: 225 AKGFVPD 231
             G  PD
Sbjct: 342 RIGVKPD 348



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 68/156 (43%), Gaps = 8/156 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           ++IF  M   GL  +      +     K+G   E+ +LF  +   G  PD++ +  +I+ 
Sbjct: 299 RKIFDSMTKRGLEPDIATYRTLLQGHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDG 358

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              AG+  EA ++   M++ GV P+  TY  LI G    +      + DA     EMV  
Sbjct: 359 CCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSR-----MDDALALFKEMVSS 413

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
           G+ PN  TY  + +     ++   A+ L   +   G
Sbjct: 414 GVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSG 449



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 80/180 (44%), Gaps = 10/180 (5%)

Query: 49  TKSKLPPPYDPFKKVVDEEPTDPRNLQ--EIFHKMRTEGLTNNAVK---MFDALSKDGLT 103
           TK  L P    ++ ++     + R ++  ++F  M   G+  + +    + D     G  
Sbjct: 306 TKRGLEPDIATYRTLLQGHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKM 365

Query: 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
            EA +L A +   G  PD+V +  +I  Y    +  +AL +F  M++SGV+PN  TY ++
Sbjct: 366 DEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNII 425

Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           ++GL      + +    A++  + +   G +    TY  +     +    DEA  + Q +
Sbjct: 426 LQGLF-----HTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNL 480



 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 75/159 (47%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+ + M   G+  + +    +       G   EA+    +++  G  P+VV +++++   
Sbjct: 230 EVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYL 289

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+  EA ++F  M   G+ P+  TY  L++G         +++ +++K    MV  G
Sbjct: 290 CKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGHCK----EGRVI-ESEKLFDLMVRIG 344

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           ++P+  TY  + +    A K+DEA  LL  M + G  PD
Sbjct: 345 VKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPD 383



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 72/155 (46%), Gaps = 19/155 (12%)

Query: 88  NNAVKMFDALSKDGLTHEALQLFAQIKDK---GHMPDVVAHTAVIEAYASAG-QGK---- 139
           NN +K    L  +  + EAL+L   + D    G  PDVV++  V+  +   G Q K    
Sbjct: 167 NNLLK---GLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGIQTKLTAQ 223

Query: 140 ---EALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196
              +A+ V   M+ +GV P+  TY  ++ G  ++  G  K   +A   L +M   G+ PN
Sbjct: 224 AMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSS--GQPK---EAIGTLKKMRSDGVEPN 278

Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             TY+++     +  +  EAR +   M  +G  PD
Sbjct: 279 VVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPD 313



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/146 (21%), Positives = 67/146 (45%), Gaps = 7/146 (4%)

Query: 93  MFDALSKDGLTHEALQL-FAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRML-- 149
           +   L  D  T +A+ +   ++ + G +PDV ++  +++      + +EAL +   M   
Sbjct: 133 LLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADD 192

Query: 150 -ASGVAPNAYTYAVLIKGL---AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFE 205
              G  P+  +Y  ++ G           A+ +  A + L  MV  G+ P+  TY ++  
Sbjct: 193 RGGGSPPDVVSYNTVLNGFFKEGIQTKLTAQAMDKAMEVLNTMVKNGVMPDCMTYNSILH 252

Query: 206 AFVRAQKVDEARGLLQQMKAKGFVPD 231
            +  + +  EA G L++M++ G  P+
Sbjct: 253 GYCSSGQPKEAIGTLKKMRSDGVEPN 278



 Score = 41.6 bits (96), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 58/134 (43%), Gaps = 17/134 (12%)

Query: 110 FAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMR-MLASGVAPNAYTYAVLIKGLA 168
              +  KG   D +  T +++   +  +  +A+ + +R M   G  P+ ++Y  L+KGL 
Sbjct: 115 LGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGL- 173

Query: 169 AAADGNAKILGDAQKYLMEMV---GKGMRPNAGTYTAVFEAFVR--------AQKVDEAR 217
              D N     +A + L  M    G G  P+  +Y  V   F +        AQ +D+A 
Sbjct: 174 --CDENRS--QEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGIQTKLTAQAMDKAM 229

Query: 218 GLLQQMKAKGFVPD 231
            +L  M   G +PD
Sbjct: 230 EVLNTMVKNGVMPD 243



 Score = 38.9 bits (89), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 29/160 (18%), Positives = 62/160 (38%), Gaps = 8/160 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M + G++ N +    +   L     T  A +L+  I   G   ++  +  ++    
Sbjct: 406 LFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLC 465

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
                 EALR+F  +  + +     T+ ++I  L          + +A+         G+
Sbjct: 466 KNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGR-----MDEAKDLFAAHSANGL 520

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK 233
            P+  TY+ + E  +    ++E   L   M+  G   D +
Sbjct: 521 VPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSR 560


>gi|414591648|tpg|DAA42219.1| TPA: PPR-814b [Zea mays]
          Length = 827

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 83/174 (47%), Gaps = 13/174 (7%)

Query: 77  IFHKMRTEGLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +MR   +  + V +     +L K G   EA  +F  +  KG  PDV ++  ++  YA
Sbjct: 324 VFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYA 383

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
           + G   +   +F  ML  G+AP+ YT+ VLIK  A     N  +L  A     EM   G+
Sbjct: 384 TKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYA-----NCGMLDKAMIIFNEMRDHGV 438

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGF 247
           +P+  TY  V  A  R  K+D+A     QM  +G  PD+ A    LI    QGF
Sbjct: 439 KPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYN-CLI----QGF 487



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 82/172 (47%), Gaps = 9/172 (5%)

Query: 73  NLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           ++ ++F  M  +G+  +      +  A +  G+  +A+ +F +++D G  PDVV +  VI
Sbjct: 390 DMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVI 449

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
            A    G+  +A+  F +M+  GVAP+ Y Y  LI+G           L  A++ + E++
Sbjct: 450 AALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGS-----LLKAKELISEIM 504

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
             GM  +   ++++     +  +V +A+ +       G  PD   V   L+D
Sbjct: 505 NNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPD-AVVYSMLMD 555



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 74/160 (46%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+  ++   G+  + V    + + L K G   +A  +F    + G  PD V ++ +++ 
Sbjct: 497 KELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDG 556

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y   G+ ++ALRVF  M+++G+ PN   Y  L+ G           + +      EM+ +
Sbjct: 557 YCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGR-----IDEGLSLFREMLQR 611

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G++P+   Y+ + +   +A +   A+    +M   G   D
Sbjct: 612 GIKPSTILYSIIIDGLFQAGRTVPAKMKFHEMTESGIAMD 651



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 65/134 (48%), Gaps = 5/134 (3%)

Query: 98  SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA 157
           S  G   EA+++F +++    +PDVV  + ++ +    G+ KEA  VF  M   G  P+ 
Sbjct: 313 SSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDV 372

Query: 158 YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
           ++Y +++ G A         L D       M+G G+ P+  T+  + +A+     +D+A 
Sbjct: 373 FSYNIMLNGYATKG-----CLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAM 427

Query: 218 GLLQQMKAKGFVPD 231
            +  +M+  G  PD
Sbjct: 428 IIFNEMRDHGVKPD 441



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 83/182 (45%), Gaps = 17/182 (9%)

Query: 76  EIFHKMRTEGLTNNAVKMFDALSKDGLTHEAL----QLFAQIKDKGHMPDVVAHTAVIEA 131
           E F++M  +G+  +    ++ L +   TH +L    +L ++I + G   D+V  +++I  
Sbjct: 463 EKFNQMIDQGVAPDKYA-YNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINN 521

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM---EM 188
               G+  +A  +F   +  G+ P+A  Y++L+ G          ++G  +K L     M
Sbjct: 522 LCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYC--------LVGKMEKALRVFDAM 573

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFR 248
           V  G+ PN   Y  +   + +  ++DE   L ++M  +G  P    +   +ID   Q  R
Sbjct: 574 VSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKP-STILYSIIIDGLFQAGR 632

Query: 249 GV 250
            V
Sbjct: 633 TV 634



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 67/141 (47%), Gaps = 7/141 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHM--PDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           +  +L   G + +A  L   + + G +  P+VVA+  VI+ +   G   +A  +F  M+ 
Sbjct: 201 LLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQ 260

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
            G+ P+  TY  ++  L       A+ +  A+ +L +MV K + PN  TY  +   +   
Sbjct: 261 RGIPPDLVTYNSVVHALC-----KARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSST 315

Query: 211 QKVDEARGLLQQMKAKGFVPD 231
            +  EA  + ++M+    +PD
Sbjct: 316 GQWKEAVRVFKEMRRHSILPD 336



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   K+G  ++A  LF ++  +G  PD+V + +V+ A   A    +A     +M+   
Sbjct: 238 VIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKR 297

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V PN +TY  LI G ++   G  K   +A +   EM    + P+  T + +  +  +  K
Sbjct: 298 VLPNNWTYNNLIYGYSST--GQWK---EAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGK 352

Query: 213 VDEARGLLQQMKAKGFVPD 231
           + EAR +   M  KG  PD
Sbjct: 353 IKEARDVFDTMAMKGQNPD 371



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 80/187 (42%), Gaps = 16/187 (8%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F  M + G+  N V    + +   K G   E L LF ++  +G  P  + ++ +I+   
Sbjct: 569 VFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLF 628

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG+   A   F  M  SG+A +  TY ++++GL        +   +A     E+    +
Sbjct: 629 QAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLF-----KNRCFDEAIFLFKELRAMNV 683

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD--------EKAVKEALIDKRGQ 245
           + N  T   + +   + ++V+EA+ L   +     VP+           +KE L+++   
Sbjct: 684 KINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPNVVTYSIMITNLIKEGLVEEAED 743

Query: 246 GFRGVIN 252
            F  + N
Sbjct: 744 MFSSMQN 750



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 73/172 (42%), Gaps = 33/172 (19%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFM-RMLAS 151
           + D  ++      AL  F Q+   G   +++    ++E +  A +  EAL + + R    
Sbjct: 130 LMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALDILLHRTPEL 189

Query: 152 GVAPNAYTYAVLIKGLA-----AAADGNAKIL------------------------GDAQ 182
           G  P+ ++Y++L+K L        AD   +++                        GD  
Sbjct: 190 GCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVN 249

Query: 183 K---YLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           K      EMV +G+ P+  TY +V  A  +A+ +D+A   L+QM  K  +P+
Sbjct: 250 KACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPN 301


>gi|449444228|ref|XP_004139877.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
 gi|449492643|ref|XP_004159059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
          Length = 585

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 84/194 (43%), Gaps = 39/194 (20%)

Query: 77  IFHKMRTEGLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           ++ KM   GL+ N   +    + L       E L   A I  +G++PDVV +T++I+   
Sbjct: 113 LYKKMHLAGLSPNFFTLNILINCLCNVNRVREGLSAMAGIMRRGYIPDVVTYTSLIKGLC 172

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN------------------- 174
              +  EA R+F+RM   G  PN  TY  LIKGL    + N                   
Sbjct: 173 MEHRISEATRLFIRMQKLGCWPNVVTYGTLIKGLCRTGNINLALKLHQEMLNGTSPYAIN 232

Query: 175 ---------------AKI--LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
                           KI    +A++   EMV +G+RP+  T++A+ +   +   V EA+
Sbjct: 233 CKPNIFSYNIIIDELCKIGKWKEAKRLFNEMVDQGVRPDVVTFSALIDTLCKEGMVIEAK 292

Query: 218 GLLQQMKAKGFVPD 231
             L+ M  +G VPD
Sbjct: 293 KFLETMMLRGIVPD 306



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 69/142 (48%), Gaps = 5/142 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K G   EA +LF ++ D+G  PDVV  +A+I+     G   EA +    M+  G
Sbjct: 243 IIDELCKIGKWKEAKRLFNEMVDQGVRPDVVTFSALIDTLCKEGMVIEAKKFLETMMLRG 302

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+ +T+  LI+G     D     L  A++  + M  KG  P+  +YT +   + +   
Sbjct: 303 IVPDLFTFTSLIEGFCLVGD-----LDSAKELFLSMPSKGYEPDVISYTVLIYGYCKTFN 357

Query: 213 VDEARGLLQQMKAKGFVPDEKA 234
           V+EA  L  +M   G  PD K 
Sbjct: 358 VEEAMKLYNEMLRVGKWPDMKT 379



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 82/164 (50%), Gaps = 14/164 (8%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDK------GHMPDVVAHTA 127
           +F +M+  G   N V    +   L + G  + AL+L  ++ +          P++ ++  
Sbjct: 183 LFIRMQKLGCWPNVVTYGTLIKGLCRTGNINLALKLHQEMLNGTSPYAINCKPNIFSYNI 242

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           +I+     G+ KEA R+F  M+  GV P+  T++ LI  L         ++ +A+K+L  
Sbjct: 243 IIDELCKIGKWKEAKRLFNEMVDQGVRPDVVTFSALIDTLCKEG-----MVIEAKKFLET 297

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           M+ +G+ P+  T+T++ E F     +D A+ L   M +KG+ PD
Sbjct: 298 MMLRGIVPDLFTFTSLIEGFCLVGDLDSAKELFLSMPSKGYEPD 341



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 7/134 (5%)

Query: 94  FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGV 153
            D L K+G   EA++LF ++K      D+ +   +I+    A + + A  +F ++   G+
Sbjct: 419 LDGLCKNGCLFEAMELFNELKSYNMKLDIESFNCLIDGLCKARKLETAWELFEKLSQEGL 478

Query: 154 APNAYTYAVLIKGLAAAAD-GNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            P+  TY ++I G        NA IL         M   G  PN  TY+A+   F +  K
Sbjct: 479 QPDVVTYCIMINGFCKNGQVDNANIL------FQMMEENGCTPNLLTYSALLHGFYKNNK 532

Query: 213 VDEARGLLQQMKAK 226
           ++E   LL +M  K
Sbjct: 533 LEEVVKLLHKMIQK 546



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 30/156 (19%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A +LF  +  KG+ PDV+++T +I  Y      +EA++++  ML  G  P+  T+ VL+K
Sbjct: 326 AKELFLSMPSKGYEPDVISYTVLIYGYCKTFNVEEAMKLYNEMLRVGKWPDMKTFCVLLK 385

Query: 166 GLAAAA----------------------------DGNAK--ILGDAQKYLMEMVGKGMRP 195
           GL  A                             DG  K   L +A +   E+    M+ 
Sbjct: 386 GLFLAGKVGDAKKLFGVVKPHAVPKNLYICSVFLDGLCKNGCLFEAMELFNELKSYNMKL 445

Query: 196 NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +  ++  + +   +A+K++ A  L +++  +G  PD
Sbjct: 446 DIESFNCLIDGLCKARKLETAWELFEKLSQEGLQPD 481



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 74/152 (48%), Gaps = 12/152 (7%)

Query: 76  EIFHKMRTEGLTNNAVKMFDALSKDGLT-----HEALQLFAQIKDKGHMPDVVAHTAVIE 130
           E+F+++++  +  + ++ F+ L  DGL        A +LF ++  +G  PDVV +  +I 
Sbjct: 433 ELFNELKSYNMKLD-IESFNCLI-DGLCKARKLETAWELFEKLSQEGLQPDVVTYCIMIN 490

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
            +   GQ   A  +F  M  +G  PN  TY+ L+ G       N K L +  K L +M+ 
Sbjct: 491 GFCKNGQVDNANILFQMMEENGCTPNLLTYSALLHGFYK----NNK-LEEVVKLLHKMIQ 545

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
           K +   A  YT V +   + +K  E   +LQ+
Sbjct: 546 KDVSLAASIYTIVEDMVSKDEKCREWLDILQR 577



 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 30/131 (22%), Positives = 53/131 (40%), Gaps = 5/131 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +  AL+K     +   L+ ++   G  P+      +I    +  + +E L     ++  G
Sbjct: 97  LLGALAKIKHYSQVFSLYKKMHLAGLSPNFFTLNILINCLCNVNRVREGLSAMAGIMRRG 156

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  TY  LIKGL          + +A +  + M   G  PN  TY  + +   R   
Sbjct: 157 YIPDVVTYTSLIKGLCMEHR-----ISEATRLFIRMQKLGCWPNVVTYGTLIKGLCRTGN 211

Query: 213 VDEARGLLQQM 223
           ++ A  L Q+M
Sbjct: 212 INLALKLHQEM 222



 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 37/182 (20%), Positives = 75/182 (41%), Gaps = 20/182 (10%)

Query: 60  FKKVVDEEPTDPRNLQEI--------FHKMRTEGLTNNAVKMFDALSKDG--LTHEALQL 109
           F  +    PT P +  +I         H +       + + MF    K G   + +ALQ 
Sbjct: 24  FSSLFTHSPTIPSSNPQISSANHPKSLHALSERISLQHGLPMFIHNCKKGNITSTQALQF 83

Query: 110 FAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169
           F  +     M  +++   ++ A A      +   ++ +M  +G++PN +T  +LI  L  
Sbjct: 84  FDLM-----MRSIISFNLLLGALAKIKHYSQVFSLYKKMHLAGLSPNFFTLNILINCLC- 137

Query: 170 AADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFV 229
               N   + +    +  ++ +G  P+  TYT++ +      ++ EA  L  +M+  G  
Sbjct: 138 ----NVNRVREGLSAMAGIMRRGYIPDVVTYTSLIKGLCMEHRISEATRLFIRMQKLGCW 193

Query: 230 PD 231
           P+
Sbjct: 194 PN 195


>gi|255660838|gb|ACU25588.1| pentatricopeptide repeat-containing protein [Neosparton
           ephedroides]
          Length = 418

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 109/237 (45%), Gaps = 15/237 (6%)

Query: 2   AATAILRWLLHSPSPKRS-LRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPF 60
           +A+A+   +L +   +RS + + +  + A L+      + +  +  +  + K   P+D  
Sbjct: 47  SASAVFEAILEAKGAQRSDVYVFSGLITAYLESGFLHDALECFR--LTREHKFWVPFDTC 104

Query: 61  KKVVDEEPTDPRNLQEI--FHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIK 114
           +KV+ E     +  + +  F+K   E     ++  F+ L     K+G    A  +F +I 
Sbjct: 105 RKVL-EHFMKLKYFKSVWGFYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDEIT 163

Query: 115 DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174
             G  P VV+   ++  Y   G   E  R+   M  SG+ P+ YTY+VLI GL   +  N
Sbjct: 164 KWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHGSGIQPDVYTYSVLINGLCKESKMN 223

Query: 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
                DA +   EM+G G+ PN  T+T + +   +   +D A    ++M  +GF PD
Sbjct: 224 -----DANELFDEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAMEAYKEMLRQGFSPD 275



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 72/158 (45%), Gaps = 8/158 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E + +M  +G + + +    +   L K+G   +A  L  ++  KG  PD + +T +I+  
Sbjct: 262 EAYKEMLRQGFSPDLITYNTLIYGLCKEGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGS 321

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G  + A +   RM+   +  +   Y  LI GL             A+K L EM+  G
Sbjct: 322 CKEGDLETAFKYKKRMIKENIRLDDVAYTALISGLCREGQSVG-----AEKMLREMLSVG 376

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           ++P+ GTYT +   F +   V     LL++M+  G VP
Sbjct: 377 LKPDNGTYTMIINEFCKKGDVKMGSKLLKEMQRDGHVP 414


>gi|356532716|ref|XP_003534917.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 527

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 83/179 (46%), Gaps = 31/179 (17%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L KD L +EA  L++++  +G  P+V+ ++ +I  +  AGQ  EA  +   M+   
Sbjct: 156 IIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFCLAGQLMEAFGLLNEMILKN 215

Query: 153 VAPNAYTYAVLIKGLA----------------------------AAADGNAKI--LGDAQ 182
           + PN YTY +L+  L                                DG   I  + +A+
Sbjct: 216 INPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAK 275

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           +    MV KG+ PN  +Y  + +   ++++VDEA  LL+++  K  VP+      +LID
Sbjct: 276 QMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPN-TVTYSSLID 333



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 81/149 (54%), Gaps = 6/149 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DAL K+G   EA  L A +  +G  P+VV++  +++ Y   G+ + A ++F  M+  G
Sbjct: 226 LMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKG 285

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V PN Y+Y ++I  L       +K + +A   L E++ K M PN  TY+++ + F +  +
Sbjct: 286 VNPNVYSYNIMIDRLCK-----SKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGR 340

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALID 241
           +  A  LL++M  +G  P +     +L+D
Sbjct: 341 ITSALDLLKEMYHRG-QPADVVTYTSLLD 368



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/139 (33%), Positives = 69/139 (49%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K G T  AL+L   I+D+   P+VV +  +I+         EA  ++  M A G
Sbjct: 121 LLNGLCKIGETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARG 180

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN  TY+ LI G   A       L +A   L EM+ K + PN  TYT + +A  +  K
Sbjct: 181 IFPNVITYSTLIYGFCLAGQ-----LMEAFGLLNEMILKNINPNVYTYTILMDALCKEGK 235

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V EA+ LL  M  +G  P+
Sbjct: 236 VKEAKNLLAVMTKEGVKPN 254



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 76/161 (47%), Gaps = 12/161 (7%)

Query: 74  LQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           L+E+ HK     +  N V    + D   K G    AL L  ++  +G   DVV +T++++
Sbjct: 313 LREVLHK----NMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQPADVVTYTSLLD 368

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
           A        +A  +FM+M   G+ PN YTY  LI GL     G  K   +AQK    ++ 
Sbjct: 369 ALCKNQNLDKATALFMKMKERGIQPNKYTYTALIDGLCKG--GRHK---NAQKLFQHLLV 423

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           KG R N  TY  +     +   +DEA  +  +M+  G +PD
Sbjct: 424 KGCRINVWTYNVMISGLCKEGMLDEALAMKSKMEENGCIPD 464



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 77/156 (49%), Gaps = 6/156 (3%)

Query: 74  LQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           L+E++H+ +   +      + DAL K+    +A  LF ++K++G  P+   +TA+I+   
Sbjct: 348 LKEMYHRGQPADVVT-YTSLLDALCKNQNLDKATALFMKMKERGIQPNKYTYTALIDGLC 406

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G+ K A ++F  +L  G   N +TY V+I GL         +L +A     +M   G 
Sbjct: 407 KGGRHKNAQKLFQHLLVKGCRINVWTYNVMISGLCKEG-----MLDEALAMKSKMEENGC 461

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFV 229
            P+A T+  +  +     + D+A  LL +M AK  +
Sbjct: 462 IPDAVTFEIIIRSLFEKDQNDKAEKLLHEMIAKDLL 497



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 63/157 (40%), Gaps = 32/157 (20%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A+ LF Q++ KG  PD+     +I  +   GQ   +  V  ++L  G  PN  T   L+K
Sbjct: 29  AISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFSFTVLGKILKLGYQPNTITLNTLMK 88

Query: 166 GL----------------------------AAAADGNAKILGD---AQKYLMEMVGKGMR 194
           GL                            A   +G  KI G+   A K L  +  +  R
Sbjct: 89  GLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLCKI-GETRSALKLLRMIEDRSTR 147

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           PN   Y  + +   + + V+EA  L  +M A+G  P+
Sbjct: 148 PNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPN 184


>gi|357154512|ref|XP_003576808.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Brachypodium distachyon]
          Length = 801

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 88/188 (46%), Gaps = 33/188 (17%)

Query: 77  IFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           ++++M + G   N+   + + D L K G+  +AL++F ++ ++G +PDV  +T ++ +  
Sbjct: 201 LYNRMVSSGCLPNSTTYIVLMDGLCKRGMAVDALKMFDEMLERGIVPDVKIYTVLLSSLC 260

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA-------------DGNAKI--- 177
           + G+ ++A R+   M  +G  P+  TY V + GL  A              DG   +   
Sbjct: 261 NEGRIEDAGRLLCSMKENGCPPDEVTYTVFLSGLCKAGRVDEAFHRFELLQDGGFTLGLI 320

Query: 178 --------------LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
                           +   Y  EM+GK + P+   YT +   F  A +  +A  LL +M
Sbjct: 321 GYSCLIDGLFQAGRFDEGLSYYTEMLGKSISPDITLYTILIRRFAEAGRTKDAFLLLDEM 380

Query: 224 KAKGFVPD 231
           K KGFVPD
Sbjct: 381 KDKGFVPD 388



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 74/166 (44%), Gaps = 27/166 (16%)

Query: 89  NAVKMFDAL----------------------SKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           +AV MFDAL                      S  G   EA++ F+++ D    P    + 
Sbjct: 124 DAVAMFDALADARAAGLPAPSAAFRALVLAHSSAGRHQEAVEAFSRMGDFDCRPTAFVYN 183

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
           AV +     G    AL ++ RM++SG  PN+ TY VL+ GL         +  DA K   
Sbjct: 184 AVFQVLVDRGVILLALALYNRMVSSGCLPNSTTYIVLMDGLCKRG-----MAVDALKMFD 238

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           EM+ +G+ P+   YT +  +     ++++A  LL  MK  G  PDE
Sbjct: 239 EMLERGIVPDVKIYTVLLSSLCNEGRIEDAGRLLCSMKENGCPPDE 284



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 69/159 (43%), Gaps = 13/159 (8%)

Query: 97  LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
           L K G   EA   F  ++D G    ++ ++ +I+    AG+  E L  +  ML   ++P+
Sbjct: 294 LCKAGRVDEAFHRFELLQDGGFTLGLIGYSCLIDGLFQAGRFDEGLSYYTEMLGKSISPD 353

Query: 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
              Y +LI+  A A  G  K   DA   L EM  KG  P+   Y  + +A      +D A
Sbjct: 354 ITLYTILIRRFAEA--GRTK---DAFLLLDEMKDKGFVPDTFCYNTLLKALFDVGNIDRA 408

Query: 217 RGLLQQMKAKGFVPDEKA--------VKEALIDKRGQGF 247
           + L+ +M     V D            K+ LIDK  Q F
Sbjct: 409 QSLMSEMLQNNVVLDSTTHNIMICGLCKKGLIDKAMQVF 447



 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 5/124 (4%)

Query: 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
           G T +A  L  ++KDKG +PD   +  +++A    G    A  +   ML + V  ++ T+
Sbjct: 368 GRTKDAFLLLDEMKDKGFVPDTFCYNTLLKALFDVGNIDRAQSLMSEMLQNNVVLDSTTH 427

Query: 161 AVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
            ++I GL         ++  A +   EM   G  P   TY A+ +   RA  ++EAR L 
Sbjct: 428 NIMICGLCKKG-----LIDKAMQVFDEMGEHGCHPTVMTYNALIDGLYRAGMLEEARMLF 482

Query: 221 QQMK 224
            +M+
Sbjct: 483 HKME 486



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 67/154 (43%), Gaps = 7/154 (4%)

Query: 87  TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFM 146
           T +  K+ D + + G   +A +L   I + G +PDVV +  +I     A     ALR+F 
Sbjct: 507 TESLRKLVDGMCQSGQVLKAYKLLRGIIESGVVPDVVTYNTLINGLCKAKNLDGALRLFK 566

Query: 147 RMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEA 206
            +   G++P+  TY  LI GL  A   N     DA      ++  G  P+   Y  +  +
Sbjct: 567 ELQLKGISPDEITYGTLIDGLWRAHREN-----DATMLFQNILRSGGFPSLPIYNTMMRS 621

Query: 207 FVRAQKVDEARGLLQQM--KAKGFVPDEKAVKEA 238
             R +K+ +A  L      K     P+++ +  A
Sbjct: 622 LCRMKKLSQAINLWLDYLPKKYNLSPEDEVIANA 655


>gi|224130398|ref|XP_002320827.1| predicted protein [Populus trichocarpa]
 gi|222861600|gb|EEE99142.1| predicted protein [Populus trichocarpa]
          Length = 775

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/160 (28%), Positives = 77/160 (48%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+F +M  EG+  N V    +   + + G    A+  F + + +G   D V +TA+I A
Sbjct: 439 KELFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINA 498

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           + +    ++A+ +F  ML SG +P+A  Y  LI G + A       + DA   L E+   
Sbjct: 499 FCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGR-----MADASFVLAELKKL 553

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G+RP+   Y  +   F R  K      +L++M+  G  PD
Sbjct: 554 GIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPD 593



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 6/140 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKD-KGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
           + D L K G   E L L  +++  KG  PD + +  +I+ +  AG+ ++   +F  M   
Sbjct: 389 LIDGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKELFDEMNKE 448

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           GVAPN  T   L+ G+          +  A  + +E   +GM+ +A TYTA+  AF    
Sbjct: 449 GVAPNVVTVNTLVGGMCRTGR-----VSSAVNFFVEAQRRGMKGDAVTYTALINAFCNVN 503

Query: 212 KVDEARGLLQQMKAKGFVPD 231
             ++A  L  +M   G  PD
Sbjct: 504 NFEKAMELFNEMLKSGCSPD 523



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 45/169 (26%), Positives = 78/169 (46%), Gaps = 8/169 (4%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F++M   G + +A+    +    S+ G   +A  + A++K  G  PD V +  +I  +
Sbjct: 510 ELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIRPDTVCYNTLIGGF 569

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               +      +   M  +G+ P+  TY  LI    A+ +G+ K    AQK + +M+  G
Sbjct: 570 CRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIA--YASKNGDLKF---AQKVMRKMIKAG 624

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           + P   TY AV  A+      +EA  + + MKA   VP    +   LI+
Sbjct: 625 VVPTVATYGAVINAYCLNGNGNEAMEIFKDMKAASKVPPNTVIYNILIN 673



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/160 (28%), Positives = 72/160 (45%), Gaps = 9/160 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+  +M   GL  + +    +    SK+G    A ++  ++   G +P V  + AVI AY
Sbjct: 580 EMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQKVMRKMIKAGVVPTVATYGAVINAY 639

Query: 133 ASAGQGKEALRVFMRM-LASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              G G EA+ +F  M  AS V PN   Y +LI  L      N K+   A   + +M   
Sbjct: 640 CLNGNGNEAMEIFKDMKAASKVPPNTVIYNILINSLCK----NNKV-KSAVSLMEDMKIW 694

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G+ PN  TY A+F+     + +++    + +M      PD
Sbjct: 695 GVTPNTTTYNAIFKGLRDEKDLEKVFEFMDRMIEHACNPD 734



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 8/130 (6%)

Query: 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASA-GQGKEALRVFMRMLASGVAPNAYTYAV 162
           H   ++  ++++ G  PD + +  +I AYAS  G  K A +V  +M+ +GV P   TY  
Sbjct: 576 HRVFEMLKEMEEAGLKPDTITYNTLI-AYASKNGDLKFAQKVMRKMIKAGVVPTVATYGA 634

Query: 163 LIKGLAAAADGNAKILGDAQKYLMEM-VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221
           +I       +GN     +A +   +M     + PN   Y  +  +  +  KV  A  L++
Sbjct: 635 VINAYCLNGNGN-----EAMEIFKDMKAASKVPPNTVIYNILINSLCKNNKVKSAVSLME 689

Query: 222 QMKAKGFVPD 231
            MK  G  P+
Sbjct: 690 DMKIWGVTPN 699



 Score = 38.5 bits (88), Expect = 2.5,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 4/107 (3%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMP-DVVAH 125
           D +  Q++  KM   G+         + +A   +G  +EA+++F  +K    +P + V +
Sbjct: 609 DLKFAQKVMRKMIKAGVVPTVATYGAVINAYCLNGNGNEAMEIFKDMKAASKVPPNTVIY 668

Query: 126 TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172
             +I +     + K A+ +   M   GV PN  TY  + KGL    D
Sbjct: 669 NILINSLCKNNKVKSAVSLMEDMKIWGVTPNTTTYNAIFKGLRDEKD 715



 Score = 38.5 bits (88), Expect = 2.7,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 63/149 (42%), Gaps = 14/149 (9%)

Query: 92  KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
           ++   L ++  T+    LF ++   G + +  A  +++   A  G       +  +M+  
Sbjct: 275 RLITRLCRNRKTNRGWDLFTEMIKLGAVLESAACNSLLTGLAREGNFNRMNELMEKMVEM 334

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK--------GMRPNAGTYTAV 203
            + PN  T+ +LI  +        + + DA + L +M G          + P+   Y  +
Sbjct: 335 DIQPNVVTFGILINHMC-----KFRRVDDALEVLEKMSGGKESGGISVSVEPDVVIYNTL 389

Query: 204 FEAFVRAQKVDEARGLLQQMKA-KGFVPD 231
            +   +  +  E  GL+++M++ KG  PD
Sbjct: 390 IDGLCKVGRQQEGLGLMERMRSQKGCAPD 418


>gi|147788022|emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]
          Length = 585

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 80/173 (46%), Gaps = 11/173 (6%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +FH+M   G   +      + D L K     EA+ L   I+     PD+  +T VI+   
Sbjct: 404 LFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMC 463

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG+ + A  +F  + + G+ PN  TY ++I GL         +L +A K  MEM G G 
Sbjct: 464 RAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRG-----LLDEANKLFMEMDGNGC 518

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK---EALIDKR 243
            P+  TY  + +  ++ ++   A  LLQ+M A+GF  D        E L D +
Sbjct: 519 SPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLLVEMLCDDK 571



 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 83/189 (43%), Gaps = 33/189 (17%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
            +F KM  EG   N V    + + L K G T+ A++L   ++     PDVV +T++I++ 
Sbjct: 158 HLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSL 217

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADG-----------NAKILGD- 180
               Q  EA  +F +M+  G++P+ +TY  LI  L    +            N+KI+ D 
Sbjct: 218 CKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDV 277

Query: 181 ------------------AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
                             A   +  M+ +G+ PN  TY A+ +      ++DEA  +   
Sbjct: 278 VIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDT 337

Query: 223 MKAKGFVPD 231
           M   G+ P+
Sbjct: 338 MVHNGYAPN 346



 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 8/144 (5%)

Query: 88  NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMR 147
           N  +  F  L++ G    A  + A+I   G  PD    T +I      G+  +AL +F +
Sbjct: 106 NILINSFCHLNRPGF---AFSVLAKILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDK 162

Query: 148 MLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAF 207
           M+  G  PN  TY  LI GL    + NA I     + L  M     +P+   YT++ ++ 
Sbjct: 163 MIGEGFQPNVVTYGTLINGLCKVGNTNAAI-----RLLRSMEQGNCQPDVVVYTSIIDSL 217

Query: 208 VRAQKVDEARGLLQQMKAKGFVPD 231
            + ++V EA  L  +M  +G  PD
Sbjct: 218 CKDRQVTEAFNLFSKMVGQGISPD 241



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 65/138 (47%), Gaps = 7/138 (5%)

Query: 95  DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           DAL K+G   EA  +   +  +G  P+VV + A+++ +    +  EA++VF  M+ +G A
Sbjct: 285 DALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYA 344

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLM-EMVGKGMRPNAGTYTAVFEAFVRAQKV 213
           PN  +Y  LI G             D   YL  EM  K + PN  TY  +        ++
Sbjct: 345 PNVISYNTLINGYCKIQR------MDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRL 398

Query: 214 DEARGLLQQMKAKGFVPD 231
            +A  L  +M A G +PD
Sbjct: 399 QDAIALFHEMVAHGQIPD 416



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 91/215 (42%), Gaps = 21/215 (9%)

Query: 21  RITNTRVNATLQRSLSSSSDQP-TKKYVNTKSKLPPPYDPFKKVVDEEPTDPRNLQEIFH 79
           ++ NT     L RS+   + QP    Y +    L           D + T+  NL   F 
Sbjct: 184 KVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCK---------DRQVTEAFNL---FS 231

Query: 80  KMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           KM  +G++ +      +  +L           L  Q+ +   MPDVV  + V++A    G
Sbjct: 232 KMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEG 291

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196
           +  EA  V   M+  GV PN  TY  L+ G    ++     + +A K    MV  G  PN
Sbjct: 292 KITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSE-----MDEAVKVFDTMVHNGYAPN 346

Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             +Y  +   + + Q++D+A  L ++M  K  +P+
Sbjct: 347 VISYNTLINGYCKIQRMDKATYLFEEMCQKELIPN 381



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 69/158 (43%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M  + L  N V    +   L   G   +A+ LF ++   G +PD+  +  +++   
Sbjct: 369 LFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLC 428

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
                 EA+ +   +  S + P+   Y ++I G+  A +  A     A+     +  KG+
Sbjct: 429 KKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEA-----ARDIFSNLSSKGL 483

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           RPN  TYT +     R   +DEA  L  +M   G  PD
Sbjct: 484 RPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPD 521



 Score = 43.5 bits (101), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 3/97 (3%)

Query: 75  QEIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           ++IF  + ++GL  N      M + L + GL  EA +LF ++   G  PD   +  + + 
Sbjct: 472 RDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQG 531

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
                +   A+++   MLA G + +  T  +L++ L 
Sbjct: 532 LLQNKEALRAIQLLQEMLARGFSADVSTTTLLVEMLC 568



 Score = 40.4 bits (93), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 28/127 (22%), Positives = 53/127 (41%), Gaps = 5/127 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +AL  F ++      P  V    ++ + A   Q      +  +M + G+ P+ YT  +LI
Sbjct: 50  DALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNILI 109

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
                         G A   L +++  G++P+  T+T +        K+ +A  L  +M 
Sbjct: 110 NSFCHLNRP-----GFAFSVLAKILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKMI 164

Query: 225 AKGFVPD 231
            +GF P+
Sbjct: 165 GEGFQPN 171


>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
 gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
          Length = 581

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 68/139 (48%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L K G   EAL++  ++ +KG  PDV  +T +++    AG+  EA  +F +M+  G
Sbjct: 16  IISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEADELFHKMIERG 75

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            + N   Y  LI GL    D N +    A K L EM  KG  P+  TY  +     R  K
Sbjct: 76  CSANTVAYNALINGL--CKDENIE---RAYKLLEEMASKGYEPDNITYNTILSGLCRMGK 130

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V EA+     M ++G+ PD
Sbjct: 131 VSEAKQFFDSMPSRGYSPD 149



 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 82/168 (48%), Gaps = 13/168 (7%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   +   T EA++LF  +  KG+MPD V + +++   A      EA  +F +M+ SG
Sbjct: 193 LIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDSG 252

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            APN  TY++++ G      GN   +    +   EM  K   P+     AV +   +A+K
Sbjct: 253 CAPNGATYSIVLSGHCRV--GN---MARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKK 307

Query: 213 VDEARGLLQQMKAKGFVPD--------EKAVKEALIDKRGQGFRGVIN 252
           VD+A  +L++M   G VPD        +   K  L+DK  + F  +++
Sbjct: 308 VDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVD 355



 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 77/165 (46%), Gaps = 16/165 (9%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            E+FHKM   G + N V    + + L KD     A +L  ++  KG+ PD + +  ++  
Sbjct: 65  DELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSG 124

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL-----AAAADGNAKILGDAQKYLM 186
               G+  EA + F  M + G +P+   Y  L+  L      A A G  K         M
Sbjct: 125 LCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKT--------M 176

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +M  + + P+  TY  + + F R +K DEA  L + + AKG++PD
Sbjct: 177 DMADRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPD 221



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 79/162 (48%), Gaps = 10/162 (6%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLF--AQIKDKGHMPDVVAHTAVI 129
           ++ F  M + G + + V    + DAL K+G   EA  LF    + D+   PD++ +  +I
Sbjct: 135 KQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDLITYNTLI 194

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
           + +    +  EA+++F  ++A G  P+  TY  ++ GLA  ++     + +A++   +MV
Sbjct: 195 DGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSN-----MDEAEEMFKKMV 249

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             G  PN  TY+ V     R   +     L ++M  K F PD
Sbjct: 250 DSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPD 291



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K  L  +A +LF+ + D G  PD+V+++ V+       +  +A  +F RM+   
Sbjct: 333 LLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERK 392

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+  T+ +L+ GL  A       L +A+  L  M    + P+  T T +     R ++
Sbjct: 393 LVPDVVTFNILMDGLCKAGK-----LDEAKDLLDVMSEHNVLPDGVTCTTLMHGLCRDKR 447

Query: 213 VDEARGLLQQMKAKGFVPD 231
            DEA  L Q M  KG V D
Sbjct: 448 TDEAVRLFQYMVEKGTVAD 466



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 5/117 (4%)

Query: 115 DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174
           +KG  PDVV ++ +I      G+  EAL +   M   GV P+  TY +++  L  A    
Sbjct: 3   EKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGK-- 60

Query: 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              + +A +   +M+ +G   N   Y A+     + + ++ A  LL++M +KG+ PD
Sbjct: 61  ---VDEADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPD 114



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 70/155 (45%), Gaps = 9/155 (5%)

Query: 79  HKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQG 138
           H +  +G+T     +   L +D  T EA++LF  + +KG + DV+ H  V+      G+ 
Sbjct: 426 HNVLPDGVT--CTTLMHGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCREGKL 483

Query: 139 KEALRVFMRMLASG--VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196
            +AL  F  M+ S    +P+  TY  L+  L  A       +  A  Y  +M G G  P+
Sbjct: 484 AQALLFFKSMVKSDGEFSPDVVTYTTLVNALIEAGR-----VDQAVDYFQQMTGSGCAPD 538

Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              Y  +     +  +  +A  L Q MK KGF+ D
Sbjct: 539 YVAYNTLMNGLRKQGRHIQADRLTQAMKEKGFLSD 573



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 70/146 (47%), Gaps = 7/146 (4%)

Query: 86  LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVF 145
           L  NAV   D L K     +A ++  ++   G +PDVV +  +++         +A  +F
Sbjct: 293 LLCNAV--IDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELF 350

Query: 146 MRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFE 205
             M+ +G AP+  +Y+V++ GL          + DA+     M+ + + P+  T+  + +
Sbjct: 351 STMVDNGCAPDIVSYSVVLNGLC-----KTNKVHDARVLFDRMIERKLVPDVVTFNILMD 405

Query: 206 AFVRAQKVDEARGLLQQMKAKGFVPD 231
              +A K+DEA+ LL  M     +PD
Sbjct: 406 GLCKAGKLDEAKDLLDVMSEHNVLPD 431



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 71/175 (40%), Gaps = 10/175 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M    L  + V    + D L K G   EA  L   + +   +PD V  T ++    
Sbjct: 384 LFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLMHGLC 443

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG- 192
              +  EA+R+F  M+  G   +   + +++ GL          L  A  +   MV    
Sbjct: 444 RDKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCREGK-----LAQALLFFKSMVKSDG 498

Query: 193 -MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
              P+  TYT +  A + A +VD+A    QQM   G  PD  A    +   R QG
Sbjct: 499 EFSPDVVTYTTLVNALIEAGRVDQAVDYFQQMTGSGCAPDYVAYNTLMNGLRKQG 553


>gi|359488005|ref|XP_002263693.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 586

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 80/173 (46%), Gaps = 11/173 (6%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +FH+M   G   +      + D L K     EA+ L   I+     PD+  +T VI+   
Sbjct: 405 LFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMC 464

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG+ + A  +F  + + G+ PN  TY ++I GL         +L +A K  MEM G G 
Sbjct: 465 RAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRG-----LLDEANKLFMEMDGNGC 519

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK---EALIDKR 243
            P+  TY  + +  ++ ++   A  LLQ+M A+GF  D        E L D +
Sbjct: 520 SPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLLVEMLCDDK 572



 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 83/189 (43%), Gaps = 33/189 (17%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
            +F KM  EG   N V    + + L K G T+ A++L   ++     PDVV +T++I++ 
Sbjct: 160 HLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSL 219

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADG-----------NAKILGD- 180
               Q  EA  +F +M+  G++P+ +TY  LI  L    +            N+KI+ D 
Sbjct: 220 CKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDV 279

Query: 181 ------------------AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
                             A   +  M+ +G+ PN  TY A+ +      ++DEA  +   
Sbjct: 280 VIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDT 339

Query: 223 MKAKGFVPD 231
           M   G+ P+
Sbjct: 340 MVHNGYAPN 348



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 67/144 (46%), Gaps = 8/144 (5%)

Query: 88  NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMR 147
           N  +  F  L++ G    A  + A+I   GH PD    T +I      G+  +AL +F +
Sbjct: 108 NILINSFCHLNRLGF---AFSVLAKILKLGHQPDTATFTTLIRGLCVEGKIGDALHLFDK 164

Query: 148 MLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAF 207
           M+  G  PN  TY  LI GL    + NA I     + L  M     +P+   YT++ ++ 
Sbjct: 165 MIGEGFQPNVVTYGTLINGLCKVGNTNAAI-----RLLRSMEQGNCQPDVVVYTSIIDSL 219

Query: 208 VRAQKVDEARGLLQQMKAKGFVPD 231
            + ++V EA  L  +M  +G  PD
Sbjct: 220 CKDRQVTEAFNLFSKMVGQGISPD 243



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 91/215 (42%), Gaps = 21/215 (9%)

Query: 21  RITNTRVNATLQRSLSSSSDQP-TKKYVNTKSKLPPPYDPFKKVVDEEPTDPRNLQEIFH 79
           ++ NT     L RS+   + QP    Y +    L           D + T+  NL   F 
Sbjct: 186 KVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCK---------DRQVTEAFNL---FS 233

Query: 80  KMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           KM  +G++ +      +  +L           L  Q+ +   MPDVV  + V++A    G
Sbjct: 234 KMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEG 293

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196
           +  EA  V   M+  GV PN  TY  L+ G    ++     + +A K    MV  G  PN
Sbjct: 294 KITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSE-----MDEAVKVFDTMVHNGYAPN 348

Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             +Y  +   + + Q++D+A  L ++M  K  +P+
Sbjct: 349 VISYNTLINGYCKIQRMDKATYLFEEMCQKELIPN 383



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 65/138 (47%), Gaps = 8/138 (5%)

Query: 95  DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           DAL K+G   EA  +   +  +G  P+VV + A+++ +    +  EA++VF  M+ +G A
Sbjct: 287 DALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYA 346

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLM-EMVGKGMRPNAGTYTAVFEAFVRAQKV 213
           PN  +Y  LI G             D   YL  EM  K + PN  TY  +        ++
Sbjct: 347 PNVISYNTLINGYCKIQR------MDKATYLFEEMCQKELIPNTVTYNTLMHX-CHVGRL 399

Query: 214 DEARGLLQQMKAKGFVPD 231
            +A  L  +M A G +PD
Sbjct: 400 QDAIALFHEMVAHGQIPD 417



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 70/158 (44%), Gaps = 9/158 (5%)

Query: 77  IFHKMRTEGLTNNAVKMFDAL---SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M  + L  N V  ++ L      G   +A+ LF ++   G +PD+  +  +++   
Sbjct: 371 LFEEMCQKELIPNTVT-YNTLMHXCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLC 429

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
                 EA+ +   +  S + P+   Y ++I G+  A +  A     A+     +  KG+
Sbjct: 430 KKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEA-----ARDIFSNLSSKGL 484

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           RPN  TYT +     R   +DEA  L  +M   G  PD
Sbjct: 485 RPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPD 522



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 5/136 (3%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L  +G   +AL LF ++  +G  P+VV +  +I      G    A+R+   M      P
Sbjct: 148 GLCVEGKIGDALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQP 207

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +   Y  +I  L        + + +A     +MVG+G+ P+  TYT++  +     +   
Sbjct: 208 DVVVYTSIIDSLC-----KDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKH 262

Query: 216 ARGLLQQMKAKGFVPD 231
              LL QM     +PD
Sbjct: 263 VTTLLNQMINSKIMPD 278



 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 3/97 (3%)

Query: 75  QEIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           ++IF  + ++GL  N      M + L + GL  EA +LF ++   G  PD   +  + + 
Sbjct: 473 RDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQG 532

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
                +   A+++   MLA G + +  T  +L++ L 
Sbjct: 533 LLQNKEALRAIQLLQEMLARGFSADVSTTTLLVEMLC 569



 Score = 42.0 bits (97), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 29/127 (22%), Positives = 54/127 (42%), Gaps = 5/127 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +AL  F ++      P  V    ++ + A   Q      +  +M + G+ P+ YT  +LI
Sbjct: 52  DALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNILI 111

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
                    +   LG A   L +++  G +P+  T+T +        K+ +A  L  +M 
Sbjct: 112 NSFC-----HLNRLGFAFSVLAKILKLGHQPDTATFTTLIRGLCVEGKIGDALHLFDKMI 166

Query: 225 AKGFVPD 231
            +GF P+
Sbjct: 167 GEGFQPN 173


>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
          Length = 814

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 83/174 (47%), Gaps = 13/174 (7%)

Query: 77  IFHKMRTEGLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +MR   +  + V +     +L K G   EA  +F  +  KG  PDV ++  ++  YA
Sbjct: 311 VFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYA 370

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
           + G   +   +F  ML  G+AP+ YT+ VLIK  A     N  +L  A     EM   G+
Sbjct: 371 TKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYA-----NCGMLDKAMIIFNEMRDHGV 425

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGF 247
           +P+  TY  V  A  R  K+D+A     QM  +G  PD+ A    LI    QGF
Sbjct: 426 KPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYN-CLI----QGF 474



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 82/172 (47%), Gaps = 9/172 (5%)

Query: 73  NLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           ++ ++F  M  +G+  +      +  A +  G+  +A+ +F +++D G  PDVV +  VI
Sbjct: 377 DMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVI 436

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
            A    G+  +A+  F +M+  GVAP+ Y Y  LI+G           L  A++ + E++
Sbjct: 437 AALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGS-----LLKAKELISEIM 491

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
             GM  +   ++++     +  +V +A+ +       G  PD   V   L+D
Sbjct: 492 NNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPD-AVVYSMLMD 542



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 74/160 (46%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+  ++   G+  + V    + + L K G   +A  +F    + G  PD V ++ +++ 
Sbjct: 484 KELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDG 543

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y   G+ ++ALRVF  M+++G+ PN   Y  L+ G           + +      EM+ +
Sbjct: 544 YCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGR-----IDEGLSLFREMLQR 598

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G++P+   Y+ + +   +A +   A+    +M   G   D
Sbjct: 599 GIKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTESGIAMD 638



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 65/134 (48%), Gaps = 5/134 (3%)

Query: 98  SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA 157
           S  G   EA+++F +++    +PDVV  + ++ +    G+ KEA  VF  M   G  P+ 
Sbjct: 300 SSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDV 359

Query: 158 YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
           ++Y +++ G A         L D       M+G G+ P+  T+  + +A+     +D+A 
Sbjct: 360 FSYNIMLNGYATKG-----CLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAM 414

Query: 218 GLLQQMKAKGFVPD 231
            +  +M+  G  PD
Sbjct: 415 IIFNEMRDHGVKPD 428



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 83/182 (45%), Gaps = 17/182 (9%)

Query: 76  EIFHKMRTEGLTNNAVKMFDALSKDGLTHEAL----QLFAQIKDKGHMPDVVAHTAVIEA 131
           E F++M  +G+  +    ++ L +   TH +L    +L ++I + G   D+V  +++I  
Sbjct: 450 EKFNQMIDQGVAPDKYA-YNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINN 508

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM---EM 188
               G+  +A  +F   +  G+ P+A  Y++L+ G          ++G  +K L     M
Sbjct: 509 LCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYC--------LVGKMEKALRVFDAM 560

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFR 248
           V  G+ PN   Y  +   + +  ++DE   L ++M  +G  P    +   +ID   Q  R
Sbjct: 561 VSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKP-STILYSIIIDGLFQAGR 619

Query: 249 GV 250
            V
Sbjct: 620 TV 621



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   K+G  ++A  LF ++  +G  PD+V + +V+ A   A    +A     +M+   
Sbjct: 225 VIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKR 284

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V PN +TY  LI G ++   G  K   +A +   EM    + P+  T + +  +  +  K
Sbjct: 285 VLPNNWTYNNLIYGYSST--GQWK---EAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGK 339

Query: 213 VDEARGLLQQMKAKGFVPD 231
           + EAR +   M  KG  PD
Sbjct: 340 IKEARDVFDTMAMKGQNPD 358



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 67/141 (47%), Gaps = 7/141 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHM--PDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           +  +L   G + +A  L   + + G +  P+VVA+  VI+ +   G   +A  +F  M+ 
Sbjct: 188 LLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQ 247

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
            G+ P+  TY  ++  L       A+ +  A+ +L +MV K + PN  TY  +   +   
Sbjct: 248 RGIPPDLVTYNSVVHALC-----KARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSST 302

Query: 211 QKVDEARGLLQQMKAKGFVPD 231
            +  EA  + ++M+    +PD
Sbjct: 303 GQWKEAVRVFKEMRRHSILPD 323



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 73/172 (42%), Gaps = 33/172 (19%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFM-RMLAS 151
           + D  ++      AL  F Q+   G   +++    ++E +  A +  EAL + + R    
Sbjct: 117 LMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALDILLHRTPEL 176

Query: 152 GVAPNAYTYAVLIKGLA-----AAADGNAKIL------------------------GDAQ 182
           G  P+ ++Y++L+K L        AD   +++                        GD  
Sbjct: 177 GCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVN 236

Query: 183 K---YLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           K      EMV +G+ P+  TY +V  A  +A+ +D+A   L+QM  K  +P+
Sbjct: 237 KACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPN 288



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 79/187 (42%), Gaps = 16/187 (8%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F  M + G+  N V    + +   K G   E L LF ++  +G  P  + ++ +I+   
Sbjct: 556 VFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLF 615

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG+   A   F  M  SG+A +  TY ++++GL        +   +A     E+    +
Sbjct: 616 QAGRTVPAKVKFHEMTESGIAMDICTYNIVLRGLF-----KNRCFDEAIFLFKELRAMNV 670

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD--------EKAVKEALIDKRGQ 245
           + N  T   + +   + ++V+EA+ L   +     VP            +KE L+++   
Sbjct: 671 KINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAED 730

Query: 246 GFRGVIN 252
            F  + N
Sbjct: 731 MFSSMQN 737


>gi|363543233|ref|NP_001241831.1| uncharacterized protein LOC100857030 [Zea mays]
 gi|224033903|gb|ACN36027.1| unknown [Zea mays]
          Length = 655

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 71/139 (51%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   ++GL    ++L  Q+ ++G MPDV+ +T VI  +   G   EA+ +   M A G
Sbjct: 373 LVDFFCQNGLVDRVIELLEQMLERGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACG 432

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN  +Y +++KGL +     A+   DA+  + +M+ +G   N  T+  +     +   
Sbjct: 433 CKPNTISYTIVLKGLCS-----AERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGL 487

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V++A  LL+QM   G  PD
Sbjct: 488 VEQAIELLKQMLVNGCSPD 506



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 79/180 (43%), Gaps = 16/180 (8%)

Query: 74  LQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           +QE+  +M       N V    +   L ++GL     ++ AQ+ + G  PD+  +  +I+
Sbjct: 246 VQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIID 305

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
                G  + A  +  RM + G+ PN   Y  L+KGL +A         + ++ L EM  
Sbjct: 306 GICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWE-----ETEELLAEMFD 360

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD--------EKAVKEALIDK 242
           K    +  T+  + + F +   VD    LL+QM  +G +PD            KE LID+
Sbjct: 361 KDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLERGCMPDVITYTTVINGFCKEGLIDE 420



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 67/120 (55%), Gaps = 8/120 (6%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+ + M  +G++ N +    +  ALS++G  ++ +Q+F  I+D     D V + AVI + 
Sbjct: 528 ELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSL 587

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+ + A+     M++SG  PN  TY +LI+GL  A++G  K   +AQ+ L E+  KG
Sbjct: 588 CKRGETERAIEFLAYMVSSGCVPNESTYTILIRGL--ASEGFVK---EAQEMLTELCSKG 642



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 80/176 (45%), Gaps = 8/176 (4%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +++  +M  +G   N +    + + L K GL  +A++L  Q+   G  PD+++++ VI+ 
Sbjct: 457 EDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDG 516

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              AG+  EAL +   M+  G++PN   Y+ +   L+     N  I     +    +   
Sbjct: 517 LGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVI-----QMFDNIQDT 571

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGF 247
            +R +A  Y AV  +  +  + + A   L  M + G VP+E      +     +GF
Sbjct: 572 TIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGF 627



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 57/139 (41%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +A  + G    A+++   +  +G   DV     V+ A    G   EAL +   + + G
Sbjct: 163 ILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDEALHLLRDLPSFG 222

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  +Y  ++KGL       AK  G  Q+ + EMV     PN  T+  +     R   
Sbjct: 223 CEPDVVSYNAVLKGLCM-----AKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGL 277

Query: 213 VDEARGLLQQMKAKGFVPD 231
            +    +L QM   G  PD
Sbjct: 278 FERVHEVLAQMVEHGCTPD 296



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/143 (23%), Positives = 58/143 (40%), Gaps = 5/143 (3%)

Query: 89  NAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRM 148
           N   + +A+   G   EAL L   +   G  PDVV++ AV++    A +      +   M
Sbjct: 194 NCNLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEM 253

Query: 149 LASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFV 208
           +     PN  T+  LI  L         +     + L +MV  G  P+   Y  + +   
Sbjct: 254 VRMACPPNIVTFNTLISYLCRNG-----LFERVHEVLAQMVEHGCTPDIRMYATIIDGIC 308

Query: 209 RAQKVDEARGLLQQMKAKGFVPD 231
           +   ++ A  +L +M + G  P+
Sbjct: 309 KEGHLEVAHEILNRMPSYGLKPN 331



 Score = 44.7 bits (104), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 48/107 (44%), Gaps = 8/107 (7%)

Query: 125 HTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKY 184
           + A++  Y  AGQ + A R+     A  V PNAYTY  +++ L A        + DA   
Sbjct: 93  YNAMVAGYCRAGQLESARRL---AAAVPVPPNAYTYFPVVRALCARGR-----IADALAV 144

Query: 185 LMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           L EM  +G  P    Y  + EA  R      A  +L+ + A+G   D
Sbjct: 145 LDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALD 191


>gi|115480461|ref|NP_001063824.1| Os09g0542800 [Oryza sativa Japonica Group]
 gi|32526676|dbj|BAC79199.1| chloroplast RNA processing 1 -like protein [Oryza sativa Japonica
           Group]
 gi|113632057|dbj|BAF25738.1| Os09g0542800 [Oryza sativa Japonica Group]
 gi|125606498|gb|EAZ45534.1| hypothetical protein OsJ_30195 [Oryza sativa Japonica Group]
 gi|215768653|dbj|BAH00882.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 543

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 78/165 (47%), Gaps = 10/165 (6%)

Query: 71  PRNLQEIFHKMRTEGL----TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           P    ++F +M   G           +  ALSK  L  EA  +F   K     PDVV +T
Sbjct: 195 PSEASDLFRRMEEYGAGAPDPATLASLLGALSKKRLASEAQAMFDSYKSV-FTPDVVLYT 253

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
            ++ A+  +G+  EA RVF  M  +GV PN YTY  +I  +  A       +  AQ+ L 
Sbjct: 254 TLVHAWCRSGRLNEAERVFAEMQQAGVTPNVYTYTAVIDAMYRAGQ-----VPRAQELLC 308

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +M+  G  PN  T+ A+  A V+A + ++   +  QM+  G  PD
Sbjct: 309 QMIDSGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQLGCEPD 353



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 75/160 (46%), Gaps = 6/160 (3%)

Query: 75  QEIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +F +M+  G+T N      + DA+ + G    A +L  Q+ D G  P+     A++ A
Sbjct: 269 ERVFAEMQQAGVTPNVYTYTAVIDAMYRAGQVPRAQELLCQMIDSGCPPNTATFNAIMRA 328

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +  AG+ ++ L+V  +M   G  P+  TY  L++        N   L  A K L  M+ K
Sbjct: 329 HVKAGRSEQVLQVHNQMRQLGCEPDIITYNFLMETHCGKGQSN---LDAAMKMLTRMIAK 385

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G  P+  T+  + +  +    V+ AR L ++M+     P+
Sbjct: 386 GCIPDCHTFNPMLKLVLVLGNVNAARKLYERMQELQCKPN 425



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 90/210 (42%), Gaps = 40/210 (19%)

Query: 75  QEIFHKMRTEGLTNNAVKMFDALS----KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           QE+  +M   G   N    F+A+     K G + + LQ+  Q++  G  PD++ +  ++E
Sbjct: 304 QELLCQMIDSGCPPNTAT-FNAIMRAHVKAGRSEQVLQVHNQMRQLGCEPDIITYNFLME 362

Query: 131 AYASAGQGK--EALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNA--KILGDAQKYL- 185
            +   GQ     A+++  RM+A G  P+ +T+  ++K +    + NA  K+    Q+   
Sbjct: 363 THCGKGQSNLDAAMKMLTRMIAKGCIPDCHTFNPMLKLVLVLGNVNAARKLYERMQELQC 422

Query: 186 -------------------MEMV--------GKGMRPNAGTYTAVFEAFVRAQKVDEARG 218
                              M+MV         +G+ PN  TY A+ EAF        A  
Sbjct: 423 KPNVVTYNLLMRLFNLEKSMDMVLRIKKDMDAQGVEPNVNTYAALIEAFCGRGNWKRAHM 482

Query: 219 LLQQMKAKGFVPDEKAVKE---ALIDKRGQ 245
            L++M  +  +   K V +   AL+ K GQ
Sbjct: 483 TLREMVEEKALKPTKPVYDMVLALLRKAGQ 512



 Score = 46.2 bits (108), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 6/130 (4%)

Query: 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
           G  + A +L+ ++++    P+VV +  ++  +         LR+   M A GV PN  TY
Sbjct: 405 GNVNAARKLYERMQELQCKPNVVTYNLLMRLFNLEKSMDMVLRIKKDMDAQGVEPNVNTY 464

Query: 161 AVLIKGLAAAADGNAKILGDAQKYLMEMV-GKGMRPNAGTYTAVFEAFVRAQKVDEARGL 219
           A LI+  A    GN K    A   L EMV  K ++P    Y  V     +A ++     L
Sbjct: 465 AALIE--AFCGRGNWK---RAHMTLREMVEEKALKPTKPVYDMVLALLRKAGQLRRHEEL 519

Query: 220 LQQMKAKGFV 229
           ++ M  +GF+
Sbjct: 520 VEMMVDRGFI 529


>gi|410109885|gb|AFV61022.1| pentatricopeptide repeat-containing protein 11, partial
           [Coelocarpum swinglei]
          Length = 429

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 109/236 (46%), Gaps = 13/236 (5%)

Query: 2   AATAILRWLLHSPSPKRS-LRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPF 60
           +A+A+   +L +   +RS + + +  + A L+      + +  +  +  + K   P+D  
Sbjct: 51  SASAVFAAILETQGTQRSDIYVFSGLITAYLESGFLRDAIECYR--LTREHKFWVPFDTC 108

Query: 61  KKVVDE-EPTDPRNLQEIFHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIKD 115
           +KV++         L   F+K   E     ++  F+ L     K+G    AL +F  I  
Sbjct: 109 RKVLEHLMKLKYFKLVWXFYKEILECGYPASLYFFNILMHRFCKEGDIRVALSVFDAITK 168

Query: 116 KGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNA 175
            G  P VV+   ++  Y   G   E  R+   M ASGV P+ YTY+VLI GL   +    
Sbjct: 169 WGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESK--- 225

Query: 176 KILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             + DA +   EM+ KG+ PN  T+T + +   +  +VD A  + +QM ++   PD
Sbjct: 226 --MDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEVYKQMLSQSLSPD 279



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 83/201 (41%), Gaps = 35/201 (17%)

Query: 63  VVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM 119
           +  E   D  N  E+F +M  +GL  N V    + D   K+G    A++++ Q+  +   
Sbjct: 220 LCKESKMDDAN--ELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEVYKQMLSQSLS 277

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD------- 172
           PD++ +  +I      G  K+A  +   M   G+ P+  +Y  LI G     D       
Sbjct: 278 PDLITYNTLIYGLCKKGDLKQAQDLIDEMRMKGLKPDKISYTTLIDGCCKEGDLETAFEH 337

Query: 173 ---------------GNAKILG--------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
                            A I G        DA+K L EM+  G+RP+ GTYT +   F +
Sbjct: 338 RKRMIQENIRLDDVAYTALISGLCQEGRSIDAEKMLREMLSVGLRPDTGTYTMIINEFCK 397

Query: 210 AQKVDEARGLLQQMKAKGFVP 230
              V     LL++M+  G VP
Sbjct: 398 KGDVWTGSKLLKEMQRDGHVP 418



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 66/124 (53%), Gaps = 5/124 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K+    +A +LF ++ DKG +P+ V  T +I+ +   G+   A+ V+ +ML+  
Sbjct: 216 LINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEVYKQMLSQS 275

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           ++P+  TY  LI GL    D     L  AQ  + EM  KG++P+  +YT + +   +   
Sbjct: 276 LSPDLITYNTLIYGLCKKGD-----LKQAQDLIDEMRMKGLKPDKISYTTLIDGCCKEGD 330

Query: 213 VDEA 216
           ++ A
Sbjct: 331 LETA 334


>gi|357121285|ref|XP_003562351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 624

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 70/139 (50%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   ++GL    ++L  Q+ + G MPDV+ +T VI  +   G   EA+ +   M + G
Sbjct: 342 LVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKNMPSCG 401

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN  +Y +++KGL +      +   DA++ +  M+ +G  PN  T+  +     +   
Sbjct: 402 CKPNTISYTIVLKGLCS-----TERWVDAEELMSRMIQQGCLPNPVTFNTIINFLCKKGL 456

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V++A  LL+QM   G  PD
Sbjct: 457 VEQAIELLKQMLVNGCNPD 475



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 91/205 (44%), Gaps = 43/205 (20%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+  +M  +G   N V    + + L K GL  +A++L  Q+   G  PD+++++ VI+ 
Sbjct: 426 EELMSRMIQQGCLPNPVTFNTIINFLCKKGLVEQAIELLKQMLVNGCNPDLISYSTVIDG 485

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADG-------------NAKIL 178
              AG+ +EAL +   M+  G+ PN  TY+ +    A A +G             +A I 
Sbjct: 486 LGKAGKTEEALELLNVMINKGITPNVITYSSM--AFALAREGRIDKVIQMFDNIQDATIR 543

Query: 179 GDAQKY-------------------LMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGL 219
            DA  Y                   L  MV  G  PN  TYTA+ +       + EA+ L
Sbjct: 544 SDAVLYNAVISSLCKRRETDLAIDFLAYMVSNGCMPNESTYTALIKGLASEGLLCEAQDL 603

Query: 220 LQQMKAKGFVPDEKAVKEALIDKRG 244
           L ++ ++      +AV++ L  + G
Sbjct: 604 LSELCSR------RAVRKHLTRRFG 622



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 66/148 (44%), Gaps = 16/148 (10%)

Query: 103 THEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAV 162
            HEAL   AQ    G  PD+  +  +I+     G  + A  +  RM + G+ PN   Y  
Sbjct: 250 VHEALSQMAQ---HGCTPDIRMYATIIDGICKEGHHEVANEILSRMPSYGLKPNVVCYNT 306

Query: 163 LIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
           ++KG+  +AD   K    A++ L EM  K    +  T+  + + F +   VD    LL+Q
Sbjct: 307 VLKGI-CSADRWEK----AEELLTEMYQKNCPLDDVTFNILVDFFCQNGLVDRVIELLEQ 361

Query: 223 MKAKGFVPD--------EKAVKEALIDK 242
           M   G +PD            KE LID+
Sbjct: 362 MLEHGCMPDVITYTTVINGFCKEGLIDE 389



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 73/162 (45%), Gaps = 10/162 (6%)

Query: 74  LQEIFHKMRTEGLTNNAVKMF----DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           + E   +M   G T + ++M+    D + K+G    A ++ +++   G  P+VV +  V+
Sbjct: 250 VHEALSQMAQHGCTPD-IRMYATIIDGICKEGHHEVANEILSRMPSYGLKPNVVCYNTVL 308

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
           +   SA + ++A  +   M       +  T+ +L+            ++    + L +M+
Sbjct: 309 KGICSADRWEKAEELLTEMYQKNCPLDDVTFNILVDFFCQNG-----LVDRVIELLEQML 363

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             G  P+  TYT V   F +   +DEA  LL+ M + G  P+
Sbjct: 364 EHGCMPDVITYTTVINGFCKEGLIDEAVMLLKNMPSCGCKPN 405



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 72/165 (43%), Gaps = 16/165 (9%)

Query: 87  TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASA---GQGKEAL- 142
           T N   + +A+   G   E L++  ++   G   D+V++ AV++   +A   G  +E + 
Sbjct: 186 TGNCNLVINAICDQGCVDEGLEMLRKLPLFGCEADIVSYNAVLKGLCAAKRWGDVEELMD 245

Query: 143 ------RVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196
                     +M   G  P+   YA +I G+    +G+ ++   A + L  M   G++PN
Sbjct: 246 EMVKVHEALSQMAQHGCTPDIRMYATIIDGI--CKEGHHEV---ANEILSRMPSYGLKPN 300

Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
              Y  V +    A + ++A  LL +M  K   P +      L+D
Sbjct: 301 VVCYNTVLKGICSADRWEKAEELLTEMYQKN-CPLDDVTFNILVD 344



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 64/158 (40%), Gaps = 27/158 (17%)

Query: 74  LQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           L  +   +   G T +AV+  DA                    G+   VV + A++  Y 
Sbjct: 55  LSALIRSLCVAGRTADAVRALDA-------------------AGNAAGVVDYNAMVAGYC 95

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             GQ + A R+     A  V PNAYTY  +++GL     G  +I  DA   L EM  +  
Sbjct: 96  RVGQVEAARRLAA---AVPVPPNAYTYFPVVRGLC----GRGRI-ADALAVLDEMTSRSC 147

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            P    Y  + E+  R+     A  +L+ + AKG   D
Sbjct: 148 VPIPPMYHVIIESACRSGGYSSALRVLEALHAKGSTLD 185


>gi|224127136|ref|XP_002329409.1| predicted protein [Populus trichocarpa]
 gi|222870459|gb|EEF07590.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 79/154 (51%), Gaps = 8/154 (5%)

Query: 77  IFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F KM  +G   N      + D+ +K G   EA+ LF ++K +G  PDVV +  V+    
Sbjct: 294 VFEKMIQKGCKVNVAIYTALIDSNAKCGNMGEAMLLFERMKKEGLEPDVVTYGVVVNCMC 353

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            +G+  EA+        +GVA NA  Y+ LI GL     G A  + +A+K   EMV KG 
Sbjct: 354 KSGRLDEAMEYLEFCRVNGVAVNAMLYSSLIDGL-----GKAGRVHEAEKLFEEMVKKGC 408

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
            P++  Y A+ +A  +  K DEA    ++M+ +G
Sbjct: 409 PPDSYCYNALIDALAKCGKTDEALAFFKRMEDEG 442



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 73/159 (45%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E     R  G+  NA+    + D L K G  HEA +LF ++  KG  PD   + A+I+A 
Sbjct: 363 EYLEFCRVNGVAVNAMLYSSLIDGLGKAGRVHEAEKLFEEMVKKGCPPDSYCYNALIDAL 422

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           A  G+  EAL  F RM   G     YTY ++I GL            +A K    M+ KG
Sbjct: 423 AKCGKTDEALAFFKRMEDEGCDQTVYTYTIMINGLFREHKNE-----EALKMWDMMIDKG 477

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + P A  + A+      + KV  A  LL ++   G +P+
Sbjct: 478 ITPTAAAFRALSIGLCLSGKVARACKLLDELAPMGVIPE 516



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 82/168 (48%), Gaps = 9/168 (5%)

Query: 77  IFHKMRTEGLT---NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           ++H+M   GL    +    +   L K+G   E   +F ++  KG   +V  +TA+I++ A
Sbjct: 259 LYHEMDENGLEIPPHAYSLVIGGLCKEGKCVEGYAVFEKMIQKGCKVNVAIYTALIDSNA 318

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G   EA+ +F RM   G+ P+  TY V++  +  +       L +A +YL      G+
Sbjct: 319 KCGNMGEAMLLFERMKKEGLEPDVVTYGVVVNCMCKSGR-----LDEAMEYLEFCRVNGV 373

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
             NA  Y+++ +   +A +V EA  L ++M  KG  PD      ALID
Sbjct: 374 AVNAMLYSSLIDGLGKAGRVHEAEKLFEEMVKKGCPPDSYCYN-ALID 420



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 72/163 (44%), Gaps = 8/163 (4%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M+ EGL  + V    + + + K G   EA++     +  G   + + ++++I+   
Sbjct: 329 LFERMKKEGLEPDVVTYGVVVNCMCKSGRLDEAMEYLEFCRVNGVAVNAMLYSSLIDGLG 388

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG+  EA ++F  M+  G  P++Y Y  LI  LA     +     +A  +   M  +G 
Sbjct: 389 KAGRVHEAEKLFEEMVKKGCPPDSYCYNALIDALAKCGKTD-----EALAFFKRMEDEGC 443

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK 236
                TYT +     R  K +EA  +   M  KG  P   A +
Sbjct: 444 DQTVYTYTIMINGLFREHKNEEALKMWDMMIDKGITPTAAAFR 486



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 68/142 (47%), Gaps = 5/142 (3%)

Query: 91  VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           V   D L+ +G       +F + +  G + +V A  ++I+++ S G  +E L V+  M  
Sbjct: 101 VSSIDVLAINGDLDNVKSVFCKFRGMGFLMNVSAANSLIKSFGSLGMVEELLWVWRGMKE 160

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
           +GV P+ +TY  L+ GL      N+  +  A++ L  M    + P+  TY  + + + + 
Sbjct: 161 NGVEPSLFTYNFLLNGLV-----NSVFIESAERVLEVMENGKIGPDVVTYNTMIKGYCQV 215

Query: 211 QKVDEARGLLQQMKAKGFVPDE 232
            K  +A    + M+ +   PD+
Sbjct: 216 GKTQKAFEKFRDMELRNVAPDK 237



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 67/158 (42%), Gaps = 31/158 (19%)

Query: 105 EALQLFAQIKDKGHM-PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
           E+ +   ++ + G + PDVV +  +I+ Y   G+ ++A   F  M    VAP+  TY  L
Sbjct: 184 ESAERVLEVMENGKIGPDVVTYNTMIKGYCQVGKTQKAFEKFRDMELRNVAPDKITYMTL 243

Query: 164 IKGLAAAADGN---------------------AKILGDAQK---------YLMEMVGKGM 193
           I+   A  D +                     + ++G   K            +M+ KG 
Sbjct: 244 IQACYAEGDFDLCLSLYHEMDENGLEIPPHAYSLVIGGLCKEGKCVEGYAVFEKMIQKGC 303

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + N   YTA+ ++  +   + EA  L ++MK +G  PD
Sbjct: 304 KVNVAIYTALIDSNAKCGNMGEAMLLFERMKKEGLEPD 341


>gi|357465315|ref|XP_003602939.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491987|gb|AES73190.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 586

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 69/133 (51%), Gaps = 6/133 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHM-PDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
           + D L ++G   EA +LF ++  K  + PD + +  +I  +   G+   A  V   M  +
Sbjct: 315 LMDGLCRNGRLKEAFELFEEMVSKDQIVPDPLTYNVLINGFCREGKADRARNVIEFMKNN 374

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           G  PN + Y+ L+ GL  A       L DA+  L EM   G++P+A TYT++   F R  
Sbjct: 375 GCCPNVFNYSALVDGLCKAGK-----LQDAKGVLAEMKSSGLKPDAITYTSLINFFSRNG 429

Query: 212 KVDEARGLLQQMK 224
           ++DEA  LL +MK
Sbjct: 430 QIDEAIELLTEMK 442



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 80/178 (44%), Gaps = 11/178 (6%)

Query: 72  RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           RN+ E    M+  G   N      + D L K G   +A  + A++K  G  PD + +T++
Sbjct: 365 RNVIEF---MKNNGCCPNVFNYSALVDGLCKAGKLQDAKGVLAEMKSSGLKPDAITYTSL 421

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I  ++  GQ  EA+ +   M  +    +  T+ V++ GL            +A   + ++
Sbjct: 422 INFFSRNGQIDEAIELLTEMKENDCQADTVTFNVILGGLCREGR-----FDEALDMIEKL 476

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
             +G+  N G+Y  V  +  +  ++ +A  LL  M ++GFVP      E L+    +G
Sbjct: 477 PQQGVYLNKGSYRIVLNSLTQNCELRKANKLLGLMLSRGFVPHYATSNELLVRLCKEG 534



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 77/148 (52%), Gaps = 13/148 (8%)

Query: 91  VKMFDAL----SKDGLTHEALQLFAQIKD-KGHMPDVVAHTAVIEAYASAGQGKEALRVF 145
           V +F+ L     + G    A ++  ++++ K   P+V+ ++ +++     G+ KEA  +F
Sbjct: 273 VCIFNILVKYHCRRGDIDSAFEVVKEMRNSKYSYPNVITYSTLMDGLCRNGRLKEAFELF 332

Query: 146 MRMLASG-VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME-MVGKGMRPNAGTYTAV 203
             M++   + P+  TY VLI G     +G A    D  + ++E M   G  PN   Y+A+
Sbjct: 333 EEMVSKDQIVPDPLTYNVLINGFCR--EGKA----DRARNVIEFMKNNGCCPNVFNYSAL 386

Query: 204 FEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +   +A K+ +A+G+L +MK+ G  PD
Sbjct: 387 VDGLCKAGKLQDAKGVLAEMKSSGLKPD 414



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 76/158 (48%), Gaps = 13/158 (8%)

Query: 76  EIFHKMRTEG------LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           E+F +M ++       LT N   + +   ++G    A  +   +K+ G  P+V  ++A++
Sbjct: 330 ELFEEMVSKDQIVPDPLTYNV--LINGFCREGKADRARNVIEFMKNNGCCPNVFNYSALV 387

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
           +    AG+ ++A  V   M +SG+ P+A TY  LI   +     N +I  +A + L EM 
Sbjct: 388 DGLCKAGKLQDAKGVLAEMKSSGLKPDAITYTSLINFFSR----NGQI-DEAIELLTEMK 442

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
               + +  T+  +     R  + DEA  +++++  +G
Sbjct: 443 ENDCQADTVTFNVILGGLCREGRFDEALDMIEKLPQQG 480


>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
          Length = 817

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/174 (32%), Positives = 83/174 (47%), Gaps = 13/174 (7%)

Query: 77  IFHKMRTEGLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +MR   +  + V +     +L K G   EA  +F  +  KG  PDV ++  ++  YA
Sbjct: 314 VFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYA 373

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
           + G   +   +F  ML  G+AP+ YT+ VLIK  A     N  +L  A     EM   G+
Sbjct: 374 TKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYA-----NCGMLDKAMIIFNEMRDHGV 428

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGF 247
           +P+  TY  V  A  R  K+D+A     QM  +G  PD+ A    LI    QGF
Sbjct: 429 KPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYN-CLI----QGF 477



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 82/172 (47%), Gaps = 9/172 (5%)

Query: 73  NLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           ++ ++F  M  +G+  +      +  A +  G+  +A+ +F +++D G  PDVV +  VI
Sbjct: 380 DMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVI 439

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
            A    G+  +A+  F +M+  GVAP+ Y Y  LI+G           L  A++ + E++
Sbjct: 440 AALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGS-----LLKAKELISEIM 494

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
             GM  +   ++++     +  +V +A+ +       G  PD   V   L+D
Sbjct: 495 NNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPD-AVVYNMLMD 545



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 65/134 (48%), Gaps = 5/134 (3%)

Query: 98  SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA 157
           S  G   EA+++F +++    +PDVV  + ++ +    G+ KEA  VF  M   G  P+ 
Sbjct: 303 SSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDV 362

Query: 158 YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
           ++Y +++ G A         L D       M+G G+ P+  T+  + +A+     +D+A 
Sbjct: 363 FSYNIMLNGYATKG-----CLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAM 417

Query: 218 GLLQQMKAKGFVPD 231
            +  +M+  G  PD
Sbjct: 418 IIFNEMRDHGVKPD 431



 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 72/160 (45%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+  ++   G+  + V    + + L K G   +A  +F    + G  PD V +  +++ 
Sbjct: 487 KELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDG 546

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y   G+ ++ALRVF  M+++G+ PN   Y  L+ G           + +      EM+ +
Sbjct: 547 YCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGR-----IDEGLSLFREMLQR 601

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G++P+   Y+ + +    A +   A+    +M   G   D
Sbjct: 602 GIKPSTILYSIIIDGLFEAGRTVPAKMKFHEMTESGIAMD 641



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   K+G  ++A  LF ++  +G  PD+V + +V+ A   A    +A     +M+   
Sbjct: 228 VIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKR 287

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V PN +TY  LI G ++   G  K   +A +   EM    + P+  T + +  +  +  K
Sbjct: 288 VLPNNWTYNNLIYGYSST--GQWK---EAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGK 342

Query: 213 VDEARGLLQQMKAKGFVPD 231
           + EAR +   M  KG  PD
Sbjct: 343 IKEARDVFDTMAMKGQNPD 361



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 67/141 (47%), Gaps = 7/141 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHM--PDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           +  +L   G + +A  L   + + G +  P+VVA+  VI+ +   G   +A  +F  M+ 
Sbjct: 191 LLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQ 250

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
            G+ P+  TY  ++  L       A+ +  A+ +L +MV K + PN  TY  +   +   
Sbjct: 251 RGIPPDLVTYNSVVHALC-----KARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSST 305

Query: 211 QKVDEARGLLQQMKAKGFVPD 231
            +  EA  + ++M+    +PD
Sbjct: 306 GQWKEAVRVFKEMRRHSILPD 326



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 75/162 (46%), Gaps = 16/162 (9%)

Query: 76  EIFHKMRTEGLTNNAVKMFDALSKDGLTHEAL----QLFAQIKDKGHMPDVVAHTAVIEA 131
           E F++M  +G+  +    ++ L +   TH +L    +L ++I + G   D+V  +++I  
Sbjct: 453 EKFNQMIDQGVAPDKYA-YNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINN 511

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM---EM 188
               G+  +A  +F   +  G+ P+A  Y +L+ G          ++G  +K L     M
Sbjct: 512 LCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYC--------LVGKMEKALRVFDAM 563

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           V  G+ PN   Y  +   + +  ++DE   L ++M  +G  P
Sbjct: 564 VSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQRGIKP 605



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 79/187 (42%), Gaps = 16/187 (8%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F  M + G+  N V    + +   K G   E L LF ++  +G  P  + ++ +I+   
Sbjct: 559 VFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLF 618

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG+   A   F  M  SG+A +  TY ++++GL        +   +A     E+    +
Sbjct: 619 EAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLF-----KNRCFDEAIFLFKELRAMNV 673

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD--------EKAVKEALIDKRGQ 245
           + N  T   + +   + ++V+EA+ L   +     VP            +KE L+++   
Sbjct: 674 KINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAED 733

Query: 246 GFRGVIN 252
            F  + N
Sbjct: 734 MFSSMQN 740



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 73/172 (42%), Gaps = 33/172 (19%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFM-RMLAS 151
           + D  ++      AL  F Q+   G   +++    ++E +  A +  EAL + + R    
Sbjct: 120 LMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALDILLHRTPEL 179

Query: 152 GVAPNAYTYAVLIKGLA-----AAADGNAKIL------------------------GDAQ 182
           G  P+ ++Y++L+K L        AD   +++                        GD  
Sbjct: 180 GCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVN 239

Query: 183 K---YLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           K      EMV +G+ P+  TY +V  A  +A+ +D+A   L+QM  K  +P+
Sbjct: 240 KACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPN 291


>gi|224713520|gb|ACN62067.1| PPR-816 [Zea mays]
          Length = 816

 Score = 82.8 bits (203), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 84/174 (48%), Gaps = 13/174 (7%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +MR + +  + V    +  +L K G   EA  +F  +  KG  PDV ++T ++  YA
Sbjct: 313 VFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYA 372

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
           + G   +   +F  ML  G+AP   T+ VLIK  A     N  +L  A     EM   G+
Sbjct: 373 TKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYA-----NCGMLDKAMIIFNEMRDHGV 427

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGF 247
           +P+  TY  V  A  R  K+D+A     QM  +G VPD+ A    LI    QGF
Sbjct: 428 KPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAY-HCLI----QGF 476



 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 77/163 (47%), Gaps = 10/163 (6%)

Query: 73  NLQEIFHKMRTEGLTNNAVKMFDALSK----DGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           ++ ++F  M  +G+    +  F+ L K     G+  +A+ +F +++D G  P VV +  V
Sbjct: 379 DMTDLFDLMLGDGIAP-VICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTV 437

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I A    G+  +A+  F +M+  GV P+ Y Y  LI+G           L  A++ + E+
Sbjct: 438 IAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGS-----LLKAKELISEI 492

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +  GMR +   + ++     +  +V +A+ +       G  PD
Sbjct: 493 MNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPD 535



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 72/145 (49%), Gaps = 7/145 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHM--PDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           +  +L   G + +A  L   + + G +  PDVVA+  VI+ +   G   +A  +F  M+ 
Sbjct: 190 LLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQ 249

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
            G+ P+  TY+ ++  L       A+ +  A+ +L +MV KG+ P+  TY  +   +   
Sbjct: 250 RGIPPDLVTYSSVVHALC-----KARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSST 304

Query: 211 QKVDEARGLLQQMKAKGFVPDEKAV 235
            +  EA  + ++M+ +  +PD  A+
Sbjct: 305 GQWKEAVRVFKEMRRQSILPDVVAL 329



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 70/157 (44%), Gaps = 8/157 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+  ++   G+  + V    + + L K G   +A  +F    + G  PD V +  +++ 
Sbjct: 486 KELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDG 545

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y   G+ ++ALRVF  M+++G+ PN   Y  L+ G           + +      EM+ K
Sbjct: 546 YCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGR-----IDEGLSLFREMLQK 600

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
           G++P+   Y  + +    A +   A+    +M   G 
Sbjct: 601 GIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGI 637



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 33/172 (19%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFM-RMLAS 151
           + D  ++      AL  F Q+   G   D +  + +++ +  A +  EAL + + R    
Sbjct: 119 LMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEALDILLHRTPEL 178

Query: 152 GVAPNAYTYAVLIKGLA-----AAADGNAKIL------------------------GDAQ 182
           G  P+ ++Y +L+K L        AD   +++                        GD  
Sbjct: 179 GCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVN 238

Query: 183 K---YLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           K      EMV +G+ P+  TY++V  A  +A+ +D+A   L+QM  KG +PD
Sbjct: 239 KACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPD 290



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   K+G  ++A  LF ++  +G  PD+V +++V+ A   A    +A     +M+  G
Sbjct: 227 VIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKG 286

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V P+ +TY  LI G ++   G  K   +A +   EM  + + P+      +  +  +  K
Sbjct: 287 VLPDNWTYNNLIYGYSST--GQWK---EAVRVFKEMRRQSILPDVVALNTLMGSLCKYGK 341

Query: 213 VDEARGLLQQMKAKGFVPD 231
           + EAR +   M  KG  PD
Sbjct: 342 IKEARDVFDTMAMKGQNPD 360



 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 79/187 (42%), Gaps = 16/187 (8%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F  M + G+  N V    + +   K G   E L LF ++  KG  P  + +  +I+   
Sbjct: 558 VFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLF 617

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG+   A   F  M  SG+A N  TY+++++GL        +   +A     E+    +
Sbjct: 618 EAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLF-----KNRCFDEAIFLFKELRAMNV 672

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD--------EKAVKEALIDKRGQ 245
           + +  T   +     + ++V+EA+ L   +   G VP            +KE L+++   
Sbjct: 673 KIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCAVTYSIMITNLIKEGLVEEAED 732

Query: 246 GFRGVIN 252
            F  + N
Sbjct: 733 MFSSMQN 739



 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 73/162 (45%), Gaps = 16/162 (9%)

Query: 76  EIFHKMRTEGLTNNAVKMFDALSKDGLTHEAL----QLFAQIKDKGHMPDVVAHTAVIEA 131
           E F++M  +G+  +    +  L +   TH +L    +L ++I + G   D+V   ++I  
Sbjct: 452 EKFNQMIDQGVVPDKYA-YHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINN 510

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM---EM 188
               G+  +A  +F   +  G+ P+A  Y +L+ G          ++G  +K L     M
Sbjct: 511 LCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYC--------LVGKMEKALRVFDAM 562

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           V  G+ PN   Y  +   + +  ++DE   L ++M  KG  P
Sbjct: 563 VSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKP 604


>gi|297745184|emb|CBI39176.3| unnamed protein product [Vitis vinifera]
          Length = 996

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/163 (30%), Positives = 82/163 (50%), Gaps = 8/163 (4%)

Query: 72  RNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           +  +++   M  EG   N +    + D   K G   EA  +F ++ ++G+ P+V  ++++
Sbjct: 653 KEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSL 712

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I+      +   AL+V  RML +  APN   Y  +I GL      +     +A + +  M
Sbjct: 713 IDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTD-----EAYRLMSMM 767

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             KG  PN  TYTA+ + F +A KVD+   L++QM AKG  P+
Sbjct: 768 EEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPN 810



 Score = 80.5 bits (197), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 59/180 (32%), Positives = 84/180 (46%), Gaps = 17/180 (9%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M++  +  +      + D+  K GL  +A + F ++   G  P+VV +TA+I AY 
Sbjct: 502 LFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYL 561

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKG------------LAAAADGNAKILGDA 181
            A +   A  +F  ML+ G  PN  TY  LI G            + A   GNA I  D 
Sbjct: 562 KARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADI-PDV 620

Query: 182 QKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
             Y     G    PN  TY A+ +   +A KV EAR LL  M  +G  P+   V +ALID
Sbjct: 621 DMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNH-IVYDALID 679



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/160 (30%), Positives = 78/160 (48%), Gaps = 9/160 (5%)

Query: 89  NAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRM 148
           N   +   L   G   +A  +  ++  KG +PD   ++ VI    +A +   A  +F  M
Sbjct: 447 NVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEM 506

Query: 149 LASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFV 208
            ++ V P+ +TY +LI            +L  A+K+  EMV  G  PN  TYTA+  A++
Sbjct: 507 KSNHVVPDVFTYTILIDSFCKVG-----LLQQARKWFDEMVRDGCAPNVVTYTALIHAYL 561

Query: 209 RAQKVDEARGLLQQMKAKGFVPDEKAVKEALID---KRGQ 245
           +A+K+  A  L + M ++G +P+      ALID   K GQ
Sbjct: 562 KARKMSSANELFEMMLSEGCIPN-VVTYTALIDGHCKSGQ 600



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/139 (35%), Positives = 71/139 (51%), Gaps = 7/139 (5%)

Query: 92  KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
           +M D L K G T EA +L + +++KG  P+VV +TA+I+ +  AG+  + L +  +M A 
Sbjct: 746 EMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAK 805

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           G APN  TY VLI    AA      +L DA + L EM       +   Y  V E F R  
Sbjct: 806 GCAPNFVTYRVLINHCCAAG-----LLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREF 860

Query: 212 KVDEARGLLQQMKAKGFVP 230
            +  + GLL ++     VP
Sbjct: 861 II--SLGLLDEIAENVAVP 877



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 41/158 (25%), Positives = 75/158 (47%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           I  +M ++G    T+   K+   L        A  LF ++K    +PDV  +T +I+++ 
Sbjct: 467 IIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFC 526

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G  ++A + F  M+  G APN  TY  LI          A+ +  A +    M+ +G 
Sbjct: 527 KVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYL-----KARKMSSANELFEMMLSEGC 581

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            PN  TYTA+ +   ++ ++++A  +  +M+    +PD
Sbjct: 582 IPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPD 619



 Score = 60.1 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 43/175 (24%), Positives = 73/175 (41%), Gaps = 24/175 (13%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDV---------- 122
           E+F  M +EG   N V    + D   K G   +A Q++A+++    +PDV          
Sbjct: 571 ELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGN 630

Query: 123 ------VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK 176
                   + A+++    A + KEA  +   M   G  PN   Y  LI G          
Sbjct: 631 IRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGK---- 686

Query: 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            L +AQ    +M  +G  PN  TY+++ +   + +++D A  +L +M      P+
Sbjct: 687 -LDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPN 740



 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 8/134 (5%)

Query: 97  LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
           L K G   EAL L   I+ +    D V +T +I     A   +EA+    RM +S   PN
Sbjct: 277 LCKAGRWREALAL---IEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPN 333

Query: 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
             TY +L+ G         + LG  ++ L  M+ +G  P+   + ++  A+ R+     A
Sbjct: 334 VVTYRILLCGCL-----RKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYA 388

Query: 217 RGLLQQMKAKGFVP 230
             LL++M   G  P
Sbjct: 389 YKLLKKMGDCGCQP 402



 Score = 47.0 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 41/160 (25%), Positives = 62/160 (38%), Gaps = 36/160 (22%)

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKG- 166
           ++ + +  +G  P      ++I AY  +G    A ++  +M   G  P    Y +LI G 
Sbjct: 355 RILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGI 414

Query: 167 -------------LAAAADGN----------------AKILGDAQKY------LMEMVGK 191
                        LA  A G                 A+ L  A K+      + EM+ K
Sbjct: 415 CGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSK 474

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G  P+  TY+ V      A KVD A  L ++MK+   VPD
Sbjct: 475 GFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPD 514



 Score = 41.2 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 58/134 (43%), Gaps = 10/134 (7%)

Query: 99  KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAY 158
           ++GL + AL+   ++KD G+ P  + + A++  +  A +   A  V   M  SG   + Y
Sbjct: 209 RNGLWNVALEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGY 268

Query: 159 TYAVLIKGLAAAAD-GNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
           T    +  L  A     A  L + +++ ++ V          YT +      A   +EA 
Sbjct: 269 TLGCFVHLLCKAGRWREALALIEKEEFKLDTV---------IYTQMISGLCEASLFEEAM 319

Query: 218 GLLQQMKAKGFVPD 231
             L +M++   +P+
Sbjct: 320 DFLSRMRSSSCIPN 333


>gi|225433790|ref|XP_002269080.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Vitis vinifera]
          Length = 1045

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/163 (30%), Positives = 82/163 (50%), Gaps = 8/163 (4%)

Query: 72  RNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           +  +++   M  EG   N +    + D   K G   EA  +F ++ ++G+ P+V  ++++
Sbjct: 653 KEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSL 712

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I+      +   AL+V  RML +  APN   Y  +I GL      +     +A + +  M
Sbjct: 713 IDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTD-----EAYRLMSMM 767

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             KG  PN  TYTA+ + F +A KVD+   L++QM AKG  P+
Sbjct: 768 EEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPN 810



 Score = 80.5 bits (197), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 59/180 (32%), Positives = 84/180 (46%), Gaps = 17/180 (9%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M++  +  +      + D+  K GL  +A + F ++   G  P+VV +TA+I AY 
Sbjct: 502 LFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYL 561

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKG------------LAAAADGNAKILGDA 181
            A +   A  +F  ML+ G  PN  TY  LI G            + A   GNA I  D 
Sbjct: 562 KARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADI-PDV 620

Query: 182 QKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
             Y     G    PN  TY A+ +   +A KV EAR LL  M  +G  P+   V +ALID
Sbjct: 621 DMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNH-IVYDALID 679



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/160 (30%), Positives = 78/160 (48%), Gaps = 9/160 (5%)

Query: 89  NAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRM 148
           N   +   L   G   +A  +  ++  KG +PD   ++ VI    +A +   A  +F  M
Sbjct: 447 NVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEM 506

Query: 149 LASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFV 208
            ++ V P+ +TY +LI            +L  A+K+  EMV  G  PN  TYTA+  A++
Sbjct: 507 KSNHVVPDVFTYTILIDSFCKVG-----LLQQARKWFDEMVRDGCAPNVVTYTALIHAYL 561

Query: 209 RAQKVDEARGLLQQMKAKGFVPDEKAVKEALID---KRGQ 245
           +A+K+  A  L + M ++G +P+      ALID   K GQ
Sbjct: 562 KARKMSSANELFEMMLSEGCIPN-VVTYTALIDGHCKSGQ 600



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/139 (35%), Positives = 71/139 (51%), Gaps = 7/139 (5%)

Query: 92  KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
           +M D L K G T EA +L + +++KG  P+VV +TA+I+ +  AG+  + L +  +M A 
Sbjct: 746 EMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAK 805

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           G APN  TY VLI    AA      +L DA + L EM       +   Y  V E F R  
Sbjct: 806 GCAPNFVTYRVLINHCCAAG-----LLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREF 860

Query: 212 KVDEARGLLQQMKAKGFVP 230
            +  + GLL ++     VP
Sbjct: 861 II--SLGLLDEIAENVAVP 877



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 41/158 (25%), Positives = 75/158 (47%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           I  +M ++G    T+   K+   L        A  LF ++K    +PDV  +T +I+++ 
Sbjct: 467 IIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFC 526

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G  ++A + F  M+  G APN  TY  LI          A+ +  A +    M+ +G 
Sbjct: 527 KVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYL-----KARKMSSANELFEMMLSEGC 581

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            PN  TYTA+ +   ++ ++++A  +  +M+    +PD
Sbjct: 582 IPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPD 619



 Score = 60.1 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 43/175 (24%), Positives = 73/175 (41%), Gaps = 24/175 (13%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDV---------- 122
           E+F  M +EG   N V    + D   K G   +A Q++A+++    +PDV          
Sbjct: 571 ELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGN 630

Query: 123 ------VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK 176
                   + A+++    A + KEA  +   M   G  PN   Y  LI G          
Sbjct: 631 IRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGK---- 686

Query: 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            L +AQ    +M  +G  PN  TY+++ +   + +++D A  +L +M      P+
Sbjct: 687 -LDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPN 740



 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 8/134 (5%)

Query: 97  LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
           L K G   EAL L   I+ +    D V +T +I     A   +EA+    RM +S   PN
Sbjct: 277 LCKAGRWREALAL---IEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPN 333

Query: 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
             TY +L+ G         + LG  ++ L  M+ +G  P+   + ++  A+ R+     A
Sbjct: 334 VVTYRILLCGCL-----RKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYA 388

Query: 217 RGLLQQMKAKGFVP 230
             LL++M   G  P
Sbjct: 389 YKLLKKMGDCGCQP 402



 Score = 47.0 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 41/160 (25%), Positives = 62/160 (38%), Gaps = 36/160 (22%)

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKG- 166
           ++ + +  +G  P      ++I AY  +G    A ++  +M   G  P    Y +LI G 
Sbjct: 355 RILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGI 414

Query: 167 -------------LAAAADGN----------------AKILGDAQKY------LMEMVGK 191
                        LA  A G                 A+ L  A K+      + EM+ K
Sbjct: 415 CGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSK 474

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G  P+  TY+ V      A KVD A  L ++MK+   VPD
Sbjct: 475 GFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPD 514



 Score = 41.2 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 58/134 (43%), Gaps = 10/134 (7%)

Query: 99  KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAY 158
           ++GL + AL+   ++KD G+ P  + + A++  +  A +   A  V   M  SG   + Y
Sbjct: 209 RNGLWNVALEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGY 268

Query: 159 TYAVLIKGLAAAAD-GNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
           T    +  L  A     A  L + +++ ++ V          YT +      A   +EA 
Sbjct: 269 TLGCFVHLLCKAGRWREALALIEKEEFKLDTV---------IYTQMISGLCEASLFEEAM 319

Query: 218 GLLQQMKAKGFVPD 231
             L +M++   +P+
Sbjct: 320 DFLSRMRSSSCIPN 333


>gi|147833287|emb|CAN77475.1| hypothetical protein VITISV_041111 [Vitis vinifera]
          Length = 1010

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 49/163 (30%), Positives = 82/163 (50%), Gaps = 8/163 (4%)

Query: 72  RNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           +  +++   M  EG   N +    + D   K G   EA  +F ++ ++G+ P+V  ++++
Sbjct: 653 KEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSL 712

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I+      +   AL+V  RML +  APN   Y  +I GL      +     +A + +  M
Sbjct: 713 IDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTD-----EAYRLMSMM 767

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             KG  PN  TYTA+ + F +A KVD+   L++QM AKG  P+
Sbjct: 768 EEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPN 810



 Score = 80.5 bits (197), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 59/180 (32%), Positives = 84/180 (46%), Gaps = 17/180 (9%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M++  +  +      + D+  K GL  +A + F ++   G  P+VV +TA+I AY 
Sbjct: 502 LFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYL 561

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKG------------LAAAADGNAKILGDA 181
            A +   A  +F  ML+ G  PN  TY  LI G            + A   GNA I  D 
Sbjct: 562 KARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADI-PDV 620

Query: 182 QKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
             Y     G    PN  TY A+ +   +A KV EAR LL  M  +G  P+   V +ALID
Sbjct: 621 DMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNH-IVYDALID 679



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/160 (30%), Positives = 78/160 (48%), Gaps = 9/160 (5%)

Query: 89  NAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRM 148
           N   +   L   G   +A  +  ++  KG +PD   ++ VI    +A +   A  +F  M
Sbjct: 447 NVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEM 506

Query: 149 LASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFV 208
            ++ V P+ +TY +LI            +L  A+K+  EMV  G  PN  TYTA+  A++
Sbjct: 507 KSNHVVPDVFTYTILIDSFCKVG-----LLQQARKWFDEMVRDGCAPNVVTYTALIHAYL 561

Query: 209 RAQKVDEARGLLQQMKAKGFVPDEKAVKEALID---KRGQ 245
           +A+K+  A  L + M ++G +P+      ALID   K GQ
Sbjct: 562 KARKMSSANELFEMMLSEGCIPN-VVTYTALIDGHCKSGQ 600



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/139 (35%), Positives = 71/139 (51%), Gaps = 7/139 (5%)

Query: 92  KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
           +M D L K G T EA +L + +++KG  P+VV +TA+I+ +  AG+  + L +  +M A 
Sbjct: 746 EMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAK 805

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           G APN  TY VLI    AA      +L DA + L EM       +   Y  V E F R  
Sbjct: 806 GCAPNFVTYRVLINHCCAAG-----LLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREF 860

Query: 212 KVDEARGLLQQMKAKGFVP 230
            +  + GLL ++     VP
Sbjct: 861 II--SLGLLDEIAENVAVP 877



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 41/158 (25%), Positives = 75/158 (47%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           I  +M ++G    T+   K+   L        A  LF ++K    +PDV  +T +I+++ 
Sbjct: 467 IIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFC 526

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G  ++A + F  M+  G APN  TY  LI          A+ +  A +    M+ +G 
Sbjct: 527 KVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYL-----KARKMSSANELFEMMLSEGC 581

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            PN  TYTA+ +   ++ ++++A  +  +M+    +PD
Sbjct: 582 IPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPD 619



 Score = 60.1 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 43/175 (24%), Positives = 73/175 (41%), Gaps = 24/175 (13%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDV---------- 122
           E+F  M +EG   N V    + D   K G   +A Q++A+++    +PDV          
Sbjct: 571 ELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGN 630

Query: 123 ------VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK 176
                   + A+++    A + KEA  +   M   G  PN   Y  LI G          
Sbjct: 631 IRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGK---- 686

Query: 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            L +AQ    +M  +G  PN  TY+++ +   + +++D A  +L +M      P+
Sbjct: 687 -LDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPN 740



 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 8/134 (5%)

Query: 97  LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
           L K G   EAL L   I+ +    D V +T +I     A   +EA+    RM +S   PN
Sbjct: 277 LCKAGRWREALAL---IEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPN 333

Query: 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
             TY +L+ G         + LG  ++ L  M+ +G  P+   + ++  A+ R+     A
Sbjct: 334 VVTYRILLCGCL-----RKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYA 388

Query: 217 RGLLQQMKAKGFVP 230
             LL++M   G  P
Sbjct: 389 YKLLKKMGDCGCQP 402



 Score = 47.0 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 41/160 (25%), Positives = 62/160 (38%), Gaps = 36/160 (22%)

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKG- 166
           ++ + +  +G  P      ++I AY  +G    A ++  +M   G  P    Y +LI G 
Sbjct: 355 RILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGI 414

Query: 167 -------------LAAAADGN----------------AKILGDAQKY------LMEMVGK 191
                        LA  A G                 A+ L  A K+      + EM+ K
Sbjct: 415 CGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSK 474

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G  P+  TY+ V      A KVD A  L ++MK+   VPD
Sbjct: 475 GFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPD 514



 Score = 41.2 bits (95), Expect = 0.46,   Method: Composition-based stats.
 Identities = 30/134 (22%), Positives = 58/134 (43%), Gaps = 10/134 (7%)

Query: 99  KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAY 158
           ++GL + AL+   ++KD G+ P  + + A++  +  A +   A  V   M  SG   + Y
Sbjct: 209 RNGLWNVALEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGY 268

Query: 159 TYAVLIKGLAAAAD-GNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
           T    +  L  A     A  L + +++ ++ V          YT +      A   +EA 
Sbjct: 269 TLGCFVHLLCKAGRWREALALIEKEEFKLDTV---------IYTQMISGLCEASLFEEAM 319

Query: 218 GLLQQMKAKGFVPD 231
             L +M++   +P+
Sbjct: 320 DFLSRMRSSSCIPN 333


>gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Cucumis sativus]
          Length = 581

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 87/190 (45%), Gaps = 33/190 (17%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            ++F +MR+ G + + V    M  +L   G    A ++  ++   G  P V+ +T +IEA
Sbjct: 151 NQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEVMDELLKDGCKPSVITYTILIEA 210

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA---------------AAADGNAK 176
               G+  EAL +F  +++ G+ P+ YTY  +I+G+                +A   N  
Sbjct: 211 TILEGRINEALELFDELVSRGLRPDLYTYNAIIRGICKEGMEDRALDFVRHLSARGCNPD 270

Query: 177 ILG---------------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221
           ++                D ++ + +MV  G  PN  T++ +  +F R  +V EA  +L+
Sbjct: 271 VVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVTHSILISSFCREGRVREAVNVLE 330

Query: 222 QMKAKGFVPD 231
            MK KG  PD
Sbjct: 331 VMKEKGLTPD 340



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M    SK      A Q+F +++ +G  PDVV +  +I +  S G+ + A  V   +L  G
Sbjct: 137 MISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEVMDELLKDG 196

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  TY +LI+  A   +G    + +A +   E+V +G+RP+  TY A+     +   
Sbjct: 197 CKPSVITYTILIE--ATILEGR---INEALELFDELVSRGLRPDLYTYNAIIRGICKEGM 251

Query: 213 VDEARGLLQQMKAKGFVPD 231
            D A   ++ + A+G  PD
Sbjct: 252 EDRALDFVRHLSARGCNPD 270



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 82/161 (50%), Gaps = 12/161 (7%)

Query: 76  EIFHKMRTEGL-----TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           E+F ++ + GL     T NA+     + K+G+   AL     +  +G  PDVV++  ++ 
Sbjct: 222 ELFDELVSRGLRPDLYTYNAI--IRGICKEGMEDRALDFVRHLSARGCNPDVVSYNILLR 279

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
           ++ +  + ++  R+   M+ SG  PN  T+++LI       +G  +   +A   L  M  
Sbjct: 280 SFLNKSRWEDGERLMKDMVLSGCEPNVVTHSILISSF--CREGRVR---EAVNVLEVMKE 334

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           KG+ P++ +Y  +  AF +  ++D A   L++M + G +PD
Sbjct: 335 KGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSDGCLPD 375



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 74/162 (45%), Gaps = 8/162 (4%)

Query: 72  RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R    +   M+ +GLT ++     +  A  K+G    A++   ++   G +PD+V +  +
Sbjct: 323 REAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNYNTI 382

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           +      G    AL VF ++   G  P    Y  +   L +   GN KI   A + + EM
Sbjct: 383 LATLCKFGCADLALDVFEKLDEVGCPPTVRAYNTMFSALWSC--GN-KI--KALEMISEM 437

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           + KG+ P+  TY ++     R   VDEA GLL  M+A  F P
Sbjct: 438 IRKGIDPDEITYNSLISCLCRDGLVDEAIGLLVDMEATRFQP 479



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 61/112 (54%), Gaps = 5/112 (4%)

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
           PDV ++ A+I  ++ A Q   A +VF RM + G +P+  TY ++I  L +        L 
Sbjct: 129 PDVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGK-----LE 183

Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            A + + E++  G +P+  TYT + EA +   +++EA  L  ++ ++G  PD
Sbjct: 184 LAFEVMDELLKDGCKPSVITYTILIEATILEGRINEALELFDELVSRGLRPD 235



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 64/142 (45%), Gaps = 5/142 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           MF AL   G   +AL++ +++  KG  PD + + ++I      G   EA+ + + M A+ 
Sbjct: 417 MFSALWSCGNKIKALEMISEMIRKGIDPDEITYNSLISCLCRDGLVDEAIGLLVDMEATR 476

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P   ++ +++ G+  A       + +  + L+ MV KG  PN  +Y  + E    A  
Sbjct: 477 FQPTVISFNIVLLGMCKAHR-----VFEGIELLITMVEKGCLPNETSYVLLIEGIAYAGW 531

Query: 213 VDEARGLLQQMKAKGFVPDEKA 234
             EA  L   +   G +  + +
Sbjct: 532 RAEAMELANSLYRLGVISGDSS 553



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 3/99 (3%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+  +M  +G+  + +    +   L +DGL  EA+ L   ++     P V++   V+   
Sbjct: 432 EMISEMIRKGIDPDEITYNSLISCLCRDGLVDEAIGLLVDMEATRFQPTVISFNIVLLGM 491

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA 171
             A +  E + + + M+  G  PN  +Y +LI+G+A A 
Sbjct: 492 CKAHRVFEGIELLITMVEKGCLPNETSYVLLIEGIAYAG 530



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 10/118 (8%)

Query: 118 HMPDVVAHTA----VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADG 173
           H P++    A    ++     AG+  E+L     +++ G  P+      LIKG       
Sbjct: 54  HFPNLDNRDAHLMKLLNRSCRAGKHNESLYFLESVVSKGFKPDVVLCTKLIKGFF----- 108

Query: 174 NAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           N++ L  A + +ME++     P+  +Y A+   F +A ++D A  +  +M+++GF PD
Sbjct: 109 NSRNLKKAMR-VMEILETYGDPDVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPD 165


>gi|15237575|ref|NP_198933.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75309191|sp|Q9FLL3.1|PP412_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g41170, mitochondrial; Flags: Precursor
 gi|9759163|dbj|BAB09719.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|66792708|gb|AAY56456.1| At5g41170 [Arabidopsis thaliana]
 gi|332007267|gb|AED94650.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 527

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 85/183 (46%), Gaps = 10/183 (5%)

Query: 49  TKSKLPPPYDPFKKVVDEEPTDPRNL--QEIFHKMRTEGLTNNA---VKMFDALSKDGLT 103
           TK K+ P    F  ++D    + + L  +E++++M    +  N      + +    +G  
Sbjct: 239 TKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCV 298

Query: 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
            EA Q+F  ++ KG  PDVVA+T++I  +    +  +A+++F  M   G+  N  TY  L
Sbjct: 299 DEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTL 358

Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           I+G       N      AQ+    MV +G+ PN  TY  +        KV +A  + + M
Sbjct: 359 IQGFGQVGKPNV-----AQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDM 413

Query: 224 KAK 226
           + +
Sbjct: 414 QKR 416



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 72/139 (51%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D+L K+G  + AL LF Q+++ G  PDVV +T+++    ++G+ ++A  +   M    
Sbjct: 183 IIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRK 242

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+  T+  LI           K L DA++   EM+   + PN  TYT++   F     
Sbjct: 243 IKPDVITFNALIDAFVK----EGKFL-DAEELYNEMIRMSIAPNIFTYTSLINGFCMEGC 297

Query: 213 VDEARGLLQQMKAKGFVPD 231
           VDEAR +   M+ KG  PD
Sbjct: 298 VDEARQMFYLMETKGCFPD 316



 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 73/152 (48%), Gaps = 7/152 (4%)

Query: 80  KMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGK 139
           K++ + +T NA  + DA  K+G   +A +L+ ++      P++  +T++I  +   G   
Sbjct: 242 KIKPDVITFNA--LIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVD 299

Query: 140 EALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGT 199
           EA ++F  M   G  P+   Y  LI G         K + DA K   EM  KG+  N  T
Sbjct: 300 EARQMFYLMETKGCFPDVVAYTSLINGFCKC-----KKVDDAMKIFYEMSQKGLTGNTIT 354

Query: 200 YTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           YT + + F +  K + A+ +   M ++G  P+
Sbjct: 355 YTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPN 386



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 77/188 (40%), Gaps = 36/188 (19%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +IF++M  +GLT N +    +     + G  + A ++F+ +  +G  P++  +  ++   
Sbjct: 338 KIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCL 397

Query: 133 ASAGQGKEALRVFMRML---ASGVAPNAYTYAVLIKGLA--------------------- 168
              G+ K+AL +F  M      GVAPN +TY VL+ GL                      
Sbjct: 398 CYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMD 457

Query: 169 -------AAADGNAKI--LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGL 219
                      G  K   + +A      +  KG++PN  TYT +     R     EA  L
Sbjct: 458 IGIITYTIIIQGMCKAGKVKNAVNLFCSLPSKGVKPNVVTYTTMISGLFREGLKHEAHVL 517

Query: 220 LQQMKAKG 227
            ++MK  G
Sbjct: 518 FRKMKEDG 525



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 54/236 (22%), Positives = 94/236 (39%), Gaps = 23/236 (9%)

Query: 6   ILRWLLHSPSPKRSLRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKKVVD 65
           ILR  LHS     +L +    V +   R L S  D    K +N  +K+      F  V++
Sbjct: 43  ILRNGLHSLQFNEALDLFTHMVES---RPLPSIID--FTKLLNVIAKMKK----FDVVIN 93

Query: 66  EEPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAH 125
               D   +  + H + T  L      + +   +    + A     ++   G  PD+V  
Sbjct: 94  --LCDHLQIMGVSHDLYTCNL------LMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTF 145

Query: 126 TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185
           T++I  +    + +EA+ +  +M+  G+ P+   Y  +I  L      N      A    
Sbjct: 146 TSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNY-----ALSLF 200

Query: 186 MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
            +M   G+RP+   YT++      + +  +A  LL+ M  +   PD      ALID
Sbjct: 201 DQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITF-NALID 255


>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
 gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
          Length = 636

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 67/136 (49%), Gaps = 5/136 (3%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K G   EA +LF ++++    PDVV  TA+++      + +EA +V   M      P
Sbjct: 191 GLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTP 250

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           N  TY+ LI GL          + DAQ+    M+ +G+ PN  TY ++   F     VD 
Sbjct: 251 NVITYSSLIDGLCKTGQ-----VRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDS 305

Query: 216 ARGLLQQMKAKGFVPD 231
           A  L+++M A G +PD
Sbjct: 306 ALLLMEEMTATGCLPD 321



 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 74/159 (46%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F KMR      + V    + D L K     EA Q+   ++D+   P+V+ ++++I+  
Sbjct: 203 KLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGL 262

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              GQ ++A  VF RM+  G+ PN  TY  LI G       ++ +L      + EM   G
Sbjct: 263 CKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALL-----LMEEMTATG 317

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             P+  TY  + +   +  +  EA  L   MKAK   PD
Sbjct: 318 CLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPD 356



 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 6/149 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K G   EA +LF  +K K   PDV+ ++ +I  +    +   A  +F  ML   
Sbjct: 328 LIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQA 387

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V P+  T++ L++G       NA ++ DA++ L EMV     P+  TYT++ + F +  +
Sbjct: 388 VLPDVVTFSTLVEGYC-----NAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGR 442

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALID 241
           + EAR +L++M  +G  P+      ALID
Sbjct: 443 MVEARRVLKRMAKRGCQPN-VVTYTALID 470



 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 67/126 (53%), Gaps = 5/126 (3%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A  LF  +  +  +PDVV  + ++E Y +AG   +A R+   M+AS  +P+ YTY  L+ 
Sbjct: 376 ARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVD 435

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G           + +A++ L  M  +G +PN  TYTA+ +AF RA K   A  LL++M  
Sbjct: 436 GFCKVGR-----MVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVG 490

Query: 226 KGFVPD 231
            G  P+
Sbjct: 491 NGVQPN 496



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 63/140 (45%), Gaps = 5/140 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M D L K     EA   FA++K KG +P+   +  +I  +    +   A  +   M  SG
Sbjct: 13  MIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESG 72

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +APN  TY+ +I G       +      A K   +MV  G  PN  TY  +     R   
Sbjct: 73  LAPNVVTYSTVIHGFCRQTKVDT-----AYKLFRQMVENGCMPNLVTYNTLLSGLCRNGL 127

Query: 213 VDEARGLLQQMKAKGFVPDE 232
           +DEA  LL +M+ +G  PD+
Sbjct: 128 MDEAYELLDEMRERGLQPDK 147



 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 64/132 (48%), Gaps = 5/132 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +     GL  +A +L  ++      PDV  +T++++ +   G+  EA RV  RM   G
Sbjct: 398 LVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRG 457

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN  TY  LI     A          A K L EMVG G++PN  TY ++   F     
Sbjct: 458 CQPNVVTYTALIDAFCRAGKPTV-----AYKLLEEMVGNGVQPNVITYRSLIGGFCGTGD 512

Query: 213 VDEARGLLQQMK 224
           ++EAR +L++++
Sbjct: 513 LEEARKMLERLE 524



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/113 (34%), Positives = 54/113 (47%), Gaps = 9/113 (7%)

Query: 121 DVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGD 180
           +V+  T +I+    A +  EA   F +M   G  PN +TY VLI G         K+   
Sbjct: 6   NVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGF-------CKVHKV 58

Query: 181 AQKYLM--EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            + YL+  EM   G+ PN  TY+ V   F R  KVD A  L +QM   G +P+
Sbjct: 59  HRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPN 111



 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 7/155 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   K G   EA ++  ++  +G  P+VV +TA+I+A+  AG+   A ++   M+ +G
Sbjct: 433 LVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNG 492

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV-GKGMRPNAGTYTAVFEAFVRAQ 211
           V PN  TY  LI G     D     L +A+K L  +   +  + +   Y  + +   R  
Sbjct: 493 VQPNVITYRSLIGGFCGTGD-----LEEARKMLERLERDENCKADMFAYRVMMDGLCRTG 547

Query: 212 KVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
           ++  A  LL+ +K  G  P    +  ALI    QG
Sbjct: 548 RMSAALELLEAIKQSG-TPPRHDIYVALIRGLCQG 581



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/177 (22%), Positives = 71/177 (40%), Gaps = 13/177 (7%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +M+  GL  N V    +     +      A +LF Q+ + G MP++V +  ++    
Sbjct: 64  LLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLC 123

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA--DGNAKILGDAQKYLMEMVGK 191
             G   EA  +   M   G+ P+ ++Y  L+ GL      D   K+  D           
Sbjct: 124 RNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSN-------G 176

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFR 248
              P+   Y+ +     +  ++DEA  L ++M+     PD      AL+D   +G R
Sbjct: 177 DCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFT-ALMDGLCKGDR 232



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 67/153 (43%), Gaps = 10/153 (6%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQI-KDKGHMPDVVAHTAVIEA 131
           ++  +M   G+  N +    +       G   EA ++  ++ +D+    D+ A+  +++ 
Sbjct: 483 KLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKMLERLERDENCKADMFAYRVMMDG 542

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM-VG 190
               G+   AL +   +  SG  P    Y  LI+GL        K LG A + L EM + 
Sbjct: 543 LCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLC-----QGKELGKAMEVLEEMTLS 597

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           +  RPNA  Y AV +   R  + +EA  L  ++
Sbjct: 598 RKSRPNAEAYEAVIQELAREGRHEEANALADEL 630


>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
 gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 81/161 (50%), Gaps = 8/161 (4%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +++F++M  +GLT N V    +   L + G   EA  LF  +   G++P++  ++ +++ 
Sbjct: 398 KQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNLPNLFTYSILLDG 457

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +   G   +A R+F  M ++   PN   Y +LI  +  + +     L DA+K   E+  K
Sbjct: 458 FCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKSGN-----LRDARKLFSELFVK 512

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           G++PNA  YT +     +   +DEA    + M+  G  PDE
Sbjct: 513 GLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDE 553



 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 84/176 (47%), Gaps = 8/176 (4%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           + ++MR+  +  + V    + D + K+G   EA  +   + + G  PDVV +++++  Y+
Sbjct: 295 LLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYS 354

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
              +  EA ++F  M+  G  P+ ++Y +LI G         K + +A++   EM+ +G+
Sbjct: 355 LRSEVVEARKLFDAMITKGCKPDVFSYNILINGYC-----KVKRIDEAKQLFNEMIHQGL 409

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRG 249
            PN  +Y  +     +   + EAR L + M   G +P+       L     QG+ G
Sbjct: 410 TPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFG 465



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 77/159 (48%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F  M   G   +      + + L K G T  A  L  ++++ G  P+VV ++ +I+++
Sbjct: 189 ELFDDMVARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSH 248

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               +  EAL +F  M   G++P+ +TY  LI+GL      N     +A   L EM    
Sbjct: 249 RKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLC-----NFSQWKEASALLNEMRSLN 303

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + P+  T+  + +   +  KV EA+G+L+ M   G  PD
Sbjct: 304 IMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPD 342



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/182 (23%), Positives = 83/182 (45%), Gaps = 10/182 (5%)

Query: 55  PPYDPFKKVVDEEPTDPR--NLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQL 109
           P    +  ++D    D R     +IF  M+ +G++ +      +   L       EA  L
Sbjct: 236 PNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASAL 295

Query: 110 FAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169
             +++    MPD+V    +++     G+  EA  V   M   GV P+  TY+ L+ G + 
Sbjct: 296 LNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSL 355

Query: 170 AADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFV 229
            ++     + +A+K    M+ KG +P+  +Y  +   + + +++DEA+ L  +M  +G  
Sbjct: 356 RSE-----VVEARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLT 410

Query: 230 PD 231
           P+
Sbjct: 411 PN 412



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 73/163 (44%), Gaps = 8/163 (4%)

Query: 72  RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R  + +F  M T G   N      + D   K G   +A +LF  ++     P++V +  +
Sbjct: 430 REARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNIL 489

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I+A   +G  ++A ++F  +   G+ PNA  Y  +I GL         +L +A +    M
Sbjct: 490 IDAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEG-----LLDEALEAFRNM 544

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              G  P+  +Y  +   F+  +    A  L+ +M+ KGF+ D
Sbjct: 545 EEDGCPPDEISYNVIIRGFLHHKDESRAVQLIGEMRDKGFIAD 587



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 5/107 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DA+ K G   +A +LF+++  KG  P+   +T +I      G   EAL  F  M   G
Sbjct: 489 LIDAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDG 548

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGT 199
             P+  +Y V+I+G     D +      A + + EM  KG   + GT
Sbjct: 549 CPPDEISYNVIIRGFLHHKDESR-----AVQLIGEMRDKGFIADVGT 590



 Score = 46.6 bits (109), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 61/128 (47%), Gaps = 6/128 (4%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE-ALRVFMRMLASGVAPNAYTYAVL 163
           +AL  F  +  +  +P ++  T ++ A    GQ  +  + +  +M  +G++PN YT ++L
Sbjct: 80  DALASFNHMLHRKPLPCIIQFTKLLSAIVKMGQYYDTVISLTKQMELAGLSPNIYTLSIL 139

Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           I   +     + + +  A   L +++  G++P   T+T +     +  K  +A  L   M
Sbjct: 140 INCFS-----HLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELFDDM 194

Query: 224 KAKGFVPD 231
            A+G  PD
Sbjct: 195 VARGCRPD 202



 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 3/93 (3%)

Query: 72  RNLQEIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R+ +++F ++  +GL  NA     + + L K+GL  EAL+ F  +++ G  PD +++  +
Sbjct: 500 RDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEISYNVI 559

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYA 161
           I  +        A+++   M   G   +  T A
Sbjct: 560 IRGFLHHKDESRAVQLIGEMRDKGFIADVGTTA 592


>gi|410109947|gb|AFV61053.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           salviifolia]
          Length = 431

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 114/237 (48%), Gaps = 15/237 (6%)

Query: 2   AATAILRWLLHSPSPKRS-LRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPF 60
           +A+A+   +L +   +RS + + +  + A L+      + +  +  +  + KL  P+D  
Sbjct: 53  SASAVFAAILETKGTQRSDIYVFSGLITAYLESGFLRDAIECYR--LTREHKLWVPFDTC 110

Query: 61  KKVVDEEPTDPRNLQEI--FHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIK 114
           +KV+ E     +  + +  F++   E     ++  F+ L     KDG    A  +F  I 
Sbjct: 111 RKVL-EYLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAIT 169

Query: 115 DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174
             G  P  V++  ++  Y   G   E  R+   MLASGV P+ YTY+VLI GL+  +   
Sbjct: 170 KWGLRPSAVSYNTLMNGYIRLGVLDEGFRLKSAMLASGVQPDVYTYSVLINGLSKESK-- 227

Query: 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              + DA +   EM+ KG+ PN  T+T + +   +  +VD A  + +QM ++  +PD
Sbjct: 228 ---MDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPD 281



 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 81/188 (43%), Gaps = 33/188 (17%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F +M  +GL  N V    + D   K+G    A++++ Q+  +  +PD++ +  +I   
Sbjct: 233 ELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGL 292

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN------------------ 174
              G  K+A  +   M   G+ P+  TY  LI G     D +                  
Sbjct: 293 CKKGDLKQAHDLIDDMSRKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDD 352

Query: 175 ----AKILG--------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
               A I G        DA+K L EM+  G+ P+ GTYT +   F +   V +   LL++
Sbjct: 353 VVYTALISGLCQEGRSVDAEKMLREMLSVGLNPDTGTYTMIINEFCKKGDVWKGSKLLKE 412

Query: 223 MKAKGFVP 230
           M+  G VP
Sbjct: 413 MQRDGHVP 420



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 77/158 (48%), Gaps = 6/158 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + LSK+    +A +LF ++  KG +P+ V  T +I+ +   G+   A+ ++ +ML+  
Sbjct: 218 LINGLSKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQS 277

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+  TY  LI GL    D     L  A   + +M  KG++P+  TYT + +   +   
Sbjct: 278 LLPDLITYNTLIYGLCKKGD-----LKQAHDLIDDMSRKGLKPDKITYTTLIDGCCKEGD 332

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGV 250
           +D A    ++M  +    D+  V  ALI    Q  R V
Sbjct: 333 LDSAFEHRKRMIQENIRLDD-VVYTALISGLCQEGRSV 369


>gi|357442909|ref|XP_003591732.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480780|gb|AES61983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 344

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 95/190 (50%), Gaps = 23/190 (12%)

Query: 82  RTEG-LTNNAVKMF----DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           + EG L N+ V M+    D L KD L ++A +L++++  +   PDV    ++I  +   G
Sbjct: 7   QIEGKLVNSDVVMYNTIIDGLCKDKLVNDAYELYSEMIAEKISPDVATFNSLIYGFCIIG 66

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196
           Q K+A  +F +M+   + P+ YT+ +L+ GL    +G  K   +A+  +  M+  G+ PN
Sbjct: 67  QLKDAFGLFSQMVLKNINPSVYTFTILVDGL--CKEGKMK---EAKSVIAMMMKDGVLPN 121

Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE-------------KAVKEALIDKR 243
             TYT++ E +    +V++ + + + +   G  P+              K V EALI  +
Sbjct: 122 VVTYTSIMEGYCLVNEVNKTKHVFRTISRMGVAPNTQSYNIMINGFCKIKIVNEALILFK 181

Query: 244 GQGFRGVINI 253
               RG++ I
Sbjct: 182 EMCCRGIVPI 191



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 75/185 (40%), Gaps = 43/185 (23%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGK------------- 139
           + D L K+G   EA  + A +   G +P+VV +T+++E Y    +               
Sbjct: 93  LVDGLCKEGKMKEAKSVIAMMMKDGVLPNVVTYTSIMEGYCLVNEVNKTKHVFRTISRMG 152

Query: 140 ----------------------EALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKI 177
                                 EAL +F  M   G+ P   TY+ LI GL  +      +
Sbjct: 153 VAPNTQSYNIMINGFCKIKIVNEALILFKEMCCRGIVPITVTYSSLIDGLCKST-----M 207

Query: 178 LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKE 237
           LG      M MV   + P    Y    +A  ++  +D+A  L++++K +G + + + V +
Sbjct: 208 LGSLLMRCMLMVNHLIYPLTVLY---IDALCKSNHLDKAIALVKKIKDQGRLKNAQDVFQ 264

Query: 238 ALIDK 242
            L+ K
Sbjct: 265 DLLIK 269



 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 24/142 (16%)

Query: 90  AVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRML 149
            V   DAL K     +A+ L  +IKD+G +                   K A  VF  +L
Sbjct: 227 TVLYIDALCKSNHLDKAIALVKKIKDQGRL-------------------KNAQDVFQDLL 267

Query: 150 ASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
             G + N  TY ++I GL         +  +A+  L +M   G+ P+A TY     A   
Sbjct: 268 IKGYSLNIQTYNIMINGLCKEG-----LFDEAEALLSKMDDYGIIPDAVTYETNIRALFH 322

Query: 210 AQKVDEARGLLQQMKAKGFVPD 231
             + ++A  L ++M A+G + +
Sbjct: 323 KDENEKAEKLFRKMIARGLLKE 344



 Score = 45.1 bits (105), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 3/85 (3%)

Query: 72  RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           +N Q++F  +  +G + N      M + L K+GL  EA  L +++ D G +PD V +   
Sbjct: 257 KNAQDVFQDLLIKGYSLNIQTYNIMINGLCKEGLFDEAEALLSKMDDYGIIPDAVTYETN 316

Query: 129 IEAYASAGQGKEALRVFMRMLASGV 153
           I A     + ++A ++F +M+A G+
Sbjct: 317 IRALFHKDENEKAEKLFRKMIARGL 341


>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
          Length = 648

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 82/158 (51%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F++M  +G+  + V    +   L  DG   +  ++  ++  +  +PDVV  +A+I+ + 
Sbjct: 296 LFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFV 355

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G+  EA  ++  M+  G+AP+  TY  LI G           L +A +    MV KG 
Sbjct: 356 KEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFC-----KENCLHEANQMFDLMVSKGC 410

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            P+  TY+ +  ++ +A++VD+   L +++ +KG +P+
Sbjct: 411 EPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPN 448



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 81/153 (52%), Gaps = 8/153 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E++++M T G+  + +    + D   K+   HEA Q+F  +  KG  PD+V ++ +I +
Sbjct: 364 KELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINS 423

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y  A +  + +R+F  + + G+ PN  TY  L+ G   +   NA     A++   EMV +
Sbjct: 424 YCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNA-----AKELFQEMVSR 478

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           G+ P+  TY  + +      ++++A  + ++M+
Sbjct: 479 GVPPSVVTYGILLDGLCDNGELNKALEIFEKMQ 511



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 71/138 (51%), Gaps = 5/138 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   K+G   EA +L+ ++  +G  PD + + ++I+ +       EA ++F  M++ G
Sbjct: 350 LIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKG 409

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  TY++LI          AK + D  +   E+  KG+ PN  TY  +   F ++ K
Sbjct: 410 CEPDIVTYSILINSYC-----KAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGK 464

Query: 213 VDEARGLLQQMKAKGFVP 230
           ++ A+ L Q+M ++G  P
Sbjct: 465 LNAAKELFQEMVSRGVPP 482



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 74/159 (46%), Gaps = 8/159 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F ++ ++GL  N +    +     + G  + A +LF ++  +G  P VV +  +++   
Sbjct: 436 LFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLC 495

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G+  +AL +F +M  S +      Y ++I G+      NA  + DA      +  KG+
Sbjct: 496 DNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMC-----NASKVDDAWSLFCSLSDKGV 550

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           +P+  TY  +     +   + EA  L ++MK  G  PD+
Sbjct: 551 KPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDD 589



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 77/184 (41%), Gaps = 41/184 (22%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPD------------------------------- 121
           + + L   G   EAL L  ++ + G  PD                               
Sbjct: 210 LINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERN 269

Query: 122 ----VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKI 177
               VV ++ VI++    G   +AL +F  M   G+  +  TY+ LI GL    DG    
Sbjct: 270 IKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGL--CNDGKWD- 326

Query: 178 LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKE 237
             D  K L EM+G+ + P+  T++A+ + FV+  K+ EA+ L  +M  +G  PD      
Sbjct: 327 --DGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPD-TITYN 383

Query: 238 ALID 241
           +LID
Sbjct: 384 SLID 387



 Score = 63.5 bits (153), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 80/175 (45%), Gaps = 11/175 (6%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+F +M + G+  + V    + D L  +G  ++AL++F +++       +  +  +I  
Sbjct: 469 KELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHG 528

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
             +A +  +A  +F  +   GV P+  TY V+I GL          L +A     +M   
Sbjct: 529 MCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGS-----LSEADMLFRKMKED 583

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK---EALIDKR 243
           G  P+  TY  +  A +    +  +  L+++MK  GF  D   +K   + L D+R
Sbjct: 584 GCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVIDMLSDRR 638



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 64/139 (46%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +    +G   EA+ L  ++ +    PD+V  + +I      G+  EAL +  RM+  G
Sbjct: 175 LVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYG 234

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  TY  ++  L  +  GN+ +  D  + + E   + ++ +   Y+ V ++  +   
Sbjct: 235 FQPDEVTYGPVLNRLCKS--GNSALALDLFRKMEE---RNIKASVVQYSIVIDSLCKDGS 289

Query: 213 VDEARGLLQQMKAKGFVPD 231
            D+A  L  +M+ KG   D
Sbjct: 290 FDDALSLFNEMEMKGIKAD 308



 Score = 39.7 bits (91), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 25/110 (22%), Positives = 48/110 (43%), Gaps = 5/110 (4%)

Query: 117 GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK 176
           G+ PD +  + ++  +   G+  EA+ +  RM+     P+  T + LI GL         
Sbjct: 164 GYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGR---- 219

Query: 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK 226
            + +A   +  MV  G +P+  TY  V     ++     A  L ++M+ +
Sbjct: 220 -VSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEER 268


>gi|222640196|gb|EEE68328.1| hypothetical protein OsJ_26607 [Oryza sativa Japonica Group]
          Length = 461

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 86/177 (48%), Gaps = 10/177 (5%)

Query: 53  LPPPYDPFKKVVDE--EPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEAL 107
            PP    +  ++D   +  D       +H+M   G+  + V    +  AL K     +A+
Sbjct: 202 CPPDVVSYSTIIDGLFKEGDSDKAYSTYHEMLERGILPDVVTYNTIVAALCKAQAMDKAM 261

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
            +  ++   G MPD + + +++  Y S+GQ KEA+ +  +M + GV P+A TY  L+  L
Sbjct: 262 DVLNRMVKNGVMPDCITYNSIVHGYCSSGQSKEAIGILEKMCSDGVEPDAVTYTSLMDYL 321

Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
                 N + + +A+K L  M+ +G++PN  TY+ +   +     + E R LL  M+
Sbjct: 322 CK----NGRCI-EARKILDSMIKRGLKPNVITYSTLLHGYATKGALVEMRDLLDLMQ 373



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 75/139 (53%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K+G + +A   + ++ ++G +PDVV +  ++ A   A    +A+ V  RM+ +G
Sbjct: 212 IIDGLFKEGDSDKAYSTYHEMLERGILPDVVTYNTIVAALCKAQAMDKAMDVLNRMVKNG 271

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V P+  TY  ++ G  ++  G +K   +A   L +M   G+ P+A TYT++ +   +  +
Sbjct: 272 VMPDCITYNSIVHGYCSS--GQSK---EAIGILEKMCSDGVEPDAVTYTSLMDYLCKNGR 326

Query: 213 VDEARGLLQQMKAKGFVPD 231
             EAR +L  M  +G  P+
Sbjct: 327 CIEARKILDSMIKRGLKPN 345



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 10/183 (5%)

Query: 54  PPPYDPFKKVVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLF 110
           P  + P  K +  E      +  +  +M   G   +      +   L  +  + EAL+L 
Sbjct: 133 PIIFTPLLKSLCAEKRTSNAMNIVLRRMTELGCAPHVFSYNILLKGLCHESRSQEALELL 192

Query: 111 AQIKDKG--HMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
             + D G    PDVV+++ +I+     G   +A   +  ML  G+ P+  TY  ++  L 
Sbjct: 193 HMMADDGGDCPPDVVSYSTIIDGLFKEGDSDKAYSTYHEMLERGILPDVVTYNTIVAALC 252

Query: 169 AAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
                 A+ +  A   L  MV  G+ P+  TY ++   +  + +  EA G+L++M + G 
Sbjct: 253 -----KAQAMDKAMDVLNRMVKNGVMPDCITYNSIVHGYCSSGQSKEAIGILEKMCSDGV 307

Query: 229 VPD 231
            PD
Sbjct: 308 EPD 310


>gi|224067108|ref|XP_002302359.1| predicted protein [Populus trichocarpa]
 gi|222844085|gb|EEE81632.1| predicted protein [Populus trichocarpa]
          Length = 375

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 74/140 (52%), Gaps = 5/140 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M  AL KDG    A++L  Q+  KG  P ++ +  VI+  +  G+  +A+ +   M   G
Sbjct: 197 MLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVELLHEMRGKG 256

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+  TY+ LI GL  + +G  +   +A K+  ++ G G++PNA TY ++     +AQ+
Sbjct: 257 LKPDVITYSSLIAGL--SREGKVE---EAIKFFHDVEGFGVKPNAFTYNSIMFGLCKAQQ 311

Query: 213 VDEARGLLQQMKAKGFVPDE 232
            D A   L  M +KG  P E
Sbjct: 312 TDRAIDFLAYMISKGCKPTE 331



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 86/164 (52%), Gaps = 12/164 (7%)

Query: 76  EIFHKMRTEG-----LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           E+ +++ ++G     +T N V   D LSK G T +A++L  +++ KG  PDV+ ++++I 
Sbjct: 212 ELLNQLSSKGCSPVLITYNTV--IDGLSKVGKTDQAVELLHEMRGKGLKPDVITYSSLIA 269

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
             +  G+ +EA++ F  +   GV PNA+TY  ++ GL  A   +  I      +L  M+ 
Sbjct: 270 GLSREGKVEEAIKFFHDVEGFGVKPNAFTYNSIMFGLCKAQQTDRAI-----DFLAYMIS 324

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
           KG +P   +YT + E         EA  LL ++ ++G V    A
Sbjct: 325 KGCKPTEVSYTILIEGIANEGLAKEALELLNELCSRGVVKKSSA 368



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 68/139 (48%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + + K+G   EA++    +   G  P+V+ H  ++ +  S G+  +A ++   M+  G
Sbjct: 57  LVNGMCKEGRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKG 116

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            +P+  T+ +LI  L         +LG A   L +M   G  PN+ +Y  +   F + +K
Sbjct: 117 CSPSVVTFNILINFLCRKG-----LLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKK 171

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +D A   L+ M ++G  PD
Sbjct: 172 MDRAIQYLEIMVSRGCYPD 190



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +I  KM T G T N++    +     K+     A+Q    +  +G  PD+V +  ++ A 
Sbjct: 142 DILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPDIVTYNTMLTAL 201

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+   A+ +  ++ + G +P   TY  +I GL+     +      A + L EM GKG
Sbjct: 202 CKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTD-----QAVELLHEMRGKG 256

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           ++P+  TY+++     R  KV+EA      ++  G  P+
Sbjct: 257 LKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPN 295



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 65/139 (46%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +A   +    +A++L  ++  +G  PDVV +  ++      G+  EA++    M + G
Sbjct: 22  LIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMCKEGRLDEAIKFLNSMPSYG 81

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN  T+ ++++ + +          DA+K L EMV KG  P+  T+  +     R   
Sbjct: 82  SQPNVITHNIILRSMCSTGRWM-----DAEKLLTEMVRKGCSPSVVTFNILINFLCRKGL 136

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +  A  +L++M   G  P+
Sbjct: 137 LGRAIDILEKMPTHGCTPN 155



 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 5/116 (4%)

Query: 115 DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174
           +K   PDV+ +T +IEA  +     +A+++   M + G  P+  TY VL+ G+       
Sbjct: 9   EKECYPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMCKEGR-- 66

Query: 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
              L +A K+L  M   G +PN  T+  +  +     +  +A  LL +M  KG  P
Sbjct: 67  ---LDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSP 119



 Score = 40.4 bits (93), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 5/92 (5%)

Query: 78  FHKMRTEGLTNNAVK----MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           FH +   G+  NA      MF  L K   T  A+   A +  KG  P  V++T +IE  A
Sbjct: 284 FHDVEGFGVKPNAFTYNSIMF-GLCKAQQTDRAIDFLAYMISKGCKPTEVSYTILIEGIA 342

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           + G  KEAL +   + + GV   +    V+++
Sbjct: 343 NEGLAKEALELLNELCSRGVVKKSSAEQVVVR 374


>gi|410109899|gb|AFV61029.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           micrantha]
          Length = 431

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 114/239 (47%), Gaps = 19/239 (7%)

Query: 2   AATAILRWLLHSPSPKRS-LRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPF 60
           +A+A+   +L +   +RS + + +  + A L+      + +  +  +  + KL  P+D  
Sbjct: 53  SASAVFAAVLETKGNQRSDIYVFSGLITAYLESGFLRDAIECYR--LTREHKLWVPFDTC 110

Query: 61  KKVVDEEPTDPRNLQEI--FHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIK 114
           +KV+ E     +  + +  F++   E     ++  F+ L     KDG    A  +F  I 
Sbjct: 111 RKVL-EHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAIT 169

Query: 115 DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA--AAAD 172
             G  P VV++  ++  Y   G   E  R+   MLASGV P+ YTY+VLI GL   +  D
Sbjct: 170 KWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMD 229

Query: 173 GNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G       A +   EM+ KG+ PN  T+T + +   +  +VD A  + +QM ++  +PD
Sbjct: 230 G-------ANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPD 281



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 85/201 (42%), Gaps = 35/201 (17%)

Query: 63  VVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM 119
           +  E   D  N  E+F +M  +GL  N V    + D   K+G    A++++ Q+  +  +
Sbjct: 222 LCKESKMDGAN--ELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLL 279

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN----- 174
           PD++ +  +I      G  K+A  +   M   G+ P+ +TY  LI G     D +     
Sbjct: 280 PDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEH 339

Query: 175 -----------------AKILG--------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
                            A I G        DA+K L EM+  G++P+ GTYT +   F +
Sbjct: 340 RKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCK 399

Query: 210 AQKVDEARGLLQQMKAKGFVP 230
              V +   LL++M   G  P
Sbjct: 400 KGDVWKGSKLLKEMHRDGHAP 420


>gi|255555231|ref|XP_002518652.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542033|gb|EEF43577.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 827

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 79/164 (48%), Gaps = 8/164 (4%)

Query: 71  PRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P+   E+  +M   G + + V    +  A ++DGL  EA++L  Q+ +KG  PDV  +T 
Sbjct: 339 PKEAMEVLKEMEFSGFSPSIVTYNSLISAYARDGLLREAMELKDQMVEKGIKPDVFTYTT 398

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           ++  +  AG  + A+R+F  M A+G  PN  T+  LIK       GN     +  K   E
Sbjct: 399 LLSGFEKAGMDEPAMRIFGEMRAAGCKPNICTFNALIK-----MHGNRGRFAEMMKVFEE 453

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +      P+  T+  +   F +     E  G+ ++MK  GFVP+
Sbjct: 454 IEICNCAPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPE 497



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 84/174 (48%), Gaps = 13/174 (7%)

Query: 77  IFHKMRTEGL-----TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + H M++ G+     T N   +     +  L  EA Q+F ++K  G  PD V    +++ 
Sbjct: 275 LVHGMKSSGVAPDDYTYNT--LISCCRRGSLYEEAAQVFEEMKLSGFSPDKVTFNTLLDV 332

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y  + + KEA+ V   M  SG +P+  TY  LI   A A DG   +L +A +   +MV K
Sbjct: 333 YGKSRRPKEAMEVLKEMEFSGFSPSIVTYNSLIS--AYARDG---LLREAMELKDQMVEK 387

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
           G++P+  TYT +   F +A   + A  +  +M+A G  P+      ALI   G 
Sbjct: 388 GIKPDVFTYTTLLSGFEKAGMDEPAMRIFGEMRAAGCKPN-ICTFNALIKMHGN 440



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 70/152 (46%), Gaps = 5/152 (3%)

Query: 97  LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
           L K+G    A  +   ++  G   DV A+T++I AYAS G+ ++A+ VF +M   G  P 
Sbjct: 192 LGKEGKVSAASSILNNLRKDGFDLDVYAYTSLITAYASNGRYRDAVLVFKKMEEEGCKPT 251

Query: 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
             TY V++          +KI G        M   G+ P+  TY  +     R    +EA
Sbjct: 252 LITYNVILNVYGKMGMPWSKISGLVHG----MKSSGVAPDDYTYNTLISCCRRGSLYEEA 307

Query: 217 RGLLQQMKAKGFVPDEKAVKEALIDKRGQGFR 248
             + ++MK  GF PD K     L+D  G+  R
Sbjct: 308 AQVFEEMKLSGFSPD-KVTFNTLLDVYGKSRR 338



 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 74/159 (46%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F +M+  G + + V    + D   K     EA+++  +++  G  P +V + ++I AY
Sbjct: 309 QVFEEMKLSGFSPDKVTFNTLLDVYGKSRRPKEAMEVLKEMEFSGFSPSIVTYNSLISAY 368

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           A  G  +EA+ +  +M+  G+ P+ +TY  L+ G   A          A +   EM   G
Sbjct: 369 ARDGLLREAMELKDQMVEKGIKPDVFTYTTLLSGFEKAGMDEP-----AMRIFGEMRAAG 423

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +PN  T+ A+ +      +  E   + ++++     PD
Sbjct: 424 CKPNICTFNALIKMHGNRGRFAEMMKVFEEIEICNCAPD 462



 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 67/131 (51%), Gaps = 5/131 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +     ++G+  E   +F ++K  G +P+      +I AY+  G  ++A+ V+ RML +G
Sbjct: 469 LLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGSFQQAMAVYKRMLEAG 528

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V P+  +Y  +   LAA A G   +   ++K   EM     +PN  TY ++  A+  +++
Sbjct: 529 VTPDLSSYNAV---LAALARGG--LWEQSEKVFAEMKDGRCKPNELTYCSLLHAYANSKE 583

Query: 213 VDEARGLLQQM 223
           ++    L +++
Sbjct: 584 IERMHTLAEEI 594



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 5/109 (4%)

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
           ++  +I  KG  PD++++  VI AY   G+ K+A R+F  M   G+ P+  TY   +   
Sbjct: 693 EVLKEILAKGLKPDLISYNTVIFAYCRNGRMKDASRIFSYMKTYGLVPDVITYNTFVASY 752

Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
           AA +     +  DA   +  M+  G + N  TY ++ + + +  +  +A
Sbjct: 753 AADS-----LFEDAIGVVRYMIKHGCKRNQNTYNSIVDGYCKHSRRADA 796



 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 6/134 (4%)

Query: 98  SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA 157
           SK  L  E    F ++K KG  PD+    A+I  Y       +A  +   M  SG +P+ 
Sbjct: 614 SKCDLLMETEHAFEELKKKGS-PDLSTLNAMIAIYGRRQMVAKANEILNFMNESGFSPSL 672

Query: 158 YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
            TY  L+          ++    +++ L E++ KG++P+  +Y  V  A+ R  ++ +A 
Sbjct: 673 ATYNSLM-----YMHSRSENFERSEEVLKEILAKGLKPDLISYNTVIFAYCRNGRMKDAS 727

Query: 218 GLLQQMKAKGFVPD 231
            +   MK  G VPD
Sbjct: 728 RIFSYMKTYGLVPD 741



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 71/177 (40%), Gaps = 15/177 (8%)

Query: 60  FKKVVDEEPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSK----DGLTHEALQLFAQIKD 115
           F+K   +EP        IF +MR  G   N +  F+AL K     G   E +++F +I+ 
Sbjct: 403 FEKAGMDEPA-----MRIFGEMRAAGCKPN-ICTFNALIKMHGNRGRFAEMMKVFEEIEI 456

Query: 116 KGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNA 175
               PD+V    ++  +   G   E   VF  M  +G  P   T+  LI   +       
Sbjct: 457 CNCAPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGS--- 513

Query: 176 KILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
                A      M+  G+ P+  +Y AV  A  R    +++  +  +MK     P+E
Sbjct: 514 --FQQAMAVYKRMLEAGVTPDLSSYNAVLAALARGGLWEQSEKVFAEMKDGRCKPNE 568



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/187 (21%), Positives = 73/187 (39%), Gaps = 34/187 (18%)

Query: 77  IFHKMRTEGLT---NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M+  G     +    +  A S+ G   +A+ ++ ++ + G  PD+ ++ AV+ A A
Sbjct: 485 VFKEMKRAGFVPERDTFNTLISAYSRCGSFQQAMAVYKRMLEAGVTPDLSSYNAVLAALA 544

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAA----------------------- 170
             G  +++ +VF  M      PN  TY  L+   A +                       
Sbjct: 545 RGGLWEQSEKVFAEMKDGRCKPNELTYCSLLHAYANSKEIERMHTLAEEIYSGLTEPVPV 604

Query: 171 -------ADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
                   +    +L + +    E+  KG  P+  T  A+   + R Q V +A  +L  M
Sbjct: 605 LLKTLVLVNSKCDLLMETEHAFEELKKKG-SPDLSTLNAMIAIYGRRQMVAKANEILNFM 663

Query: 224 KAKGFVP 230
              GF P
Sbjct: 664 NESGFSP 670



 Score = 42.4 bits (98), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 50/96 (52%), Gaps = 3/96 (3%)

Query: 74  LQEIFHK-MRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           L+EI  K ++ + ++ N V    A  ++G   +A ++F+ +K  G +PDV+ +   + +Y
Sbjct: 695 LKEILAKGLKPDLISYNTVIF--AYCRNGRMKDASRIFSYMKTYGLVPDVITYNTFVASY 752

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
           A+    ++A+ V   M+  G   N  TY  ++ G  
Sbjct: 753 AADSLFEDAIGVVRYMIKHGCKRNQNTYNSIVDGYC 788


>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
          Length = 694

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 83/160 (51%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +++F +M  EGL  + V    +     K G  HE+L +F+++  +G +PDVV  T++I A
Sbjct: 243 RKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHA 302

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              AG  ++A+ +  +M   G+  N  T+  LI G           L DA   + EM   
Sbjct: 303 TCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKG-----FLDDALLAVEEMRKC 357

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G++P+   Y A+   + +  ++D AR L+++M+AK   PD
Sbjct: 358 GIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPD 397



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 8/155 (5%)

Query: 80  KMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           +MR  G+  + V    + +   K G    A +L  +++ K   PDVV ++ +I  Y   G
Sbjct: 353 EMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVG 412

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196
               A ++  +ML  GV P+A TY+ LI+GL        K L DA +    M+  G++P+
Sbjct: 413 NLDSAFQLNQKMLKKGVLPDAITYSSLIRGLC-----EEKRLNDACELFENMLQLGVQPD 467

Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             TYT + +   +   V++A  L  +M  KG +PD
Sbjct: 468 EFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPD 502



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 8/156 (5%)

Query: 80  KMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           +MR  GL  N V    + D   K G   +AL    +++  G  P VV + A+I  Y   G
Sbjct: 318 QMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLG 377

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196
           +   A  +   M A  V P+  TY+ +I G     +     L  A +   +M+ KG+ P+
Sbjct: 378 RMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGN-----LDSAFQLNQKMLKKGVLPD 432

Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           A TY+++       +++++A  L + M   G  PDE
Sbjct: 433 AITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDE 468



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 82/165 (49%), Gaps = 10/165 (6%)

Query: 81  MRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM-PDVVAHTAVIEAYASAG 136
           MR  G   NAV    +  A  + G    A ++ + ++++G+  P++V   +++     AG
Sbjct: 178 MRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAG 237

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196
           + + A +VF  M+  G+AP+  +Y  L+ G           L ++     EM  +G+ P+
Sbjct: 238 RMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVG-----CLHESLAVFSEMTQRGLVPD 292

Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
             T+T++  A  +A  +++A  L+ QM+ +G   +E     ALID
Sbjct: 293 VVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFT-ALID 336



 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 88/189 (46%), Gaps = 12/189 (6%)

Query: 73  NLQEIFH---KMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           NL   F    KM  +G+  +A+    +   L ++   ++A +LF  +   G  PD   +T
Sbjct: 413 NLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYT 472

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
            +I+ +   G  ++AL +   M+  GV P+  TY+VLI GL+ +A        +A + L 
Sbjct: 473 TLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTK-----EAHRLLF 527

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
           ++  +   P+   Y A+     +A+       LL+    KG + +   V ++++D+  + 
Sbjct: 528 KLYHEDPVPDNIKYDALMLCCSKAE-FKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKL 586

Query: 247 FRGVINILF 255
              V +IL 
Sbjct: 587 DGSVYSILI 595



 Score = 53.9 bits (128), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 65/157 (41%), Gaps = 31/157 (19%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A +  + +   G  P+V  +  ++ A  + G+ +EA+ V   M  +G APNA TY  L+ 
Sbjct: 136 ARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVA 195

Query: 166 GLAAAA--------------DGNAK-----------------ILGDAQKYLMEMVGKGMR 194
               A               +GNAK                  +  A+K   EMV +G+ 
Sbjct: 196 AFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLA 255

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           P+  +Y  +   + +   + E+  +  +M  +G VPD
Sbjct: 256 PDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPD 292



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 73/172 (42%), Gaps = 13/172 (7%)

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F  M   G+  +      + D   K+G   +AL L  ++  KG +PDVV ++ +I   
Sbjct: 454 ELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGL 513

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLI--------KGLAAAADGNAK--ILGDAQ 182
           + + + KEA R+  ++      P+   Y  L+        K + A   G     ++ +A 
Sbjct: 514 SKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEAD 573

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
           K    M+ +  + +   Y+ +     R   V +A    +QM   GF P+  +
Sbjct: 574 KVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTS 625



 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 53/135 (39%), Gaps = 39/135 (28%)

Query: 127 AVIEAYASA----------------------------------GQGKEALRVFMRMLASG 152
           A+I +YAS                                        A R    ML  G
Sbjct: 88  ALIRSYASLPRPSLAAAALAFAASAGYAPSVPAYNAVLLALSDASLPSARRFLSSMLRHG 147

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           VAPN YTY +L++ L A        L +A   + +M G G  PNA TY  +  AF RA +
Sbjct: 148 VAPNVYTYNILVRALCARGR-----LEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGE 202

Query: 213 VDEARGLLQQMKAKG 227
           +D A  ++  M+ +G
Sbjct: 203 LDGAERVVSLMREEG 217



 Score = 38.9 bits (89), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 39/79 (49%)

Query: 89  NAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRM 148
           + V +       GL  EA +++  + D+    D   ++ +I  +   G  ++AL    +M
Sbjct: 555 SVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQM 614

Query: 149 LASGVAPNAYTYAVLIKGL 167
           L SG +PN+ +   L++GL
Sbjct: 615 LRSGFSPNSTSTISLVRGL 633


>gi|125564557|gb|EAZ09937.1| hypothetical protein OsI_32236 [Oryza sativa Indica Group]
          Length = 544

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 78/165 (47%), Gaps = 10/165 (6%)

Query: 71  PRNLQEIFHKMRTEGL----TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           P    ++F +M   G           +  ALSK  L  EA  +F   K     PDVV +T
Sbjct: 196 PSEASDLFRRMEEYGAGAPDPATLASLLGALSKKRLASEAQAMFDSYKSV-FTPDVVLYT 254

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
            ++ A+  +G+  EA RVF  M  +GV PN YTY  +I  +  A       +  AQ+ L 
Sbjct: 255 TLVHAWCRSGRLDEAERVFAEMQQAGVTPNVYTYTAVIDAMYRAGQ-----VPRAQELLC 309

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +M+  G  PN  T+ A+  A V+A + ++   +  QM+  G  PD
Sbjct: 310 QMIDSGCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQLGCEPD 354



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 75/160 (46%), Gaps = 6/160 (3%)

Query: 75  QEIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +F +M+  G+T N      + DA+ + G    A +L  Q+ D G  P+     A++ A
Sbjct: 270 ERVFAEMQQAGVTPNVYTYTAVIDAMYRAGQVPRAQELLCQMIDSGCPPNTATFNAIMRA 329

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +  AG+ ++ L+V  +M   G  P+  TY  L++        N   L  A K L  M+ K
Sbjct: 330 HVKAGRSEQVLQVHNQMRQLGCEPDIITYNFLMETHCGKGQSN---LDAAMKMLTRMIAK 386

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G  P+  T+  + +  +    V+ AR L ++M+     P+
Sbjct: 387 GCIPDCHTFNPMLKLVLVLGNVNAARKLYERMQELQCKPN 426



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 90/210 (42%), Gaps = 40/210 (19%)

Query: 75  QEIFHKMRTEGLTNNAVKMFDALS----KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           QE+  +M   G   N    F+A+     K G + + LQ+  Q++  G  PD++ +  ++E
Sbjct: 305 QELLCQMIDSGCPPNTAT-FNAIMRAHVKAGRSEQVLQVHNQMRQLGCEPDIITYNFLME 363

Query: 131 AYASAGQGK--EALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNA--KILGDAQKYL- 185
            +   GQ     A+++  RM+A G  P+ +T+  ++K +    + NA  K+    Q+   
Sbjct: 364 THCGKGQSNLDAAMKMLTRMIAKGCIPDCHTFNPMLKLVLVLGNVNAARKLYERMQELQC 423

Query: 186 -------------------MEMV--------GKGMRPNAGTYTAVFEAFVRAQKVDEARG 218
                              M+MV         +G+ PN  TY A+ EAF        A  
Sbjct: 424 KPNVVTYNLLMRLFNLEKSMDMVLRIKRDMDAQGVEPNVNTYAALIEAFCGRGNWKRAHM 483

Query: 219 LLQQMKAKGFVPDEKAVKE---ALIDKRGQ 245
            L++M  +  +   K V +   AL+ K GQ
Sbjct: 484 TLREMVEEKALKPTKPVYDMVLALLRKAGQ 513



 Score = 46.2 bits (108), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 6/130 (4%)

Query: 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
           G  + A +L+ ++++    P+VV +  ++  +         LR+   M A GV PN  TY
Sbjct: 406 GNVNAARKLYERMQELQCKPNVVTYNLLMRLFNLEKSMDMVLRIKRDMDAQGVEPNVNTY 465

Query: 161 AVLIKGLAAAADGNAKILGDAQKYLMEMV-GKGMRPNAGTYTAVFEAFVRAQKVDEARGL 219
           A LI+  A    GN K    A   L EMV  K ++P    Y  V     +A ++     L
Sbjct: 466 AALIE--AFCGRGNWK---RAHMTLREMVEEKALKPTKPVYDMVLALLRKAGQLRRHEEL 520

Query: 220 LQQMKAKGFV 229
           ++ M  +GF+
Sbjct: 521 VEMMVDRGFI 530


>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
 gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 79/157 (50%), Gaps = 5/157 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   K+G   EA  +   + + G  P+V+ + +++  Y+   +  EA ++F  M+  G
Sbjct: 307 LIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKLFDVMITRG 366

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+ ++Y++LI G         K + +A++   EM+ +G+ PN  +YT +  AF +  K
Sbjct: 367 CKPDVFSYSILINGYCMV-----KRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGK 421

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRG 249
           + EAR L + M   G++PD       L     QG+ G
Sbjct: 422 LREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLG 458



 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 80/161 (49%), Gaps = 8/161 (4%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +++F++M  +GLT N V    +  A  + G   EA +LF  +   G++PD+  ++ ++E 
Sbjct: 391 KQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEG 450

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +   G   +A R+F  M  + + PN   Y +LI  +  + +     L  A+K   E+   
Sbjct: 451 FCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGN-----LNHARKLFSELFVH 505

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           G++P+   YT +     +   +DEA    ++M+  G  P+E
Sbjct: 506 GLQPDVQIYTTIINGLCKEGLLDEALEAFRKMEEDGCPPNE 546



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 73/139 (52%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D+L KD L +EAL +F+ +K KG  P VV++T++I+   S  + KEA  +   M +  
Sbjct: 237 LIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLN 296

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+  T+++LI       +GN     +AQ  L  M   G+ PN  TY ++   +    +
Sbjct: 297 IMPDIVTFSLLID--IFCKEGNVL---EAQGVLKTMTEMGVEPNVITYNSLMHGYSLQME 351

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V EAR L   M  +G  PD
Sbjct: 352 VVEARKLFDVMITRGCKPD 370



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 76/152 (50%), Gaps = 13/152 (8%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA QLF ++  +G  P+ V++T +I A+   G+ +EA  +F  M  +G  P+  TY+VL+
Sbjct: 389 EAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLL 448

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           +G           LG A +    M G  ++PN   YT + ++  ++  ++ AR L  ++ 
Sbjct: 449 EGFCKQG-----YLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELF 503

Query: 225 AKGFVPDEKA--------VKEALIDKRGQGFR 248
             G  PD +          KE L+D+  + FR
Sbjct: 504 VHGLQPDVQIYTTIINGLCKEGLLDEALEAFR 535



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 73/159 (45%), Gaps = 18/159 (11%)

Query: 80  KMRTEGLTNNAVKMFDALSKDGLTHEA---LQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           +M   GL+ N   +   ++   L         + A++   G  P ++  T +I     AG
Sbjct: 116 QMELAGLSPNTCTLNILINCFCLMQHVDLGFSVLAKVIKLGLQPTIITFTTLINGLCKAG 175

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLA-----AAADGNAKILGDAQKYLMEMVGK 191
           +  +AL +F  M+A G  P+ YTY  +I GL      AAA G  K +G+           
Sbjct: 176 EFAQALELFDDMVARGCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEV---------- 225

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           G +P+  TY+ + ++  + + V+EA  +   MKAKG  P
Sbjct: 226 GCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISP 264



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F  M   G   +      + + L K G T  A  L  ++ + G  PDVV ++ +I++ 
Sbjct: 182 ELFDDMVARGCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSL 241

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
                  EAL +F  M A G++P   +Y  LI+GL + +        +A   L EM    
Sbjct: 242 CKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWK-----EASAMLNEMTSLN 296

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + P+  T++ + + F +   V EA+G+L+ M   G  P+
Sbjct: 297 IMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPN 335



 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 63/139 (45%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K G   +AL+LF  +  +G  PDV  +T +I      G+   A  +  +M   G
Sbjct: 167 LINGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVG 226

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  TY+ LI  L        +++ +A      M  KG+ P   +YT++ +      +
Sbjct: 227 CQPDVVTYSTLIDSLC-----KDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSR 281

Query: 213 VDEARGLLQQMKAKGFVPD 231
             EA  +L +M +   +PD
Sbjct: 282 WKEASAMLNEMTSLNIMPD 300



 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 59/126 (46%), Gaps = 8/126 (6%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F  M+   L  N V    + D++ K G  + A +LF+++   G  PDV  +T +I    
Sbjct: 463 LFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTTIINGLC 522

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G   EAL  F +M   G  PN ++Y V+I+G     D +      A + + EM  KG 
Sbjct: 523 KEGLLDEALEAFRKMEEDGCPPNEFSYNVIIRGFLQHKDESR-----AVQLIGEMRDKGF 577

Query: 194 RPNAGT 199
             + GT
Sbjct: 578 VADEGT 583


>gi|297737746|emb|CBI26947.3| unnamed protein product [Vitis vinifera]
          Length = 1078

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 70/138 (50%), Gaps = 5/138 (3%)

Query: 95  DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           D L K G   EA +L  ++   G +PD V +T++I A+   G+ ++   +F  ML+ G+ 
Sbjct: 522 DGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLT 581

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
           P+  TY VLI G A         L  A  Y  EM  KG+ PN  TY ++     + +++D
Sbjct: 582 PSVVTYTVLIHGHAGKGR-----LERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMD 636

Query: 215 EARGLLQQMKAKGFVPDE 232
           +A     +M  KG  P++
Sbjct: 637 QAYNFFAEMVEKGIFPNK 654



 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 88/198 (44%), Gaps = 11/198 (5%)

Query: 53  LPPPYDPFKKVVD--EEPTDPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEAL 107
            PP    +  VVD   +  +     E+  KM ++G+  + V    +  A  ++G   +  
Sbjct: 510 FPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGR 569

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
           ++F ++  KG  P VV +T +I  +A  G+ + A   F  M   G+ PN  TY  LI GL
Sbjct: 570 EIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGL 629

Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
                   + +  A  +  EMV KG+ PN  +YT +           EA  L +QM  +G
Sbjct: 630 C-----KVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRG 684

Query: 228 FVPDEKAVKEALIDKRGQ 245
             PD      AL+ + G+
Sbjct: 685 VQPD-SCTHSALLKQLGK 701



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 82/169 (48%), Gaps = 10/169 (5%)

Query: 55  PPYDPFKKVVDE--EPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQL 109
           P Y  +  ++    E    R  +EIF++M ++GLT + V    +    +  G    A   
Sbjct: 547 PDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIY 606

Query: 110 FAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169
           F+++++KG +P+V+ + ++I       +  +A   F  M+  G+ PN Y+Y +LI     
Sbjct: 607 FSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILIN---- 662

Query: 170 AADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218
             + N     +A     +M+ +G++P++ T++A+ +   +  K+    G
Sbjct: 663 -ENCNMGNWQEALSLYKQMLDRGVQPDSCTHSALLKQLGKDCKLQAVHG 710



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 86/202 (42%), Gaps = 25/202 (12%)

Query: 50  KSKLPPPYDPFKKVVDEEPT-DPRNLQEIFHKMRTEGLTNNAVKMF-------------- 94
           KS +      F K++    + D +N   I   +R + L + AV+++              
Sbjct: 177 KSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVT 236

Query: 95  -----DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRML 149
                D+  K G   + L L ++++ +G  P+ V +  +I   +  G+ ++A  +   ML
Sbjct: 237 YNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEML 296

Query: 150 ASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
            +G+  +AYTY  LI G       N  +L +A     EMV KG  P   TY +      +
Sbjct: 297 KTGLKVSAYTYNPLIYGYF-----NKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCK 351

Query: 210 AQKVDEARGLLQQMKAKGFVPD 231
             ++ +A   L  M A   +PD
Sbjct: 352 LGRMSDAMQQLSDMLANNLLPD 373



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 64/142 (45%), Gaps = 11/142 (7%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L + G    A QL  ++ ++G  PD+V +T ++      G    A   F  ML  G
Sbjct: 415 LLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEG 474

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM---EMVGKGMRPNAGTYTAVFEAFVR 209
           +  ++Y YA  I G           LGD  +      EM+ KG  P+   Y  V +   +
Sbjct: 475 LELDSYAYATRIVGELK--------LGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCK 526

Query: 210 AQKVDEARGLLQQMKAKGFVPD 231
              ++EA  LLQ+M + G +PD
Sbjct: 527 LGNLEEASELLQKMVSDGVIPD 548



 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 77/161 (47%), Gaps = 10/161 (6%)

Query: 75  QEIFHKMRTEGLTNN----AVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           QE F +M  EGL  +    A ++   L K G T  A  L  ++  KG  PD++ +  V++
Sbjct: 464 QEFFDEMLHEGLELDSYAYATRIVGEL-KLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVD 522

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
                G  +EA  +  +M++ GV P+  TY  +I   A   +G    L   ++   EM+ 
Sbjct: 523 GLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIH--AHLENGR---LRKGREIFYEMLS 577

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           KG+ P+  TYT +        +++ A     +M+ KG +P+
Sbjct: 578 KGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPN 618



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 5/139 (3%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K G   +A+Q  + +     +PDVV++  +I  Y   G   +A  +F  + +  + P
Sbjct: 348 GLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFP 407

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
              TY  L+ GL    +     L  AQ+  +EM+ +G+ P+  TYT +     +   +  
Sbjct: 408 TIVTYNTLLDGLCRQGE-----LEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSM 462

Query: 216 ARGLLQQMKAKGFVPDEKA 234
           A+    +M  +G   D  A
Sbjct: 463 AQEFFDEMLHEGLELDSYA 481



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 61/127 (48%), Gaps = 5/127 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +A  LF +++     P +V +  +++     G+ + A ++ + M+  G+AP+  TY +L+
Sbjct: 392 KAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILV 451

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            G           L  AQ++  EM+ +G+  ++  Y       ++      A  L ++M 
Sbjct: 452 NGSCKMGS-----LSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEML 506

Query: 225 AKGFVPD 231
           AKGF PD
Sbjct: 507 AKGFPPD 513



 Score = 42.7 bits (99), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 58/146 (39%), Gaps = 15/146 (10%)

Query: 90  AVKMFDAL----SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVF 145
           +VK+ D L    SK  +  + L +F ++      PDV     ++          +A+ V+
Sbjct: 163 SVKILDLLIWVYSKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVY 222

Query: 146 MRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQK---YLMEMVGKGMRPNAGTYTA 202
             M   G+ P   TY  L+              G  Q+    L EM  +G  PN  TY  
Sbjct: 223 RTMGEFGIKPTIVTYNTLLDSYCKG--------GKVQQGLDLLSEMQRRGCAPNDVTYNV 274

Query: 203 VFEAFVRAQKVDEARGLLQQMKAKGF 228
           +     +  + ++A+GL+ +M   G 
Sbjct: 275 LINGLSKKGEFEQAKGLIGEMLKTGL 300


>gi|296081511|emb|CBI20034.3| unnamed protein product [Vitis vinifera]
          Length = 596

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 73/136 (53%), Gaps = 6/136 (4%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA + + ++ DKG  PD++AH  ++E      +  +A+++F  M A G +PN  TY +LI
Sbjct: 345 EAGRTWNEMIDKGFKPDIIAHHTMLEGLLKCKKKSDAIKLFEVMKAKGPSPNVRTYTILI 404

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           + L          + +A +Y  EMV  G +P+A  YT +   F   +K+D+   LL++MK
Sbjct: 405 RDLCKQMK-----MQEAVEYFDEMVDSGCQPDAAVYTCLITGFGNQKKMDKVYALLKEMK 459

Query: 225 AKGFVPDEKAVKEALI 240
            KG  P +     ALI
Sbjct: 460 EKG-CPADGRTYNALI 474



 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 5/135 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M + L K     +A++LF  +K KG  P+V  +T +I       + +EA+  F  M+ SG
Sbjct: 368 MLEGLLKCKKKSDAIKLFEVMKAKGPSPNVRTYTILIRDLCKQMKMQEAVEYFDEMVDSG 427

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+A  Y  LI G      GN K +      L EM  KG   +  TY A+ +     Q 
Sbjct: 428 CQPDAAVYTCLITGF-----GNQKKMDKVYALLKEMKEKGCPADGRTYNALIKLMTNRQM 482

Query: 213 VDEARGLLQQMKAKG 227
            D+A  + ++M   G
Sbjct: 483 PDDAVRIYKKMIQNG 497



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 6/106 (5%)

Query: 126 TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185
             +++    A  GKEA  +F + L     PN  TY VL+ G         K L +A +  
Sbjct: 297 NCLLDNLGRAKLGKEAQALFEK-LEDRFTPNLRTYTVLLNGWC-----RIKNLVEAGRTW 350

Query: 186 MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            EM+ KG +P+   +  + E  ++ +K  +A  L + MKAKG  P+
Sbjct: 351 NEMIDKGFKPDIIAHHTMLEGLLKCKKKSDAIKLFEVMKAKGPSPN 396



 Score = 42.0 bits (97), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 8/119 (6%)

Query: 109 LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
           L  ++K+KG   D   + A+I+   +     +A+R++ +M+ +G+    +TY +++K   
Sbjct: 454 LLKEMKEKGCPADGRTYNALIKLMTNRQMPDDAVRIYKKMIQNGIQSTLHTYNMMMKSYF 513

Query: 169 AAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
              +     +G A     EM+ KGM+     Y      F RA K D    L ++MK +G
Sbjct: 514 YTRNYE---MGCA-----EMIEKGMKAPQLDYNKFAADFSRAGKPDILEELARKMKFEG 564


>gi|255559961|ref|XP_002520999.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539836|gb|EEF41416.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 628

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 72/134 (53%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D+L KDGL   A + F ++K+KG  P+VV +T+++    SA + +EA R+F+ M+  G
Sbjct: 259 IIDSLCKDGLVERAKEFFVEMKEKGIFPNVVTYTSLLHGLCSASEWEEAKRLFIEMVDHG 318

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+  T++VLI  L     G  K   +A      MV + + P+  TY  + E +  A  
Sbjct: 319 LLPDVVTFSVLIGALCKV--GKVK---EASGLFDLMVQRYVEPSTRTYNILIEGYCLAGM 373

Query: 213 VDEARGLLQQMKAK 226
           VDE + +   M  K
Sbjct: 374 VDEGKKIFLSMVNK 387



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 83/187 (44%), Gaps = 30/187 (16%)

Query: 93  MFDALSKDGLTHEALQLF-AQIKDKGHM-----PDVVAHTAVIEAYASAGQGKEALRVFM 146
           +   L + G T  AL+L  A I           P VV+++ +I++    G  + A   F+
Sbjct: 218 LISGLCRTGNTCNALKLHEAMINGNSDFGINCKPTVVSYSCIIDSLCKDGLVERAKEFFV 277

Query: 147 RMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEA 206
            M   G+ PN  TY  L+ GL +A++       +A++  +EMV  G+ P+  T++ +  A
Sbjct: 278 EMKEKGIFPNVVTYTSLLHGLCSASEWE-----EAKRLFIEMVDHGLLPDVVTFSVLIGA 332

Query: 207 FVRAQKVDEARGLLQQMKAK-------------------GFVPDEKAVKEALIDKRGQGF 247
             +  KV EA GL   M  +                   G V + K +  ++++KR Q  
Sbjct: 333 LCKVGKVKEASGLFDLMVQRYVEPSTRTYNILIEGYCLAGMVDEGKKIFLSMVNKRCQHD 392

Query: 248 RGVINIL 254
            G  +IL
Sbjct: 393 AGSYSIL 399



 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 78/191 (40%), Gaps = 39/191 (20%)

Query: 80  KMRTEGLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           +M + GL  N + +    + L       E   +F  I  KG+ P+    T +++     G
Sbjct: 132 RMNSIGLLKNFISLNILLNCLCSVKRVFEGFVVFGMILRKGYRPNTRTFTNLVKGLCLEG 191

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLA-------------AAADGNAK------- 176
           +  EA+RVF  M      P+A T  VLI GL              A  +GN+        
Sbjct: 192 KIGEAVRVFKIMGVFDCRPSAITCGVLISGLCRTGNTCNALKLHEAMINGNSDFGINCKP 251

Query: 177 ----------------ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
                           ++  A+++ +EM  KG+ PN  TYT++      A + +EA+ L 
Sbjct: 252 TVVSYSCIIDSLCKDGLVERAKEFFVEMKEKGIFPNVVTYTSLLHGLCSASEWEEAKRLF 311

Query: 221 QQMKAKGFVPD 231
            +M   G +PD
Sbjct: 312 IEMVDHGLLPD 322



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 73/149 (48%), Gaps = 10/149 (6%)

Query: 76  EIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQ----LFAQIKDKGHMPDVVAHTAVIEA 131
           ++F+ +      +N V +F++L       E L+    LF ++ ++   PDVV +T +I  
Sbjct: 477 DVFYGLENCKFASN-VAIFNSLINGMCRSEKLEIAWELFNRLCNEALQPDVVTYTIMIYG 535

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               GQ ++A  +F+ M   G APN  T+  L++GL   ++   KI+    + L +M  +
Sbjct: 536 LCKVGQPQKAYDLFLEMEEKGCAPNVVTFNTLMRGLCLNSE-RPKIV----ELLHKMAAR 590

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
            + P+A T   V +  ++ +   E   LL
Sbjct: 591 KLSPDASTLLIVMDILLKDENYHECLNLL 619



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 78/182 (42%), Gaps = 13/182 (7%)

Query: 78  FHKMRTEGLTNNAVKMF-DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           F  M  + ++ +   ++ D L K+G   EAL +F  +++     +V    ++I     + 
Sbjct: 446 FQDMVLDSISYSIYNVYLDGLCKNGCVSEALDVFYGLENCKFASNVAIFNSLINGMCRSE 505

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQK---YLMEMVGKGM 193
           + + A  +F R+    + P+  TY ++I GL          +G  QK     +EM  KG 
Sbjct: 506 KLEIAWELFNRLCNEALQPDVVTYTIMIYGLCK--------VGQPQKAYDLFLEMEEKGC 557

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL-IDKRGQGFRGVIN 252
            PN  T+  +        +  +   LL +M A+   PD   +   + I  + + +   +N
Sbjct: 558 APNVVTFNTLMRGLCLNSERPKIVELLHKMAARKLSPDASTLLIVMDILLKDENYHECLN 617

Query: 253 IL 254
           +L
Sbjct: 618 LL 619



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 71/160 (44%), Gaps = 18/160 (11%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +F +M   GL  + V    +  AL K G   EA  LF  +  +   P    +  +IE 
Sbjct: 308 KRLFIEMVDHGLLPDVVTFSVLIGALCKVGKVKEASGLFDLMVQRYVEPSTRTYNILIEG 367

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y  AG   E  ++F+ M+      +A +Y++L+K     ++ +      A     EM+ +
Sbjct: 368 YCLAGMVDEGKKIFLSMVNKRCQHDAGSYSILMKAYCKDSEVHG-----AMILYREMMDR 422

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G++P   TY+          KV +AR L  +++ +  V D
Sbjct: 423 GIQPTVITYS----------KVGDARKLFGEIQFQDMVLD 452


>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
 gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
          Length = 717

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 83/160 (51%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +++F +M  EGL  + V    +     K G  HE+L +F+++  +G +PDVV  T++I A
Sbjct: 243 RKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHA 302

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              AG  ++A+ +  +M   G+  N  T+  LI G           L DA   + EM   
Sbjct: 303 TCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKG-----FLDDALLAVEEMRKC 357

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G++P+   Y A+   + +  ++D AR L+++M+AK   PD
Sbjct: 358 GIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPD 397



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 8/155 (5%)

Query: 80  KMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           +MR  G+  + V    + +   K G    A +L  +++ K   PDVV ++ +I  Y   G
Sbjct: 353 EMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVG 412

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196
               A ++  +ML  GV P+A TY+ LI+GL        K L DA +    M+  G++P+
Sbjct: 413 NLDSAFQLNQKMLKKGVLPDAITYSSLIRGLC-----EEKRLNDACELFENMLQLGVQPD 467

Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             TYT + +   +   V++A  L  +M  KG +PD
Sbjct: 468 EFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPD 502



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 8/156 (5%)

Query: 80  KMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           +MR  GL  N V    + D   K G   +AL    +++  G  P VV + A+I  Y   G
Sbjct: 318 QMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLG 377

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196
           +   A  +   M A  V P+  TY+ +I G     +     L  A +   +M+ KG+ P+
Sbjct: 378 RMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGN-----LDSAFQLNQKMLKKGVLPD 432

Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           A TY+++       +++++A  L + M   G  PDE
Sbjct: 433 AITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDE 468



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 82/165 (49%), Gaps = 10/165 (6%)

Query: 81  MRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM-PDVVAHTAVIEAYASAG 136
           MR  G   NAV    +  A  + G    A ++ + ++++G+  P++V   +++     AG
Sbjct: 178 MRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAG 237

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196
           + + A +VF  M+  G+AP+  +Y  L+ G           L ++     EM  +G+ P+
Sbjct: 238 RMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVG-----CLHESLAVFSEMTQRGLVPD 292

Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
             T+T++  A  +A  +++A  L+ QM+ +G   +E     ALID
Sbjct: 293 VVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFT-ALID 336



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 88/189 (46%), Gaps = 12/189 (6%)

Query: 73  NLQEIFH---KMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           NL   F    KM  +G+  +A+    +   L ++   ++A +LF  +   G  PD   +T
Sbjct: 413 NLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYT 472

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
            +I+ +   G  ++AL +   M+  GV P+  TY+VLI GL+ +A        +A + L 
Sbjct: 473 TLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTK-----EAHRLLF 527

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
           ++  +   P+   Y A+     +A+       LL+    KG + +   V ++++D+  + 
Sbjct: 528 KLYHEDPVPDNIKYDALMLCCSKAE-FKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKL 586

Query: 247 FRGVINILF 255
              V +IL 
Sbjct: 587 DGSVYSILI 595



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 73/174 (41%), Gaps = 34/174 (19%)

Query: 89  NAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRM 148
           NAV +  ALS   L   A +  + +   G  P+V  +  ++ A  + G+ +EA+ V   M
Sbjct: 122 NAVLL--ALSDASLP-SARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDM 178

Query: 149 LASGVAPNAYTYAVLIKGLAAAA--------------DGNAK-----------------I 177
             +G APNA TY  L+     A               +GNAK                  
Sbjct: 179 RGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGR 238

Query: 178 LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +  A+K   EMV +G+ P+  +Y  +   + +   + E+  +  +M  +G VPD
Sbjct: 239 MEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPD 292



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 73/172 (42%), Gaps = 13/172 (7%)

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F  M   G+  +      + D   K+G   +AL L  ++  KG +PDVV ++ +I   
Sbjct: 454 ELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGL 513

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLI--------KGLAAAADGNAK--ILGDAQ 182
           + + + KEA R+  ++      P+   Y  L+        K + A   G     ++ +A 
Sbjct: 514 SKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEAD 573

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
           K    M+ +  + +   Y+ +     R   V +A    +QM   GF P+  +
Sbjct: 574 KVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTS 625



 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 53/135 (39%), Gaps = 39/135 (28%)

Query: 127 AVIEAYASA----------------------------------GQGKEALRVFMRMLASG 152
           A+I +YAS                                        A R    ML  G
Sbjct: 88  ALIRSYASLPRPSLAAAALAFAASAGYAPSVPAYNAVLLALSDASLPSARRFLSSMLRHG 147

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           VAPN YTY +L++ L A        L +A   + +M G G  PNA TY  +  AF RA +
Sbjct: 148 VAPNVYTYNILVRALCARGR-----LEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGE 202

Query: 213 VDEARGLLQQMKAKG 227
           +D A  ++  M+ +G
Sbjct: 203 LDGAERVVSLMREEG 217



 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 39/79 (49%)

Query: 89  NAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRM 148
           + V +       GL  EA +++  + D+    D   ++ +I  +   G  ++AL    +M
Sbjct: 555 SVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQM 614

Query: 149 LASGVAPNAYTYAVLIKGL 167
           L SG +PN+ +   L++GL
Sbjct: 615 LRSGFSPNSTSTISLVRGL 633


>gi|410109939|gb|AFV61049.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rehmannii]
          Length = 420

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/237 (27%), Positives = 112/237 (47%), Gaps = 15/237 (6%)

Query: 2   AATAILRWLLHSPSPKRS-LRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPF 60
           +A A+   +L +   +RS + + +  + A L+      + +  +  +  + KL  P+D  
Sbjct: 42  SAXAVFAAILETKGTQRSDIYVFSGLITAYLESGFLRDAIECYR--LTREHKLWVPFDTC 99

Query: 61  KKVVDEEPTDPRNLQEI--FHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIK 114
           +KV+ E     R  + +  F++   E     ++  F+ L     KDG    A  +F  I 
Sbjct: 100 RKVL-EHLMKLRYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAPLVFDAIT 158

Query: 115 DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174
             G  P VV++  ++  Y   G   E  R+   M ASGV P+ YTY+VLI GL   +   
Sbjct: 159 KWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMRASGVQPDVYTYSVLINGLCKES--- 215

Query: 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              + DA +   EM+ KG+ PN  T+T + +   +  +VD A  + +QM ++  +PD
Sbjct: 216 --XMDDANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQXLLPD 270



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 86/201 (42%), Gaps = 35/201 (17%)

Query: 63  VVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM 119
           +  E   D  N  E+F +M  +GL  N V    + D   K+G    A++++ Q+  +  +
Sbjct: 211 LCKESXMDDAN--ELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQXLL 268

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK--- 176
           PD++ +  ++      G   +A  +   M   G+ P+ +TY  LI G     D +A    
Sbjct: 269 PDJITYNTLVYGLCKKGDLNQAHGLIDEMXXKGLKPDKFTYTTLIDGCCKEGDLDAAFEH 328

Query: 177 -------------------ILG--------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
                              I G        DA+K L EM+  G++P+ GTYT +   F +
Sbjct: 329 RKRMIQENIRLDDVAYTALISGLCQEGRSXDAEKMLREMLSVGLKPDTGTYTMIINEFCK 388

Query: 210 AQKVDEARGLLQQMKAKGFVP 230
              V +   LL++M+  G VP
Sbjct: 389 KGDVWKGSKLLKEMQRNGHVP 409


>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
 gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
          Length = 603

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 107/224 (47%), Gaps = 18/224 (8%)

Query: 14  PSPKRSLRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKKVVDEEPTDPRN 73
           PSP       N  ++A+ +R +   +    KK +       P    +  V+D      R 
Sbjct: 78  PSPV----TYNVIIDASCKRGMLEEACDLIKKMIEDGH--VPDVVTYNTVMDGLCKSGR- 130

Query: 74  LQE---IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           ++E   +F++M   G T N      +   L +     +A Q+F +++ +   PD  ++  
Sbjct: 131 VEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPPDSWSYGI 190

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           +I+  A AG+  EA ++F RML SG+ P+A TY V+I G+       A  L +A +    
Sbjct: 191 LIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCL-----AYTLDEALELFKS 245

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           M  KG RP+  T+  + +A  +  K+DEA  LL++M   G VPD
Sbjct: 246 MRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPD 289



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 71/162 (43%), Gaps = 5/162 (3%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           D R+L E   K + +        +   L K G   EA ++   +   G  PDVV +  ++
Sbjct: 308 DARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLV 367

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
             +  AGQ + A  +   M+A G+APN  TY  L+ GL       A  L +A     +M 
Sbjct: 368 HGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLC-----KANRLPEACGVFAQMK 422

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             G  PN  TYTA+   F  A +VD    L  +M   G  PD
Sbjct: 423 SSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPD 464



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 92/212 (43%), Gaps = 47/212 (22%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+F  M   G   + V    + DA  K G+  EA  L  ++ + GH+PDVV +  V++ 
Sbjct: 65  RELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDG 124

Query: 132 YASAGQGKEAL-----------------------------------RVFMRMLASGVAPN 156
              +G+ +EAL                                   +VF  M A  + P+
Sbjct: 125 LCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPPD 184

Query: 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
           +++Y +LI GLA A       L +A K    M+  G+ P+A TY  V      A  +DEA
Sbjct: 185 SWSYGILIDGLAKAGK-----LNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEA 239

Query: 217 RGLLQQMKAKGFVPDEKAVKEALID---KRGQ 245
             L + M++KG  P  +     LID   KRG+
Sbjct: 240 LELFKSMRSKGCRP-SRFTFNILIDAHCKRGK 270



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 97/216 (44%), Gaps = 13/216 (6%)

Query: 24  NTRVNATLQRSLSSSS--DQPTKKYVNTKSKLPPPYDPFKKVVDEEPTDPRNLQE---IF 78
           N R + T+   L   S  DQ  + +   +++  PP      ++ +       L E   +F
Sbjct: 149 NRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPPDSWSYGILIDGLAKAGKLNEAYKLF 208

Query: 79  HKMRTEGLTNNAVKMFDALSKDGLTH---EALQLFAQIKDKGHMPDVVAHTAVIEAYASA 135
            +M   G+T +AV     +    L +   EAL+LF  ++ KG  P       +I+A+   
Sbjct: 209 RRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKR 268

Query: 136 GQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP 195
           G+  EA R+  RM   G  P+  TY+ LI GL + A      + DA+  L +MV +  +P
Sbjct: 269 GKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIAR-----VDDARHLLEDMVKRQCKP 323

Query: 196 NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              T   +     +A ++ EAR +L  M + G  PD
Sbjct: 324 TVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPD 359



 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 13/163 (7%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L+K G  ++A  LF ++   G  P  VA+T++I     A    +A  +F  M   G
Sbjct: 16  LIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRG 75

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  TY V+I      A     +L +A   + +M+  G  P+  TY  V +   ++ +
Sbjct: 76  CPPSPVTYNVIID-----ASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSGR 130

Query: 213 VDEARGLLQQMKAKGFVPDEKA--------VKEALIDKRGQGF 247
           V+EA  L  +M+  G  P+ ++         +++ ID+  Q F
Sbjct: 131 VEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVF 173



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 5/112 (4%)

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
           PD  ++  +I+  A AG+  +A  +F ++L SGV P+   Y  LI GL  A         
Sbjct: 8   PDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANS-----FD 62

Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           DA++   +M  +G  P+  TY  + +A  +   ++EA  L+++M   G VPD
Sbjct: 63  DARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPD 114



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 84/183 (45%), Gaps = 20/183 (10%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+   M   GL  N V    +   L K     EA  +FAQ+K  G  P++  +TA+I  
Sbjct: 380 RELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILG 439

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           + SAGQ    L++F  M+ +G++P+   Y  L   L  +        G + + L E++ +
Sbjct: 440 FCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKS--------GRSARAL-EILRE 490

Query: 192 G---MRPNAG---TYTAVFEAFVRAQKVDEARGLLQQMKAKGFV--PDEKAVKEALIDKR 243
           G   +R  A     Y    +  + A K++ A G ++ M   G +  P+  A   A + K 
Sbjct: 491 GRESLRSEAWGDEVYRFAVDGLLDAGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKS 550

Query: 244 GQG 246
           GQG
Sbjct: 551 GQG 553


>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
 gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
          Length = 457

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 79/165 (47%), Gaps = 8/165 (4%)

Query: 74  LQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           +Q +F  M  +G   N      + D   K G   EA +LF +++  G  PDVV++  ++ 
Sbjct: 211 VQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMR 270

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
              S G+  EA R+   M+ SGV P+  +Y +LI G + +       L  A K   E+  
Sbjct: 271 GMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSG-----ALDHAIKLFYEIPK 325

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAV 235
            G+ P+A +Y+ + +   RA KV  A  + + M A G  PD   V
Sbjct: 326 SGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVV 370



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +F  M  +G + N      +   L +     EA +L  ++ D GH P+VV + +++  
Sbjct: 72  RSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSG 131

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G+ KEA+ +F RM+  G  P+   Y VLI G +   D     +G+A +   EM+ K
Sbjct: 132 LCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGD-----MGEAYRLFEEMLEK 186

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G  P   TY ++   F R  +    + L + M  +G VP+
Sbjct: 187 GCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPN 226



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+ ++M   G   N V    +   L K G   EA+ LF+++  +G  PD V +  +I+ +
Sbjct: 108 ELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGF 167

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           +  G   EA R+F  ML  G  P  +TY  L+ G +   +      G  Q    +M+ +G
Sbjct: 168 SKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGE-----FGRVQSLFKDMLRQG 222

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             PN  T+  + + F +   + EA  L  +M++ G  PD
Sbjct: 223 CVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPD 261



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 71/149 (47%), Gaps = 6/149 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L+K G        +  +   G +P+   +  ++ +   A + +EA  VF  M A G
Sbjct: 23  LLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQG 82

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            +PN ++Y++LI GL        + + +A + L EM+  G +PN  TY ++     +  K
Sbjct: 83  CSPNVFSYSILIAGLC-----RGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGK 137

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALID 241
           + EA  L  +M  +G  PD   V   LID
Sbjct: 138 LKEAVDLFSRMVYRGCPPD-GVVYNVLID 165



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 8/172 (4%)

Query: 71  PRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P   Q +  +M   G+  + V    + D  SK G    A++LF +I   G  PD  +++ 
Sbjct: 278 PHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYST 337

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           +I+    AG+   A  VF  M+A+G AP+A     L+ GL        + L ++ +    
Sbjct: 338 IIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLC-----RGERLTESCELFQA 392

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
           MV     P    Y  +     +A++ D+   +  ++  +GF PD +  K  L
Sbjct: 393 MVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTERGFSPDVEISKVIL 444



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/158 (21%), Positives = 72/158 (45%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M  +G          +    S+ G       LF  +  +G +P++     +++ + 
Sbjct: 179 LFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFC 238

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G   EA R+F+ M + G  P+  +Y  L++G+ +    +     +AQ+ L EM+  G+
Sbjct: 239 KMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPH-----EAQRLLREMIRSGV 293

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            P+  +Y  + + + ++  +D A  L  ++   G  PD
Sbjct: 294 GPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPD 331



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 5/109 (4%)

Query: 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQ 182
           +++  ++E  A +G+       +  ML +G  PN YTY  L++ L       A+   +A+
Sbjct: 18  LSYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLC-----QAQRFEEAR 72

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
                M  +G  PN  +Y+ +     R QKVDEA  LL +M   G  P+
Sbjct: 73  SVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPN 121


>gi|125606474|gb|EAZ45510.1| hypothetical protein OsJ_30168 [Oryza sativa Japonica Group]
          Length = 651

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 87/170 (51%), Gaps = 11/170 (6%)

Query: 77  IFHKMRTEGLTNNA-----VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +F +M   G+ N+      V +  AL KDG   E + +F ++  +G   +   +TA+I++
Sbjct: 361 LFQEMEERGMGNDIPQHAYVLVIGALCKDGKPFEGMAVFERMLKRGCAANAAIYTALIDS 420

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G+ KEA+ +F RM  SG+  ++ TY V++  L          L +A         K
Sbjct: 421 MGKFGREKEAMALFERMKDSGLKLDSVTYGVIVNCLCRFGK-----LDEAVACFRSCQEK 475

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           G+  NA  YT++ + F +A  VD+++ L ++M AKGFVPD       LID
Sbjct: 476 GIAVNAIFYTSLIDGFGKAGMVDQSKELFEEMIAKGFVPDSYCYN-VLID 524



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 75/163 (46%), Gaps = 8/163 (4%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M+  GL  ++V    + + L + G   EA+  F   ++KG   + + +T++I+ + 
Sbjct: 433 LFERMKDSGLKLDSVTYGVIVNCLCRFGKLDEAVACFRSCQEKGIAVNAIFYTSLIDGFG 492

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG   ++  +F  M+A G  P++Y Y VLI GLA +       + DA      M   G 
Sbjct: 493 KAGMVDQSKELFEEMIAKGFVPDSYCYNVLIDGLAKSGR-----MDDACALYKRMEDDGC 547

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK 236
                TYT + +   +  K +EA      M  KG  P   A +
Sbjct: 548 DQTVYTYTILIDGLFKEHKNEEALKFWDAMIDKGITPTAAAFR 590



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 72/158 (45%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
            F   + +G+  NA+    + D   K G+  ++ +LF ++  KG +PD   +  +I+  A
Sbjct: 468 CFRSCQEKGIAVNAIFYTSLIDGFGKAGMVDQSKELFEEMIAKGFVPDSYCYNVLIDGLA 527

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            +G+  +A  ++ RM   G     YTY +LI GL            +A K+   M+ KG+
Sbjct: 528 KSGRMDDACALYKRMEDDGCDQTVYTYTILIDGLFKEHKNE-----EALKFWDAMIDKGI 582

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            P A  +  +      + K   A  +L ++   G +P+
Sbjct: 583 TPTAAAFRTLASGLCLSGKFSRACRILDELAPMGVIPE 620



 Score = 45.8 bits (107), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 3/97 (3%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+F +M  +G   ++     + D L+K G   +A  L+ +++D G    V  +T +I+ 
Sbjct: 501 KELFEEMIAKGFVPDSYCYNVLIDGLAKSGRMDDACALYKRMEDDGCDQTVYTYTILIDG 560

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
                + +EAL+ +  M+  G+ P A  +  L  GL 
Sbjct: 561 LFKEHKNEEALKFWDAMIDKGITPTAAAFRTLASGLC 597



 Score = 42.0 bits (97), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 22/163 (13%)

Query: 85  GLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRV 144
           GL + AV +FDA+S +           Q++     PDVV++  +I+ Y  AG+  +A+  
Sbjct: 281 GLLDTAVNVFDAMSTED----------QVR-----PDVVSYNILIKGYCRAGRAHDAMAR 325

Query: 145 FMRMLASG-VAPNAYTYAVLIKGLAAAADGNAKI-LGDAQKYLMEMVGKGMRPNAGTYTA 202
              M     + P+  TY  L++     ++G   + +G  Q+  ME  G G       Y  
Sbjct: 326 LSEMQEQAKLTPDKVTYLTLMQ--CHYSEGTFPVCIGLFQE--MEERGMGNDIPQHAYVL 381

Query: 203 VFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
           V  A  +  K  E   + ++M  +G   +  A+  ALID  G+
Sbjct: 382 VIGALCKDGKPFEGMAVFERMLKRGCAAN-AAIYTALIDSMGK 423


>gi|255660856|gb|ACU25597.1| pentatricopeptide repeat-containing protein [Bouchea fluminensis]
          Length = 418

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 91/188 (48%), Gaps = 12/188 (6%)

Query: 50  KSKLPPPYDPFKKVVDEEPTDPRNLQEI--FHKMRTEGLTNNAVKMFDAL----SKDGLT 103
           K K+  P+D  +KV+ E     R  + +  F+K   E     ++  F+ L     K+G  
Sbjct: 94  KHKIWVPFDTCRKVL-EHLMKLRYFRLVWGFYKEILECGYPPSLYFFNILMHRFCKEGEM 152

Query: 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
             A  +F  I      P VV+   ++  Y   G   E  R+   M A+GV P+ YTY+VL
Sbjct: 153 RLAQMVFDAITKWSLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHATGVQPDVYTYSVL 212

Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           I GL   +      + +A + L EM+  G+ PN  T+T + +   +  KVD A  + +QM
Sbjct: 213 INGLCKESK-----MDEANEMLNEMLDNGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQM 267

Query: 224 KAKGFVPD 231
            ++GF+PD
Sbjct: 268 LSQGFLPD 275



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 88/203 (43%), Gaps = 39/203 (19%)

Query: 63  VVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM 119
           +  E   D  N  E+ ++M   GL  N V    + D   K+G    A++++ Q+  +G +
Sbjct: 216 LCKESKMDEAN--EMLNEMLDNGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQGFL 273

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKIL- 178
           PD++ +  +I      G   +A  +   M+  G+ P+  TY  LI G  +  +G+ +I  
Sbjct: 274 PDLITYNTLIYGLCRRGDLGQARDLVEEMIMKGLKPDKITYTTLIDG--SCKEGDLEITF 331

Query: 179 -------------------------------GDAQKYLMEMVGKGMRPNAGTYTAVFEAF 207
                                          GDA+K L EM+  G++P+ GTYT +   F
Sbjct: 332 ELRKRMIRENIRLDEVTYTALISGLCREGRAGDAEKMLREMLTVGLKPDNGTYTMIMNEF 391

Query: 208 VRAQKVDEARGLLQQMKAKGFVP 230
            +   V  A  LL++M+  G VP
Sbjct: 392 CKTGDVKTASKLLREMQRNGPVP 414



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 71/140 (50%), Gaps = 5/140 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K+    EA ++  ++ D G +P+ V  T +I+ +   G+   A+ ++ +ML+ G
Sbjct: 212 LINGLCKESKMDEANEMLNEMLDNGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQG 271

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  TY  LI GL    D     LG A+  + EM+ KG++P+  TYT + +   +   
Sbjct: 272 FLPDLITYNTLIYGLCRRGD-----LGQARDLVEEMIMKGLKPDKITYTTLIDGSCKEGD 326

Query: 213 VDEARGLLQQMKAKGFVPDE 232
           ++    L ++M  +    DE
Sbjct: 327 LEITFELRKRMIRENIRLDE 346


>gi|302143409|emb|CBI21970.3| unnamed protein product [Vitis vinifera]
          Length = 375

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 75/139 (53%), Gaps = 8/139 (5%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L  +G   EALQLF ++  +G  PDV+ +  +I       Q  EAL +F  MLA G++P
Sbjct: 89  GLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCKDRQLTEALSLFSDMLAKGISP 148

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVR---AQK 212
           N +TY+ LI GL     G+ K   +A +    M+ + + P+  T+  + +A  +    Q 
Sbjct: 149 NNFTYSSLIHGLCIL--GHWK---EAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMIQI 203

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +D+A GL ++M  +G +PD
Sbjct: 204 MDKAMGLFEEMSQQGLIPD 222



 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 88/184 (47%), Gaps = 10/184 (5%)

Query: 77  IFHKMRTEGLTNNAVKMFDALSKDGLTH---EALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           I  K+  + LT N   + DAL K+G+     +A+ LF ++  +G +PD V +  +I    
Sbjct: 177 IHRKIMPDQLTFNT--LVDALCKEGMIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLC 234

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G+ ++A+ +F  M+  G  P+  TY +L   L      N + L +A   L  + G  +
Sbjct: 235 HVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCK----NHR-LAEAMVLLKVIEGTNL 289

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINI 253
            P+   Y+ V +   RA +++ AR L  ++ +KG  PD +     +     QG     + 
Sbjct: 290 DPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASK 349

Query: 254 LFGK 257
           LFG+
Sbjct: 350 LFGE 353



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 70/167 (41%), Gaps = 11/167 (6%)

Query: 88  NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMR 147
           N  +  F  L++ G    A  +   I   G+ P     T +I      G+  EAL++F +
Sbjct: 49  NILINSFCHLNRLGF---AFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDK 105

Query: 148 MLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAF 207
           M   G  P+  TY  LI GL        + L +A     +M+ KG+ PN  TY+++    
Sbjct: 106 MTGEGFQPDVLTYGTLINGLC-----KDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGL 160

Query: 208 VRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINIL 254
                  EA  L   M  +  +PD+      L+D   +   G+I I+
Sbjct: 161 CILGHWKEAIRLFYAMIHRKIMPDQLTFN-TLVDALCK--EGMIQIM 204



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 8/120 (6%)

Query: 72  RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R+   +FH+M   G   + V    +FD L K+    EA+ L   I+     PD+  ++ V
Sbjct: 240 RDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIV 299

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           ++    AG+ + A  +F ++ + G+ P+  TY ++I GL         +L +A K   EM
Sbjct: 300 MDGMCRAGELEAARDLFSKLSSKGLHPDVRTYTIMINGLCQQG-----LLAEASKLFGEM 354



 Score = 45.8 bits (107), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 5/112 (4%)

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
           P +V  + ++ +          L ++ +M + G+  N YT  +LI         +   LG
Sbjct: 8   PSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNILINSFC-----HLNRLG 62

Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            A   L +++  G +P+  T+T +        K+ EA  L  +M  +GF PD
Sbjct: 63  FAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPD 114


>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
          Length = 552

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 83/160 (51%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +++F +M  EGL  + V    +     K G  HE+L +F+++  +G +PDVV  T++I A
Sbjct: 101 RKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHA 160

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              AG  ++A+ +  +M   G+  N  T+  LI G           L DA   + EM   
Sbjct: 161 TCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKG-----FLDDALLAVEEMRKC 215

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G++P+   Y A+   + +  ++D AR L+++M+AK   PD
Sbjct: 216 GIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPD 255



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 77/156 (49%), Gaps = 8/156 (5%)

Query: 79  HKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASA 135
            +MR  G+  + V    + +   K G    A +L  +++ K   PDVV ++ +I  Y   
Sbjct: 210 EEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKV 269

Query: 136 GQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP 195
           G    A ++  +ML  GV P+A TY+ LI+GL        K L DA +    M+  G++P
Sbjct: 270 GNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLC-----EEKRLNDACELFENMLQLGVQP 324

Query: 196 NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +  TYT + +   +   V++A  L  +M  KG +PD
Sbjct: 325 DEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPD 360



 Score = 70.1 bits (170), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 84/190 (44%), Gaps = 12/190 (6%)

Query: 49  TKSKLPPPYDPFKKVVDEEPTDPRNLQE---IFHKMRTEGLTNNAVK---MFDALSKDGL 102
           T+  L P    F  ++        NL++   +  +MR  GL  N V    + D   K G 
Sbjct: 143 TQRGLVPDVVTFTSLI-HATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGF 201

Query: 103 THEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAV 162
             +AL    +++  G  P VV + A+I  Y   G+   A  +   M A  V P+  TY+ 
Sbjct: 202 LDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYST 261

Query: 163 LIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
           +I G     +     L  A +   +M+ KG+ P+A TY+++       +++++A  L + 
Sbjct: 262 IISGYCKVGN-----LDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFEN 316

Query: 223 MKAKGFVPDE 232
           M   G  PDE
Sbjct: 317 MLQLGVQPDE 326



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 82/165 (49%), Gaps = 10/165 (6%)

Query: 81  MRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM-PDVVAHTAVIEAYASAG 136
           MR  G   NAV    +  A  + G    A ++ + ++++G+  P++V   +++     AG
Sbjct: 36  MRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAG 95

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196
           + + A +VF  M+  G+AP+  +Y  L+ G           L ++     EM  +G+ P+
Sbjct: 96  RMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVG-----CLHESLAVFSEMTQRGLVPD 150

Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
             T+T++  A  +A  +++A  L+ QM+ +G   +E     ALID
Sbjct: 151 VVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFT-ALID 194



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 88/189 (46%), Gaps = 12/189 (6%)

Query: 73  NLQEIFH---KMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           NL   F    KM  +G+  +A+    +   L ++   ++A +LF  +   G  PD   +T
Sbjct: 271 NLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYT 330

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
            +I+ +   G  ++AL +   M+  GV P+  TY+VLI GL+ +A        +A + L 
Sbjct: 331 TLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTK-----EAHRLLF 385

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
           ++  +   P+   Y A+     +A+       LL+    KG + +   V ++++D+  + 
Sbjct: 386 KLYHEDPVPDNIKYDALMLCCSKAE-FKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKL 444

Query: 247 FRGVINILF 255
              V +IL 
Sbjct: 445 DGSVYSILI 453



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 5/80 (6%)

Query: 148 MLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAF 207
           M+  GVAPN YTY +L++ L A        L +A   + +M G G  PNA TY  +  AF
Sbjct: 1   MVRHGVAPNVYTYNILVRALCARGR-----LEEAVGVVGDMRGAGCAPNAVTYNTLVAAF 55

Query: 208 VRAQKVDEARGLLQQMKAKG 227
            RA ++D A  ++  M+ +G
Sbjct: 56  CRAGELDGAERVVSLMREEG 75



 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 61/146 (41%), Gaps = 31/146 (21%)

Query: 117 GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA----- 171
           G  P+V  +  ++ A  + G+ +EA+ V   M  +G APNA TY  L+     A      
Sbjct: 5   GVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGA 64

Query: 172 ---------DGNAK-----------------ILGDAQKYLMEMVGKGMRPNAGTYTAVFE 205
                    +GNAK                  +  A+K   EMV +G+ P+  +Y  +  
Sbjct: 65  ERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLS 124

Query: 206 AFVRAQKVDEARGLLQQMKAKGFVPD 231
            + +   + E+  +  +M  +G VPD
Sbjct: 125 GYCKVGCLHESLAVFSEMTQRGLVPD 150



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 72/169 (42%), Gaps = 13/169 (7%)

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F  M   G+  +      + D   K+G   +AL L  ++  KG +PDVV ++ +I   
Sbjct: 312 ELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGL 371

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLI--------KGLAAAADGNAK--ILGDAQ 182
           + + + KEA R+  ++      P+   Y  L+        K + A   G     ++ +A 
Sbjct: 372 SKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEAD 431

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           K    M+ +  + +   Y+ +     R   V +A    +QM   GF P+
Sbjct: 432 KVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPN 480



 Score = 38.9 bits (89), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 39/79 (49%)

Query: 89  NAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRM 148
           + V +       GL  EA +++  + D+    D   ++ +I  +   G  ++AL    +M
Sbjct: 413 SVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQM 472

Query: 149 LASGVAPNAYTYAVLIKGL 167
           L SG +PN+ +   L++GL
Sbjct: 473 LRSGFSPNSTSTISLVRGL 491


>gi|356544378|ref|XP_003540629.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Glycine max]
          Length = 903

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 45/157 (28%), Positives = 78/157 (49%), Gaps = 8/157 (5%)

Query: 78  FHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F +M  +G+         + +   K G    A  LF ++ +KG  P     T++I  Y  
Sbjct: 423 FDRMIQDGIGETVYAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLISGYCK 482

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
             Q ++A +++ +M+ +G+ PN YT+  LI GL +        + +A +   E+V + ++
Sbjct: 483 DLQVQKAFKLYNKMIDNGITPNVYTFTALISGLCSTNK-----MAEASELFDELVERKIK 537

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           P   TY  + E + R  K+D+A  LL+ M  KG VPD
Sbjct: 538 PTEVTYNVLIEGYCRDGKIDKAFELLEDMHQKGLVPD 574



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 76/166 (45%), Gaps = 11/166 (6%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D +   ++   M  +GL  + V    M D  SK+G   +A + +  +  +   P+VV +T
Sbjct: 660 DRKTFFDLLKDMHDQGLRPDNVIYTSMIDTYSKEGSFKKAFECWDLMVTEECFPNVVTYT 719

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK-ILGDAQKYL 185
           A++     AG+   A  +F RM A+ V PN+ TY   +  L    +GN K  +G     L
Sbjct: 720 ALMNGLCKAGEMDRAGLLFKRMQAANVPPNSITYGCFLDNL--TKEGNMKEAIG-----L 772

Query: 186 MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              + KG+  N  T+  +   F +  +  EA  +L +M   G  PD
Sbjct: 773 HHAMLKGLLANTVTHNIIIRGFCKLGRFHEATKVLSEMTENGIFPD 818



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 77/164 (46%), Gaps = 9/164 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M+   +  N++      D L+K+G   EA+ L   +  KG + + V H  +I  + 
Sbjct: 737 LFKRMQAANVPPNSITYGCFLDNLTKEGNMKEAIGLHHAML-KGLLANTVTHNIIIRGFC 795

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G+  EA +V   M  +G+ P+  TY+ LI     + +     +G + K    M+ +G+
Sbjct: 796 KLGRFHEATKVLSEMTENGIFPDCVTYSTLIYEYCRSGN-----VGASVKLWDTMLNRGL 850

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKE 237
            P+   Y  +        ++D+A  L   M  +G +PD K +++
Sbjct: 851 EPDLVAYNLLIYGCCVNGELDKAFELRDDMLRRGIIPDNKYLQK 894



 Score = 56.6 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 43/192 (22%), Positives = 80/192 (41%), Gaps = 24/192 (12%)

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++++KM   G+T N      +   L       EA +LF ++ ++   P  V +  +IE Y
Sbjct: 491 KLYNKMIDNGITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEVTYNVLIEGY 550

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+  +A  +   M   G+ P+ YTY  LI GL +        +  A+ ++ ++  + 
Sbjct: 551 CRDGKIDKAFELLEDMHQKGLVPDTYTYRPLISGLCSTGR-----VSKAKDFIDDLHKQN 605

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF----------------VPDEKAVK 236
           ++ N   Y+A+   + +  ++ EA     +M  +G                  PD K   
Sbjct: 606 VKLNEMCYSALLHGYCQEGRLMEALSASCEMIQRGINMDLVCHAVLIDGALKQPDRKTFF 665

Query: 237 EALIDKRGQGFR 248
           + L D   QG R
Sbjct: 666 DLLKDMHDQGLR 677



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/169 (21%), Positives = 68/169 (40%), Gaps = 30/169 (17%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K G   +A +L  ++   G +P++  + A+I +    G   +A  ++  M    
Sbjct: 336 LVDGLRKQGKIDDAYELVVKVGRFGFVPNLFVYNALINSLCKGGDLDKAELLYSNMSLMN 395

Query: 153 VAPNAYTYAVLIKGLAAAA----------------------------DGNAKI--LGDAQ 182
           + PN  TY++LI     +                             +G  K   L  A+
Sbjct: 396 LRPNGITYSILIDSFCRSGRLDVAISYFDRMIQDGIGETVYAYNSLINGQCKFGDLSAAE 455

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              +EM  KG+ P A T+T++   + +  +V +A  L  +M   G  P+
Sbjct: 456 SLFIEMTNKGVEPTATTFTSLISGYCKDLQVQKAFKLYNKMIDNGITPN 504



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 63/152 (41%), Gaps = 7/152 (4%)

Query: 81  MRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140
           +R  G+T +   + D+  + G    A+  F ++   G    V A+ ++I      G    
Sbjct: 396 LRPNGITYSI--LIDSFCRSGRLDVAISYFDRMIQDGIGETVYAYNSLINGQCKFGDLSA 453

Query: 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTY 200
           A  +F+ M   GV P A T+  LI G           +  A K   +M+  G+ PN  T+
Sbjct: 454 AESLFIEMTNKGVEPTATTFTSLISGYCKDLQ-----VQKAFKLYNKMIDNGITPNVYTF 508

Query: 201 TAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           TA+        K+ EA  L  ++  +   P E
Sbjct: 509 TALISGLCSTNKMAEASELFDELVERKIKPTE 540



 Score = 46.2 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 62/133 (46%), Gaps = 10/133 (7%)

Query: 69  TDPRNLQEI--FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVV 123
           T   N++E    H    +GL  N V    +     K G  HEA ++ +++ + G  PD V
Sbjct: 761 TKEGNMKEAIGLHHAMLKGLLANTVTHNIIIRGFCKLGRFHEATKVLSEMTENGIFPDCV 820

Query: 124 AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQK 183
            ++ +I  Y  +G    +++++  ML  G+ P+   Y +LI G     +     L  A +
Sbjct: 821 TYSTLIYEYCRSGNVGASVKLWDTMLNRGLEPDLVAYNLLIYGCCVNGE-----LDKAFE 875

Query: 184 YLMEMVGKGMRPN 196
              +M+ +G+ P+
Sbjct: 876 LRDDMLRRGIIPD 888



 Score = 46.2 bits (108), Expect = 0.013,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 58/139 (41%), Gaps = 5/139 (3%)

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
           +LF +  + G  PD    +AV+ +         A      M A+G   +  TY VLI GL
Sbjct: 211 ELFDESVNAGVRPDPYTCSAVVRSMCELKDFLRAKEKIRWMEANGFDLSIVTYNVLIHGL 270

Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
                     + +A +    + GKG+  +  TY  +   F R Q+ +    L+ +M   G
Sbjct: 271 C-----KGDRVSEAVEVKRSLGGKGLAADVVTYCTLVLGFCRLQQFEAGIQLMDEMVELG 325

Query: 228 FVPDEKAVKEALIDKRGQG 246
           F P E AV   +   R QG
Sbjct: 326 FSPTEAAVSGLVDGLRKQG 344



 Score = 40.4 bits (93), Expect = 0.77,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 6/125 (4%)

Query: 122 VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDA 181
           +V +  +I       +  EA+ V   +   G+A +  TY  L+ G        A I    
Sbjct: 260 IVTYNVLIHGLCKGDRVSEAVEVKRSLGGKGLAADVVTYCTLVLGFCRLQQFEAGI---- 315

Query: 182 QKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
            + + EMV  G  P     + + +   +  K+D+A  L+ ++   GFVP+   V  ALI+
Sbjct: 316 -QLMDEMVELGFSPTEAAVSGLVDGLRKQGKIDDAYELVVKVGRFGFVPN-LFVYNALIN 373

Query: 242 KRGQG 246
              +G
Sbjct: 374 SLCKG 378



 Score = 39.3 bits (90), Expect = 1.5,   Method: Composition-based stats.
 Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 5/133 (3%)

Query: 99  KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAY 158
           ++G   EAL    ++  +G   D+V H  +I+        K    +   M   G+ P+  
Sbjct: 622 QEGRLMEALSASCEMIQRGINMDLVCHAVLIDGALKQPDRKTFFDLLKDMHDQGLRPDNV 681

Query: 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218
            Y  +I     + +G+ K    A +    MV +   PN  TYTA+     +A ++D A  
Sbjct: 682 IYTSMID--TYSKEGSFK---KAFECWDLMVTEECFPNVVTYTALMNGLCKAGEMDRAGL 736

Query: 219 LLQQMKAKGFVPD 231
           L ++M+A    P+
Sbjct: 737 LFKRMQAANVPPN 749



 Score = 38.9 bits (89), Expect = 2.3,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 57/139 (41%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L K     EA+++   +  KG   DVV +  ++  +    Q +  +++   M+  G
Sbjct: 266 LIHGLCKGDRVSEAVEVKRSLGGKGLAADVVTYCTLVLGFCRLQQFEAGIQLMDEMVELG 325

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            +P     + L+ GL          + DA + ++++   G  PN   Y A+  +  +   
Sbjct: 326 FSPTEAAVSGLVDGLRKQGK-----IDDAYELVVKVGRFGFVPNLFVYNALINSLCKGGD 380

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +D+A  L   M      P+
Sbjct: 381 LDKAELLYSNMSLMNLRPN 399


>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22470, mitochondrial; Flags: Precursor
 gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
 gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
 gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 619

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 82/158 (51%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F++M  +G+  + V    +   L  DG   +  ++  ++  +  +PDVV  +A+I+ + 
Sbjct: 267 LFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFV 326

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G+  EA  ++  M+  G+AP+  TY  LI G           L +A +    MV KG 
Sbjct: 327 KEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFC-----KENCLHEANQMFDLMVSKGC 381

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            P+  TY+ +  ++ +A++VD+   L +++ +KG +P+
Sbjct: 382 EPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPN 419



 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 81/153 (52%), Gaps = 8/153 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E++++M T G+  + +    + D   K+   HEA Q+F  +  KG  PD+V ++ +I +
Sbjct: 335 KELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINS 394

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y  A +  + +R+F  + + G+ PN  TY  L+ G   +   NA     A++   EMV +
Sbjct: 395 YCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNA-----AKELFQEMVSR 449

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           G+ P+  TY  + +      ++++A  + ++M+
Sbjct: 450 GVPPSVVTYGILLDGLCDNGELNKALEIFEKMQ 482



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 71/138 (51%), Gaps = 5/138 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   K+G   EA +L+ ++  +G  PD + + ++I+ +       EA ++F  M++ G
Sbjct: 321 LIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKG 380

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  TY++LI          AK + D  +   E+  KG+ PN  TY  +   F ++ K
Sbjct: 381 CEPDIVTYSILINSYC-----KAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGK 435

Query: 213 VDEARGLLQQMKAKGFVP 230
           ++ A+ L Q+M ++G  P
Sbjct: 436 LNAAKELFQEMVSRGVPP 453



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 77/184 (41%), Gaps = 41/184 (22%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPD------------------------------- 121
           + + L   G   EAL L  ++ + G  PD                               
Sbjct: 181 LINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERN 240

Query: 122 ----VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKI 177
               VV ++ VI++    G   +AL +F  M   G+  +  TY+ LI GL    DG    
Sbjct: 241 IKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGL--CNDGKWD- 297

Query: 178 LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKE 237
             D  K L EM+G+ + P+  T++A+ + FV+  K+ EA+ L  +M  +G  PD      
Sbjct: 298 --DGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPD-TITYN 354

Query: 238 ALID 241
           +LID
Sbjct: 355 SLID 358



 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 74/159 (46%), Gaps = 8/159 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F ++ ++GL  N +    +     + G  + A +LF ++  +G  P VV +  +++   
Sbjct: 407 LFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLC 466

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G+  +AL +F +M  S +      Y ++I G+      NA  + DA      +  KG+
Sbjct: 467 DNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMC-----NASKVDDAWSLFCSLSDKGV 521

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           +P+  TY  +     +   + EA  L ++MK  G  PD+
Sbjct: 522 KPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDD 560



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 80/175 (45%), Gaps = 11/175 (6%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+F +M + G+  + V    + D L  +G  ++AL++F +++       +  +  +I  
Sbjct: 440 KELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHG 499

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
             +A +  +A  +F  +   GV P+  TY V+I GL          L +A     +M   
Sbjct: 500 MCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGS-----LSEADMLFRKMKED 554

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK---EALIDKR 243
           G  P+  TY  +  A +    +  +  L+++MK  GF  D   +K   + L D+R
Sbjct: 555 GCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVIDMLSDRR 609



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 64/139 (46%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +    +G   EA+ L  ++ +    PD+V  + +I      G+  EAL +  RM+  G
Sbjct: 146 LVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYG 205

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  TY  ++  L  +  GN+ +  D  + + E   + ++ +   Y+ V ++  +   
Sbjct: 206 FQPDEVTYGPVLNRLCKS--GNSALALDLFRKMEE---RNIKASVVQYSIVIDSLCKDGS 260

Query: 213 VDEARGLLQQMKAKGFVPD 231
            D+A  L  +M+ KG   D
Sbjct: 261 FDDALSLFNEMEMKGIKAD 279



 Score = 39.3 bits (90), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 25/110 (22%), Positives = 48/110 (43%), Gaps = 5/110 (4%)

Query: 117 GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK 176
           G+ PD +  + ++  +   G+  EA+ +  RM+     P+  T + LI GL         
Sbjct: 135 GYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGR---- 190

Query: 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK 226
            + +A   +  MV  G +P+  TY  V     ++     A  L ++M+ +
Sbjct: 191 -VSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEER 239


>gi|296085006|emb|CBI28421.3| unnamed protein product [Vitis vinifera]
          Length = 740

 Score = 82.4 bits (202), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/167 (32%), Positives = 83/167 (49%), Gaps = 9/167 (5%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F +M   GL  N V    + D  SKDG    AL L  ++++ G  P+V ++ AVI   + 
Sbjct: 501 FQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSK 560

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
             +  EA ++  +M+  G+ PN  TY  LI GL    +G  +    A K   +M  +   
Sbjct: 561 ENRFSEAEKICDKMVEQGLLPNVITYTTLIDGL--CRNGRTQF---AFKIFHDMEKRKCL 615

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           PN  TY+++     +  K DEA  LL++M+ KG  PDE     +LID
Sbjct: 616 PNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFT-SLID 661



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 80/146 (54%), Gaps = 7/146 (4%)

Query: 89  NAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRM 148
           NAV   + LSK+    EA ++  ++ ++G +P+V+ +T +I+     G+ + A ++F  M
Sbjct: 552 NAV--INGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDM 609

Query: 149 LASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFV 208
                 PN YTY+ LI GL    +G A    +A+  L EM  KG+ P+  T+T++ + FV
Sbjct: 610 EKRKCLPNLYTYSSLIYGLCQ--EGKAD---EAEILLKEMERKGLAPDEVTFTSLIDGFV 664

Query: 209 RAQKVDEARGLLQQMKAKGFVPDEKA 234
              ++D A  LL++M   G  P+ + 
Sbjct: 665 VLGRIDHAFLLLRRMVDMGCKPNYRT 690



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 78/191 (40%), Gaps = 41/191 (21%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + LSK G   EA  + +QI      PDV  +T++I  +        A  VF RM+  G
Sbjct: 204 LINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEG 263

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM------------------- 193
             PN+ TY+ LI GL      N   + +A   L EM+ KG+                   
Sbjct: 264 CDPNSVTYSTLINGLC-----NEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEH 318

Query: 194 ----------------RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKE 237
                           RPN  TYTA+     R  K++ A GL  +M  +G VP+      
Sbjct: 319 EEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPN-TVTYN 377

Query: 238 ALIDKRGQGFR 248
           ALI++   G R
Sbjct: 378 ALINELCVGGR 388



 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 63/145 (43%), Gaps = 5/145 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   LS+ G    A+ L+ ++  +G +P+ V + A+I      G+   AL++F  M   G
Sbjct: 344 LISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHG 403

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
              N  TY  +IKGL    D     +  A     +M+  G  P   TY  +   ++    
Sbjct: 404 SLANTQTYNEIIKGLCLGGD-----IEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKGN 458

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKE 237
           V+ A  LL  MK  G  PDE    E
Sbjct: 459 VNNAARLLDLMKENGCEPDEWTYNE 483



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 72/166 (43%), Gaps = 8/166 (4%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M  EG   N+V    + + L  +G   EAL +  ++ +KG  P V  +T  I A  
Sbjct: 255 VFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALC 314

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
           +    +EA+ +  RM   G  PN  TY  LI GL+        I G   K    M+ +G+
Sbjct: 315 AIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAI-GLYHK----MLKEGL 369

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
            PN  TY A+        +   A  +   M+  G + + +   E +
Sbjct: 370 VPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEII 415



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 63/136 (46%), Gaps = 8/136 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           ++I  KM  +GL  N +    + D L ++G T  A ++F  ++ +  +P++  ++++I  
Sbjct: 568 EKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYG 627

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G+  EA  +   M   G+AP+  T+  LI G       +   L      L  MV  
Sbjct: 628 LCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFL-----LLRRMVDM 682

Query: 192 GMRPNAGTYTAVFEAF 207
           G +PN  TY+ + +  
Sbjct: 683 GCKPNYRTYSVLLKGL 698



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 5/134 (3%)

Query: 97  LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
           L+K  +   A  L+ Q+ + G  P ++    +I   +  G+ +EA  +  ++    ++P+
Sbjct: 173 LAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPD 232

Query: 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
            +TY  LI G     +     L  A      MV +G  PN+ TY+ +        +VDEA
Sbjct: 233 VFTYTSLILGHCRNRN-----LDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEA 287

Query: 217 RGLLQQMKAKGFVP 230
             +L++M  KG  P
Sbjct: 288 LDMLEEMIEKGIEP 301


>gi|449462477|ref|XP_004148967.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 597

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 90/185 (48%), Gaps = 14/185 (7%)

Query: 77  IFHKMRTEGLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           ++++MR  G++ +   +    + L       E L + A I  +G++PD+V +T +I+   
Sbjct: 118 LYNQMRLSGISPDCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLC 177

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA------AAADGNAKILGDAQKYLME 187
              +  +A  +F RM   G  PNA TY  L+KGL        A   + ++L D+  Y   
Sbjct: 178 MEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLY--- 234

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGF 247
             G   +P   +Y+ + +A  + ++ DEAR L ++MK +G  P   +    + ++  + F
Sbjct: 235 --GINFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLMWEEAKRLF 292

Query: 248 RGVIN 252
             ++N
Sbjct: 293 NEMVN 297



 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 85/182 (46%), Gaps = 12/182 (6%)

Query: 55  PPYDPFKKVVDEEPTDPRN--LQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQ 112
           P    +  ++D    D R    +++F +M+ +G+T   +  + +L    +  EA +LF +
Sbjct: 240 PVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVIS-YTSL----MWEEAKRLFNE 294

Query: 113 IKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172
           + ++G  P+VV    +I+     G+  EA  +   M+  G+ PN  TY  LI+G     D
Sbjct: 295 MVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGD 354

Query: 173 GNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
            N+     A++  + M  KG  P+   YT +   + +  KV+EA  L   M   G  PD 
Sbjct: 355 LNS-----ARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDV 409

Query: 233 KA 234
           K 
Sbjct: 410 KT 411



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 68/156 (43%), Gaps = 8/156 (5%)

Query: 86  LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVF 145
           LT N+  + +     G  + A +LF  +  KG  PDV+ +T +I  Y    + +EA++++
Sbjct: 340 LTYNS--LIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLY 397

Query: 146 MRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFE 205
             ML  G  P+  TY  L+ GL          +GDA+K    M   G+  +   Y     
Sbjct: 398 NGMLQVGKRPDVKTYGALLTGLFQGGK-----VGDAKKLFGVMKVYGIPGDLYIYGIFLN 452

Query: 206 AFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
              +   + EA  L  ++K+     D +     LID
Sbjct: 453 GLCKNGCLFEAMELFNKLKSYNIKLDIECFN-CLID 487



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 5/96 (5%)

Query: 76  EIFHKMRTEGLTNNAVKMF----DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           E+F+K+++  +  + ++ F    D L K G    A +LF ++  +   PDVV +  +I  
Sbjct: 465 ELFNKLKSYNIKLD-IECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHE 523

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
           +   GQ  +A  +F +M  +G  P+  TYA LI+G 
Sbjct: 524 FCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGF 559



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/130 (22%), Positives = 56/130 (43%), Gaps = 5/130 (3%)

Query: 94  FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGV 153
            + L K+G   EA++LF ++K      D+     +I+    AG+ + A  +F ++    +
Sbjct: 451 LNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEEL 510

Query: 154 APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV 213
            P+  TY ++I             +  A     +M   G  P+  TY  +   F  ++K+
Sbjct: 511 QPDVVTYNIMIHEFCRGGQ-----VVKANILFQKMEKNGCTPDKITYATLIRGFFESKKL 565

Query: 214 DEARGLLQQM 223
           ++   LL  M
Sbjct: 566 EKVVELLHMM 575



 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/196 (20%), Positives = 78/196 (39%), Gaps = 33/196 (16%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D  + +E+F  M ++G   + +    + +   K     EA++L+  +   G  PDV  + 
Sbjct: 354 DLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYG 413

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA------------------ 168
           A++      G+  +A ++F  M   G+  + Y Y + + GL                   
Sbjct: 414 ALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSY 473

Query: 169 ----------AAADGNAKI--LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
                        DG  K   L  A +   ++  + ++P+  TY  +   F R  +V +A
Sbjct: 474 NIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKA 533

Query: 217 RGLLQQMKAKGFVPDE 232
             L Q+M+  G  PD+
Sbjct: 534 NILFQKMEKNGCTPDK 549


>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
 gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
          Length = 755

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 74/159 (46%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F KMR      + V    + D L K     EA Q+   ++D+   P+V+ ++++I+  
Sbjct: 322 KLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGL 381

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              GQ ++A  VF RM+  G+ PN  TY  LI G       ++ +L      + EM   G
Sbjct: 382 CKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALL-----LMEEMTATG 436

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             P+  TY  + +   +  +  EA  L   MKAK   PD
Sbjct: 437 CLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPD 475



 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 67/136 (49%), Gaps = 5/136 (3%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K G   EA +LF ++++    PDVV  TA+++      + +EA +V   M      P
Sbjct: 310 GLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTP 369

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           N  TY+ LI GL          + DAQ+    M+ +G+ PN  TY ++   F     VD 
Sbjct: 370 NVITYSSLIDGLCKTGQ-----VRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDS 424

Query: 216 ARGLLQQMKAKGFVPD 231
           A  L+++M A G +PD
Sbjct: 425 ALLLMEEMTATGCLPD 440



 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 78/149 (52%), Gaps = 6/149 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K G   EA +LF  +K K   PDV+ ++ +I  +    +   A  +F  ML   
Sbjct: 447 LIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQA 506

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V P+  T++ L++G       NA ++ DA++ L EMV     P+  TYT++ + F +  +
Sbjct: 507 VLPDVVTFSTLVEGYC-----NAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGR 561

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALID 241
           + EAR +L++M  +G  P+      ALID
Sbjct: 562 MVEARRVLKRMAKRGCQPN-VVTYTALID 589



 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 67/126 (53%), Gaps = 5/126 (3%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A  LF  +  +  +PDVV  + ++E Y +AG   +A R+   M+AS  +P+ YTY  L+ 
Sbjct: 495 ARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVD 554

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G           + +A++ L  M  +G +PN  TYTA+ +AF RA K   A  LL++M  
Sbjct: 555 GFCKVGR-----MVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVG 609

Query: 226 KGFVPD 231
            G  P+
Sbjct: 610 NGVQPN 615



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 67/157 (42%), Gaps = 5/157 (3%)

Query: 76  EIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASA 135
           + F  M  E        M D L K     EA   FA++K KG +P+   +  +I  +   
Sbjct: 115 DYFRSMECEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKV 174

Query: 136 GQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP 195
            +   A  +   M  SG+APN  TY+ +I G           +  A K   +MV  G  P
Sbjct: 175 HKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTK-----VDTAYKLFRQMVENGCMP 229

Query: 196 NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           N  TY  +     R   +DEA  LL +M+ +G  PD+
Sbjct: 230 NLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDK 266



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 64/132 (48%), Gaps = 5/132 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +     GL  +A +L  ++      PDV  +T++++ +   G+  EA RV  RM   G
Sbjct: 517 LVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRG 576

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN  TY  LI     A          A + L EMVG G++PN  TY ++   F     
Sbjct: 577 CQPNVVTYTALIDAFCRAGKPTV-----AYRLLEEMVGNGVQPNVITYRSLIGGFCGTGD 631

Query: 213 VDEARGLLQQMK 224
           ++EAR +L++++
Sbjct: 632 LEEARKILERLE 643



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 74/159 (46%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F +M   G   N V    +   L ++GL  EA +L  +++++G  PD  ++  ++   
Sbjct: 217 KLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGL 276

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+   AL+VF         P+   Y+ LI GL  A       L +A K   +M    
Sbjct: 277 CKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGR-----LDEACKLFEKMRENS 331

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             P+  T+TA+ +   +  ++ EA+ +L+ M+ +   P+
Sbjct: 332 CEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPN 370



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 7/155 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   K G   EA ++  ++  +G  P+VV +TA+I+A+  AG+   A R+   M+ +G
Sbjct: 552 LVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNG 611

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV-GKGMRPNAGTYTAVFEAFVRAQ 211
           V PN  TY  LI G     D     L +A+K L  +   +  + +   Y  + +   R  
Sbjct: 612 VQPNVITYRSLIGGFCGTGD-----LEEARKILERLERDENCKADMFAYRVMMDGLCRTG 666

Query: 212 KVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
           ++  A  LL+ +K  G  P    +  ALI    QG
Sbjct: 667 RMSAALELLEAIKQSG-TPPRHDIYVALIRGLCQG 700



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 73/194 (37%), Gaps = 31/194 (15%)

Query: 69  TDPRNLQEIFH-KMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVA 124
           +DP      FH   + +G  +N     ++F+AL +     E   +       G  P+V  
Sbjct: 2   SDPDAALRFFHWASKQQGFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFT 61

Query: 125 HTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAA-------------- 170
           +  VI+    +G   +A  +   M  SG  P+A  Y  +I  L  A              
Sbjct: 62  YAVVIQGLCKSGDLDKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSME 121

Query: 171 -----------ADGNAKI--LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
                       DG  K   L +A  Y  +M  KG  PN  TY  +   F +  KV  A 
Sbjct: 122 CEKNVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAY 181

Query: 218 GLLQQMKAKGFVPD 231
            LL++MK  G  P+
Sbjct: 182 LLLKEMKESGLAPN 195



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 72/175 (41%), Gaps = 9/175 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +M+  GL  N V    +     +      A +LF Q+ + G MP++V +  ++    
Sbjct: 183 LLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLC 242

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G   EA  +   M   G+ P+ ++Y  L+ GL          +  A K   +      
Sbjct: 243 RNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGK-----IDMALKVFEDNSNGDC 297

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFR 248
            P+   Y+ +     +A ++DEA  L ++M+     PD      AL+D   +G R
Sbjct: 298 PPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFT-ALMDGLCKGDR 351



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 66/152 (43%), Gaps = 10/152 (6%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQI-KDKGHMPDVVAHTAVIEAY 132
           +  +M   G+  N +    +       G   EA ++  ++ +D+    D+ A+  +++  
Sbjct: 603 LLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKILERLERDENCKADMFAYRVMMDGL 662

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM-VGK 191
              G+   AL +   +  SG  P    Y  LI+GL        K LG A + L EM + +
Sbjct: 663 CRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLC-----QGKELGKAMEVLEEMTLSR 717

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
             RPNA  Y AV +   R  + +EA  L  ++
Sbjct: 718 KSRPNAEAYEAVIQELAREGRHEEANALADEL 749


>gi|414882130|tpg|DAA59261.1| TPA: hypothetical protein ZEAMMB73_845952 [Zea mays]
          Length = 1603

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 10/156 (6%)

Query: 80   KMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
            +M  EG+    V    M   L + GL   A   FA+++  G +PDV+ + +++  Y  AG
Sbjct: 1215 EMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAG 1274

Query: 137  QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD-GNAKILGDAQKYLMEMVGKGMRP 195
              KEAL +F  +  +G+AP   TY +LI G     D   A+IL +      EM  +G  P
Sbjct: 1275 NLKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARILKE------EMGEQGCLP 1328

Query: 196  NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            N  TYT + +  +  + +  AR    +M +KG  PD
Sbjct: 1329 NVCTYTILMKGSLNVRSLAMAREFFDEMLSKGLQPD 1364



 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 82/184 (44%), Gaps = 13/184 (7%)

Query: 72   RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
            ++ +E+  KM + GL  + +    +  A  + GL  EA ++F  +   G +P  V  T +
Sbjct: 1417 KDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISDGLLPSAVTFTVI 1476

Query: 129  IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
            I AY   G    A   F +ML  GV PN  TY VLI  L     G  ++   A  +  EM
Sbjct: 1477 IHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRM--GRTQL---ASHHFHEM 1531

Query: 189  VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFR 248
            + +G+  N  TYT + +   +    ++A     +M   G  PD    K  L     +GF 
Sbjct: 1532 LERGLVANKYTYTLLIDGNCKVGNWEDAMRFYFEMHQNGIHPDYLTHKALL-----KGFD 1586

Query: 249  GVIN 252
            G ++
Sbjct: 1587 GHVH 1590



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 81/169 (47%), Gaps = 9/169 (5%)

Query: 76   EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
            E+   +  EG++++ V    +   L K G   +A +L  ++   G  PD + +T +I A+
Sbjct: 1386 ELREVLMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAH 1445

Query: 133  ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               G  +EA ++F  M++ G+ P+A T+ V+I   A    GN   L  A  +  +M+ +G
Sbjct: 1446 CERGLLREARKIFNNMISDGLLPSAVTFTVIIH--AYCRRGN---LYSAYGWFRKMLEEG 1500

Query: 193  MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
            + PN  TY  +  A  R  +   A     +M  +G V + K     LID
Sbjct: 1501 VEPNEITYNVLIHALCRMGRTQLASHHFHEMLERGLVAN-KYTYTLLID 1548



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 5/125 (4%)

Query: 106  ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
            A + F ++  KG  PD  A+   I A    G    A  +   ++  G++ +  TY +LI 
Sbjct: 1349 AREFFDEMLSKGLQPDCFAYNTRICAELILGDIARAFELREVLMLEGISSDTVTYNILIH 1408

Query: 166  GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
            GL     GN K   DA++  M+MV  G++P+  TYT +  A      + EAR +   M +
Sbjct: 1409 GLCKT--GNLK---DAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMIS 1463

Query: 226  KGFVP 230
             G +P
Sbjct: 1464 DGLLP 1468



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 75/161 (46%), Gaps = 8/161 (4%)

Query: 75   QEIFHKMRTEGLTNNAVKMFDALSKD---GLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            +E F +M ++GL  +       +  +   G    A +L   +  +G   D V +  +I  
Sbjct: 1350 REFFDEMLSKGLQPDCFAYNTRICAELILGDIARAFELREVLMLEGISSDTVTYNILIHG 1409

Query: 132  YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
                G  K+A  + M+M+++G+ P+  TY  LI      A     +L +A+K    M+  
Sbjct: 1410 LCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIH-----AHCERGLLREARKIFNNMISD 1464

Query: 192  GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
            G+ P+A T+T +  A+ R   +  A G  ++M  +G  P+E
Sbjct: 1465 GLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNE 1505



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 71/157 (45%), Gaps = 8/157 (5%)

Query: 78   FHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
            F +MR  GL  + +    + +   K G   EAL LF  ++  G  P V+ +  +I+ Y  
Sbjct: 1248 FAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNILIDGYCR 1307

Query: 135  AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
             G  +EA  +   M   G  PN  TY +L+KG       N + L  A+++  EM+ KG++
Sbjct: 1308 LGDLEEARILKEEMGEQGCLPNVCTYTILMKG-----SLNVRSLAMAREFFDEMLSKGLQ 1362

Query: 195  PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            P+   Y     A +    +  A  L + +  +G   D
Sbjct: 1363 PDCFAYNTRICAELILGDIARAFELREVLMLEGISSD 1399



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 13/135 (9%)

Query: 101  GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
            G   +   L  +++++G MP VV + A+I     +G  + A   F  M A G+ P+  TY
Sbjct: 1204 GCVKKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITY 1263

Query: 161  AVLIKGLAAAADGNAK----ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
              L+ G   A  GN K    + GD ++        G+ P   TY  + + + R   ++EA
Sbjct: 1264 NSLLNGYCKA--GNLKEALLLFGDLRR-------AGLAPTVLTYNILIDGYCRLGDLEEA 1314

Query: 217  RGLLQQMKAKGFVPD 231
            R L ++M  +G +P+
Sbjct: 1315 RILKEEMGEQGCLPN 1329



 Score = 46.2 bits (108), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 50/127 (39%), Gaps = 7/127 (5%)

Query: 100  DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYT 159
            D  +   L  F ++   G  PDV     V+     A +  +   V   ML  G+ P+  T
Sbjct: 1062 DTCSTLCLSAFREMASHGVAPDVKDCNRVLRVLRDAARWDDICAVHEEMLELGIEPSIVT 1121

Query: 160  YAVLIKGLAAAA--DGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
            Y  L+         D  A +L +     ME  G G  PN  TY  V     R   ++EA 
Sbjct: 1122 YNTLLDSFLKEGRKDKVAMLLKE-----METRGSGCLPNDVTYNVVITGLTRKGDLEEAA 1176

Query: 218  GLLQQMK 224
             L++ M+
Sbjct: 1177 ELVEGMR 1183


>gi|299471535|emb|CBN80021.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 607

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 79/160 (49%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+  +M T GL  N V      DA  +     EA+ L  ++   G  PDV ++++ I A
Sbjct: 438 KELLREMATVGLAPNEVCYNSAIDACGRGDQWEEAVDLLREMPTVGLSPDVFSYSSAIAA 497

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
            A   Q KEAL V   M A+G+AP+   Y   I   A +  G  K+   A   L EM   
Sbjct: 498 CAKGDQWKEALAVLKEMSAAGLAPDLICYNSAID--ACSKGGRWKM---AVALLGEMRAA 552

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G+ PN  +Y++  +A VR  +  E   LL++M+  G VPD
Sbjct: 553 GLTPNIISYSSAIDACVRGGQWKEGIALLEEMRGSGVVPD 592



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/183 (31%), Positives = 93/183 (50%), Gaps = 11/183 (6%)

Query: 77  IFHKMRTEGLTNNAVKMFDALS---KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +M T GL  + +    A+S   + G   EAL+LF  ++  G  PDV+ + + I A A
Sbjct: 160 LVKEMATVGLAPDVISYSSAISACGRGGRWEEALELFEDMRTSGVAPDVITYGSAIAACA 219

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
           + G+ KEA+ +  ++   G+ PN  +Y+ +I   A A +G  KI   A   L EM    +
Sbjct: 220 NGGRWKEAVSLLRKIPTVGLTPNVISYSSVIT--ACAKEGQWKI---ALDLLREMKAMRL 274

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID--KRGQGFRGVI 251
            PN  TY A  +A  +  +  EA  LL++M   G  PD  +   ++ID   +G  ++  I
Sbjct: 275 APNIITYNAAIDACAKGGRWKEAIDLLREMPTVGLPPDVVSYS-SVIDACSKGDRWKEAI 333

Query: 252 NIL 254
           +IL
Sbjct: 334 DIL 336



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 83/184 (45%), Gaps = 10/184 (5%)

Query: 53  LPPPYDPFKKVVDEEPTDPRNLQ--EIFHKMRTEGLTNNAVKM---FDALSKDGLTHEAL 107
           LPP    +  V+D      R  +  +I  +M T GL+ NA+      DA +K G   EA 
Sbjct: 309 LPPDVVSYSSVIDACSKGDRWKEAIDILREMPTVGLSPNAISYNSAIDACAKGGQWKEAK 368

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
            L  ++   G    V+ + + I A A   Q KEAL +   M   G+    ++Y+  I   
Sbjct: 369 GLLREMPTAGVTQRVIGYNSAIAACAKGEQWKEALALLREMPTVGLHTTVFSYSSAID-- 426

Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
            A   GN  I   A++ L EM   G+ PN   Y +  +A  R  + +EA  LL++M   G
Sbjct: 427 -ACGKGNLWI--KAKELLREMATVGLAPNEVCYNSAIDACGRGDQWEEAVDLLREMPTVG 483

Query: 228 FVPD 231
             PD
Sbjct: 484 LSPD 487



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 77/153 (50%), Gaps = 6/153 (3%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
           A  + G   +A++L  ++  +G  PD+ A++AVI+A A  GQ K A+   M M   G+AP
Sbjct: 42  ACGRGGQWEQAVRLLREMPTEGAAPDLSAYSAVIDACAKGGQWKMAVFFLMEMPTKGIAP 101

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +A +Y   I   A A  G  KI   A   L EM+ + + PN   Y +   +  +A + + 
Sbjct: 102 DARSYGAAIN--ACARGGRWKI---ALDLLREMLARDVTPNVIIYNSAINSCAKAGQWEI 156

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFR 248
           A  L+++M   G  PD  +   A I   G+G R
Sbjct: 157 AVSLVKEMATVGLAPDVISYSSA-ISACGRGGR 188



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 84/176 (47%), Gaps = 9/176 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++  +M    +T N +      ++ +K G    A+ L  ++   G  PDV+++++ I A 
Sbjct: 124 DLLREMLARDVTPNVIIYNSAINSCAKAGQWEIAVSLVKEMATVGLAPDVISYSSAISAC 183

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+ +EAL +F  M  SGVAP+  TY     G A AA  N     +A   L ++   G
Sbjct: 184 GRGGRWEEALELFEDMRTSGVAPDVITY-----GSAIAACANGGRWKEAVSLLRKIPTVG 238

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFR 248
           + PN  +Y++V  A  +  +   A  LL++MKA    P+      A ID   +G R
Sbjct: 239 LTPNVISYSSVITACAKEGQWKIALDLLREMKAMRLAPN-IITYNAAIDACAKGGR 293



 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 71/158 (44%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +M TEG   +      + DA +K G    A+    ++  KG  PD  ++ A I A A
Sbjct: 55  LLREMPTEGAAPDLSAYSAVIDACAKGGQWKMAVFFLMEMPTKGIAPDARSYGAAINACA 114

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G+ K AL +   MLA  V PN   Y   I   A A  G  +I   A   + EM   G+
Sbjct: 115 RGGRWKIALDLLREMLARDVTPNVIIYNSAINSCAKA--GQWEI---AVSLVKEMATVGL 169

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            P+  +Y++   A  R  + +EA  L + M+  G  PD
Sbjct: 170 APDVISYSSAISACGRGGRWEEALELFEDMRTSGVAPD 207



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 71/143 (49%), Gaps = 7/143 (4%)

Query: 86  LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVF 145
           +T NA    DA +K G   EA+ L  ++   G  PDVV++++VI+A +   + KEA+ + 
Sbjct: 279 ITYNAA--IDACAKGGRWKEAIDLLREMPTVGLPPDVVSYSSVIDACSKGDRWKEAIDIL 336

Query: 146 MRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFE 205
             M   G++PNA +Y   I   A A  G  K   +A+  L EM   G+      Y +   
Sbjct: 337 REMPTVGLSPNAISYNSAID--ACAKGGQWK---EAKGLLREMPTAGVTQRVIGYNSAIA 391

Query: 206 AFVRAQKVDEARGLLQQMKAKGF 228
           A  + ++  EA  LL++M   G 
Sbjct: 392 ACAKGEQWKEALALLREMPTVGL 414



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 6/135 (4%)

Query: 98  SKDGLTHEALQLFAQIKD-KGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
           S+ G   +AL+    +K   G + D  ++   I A    GQ ++A+R+   M   G AP+
Sbjct: 8   SRSGDWRKALRAVDGMKKLPGWLIDQKSYCMAITACGRGGQWEQAVRLLREMPTEGAAPD 67

Query: 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
              Y+ +I   A A  G  K+   A  +LMEM  KG+ P+A +Y A   A  R  +   A
Sbjct: 68  LSAYSAVID--ACAKGGQWKM---AVFFLMEMPTKGIAPDARSYGAAINACARGGRWKIA 122

Query: 217 RGLLQQMKAKGFVPD 231
             LL++M A+   P+
Sbjct: 123 LDLLREMLARDVTPN 137



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 3/91 (3%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +M   GL  + +      DA SK G    A+ L  +++  G  P+++++++ I+A  
Sbjct: 510 VLKEMSAAGLAPDLICYNSAIDACSKGGRWKMAVALLGEMRAAGLTPNIISYSSAIDACV 569

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
             GQ KE + +   M  SGV P+  TY  L+
Sbjct: 570 RGGQWKEGIALLEEMRGSGVVPDVITYHALM 600


>gi|225424122|ref|XP_002280156.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Vitis vinifera]
          Length = 718

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 70/138 (50%), Gaps = 5/138 (3%)

Query: 95  DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           D L K G   EA +L  ++   G +PD V +T++I A+   G+ ++   +F  ML+ G+ 
Sbjct: 522 DGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLT 581

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
           P+  TY VLI G A         L  A  Y  EM  KG+ PN  TY ++     + +++D
Sbjct: 582 PSVVTYTVLIHGHAGKGR-----LERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMD 636

Query: 215 EARGLLQQMKAKGFVPDE 232
           +A     +M  KG  P++
Sbjct: 637 QAYNFFAEMVEKGIFPNK 654



 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 88/198 (44%), Gaps = 11/198 (5%)

Query: 53  LPPPYDPFKKVVD--EEPTDPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEAL 107
            PP    +  VVD   +  +     E+  KM ++G+  + V    +  A  ++G   +  
Sbjct: 510 FPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGR 569

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
           ++F ++  KG  P VV +T +I  +A  G+ + A   F  M   G+ PN  TY  LI GL
Sbjct: 570 EIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNSLINGL 629

Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
                   + +  A  +  EMV KG+ PN  +YT +           EA  L +QM  +G
Sbjct: 630 C-----KVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRG 684

Query: 228 FVPDEKAVKEALIDKRGQ 245
             PD      AL+ + G+
Sbjct: 685 VQPD-SCTHSALLKQLGK 701



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 83/170 (48%), Gaps = 10/170 (5%)

Query: 55  PPYDPFKKVVDE--EPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQL 109
           P Y  +  ++    E    R  +EIF++M ++GLT + V    +    +  G    A   
Sbjct: 547 PDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIY 606

Query: 110 FAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169
           F+++++KG +P+V+ + ++I       +  +A   F  M+  G+ PN Y+Y +LI     
Sbjct: 607 FSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILIN---- 662

Query: 170 AADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGL 219
             + N     +A     +M+ +G++P++ T++A+ +   +  K+   R L
Sbjct: 663 -ENCNMGNWQEALSLYKQMLDRGVQPDSCTHSALLKQLGKDCKLQAVRQL 711



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 86/202 (42%), Gaps = 25/202 (12%)

Query: 50  KSKLPPPYDPFKKVVDEEPT-DPRNLQEIFHKMRTEGLTNNAVKMF-------------- 94
           KS +      F K++    + D +N   I   +R + L + AV+++              
Sbjct: 177 KSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVT 236

Query: 95  -----DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRML 149
                D+  K G   + L L ++++ +G  P+ V +  +I   +  G+ ++A  +   ML
Sbjct: 237 YNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEML 296

Query: 150 ASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
            +G+  +AYTY  LI G       N  +L +A     EMV KG  P   TY +      +
Sbjct: 297 KTGLKVSAYTYNPLIYGYF-----NKGMLAEALSLQEEMVLKGASPTVATYNSFIYGLCK 351

Query: 210 AQKVDEARGLLQQMKAKGFVPD 231
             ++ +A   L  M A   +PD
Sbjct: 352 LGRMSDAMQQLSDMLANNLLPD 373



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 64/142 (45%), Gaps = 11/142 (7%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L + G    A QL  ++ ++G  PD+V +T ++      G    A   F  ML  G
Sbjct: 415 LLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEG 474

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM---EMVGKGMRPNAGTYTAVFEAFVR 209
           +  ++Y YA  I G           LGD  +      EM+ KG  P+   Y  V +   +
Sbjct: 475 LELDSYAYATRIVGELK--------LGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCK 526

Query: 210 AQKVDEARGLLQQMKAKGFVPD 231
              ++EA  LLQ+M + G +PD
Sbjct: 527 LGNLEEASELLQKMVSDGVIPD 548



 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 77/161 (47%), Gaps = 10/161 (6%)

Query: 75  QEIFHKMRTEGLTNN----AVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           QE F +M  EGL  +    A ++   L K G T  A  L  ++  KG  PD++ +  V++
Sbjct: 464 QEFFDEMLHEGLELDSYAYATRIVGEL-KLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVD 522

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
                G  +EA  +  +M++ GV P+  TY  +I   A   +G    L   ++   EM+ 
Sbjct: 523 GLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIH--AHLENGR---LRKGREIFYEMLS 577

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           KG+ P+  TYT +        +++ A     +M+ KG +P+
Sbjct: 578 KGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPN 618



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 5/139 (3%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K G   +A+Q  + +     +PDVV++  +I  Y   G   +A  +F  + +  + P
Sbjct: 348 GLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFP 407

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
              TY  L+ GL    +     L  AQ+  +EM+ +G+ P+  TYT +     +   +  
Sbjct: 408 TIVTYNTLLDGLCRQGE-----LEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSM 462

Query: 216 ARGLLQQMKAKGFVPDEKA 234
           A+    +M  +G   D  A
Sbjct: 463 AQEFFDEMLHEGLELDSYA 481



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 61/127 (48%), Gaps = 5/127 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +A  LF +++     P +V +  +++     G+ + A ++ + M+  G+AP+  TY +L+
Sbjct: 392 KAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILV 451

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            G           L  AQ++  EM+ +G+  ++  Y       ++      A  L ++M 
Sbjct: 452 NGSCKMGS-----LSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEML 506

Query: 225 AKGFVPD 231
           AKGF PD
Sbjct: 507 AKGFPPD 513



 Score = 42.4 bits (98), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 58/146 (39%), Gaps = 15/146 (10%)

Query: 90  AVKMFDAL----SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVF 145
           +VK+ D L    SK  +  + L +F ++      PDV     ++          +A+ V+
Sbjct: 163 SVKILDLLIWVYSKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVY 222

Query: 146 MRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQK---YLMEMVGKGMRPNAGTYTA 202
             M   G+ P   TY  L+              G  Q+    L EM  +G  PN  TY  
Sbjct: 223 RTMGEFGIKPTIVTYNTLLDSYCKG--------GKVQQGLDLLSEMQRRGCAPNDVTYNV 274

Query: 203 VFEAFVRAQKVDEARGLLQQMKAKGF 228
           +     +  + ++A+GL+ +M   G 
Sbjct: 275 LINGLSKKGEFEQAKGLIGEMLKTGL 300


>gi|449488099|ref|XP_004157939.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 86/180 (47%), Gaps = 8/180 (4%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D +   E+F +M + G+  N      + D   K G    A+ ++ ++   G +PDVV  T
Sbjct: 300 DMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFT 359

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
           ++I+ Y   G+  + L+++  M    ++PN YTYAVLI  L          + +A+ +L 
Sbjct: 360 SLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENR-----IREARNFLR 414

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
            +    + P    Y  V + F +A KVDEA  ++ +M+ K   PD+      +I    +G
Sbjct: 415 HLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIGNCMKG 474



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 62/116 (53%), Gaps = 5/116 (4%)

Query: 116 KGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNA 175
           KG  PDV+ +T++I  Y   G  K A  +F  M++SG+ PN +T+ VLI G      GN 
Sbjct: 279 KGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKV--GNM 336

Query: 176 KILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +    A     +M+  G  P+  T+T++ + + R  +V++   L ++MK +   P+
Sbjct: 337 R---SAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPN 389



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 68/159 (42%), Gaps = 10/159 (6%)

Query: 88  NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMR 147
           NN + M   L K  L  EA+ LF +  +   +PDV +   +I      G+  +A   F  
Sbjct: 183 NNLLNM---LVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQN 239

Query: 148 MLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME-MVGKGMRPNAGTYTAVFEA 206
           M   G  P+  +Y  LI G     +     +      L E M+ KG+ P+  TYT++   
Sbjct: 240 MGNFGCFPDIVSYNTLINGFCRVNE-----ISKGHDLLKEDMLIKGVSPDVITYTSIISG 294

Query: 207 FVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
           + +   +  A  L  +M + G  P++      LID  G+
Sbjct: 295 YCKLGDMKAASELFDEMVSSGIKPNDFTFN-VLIDGFGK 332


>gi|449446624|ref|XP_004141071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 86/180 (47%), Gaps = 8/180 (4%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D +   E+F +M + G+  N      + D   K G    A+ ++ ++   G +PDVV  T
Sbjct: 300 DMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFT 359

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
           ++I+ Y   G+  + L+++  M    ++PN YTYAVLI  L          + +A+ +L 
Sbjct: 360 SLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENR-----IREARNFLR 414

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
            +    + P    Y  V + F +A KVDEA  ++ +M+ K   PD+      +I    +G
Sbjct: 415 HLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIGNCMKG 474



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 62/116 (53%), Gaps = 5/116 (4%)

Query: 116 KGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNA 175
           KG  PDV+ +T++I  Y   G  K A  +F  M++SG+ PN +T+ VLI G      GN 
Sbjct: 279 KGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKV--GNM 336

Query: 176 KILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +    A     +M+  G  P+  T+T++ + + R  +V++   L ++MK +   P+
Sbjct: 337 R---SAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPN 389



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 68/159 (42%), Gaps = 10/159 (6%)

Query: 88  NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMR 147
           NN + M   L K  L  EA+ LF +  +   +PDV +   +I      G+  +A   F  
Sbjct: 183 NNLLNM---LVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQN 239

Query: 148 MLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME-MVGKGMRPNAGTYTAVFEA 206
           M   G  P+  +Y  LI G     +     +      L E M+ KG+ P+  TYT++   
Sbjct: 240 MGNFGCFPDIVSYNTLINGFCRVNE-----ISKGHDLLKEDMLIKGVSPDVITYTSIISG 294

Query: 207 FVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
           + +   +  A  L  +M + G  P++      LID  G+
Sbjct: 295 YCKLGDMKAASELFDEMVSSGIKPNDFTFN-VLIDGFGK 332


>gi|357166198|ref|XP_003580632.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
           mitochondrial-like [Brachypodium distachyon]
          Length = 644

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 85/170 (50%), Gaps = 11/170 (6%)

Query: 77  IFHKMRTEGLTNNA-----VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +F +M   G+  +      V +  AL K+G   E L +F ++   G+      +TA+I+ 
Sbjct: 302 LFQEMEEMGMGKDIPQHAYVLVIGALCKEGKPFEGLAVFERMLKSGYPAKAAMYTALIDT 361

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G+  EA+ +F RM ASG+  +A TY V++  L      +  IL          V K
Sbjct: 362 MGKFGRENEAMLLFERMKASGLELDAITYGVIVNCLCRFGKLDEAILC-----FRNCVEK 416

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           G+  NA  YT++ + F +A  VD+A+ L ++MK KGFVPD       LID
Sbjct: 417 GIAVNAIFYTSLIDGFGKAGMVDQAQELFEEMKVKGFVPDSYCYN-VLID 465



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 8/163 (4%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M+  GL  +A+    + + L + G   EA+  F    +KG   + + +T++I+ + 
Sbjct: 374 LFERMKASGLELDAITYGVIVNCLCRFGKLDEAILCFRNCVEKGIAVNAIFYTSLIDGFG 433

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG   +A  +F  M   G  P++Y Y VLI GLA A       L DA      M   G 
Sbjct: 434 KAGMVDQAQELFEEMKVKGFVPDSYCYNVLIDGLAKAGR-----LDDACALYKRMEDDGC 488

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK 236
                TYT + +   +  K +EA      M  KG  P   A +
Sbjct: 489 DQTVYTYTIIIDGLFKKHKNEEAIKFWNTMIDKGITPTAAAFR 531



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 71/158 (44%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
            F     +G+  NA+    + D   K G+  +A +LF ++K KG +PD   +  +I+  A
Sbjct: 409 CFRNCVEKGIAVNAIFYTSLIDGFGKAGMVDQAQELFEEMKVKGFVPDSYCYNVLIDGLA 468

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG+  +A  ++ RM   G     YTY ++I GL            +A K+   M+ KG+
Sbjct: 469 KAGRLDDACALYKRMEDDGCDQTVYTYTIIIDGLFKKHKNE-----EAIKFWNTMIDKGI 523

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            P A  +         + K   A  +L ++   G +P+
Sbjct: 524 TPTAAAFRTFANGLCLSGKFSRACRILDELAPMGVIPE 561



 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 65/143 (45%), Gaps = 14/143 (9%)

Query: 105 EALQLFAQIKDKGHMPDVVAH------TAVIEAYASAGQGKEALRVFMRMLASGVAPNAY 158
            A QL A+++ +G    V+ H       ++I + A+ G   E L  +  M  +GV P+  
Sbjct: 152 HARQLVAELRARGDA--VLMHLTPPSSASLIRSLAALGLADELLWAWSAMRLAGVEPSRV 209

Query: 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG-MRPNAGTYTAVFEAFVRAQKVDEAR 217
           TY  L+ GLA     NA +L  A      M  +  +RP+  +Y  + + + RA +  +A 
Sbjct: 210 TYNCLLDGLA-----NAGLLDTAINVFDAMSTEDRVRPDVVSYNILIKGYCRAGRAQDAM 264

Query: 218 GLLQQMKAKGFVPDEKAVKEALI 240
             L  M+ +  +  +K     L+
Sbjct: 265 ARLAHMREQAELSPDKVTYLTLM 287


>gi|71027557|ref|XP_763422.1| hypothetical protein [Theileria parva strain Muguga]
 gi|68350375|gb|EAN31139.1| hypothetical protein TP03_0402 [Theileria parva]
          Length = 596

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 83/167 (49%), Gaps = 17/167 (10%)

Query: 86  LTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHM-PDVVAHTAVIEAYASAGQGKEA 141
           +TNN +    MFDA   +     A++LF  +K++G + P+ + +T +I+ Y    Q  +A
Sbjct: 200 VTNNEIVYGCMFDAYVNNNSVDSAMRLFEDMKERGKVKPNTIMYTTLIKGYGQNKQLDKA 259

Query: 142 LRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYT 201
           +R+F  M   GV PN  TY  +I   A   + N+     A + L EM+  G+ P+  T++
Sbjct: 260 MRIFRLMQQDGVQPNTVTYNSVIDACARVGEMNS-----ATRLLEEMLSSGIEPDLITFS 314

Query: 202 AVFEAFVRAQKVDEARGLLQQMKAKGFVPD--------EKAVKEALI 240
            + + +     +D++  LL  M  +G +PD        E  VK  L+
Sbjct: 315 TIIKGYCVQSDMDKSFQLLSVMYERGIMPDVILYNSLLEGCVKSGLL 361



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 78/177 (44%), Gaps = 11/177 (6%)

Query: 60  FKKVVDEEPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSK----DGLTHEALQLFAQIKD 115
           F   V+    D      +F  M+  G       M+  L K    +    +A+++F  ++ 
Sbjct: 211 FDAYVNNNSVDSA--MRLFEDMKERGKVKPNTIMYTTLIKGYGQNKQLDKAMRIFRLMQQ 268

Query: 116 KGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNA 175
            G  P+ V + +VI+A A  G+   A R+   ML+SG+ P+  T++ +IKG    +D   
Sbjct: 269 DGVQPNTVTYNSVIDACARVGEMNSATRLLEEMLSSGIEPDLITFSTIIKGYCVQSD--- 325

Query: 176 KILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
             +  + + L  M  +G+ P+   Y ++ E  V++  +     L  QM+     P  
Sbjct: 326 --MDKSFQLLSVMYERGIMPDVILYNSLLEGCVKSGLLWLCEKLWSQMQEYNIPPSN 380



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 44/208 (21%), Positives = 79/208 (37%), Gaps = 37/208 (17%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           IF  M+ +G+  N V    + DA ++ G  + A +L  ++   G  PD++  + +I+ Y 
Sbjct: 262 IFRLMQQDGVQPNTVTYNSVIDACARVGEMNSATRLLEEMLSSGIEPDLITFSTIIKGYC 321

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA--DGNAKILGDAQKY------- 184
                 ++ ++   M   G+ P+   Y  L++G   +       K+    Q+Y       
Sbjct: 322 VQSDMDKSFQLLSVMYERGIMPDVILYNSLLEGCVKSGLLWLCEKLWSQMQEYNIPPSNF 381

Query: 185 ----LMEMVGK------------------GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
               L++M G+                      N   YT +  A +   K      + + 
Sbjct: 382 TLTILIKMYGRSGQLDKVFELADELPKRYNFSINTHVYTCLMSACITNGKYSMVLDIYKY 441

Query: 223 MKAKGFVPDEKAVKEALID--KRGQGFR 248
           MK  G  PD K   E +I    RG  F+
Sbjct: 442 MKINGVKPDAKTF-ETIIQGLSRGSLFK 468


>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein
           [Arabidopsis lyrata subsp. lyrata]
 gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 1164

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 81/165 (49%), Gaps = 8/165 (4%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D R   + F++M +  +T + +    +     + G   EA +LF ++  +G  PD++  T
Sbjct: 789 DIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFT 848

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
            ++  Y  AG  K+A RV   M+ +G +PN  TY  LI GL    D     L  A + L 
Sbjct: 849 ELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGD-----LDSANELLH 903

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           EM   G++PN  TY ++     ++  ++EA  L+ + +A G   D
Sbjct: 904 EMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNAD 948



 Score = 77.0 bits (188), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 46/167 (27%), Positives = 79/167 (47%), Gaps = 8/167 (4%)

Query: 70   DPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
            D  +  E+ H+M   GL  N      + + L K G   EA++L  + +  G   D V +T
Sbjct: 894  DLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYT 953

Query: 127  AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
             +++AY  +G+  +A  +   ML  G+ P   T+ VL+ G          +L D +K L 
Sbjct: 954  TLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHG-----MLEDGEKLLN 1008

Query: 187  EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK 233
             M+ KG+ PNA T+  + + +     +  A  + + M ++G  PD K
Sbjct: 1009 WMLAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGK 1055



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E F +M  +G+  + +    + D   K G    A + F ++  +   PDV+ +TA+I  
Sbjct: 759 EEAFSEMIGQGILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISG 818

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +   G   EA ++F  ML  G+ P+  T+  L+ G   A  G+ K   DA +    M+  
Sbjct: 819 FCQIGDMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKA--GHIK---DAFRVHNHMIQA 873

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G  PN  TYT + +   +   +D A  LL +M   G  P+
Sbjct: 874 GCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPN 913



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/131 (27%), Positives = 66/131 (50%), Gaps = 5/131 (3%)

Query: 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
           G  +EA  L   ++ KG+ PDV++++ VI  Y   G+  +  ++  +M   G+ PN+YTY
Sbjct: 683 GRINEAHHLLLLMELKGYTPDVISYSTVINGYCRFGELDKVWKLIEKMKQKGLKPNSYTY 742

Query: 161 AVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
             +I  L          L +A++   EM+G+G+ P+   YT + + F +   +  A    
Sbjct: 743 GSIIGLLCRICK-----LAEAEEAFSEMIGQGILPDTIVYTTLVDGFCKRGDIRAASKFF 797

Query: 221 QQMKAKGFVPD 231
            +M ++   PD
Sbjct: 798 YEMHSRDITPD 808



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/177 (26%), Positives = 79/177 (44%), Gaps = 9/177 (5%)

Query: 75   QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            QEI  +M  +GL    V    + +     G+  +  +L   +  KG  P+      +++ 
Sbjct: 969  QEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQ 1028

Query: 132  YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
            Y      K A  ++  M + GV P+  TY  L+KG       NA+ + +A     EM GK
Sbjct: 1029 YCIRNNLKAATAIYKDMCSRGVEPDGKTYENLVKGHC-----NARNMKEAWFLFQEMKGK 1083

Query: 192  GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFR 248
            G   +  TY+ + + F + +K  EAR +  QM+  G   D K + +   D + +G R
Sbjct: 1084 GFSVSVSTYSVLIKGFFKRKKFVEAREIFDQMRRDGLAAD-KEIFDFFSDTKYKGKR 1139



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 38/158 (24%), Positives = 74/158 (46%), Gaps = 8/158 (5%)

Query: 77   IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
            + + M   G + N V    + D L K+G    A +L  ++   G  P++  + +++    
Sbjct: 866  VHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLC 925

Query: 134  SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             +G  +EA+++     A+G+  +  TY  L+     + +     +  AQ+ L EM+GKG+
Sbjct: 926  KSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGE-----MDKAQEILTEMLGKGL 980

Query: 194  RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +P   T+  +   F     +++   LL  M AKG  P+
Sbjct: 981  QPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPN 1018



 Score = 63.5 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 75/159 (47%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++  KM+ +GL  N+     +   L +     EA + F+++  +G +PD + +T +++ +
Sbjct: 725 KLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPDTIVYTTLVDGF 784

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G  + A + F  M +  + P+  TY  +I G     D     + +A K   EM+ +G
Sbjct: 785 CKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGD-----MVEAGKLFHEMLCRG 839

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + P+  T+T +   + +A  + +A  +   M   G  P+
Sbjct: 840 LEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPN 878


>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/136 (33%), Positives = 70/136 (51%), Gaps = 5/136 (3%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            LS  G   EA +LF ++  KG  PD V +TA+I+ Y   G+ K+A  +  +M+  G+ P
Sbjct: 259 GLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTP 318

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           N  TY  L  GL  + +     L  A + L EM  KG++ N  TY  +     +A  + +
Sbjct: 319 NVVTYTALADGLCKSGE-----LDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQ 373

Query: 216 ARGLLQQMKAKGFVPD 231
           A  L+++MK  G  PD
Sbjct: 374 AVKLMEEMKEAGLHPD 389



 Score = 80.9 bits (198), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 81/154 (52%), Gaps = 5/154 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + ++L + G   EA  L  +++ KG +PDVV++T +I+ Y   G+ ++ +++   M   G
Sbjct: 116 LMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTIIDGYCHVGELQKVVQLVKEMQLKG 175

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN YTY+ +I  L  +     K++ + +K L EM+ +G+ P+   YT + + F +   
Sbjct: 176 LKPNLYTYSSIILLLCKS----GKVV-EGEKVLREMMKRGVFPDHVIYTTLIDGFCKLGN 230

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
              A  L  +M+A+  VPD  A    +    G G
Sbjct: 231 TQAAYKLFSEMEAREIVPDSIAFSALICGLSGSG 264



 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 82/160 (51%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            E+ H+M  +GL  N      + + L K G   +A++L  ++K+ G  PD + +T +++A
Sbjct: 340 NELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDA 399

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y   G+  +A  +   ML  G+ P   T+ VL+ GL  +       L D ++ L  M+ K
Sbjct: 400 YYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGK-----LEDGERLLKWMLEK 454

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G+ PNA TY ++ + +     +  +  + + M A+G VPD
Sbjct: 455 GIMPNAATYNSIMKQYCIRNNMRISTEIYRGMCAQGVVPD 494



 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 74/139 (53%), Gaps = 11/139 (7%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   K G T  A +LF++++ +  +PD +A +A+I   + +G+  EA ++F  M+  G
Sbjct: 221 LIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKG 280

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM---EMVGKGMRPNAGTYTAVFEAFVR 209
             P+  TY  LI       DG  K LG+ +K      +MV  G+ PN  TYTA+ +   +
Sbjct: 281 FEPDEVTYTALI-------DGYCK-LGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCK 332

Query: 210 AQKVDEARGLLQQMKAKGF 228
           + ++D A  LL +M  KG 
Sbjct: 333 SGELDTANELLHEMCRKGL 351



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 77/158 (48%), Gaps = 8/158 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+  +M   GL    V    + + L   G   +  +L   + +KG MP+   + ++++ 
Sbjct: 410 RELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQ 469

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y      + +  ++  M A GV P++ TY +LIKG   A +     + +A     EMV K
Sbjct: 470 YCIRNNMRISTEIYRGMCAQGVVPDSNTYNILIKGHCKARN-----MKEAWFLHKEMVEK 524

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFV 229
                A +Y A+ + F + +K+ EAR L ++M+ +G V
Sbjct: 525 RFNLTASSYNALIKGFFKRKKLLEARQLFEEMRREGLV 562



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 81/193 (41%), Gaps = 26/193 (13%)

Query: 69  TDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEA--------------------LQ 108
           +DP      F  +   GL N A K FD L   G+   A                    L+
Sbjct: 37  SDPHVFDVFFQVLVEAGLLNEARKFFDKLLNYGVALSAGSCNLYLTCLSSKRDMLGMVLK 96

Query: 109 LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
           +F++    G   +  ++  ++ +    G+ +EA  + MRM   G  P+  +Y  +I G  
Sbjct: 97  VFSEFPQLGVCWNTESYNILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTIIDGYC 156

Query: 169 AAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
              +     L    + + EM  KG++PN  TY+++     ++ KV E   +L++M  +G 
Sbjct: 157 HVGE-----LQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGV 211

Query: 229 VPDEKAVKEALID 241
            PD   +   LID
Sbjct: 212 FPDH-VIYTTLID 223


>gi|302767030|ref|XP_002966935.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
 gi|300164926|gb|EFJ31534.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
          Length = 428

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/193 (30%), Positives = 86/193 (44%), Gaps = 17/193 (8%)

Query: 71  PRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           PR+  E+ H M   G   + V    + D L K G    A  L  ++ D G  P+VV +TA
Sbjct: 26  PRHALELLHVMAANGYDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTA 85

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           +I+    A +  +A++   RML SG  P+  TY  LI GL       A  + DA   L E
Sbjct: 86  LIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCM-----ANRMDDAGLVLQE 140

Query: 188 -MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD--------EKAVKEA 238
            M+  G  P+  TY        +A K+D+   +L++M   G  PD            K  
Sbjct: 141 LMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGISPDVVTFCSIISGLCKAN 200

Query: 239 LIDKRGQGFRGVI 251
            ID   Q F+G++
Sbjct: 201 RIDDAFQVFKGML 213



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 77/163 (47%), Gaps = 10/163 (6%)

Query: 74  LQEIFHKMRTEG---LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           ++E+   M   G   L+     +  AL + G    A   + Q  + G + +V  H A I 
Sbjct: 240 VEEVLEHMVKSGHYALSATYAPLIHALIRAGDIESASWAYEQAMEAGCVMEVYTHNAFIG 299

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
           A   +G+   A  + + M+ SG  PN  +Y  +I GL  +  GN     DA K   +M+ 
Sbjct: 300 ALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKS--GNVD---DAWKLSRKMLD 354

Query: 191 KG-MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF-VPD 231
            G  +P+   +  +   F +A ++ +A+ LL++MKAK   VPD
Sbjct: 355 SGCCKPDVIFFNTLISGFCKAGRLSQAQQLLKEMKAKNICVPD 397



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 5/133 (3%)

Query: 97  LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
           L K G   + L++  ++   G  PDVV   ++I     A +  +A +VF  ML  G  P+
Sbjct: 161 LCKAGKLDKGLEMLEEMDRGGISPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPD 220

Query: 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
           + TY++++  L+      A  L   ++ L  MV  G    + TY  +  A +RA  ++ A
Sbjct: 221 SLTYSIMLDNLS-----RANRLDTVEEVLEHMVKSGHYALSATYAPLIHALIRAGDIESA 275

Query: 217 RGLLQQMKAKGFV 229
               +Q    G V
Sbjct: 276 SWAYEQAMEAGCV 288



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 5/111 (4%)

Query: 121 DVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGD 180
           D   +  +I     A + + AL +   M A+G   +  TY  LI GL  + D +A     
Sbjct: 9   DAAIYNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGDLDA----- 63

Query: 181 AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           AQ  L +M   G  PN  TYTA+ +   +A++  +A   +++M   G  PD
Sbjct: 64  AQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPD 114



 Score = 42.7 bits (99), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 78/190 (41%), Gaps = 34/190 (17%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+  +M   G++ + V    +   L K     +A Q+F  + ++G +PD + ++ +++  
Sbjct: 172 EMLEEMDRGGISPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNL 231

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD-------------------- 172
           + A +      V   M+ SG    + TYA LI  L  A D                    
Sbjct: 232 SRANRLDTVEEVLEHMVKSGHYALSATYAPLIHALIRAGDIESASWAYEQAMEAGCVMEV 291

Query: 173 --GNAKI--LGDAQKY------LMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
              NA I  L  + K+      L+ M+  G  PN  +Y  V +   ++  VD+A  L ++
Sbjct: 292 YTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRK 351

Query: 223 MKAKGFV-PD 231
           M   G   PD
Sbjct: 352 MLDSGCCKPD 361


>gi|410109917|gb|AFV61038.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           diamantinensis]
          Length = 284

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 111/234 (47%), Gaps = 15/234 (6%)

Query: 5   AILRWLLHSPSPKRS-LRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKKV 63
           A+   +L +   +RS + + +  + A L+      + +  +  +  + KL  P+D  +KV
Sbjct: 1   AVFAAILETKGTQRSDIYVFSGLITAYLESGFXHDAIECYR--LTREHKLWVPFDTCRKV 58

Query: 64  VDEEPTDPRNLQEI--FHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIKDKG 117
           + E     +  + +  F++   E     ++  F+ L     KDG    A  +F  I   G
Sbjct: 59  L-EHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWG 117

Query: 118 HMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKI 177
             P VV++  ++  Y   G   E  R+   MLASGV P+ Y+Y+VLI GL   +      
Sbjct: 118 LRPSVVSYNTLMNGYXRLGDLDEGFRLKSAMLASGVQPDVYSYSVLINGLCKESK----- 172

Query: 178 LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + DA +   EM+ KG+ PN  T+T + +   +  +VD A  + ++M ++  +PD
Sbjct: 173 MDDANELFDEMLVKGLAPNGVTFTTLIDGHCKKGRVDLAMEIYKRMLSQSLLPD 226



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 62/124 (50%), Gaps = 5/124 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K+    +A +LF ++  KG  P+ V  T +I+ +   G+   A+ ++ RML+  
Sbjct: 163 LINGLCKESKMDDANELFDEMLVKGLAPNGVTFTTLIDGHCKKGRVDLAMEIYKRMLSQS 222

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+  TY  LI GL    D     L  A   + EM  KG++P+  TYT + +   +   
Sbjct: 223 LLPDLITYNTLIYGLCKKGD-----LKQANDLIDEMGMKGLKPDKITYTTLIDGCCKEGN 277

Query: 213 VDEA 216
           +D A
Sbjct: 278 LDTA 281


>gi|414882131|tpg|DAA59262.1| TPA: hypothetical protein ZEAMMB73_845952 [Zea mays]
          Length = 1604

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 10/156 (6%)

Query: 80   KMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
            +M  EG+    V    M   L + GL   A   FA+++  G +PDV+ + +++  Y  AG
Sbjct: 1215 EMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAG 1274

Query: 137  QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD-GNAKILGDAQKYLMEMVGKGMRP 195
              KEAL +F  +  +G+AP   TY +LI G     D   A+IL +      EM  +G  P
Sbjct: 1275 NLKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARILKE------EMGEQGCLP 1328

Query: 196  NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            N  TYT + +  +  + +  AR    +M +KG  PD
Sbjct: 1329 NVCTYTILMKGSLNVRSLAMAREFFDEMLSKGLQPD 1364



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 61/126 (48%), Gaps = 8/126 (6%)

Query: 78   FHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
            F +MR  GL  + +    + +   K G   EAL LF  ++  G  P V+ +  +I+ Y  
Sbjct: 1248 FAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNILIDGYCR 1307

Query: 135  AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
             G  +EA  +   M   G  PN  TY +L+KG       N + L  A+++  EM+ KG++
Sbjct: 1308 LGDLEEARILKEEMGEQGCLPNVCTYTILMKG-----SLNVRSLAMAREFFDEMLSKGLQ 1362

Query: 195  PNAGTY 200
            P+   Y
Sbjct: 1363 PDCFAY 1368



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 13/135 (9%)

Query: 101  GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
            G   +   L  +++++G MP VV + A+I     +G  + A   F  M A G+ P+  TY
Sbjct: 1204 GCVKKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITY 1263

Query: 161  AVLIKGLAAAADGNAK----ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
              L+ G   A  GN K    + GD ++        G+ P   TY  + + + R   ++EA
Sbjct: 1264 NSLLNGYCKA--GNLKEALLLFGDLRR-------AGLAPTVLTYNILIDGYCRLGDLEEA 1314

Query: 217  RGLLQQMKAKGFVPD 231
            R L ++M  +G +P+
Sbjct: 1315 RILKEEMGEQGCLPN 1329



 Score = 46.2 bits (108), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 50/127 (39%), Gaps = 7/127 (5%)

Query: 100  DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYT 159
            D  +   L  F ++   G  PDV     V+     A +  +   V   ML  G+ P+  T
Sbjct: 1062 DTCSTLCLSAFREMASHGVAPDVKDCNRVLRVLRDAARWDDICAVHEEMLELGIEPSIVT 1121

Query: 160  YAVLIKGLAAAA--DGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
            Y  L+         D  A +L +     ME  G G  PN  TY  V     R   ++EA 
Sbjct: 1122 YNTLLDSFLKEGRKDKVAMLLKE-----METRGSGCLPNDVTYNVVITGLTRKGDLEEAA 1176

Query: 218  GLLQQMK 224
             L++ M+
Sbjct: 1177 ELVEGMR 1183


>gi|326506436|dbj|BAJ86536.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 616

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 69/139 (49%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   ++GL    ++L  Q+ + G +PDV+ +T VI  +   G   EA+ +   M A G
Sbjct: 334 LVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACG 393

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN  +Y +++KGL       A+   DAQ+ +  M+ +G  PN  T+  +     +   
Sbjct: 394 CKPNTISYTIVLKGLC-----RAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGL 448

Query: 213 VDEARGLLQQMKAKGFVPD 231
            ++A  LL+QM   G  PD
Sbjct: 449 AEQAIELLKQMLVNGCSPD 467



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 80/180 (44%), Gaps = 11/180 (6%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           QE+   M  +G   N V    + + + K GL  +A++L  Q+   G  PD+++++ VI+ 
Sbjct: 418 QELISHMIQQGCLPNPVTFNTLINFMCKKGLAEQAIELLKQMLVNGCSPDLISYSTVIDG 477

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              AG+ +EAL +   M+  G+ PN   Y+ +   L+     +  I     +    +   
Sbjct: 478 LGKAGKTEEALELLNVMINKGITPNTIIYSSMASALSREGRTDKII-----QMFDSIQDA 532

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVI 251
            +R +A  Y AV  +  +  + D A      M + G +P+E       I  RG    G++
Sbjct: 533 TVRSDAALYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYT---ILIRGLASEGLV 589



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 14/174 (8%)

Query: 24  NTRVNATLQRSLSSSSDQPTKK-YVNTKSKLPPPYDPFKKVVDE--EPTDPRNLQEIFHK 80
           NT +N   ++ L+  + +  K+  VN  S   P    +  V+D   +        E+ + 
Sbjct: 437 NTLINFMCKKGLAEQAIELLKQMLVNGCS---PDLISYSTVIDGLGKAGKTEEALELLNV 493

Query: 81  MRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ 137
           M  +G+T N +    M  ALS++G T + +Q+F  I+D     D   + AVI +     +
Sbjct: 494 MINKGITPNTIIYSSMASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVISSLCKRWE 553

Query: 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              A+  F  M+++G  PN  TY +LI+GLA+       ++ +AQ  L E+  +
Sbjct: 554 TDRAIDFFAYMVSNGCMPNESTYTILIRGLASEG-----LVREAQDLLSELCSR 602



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 65/159 (40%), Gaps = 33/159 (20%)

Query: 103 THEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAV 162
            HEAL   +Q+ + G  PD+  +  +I+     G  + A  +  RM + G+ PN   Y  
Sbjct: 242 VHEAL---SQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNT 298

Query: 163 LIKGLAAAA--------------------DGNAKILGD----------AQKYLMEMVGKG 192
           ++KGL +A                     D    IL D            + L +M+  G
Sbjct: 299 VLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHG 358

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             P+  TYT V   F +   VDEA  LL+ M A G  P+
Sbjct: 359 CIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPN 397



 Score = 41.2 bits (95), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 49/115 (42%), Gaps = 8/115 (6%)

Query: 117 GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK 176
           G    VVA+ A+I  Y  AGQ   A R+   +    V PNAYTY  +++ L A       
Sbjct: 71  GDAAGVVAYNAMIAGYCRAGQVAAARRLAAAV---PVPPNAYTYFPIVRSLCARG----- 122

Query: 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           ++ DA   L EM  +G          + EA  R      A   LQ + AKG   D
Sbjct: 123 LIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGFRSAVRALQVLHAKGCTLD 177


>gi|225437663|ref|XP_002279193.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g02420-like [Vitis vinifera]
          Length = 526

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 76/162 (46%), Gaps = 8/162 (4%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
            F +MR  G+  + V    + D   K      A ++  +++D+   PDV+++T++I    
Sbjct: 250 FFDEMREMGVEPDVVSYNCLIDVYCKGREIERAYKVIDKMRDEQISPDVISYTSIIGGLG 309

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             GQ  +A  V   M   G  P+   Y   I+    A       LGDA   + EMVGKG+
Sbjct: 310 LVGQPDKARDVLKEMKEYGCYPDVAAYNAAIRNFCIANR-----LGDADGLMDEMVGKGL 364

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAV 235
            PNA TY   F  F  +  +  + GL Q+MK  G +P+ ++ 
Sbjct: 365 SPNATTYNLFFRCFYWSNDLGRSCGLYQRMKKTGCLPNTQSC 406



 Score = 42.7 bits (99), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 63/142 (44%), Gaps = 12/142 (8%)

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
           PD+     ++  + SA   +EA   F  M   GV P+  +Y  LI       +     + 
Sbjct: 229 PDLRTFNILLSGWKSA---EEAEGFFDEMREMGVEPDVVSYNCLIDVYCKGRE-----IE 280

Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD----EKAV 235
            A K + +M  + + P+  +YT++        + D+AR +L++MK  G  PD      A+
Sbjct: 281 RAYKVIDKMRDEQISPDVISYTSIIGGLGLVGQPDKARDVLKEMKEYGCYPDVAAYNAAI 340

Query: 236 KEALIDKRGQGFRGVINILFGK 257
           +   I  R     G+++ + GK
Sbjct: 341 RNFCIANRLGDADGLMDEMVGK 362


>gi|410109949|gb|AFV61054.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           turbinata]
          Length = 413

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 113/237 (47%), Gaps = 15/237 (6%)

Query: 2   AATAILRWLLHSPSPKRS-LRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPF 60
           +A+ +   +L +   +RS + + +  + A L+      + +  +  +  + KL  P+D  
Sbjct: 35  SASVVFATILETKGTQRSDIYVFSGLITAYLESGFLRDAIECYR--LTREHKLWVPFDTC 92

Query: 61  KKVVDEEPTDPRNLQEI--FHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIK 114
           +K++ E     R  + +  F++   E     ++  F+ L     KDG    A  +F  I 
Sbjct: 93  RKML-EHLMKLRYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAIT 151

Query: 115 DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174
             G  P VV++  ++  Y   G   E  R+   MLA+GV P+ YTY+VLI GL   +   
Sbjct: 152 KWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLANGVQPDVYTYSVLINGLCKESK-- 209

Query: 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              + DA +   EM+ KG+ PN  T+T + +   +  +VD A  + ++M ++  +PD
Sbjct: 210 ---MDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPD 263



 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 86/201 (42%), Gaps = 35/201 (17%)

Query: 63  VVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM 119
           +  E   D  N  E+F +M  +GL  N V    + D   K+G    A++++ ++  +  +
Sbjct: 204 LCKESKMDDAN--ELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLL 261

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN----- 174
           PD++ +  +I      G  K+A  +   M   G+ P+ +TY  LI G     D +     
Sbjct: 262 PDLITYNTLIYGLCKNGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFKH 321

Query: 175 -----------------AKILG--------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
                            A I G        DA+K L EM+  G++P+ GTYT +   F +
Sbjct: 322 RKRMIQENIRLDDVAYTALISGLCQEGQSVDAEKMLREMLSVGLKPDIGTYTMIINEFCK 381

Query: 210 AQKVDEARGLLQQMKAKGFVP 230
              V +   LL++M+  G  P
Sbjct: 382 KGDVWKGSKLLKEMQRNGHAP 402



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 5/124 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K+    +A +LF ++  KG +P+ V  T +I+ +   G+   A+ ++ RML+  
Sbjct: 200 LINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQS 259

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+  TY  LI GL    D     L  A   + EM  KG++P+  TYT + +   +   
Sbjct: 260 LLPDLITYNTLIYGLCKNGD-----LKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGD 314

Query: 213 VDEA 216
           +D A
Sbjct: 315 LDTA 318


>gi|225447826|ref|XP_002268129.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
           mitochondrial-like [Vitis vinifera]
          Length = 679

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 73/136 (53%), Gaps = 6/136 (4%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA + + ++ DKG  PD++AH  ++E      +  +A+++F  M A G +PN  TY +LI
Sbjct: 390 EAGRTWNEMIDKGFKPDIIAHHTMLEGLLKCKKKSDAIKLFEVMKAKGPSPNVRTYTILI 449

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           + L          + +A +Y  EMV  G +P+A  YT +   F   +K+D+   LL++MK
Sbjct: 450 RDLCKQMK-----MQEAVEYFDEMVDSGCQPDAAVYTCLITGFGNQKKMDKVYALLKEMK 504

Query: 225 AKGFVPDEKAVKEALI 240
            KG  P +     ALI
Sbjct: 505 EKG-CPADGRTYNALI 519



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 5/135 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M + L K     +A++LF  +K KG  P+V  +T +I       + +EA+  F  M+ SG
Sbjct: 413 MLEGLLKCKKKSDAIKLFEVMKAKGPSPNVRTYTILIRDLCKQMKMQEAVEYFDEMVDSG 472

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+A  Y  LI G      GN K +      L EM  KG   +  TY A+ +     Q 
Sbjct: 473 CQPDAAVYTCLITGF-----GNQKKMDKVYALLKEMKEKGCPADGRTYNALIKLMTNRQM 527

Query: 213 VDEARGLLQQMKAKG 227
            D+A  + ++M   G
Sbjct: 528 PDDAVRIYKKMIQNG 542



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 6/106 (5%)

Query: 126 TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185
             +++    A  GKEA  +F + L     PN  TY VL+ G         K L +A +  
Sbjct: 342 NCLLDNLGRAKLGKEAQALFEK-LEDRFTPNLRTYTVLLNGWC-----RIKNLVEAGRTW 395

Query: 186 MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            EM+ KG +P+   +  + E  ++ +K  +A  L + MKAKG  P+
Sbjct: 396 NEMIDKGFKPDIIAHHTMLEGLLKCKKKSDAIKLFEVMKAKGPSPN 441



 Score = 44.3 bits (103), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 65/149 (43%), Gaps = 30/149 (20%)

Query: 109 LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK--- 165
           L  ++K+KG   D   + A+I+   +     +A+R++ +M+ +G+    +TY +++K   
Sbjct: 499 LLKEMKEKGCPADGRTYNALIKLMTNRQMPDDAVRIYKKMIQNGIQSTLHTYNMMMKSYF 558

Query: 166 -------GLA---------AAADGNAKIL-----------GDAQKYLMEMVGKGMRPNAG 198
                  G A            D N+ I+            +A +YL EM+ KGM+    
Sbjct: 559 YTRNYEMGCAVWEEMGRKGCCPDDNSYIVFIGGLIRHGRSEEACRYLEEMIEKGMKAPQL 618

Query: 199 TYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
            Y      F RA K D    L ++MK +G
Sbjct: 619 DYNKFAADFSRAGKPDILEELARKMKFEG 647


>gi|18424537|ref|NP_568948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170898|sp|Q9FIT7.1|PP442_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g61990, mitochondrial; Flags: Precursor
 gi|10176917|dbj|BAB10161.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010163|gb|AED97546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 974

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/157 (28%), Positives = 82/157 (52%), Gaps = 8/157 (5%)

Query: 78  FHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           +  M  +G+  +A     + + L K+    +A ++F +++ KG  PDV ++  +I  ++ 
Sbjct: 580 YRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSK 639

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            G  ++A  +F  M+  G+ PN   Y +L+ G   + +     +  A++ L EM  KG+ 
Sbjct: 640 LGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGE-----IEKAKELLDEMSVKGLH 694

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           PNA TY  + + + ++  + EA  L  +MK KG VPD
Sbjct: 695 PNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPD 731



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 43/159 (27%), Positives = 80/159 (50%), Gaps = 10/159 (6%)

Query: 77  IFHKMRTEGLTNNAVKMFD----ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           + H+M + G+ N    M+D     +SK+G+  +A  LF  +   G +P   A+ ++IE Y
Sbjct: 334 LVHEMVSHGI-NIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGY 392

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
                 ++   + + M    +  + YTY  ++KG+ ++ D     L  A   + EM+  G
Sbjct: 393 CREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGD-----LDGAYNIVKEMIASG 447

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            RPN   YT + + F++  +  +A  +L++MK +G  PD
Sbjct: 448 CRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPD 486



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 38/127 (29%), Positives = 70/127 (55%), Gaps = 5/127 (3%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A  +  ++   G  P+VV +T +I+ +    +  +A+RV   M   G+AP+ + Y  LI 
Sbjct: 436 AYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLII 495

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           GL+      AK + +A+ +L+EMV  G++PNA TY A    ++ A +   A   +++M+ 
Sbjct: 496 GLS-----KAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRE 550

Query: 226 KGFVPDE 232
            G +P++
Sbjct: 551 CGVLPNK 557



 Score = 70.1 bits (170), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 14/158 (8%)

Query: 80  KMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           +MR  G+  N V    + +   K G   EA   +  + D+G + D   +T ++       
Sbjct: 547 EMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKND 606

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQK---YLMEMVGKGM 193
           +  +A  +F  M   G+AP+ ++Y VLI G +         LG+ QK      EMV +G+
Sbjct: 607 KVDDAEEIFREMRGKGIAPDVFSYGVLINGFSK--------LGNMQKASSIFDEMVEEGL 658

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            PN   Y  +   F R+ ++++A+ LL +M  KG  P+
Sbjct: 659 TPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPN 696



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 40/162 (24%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +A+++  ++K++G  PD+  + ++I   + A +  EA    + M+ +G+ PNA+TY   I
Sbjct: 470 DAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFI 529

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPN---------------------------- 196
            G   A++        A KY+ EM   G+ PN                            
Sbjct: 530 SGYIEASE-----FASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMV 584

Query: 197 -------AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
                  A TYT +     +  KVD+A  + ++M+ KG  PD
Sbjct: 585 DQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPD 626



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 40/148 (27%), Positives = 72/148 (48%), Gaps = 2/148 (1%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M D L K+G    A +LF Q+++   MP V+ +T+++  Y   G+  E   VF   +A+G
Sbjct: 811 MIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAG 870

Query: 153 VAPNAYTYAVLIKG-LAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           + P+   Y+V+I   L       A +L D Q +    V  G + +  T  A+   F +  
Sbjct: 871 IEPDHIMYSVIINAFLKEGMTTKALVLVD-QMFAKNAVDDGCKLSISTCRALLSGFAKVG 929

Query: 212 KVDEARGLLQQMKAKGFVPDEKAVKEAL 239
           +++ A  +++ M    ++PD   V E +
Sbjct: 930 EMEVAEKVMENMVRLQYIPDSATVIELI 957



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 5/87 (5%)

Query: 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTY 200
           AL++   M+  G+ P  YTY VLI GL        K L DA+  L+EM   G+  +  TY
Sbjct: 261 ALKLKESMICKGLVPLKYTYDVLIDGLC-----KIKRLEDAKSLLVEMDSLGVSLDNHTY 315

Query: 201 TAVFEAFVRAQKVDEARGLLQQMKAKG 227
           + + +  ++ +  D A+GL+ +M + G
Sbjct: 316 SLLIDGLLKGRNADAAKGLVHEMVSHG 342



 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 13/163 (7%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+  +M  +GL  NAV    + D   K G   EA +LF ++K KG +PD   +T +++ 
Sbjct: 682 KELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDG 741

Query: 132 YASAGQGKEALRVF---MRMLASGVAP-NAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
                  + A+ +F    +  AS  AP NA    V   G     +   ++L        +
Sbjct: 742 CCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFG---KTELKTEVLNRLMDGSFD 798

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
             GK   PN  TY  + +   +   ++ A+ L  QM+    +P
Sbjct: 799 RFGK---PNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMP 838



 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 5/129 (3%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           AL+L   +  KG +P    +  +I+      + ++A  + + M + GV+ + +TY++LI 
Sbjct: 261 ALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLID 320

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           GL    + +A     A+  + EMV  G+      Y        +   +++A+ L   M A
Sbjct: 321 GLLKGRNADA-----AKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIA 375

Query: 226 KGFVPDEKA 234
            G +P  +A
Sbjct: 376 SGLIPQAQA 384


>gi|30794106|gb|AAP40495.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/157 (28%), Positives = 82/157 (52%), Gaps = 8/157 (5%)

Query: 78  FHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           +  M  +G+  +A     + + L K+    +A ++F +++ KG  PDV ++  +I  ++ 
Sbjct: 580 YRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSK 639

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            G  ++A  +F  M+  G+ PN   Y +L+ G   + +     +  A++ L EM  KG+ 
Sbjct: 640 LGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGE-----IEKAKELLDEMSVKGLH 694

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           PNA TY  + + + ++  + EA  L  +MK KG VPD
Sbjct: 695 PNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPD 731



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 43/159 (27%), Positives = 80/159 (50%), Gaps = 10/159 (6%)

Query: 77  IFHKMRTEGLTNNAVKMFD----ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           + H+M + G+ N    M+D     +SK+G+  +A  LF  +   G +P   A+ ++IE Y
Sbjct: 334 LVHEMVSHGI-NIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGY 392

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
                 ++   + + M    +  + YTY  ++KG+ ++ D     L  A   + EM+  G
Sbjct: 393 CREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGD-----LDGAYNIVKEMIASG 447

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            RPN   YT + + F++  +  +A  +L++MK +G  PD
Sbjct: 448 CRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPD 486



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 38/127 (29%), Positives = 70/127 (55%), Gaps = 5/127 (3%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A  +  ++   G  P+VV +T +I+ +    +  +A+RV   M   G+AP+ + Y  LI 
Sbjct: 436 AYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLII 495

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           GL+      AK + +A+ +L+EMV  G++PNA TY A    ++ A +   A   +++M+ 
Sbjct: 496 GLS-----KAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRE 550

Query: 226 KGFVPDE 232
            G +P++
Sbjct: 551 CGVLPNK 557



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 40/162 (24%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +A+++  ++K++G  PD+  + ++I   + A +  EA    + M+ +G+ PNA+TY   I
Sbjct: 470 DAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFI 529

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPN---------------------------- 196
            G   A++        A KY+ EM   G+ PN                            
Sbjct: 530 SGYIEASE-----FASADKYVKEMRECGVLPNKVLCTGLINEYCKKEKVIEACSAYRSMV 584

Query: 197 -------AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
                  A TYT +     +  KVD+A  + ++M+ KG  PD
Sbjct: 585 DQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPD 626



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 40/148 (27%), Positives = 72/148 (48%), Gaps = 2/148 (1%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M D L K+G    A +LF Q+++   MP V+ +T+++  Y   G+  E   VF   +A+G
Sbjct: 811 MIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAG 870

Query: 153 VAPNAYTYAVLIKG-LAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           + P+   Y+V+I   L       A +L D Q +    V  G + +  T  A+   F +  
Sbjct: 871 IEPDHIMYSVIINAFLKEGMTTKALVLVD-QMFAKNAVDDGCKLSISTCRALLSGFAKVG 929

Query: 212 KVDEARGLLQQMKAKGFVPDEKAVKEAL 239
           +++ A  +++ M    ++PD   V E +
Sbjct: 930 EMEVAEKVMENMVRLQYIPDSATVIELI 957



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 43/158 (27%), Positives = 74/158 (46%), Gaps = 14/158 (8%)

Query: 80  KMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           +MR  G+  N V    + +   K     EA   +  + D+G + D   +T ++       
Sbjct: 547 EMRECGVLPNKVLCTGLINEYCKKEKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKND 606

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQK---YLMEMVGKGM 193
           +  +A  +F  M   G+AP+ ++Y VLI G +         LG+ QK      EMV +G+
Sbjct: 607 KVDDAEEIFREMRGKGIAPDVFSYGVLINGFSK--------LGNMQKASSIFDEMVEEGL 658

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            PN   Y  +   F R+ ++++A+ LL +M  KG  P+
Sbjct: 659 TPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPN 696



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 5/87 (5%)

Query: 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTY 200
           AL++   M+  G+ P  YTY VLI GL        K L DA+  L+EM   G+  +  TY
Sbjct: 261 ALKLKESMICKGLVPLKYTYDVLIDGLC-----KIKRLEDAKSLLVEMDSLGVSLDNHTY 315

Query: 201 TAVFEAFVRAQKVDEARGLLQQMKAKG 227
           + + +  ++ +  D A+GL+ +M + G
Sbjct: 316 SLLIDGLLKGRNADAAKGLVHEMVSHG 342



 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 13/163 (7%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+  +M  +GL  NAV    + D   K G   EA +LF ++K KG +PD   +T +++ 
Sbjct: 682 KELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDG 741

Query: 132 YASAGQGKEALRVF---MRMLASGVAP-NAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
                  + A+ +F    +  AS  AP NA    V   G     +   ++L        +
Sbjct: 742 CCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFG---KTELKTEVLNRLMDGSFD 798

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
             GK   PN  TY  + +   +   ++ A+ L  QM+    +P
Sbjct: 799 RFGK---PNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMP 838



 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 5/129 (3%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           AL+L   +  KG +P    +  +I+      + ++A  + + M + GV+ + +TY++LI 
Sbjct: 261 ALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLID 320

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           GL    + +A     A+  + EMV  G+      Y        +   +++A+ L   M A
Sbjct: 321 GLLKGRNADA-----AKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIA 375

Query: 226 KGFVPDEKA 234
            G +P  +A
Sbjct: 376 SGLIPQAQA 384


>gi|14532710|gb|AAK64156.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/157 (28%), Positives = 82/157 (52%), Gaps = 8/157 (5%)

Query: 78  FHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           +  M  +G+  +A     + + L K+    +A ++F +++ KG  PDV ++  +I  ++ 
Sbjct: 580 YRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSK 639

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            G  ++A  +F  M+  G+ PN   Y +L+ G   + +     +  A++ L EM  KG+ 
Sbjct: 640 LGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGE-----IEKAKELLDEMSVKGLH 694

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           PNA TY  + + + ++  + EA  L  +MK KG VPD
Sbjct: 695 PNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPD 731



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 43/159 (27%), Positives = 80/159 (50%), Gaps = 10/159 (6%)

Query: 77  IFHKMRTEGLTNNAVKMFD----ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           + H+M + G+ N    M+D     +SK+G+  +A  LF  +   G +P   A+ ++IE Y
Sbjct: 334 LVHEMVSHGI-NIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGY 392

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
                 ++   + + M    +  + YTY  ++KG+ ++ D     L  A   + EM+  G
Sbjct: 393 CREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGD-----LDGAYNIVKEMIASG 447

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            RPN   YT + + F++  +  +A  +L++MK +G  PD
Sbjct: 448 CRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPD 486



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 38/127 (29%), Positives = 70/127 (55%), Gaps = 5/127 (3%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A  +  ++   G  P+VV +T +I+ +    +  +A+RV   M   G+AP+ + Y  LI 
Sbjct: 436 AYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLII 495

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           GL+      AK + +A+ +L+EMV  G++PNA TY A    ++ A +   A   +++M+ 
Sbjct: 496 GLS-----KAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRE 550

Query: 226 KGFVPDE 232
            G +P++
Sbjct: 551 CGVLPNK 557



 Score = 70.1 bits (170), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 14/158 (8%)

Query: 80  KMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           +MR  G+  N V    + +   K G   EA   +  + D+G + D   +T ++       
Sbjct: 547 EMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKND 606

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQK---YLMEMVGKGM 193
           +  +A  +F  M   G+AP+ ++Y VLI G +         LG+ QK      EMV +G+
Sbjct: 607 KVDDAEEIFREMRGKGIAPDVFSYGVLINGFSK--------LGNMQKASSIFDEMVEEGL 658

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            PN   Y  +   F R+ ++++A+ LL +M  KG  P+
Sbjct: 659 TPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPN 696



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 40/162 (24%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +A+++  ++K++G  PD+  + ++I   + A +  EA    + M+ +G+ PNA+TY   I
Sbjct: 470 DAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFI 529

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPN---------------------------- 196
            G   A++        A KY+ EM   G+ PN                            
Sbjct: 530 SGYIEASE-----FASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMV 584

Query: 197 -------AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
                  A TYT +     +  KVD+A  + ++M+ KG  PD
Sbjct: 585 DQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPD 626



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 40/148 (27%), Positives = 72/148 (48%), Gaps = 2/148 (1%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M D L K+G    A +LF Q+++   MP V+ +T+++  Y   G+  E   VF   +A+G
Sbjct: 811 MIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAG 870

Query: 153 VAPNAYTYAVLIKG-LAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           + P+   Y+V+I   L       A +L D Q +    V  G + +  T  A+   F +  
Sbjct: 871 IEPDHIMYSVIINAFLKEGMTTKALVLVD-QMFAKNAVDDGCKLSISTCRALLSGFAKVG 929

Query: 212 KVDEARGLLQQMKAKGFVPDEKAVKEAL 239
           +++ A  +++ M    ++PD   V E +
Sbjct: 930 EMEVAEKVMENMVRLQYIPDSATVIELI 957



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 5/87 (5%)

Query: 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTY 200
           AL++   M+  G+ P  YTY VLI GL        K L DA+  L+EM   G+  +  TY
Sbjct: 261 ALKLKESMICKGLVPLKYTYDVLIDGLC-----KIKRLEDAKSLLVEMDSLGVSLDNHTY 315

Query: 201 TAVFEAFVRAQKVDEARGLLQQMKAKG 227
           + + +  ++ +  D A+GL+ +M + G
Sbjct: 316 SLLIDGLLKGRNADAAKGLVHEMVSHG 342



 Score = 48.5 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 13/163 (7%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+  +M  +GL  NAV    + D   K G   EA +LF ++K KG +PD   +T +++ 
Sbjct: 682 KELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDG 741

Query: 132 YASAGQGKEALRVF---MRMLASGVAP-NAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
                  + A+ +F    +  AS  AP NA    V   G     +   ++L        +
Sbjct: 742 CCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFG---KTELKTEVLNRLMDGSFD 798

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
             GK   PN  TY  + +   +   ++ A+ L  QM+    +P
Sbjct: 799 RFGK---PNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMP 838



 Score = 43.1 bits (100), Expect = 0.12,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 5/129 (3%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           AL+L   +  KG +P    +  +I+      + ++A  + + M + GV+ + +TY++LI 
Sbjct: 261 ALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLID 320

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           GL    + +A     A+  + EMV  G+      Y        +   +++A+ L   M A
Sbjct: 321 GLLKGRNADA-----AKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIA 375

Query: 226 KGFVPDEKA 234
            G +P  +A
Sbjct: 376 SGLIPQAQA 384


>gi|297725689|ref|NP_001175208.1| Os07g0491500 [Oryza sativa Japonica Group]
 gi|255677777|dbj|BAH93936.1| Os07g0491500, partial [Oryza sativa Japonica Group]
          Length = 654

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 87/170 (51%), Gaps = 11/170 (6%)

Query: 77  IFHKMRTEGLTNNA-----VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +F +M   G+ N+      V +  AL KDG   E + +F ++  +G   +   +TA+I++
Sbjct: 312 LFQEMEERGMGNDIPQHAYVLVIGALCKDGKPFEGMAVFERMLKRGCAANAAIYTALIDS 371

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G+ KEA+ +F RM  SG+  ++ TY V++  L          L +A         K
Sbjct: 372 MGKFGREKEAMALFERMKDSGLKLDSVTYGVIVNCLCRFGK-----LDEAVACFRSCQEK 426

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           G+  NA  YT++ + F +A  VD+++ L ++M AKGFVPD       LID
Sbjct: 427 GIAVNAIFYTSLIDGFGKAGMVDQSKELFEEMIAKGFVPDSYCYN-VLID 475



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 75/163 (46%), Gaps = 8/163 (4%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M+  GL  ++V    + + L + G   EA+  F   ++KG   + + +T++I+ + 
Sbjct: 384 LFERMKDSGLKLDSVTYGVIVNCLCRFGKLDEAVACFRSCQEKGIAVNAIFYTSLIDGFG 443

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG   ++  +F  M+A G  P++Y Y VLI GLA +       + DA      M   G 
Sbjct: 444 KAGMVDQSKELFEEMIAKGFVPDSYCYNVLIDGLAKSGR-----MDDACALYKRMEDDGC 498

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK 236
                TYT + +   +  K +EA      M  KG  P   A +
Sbjct: 499 DQTVYTYTILIDGLFKEHKNEEALKFWDAMIDKGITPTAAAFR 541



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 72/158 (45%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
            F   + +G+  NA+    + D   K G+  ++ +LF ++  KG +PD   +  +I+  A
Sbjct: 419 CFRSCQEKGIAVNAIFYTSLIDGFGKAGMVDQSKELFEEMIAKGFVPDSYCYNVLIDGLA 478

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            +G+  +A  ++ RM   G     YTY +LI GL            +A K+   M+ KG+
Sbjct: 479 KSGRMDDACALYKRMEDDGCDQTVYTYTILIDGLFKEHKNE-----EALKFWDAMIDKGI 533

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            P A  +  +      + K   A  +L ++   G +P+
Sbjct: 534 TPTAAAFRTLASGLCLSGKFSRACRILDELAPMGVIPE 571



 Score = 45.1 bits (105), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 68/156 (43%), Gaps = 9/156 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+F +M  +G   ++     + D L+K G   +A  L+ +++D G    V  +T +I+ 
Sbjct: 452 KELFEEMIAKGFVPDSYCYNVLIDGLAKSGRMDDACALYKRMEDDGCDQTVYTYTILIDG 511

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
                + +EAL+ +  M+  G+ P A  +  L  GL  +          A + L E+   
Sbjct: 512 LFKEHKNEEALKFWDAMIDKGITPTAAAFRTLASGLCLSGK-----FSRACRILDELAPM 566

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
           G+ P    +  +     +A +  +A  L   +  KG
Sbjct: 567 GVIPETA-HEDMINVLCKAGRFKQACKLADGIVQKG 601



 Score = 43.1 bits (100), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 22/163 (13%)

Query: 85  GLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRV 144
           GL + AV +FDA+S +           Q++     PDVV++  +I+ Y  AG+  +A+  
Sbjct: 232 GLLDTAVNVFDAMSTED----------QVR-----PDVVSYNILIKGYCRAGRAHDAMAR 276

Query: 145 FMRMLASG-VAPNAYTYAVLIKGLAAAADGNAKI-LGDAQKYLMEMVGKGMRPNAGTYTA 202
              M     + P+  TY  L++     ++G   + +G  Q+  ME  G G       Y  
Sbjct: 277 LSEMQEQAKLTPDKVTYLTLMQ--CHYSEGTFPVCIGLFQE--MEERGMGNDIPQHAYVL 332

Query: 203 VFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
           V  A  +  K  E   + ++M  +G   +  A+  ALID  G+
Sbjct: 333 VIGALCKDGKPFEGMAVFERMLKRGCAAN-AAIYTALIDSMGK 374


>gi|34393621|dbj|BAC83297.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 657

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 87/170 (51%), Gaps = 11/170 (6%)

Query: 77  IFHKMRTEGLTNNA-----VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +F +M   G+ N+      V +  AL KDG   E + +F ++  +G   +   +TA+I++
Sbjct: 315 LFQEMEERGMGNDIPQHAYVLVIGALCKDGKPFEGMAVFERMLKRGCAANAAIYTALIDS 374

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G+ KEA+ +F RM  SG+  ++ TY V++  L          L +A         K
Sbjct: 375 MGKFGREKEAMALFERMKDSGLKLDSVTYGVIVNCLCRFGK-----LDEAVACFRSCQEK 429

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           G+  NA  YT++ + F +A  VD+++ L ++M AKGFVPD       LID
Sbjct: 430 GIAVNAIFYTSLIDGFGKAGMVDQSKELFEEMIAKGFVPDSYCYN-VLID 478



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 75/163 (46%), Gaps = 8/163 (4%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M+  GL  ++V    + + L + G   EA+  F   ++KG   + + +T++I+ + 
Sbjct: 387 LFERMKDSGLKLDSVTYGVIVNCLCRFGKLDEAVACFRSCQEKGIAVNAIFYTSLIDGFG 446

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG   ++  +F  M+A G  P++Y Y VLI GLA +       + DA      M   G 
Sbjct: 447 KAGMVDQSKELFEEMIAKGFVPDSYCYNVLIDGLAKSGR-----MDDACALYKRMEDDGC 501

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK 236
                TYT + +   +  K +EA      M  KG  P   A +
Sbjct: 502 DQTVYTYTILIDGLFKEHKNEEALKFWDAMIDKGITPTAAAFR 544



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 72/158 (45%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
            F   + +G+  NA+    + D   K G+  ++ +LF ++  KG +PD   +  +I+  A
Sbjct: 422 CFRSCQEKGIAVNAIFYTSLIDGFGKAGMVDQSKELFEEMIAKGFVPDSYCYNVLIDGLA 481

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            +G+  +A  ++ RM   G     YTY +LI GL            +A K+   M+ KG+
Sbjct: 482 KSGRMDDACALYKRMEDDGCDQTVYTYTILIDGLFKEHKNE-----EALKFWDAMIDKGI 536

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            P A  +  +      + K   A  +L ++   G +P+
Sbjct: 537 TPTAAAFRTLASGLCLSGKFSRACRILDELAPMGVIPE 574



 Score = 45.1 bits (105), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 68/156 (43%), Gaps = 9/156 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+F +M  +G   ++     + D L+K G   +A  L+ +++D G    V  +T +I+ 
Sbjct: 455 KELFEEMIAKGFVPDSYCYNVLIDGLAKSGRMDDACALYKRMEDDGCDQTVYTYTILIDG 514

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
                + +EAL+ +  M+  G+ P A  +  L  GL  +          A + L E+   
Sbjct: 515 LFKEHKNEEALKFWDAMIDKGITPTAAAFRTLASGLCLSGK-----FSRACRILDELAPM 569

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
           G+ P    +  +     +A +  +A  L   +  KG
Sbjct: 570 GVIPETA-HEDMINVLCKAGRFKQACKLADGIVQKG 604



 Score = 43.1 bits (100), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 22/163 (13%)

Query: 85  GLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRV 144
           GL + AV +FDA+S +           Q++     PDVV++  +I+ Y  AG+  +A+  
Sbjct: 235 GLLDTAVNVFDAMSTED----------QVR-----PDVVSYNILIKGYCRAGRAHDAMAR 279

Query: 145 FMRMLASG-VAPNAYTYAVLIKGLAAAADGNAKI-LGDAQKYLMEMVGKGMRPNAGTYTA 202
              M     + P+  TY  L++     ++G   + +G  Q+  ME  G G       Y  
Sbjct: 280 LSEMQEQAKLTPDKVTYLTLMQ--CHYSEGTFPVCIGLFQE--MEERGMGNDIPQHAYVL 335

Query: 203 VFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
           V  A  +  K  E   + ++M  +G   +  A+  ALID  G+
Sbjct: 336 VIGALCKDGKPFEGMAVFERMLKRGCAAN-AAIYTALIDSMGK 377


>gi|15242557|ref|NP_195906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181167|sp|Q9LYZ9.1|PP362_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g02860
 gi|7413561|emb|CAB86040.1| putative protein [Arabidopsis thaliana]
 gi|332003145|gb|AED90528.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 819

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 87/165 (52%), Gaps = 9/165 (5%)

Query: 71  PRN-LQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           P N +  +  KM+++G+  +A     +     +  L  EA Q+F ++K  G   D V + 
Sbjct: 259 PWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYN 318

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
           A+++ Y  + + KEA++V   M+ +G +P+  TY  LI   A A DG   +L +A +   
Sbjct: 319 ALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLIS--AYARDG---MLDEAMELKN 373

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +M  KG +P+  TYT +   F RA KV+ A  + ++M+  G  P+
Sbjct: 374 QMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPN 418



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 81/166 (48%), Gaps = 8/166 (4%)

Query: 71  PRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P+   ++ ++M   G + + V    +  A ++DG+  EA++L  Q+ +KG  PDV  +T 
Sbjct: 330 PKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTT 389

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           ++  +  AG+ + A+ +F  M  +G  PN  T+   IK       GN     +  K   E
Sbjct: 390 LLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMY-----GNRGKFTEMMKIFDE 444

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK 233
           +   G+ P+  T+  +   F +     E  G+ ++MK  GFVP+ +
Sbjct: 445 INVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERE 490



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 6/164 (3%)

Query: 86  LTNNAVKMF-DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRV 144
           L N+ V +    L K+G    A  +F  +++ G   DV ++T++I A+A++G+ +EA+ V
Sbjct: 171 LDNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNV 230

Query: 145 FMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVF 204
           F +M   G  P   TY V++           KI    +K    M   G+ P+A TY  + 
Sbjct: 231 FKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEK----MKSDGIAPDAYTYNTLI 286

Query: 205 EAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFR 248
               R     EA  + ++MKA GF  D K    AL+D  G+  R
Sbjct: 287 TCCKRGSLHQEAAQVFEEMKAAGFSYD-KVTYNALLDVYGKSHR 329



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 71/139 (51%), Gaps = 9/139 (6%)

Query: 87  TNNAVKMFDALSKD-GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVF 145
           T N++    + S D G + E L+   +I  KG  PD++++  VI AY    + ++A R+F
Sbjct: 666 TYNSLMYMHSRSADFGKSEEILR---EILAKGIKPDIISYNTVIYAYCRNTRMRDASRIF 722

Query: 146 MRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFE 205
             M  SG+ P+  TY   I   AA +     +  +A   +  M+  G RPN  TY ++ +
Sbjct: 723 SEMRNSGIVPDVITYNTFIGSYAADS-----MFEEAIGVVRYMIKHGCRPNQNTYNSIVD 777

Query: 206 AFVRAQKVDEARGLLQQMK 224
            + +  + DEA+  ++ ++
Sbjct: 778 GYCKLNRKDEAKLFVEDLR 796



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 68/135 (50%), Gaps = 5/135 (3%)

Query: 97  LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
            SK  L  EA + F+++K++G  PD+    +++  Y       +A  V   M   G  P+
Sbjct: 604 CSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPS 663

Query: 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
             TY  L+   + +AD      G +++ L E++ KG++P+  +Y  V  A+ R  ++ +A
Sbjct: 664 MATYNSLMYMHSRSAD-----FGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDA 718

Query: 217 RGLLQQMKAKGFVPD 231
             +  +M+  G VPD
Sbjct: 719 SRIFSEMRNSGIVPD 733



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 75/153 (49%), Gaps = 8/153 (5%)

Query: 74  LQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           + +IF ++   GL+ + V    +     ++G+  E   +F ++K  G +P+      +I 
Sbjct: 438 MMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLIS 497

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
           AY+  G  ++A+ V+ RML +GV P+  TY  ++  LA        +   ++K L EM  
Sbjct: 498 AYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGG-----MWEQSEKVLAEMED 552

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
              +PN  TY ++  A+   +++     L +++
Sbjct: 553 GRCKPNELTYCSLLHAYANGKEIGLMHSLAEEV 585



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 64/160 (40%), Gaps = 10/160 (6%)

Query: 77  IFHKMRTEGLTNNAVKMFDALSK----DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           IF +MR  G   N +  F+A  K     G   E +++F +I   G  PD+V    ++  +
Sbjct: 406 IFEEMRNAGCKPN-ICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVF 464

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G   E   VF  M  +G  P   T+  LI   +            A      M+  G
Sbjct: 465 GQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGS-----FEQAMTVYRRMLDAG 519

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           + P+  TY  V  A  R    +++  +L +M+     P+E
Sbjct: 520 VTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNE 559



 Score = 43.1 bits (100), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 24/120 (20%), Positives = 56/120 (46%), Gaps = 5/120 (4%)

Query: 113 IKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172
           +K++G  P +  + +++  ++ +    ++  +   +LA G+ P+  +Y  +I        
Sbjct: 655 MKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCR--- 711

Query: 173 GNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
            N + + DA +   EM   G+ P+  TY     ++      +EA G+++ M   G  P++
Sbjct: 712 -NTR-MRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQ 769


>gi|357117807|ref|XP_003560653.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Brachypodium distachyon]
          Length = 692

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 85/187 (45%), Gaps = 33/187 (17%)

Query: 78  FHKMRTEGLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F +M+ EG+  N V      DA  K+G+  EA++LFAQ++ KG  P+ V +T +++    
Sbjct: 287 FAEMKREGVMANVVTFSTFVDAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTCLVDGTCK 346

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA-----AAADGNAKIL----------- 178
           AG+  +AL +   M+  GV  N  TY VL+ GL      A A+   +++           
Sbjct: 347 AGRLDDALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGKVAEAEDVFRLMERAGIRANELL 406

Query: 179 --------------GDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
                           A   L EM  KGM  +   Y A+       QK+DEA+ LL +M 
Sbjct: 407 YTTLIHGHFVYKNSERALSLLSEMKDKGMELDVSLYGALIWGLCNLQKLDEAKSLLNKMD 466

Query: 225 AKGFVPD 231
             G  P+
Sbjct: 467 ECGLKPN 473



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 66/140 (47%), Gaps = 5/140 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M D L K+G   EA  L A++K  G  PDVV + ++I+ Y   G+ +E  ++   M   G
Sbjct: 200 MIDFLCKEGDLAEARALLARMKAIGCSPDVVTYNSLIDGYGKCGELEEVEKLVGEMRGCG 259

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  TY  L+             +  A  Y  EM  +G+  N  T++   +AF +   
Sbjct: 260 CRPDVVTYNALVNCFCKFGR-----MERAYSYFAEMKREGVMANVVTFSTFVDAFCKNGM 314

Query: 213 VDEARGLLQQMKAKGFVPDE 232
           V EA  L  QM+ KG  P+E
Sbjct: 315 VREAMKLFAQMRMKGMKPNE 334



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 74/151 (49%), Gaps = 7/151 (4%)

Query: 82  RTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEA 141
           R + +T NA  + +   K G    A   FA++K +G M +VV  +  ++A+   G  +EA
Sbjct: 261 RPDVVTYNA--LVNCFCKFGRMERAYSYFAEMKREGVMANVVTFSTFVDAFCKNGMVREA 318

Query: 142 LRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYT 201
           +++F +M   G+ PN  TY  L+ G   A       L DA     EMV +G+  N  TYT
Sbjct: 319 MKLFAQMRMKGMKPNEVTYTCLVDGTCKAGR-----LDDALVLTNEMVQQGVPLNVVTYT 373

Query: 202 AVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
            + +   +  KV EA  + + M+  G   +E
Sbjct: 374 VLVDGLCKEGKVAEAEDVFRLMERAGIRANE 404



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 70/137 (51%), Gaps = 6/137 (4%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA  L  ++ + G  P+ V +T +++A   A +  EA+ +  +M+ SG  PN  TY  L+
Sbjct: 457 EAKSLLNKMDECGLKPNNVIYTNIMDACFKARKESEAIALLQKMMDSGFRPNIVTYCALV 516

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            GL  A       + +A  +  +MV  G+ PN   YTA+ +   +  ++D+A  LL +M 
Sbjct: 517 DGLCKAGS-----IDEAISHFNKMVDLGLEPNVQAYTALVDGLCKNGRLDKAVLLLDEMI 571

Query: 225 AKGFVPDEKAVKEALID 241
            KG   D   V  +L+D
Sbjct: 572 DKGMSLD-NVVCTSLMD 587



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 82/201 (40%), Gaps = 34/201 (16%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + + +KM   GL  N V    + DA  K     EA+ L  ++ D G  P++V + A+++ 
Sbjct: 459 KSLLNKMDECGLKPNNVIYTNIMDACFKARKESEAIALLQKMMDSGFRPNIVTYCALVDG 518

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA----------------------- 168
              AG   EA+  F +M+  G+ PN   Y  L+ GL                        
Sbjct: 519 LCKAGSIDEAISHFNKMVDLGLEPNVQAYTALVDGLCKNGRLDKAVLLLDEMIDKGMSLD 578

Query: 169 -----AAADGNAKI--LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221
                +  DG+ K   L DA     +M+  G++ +   YT     F     + EAR +L 
Sbjct: 579 NVVCTSLMDGHLKQGNLQDAFALKAKMINSGLQLDLYGYTCFVWGFCNLNMIQEAREVLS 638

Query: 222 QMKAKGFVPDEKAVKEALIDK 242
           +M   G  PD   V   LI+K
Sbjct: 639 EMIENGITPD-AVVYNCLINK 658



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 74/151 (49%), Gaps = 8/151 (5%)

Query: 78  FHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F+KM   GL  N      + D L K+G   +A+ L  ++ DKG   D V  T++++ +  
Sbjct: 532 FNKMVDLGLEPNVQAYTALVDGLCKNGRLDKAVLLLDEMIDKGMSLDNVVCTSLMDGHLK 591

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            G  ++A  +  +M+ SG+  + Y Y   + G       N  ++ +A++ L EM+  G+ 
Sbjct: 592 QGNLQDAFALKAKMINSGLQLDLYGYTCFVWGFC-----NLNMIQEAREVLSEMIENGIT 646

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           P+A  Y  +     +   ++EA  L  +M++
Sbjct: 647 PDAVVYNCLINKCQKLGNMEEAAILQNEMES 677



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 79/171 (46%), Gaps = 11/171 (6%)

Query: 75  QEIFHKMRTEGLTNNAVKMFDALSKDGLTHE----ALQLFAQIKDKGHMPDVVAHTAVIE 130
           +++F  M   G+  N + ++  L      ++    AL L +++KDKG   DV  + A+I 
Sbjct: 389 EDVFRLMERAGIRANEL-LYTTLIHGHFVYKNSERALSLLSEMKDKGMELDVSLYGALIW 447

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
              +  +  EA  +  +M   G+ PN   Y  ++      A   A+   +A   L +M+ 
Sbjct: 448 GLCNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMD-----ACFKARKESEAIALLQKMMD 502

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
            G RPN  TY A+ +   +A  +DEA     +M   G  P+ +A   AL+D
Sbjct: 503 SGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAYT-ALVD 552



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 9/136 (6%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L+++  +  A +LF Q+      P+V     +I+     G   EA  +  RM A G +P
Sbjct: 172 CLARERSSELAWRLFEQLP----APNVFTFNIMIDFLCKEGDLAEARALLARMKAIGCSP 227

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY  LI G      G    L + +K + EM G G RP+  TY A+   F +  +++ 
Sbjct: 228 DVVTYNSLIDGY-----GKCGELEEVEKLVGEMRGCGCRPDVVTYNALVNCFCKFGRMER 282

Query: 216 ARGLLQQMKAKGFVPD 231
           A     +MK +G + +
Sbjct: 283 AYSYFAEMKREGVMAN 298


>gi|449438480|ref|XP_004137016.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 79/154 (51%), Gaps = 8/154 (5%)

Query: 77  IFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F  M  +G   N      + D+ SK+G   EA++LF ++K++G  PD V ++ ++    
Sbjct: 345 VFETMNQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLC 404

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            +G+  + + +F      GVA NA  YA LI GL     G A  + DA+    EM  KG 
Sbjct: 405 KSGRLDDGMELFDFCRNKGVAINAMFYASLIDGL-----GKAGRIEDAENLFEEMSEKGC 459

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
             ++  Y A+ +A  +  K+D+A  L  +M+ +G
Sbjct: 460 ARDSYCYNAIIDALAKHGKIDQALALFGRMEEEG 493



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K     EA  +F  +  KG   +V  +TA+I++Y+  G  +EA+R+F RM   G  P
Sbjct: 332 GLCKQRKCMEAYAVFETMNQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEP 391

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +A TY+VL+ GL  +       L D  +       KG+  NA  Y ++ +   +A ++++
Sbjct: 392 DAVTYSVLVNGLCKSGR-----LDDGMELFDFCRNKGVAINAMFYASLIDGLGKAGRIED 446

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      A+ID
Sbjct: 447 AENLFEEMSEKGCARDSYCYN-AIID 471



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F   R +G+  NA+    + D L K G   +A  LF ++ +KG   D   + A+I+A 
Sbjct: 414 ELFDFCRNKGVAINAMFYASLIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDAL 473

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           A  G+  +AL +F RM   G     YT+ +LI GL            +A K+  +M+ KG
Sbjct: 474 AKHGKIDQALALFGRMEEEGCDQTVYTFTILIDGLFKEHKNE-----EAIKFWDKMIDKG 528

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + P   ++ A+        KV  A  +L  +   G +P+
Sbjct: 529 ITPTVASFRALAIGLCLCGKVARACKILDDLAPMGIIPE 567



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 66/124 (53%), Gaps = 5/124 (4%)

Query: 109 LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
           +F ++KD+G +    A  ++I+++ + G  +E L V+ RM  +G+ P+ YTY  L+ GL 
Sbjct: 170 VFFELKDRGLLMTESAANSLIKSFGNLGLVEELLWVWRRMKENGIDPSLYTYNFLVNGLV 229

Query: 169 AAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
                N+  +  A+K    M G  + P+  TY  + + + +A K+ +A    + M+ K  
Sbjct: 230 -----NSMFIESAEKVFEVMDGGKIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNV 284

Query: 229 VPDE 232
            PD+
Sbjct: 285 KPDK 288



 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 67/151 (44%), Gaps = 31/151 (20%)

Query: 112 QIKDKGHM-PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI------ 164
           ++ D G + PD V +  +I+ Y  AG+ ++A+  F  M    V P+  TY  LI      
Sbjct: 242 EVMDGGKIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKITYMTLIQACYSE 301

Query: 165 ---------------KGLAAAADGNAKILGD--AQKYLME-------MVGKGMRPNAGTY 200
                          +GL       + ++G    Q+  ME       M  KG R N   Y
Sbjct: 302 RDFDTCLSLYLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETMNQKGCRANVAIY 361

Query: 201 TAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           TA+ +++ +   ++EA  L ++MK +GF PD
Sbjct: 362 TALIDSYSKNGSMEEAMRLFERMKNEGFEPD 392



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 67/148 (45%), Gaps = 8/148 (5%)

Query: 81  MRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140
           + TE   N+ +K F  L   GL  E L ++ ++K+ G  P +  +  ++    ++   + 
Sbjct: 180 LMTESAANSLIKSFGNL---GLVEELLWVWRRMKENGIDPSLYTYNFLVNGLVNSMFIES 236

Query: 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTY 200
           A +VF  M    + P+  TY ++IKG   A       L  A +   +M  K ++P+  TY
Sbjct: 237 AEKVFEVMDGGKIVPDTVTYNIMIKGYCKAGK-----LQKAMEKFRDMEMKNVKPDKITY 291

Query: 201 TAVFEAFVRAQKVDEARGLLQQMKAKGF 228
             + +A    +  D    L  +M+ +G 
Sbjct: 292 MTLIQACYSERDFDTCLSLYLEMEERGL 319


>gi|410109913|gb|AFV61036.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           aristata]
          Length = 431

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 111/237 (46%), Gaps = 15/237 (6%)

Query: 2   AATAILRWLLHSPSPKRS-LRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPF 60
           +A+A+   +  +   +RS J + +  + A L+      + +  +  +  + K   P+D  
Sbjct: 53  SASAVFAAIXETXGTQRSDJYVFSGLITAYLESGFLRDAIECYR--LTREHKFWVPFDTC 110

Query: 61  KKVVDEEPTDPRNLQEI--FHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIK 114
           +KV+ E     +  + +  F++   E     ++  F+ L     KDG    A  +F  I 
Sbjct: 111 RKVL-EHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAIT 169

Query: 115 DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174
             G  P VV++  ++  Y   G   E  R+   MLASGV P+ YTY+VLI GL   +   
Sbjct: 170 KWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESK-- 227

Query: 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              + DA +   EM+ KG+ PN  T+T + +   +  +VD A  + +QM ++   PD
Sbjct: 228 ---MDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 281



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 85/201 (42%), Gaps = 35/201 (17%)

Query: 63  VVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM 119
           +  E   D  N  E+F +M  +GL  N V    + D   K+G    A++++ Q+  +   
Sbjct: 222 LCKESKMDDAN--ELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 279

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN----- 174
           PD++ +  +I      G  K+A  +   M   G+ P+  TY  LI G     D +     
Sbjct: 280 PDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEH 339

Query: 175 -----------------AKILG--------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
                            A I G        DA+K L EM+  G++P+A TYT +   F +
Sbjct: 340 RKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCK 399

Query: 210 AQKVDEARGLLQQMKAKGFVP 230
              V +   LL++M+  G VP
Sbjct: 400 KGDVWKGXKLLKEMQRDGHVP 420


>gi|242071495|ref|XP_002451024.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
 gi|241936867|gb|EES10012.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
          Length = 813

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 88/163 (53%), Gaps = 10/163 (6%)

Query: 73  NLQEIFHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           +L E+F+ M ++G+  ++  +F+ L    +K G+   A  +F +++++G  PDVV ++ V
Sbjct: 374 DLTELFNLMLSDGIAPDS-HIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTV 432

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I A    G+  +A+  F +M+  GVAP+  TY  LI+G     D     L  A+  +++M
Sbjct: 433 IAALCRIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQGFCTHGD-----LLKAKDLVLQM 487

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + KGMRP+ G +  +     +  +V +A+ +     + G  P+
Sbjct: 488 MNKGMRPDIGCFNFIINNLCKLGRVMDAQNIFDFTISIGLHPN 530



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 8/154 (5%)

Query: 80  KMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           KM ++G+  + V    +  +L K G   +A  +F  +  KG   D+ ++  ++  YA+ G
Sbjct: 311 KMTSQGILPDVVTLNSLMASLCKHGKIKDARDVFDSMAMKGQKTDIFSYKIMLNGYATKG 370

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196
              +   +F  ML+ G+AP+++ + VLIK  A        +L  A     EM  +G+ P+
Sbjct: 371 CLVDLTELFNLMLSDGIAPDSHIFNVLIKAYAKCG-----MLDRATIIFNEMREQGVEPD 425

Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
             TY+ V  A  R  K+D+A     QM  +G  P
Sbjct: 426 VVTYSTVIAALCRIGKMDDAVEKFNQMIDQGVAP 459



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 12/161 (7%)

Query: 76  EIFHKMRTEGL-----TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           ++F++M   G+     T N V   +AL K     +A  +  Q+ DKG +PD   + ++I 
Sbjct: 237 DLFNEMVQRGISPDLSTYNCV--VNALCKARAMDKAEAILRQMVDKGVLPDNWTYNSLIY 294

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
            Y+S GQ KEA+RV  +M + G+ P+  T    +  L A+   + KI  DA+     M  
Sbjct: 295 GYSSTGQWKEAVRVSKKMTSQGILPDVVT----LNSLMASLCKHGKI-KDARDVFDSMAM 349

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           KG + +  +Y  +   +     + +   L   M + G  PD
Sbjct: 350 KGQKTDIFSYKIMLNGYATKGCLVDLTELFNLMLSDGIAPD 390



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 61/139 (43%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K G   +A  +F      G  P+V+ +  +++ Y   G+ + ALRVF  M+++G
Sbjct: 502 IINNLCKLGRVMDAQNIFDFTISIGLHPNVMVYNTLMDGYCLVGKMENALRVFDVMVSAG 561

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN   Y  L+ G           + +      E++ KG++P+   Y  +     +A +
Sbjct: 562 IQPNVVVYGTLVNGYCKVGR-----IDEGLSLFREILHKGIKPSTTLYNIILHGLFQAGR 616

Query: 213 VDEARGLLQQMKAKGFVPD 231
              A+    +M   G   D
Sbjct: 617 TVPAKVKFHEMTESGIAMD 635



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 79/191 (41%), Gaps = 16/191 (8%)

Query: 73  NLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           N   +F  M + G+  N V    + +   K G   E L LF +I  KG  P    +  ++
Sbjct: 549 NALRVFDVMVSAGIQPNVVVYGTLVNGYCKVGRIDEGLSLFREILHKGIKPSTTLYNIIL 608

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
                AG+   A   F  M  SG+A + YTY++++ GL   +  +  IL        E+ 
Sbjct: 609 HGLFQAGRTVPAKVKFHEMTESGIAMDRYTYSIVLGGLFKNSCSDEAIL-----LFKELH 663

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD--------EKAVKEALID 241
              ++ +  T   +     + ++V+EA+ L   +   G VP            +KE L++
Sbjct: 664 AMNVKIDITTLNIMIAGMFQIRRVEEAKDLFASISRSGLVPSVVTYSIMMTNLIKEGLVE 723

Query: 242 KRGQGFRGVIN 252
           +    F  + N
Sbjct: 724 EADDMFSSMEN 734



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 66/135 (48%), Gaps = 5/135 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   K+G  ++A  LF ++  +G  PD+  +  V+ A   A    +A  +  +M+  G
Sbjct: 222 VIDGFFKEGDVNKACDLFNEMVQRGISPDLSTYNCVVNALCKARAMDKAEAILRQMVDKG 281

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V P+ +TY  LI G ++   G  K   +A +   +M  +G+ P+  T  ++  +  +  K
Sbjct: 282 VLPDNWTYNSLIYGYSST--GQWK---EAVRVSKKMTSQGILPDVVTLNSLMASLCKHGK 336

Query: 213 VDEARGLLQQMKAKG 227
           + +AR +   M  KG
Sbjct: 337 IKDARDVFDSMAMKG 351



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 70/159 (44%), Gaps = 10/159 (6%)

Query: 76  EIFHKMRTEGLTNNAVKMFDALSKDGLTH----EALQLFAQIKDKGHMPDVVAHTAVIEA 131
           E F++M  +G+   ++  +  L +   TH    +A  L  Q+ +KG  PD+     +I  
Sbjct: 447 EKFNQMIDQGVAP-SISTYHFLIQGFCTHGDLLKAKDLVLQMMNKGMRPDIGCFNFIINN 505

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G+  +A  +F   ++ G+ PN   Y  L+ G           + +A +    MV  
Sbjct: 506 LCKLGRVMDAQNIFDFTISIGLHPNVMVYNTLMDGYCLVGK-----MENALRVFDVMVSA 560

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           G++PN   Y  +   + +  ++DE   L +++  KG  P
Sbjct: 561 GIQPNVVVYGTLVNGYCKVGRIDEGLSLFREILHKGIKP 599



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 70/165 (42%), Gaps = 19/165 (11%)

Query: 71  PRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           PR L    H   T G+      + D  ++       L  F Q+   G   D +  + ++ 
Sbjct: 101 PRVLSPTLH---TYGI------LMDCCTRAHRPKLTLAFFGQVLKTGLGIDTIMISNLLR 151

Query: 131 AYASAGQGKEALRVFM-RMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
               A +  EAL + + RM   G  P+ ++Y +++K L +         G A + L+ M+
Sbjct: 152 GLCEAKRTAEALDILLHRMPHLGCVPDVFSYCIVLKSLCSDRKS-----GQADE-LLRMM 205

Query: 190 GKG---MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +G     PNA  Y  V + F +   V++A  L  +M  +G  PD
Sbjct: 206 AEGGAVCLPNAVAYNTVIDGFFKEGDVNKACDLFNEMVQRGISPD 250


>gi|125558386|gb|EAZ03922.1| hypothetical protein OsI_26055 [Oryza sativa Indica Group]
          Length = 658

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 87/170 (51%), Gaps = 11/170 (6%)

Query: 77  IFHKMRTEGLTNNA-----VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +F +M   G+ N+      V +  AL KDG   E + +F ++  +G   +   +TA+I++
Sbjct: 316 LFQEMEERGMGNDIPQHAYVLVIGALCKDGKPFEGMAVFERMLKRGCAANAAIYTALIDS 375

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G+ KEA+ +F RM  SG+  ++ TY V++  L          L +A         K
Sbjct: 376 MGKFGREKEAMALFERMKDSGLKLDSVTYGVIVNCLCRFGK-----LDEAVACFRSCQEK 430

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           G+  NA  YT++ + F +A  VD+++ L ++M AKGFVPD       LID
Sbjct: 431 GIAVNAIFYTSLIDGFGKAGMVDQSKELFEEMIAKGFVPDSYCYN-VLID 479



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 75/163 (46%), Gaps = 8/163 (4%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M+  GL  ++V    + + L + G   EA+  F   ++KG   + + +T++I+ + 
Sbjct: 388 LFERMKDSGLKLDSVTYGVIVNCLCRFGKLDEAVACFRSCQEKGIAVNAIFYTSLIDGFG 447

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG   ++  +F  M+A G  P++Y Y VLI GLA +       + DA      M   G 
Sbjct: 448 KAGMVDQSKELFEEMIAKGFVPDSYCYNVLIDGLAKSGR-----MDDACALYKRMEDDGC 502

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK 236
                TYT + +   +  K +EA      M  KG  P   A +
Sbjct: 503 DQTVYTYTILIDGLFKEHKNEEALKFWDAMIDKGITPTAAAFR 545



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 72/158 (45%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
            F   + +G+  NA+    + D   K G+  ++ +LF ++  KG +PD   +  +I+  A
Sbjct: 423 CFRSCQEKGIAVNAIFYTSLIDGFGKAGMVDQSKELFEEMIAKGFVPDSYCYNVLIDGLA 482

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            +G+  +A  ++ RM   G     YTY +LI GL            +A K+   M+ KG+
Sbjct: 483 KSGRMDDACALYKRMEDDGCDQTVYTYTILIDGLFKEHKNE-----EALKFWDAMIDKGI 537

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            P A  +  +      + K   A  +L ++   G +P+
Sbjct: 538 TPTAAAFRTLASGLCLSGKFSRACRILDELAPMGVIPE 575



 Score = 44.7 bits (104), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 3/97 (3%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+F +M  +G   ++     + D L+K G   +A  L+ +++D G    V  +T +I+ 
Sbjct: 456 KELFEEMIAKGFVPDSYCYNVLIDGLAKSGRMDDACALYKRMEDDGCDQTVYTYTILIDG 515

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
                + +EAL+ +  M+  G+ P A  +  L  GL 
Sbjct: 516 LFKEHKNEEALKFWDAMIDKGITPTAAAFRTLASGLC 552



 Score = 42.7 bits (99), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 73/163 (44%), Gaps = 22/163 (13%)

Query: 85  GLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRV 144
           GL + AV +FDA+S +           Q++     PDVV++  +I+ Y  AG+  +A+  
Sbjct: 236 GLLDTAVNVFDAMSTED----------QVR-----PDVVSYNILIKGYCRAGRAHDAMAR 280

Query: 145 FMRMLASG-VAPNAYTYAVLIKGLAAAADGNAKI-LGDAQKYLMEMVGKGMRPNAGTYTA 202
              M     + P+  TY  L++     ++G   + +G  Q+  ME  G G       Y  
Sbjct: 281 LSEMQEQAKLTPDKVTYLTLMQ--CHYSEGTFPVCIGLFQE--MEERGMGNDIPQHAYVL 336

Query: 203 VFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
           V  A  +  K  E   + ++M  +G   +  A+  ALID  G+
Sbjct: 337 VIGALCKDGKPFEGMAVFERMLKRGCAAN-AAIYTALIDSMGK 378


>gi|356532610|ref|XP_003534864.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Glycine max]
          Length = 642

 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 71/146 (48%), Gaps = 7/146 (4%)

Query: 86  LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVF 145
           +T NA  +   L   G   +A+ L  Q+     +P+ V    +I  +   G+  +  RV 
Sbjct: 276 VTYNA--LVHGLCLKGKLEKAVSLLNQMVSNKCVPNDVTFGTLINGFVMQGRASDGTRVL 333

Query: 146 MRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFE 205
           + + A G   N Y Y+ LI GL      N      A +   EMVGKG  PN   Y+A+ +
Sbjct: 334 VSLEARGHRGNEYVYSSLISGLCKEGKFN-----QAMELWKEMVGKGCGPNTIVYSALID 388

Query: 206 AFVRAQKVDEARGLLQQMKAKGFVPD 231
              R  K+DEARG L +MK KG++P+
Sbjct: 389 GLCREGKLDEARGFLSEMKNKGYLPN 414



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 12/169 (7%)

Query: 71  PRNLQEIFHKMRTEGLTNNAVKMFDA----LSKDGLTHEALQLFAQI---KDKGHMPDVV 123
           P    ++FH+M  E      VK F++    + ++GL + AL+ +  +   K     P+ +
Sbjct: 112 PEKAVDLFHRMWGEFQCKQTVKSFNSVLNVIVQEGLFNRALEFYNHVVASKSLNIHPNAL 171

Query: 124 AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQK 183
               VI+A    G   +A+ VF  +     AP+ YTY+ L+ GL          + +A  
Sbjct: 172 TFNLVIKAMCRLGLVDKAIEVFREIPLRNCAPDNYTYSTLMHGLCKEER-----IDEAVS 226

Query: 184 YLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
            L EM  +G  PN   +  +  A  +   +  A  L+  M  KG VP+E
Sbjct: 227 LLDEMQVEGTFPNLVAFNVLISALCKKGDLGRAAKLVDNMFLKGCVPNE 275



 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 81/169 (47%), Gaps = 12/169 (7%)

Query: 70  DPRNLQEIFHKMRTE---GLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVV-AH 125
           D R+L+E+ H+M+ E    L  N + MF A  K  L  +A+ LF ++  +      V + 
Sbjct: 76  DFRSLEEVLHQMKRERRVFLEKNFIVMFKAYGKAHLPEKAVDLFHRMWGEFQCKQTVKSF 135

Query: 126 TAVIEAYASAGQGKEALRVFMRMLAS---GVAPNAYTYAVLIKGLAAAADGNAKILGDAQ 182
            +V+      G    AL  +  ++AS    + PNA T+ ++IK +         ++  A 
Sbjct: 136 NSVLNVIVQEGLFNRALEFYNHVVASKSLNIHPNALTFNLVIKAMCRLG-----LVDKAI 190

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +   E+  +   P+  TY+ +     + +++DEA  LL +M+ +G  P+
Sbjct: 191 EVFREIPLRNCAPDNYTYSTLMHGLCKEERIDEAVSLLDEMQVEGTFPN 239



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 67/147 (45%), Gaps = 7/147 (4%)

Query: 86  LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVF 145
           LT N V    A+ + GL  +A+++F +I  +   PD   ++ ++       +  EA+ + 
Sbjct: 171 LTFNLV--IKAMCRLGLVDKAIEVFREIPLRNCAPDNYTYSTLMHGLCKEERIDEAVSLL 228

Query: 146 MRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFE 205
             M   G  PN   + VLI  L    D     LG A K +  M  KG  PN  TY A+  
Sbjct: 229 DEMQVEGTFPNLVAFNVLISALCKKGD-----LGRAAKLVDNMFLKGCVPNEVTYNALVH 283

Query: 206 AFVRAQKVDEARGLLQQMKAKGFVPDE 232
                 K+++A  LL QM +   VP++
Sbjct: 284 GLCLKGKLEKAVSLLNQMVSNKCVPND 310



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 76/171 (44%), Gaps = 32/171 (18%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L K+G  ++A++L+ ++  KG  P+ + ++A+I+     G+  EA      M   G
Sbjct: 351 LISGLCKEGKFNQAMELWKEMVGKGCGPNTIVYSALIDGLCREGKLDEARGFLSEMKNKG 410

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKIL---------------------------GDAQKYL 185
             PN++TY+ L++G   A D +  IL                           G   + L
Sbjct: 411 YLPNSFTYSSLMRGYFEAGDSHKAILVWKEMANNNCIHNEVCYSILINGLCKDGKFMEAL 470

Query: 186 M---EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFV--PD 231
           M   +M+ +G++ +   Y+++   F  A  V++   L  QM  +G V  PD
Sbjct: 471 MVWKQMLSRGIKLDVVAYSSMIHGFCNANLVEQGLKLFNQMLCQGPVVQPD 521



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/140 (21%), Positives = 64/140 (45%), Gaps = 5/140 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +     G   +  ++   ++ +GH  +   ++++I      G+  +A+ ++  M+  G
Sbjct: 316 LINGFVMQGRASDGTRVLVSLEARGHRGNEYVYSSLISGLCKEGKFNQAMELWKEMVGKG 375

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN   Y+ LI GL          L +A+ +L EM  KG  PN+ TY+++   +  A  
Sbjct: 376 CGPNTIVYSALIDGLCREGK-----LDEARGFLSEMKNKGYLPNSFTYSSLMRGYFEAGD 430

Query: 213 VDEARGLLQQMKAKGFVPDE 232
             +A  + ++M     + +E
Sbjct: 431 SHKAILVWKEMANNNCIHNE 450



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/196 (22%), Positives = 84/196 (42%), Gaps = 45/196 (22%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E++ +M  +G   N +    + D L ++G   EA    +++K+KG++P+   +++++  Y
Sbjct: 366 ELWKEMVGKGCGPNTIVYSALIDGLCREGKLDEARGFLSEMKNKGYLPNSFTYSSLMRGY 425

Query: 133 ASAGQ---------------------------------GK--EALRVFMRMLASGVAPNA 157
             AG                                  GK  EAL V+ +ML+ G+  + 
Sbjct: 426 FEAGDSHKAILVWKEMANNNCIHNEVCYSILINGLCKDGKFMEALMVWKQMLSRGIKLDV 485

Query: 158 YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG--MRPNAGTYTAVFEAFVRAQKVDE 215
             Y+ +I G       NA ++    K   +M+ +G  ++P+  TY  +  AF   + +  
Sbjct: 486 VAYSSMIHGFC-----NANLVEQGLKLFNQMLCQGPVVQPDVITYNILLNAFCIQKSIFR 540

Query: 216 ARGLLQQMKAKGFVPD 231
           A  +L  M  +G  PD
Sbjct: 541 AIDILNIMLDQGCDPD 556



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 5/140 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L K+    EA+ L  +++ +G  P++VA   +I A    G    A ++   M   G
Sbjct: 211 LMHGLCKEERIDEAVSLLDEMQVEGTFPNLVAFNVLISALCKKGDLGRAAKLVDNMFLKG 270

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN  TY  L+ GL          L  A   L +MV     PN  T+  +   FV   +
Sbjct: 271 CVPNEVTYNALVHGLCLKGK-----LEKAVSLLNQMVSNKCVPNDVTFGTLINGFVMQGR 325

Query: 213 VDEARGLLQQMKAKGFVPDE 232
             +   +L  ++A+G   +E
Sbjct: 326 ASDGTRVLVSLEARGHRGNE 345


>gi|255660828|gb|ACU25583.1| pentatricopeptide repeat-containing protein [Lantana canescens]
          Length = 418

 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 68/135 (50%), Gaps = 5/135 (3%)

Query: 97  LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
             KDG    A  +F  I   G  P VV++  ++  Y   G   E  R+   MLASGV P+
Sbjct: 146 FCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPD 205

Query: 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
            YTY+VLI GL   +      + DA +   EM+ KG+ PN  T+T + +   +  +VD A
Sbjct: 206 VYTYSVLINGLCKESK-----MDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLA 260

Query: 217 RGLLQQMKAKGFVPD 231
             + +QM ++   PD
Sbjct: 261 MEIYKQMLSQSLSPD 275



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 83/201 (41%), Gaps = 35/201 (17%)

Query: 63  VVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM 119
           +  E   D  N  E+F +M  +GL  N V    + D   K+G    A++++ Q+  +   
Sbjct: 216 LCKESKMDDAN--ELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 273

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
           PD++ +  +I      G  K+A  +   M   G+ P+  TY  LI G     D ++    
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEH 333

Query: 180 ------------------------------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
                                         DA+K L EM+  G++P+A TYT +   F +
Sbjct: 334 RKRMIQENIRLDEVAYTALXSGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCK 393

Query: 210 AQKVDEARGLLQQMKAKGFVP 230
              V +   LL++M+  G VP
Sbjct: 394 KGDVWKGSKLLKEMQRDGHVP 414


>gi|414871539|tpg|DAA50096.1| TPA: ATP binding protein [Zea mays]
          Length = 692

 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 70/139 (50%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   ++GL    ++L  Q+ + G MPDV+ +T VI  +   G   EA+ +   M A G
Sbjct: 410 LVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACG 469

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN  +Y +++KGL +     A+   DA+  + +M+ +G   N  T+  +     +   
Sbjct: 470 CKPNTISYTIVLKGLCS-----AERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGL 524

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V++A  LL+QM   G  PD
Sbjct: 525 VEQAIELLKQMLVNGCSPD 543



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 67/120 (55%), Gaps = 8/120 (6%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+ + M  +G++ N +    +  ALS++G  ++ +Q+F  I+D     D V + AVI + 
Sbjct: 565 ELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSL 624

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+ + A+     M++SG  PN  TY +LI+GL  A++G  K   +AQ+ L E+  KG
Sbjct: 625 CKRGETERAIEFLAYMVSSGCVPNESTYTILIRGL--ASEGFVK---EAQEMLTELCSKG 679



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 78/180 (43%), Gaps = 16/180 (8%)

Query: 74  LQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           +QE+  +M       N V    +   L ++GL     ++ AQ+ + G  PD+  +  +I+
Sbjct: 283 VQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIID 342

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
                G  + A  +  RM + G+ PN   Y  L+KGL +A         + ++ L EM  
Sbjct: 343 GICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWE-----ETEELLAEMFD 397

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD--------EKAVKEALIDK 242
           K    +  T+  + + F +   VD    LL+QM   G +PD            KE LID+
Sbjct: 398 KDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDE 457



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 80/176 (45%), Gaps = 8/176 (4%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +++  +M  +G   N +    + + L K GL  +A++L  Q+   G  PD+++++ VI+ 
Sbjct: 494 EDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDG 553

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              AG+  EAL +   M+  G++PN   Y+ +   L+     N  I     +    +   
Sbjct: 554 LGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVI-----QMFDNIQDT 608

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGF 247
            +R +A  Y AV  +  +  + + A   L  M + G VP+E      +     +GF
Sbjct: 609 TIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGF 664



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 57/139 (41%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +A  + G    A+++   +  +G   DV     V+ A    G   EAL +   + + G
Sbjct: 200 ILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDEALHLLRDLPSFG 259

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  +Y  ++KGL       AK  G  Q+ + EMV     PN  T+  +     R   
Sbjct: 260 CEPDVVSYNAVLKGLCM-----AKRWGCVQELMEEMVRMACPPNIVTFNTLISYLCRNGL 314

Query: 213 VDEARGLLQQMKAKGFVPD 231
            +    +L QM   G  PD
Sbjct: 315 FERVHEVLAQMVEHGCTPD 333



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/143 (23%), Positives = 58/143 (40%), Gaps = 5/143 (3%)

Query: 89  NAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRM 148
           N   + +A+   G   EAL L   +   G  PDVV++ AV++    A +      +   M
Sbjct: 231 NCNLVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEM 290

Query: 149 LASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFV 208
           +     PN  T+  LI  L         +     + L +MV  G  P+   Y  + +   
Sbjct: 291 VRMACPPNIVTFNTLISYLC-----RNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGIC 345

Query: 209 RAQKVDEARGLLQQMKAKGFVPD 231
           +   ++ A  +L +M + G  P+
Sbjct: 346 KEGHLEVAHEILNRMPSYGLKPN 368



 Score = 45.4 bits (106), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 48/107 (44%), Gaps = 8/107 (7%)

Query: 125 HTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKY 184
           + A++  Y  AGQ + A R+     A  V PNAYTY  +++ L A        + DA   
Sbjct: 130 YNAMVAGYCRAGQLESARRL---AAAVPVPPNAYTYFPVVRALCARGR-----IADALAV 181

Query: 185 LMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           L EM  +G  P    Y  + EA  R      A  +L+ + A+G   D
Sbjct: 182 LDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALD 228


>gi|297846140|ref|XP_002890951.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297336793|gb|EFH67210.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 689

 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 80/159 (50%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +++ +M  +G++ N V    +   L +DG  +EA  ++ QI  +G  P VV ++++I+ +
Sbjct: 269 DVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGIYCQILKRGLEPSVVTYSSLIDGF 328

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G  +    ++  M+  G  P+   Y VL+ GL         ++  A ++ ++ +G+ 
Sbjct: 329 CKYGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLCKQG-----LMLHALRFSVKTLGQS 383

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +RPN   + ++ + + R  + DEA  + + M   G  PD
Sbjct: 384 IRPNVVVFNSLIDGWCRLNRCDEALKVFRLMGIYGIKPD 422



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 77/159 (48%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F  M   G+  + +    + D   K G+     +LF+Q   KG   DVV  ++ I+ Y
Sbjct: 199 ELFKVMEQRGIAPDLIAYSTLIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVY 258

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G    A  V+ RML  G++PN  TY +LIKGL    DG    + +A     +++ +G
Sbjct: 259 VKFGYLTTAFDVYKRMLCQGISPNVVTYTILIKGL--CQDGR---IYEAFGIYCQILKRG 313

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + P+  TY+++ + F +   +     L + M   G+ PD
Sbjct: 314 LEPSVVTYSSLIDGFCKYGNLRSGFALYEDMIKMGYPPD 352



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 73/158 (46%), Gaps = 10/158 (6%)

Query: 78  FHKMRTE-GLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           FH++  E G   + V   K+   LS D +   A ++ + + D G  P+VV    +I  + 
Sbjct: 131 FHRLVMERGFRVDIVSCNKILKGLSVDQI-EVASRMLSLVLDCGPAPNVVTFCTLINGFC 189

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G+   A  +F  M   G+AP+   Y+ LI G   A      +LG   K   + + KG+
Sbjct: 190 KRGEMDRAFELFKVMEQRGIAPDLIAYSTLIDGYFKAG-----MLGMGHKLFSQALHKGV 244

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + +   +++  + +V+   +  A  + ++M  +G  P+
Sbjct: 245 KLDVVVFSSTIDVYVKFGYLTTAFDVYKRMLCQGISPN 282



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 67/154 (43%), Gaps = 6/154 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K GL   AL+   +   +   P+VV   ++I+ +    +  EAL+VF  M   G
Sbjct: 359 LVDGLCKQGLMLHALRFSVKTLGQSIRPNVVVFNSLIDGWCRLNRCDEALKVFRLMGIYG 418

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+  T   L++      +G  K   +       M   G+ P+A  +  + +AF +  K
Sbjct: 419 IKPDVATITTLMR--VTVMEGRLK---EGLFLFFRMFKMGLEPDAVAFCTLMDAFCKNMK 473

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
                 L   M+ +  +P + AV   +I+   +G
Sbjct: 474 PTIGLQLFDLMQ-RNKIPADIAVCNVVINLLFKG 506



 Score = 43.9 bits (102), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 32/62 (51%)

Query: 95  DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           D L K G   EA  +F Q  D   +PDVVA+  +I      G+  EA  ++  ML +GV 
Sbjct: 598 DGLCKRGRVDEATNIFHQAIDAKILPDVVAYAILIRGCCKVGRLVEAALLYEHMLRNGVK 657

Query: 155 PN 156
           P+
Sbjct: 658 PD 659



 Score = 42.7 bits (99), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 31/152 (20%), Positives = 57/152 (37%), Gaps = 22/152 (14%)

Query: 103 THEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAV 162
             EA + F  + +    PD+V +  +I  Y S  +  EA R+F  +  +   PNA T  +
Sbjct: 509 VEEASKFFNNLLEGKMEPDIVTYNTMICGYCSLRRLDEAARIFEMLKFTPFGPNAVTLTI 568

Query: 163 LIKGLAAAADGNAKI----------------------LGDAQKYLMEMVGKGMRPNAGTY 200
           LI  L   +D +  +                      + +A     + +   + P+   Y
Sbjct: 569 LIHTLCKNSDMDGALRIISPSIISYSIIIDGLCKRGRVDEATNIFHQAIDAKILPDVVAY 628

Query: 201 TAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
             +     +  ++ EA  L + M   G  PD+
Sbjct: 629 AILIRGCCKVGRLVEAALLYEHMLRNGVKPDD 660



 Score = 38.9 bits (89), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 66/155 (42%), Gaps = 16/155 (10%)

Query: 88  NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMP-DVVAHTAVIEAYASAGQGKEALRVFM 146
           N+A+  FD    D         F ++   G +P  V AH  V++A    G+  +AL    
Sbjct: 82  NSALDTFDGQRSDS--------FDKLCRGGTVPFGVSAHGFVLDALFRKGEVTKALDFHR 133

Query: 147 RMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEA 206
            ++  G   +  +   ++KGL+         +  A + L  ++  G  PN  T+  +   
Sbjct: 134 LVMERGFRVDIVSCNKILKGLSVDQ------IEVASRMLSLVLDCGPAPNVVTFCTLING 187

Query: 207 FVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           F +  ++D A  L + M+ +G  PD  A    LID
Sbjct: 188 FCKRGEMDRAFELFKVMEQRGIAPDLIAY-STLID 221


>gi|449479180|ref|XP_004155527.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
           mitochondrial-like [Cucumis sativus]
          Length = 653

 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 79/154 (51%), Gaps = 8/154 (5%)

Query: 77  IFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F  M  +G   N      + D+ SK+G   EA++LF ++K++G  PD V ++ ++    
Sbjct: 347 VFETMNQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLC 406

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            +G+  + + +F      GVA NA  YA LI GL     G A  + DA+    EM  KG 
Sbjct: 407 KSGRLDDGMELFDFCRNKGVAINAMFYASLIDGL-----GKAGRIEDAENLFEEMSEKGC 461

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
             ++  Y A+ +A  +  K+D+A  L  +M+ +G
Sbjct: 462 ARDSYCYNAIIDALAKHGKIDQALALFGRMEEEG 495



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 73/146 (50%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K     EA  +F  +  KG   +V  +TA+I++Y+  G  +EA+R+F RM   G  P
Sbjct: 334 GLCKQRKCMEAYAVFETMNQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEP 393

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +A TY+VL+ GL  +       L D  +       KG+  NA  Y ++ +   +A ++++
Sbjct: 394 DAVTYSVLVNGLCKSGR-----LDDGMELFDFCRNKGVAINAMFYASLIDGLGKAGRIED 448

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      A+ID
Sbjct: 449 AENLFEEMSEKGCARDSYCYN-AIID 473



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F   R +G+  NA+    + D L K G   +A  LF ++ +KG   D   + A+I+A 
Sbjct: 416 ELFDFCRNKGVAINAMFYASLIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDAL 475

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           A  G+  +AL +F RM   G     YT+ +LI GL            +A K+  +M+ KG
Sbjct: 476 AKHGKIDQALALFGRMEEEGCDQTVYTFTILIDGLFKEHKNE-----EAIKFWDKMIDKG 530

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + P   ++ A+        KV  A  +L  +   G +P+
Sbjct: 531 ITPTVASFRALAIGLCLCGKVARACKILDDLAPMGIIPE 569



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 66/124 (53%), Gaps = 5/124 (4%)

Query: 109 LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
           +F ++KD+G +    A  ++I+++ + G  +E L V+ RM  +G+ P+ YTY  L+ GL 
Sbjct: 172 VFFELKDRGLLMTESAANSLIKSFGNLGLVEELLWVWRRMKENGIDPSLYTYNFLVNGLV 231

Query: 169 AAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
                N+  +  A+K    M G  + P+  TY  + + + +A K+ +A    + M+ K  
Sbjct: 232 -----NSMFIESAEKVFEVMDGGKIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNV 286

Query: 229 VPDE 232
            PD+
Sbjct: 287 KPDK 290



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 67/151 (44%), Gaps = 31/151 (20%)

Query: 112 QIKDKGHM-PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI------ 164
           ++ D G + PD V +  +I+ Y  AG+ ++A+  F  M    V P+  TY  LI      
Sbjct: 244 EVMDGGKIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKITYMTLIQACYSE 303

Query: 165 ---------------KGLAAAADGNAKILGD--AQKYLME-------MVGKGMRPNAGTY 200
                          +GL       + ++G    Q+  ME       M  KG R N   Y
Sbjct: 304 RDFDTCLSLYLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETMNQKGCRANVAIY 363

Query: 201 TAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           TA+ +++ +   ++EA  L ++MK +GF PD
Sbjct: 364 TALIDSYSKNGSMEEAMRLFERMKNEGFEPD 394



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 67/148 (45%), Gaps = 8/148 (5%)

Query: 81  MRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140
           + TE   N+ +K F  L   GL  E L ++ ++K+ G  P +  +  ++    ++   + 
Sbjct: 182 LMTESAANSLIKSFGNL---GLVEELLWVWRRMKENGIDPSLYTYNFLVNGLVNSMFIES 238

Query: 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTY 200
           A +VF  M    + P+  TY ++IKG   A       L  A +   +M  K ++P+  TY
Sbjct: 239 AEKVFEVMDGGKIVPDTVTYNIMIKGYCKAGK-----LQKAMEKFRDMEMKNVKPDKITY 293

Query: 201 TAVFEAFVRAQKVDEARGLLQQMKAKGF 228
             + +A    +  D    L  +M+ +G 
Sbjct: 294 MTLIQACYSERDFDTCLSLYLEMEERGL 321


>gi|302755296|ref|XP_002961072.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
 gi|300172011|gb|EFJ38611.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
          Length = 628

 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/139 (34%), Positives = 73/139 (52%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K G    A  L  ++ D G  P+VV +TA+I+    A +  +A++   RML SG
Sbjct: 16  LIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSG 75

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  TY  LI GL       A  + DA   L E+V  G  PN  TY+ +     R ++
Sbjct: 76  CEPDLVTYNSLIHGLCM-----ANRMDDAGLVLQELVRNGFAPNHITYSTLVIWNCRRRR 130

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +D+ARGL+++M  +G V +
Sbjct: 131 LDQARGLIREMILRGSVCN 149



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 83/164 (50%), Gaps = 13/164 (7%)

Query: 75  QEIFHKMRTEG-----LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHM--PDVVAHTA 127
           + +F +M  +G     +T N V    A SK G+  +A  ++ Q+K+K     PD + +  
Sbjct: 456 ESLFDEMSAKGCFPDIITYNTV--LSAFSKAGMMSKAEGVYQQLKNKTSYCSPDAITYRI 513

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           +I+ Y  A   ++ L +   M A G + ++YTY VLI  LA   +  +K L   Q    +
Sbjct: 514 LIDGYCRAEDTEQGLTLLQEMTARGWSCDSYTYNVLIAKLAETEEVPSKALAVYQ----Q 569

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           M+ +   P+A  + ++   F+R   V+ AR ++Q+M  KG + D
Sbjct: 570 MLDQDCVPSASIFNSLVRLFLRTGDVNSARSMVQEMNEKGHLVD 613



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 76/168 (45%), Gaps = 11/168 (6%)

Query: 80  KMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIKDKG-HMPDVVAHTAVIEAYAS 134
           KM   G     V  F+ L     K G   +A QL  ++K K   +PDVV +  +I+  + 
Sbjct: 354 KMLDSGCCKPDVIFFNTLISGFCKAGRLSQAHQLLIEMKAKNICVPDVVTYNTLIDGQSK 413

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            G  K+A  +   M A G  PN  TYA LI G A        +  +A+    EM  KG  
Sbjct: 414 FGSLKQAKLLLQEMQAVGCKPNVVTYAALINGYAKHG-----MYEEAESLFDEMSAKGCF 468

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK-GFVPDEKAVKEALID 241
           P+  TY  V  AF +A  + +A G+ QQ+K K  +   +      LID
Sbjct: 469 PDIITYNTVLSAFSKAGMMSKAEGVYQQLKNKTSYCSPDAITYRILID 516



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 13/144 (9%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  SK G   +A  L  +++  G  P+VV + A+I  YA  G  +EA  +F  M A G
Sbjct: 407 LIDGQSKFGSLKQAKLLLQEMQAVGCKPNVVTYAALINGYAKHGMYEEAESLFDEMSAKG 466

Query: 153 VAPNAYTYAVLIK-----GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAF 207
             P+  TY  ++      G+ + A+G  + L +   Y          P+A TY  + + +
Sbjct: 467 CFPDIITYNTVLSAFSKAGMMSKAEGVYQQLKNKTSYC--------SPDAITYRILIDGY 518

Query: 208 VRAQKVDEARGLLQQMKAKGFVPD 231
            RA+  ++   LLQ+M A+G+  D
Sbjct: 519 CRAEDTEQGLTLLQEMTARGWSCD 542



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 5/116 (4%)

Query: 116 KGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNA 175
            G+   VV +T +I+    +G    A  +  +M  +G APN  TY  LI GL  A   + 
Sbjct: 4   NGYDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPH- 62

Query: 176 KILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
               DA + +  M+  G  P+  TY ++      A ++D+A  +LQ++   GF P+
Sbjct: 63  ----DAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELVRNGFAPN 114



 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 5/114 (4%)

Query: 112 QIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA 171
           ++ + G +PDVV +   I     AG+  + L +   M   G+ P+  T+  +I GL    
Sbjct: 177 EMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSIISGLC--- 233

Query: 172 DGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
              A  + DA +    M+ +G  P++ TY+ + +   RA ++D    +L+ M+A
Sbjct: 234 --KANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVDEVLEHMQA 285



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 86/201 (42%), Gaps = 15/201 (7%)

Query: 50  KSKLPPPYDPFKKVVDEEPTDPR--NLQEIFHKMRTEGLTNNAVK---MFDALSKDG--- 101
           +  +PP    F  ++       R  +  ++F  M   G   +++    M D LS+     
Sbjct: 215 RGGIPPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLD 274

Query: 102 LTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYA 161
              E L+    +K  G + +V  H A I A   +G+   A  + + M+ SG  PN  +Y 
Sbjct: 275 TVDEVLEHMQAMK-AGCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYN 333

Query: 162 VLIKGLAAAADGNAKILGDAQKYLMEMVGKG-MRPNAGTYTAVFEAFVRAQKVDEARGLL 220
            +I GL  +  GN     DA K   +M+  G  +P+   +  +   F +A ++ +A  LL
Sbjct: 334 FVIDGLCKS--GNVD---DAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAHQLL 388

Query: 221 QQMKAKGFVPDEKAVKEALID 241
            +MKAK     +      LID
Sbjct: 389 IEMKAKNICVPDVVTYNTLID 409



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 72/150 (48%), Gaps = 9/150 (6%)

Query: 84  EGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALR 143
           E  T+NA     AL + G    A  +   + + G +P+++++  VI+    +G   +A +
Sbjct: 293 EVYTHNA--FIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWK 350

Query: 144 VFMRMLASGVA-PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR-PNAGTYT 201
           +  +ML SG   P+   +  LI G   A       L  A + L+EM  K +  P+  TY 
Sbjct: 351 LSRKMLDSGCCKPDVIFFNTLISGFCKAGR-----LSQAHQLLIEMKAKNICVPDVVTYN 405

Query: 202 AVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            + +   +   + +A+ LLQ+M+A G  P+
Sbjct: 406 TLIDGQSKFGSLKQAKLLLQEMQAVGCKPN 435



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 3/135 (2%)

Query: 97  LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
           L K G   + L++  ++   G  PDVV   ++I     A +  +A +VF  ML  G  P+
Sbjct: 197 LCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPD 256

Query: 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
           + TY++++  L+ A   N     D     M+ +  G      T+ A   A  R+ K   A
Sbjct: 257 SLTYSIMLDNLSRA---NRLDTVDEVLEHMQAMKAGCVMEVYTHNAFIGALCRSGKFPLA 313

Query: 217 RGLLQQMKAKGFVPD 231
           + +L  M   G +P+
Sbjct: 314 KNILLGMIESGSLPN 328



 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 5/84 (5%)

Query: 148 MLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAF 207
           M A+G   +  TY  LI GL  + D +A     AQ  L +M   G  PN  TYTA+ +  
Sbjct: 1   MAANGYDASVVTYTTLIDGLCKSGDLDA-----AQALLQKMADAGCAPNVVTYTALIDGL 55

Query: 208 VRAQKVDEARGLLQQMKAKGFVPD 231
            +A++  +A   +++M   G  PD
Sbjct: 56  CKARRPHDAIQTVKRMLRSGCEPD 79


>gi|410109901|gb|AFV61030.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           microcephala]
          Length = 431

 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 68/135 (50%), Gaps = 5/135 (3%)

Query: 97  LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
             KDG    A  +F  I   G  P VV++  ++  Y   G   E  R+   MLASGV P+
Sbjct: 152 FCKDGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPD 211

Query: 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
            YTY+VLI GL   +      + DA +   EM+ KG+ PN  T+T + +   +  +VD A
Sbjct: 212 VYTYSVLINGLCKESK-----MDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLA 266

Query: 217 RGLLQQMKAKGFVPD 231
             + +QM ++   PD
Sbjct: 267 MEIYKQMLSQSLSPD 281



 Score = 73.6 bits (179), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 85/201 (42%), Gaps = 35/201 (17%)

Query: 63  VVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM 119
           +  E   D  N  E+F +M  +GL  N V    + D   K+G    A++++ Q+  +   
Sbjct: 222 LCKESKMDDAN--ELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 279

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN----- 174
           PD++ +  +I      G  K+A  +   M   G+ P+  TY  LI G     D +     
Sbjct: 280 PDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEH 339

Query: 175 -----------------AKILG--------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
                            A I G        DA+K L EM+  G++P+A TYT +   F +
Sbjct: 340 RKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCK 399

Query: 210 AQKVDEARGLLQQMKAKGFVP 230
              V +   LL++M+  G VP
Sbjct: 400 KGDVWKGSKLLKEMQRDGHVP 420


>gi|224099199|ref|XP_002311400.1| predicted protein [Populus trichocarpa]
 gi|222851220|gb|EEE88767.1| predicted protein [Populus trichocarpa]
          Length = 548

 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 83/159 (52%), Gaps = 10/159 (6%)

Query: 77  IFHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +F  M+  G++ N V  F+ L     KDG  H+A +L   + + G  PD+   +++I+  
Sbjct: 321 VFKVMQDRGVSPNLVT-FNTLISGHCKDGEVHKARELLQMLLELGLKPDIFTFSSIIDCL 379

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             A Q  +AL  F  M+  G++PNA TY +LI+ L    D     +G + K L +M   G
Sbjct: 380 CRAQQFDDALGCFSEMVEWGISPNAVTYNILIRSLCLIGD-----VGRSMKLLKDMRKDG 434

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + P+  ++ A+ ++F R  KV++A  +   M   G +P+
Sbjct: 435 ISPDIFSFNALIQSFCRMGKVEKAEKMFVSMSTLGLIPN 473



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 5/136 (3%)

Query: 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
           GL     ++F QI   G  P    + AVI+A   +     A   F +M A    P+ +TY
Sbjct: 33  GLAKYCEEIFGQISFLGITPSTRLYNAVIDALVKSNSLDLAYLKFQQMSADNCKPDRFTY 92

Query: 161 AVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
            +LI G+         ++ +A + + +M G G   N  TYT +   F  A++VDEA  + 
Sbjct: 93  NMLIHGVCKIG-----VVDEALRLVKQMEGFGYSANVYTYTNLIYGFCNAKRVDEAFRVF 147

Query: 221 QQMKAKGFVPDEKAVK 236
           + MK +   P+E  ++
Sbjct: 148 ETMKLRNVNPNEATIR 163



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/154 (23%), Positives = 72/154 (46%), Gaps = 8/154 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
            F +M   G++ NAV    +  +L   G    +++L   ++  G  PD+ +  A+I+++ 
Sbjct: 391 CFSEMVEWGISPNAVTYNILIRSLCLIGDVGRSMKLLKDMRKDGISPDIFSFNALIQSFC 450

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G+ ++A ++F+ M   G+ PN YTY  L+K L      +     +A+K    M   G 
Sbjct: 451 RMGKVEKAEKMFVSMSTLGLIPNNYTYGALVKALFELGRCD-----EAKKMFFSMEVNGC 505

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
            P++ T   + E   +    +E + + +    +G
Sbjct: 506 VPDSFTCNLISENLFKQGDFEELQNIAKICSERG 539



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 67/139 (48%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K G   E  +   Q+     + DV ++  +I+ +  A    +A+ VF  M   G
Sbjct: 270 LIETLYKAGRGMEGDRYLNQMVKDRLVSDVFSYNMLIDCFCKANVMNKAVMVFKVMQDRG 329

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V+PN  T+  LI G     DG       A++ L  ++  G++P+  T++++ +   RAQ+
Sbjct: 330 VSPNLVTFNTLISG--HCKDGEVH---KARELLQMLLELGLKPDIFTFSSIIDCLCRAQQ 384

Query: 213 VDEARGLLQQMKAKGFVPD 231
            D+A G   +M   G  P+
Sbjct: 385 FDDALGCFSEMVEWGISPN 403



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/152 (28%), Positives = 62/152 (40%), Gaps = 12/152 (7%)

Query: 74  LQEIFHKMRTEGLT-----NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
            +EIF ++   G+T      NAV   DAL K      A   F Q+      PD   +  +
Sbjct: 38  CEEIFGQISFLGITPSTRLYNAV--IDALVKSNSLDLAYLKFQQMSADNCKPDRFTYNML 95

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I      G   EALR+  +M   G + N YTY  LI G       NAK + +A +    M
Sbjct: 96  IHGVCKIGVVDEALRLVKQMEGFGYSANVYTYTNLIYGFC-----NAKRVDEAFRVFETM 150

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
             + + PN  T  ++     R     EA  L+
Sbjct: 151 KLRNVNPNEATIRSLVHGVFRCVAPREAFELV 182



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 66/165 (40%), Gaps = 30/165 (18%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   + K G+  EAL+L  Q++  G+  +V  +T +I  + +A +  EA RVF  M    
Sbjct: 95  LIHGVCKIGVVDEALRLVKQMEGFGYSANVYTYTNLIYGFCNAKRVDEAFRVFETMKLRN 154

Query: 153 VAPNAYTYAVLIKGLA------------------------AAADGNAKILG------DAQ 182
           V PN  T   L+ G+                          A D     L       +A 
Sbjct: 155 VNPNEATIRSLVHGVFRCVAPREAFELVIDFIEKEPVLGRLACDTLLCCLSEKCMPREAG 214

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
             L ++  +G  P++ T+       ++   V+E  G+L +  A+G
Sbjct: 215 ALLRKLGERGYLPDSSTFNITMTCLLKGLDVNETCGILDKFIARG 259


>gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
           EFFECT EMBRYO ARREST 40; Flags: Precursor
 gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana]
 gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana]
 gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 754

 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 81/159 (50%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F +MR++G   +      + D+L   G   EAL +  Q++  G    V+ +  +I+ +
Sbjct: 421 ELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGF 480

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             A + +EA  +F  M   GV+ N+ TY  LI GL       ++ + DA + + +M+ +G
Sbjct: 481 CKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLC-----KSRRVEDAAQLMDQMIMEG 535

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +P+  TY ++   F R   + +A  ++Q M + G  PD
Sbjct: 536 QKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPD 574



 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 84/184 (45%), Gaps = 15/184 (8%)

Query: 72  RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R  +EIF +M   G++ N+V    + D L K     +A QL  Q+  +G  PD   + ++
Sbjct: 487 REAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSL 546

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           +  +   G  K+A  +   M ++G  P+  TY  LI GL  A  G  ++   A K L  +
Sbjct: 547 LTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKA--GRVEV---ASKLLRSI 601

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFR 248
             KG+      Y  V +   R +K  EA  L ++M  +   P + AV   ++      FR
Sbjct: 602 QMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPD-AVSYRIV------FR 654

Query: 249 GVIN 252
           G+ N
Sbjct: 655 GLCN 658



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 63/137 (45%), Gaps = 6/137 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDK-GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
              K+G   +AL    ++ ++ G  PD      ++     AG  K A+ +   ML  G  
Sbjct: 268 GFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYD 327

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
           P+ YTY  +I GL    +     + +A + L +M+ +   PN  TY  +     +  +V+
Sbjct: 328 PDVYTYNSVISGLCKLGE-----VKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVE 382

Query: 215 EARGLLQQMKAKGFVPD 231
           EA  L + + +KG +PD
Sbjct: 383 EATELARVLTSKGILPD 399



 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 72/169 (42%), Gaps = 9/169 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+  +M T   + N V    +   L K+    EA +L   +  KG +PDV    ++I+  
Sbjct: 351 EVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGL 410

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
                 + A+ +F  M + G  P+ +TY +LI  L +        L +A   L +M   G
Sbjct: 411 CLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGK-----LDEALNMLKQMELSG 465

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
              +  TY  + + F +A K  EA  +  +M+  G V         LID
Sbjct: 466 CARSVITYNTLIDGFCKANKTREAEEIFDEMEVHG-VSRNSVTYNTLID 513



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 5/140 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K G    A+++   +  +G+ PDV  + +VI      G+ KEA+ V  +M+   
Sbjct: 301 LVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRD 360

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            +PN  TY  LI  L          + +A +    +  KG+ P+  T+ ++ +     + 
Sbjct: 361 CSPNTVTYNTLISTLCKENQ-----VEEATELARVLTSKGILPDVCTFNSLIQGLCLTRN 415

Query: 213 VDEARGLLQQMKAKGFVPDE 232
              A  L ++M++KG  PDE
Sbjct: 416 HRVAMELFEEMRSKGCEPDE 435



 Score = 46.6 bits (109), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 6/108 (5%)

Query: 128 VIEAYASAGQGKEALRVFMRMLAS-GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
           +IE+YA      E L V   M+   G+ P+ + Y  ++  L    DGN+  L +     M
Sbjct: 124 LIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLV---DGNSLKLVEISHAKM 180

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
            +   G++P+  T+  + +A  RA ++  A  +L+ M + G VPDEK 
Sbjct: 181 SV--WGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKT 226



 Score = 44.7 bits (104), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 12/164 (7%)

Query: 74  LQEIFH-KMRTEGLTNNAVKMFD----ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           L EI H KM   G+  + V  F+    AL +      A+ +   +   G +PD    T V
Sbjct: 172 LVEISHAKMSVWGIKPD-VSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTV 230

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           ++ Y   G    ALR+  +M+  G + +  +  V++ G     +G  +   DA  ++ EM
Sbjct: 231 MQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGF--CKEGRVE---DALNFIQEM 285

Query: 189 VGK-GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             + G  P+  T+  +     +A  V  A  ++  M  +G+ PD
Sbjct: 286 SNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPD 329


>gi|410109895|gb|AFV61027.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           urticoides]
          Length = 412

 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 113/239 (47%), Gaps = 19/239 (7%)

Query: 2   AATAILRWLLHSPSPKRS-LRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPF 60
           +A+A+   +L +   +RS + + +  + A L+      + +  +  +  + KL  P+D  
Sbjct: 34  SASAVFAAVLETXGNQRSDIYVFSGLITAYLESGFLRDAIECYR--LTREHKLWVPFDTC 91

Query: 61  KKVVDEEPTDPRNLQEI--FHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIK 114
           +KV+ E     +  + +  F++   E     ++  F+ L     KDG    A  +F  I 
Sbjct: 92  RKVL-EHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAIT 150

Query: 115 DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA--AAAD 172
             G  P VV++  ++  Y   G   E  R+   MLASGV P+ YTY+VLI GL   +  D
Sbjct: 151 KWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMD 210

Query: 173 GNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G       A     EM+ KG+ PN  T+T + +   +  +VD A  + +QM ++  +PD
Sbjct: 211 G-------ANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPD 262



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 81/187 (43%), Gaps = 33/187 (17%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M  +GL  N V    + D   K+G    A++++ Q+  +  +PD++ +  +I    
Sbjct: 215 LFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLC 274

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN------------------- 174
             G  K+A  +   M   G+ P+ +TY  LI G     D +                   
Sbjct: 275 KKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDV 334

Query: 175 ---AKILG--------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
              A I G        DA+K L EM+  G++P+ GTYT +   F +   V +   LL++M
Sbjct: 335 AYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIVNEFCKKGDVWKGSKLLKEM 394

Query: 224 KAKGFVP 230
           +  G  P
Sbjct: 395 QRDGHAP 401


>gi|255660852|gb|ACU25595.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 418

 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 88/188 (46%), Gaps = 12/188 (6%)

Query: 50  KSKLPPPYDPFKKVVDEEPTDPRNLQEI--FHKMRTEGLTNNAVKMFDAL----SKDGLT 103
           + K+  P+D  +KV+ E   + R  + +  F+K   E     ++  F+ L     K+G  
Sbjct: 94  QHKIRVPFDTCRKVL-EHLMEFRYFKLVWDFYKEVLECGYPASLYFFNILMQRFCKEGEM 152

Query: 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
             A  +F  I   G  P VV+   +I  Y   G   E  R+   M ASG  P+ YTY++L
Sbjct: 153 RLAQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSIL 212

Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           I GL          L +A +   EM+  G+ PN  T+T +     + +KVD A  + +QM
Sbjct: 213 INGLCKEGK-----LDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQM 267

Query: 224 KAKGFVPD 231
            ++G  PD
Sbjct: 268 LSQGLSPD 275



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 78/158 (49%), Gaps = 8/158 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           EI+ +M ++GL+ + +    +   L K G   +   L  ++   G  PD +++T +I+  
Sbjct: 262 EIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKISYTTLIDGS 321

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G  + AL +  +M+   +  +   Y  LI  L    +G A    DA+K L EM+  G
Sbjct: 322 CKEGDLEIALELRNKMIQESIRLDDVAYTALISCLCR--EGRA---SDAEKMLREMLSVG 376

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           ++P+ GTYT +   F + +    A  LL++M+  G +P
Sbjct: 377 LKPDNGTYTMIINEFCKKRDSKTASKLLREMQRDGPLP 414



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 79/161 (49%), Gaps = 10/161 (6%)

Query: 75  QEIFHKMRTEGLTNNAVKMFDALSKDGLTHE----ALQLFAQIKDKGHMPDVVAHTAVIE 130
            E+F++M   GL  N V  F  L      +E    A++++ Q+  +G  PD++ +  +I 
Sbjct: 226 NELFNEMLDNGLVPNGVT-FTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIY 284

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
                G+ K+   +   M+ +G+ P+  +Y  LI G  +  +G+ +I   A +   +M+ 
Sbjct: 285 GLCKKGELKQVHDLIDEMIMNGLKPDKISYTTLIDG--SCKEGDLEI---ALELRNKMIQ 339

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + +R +   YTA+     R  +  +A  +L++M + G  PD
Sbjct: 340 ESIRLDDVAYTALISCLCREGRASDAEKMLREMLSVGLKPD 380



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 70/142 (49%), Gaps = 5/142 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K+G   EA +LF ++ D G +P+ V  T +I  +    +   A+ ++ +ML+ G
Sbjct: 212 LINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQG 271

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           ++P+  TY  LI GL    +     L      + EM+  G++P+  +YT + +   +   
Sbjct: 272 LSPDLITYNTLIYGLCKKGE-----LKQVHDLIDEMIMNGLKPDKISYTTLIDGSCKEGD 326

Query: 213 VDEARGLLQQMKAKGFVPDEKA 234
           ++ A  L  +M  +    D+ A
Sbjct: 327 LEIALELRNKMIQESIRLDDVA 348


>gi|357130244|ref|XP_003566760.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g40400-like [Brachypodium distachyon]
          Length = 579

 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 81/163 (49%), Gaps = 8/163 (4%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D    Q    ++  +G   + V    +     + G   +AL LF  +  +G  PD+V+HT
Sbjct: 229 DAERAQGFLEELEEQGFEPDVVTYNTLLSGYCRRGKLQDALHLFGVMPPRGVEPDLVSHT 288

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
            +++    AG+  +A R+F RM+ SGV+P+A  Y+VLI G       N + + +A+  LM
Sbjct: 289 VLMDGLCKAGRLNDARRMFDRMVHSGVSPDAIAYSVLIAGYC-----NEQRVREARLLLM 343

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFV 229
           EMVG G+        AV E+ V+  K+     L+  ++  G V
Sbjct: 344 EMVGSGLSSEGFALRAVIESHVKVGKLLTCLNLVSPLRKYGVV 386



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 66/125 (52%), Gaps = 5/125 (4%)

Query: 112 QIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA 171
           +++++G  PDVV +  ++  Y   G+ ++AL +F  M   GV P+  ++ VL+ GL  A 
Sbjct: 239 ELEEQGFEPDVVTYNTLLSGYCRRGKLQDALHLFGVMPPRGVEPDLVSHTVLMDGLCKAG 298

Query: 172 DGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
                 L DA++    MV  G+ P+A  Y+ +   +   Q+V EAR LL +M   G   +
Sbjct: 299 R-----LNDARRMFDRMVHSGVSPDAIAYSVLIAGYCNEQRVREARLLLMEMVGSGLSSE 353

Query: 232 EKAVK 236
             A++
Sbjct: 354 GFALR 358



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 60/139 (43%), Gaps = 10/139 (7%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +  AL +D   H A  LF  + + GH P +  +  +++         +AL V + M +  
Sbjct: 395 LIGALCEDMRPHAARGLFKWMVEDGHSPSLEMYNMILDCLCQCDSVDDALDVKVEMSSRE 454

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V P+ +TY  L+  L            D +  + EM+  G++PN    TA+   F +   
Sbjct: 455 VRPDFHTYQALVTCLCRLGKSL-----DGKSVMAEMIESGLQPNEAICTALVCGFCKEGY 509

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +D A  +L     K FV D
Sbjct: 510 LDRAELIL-----KAFVLD 523



 Score = 41.6 bits (96), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 70/160 (43%), Gaps = 8/160 (5%)

Query: 81  MRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140
           + +EG    AV   ++  K G     L L + ++  G +  + ++  +I A     +   
Sbjct: 350 LSSEGFALRAV--IESHVKVGKLLTCLNLVSPLRKYGVVIPLESYNCLIGALCEDMRPHA 407

Query: 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTY 200
           A  +F  M+  G +P+   Y +++  L          + DA    +EM  + +RP+  TY
Sbjct: 408 ARGLFKWMVEDGHSPSLEMYNMILDCLC-----QCDSVDDALDVKVEMSSREVRPDFHTY 462

Query: 201 TAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
            A+     R  K  + + ++ +M   G  P+E A+  AL+
Sbjct: 463 QALVTCLCRLGKSLDGKSVMAEMIESGLQPNE-AICTALV 501



 Score = 37.7 bits (86), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 13/39 (33%), Positives = 24/39 (61%)

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +RPN  T+  +  A  R +  + A+G L++++ +GF PD
Sbjct: 210 VRPNTHTFNILVTALCRGEDAERAQGFLEELEEQGFEPD 248


>gi|356519743|ref|XP_003528529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Glycine max]
          Length = 556

 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 82/183 (44%), Gaps = 10/183 (5%)

Query: 53  LPPPYDPFKKVVDEEPTDPRNL--QEIFHKMRTEGLTNN---AVKMFDALSKDGLTHEAL 107
           L P    +  ++D    D   +  + +F KM   GL  N      + +   K GL  E  
Sbjct: 189 LSPNVVIYTTLIDGCCKDGNVMLAKNLFCKMNRLGLVPNPHTYSVLMNGFFKQGLQREGF 248

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
           Q++  +K  G +P+  A+  +I  Y + G   +A +VF  M   G+A    TY +LI GL
Sbjct: 249 QMYENMKRSGIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGL 308

Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
                   K  G+A K + ++   G+ PN  TY  +   F   +K+D A  L  Q+K+ G
Sbjct: 309 C-----RGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVRKMDSAVRLFNQLKSSG 363

Query: 228 FVP 230
             P
Sbjct: 364 LSP 366



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 98/224 (43%), Gaps = 18/224 (8%)

Query: 14  PSPKRSLRITNTRVNATLQRSLSSSSDQPTKKYVNTK-SKLPPPYDPFKKVVDEEPTDPR 72
           P+P     + N      LQR       +  + Y N K S + P    +  ++ E   D  
Sbjct: 226 PNPHTYSVLMNGFFKQGLQR-------EGFQMYENMKRSGIVPNAYAYNCLISEYCNDGM 278

Query: 73  --NLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
                ++F +MR +G+    +    +   L +     EA++L  ++   G  P++V +  
Sbjct: 279 VDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNI 338

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           +I  +    +   A+R+F ++ +SG++P   TY  LI G +   +     L  A   + E
Sbjct: 339 LINGFCDVRKMDSAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVEN-----LAGALDLVKE 393

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           M  + + P+  TYT + +AF R    ++A  +   M+  G VPD
Sbjct: 394 MEERCIAPSKVTYTILIDAFARLNHTEKACEMHSLMEKSGLVPD 437



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 67/144 (46%), Gaps = 5/144 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DA ++   T +A ++ + ++  G +PDV  ++ ++      G  KEA ++F  +    
Sbjct: 409 LIDAFARLNHTEKACEMHSLMEKSGLVPDVYTYSVLLHGLCVHGNMKEASKLFKSLGEMH 468

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN+  Y  +I G     +G++     A + L EMV  GM PN  ++ +      R +K
Sbjct: 469 LQPNSVIYNTMIHG--YCKEGSSY---RALRLLNEMVQSGMVPNVASFCSTIGLLCRDEK 523

Query: 213 VDEARGLLQQMKAKGFVPDEKAVK 236
             EA  LL QM   G  P     K
Sbjct: 524 WKEAELLLGQMINSGLKPSVSLYK 547



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 87/219 (39%), Gaps = 19/219 (8%)

Query: 20  LRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPF-KKVVDEEPTDPRNLQEIF 78
           LR+ + R+ ++L   L+ +   P   Y        P YD      V    TD        
Sbjct: 62  LRLISGRIPSSLMLQLTQAHFTPCSTYT-------PLYDTVVNAYVHSHSTDQA--LTFL 112

Query: 79  HKMRTEG---LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASA 135
           H M  EG   L+N    +   L +     +A  +F ++K K  + D  +   +I+    A
Sbjct: 113 HHMIHEGHVPLSNTFNNLLCLLIRSNYFDKAWWIFNELKSKV-VLDAYSFGIMIKGCCEA 171

Query: 136 GQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP 195
           G   +  R+   +   G++PN   Y  LI G     DGN  +   A+    +M   G+ P
Sbjct: 172 GYFVKGFRLLAMLEEFGLSPNVVIYTTLIDG--CCKDGNVML---AKNLFCKMNRLGLVP 226

Query: 196 NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
           N  TY+ +   F +     E   + + MK  G VP+  A
Sbjct: 227 NPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAYA 265



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 76/158 (48%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F+++++ GL+   V    +    SK      AL L  +++++   P  V +T +I+A+A
Sbjct: 355 LFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILIDAFA 414

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
                ++A  +   M  SG+ P+ YTY+VL+ GL     GN K      K L EM    +
Sbjct: 415 RLNHTEKACEMHSLMEKSGLVPDVYTYSVLLHGL--CVHGNMKEASKLFKSLGEM---HL 469

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +PN+  Y  +   + +      A  LL +M   G VP+
Sbjct: 470 QPNSVIYNTMIHGYCKEGSSYRALRLLNEMVQSGMVPN 507



 Score = 53.9 bits (128), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 5/135 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M     + G   +  +L A +++ G  P+VV +T +I+     G    A  +F +M   G
Sbjct: 164 MIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCCKDGNVMLAKNLFCKMNRLG 223

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN +TY+VL+ G          +  +  +    M   G+ PNA  Y  +   +     
Sbjct: 224 LVPNPHTYSVLMNGFFKQG-----LQREGFQMYENMKRSGIVPNAYAYNCLISEYCNDGM 278

Query: 213 VDEARGLLQQMKAKG 227
           VD+A  +  +M+ KG
Sbjct: 279 VDKAFKVFAEMREKG 293



 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 5/111 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L   G   EA +LF  + +    P+ V +  +I  Y   G    ALR+   M+ SG
Sbjct: 444 LLHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVQSG 503

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAV 203
           + PN  ++   I  L    D   K   +A+  L +M+  G++P+   Y  V
Sbjct: 504 MVPNVASFCSTIGLL--CRDEKWK---EAELLLGQMINSGLKPSVSLYKMV 549


>gi|255581046|ref|XP_002531339.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529061|gb|EEF31046.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 630

 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/153 (30%), Positives = 78/153 (50%), Gaps = 5/153 (3%)

Query: 79  HKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQG 138
           H    EG    A+   D +S +G    A++L+ ++K+KG  PD   +  +I++    G+ 
Sbjct: 271 HGFCKEGRIEEALSFIDEMSNEGKHTMAIELYNEMKNKGCQPDEFTYNMLIDSLCYRGKL 330

Query: 139 KEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAG 198
           +EAL +   M  SG A N  TY  LI G       N KI  +A++   +M  +G+  N+ 
Sbjct: 331 QEALGLLREMEISGCARNVITYNTLIDGFCK----NKKI-EEAEEIFDQMEIQGLSRNSV 385

Query: 199 TYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           TY  + +   ++++V EA  L+ QM  +G  PD
Sbjct: 386 TYNTLIDGLCKSRRVQEAAQLMDQMIMEGLKPD 418



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 78/160 (48%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +EIF +M  +GL+ N+V    + D L K     EA QL  Q+  +G  PD   + +++  
Sbjct: 369 EEIFDQMEIQGLSRNSVTYNTLIDGLCKSRRVQEAAQLMDQMIMEGLKPDKFTYNSMLTY 428

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +   G  ++A  +   M ++G  P+  TY  LI GL  A  G  ++   A + L  +  K
Sbjct: 429 FCREGDIQKAADIVQTMTSNGCEPDIVTYGTLIGGLCKA--GRVEV---ASRLLRSIQLK 483

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           GM      Y  V +A  + ++  EA  L ++M+ KG  PD
Sbjct: 484 GMVLTPHAYNPVIQALFKRKRTKEAMRLFREMEEKGNTPD 523



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 7/142 (4%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D +   +I   M + G   + V    +   L K G    A +L   I+ KG +    A+ 
Sbjct: 434 DIQKAADIVQTMTSNGCEPDIVTYGTLIGGLCKAGRVEVASRLLRSIQLKGMVLTPHAYN 493

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
            VI+A     + KEA+R+F  M   G  P+A+TY ++ +GL+ +       +G+A  +++
Sbjct: 494 PVIQALFKRKRTKEAMRLFREMEEKGNTPDAFTYKIVFRGLSNSGGP----IGEAVDFVI 549

Query: 187 EMVGKGMRPNAGTYTAVFEAFV 208
           EM+ KG  P   ++  + E   
Sbjct: 550 EMIEKGFLPEFSSFYMLAEGLC 571



 Score = 46.2 bits (108), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 13/121 (10%)

Query: 129 IEAYASAGQGKEALRVFMRM-LASGVAPNAYTYAVLIKGLAAAADGN-AKILGDAQKYLM 186
           I++YA     +E L +   M +  G+A +   Y  L+  L    DGN  K++ +      
Sbjct: 129 IDSYAKFELYEEILCIVEVMEVEFGLALDTLLYNFLLNVLV---DGNKLKLVENVHS--- 182

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
            MV KG++P+  T+  + +A  +A ++  A  ++++M + G VPDEK     +     QG
Sbjct: 183 TMVSKGIKPDVSTFNILIKALCKAHQIRPAILVMEEMSSYGLVPDEKTFTTLM-----QG 237

Query: 247 F 247
           F
Sbjct: 238 F 238



 Score = 41.6 bits (96), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 60/158 (37%), Gaps = 46/158 (29%)

Query: 116 KGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA--DG 173
           KG  PDV     +I+A   A Q + A+ V   M + G+ P+  T+  L++G       DG
Sbjct: 187 KGIKPDVSTFNILIKALCKAHQIRPAILVMEEMSSYGLVPDEKTFTTLMQGFIEEGNMDG 246

Query: 174 NAKI--------------------------------------LGDAQKYLM------EMV 189
             ++                                      + +  K+ M      EM 
Sbjct: 247 AFRVKEQMLDAGCPVTNVTVNVLVHGFCKEGRIEEALSFIDEMSNEGKHTMAIELYNEMK 306

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
            KG +P+  TY  + ++     K+ EA GLL++M+  G
Sbjct: 307 NKGCQPDEFTYNMLIDSLCYRGKLQEALGLLREMEISG 344


>gi|302756537|ref|XP_002961692.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
 gi|300170351|gb|EFJ36952.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
          Length = 1056

 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 102/235 (43%), Gaps = 18/235 (7%)

Query: 9   WLLHSPSPK----RSLRITNTRVNATLQRSLSSSS---DQPTKKYVNTKSKLPPPYDPFK 61
           W +HSP       +  R T    N TL   LS S    D         +S L P    F 
Sbjct: 454 WPIHSPEVDFLMVQVCRPTLVTYN-TLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFN 512

Query: 62  KVVDEEPTDPRNL--QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDK 116
            V+D    + R L    +F +    G   N V    + D LSK     EALQL A++ + 
Sbjct: 513 SVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVEL 572

Query: 117 GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK 176
           G   + V ++ V++     G+ ++A+ V  +M  +G  P+A TY  LI G         +
Sbjct: 573 GCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFF-----KRQ 627

Query: 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            L +A   L EM+  G  P+  TYT +     R+ + DEA  +L  M A+G  P+
Sbjct: 628 RLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPN 682



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L +D    +  +L  ++  +G  P+ V +  ++ A    G+ KEA  +  RM A+G
Sbjct: 42  VIDGLCRDNEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANG 101

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P   T+ ++IKGL    +  A     A + + EMV +G  P+   +T +  A     +
Sbjct: 102 CPPELITFGLIIKGLCKEGEIEA-----AFRVVDEMVDRGFVPDVEIHTVLLHALCELGR 156

Query: 213 VDEARGLLQQMKAKGFVPD 231
           VDEA    QQ+   GF PD
Sbjct: 157 VDEAWFFFQQVLLIGFTPD 175



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 79/169 (46%), Gaps = 8/169 (4%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++  KM   G   N V    + D L K G   +A+ +  Q++D G +PD V +  +I+ +
Sbjct: 564 QLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGF 623

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               + +EA+ +   ML +G  P+  TY  L  GL  +         +A + L  M  +G
Sbjct: 624 FKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGR-----FDEAVEILDYMAARG 678

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
             PNA TY+++ +   +A +V EA G  ++M     V        ALID
Sbjct: 679 CAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALID 727



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 77/159 (48%), Gaps = 9/159 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +MR  G   +AV    + D   K     EA+ L  ++ + G  P VV +T +     
Sbjct: 600 VLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLC 659

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV-GKG 192
            +G+  EA+ +   M A G APNA TY+ ++ GL  A       + +A  Y  +M   + 
Sbjct: 660 RSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGR-----VTEALGYFEKMARDEV 714

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + P+   Y+A+ +   +A ++DEA   L++M   G +PD
Sbjct: 715 VAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPD 753



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 74/157 (47%), Gaps = 9/157 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQI-KDKGHMPDVVAHTAVIEA 131
           EI   M   G   NA+    + D L K G   EAL  F ++ +D+   P V+A++A+I+ 
Sbjct: 669 EILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDG 728

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              AG+  EA     RM+ +G  P+  T+++LI GL  A   +  +     +    M  +
Sbjct: 729 LCKAGRIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGL-----ELFCGMAER 783

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
           G + +   Y A+  A+    +   A  LL++MK  G 
Sbjct: 784 GCKADIYAYNAMINAYCLKGEFSAAYALLEEMKTHGI 820



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 73/142 (51%), Gaps = 5/142 (3%)

Query: 103  THEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAV 162
            + +AL+L   +   G  PD   +  V++    AG  + A ++   M + G +P+  TY +
Sbjct: 873  SEQALELLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGHSPDLRTYTI 932

Query: 163  LIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
            +I GL+      AK L  A  Y  EM+ K ++P+A  Y+++ +AF +A KVD+A  LL+ 
Sbjct: 933  MISGLS-----KAKQLPLACDYFEEMLRKNLKPDAIVYSSLIDAFCKADKVDDAWKLLRS 987

Query: 223  MKAKGFVPDEKAVKEALIDKRG 244
               +  +     + ++L   RG
Sbjct: 988  SGIEPTITMYSTMVDSLCKNRG 1009



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 68/155 (43%), Gaps = 30/155 (19%)

Query: 97  LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
           L K+G    A ++  ++ D+G +PDV  HT ++ A    G+  EA   F ++L  G  P+
Sbjct: 116 LCKEGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPD 175

Query: 157 AYTYAVLIKGL----------------------------AAAADGNAKI--LGDAQKYLM 186
           A TY  ++ GL                              A DG +K   L  A ++  
Sbjct: 176 AVTYNTMVDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFD 235

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221
            M   G+ PN  TY A+ +   +A K+D A GLL+
Sbjct: 236 SMPQTGVSPNTVTYDALIDGLCKAGKLDIALGLLR 270



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 84/179 (46%), Gaps = 25/179 (13%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIK-DKGHMPDVVAHTAVIEA 131
           E+F  M+  G + + +    +   L K     EA +    ++  +G  P+VV  + +I+ 
Sbjct: 331 ELFDVMKESGCSADVITYNILLKGLCKLRRIPEAYRHVELMRRTEGCSPNVVTFSTLIQG 390

Query: 132 YASAGQGKEALRVFMRMLA-SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME--- 187
             +AG+  +A  V+ RM+A  G++PN +TYA L++GL  A  G+++ L    + ++E   
Sbjct: 391 LCNAGRVNQAWEVYERMVAVEGISPNRFTYAFLLEGLCKA--GDSRRLEQCFEQMLEREW 448

Query: 188 ---------------MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
                          ++ +  RP   TY  +     ++  V +A GLL+ M   G  PD
Sbjct: 449 RSSSSWPIHSPEVDFLMVQVCRPTLVTYNTLVTGLSKSGMVRDALGLLEFMIESGLSPD 507



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 68/171 (39%), Gaps = 36/171 (21%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L   G     L+LF  + ++G   D+ A+ A+I AY   G+   A  +   M   G
Sbjct: 760 LINGLCDAGRIDTGLELFCGMAERGCKADIYAYNAMINAYCLKGEFSAAYALLEEMKTHG 819

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKI-------------LGDAQKY--------------- 184
           +A N  T+ ++IK L     GN +I               D   Y               
Sbjct: 820 IAKNTVTHGIVIKALC----GNDRIDEAVSYFHSIPEDCRDEISYNTLITSLVASRRSEQ 875

Query: 185 ----LMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
               L  MV  G  P+A  Y  V +   +A   + A  LLQ+M+++G  PD
Sbjct: 876 ALELLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGHSPD 926



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K G   +A   F +    G  P VV ++ VI+      +  +  ++   M   G
Sbjct: 7   LINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEEMAGRG 66

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            APNA TY  L+  L     G AK   +A   L  M   G  P   T+  + +   +  +
Sbjct: 67  CAPNAVTYNTLVNAL--LGQGRAK---EAFSLLERMAANGCPPELITFGLIIKGLCKEGE 121

Query: 213 VDEARGLLQQMKAKGFVPD 231
           ++ A  ++ +M  +GFVPD
Sbjct: 122 IEAAFRVVDEMVDRGFVPD 140



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 66/142 (46%), Gaps = 8/142 (5%)

Query: 89   NAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRM 148
            N + + D L K G    A +L  +++ +GH PD+  +T +I   + A Q   A   F  M
Sbjct: 894  NYMTVMDGLFKAGSPEVAAKLLQEMRSRGHSPDLRTYTIMISGLSKAKQLPLACDYFEEM 953

Query: 149  LASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFV 208
            L   + P+A  Y+ LI          A  + DA K L      G+ P    Y+ + ++  
Sbjct: 954  LRKNLKPDAIVYSSLIDAFC-----KADKVDDAWKLLRS---SGIEPTITMYSTMVDSLC 1005

Query: 209  RAQKVDEARGLLQQMKAKGFVP 230
            + +  D+A  ++++MK+K   P
Sbjct: 1006 KNRGTDKALEVIREMKSKNCEP 1027



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 5/110 (4%)

Query: 122 VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDA 181
           +V +  +I     AG+  +A   F + +  G  P   TY+ +I GL    +     +   
Sbjct: 1   MVTYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNE-----VDKG 55

Query: 182 QKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            K L EM G+G  PNA TY  +  A +   +  EA  LL++M A G  P+
Sbjct: 56  CKLLEEMAGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPE 105



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 72/181 (39%), Gaps = 27/181 (14%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F ++   G T +AV    M D L K G    A  +   + +    P V   T  ++  + 
Sbjct: 164 FQQVLLIGFTPDAVTYNTMVDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSK 223

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA----------DGNAK-------- 176
           AG    A   F  M  +GV+PN  TY  LI GL  A           D N++        
Sbjct: 224 AGNLTGAYEFFDSMPQTGVSPNTVTYDALIDGLCKAGKLDIALGLLRDKNSQAGMFAFSS 283

Query: 177 -ILGDAQKYLMEMVGKGMR-----PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
            + G  Q + +E   + ++     PN   + ++     +A++VDEA  L   MK  G   
Sbjct: 284 LLHGLCQAHRLEEAIQLLKAMPCVPNVVCFNSLMNGLCQARRVDEAFELFDVMKESGCSA 343

Query: 231 D 231
           D
Sbjct: 344 D 344



 Score = 47.0 bits (110), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 66/130 (50%), Gaps = 10/130 (7%)

Query: 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
            EA+QL   +K    +P+VV   +++     A +  EA  +F  M  SG + +  TY +L
Sbjct: 295 EEAIQL---LKAMPCVPNVVCFNSLMNGLCQARRVDEAFELFDVMKESGCSADVITYNIL 351

Query: 164 IKGLAAAADGNAKILGDAQKYLMEM-VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
           +KGL        + + +A +++  M   +G  PN  T++ + +    A +V++A  + ++
Sbjct: 352 LKGLC-----KLRRIPEAYRHVELMRRTEGCSPNVVTFSTLIQGLCNAGRVNQAWEVYER 406

Query: 223 MKA-KGFVPD 231
           M A +G  P+
Sbjct: 407 MVAVEGISPN 416



 Score = 43.5 bits (101), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 5/88 (5%)

Query: 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218
           TY VLI GL  A       + DA     + +  G RP   TY+ V +   R  +VD+   
Sbjct: 3   TYNVLINGLCKAGR-----VCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCK 57

Query: 219 LLQQMKAKGFVPDEKAVKEALIDKRGQG 246
           LL++M  +G  P+       +    GQG
Sbjct: 58  LLEEMAGRGCAPNAVTYNTLVNALLGQG 85


>gi|238908350|emb|CAZ40335.1| non restoring pentatricopeptide repeat [Raphanus sativus]
          Length = 683

 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 80/160 (50%), Gaps = 8/160 (5%)

Query: 72  RNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           R ++EI H ++   +  +A+   D L KDG   ++  LF +++DKG  P++V +  +I  
Sbjct: 241 RKMEEISH-IKPNVVIYSAI--IDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGG 297

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +  +G+   A R+   ML   ++PN  TY  LI           K    A+ Y  EM+ +
Sbjct: 298 FCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVK----EGKFFEAAELY-DEMLPR 352

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G+ PN  TY ++ + F +  ++D A  +   M  KG  PD
Sbjct: 353 GIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPD 392



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 78/161 (48%), Gaps = 8/161 (4%)

Query: 72  RNLQEIFH-KMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           R LQE+   K+    +T NA  + +A  K+G   EA +L+ ++  +G +P+ + + ++I+
Sbjct: 309 RLLQEMLERKISPNVVTYNA--LINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMID 366

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
            +    +   A  +F  M   G +P+ +T+  LI G   A     K + D  + L EM  
Sbjct: 367 GFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGA-----KRIDDGMELLHEMPR 421

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +G+  N  TY  +   F     ++ A  L QQM + G  PD
Sbjct: 422 RGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPD 462



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 78/170 (45%), Gaps = 19/170 (11%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+ H+M   GL  N V    +       G  + AL L  Q+   G  PD+V    +++  
Sbjct: 414 ELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGL 473

Query: 133 ASAGQGKEALRVFMRMLAS-----------GVAPNAYTYAVLIKGLAAAADGNAKILGDA 181
              G+ K+AL +F  M  S           GV P+  TY +LI GL        K L +A
Sbjct: 474 CDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLI----NEGKFL-EA 528

Query: 182 QKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           ++   EM  +G+ P+  TY+++ +   +  ++DEA  +   M +K F P+
Sbjct: 529 EELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPN 578



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 67/153 (43%), Gaps = 8/153 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E++ +M   G+  + +    M D L K     EA Q+F  +  K   P+VV    +I  
Sbjct: 529 EELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLING 588

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y  AG+  + L +F  M   G+  +A  Y  LI G     + N      A     EM+  
Sbjct: 589 YCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNING-----ALDIFQEMISS 643

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           G+ P+  T   +   F   ++++ A  +L+ ++
Sbjct: 644 GVYPDTITIRNMLTGFWSKEELERAVAMLEDLQ 676



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 80/178 (44%), Gaps = 19/178 (10%)

Query: 76  EIFHKMRTEGLTNNAVKMFDALSKDGLTH--------------EALQLFAQIKDKGHMPD 121
           E+F  M+   +  +A   F+ +  D LT+              EA +L+ ++  +G +PD
Sbjct: 484 EMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPD 543

Query: 122 VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDA 181
            + ++++I+      +  EA ++F+ M +   +PN  T+  LI G   A       + D 
Sbjct: 544 TITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGR-----VDDG 598

Query: 182 QKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
            +   EM  +G+  +A  Y  +   F +   ++ A  + Q+M + G  PD   ++  L
Sbjct: 599 LELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNML 656



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 11/157 (7%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F K+   GL  + V    +   L  D    EAL LF QI      PDV+  T ++     
Sbjct: 139 FGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQI----CRPDVLTFTTLMNGLCR 194

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            G+  EA+ +  RM+ +G+ P+  TY   + G+    D     L   +K  ME +   ++
Sbjct: 195 EGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGD-TVSALNLLRK--MEEISH-IK 250

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           PN   Y+A+ +   +  +  ++  L  +M+ KG  P+
Sbjct: 251 PNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPN 287



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 62/152 (40%), Gaps = 8/152 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E++ +M   G+  N +    M D   K      A  +F  +  KG  PDV   T +I+ Y
Sbjct: 344 ELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGY 403

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             A +  + + +   M   G+  N  TY  LI G     D NA     A     +M+  G
Sbjct: 404 CGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNA-----ALDLSQQMISSG 458

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           + P+  T   + +      K+ +A  + + M+
Sbjct: 459 VCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQ 490



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 9/127 (7%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
            + L+ +++ K    D+ + T +I+ + S  +   AL  F ++   G+ P+  T+  L+ 
Sbjct: 100 VISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLH 159

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           GL          L       +++  +  RP+  T+T +     R  +V EA  LL +M  
Sbjct: 160 GLC---------LDHRVSEALDLFHQICRPDVLTFTTLMNGLCREGRVVEAVALLDRMVE 210

Query: 226 KGFVPDE 232
            G  PD+
Sbjct: 211 NGLQPDQ 217



 Score = 45.8 bits (107), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 65/151 (43%), Gaps = 12/151 (7%)

Query: 91  VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           +K F + SK      AL  F ++   G  PDVV  T ++       +  EAL +F ++  
Sbjct: 123 IKCFCSCSKLPF---ALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQI-- 177

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
               P+  T+  L+ GL        +++ +A   L  MV  G++P+  TY    +   + 
Sbjct: 178 --CRPDVLTFTTLMNGLCR----EGRVV-EAVALLDRMVENGLQPDQITYGTFVDGMCKM 230

Query: 211 QKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
                A  LL++M+    +     +  A+ID
Sbjct: 231 GDTVSALNLLRKMEEISHIKPNVVIYSAIID 261


>gi|414591629|tpg|DAA42200.1| TPA: hypothetical protein ZEAMMB73_531547 [Zea mays]
          Length = 462

 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/152 (35%), Positives = 75/152 (49%), Gaps = 10/152 (6%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
           +L K G   E   +F  +  KG  PDV ++T ++  YA+ G   +   +F  ML  G+AP
Sbjct: 3   SLCKYGKIKEDRDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAP 62

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           + YT+ VLIK  A     N  +L  A     EM   G++P+  TY  V  A  R  K+D+
Sbjct: 63  DIYTFNVLIKAYA-----NCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDD 117

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALIDKRGQGF 247
           A     QM  +G VPD+ A    LI    QGF
Sbjct: 118 AMEKFNQMIDQGVVPDKYAY-HCLI----QGF 144



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 78/163 (47%), Gaps = 10/163 (6%)

Query: 73  NLQEIFHKMRTEGLTNNAVKMFDALSK----DGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           ++ ++F  M  +G+  + +  F+ L K     G+  +A+ +F +++D G  P VV +  V
Sbjct: 47  DMTDLFDLMLGDGIAPD-IYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTV 105

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I A    G+  +A+  F +M+  GV P+ Y Y  LI+G           L  A++ + E+
Sbjct: 106 IAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGS-----LLKAKELISEI 160

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +  GMR +   + ++     +  +V +A+ +       G  PD
Sbjct: 161 MNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPD 203



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 74/167 (44%), Gaps = 21/167 (12%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+  ++   G+  + V    + + L K G   +A  +F    + G  PD V +  +++ 
Sbjct: 154 KELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDG 213

Query: 132 YASAGQGKEALRVFMRMLASGVAPNA-------------YTYAVLIKGLAAAADGNAKIL 178
           Y   G+ ++ALRVF  M+++G+ PN                Y ++I GL  A        
Sbjct: 214 YCLVGKMEKALRVFDAMVSAGIEPNVVGEMLQKGIKPSTILYNIIIDGLFEAGRTVP--- 270

Query: 179 GDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
             A+    EM   G+  N  TY+ V     + +  DEA  L ++++A
Sbjct: 271 --AKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRA 315



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M +  +  G   +   LF  +   G  PD+     +I+AYA+ G   +A+ +F  M   G
Sbjct: 35  MLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHG 94

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V P+  TY  +I  L          + DA +   +M+ +G+ P+   Y  + + F     
Sbjct: 95  VKPHVVTYMTVIAALCRIGK-----MDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGS 149

Query: 213 VDEARGLLQQMKAKGFVPD 231
           + +A+ L+ ++   G   D
Sbjct: 150 LLKAKELISEIMNNGMRLD 168



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 75/176 (42%), Gaps = 16/176 (9%)

Query: 85  GLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRV 144
           G    A+++FDA+   G+    +    ++  KG  P  + +  +I+    AG+   A   
Sbjct: 218 GKMEKALRVFDAMVSAGIEPNVV---GEMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVK 274

Query: 145 FMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVF 204
           F  M  SG+A N  TY+++++GL        +   +A     E+    ++ +  T   + 
Sbjct: 275 FHEMTESGIAMNKCTYSIVLRGLF-----KNRCFDEAIFLFKELRAMNVKIDIITLNTMI 329

Query: 205 EAFVRAQKVDEARGLLQQMKAKGFVPD--------EKAVKEALIDKRGQGFRGVIN 252
               + ++V+EA+ L   +   G VP            +KE L+++    F  + N
Sbjct: 330 AGMFQTRRVEEAKDLFASISRSGLVPCAVTYSIMITNLIKEGLVEEAEDMFSSMQN 385



 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 32/154 (20%), Positives = 64/154 (41%), Gaps = 8/154 (5%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           FH+M   G+  N      +   L K+    EA+ LF +++      D++    +I     
Sbjct: 275 FHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQ 334

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
             + +EA  +F  +  SG+ P A TY+++I  L         ++ +A+     M   G  
Sbjct: 335 TRRVEEAKDLFASISRSGLVPCAVTYSIMITNLIKEG-----LVEEAEDMFSSMQNAGCE 389

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
           P++     V    ++  ++  A   L ++  + F
Sbjct: 390 PDSRLLNHVVRELLKKNEIVRAGAYLSKIDERNF 423



 Score = 40.0 bits (92), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 35/164 (21%), Positives = 71/164 (43%), Gaps = 13/164 (7%)

Query: 76  EIFHKMRTEGLTNNAVKMFDALSKDGLTHEAL----QLFAQIKDKGHMPDVVAHTAVIEA 131
           E F++M  +G+  +    +  L +   TH +L    +L ++I + G   D+V   ++I  
Sbjct: 120 EKFNQMIDQGVVPDKYA-YHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINN 178

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKG--LAAAADGNAKIL------GDAQK 183
               G+  +A  +F   +  G+ P+A  Y +L+ G  L    +   ++       G    
Sbjct: 179 LCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPN 238

Query: 184 YLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
            + EM+ KG++P+   Y  + +    A +   A+    +M   G
Sbjct: 239 VVGEMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESG 282


>gi|298204849|emb|CBI34156.3| unnamed protein product [Vitis vinifera]
          Length = 442

 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 84/189 (44%), Gaps = 33/189 (17%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
            +F KM  EG   N V    + + L K G T  A++L   ++     PDVV +T++I++ 
Sbjct: 136 HLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSL 195

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADG-----------NAKILGD- 180
               Q  EA  +F +M+  G++P+ +TY  L+  L    +            N+KIL D 
Sbjct: 196 CKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDV 255

Query: 181 ------------------AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
                             A + +  M+ +G+ P+  TYT + +      ++DEA  +   
Sbjct: 256 VIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDM 315

Query: 223 MKAKGFVPD 231
           M  KGF PD
Sbjct: 316 MVRKGFAPD 324



 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 67/144 (46%), Gaps = 8/144 (5%)

Query: 88  NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMR 147
           N  +  F  L++ G    A  + A+I   GH PD    T +I      G+  EAL +F +
Sbjct: 84  NILINSFCHLNRVGF---AFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDK 140

Query: 148 MLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAF 207
           M+  G  PN  TY  LI GL    + +A I     + L  M     +P+   YT++ ++ 
Sbjct: 141 MIDEGFQPNVVTYGTLINGLCKVGNTSAAI-----RLLRSMEQGNCQPDVVIYTSIIDSL 195

Query: 208 VRAQKVDEARGLLQQMKAKGFVPD 231
            + ++V EA  L  QM  +G  PD
Sbjct: 196 CKDRQVTEAFNLFSQMVGQGISPD 219



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 29/174 (16%)

Query: 95  DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           DAL K+G   EA ++   +  +G  PDVV +T +++ +    +  EA++VF  M+  G A
Sbjct: 263 DALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFA 322

Query: 155 PNAYTYAVLIK-------GLAA-------------AADGNA---------KILGDAQKYL 185
           P+  +Y  LI        GL +             A  G A         K+    +  L
Sbjct: 323 PDVISYTTLINAGKKDGGGLVSLQEVIGLVKETPDAVKGGAVEVIRKDKMKLFEKGRTLL 382

Query: 186 MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
            EMV   + PN   ++ V +A  +  KV EA  ++  M  +G  P+   V + +
Sbjct: 383 NEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNAVKVFDTM 436



 Score = 44.3 bits (103), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 5/127 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +AL  F ++      P +V    ++ + A        L +  +M + GV PN YT  +LI
Sbjct: 28  DALSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILI 87

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
                    +   +G A   L +++  G +P+  T+T +        K+ EA  L  +M 
Sbjct: 88  NSFC-----HLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMI 142

Query: 225 AKGFVPD 231
            +GF P+
Sbjct: 143 DEGFQPN 149


>gi|147787958|emb|CAN73849.1| hypothetical protein VITISV_021776 [Vitis vinifera]
          Length = 671

 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 82/186 (44%), Gaps = 16/186 (8%)

Query: 54  PPPYDPFKKVVDE--EPTDPRNLQEIFHKMRTEGLTNNA------VKMFDALSKDGLTHE 105
           PP    F K++    +      L  + H+M + G+  N       +  F  L++ G    
Sbjct: 58  PPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILINSFCHLNRVGF--- 114

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A  + A+I   GH PD    T +I      G+  EAL +F +M+  G  P+  TY  LI 
Sbjct: 115 AFSVLAKILKLGHQPDTATFTTLIRGICVEGKIGEALHLFDKMIGEGFRPDVVTYGTLIN 174

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           GL    + +A I     + L  MV K  +PN   Y  + ++  + ++V EA  L  +M  
Sbjct: 175 GLCKVGNTSAAI-----RLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVT 229

Query: 226 KGFVPD 231
           KG  PD
Sbjct: 230 KGISPD 235



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 71/151 (47%), Gaps = 14/151 (9%)

Query: 95  DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           DAL K+G   EA  +  ++  +G  P+VV +TA+++ +    +  EA++VF  M+  G  
Sbjct: 279 DALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCM 338

Query: 155 PNAYTYAVLIKGLAAAADGNAKI--------------LGDAQKYLMEMVGKGMRPNAGTY 200
           PN  +Y  LI G       +  I              + +A K    MV KG  PN  +Y
Sbjct: 339 PNVISYNTLINGYCKIQRIDKAIHYTXLMDXXCCYLNMDEAVKVFDTMVCKGCMPNVISY 398

Query: 201 TAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             +   + + Q++D+A  L  +M  +  +PD
Sbjct: 399 NTLINGYCKIQRIDKAMYLFGEMCRQELIPD 429



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 82/189 (43%), Gaps = 33/189 (17%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
            +F KM  EG   + V    + + L K G T  A++L   +  K   P+V A+  +I++ 
Sbjct: 152 HLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSL 211

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADG-----------NAKILGD- 180
               Q  EA  +F  M+  G++P+ +TY  LI  L    +            ++KI+ D 
Sbjct: 212 CKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDV 271

Query: 181 ------------------AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
                             A   + +M+ +G+ PN  TYTA+ +      ++DEA  +   
Sbjct: 272 VSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDT 331

Query: 223 MKAKGFVPD 231
           M  KG +P+
Sbjct: 332 MVCKGCMPN 340



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +FH+M       N V    + D L K+    EA+ L   I+     PD+  +   I+   
Sbjct: 452 LFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMC 511

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG+ + A  +F  + + G+ P+ +TY+++I GL         +L +A K   EM   G 
Sbjct: 512 RAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRG-----LLDEASKLFREMDENGC 566

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             N   Y  +   F+R  +   A  LLQ+M A+GF  D
Sbjct: 567 TLNGCIYNTITRGFLRNNETSRAIQLLQEMVARGFSAD 604



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 62/127 (48%), Gaps = 5/127 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA+++F  +  KG MP+V+++  +I  Y    +  +A+ +F  M    + P+  TY+ LI
Sbjct: 378 EAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLI 437

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            GL      + + L DA     EMV     PN  TY  + +   + + + EA  LL+ ++
Sbjct: 438 HGLC-----HVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIE 492

Query: 225 AKGFVPD 231
                PD
Sbjct: 493 GSNLDPD 499


>gi|410109889|gb|AFV61024.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           camara]
          Length = 431

 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 113/239 (47%), Gaps = 19/239 (7%)

Query: 2   AATAILRWLLHSPSPKRS-LRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPF 60
           +A+A+   +L +   +RS + + +  + A L+      + +  +  +  + KL  P+D  
Sbjct: 53  SASAVFAAVLETKGNQRSDIYVFSGLITAYLESGFLRDAIECYR--LTREHKLWVPFDTC 110

Query: 61  KKVVDEEPTDPRNLQEI--FHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIK 114
           +KV+ E     +  + +  F++   E     ++  F+ L     KDG    A  +F  I 
Sbjct: 111 RKVL-EHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAIT 169

Query: 115 DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA--AAAD 172
             G  P VV++  ++  Y   G   E  R+   MLASGV P+ YTY+VLI GL   +  D
Sbjct: 170 KWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMD 229

Query: 173 GNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G       A     EM+ KG+ PN  T+T + +   +  +VD A  + +QM ++  +PD
Sbjct: 230 G-------ANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPD 281



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 81/187 (43%), Gaps = 33/187 (17%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M  +GL  N V    + D   K+G    A++++ Q+  +  +PD++ +  +I    
Sbjct: 234 LFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLC 293

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN------------------- 174
             G  K+A  +   M   G+ P+ +TY  LI G     D +                   
Sbjct: 294 KKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDV 353

Query: 175 ---AKILG--------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
              A I G        DA+K L EM+  G++P+ GTYT +   F +   V +   LL++M
Sbjct: 354 AYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIVNEFCKKGDVWKGSKLLKEM 413

Query: 224 KAKGFVP 230
           +  G  P
Sbjct: 414 QRDGHAP 420


>gi|15221377|ref|NP_177613.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207514|sp|Q9SSF9.1|PP123_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74750
 gi|5882748|gb|AAD55301.1|AC008263_32 Contains 2 PF|01535 DUF domains [Arabidopsis thaliana]
 gi|332197508|gb|AEE35629.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 855

 Score = 81.6 bits (200), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 84/162 (51%), Gaps = 8/162 (4%)

Query: 74  LQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           + ++  +M  +G   N V   ++  +  +     EA+ +F Q+++ G  PD V +  +I+
Sbjct: 378 INKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLKEAMNVFNQMQEAGCEPDRVTYCTLID 437

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
            +A AG    A+ ++ RM  +G++P+ +TY+V+I  L     G A  L  A +   EMVG
Sbjct: 438 IHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCL-----GKAGHLPAAHRLFCEMVG 492

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           +G  PN  T+  +     +A+  + A  L + M+  GF PD+
Sbjct: 493 QGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDK 534



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 74/159 (46%), Gaps = 8/159 (5%)

Query: 75  QEIFHKMRTEGLTNNAV--KMFDALSKDGLTHE-ALQLFAQIKDKGHMPDVVAHTAVIEA 131
             +F +M  +G T N V   +  AL      +E AL+L+  +++ G  PD V ++ V+E 
Sbjct: 484 HRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEV 543

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G  +EA  VF  M      P+   Y +L+     A +     +  A ++   M+  
Sbjct: 544 LGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGN-----VDKAWQWYQAMLQA 598

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           G+RPN  T  ++   F+R  ++ EA  LLQ M A G  P
Sbjct: 599 GLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHP 637



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 6/90 (6%)

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           G   + +TY  ++  L     G AK  G+  K L EMV  G +PN  TY  +  ++ RA 
Sbjct: 354 GFKHDGHTYTTMVGNL-----GRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRAN 408

Query: 212 KVDEARGLLQQMKAKGFVPDEKAVKEALID 241
            + EA  +  QM+  G  PD +     LID
Sbjct: 409 YLKEAMNVFNQMQEAGCEPD-RVTYCTLID 437



 Score = 46.2 bits (108), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 53/127 (41%), Gaps = 6/127 (4%)

Query: 106 ALQLFAQIKDK-GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           AL  F  +K + G   D   +T ++     A Q  E  ++   M+  G  PN  TY  LI
Sbjct: 342 ALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLI 401

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
                   G A  L +A     +M   G  P+  TY  + +   +A  +D A  + Q+M+
Sbjct: 402 HSY-----GRANYLKEAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQ 456

Query: 225 AKGFVPD 231
             G  PD
Sbjct: 457 EAGLSPD 463


>gi|449455399|ref|XP_004145440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Cucumis sativus]
          Length = 576

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 82/160 (51%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           Q IF +MRT+    N      + +AL+++GL  +A ++F Q+++ G+ PDV A+ A++E+
Sbjct: 280 QNIFDEMRTQRCKPNICTFTALVNALAREGLCEKAEEIFEQMQEAGYEPDVYAYNALMES 339

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y+ AG    A  +F  M   G  P+  +Y +++      A G A +  DAQ    EM   
Sbjct: 340 YSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVD-----AYGRAGLHEDAQAVFEEMKRI 394

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G+ P   ++  +  A+  A  V +   ++ QM   G  PD
Sbjct: 395 GITPTMKSHMLLLSAYSSAGNVAKCEDIIGQMHKSGLKPD 434



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 84/164 (51%), Gaps = 12/164 (7%)

Query: 76  EIFHKMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           EIFH+M+ +G    T+    + +   K+  +H A  +F +++ +   P++   TA++ A 
Sbjct: 246 EIFHRMKRDGCQPTTDTYTMLINVYGKESKSHMAQNIFDEMRTQRCKPNICTFTALVNAL 305

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA--DGNAKILGDAQKYLMEMVG 190
           A  G  ++A  +F +M  +G  P+ Y Y  L++  + A    G A+I       LM+ + 
Sbjct: 306 AREGLCEKAEEIFEQMQEAGYEPDVYAYNALMESYSRAGFPYGAAEIFS-----LMQHM- 359

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
            G  P+  +Y  + +A+ RA   ++A+ + ++MK  G  P  K+
Sbjct: 360 -GCEPDRASYNIMVDAYGRAGLHEDAQAVFEEMKRIGITPTMKS 402



 Score = 70.1 bits (170), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 68/155 (43%), Gaps = 5/155 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +  A  K GL  +A  +FA+++  G  P  + + A I+     G   +A+ +F RM   G
Sbjct: 196 LLKAYCKSGLLEKAEAVFAEMRKYGLSPSAIVYNAYIDGLVKGGNNVKAVEIFHRMKRDG 255

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P   TY +LI      +  +      AQ    EM  +  +PN  T+TA+  A  R   
Sbjct: 256 CQPTTDTYTMLINVYGKESKSHM-----AQNIFDEMRTQRCKPNICTFTALVNALAREGL 310

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGF 247
            ++A  + +QM+  G+ PD  A    +      GF
Sbjct: 311 CEKAEEIFEQMQEAGYEPDVYAYNALMESYSRAGF 345



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 67/164 (40%), Gaps = 8/164 (4%)

Query: 71  PRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P    EIF  M+  G   +      M DA  + GL  +A  +F ++K  G  P + +H  
Sbjct: 346 PYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEEMKRIGITPTMKSHML 405

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           ++ AY+SAG   +   +  +M  SG+ P+ +    ++        G     G  +     
Sbjct: 406 LLSAYSSAGNVAKCEDIIGQMHKSGLKPDTFVMNSMLN-----LYGRLGQFGKMEDLFST 460

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           M     R +  TY  +   + RA  V+    L Q + AK   PD
Sbjct: 461 MQKGPCRADISTYNILINVYGRAGFVERMEELFQLLPAKNLEPD 504



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 5/111 (4%)

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
           PDV+ +  +++AY      K+    ++ +L S   P   TYA+L+K    +      +L 
Sbjct: 153 PDVIVYNLLMDAYGQRSLYKDVESTYLELLESHCIPTEDTYALLLKAYCKSG-----LLE 207

Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
            A+    EM   G+ P+A  Y A  +  V+     +A  +  +MK  G  P
Sbjct: 208 KAEAVFAEMRKYGLSPSAIVYNAYIDGLVKGGNNVKAVEIFHRMKRDGCQP 258


>gi|302822936|ref|XP_002993123.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
 gi|300139014|gb|EFJ05763.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
          Length = 569

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 80/161 (49%), Gaps = 12/161 (7%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLF-AQIKDKGHMPDVVAHTAVIE 130
           +E+  +M   G+  NA+    + D L K     EA+ L   ++  +G  PD+V ++ VI+
Sbjct: 204 RELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALLLGEVTRRGFTPDIVTYSTVID 263

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
               AG+ ++A+ +F  M     AP A TY  LI G   A D     + +A + L +MV 
Sbjct: 264 GLCKAGRLRDAVDIFEEM---SCAPTAITYNSLIGGYCRAGD-----MDEAIRLLGKMVD 315

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
               P+  TYT +  AF +  ++D+A  L QQM A    PD
Sbjct: 316 DNCAPDVITYTTLMSAFCKMGRLDDAYELFQQMVANKLSPD 356



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 82/160 (51%), Gaps = 5/160 (3%)

Query: 72  RNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           R+  +IF +M           +     + G   EA++L  ++ D    PDV+ +T ++ A
Sbjct: 272 RDAVDIFEEMSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSA 331

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +   G+  +A  +F +M+A+ ++P+  T+  L+ GL     G  + + DA + L E+  +
Sbjct: 332 FCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLC----GEGR-MEDALELLEEITRR 386

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G  P   TY  V + + ++ +V +A  L+   +++GFVP+
Sbjct: 387 GCPPTIYTYNCVVDGYCKSNQVRKAEELVADFRSRGFVPN 426



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 77/167 (46%), Gaps = 9/167 (5%)

Query: 77  IFHKMRTEGLTNNAV--KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           +F KM   G  N+     +   L K  L  EA+ L   +K +G  P  + H  VI     
Sbjct: 68  LFDKMAELGAVNHTTYYNLIHPLCKARLLDEAMGLLLDMKSRGMNPGTLLHNVVIGGLCR 127

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
           AG+ + AL V+ R +     P+  TY  L+ GL+ A       L DA + L EMV     
Sbjct: 128 AGRLRHALGVY-RQMNDAHPPDFLTYTKLVHGLSKAGR-----LRDAVQVLQEMVSARHV 181

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           P+  T T V ++     +VD+AR L+++M  +G   +      AL+D
Sbjct: 182 PDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAAN-AITYSALVD 227



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 74/160 (46%), Gaps = 10/160 (6%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F +M    L+ + V    + D L  +G   +AL+L  +I  +G  P +  +  V++ Y
Sbjct: 343 ELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGY 402

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             + Q ++A  +     + G  PN  TY +L+ G   A   +      A +YL ++  +G
Sbjct: 403 CKSNQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTD-----QALQYLDQLNSEG 457

Query: 193 --MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
                +   Y  + +A  R  + D+A    ++M  +G+VP
Sbjct: 458 GPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVP 497



 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 67/135 (49%), Gaps = 6/135 (4%)

Query: 92  KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
           K+   LSK G   +A+Q+  ++    H+PD    T V+++     +  +A  +   ML  
Sbjct: 154 KLVHGLSKAGRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHR 213

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM-EMVGKGMRPNAGTYTAVFEAFVRA 210
           G+A NA TY+ L+ GL        + L +A   L+ E+  +G  P+  TY+ V +   +A
Sbjct: 214 GMAANAITYSALVDGLC-----KCERLDEAVALLLGEVTRRGFTPDIVTYSTVIDGLCKA 268

Query: 211 QKVDEARGLLQQMKA 225
            ++ +A  + ++M  
Sbjct: 269 GRLRDAVDIFEEMSC 283



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 55/123 (44%), Gaps = 6/123 (4%)

Query: 102 LTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYA 161
           L H    L  +I+D+G  PD V    ++     A     A+ +F +M   G A N  TY 
Sbjct: 26  LRHLGPLLLDEIRDRGLSPDPVELNTILAELCDARDTTTAMALFDKMAELG-AVNHTTYY 84

Query: 162 VLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221
            LI  L       A++L +A   L++M  +GM P    +  V     RA ++  A G+ +
Sbjct: 85  NLIHPLC-----KARLLDEAMGLLLDMKSRGMNPGTLLHNVVIGGLCRAGRLRHALGVYR 139

Query: 222 QMK 224
           QM 
Sbjct: 140 QMN 142



 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 29/132 (21%), Positives = 50/132 (37%), Gaps = 40/132 (30%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DAL +DG T +A+Q + ++  +G++P       V+ A   A Q ++A           
Sbjct: 470 ILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQA----------- 518

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
                                         + L EM+  G  P  GT  AV  A+ RA  
Sbjct: 519 -----------------------------HELLEEMIKYGHTPGPGTCDAVVSAYCRAGM 549

Query: 213 VDEARGLLQQMK 224
           + +A  L  +++
Sbjct: 550 IQKADELASELR 561


>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
 gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 78/157 (49%), Gaps = 8/157 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +  +M  +G+  + V    + D   K G    A +LF +++ +  +PD +A+TAVI  
Sbjct: 65  ERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICG 124

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G+  EA +VF +M + GV P+  TY  LI G   + +     +  A     +MV  
Sbjct: 125 LCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGE-----MEKAFSLHNQMVQS 179

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
           G+ PN  TYTA+ +   +  +VD A  LL +M  KG 
Sbjct: 180 GLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGL 216



 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 78/160 (48%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            E+ H+M  +GL  N      + + L K G   +A++L  +++  G  PD +  T +++A
Sbjct: 205 NELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDA 264

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y   G+  +A  +   ML  G+ P   T+ VL+ G   +      +L D ++ L  M+ K
Sbjct: 265 YCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSG-----MLEDGERLLAWMLEK 319

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G+ PN  TY ++ + +     +     + + M A+G +PD
Sbjct: 320 GIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPD 359



 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 63/119 (52%), Gaps = 5/119 (4%)

Query: 113 IKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172
           +K +G  PDVV+++ VI  Y   G+ ++ L++   M   G+ PN YTY  +I  L  +  
Sbjct: 1   MKFRGDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGK 60

Query: 173 GNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
                + DA++ L EM+ +G+ P+   YT + + F +   +  A  L  +M+ +  VPD
Sbjct: 61  -----VDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPD 114



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 76/157 (48%), Gaps = 8/157 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F+KM + G+  + V    + D   K G   +A  L  Q+   G  P+VV +TA+ +   
Sbjct: 137 VFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLC 196

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             GQ   A  +   M   G+  N  TY  L+ GL  +  GN +    A K + EM   GM
Sbjct: 197 KLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKS--GNIR---QAVKLMEEMEVAGM 251

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
            P+  T+T + +A+ +  ++ +A  LL++M  +G  P
Sbjct: 252 YPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQP 288



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 79/160 (49%), Gaps = 12/160 (7%)

Query: 77  IFHKMRTEGL-----TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +  +M+ +GL     T N++ +   L K G   +A ++  ++ ++G +PD V +T +I+ 
Sbjct: 32  LIQEMQMKGLKPNLYTYNSIILL--LCKSGKVDDAERVLREMINQGIVPDTVVYTTLIDG 89

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +   G  + A ++F  M    + P+   Y  +I GL          + +A K   +M  +
Sbjct: 90  FCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRCGK-----MMEADKVFNKMFSR 144

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G+ P+  TYT + + + ++ ++++A  L  QM   G  P+
Sbjct: 145 GVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPN 184



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 76/160 (47%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            E+  +M   GL    +    + +     G+  +  +L A + +KG MP+   + ++++ 
Sbjct: 275 HELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQ 334

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y      +    ++  M A GV P++ TY +LIKG   A +     + +A     EM  K
Sbjct: 335 YCIRNNMRCTTEIYKGMCARGVMPDSNTYNILIKGHCKARN-----MKEAWFLHKEMAEK 389

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G    A +Y ++ + F + +K+ EAR L ++M+ +G   D
Sbjct: 390 GFNLTASSYNSIIKGFFKKKKISEARELFEEMRREGMAAD 429


>gi|357149641|ref|XP_003575182.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 557

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 78/157 (49%), Gaps = 8/157 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+ H+++ +G T   +    + D L+K G T EAL+L  ++  KG  PD++ ++ +    
Sbjct: 387 ELLHQLKDKGCTPVLISYNTVIDGLTKAGKTKEALELLNEMVTKGLQPDIITYSTISSGL 446

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               + +EA+R F ++   G+ PN   Y  ++ GL    + +     +A    + M+  G
Sbjct: 447 CREDRIEEAIRAFCKVQDMGIRPNTVLYNAILLGLCKRRETH-----NAIDLFIYMISNG 501

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFV 229
             PN  TYT + E       V EAR LL ++ ++G V
Sbjct: 502 CMPNESTYTILIEGLTYEGLVKEARELLGELCSRGVV 538



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 69/139 (49%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L   G T  AL +   +  +G +PDVV +T ++EA       K+A+++   M A G
Sbjct: 162 LIRGLCGRGRTGNALVVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRAKG 221

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            AP+  TY V++ G+          + DA ++L  +   G  PN  +Y  V +    A++
Sbjct: 222 CAPDIITYNVVVNGICQEGR-----VDDAIEFLKSLPSHGCEPNTVSYNIVLKGLCTAER 276

Query: 213 VDEARGLLQQMKAKGFVPD 231
            ++A  L+ +M  KG+ P+
Sbjct: 277 WEDAEKLMAEMSQKGYPPN 295



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 70/140 (50%), Gaps = 15/140 (10%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L   G T EA ++ A  +     PDV+A+ A++  Y   GQ   A R+   M    
Sbjct: 100 LIKKLCASGRTAEARRVLAACE-----PDVMAYNAMVAGYCVTGQLDAARRLVADM---P 151

Query: 153 VAPNAYTYAVLIKGLAA-AADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           + P++YTY  LI+GL      GNA ++ D      +M+ +G  P+  TYT + EA  +  
Sbjct: 152 MEPDSYTYNTLIRGLCGRGRTGNALVVLD------DMLRRGCVPDVVTYTILLEATCKRS 205

Query: 212 KVDEARGLLQQMKAKGFVPD 231
              +A  LL +M+AKG  PD
Sbjct: 206 GYKQAMKLLDEMRAKGCAPD 225



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/195 (22%), Positives = 83/195 (42%), Gaps = 26/195 (13%)

Query: 58  DPFKKVVDEEPTDPRNL--QEIFHKMRTEGLTNNAVKMFDALSKDGLT------------ 103
           D  +++V + P +P +     +   +   G T NA+ + D + + G              
Sbjct: 141 DAARRLVADMPMEPDSYTYNTLIRGLCGRGRTGNALVVLDDMLRRGCVPDVVTYTILLEA 200

Query: 104 -------HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
                   +A++L  +++ KG  PD++ +  V+      G+  +A+     + + G  PN
Sbjct: 201 TCKRSGYKQAMKLLDEMRAKGCAPDIITYNVVVNGICQEGRVDDAIEFLKSLPSHGCEPN 260

Query: 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
             +Y +++KGL  A         DA+K + EM  KG  PN  T+  +     R   V+ A
Sbjct: 261 TVSYNIVLKGLCTAERWE-----DAEKLMAEMSQKGYPPNVVTFNMLISFLCRRGLVEPA 315

Query: 217 RGLLQQMKAKGFVPD 231
             +L Q+   G  P+
Sbjct: 316 MEVLDQIPKYGCTPN 330



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 70/159 (44%), Gaps = 10/159 (6%)

Query: 76  EIFHKMRTEGLTNNAVKMFDALSKDGLTHE----ALQLFAQIKDKGHMPDVVAHTAVIEA 131
           E    + + G   N V  ++ + K   T E    A +L A++  KG+ P+VV    +I  
Sbjct: 247 EFLKSLPSHGCEPNTVS-YNIVLKGLCTAERWEDAEKLMAEMSQKGYPPNVVTFNMLISF 305

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G  + A+ V  ++   G  PN+ +Y  ++           K +  A  ++  MV +
Sbjct: 306 LCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFC-----KQKKMDRAMAFVELMVSR 360

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           G  P+  +Y  +  A  R  +VD A  LL Q+K KG  P
Sbjct: 361 GCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTP 399


>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
 gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 89/188 (47%), Gaps = 33/188 (17%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F KM   G   N V    + D+L KD L +EAL +F+ +K K   PD+  + ++I+   
Sbjct: 222 LFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLC 281

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLI-----KGLAAAADGNAKILG--------- 179
           +  + KEA  +   M +  + PN +T+ VL+     +G  + A G  K +          
Sbjct: 282 NFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVV 341

Query: 180 ----------------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
                           +A+K    M+ KG +P+A +Y  + + + +A+++DEA+ L  +M
Sbjct: 342 TYSSLMYGYSLRMEIVEARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEM 401

Query: 224 KAKGFVPD 231
             +G  PD
Sbjct: 402 IHQGLTPD 409



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 76/139 (54%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DA+ K+G   EA  +F  + + G  PDVV +++++  Y+   +  EA ++F  M+  G
Sbjct: 311 LVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKG 370

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+A++Y +LIKG        AK + +A++   EM+ +G+ P+   Y  +     +  +
Sbjct: 371 CKPDAFSYNILIKGYC-----KAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGR 425

Query: 213 VDEARGLLQQMKAKGFVPD 231
           + EA+ L + M + G +PD
Sbjct: 426 LREAQDLFKNMHSNGNLPD 444



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 80/161 (49%), Gaps = 8/161 (4%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +++F++M  +GLT + V    +   L + G   EA  LF  +   G++PD+  ++ +++ 
Sbjct: 395 KQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDG 454

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +   G   +A R+F  M ++ + P+   Y +LI  +     GN K   DA+K   E+  +
Sbjct: 455 FCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAMCKF--GNLK---DARKLFSELFVQ 509

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           G+ PN   YT +     +   +DEA    + M+  G  PDE
Sbjct: 510 GLLPNVQIYTTIINNLCKEGLLDEALEAFRNMEGDGCPPDE 550



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 70/139 (50%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K G T  A  LF ++++ G  P+VV +  +I++        EAL +F  M A  
Sbjct: 206 IINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEALDIFSYMKAKR 265

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           ++P+ +TY  LI+GL      N +   +A   L EM    + PN  T+  + +A  +  K
Sbjct: 266 ISPDIFTYNSLIQGLC-----NFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAICKEGK 320

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V EA+G+ + M   G  PD
Sbjct: 321 VSEAQGVFKTMTEMGVEPD 339



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/187 (24%), Positives = 84/187 (44%), Gaps = 16/187 (8%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +++F  M T+G   +A     +     K     EA QLF ++  +G  PD V +  +I  
Sbjct: 360 RKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHG 419

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G+ +EA  +F  M ++G  P+ +TY++L+ G           LG A +    M   
Sbjct: 420 LCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEG-----YLGKAFRLFRVMQST 474

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD--------EKAVKEALIDKR 243
            ++P+   Y  + +A  +   + +AR L  ++  +G +P+            KE L+D+ 
Sbjct: 475 YLKPDIAMYNILIDAMCKFGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEA 534

Query: 244 GQGFRGV 250
            + FR +
Sbjct: 535 LEAFRNM 541



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 73/163 (44%), Gaps = 8/163 (4%)

Query: 72  RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R  Q++F  M + G   +      + D   K+G   +A +LF  ++     PD+  +  +
Sbjct: 427 REAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNIL 486

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I+A    G  K+A ++F  +   G+ PN   Y  +I  L         +L +A +    M
Sbjct: 487 IDAMCKFGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEG-----LLDEALEAFRNM 541

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            G G  P+  +Y  +   F++ +    A  L+ +M+ +GFV +
Sbjct: 542 EGDGCPPDEFSYNVIIRGFLQYKDESRAAQLIGEMRDRGFVAE 584



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F KM   GL  +AV    + + L K G   +A++ F   +  G  P V  +T +I    
Sbjct: 152 VFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDFEASGCQPTVYTYTTIINGLC 211

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G+   A  +F +M  +G  PN  TY +LI  L        K++ +A      M  K +
Sbjct: 212 KIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLC-----KDKLVNEALDIFSYMKAKRI 266

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            P+  TY ++ +     ++  EA  LL +M +   +P+
Sbjct: 267 SPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPN 304



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 59/139 (42%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  S       A  +F+++   G  PD V    +I      G+  +A+  F    ASG
Sbjct: 136 LIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDFEASG 195

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P  YTY  +I GL    +  A     A     +M   G +PN  TY  + ++  + + 
Sbjct: 196 CQPTVYTYTTIINGLCKIGETTA-----AAGLFKKMEEAGCQPNVVTYNILIDSLCKDKL 250

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V+EA  +   MKAK   PD
Sbjct: 251 VNEALDIFSYMKAKRISPD 269



 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 6/141 (4%)

Query: 92  KMFDALSKDGLTHEA-LQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           K+  A+ K G  + A + L  Q++  G  PD+   + +I+ ++   +   A  VF +M+ 
Sbjct: 99  KLLSAIVKMGQYYGAVISLSKQMELAGLSPDIYTLSILIDCFSHLQRVDLAFSVFSKMIK 158

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
            G+ P+A T+  LI GL             A ++  +    G +P   TYT +     + 
Sbjct: 159 LGLQPDAVTFNTLINGLCKVGK-----FAQAVEFFDDFEASGCQPTVYTYTTIINGLCKI 213

Query: 211 QKVDEARGLLQQMKAKGFVPD 231
            +   A GL ++M+  G  P+
Sbjct: 214 GETTAAAGLFKKMEEAGCQPN 234



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 9/111 (8%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DA+ K G   +A +LF+++  +G +P+V  +T +I      G   EAL  F  M   G
Sbjct: 486 LIDAMCKFGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALEAFRNMEGDG 545

Query: 153 VAPNAYTYAVLIKGLAAAADGN--AKILGDAQKYLMEMVGKGMRPNAGTYT 201
             P+ ++Y V+I+G     D +  A+++G       EM  +G    AGT T
Sbjct: 546 CPPDEFSYNVIIRGFLQYKDESRAAQLIG-------EMRDRGFVAEAGTTT 589


>gi|334183626|ref|NP_176639.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242336|sp|Q0WKZ3.1|PP105_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64580
 gi|110741328|dbj|BAF02214.1| hypothetical protein [Arabidopsis thaliana]
 gi|332196134|gb|AEE34255.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 523

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 8/165 (4%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D  N  E+F+ M  +G+  +AV    +   LS  G   +A +L   +  +   P+V+  T
Sbjct: 199 DLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFT 258

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
           A+I+ +   G   EA  ++  M+   V PN +TY  LI G           LGDA+    
Sbjct: 259 ALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHG-----CLGDAKYMFD 313

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            MV KG  P+  TY  +   F ++++V++   L  +M  +G V D
Sbjct: 314 LMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGD 358



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 63/127 (49%), Gaps = 5/127 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA+ L   +   G +P+VV +  VI           AL VF  M   G+  +A TY  LI
Sbjct: 167 EAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLI 226

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            GL+     N+    DA + L +MV + + PN   +TA+ + FV+   + EAR L ++M 
Sbjct: 227 SGLS-----NSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMI 281

Query: 225 AKGFVPD 231
            +  VP+
Sbjct: 282 RRSVVPN 288



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 82/202 (40%), Gaps = 41/202 (20%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F  M ++G   + V    +     K     + ++LF ++  +G + D   +  +I  Y 
Sbjct: 311 MFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYC 370

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKI------LGDAQKYLME 187
            AG+   A +VF RM+  GV+P+  TY +L+  L      N KI      + D QK  M+
Sbjct: 371 QAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLC----NNGKIEKALVMVEDLQKSEMD 426

Query: 188 ----------------------------MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGL 219
                                       +  KG++P+A  Y  +     R     EA  L
Sbjct: 427 VDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKL 486

Query: 220 LQQMKAKGFVPDEKAVKEALID 241
            ++MK  GF+P E+   E L D
Sbjct: 487 CRRMKEDGFMPSERIYDETLRD 508



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 62/132 (46%), Gaps = 5/132 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +     G   +A  +F  +  KG  PDVV +  +I  +  + + ++ +++F  M   G
Sbjct: 295 LINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQG 354

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +  +A+TY  LI G   A   N      AQK    MV  G+ P+  TY  + +      K
Sbjct: 355 LVGDAFTYNTLIHGYCQAGKLNV-----AQKVFNRMVDCGVSPDIVTYNILLDCLCNNGK 409

Query: 213 VDEARGLLQQMK 224
           +++A  +++ ++
Sbjct: 410 IEKALVMVEDLQ 421



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/127 (21%), Positives = 56/127 (44%), Gaps = 5/127 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +A  LF ++     +P +V  T V+   A   +    + ++ +M   G++ + Y++ +LI
Sbjct: 62  DAFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILI 121

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
                 +  +  +    +     M+  G RP+  T  ++   F +  +  EA  L+  M 
Sbjct: 122 HCFCRCSRLSLALALLGK-----MMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMD 176

Query: 225 AKGFVPD 231
             GFVP+
Sbjct: 177 GFGFVPN 183


>gi|449455469|ref|XP_004145475.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Cucumis sativus]
          Length = 728

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 82/177 (46%), Gaps = 13/177 (7%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
            FHK+   GL+ N +    M   L K G   +A +L  ++   G  P+V  HT++I    
Sbjct: 301 FFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLC 360

Query: 134 SAGQGKEALRVFMRMLAS-GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             G  + A R+F++++ S    PN +TY  +I G           L  A+     M  +G
Sbjct: 361 KKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEK-----LSRAEMLFERMKEQG 415

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID---KRGQG 246
           + PN  TYT + +   +A    +A  L++ M  +GF P+      +++D   KRG+ 
Sbjct: 416 LVPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPN-TCTYNSIVDGLCKRGRA 471



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 68/146 (46%), Gaps = 5/146 (3%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
           A  +  L + A+  F ++   G  P+++ ++++I      G  K+A  +   M+ +G  P
Sbjct: 288 AFCEKSLVNRAVWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKP 347

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           N YT+  LI GL              + +L  +     +PN  TYTA+   + + +K+  
Sbjct: 348 NVYTHTSLIHGLCKKGWTERAF----RLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSR 403

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++MK +G VP+       LID
Sbjct: 404 AEMLFERMKEQGLVPNTNTYT-TLID 428



 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/217 (20%), Positives = 88/217 (40%), Gaps = 41/217 (18%)

Query: 77  IFHKMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M+ +GL   TN    + D   K G   +A +L   + ++G  P+   + ++++   
Sbjct: 407 LFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLC 466

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN------------------- 174
             G+ +EA ++      + +  +  TY +LI      AD N                   
Sbjct: 467 KRGRAEEAFKLLNTGFQNQIEADGVTYTILISEQCKRADMNQALVFLNKMFKVGFQPDIH 526

Query: 175 -----------AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
                        ++ D++K   E++  G+ P   TYT++   + R +KV  A    Q+M
Sbjct: 527 LYTTLIAAFCRQNMMKDSEKLFDEVIKLGLAPTKETYTSMICGYCREKKVSLAVKFFQKM 586

Query: 224 KAKGFVPDEKA--------VKEALIDKRGQGFRGVIN 252
              G  PD  +         KE+ +D+  Q +  +I+
Sbjct: 587 SDHGCAPDSISYGALISGLCKESRLDEARQLYDTMID 623



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 5/129 (3%)

Query: 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
           ++AL    ++   G  PD+  +T +I A+      K++ ++F  ++  G+AP   TY  +
Sbjct: 507 NQALVFLNKMFKVGFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEVIKLGLAPTKETYTSM 566

Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           I G         K +  A K+  +M   G  P++ +Y A+     +  ++DEAR L   M
Sbjct: 567 ICGYC-----REKKVSLAVKFFQKMSDHGCAPDSISYGALISGLCKESRLDEARQLYDTM 621

Query: 224 KAKGFVPDE 232
             KG  P E
Sbjct: 622 IDKGLSPCE 630


>gi|302799689|ref|XP_002981603.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
 gi|300150769|gb|EFJ17418.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
          Length = 609

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 75/140 (53%), Gaps = 7/140 (5%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   K G   +A+++   ++ +  +P+VV +++++     AG   +AL +F RM + G
Sbjct: 195 LIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKG 254

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM-EMVGKGMRPNAGTYTAVFEAFVRAQ 211
             PN  TY  LI GL AA     K+  DA + LM EM       +  +Y A+ + + R  
Sbjct: 255 CVPNVVTYTTLIHGLCAA----HKV--DAARLLMDEMTATCCPADTVSYNALLDGYCRLG 308

Query: 212 KVDEARGLLQQMKAKGFVPD 231
           +++EA+ L ++M AK  +PD
Sbjct: 309 RIEEAKQLFKEMAAKSCLPD 328



 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 79/163 (48%), Gaps = 11/163 (6%)

Query: 82  RTEGLTNNAVKMFDALSKDGLTHEALQLFAQIK---DKGHMPDVVAHTAVIEAYASAGQG 138
           R + ++++A  +   L ++    EA +LF +++   D    PDVV +TA+I+ +  +G  
Sbjct: 148 RLDAVSSSA--LITGLCRERRIGEAYELFQEMEMREDGAWKPDVVTYTALIDGFCKSGNL 205

Query: 139 KEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAG 198
           ++A+++   M      PN  TY+ L+ GL  A D     L  A      M  KG  PN  
Sbjct: 206 EKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGD-----LDQALDLFRRMTSKGCVPNVV 260

Query: 199 TYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           TYT +      A KVD AR L+ +M A    P +     AL+D
Sbjct: 261 TYTTLIHGLCAAHKVDAARLLMDEMTAT-CCPADTVSYNALLD 302



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 107/220 (48%), Gaps = 15/220 (6%)

Query: 21  RITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKKVVD--EEPTDPRNLQEIF 78
           R  N  VN   +  L+S + +  K+  + KS + P    +  V++   +  +     EI 
Sbjct: 10  RTYNVVVNGLCKARLTSKAYEVLKEMRDGKS-VAPDLVTYSTVINGFCKQGEMDRACEIL 68

Query: 79  HKMRT-EGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
            +M T +G+  + V    + D L +DG    A ++  ++K KG  PD    +A+I  + +
Sbjct: 69  REMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCN 128

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK--- 191
           A +  EAL+++  +L S    +A + + LI GL        + +G+A +   EM  +   
Sbjct: 129 ARKVDEALKLYKEILTSSCRLDAVSSSALITGLC-----RERRIGEAYELFQEMEMREDG 183

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             +P+  TYTA+ + F ++  +++A  +L  M+ +  VP+
Sbjct: 184 AWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPN 223



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/137 (33%), Positives = 61/137 (44%), Gaps = 26/137 (18%)

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN--AKI 177
           PDVV ++ V+  Y+ A +  EA      M+A  VAPNA TY+ LI GL  A   N   ++
Sbjct: 363 PDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVNHAMEV 422

Query: 178 LGDAQK------------------------YLMEMVGKGMRPNAGTYTAVFEAFVRAQKV 213
           L +  K                         L EMV K + P+ GT+ +V  A  R   +
Sbjct: 423 LKNVDKPDVVTYTIVIEGLCGTDRTEEALTLLEEMVNKRVEPSVGTFNSVIGALCRLGDM 482

Query: 214 DEARGLLQQMKAKGFVP 230
           DEA  LL  M A G  P
Sbjct: 483 DEAWKLLVAMAAHGLEP 499



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 78/170 (45%), Gaps = 10/170 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F +M ++G   N V    +   L        A  L  ++       D V++ A+++ Y
Sbjct: 245 DLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNALLDGY 304

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM-VGK 191
              G+ +EA ++F  M A    P+  TY  L++G       NA  L +A+  L  M    
Sbjct: 305 CRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFC-----NASRLEEARFLLENMKTAA 359

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           G+ P+  TY+ V   + RA++  EA   +Q+M A+   P+      +LID
Sbjct: 360 GIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPN-AVTYSSLID 408



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 7/114 (6%)

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRML-ASGVAPNAYTYAVLIKGLAAAADGNAKIL 178
           P+   +  V+     A    +A  V   M     VAP+  TY+ +I G     +     +
Sbjct: 7   PNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGE-----M 61

Query: 179 GDAQKYLMEMVGK-GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             A + L EMV + GM P+  TYT+V +   R  K+D A  ++++MK KG  PD
Sbjct: 62  DRACEILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPD 115



 Score = 46.2 bits (108), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 69/148 (46%), Gaps = 12/148 (8%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L     T EAL L  ++ +K   P V    +VI A    G   EA ++ + M A G
Sbjct: 437 VIEGLCGTDRTEEALTLLEEMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHG 496

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAG-------TYTAVFE 205
           + P   TY  L++G +    G  +I   A +    M  K  + ++         ++A+  
Sbjct: 497 LEPGMVTYTTLLEGFSRT--GRMEI---AYELFEVMRRKAKKSSSAANLVPEQAFSALIR 551

Query: 206 AFVRAQKVDEARGLLQQMKAKGFVPDEK 233
              +A+++D+A  ++++++++   P E+
Sbjct: 552 GLCKAREIDKAMAVVEELRSRECEPAEE 579



 Score = 45.1 bits (105), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 7/81 (8%)

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV-GKGMRPNAGTYTAVFEAFVRAQ 211
           VAPN  TY V++ GL       A++   A + L EM  GK + P+  TY+ V   F +  
Sbjct: 5   VAPNERTYNVVVNGLC-----KARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQG 59

Query: 212 KVDEARGLLQQMKAK-GFVPD 231
           ++D A  +L++M  + G  PD
Sbjct: 60  EMDRACEILREMVTRDGMAPD 80


>gi|225451354|ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 744

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 84/189 (44%), Gaps = 33/189 (17%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
            +F KM  EG   N V    + + L K G T  A++L   ++     PDVV +T++I++ 
Sbjct: 147 HLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSL 206

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADG-----------NAKILGD- 180
               Q  EA  +F +M+  G++P+ +TY  L+  L    +            N+KIL D 
Sbjct: 207 CKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDV 266

Query: 181 ------------------AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
                             A + +  M+ +G+ P+  TYT + +      ++DEA  +   
Sbjct: 267 VIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDM 326

Query: 223 MKAKGFVPD 231
           M  KGF PD
Sbjct: 327 MVRKGFAPD 335



 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 77/158 (48%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +FH+M   G   + V    + D+L K+    EA+ L   I+     PD+  +  +I+   
Sbjct: 393 LFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNIIIDGMC 452

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG+ + A  +F  + + G+ P+ +TY ++I GL         +L +A K  MEM G   
Sbjct: 453 RAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRG-----LLNEANKLFMEMDGNDC 507

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            P+  TY  +   F++  +   A  LL++M A+GF  D
Sbjct: 508 SPDGCTYNTIARGFLQNNETLRAIQLLEEMLARGFSAD 545



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 67/144 (46%), Gaps = 8/144 (5%)

Query: 88  NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMR 147
           N  +  F  L++ G    A  + A+I   GH PD    T +I      G+  EAL +F +
Sbjct: 95  NILINSFCHLNRVGF---AFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDK 151

Query: 148 MLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAF 207
           M+  G  PN  TY  LI GL    + +A I     + L  M     +P+   YT++ ++ 
Sbjct: 152 MIDEGFQPNVVTYGTLINGLCKVGNTSAAI-----RLLRSMEQGNCQPDVVIYTSIIDSL 206

Query: 208 VRAQKVDEARGLLQQMKAKGFVPD 231
            + ++V EA  L  QM  +G  PD
Sbjct: 207 CKDRQVTEAFNLFSQMVGQGISPD 230



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 94/218 (43%), Gaps = 21/218 (9%)

Query: 21  RITNTRVNATLQRSLSSSSDQP-TKKYVNTKSKLPPPYDPFKKVVDEEPTDPRNLQEIFH 79
           ++ NT     L RS+   + QP    Y +    L           D + T+  NL   F 
Sbjct: 173 KVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCK---------DRQVTEAFNL---FS 220

Query: 80  KMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           +M  +G++ +      +  AL           L  Q+ +   +PDVV  + V++A    G
Sbjct: 221 QMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEG 280

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196
           +  EA  +   M+  GV P+  TY  L+ G    ++     + +A K    MV KG  P+
Sbjct: 281 KVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSE-----MDEAVKVFDMMVRKGFAPD 335

Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
             +YT +   + +  K+D+A  L ++M  K ++PD K 
Sbjct: 336 VISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKT 373



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 7/138 (5%)

Query: 95  DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           DAL K+G   EA ++   +  +G  PDVV +T +++ +    +  EA++VF  M+  G A
Sbjct: 274 DALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFA 333

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLM-EMVGKGMRPNAGTYTAVFEAFVRAQKV 213
           P+  +Y  LI G         KI  D   YL  EM  K   P+  TY  +        ++
Sbjct: 334 PDVISYTTLINGYCKI----HKI--DKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRL 387

Query: 214 DEARGLLQQMKAKGFVPD 231
            +A  L  +M A+G +PD
Sbjct: 388 QDAIALFHEMVARGQMPD 405



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/193 (22%), Positives = 83/193 (43%), Gaps = 29/193 (15%)

Query: 79  HKMRTEGLTNNAVKMFDALSKDGL-------------------THEALQLFAQIKDKGHM 119
           H +++E   + AVK+FD + + G                      +A+ LF ++  K  +
Sbjct: 311 HCLQSE--MDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWI 368

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
           PD   +  ++      G+ ++A+ +F  M+A G  P+  TY++L+  L          L 
Sbjct: 369 PDTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNCH-----LE 423

Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
           +A   L  +    + P+   Y  + +   RA +++ AR L   + +KG  P   +V    
Sbjct: 424 EAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHP---SVWTYN 480

Query: 240 IDKRGQGFRGVIN 252
           I   G   RG++N
Sbjct: 481 IMIHGLCKRGLLN 493



 Score = 44.3 bits (103), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 5/127 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +AL  F ++      P +V    ++ + A        L +  +M + GV PN YT  +LI
Sbjct: 39  DALSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILI 98

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
                    +   +G A   L +++  G +P+  T+T +        K+ EA  L  +M 
Sbjct: 99  NSFC-----HLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMI 153

Query: 225 AKGFVPD 231
            +GF P+
Sbjct: 154 DEGFQPN 160


>gi|410109955|gb|AFV61057.1| pentatricopeptide repeat-containing protein 11, partial [Phyla
           nodiflora]
          Length = 431

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 109/252 (43%), Gaps = 45/252 (17%)

Query: 2   AATAILRWLLHSPSPKRS-LRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPF 60
           +A+A+   +L +   +RS + + +  + A L+  L    D      +  + K   P+D  
Sbjct: 53  SASAVFAAILETKGTQRSDIYVFSGLITAYLE--LGFLRDAIDCYRLTREHKFCVPFDTC 110

Query: 61  KKVVD---------------EE------PTDPRNLQEIFHKMRTEGLTNNAVKMFDALSK 99
           +KV++               EE      P        + H+   EG    A  +FDA++K
Sbjct: 111 RKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKEGDIRVAQSVFDAITK 170

Query: 100 DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYT 159
            GL                 P VV++  ++  Y   G   E  R+   M ASGV P+ YT
Sbjct: 171 WGLR----------------PSVVSYNTLMNGYIRLGDLDEGFRLKSAMHASGVHPDVYT 214

Query: 160 YAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGL 219
           Y+VLI GL   +      + DA K   EM+ KG+ PN+ T+T + +   +   VD A  +
Sbjct: 215 YSVLINGLCKESK-----MDDANKLFDEMLEKGLVPNSVTFTTLIDGHCKNGWVDLAMEI 269

Query: 220 LQQMKAKGFVPD 231
            +QM ++  +PD
Sbjct: 270 YKQMLSQSLLPD 281



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 87/201 (43%), Gaps = 35/201 (17%)

Query: 63  VVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM 119
           +  E   D  N  ++F +M  +GL  N+V    + D   K+G    A++++ Q+  +  +
Sbjct: 222 LCKESKMDDAN--KLFDEMLEKGLVPNSVTFTTLIDGHCKNGWVDLAMEIYKQMLSQSLL 279

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN----- 174
           PD+V + A+I      G  K+A  +   M   G+ P+  TY  LI G     D +     
Sbjct: 280 PDLVTYNALIYGLCKKGDLKQAHDLIDEMSMXGLKPDKITYTTLIDGCCKEGDLDTAFEH 339

Query: 175 -----------------AKILG--------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
                            A I G        DA+K L EM+  G++P+  TYT +   F +
Sbjct: 340 RKMMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTRTYTMIINEFCK 399

Query: 210 AQKVDEARGLLQQMKAKGFVP 230
              V +   LL++M+  G VP
Sbjct: 400 KGDVWKGSKLLKEMQRDGHVP 420



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 62/124 (50%), Gaps = 5/124 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K+    +A +LF ++ +KG +P+ V  T +I+ +   G    A+ ++ +ML+  
Sbjct: 218 LINGLCKESKMDDANKLFDEMLEKGLVPNSVTFTTLIDGHCKNGWVDLAMEIYKQMLSQS 277

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+  TY  LI GL    D     L  A   + EM   G++P+  TYT + +   +   
Sbjct: 278 LLPDLVTYNALIYGLCKKGD-----LKQAHDLIDEMSMXGLKPDKITYTTLIDGCCKEGD 332

Query: 213 VDEA 216
           +D A
Sbjct: 333 LDTA 336


>gi|168033824|ref|XP_001769414.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162679334|gb|EDQ65783.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 410

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 82/159 (51%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +I  +M+      N +    M ++L + G   EA++LF ++K+ G  P+   + ++++AY
Sbjct: 157 QILKEMKAVNCLPNVISYTTMINSLGRSGRLDEAVELFEEMKELGRSPNSWTYNSLLKAY 216

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           A  G+ ++A+ +F+ M   G  P+ YTY  +I        G   +  +A+   +EM  KG
Sbjct: 217 AREGRYEKAMCLFVGMEDEGCIPDLYTYNTVID-----MCGRGGLFAEAEGVFLEMQRKG 271

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             P+  TY  + +A+ +  +   AR LL+ MK  G  PD
Sbjct: 272 CTPDRVTYNTMLDAYSKWSRRGRARDLLKTMKRAGCTPD 310



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 73/160 (45%), Gaps = 7/160 (4%)

Query: 72  RNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           R LQE    +  E   +N V +   L ++G    A ++F  +   G  P V A+TA++  
Sbjct: 18  RFLQE---HLEYELKEHNCVTIISILGREGKLGLAREIFEGMSKAGVAPSVHAYTALLSG 74

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           YA  G  KEA  +F  M   G +PN  TY  LI     A    A  L D      EM   
Sbjct: 75  YAKQGLLKEAWALFEAMKEKGCSPNVLTYNTLIN----ACTKRAYRLPDLVGLFEEMKQA 130

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G++PN  TY  +  A V     D A  +L++MKA   +P+
Sbjct: 131 GVQPNDITYNCMVNACVCLSLFDTASQILKEMKAVNCLPN 170



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 75/163 (46%), Gaps = 12/163 (7%)

Query: 77  IFHKMRTEGL-----TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +F  M  EG      T N V   D   + GL  EA  +F +++ KG  PD V +  +++A
Sbjct: 228 LFVGMEDEGCIPDLYTYNTV--IDMCGRGGLFAEAEGVFLEMQRKGCTPDRVTYNTMLDA 285

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y+   +   A  +   M  +G  P+ +TY +L+      A G A    +A +   E+   
Sbjct: 286 YSKWSRRGRARDLLKTMKRAGCTPDLWTYNILLD-----AAGKAGSASEAMQIFHELKAA 340

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
           G  PN  +++A+   + R    +EA     +M+A G VP+  A
Sbjct: 341 GHSPNLVSFSALINMYGRLGYFEEAERAWVEMRATGCVPNATA 383



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 43/72 (59%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DA  K G   EA+Q+F ++K  GH P++V+ +A+I  Y   G  +EA R ++ M A+G
Sbjct: 317 LLDAAGKAGSASEAMQIFHELKAAGHSPNLVSFSALINMYGRLGYFEEAERAWVEMRATG 376

Query: 153 VAPNAYTYAVLI 164
             PNA  Y  L+
Sbjct: 377 CVPNATAYCGLM 388



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 8/134 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M+ +G T + V    M DA SK      A  L   +K  G  PD+  +  +++A  
Sbjct: 263 VFLEMQRKGCTPDRVTYNTMLDAYSKWSRRGRARDLLKTMKRAGCTPDLWTYNILLDAAG 322

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG   EA+++F  + A+G +PN  +++ LI        G      +A++  +EM   G 
Sbjct: 323 KAGSASEAMQIFHELKAAGHSPNLVSFSALIN-----MYGRLGYFEEAERAWVEMRATGC 377

Query: 194 RPNAGTYTAVFEAF 207
            PNA  Y  +  ++
Sbjct: 378 VPNATAYCGLMNSY 391


>gi|32527604|gb|AAP86199.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 686

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 80/160 (50%), Gaps = 8/160 (5%)

Query: 72  RNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           R ++EI H ++   +  +A+   D L KDG   ++  LF +++DKG  P++V +  +I  
Sbjct: 241 RKMEEISH-IKPNVVIYSAI--IDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGG 297

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +  +G+   A R+   ML   ++PN  TY  LI           K    A+ Y  EM+ +
Sbjct: 298 FCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVK----EGKFFEAAELY-DEMLPR 352

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G+ PN  TY ++ + F +  ++D A  +   M  KG  PD
Sbjct: 353 GIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPD 392



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 78/161 (48%), Gaps = 8/161 (4%)

Query: 72  RNLQEIFH-KMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           R LQE+   K+    +T NA  + +A  K+G   EA +L+ ++  +G +P+ + + ++I+
Sbjct: 309 RLLQEMLERKISPNVVTYNA--LINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMID 366

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
            +    +   A  +F  M   G +P+ +T+  LI G   A     K + D  + L EM  
Sbjct: 367 GFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGA-----KRIDDGMELLHEMPR 421

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +G+  N  TY  +   F     ++ A  L QQM + G  PD
Sbjct: 422 RGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPD 462



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 78/170 (45%), Gaps = 19/170 (11%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+ H+M   GL  N V    +       G  + AL L  Q+   G  PD+V    +++  
Sbjct: 414 ELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGL 473

Query: 133 ASAGQGKEALRVFMRMLAS-----------GVAPNAYTYAVLIKGLAAAADGNAKILGDA 181
              G+ K+AL +F  M  S           GV P+  TY +LI GL        K L +A
Sbjct: 474 CDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLI----NEGKFL-EA 528

Query: 182 QKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           ++   EM  +G+ P+  TY+++ +   +  ++DEA  +   M +K F P+
Sbjct: 529 EELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPN 578



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 67/153 (43%), Gaps = 8/153 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E++ +M   G+  + +    M D L K     EA Q+F  +  K   P+VV    +I  
Sbjct: 529 EELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLING 588

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y  AG+  + L +F  M   G+  +A  Y  LI G     + N      A     EM+  
Sbjct: 589 YCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNING-----ALDIFQEMISS 643

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           G+ P+  T   +   F   ++++ A  +L+ ++
Sbjct: 644 GVYPDTITIRNMLTGFWSKEELERAVAMLEDLQ 676



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 80/178 (44%), Gaps = 19/178 (10%)

Query: 76  EIFHKMRTEGLTNNAVKMFDALSKDGLTH--------------EALQLFAQIKDKGHMPD 121
           E+F  M+   +  +A   F+ +  D LT+              EA +L+ ++  +G +PD
Sbjct: 484 EMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPD 543

Query: 122 VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDA 181
            + ++++I+      +  EA ++F+ M +   +PN  T+  LI G   A       + D 
Sbjct: 544 TITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGR-----VDDG 598

Query: 182 QKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
            +   EM  +G+  +A  Y  +   F +   ++ A  + Q+M + G  PD   ++  L
Sbjct: 599 LELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNML 656



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 11/157 (7%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F K+   GL  + V    +   L  D    EAL LF QI      PDV+  T ++     
Sbjct: 139 FGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQI----CRPDVLTFTTLMNGLCR 194

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            G+  EA+ +  RM+ +G+ P+  TY   + G+    D     L   +K  ME +   ++
Sbjct: 195 EGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGD-TVSALNLLRK--MEEISH-IK 250

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           PN   Y+A+ +   +  +  ++  L  +M+ KG  P+
Sbjct: 251 PNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPN 287



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 62/152 (40%), Gaps = 8/152 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E++ +M   G+  N +    M D   K      A  +F  +  KG  PDV   T +I+ Y
Sbjct: 344 ELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGY 403

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             A +  + + +   M   G+  N  TY  LI G     D NA     A     +M+  G
Sbjct: 404 CGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNA-----ALDLSQQMISSG 458

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           + P+  T   + +      K+ +A  + + M+
Sbjct: 459 VCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQ 490



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 9/127 (7%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
            + L+ +++ K    D+ + T +I+ + S  +   AL  F ++   G+ P+  T+  L+ 
Sbjct: 100 VISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLH 159

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           GL          L       +++  +  RP+  T+T +     R  +V EA  LL +M  
Sbjct: 160 GLC---------LDHRVSEALDLFHQICRPDVLTFTTLMNGLCREGRVVEAVALLDRMVE 210

Query: 226 KGFVPDE 232
            G  PD+
Sbjct: 211 NGLQPDQ 217



 Score = 45.8 bits (107), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 65/151 (43%), Gaps = 12/151 (7%)

Query: 91  VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           +K F + SK      AL  F ++   G  PDVV  T ++       +  EAL +F ++  
Sbjct: 123 IKCFCSCSKLPF---ALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQI-- 177

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
               P+  T+  L+ GL        +++ +A   L  MV  G++P+  TY    +   + 
Sbjct: 178 --CRPDVLTFTTLMNGLCR----EGRVV-EAVALLDRMVENGLQPDQITYGTFVDGMCKM 230

Query: 211 QKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
                A  LL++M+    +     +  A+ID
Sbjct: 231 GDTVSALNLLRKMEEISHIKPNVVIYSAIID 261


>gi|255660854|gb|ACU25596.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 418

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/188 (29%), Positives = 88/188 (46%), Gaps = 12/188 (6%)

Query: 50  KSKLPPPYDPFKKVVDEEPTDPRNLQEI--FHKMRTEGLTNNAVKMFDAL----SKDGLT 103
           + K+  P+D  +KV+ E   + R  + +  F+K   E     ++  F+ L     K+G  
Sbjct: 94  QHKIRVPFDTCRKVL-EHLMEFRYFKLVWDFYKEVLECGYPASLYFFNILMQRFCKEGEM 152

Query: 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
             A  +F  I   G  P VV+   +I  Y   G   E  R+   M ASG  P+ YTY++L
Sbjct: 153 RLAQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSIL 212

Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           I GL          L +A +   EM+  G+ PN  T+T +     + +KVD A  + +QM
Sbjct: 213 INGLCKEGK-----LDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQM 267

Query: 224 KAKGFVPD 231
            ++G  PD
Sbjct: 268 LSQGLSPD 275



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 8/158 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           EI+ +M ++GL+ + +    +   L K G   +   L  ++   G  PD +++T +I+  
Sbjct: 262 EIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKISYTTLIDGS 321

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G  + AL +  +M+   +  +   Y  LI  L    +G A   GDA+K L EM+  G
Sbjct: 322 CKEGDLEIALELRNKMIQESIRLDDVAYTALISCLCR--EGRA---GDAEKMLREMLSVG 376

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           ++P+ GTYT +   F + +    A  LL++M+  G VP
Sbjct: 377 LKPDNGTYTMIINEFCKKRDSKTASKLLREMQRDGPVP 414



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 79/161 (49%), Gaps = 10/161 (6%)

Query: 75  QEIFHKMRTEGLTNNAVKMFDALSKDGLTHE----ALQLFAQIKDKGHMPDVVAHTAVIE 130
            E+F++M   GL  N V  F  L      +E    A++++ Q+  +G  PD++ +  +I 
Sbjct: 226 NELFNEMLDNGLVPNGVT-FTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIY 284

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
                G+ K+   +   M+ +G+ P+  +Y  LI G  +  +G+ +I   A +   +M+ 
Sbjct: 285 GLCKKGELKQVHDLIDEMIMNGLKPDKISYTTLIDG--SCKEGDLEI---ALELRNKMIQ 339

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + +R +   YTA+     R  +  +A  +L++M + G  PD
Sbjct: 340 ESIRLDDVAYTALISCLCREGRAGDAEKMLREMLSVGLKPD 380



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 70/142 (49%), Gaps = 5/142 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K+G   EA +LF ++ D G +P+ V  T +I  +    +   A+ ++ +ML+ G
Sbjct: 212 LINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQG 271

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           ++P+  TY  LI GL    +     L      + EM+  G++P+  +YT + +   +   
Sbjct: 272 LSPDLITYNTLIYGLCKKGE-----LKQVHDLIDEMIMNGLKPDKISYTTLIDGSCKEGD 326

Query: 213 VDEARGLLQQMKAKGFVPDEKA 234
           ++ A  L  +M  +    D+ A
Sbjct: 327 LEIALELRNKMIQESIRLDDVA 348


>gi|357115764|ref|XP_003559656.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 867

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 89/175 (50%), Gaps = 13/175 (7%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F +M  EGL  + V    + D+L K   + EA ++F  I  KGH PD+++++ ++  Y
Sbjct: 363 KMFKEMTREGLIPDIVTFNSLMDSLCKHKRSKEAAEIFHSIATKGHKPDIISYSILLHGY 422

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           A+ G+  +   +F  M  +G+  +++ + +LI      A     ++ +A     EM G+G
Sbjct: 423 ATEGRFVDMNNLFHSMTDNGIVADSHCFNILIN-----AHAKRGMMDEALLIFTEMRGQG 477

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGF 247
           + PN  TY  V  A  R  ++ +A   L QM + G  P+   V  +LI    QGF
Sbjct: 478 VSPNVVTYATVIAALCRMGRLADAMEKLSQMISIGLKPN-TVVYHSLI----QGF 527



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 77/154 (50%), Gaps = 9/154 (5%)

Query: 81  MRTEGLTNNAVKMFDALSKDGLTHEALQ-LFAQIKDKGHMPDVVAHTAVIEAYASAGQGK 139
           +RT+G+  N       L     T EAL  L  ++ + G +PD  ++  VI++     + +
Sbjct: 196 LRTDGIVTNT--FLKCLCYAKRTDEALSMLLHRMSELGCVPDAFSYNTVIKSLCGGSRSQ 253

Query: 140 EALRVFMRML-ASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAG 198
           EAL + +RM    G +P+  +Y ++I GL    +     +  A     EMV KG+ PN  
Sbjct: 254 EALDMLLRMTKGDGCSPDVVSYTMVIHGLFMEGE-----ISKACNLFNEMVQKGVVPNVV 308

Query: 199 TYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           TY ++  A  +A+ +D+A  +L+QM      PDE
Sbjct: 309 TYNSIVHALCKARAMDKAELVLRQMFDNSIQPDE 342



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 76/162 (46%), Gaps = 9/162 (5%)

Query: 74  LQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQI-KDKGHMPDVVAHTAVI 129
           L  + H+M   G   +A     +  +L     + EAL +  ++ K  G  PDVV++T VI
Sbjct: 220 LSMLLHRMSELGCVPDAFSYNTVIKSLCGGSRSQEALDMLLRMTKGDGCSPDVVSYTMVI 279

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
                 G+  +A  +F  M+  GV PN  TY  ++  L       A+ +  A+  L +M 
Sbjct: 280 HGLFMEGEISKACNLFNEMVQKGVVPNVVTYNSIVHALC-----KARAMDKAELVLRQMF 334

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              ++P+  TYTA+   +    +  EA  + ++M  +G +PD
Sbjct: 335 DNSIQPDEVTYTAMIHGYSCLGRWKEAAKMFKEMTREGLIPD 376



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 82/163 (50%), Gaps = 9/163 (5%)

Query: 73  NLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           ++  +FH M   G+  ++     + +A +K G+  EAL +F +++ +G  P+VV +  VI
Sbjct: 430 DMNNLFHSMTDNGIVADSHCFNILINAHAKRGMMDEALLIFTEMRGQGVSPNVVTYATVI 489

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
            A    G+  +A+    +M++ G+ PN   Y  LI+G     D     L  A++ + EM+
Sbjct: 490 AALCRMGRLADAMEKLSQMISIGLKPNTVVYHSLIQGFCTHGD-----LIKAKELVSEMM 544

Query: 190 GKGM-RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +G+ RPN   ++++  +     +V  A+ +   +   G  PD
Sbjct: 545 DQGIPRPNITFFSSIIHSLCNEGRVMNAQDVFNLVIHIGDRPD 587



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 78/178 (43%), Gaps = 14/178 (7%)

Query: 55  PPYDPFKKVVDEEPTDPR--NLQEIFHKM-----RTEGLTNNAVKMFDALSKDGLTHEAL 107
           P    F  ++     + R  N Q++F+ +     R +  T N+  + D     G   +A 
Sbjct: 551 PNITFFSSIIHSLCNEGRVMNAQDVFNLVIHIGDRPDIFTFNS--LIDGYCLVGKMDKAF 608

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
            +   +   G  PDVV ++ +I  Y  +G+  + L +F  ML   V P   TY++++ GL
Sbjct: 609 GVLDAMVSAGTEPDVVTYSTLINGYFKSGRIDDGLILFREMLCKRVKPTTVTYSLVLDGL 668

Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
             A   +A     A+K   EM+  G   +  TYT + +   R    DEA  L  ++ A
Sbjct: 669 FRAGRTSA-----AKKMFHEMIESGTAMSISTYTIILQGLCRNNCTDEAITLFHKLGA 721



 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 69/157 (43%), Gaps = 9/157 (5%)

Query: 75  QEIFHKMRTEGLTNNAVKMFDA----LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           +E+  +M  +G+    +  F +    L  +G    A  +F  +   G  PD+    ++I+
Sbjct: 537 KELVSEMMDQGIPRPNITFFSSIIHSLCNEGRVMNAQDVFNLVIHIGDRPDIFTFNSLID 596

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
            Y   G+  +A  V   M+++G  P+  TY+ LI G   +       + D      EM+ 
Sbjct: 597 GYCLVGKMDKAFGVLDAMVSAGTEPDVVTYSTLINGYFKSGR-----IDDGLILFREMLC 651

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
           K ++P   TY+ V +   RA +   A+ +  +M   G
Sbjct: 652 KRVKPTTVTYSLVLDGLFRAGRTSAAKKMFHEMIESG 688



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 80/189 (42%), Gaps = 24/189 (12%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F++M  +G+  N V    +  AL K     +A  +  Q+ D    PD V +TA+I  Y+
Sbjct: 294 LFNEMVQKGVVPNVVTYNSIVHALCKARAMDKAELVLRQMFDNSIQPDEVTYTAMIHGYS 353

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G+ KEA ++F  M   G+ P+  T+  L+  L        K   +A +    +  KG 
Sbjct: 354 CLGRWKEAAKMFKEMTREGLIPDIVTFNSLMDSLC-----KHKRSKEAAEIFHSIATKGH 408

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA-------------VKEALI 240
           +P+  +Y+ +   +    +  +   L   M   G V D                + EAL+
Sbjct: 409 KPDIISYSILLHGYATEGRFVDMNNLFHSMTDNGIVADSHCFNILINAHAKRGMMDEALL 468

Query: 241 ---DKRGQG 246
              + RGQG
Sbjct: 469 IFTEMRGQG 477



 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 75/160 (46%), Gaps = 11/160 (6%)

Query: 76  EIFHKMRTEGLTNNAVKMFDALSKDGLTH----EALQLFAQIKDKGH-MPDVVAHTAVIE 130
           E   +M + GL  N V ++ +L +   TH    +A +L +++ D+G   P++   +++I 
Sbjct: 503 EKLSQMISIGLKPNTV-VYHSLIQGFCTHGDLIKAKELVSEMMDQGIPRPNITFFSSIIH 561

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
           +  + G+   A  VF  ++  G  P+ +T+  LI G           +  A   L  MV 
Sbjct: 562 SLCNEGRVMNAQDVFNLVIHIGDRPDIFTFNSLIDGYCLVGK-----MDKAFGVLDAMVS 616

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
            G  P+  TY+ +   + ++ ++D+   L ++M  K   P
Sbjct: 617 AGTEPDVVTYSTLINGYFKSGRIDDGLILFREMLCKRVKP 656



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/157 (21%), Positives = 67/157 (42%), Gaps = 5/157 (3%)

Query: 99  KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAY 158
           K G   + L LF ++  K   P  V ++ V++    AG+   A ++F  M+ SG A +  
Sbjct: 635 KSGRIDDGLILFREMLCKRVKPTTVTYSLVLDGLFRAGRTSAAKKMFHEMIESGTAMSIS 694

Query: 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218
           TY ++++GL            +A     ++    ++        +  A  + ++ +EA  
Sbjct: 695 TYTIILQGLC-----RNNCTDEAITLFHKLGAMNLKFEIAILNTMIHALYKVKRREEAHD 749

Query: 219 LLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILF 255
           L   + A G VP+       +I+   +G     +I+F
Sbjct: 750 LFASVSASGLVPNASTYGVMIINLLKEGSVEEADIMF 786



 Score = 40.4 bits (93), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 46/96 (47%), Gaps = 3/96 (3%)

Query: 75  QEIFHKMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +++FH+M   G     +    +   L ++  T EA+ LF ++       ++     +I A
Sbjct: 678 KKMFHEMIESGTAMSISTYTIILQGLCRNNCTDEAITLFHKLGAMNLKFEIAILNTMIHA 737

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
                + +EA  +F  + ASG+ PNA TY V+I  L
Sbjct: 738 LYKVKRREEAHDLFASVSASGLVPNASTYGVMIINL 773


>gi|255540881|ref|XP_002511505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550620|gb|EEF52107.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 876

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 84/162 (51%), Gaps = 8/162 (4%)

Query: 74  LQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           + ++  +M  +G   N V   ++  +  +    ++A+ +F +++  G  PD V +  +I+
Sbjct: 399 INKLLDQMVKDGCQPNVVTYNRLIHSYGRANYLNDAVDVFNEMQRVGCEPDRVTYCTLID 458

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
            +A AG    AL ++ RM A+G++P+ +TY+V+I  L     G A  L  A K   EMV 
Sbjct: 459 IHAKAGFLDFALEMYQRMQAAGLSPDTFTYSVIINCL-----GKAGHLAAAHKLFCEMVE 513

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           +G  PN  TY  +     +A+    A  L + M++ GF PD+
Sbjct: 514 QGCVPNLVTYNIMIALQAKARNYQSALKLYRDMQSAGFQPDK 555



 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 82/173 (47%), Gaps = 9/173 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F++M+  G   + V    + D  +K G    AL+++ +++  G  PD   ++ +I   
Sbjct: 436 DVFNEMQRVGCEPDRVTYCTLIDIHAKAGFLDFALEMYQRMQAAGLSPDTFTYSVIINCL 495

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             AG    A ++F  M+  G  PN  TY ++I     A    A+    A K   +M   G
Sbjct: 496 GKAGHLAAAHKLFCEMVEQGCVPNLVTYNIMI-----ALQAKARNYQSALKLYRDMQSAG 550

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
            +P+  TY+ V E       +DEA  +  +MK K +VPDE  V   L+D  G+
Sbjct: 551 FQPDKVTYSIVMEVLGHCGYLDEAEAVFSEMKRKNWVPDE-PVYGLLVDLWGK 602



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 85/188 (45%), Gaps = 33/188 (17%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E++ +M+  GL+ +      + + L K G    A +LF ++ ++G +P++V +  +I   
Sbjct: 471 EMYQRMQAAGLSPDTFTYSVIINCLGKAGHLAAAHKLFCEMVEQGCVPNLVTYNIMIALQ 530

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK--------------------------- 165
           A A   + AL+++  M ++G  P+  TY+++++                           
Sbjct: 531 AKARNYQSALKLYRDMQSAGFQPDKVTYSIVMEVLGHCGYLDEAEAVFSEMKRKNWVPDE 590

Query: 166 ---GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
              GL     G A  +  A ++   M+  G+RPN  T  ++  AF+R  K+ +A  LLQ 
Sbjct: 591 PVYGLLVDLWGKAGNVEKAWQWYQTMLNTGLRPNVPTCNSLLSAFLRVHKLADAYNLLQS 650

Query: 223 MKAKGFVP 230
           M   G  P
Sbjct: 651 MLELGLNP 658



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 54/127 (42%), Gaps = 6/127 (4%)

Query: 106 ALQLFAQIKDK-GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           AL  F  +K + G   D   +T ++     A Q     ++  +M+  G  PN  TY  LI
Sbjct: 363 ALNFFYWLKRQPGFNHDGHTYTTMVGILGRAKQFGAINKLLDQMVKDGCQPNVVTYNRLI 422

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
                   G A  L DA     EM   G  P+  TY  + +   +A  +D A  + Q+M+
Sbjct: 423 HSY-----GRANYLNDAVDVFNEMQRVGCEPDRVTYCTLIDIHAKAGFLDFALEMYQRMQ 477

Query: 225 AKGFVPD 231
           A G  PD
Sbjct: 478 AAGLSPD 484


>gi|224126121|ref|XP_002329666.1| predicted protein [Populus trichocarpa]
 gi|222870547|gb|EEF07678.1| predicted protein [Populus trichocarpa]
          Length = 821

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 79/158 (50%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNN---AVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +MR++GL  +      +  A  ++GL  EA + F  +K +G+ P  V + A+++ + 
Sbjct: 267 LLDEMRSKGLGFDEFTCSTVISACGREGLLDEAKEFFVGLKSQGYAPGTVTYNALLQVFG 326

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG   EAL +   M  +   P+A TY  L+     AA   A    +    +  M   G+
Sbjct: 327 KAGIYSEALSIMKEMEDNNCPPDAVTYNELV-----AAYVRAGFYEEGAALIDTMTENGI 381

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +PNA TYT +  A+ RA +VD+A  L  QMK  G  P+
Sbjct: 382 KPNAVTYTTMINAYGRAAQVDKALSLYDQMKESGCAPN 419



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 8/145 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            EI H ++  GL  + V    + D  ++ G   +A ++  ++++ G   D++++  VI+ 
Sbjct: 650 HEIMHLIQECGLQPDLVTYNSLMDLYARGGECWKAEEILRELQNSGDKSDLISYNTVIKG 709

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +   G   EALR    M++ G+ P   TY   + G AA       +  +  + L  M   
Sbjct: 710 FCRQGLMHEALRTLSEMISRGIRPCIVTYNTFVGGYAAKG-----MFAEIDEVLSYMTKH 764

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEA 216
             RPN  TY  V + + +A+K  EA
Sbjct: 765 DCRPNELTYKIVVDGYCKAKKFKEA 789



 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 12/162 (7%)

Query: 75  QEIFHKMRTEG-----LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           +E F  ++++G     +T NA  +     K G+  EAL +  +++D    PD V +  ++
Sbjct: 300 KEFFVGLKSQGYAPGTVTYNA--LLQVFGKAGIYSEALSIMKEMEDNNCPPDAVTYNELV 357

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
            AY  AG  +E   +   M  +G+ PNA TY  +I      A G A  +  A     +M 
Sbjct: 358 AAYVRAGFYEEGAALIDTMTENGIKPNAVTYTTMIN-----AYGRAAQVDKALSLYDQMK 412

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             G  PN  TY A+     +  + +E   +L  MK  G  P+
Sbjct: 413 ESGCAPNVCTYNAILGMLGKKSQSEEMMKILCDMKVDGCAPN 454



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 76/191 (39%), Gaps = 33/191 (17%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +   M   G+  NAV    M +A  +     +AL L+ Q+K+ G  P+V  + A++    
Sbjct: 372 LIDTMTENGIKPNAVTYTTMINAYGRAAQVDKALSLYDQMKESGCAPNVCTYNAILGMLG 431

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLI-----KGL--------------------- 167
              Q +E +++   M   G APN  T+  ++     KG+                     
Sbjct: 432 KKSQSEEMMKILCDMKVDGCAPNRITWNTMLSMCGNKGMHKYVKRVFQEMKSCGFEPDRD 491

Query: 168 ----AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
                  A G      DA+K   EM+  G  P+  TY A+  A  R      A  +++ M
Sbjct: 492 TFNTLITASGRCGSDIDAEKIYDEMLEAGFTPSVATYNALLNALARRGDWRTAESVIKDM 551

Query: 224 KAKGFVPDEKA 234
           K KGF P E +
Sbjct: 552 KNKGFKPSETS 562



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 72/146 (49%), Gaps = 5/146 (3%)

Query: 86  LTNNAVK-MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRV 144
           L N AV+ M   L ++     A +LF  I    +  DV A+T ++ +Y+  G+ + A+ +
Sbjct: 172 LDNQAVELMARILGRESQHSIASKLFDVIPLDDYSLDVRAYTTILHSYSRCGKYERAVAI 231

Query: 145 FMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVF 204
           F +M  SG++P   TY V++           KILG     L EM  KG+  +  T + V 
Sbjct: 232 FEKMNESGLSPTLVTYNVMLDVYGKMGRSWNKILG----LLDEMRSKGLGFDEFTCSTVI 287

Query: 205 EAFVRAQKVDEARGLLQQMKAKGFVP 230
            A  R   +DEA+     +K++G+ P
Sbjct: 288 SACGREGLLDEAKEFFVGLKSQGYAP 313



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 65/149 (43%), Gaps = 8/149 (5%)

Query: 88  NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMR 147
           N+ + MF   +     HE + L   I++ G  PD+V + ++++ YA  G+  +A  +   
Sbjct: 634 NSMLSMFSRKNMHDRAHEIMHL---IQECGLQPDLVTYNSLMDLYARGGECWKAEEILRE 690

Query: 148 MLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAF 207
           +  SG   +  +Y  +IKG          ++ +A + L EM+ +G+RP   TY      +
Sbjct: 691 LQNSGDKSDLISYNTVIKGFCRQG-----LMHEALRTLSEMISRGIRPCIVTYNTFVGGY 745

Query: 208 VRAQKVDEARGLLQQMKAKGFVPDEKAVK 236
                  E   +L  M      P+E   K
Sbjct: 746 AAKGMFAEIDEVLSYMTKHDCRPNELTYK 774



 Score = 41.6 bits (96), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 40/213 (18%), Positives = 82/213 (38%), Gaps = 16/213 (7%)

Query: 30  TLQRSLSSSSDQPTKKYVN------TKSKLPPPYDPFKKVVDEEPTDPRNL--QEIFHKM 81
           T    LS   ++   KYV             P  D F  ++        ++  ++I+ +M
Sbjct: 457 TWNTMLSMCGNKGMHKYVKRVFQEMKSCGFEPDRDTFNTLITASGRCGSDIDAEKIYDEM 516

Query: 82  RTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQG 138
              G T +      + +AL++ G    A  +   +K+KG  P   +++ ++ +YA  G  
Sbjct: 517 LEAGFTPSVATYNALLNALARRGDWRTAESVIKDMKNKGFKPSETSYSLILNSYAKGGYV 576

Query: 139 KEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAG 198
           K   R+   +    + P+      LI      A+   + L   ++    +   G +P+  
Sbjct: 577 KGINRIEKDIYDGHIFPSWMLLRTLI-----LANFKCRALAGMERAFQALQKHGYKPDLV 631

Query: 199 TYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            + ++   F R    D A  ++  ++  G  PD
Sbjct: 632 VFNSMLSMFSRKNMHDRAHEIMHLIQECGLQPD 664



 Score = 41.6 bits (96), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 26/121 (21%), Positives = 52/121 (42%), Gaps = 5/121 (4%)

Query: 110 FAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169
           F  ++  G+ PD+V   +++  ++       A  +   +   G+ P+  TY  L+   A 
Sbjct: 618 FQALQKHGYKPDLVVFNSMLSMFSRKNMHDRAHEIMHLIQECGLQPDLVTYNSLMDLYAR 677

Query: 170 AADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFV 229
             +        A++ L E+   G + +  +Y  V + F R   + EA   L +M ++G  
Sbjct: 678 GGE-----CWKAEEILRELQNSGDKSDLISYNTVIKGFCRQGLMHEALRTLSEMISRGIR 732

Query: 230 P 230
           P
Sbjct: 733 P 733


>gi|147742764|gb|ABQ50546.1| hypothetical protein [Brassica rapa]
          Length = 650

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 86/185 (46%), Gaps = 10/185 (5%)

Query: 52  KLPPPYDPFKKVVDEEPTDPR--NLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEA 106
           K+ P    +  ++D    D R  +    F +M T+G+  N      +  +    G   + 
Sbjct: 260 KIKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDG 319

Query: 107 LQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKG 166
            QL   +  +   P+VV  +A+I++    G+  EA  ++  M+  G+ PN  TY  LI G
Sbjct: 320 AQLLRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYG 379

Query: 167 LAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK 226
           L      N K L +A + +  MV KG  P+  TY  +   F +A++VD+   L ++M  +
Sbjct: 380 LC-----NDKRLDEANQMMDLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLR 434

Query: 227 GFVPD 231
           G + D
Sbjct: 435 GMIAD 439



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 81/158 (51%), Gaps = 8/158 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++   M T  +T N V    + D+L K+G   EA  L+ ++  +G  P+ + + ++I   
Sbjct: 321 QLLRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGL 380

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
            +  +  EA ++   M++ G  P+ +TY +LI G        AK + D  +   +M  +G
Sbjct: 381 CNDKRLDEANQMMDLMVSKGCDPDIWTYNILINGFC-----KAKQVDDGMRLFRKMSLRG 435

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           M  +  TY+ + + F +++K+  A+ + Q+M ++G  P
Sbjct: 436 MIADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGVHP 473



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 66/135 (48%), Gaps = 5/135 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L  +G   EA++L   +    H+PD++    ++       +  EA+ +  RM+A+G
Sbjct: 166 LLNGLCLEGRVFEAVELVDCMVLSQHVPDLITLNTIVNGLCLKDRVSEAVDLIARMMANG 225

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN +TY  ++  +  +  GN      A   L +M  + ++P+  TYT + +   +  +
Sbjct: 226 CQPNQFTYGPILNRMCKS--GNT---ASALDLLRKMEHRKIKPHVVTYTIIIDNLCKDGR 280

Query: 213 VDEARGLLQQMKAKG 227
           +D+A     +M+ KG
Sbjct: 281 LDDALSFFSEMETKG 295



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +   K     + ++LF ++  +G + D V ++ +I+ +  + +   A +VF  M++ G
Sbjct: 411 LINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQG 470

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V P   TYA+L+ GL    +     L +A   L +M    M  + G Y  +      A K
Sbjct: 471 VHPGIMTYAILLDGLCDNGE-----LEEALGILDQMHKCKMELDIGIYNIIIHGMCNANK 525

Query: 213 VDEARGLLQQMKAKGFVPD 231
           VD+A  L   + +KG   D
Sbjct: 526 VDDAWSLFCSLPSKGVKRD 544



 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 84/186 (45%), Gaps = 9/186 (4%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +++F +M ++G+    +    + D L  +G   EAL +  Q+       D+  +  +I  
Sbjct: 460 KKVFQEMVSQGVHPGIMTYAILLDGLCDNGELEEALGILDQMHKCKMELDIGIYNIIIHG 519

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
             +A +  +A  +F  + + GV  +  +Y +++ GL   +      L +A     +M   
Sbjct: 520 MCNANKVDDAWSLFCSLPSKGVKRDIQSYNIMLSGLCKRSS-----LSEADALFRKMKED 574

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL-IDKRGQGFRGV 250
           G  P+  TY  +  A +R   +  +  L+++MK  GF  D   VK  + +   G+  +  
Sbjct: 575 GYEPDGCTYNTLIRAHLRGNDITTSVQLIEEMKRCGFSSDASTVKIVMDMLSSGELDKSF 634

Query: 251 INILFG 256
           +N+L G
Sbjct: 635 LNMLSG 640


>gi|224149779|ref|XP_002336862.1| predicted protein [Populus trichocarpa]
 gi|222837029|gb|EEE75408.1| predicted protein [Populus trichocarpa]
          Length = 370

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 65/127 (51%), Gaps = 6/127 (4%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA + F  +KDK   PDV+ +T ++  +  AG   EA RVF  M  +G+ PN YTY+++I
Sbjct: 235 EAQEFFDSLKDKFE-PDVIVYTNLVRGWCRAGNISEAERVFGEMKVAGIKPNVYTYSIVI 293

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
             L          +  A     EM+  G +PN+ TY ++    V+A + ++   +  QMK
Sbjct: 294 DSLCRCGQ-----ITRAHDVFAEMLDAGCQPNSITYNSLMRIHVKAGRTEKVLQVYNQMK 348

Query: 225 AKGFVPD 231
             G  PD
Sbjct: 349 RLGCEPD 355



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 5/111 (4%)

Query: 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
           G   EA ++F ++K  G  P+V  ++ VI++    GQ   A  VF  ML +G  PN+ TY
Sbjct: 265 GNISEAERVFGEMKVAGIKPNVYTYSIVIDSLCRCGQITRAHDVFAEMLDAGCQPNSITY 324

Query: 161 AVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
             L++ +   A    K+L   Q Y  +M   G  P+  TY  + E   + +
Sbjct: 325 NSLMR-IHVKAGRTEKVL---QVY-NQMKRLGCEPDTVTYNFLIETHCKDE 370



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 50/94 (53%), Gaps = 3/94 (3%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +F +M+  G+  N      + D+L + G    A  +FA++ D G  P+ + + +++  
Sbjct: 271 ERVFGEMKVAGIKPNVYTYSIVIDSLCRCGQITRAHDVFAEMLDAGCQPNSITYNSLMRI 330

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           +  AG+ ++ L+V+ +M   G  P+  TY  LI+
Sbjct: 331 HVKAGRTEKVLQVYNQMKRLGCEPDTVTYNFLIE 364



 Score = 43.9 bits (102), Expect = 0.073,   Method: Compositional matrix adjust.
 Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 6/110 (5%)

Query: 122 VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDA 181
           V   + ++  Y  AG   EA+  F RM      P+   +++LI  L        +   +A
Sbjct: 182 VETFSILMRRYVRAGLAAEAIHAFNRMEDYNCKPDKIAFSILISILC-----RKRRASEA 236

Query: 182 QKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           Q++   +  K   P+   YT +   + RA  + EA  +  +MK  G  P+
Sbjct: 237 QEFFDSLKDK-FEPDVIVYTNLVRGWCRAGNISEAERVFGEMKVAGIKPN 285


>gi|356510655|ref|XP_003524052.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic-like [Glycine max]
          Length = 712

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 87/166 (52%), Gaps = 10/166 (6%)

Query: 74  LQEIFHKMRTEGLTNNAVKMFDALS---KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           ++++ H+M   G+  + +     +S   K  L  +A+  F ++   G MPD V ++A+++
Sbjct: 208 IEDLAHQMIDNGVPLDNITYSTIISCAKKCNLYDKAVHWFERMYKTGLMPDEVTYSAILD 267

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM-EMV 189
            YA  G+ +E + ++ R  A+G  P+  T++VL K    A D       D  +Y+  EM 
Sbjct: 268 VYARLGKVEEVISLYERGRATGWKPDPITFSVLGKMFGEAGD------YDGIRYVFQEME 321

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAV 235
             G++PN   Y  + EA  +A K   ARGL ++M   G VP+EK +
Sbjct: 322 SVGVQPNLVVYNTLLEAMGKAGKPGFARGLFEEMIESGIVPNEKTL 367



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 84/193 (43%), Gaps = 21/193 (10%)

Query: 72  RNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHM-PDVVAHTA 127
           R+  E++ +M+  G   + +    + +  +  GL  EA  LF  +K   H  PD  ++TA
Sbjct: 381 RDALELWQRMKENGWPMDFILYNTLLNMCADVGLVEEAETLFRDMKQSVHCKPDSWSYTA 440

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           ++  Y S G   +A+++F  M   GV  N   +  LI+ L     G A    D  +    
Sbjct: 441 MLNIYGSQGDVDKAMKLFDEMCKLGVELNVMGFTCLIQCL-----GRAMEFDDLVRVFDI 495

Query: 188 MVGKGMRPN---AGTYTAVFEAFVRAQKVDEARGLLQQMKAK-----GFVPDEKAVKEAL 239
            V +G++P+    G   +V      +   ++    LQQ   K       + DEK   E +
Sbjct: 496 SVERGIKPDDRLCGCLLSVVSLSQGSNDEEKVLACLQQANPKLVAFIHLIEDEKTSFETV 555

Query: 240 IDKRGQGFRGVIN 252
            ++    F+G+++
Sbjct: 556 KEE----FKGIMS 564



 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 10/134 (7%)

Query: 92  KMF-DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           KMF +A   DG+ +    +F +++  G  P++V +  ++EA   AG+   A  +F  M+ 
Sbjct: 302 KMFGEAGDYDGIRY----VFQEMESVGVQPNLVVYNTLLEAMGKAGKPGFARGLFEEMIE 357

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
           SG+ PN  T   +IK       G A+   DA +    M   G   +   Y  +       
Sbjct: 358 SGIVPNEKTLTAVIK-----IYGKARWSRDALELWQRMKENGWPMDFILYNTLLNMCADV 412

Query: 211 QKVDEARGLLQQMK 224
             V+EA  L + MK
Sbjct: 413 GLVEEAETLFRDMK 426


>gi|242045394|ref|XP_002460568.1| hypothetical protein SORBIDRAFT_02g030880 [Sorghum bicolor]
 gi|241923945|gb|EER97089.1| hypothetical protein SORBIDRAFT_02g030880 [Sorghum bicolor]
          Length = 389

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 79/158 (50%), Gaps = 8/158 (5%)

Query: 74  LQEIFHK-MRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           L E+ H+ +  + L    V   +AL +     EA +L   ++ +G  PD+V +  VI   
Sbjct: 210 LDEMLHRGIPADPLAYTTV--LNALCRKKQLREAYRLLCLMRGRGVSPDIVHYNTVIVGM 267

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+  +A +V   M+ SG  PNA TYA ++ GL  +      +   A+ YL++MVGKG
Sbjct: 268 CREGRPLDACKVVGDMMESGCTPNAVTYATVVNGLCVSG-----LYDKAETYLVDMVGKG 322

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           + P+   + +V +      KV+EA  ++  M   G VP
Sbjct: 323 LVPHFSVFHSVIKGCCTVGKVEEAAQIMSWMLDLGVVP 360



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 8/130 (6%)

Query: 105 EALQLFAQIKDKGHMPD---VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYA 161
            AL L   +  +  +P    + +H  +I+A A +G    +L +F R+ +  V+P+A TY 
Sbjct: 132 SALHLLRLVSSRLPLPAPLVLASHNLLIDAAARSGHVAVSLSLFHRLRSLHVSPDADTYR 191

Query: 162 VLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221
           +L + L   A      +  A   L EM+ +G+  +   YT V  A  R +++ EA  LL 
Sbjct: 192 ILTQSLCRKAQ-----VRTAATLLDEMLHRGIPADPLAYTTVLNALCRKKQLREAYRLLC 246

Query: 222 QMKAKGFVPD 231
            M+ +G  PD
Sbjct: 247 LMRGRGVSPD 256


>gi|414592066|tpg|DAA42637.1| TPA: hypothetical protein ZEAMMB73_021738 [Zea mays]
          Length = 768

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 81/161 (50%), Gaps = 12/161 (7%)

Query: 76  EIFHKMRTEGL-----TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           ++ ++M  EG      T N +   + L K G   +A  +      KG++PDV     +I+
Sbjct: 406 QVMNEMVEEGCHPDIWTYNII--INGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTLID 463

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
            Y    +   AL++  RM   G+AP+  TY  ++ GL  A  G AK   +  +   EM+ 
Sbjct: 464 GYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLCKA--GKAK---EVNETFEEMIL 518

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           KG RPNA TY  + E F +  +++EA G++ +M   G VPD
Sbjct: 519 KGCRPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPD 559



 Score = 70.1 bits (170), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 70/141 (49%), Gaps = 5/141 (3%)

Query: 91  VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
             + + L  +G    AL+LF + + K   PD+V + ++++     G    AL+V   M+ 
Sbjct: 354 CSLINGLCAEGDIERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVE 413

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
            G  P+ +TY ++I GL     GN   + DA   + + + KG  P+  T+  + + + + 
Sbjct: 414 EGCHPDIWTYNIIINGLCKM--GN---ISDAAVVMNDAIVKGYLPDVFTFNTLIDGYCKR 468

Query: 211 QKVDEARGLLQQMKAKGFVPD 231
            K+D A  L+++M   G  PD
Sbjct: 469 LKLDSALQLVERMWTYGIAPD 489



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 5/136 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   K      ALQL  ++   G  PDV+ + +V+     AG+ KE    F  M+  G
Sbjct: 461 LIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNETFEEMILKG 520

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PNA TY +LI+            L +A   ++ M   G+ P+A ++  +   F R   
Sbjct: 521 CRPNAITYNILIENFC-----KINQLEEASGVIVRMCQDGLVPDAVSFNTLIHGFCRNGD 575

Query: 213 VDEARGLLQQMKAKGF 228
           +D A  L Q++  KG+
Sbjct: 576 LDGAYLLFQKLDEKGY 591



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 74/155 (47%), Gaps = 8/155 (5%)

Query: 80  KMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           +M  +GL  +AV    +     ++G    A  LF ++ +KG+         +I AY+S  
Sbjct: 550 RMCQDGLVPDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKL 609

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196
             + A ++F  M++ G  P+ YTY +L+ GL  AA+     +  A  +L EM+ KG  P+
Sbjct: 610 NMQMAEKIFGEMISKGYKPDLYTYRILVDGLCKAAN-----VDRAYAHLAEMISKGFVPS 664

Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             T+  +        +V EA  ++  M   G VP+
Sbjct: 665 MATFGRMLNLLAMNHRVSEAVAIIHIMVRMGVVPE 699



 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 63/139 (45%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   K G+  EA +L      KG +PD V + ++I    + G  + AL +F    A  
Sbjct: 321 IIDGYCKSGMLQEATELLKDAVFKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKD 380

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+   Y  L+KGL         ++  A + + EMV +G  P+  TY  +     +   
Sbjct: 381 LKPDLVVYNSLVKGLCRQG-----LILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGN 435

Query: 213 VDEARGLLQQMKAKGFVPD 231
           + +A  ++     KG++PD
Sbjct: 436 ISDAAVVMNDAIVKGYLPD 454



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 6/135 (4%)

Query: 97  LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
           L +DG   EA+ L  ++      PDVV +  ++       + +EA +   RM+  G  P+
Sbjct: 256 LCEDGRLEEAVALVERMGAYV-APDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPD 314

Query: 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
            +TY  +I G   +      +L +A + L + V KG  P+  TY ++         ++ A
Sbjct: 315 DFTYNTIIDGYCKSG-----MLQEATELLKDAVFKGFVPDRVTYCSLINGLCAEGDIERA 369

Query: 217 RGLLQQMKAKGFVPD 231
             L  + +AK   PD
Sbjct: 370 LELFNEAQAKDLKPD 384



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 6/136 (4%)

Query: 97  LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
           L   G  + A  LF ++  +   PDV     V+ A    G   E+  +  ++L  G++ N
Sbjct: 186 LYAHGHGYNARHLFDEMLGRDVFPDVATFNNVLHALCQKGDVMESGALLAKVLKRGMSAN 245

Query: 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
            +T  + I+GL    DG    L +A   L+E +G  + P+  TY  +     +  KV EA
Sbjct: 246 KFTCNIWIRGLCE--DGR---LEEAVA-LVERMGAYVAPDVVTYNTLMRGLCKDSKVQEA 299

Query: 217 RGLLQQMKAKGFVPDE 232
              L +M  +G +PD+
Sbjct: 300 AQYLGRMMNQGCIPDD 315



 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 73/174 (41%), Gaps = 42/174 (24%)

Query: 91  VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           V    A ++ G    A+  F ++      P   A+ A+++A  +A    +A +V++RMLA
Sbjct: 75  VASIQAYARAGRLRAAVDAFERMDLFACPPAAPAYNAIMDALVNAAYHDQAHKVYVRMLA 134

Query: 151 SGVAPNAYT-----------------------------------YAVLIKGLAAAADG-N 174
           +GVAP+A T                                   Y  +++GL A   G N
Sbjct: 135 AGVAPDARTHTVRLKSFCLTGRPHVALRLLRSLSERGCDAKPAAYCTVVRGLYAHGHGYN 194

Query: 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
           A+ L D      EM+G+ + P+  T+  V  A  +   V E+  LL ++  +G 
Sbjct: 195 ARHLFD------EMLGRDVFPDVATFNNVLHALCQKGDVMESGALLAKVLKRGM 242



 Score = 42.7 bits (99), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 5/103 (4%)

Query: 125 HTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKY 184
           + A I+AYA AG+ + A+  F RM      P A  Y  ++  L      NA     A K 
Sbjct: 74  YVASIQAYARAGRLRAAVDAFERMDLFACPPAAPAYNAIMDALV-----NAAYHDQAHKV 128

Query: 185 LMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
            + M+  G+ P+A T+T   ++F    +   A  LL+ +  +G
Sbjct: 129 YVRMLAAGVAPDARTHTVRLKSFCLTGRPHVALRLLRSLSERG 171


>gi|225430190|ref|XP_002282419.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial [Vitis vinifera]
 gi|296081989|emb|CBI20994.3| unnamed protein product [Vitis vinifera]
          Length = 597

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 76/160 (47%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           ++++  M+ E +    V    + +   +   + +A++L  +++ KG  P+V+ +  +I++
Sbjct: 271 EQLWRTMKRENVKPTVVTYGTLVEGYCRMRRSEKAIELVGEMRGKGIEPNVIVYNPIIDS 330

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
            A AG+ KEA+ +  R L S   P   TY  L+KG   A D     L  A K L  M+ +
Sbjct: 331 LAEAGRFKEAMGMMERCLVSETGPTISTYNSLVKGFCKAGD-----LVGASKVLKMMISR 385

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G  P   TY   F  F R  K +E   L  +M   G  PD
Sbjct: 386 GFDPTLTTYNYFFRYFSRCGKTEEGMNLYTKMIESGHTPD 425



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/143 (23%), Positives = 63/143 (44%), Gaps = 8/143 (5%)

Query: 88  NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMR 147
           N+ VK F    K G    A ++   +  +G  P +  +      ++  G+ +E + ++ +
Sbjct: 360 NSLVKGF---CKAGDLVGASKVLKMMISRGFDPTLTTYNYFFRYFSRCGKTEEGMNLYTK 416

Query: 148 MLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAF 207
           M+ SG  P+  TY +LIK +        + L  A +   EM  +G   +  T T +    
Sbjct: 417 MIESGHTPDRLTYHLLIKMMC-----EEERLDLAVQVSKEMRARGCDLDLATSTMLVHLL 471

Query: 208 VRAQKVDEARGLLQQMKAKGFVP 230
            +  +++EA    + M  +G VP
Sbjct: 472 CKMHRLEEAFAEFEDMIRRGIVP 494


>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 754

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 81/159 (50%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F +MR++G   +      + D+L   G   EAL +  Q++  G    V+ +  +I+ +
Sbjct: 421 ELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGF 480

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             A + +EA  +F  M   GV+ N+ TY  LI GL       ++ + DA + + +M+ +G
Sbjct: 481 CKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLC-----KSRRVEDASQLMDQMIMEG 535

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +P+  TY ++   F R   + +A  ++Q M + G  PD
Sbjct: 536 QKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPD 574



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 88/187 (47%), Gaps = 21/187 (11%)

Query: 72  RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R  +EIF +M   G++ N+V    + D L K     +A QL  Q+  +G  PD   + ++
Sbjct: 487 REAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTYNSL 546

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL--M 186
           +  +   G  K+A  +   M ++G  P+  TY  LI GL  A  G  ++   A K L  +
Sbjct: 547 LTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKA--GRVEV---ASKLLRSI 601

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG-FVPDEKAVKEALIDKRGQ 245
           +M G  + P+A  Y  V +   R +K  EA  L ++M  +    PD  AV   ++     
Sbjct: 602 QMKGIALTPHA--YNPVIQGLFRKRKTTEAINLFREMLEQNEAAPD--AVSYRIV----- 652

Query: 246 GFRGVIN 252
            FRG+ N
Sbjct: 653 -FRGLCN 658



 Score = 70.1 bits (170), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 67/126 (53%), Gaps = 5/126 (3%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A++LF +++ KG  PD   +  +I++  S G+  EAL +  +M  SG A +  TY  LI 
Sbjct: 419 AMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLID 478

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G   A       + +A++   EM   G+  N+ TY  + +   ++++V++A  L+ QM  
Sbjct: 479 GFCKANK-----IREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIM 533

Query: 226 KGFVPD 231
           +G  PD
Sbjct: 534 EGQKPD 539



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 64/137 (46%), Gaps = 6/137 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDK-GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
              K+G   +AL    ++ ++ G  PD      ++     AG  K A+ +   ML  G  
Sbjct: 268 GFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYD 327

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
           P+ YTY  +I GL    +     + +A ++L +M+ +   PN  TY  +     +  +V+
Sbjct: 328 PDVYTYNSVISGLCKLGE-----VKEAVEFLDQMITRDCSPNTVTYNTLISTLCKENQVE 382

Query: 215 EARGLLQQMKAKGFVPD 231
           EA  L + + +KG +PD
Sbjct: 383 EATELARVLTSKGILPD 399



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 72/169 (42%), Gaps = 9/169 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E   +M T   + N V    +   L K+    EA +L   +  KG +PDV    ++I+  
Sbjct: 351 EFLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGL 410

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
                 + A+ +F  M + G  P+ +TY +LI  L +        L +A   L +M   G
Sbjct: 411 CLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGK-----LDEALNMLKQMELSG 465

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
              +  TY  + + F +A K+ EA  +  +M+  G V         LID
Sbjct: 466 CARSVITYNTLIDGFCKANKIREAEEIFDEMEVHG-VSRNSVTYNTLID 513



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 65/140 (46%), Gaps = 5/140 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K G    A+++   +  +G+ PDV  + +VI      G+ KEA+    +M+   
Sbjct: 301 LVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRD 360

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            +PN  TY  LI  L          + +A +    +  KG+ P+  T+ ++ +     + 
Sbjct: 361 CSPNTVTYNTLISTLCKENQ-----VEEATELARVLTSKGILPDVCTFNSLIQGLCLTRN 415

Query: 213 VDEARGLLQQMKAKGFVPDE 232
              A  L ++M++KG  PDE
Sbjct: 416 HRVAMELFEEMRSKGCEPDE 435



 Score = 45.8 bits (107), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 63/139 (45%), Gaps = 6/139 (4%)

Query: 97  LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS-GVAP 155
           L + G   +  ++   +K+ G          +IE+YA      E L V   M+   G+ P
Sbjct: 93  LGRSGSFDDMRKILEDMKNSGCEMGTSPFLILIESYAQFELQDEILGVVHWMIDDFGLKP 152

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           + + Y  ++  L    DGN   L +     M +   G++P+  T+  + +A  RA ++  
Sbjct: 153 DTHFYNRMLNLLV---DGNNLKLVEIAHAKMSV--WGIKPDVSTFNVLIKALCRAHQLRP 207

Query: 216 ARGLLQQMKAKGFVPDEKA 234
           A  +L+ M + G VPDEK 
Sbjct: 208 AILMLEDMPSYGLVPDEKT 226



 Score = 44.3 bits (103), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 75/171 (43%), Gaps = 14/171 (8%)

Query: 69  TDPRNLQ--EIFH-KMRTEGLTNNAVKMFD----ALSKDGLTHEALQLFAQIKDKGHMPD 121
            D  NL+  EI H KM   G+  + V  F+    AL +      A+ +   +   G +PD
Sbjct: 165 VDGNNLKLVEIAHAKMSVWGIKPD-VSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPD 223

Query: 122 VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDA 181
               T +++ Y   G    ALR+  +M+  G + +  +  V++ G     +G  +   DA
Sbjct: 224 EKTFTTIMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGF--CKEGRVE---DA 278

Query: 182 QKYLMEMVGK-GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             ++ EM  + G  P+  T+  +     +A  V  A  ++  M  +G+ PD
Sbjct: 279 LNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPD 329


>gi|242060656|ref|XP_002451617.1| hypothetical protein SORBIDRAFT_04g004710 [Sorghum bicolor]
 gi|241931448|gb|EES04593.1| hypothetical protein SORBIDRAFT_04g004710 [Sorghum bicolor]
          Length = 593

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 94/181 (51%), Gaps = 9/181 (4%)

Query: 71  PRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P +  ++F++M+T G   N      + +A +++GL  +A ++F +++  GH PDV A+ A
Sbjct: 286 PMSSLKVFNEMKTIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNA 345

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           ++EAY+ AG  + A  +F  M   G  P+  +Y +L+      A G A +  +A+    E
Sbjct: 346 LMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVD-----AYGRAGLHQEAEAAFQE 400

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGF 247
           +  +GMRP   ++  +  A  ++  V     ++ Q+   G  PD  A+  A+++  G+  
Sbjct: 401 LKQQGMRPTMKSHMLLLSAHAKSGNVARCEEVMAQLHKSGLRPDTFALN-AMLNAYGRAG 459

Query: 248 R 248
           R
Sbjct: 460 R 460



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 79/164 (48%), Gaps = 12/164 (7%)

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E++ +M+ E    N      M +   K      +L++F ++K  G  P++  +TA++ A+
Sbjct: 256 EVYQRMKKERCRTNTETYTLMINVYGKAKQPMSSLKVFNEMKTIGCKPNICTYTALVNAF 315

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA--DGNAKILGDAQKYLMEMVG 190
           A  G  ++A  VF  M  +G  P+ Y Y  L++  + A    G ++I       LME + 
Sbjct: 316 AREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFS-----LMEHM- 369

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
            G  P+  +Y  + +A+ RA    EA    Q++K +G  P  K+
Sbjct: 370 -GCEPDRASYNILVDAYGRAGLHQEAEAAFQELKQQGMRPTMKS 412



 Score = 53.5 bits (127), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 5/105 (4%)

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
           PD++ +  +I+AY    Q  +A  ++M +L +   P   TYA+L++        N+  L 
Sbjct: 163 PDIICYNLLIDAYGQKRQLNKAESIYMALLEAHCVPTEDTYALLLRAYC-----NSGQLH 217

Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            A+  + EM   G+ P A  Y A  +  ++A+  ++A  + Q+MK
Sbjct: 218 RAEGVISEMQKNGLPPTATVYNAYLDGLLKARCSEKAVEVYQRMK 262



 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 66/149 (44%), Gaps = 5/149 (3%)

Query: 71  PRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P+   EIF  M   G   +      + DA  + GL  EA   F ++K +G  P + +H  
Sbjct: 356 PQGASEIFSLMEHMGCEPDRASYNILVDAYGRAGLHQEAEAAFQELKQQGMRPTMKSHML 415

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK--GLAAAADGNAKILGDAQKYL 185
           ++ A+A +G       V  ++  SG+ P+ +    ++   G A   D   ++LG  ++  
Sbjct: 416 LLSAHAKSGNVARCEEVMAQLHKSGLRPDTFALNAMLNAYGRAGRLDDMERLLGAMERGG 475

Query: 186 MEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
            +  G G  P+  TY  +   + RA  +D
Sbjct: 476 DDDAGGGAAPDTSTYNVLVNVYGRAGYLD 504



 Score = 46.6 bits (109), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 65/169 (38%), Gaps = 30/169 (17%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DA  +    ++A  ++  + +   +P    +  ++ AY ++GQ   A  V   M  +G
Sbjct: 171 LIDAYGQKRQLNKAESIYMALLEAHCVPTEDTYALLLRAYCNSGQLHRAEGVISEMQKNG 230

Query: 153 VAPNAYTYAVLIKGLAAA------------------------------ADGNAKILGDAQ 182
           + P A  Y   + GL  A                                G AK    + 
Sbjct: 231 LPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTETYTLMINVYGKAKQPMSSL 290

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           K   EM   G +PN  TYTA+  AF R    ++A  + ++M+  G  PD
Sbjct: 291 KVFNEMKTIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPD 339


>gi|255574927|ref|XP_002528370.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532238|gb|EEF34042.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 712

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 75/158 (47%), Gaps = 9/158 (5%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F K    GL  N +    + + L K G   +A ++  ++  KG  P+V  HTA+I+    
Sbjct: 286 FKKWVQMGLNPNLINFSSLINGLCKIGSIKQAFEMLEEMVRKGWKPNVYTHTALIDGLCK 345

Query: 135 AGQGKEALRVFMRMLAS-GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            G  ++A R+F++++ S    PN YTY  +I G           L  A+  L+ M  +G+
Sbjct: 346 KGWTEKAFRLFLKLVRSDNYKPNVYTYTCMINGYCKEEK-----LNRAEMLLIRMKEQGL 400

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            PN  TYT + +   +A     A  L+  M  +GF P+
Sbjct: 401 VPNTNTYTCLIDGHCKAGNFGRAYELMDLMGKEGFTPN 438



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 71/159 (44%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+   M  EG T N      + D L K G   EA +L  +    G   D V +T +I  +
Sbjct: 425 ELMDLMGKEGFTPNIFTYNAIIDGLCKKGRFPEAYKLLRRGLKSGLHADKVTYTILISEF 484

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
                 K+AL +F RM   G+ P+ +TY VLI     A     K + +++K   E VG G
Sbjct: 485 CRQTDNKQALAIFSRMFKVGLQPDMHTYNVLI-----ATFCRQKKVEESEKLFEEAVGLG 539

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + P   TYT++   + R   +  A     +M+  G  PD
Sbjct: 540 LLPTKETYTSMICGYCRDGHISSAIKFFHKMRDYGCKPD 578



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 67/150 (44%), Gaps = 7/150 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M    S+ G  + A   F +    G  P+++  +++I      G  K+A  +   M+  G
Sbjct: 269 MISTFSEKGFVNRAFWYFKKWVQMGLNPNLINFSSLINGLCKIGSIKQAFEMLEEMVRKG 328

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV-GKGMRPNAGTYTAVFEAFVRAQ 211
             PN YT+  LI GL             A +  +++V     +PN  TYT +   + + +
Sbjct: 329 WKPNVYTHTALIDGLCKKGWTE-----KAFRLFLKLVRSDNYKPNVYTYTCMINGYCKEE 383

Query: 212 KVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           K++ A  LL +MK +G VP+       LID
Sbjct: 384 KLNRAEMLLIRMKEQGLVPNTNTYT-CLID 412



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 70/158 (44%), Gaps = 8/158 (5%)

Query: 80  KMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           +M+ +GL   TN    + D   K G    A +L   +  +G  P++  + A+I+     G
Sbjct: 394 RMKEQGLVPNTNTYTCLIDGHCKAGNFGRAYELMDLMGKEGFTPNIFTYNAIIDGLCKKG 453

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196
           +  EA ++  R L SG+  +  TY +LI       D        A      M   G++P+
Sbjct: 454 RFPEAYKLLRRGLKSGLHADKVTYTILISEFCRQTDNK-----QALAIFSRMFKVGLQPD 508

Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
             TY  +   F R +KV+E+  L ++    G +P ++ 
Sbjct: 509 MHTYNVLIATFCRQKKVEESEKLFEEAVGLGLLPTKET 546



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M +   K+   + A  L  ++K++G +P+   +T +I+ +  AG    A  +   M   G
Sbjct: 375 MINGYCKEEKLNRAEMLLIRMKEQGLVPNTNTYTCLIDGHCKAGNFGRAYELMDLMGKEG 434

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN +TY  +I GL            +A K L   +  G+  +  TYT +   F R   
Sbjct: 435 FTPNIFTYNAIIDGLCKKGR-----FPEAYKLLRRGLKSGLHADKVTYTILISEFCRQTD 489

Query: 213 VDEARGLLQQMKAKGFVPD 231
             +A  +  +M   G  PD
Sbjct: 490 NKQALAIFSRMFKVGLQPD 508


>gi|255540069|ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1151

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F +M + GL  N V    +   L K+G   EA+++   +KD+G  PDV  +  VI  +
Sbjct: 463 ELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGF 522

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             AG+ +E     + M+A G+ PN YTY   I G   A +  A     A++  +EM+  G
Sbjct: 523 CKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQA-----AERSFIEMLDSG 577

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + PN    T + + + +     +A    + M  +G +PD
Sbjct: 578 IAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPD 616



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 48/154 (31%), Positives = 74/154 (48%), Gaps = 8/154 (5%)

Query: 78  FHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F +M   G+  N V    + D   KDG T +A   F  + D+G +PDV  H+ +I   + 
Sbjct: 570 FIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSK 629

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            G+ +EA+ VF  +L  G+ P+ +TY  LI  L    D     L  A +   +M  KG+ 
Sbjct: 630 NGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGD-----LKAAFELHDDMCKKGIN 684

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
           PN  TY A+     +  ++ +AR L   +  KG 
Sbjct: 685 PNIVTYNALINGLCKLGEIAKARELFDGIPEKGL 718



 Score = 77.0 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 55/179 (30%), Positives = 83/179 (46%), Gaps = 26/179 (14%)

Query: 82  RTEGLTNNAVKMF---------------DALSKDGLTHEALQLFAQIKDKGHM----PDV 122
           R +G  N AV +F               ++LSKD L    ++LF ++  KG +    PDV
Sbjct: 174 RKKGFLNEAVSVFLGAKTNEFIVGLACCNSLSKDLLKGNRVELFWKVY-KGMLGAIVPDV 232

Query: 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQ 182
             +T +I AY   G+ +E   V   M   G  PN  TY+V+I GL  A D     + +A 
Sbjct: 233 YTYTNLINAYCRVGKVEEGKHVLFDMEEKGCIPNLVTYSVVIAGLCRAGD-----VDEAL 287

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           +    M  KG+ P+   Y  + + F R ++  E + +L +M   G  PD  A   ALI+
Sbjct: 288 ELKRSMANKGLLPDNYIYATLIDGFCRQKRSTEGKSMLDEMYTMGLKPDHVAYT-ALIN 345



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/162 (27%), Positives = 83/162 (51%), Gaps = 12/162 (7%)

Query: 76  EIFHKMRTEGLTNNAVKMFDALSKDGLTH-----EALQLFAQIKDKGHMPDVVAHTAVIE 130
           E+  +++ E LT NA  M  A+  +GL H      A +LF ++   G  P++V +T +++
Sbjct: 428 ELLIEIKKENLTANAY-MCGAIV-NGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVK 485

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
                G+ +EA+++   M   G++P+ + Y  +I G   A       + + + YL+EM+ 
Sbjct: 486 GLVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGK-----MEEGKSYLVEMIA 540

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           KG++PN  TY A    + RA ++  A     +M   G  P++
Sbjct: 541 KGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPND 582



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 47/162 (29%), Positives = 82/162 (50%), Gaps = 9/162 (5%)

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++FH M+  G+  ++     + D   K G T +AL LF  + ++G +    A  A+I+ +
Sbjct: 743 QLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEG-IASTPAFNALIDGF 801

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+  EA ++   M+ + + PN  TY +LI+       GN K   +A++  MEM  + 
Sbjct: 802 FKLGKLIEAYQLVEDMVDNHITPNHVTYTILIEYHCTV--GNIK---EAEQLFMEMQKRN 856

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
           + PN  TYT++   + R  +  E   L  +M A+G  PD+ A
Sbjct: 857 VMPNVLTYTSLLHGYNRIGRRSEMFSLFDEMVARGIKPDDLA 898



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 8/158 (5%)

Query: 75  QEIF-HKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +E+F  K++    T  A  +   L K G   +A  LF+++   G  PD+  +  +IE Y 
Sbjct: 361 EEMFARKIKLNTFTYYA--LIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYY 418

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
                ++A  + + +    +  NAY    ++ GL    D     L  A +   EM+  G+
Sbjct: 419 KVQNMEKAYELLIEIKKENLTANAYMCGAIVNGLCHCGD-----LTRANELFQEMISWGL 473

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +PN   YT + +  V+  + +EA  +L  MK +G  PD
Sbjct: 474 KPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPD 511



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 47/188 (25%), Positives = 80/188 (42%), Gaps = 32/188 (17%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+   M  +G+  N V    + + L K G   +A +LF  I +KG   + V ++ +I  Y
Sbjct: 673 ELHDDMCKKGINPNIVTYNALINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGY 732

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLI---------------------KGLAAAA 171
             +    EA ++F  M   GV P+++ Y  LI                     +G+A+  
Sbjct: 733 CKSANLTEAFQLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEGIASTP 792

Query: 172 DGNAKILG--------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
             NA I G        +A + + +MV   + PN  TYT + E       + EA  L  +M
Sbjct: 793 AFNALIDGFFKLGKLIEAYQLVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEM 852

Query: 224 KAKGFVPD 231
           + +  +P+
Sbjct: 853 QKRNVMPN 860



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/133 (30%), Positives = 63/133 (47%), Gaps = 5/133 (3%)

Query: 99  KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAY 158
           + G    A + F ++ D G  P+ V  T +I+ Y   G   +A   F  ML  GV P+  
Sbjct: 559 RAGEMQAAERSFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQ 618

Query: 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218
           T++VLI GL+     N K L +A     E++ KG+ P+  TYT++     +   +  A  
Sbjct: 619 THSVLIHGLSK----NGK-LQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFE 673

Query: 219 LLQQMKAKGFVPD 231
           L   M  KG  P+
Sbjct: 674 LHDDMCKKGINPN 686



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 67/160 (41%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +   M  +G   N V    +   L + G   EAL+L   + +KG +PD   +  +I+ 
Sbjct: 252 KHVLFDMEEKGCIPNLVTYSVVIAGLCRAGDVDEALELKRSMANKGLLPDNYIYATLIDG 311

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +    +  E   +   M   G+ P+   Y  LI G    +D     +G A +   EM  +
Sbjct: 312 FCRQKRSTEGKSMLDEMYTMGLKPDHVAYTALINGFVKQSD-----IGGAFQVKEEMFAR 366

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            ++ N  TY A+     +   +++A  L  +M   G  PD
Sbjct: 367 KIKLNTFTYYALIHGLCKIGDLEKAEDLFSEMTMMGIKPD 406



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 42/155 (27%), Positives = 74/155 (47%), Gaps = 11/155 (7%)

Query: 77  IFHKMRTEGLTNNAV--KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           +F  M  EG+ +      + D   K G   EA QL   + D    P+ V +T +IE + +
Sbjct: 779 LFLGMVEEGIASTPAFNALIDGFFKLGKLIEAYQLVEDMVDNHITPNHVTYTILIEYHCT 838

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM--EMVGKG 192
            G  KEA ++FM M    V PN  TY  L+ G         +I   ++ + +  EMV +G
Sbjct: 839 VGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGY-------NRIGRRSEMFSLFDEMVARG 891

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
           ++P+   ++ + +A ++     +A  L+  M ++G
Sbjct: 892 IKPDDLAWSVMVDAHLKEGNWIKALKLVDDMLSEG 926



 Score = 50.1 bits (118), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 44/174 (25%), Positives = 78/174 (44%), Gaps = 13/174 (7%)

Query: 74  LQE---IFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           LQE   +F ++  +GL  +      +   L K+G    A +L   +  KG  P++V + A
Sbjct: 633 LQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNA 692

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           +I      G+  +A  +F  +   G+A N+ TY+ +I G   +A+     L +A +    
Sbjct: 693 LINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSAN-----LTEAFQLFHG 747

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           M   G+ P++  Y A+ +   +A   ++A  L   M  +G          ALID
Sbjct: 748 MKLVGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEGIA--STPAFNALID 799


>gi|223635621|sp|Q940A6.2|PP325_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g19440, chloroplastic; Flags: Precursor
          Length = 838

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 57/185 (30%), Positives = 85/185 (45%), Gaps = 10/185 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           QE F +M ++ +  N V    +  A  + G    AL+L   +K KG  P+   +T++I+ 
Sbjct: 643 QEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKG 702

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
            +   + +EA  +F  M   G+ PN + Y  LI G      G    +   +  L EM  K
Sbjct: 703 MSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGY-----GKLGQMVKVECLLREMHSK 757

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVI 251
            + PN  TYT +   + R   V EA  LL +M+ KG VPD    KE +     QG  GV+
Sbjct: 758 NVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQG--GVL 815

Query: 252 NILFG 256
               G
Sbjct: 816 EAFKG 820



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/134 (32%), Positives = 71/134 (52%), Gaps = 5/134 (3%)

Query: 95  DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           +A  K G   EA++LF+++++ G  P+VV    VI+     G+  EA     +M+  G+ 
Sbjct: 281 NAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGME 340

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
           P   TY++L+KGL       AK +GDA   L EM  KG  PN   Y  + ++F+ A  ++
Sbjct: 341 PTLITYSILVKGLT-----RAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLN 395

Query: 215 EARGLLQQMKAKGF 228
           +A  +   M +KG 
Sbjct: 396 KAIEIKDLMVSKGL 409



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/116 (34%), Positives = 65/116 (56%), Gaps = 5/116 (4%)

Query: 116 KGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNA 175
           KG  PDV   T  I A+   G+ +EA+++F +M  +GVAPN  T+  +I GL     G  
Sbjct: 267 KGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGL-----GMC 321

Query: 176 KILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
               +A  +  +MV +GM P   TY+ + +   RA+++ +A  +L++M  KGF P+
Sbjct: 322 GRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPN 377



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 41/141 (29%), Positives = 70/141 (49%), Gaps = 6/141 (4%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA+Q +   K  G +PDV  ++ +I+    A + +E    F  M++  V PN   Y  LI
Sbjct: 606 EAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLI 665

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           +    +       L  A +   +M  KG+ PN+ TYT++ +      +V+EA+ L ++M+
Sbjct: 666 RAYCRSGR-----LSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMR 720

Query: 225 AKGFVPDEKAVKEALIDKRGQ 245
            +G  P+      ALID  G+
Sbjct: 721 MEGLEPNVFHYT-ALIDGYGK 740



 Score = 64.7 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L K G   +AL+L+ Q  +KG + D     A++     AG+  EA R+   +L  G
Sbjct: 489 LISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRG 548

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
              +  +Y  LI G         K L +A  +L EMV +G++P+  TY+ +        K
Sbjct: 549 CVMDRVSYNTLISGCCG-----KKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNK 603

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V+EA       K  G +PD
Sbjct: 604 VEEAIQFWDDCKRNGMLPD 622



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/175 (24%), Positives = 75/175 (42%), Gaps = 32/175 (18%)

Query: 87  TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFM 146
           T+NA  +   L + G   EA ++  +I  +G + D V++  +I       +  EA     
Sbjct: 520 TSNA--LLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLD 577

Query: 147 RMLASGVAPNAYTYAVLIKGL----------------------------AAAADG--NAK 176
            M+  G+ P+ YTY++LI GL                            +   DG   A+
Sbjct: 578 EMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAE 637

Query: 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              + Q++  EM+ K ++PN   Y  +  A+ R+ ++  A  L + MK KG  P+
Sbjct: 638 RTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPN 692



 Score = 47.4 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 67/159 (42%), Gaps = 30/159 (18%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +A  +  ++  KG  P+V+ +  +I+++  AG   +A+ +   M++ G++  + TY  LI
Sbjct: 361 DAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLI 420

Query: 165 KGLA--AAADGNAKILGD----------------------------AQKYLMEMVGKGMR 194
           KG      AD   ++L +                            A +++ EM+ + M 
Sbjct: 421 KGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMS 480

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK 233
           P  G  T +     +  K  +A  L  Q   KGFV D +
Sbjct: 481 PGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTR 519



 Score = 38.5 bits (88), Expect = 2.6,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 10/93 (10%)

Query: 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQK--YLMEMVGKGMRPNAG 198
           AL VF  +   G+ P+  T  +L+  L  A         + QK     ++V KG+ P+  
Sbjct: 223 ALDVFPVLANKGMFPSKTTCNILLTSLVRA--------NEFQKCCEAFDVVCKGVSPDVY 274

Query: 199 TYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +T    AF +  KV+EA  L  +M+  G  P+
Sbjct: 275 LFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPN 307


>gi|3080374|emb|CAA18631.1| putative protein [Arabidopsis thaliana]
 gi|7268739|emb|CAB78946.1| putative protein [Arabidopsis thaliana]
          Length = 814

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 57/185 (30%), Positives = 85/185 (45%), Gaps = 10/185 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           QE F +M ++ +  N V    +  A  + G    AL+L   +K KG  P+   +T++I+ 
Sbjct: 619 QEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKG 678

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
            +   + +EA  +F  M   G+ PN + Y  LI G      G    +   +  L EM  K
Sbjct: 679 MSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGY-----GKLGQMVKVECLLREMHSK 733

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVI 251
            + PN  TYT +   + R   V EA  LL +M+ KG VPD    KE +     QG  GV+
Sbjct: 734 NVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQG--GVL 791

Query: 252 NILFG 256
               G
Sbjct: 792 EAFKG 796



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/134 (32%), Positives = 71/134 (52%), Gaps = 5/134 (3%)

Query: 95  DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           +A  K G   EA++LF+++++ G  P+VV    VI+     G+  EA     +M+  G+ 
Sbjct: 257 NAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGME 316

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
           P   TY++L+KGL       AK +GDA   L EM  KG  PN   Y  + ++F+ A  ++
Sbjct: 317 PTLITYSILVKGLT-----RAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLN 371

Query: 215 EARGLLQQMKAKGF 228
           +A  +   M +KG 
Sbjct: 372 KAIEIKDLMVSKGL 385



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/116 (34%), Positives = 65/116 (56%), Gaps = 5/116 (4%)

Query: 116 KGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNA 175
           KG  PDV   T  I A+   G+ +EA+++F +M  +GVAPN  T+  +I GL     G  
Sbjct: 243 KGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGL-----GMC 297

Query: 176 KILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
               +A  +  +MV +GM P   TY+ + +   RA+++ +A  +L++M  KGF P+
Sbjct: 298 GRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPN 353



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 41/141 (29%), Positives = 70/141 (49%), Gaps = 6/141 (4%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA+Q +   K  G +PDV  ++ +I+    A + +E    F  M++  V PN   Y  LI
Sbjct: 582 EAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLI 641

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           +    +       L  A +   +M  KG+ PN+ TYT++ +      +V+EA+ L ++M+
Sbjct: 642 RAYCRSGR-----LSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMR 696

Query: 225 AKGFVPDEKAVKEALIDKRGQ 245
            +G  P+      ALID  G+
Sbjct: 697 MEGLEPNVFHYT-ALIDGYGK 716



 Score = 64.7 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L K G   +AL+L+ Q  +KG + D     A++     AG+  EA R+   +L  G
Sbjct: 465 LISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRG 524

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
              +  +Y  LI G         K L +A  +L EMV +G++P+  TY+ +        K
Sbjct: 525 CVMDRVSYNTLISGCCG-----KKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNK 579

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V+EA       K  G +PD
Sbjct: 580 VEEAIQFWDDCKRNGMLPD 598



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/175 (24%), Positives = 75/175 (42%), Gaps = 32/175 (18%)

Query: 87  TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFM 146
           T+NA  +   L + G   EA ++  +I  +G + D V++  +I       +  EA     
Sbjct: 496 TSNA--LLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLD 553

Query: 147 RMLASGVAPNAYTYAVLIKGL----------------------------AAAADG--NAK 176
            M+  G+ P+ YTY++LI GL                            +   DG   A+
Sbjct: 554 EMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAE 613

Query: 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              + Q++  EM+ K ++PN   Y  +  A+ R+ ++  A  L + MK KG  P+
Sbjct: 614 RTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPN 668



 Score = 47.4 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 67/159 (42%), Gaps = 30/159 (18%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +A  +  ++  KG  P+V+ +  +I+++  AG   +A+ +   M++ G++  + TY  LI
Sbjct: 337 DAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLI 396

Query: 165 KGLA--AAADGNAKILGD----------------------------AQKYLMEMVGKGMR 194
           KG      AD   ++L +                            A +++ EM+ + M 
Sbjct: 397 KGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMS 456

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK 233
           P  G  T +     +  K  +A  L  Q   KGFV D +
Sbjct: 457 PGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTR 495



 Score = 38.5 bits (88), Expect = 2.6,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 10/93 (10%)

Query: 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQK--YLMEMVGKGMRPNAG 198
           AL VF  +   G+ P+  T  +L+  L  A         + QK     ++V KG+ P+  
Sbjct: 199 ALDVFPVLANKGMFPSKTTCNILLTSLVRA--------NEFQKCCEAFDVVCKGVSPDVY 250

Query: 199 TYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +T    AF +  KV+EA  L  +M+  G  P+
Sbjct: 251 LFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPN 283


>gi|18415314|ref|NP_567587.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|334186696|ref|NP_001190771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|15810161|gb|AAL07224.1| unknown protein [Arabidopsis thaliana]
 gi|332658782|gb|AEE84182.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332658783|gb|AEE84183.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 57/185 (30%), Positives = 85/185 (45%), Gaps = 10/185 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           QE F +M ++ +  N V    +  A  + G    AL+L   +K KG  P+   +T++I+ 
Sbjct: 630 QEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKG 689

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
            +   + +EA  +F  M   G+ PN + Y  LI G      G    +   +  L EM  K
Sbjct: 690 MSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGY-----GKLGQMVKVECLLREMHSK 744

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVI 251
            + PN  TYT +   + R   V EA  LL +M+ KG VPD    KE +     QG  GV+
Sbjct: 745 NVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQG--GVL 802

Query: 252 NILFG 256
               G
Sbjct: 803 EAFKG 807



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 44/134 (32%), Positives = 71/134 (52%), Gaps = 5/134 (3%)

Query: 95  DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           +A  K G   EA++LF+++++ G  P+VV    VI+     G+  EA     +M+  G+ 
Sbjct: 268 NAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGME 327

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
           P   TY++L+KGL       AK +GDA   L EM  KG  PN   Y  + ++F+ A  ++
Sbjct: 328 PTLITYSILVKGLT-----RAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLN 382

Query: 215 EARGLLQQMKAKGF 228
           +A  +   M +KG 
Sbjct: 383 KAIEIKDLMVSKGL 396



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/116 (34%), Positives = 65/116 (56%), Gaps = 5/116 (4%)

Query: 116 KGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNA 175
           KG  PDV   T  I A+   G+ +EA+++F +M  +GVAPN  T+  +I GL     G  
Sbjct: 254 KGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGL-----GMC 308

Query: 176 KILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
               +A  +  +MV +GM P   TY+ + +   RA+++ +A  +L++M  KGF P+
Sbjct: 309 GRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPN 364



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 41/141 (29%), Positives = 70/141 (49%), Gaps = 6/141 (4%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA+Q +   K  G +PDV  ++ +I+    A + +E    F  M++  V PN   Y  LI
Sbjct: 593 EAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLI 652

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           +    +       L  A +   +M  KG+ PN+ TYT++ +      +V+EA+ L ++M+
Sbjct: 653 RAYCRSGR-----LSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMR 707

Query: 225 AKGFVPDEKAVKEALIDKRGQ 245
            +G  P+      ALID  G+
Sbjct: 708 MEGLEPNVFHYT-ALIDGYGK 727



 Score = 64.7 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L K G   +AL+L+ Q  +KG + D     A++     AG+  EA R+   +L  G
Sbjct: 476 LISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRG 535

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
              +  +Y  LI G         K L +A  +L EMV +G++P+  TY+ +        K
Sbjct: 536 CVMDRVSYNTLISGCCG-----KKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNK 590

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V+EA       K  G +PD
Sbjct: 591 VEEAIQFWDDCKRNGMLPD 609



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/175 (24%), Positives = 75/175 (42%), Gaps = 32/175 (18%)

Query: 87  TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFM 146
           T+NA  +   L + G   EA ++  +I  +G + D V++  +I       +  EA     
Sbjct: 507 TSNA--LLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLD 564

Query: 147 RMLASGVAPNAYTYAVLIKGL----------------------------AAAADG--NAK 176
            M+  G+ P+ YTY++LI GL                            +   DG   A+
Sbjct: 565 EMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAE 624

Query: 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              + Q++  EM+ K ++PN   Y  +  A+ R+ ++  A  L + MK KG  P+
Sbjct: 625 RTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPN 679



 Score = 47.4 bits (111), Expect = 0.006,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 67/159 (42%), Gaps = 30/159 (18%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +A  +  ++  KG  P+V+ +  +I+++  AG   +A+ +   M++ G++  + TY  LI
Sbjct: 348 DAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLI 407

Query: 165 KGLA--AAADGNAKILGD----------------------------AQKYLMEMVGKGMR 194
           KG      AD   ++L +                            A +++ EM+ + M 
Sbjct: 408 KGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMS 467

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK 233
           P  G  T +     +  K  +A  L  Q   KGFV D +
Sbjct: 468 PGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTR 506



 Score = 38.5 bits (88), Expect = 2.6,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 10/93 (10%)

Query: 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQK--YLMEMVGKGMRPNAG 198
           AL VF  +   G+ P+  T  +L+  L  A         + QK     ++V KG+ P+  
Sbjct: 210 ALDVFPVLANKGMFPSKTTCNILLTSLVRA--------NEFQKCCEAFDVVCKGVSPDVY 261

Query: 199 TYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +T    AF +  KV+EA  L  +M+  G  P+
Sbjct: 262 LFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPN 294


>gi|297801450|ref|XP_002868609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314445|gb|EFH44868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 526

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 87/182 (47%), Gaps = 10/182 (5%)

Query: 50  KSKLPPPYDPFKKVVDEEPTDPRNL--QEIFHKMRTEGLTNNA---VKMFDALSKDGLTH 104
           K K+ P    F  ++D    + + L  +E++++M    +  N      + + L  +G   
Sbjct: 239 KRKIKPDVITFNALIDAFVKEGKLLDAKELYNEMIQMSIAPNIFTYTSLINGLCMEGRLD 298

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA Q+F  ++ KG  PDVVA+T++I  +    + ++A+++F  M   G+  N  TY  LI
Sbjct: 299 EARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVEDAMKIFYEMSQKGLTGNTITYTTLI 358

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           +G       N      AQ+    MV +G+ PN  TY  +        KV++A  + + M+
Sbjct: 359 QGFGLVGKPNV-----AQEVFGHMVSRGVPPNIRTYNVLLHCLCYNGKVNKALMIFEDMQ 413

Query: 225 AK 226
            +
Sbjct: 414 KR 415



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 71/139 (51%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D+L K+G    AL LF Q+++ G  PDVV +T+++    ++G+ ++A  +   M+   
Sbjct: 182 IIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYTSLVNGLCNSGRWRDADLLLRGMMKRK 241

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+  T+  LI             L DA++   EM+   + PN  TYT++        +
Sbjct: 242 IKPDVITFNALIDAFVKEGK-----LLDAKELYNEMIQMSIAPNIFTYTSLINGLCMEGR 296

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +DEAR +   M+ KG  PD
Sbjct: 297 LDEARQMFYLMETKGCFPD 315



 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 7/152 (4%)

Query: 80  KMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGK 139
           K++ + +T NA  + DA  K+G   +A +L+ ++      P++  +T++I      G+  
Sbjct: 241 KIKPDVITFNA--LIDAFVKEGKLLDAKELYNEMIQMSIAPNIFTYTSLINGLCMEGRLD 298

Query: 140 EALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGT 199
           EA ++F  M   G  P+   Y  LI G         K + DA K   EM  KG+  N  T
Sbjct: 299 EARQMFYLMETKGCFPDVVAYTSLINGFCKC-----KKVEDAMKIFYEMSQKGLTGNTIT 353

Query: 200 YTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           YT + + F    K + A+ +   M ++G  P+
Sbjct: 354 YTTLIQGFGLVGKPNVAQEVFGHMVSRGVPPN 385



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/188 (25%), Positives = 77/188 (40%), Gaps = 36/188 (19%)

Query: 76  EIFHKMRTEGLTNNAVKMFDALSKDGLT---HEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +IF++M  +GLT N +     +   GL    + A ++F  +  +G  P++  +  ++   
Sbjct: 337 KIFYEMSQKGLTGNTITYTTLIQGFGLVGKPNVAQEVFGHMVSRGVPPNIRTYNVLLHCL 396

Query: 133 ASAGQGKEALRVFMRML---ASGVAPNAYTYAVLIKGLA--AAADGNAKILGDAQKYLME 187
              G+  +AL +F  M      GV PN  TY VL+ GL      +    + GD QK  M+
Sbjct: 397 CYNGKVNKALMIFEDMQKREIDGVPPNIRTYNVLLHGLCYNGKLEKALMVFGDMQKRDMD 456

Query: 188 ----------------------------MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGL 219
                                       +  KG++PN  TYT +     R   + EA  L
Sbjct: 457 IGIITYTIIIQGMCKAGKVKDALNLFCSLPSKGVKPNVVTYTTMISGLFREGLMLEAHVL 516

Query: 220 LQQMKAKG 227
            ++MK  G
Sbjct: 517 FRKMKEDG 524



 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 27/128 (21%), Positives = 59/128 (46%), Gaps = 5/128 (3%)

Query: 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
           +EAL LF+ + +   +P ++  T ++   A   +    + +   +   GV+ + YT  +L
Sbjct: 53  NEALDLFSHMVESRPLPSIIDFTRLLNVIAKMKKFDVVINLCKHLQIMGVSNDLYTCNLL 112

Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           +     ++         A  +L +++  G  P+  T+T++   F    +++EA  ++ QM
Sbjct: 113 MNCFCQSSQPCL-----ASSFLGKLMKLGFEPDIFTFTSLINGFCLGNRIEEAMSMVNQM 167

Query: 224 KAKGFVPD 231
              G  PD
Sbjct: 168 VEMGIKPD 175



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 78/204 (38%), Gaps = 26/204 (12%)

Query: 58  DPFKKVVDEEP----TDPRNLQEIFHKMRTEGLTNNAVKMFDAL--SKDGLTHEAL-QLF 110
           D F  +V+  P     D   L  +  KM+   +  N  K    +  S D  T   L   F
Sbjct: 57  DLFSHMVESRPLPSIIDFTRLLNVIAKMKKFDVVINLCKHLQIMGVSNDLYTCNLLMNCF 116

Query: 111 AQ-------------IKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA 157
            Q             +   G  PD+   T++I  +    + +EA+ +  +M+  G+ P+ 
Sbjct: 117 CQSSQPCLASSFLGKLMKLGFEPDIFTFTSLINGFCLGNRIEEAMSMVNQMVEMGIKPDV 176

Query: 158 YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
             Y  +I  L          + +A     +M   G+RP+   YT++      + +  +A 
Sbjct: 177 VIYTTIIDSLCKNGH-----VDNALSLFNQMENYGIRPDVVMYTSLVNGLCNSGRWRDAD 231

Query: 218 GLLQQMKAKGFVPDEKAVKEALID 241
            LL+ M  +   PD      ALID
Sbjct: 232 LLLRGMMKRKIKPDVITF-NALID 254



 Score = 39.7 bits (91), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 22/122 (18%)

Query: 68  PTDPRNLQEIFHKMRTEGLTNNAVKMFDALSK----------------------DGLTHE 105
           P + R    + H +   G  N A+ +F+ + K                      +G   +
Sbjct: 383 PPNIRTYNVLLHCLCYNGKVNKALMIFEDMQKREIDGVPPNIRTYNVLLHGLCYNGKLEK 442

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           AL +F  ++ +     ++ +T +I+    AG+ K+AL +F  + + GV PN  TY  +I 
Sbjct: 443 ALMVFGDMQKRDMDIGIITYTIIIQGMCKAGKVKDALNLFCSLPSKGVKPNVVTYTTMIS 502

Query: 166 GL 167
           GL
Sbjct: 503 GL 504



 Score = 37.4 bits (85), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 44/113 (38%), Gaps = 19/113 (16%)

Query: 61  KKVVDEEPTDPRNLQEIFHKMRTEGLTNNAVKMF-------------------DALSKDG 101
           K+ +D  P + R    + H +   G    A+ +F                     + K G
Sbjct: 414 KREIDGVPPNIRTYNVLLHGLCYNGKLEKALMVFGDMQKRDMDIGIITYTIIIQGMCKAG 473

Query: 102 LTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
              +AL LF  +  KG  P+VV +T +I      G   EA  +F +M   GV+
Sbjct: 474 KVKDALNLFCSLPSKGVKPNVVTYTTMISGLFREGLMLEAHVLFRKMKEDGVS 526


>gi|449530353|ref|XP_004172160.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like, partial [Cucumis sativus]
          Length = 312

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 82/160 (51%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           Q IF +MRT+    N      + +AL+++GL  +A ++F Q+++ G+ PDV A+ A++E+
Sbjct: 16  QNIFDEMRTQRCKPNICTFTALVNALAREGLCEKAEEIFEQMQEAGYEPDVYAYNALMES 75

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y+ AG    A  +F  M   G  P+  +Y +++      A G A +  DAQ    EM   
Sbjct: 76  YSRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVD-----AYGRAGLHEDAQAVFEEMKRI 130

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G+ P   ++  +  A+  A  V +   ++ QM   G  PD
Sbjct: 131 GITPTMKSHMLLLSAYSSAGNVAKCEDIIGQMHKSGLKPD 170



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 69/134 (51%), Gaps = 9/134 (6%)

Query: 103 THEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAV 162
           +H A  +F +++ +   P++   TA++ A A  G  ++A  +F +M  +G  P+ Y Y  
Sbjct: 12  SHMAQNIFDEMRTQRCKPNICTFTALVNALAREGLCEKAEEIFEQMQEAGYEPDVYAYNA 71

Query: 163 LIKGLAAAA--DGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
           L++  + A    G A+I       LM+ +  G  P+  +Y  + +A+ RA   ++A+ + 
Sbjct: 72  LMESYSRAGFPYGAAEIFS-----LMQHM--GCEPDRASYNIMVDAYGRAGLHEDAQAVF 124

Query: 221 QQMKAKGFVPDEKA 234
           ++MK  G  P  K+
Sbjct: 125 EEMKRIGITPTMKS 138



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 67/164 (40%), Gaps = 8/164 (4%)

Query: 71  PRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P    EIF  M+  G   +      M DA  + GL  +A  +F ++K  G  P + +H  
Sbjct: 82  PYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEEMKRIGITPTMKSHML 141

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           ++ AY+SAG   +   +  +M  SG+ P+ +    ++        G     G  +     
Sbjct: 142 LLSAYSSAGNVAKCEDIIGQMHKSGLKPDTFVMNSMLN-----LYGRLGQFGKMEDLFST 196

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           M     R +  TY  +   + RA  V+    L Q + AK   PD
Sbjct: 197 MQKGPCRADISTYNILINVYGRAGFVERMEELFQLLPAKNLEPD 240


>gi|115445137|ref|NP_001046348.1| Os02g0226900 [Oryza sativa Japonica Group]
 gi|49388538|dbj|BAD25660.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|49388672|dbj|BAD25856.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113535879|dbj|BAF08262.1| Os02g0226900 [Oryza sativa Japonica Group]
          Length = 637

 Score = 81.3 bits (199), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 76/161 (47%), Gaps = 8/161 (4%)

Query: 74  LQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           +  +F KM+T G+  +      M  +  + GL  +A +LF  ++     PDVV + ++I 
Sbjct: 447 ISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLIN 506

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
                G   EA  +F  M   G  P+ +TY++LI+       G +  +  A     EM+ 
Sbjct: 507 CLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECF-----GKSNKVEMACSLFDEMIS 561

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +G  PN  TY  + +   R  K +EA  L + MK +G +PD
Sbjct: 562 EGCTPNIVTYNILLDCLERRGKTEEAHKLYETMKQQGLIPD 602



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 73/159 (45%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++ H M  +G+  +      +F AL K         LF ++K  G +PDV  +  +I +Y
Sbjct: 414 DLLHMMPEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSY 473

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G   +A  +F  M AS   P+  TY  LI  L    D     L +A     EM  KG
Sbjct: 474 GRVGLVDKASELFEVMEASSCKPDVVTYNSLINCLGKHGD-----LDEAHMLFKEMQEKG 528

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             P+  TY+ + E F ++ KV+ A  L  +M ++G  P+
Sbjct: 529 YDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPN 567



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 74/152 (48%), Gaps = 7/152 (4%)

Query: 81  MRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140
           +R  G T   +      S++    +  Q++ +++ KG+  D+ A+  +++A A AG   +
Sbjct: 182 LRLSGYTYKCIVQAHLRSRE--VSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQ 239

Query: 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTY 200
           A +VF  M      P+AYTY +LI+ ++  A   +K L     +  EMV KG   N   +
Sbjct: 240 AFQVFEDMKQKHCVPDAYTYTILIR-MSGKAGRTSKFLS----FFDEMVSKGCVLNLIAF 294

Query: 201 TAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
             + EA  + + VD+   +L +M      P++
Sbjct: 295 NTIIEALGKNKMVDKVIFVLSKMVENDCQPNQ 326



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 8/145 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F  M       + V    + + L K G   EA  LF ++++KG+ PDV  ++ +IE +
Sbjct: 484 ELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECF 543

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             + + + A  +F  M++ G  PN  TY +L+  L            +A K    M  +G
Sbjct: 544 GKSNKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTE-----EAHKLYETMKQQG 598

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEAR 217
           + P++ TY+ +     R+Q+    R
Sbjct: 599 LIPDSITYSILERLESRSQRTVRIR 623



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 5/141 (3%)

Query: 91  VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           V M + L     T EA+ L   + +KG + DV  +  V  A     Q      +F +M  
Sbjct: 397 VSMLEVLCNAEKTLEAIDLLHMMPEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKT 456

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
           +G+ P+ +TY ++I     ++ G   ++  A +    M     +P+  TY ++     + 
Sbjct: 457 NGIIPDVFTYNIMI-----SSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLINCLGKH 511

Query: 211 QKVDEARGLLQQMKAKGFVPD 231
             +DEA  L ++M+ KG+ PD
Sbjct: 512 GDLDEAHMLFKEMQEKGYDPD 532



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 63/133 (47%), Gaps = 8/133 (6%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +++ +MR +G   +      + DAL+K G+  +A Q+F  +K K  +PD   +T +I   
Sbjct: 207 QVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFEDMKQKHCVPDAYTYTILIRMS 266

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             AG+  + L  F  M++ G   N   +  +I+ L     G  K++      L +MV   
Sbjct: 267 GKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEAL-----GKNKMVDKVIFVLSKMVEND 321

Query: 193 MRPNAGTYTAVFE 205
            +PN  TY+   +
Sbjct: 322 CQPNQFTYSITLD 334


>gi|115482788|ref|NP_001064987.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|22165069|gb|AAM93686.1| putative leaf protein [Oryza sativa Japonica Group]
 gi|31432904|gb|AAP54480.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|113639596|dbj|BAF26901.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|125575306|gb|EAZ16590.1| hypothetical protein OsJ_32064 [Oryza sativa Japonica Group]
          Length = 454

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 89/195 (45%), Gaps = 47/195 (24%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F KMR +GLT NAV    + D L K G   +A+  F Q+ DKG  P+VV +T++I A  
Sbjct: 204 VFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQMIDKGLTPNVVVYTSLIHALC 263

Query: 134 SAGQGKEALRVFMRMLASGVAPN-----------------------------------AY 158
           +  + ++A  +   +L  G+ PN                                     
Sbjct: 264 TYDKWEKAEELIFEILDQGINPNIVFFNTILDSLCKEGRVIESKKLFDLLGHIGVNPDVI 323

Query: 159 TYAVLIKG--LAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
           TY+ LI G  LA   DG       A K L  MV  G++P++ TY+ +   + +  ++++A
Sbjct: 324 TYSTLIDGYCLAGKMDG-------AMKLLTGMVSVGLKPDSVTYSTLINGYCKINRMEDA 376

Query: 217 RGLLQQMKAKGFVPD 231
             L ++M++ G  PD
Sbjct: 377 LALFKEMESNGVNPD 391



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 79/158 (50%), Gaps = 12/158 (7%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+  ++  +G+  N V    + D+L K+G   E+ +LF  +   G  PDV+ ++ +I+ 
Sbjct: 272 EELIFEILDQGINPNIVFFNTILDSLCKEGRVIESKKLFDLLGHIGVNPDVITYSTLIDG 331

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKI--LGDAQKYLMEMV 189
           Y  AG+   A+++   M++ G+ P++ TY+ LI       +G  KI  + DA     EM 
Sbjct: 332 YCLAGKMDGAMKLLTGMVSVGLKPDSVTYSTLI-------NGYCKINRMEDALALFKEME 384

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
             G+ P+  TY  +     R ++   A+ L  ++   G
Sbjct: 385 SNGVNPDIITYNIILHGLFRTRRTAAAKELYARITESG 422



 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 79/193 (40%), Gaps = 43/193 (22%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           IF KM ++G+  + V    + D L K+G   EA ++F  +  +G  PD+  +  ++  YA
Sbjct: 99  IFRKMCSDGIEPDVVTYNSLMDYLCKNGKCTEARKIFDSMVKRGLKPDITTYGTLLHGYA 158

Query: 134 SAG-----------------------------------QGKEALRVFMRMLASGVAPNAY 158
           S G                                   +  E + VF +M   G+ PNA 
Sbjct: 159 SKGALVEMHDLLALMVQNGMQLDHHVFNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAV 218

Query: 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218
            Y  +I GL          L DA     +M+ KG+ PN   YT++  A     K ++A  
Sbjct: 219 NYRTVIDGLCKLGR-----LDDAMLNFEQMIDKGLTPNVVVYTSLIHALCTYDKWEKAEE 273

Query: 219 LLQQMKAKGFVPD 231
           L+ ++  +G  P+
Sbjct: 274 LIFEILDQGINPN 286



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 66/134 (49%), Gaps = 5/134 (3%)

Query: 98  SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA 157
              G + +A+ +F ++   G  PDVV + ++++     G+  EA ++F  M+  G+ P+ 
Sbjct: 88  CSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYLCKNGKCTEARKIFDSMVKRGLKPDI 147

Query: 158 YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
            TY  L+ G A+        L +    L  MV  GM+ +   +  +  A+ + +KVDE  
Sbjct: 148 TTYGTLLHGYASKG-----ALVEMHDLLALMVQNGMQLDHHVFNILICAYTKQEKVDEVV 202

Query: 218 GLLQQMKAKGFVPD 231
            +  +M+ +G  P+
Sbjct: 203 LVFSKMRQQGLTPN 216



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 84/188 (44%), Gaps = 18/188 (9%)

Query: 52  KLPPPYDPFKKVVD----EEPTDPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTH 104
           + PP    +  ++D    E   D   +   +H+M    ++ +AV    +  ALSK     
Sbjct: 6   RCPPDVVSYNTIIDGLFKEGDVDKAYIT--YHEMLDRRVSPDAVTYNSIIAALSKAQAMD 63

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
            A+++   +     MP+   + +++  Y S+GQ ++A+ +F +M + G+ P+  TY  L+
Sbjct: 64  RAMEVLTVMV----MPNCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLM 119

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
             L      N K   +A+K    MV +G++P+  TY  +   +     + E   LL  M 
Sbjct: 120 DYLCK----NGK-CTEARKIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMV 174

Query: 225 AKGFVPDE 232
             G   D 
Sbjct: 175 QNGMQLDH 182


>gi|357485461|ref|XP_003613018.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514353|gb|AES95976.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 894

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 57/189 (30%), Positives = 84/189 (44%), Gaps = 33/189 (17%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F  M  EG   N V    +     + G   EAL+LF Q+K+ G  PDV  +T ++ A+
Sbjct: 246 KVFEIMPQEGCLRNEVSYTNLIHGFCEVGKIDEALELFFQMKEDGCFPDVPTYTVLVAAF 305

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLI---------------------KGLAAAA 171
              G+  EAL+ F  M+ +G+ PN YTY VLI                     KGL ++ 
Sbjct: 306 CEVGKETEALKFFEEMVENGIEPNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSV 365

Query: 172 -------DGNAK--ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
                  DG  K  ++ DA   L  M    + PN+ TY  +   F R + +D A  LL +
Sbjct: 366 VPFNALIDGYCKRGMMEDAICVLDSMKLNKVCPNSRTYNELICGFCRKKSMDRAMALLNK 425

Query: 223 MKAKGFVPD 231
           M      P+
Sbjct: 426 MYENKLSPN 434



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 45/143 (31%), Positives = 69/143 (48%), Gaps = 9/143 (6%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +A ++F  +  +G + + V++T +I  +   G+  EAL +F +M   G  P+  TY VL+
Sbjct: 243 DAYKVFEIMPQEGCLRNEVSYTNLIHGFCEVGKIDEALELFFQMKEDGCFPDVPTYTVLV 302

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
                          +A K+  EMV  G+ PN  TYT + + F +  K+DE   +L  M 
Sbjct: 303 AAFCEVGKET-----EALKFFEEMVENGIEPNVYTYTVLIDYFCKVGKMDEGMEMLSTML 357

Query: 225 AKGFVPDEKAVKEALID---KRG 244
            KG V        ALID   KRG
Sbjct: 358 EKGLVSSVVPFN-ALIDGYCKRG 379



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 46/138 (33%), Positives = 71/138 (51%), Gaps = 7/138 (5%)

Query: 95  DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           D L K G   +A Q+F  +K+K    +   +TA+I+ Y  A +  +A  +F RML  G  
Sbjct: 478 DCLCKMGKVEQAHQVFESLKEKHAEANEFLYTALIDGYCKAEKFSDAHLLFKRMLFEGCF 537

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK-GMRPNAGTYTAVFEAFVRAQKV 213
           PN+ T+ VL+ GL    +G  +   DA   L++++GK   +P   TYT + E  +R    
Sbjct: 538 PNSITFNVLLDGL--RKEGKVE---DAMS-LVDVMGKFDAKPTVHTYTILIEEILRESDF 591

Query: 214 DEARGLLQQMKAKGFVPD 231
           D A   L QM + G  P+
Sbjct: 592 DRANMFLDQMISSGCQPN 609



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 46/161 (28%), Positives = 72/161 (44%), Gaps = 8/161 (4%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           + F +M   G+  N      + D   K G   E +++ + + +KG +  VV   A+I+ Y
Sbjct: 316 KFFEEMVENGIEPNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALIDGY 375

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G  ++A+ V   M  + V PN+ TY  LI G         K +  A   L +M    
Sbjct: 376 CKRGMMEDAICVLDSMKLNKVCPNSRTYNELICGFC-----RKKSMDRAMALLNKMYENK 430

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK 233
           + PN  TY  +     +A+ VD A  L   M   GFVPD++
Sbjct: 431 LSPNLVTYNTLIHGLCKARVVDSAWRLHHLMIKDGFVPDQR 471



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/140 (30%), Positives = 64/140 (45%), Gaps = 5/140 (3%)

Query: 92  KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
           ++F  LS+ GL  E   LF  + + G  P++++   ++ A+   G    A   F  ++  
Sbjct: 160 RLFMVLSRFGLIDELNCLFKDMLNDGVEPNLISFNTMVNAHCKIGNVVVAKAYFCGLMKF 219

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           G   +++TY  LI G     +     LGDA K    M  +G   N  +YT +   F    
Sbjct: 220 GFCCDSFTYTSLILGYCKIHE-----LGDAYKVFEIMPQEGCLRNEVSYTNLIHGFCEVG 274

Query: 212 KVDEARGLLQQMKAKGFVPD 231
           K+DEA  L  QMK  G  PD
Sbjct: 275 KIDEALELFFQMKEDGCFPD 294



 Score = 60.5 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 82/196 (41%), Gaps = 26/196 (13%)

Query: 61  KKVVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKG 117
           ++++ E   D  N+     +M + G   N V       A  + G   EA ++  +IK++G
Sbjct: 583 EEILRESDFDRANM--FLDQMISSGCQPNVVTYTAFIKAYCRQGRLLEAEEMVVKIKEEG 640

Query: 118 HMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL---------- 167
            + D   +  ++ AY   GQ   A  V +RM  +G  P+  TY++L+K L          
Sbjct: 641 ILLDSFIYDVLVNAYGCIGQLDSAFGVLIRMFDTGCEPSRQTYSILLKHLIFEKYNKEGM 700

Query: 168 --------AAAADGNAKILGDAQKYLM---EMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
                    +  + N   + D +   M   +MV +G  PN  TY+ + +   + + +  A
Sbjct: 701 GLDLNSTNISVDNANIWKIADFEIITMLFEKMVEQGCVPNVNTYSKLIKGLCKVEHLSLA 760

Query: 217 RGLLQQMKAKGFVPDE 232
             L   MK  G  P E
Sbjct: 761 FRLFNHMKESGISPSE 776



 Score = 47.0 bits (110), Expect = 0.008,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 70/160 (43%), Gaps = 8/160 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M  EG   N++    + D L K+G   +A+ L   +      P V  +T +IE   
Sbjct: 527 LFKRMLFEGCFPNSITFNVLLDGLRKEGKVEDAMSLVDVMGKFDAKPTVHTYTILIEEIL 586

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
                  A     +M++SG  PN  TY   IK            L +A++ ++++  +G+
Sbjct: 587 RESDFDRANMFLDQMISSGCQPNVVTYTAFIKAYCRQGR-----LLEAEEMVVKIKEEGI 641

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK 233
             ++  Y  +  A+    ++D A G+L +M   G  P  +
Sbjct: 642 LLDSFIYDVLVNAYGCIGQLDSAFGVLIRMFDTGCEPSRQ 681



 Score = 45.4 bits (106), Expect = 0.025,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 62/150 (41%), Gaps = 8/150 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           + +KM    L+ N V    +   L K  +   A +L   +   G +PD     A I+   
Sbjct: 422 LLNKMYENKLSPNLVTYNTLIHGLCKARVVDSAWRLHHLMIKDGFVPDQRTFCAFIDCLC 481

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G+ ++A +VF  +       N + Y  LI G        A+   DA      M+ +G 
Sbjct: 482 KMGKVEQAHQVFESLKEKHAEANEFLYTALIDGYC-----KAEKFSDAHLLFKRMLFEGC 536

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
            PN+ T+  + +   +  KV++A  L+  M
Sbjct: 537 FPNSITFNVLLDGLRKEGKVEDAMSLVDVM 566



 Score = 44.7 bits (104), Expect = 0.034,   Method: Composition-based stats.
 Identities = 40/158 (25%), Positives = 67/158 (42%), Gaps = 24/158 (15%)

Query: 81  MRTEGLTNNAVKMFDALSK-DG---------LTHEALQ---------LFAQIKDKGHMPD 121
           +R EG   +A+ + D + K D          L  E L+            Q+   G  P+
Sbjct: 550 LRKEGKVEDAMSLVDVMGKFDAKPTVHTYTILIEEILRESDFDRANMFLDQMISSGCQPN 609

Query: 122 VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDA 181
           VV +TA I+AY   G+  EA  + +++   G+  +++ Y VL+      A G    L  A
Sbjct: 610 VVTYTAFIKAYCRQGRLLEAEEMVVKIKEEGILLDSFIYDVLVN-----AYGCIGQLDSA 664

Query: 182 QKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGL 219
              L+ M   G  P+  TY+ + +  +  +   E  GL
Sbjct: 665 FGVLIRMFDTGCEPSRQTYSILLKHLIFEKYNKEGMGL 702



 Score = 42.4 bits (98), Expect = 0.19,   Method: Composition-based stats.
 Identities = 37/154 (24%), Positives = 64/154 (41%), Gaps = 8/154 (5%)

Query: 77  IFHKMRTEGLT---NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F KM  +G     N   K+   L K      A +LF  +K+ G  P    H +++ +  
Sbjct: 728 LFEKMVEQGCVPNVNTYSKLIKGLCKVEHLSLAFRLFNHMKESGISPSENIHNSLLSSCC 787

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G  +EALR+   M+      +  +Y +L+ GL     GN +    A++    ++  G 
Sbjct: 788 KLGMHEEALRLLDSMMEYNHLAHLESYKLLVCGL--FEQGNQE---KAEEIFRSLLSCGY 842

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
             +   +  + +  VR   VDE   L   M+  G
Sbjct: 843 NYDEVVWKVLLDGLVRKGYVDECSQLRDIMEKTG 876



 Score = 42.0 bits (97), Expect = 0.22,   Method: Composition-based stats.
 Identities = 41/209 (19%), Positives = 78/209 (37%), Gaps = 43/209 (20%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+   M  +GL ++ V    + D   K G+  +A+ +   +K     P+   +  +I  +
Sbjct: 351 EMLSTMLEKGLVSSVVPFNALIDGYCKRGMMEDAICVLDSMKLNKVCPNSRTYNELICGF 410

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
                   A+ +  +M  + ++PN  TY  LI GL       A+++  A +    M+  G
Sbjct: 411 CRKKSMDRAMALLNKMYENKLSPNLVTYNTLIHGLC-----KARVVDSAWRLHHLMIKDG 465

Query: 193 MRPNAGT-----------------------------------YTAVFEAFVRAQKVDEAR 217
             P+  T                                   YTA+ + + +A+K  +A 
Sbjct: 466 FVPDQRTFCAFIDCLCKMGKVEQAHQVFESLKEKHAEANEFLYTALIDGYCKAEKFSDAH 525

Query: 218 GLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
            L ++M  +G  P+       L   R +G
Sbjct: 526 LLFKRMLFEGCFPNSITFNVLLDGLRKEG 554


>gi|224133318|ref|XP_002321537.1| predicted protein [Populus trichocarpa]
 gi|222868533|gb|EEF05664.1| predicted protein [Populus trichocarpa]
          Length = 834

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 9/173 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F++M+  G   + V    + D  +K G  + A++++ +++  G  PD   ++ +I   
Sbjct: 394 EVFNQMQKAGCEPDRVTYCTLIDIHAKAGFLNFAMEMYQRMQAAGLSPDTFTYSVMINCL 453

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             AG    A ++F  M+  G  PN  TY ++I     A    A+   +A K   +M   G
Sbjct: 454 GKAGHLAAADKLFCEMIEQGCVPNLVTYNIMI-----ALQAKARNYQNALKLYRDMQNAG 508

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
             P+  TY+ V E    +  +DEA  +  +MK K +VPDE  V   L+D  G+
Sbjct: 509 FEPDKVTYSIVMEVLGHSGYLDEAEAIFSEMKRKNWVPDEP-VYGLLVDLWGK 560



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 83/162 (51%), Gaps = 8/162 (4%)

Query: 74  LQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           + ++  +M  +G     V   ++  +  +    ++A+++F Q++  G  PD V +  +I+
Sbjct: 357 INKLLDQMVRDGCQPTVVTYNRLIHSYGRANYLNDAVEVFNQMQKAGCEPDRVTYCTLID 416

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
            +A AG    A+ ++ RM A+G++P+ +TY+V+I  L     G A  L  A K   EM+ 
Sbjct: 417 IHAKAGFLNFAMEMYQRMQAAGLSPDTFTYSVMINCL-----GKAGHLAAADKLFCEMIE 471

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           +G  PN  TY  +     +A+    A  L + M+  GF PD+
Sbjct: 472 QGCVPNLVTYNIMIALQAKARNYQNALKLYRDMQNAGFEPDK 513



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/188 (23%), Positives = 83/188 (44%), Gaps = 33/188 (17%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E++ +M+  GL+ +      M + L K G    A +LF ++ ++G +P++V +  +I   
Sbjct: 429 EMYQRMQAAGLSPDTFTYSVMINCLGKAGHLAAADKLFCEMIEQGCVPNLVTYNIMIALQ 488

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK--------------------------- 165
           A A   + AL+++  M  +G  P+  TY+++++                           
Sbjct: 489 AKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHSGYLDEAEAIFSEMKRKNWVPDE 548

Query: 166 ---GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
              GL     G A  +  A ++   M+  G+ PN  T  ++  AF+R  ++ +A  LLQ 
Sbjct: 549 PVYGLLVDLWGKAGNVEKAWEWYQAMLHAGLCPNVPTCNSLLSAFLRVNRLPDAYNLLQS 608

Query: 223 MKAKGFVP 230
           M   G  P
Sbjct: 609 MLNLGLNP 616



 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 67/159 (42%), Gaps = 8/159 (5%)

Query: 72  RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           +N  +++  M+  G   + V    + + L   G   EA  +F+++K K  +PD   +  +
Sbjct: 495 QNALKLYRDMQNAGFEPDKVTYSIVMEVLGHSGYLDEAEAIFSEMKRKNWVPDEPVYGLL 554

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           ++ +  AG  ++A   +  ML +G+ PN  T   L+             L DA   L  M
Sbjct: 555 VDLWGKAGNVEKAWEWYQAMLHAGLCPNVPTCNSLLSAFL-----RVNRLPDAYNLLQSM 609

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
           +  G+ P+  TYT +      A+   +     + M   G
Sbjct: 610 LNLGLNPSLQTYTLLLSCCTEARSPYDMGCYCELMSVTG 648



 Score = 41.2 bits (95), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 6/90 (6%)

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           G   + YTY  ++  L     G AK      K L +MV  G +P   TY  +  ++ RA 
Sbjct: 333 GFKHDGYTYTTMVGIL-----GRAKQFVAINKLLDQMVRDGCQPTVVTYNRLIHSYGRAN 387

Query: 212 KVDEARGLLQQMKAKGFVPDEKAVKEALID 241
            +++A  +  QM+  G  PD +     LID
Sbjct: 388 YLNDAVEVFNQMQKAGCEPD-RVTYCTLID 416


>gi|302794005|ref|XP_002978767.1| hypothetical protein SELMODRAFT_109632 [Selaginella moellendorffii]
 gi|300153576|gb|EFJ20214.1| hypothetical protein SELMODRAFT_109632 [Selaginella moellendorffii]
          Length = 521

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 95/200 (47%), Gaps = 11/200 (5%)

Query: 50  KSKLPPPYDPFKK--VVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTH 104
           K +  P  D + +  V+  +  +P   + ++  MR      N      + +A ++ GL  
Sbjct: 202 KYECEPNIDTYNRMIVIYGKAGEPSKAEMLYRSMRRAMCPPNICTFTALMNAFARQGLYR 261

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA + F ++++  + PD  A+ A++EAY+  G    AL +F  M  +G  P+  ++ +LI
Sbjct: 262 EAERYFDKLQEFDYKPDHYAYNALMEAYSQGGSPAGALEIFQTMQRNGCFPDTVSHNILI 321

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
                 A G A +  DA+K    M   G  PN  +   +  A+ RA +V+EA  L+  M+
Sbjct: 322 N-----AYGRAGLYEDAEKIFKSMQSAGFSPNLKSNMLLLSAYARAGRVEEAEELVSAME 376

Query: 225 AKGFVPDEKAVKEALIDKRG 244
             G  PD   +  ALI+  G
Sbjct: 377 RDGTKPD-TLIYNALINAYG 395



 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 75/167 (44%), Gaps = 11/167 (6%)

Query: 71  PRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P    EIF  M+  G   + V    + +A  + GL  +A ++F  ++  G  P++ ++  
Sbjct: 295 PAGALEIFQTMQRNGCFPDTVSHNILINAYGRAGLYEDAEKIFKSMQSAGFSPNLKSNML 354

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           ++ AYA AG+ +EA  +   M   G  P+   Y  LI     +         D +  L +
Sbjct: 355 LLSAYARAGRVEEAEELVSAMERDGTKPDTLIYNALINAYGVSGRHE-----DMEALLAK 409

Query: 188 MV---GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           MV    K  +P+ GTY  + + + +A  + +A  L Q +     VPD
Sbjct: 410 MVKSSSKQTKPDIGTYNTLIQVYAQAGFIPKAEELFQGLARLKLVPD 456



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 68/131 (51%), Gaps = 5/131 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +A S+ G    AL++F  ++  G  PD V+H  +I AY  AG  ++A ++F  M ++G
Sbjct: 285 LMEAYSQGGSPAGALEIFQTMQRNGCFPDTVSHNILINAYGRAGLYEDAEKIFKSMQSAG 344

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            +PN  +  +L+   A A       + +A++ +  M   G +P+   Y A+  A+  + +
Sbjct: 345 FSPNLKSNMLLLSAYARAGR-----VEEAEELVSAMERDGTKPDTLIYNALINAYGVSGR 399

Query: 213 VDEARGLLQQM 223
            ++   LL +M
Sbjct: 400 HEDMEALLAKM 410



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 77/163 (47%), Gaps = 11/163 (6%)

Query: 75  QEIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           ++IF  M++ G + N    + +  A ++ G   EA +L + ++  G  PD + + A+I A
Sbjct: 334 EKIFKSMQSAGFSPNLKSNMLLLSAYARAGRVEEAEELVSAMERDGTKPDTLIYNALINA 393

Query: 132 YASAGQGKEALRVFMRMLASG---VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           Y  +G+ ++   +  +M+ S      P+  TY  LI+  A A       +  A++    +
Sbjct: 394 YGVSGRHEDMEALLAKMVKSSSKQTKPDIGTYNTLIQVYAQAG-----FIPKAEELFQGL 448

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
               + P+A T+TA+   + + +   +   +L++M   G   D
Sbjct: 449 ARLKLVPDATTWTALMGGYAKKKLYRKCTSILKKMLESGCRAD 491



 Score = 42.4 bits (98), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 35/160 (21%), Positives = 69/160 (43%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNN--AVKMFDALSKDGLTHE-ALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+F +M+  G +    A   F  + +D   +  A  LF  ++     P++  +  +I  
Sbjct: 159 EELFVQMQKRGYSPGPLACNTFLHVLEDAKEYRRAEALFRDLEKYECEPNIDTYNRMIVI 218

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y  AG+  +A  ++  M  +   PN  T+  L+   A        +  +A++Y  ++   
Sbjct: 219 YGKAGEPSKAEMLYRSMRRAMCPPNICTFTALMNAFARQG-----LYREAERYFDKLQEF 273

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             +P+   Y A+ EA+ +      A  + Q M+  G  PD
Sbjct: 274 DYKPDHYAYNALMEAYSQGGSPAGALEIFQTMQRNGCFPD 313


>gi|297800104|ref|XP_002867936.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297313772|gb|EFH44195.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 817

 Score = 80.9 bits (198), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 44/134 (32%), Positives = 73/134 (54%), Gaps = 5/134 (3%)

Query: 95  DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           +A  K G   EA++LF+++++ G +P+VV +  VI+    +G+  EA     +M+  GV 
Sbjct: 260 NAFCKGGKVEEAIELFSKMEEAGVVPNVVTYNTVIDGLGMSGRYDEAFMFKEKMVERGVE 319

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
           P   TY++L+KGL       AK +GDA   L EM  KG  PN   Y  + ++ + A  ++
Sbjct: 320 PTLITYSILVKGLT-----KAKRIGDAYCVLKEMTEKGFPPNVIVYNNLIDSLIEAGSLN 374

Query: 215 EARGLLQQMKAKGF 228
           +A  +   M +KG 
Sbjct: 375 KAIEIKDLMVSKGL 388



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 56/185 (30%), Positives = 84/185 (45%), Gaps = 10/185 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           Q++F +M +  L  N V    +  A  + G    AL+L   +K KG  P+   +T++I+ 
Sbjct: 622 QKLFDEMMSNNLQPNTVVYNHLIGAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKG 681

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
            +   + +EA  +   M   G+ PN + Y  LI G      G    +   +  L EM  K
Sbjct: 682 MSIISRVEEAKLLLEEMRMEGLEPNVFHYTALIDGY-----GKLGQMVKVECLLREMHSK 736

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVI 251
            + PN  TYT +   + R   V EA  LL +M+ KG VPD    KE +     QG  GV+
Sbjct: 737 NVHPNKITYTVMIGGYARDGNVTEASRLLHEMREKGIVPDSITYKEFIYGYLKQG--GVL 794

Query: 252 NILFG 256
               G
Sbjct: 795 QAFKG 799



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/116 (32%), Positives = 64/116 (55%), Gaps = 5/116 (4%)

Query: 116 KGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNA 175
           KG  PDV   T  I A+   G+ +EA+ +F +M  +GV PN  TY  +I GL     G +
Sbjct: 246 KGVSPDVYLFTTAINAFCKGGKVEEAIELFSKMEEAGVVPNVVTYNTVIDGL-----GMS 300

Query: 176 KILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
               +A  +  +MV +G+ P   TY+ + +   +A+++ +A  +L++M  KGF P+
Sbjct: 301 GRYDEAFMFKEKMVERGVEPTLITYSILVKGLTKAKRIGDAYCVLKEMTEKGFPPN 356



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/141 (29%), Positives = 73/141 (51%), Gaps = 6/141 (4%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA+Q +   K  G +PDV  ++ +I+    A + +E  ++F  M+++ + PN   Y  LI
Sbjct: 585 EAIQFWGDCKRNGMIPDVYTYSVMIDGCCKAERTEEGQKLFDEMMSNNLQPNTVVYNHLI 644

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
                +       L  A +   +M  KG+ PN+ TYT++ +      +V+EA+ LL++M+
Sbjct: 645 GAYCRSGR-----LSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLLEEMR 699

Query: 225 AKGFVPDEKAVKEALIDKRGQ 245
            +G  P+      ALID  G+
Sbjct: 700 MEGLEPNVFHYT-ALIDGYGK 719



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L K G   +A++L+ +  +KG + D     A++     AG+ +E  R+   +L  G
Sbjct: 468 LISGLCKHGKHSKAVELWLKFLNKGFLVDTKTSNALLHGLCEAGKLEEGFRIQKEILGRG 527

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
              +  +Y  LI G      GN K L +A  ++ EMV KG++P+  TY+ +    +   K
Sbjct: 528 FVMDRVSYNTLISGCC----GNKK-LDEAFMFMDEMVKKGLKPDNYTYSILIRGLLNMNK 582

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V+EA       K  G +PD
Sbjct: 583 VEEAIQFWGDCKRNGMIPD 601



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 70/145 (48%), Gaps = 7/145 (4%)

Query: 87  TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFM 146
           T+NA  +   L + G   E  ++  +I  +G + D V++  +I       +  EA     
Sbjct: 499 TSNA--LLHGLCEAGKLEEGFRIQKEILGRGFVMDRVSYNTLISGCCGNKKLDEAFMFMD 556

Query: 147 RMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEA 206
            M+  G+ P+ YTY++LI+GL      N   + +A ++  +    GM P+  TY+ + + 
Sbjct: 557 EMVKKGLKPDNYTYSILIRGLL-----NMNKVEEAIQFWGDCKRNGMIPDVYTYSVMIDG 611

Query: 207 FVRAQKVDEARGLLQQMKAKGFVPD 231
             +A++ +E + L  +M +    P+
Sbjct: 612 CCKAERTEEGQKLFDEMMSNNLQPN 636



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/138 (25%), Positives = 66/138 (47%), Gaps = 5/138 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L+K     +A  +  ++ +KG  P+V+ +  +I++   AG   +A+ +   M++ G
Sbjct: 328 LVKGLTKAKRIGDAYCVLKEMTEKGFPPNVIVYNNLIDSLIEAGSLNKAIEIKDLMVSKG 387

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           ++  + TY  LIKG   +  G A I   A++ L EM+  G   N G++T+V         
Sbjct: 388 LSLTSSTYNTLIKGYCKS--GQADI---AERLLKEMLSIGFNVNQGSFTSVICLLCSHHM 442

Query: 213 VDEARGLLQQMKAKGFVP 230
            D A   + +M  +   P
Sbjct: 443 FDSALRFVGEMLLRNMSP 460



 Score = 46.6 bits (109), Expect = 0.010,   Method: Composition-based stats.
 Identities = 41/180 (22%), Positives = 76/180 (42%), Gaps = 13/180 (7%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +M  +G   N +    + D+L + G  ++A+++   +  KG       +  +I+ Y 
Sbjct: 344 VLKEMTEKGFPPNVIVYNNLIDSLIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYC 403

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            +GQ   A R+   ML+ G   N  ++  +I  L +       +   A +++ EM+ + M
Sbjct: 404 KSGQADIAERLLKEMLSIGFNVNQGSFTSVICLLCS-----HHMFDSALRFVGEMLLRNM 458

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL-----IDKRGQGFR 248
            P  G  T +     +  K  +A  L  +   KGF+ D K     L       K  +GFR
Sbjct: 459 SPGGGLLTTLISGLCKHGKHSKAVELWLKFLNKGFLVDTKTSNALLHGLCEAGKLEEGFR 518



 Score = 39.3 bits (90), Expect = 1.6,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 10/93 (10%)

Query: 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQK--YLMEMVGKGMRPNAG 198
           AL VF  +   G+ P+  T  +L+  L  A +         QK      +V KG+ P+  
Sbjct: 202 ALDVFPVLANKGMFPSKTTCNILLTSLVRATE--------FQKCCEAFHVVCKGVSPDVY 253

Query: 199 TYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +T    AF +  KV+EA  L  +M+  G VP+
Sbjct: 254 LFTTAINAFCKGGKVEEAIELFSKMEEAGVVPN 286


>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
 gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
          Length = 924

 Score = 80.9 bits (198), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 45/132 (34%), Positives = 68/132 (51%), Gaps = 8/132 (6%)

Query: 100 DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYT 159
           +G   +A  LF ++   G  PDVV +  +I+    A +   A  VF +M+  GV PN  T
Sbjct: 206 EGQVDKAYSLFLEM---GVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVT 262

Query: 160 YAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGL 219
           Y  +I GL  A + +      A+    +MV KG++P+  TY  + +   +AQ VD A G+
Sbjct: 263 YNTIIDGLCKAQEVDM-----AEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGV 317

Query: 220 LQQMKAKGFVPD 231
            QQM  +G  PD
Sbjct: 318 FQQMIDRGVKPD 329



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/126 (34%), Positives = 67/126 (53%), Gaps = 8/126 (6%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           E L +    +D    PDVV++  VI  + + GQ  +A  +F+ M   GV+P+  TY  +I
Sbjct: 176 ELLHMMVDGQDSSCSPDVVSYNIVINGFFNEGQVDKAYSLFLEM---GVSPDVVTYNTII 232

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            GL  A +     +  A+    +MV KG++PN  TY  + +   +AQ+VD A G+ Q+M 
Sbjct: 233 DGLCKAQE-----VDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMV 287

Query: 225 AKGFVP 230
            KG  P
Sbjct: 288 DKGVKP 293



 Score = 77.0 bits (188), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 45/158 (28%), Positives = 77/158 (48%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F KM  +G+  + V    + D L K      A  +F Q+ D+G  PD V +  +I+   
Sbjct: 282 VFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLC 341

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            A    +A  VF +M+  GV P+  TY ++I GL       A+ +  A+    +M+ KG+
Sbjct: 342 KAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLC-----KAQSVDRAEGVFQQMIDKGV 396

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +PN GTY  +   ++   + +E    +++M A    PD
Sbjct: 397 KPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPD 434



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 60/219 (27%), Positives = 104/219 (47%), Gaps = 20/219 (9%)

Query: 21  RITNTRVNATLQRSLSSSSDQPTKKYVNTKSK-LPPPYDPFKKVVDE----EPTDPRNLQ 75
           RI NT + A  +R++    D+    ++  K + L P    +  ++D        D   LQ
Sbjct: 506 RIFNTVICAYAKRAMI---DEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQ 562

Query: 76  EIFHKMRTEGLTNNAVKMFDALSKDGLT----HEALQLFAQIKDKGHMPDVVAHTAVIEA 131
             F++M  EG+T N V +F++L     T     +  +LF ++ ++G  PD+V    V+  
Sbjct: 563 --FNQMINEGVTPNNV-VFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLCN 619

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G+  EA R+   M+  G+ P+  +Y  LI G   A+      + +A K L  MV  
Sbjct: 620 LCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASR-----MDEAVKLLDGMVSA 674

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           G++PN  +Y  +   + +A ++D A  L ++M  KG  P
Sbjct: 675 GLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTP 713



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/162 (26%), Positives = 82/162 (50%), Gaps = 10/162 (6%)

Query: 74  LQEIFHKMRTEGLTNNAVKMFD----ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           + ++ + M   G++ N  ++F+    A +K  +  E + +F ++K +G  P+VV +  +I
Sbjct: 489 MHDLLNLMVANGISPNH-RIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLI 547

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
           +A    G+  +A+  F +M+  GV PN   +  L+ GL    D   K+    ++  +EM+
Sbjct: 548 DALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGL-CTVDKWEKV----EELFLEML 602

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +G+RP+   +  V     +  +V EAR L+  M   G  PD
Sbjct: 603 NQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPD 644



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/153 (26%), Positives = 75/153 (49%), Gaps = 8/153 (5%)

Query: 74  LQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           ++E+F +M  +G+  + V    +   L K+G   EA +L   +   G  PDV+++  +I+
Sbjct: 594 VEELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLID 653

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
            +  A +  EA+++   M+++G+ PN  +Y  L+ G   A       + +A     EM+ 
Sbjct: 654 GHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGR-----IDNAYCLFREMLR 708

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           KG+ P   TY  +     R+ +  EAR L   M
Sbjct: 709 KGVTPGVETYNTILNGLFRSGRFSEARELYVNM 741



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/161 (24%), Positives = 82/161 (50%), Gaps = 8/161 (4%)

Query: 74  LQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           +  IF KM+ +GL+ N V    + DAL K G   +A+  F Q+ ++G  P+ V   +++ 
Sbjct: 524 VMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVY 583

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
              +  + ++   +F+ ML  G+ P+   +  ++  L        +++ +A++ +  MV 
Sbjct: 584 GLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLCNLCK----EGRVM-EARRLIDSMVC 638

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            G++P+  +Y  + +    A ++DEA  LL  M + G  P+
Sbjct: 639 MGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPN 679



 Score = 63.5 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 44/177 (24%), Positives = 78/177 (44%), Gaps = 16/177 (9%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M  +G+  + +    + D L K      A  +F Q+ DKG  P+   +  +I  Y 
Sbjct: 352 VFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYL 411

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
           S GQ +E ++    M A  + P+ +TY +L+  L      N     +A+     M+ KG+
Sbjct: 412 STGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCN-----EARSLFDSMIRKGI 466

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA--------VKEALIDK 242
           +P+   Y  +   + +   + E   LL  M A G  P+ +          K A+ID+
Sbjct: 467 KPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPNHRIFNTVICAYAKRAMIDE 523



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 55/139 (39%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M     K G   E   L   +   G  P+      VI AYA      E + +F++M   G
Sbjct: 476 MLHGYGKKGALSEMHDLLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQG 535

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           ++PN  TY  LI  L          + DA     +M+ +G+ PN   + ++        K
Sbjct: 536 LSPNVVTYGTLIDALCKLGR-----VDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDK 590

Query: 213 VDEARGLLQQMKAKGFVPD 231
            ++   L  +M  +G  PD
Sbjct: 591 WEKVEELFLEMLNQGIRPD 609



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 5/132 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M D L K G   +A+ LFA I   G +P VV +  + E     G  +E   +F  M  SG
Sbjct: 791 MIDGLFKGGRKEDAMDLFAAIPANGLVPSVVTYRLIAENLIEEGSLEELDCLFSVMEKSG 850

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            APN++    LI+ L    +     +  A  YL ++  K     A T + +   F R + 
Sbjct: 851 TAPNSHMLNALIRKLLDRGE-----IPRAGAYLSKLDEKNFSLEASTTSMLISLFSREEY 905

Query: 213 VDEARGLLQQMK 224
              A+ L ++ +
Sbjct: 906 QQHAKSLPEKCR 917



 Score = 39.3 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 61/136 (44%), Gaps = 5/136 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   K+    EA ++F  +       D++    +I+     G+ ++A+ +F  + A+G
Sbjct: 756 ILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITFNIMIDGLFKGGRKEDAMDLFAAIPANG 815

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+  TY ++ + L    +G+ + L D    +ME  G    PN+    A+    +   +
Sbjct: 816 LVPSVVTYRLIAENL--IEEGSLEEL-DCLFSVMEKSGTA--PNSHMLNALIRKLLDRGE 870

Query: 213 VDEARGLLQQMKAKGF 228
           +  A   L ++  K F
Sbjct: 871 IPRAGAYLSKLDEKNF 886


>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
 gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
          Length = 616

 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 78/159 (49%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F  M   G     +    + + L K G T  A  LF ++ + G  PDVV ++ +I++ 
Sbjct: 213 ELFDDMVARGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSL 272

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               +  EAL +F  M A G++PN +TY  LI+GL      N     +A   L EM+   
Sbjct: 273 CKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLC-----NFSRWREASAMLNEMMSLN 327

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + PN  T++ +   F +   V EARG+L+ M   G  P+
Sbjct: 328 IMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPN 366



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 82/161 (50%), Gaps = 8/161 (4%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +++F++M  +GLT + V    + D L + G   EA  LF  +   G++PD+  ++ +++ 
Sbjct: 422 KQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDG 481

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +   G   +A R+F  M ++ + PN   Y +LI  +  + +     L +A+K   E+  +
Sbjct: 482 FCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRN-----LKEARKLFSELFVQ 536

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           G++PN   YT +     +   +DEA    + M+  G  P+E
Sbjct: 537 GLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPNE 577



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 75/154 (48%), Gaps = 13/154 (8%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA QLF ++  +G  PD+V++  +I+     G+ +EA  +F  ML +G  P+  TY++L+
Sbjct: 420 EAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILL 479

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            G           L  A +    M    ++PN   Y  + +A  +++ + EAR L  ++ 
Sbjct: 480 DGFCKQG-----YLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELF 534

Query: 225 AKGFVPDEKA--------VKEALIDKRGQGFRGV 250
            +G  P+ +          KE L+D+  + FR +
Sbjct: 535 VQGLQPNVQIYTTIINGLCKEGLLDEALEAFRNM 568



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 72/139 (51%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +   K+G   EA  +   + + G  P+VV +++++  Y+   +  EA ++F  M+  G
Sbjct: 338 LINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKG 397

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+ ++Y +LI G        AK +G+A++   EM+ +G+ P+  +Y  + +   +  +
Sbjct: 398 CKPDVFSYNILINGYC-----KAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGR 452

Query: 213 VDEARGLLQQMKAKGFVPD 231
           + EA  L + M   G +PD
Sbjct: 453 LREAHDLFKNMLTNGNLPD 471



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 74/164 (45%), Gaps = 10/164 (6%)

Query: 72  RNLQEIFHKMRTEG----LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           R   ++F  M T G    L   ++ + D   K G   +A +LF  ++     P++V +  
Sbjct: 454 REAHDLFKNMLTNGNLPDLCTYSI-LLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNI 512

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           +I+A   +   KEA ++F  +   G+ PN   Y  +I GL         +L +A +    
Sbjct: 513 LIDAMCKSRNLKEARKLFSELFVQGLQPNVQIYTTIINGLCKEG-----LLDEALEAFRN 567

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           M   G  PN  +Y  +   F++ +    A  L+ +M+ KGFV D
Sbjct: 568 MEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMREKGFVAD 611



 Score = 37.0 bits (84), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 6/96 (6%)

Query: 72  RNLQE---IFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAH 125
           RNL+E   +F ++  +GL  N      + + L K+GL  EAL+ F  +++ G  P+  ++
Sbjct: 521 RNLKEARKLFSELFVQGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPNEFSY 580

Query: 126 TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYA 161
             +I  +        A+++   M   G   +  T A
Sbjct: 581 NVIIRGFLQHKDESRAVQLIGEMREKGFVADVATTA 616


>gi|357499777|ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495192|gb|AES76395.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 612

 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 79/135 (58%), Gaps = 5/135 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D++ K  L +EA  L++++  KG  PDVV ++A+I  +   G+  +A+ +F +M++  
Sbjct: 202 IIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEE 261

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+ YT+++L+ G     +G  K   +A+  L  M+ +G++P+  TY ++ + +   ++
Sbjct: 262 INPDVYTFSILVDGF--CKEGRVK---EAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQ 316

Query: 213 VDEARGLLQQMKAKG 227
           V++A+ +   M   G
Sbjct: 317 VNKAKSIFNTMAQGG 331



 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 77/162 (47%), Gaps = 8/162 (4%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
            +F +M  + +  + V    + D L K G    AL+L  ++ D+G   D + + ++++A 
Sbjct: 357 NLFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDAL 416

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               Q  +A+ +  +M   G+ P+ YTY +LI GL          L DAQ    +++ KG
Sbjct: 417 CKNHQVDKAIALLTKMKDEGIQPDMYTYTILIDGLCKGGR-----LKDAQNIFEDLLVKG 471

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
                 TYT + + F      D+A  LL +M+  G +P+ K 
Sbjct: 472 YNITVYTYTVMIQGFCDNDLFDKALALLSKMEDNGCIPNAKT 513



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 72/144 (50%), Gaps = 7/144 (4%)

Query: 86  LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVF 145
           +T N++   DAL K+    +A+ L  ++KD+G  PD+  +T +I+     G+ K+A  +F
Sbjct: 407 ITYNSI--LDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILIDGLCKGGRLKDAQNIF 464

Query: 146 MRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFE 205
             +L  G     YTY V+I+G       +  +   A   L +M   G  PNA TY  +  
Sbjct: 465 EDLLVKGYNITVYTYTVMIQGFC-----DNDLFDKALALLSKMEDNGCIPNAKTYEIIIL 519

Query: 206 AFVRAQKVDEARGLLQQMKAKGFV 229
           +     + D A  LL++M A+G +
Sbjct: 520 SLFEKDENDMAEKLLREMIARGLL 543



 Score = 73.9 bits (180), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 75/155 (48%), Gaps = 8/155 (5%)

Query: 80  KMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           +M   G+ ++ V    + +  S+ G TH +  +FA I  KG+ P+ +  T +I+     G
Sbjct: 81  EMEFNGIASDLVTFNILINCFSQLGHTHFSFSVFANILKKGYEPNAITLTTLIKGLCLKG 140

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196
           Q  +AL    +++A G   N   Y  LI GL      +A     A + L  + GK ++PN
Sbjct: 141 QIHQALHFHDKVVALGFHLNKVCYGTLINGLCKVGQTSA-----ALQLLRRVDGKLVQPN 195

Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              Y  + ++  + + V+EA  L  +M +KG  PD
Sbjct: 196 VVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPD 230



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K G T  ALQL  ++  K   P+VV +  +I++        EA  ++  M++ G
Sbjct: 167 LINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKG 226

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           ++P+  TY+ LI G           L DA     +M+ + + P+  T++ + + F +  +
Sbjct: 227 ISPDVVTYSALISGFCILGK-----LNDAIGLFNKMISEEINPDVYTFSILVDGFCKEGR 281

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V EA+ +L  M  +G  PD
Sbjct: 282 VKEAKNVLAMMMKQGIKPD 300



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 9/168 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F+KM +E +  +      + D   K+G   EA  + A +  +G  PDVV + ++++ Y 
Sbjct: 253 LFNKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYC 312

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
              Q  +A  +F  M   GV  N  +Y ++I G         K + +A     EM  K +
Sbjct: 313 LVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCK-----IKKVDEAMNLFKEMHCKNI 367

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
            P+  TY ++ +   ++ K+  A  L+ +M  +G VP +K    +++D
Sbjct: 368 IPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRG-VPHDKITYNSILD 414


>gi|225459754|ref|XP_002284756.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
           mitochondrial-like [Vitis vinifera]
          Length = 531

 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 76/157 (48%), Gaps = 9/157 (5%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F++M   G   + +    +  +LSK     EA   F  +KD+   PDVV +T+++  +  
Sbjct: 204 FNRMEDYGCKPDKIAFSVVISSLSKKRRAIEAQSFFDSLKDRFE-PDVVVYTSLVHGWCR 262

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
           AG   EA RVF  M  +G+ PN YTY+++I  L  +       +  A     EM+  G  
Sbjct: 263 AGNISEAERVFGEMKMAGIQPNVYTYSIVIDALCRSGQ-----ITRAHDVFSEMIDVGCD 317

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           PNA T+  +    V+A + ++   +  QMK  G  PD
Sbjct: 318 PNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPD 354



 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 75/153 (49%), Gaps = 9/153 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +F +M+  G+  N      + DAL + G    A  +F+++ D G  P+ +    ++  
Sbjct: 270 ERVFGEMKMAGIQPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRV 329

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +  AG+ ++ L+V+ +M   G  P+A TY  LI+  +   D N   L +A K ++  V K
Sbjct: 330 HVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIE--SHCRDDN---LEEAVK-ILNSVKK 383

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           G   NA ++  +F    +   V+ A  +  +MK
Sbjct: 384 GCNLNASSFNPIFGCISKLGDVNSAHRMFAKMK 416



 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 12/183 (6%)

Query: 53  LPPPYDPFKKVVDEEPTDPRNLQEIFHKMRT--EGLTNNAVK---MFDALSKDGLTHEAL 107
            PP    +  +++    D  NL+E    + +  +G   NA     +F  +SK G  + A 
Sbjct: 351 CPPDAITYNFLIESHCRDD-NLEEAVKILNSVKKGCNLNASSFNPIFGCISKLGDVNSAH 409

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
           ++FA++KD    P+ V +  ++  +A        L++   M  + + PNA TY VLI   
Sbjct: 410 RMFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKLRKEMDENEIEPNANTYRVLISTF 469

Query: 168 AAAADGNAKILGDAQKYLMEMV-GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK 226
                 N     +A  +  EM+  K +RP+   Y  V +   +A ++ +   L+++M  +
Sbjct: 470 CGIGHWN-----NAYSFFKEMIEEKCLRPSLPVYEMVLQQLRKAGQLKKHEELVEKMVNR 524

Query: 227 GFV 229
           GFV
Sbjct: 525 GFV 527



 Score = 43.5 bits (101), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 43/202 (21%), Positives = 75/202 (37%), Gaps = 48/202 (23%)

Query: 75  QEIFHKMRTEGLTNNAVKMFDALS---KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            ++F +M   G   NA+   + +    K G T + LQ++ Q+K  G  PD + +  +IE+
Sbjct: 305 HDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIES 364

Query: 132 YASAGQGKEAL----------------------------------RVFMRMLASGVAPNA 157
           +      +EA+                                  R+F +M      PN 
Sbjct: 365 HCRDDNLEEAVKILNSVKKGCNLNASSFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPNT 424

Query: 158 YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
            TY +L++  A     + K      K   EM    + PNA TY  +   F      + A 
Sbjct: 425 VTYNILMRMFA-----DKKSTDMVLKLRKEMDENEIEPNANTYRVLISTFCGIGHWNNAY 479

Query: 218 GLLQQMKAKGFVPDEKAVKEAL 239
              ++M       +EK ++ +L
Sbjct: 480 SFFKEM------IEEKCLRPSL 495


>gi|326505340|dbj|BAK03057.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326511084|dbj|BAJ91889.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518326|dbj|BAJ88192.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518558|dbj|BAJ88308.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 556

 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 79/157 (50%), Gaps = 8/157 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+ H+++ +G T   +    + D L+K G T EAL+L  ++  KG  PD++ ++ +    
Sbjct: 383 ELLHQLKDKGCTPVLISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTISSGL 442

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+ +EA++ F ++   G+ PN   Y  ++ GL      ++ I  D   Y   MV  G
Sbjct: 443 CREGRIEEAIKAFCKVQDMGIRPNTVLYNAILLGLCKRRATHSAI--DLFTY---MVSNG 497

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFV 229
             PN  TYT + E       V EAR ++ ++ ++G V
Sbjct: 498 CMPNESTYTILIEGLAYEGLVKEAREMMAELCSRGVV 534



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 77/159 (48%), Gaps = 8/159 (5%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +  AL + G    A++L  Q+KDKG  P ++++  VI+    AG+ +EAL +   M+  G
Sbjct: 368 LLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTEEALELLNEMVTKG 427

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+  TY+ +  GL          + +A K   ++   G+RPN   Y A+     + + 
Sbjct: 428 LQPDIITYSTISSGLCREGR-----IEEAIKAFCKVQDMGIRPNTVLYNAILLGLCKRRA 482

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVI 251
              A  L   M + G +P+E +    LI+  G  + G++
Sbjct: 483 THSAIDLFTYMVSNGCMPNE-STYTILIE--GLAYEGLV 518



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 83/195 (42%), Gaps = 26/195 (13%)

Query: 58  DPFKKVVDEEPTDP--RNLQEIFHKMRTEGLTNNAVKMFDALSKDGLT------------ 103
           D  +++V   P +P       +   +   G T+NA+ + D + + G              
Sbjct: 137 DNARRLVAAMPMEPDTYTYNTLIRGLCGRGRTDNALAVLDDMLRRGCVPDVVTYTILLEA 196

Query: 104 -------HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
                   +A++L  +++DKG  PD+V +  V+      G+  +A+     + + G  PN
Sbjct: 197 TCKRSGYKQAVKLLDEMRDKGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPN 256

Query: 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
             +Y +++KGL  A         DA+K + EM  KG  PN  T+  +     R   V+ A
Sbjct: 257 TVSYNIVLKGLCTAERWE-----DAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPA 311

Query: 217 RGLLQQMKAKGFVPD 231
             +L Q+   G  P+
Sbjct: 312 MEILDQIPKYGCTPN 326



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 66/139 (47%), Gaps = 13/139 (9%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L   G T EA ++ A  +     PDV+++ A++  Y   GQ   A R+   M    
Sbjct: 96  LIKKLCASGRTAEARRVLASCE-----PDVMSYNAMVAGYCVTGQLDNARRLVAAM---P 147

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+ YTY  LI+GL      +     +A   L +M+ +G  P+  TYT + EA  +   
Sbjct: 148 MEPDTYTYNTLIRGLCGRGRTD-----NALAVLDDMLRRGCVPDVVTYTILLEATCKRSG 202

Query: 213 VDEARGLLQQMKAKGFVPD 231
             +A  LL +M+ KG  PD
Sbjct: 203 YKQAVKLLDEMRDKGCAPD 221



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 5/127 (3%)

Query: 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
            +A +L A++  KG  P+VV    +I      G  + A+ +  ++   G  PN+ +Y  +
Sbjct: 274 EDAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPI 333

Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           +           K +  A  ++  MV  G  P+  +Y  +  A  R  +VD A  LL Q+
Sbjct: 334 LHAFC-----KQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQL 388

Query: 224 KAKGFVP 230
           K KG  P
Sbjct: 389 KDKGCTP 395


>gi|115466100|ref|NP_001056649.1| Os06g0125300 [Oryza sativa Japonica Group]
 gi|6983867|dbj|BAA90802.1| salt-inducible protein-like [Oryza sativa Japonica Group]
 gi|113594689|dbj|BAF18563.1| Os06g0125300 [Oryza sativa Japonica Group]
 gi|125553869|gb|EAY99474.1| hypothetical protein OsI_21443 [Oryza sativa Indica Group]
 gi|125595884|gb|EAZ35664.1| hypothetical protein OsJ_19951 [Oryza sativa Japonica Group]
          Length = 535

 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 69/126 (54%), Gaps = 5/126 (3%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           AL++  ++   G  PDVV +T V+ AY   G  + A ++F  ++ASG  P+   Y VLI 
Sbjct: 212 ALKVLDEMPGLGITPDVVTYTTVLSAYCGKGDIEGAQKLFDDIIASGRRPDVTMYTVLID 271

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G      GN   L DA + + EM    ++PN  TY+ V EA  + +K  EAR  +++M  
Sbjct: 272 GYCQC--GN---LQDAARIMDEMEAARVQPNEVTYSVVIEACCKEEKPIEARDFMREMLG 326

Query: 226 KGFVPD 231
            G+VPD
Sbjct: 327 AGYVPD 332



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 85/191 (44%), Gaps = 23/191 (12%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++  +M   G+T + V    +  A    G    A +LF  I   G  PDV  +T +I+ Y
Sbjct: 214 KVLDEMPGLGITPDVVTYTTVLSAYCGKGDIEGAQKLFDDIIASGRRPDVTMYTVLIDGY 273

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G  ++A R+   M A+ V PN  TY+V+I+   A       I  +A+ ++ EM+G G
Sbjct: 274 CQCGNLQDAARIMDEMEAARVQPNEVTYSVVIE---ACCKEEKPI--EARDFMREMLGAG 328

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA-------------VKEA- 238
             P+      V +   +  K +EA  L + M+ K   PD                V+EA 
Sbjct: 329 YVPDTALGAKVVDVLCQDGKSEEAYQLWRWMEKKNVPPDNMVTSTLIYWLCKNGMVREAR 388

Query: 239 -LIDKRGQGFR 248
            L D+  +GF+
Sbjct: 389 NLFDELERGFK 399



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 68/139 (48%), Gaps = 6/139 (4%)

Query: 92  KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
           K+ D L +DG + EA QL+  ++ K   PD +  + +I      G  +EA  +F   L  
Sbjct: 338 KVVDVLCQDGKSEEAYQLWRWMEKKNVPPDNMVTSTLIYWLCKNGMVREARNLFDE-LER 396

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           G  P+  TY  LI GL    +     L +A +   +MV +G  PNA TY A+ +   +  
Sbjct: 397 GFKPSLLTYNSLISGLCENEE-----LQEAGRVWDDMVERGYEPNAMTYEALIKGLCKTG 451

Query: 212 KVDEARGLLQQMKAKGFVP 230
           K +E   + ++M ++G  P
Sbjct: 452 KPNEGATVFEEMVSRGCKP 470



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 63/131 (48%), Gaps = 6/131 (4%)

Query: 97  LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
           L K+G+  EA  LF ++ ++G  P ++ + ++I       + +EA RV+  M+  G  PN
Sbjct: 378 LCKNGMVREARNLFDEL-ERGFKPSLLTYNSLISGLCENEELQEAGRVWDDMVERGYEPN 436

Query: 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
           A TY  LIKGL      N     +      EMV +G +P++  +  + ++    +  D  
Sbjct: 437 AMTYEALIKGLCKTGKPN-----EGATVFEEMVSRGCKPSSLLFQVLVDSLSEPRHEDTI 491

Query: 217 RGLLQQMKAKG 227
           R +L+     G
Sbjct: 492 RKILETAALYG 502



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/113 (22%), Positives = 52/113 (46%), Gaps = 5/113 (4%)

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
           P++V+   +++     G    AL+V   M   G+ P+  TY  ++       D     + 
Sbjct: 191 PNLVSCNILLKGLVGIGDLDAALKVLDEMPGLGITPDVVTYTTVLSAYCGKGD-----IE 245

Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
            AQK   +++  G RP+   YT + + + +   + +A  ++ +M+A    P+E
Sbjct: 246 GAQKLFDDIIASGRRPDVTMYTVLIDGYCQCGNLQDAARIMDEMEAARVQPNE 298



 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 6/93 (6%)

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN  +  +L+KGL    D +A     A K L EM G G+ P+  TYT V  A+     
Sbjct: 189 ITPNLVSCNILLKGLVGIGDLDA-----ALKVLDEMPGLGITPDVVTYTTVLSAYCGKGD 243

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
           ++ A+ L   + A G  PD   +   LID   Q
Sbjct: 244 IEGAQKLFDDIIASGRRPD-VTMYTVLIDGYCQ 275



 Score = 45.8 bits (107), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 75/174 (43%), Gaps = 13/174 (7%)

Query: 73  NLQE---IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           NLQ+   I  +M    +  N V    + +A  K+    EA     ++   G++PD     
Sbjct: 278 NLQDAARIMDEMEAARVQPNEVTYSVVIEACCKEEKPIEARDFMREMLGAGYVPDTALGA 337

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
            V++     G+ +EA +++  M    V P+    + LI  L    +G  +      + L 
Sbjct: 338 KVVDVLCQDGKSEEAYQLWRWMEKKNVPPDNMVTSTLIYWLCK--NGMVR----EARNLF 391

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
           + + +G +P+  TY ++       +++ EA  +   M  +G+ P+     EALI
Sbjct: 392 DELERGFKPSLLTYNSLISGLCENEELQEAGRVWDDMVERGYEPN-AMTYEALI 444


>gi|413923869|gb|AFW63801.1| hypothetical protein ZEAMMB73_133996 [Zea mays]
          Length = 485

 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 71/134 (52%), Gaps = 5/134 (3%)

Query: 98  SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA 157
           S+    +EA Q FA++  +G +P+ + + ++I A   AG   EA ++   M  SG+ P+ 
Sbjct: 147 SRLDYVNEAYQAFAEMTSRGIVPNNITYNSIISALCKAGNMTEAFKLEQNMRQSGLVPDI 206

Query: 158 YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
           YT  +LI GL    +G  K++ +    L++M   G+ P+  TY  +  A+ RAQ ++ A 
Sbjct: 207 YTSNILIDGL--CREGKLKMVDNL---LLDMCSNGLTPDTVTYNTIINAYCRAQDMNSAM 261

Query: 218 GLLQQMKAKGFVPD 231
             + +M   G  PD
Sbjct: 262 NFMNKMLVAGCEPD 275



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 70/157 (44%), Gaps = 8/157 (5%)

Query: 78  FHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F +M + G+  N +    +  AL K G   EA +L   ++  G +PD+     +I+    
Sbjct: 159 FAEMTSRGIVPNNITYNSIISALCKAGNMTEAFKLEQNMRQSGLVPDIYTSNILIDGLCR 218

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            G+ K    + + M ++G+ P+  TY  +I     A D N+     A  ++ +M+  G  
Sbjct: 219 EGKLKMVDNLLLDMCSNGLTPDTVTYNTIINAYCRAQDMNS-----AMNFMNKMLVAGCE 273

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           P+  TY     +  R   +++A  LL ++      P+
Sbjct: 274 PDIFTYNIWMHSLYRNHMLNQAGKLLDELVVVDCSPN 310



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 75/183 (40%), Gaps = 16/183 (8%)

Query: 73  NLQEIF---HKMRTEGL-----TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVA 124
           N+ E F     MR  GL     T+N   + D L ++G       L   +   G  PD V 
Sbjct: 186 NMTEAFKLEQNMRQSGLVPDIYTSNI--LIDGLCREGKLKMVDNLLLDMCSNGLTPDTVT 243

Query: 125 HTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKY 184
           +  +I AY  A     A+    +ML +G  P+ +TY + +  L         +L  A K 
Sbjct: 244 YNTIINAYCRAQDMNSAMNFMNKMLVAGCEPDIFTYNIWMHSLY-----RNHMLNQAGKL 298

Query: 185 LMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRG 244
           L E+V     PN+ TY  + +  + +  +D A  L  ++    F P+   +   L     
Sbjct: 299 LDELVVVDCSPNSVTYNTLMDG-ICSDVLDRAMILTGRLIKMAFKPNTITLNVFLSHFCK 357

Query: 245 QGF 247
           QGF
Sbjct: 358 QGF 360


>gi|302821471|ref|XP_002992398.1| hypothetical protein SELMODRAFT_135281 [Selaginella moellendorffii]
 gi|300139814|gb|EFJ06548.1| hypothetical protein SELMODRAFT_135281 [Selaginella moellendorffii]
          Length = 698

 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 44/121 (36%), Positives = 67/121 (55%), Gaps = 5/121 (4%)

Query: 110 FAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169
           F +++D G  PDVV+  ++I+A   AGQ  EA +++ +M+  G AP A T+ ++I GL  
Sbjct: 445 FFKMQDGGIEPDVVSWNSLIDACCKAGQPLEARKLYYKMVNDGCAPTAQTFNIVIHGL-- 502

Query: 170 AADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFV 229
              G  K   D  + + EM  KGM PN  TYT + + + +A+   +A   LQ MK  G  
Sbjct: 503 ---GEHKRWNDVNEMVEEMRSKGMFPNVVTYTTLVDVYAQARLFQDAVECLQTMKEDGMG 559

Query: 230 P 230
           P
Sbjct: 560 P 560



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 81/165 (49%), Gaps = 8/165 (4%)

Query: 73  NLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           ++ E+  +MR++G+  N V    + D  ++  L  +A++    +K+ G  P   A++A+ 
Sbjct: 510 DVNEMVEEMRSKGMFPNVVTYTTLVDVYAQARLFQDAVECLQTMKEDGMGPSPTAYSALA 569

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
            AYA  G  ++ L V   M    +  N     +LI   + A  G ++      +Y+ E  
Sbjct: 570 NAYAQLGMCEQTLHVLQTMEKENIEINLAMLNLLINAFSMA--GRSQEAFAVFEYIKE-- 625

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
             G+  +  TYT + +A +RA+K+DE  G+  +M   G  PD KA
Sbjct: 626 -AGLTADKITYTTLMKALIRAEKLDEVSGVFDEMIKAGCRPDGKA 669



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 73/153 (47%), Gaps = 8/153 (5%)

Query: 81  MRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ 137
           +R  G++ N +    + DA ++ GL      L+ +++D    P+   +  +I  Y   GQ
Sbjct: 343 LRDTGMSINKITYCLLIDAYARAGLMDRLEALYQEMRDCDIRPNTYMYARMITIYRDTGQ 402

Query: 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA 197
            ++ +++   M  +GV P+A+ Y V+I        G  + L  A+    +M   G+ P+ 
Sbjct: 403 WQKGVKLLREMQQAGVTPDAHVYNVIINTF-----GRTRQLEQARIAFFKMQDGGIEPDV 457

Query: 198 GTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
            ++ ++ +A  +A +  EAR L  +M   G  P
Sbjct: 458 VSWNSLIDACCKAGQPLEARKLYYKMVNDGCAP 490



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 71/158 (44%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLT---NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
              K++  GL    ++ + +  +L K G T EA  L  ++K  G  P++ A+  ++  Y+
Sbjct: 269 FLEKLQASGLVADRDSYISLMLSLGKHGRTAEAEALLEEMKWYGLRPNLKAYNTLLGGYS 328

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             GQ ++   V   +  +G++ N  TY +LI   A A      ++   +    EM    +
Sbjct: 329 RKGQLQQIDTVKTLLRDTGMSINKITYCLLIDAYARAG-----LMDRLEALYQEMRDCDI 383

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           RPN   Y  +   +    +  +   LL++M+  G  PD
Sbjct: 384 RPNTYMYARMITIYRDTGQWQKGVKLLREMQQAGVTPD 421



 Score = 40.8 bits (94), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 59/150 (39%), Gaps = 34/150 (22%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQG-KEALRVFMRMLASGVAPNAYTYAVLI 164
           AL+  +++K  G  PDVV++T VI+A            R+F  M A GV  +   Y  LI
Sbjct: 195 ALETLSKMKTLGFPPDVVSYTHVIQACRHGVVDIYTGFRLFQEMQAEGVQVDGKVYNDLI 254

Query: 165 ---------------------KGLAAAADGNAKIL---------GDAQKYLMEMVGKGMR 194
                                 GL A  D    ++          +A+  L EM   G+R
Sbjct: 255 FACGQAHKPNEGMFFLEKLQASGLVADRDSYISLMLSLGKHGRTAEAEALLEEMKWYGLR 314

Query: 195 PNAGTYTAVFEAFVRA---QKVDEARGLLQ 221
           PN   Y  +   + R    Q++D  + LL+
Sbjct: 315 PNLKAYNTLLGGYSRKGQLQQIDTVKTLLR 344


>gi|255764587|gb|ACU33853.1| PPR1 protein [Capsicum annuum]
          Length = 577

 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 72/139 (51%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K+G   +A ++   + +KG  PD++ ++A+++ Y   GQ   A RVF  +   G
Sbjct: 279 LIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKG 338

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN ++Y++LI G     +     L  A +   E+  KG++P+  TY+ +    +   +
Sbjct: 339 IKPNIFSYSILINGYCKKKN-----LAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVGR 393

Query: 213 VDEARGLLQQMKAKGFVPD 231
           + +A+ +  +M   G  PD
Sbjct: 394 IGDAKKIFDEMLRVGPTPD 412



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 71/139 (51%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DAL KD     A+ L  ++K K   P++  + ++I+     GQ ++   +   M+   
Sbjct: 209 VIDALCKDINLDAAINLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLN 268

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN +T+++LI GL          + DA + +  M+ KG+ P+  TY+A+ + +    +
Sbjct: 269 INPNVHTFSILIDGLCKEGK-----VEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQ 323

Query: 213 VDEARGLLQQMKAKGFVPD 231
           VD AR +   ++ KG  P+
Sbjct: 324 VDRARRVFNVLRDKGIKPN 342



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 85/196 (43%), Gaps = 28/196 (14%)

Query: 60  FKKVVDEEPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHM 119
           FKK+V E+  +P    E+ +     GL           SK G T + L L   ++     
Sbjct: 155 FKKLVREKICEP---NEVMYGTVMNGL-----------SKRGHTEKTLSLLRIMEQGNTK 200

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
           PDV  ++ VI+A         A+ +   M    + PN +TY  LI GL          LG
Sbjct: 201 PDVRTYSIVIDALCKDINLDAAINLLNEMKQKNIPPNIFTYNSLIDGLCK--------LG 252

Query: 180 DAQK---YLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK 236
             +K    L EMV   + PN  T++ + +   +  KV++A  +++ M  KG  PD     
Sbjct: 253 QWEKVKTLLSEMVNLNINPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPD-IITY 311

Query: 237 EALIDKRGQGFRGVIN 252
            A++D  G   RG ++
Sbjct: 312 SAIMD--GYCLRGQVD 325



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 63/133 (47%), Gaps = 5/133 (3%)

Query: 99  KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAY 158
           K GL  EA+ LF++++      ++  +T VI       + +EA  +F ++ + G+ P+  
Sbjct: 425 KYGLVEEAMLLFSKLERNREDTNISFYTVVINGLCKNDRVREAHAIFEKLPSIGLIPDVR 484

Query: 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218
           TY V+I G          +  + +  L +M   G   N  TY  + + F R+ K+ E   
Sbjct: 485 TYNVMITGFCREG-----LFDEVKGILRKMEDNGCPANNITYNVIMQGFFRSNKISEIVS 539

Query: 219 LLQQMKAKGFVPD 231
            +++M  +GF  D
Sbjct: 540 FMKEMAGRGFSFD 552



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/179 (21%), Positives = 77/179 (43%), Gaps = 16/179 (8%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +F+ +R +G+  N      + +   K     +A+QLF +I  KG  PD V ++ ++  
Sbjct: 328 RRVFNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHG 387

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G+  +A ++F  ML  G  P+   ++ L+ G          ++ +A     ++   
Sbjct: 388 LIEVGRIGDAKKIFDEMLRVGPTPDICLHSTLLFGYFKYG-----LVEEAMLLFSKLERN 442

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA--------VKEALIDK 242
               N   YT V     +  +V EA  + +++ + G +PD +          +E L D+
Sbjct: 443 REDTNISFYTVVINGLCKNDRVREAHAIFEKLPSIGLIPDVRTYNVMITGFCREGLFDE 501



 Score = 43.5 bits (101), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 5/107 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K+    EA  +F ++   G +PDV  +  +I  +   G   E   +  +M  +G
Sbjct: 454 VINGLCKNDRVREAHAIFEKLPSIGLIPDVRTYNVMITGFCREGLFDEVKGILRKMEDNG 513

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGT 199
              N  TY V+++G   +       + +   ++ EM G+G   +A T
Sbjct: 514 CPANNITYNVIMQGFFRSNK-----ISEIVSFMKEMAGRGFSFDATT 555


>gi|223948189|gb|ACN28178.1| unknown [Zea mays]
 gi|413935735|gb|AFW70286.1| hypothetical protein ZEAMMB73_980179 [Zea mays]
          Length = 597

 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 91/181 (50%), Gaps = 9/181 (4%)

Query: 71  PRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P +   +F +M++ G   N      + +A +++GL  +A ++F +++  GH PDV A+ A
Sbjct: 293 PMSSLRVFREMKSVGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNA 352

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           ++EAY+ AG  + A  +F  M   G  P+  +Y +L+        G A +  +A+    E
Sbjct: 353 LMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAF-----GRAGLHQEAEAAFQE 407

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGF 247
           +  +GMRP   ++  +  A  R+  V     ++ Q+   G  PD  A+  A+++  G+  
Sbjct: 408 LKQQGMRPTMKSHMLLLSAHARSGNVARCEEVMAQLHKSGLRPDTFALN-AMLNAYGRAG 466

Query: 248 R 248
           R
Sbjct: 467 R 467



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 79/164 (48%), Gaps = 12/164 (7%)

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E++ +M+ E    N      M +   K      +L++F ++K  G  P++  +TA++ A+
Sbjct: 263 EVYQRMKKERCRTNTETYTLMINVYGKANQPMSSLRVFREMKSVGCKPNICTYTALVNAF 322

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA--DGNAKILGDAQKYLMEMVG 190
           A  G  ++A  VF  M  +G  P+ Y Y  L++  + A    G ++I       LME + 
Sbjct: 323 AREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFS-----LMEHM- 376

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
            G  P+  +Y  + +AF RA    EA    Q++K +G  P  K+
Sbjct: 377 -GCEPDRASYNILVDAFGRAGLHQEAEAAFQELKQQGMRPTMKS 419



 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 68/152 (44%), Gaps = 6/152 (3%)

Query: 94  FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGV 153
            D L K   + +A++++ ++K +    +   +T +I  Y  A Q   +LRVF  M + G 
Sbjct: 249 LDGLLKARCSEKAVEVYQRMKKERCRTNTETYTLMINVYGKANQPMSSLRVFREMKSVGC 308

Query: 154 APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV 213
            PN  TY  L+   A        +   A++   EM   G  P+   Y A+ EA+ RA   
Sbjct: 309 KPNICTYTALVNAFA-----REGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLP 363

Query: 214 DEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
             A  +   M+  G  PD +A    L+D  G+
Sbjct: 364 QGASEIFSLMEHMGCEPD-RASYNILVDAFGR 394



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 5/105 (4%)

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
           PD++ +  +I+AY    Q  EA   +M +L +   P   TYA+L++    +       L 
Sbjct: 170 PDIICYNLLIDAYGQKRQLSEAEAAYMALLEARCVPTEDTYALLLRAYCGSGQ-----LH 224

Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            A+  + EM   G+ P A  Y A  +  ++A+  ++A  + Q+MK
Sbjct: 225 RAEGVISEMQRNGIPPTATVYNAYLDGLLKARCSEKAVEVYQRMK 269



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 73/166 (43%), Gaps = 12/166 (7%)

Query: 78  FHKMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F +++ +G+     + + +  A ++ G      ++ AQ+   G  PD  A  A++ AY  
Sbjct: 405 FQELKQQGMRPTMKSHMLLLSAHARSGNVARCEEVMAQLHKSGLRPDTFALNAMLNAYGR 464

Query: 135 AGQGKEALRVFMRML----ASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
           AG+  +  R+F  M     A   AP+  TY V++      A G A  L   +     +  
Sbjct: 465 AGRLDDMERLFAAMERGDGAIAGAPDTSTYNVMVN-----AYGRAGYLDRMEAAFRSLAA 519

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK 236
           +G+  +  T+T+   A+ R ++  +   + ++M   G  PD    K
Sbjct: 520 RGLAADVVTWTSRIGAYARKKEYGQCLRVFEEMVDAGCYPDAGTAK 565



 Score = 43.1 bits (100), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 61/169 (36%), Gaps = 30/169 (17%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DA  +     EA   +  + +   +P    +  ++ AY  +GQ   A  V   M  +G
Sbjct: 178 LIDAYGQKRQLSEAEAAYMALLEARCVPTEDTYALLLRAYCGSGQLHRAEGVISEMQRNG 237

Query: 153 VAPNAYTYAVLIKGLAAA------------------------------ADGNAKILGDAQ 182
           + P A  Y   + GL  A                                G A     + 
Sbjct: 238 IPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTETYTLMINVYGKANQPMSSL 297

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +   EM   G +PN  TYTA+  AF R    ++A  + ++M+  G  PD
Sbjct: 298 RVFREMKSVGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPD 346



 Score = 40.8 bits (94), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 3/80 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M +A  + G        F  +  +G   DVV  T+ I AYA   +  + LRVF  M+ +G
Sbjct: 497 MVNAYGRAGYLDRMEAAFRSLAARGLAADVVTWTSRIGAYARKKEYGQCLRVFEEMVDAG 556

Query: 153 VAPNAYTYAVLIKGLAAAAD 172
             P+A T  VL   LAA +D
Sbjct: 557 CYPDAGTAKVL---LAACSD 573


>gi|359481393|ref|XP_002276762.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Vitis vinifera]
          Length = 625

 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 78/165 (47%), Gaps = 8/165 (4%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D   + EI   M  EG+  N V    +    S  G   EA +LF ++++KG   DV  +T
Sbjct: 275 DLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYT 334

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
           ++I     +G  K AL +F  M   G+ P+A+TY  LI G+  A    A     AQ  + 
Sbjct: 335 SIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEA-----AQMLVN 389

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           EM GKG+  N   +  + + +  +  VDEA  L   M+ KG   D
Sbjct: 390 EMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESD 434



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 74/140 (52%), Gaps = 5/140 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   K+G   EA ++F ++++KG++P+++ +  +I+ Y+  G  KEA ++   +   G
Sbjct: 476 LIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRG 535

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+ YT   LI G     DG   +   A K   EM  +G+ PN  TYTA+     +  +
Sbjct: 536 LIPDVYTCTSLIHG--ECIDGKVDM---ALKLFDEMPQRGLVPNVVTYTAMISGLSKDGR 590

Query: 213 VDEARGLLQQMKAKGFVPDE 232
            +EA  L  +MK  G  PD+
Sbjct: 591 SEEAFKLYDEMKETGLTPDD 610



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 77/160 (48%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           Q + ++M+ +G+  N V    + D   + G+  EAL+L   ++ KG   DV A+ ++   
Sbjct: 385 QMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASG 444

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
                +  EA  +   M+  GV+PN  ++  LI       +GN     +A++   EM  K
Sbjct: 445 LCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLID--IYCKEGN---FVEAKRVFREMEEK 499

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G  PN  TY  + + + +   + EA  L  +++ +G +PD
Sbjct: 500 GNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPD 539



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 62/127 (48%), Gaps = 5/127 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA  L   + ++G  P+ ++ T +I+ Y   G   EA RVF  M   G  PN  TY VLI
Sbjct: 453 EAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLI 512

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            G +    GN K   +A K   E+  +G+ P+  T T++        KVD A  L  +M 
Sbjct: 513 DGYSKR--GNMK---EAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMP 567

Query: 225 AKGFVPD 231
            +G VP+
Sbjct: 568 QRGLVPN 574



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 70/174 (40%), Gaps = 34/174 (19%)

Query: 92  KMFDAL----SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMR 147
           K FD L    + + +  EAL+ F  ++ KG   D  +    + A    GQ    LR F R
Sbjct: 156 KFFDLLFRVYADNKMFGEALEAFEHMEKKGFHIDERSCLVYLLALRRGGQVDSCLRFFRR 215

Query: 148 MLASGVAPNAYTYAVLIKGLA--------------AAADG--------NAKI-------- 177
           M+   V    Y+  +++ GL                AA G        NA I        
Sbjct: 216 MVNLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLD 275

Query: 178 LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           LG   + L  M  +G+  N  TYT +   F    K++EA+ L ++M+ KG   D
Sbjct: 276 LGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEAD 329



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 43/71 (60%)

Query: 100 DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYT 159
           DG    AL+LF ++  +G +P+VV +TA+I   +  G+ +EA +++  M  +G+ P+   
Sbjct: 553 DGKVDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDDTV 612

Query: 160 YAVLIKGLAAA 170
           Y+ L+  L +A
Sbjct: 613 YSSLVGSLHSA 623



 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 3/63 (4%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F +M   GL  N V    M   LSKDG + EA +L+ ++K+ G  PD   +++++ + 
Sbjct: 561 KLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDDTVYSSLVGSL 620

Query: 133 ASA 135
            SA
Sbjct: 621 HSA 623


>gi|297741630|emb|CBI32762.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 78/165 (47%), Gaps = 8/165 (4%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D   + EI   M  EG+  N V    +    S  G   EA +LF ++++KG   DV  +T
Sbjct: 279 DLGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYT 338

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
           ++I     +G  K AL +F  M   G+ P+A+TY  LI G+  A    A     AQ  + 
Sbjct: 339 SIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEA-----AQMLVN 393

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           EM GKG+  N   +  + + +  +  VDEA  L   M+ KG   D
Sbjct: 394 EMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESD 438



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 74/140 (52%), Gaps = 5/140 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   K+G   EA ++F ++++KG++P+++ +  +I+ Y+  G  KEA ++   +   G
Sbjct: 480 LIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRG 539

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+ YT   LI G     DG   +   A K   EM  +G+ PN  TYTA+     +  +
Sbjct: 540 LIPDVYTCTSLIHG--ECIDGKVDM---ALKLFDEMPQRGLVPNVVTYTAMISGLSKDGR 594

Query: 213 VDEARGLLQQMKAKGFVPDE 232
            +EA  L  +MK  G  PD+
Sbjct: 595 SEEAFKLYDEMKETGLTPDD 614



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 77/160 (48%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           Q + ++M+ +G+  N V    + D   + G+  EAL+L   ++ KG   DV A+ ++   
Sbjct: 389 QMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASG 448

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
                +  EA  +   M+  GV+PN  ++  LI       +GN     +A++   EM  K
Sbjct: 449 LCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLID--IYCKEGN---FVEAKRVFREMEEK 503

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G  PN  TY  + + + +   + EA  L  +++ +G +PD
Sbjct: 504 GNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPD 543



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 64/136 (47%), Gaps = 5/136 (3%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K     EA  L   + ++G  P+ ++ T +I+ Y   G   EA RVF  M   G  P
Sbjct: 448 GLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVP 507

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           N  TY VLI G +    GN K   +A K   E+  +G+ P+  T T++        KVD 
Sbjct: 508 NIITYNVLIDGYSKR--GNMK---EAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDM 562

Query: 216 ARGLLQQMKAKGFVPD 231
           A  L  +M  +G VP+
Sbjct: 563 ALKLFDEMPQRGLVPN 578



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 70/174 (40%), Gaps = 34/174 (19%)

Query: 92  KMFDAL----SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMR 147
           K FD L    + + +  EAL+ F  ++ KG   D  +    + A    GQ    LR F R
Sbjct: 160 KFFDLLFRVYADNKMFGEALEAFEHMEKKGFHIDERSCLVYLLALRRGGQVDSCLRFFRR 219

Query: 148 MLASGVAPNAYTYAVLIKGLA--------------AAADG--------NAKI-------- 177
           M+   V    Y+  +++ GL                AA G        NA I        
Sbjct: 220 MVNLDVEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLD 279

Query: 178 LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           LG   + L  M  +G+  N  TYT +   F    K++EA+ L ++M+ KG   D
Sbjct: 280 LGGVAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEAD 333



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 43/71 (60%)

Query: 100 DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYT 159
           DG    AL+LF ++  +G +P+VV +TA+I   +  G+ +EA +++  M  +G+ P+   
Sbjct: 557 DGKVDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDDTV 616

Query: 160 YAVLIKGLAAA 170
           Y+ L+  L +A
Sbjct: 617 YSSLVGSLHSA 627



 Score = 40.0 bits (92), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 3/65 (4%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F +M   GL  N V    M   LSKDG + EA +L+ ++K+ G  PD   +++++ + 
Sbjct: 565 KLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDDTVYSSLVGSL 624

Query: 133 ASAGQ 137
            SA +
Sbjct: 625 HSADE 629


>gi|356518209|ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Glycine max]
          Length = 1113

 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 82/165 (49%), Gaps = 8/165 (4%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D   + ++  +M T GL  N          L + G   +A  +   ++D+G  PDVV +T
Sbjct: 242 DTGTIMDLLEEMETLGLRPNIYTYTICIRVLGRAGRIDDAYGILKTMEDEGCGPDVVTYT 301

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
            +I+A  +AG+  +A  ++ +M AS   P+  TY  L+        GN   L   +++  
Sbjct: 302 VLIDALCAAGKLDKAKELYTKMRASSHKPDLVTYITLMSKF-----GNYGDLETVKRFWS 356

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           EM   G  P+  TYT + EA  ++ KVD+A  +L  M+ +G VP+
Sbjct: 357 EMEADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVMRVRGIVPN 401



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 73/144 (50%), Gaps = 5/144 (3%)

Query: 88  NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMR 147
           N  + +F ALS  G   +A     +++  G + +  ++  +I      G  KEAL+V+ R
Sbjct: 158 NTYLTIFKALSIKGGIRQAPFALGKMRQAGFVLNAYSYNGLIYFLLQPGFCKEALKVYKR 217

Query: 148 MLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAF 207
           M++ G+ P+  TY+ L+  L     G  +  G     L EM   G+RPN  TYT      
Sbjct: 218 MISEGLKPSMKTYSALMVAL-----GRRRDTGTIMDLLEEMETLGLRPNIYTYTICIRVL 272

Query: 208 VRAQKVDEARGLLQQMKAKGFVPD 231
            RA ++D+A G+L+ M+ +G  PD
Sbjct: 273 GRAGRIDDAYGILKTMEDEGCGPD 296



 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 8/161 (4%)

Query: 74  LQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           L E++++M   G   N +    +  AL K    ++AL L+ +I      P    +  +I 
Sbjct: 842 LFELYNEMLCRGCKPNIITHNIIISALVKSNSINKALDLYYEIISGDFSPTPCTYGPLIG 901

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
               AG+ +EA+++F  M      PN   Y +LI G   A  GN  I  D  K    M+ 
Sbjct: 902 GLLKAGRSEEAMKIFEEMPDYQCKPNCAIYNILINGFGKA--GNVNIACDLFK---RMIK 956

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +G+RP+  +YT + E      +VD+A    +++K  G  PD
Sbjct: 957 EGIRPDLKSYTILVECLFMTGRVDDAVHYFEELKLTGLDPD 997



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 72/157 (45%), Gaps = 8/157 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           I   M  EG   + V    + DAL   G   +A +L+ +++   H PD+V +  ++  + 
Sbjct: 284 ILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMRASSHKPDLVTYITLMSKFG 343

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
           + G  +   R +  M A G AP+  TY +L++ L  +       +  A   L  M  +G+
Sbjct: 344 NYGDLETVKRFWSEMEADGYAPDVVTYTILVEALCKSGK-----VDQAFDMLDVMRVRGI 398

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
            PN  TY  +    +  +++DEA  L   M++ G  P
Sbjct: 399 VPNLHTYNTLISGLLNLRRLDEALELFNNMESLGVAP 435



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 78/158 (49%), Gaps = 8/158 (5%)

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F+ M + G+   A   V   D   K G   +AL  F ++K +G MP + A  A + + 
Sbjct: 423 ELFNNMESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKRGIMPSIAACNASLYSL 482

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           A  G+ +EA  +F  +   G++P++ TY +++K  + A       +  A K L EM+ +G
Sbjct: 483 AEMGRIREAKDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQ-----IDKATKLLTEMLSEG 537

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
             P+     ++ +   +A +VDEA  +  ++K     P
Sbjct: 538 CEPDIIVVNSLIDTLYKAGRVDEAWQMFGRLKDLKLAP 575



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 8/159 (5%)

Query: 76   EIFHKMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
            ++F +M  EG+     +   + + L   G   +A+  F ++K  G  PD V++  +I   
Sbjct: 949  DLFKRMIKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEELKLTGLDPDTVSYNLMINGL 1008

Query: 133  ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              + + +EAL +F  M   G++P  YTY  LI        GNA ++  A K   E+   G
Sbjct: 1009 GKSRRLEEALSLFSEMKNRGISPELYTYNALILHF-----GNAGMVDQAGKMFEELQFMG 1063

Query: 193  MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            + PN  TY A+     ++   D A  + ++M   G  P+
Sbjct: 1064 LEPNVFTYNALIRGHSKSGNKDRAFSVFKKMMIVGCSPN 1102



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 74/163 (45%), Gaps = 8/163 (4%)

Query: 72  RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R  ++IF+ +   GL+ ++V    M    SK G   +A +L  ++  +G  PD++   ++
Sbjct: 489 REAKDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPDIIVVNSL 548

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I+    AG+  EA ++F R+    +AP   TY +LI GL     G    L  A      M
Sbjct: 549 IDTLYKAGRVDEAWQMFGRLKDLKLAPTVVTYNILITGL-----GKEGKLLKALDLFGSM 603

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              G  PN  T+ A+ +   +   VD A  +  +M      PD
Sbjct: 604 KESGCPPNTVTFNALLDCLCKNDAVDLALKMFCRMTIMNCSPD 646



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 81/169 (47%), Gaps = 10/169 (5%)

Query: 75  QEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQ----LFAQIKDKGHMPDVVAHTAVIE 130
           +E++ KMR      + V     +SK G  +  L+     +++++  G+ PDVV +T ++E
Sbjct: 317 KELYTKMRASSHKPDLVTYITLMSKFG-NYGDLETVKRFWSEMEADGYAPDVVTYTILVE 375

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
           A   +G+  +A  +   M   G+ PN +TY  LI GL      N + L +A +    M  
Sbjct: 376 ALCKSGKVDQAFDMLDVMRVRGIVPNLHTYNTLISGLL-----NLRRLDEALELFNNMES 430

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
            G+ P A +Y    + + +    ++A    ++MK +G +P   A   +L
Sbjct: 431 LGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKRGIMPSIAACNASL 479



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 67/126 (53%), Gaps = 8/126 (6%)

Query: 78   FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
            F +++  GL  + V    M + L K     EAL LF+++K++G  P++  + A+I  + +
Sbjct: 986  FEELKLTGLDPDTVSYNLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYNALILHFGN 1045

Query: 135  AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            AG   +A ++F  +   G+ PN +TY  LI+G + + + +      A     +M+  G  
Sbjct: 1046 AGMVDQAGKMFEELQFMGLEPNVFTYNALIRGHSKSGNKDR-----AFSVFKKMMIVGCS 1100

Query: 195  PNAGTY 200
            PNAGT+
Sbjct: 1101 PNAGTF 1106



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 70/172 (40%), Gaps = 30/172 (17%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L    +T  AL+LF ++K+ G  P++  +  +++A+  + +  E   ++  ML  G
Sbjct: 794 LMDGLLGCNITEAALKLFVEMKNAGCCPNIFTYNLLLDAHGKSKRIDELFELYNEMLCRG 853

Query: 153 VAPNAYTYAVLIKGLAAAADGNAK-------ILGD-----------------------AQ 182
             PN  T+ ++I  L  +   N         I GD                       A 
Sbjct: 854 CKPNIITHNIIISALVKSNSINKALDLYYEIISGDFSPTPCTYGPLIGGLLKAGRSEEAM 913

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
           K   EM     +PN   Y  +   F +A  V+ A  L ++M  +G  PD K+
Sbjct: 914 KIFEEMPDYQCKPNCAIYNILINGFGKAGNVNIACDLFKRMIKEGIRPDLKS 965



 Score = 60.5 bits (145), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 94/205 (45%), Gaps = 34/205 (16%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D   ++  + +M  +G   + V    + +AL K G   +A  +   ++ +G +P++  + 
Sbjct: 347 DLETVKRFWSEMEADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVMRVRGIVPNLHTYN 406

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI---------------------K 165
            +I    +  +  EAL +F  M + GVAP AY+Y + I                     +
Sbjct: 407 TLISGLLNLRRLDEALELFNNMESLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKR 466

Query: 166 GLA-AAADGNAKI--------LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
           G+  + A  NA +        + +A+    ++   G+ P++ TY  + + + +A ++D+A
Sbjct: 467 GIMPSIAACNASLYSLAEMGRIREAKDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQIDKA 526

Query: 217 RGLLQQMKAKGFVPDEKAVKEALID 241
             LL +M ++G  PD   V  +LID
Sbjct: 527 TKLLTEMLSEGCEPDIIVVN-SLID 550



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 73/156 (46%), Gaps = 14/156 (8%)

Query: 84  EGLTNNAVKMFD--------ALSKDGLTHEALQLFAQI-KDKGHMPDVVAHTAVIEAYAS 134
           EGL  N++   D         L K     +A +LF +  K  G  P   ++  +++    
Sbjct: 741 EGLVCNSICQDDNLILPLIRVLCKQKKALDAKKLFDKFTKSLGTHPTPESYNCLMDGLLG 800

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
               + AL++F+ M  +G  PN +TY +L+      A G +K + +  +   EM+ +G +
Sbjct: 801 CNITEAALKLFVEMKNAGCCPNIFTYNLLLD-----AHGKSKRIDELFELYNEMLCRGCK 855

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           PN  T+  +  A V++  +++A  L  ++ +  F P
Sbjct: 856 PNIITHNIIISALVKSNSINKALDLYYEIISGDFSP 891



 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 53/100 (53%), Gaps = 10/100 (10%)

Query: 72   RNLQE---IFHKMRTEGL-----TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVV 123
            R L+E   +F +M+  G+     T NA+ +       G+  +A ++F +++  G  P+V 
Sbjct: 1012 RRLEEALSLFSEMKNRGISPELYTYNALIL--HFGNAGMVDQAGKMFEELQFMGLEPNVF 1069

Query: 124  AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
             + A+I  ++ +G    A  VF +M+  G +PNA T+A L
Sbjct: 1070 TYNALIRGHSKSGNKDRAFSVFKKMMIVGCSPNAGTFAQL 1109


>gi|410109919|gb|AFV61039.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           duartei]
          Length = 412

 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 111/237 (46%), Gaps = 15/237 (6%)

Query: 2   AATAILRWLLHSPSPKRS-LRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPF 60
           +A+A+   +L +   +RS + + +  + A L+      + +  +  +  + K   P+D  
Sbjct: 34  SASAVFAAILETKGTQRSDIYVFSGLIAAYLESGFLRDAIECYR--LTREHKFWVPFDTC 91

Query: 61  KKVVDEEPTDPRNLQEI--FHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIK 114
           +KV+ E     +  + +  F++   E     ++  F+ L     KDG    A  +F  I 
Sbjct: 92  RKVL-EHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAIT 150

Query: 115 DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174
             G  P VV++  ++  Y   G   E   +   MLASGV P+ YTY+VLI GL   +   
Sbjct: 151 KWGLRPSVVSYNTLMNGYIRXGDLDEGFXLKSXMLASGVQPDVYTYSVLINGLCKESK-- 208

Query: 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              + DA +   EM+ KG+ PN  T+T + +   +  +VD A  + +QM ++   PD
Sbjct: 209 ---MDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 262



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 84/201 (41%), Gaps = 35/201 (17%)

Query: 63  VVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM 119
           +  E   D  N  E+F +M  +GL  N V    + D   K+G    A++++ Q+  +   
Sbjct: 203 LCKESKMDDAN--ELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 260

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN----- 174
           PD++ +  +I      G  K+A  +   M   G+ P+  TY  LI G     D +     
Sbjct: 261 PDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLINGCCKEGDLDSAFEH 320

Query: 175 -----------------AKILG--------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
                            A I G        DA+K L EM+  G++P+A TYT +   F +
Sbjct: 321 RKRMIQENIRLDEVAYTALISGXCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCK 380

Query: 210 AQKVDEARGLLQQMKAKGFVP 230
              V     LL++M+  G VP
Sbjct: 381 XGDVWXGSKLLKEMQRDGHVP 401



 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 76/158 (48%), Gaps = 6/158 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K+    +A +LF ++  KG +P+ V  T +I+ +   G+   A+ ++ +ML+  
Sbjct: 199 LINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQS 258

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           ++P+  TY  LI GL    D     L  A   + EM  KG++P+  TYT +     +   
Sbjct: 259 LSPDLITYNTLIYGLCKKGD-----LKQAHHLIDEMSVKGLKPDKITYTTLINGCCKEGD 313

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGV 250
           +D A    ++M  +    DE A   ALI    Q  R V
Sbjct: 314 LDSAFEHRKRMIQENIRLDEVAYT-ALISGXCQEGRSV 350


>gi|297723907|ref|NP_001174317.1| Os05g0275100 [Oryza sativa Japonica Group]
 gi|255676205|dbj|BAH93045.1| Os05g0275100, partial [Oryza sativa Japonica Group]
          Length = 213

 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 76/153 (49%), Gaps = 8/153 (5%)

Query: 81  MRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ 137
           M + GLT N +    +   L K G    A+ LF +++ KG  P+ + +  +I+ Y   G+
Sbjct: 35  MLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGK 94

Query: 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA 197
             EA ++  +M+  G+ P   TY++LI GL          + +A K L +M+   + PN 
Sbjct: 95  TTEAFKLKQKMVEEGIQPTVITYSILIYGLCTQG-----YMEEAIKLLDQMIENNVDPNY 149

Query: 198 GTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
            TY  +   ++++  ++E   L  +M  +G +P
Sbjct: 150 ITYCTLIHGYIKSGNMEEISKLYDEMHIRGLLP 182



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 5/117 (4%)

Query: 114 KDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADG 173
           ++K  +PD   ++++I   A++G   EA  +   ML++G+ PN  TY  LI GL  +   
Sbjct: 1   RNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGK- 59

Query: 174 NAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
               L  A     ++  KG+ PN  TY  + + + +  K  EA  L Q+M  +G  P
Sbjct: 60  ----LSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGIQP 112



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 62/139 (44%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +    +  G   EA  L   +   G  P+++ + ++I     +G+   A+ +F ++ + G
Sbjct: 15  LIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKG 74

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           ++PN  TY  LI       +G      +A K   +MV +G++P   TY+ +         
Sbjct: 75  ISPNGITYNTLID--EYCKEGKTT---EAFKLKQKMVEEGIQPTVITYSILIYGLCTQGY 129

Query: 213 VDEARGLLQQMKAKGFVPD 231
           ++EA  LL QM      P+
Sbjct: 130 MEEAIKLLDQMIENNVDPN 148



 Score = 41.6 bits (96), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 6/88 (6%)

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
           P+ +TY+ LI G AA+       + +A      M+  G+ PN  TY ++     ++ K+ 
Sbjct: 7   PDNFTYSSLIHGCAASGS-----IDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLS 61

Query: 215 EARGLLQQMKAKGFVPDEKAVKEALIDK 242
            A  L  ++++KG  P+       LID+
Sbjct: 62  RAVNLFNKLQSKGISPN-GITYNTLIDE 88


>gi|226507918|ref|NP_001144813.1| uncharacterized protein LOC100277891 [Zea mays]
 gi|195647376|gb|ACG43156.1| hypothetical protein [Zea mays]
          Length = 597

 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 91/181 (50%), Gaps = 9/181 (4%)

Query: 71  PRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P +   +F +M++ G   N      + +A +++GL  +A ++F +++  GH PDV A+ A
Sbjct: 293 PMSSLRVFREMKSVGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNA 352

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           ++EAY+ AG  + A  +F  M   G  P+  +Y +L+        G A +  +A+    E
Sbjct: 353 LMEAYSRAGLPQGASEIFSLMEHMGCEPDRASYNILVDAF-----GRAGLHQEAEAAFQE 407

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGF 247
           +  +GMRP   ++  +  A  R+  V     ++ Q+   G  PD  A+  A+++  G+  
Sbjct: 408 LKQQGMRPTMKSHMLLLSAHARSGNVARCEEVMAQLHKSGLRPDTFALN-AMLNAYGRAG 466

Query: 248 R 248
           R
Sbjct: 467 R 467



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 79/164 (48%), Gaps = 12/164 (7%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E++ +M+ E    N      M +   K      +L++F ++K  G  P++  +TA++ A+
Sbjct: 263 EVYQRMKKERCRTNTZTYXLMINVYGKANQPMSSLRVFREMKSVGCKPNICTYTALVNAF 322

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA--DGNAKILGDAQKYLMEMVG 190
           A  G  ++A  VF  M  +G  P+ Y Y  L++  + A    G ++I       LME + 
Sbjct: 323 AREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFS-----LMEHM- 376

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
            G  P+  +Y  + +AF RA    EA    Q++K +G  P  K+
Sbjct: 377 -GCEPDRASYNILVDAFGRAGLHQEAEAAFQELKQQGMRPTMKS 419



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 67/152 (44%), Gaps = 6/152 (3%)

Query: 94  FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGV 153
            D L K   + +A++++ ++K +    +   +  +I  Y  A Q   +LRVF  M + G 
Sbjct: 249 LDGLLKARCSEKAVEVYQRMKKERCRTNTZTYXLMINVYGKANQPMSSLRVFREMKSVGC 308

Query: 154 APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV 213
            PN  TY  L+   A        +   A++   EM   G  P+   Y A+ EA+ RA   
Sbjct: 309 KPNICTYTALVNAFA-----REGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLP 363

Query: 214 DEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
             A  +   M+  G  PD +A    L+D  G+
Sbjct: 364 QGASEIFSLMEHMGCEPD-RASYNILVDAFGR 394



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 74/166 (44%), Gaps = 12/166 (7%)

Query: 78  FHKMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F +++ +G+     + + +  A ++ G      ++ AQ+   G  PD  A  A++ AY  
Sbjct: 405 FQELKQQGMRPTMKSHMLLLSAHARSGNVARCEEVMAQLHKSGLRPDTFALNAMLNAYGR 464

Query: 135 AGQGKEALRVFMRML----ASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
           AG+  +  R+F  M     AS  AP+  TY VL+      A G A  L   +     +  
Sbjct: 465 AGRLDDMERLFAAMERGDGASAGAPDTSTYNVLVN-----AYGRAGYLDRMEAAFRSLAA 519

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK 236
           +G+  +  T+T+   A+ R ++  +   + ++M   G  PD    K
Sbjct: 520 RGLAADVVTWTSRIGAYARKKEYGQCLRVFEEMVDAGCYPDAGTAK 565



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 5/105 (4%)

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
           PD++ +  +I+AY    Q  EA   +M +L +   P   TYA+L++    +       L 
Sbjct: 170 PDIICYNLLIDAYGQKRQLSEAEAAYMALLEARCVPTEDTYALLLRAYCGSGQ-----LH 224

Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            A+  + EM   G+ P A  Y A  +  ++A+  ++A  + Q+MK
Sbjct: 225 RAEGVISEMQRNGIPPTATVYNAYLDGLLKARCSEKAVEVYQRMK 269



 Score = 43.5 bits (101), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 37/169 (21%), Positives = 62/169 (36%), Gaps = 30/169 (17%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DA  +     EA   +  + +   +P    +  ++ AY  +GQ   A  V   M  +G
Sbjct: 178 LIDAYGQKRQLSEAEAAYMALLEARCVPTEDTYALLLRAYCGSGQLHRAEGVISEMQRNG 237

Query: 153 VAPNAYTYAVLIKGLAAAADGN-----------AKILGDAQKYLM--------------- 186
           + P A  Y   + GL  A                +   + Z Y +               
Sbjct: 238 IPPTATVYNAYLDGLLKARCSEKAVEVYQRMKKERCRTNTZTYXLMINVYGKANQPMSSL 297

Query: 187 ----EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
               EM   G +PN  TYTA+  AF R    ++A  + ++M+  G  PD
Sbjct: 298 RVFREMKSVGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPD 346



 Score = 39.7 bits (91), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 3/80 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +A  + G        F  +  +G   DVV  T+ I AYA   +  + LRVF  M+ +G
Sbjct: 497 LVNAYGRAGYLDRMEAAFRSLAARGLAADVVTWTSRIGAYARKKEYGQCLRVFEEMVDAG 556

Query: 153 VAPNAYTYAVLIKGLAAAAD 172
             P+A T  VL   LAA +D
Sbjct: 557 CYPDAGTAKVL---LAACSD 573


>gi|410109891|gb|AFV61025.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           cujabensis]
          Length = 409

 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 113/239 (47%), Gaps = 19/239 (7%)

Query: 2   AATAILRWLLHSPSPKRS-LRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPF 60
           +A+A+   +L +   +RS + + +  + A L+      + +  +  +  + KL  P+D  
Sbjct: 49  SASAVFAAVLETKGNQRSDIYVFSGLITAYLESGFLRDAIECYR--LTXEHKLWVPFDTC 106

Query: 61  KKVVDEEPTDPRNLQEI--FHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIK 114
           +KV+ E     +  + +  F++   E     ++  F+ L     KDG    A  +F  I 
Sbjct: 107 RKVL-EHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAIT 165

Query: 115 DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA--AAAD 172
             G  P VV++  ++  Y   G   E  R+   MLASG  P+ YTY+VLI GL   +  D
Sbjct: 166 KWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGXXPDVYTYSVLINGLCKESKMD 225

Query: 173 GNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G       A +   EM+ KG+ PN  T+T + +   +  +VD A  + +QM ++  +PD
Sbjct: 226 G-------ANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPD 277



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 83/194 (42%), Gaps = 35/194 (18%)

Query: 63  VVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM 119
           +  E   D  N  E+F +M  +GL  N V    + D   K+G    A++++ Q+  +  +
Sbjct: 218 LCKESKMDGAN--ELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLL 275

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN----- 174
           PD++ +  +I      G  K+A  +   M   G+ P+ +TY  LI G     D +     
Sbjct: 276 PDLITYNTLIYGLCKKGDLKQAHDLIDEMSXKGLKPDKFTYTTLIDGCCKEGDLDTAFXH 335

Query: 175 -----------------AKILG--------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
                            A I G        DA+K L EM+  G+ P+AGTYT +   F +
Sbjct: 336 RKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLXPDAGTYTMIINEFCK 395

Query: 210 AQKVDEARGLLQQM 223
              V +   LL++M
Sbjct: 396 KGDVWKGSKLLKEM 409


>gi|302818229|ref|XP_002990788.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
 gi|300141349|gb|EFJ08061.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
          Length = 624

 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 69/139 (49%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L +     +A QL  ++K+ G +PD   + A+I  Y+ A    +A +    M+ + 
Sbjct: 16  LLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNH 75

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P   TY  ++ GL  A  G  K   DA K L EM  KG  PN  TY  + E     +K
Sbjct: 76  CLPTVVTYTNIVDGLCKA--GRTK---DAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERK 130

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +DEA+ +L++M  +G+ PD
Sbjct: 131 LDEAKKMLEEMAVRGYFPD 149



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 70/139 (50%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K G    A ++  Q+ ++G  PDVV ++++I+ +   G+ + A+ +   ML  G
Sbjct: 188 VINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLG 247

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN   Y  L+  L          +G A+  L+EM  +G  P+  +Y A  +   +A++
Sbjct: 248 CRPNMVAYNSLLGALHRLGH-----IGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAER 302

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V +A+ +  +M  +G  P+
Sbjct: 303 VKKAKAVFDRMVERGCTPN 321



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 73/154 (47%), Gaps = 9/154 (5%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K G T +A++L  +++DKG  P++  +  ++E      +  EA ++   M   G
Sbjct: 86  IVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRG 145

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  TY   IKGL          + +A+K+L  M    + P+  +YT V     ++  
Sbjct: 146 YFPDVVTYNSFIKGLC-----KCDRVDEARKFLARM---PVTPDVVSYTTVINGLCKSGD 197

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
           +D A  +L QM  +G  PD      +LID   +G
Sbjct: 198 LDSASRMLDQMTNRGCTPD-VVTYSSLIDGFCKG 230



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 77/159 (48%), Gaps = 11/159 (6%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++  +MR +G + N      + + L ++    EA ++  ++  +G+ PDVV + + I+  
Sbjct: 101 KLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGL 160

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               +  EA +   RM    V P+  +Y  +I GL  + D     L  A + L +M  +G
Sbjct: 161 CKCDRVDEARKFLARM---PVTPDVVSYTTVINGLCKSGD-----LDSASRMLDQMTNRG 212

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             P+  TY+++ + F +  +V+ A GLL  M   G  P+
Sbjct: 213 CTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPN 251



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 92/226 (40%), Gaps = 45/226 (19%)

Query: 60  FKKVVDEEPTDP---------------RNLQEIF--HKMRTEGLTNNAVK---MFDALSK 99
           F KV+DE+  +P               R + +    HK   E    N V    +   L  
Sbjct: 380 FSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLERNCCNVVTWNILVHGLCV 439

Query: 100 DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYT 159
           D    +A  +   + D+G +PD V +  +++A    G+   AL +F   +  G  P+  T
Sbjct: 440 DDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVT 499

Query: 160 YAVLIKGLA---------------AAADGNAKILGDAQ--------KYLMEMVGKGMRPN 196
           Y+ LI GL                  A  NA ILG A+        K  +E++   + PN
Sbjct: 500 YSALITGLVHENMAEEAYLLFTKLDVALWNAMILGYAENGSGDLGLKLFVELIESDVEPN 559

Query: 197 AGTY-TAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           A T+   +    V+A+ + +ARGL  +    GF PD   V   LID
Sbjct: 560 ARTFGKEISGKLVKAESLGKARGLFDRAVKGGFFPD-LFVANTLID 604



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 68/144 (47%), Gaps = 11/144 (7%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +  AL + G   +A  +  +++ +G  PDVV++ A I+    A + K+A  VF RM+  G
Sbjct: 258 LLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERG 317

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PNA +Y++L++ L        K L DA   + +   K    +   YT + +   +  +
Sbjct: 318 CTPNASSYSMLVEELC-----KKKELDDAITLVEQAREKYQIVDILLYTVLLDGLCKGGR 372

Query: 213 VDEARGLLQQMKAKGFVPDEKAVK 236
            DEA  L  +      V DEK  +
Sbjct: 373 FDEACALFSK------VLDEKICE 390



 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
           M+ K  +P+A T+  +     R+ ++++AR LL +MK  G VPD+ A+  ALI
Sbjct: 1   MIDKSCQPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDD-AIYNALI 52


>gi|255660872|gb|ACU25605.1| pentatricopeptide repeat-containing protein [Verbena officinalis]
          Length = 484

 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 12/168 (7%)

Query: 78  FHKMRTEGL-----TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           F+KM +EG+     T N   M       G    A + F  +K +   PDVV +  +I  Y
Sbjct: 138 FNKMLSEGIEPTRHTFNV--MIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGY 195

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               + +EA + F+ M    + P   TY  LIKG  +        + DA + + EM G G
Sbjct: 196 YRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQ-----VDDALRLVZEMKGXG 250

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
           ++PNA TY+ +      A+K+ EAR JL++M  K   P + ++   LI
Sbjct: 251 IKPNAITYSTLLPGLCNAEKMSEARVJLKEMMDKYLAPTDNSIFMRLI 298



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 82/171 (47%), Gaps = 30/171 (17%)

Query: 91  VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           V M D+  K+G+  E++++F ++++      + ++ A+ +     G+   A R F +ML+
Sbjct: 84  VMMIDSYGKEGIVQESVKMFQKMEELXVERTIKSYNALFKVILRRGRYMMAKRYFNKMLS 143

Query: 151 SGVAPNAYTYAVLIKGLAAAA----------------------------DGNAKI--LGD 180
            G+ P  +T+ V+I G   +                             +G  ++  + +
Sbjct: 144 EGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEE 203

Query: 181 AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           A+KY +EM G+ + P   TYT + + +V   +VD+A  L+Z+MK  G  P+
Sbjct: 204 AEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVZEMKGXGIKPN 254



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 76/150 (50%), Gaps = 10/150 (6%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA + F ++K +   P VV +T +I+ Y S  Q  +ALR+   M   G+ PNA TY+ L+
Sbjct: 203 EAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVZEMKGXGIKPNAITYSTLL 262

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQKVDEARGLLQQM 223
            GL      NA+ + +A+  L EM+ K + P +   +  +  +  ++  +D A  +L+ M
Sbjct: 263 PGLC-----NAEKMSEARVJLKEMMDKYLAPTDNSIFMRLIXSHCKSGNLDAAADVLKAM 317

Query: 224 KAKGFVPDEKAVKEALID---KRGQGFRGV 250
             +  VP E      LI+   K GQ  + V
Sbjct: 318 -IRLSVPTEAGHXGXLIENFCKVGQYDKAV 346


>gi|302770783|ref|XP_002968810.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
 gi|300163315|gb|EFJ29926.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
          Length = 545

 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 99/233 (42%), Gaps = 41/233 (17%)

Query: 49  TKSKLPPPYDPFKKVVD-----EEPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLT 103
            ++   P Y  +   +D     E   D   L +   + +    T     + D L K G  
Sbjct: 34  VRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRL 93

Query: 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
            EA+ +  Q+ +KG+ P +  +T VI+  + AG+ +EA R+F+ ML +G  P+A+ Y  L
Sbjct: 94  DEAMAVLEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTAL 153

Query: 164 IKGLAAAA--------------------------------DGNAK---ILGDAQKYLMEM 188
           IKGL  +                                 DG  K   IL   Q +  E 
Sbjct: 154 IKGLCKSGKPEEAYALYKEANARKHHATAVPDVVTYTSLIDGLCKAGRILEARQVFDDEA 213

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           V +G  P+A TYT++ +   +  +V+E      +M+ +G+ PD      ALID
Sbjct: 214 VERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPD-AVTYAALID 265



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 73/157 (46%), Gaps = 7/157 (4%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F  M   G     V    + D    +G    A++LF ++ D+G  P++V++  +I     
Sbjct: 315 FLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCR 374

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
           AG+  +A   F ++L   + P+ YT+   + GL    D     + D  +    MV +G  
Sbjct: 375 AGKLAKAYFYFEKLLQRRLCPDVYTFNAFLHGLCQRLD----TVSDGVELFESMVSQGTS 430

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           PN  +Y+ + +   RA  ++ A  + ++M ++G  PD
Sbjct: 431 PNLHSYSILMDGICRAGGLEVALEIFREMVSRGVAPD 467



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 68/139 (48%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K G   E  + F +++++G+ PD V + A+I+ +  A    +A RV+ +ML SG
Sbjct: 228 IIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSG 287

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
              +  TY +++ GL  A       + +A    + M  +G      TY+A+ + F     
Sbjct: 288 TVVSTVTYNIILDGLCKAGR-----VAEAYATFLAMEERGCVATVVTYSALMDGFCSEGN 342

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V  A  L ++M  +G  P+
Sbjct: 343 VSAAVELFRRMLDRGCEPN 361



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 66/138 (47%), Gaps = 6/138 (4%)

Query: 93  MFDALSKDGLTHEALQLFA-QIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
           + D L K G   EA Q+F  +  ++G +PD V +T++I+     G+ +E    F  M   
Sbjct: 192 LIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNR 251

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           G  P+A TYA LI G        AK++  A +   +M+  G   +  TY  + +   +A 
Sbjct: 252 GYEPDAVTYAALIDGFM-----KAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAG 306

Query: 212 KVDEARGLLQQMKAKGFV 229
           +V EA      M+ +G V
Sbjct: 307 RVAEAYATFLAMEERGCV 324



 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 58/114 (50%), Gaps = 5/114 (4%)

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
           PD+VA T VI       +  EA  V  R + +G  P+  TY V I GL       A+ + 
Sbjct: 5   PDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLC-----KAERVD 59

Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK 233
           DA + L +M  K   P   TYTA+ +  ++A ++DEA  +L+QM  KG  P  K
Sbjct: 60  DAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLK 113



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 60/139 (43%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L ++    EA  +  +    G  PD V +   I+    A +  +A ++  +M    
Sbjct: 13  VINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKK 72

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P   TY  L+ GL  A       L +A   L +MV KG  P   TYT V +   +A +
Sbjct: 73  CLPTTVTYTALVDGLLKAGR-----LDEAMAVLEQMVEKGNSPTLKTYTVVIDGLSKAGR 127

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V+EAR +   M   G  PD
Sbjct: 128 VEEARRIFVDMLGNGCRPD 146



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 67/126 (53%), Gaps = 6/126 (4%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           + ++LF  +  +G  P++ +++ +++    AG  + AL +F  M++ GVAP+   +  LI
Sbjct: 416 DGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVALEIFREMVSRGVAPDVVVFNTLI 475

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           + L  A       + +A +   E+  +   P+A +Y ++ +   R ++++EAR L   MK
Sbjct: 476 RWLCIAGR-----VDEALEVFRELERRSA-PDAWSYWSLLDGLSRCERMEEARLLSFHMK 529

Query: 225 AKGFVP 230
            +G  P
Sbjct: 530 LQGCAP 535



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 4/96 (4%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F  M ++G + N      + D + + G    AL++F ++  +G  PDVV    +I   
Sbjct: 419 ELFESMVSQGTSPNLHSYSILMDGICRAGGLEVALEIFREMVSRGVAPDVVVFNTLIRWL 478

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
             AG+  EAL VF R L    AP+A++Y  L+ GL+
Sbjct: 479 CIAGRVDEALEVF-RELERRSAPDAWSYWSLLDGLS 513


>gi|302141714|emb|CBI18917.3| unnamed protein product [Vitis vinifera]
          Length = 496

 Score = 80.9 bits (198), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 76/157 (48%), Gaps = 9/157 (5%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F++M   G   + +    +  +LSK     EA   F  +KD+   PDVV +T+++  +  
Sbjct: 169 FNRMEDYGCKPDKIAFSVVISSLSKKRRAIEAQSFFDSLKDRFE-PDVVVYTSLVHGWCR 227

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
           AG   EA RVF  M  +G+ PN YTY+++I  L  +       +  A     EM+  G  
Sbjct: 228 AGNISEAERVFGEMKMAGIQPNVYTYSIVIDALCRSGQ-----ITRAHDVFSEMIDVGCD 282

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           PNA T+  +    V+A + ++   +  QMK  G  PD
Sbjct: 283 PNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPD 319



 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 75/153 (49%), Gaps = 9/153 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +F +M+  G+  N      + DAL + G    A  +F+++ D G  P+ +    ++  
Sbjct: 235 ERVFGEMKMAGIQPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRV 294

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +  AG+ ++ L+V+ +M   G  P+A TY  LI+  +   D N   L +A K ++  V K
Sbjct: 295 HVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIE--SHCRDDN---LEEAVK-ILNSVKK 348

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           G   NA ++  +F    +   V+ A  +  +MK
Sbjct: 349 GCNLNASSFNPIFGCISKLGDVNSAHRMFAKMK 381



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 12/183 (6%)

Query: 53  LPPPYDPFKKVVDEEPTDPRNLQEIFHKMRT--EGLTNNAVK---MFDALSKDGLTHEAL 107
            PP    +  +++    D  NL+E    + +  +G   NA     +F  +SK G  + A 
Sbjct: 316 CPPDAITYNFLIESHCRDD-NLEEAVKILNSVKKGCNLNASSFNPIFGCISKLGDVNSAH 374

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
           ++FA++KD    P+ V +  ++  +A        L++   M  + + PNA TY VLI   
Sbjct: 375 RMFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKLRKEMDENEIEPNANTYRVLISTF 434

Query: 168 AAAADGNAKILGDAQKYLMEMV-GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK 226
                 N     +A  +  EM+  K +RP+   Y  V +   +A ++ +   L+++M  +
Sbjct: 435 CGIGHWN-----NAYSFFKEMIEEKCLRPSLPVYEMVLQQLRKAGQLKKHEELVEKMVNR 489

Query: 227 GFV 229
           GFV
Sbjct: 490 GFV 492



 Score = 43.5 bits (101), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 43/202 (21%), Positives = 75/202 (37%), Gaps = 48/202 (23%)

Query: 75  QEIFHKMRTEGLTNNAVKMFDALS---KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            ++F +M   G   NA+   + +    K G T + LQ++ Q+K  G  PD + +  +IE+
Sbjct: 270 HDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIES 329

Query: 132 YASAGQGKEAL----------------------------------RVFMRMLASGVAPNA 157
           +      +EA+                                  R+F +M      PN 
Sbjct: 330 HCRDDNLEEAVKILNSVKKGCNLNASSFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPNT 389

Query: 158 YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
            TY +L++  A     + K      K   EM    + PNA TY  +   F      + A 
Sbjct: 390 VTYNILMRMFA-----DKKSTDMVLKLRKEMDENEIEPNANTYRVLISTFCGIGHWNNAY 444

Query: 218 GLLQQMKAKGFVPDEKAVKEAL 239
              ++M       +EK ++ +L
Sbjct: 445 SFFKEM------IEEKCLRPSL 460


>gi|357499275|ref|XP_003619926.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494941|gb|AES76144.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 727

 Score = 80.9 bits (198), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 78/159 (49%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           EI   M   GLT + V    + D L K     +A+ LF Q+ + G  PDV ++T +I   
Sbjct: 381 EIVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESGLTPDVWSYTILIHGC 440

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
            ++ +  EA+ +   M    + P+  TY+ LI GL  +       + +A + L EM  KG
Sbjct: 441 CTSRRMGEAMNLLRDMHLKNLVPHIVTYSCLIDGLCRSGR-----ISNAWRLLNEMHVKG 495

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             P+  TY+ + +A  + Q +DEA  L  QM  +G  PD
Sbjct: 496 PLPDTITYSILLDALWKKQHLDEAVFLFNQMIKRGLEPD 534



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 82/163 (50%), Gaps = 8/163 (4%)

Query: 72  RNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R+   +F +M  EG+  N V    + D L K G    A ++   +   G  PD+V    +
Sbjct: 342 RDAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSGLTPDIVTCCIL 401

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           ++    + +  +A+ +F +++ SG+ P+ ++Y +LI G        ++ +G+A   L +M
Sbjct: 402 LDGLCKSKRLDQAILLFNQLVESGLTPDVWSYTILIHGCCT-----SRRMGEAMNLLRDM 456

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             K + P+  TY+ + +   R+ ++  A  LL +M  KG +PD
Sbjct: 457 HLKNLVPHIVTYSCLIDGLCRSGRISNAWRLLNEMHVKGPLPD 499



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 69/139 (49%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K+G+  EA ++F ++ ++G+ P++V  TA++  Y   G    A  +F  +   G
Sbjct: 261 LIDGLCKNGMLVEAREMFDEMVNRGYEPNIVTCTALMGGYCLKGNVDMARELFDAIGEWG 320

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
              + +TY V I G      G  +   DA +   EM  +G+ PN  TY ++ +   +A +
Sbjct: 321 FKRDVWTYNVFIHGYCKV--GRVR---DAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGE 375

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V  A  +++ M   G  PD
Sbjct: 376 VSGAWEIVKTMHRSGLTPD 394



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 70/160 (43%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+F +M   G   N V    +       G    A +LF  I + G   DV  +   I  
Sbjct: 275 REMFDEMVNRGYEPNIVTCTALMGGYCLKGNVDMARELFDAIGEWGFKRDVWTYNVFIHG 334

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y   G+ ++A+RVF  M   GV PN  TY  LI  L  A +     +  A + +  M   
Sbjct: 335 YCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGE-----VSGAWEIVKTMHRS 389

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G+ P+  T   + +   +++++D+A  L  Q+   G  PD
Sbjct: 390 GLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESGLTPD 429



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 78/196 (39%), Gaps = 42/196 (21%)

Query: 78  FH-KMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMP--------DVVAH 125
           FH ++   G + N V    + + L ++G  +EA+ L   I+ +            +VV +
Sbjct: 129 FHDEIVNNGFSLNEVSYGILINGLCENGRVNEAVNLLRMIEKEKEKEKDGFFVKGNVVMY 188

Query: 126 TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA-------------- 171
           + VI+     G   E    +  M+ +GV PN +TY  LI+GL                  
Sbjct: 189 SIVIDCLCRNGFVDEGFEFYNEMMGNGVCPNEFTYGSLIRGLCGVGKFLEGFGLVDEMIR 248

Query: 172 --------------DGNAK--ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
                         DG  K  +L +A++   EMV +G  PN  T TA+   +     VD 
Sbjct: 249 RGLDVSVYVFTVLIDGLCKNGMLVEAREMFDEMVNRGYEPNIVTCTALMGGYCLKGNVDM 308

Query: 216 ARGLLQQMKAKGFVPD 231
           AR L   +   GF  D
Sbjct: 309 ARELFDAIGEWGFKRD 324



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 40/75 (53%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DAL K     EA+ LF Q+  +G  PDV+ +T +I+ Y  + +  EA+ +F  M    
Sbjct: 506 LLDALWKKQHLDEAVFLFNQMIKRGLEPDVMCYTIMIDGYCKSERIDEAINLFREMHMKN 565

Query: 153 VAPNAYTYAVLIKGL 167
           + P+  TY +L   +
Sbjct: 566 LVPDIVTYTILFNAV 580



 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 55/136 (40%), Gaps = 15/136 (11%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           +  +F +I  +G+  D VA   V++     G   +AL     ++ +G + N  +Y +LI 
Sbjct: 91  SFSIFGKILKRGYGLDTVALNTVLKGLCVNGGVLKALEFHDEIVNNGFSLNEVSYGILIN 150

Query: 166 GLAAAADGNAKILGDAQKYLMEMV---------GKGMRPNAGTYTAVFEAFVRAQKVDEA 216
           GL      N  +       L+ M+         G  ++ N   Y+ V +   R   VDE 
Sbjct: 151 GLCENGRVNEAV------NLLRMIEKEKEKEKDGFFVKGNVVMYSIVIDCLCRNGFVDEG 204

Query: 217 RGLLQQMKAKGFVPDE 232
                +M   G  P+E
Sbjct: 205 FEFYNEMMGNGVCPNE 220


>gi|414868428|tpg|DAA46985.1| TPA: hypothetical protein ZEAMMB73_842284 [Zea mays]
          Length = 683

 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 82/174 (47%), Gaps = 11/174 (6%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E    M+  G + N V    + +   K G  H+A      + + G MPDV+  T++I+  
Sbjct: 446 ETIKVMQESGFSPNLVTFNTLINGYLKLGNVHDAKAFLKMVMEHGLMPDVITFTSLIDGL 505

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               Q  +A   F  M   GV PN  TY VLI GL +A       +  A + L +M   G
Sbjct: 506 CHTHQLDDAFNCFSEMSEWGVRPNVQTYNVLIHGLCSAGH-----VSKAIELLNKMKMDG 560

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE---KAVKEALIDKR 243
           + P+A ++ A   +F R +K+++A+ L   M   G  PD     A+ +AL D+R
Sbjct: 561 ITPDAYSFNAPILSFCRMRKIEKAQKLFNDMSRYGVSPDSYTYNALIKALCDER 614



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 71/140 (50%), Gaps = 5/140 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + ++  + GL H A ++F Q+   G  P    + AVI A   AG    A   F +M A G
Sbjct: 151 LVESWGRLGLAHYAHEVFVQVPRLGLRPSTAIYNAVIAASVRAGAVDAAYLRFQQMPADG 210

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+ +TY  L+ G+         I+ +A + + +M   G+RPN  TYT + + F  A +
Sbjct: 211 CRPDCFTYNTLVHGVCRRG-----IVDEALRLVKQMERAGIRPNVVTYTMLVDGFCNASR 265

Query: 213 VDEARGLLQQMKAKGFVPDE 232
           V+EA  +L++MK KG    E
Sbjct: 266 VEEAVCVLERMKEKGVSATE 285



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 63/157 (40%), Gaps = 30/157 (19%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +A + F+Q+   G +  V ++  VI+ +A AG+ + AL     M  SG +PN  T+  LI
Sbjct: 408 KANKYFSQMVSDGLLSSVESYNIVIDCFAKAGEVERALETIKVMQESGFSPNLVTFNTLI 467

Query: 165 KG---LAAAADGNAKI---------------------------LGDAQKYLMEMVGKGMR 194
            G   L    D  A +                           L DA     EM   G+R
Sbjct: 468 NGYLKLGNVHDAKAFLKMVMEHGLMPDVITFTSLIDGLCHTHQLDDAFNCFSEMSEWGVR 527

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           PN  TY  +      A  V +A  LL +MK  G  PD
Sbjct: 528 PNVQTYNVLIHGLCSAGHVSKAIELLNKMKMDGITPD 564



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 2/86 (2%)

Query: 81  MRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140
            R +  T N   +   + + G+  EAL+L  Q++  G  P+VV +T +++ + +A + +E
Sbjct: 211 CRPDCFTYNT--LVHGVCRRGIVDEALRLVKQMERAGIRPNVVTYTMLVDGFCNASRVEE 268

Query: 141 ALRVFMRMLASGVAPNAYTYAVLIKG 166
           A+ V  RM   GV+    TY  L+ G
Sbjct: 269 AVCVLERMKEKGVSATEATYRSLVHG 294



 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 30/136 (22%), Positives = 59/136 (43%), Gaps = 5/136 (3%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            LSK+ +  EA++L  ++  +G++      + VI       +  +   +    +  G   
Sbjct: 329 CLSKNDMDKEAVELAKKMSKRGYLLGSTTFSIVIPCAVKVLESSDLCELVDDFIKKGGNL 388

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
               Y ++IK      D     +  A KY  +MV  G+  +  +Y  V + F +A +V+ 
Sbjct: 389 GFDMYIMIIKSFLRCKD-----ISKANKYFSQMVSDGLLSSVESYNIVIDCFAKAGEVER 443

Query: 216 ARGLLQQMKAKGFVPD 231
           A   ++ M+  GF P+
Sbjct: 444 ALETIKVMQESGFSPN 459



 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 5/137 (3%)

Query: 95  DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           DAL + G    +  L A ++  G         A++E++   G    A  VF+++   G+ 
Sbjct: 118 DALLRRGPVVLSAALVADVRSCGCEVSEELLCALVESWGRLGLAHYAHEVFVQVPRLGLR 177

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
           P+   Y  +I     AA   A  +  A     +M   G RP+  TY  +     R   VD
Sbjct: 178 PSTAIYNAVI-----AASVRAGAVDAAYLRFQQMPADGCRPDCFTYNTLVHGVCRRGIVD 232

Query: 215 EARGLLQQMKAKGFVPD 231
           EA  L++QM+  G  P+
Sbjct: 233 EALRLVKQMERAGIRPN 249


>gi|224160015|ref|XP_002338159.1| predicted protein [Populus trichocarpa]
 gi|222871069|gb|EEF08200.1| predicted protein [Populus trichocarpa]
          Length = 368

 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 72/139 (51%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K G T  A  LF ++ + G  PDVV ++ +I++     +  EAL +F  M A G
Sbjct: 16  IINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKG 75

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           ++PN +TY  LI+GL      N     +A   L EM+   + PN  T++ +   F +   
Sbjct: 76  ISPNIFTYNSLIQGLC-----NFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGN 130

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V EARG+L+ M   G  P+
Sbjct: 131 VFEARGVLKTMTEMGVEPN 149



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 70/144 (48%), Gaps = 5/144 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA QLF ++  +G  PD+V++  +I+     G+ +EA  +F  ML +G  P+  TY++L+
Sbjct: 203 EAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILL 262

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            G           L  A +    M    ++PN   Y  + +A  +++ + EAR L  ++ 
Sbjct: 263 DGFCKQG-----YLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELF 317

Query: 225 AKGFVPDEKAVKEALIDKRGQGFR 248
            +G  P+ K  K   I KR    R
Sbjct: 318 VQGLQPNMKHWKLFEIWKRMAALR 341



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 72/139 (51%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +   K+G   EA  +   + + G  P+VV +++++  Y+   +  EA ++F  M+  G
Sbjct: 121 LINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKG 180

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+ ++Y +LI G        AK +G+A++   EM+ +G+ P+  +Y  + +   +  +
Sbjct: 181 CKPDVFSYNILINGYCK-----AKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGR 235

Query: 213 VDEARGLLQQMKAKGFVPD 231
           + EA  L + M   G +PD
Sbjct: 236 LREAHDLFKNMLTNGNLPD 254



 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 73/138 (52%), Gaps = 9/138 (6%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +++F++M  +GLT + V    + D L + G   EA  LF  +   G++PD+  ++ +++ 
Sbjct: 205 KQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDG 264

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +   G   +A R+F  M ++ + PN   Y +LI  +  + +     L +A+K   E+  +
Sbjct: 265 FCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRN-----LKEARKLFSELFVQ 319

Query: 192 GMRPNAGTYTAVFEAFVR 209
           G++PN   +  +FE + R
Sbjct: 320 GLQPNMKHW-KLFEIWKR 336


>gi|147779268|emb|CAN70089.1| hypothetical protein VITISV_038171 [Vitis vinifera]
          Length = 838

 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 84/167 (50%), Gaps = 8/167 (4%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++FH+MR++    N      + +A +++GL  +A ++F Q+++ G  PDV A+ A++EAY
Sbjct: 224 KVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAY 283

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           + AG    A  +F  M   G  P+  +Y +++      A G A +  DAQ     M   G
Sbjct: 284 SRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVD-----AYGRAGLHEDAQAVFEVMKRLG 338

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
           + P   ++  +  A+ RA KV +   ++ QM   G  PD   +   L
Sbjct: 339 ITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSML 385



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 107/249 (42%), Gaps = 13/249 (5%)

Query: 2   AATAILRWLLHSPSPKRSLRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFK 61
           A   I  W+L+  S    +   N  ++A  Q+SL   ++    + +  +++  P  D + 
Sbjct: 80  AIVLICGWILYRSSFHPDVICYNLLIDAYGQKSLYKKAESTYLELL--EARCVPTEDTYA 137

Query: 62  KVVDEEPTDP--RNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDK 116
            ++    T       + +F +MR  G   +AV      D L K G T +A+++F ++K  
Sbjct: 138 LLLKAYCTSGLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRD 197

Query: 117 GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK 176
              P    +T +I  Y  A +   AL+VF  M +    PN  T+  L+   A        
Sbjct: 198 RCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFA-----REG 252

Query: 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK 236
           +   A++   ++   G+ P+   Y A+ EA+ RA     A  +   M+  G  PD +A  
Sbjct: 253 LCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPD-RASY 311

Query: 237 EALIDKRGQ 245
             ++D  G+
Sbjct: 312 NIMVDAYGR 320



 Score = 46.2 bits (108), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 42/208 (20%), Positives = 77/208 (37%), Gaps = 43/208 (20%)

Query: 71  PRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P    EIF  M+  G   +      M DA  + GL  +A  +F  +K  G  P + +H  
Sbjct: 289 PYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHML 348

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAY----------------------------- 158
           ++ AY+ AG+  +   +  +M  SG+ P+ +                             
Sbjct: 349 LLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKGP 408

Query: 159 ------TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
                 TY +LI        G A      ++    +  + + P+  T+T+   A+ R ++
Sbjct: 409 YPADISTYNILIN-----IYGRAGFFARMEELFRSLPARNLIPDVVTWTSRIGAYSRRKQ 463

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALI 240
            +    + ++M   G  PD    K  L+
Sbjct: 464 YNRCLEVFEEMIDAGCYPDGGTAKNVLL 491


>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Cucumis sativus]
          Length = 749

 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 49/144 (34%), Positives = 76/144 (52%), Gaps = 10/144 (6%)

Query: 93  MFDALSKD----GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQG-KEALRVFMR 147
           +FD + K      L ++AL +    K  G MP V+++ A+++A     Q  K A  +F  
Sbjct: 134 VFDLVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKE 193

Query: 148 MLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAF 207
           M+ SGV+PN YTY +LI+G   A  GN ++      +  EM   G  PN  TY  + +A+
Sbjct: 194 MVESGVSPNVYTYNILIRGFCTA--GNLEM---GLXFFGEMERNGCLPNVVTYNTIIDAY 248

Query: 208 VRAQKVDEARGLLQQMKAKGFVPD 231
            + +K+ EA  LL+ M  KG  P+
Sbjct: 249 CKLRKIGEAFKLLRLMALKGLNPN 272



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 78/160 (48%), Gaps = 8/160 (5%)

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E   +MR  GL  N      + D  S+ G   +A Q+  ++ + G  P ++ + A+I  +
Sbjct: 364 EFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGH 423

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+ ++A  +   M+  G  P+  +Y+ +I G     +     L  A +  +EMV KG
Sbjct: 424 CILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQE-----LEKAFQLKVEMVAKG 478

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           + P+  TY+++ +   + +++ E   L Q+M + G  PDE
Sbjct: 479 ISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDE 518



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 81/158 (51%), Gaps = 14/158 (8%)

Query: 80  KMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           +M   GL+ N V    + +++ K G  + A++   Q++D+G  P+   +T +I+ ++  G
Sbjct: 333 EMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQG 392

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG---DAQKYLMEMVGKGM 193
             K+A ++   M+ +G  P   TY  LI G          ILG   DA   L EM+ +G 
Sbjct: 393 FLKQAYQIMKEMVENGFTPTIITYNALINGHC--------ILGRMEDASGLLQEMIERGF 444

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            P+  +Y+ +   F R Q++++A  L  +M AKG  PD
Sbjct: 445 IPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPD 482



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 82/165 (49%), Gaps = 11/165 (6%)

Query: 72  RNLQEIFHKMRT---EGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAH 125
           R + E F  +R    +GL  N +    + + L ++G   E  ++  ++  + ++PD V  
Sbjct: 252 RKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTF 311

Query: 126 TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185
             +I  Y + G   +AL +   M+ +G++PN  TY  LI  +  A +     L  A ++L
Sbjct: 312 NTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGN-----LNRAMEFL 366

Query: 186 MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
            +M  +G+ PN  TYT + + F +   + +A  ++++M   GF P
Sbjct: 367 DQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTP 411



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 73/131 (55%), Gaps = 5/131 (3%)

Query: 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
           G   +A  L  ++ ++G +PDVV+++ +I  +    + ++A ++ + M+A G++P+  TY
Sbjct: 427 GRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATY 486

Query: 161 AVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
           + LI+GL        + LG+      EM+  G+ P+  TYT++  A+     +D+A  L 
Sbjct: 487 SSLIQGLCK-----QRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLH 541

Query: 221 QQMKAKGFVPD 231
            +M  KGF PD
Sbjct: 542 DEMIQKGFSPD 552



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 73/173 (42%), Gaps = 8/173 (4%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F +M   G   N V    + DA  K     EA +L   +  KG  P+++++  VI     
Sbjct: 226 FGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCR 285

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            GQ KE   +   M      P+  T+  LI G     + +  ++  A     EMV  G+ 
Sbjct: 286 EGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHA-----EMVKNGLS 340

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGF 247
           PN  TYT +  +  +A  ++ A   L QM+ +G  P+ +     +     QGF
Sbjct: 341 PNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGF 393



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 64/137 (46%), Gaps = 6/137 (4%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +A QL  ++  KG  PDV  ++++I+      +  E   +F  ML+ G+ P+  TY  LI
Sbjct: 466 KAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLI 525

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
                  D     L  A +   EM+ KG  P+  TY  +   F +  +  EA+ LL ++ 
Sbjct: 526 NAYCIEGD-----LDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLL 580

Query: 225 AKGFVPDEKAVKEALID 241
            +  VP+E      LID
Sbjct: 581 YEESVPNE-ITYNTLID 596



 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 69/150 (46%), Gaps = 6/150 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L K     E   LF ++   G  PD V +T++I AY   G   +ALR+   M+  G
Sbjct: 489 LIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKG 548

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            +P+  TY VLI G    +        +A++ L++++ +   PN  TY  + +      +
Sbjct: 549 FSPDIVTYNVLINGFNKQSRTK-----EAKRLLLKLLYEESVPNEITYNTLIDN-CNNLE 602

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDK 242
              A  L++    KG + +   V E+++ K
Sbjct: 603 FKSALALMKGFCMKGLMNEADRVLESMLQK 632



 Score = 37.4 bits (85), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 39/79 (49%)

Query: 89  NAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRM 148
           +A+ +       GL +EA ++   +  KG+  +   +  +I  ++  G  ++A  ++  M
Sbjct: 605 SALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEM 664

Query: 149 LASGVAPNAYTYAVLIKGL 167
           L SG AP++ T   L K L
Sbjct: 665 LHSGFAPHSVTIMALAKSL 683


>gi|449455320|ref|XP_004145401.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
 gi|449471531|ref|XP_004153336.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 670

 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 84/188 (44%), Gaps = 33/188 (17%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +M+ EG   N V    + DALSK+G    A +L   +  KG +P+ V +  +I    
Sbjct: 255 LLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLC 314

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA---AADGNAKILG----------- 179
             G+  +AL +  +M++S   PN  TY  +I GL     A DG   ++            
Sbjct: 315 LKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEY 374

Query: 180 ----------------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
                           +A +   EM  KG +PN   Y A  +   R +K DEA  +LQ+M
Sbjct: 375 IYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEM 434

Query: 224 KAKGFVPD 231
            +KGF+P+
Sbjct: 435 LSKGFLPN 442



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 70/142 (49%), Gaps = 11/142 (7%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L K+G +  A++L+ ++ +KG  P+VV + A I+      +  EA  +   ML+ G
Sbjct: 379 LISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKG 438

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM---EMVGKGMRPNAGTYTAVFEAFVR 209
             PNA+TY+ L+KG            GD+QK ++   EM+ + MR N    + +      
Sbjct: 439 FLPNAFTYSSLMKGFFKK--------GDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCE 490

Query: 210 AQKVDEARGLLQQMKAKGFVPD 231
           + ++ EA  +   M  +G  PD
Sbjct: 491 SGRLREALTVWTHMLGEGLKPD 512



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 13/172 (7%)

Query: 65  DEEPTDPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPD 121
           DE+P +    ++I  +M ++G   NA     +     K G + +A+ ++ ++  +    +
Sbjct: 421 DEKPDEA---EDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHN 477

Query: 122 VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA--AAADGNAKILG 179
           VV  + ++     +G+ +EAL V+  ML  G+ P+   Y+ +IKGL    + D   K+  
Sbjct: 478 VVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLF- 536

Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
               Y M+      RP+  TY  +F A  R   +  A  LL  M  +G  PD
Sbjct: 537 ----YEMQCQEPKSRPDVVTYNILFNALCRQDNLTRAIDLLNSMLDEGCDPD 584



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 66/147 (44%), Gaps = 7/147 (4%)

Query: 86  LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVF 145
           LT N +    AL K G    A+  F ++  K   PDV  ++ ++       +  EA+ + 
Sbjct: 199 LTYNLI--IKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLL 256

Query: 146 MRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFE 205
             M A G  PN  T+ VLI  L+   D     L  A K +  M  KG  PN  TY  +  
Sbjct: 257 DEMQAEGCLPNPVTFNVLIDALSKNGD-----LSRAAKLVDNMFLKGCVPNEVTYNTLIH 311

Query: 206 AFVRAQKVDEARGLLQQMKAKGFVPDE 232
                 K+D+A  LL++M +   VP++
Sbjct: 312 GLCLKGKLDKALSLLEKMVSSKCVPNQ 338



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 12/165 (7%)

Query: 74  LQEIFHKMRTEG--LTNNA-VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVV-AHTAVI 129
           + ++  +M+ EG  LT    + +F A  K  L  EA+  F ++ +  H    V +  +V+
Sbjct: 108 IHQVLDRMKREGRVLTETIFILIFKACGKAHLPGEAVNFFHRMANDLHCKQTVKSFNSVL 167

Query: 130 EAYASAGQGKEALRVFMRMLAS---GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
                 G    A + ++ +  +   G  PN  TY ++IK L          +  A     
Sbjct: 168 NVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCKLGQ-----IDRAVDTFR 222

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           EM  K   P+  TY+ +     + ++VDEA  LL +M+A+G +P+
Sbjct: 223 EMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPN 267



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 5/135 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K+    EA+ L  +++ +G +P+ V    +I+A +  G    A ++   M   G
Sbjct: 239 LMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKG 298

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN  TY  LI GL          L  A   L +MV     PN  TY  +    V+ ++
Sbjct: 299 CVPNEVTYNTLIHGLCLKGK-----LDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRR 353

Query: 213 VDEARGLLQQMKAKG 227
            ++   +L  M+ +G
Sbjct: 354 AEDGVHILMSMEERG 368


>gi|226530647|ref|NP_001146846.1| peptidase S8 and S53, subtilisin, kexin, sedolisin [Zea mays]
 gi|194699540|gb|ACF83854.1| unknown [Zea mays]
 gi|195604202|gb|ACG23931.1| peptidase S8 and S53, subtilisin, kexin, sedolisin [Zea mays]
 gi|414886441|tpg|DAA62455.1| TPA: peptidase S8 and S53, subtilisin, kexin, sedolisin [Zea mays]
          Length = 401

 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 79/158 (50%), Gaps = 8/158 (5%)

Query: 74  LQEIFHK-MRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           L E+ H+ +  + L    V   +AL +     EA +L   ++ +G  PD+V +  VI   
Sbjct: 210 LDEMLHRGIPADPLAYTTV--LNALCRKKQLREAYRLLCLMRGRGVSPDIVHYNTVIVGM 267

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+  +A +V + M+ +G  PNA TY  ++ GL  +      +   A+ YL++MVGKG
Sbjct: 268 CREGRPLDACKVVVDMMDNGCTPNAVTYGTVVNGLCVSG-----LYDKAEAYLVDMVGKG 322

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           + P+   + +V        KV+EA  ++ +M   G VP
Sbjct: 323 LVPHFSVFHSVIRGCCTVGKVEEAAQIMSRMLDLGVVP 360



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 8/158 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
            +FH++R+  ++ +A     +  +L +      A  L  ++  +G   D +A+T V+ A 
Sbjct: 173 SLFHRLRSLHVSPDADTYRILTQSLCRKAQVRTAATLLDEMLHRGIPADPLAYTTVLNAL 232

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               Q +EA R+   M   GV+P+   Y  +I G+    +G      DA K +++M+  G
Sbjct: 233 CRKKQLREAYRLLCLMRGRGVSPDIVHYNTVIVGM--CREGRPL---DACKVVVDMMDNG 287

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
             PNA TY  V      +   D+A   L  M  KG VP
Sbjct: 288 CTPNAVTYGTVVNGLCVSGLYDKAEAYLVDMVGKGLVP 325



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 8/130 (6%)

Query: 105 EALQLFAQIKDKGHMPD---VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYA 161
            AL L   +  +  +P    + +H  +I+A A +G    +L +F R+ +  V+P+A TY 
Sbjct: 132 SALHLLRLVSSRLPLPAPLVLASHNLLIDAAARSGHVAVSLSLFHRLRSLHVSPDADTYR 191

Query: 162 VLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221
           +L + L   A      +  A   L EM+ +G+  +   YT V  A  R +++ EA  LL 
Sbjct: 192 ILTQSLCRKAQ-----VRTAATLLDEMLHRGIPADPLAYTTVLNALCRKKQLREAYRLLC 246

Query: 222 QMKAKGFVPD 231
            M+ +G  PD
Sbjct: 247 LMRGRGVSPD 256



 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 58/139 (41%), Gaps = 25/139 (17%)

Query: 56  PYDPFKKVVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQ 112
           P D  K VVD               M   G T NAV    + + L   GL  +A      
Sbjct: 273 PLDACKVVVD---------------MMDNGCTPNAVTYGTVVNGLCVSGLYDKAEAYLVD 317

Query: 113 IKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172
           +  KG +P      +VI    + G+ +EA ++  RML  GV P+  +++ +I+ +    D
Sbjct: 318 MVGKGLVPHFSVFHSVIRGCCTVGKVEEAAQIMSRMLDLGVVPHVESWSSVIRCVCKDED 377

Query: 173 GNAKILGDAQKYLMEMVGK 191
                    +  L+++VG+
Sbjct: 378 C-------IEAELLQIVGR 389


>gi|414868427|tpg|DAA46984.1| TPA: hypothetical protein ZEAMMB73_842284 [Zea mays]
          Length = 674

 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 82/174 (47%), Gaps = 11/174 (6%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E    M+  G + N V    + +   K G  H+A      + + G MPDV+  T++I+  
Sbjct: 446 ETIKVMQESGFSPNLVTFNTLINGYLKLGNVHDAKAFLKMVMEHGLMPDVITFTSLIDGL 505

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               Q  +A   F  M   GV PN  TY VLI GL +A       +  A + L +M   G
Sbjct: 506 CHTHQLDDAFNCFSEMSEWGVRPNVQTYNVLIHGLCSAGH-----VSKAIELLNKMKMDG 560

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE---KAVKEALIDKR 243
           + P+A ++ A   +F R +K+++A+ L   M   G  PD     A+ +AL D+R
Sbjct: 561 ITPDAYSFNAPILSFCRMRKIEKAQKLFNDMSRYGVSPDSYTYNALIKALCDER 614



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 71/140 (50%), Gaps = 5/140 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + ++  + GL H A ++F Q+   G  P    + AVI A   AG    A   F +M A G
Sbjct: 151 LVESWGRLGLAHYAHEVFVQVPRLGLRPSTAIYNAVIAASVRAGAVDAAYLRFQQMPADG 210

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+ +TY  L+ G+         I+ +A + + +M   G+RPN  TYT + + F  A +
Sbjct: 211 CRPDCFTYNTLVHGVCRRG-----IVDEALRLVKQMERAGIRPNVVTYTMLVDGFCNASR 265

Query: 213 VDEARGLLQQMKAKGFVPDE 232
           V+EA  +L++MK KG    E
Sbjct: 266 VEEAVCVLERMKEKGVSATE 285



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 63/157 (40%), Gaps = 30/157 (19%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +A + F+Q+   G +  V ++  VI+ +A AG+ + AL     M  SG +PN  T+  LI
Sbjct: 408 KANKYFSQMVSDGLLSSVESYNIVIDCFAKAGEVERALETIKVMQESGFSPNLVTFNTLI 467

Query: 165 KG---LAAAADGNAKI---------------------------LGDAQKYLMEMVGKGMR 194
            G   L    D  A +                           L DA     EM   G+R
Sbjct: 468 NGYLKLGNVHDAKAFLKMVMEHGLMPDVITFTSLIDGLCHTHQLDDAFNCFSEMSEWGVR 527

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           PN  TY  +      A  V +A  LL +MK  G  PD
Sbjct: 528 PNVQTYNVLIHGLCSAGHVSKAIELLNKMKMDGITPD 564



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 2/86 (2%)

Query: 81  MRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140
            R +  T N   +   + + G+  EAL+L  Q++  G  P+VV +T +++ + +A + +E
Sbjct: 211 CRPDCFTYNT--LVHGVCRRGIVDEALRLVKQMERAGIRPNVVTYTMLVDGFCNASRVEE 268

Query: 141 ALRVFMRMLASGVAPNAYTYAVLIKG 166
           A+ V  RM   GV+    TY  L+ G
Sbjct: 269 AVCVLERMKEKGVSATEATYRSLVHG 294



 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 30/136 (22%), Positives = 59/136 (43%), Gaps = 5/136 (3%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            LSK+ +  EA++L  ++  +G++      + VI       +  +   +    +  G   
Sbjct: 329 CLSKNDMDKEAVELAKKMSKRGYLLGSTTFSIVIPCAVKVLESSDLCELVDDFIKKGGNL 388

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
               Y ++IK      D     +  A KY  +MV  G+  +  +Y  V + F +A +V+ 
Sbjct: 389 GFDMYIMIIKSFLRCKD-----ISKANKYFSQMVSDGLLSSVESYNIVIDCFAKAGEVER 443

Query: 216 ARGLLQQMKAKGFVPD 231
           A   ++ M+  GF P+
Sbjct: 444 ALETIKVMQESGFSPN 459



 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 5/137 (3%)

Query: 95  DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           DAL + G    +  L A ++  G         A++E++   G    A  VF+++   G+ 
Sbjct: 118 DALLRRGPVVLSAALVADVRSCGCEVSEELLCALVESWGRLGLAHYAHEVFVQVPRLGLR 177

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
           P+   Y  +I     AA   A  +  A     +M   G RP+  TY  +     R   VD
Sbjct: 178 PSTAIYNAVI-----AASVRAGAVDAAYLRFQQMPADGCRPDCFTYNTLVHGVCRRGIVD 232

Query: 215 EARGLLQQMKAKGFVPD 231
           EA  L++QM+  G  P+
Sbjct: 233 EALRLVKQMERAGIRPN 249


>gi|449502431|ref|XP_004161638.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 646

 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 84/188 (44%), Gaps = 33/188 (17%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +M+ EG   N V    + DALSK+G    A +L   +  KG +P+ V +  +I    
Sbjct: 231 LLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLC 290

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA---AADGNAKILG----------- 179
             G+  +AL +  +M++S   PN  TY  +I GL     A DG   ++            
Sbjct: 291 LKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEY 350

Query: 180 ----------------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
                           +A +   EM  KG +PN   Y A  +   R +K DEA  +LQ+M
Sbjct: 351 IYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEM 410

Query: 224 KAKGFVPD 231
            +KGF+P+
Sbjct: 411 LSKGFLPN 418



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 70/142 (49%), Gaps = 11/142 (7%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L K+G +  A++L+ ++ +KG  P+VV + A I+      +  EA  +   ML+ G
Sbjct: 355 LISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKG 414

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM---EMVGKGMRPNAGTYTAVFEAFVR 209
             PNA+TY+ L+KG            GD+QK ++   EM+ + MR N    + +      
Sbjct: 415 FLPNAFTYSSLMKGFFKK--------GDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCE 466

Query: 210 AQKVDEARGLLQQMKAKGFVPD 231
           + ++ EA  +   M  +G  PD
Sbjct: 467 SGRLREALTVWTHMLGEGLKPD 488



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 80/172 (46%), Gaps = 13/172 (7%)

Query: 65  DEEPTDPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPD 121
           DE+P +    ++I  +M ++G   NA     +     K G + +A+ ++ ++  +    +
Sbjct: 397 DEKPDEA---EDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHN 453

Query: 122 VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA--AAADGNAKILG 179
           VV  + ++     +G+ +EAL V+  ML  G+ P+   Y+ +IKGL    + D   K+  
Sbjct: 454 VVCCSVLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLF- 512

Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
               Y M+      RP+  TY  +F A  R   +  A  LL  M  +G  PD
Sbjct: 513 ----YEMQCQEPKSRPDVVTYNILFNALCRQDNLTRAIDLLNSMLDEGCDPD 560



 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 66/147 (44%), Gaps = 7/147 (4%)

Query: 86  LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVF 145
           LT N +    AL K G    A+  F ++  K   PDV  ++ ++       +  EA+ + 
Sbjct: 175 LTYNLI--IKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLL 232

Query: 146 MRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFE 205
             M A G  PN  T+ VLI  L+   D     L  A K +  M  KG  PN  TY  +  
Sbjct: 233 DEMQAEGCLPNPVTFNVLIDALSKNGD-----LSRAAKLVDNMFLKGCVPNEVTYNTLIH 287

Query: 206 AFVRAQKVDEARGLLQQMKAKGFVPDE 232
                 K+D+A  LL++M +   VP++
Sbjct: 288 GLCLKGKLDKALSLLEKMVSSKCVPNQ 314



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 75/165 (45%), Gaps = 12/165 (7%)

Query: 74  LQEIFHKMRTEG--LTNNA-VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVV-AHTAVI 129
           + ++  +M+ EG  LT    + +F A  K  L  EA+  F ++ +  H    V +  +V+
Sbjct: 84  IHQVLDRMKREGRVLTETIFILIFKACGKAHLPGEAVNFFHRMANDLHCKQTVKSFNSVL 143

Query: 130 EAYASAGQGKEALRVFMRMLAS---GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
                 G    A + ++ +  +   G  PN  TY ++IK L          +  A     
Sbjct: 144 NVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYNLIIKALCKLGQ-----IDRAVDTFR 198

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           EM  K   P+  TY+ +     + ++VDEA  LL +M+A+G +P+
Sbjct: 199 EMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPN 243



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 5/135 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K+    EA+ L  +++ +G +P+ V    +I+A +  G    A ++   M   G
Sbjct: 215 LMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKG 274

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN  TY  LI GL          L  A   L +MV     PN  TY  +    V+ ++
Sbjct: 275 CVPNEVTYNTLIHGLCLKGK-----LDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRR 329

Query: 213 VDEARGLLQQMKAKG 227
            ++   +L  M+ +G
Sbjct: 330 AEDGVHILMSMEERG 344


>gi|297737955|emb|CBI27156.3| unnamed protein product [Vitis vinifera]
          Length = 625

 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 82/159 (51%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++FH+MR++    N      + +A +++GL  +A ++F Q+++ G  PDV A+ A++EAY
Sbjct: 332 KVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAY 391

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           + AG    A  +F  M   G  P+  +Y +++      A G A +  DAQ     M   G
Sbjct: 392 SRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVD-----AYGRAGLHEDAQAVFEVMKRLG 446

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + P   ++  +  A+ RA KV +   ++ QM   G  PD
Sbjct: 447 ITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPD 485



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 107/249 (42%), Gaps = 13/249 (5%)

Query: 2   AATAILRWLLHSPSPKRSLRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFK 61
           A   I  W+L+  S    +   N  ++A  Q+SL   ++    + +  +++  P  D + 
Sbjct: 188 AIVLICGWILYRSSFHPDVICYNLLIDAYGQKSLYKKAESTYLELL--EARCVPTEDTYA 245

Query: 62  KVVDEEPTDP--RNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDK 116
            ++    T       + +F +MR  G   +AV      D L K G T +A+++F ++K  
Sbjct: 246 LLLKAYCTSGLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRD 305

Query: 117 GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK 176
              P    +T +I  Y  A +   AL+VF  M +    PN  T+  L+   A        
Sbjct: 306 RCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREG----- 360

Query: 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK 236
           +   A++   ++   G+ P+   Y A+ EA+ RA     A  +   M+  G  PD +A  
Sbjct: 361 LCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPD-RASY 419

Query: 237 EALIDKRGQ 245
             ++D  G+
Sbjct: 420 NIMVDAYGR 428



 Score = 44.7 bits (104), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 14/167 (8%)

Query: 71  PRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P    EIF  M+  G   +      M DA  + GL  +A  +F  +K  G  P + +H  
Sbjct: 397 PYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHML 456

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKY--L 185
           ++ AY+ AG+  +   +  +M  SG+ P+ +    ++             LG  +K   +
Sbjct: 457 LLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGR--------LGQFEKMEEV 508

Query: 186 MEMVGKGMRP-NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +  + KG  P +  TY  +   + RA        L + + A+  +PD
Sbjct: 509 LTAMEKGPYPADISTYNILINIYGRAGFFARMEELFRSLPARNLIPD 555



 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 3/67 (4%)

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
           +LF  +  +  +PDVV  T+ I AY+   Q    L VF  M+ +G  P+  T  VL   L
Sbjct: 542 ELFRSLPARNLIPDVVTWTSRIGAYSRRKQYNRCLEVFEEMIDAGCYPDGGTAKVL---L 598

Query: 168 AAAADGN 174
           +A ++G+
Sbjct: 599 SACSNGD 605


>gi|449462483|ref|XP_004148970.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 917

 Score = 80.5 bits (197), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 45/139 (32%), Positives = 77/139 (55%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K G   EA +LF ++K  G +PDV+++T++I  +  +G+ K+A  +F  M+  G
Sbjct: 645 IIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIG 704

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V P+  T++VLI  L        K++ +A + L  M+ +G  PN  TYT + +      +
Sbjct: 705 VQPDVTTFSVLIDMLCK----EGKVI-EANELLEVMIQRGCIPNTVTYTTLVKGLCMNDR 759

Query: 213 VDEARGLLQQMKAKGFVPD 231
           + EA  L  +M+  G +PD
Sbjct: 760 ISEATQLFMKMQKLGCLPD 778



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/145 (28%), Positives = 75/145 (51%), Gaps = 11/145 (7%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K+G   EA +L   +  +G +P+ V +T +++      +  EA ++FM+M   G
Sbjct: 715 LIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLG 774

Query: 153 VAPNAYTYAVLIKGLA------AAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEA 206
             P+  TY  L+KGL        A + + K+L D  +Y     G   +P+  +Y+ + + 
Sbjct: 775 CLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQY-----GTNFKPDVISYSIIIDG 829

Query: 207 FVRAQKVDEARGLLQQMKAKGFVPD 231
             +  + DEAR L ++MKA G +P+
Sbjct: 830 LCKHGREDEARELFKEMKALGVIPN 854



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 50/162 (30%), Positives = 85/162 (52%), Gaps = 10/162 (6%)

Query: 77  IFHKMRTEGL----TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +F++M   G+    T ++V + D L K G   EA +L   +  +G + DVV  T +++  
Sbjct: 515 LFNEMLDVGIQPDVTTSSV-LIDMLCKKGKVIEANKLLEVVIQRGCILDVVTCTTLVKGL 573

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV--- 189
               +  +A ++F++M   G  PN  T A L+KGL  +  GN KI  +  K ++      
Sbjct: 574 CMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQS--GNIKIALELHKNMLSDTSPY 631

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G   +PNA +Y+ + +   +  + DEAR L ++MKA G +PD
Sbjct: 632 GINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPD 673



 Score = 73.6 bits (179), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 43/145 (29%), Positives = 74/145 (51%), Gaps = 11/145 (7%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K+G   EA +L   +  +G + D+V ++ +I+      +  EA  +FM M   G
Sbjct: 353 LIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLG 412

Query: 153 VAPNAYTYAVLIKGLAAAADGN------AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEA 206
             P+A TY  L+KGL    + N       ++L D  +Y     G   +P   +Y+ + + 
Sbjct: 413 CRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRY-----GIKCKPTLISYSIIIDG 467

Query: 207 FVRAQKVDEARGLLQQMKAKGFVPD 231
             + ++ DEAR L ++MKA+G +PD
Sbjct: 468 LCKDRREDEARELFEEMKAQGIMPD 492



 Score = 73.2 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 43/145 (29%), Positives = 74/145 (51%), Gaps = 11/145 (7%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K+G   EA +L   +  +G + D+V ++ +I+      +  EA  +FM M   G
Sbjct: 60  LIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLG 119

Query: 153 VAPNAYTYAVLIKGLAAAADGN------AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEA 206
             P+A TY  L+KGL    + N       ++L D  +Y     G   +P   +Y+ + + 
Sbjct: 120 CRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRY-----GIKCKPTLISYSIIIDG 174

Query: 207 FVRAQKVDEARGLLQQMKAKGFVPD 231
             + ++ DEAR L ++MKA+G +PD
Sbjct: 175 LCKDRREDEARELFKEMKAQGMMPD 199



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/142 (30%), Positives = 73/142 (51%), Gaps = 5/142 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L KD    EA +LF ++K +G MPDV+++T++I  +  +G+ ++A  +F  ML  G
Sbjct: 171 IIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVG 230

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+  T  VLI           K++ +A + L  MV +G   +  TY+ + +      +
Sbjct: 231 IQPDVTTSGVLIDMFCK----EGKVI-EANELLEVMVHRGCILDIVTYSTLIKGLCMKHR 285

Query: 213 VDEARGLLQQMKAKGFVPDEKA 234
           + EA  L   MK  G  PD  A
Sbjct: 286 ISEATQLFMSMKKLGCRPDAIA 307



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 79/159 (49%), Gaps = 16/159 (10%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQ-IKDKGHM-----PDVVAHT 126
           ++F KM+  G   + V    +   L + G    AL+L  + + D G       PDV++++
Sbjct: 765 QLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYS 824

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
            +I+     G+  EA  +F  M A GV PN  +Y  LI G   +       L DA+    
Sbjct: 825 IIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGK-----LEDAKHLFN 879

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           EMV +G++ NA TY+ +   F +  ++D+A  L Q+M+A
Sbjct: 880 EMVDQGVQLNAVTYSVMIHGFCKEGQIDKA--LFQKMEA 916



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/161 (26%), Positives = 77/161 (47%), Gaps = 14/161 (8%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+   M   G   N V    +   L  +    EA QLF +++  G +PDVV +  +++  
Sbjct: 730 ELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGL 789

Query: 133 ASAGQGKEALRVFMRMLA------SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
              G  K AL +  +ML+      +   P+  +Y+++I GL      +     +A++   
Sbjct: 790 CQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGRED-----EARELFK 844

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
           EM   G+ PN  +YT++   F R+ K+++A+ L  +M  +G
Sbjct: 845 EMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQG 885



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/139 (28%), Positives = 74/139 (53%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L KD    EA +LF ++K +G MPDV+++T +I  +  +G+ ++A  +F  ML  G
Sbjct: 464 IIDGLCKDRREDEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVG 523

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+  T +VLI  L        K++ +A K L  ++ +G   +  T T + +      +
Sbjct: 524 IQPDVTTSSVLIDMLCK----KGKVI-EANKLLEVVIQRGCILDVVTCTTLVKGLCMKHR 578

Query: 213 VDEARGLLQQMKAKGFVPD 231
           + +A  L  +M+  G +P+
Sbjct: 579 ISKATQLFLKMQKLGCMPN 597



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 13/164 (7%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F++M   G+  +      + D   K+G   EA +L   +  +G + D+V ++ +I+   
Sbjct: 222 LFNEMLDVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVHRGCILDIVTYSTLIKGLC 281

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN------AKILGDAQKYLME 187
              +  EA ++FM M   G  P+A  Y  L+KGL      N       ++L D  +Y + 
Sbjct: 282 MKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGI- 340

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              K +RP+  T + + +   +  KV EA  LL+ M  +G + D
Sbjct: 341 ---KCIRPDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILD 381


>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 84/159 (52%), Gaps = 9/159 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM-PDVVAHTAVIEAY 132
           +  +M  +GL    +    + D + K G T  AL L  ++++  H+ P+VV ++A+I++ 
Sbjct: 206 LLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSL 265

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+  +A  +F  M   G+ P+ +TY  +I G  ++   +     DA++ L EM+ + 
Sbjct: 266 CKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWS-----DAEQLLQEMLERK 320

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + P+  TY A+  AFV+  K  EA  L  +M  +G +P+
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPN 359



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 76/139 (54%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D+L KDG   +A  LF ++++KG  PD+  + ++I  + S+G+  +A ++   ML   
Sbjct: 261 IIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERK 320

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           ++P+  TY  LI   A   +G      +A++   EM+ +G+ PN  TY+++ + F +  +
Sbjct: 321 ISPDVVTYNALIN--AFVKEGK---FFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNR 375

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +D A  +   M  KG  P+
Sbjct: 376 LDAAEHMFYLMATKGCSPN 394



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 8/159 (5%)

Query: 74  LQEIFH-KMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           LQE+   K+  + +T NA  + +A  K+G   EA +L+ ++  +G +P+ + ++++I+ +
Sbjct: 313 LQEMLERKISPDVVTYNA--LINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGF 370

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               +   A  +F  M   G +PN  T+  LI G   A     K + D  + L EM   G
Sbjct: 371 CKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGA-----KRIDDGMELLHEMTETG 425

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +  +  TY  +   F     ++ A  LLQ+M + G  PD
Sbjct: 426 LVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPD 464



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 68/153 (44%), Gaps = 8/153 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E++ +M   G+  + +    M D L K     EA Q+F  +  K   P+VV  T +I  
Sbjct: 531 EELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLING 590

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y  AG+  + L +F  M   G+  NA TY  LI G     + N      A     EM+  
Sbjct: 591 YCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNING-----ALDIFQEMISS 645

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           G+ P+  T   +       +++  A  +L++++
Sbjct: 646 GVYPDTITIRNMLTGLWSKEELKRAVAMLEKLQ 678



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 69/147 (46%), Gaps = 5/147 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L  +G   EA +L+ ++  +G +PD + ++++I+      +  EA ++F  M +  
Sbjct: 517 LISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKS 576

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            +PN  T+  LI G   A       + D  +   EM  +G+  NA TY  +   F +   
Sbjct: 577 FSPNVVTFTTLINGYCKAGR-----VDDGLELFCEMGRRGIVANAITYITLICGFRKVGN 631

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEAL 239
           ++ A  + Q+M + G  PD   ++  L
Sbjct: 632 INGALDIFQEMISSGVYPDTITIRNML 658



 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 72/157 (45%), Gaps = 7/157 (4%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F K+   GL  + V    +   L  +    EAL LF Q+ +    P+VV  T ++     
Sbjct: 137 FGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCR 196

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            G+  EA+ +  RM+  G+ P   TY  ++ G+    D     L   +K  ME V   + 
Sbjct: 197 EGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGD-TVSALNLLRK--MEEVSH-II 252

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           PN   Y+A+ ++  +  +  +A+ L  +M+ KG  PD
Sbjct: 253 PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPD 289



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 83/192 (43%), Gaps = 24/192 (12%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIK------DKGH-----MPD 121
           ++  +M + GL  + V    + D L  +G   +AL++F  ++      D  H      PD
Sbjct: 451 DLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPD 510

Query: 122 VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDA 181
           V  +  +I    + G+  EA  ++  M   G+ P+  TY+ +I GL   +      L +A
Sbjct: 511 VQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSR-----LDEA 565

Query: 182 QKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
            +    M  K   PN  T+T +   + +A +VD+   L  +M  +G V +       +  
Sbjct: 566 TQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIC- 624

Query: 242 KRGQGFRGVINI 253
               GFR V NI
Sbjct: 625 ----GFRKVGNI 632



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/195 (22%), Positives = 80/195 (41%), Gaps = 27/195 (13%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +F+ M T+G + N +    + D         + ++L  ++ + G + D   +  +I  
Sbjct: 380 EHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHG 439

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG- 190
           +   G    AL +   M++SG+ P+  T   L+ GL      N K L DA +    M   
Sbjct: 440 FYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLC----DNGK-LKDALEMFKVMQKS 494

Query: 191 ----------KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD--------E 232
                      G+ P+  TY  +    +   K  EA  L ++M  +G VPD        +
Sbjct: 495 KKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMID 554

Query: 233 KAVKEALIDKRGQGF 247
              K++ +D+  Q F
Sbjct: 555 GLCKQSRLDEATQMF 569



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 65/151 (43%), Gaps = 8/151 (5%)

Query: 91  VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           +K F + SK      AL  F ++   G  PDVV    ++       +  EAL +F +M  
Sbjct: 121 IKCFCSCSKLPF---ALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFE 177

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
           +   PN  T+  L+ GL        +I+ +A   L  M+  G++P   TY  + +   + 
Sbjct: 178 TTCRPNVVTFTTLMNGLCR----EGRIV-EAVALLDRMMEDGLQPTQITYGTIVDGMCKK 232

Query: 211 QKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
                A  LL++M+    +     +  A+ID
Sbjct: 233 GDTVSALNLLRKMEEVSHIIPNVVIYSAIID 263


>gi|9502388|gb|AAF88095.1|AC025417_23 T12C24.15 [Arabidopsis thaliana]
          Length = 735

 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 90/192 (46%), Gaps = 21/192 (10%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+  KM    +  +AVK   + D L KDG    A  LF +++ KG   D++ +T +I  +
Sbjct: 233 ELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGF 292

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             AG+  +  ++   M+   + P+   ++ LI             L +A++   EM+ +G
Sbjct: 293 CYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGK-----LREAEELHKEMIQRG 347

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA--------VKEALIDK-- 242
           + P+  TYT++ + F +  ++D+A  +L  M +KG  P+ +          K  LID   
Sbjct: 348 ISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGL 407

Query: 243 ---RGQGFRGVI 251
              R    RGV+
Sbjct: 408 ELFRKMSLRGVV 419



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 68/139 (48%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   K+G   EA +L  ++  +G  PD V +T++I+ +    Q  +A  +   M++ G
Sbjct: 323 LIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKG 382

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN  T+ +LI G        A ++ D  +   +M  +G+  +  TY  + + F    K
Sbjct: 383 CGPNIRTFNILINGYC-----KANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGK 437

Query: 213 VDEARGLLQQMKAKGFVPD 231
           ++ A+ L Q+M ++   PD
Sbjct: 438 LEVAKELFQEMVSRRVRPD 456



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 66/145 (45%), Gaps = 11/145 (7%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +   K  L  + L+LF ++  +G + D V +  +I+ +   G+ + A  +F  M++  
Sbjct: 393 LINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRR 452

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL--MEMVGKG-MRPNAGTYTAVFEAFVR 209
           V P+  +Y +L+ GL           G+ +K L   E + K  M  + G Y  +      
Sbjct: 453 VRPDIVSYKILLDGLCDN--------GEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCN 504

Query: 210 AQKVDEARGLLQQMKAKGFVPDEKA 234
           A KVD+A  L   +  KG  PD K 
Sbjct: 505 ASKVDDAWDLFCSLPLKGVKPDVKT 529



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 69/139 (49%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L  +G   EAL+L  ++ + GH P ++   A++      G+  +A+ +  RM+ +G
Sbjct: 148 LINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETG 207

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN  TY  ++K +  +  G   +   A + L +M  + ++ +A  Y+ + +   +   
Sbjct: 208 FQPNEVTYGPVLKVMCKS--GQTAL---AMELLRKMEERKIKLDAVKYSIIIDGLCKDGS 262

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +D A  L  +M+ KGF  D
Sbjct: 263 LDNAFNLFNEMEIKGFKAD 281



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 76/168 (45%), Gaps = 8/168 (4%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+F +M +  +  + V    + D L  +G   +AL++F +I+      D+  +  +I  
Sbjct: 442 KELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHG 501

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
             +A +  +A  +F  +   GV P+  TY ++I GL          L +A     +M   
Sbjct: 502 MCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGS-----LSEADLLFRKMEED 556

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
           G  PN  TY  +  A +      ++  L++++K  GF  D   ++ AL
Sbjct: 557 GHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTLRFAL 604



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 74/159 (46%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F KM   G+  + V    +     + G    A +LF ++  +   PD+V++  +++  
Sbjct: 408 ELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGL 467

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+ ++AL +F ++  S +  +   Y ++I G+      NA  + DA      +  KG
Sbjct: 468 CDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMC-----NASKVDDAWDLFCSLPLKG 522

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           ++P+  TY  +     +   + EA  L ++M+  G  P+
Sbjct: 523 VKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPN 561



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 65/161 (40%), Gaps = 25/161 (15%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE------------ 140
           M   L K G   EA  LF ++++ GH P+   +  +I A+   G   +            
Sbjct: 533 MIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCG 592

Query: 141 ----------ALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
                     AL    RML +G  P+ +T+  L++      + NA +  DA      M  
Sbjct: 593 FSVDASTLRFALSTLARMLKAGHEPDVFTFTTLLRPFCL--EENASVY-DAPTLFKNMKA 649

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            G +PN  TY  V +  +    + +  G+L QM  +G  P+
Sbjct: 650 MGYKPNVVTYNTVIKGLLNGNMISQVPGVLDQMFERGCQPN 690



 Score = 53.9 bits (128), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 76/187 (40%), Gaps = 28/187 (14%)

Query: 70  DPRNLQEIFHKMRTE------GLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVV 123
           +P    EIF K+         G+ N  +      SK     +A  LF  +  KG  PDV 
Sbjct: 472 EPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASK---VDDAWDLFCSLPLKGVKPDVK 528

Query: 124 AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADG--NAKILGDA 181
            +  +I      G   EA  +F +M   G +PN  TY +LI+      D   +AK++ + 
Sbjct: 529 TYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEI 588

Query: 182 QKY---------------LMEMVGKGMRPNAGTYTAVFEAFVRAQK--VDEARGLLQQMK 224
           ++                L  M+  G  P+  T+T +   F   +   V +A  L + MK
Sbjct: 589 KRCGFSVDASTLRFALSTLARMLKAGHEPDVFTFTTLLRPFCLEENASVYDAPTLFKNMK 648

Query: 225 AKGFVPD 231
           A G+ P+
Sbjct: 649 AMGYKPN 655



 Score = 53.9 bits (128), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 71/167 (42%), Gaps = 13/167 (7%)

Query: 74  LQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           L+ I H + T  +  N       LS       A     +I   G+ PD V  + +I    
Sbjct: 100 LKGIAHNLYTLSIMINCCCRCRKLSL------AFSAMGKIIKLGYEPDTVTFSTLINGLC 153

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G+  EAL +  RM+  G  P   T   L+ GL      N K+  DA   +  MV  G 
Sbjct: 154 LEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCL----NGKV-SDAVLLIDRMVETGF 208

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
           +PN  TY  V +   ++ +   A  LL++M+ +    D  AVK ++I
Sbjct: 209 QPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLD--AVKYSII 253



 Score = 40.0 bits (92), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 34/73 (46%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L ++   ++A  LF  +K  G+ P+VV +  VI+   +     +   V  +M   G  P
Sbjct: 630 CLEENASVYDAPTLFKNMKAMGYKPNVVTYNTVIKGLLNGNMISQVPGVLDQMFERGCQP 689

Query: 156 NAYTYAVLIKGLA 168
           NA T +  I GL 
Sbjct: 690 NAVTKSTFISGLC 702


>gi|15221411|ref|NP_177623.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
 gi|75194055|sp|Q9S7Q2.1|PP124_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g74850, chloroplastic; AltName: Full=Protein PLASTID
           TRANSCRIPTIONALLY ACTIVE 2; Flags: Precursor
 gi|5882738|gb|AAD55291.1|AC008263_22 Contains 3 PF|01535 DUF17 domains [Arabidopsis thaliana]
 gi|12323908|gb|AAG51934.1|AC013258_28 hypothetical protein; 81052-84129 [Arabidopsis thaliana]
 gi|332197518|gb|AEE35639.1| plastid transcriptionally active 2 [Arabidopsis thaliana]
          Length = 862

 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 87/179 (48%), Gaps = 14/179 (7%)

Query: 76  EIFHKMRTEG-----LTNNAVKMFDALSKDGLTHEAL-QLFAQIKDKGHMPDVVAHTAVI 129
           E+  +M+ E      LT N V   +A ++ GL  E L  LFA+++ +G  PD+V +  ++
Sbjct: 197 ELLDRMKNEKISPSILTYNTV--INACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLL 254

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
            A A  G G EA  VF  M   G+ P+  TY+ L++       G  + L      L EM 
Sbjct: 255 SACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETF-----GKLRRLEKVCDLLGEMA 309

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFR 248
             G  P+  +Y  + EA+ ++  + EA G+  QM+A G  P+       L++  GQ  R
Sbjct: 310 SGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYS-VLLNLFGQSGR 367



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 68/143 (47%), Gaps = 6/143 (4%)

Query: 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
            +   L  ++   G +PD+ ++  ++EAYA +G  KEA+ VF +M A+G  PNA TY+VL
Sbjct: 299 EKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVL 358

Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           +        G +    D ++  +EM      P+A TY  + E F       E   L   M
Sbjct: 359 LNLF-----GQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDM 413

Query: 224 KAKGFVPDEKAVKEALIDKRGQG 246
             +   PD +   E +I   G+G
Sbjct: 414 VEENIEPDMETY-EGIIFACGKG 435



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 74/153 (48%), Gaps = 6/153 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +A +K G   EA+ +F Q++  G  P+   ++ ++  +  +G+  +  ++F+ M +S 
Sbjct: 323 LLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSN 382

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+A TY +LI+       G      +      +MV + + P+  TY  +  A  +   
Sbjct: 383 TDPDAATYNILIEVF-----GEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGL 437

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
            ++AR +LQ M A   VP  KA    +I+  GQ
Sbjct: 438 HEDARKILQYMTANDIVPSSKAYT-GVIEAFGQ 469



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 4/139 (2%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M   L ++GL  + L++F ++  +G    V ++TA+I AY   G+ + +L +  RM    
Sbjct: 147 MISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEK 206

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           ++P+  TY  +I   A        +LG       EM  +G++P+  TY  +  A      
Sbjct: 207 ISPSILTYNTVINACARGGLDWEGLLG----LFAEMRHEGIQPDIVTYNTLLSACAIRGL 262

Query: 213 VDEARGLLQQMKAKGFVPD 231
            DEA  + + M   G VPD
Sbjct: 263 GDEAEMVFRTMNDGGIVPD 281



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 73/166 (43%), Gaps = 8/166 (4%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +FH M  E +  +      +  A  K GL  +A ++   +     +P   A+T VIEA+ 
Sbjct: 409 LFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFG 468

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            A   +EAL  F  M   G  P+  T+  L+   A        ++ +++  L  +V  G+
Sbjct: 469 QAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGG-----LVKESEAILSRLVDSGI 523

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
             N  T+ A  EA+ +  K +EA      M+     PDE+ ++  L
Sbjct: 524 PRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVL 569



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 5/138 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +A  +  L  EAL  F  + + G  P +    +++ ++A  G  KE+  +  R++ SG
Sbjct: 463 VIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSG 522

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +  N  T+   I+              +A K  ++M      P+  T  AV   +  A+ 
Sbjct: 523 IPRNRDTFNAQIEAYKQGGK-----FEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFARL 577

Query: 213 VDEARGLLQQMKAKGFVP 230
           VDE R   ++MKA   +P
Sbjct: 578 VDECREQFEEMKASDILP 595


>gi|449477323|ref|XP_004154991.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g18900-like [Cucumis sativus]
          Length = 874

 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 80/172 (46%), Gaps = 9/172 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M+  G   + V    + D  +K G    A+ ++ +++D G  PD   ++ +I    
Sbjct: 436 VFKQMQEAGCEPDRVTYCTLIDIHAKSGFLDVAMGMYEKMQDAGLTPDTFTYSVMINCLG 495

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG    A R+F RM+  G  PN  TY ++I     A    A+    A K   +M   G 
Sbjct: 496 KAGHLNAAHRLFCRMVDEGCVPNLVTYNIMI-----ALQAKARNYEIALKLYRDMQQSGF 550

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
            P+  TY  V E       ++EA G+  +M+ K +VPDE  V   L+D  G+
Sbjct: 551 EPDKVTYCIVMEVLGHCGFLEEAEGIFIEMQKKNWVPDE-PVYGLLVDLWGK 601



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 81/162 (50%), Gaps = 8/162 (4%)

Query: 74  LQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           + ++  +M  +G   N V   ++  +  +     +A+ +F Q+++ G  PD V +  +I+
Sbjct: 398 INKLLDQMIKDGCQPNVVTYNRIIHSYGRANYLQDAVNVFKQMQEAGCEPDRVTYCTLID 457

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
            +A +G    A+ ++ +M  +G+ P+ +TY+V+I  L  A   NA     A +    MV 
Sbjct: 458 IHAKSGFLDVAMGMYEKMQDAGLTPDTFTYSVMINCLGKAGHLNA-----AHRLFCRMVD 512

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           +G  PN  TY  +     +A+  + A  L + M+  GF PD+
Sbjct: 513 EGCVPNLVTYNIMIALQAKARNYEIALKLYRDMQQSGFEPDK 554



 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 83/187 (44%), Gaps = 33/187 (17%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           ++ KM+  GLT +      M + L K G  + A +LF ++ D+G +P++V +  +I   A
Sbjct: 471 MYEKMQDAGLTPDTFTYSVMINCLGKAGHLNAAHRLFCRMVDEGCVPNLVTYNIMIALQA 530

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIK---------------------------- 165
            A   + AL+++  M  SG  P+  TY ++++                            
Sbjct: 531 KARNYEIALKLYRDMQQSGFEPDKVTYCIVMEVLGHCGFLEEAEGIFIEMQKKNWVPDEP 590

Query: 166 --GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
             GL     G +  +  A ++   M+  G++PN  T  ++  AF+R  ++ +A  LLQ M
Sbjct: 591 VYGLLVDLWGKSGNVQKAWEWYHAMLKAGLKPNVPTCNSLLSAFLRVHQLSDAYQLLQSM 650

Query: 224 KAKGFVP 230
              G  P
Sbjct: 651 LTFGLKP 657



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/142 (23%), Positives = 63/142 (44%), Gaps = 8/142 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +++  M+  G   + V    + + L   G   EA  +F +++ K  +PD   +  +++ +
Sbjct: 540 KLYRDMQQSGFEPDKVTYCIVMEVLGHCGFLEEAEGIFIEMQKKNWVPDEPVYGLLVDLW 599

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             +G  ++A   +  ML +G+ PN  T   L+             L DA + L  M+  G
Sbjct: 600 GKSGNVQKAWEWYHAMLKAGLKPNVPTCNSLLSAFLRVHQ-----LSDAYQLLQSMLTFG 654

Query: 193 MRPNAGTYTAVFEAFVRAQKVD 214
           ++P+  TYT +      AQ  D
Sbjct: 655 LKPSLQTYTLLLSCCTDAQTND 676



 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 10/125 (8%)

Query: 107 LQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKG 166
           L+   + +  GH      +T +I     A Q     ++  +M+  G  PN  TY  +I  
Sbjct: 369 LKRLPRFRHDGH-----TYTTMIGLLGRAKQFAAINKLLDQMIKDGCQPNVVTYNRIIHS 423

Query: 167 LAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK 226
                 G A  L DA     +M   G  P+  TY  + +   ++  +D A G+ ++M+  
Sbjct: 424 Y-----GRANYLQDAVNVFKQMQEAGCEPDRVTYCTLIDIHAKSGFLDVAMGMYEKMQDA 478

Query: 227 GFVPD 231
           G  PD
Sbjct: 479 GLTPD 483


>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
 gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
 gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
 gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 84/159 (52%), Gaps = 9/159 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM-PDVVAHTAVIEAY 132
           +  +M  +GL    +    + D + K G T  AL L  ++++  H+ P+VV ++A+I++ 
Sbjct: 206 LLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSL 265

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+  +A  +F  M   G+ P+ +TY  +I G  ++   +     DA++ L EM+ + 
Sbjct: 266 CKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWS-----DAEQLLQEMLERK 320

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + P+  TY A+  AFV+  K  EA  L  +M  +G +P+
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPN 359



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 76/139 (54%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D+L KDG   +A  LF ++++KG  PD+  + ++I  + S+G+  +A ++   ML   
Sbjct: 261 IIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERK 320

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           ++P+  TY  LI   A   +G      +A++   EM+ +G+ PN  TY+++ + F +  +
Sbjct: 321 ISPDVVTYNALIN--AFVKEGK---FFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNR 375

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +D A  +   M  KG  P+
Sbjct: 376 LDAAEHMFYLMATKGCSPN 394



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 8/159 (5%)

Query: 74  LQEIFH-KMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           LQE+   K+  + +T NA  + +A  K+G   EA +L+ ++  +G +P+ + ++++I+ +
Sbjct: 313 LQEMLERKISPDVVTYNA--LINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGF 370

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               +   A  +F  M   G +PN  T+  LI G   A     K + D  + L EM   G
Sbjct: 371 CKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGA-----KRIDDGMELLHEMTETG 425

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +  +  TY  +   F     ++ A  LLQ+M + G  PD
Sbjct: 426 LVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPD 464



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 68/153 (44%), Gaps = 8/153 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E++ +M   G+  + +    M D L K     EA Q+F  +  K   P+VV  T +I  
Sbjct: 531 EELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLING 590

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y  AG+  + L +F  M   G+  NA TY  LI G     + N      A     EM+  
Sbjct: 591 YCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNING-----ALDIFQEMISS 645

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           G+ P+  T   +       +++  A  +L++++
Sbjct: 646 GVYPDTITIRNMLTGLWSKEELKRAVAMLEKLQ 678



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 69/147 (46%), Gaps = 5/147 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L  +G   EA +L+ ++  +G +PD + ++++I+      +  EA ++F  M +  
Sbjct: 517 LISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKS 576

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            +PN  T+  LI G   A       + D  +   EM  +G+  NA TY  +   F +   
Sbjct: 577 FSPNVVTFTTLINGYCKAGR-----VDDGLELFCEMGRRGIVANAITYITLICGFRKVGN 631

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEAL 239
           ++ A  + Q+M + G  PD   ++  L
Sbjct: 632 INGALDIFQEMISSGVYPDTITIRNML 658



 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 72/157 (45%), Gaps = 7/157 (4%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F K+   GL  + V    +   L  +    EAL LF Q+ +    P+VV  T ++     
Sbjct: 137 FGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCR 196

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            G+  EA+ +  RM+  G+ P   TY  ++ G+    D     L   +K  ME V   + 
Sbjct: 197 EGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGD-TVSALNLLRK--MEEVSH-II 252

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           PN   Y+A+ ++  +  +  +A+ L  +M+ KG  PD
Sbjct: 253 PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPD 289



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 83/192 (43%), Gaps = 24/192 (12%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIK------DKGH-----MPD 121
           ++  +M + GL  + V    + D L  +G   +AL++F  ++      D  H      PD
Sbjct: 451 DLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPD 510

Query: 122 VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDA 181
           V  +  +I    + G+  EA  ++  M   G+ P+  TY+ +I GL   +      L +A
Sbjct: 511 VQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSR-----LDEA 565

Query: 182 QKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
            +    M  K   PN  T+T +   + +A +VD+   L  +M  +G V +       +  
Sbjct: 566 TQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIC- 624

Query: 242 KRGQGFRGVINI 253
               GFR V NI
Sbjct: 625 ----GFRKVGNI 632



 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 44/195 (22%), Positives = 80/195 (41%), Gaps = 27/195 (13%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +F+ M T+G + N +    + D         + ++L  ++ + G + D   +  +I  
Sbjct: 380 EHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHG 439

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG- 190
           +   G    AL +   M++SG+ P+  T   L+ GL      N K L DA +    M   
Sbjct: 440 FYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLC----DNGK-LKDALEMFKVMQKS 494

Query: 191 ----------KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD--------E 232
                      G+ P+  TY  +    +   K  EA  L ++M  +G VPD        +
Sbjct: 495 KKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMID 554

Query: 233 KAVKEALIDKRGQGF 247
              K++ +D+  Q F
Sbjct: 555 GLCKQSRLDEATQMF 569



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 8/151 (5%)

Query: 91  VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           +K F + SK      AL  F +I   G  PDVV    ++       +  EAL +F +M  
Sbjct: 121 IKCFCSCSKLPF---ALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFE 177

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
           +   PN  T+  L+ GL        +I+ +A   L  M+  G++P   TY  + +   + 
Sbjct: 178 TTCRPNVVTFTTLMNGLCR----EGRIV-EAVALLDRMMEDGLQPTQITYGTIVDGMCKK 232

Query: 211 QKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
                A  LL++M+    +     +  A+ID
Sbjct: 233 GDTVSALNLLRKMEEVSHIIPNVVIYSAIID 263


>gi|134302847|gb|ABO70667.1| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 84/159 (52%), Gaps = 9/159 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM-PDVVAHTAVIEAY 132
           +  +M  +GL    +    + D + K G T  AL L  ++++  H+ P+VV ++A+I++ 
Sbjct: 206 LLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSL 265

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+  +A  +F  M   G+ P+ +TY  +I G  ++   +     DA++ L EM+ + 
Sbjct: 266 CKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWS-----DAEQLLQEMLERK 320

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + P+  TY A+  AFV+  K  EA  L  +M  +G +P+
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPN 359



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 76/139 (54%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D+L KDG   +A  LF ++++KG  PD+  + ++I  + S+G+  +A ++   ML   
Sbjct: 261 IIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERK 320

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           ++P+  TY  LI   A   +G      +A++   EM+ +G+ PN  TY+++ + F +  +
Sbjct: 321 ISPDVVTYNALIN--AFVKEGK---FFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNR 375

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +D A  +   M  KG  P+
Sbjct: 376 LDAAEHMFYLMATKGCSPN 394



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 8/159 (5%)

Query: 74  LQEIFH-KMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           LQE+   K+  + +T NA  + +A  K+G   EA +L+ ++  +G +P+ + ++++I+ +
Sbjct: 313 LQEMLERKISPDVVTYNA--LINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGF 370

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               +   A  +F  M   G +PN  T+  LI G   A     K + D  + L EM   G
Sbjct: 371 CKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGA-----KRIDDGMELLHEMTETG 425

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +  +  TY  +   F     ++ A  LLQ+M + G  PD
Sbjct: 426 LVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPD 464



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 68/153 (44%), Gaps = 8/153 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E++ +M   G+  + +    M D L K     EA Q+F  +  K   P+VV  T +I  
Sbjct: 531 EELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLING 590

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y  AG+  + L +F  M   G+  NA TY  LI G     + N      A     EM+  
Sbjct: 591 YCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNING-----ALDIFQEMISS 645

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           G+ P+  T   +       +++  A  +L++++
Sbjct: 646 GVYPDTITIRNMLTGLWSKEELKRAVAMLEKLQ 678



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 69/147 (46%), Gaps = 5/147 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L  +G   EA +L+ ++  +G +PD + ++++I+      +  EA ++F  M +  
Sbjct: 517 LISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKS 576

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            +PN  T+  LI G   A       + D  +   EM  +G+  NA TY  +   F +   
Sbjct: 577 FSPNVVTFTTLINGYCKAGR-----VDDGLELFCEMGRRGIVANAITYITLICGFRKVGN 631

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEAL 239
           ++ A  + Q+M + G  PD   ++  L
Sbjct: 632 INGALDIFQEMISSGVYPDTITIRNML 658



 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 72/157 (45%), Gaps = 7/157 (4%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F K+   GL  + V    +   L  +    EAL LF Q+ +    P+VV  T ++     
Sbjct: 137 FGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCR 196

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            G+  EA+ +  RM+  G+ P   TY  ++ G+    D     L   +K  ME V   + 
Sbjct: 197 EGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGD-TVSALNLLRK--MEEVSH-II 252

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           PN   Y+A+ ++  +  +  +A+ L  +M+ KG  PD
Sbjct: 253 PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPD 289



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 83/192 (43%), Gaps = 24/192 (12%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIK------DKGH-----MPD 121
           ++  +M + GL  + V    + D L  +G   +AL++F  ++      D  H      PD
Sbjct: 451 DLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPD 510

Query: 122 VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDA 181
           V  +  +I    + G+  EA  ++  M   G+ P+  TY+ +I GL   +      L +A
Sbjct: 511 VQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSR-----LDEA 565

Query: 182 QKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
            +    M  K   PN  T+T +   + +A +VD+   L  +M  +G V +       +  
Sbjct: 566 TQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIC- 624

Query: 242 KRGQGFRGVINI 253
               GFR V NI
Sbjct: 625 ----GFRKVGNI 632



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 8/154 (5%)

Query: 88  NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMR 147
           N  +K F + SK      AL  F +I   G  PDVV  T ++       +  EAL +F +
Sbjct: 118 NILIKCFCSCSKLPF---ALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALNLFHQ 174

Query: 148 MLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAF 207
           M  +   PN  T+  L+ GL        +I+ +A   L  M+  G++P   TY  + +  
Sbjct: 175 MFETTCRPNVVTFTTLMNGLCR----EGRIV-EAVALLDRMMEDGLQPTQITYGTIVDGM 229

Query: 208 VRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
            +      A  LL++M+    +     +  A+ID
Sbjct: 230 CKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIID 263



 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 44/195 (22%), Positives = 80/195 (41%), Gaps = 27/195 (13%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +F+ M T+G + N +    + D         + ++L  ++ + G + D   +  +I  
Sbjct: 380 EHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHG 439

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG- 190
           +   G    AL +   M++SG+ P+  T   L+ GL      N K L DA +    M   
Sbjct: 440 FYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLC----DNGK-LKDALEMFKVMQKS 494

Query: 191 ----------KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD--------E 232
                      G+ P+  TY  +    +   K  EA  L ++M  +G VPD        +
Sbjct: 495 KKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMID 554

Query: 233 KAVKEALIDKRGQGF 247
              K++ +D+  Q F
Sbjct: 555 GLCKQSRLDEATQMF 569


>gi|125548610|gb|EAY94432.1| hypothetical protein OsI_16202 [Oryza sativa Indica Group]
 gi|125590647|gb|EAZ30997.1| hypothetical protein OsJ_15079 [Oryza sativa Japonica Group]
          Length = 485

 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 82/160 (51%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           Q +F +M++ G+    V    M   + + G    A  L  ++ + G  PDV  + A+I+ 
Sbjct: 136 QNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQG 195

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G+ ++A  VF +M   G+ PNA  + +LI   A    G+A+ + +  +   EM  +
Sbjct: 196 LCRVGRIEDARGVFEKMCGRGMKPNAVVFTILID--AHCKKGDAETMLELHR---EMRER 250

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G+RP+A TY A+     RA+ +  A G++ +M++ G  PD
Sbjct: 251 GVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPD 290



 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 79/164 (48%), Gaps = 8/164 (4%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D   + E+  +MR  G+  +AV    + + L +      A  +  +++  G  PD V +T
Sbjct: 236 DAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYT 295

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
            +I+ Y    +   A+ +   M+A GV  +  TY  LI GL+ A         DA++ L 
Sbjct: 296 TLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRS-----ADAERVLG 350

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           EM+  G+ P+  TYT V +AF R   V     LL++M+ KG  P
Sbjct: 351 EMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKP 394



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 9/161 (5%)

Query: 76  EIFHKMRTE-GLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           E  H+  +E G+T +      +   L + G   +A  +F ++  +G  P+ V  T +I+A
Sbjct: 171 ETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDA 230

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +   G  +  L +   M   GV P+A TY  ++ GL  A D     L  A   ++EM   
Sbjct: 231 HCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARD-----LKSASGIVVEMRSA 285

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           G+RP+  TYT + + + + +++D A  + Q M A+G   DE
Sbjct: 286 GLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDE 326



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 9/144 (6%)

Query: 92  KMFDALSKD----GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMR 147
           K+F+ L +D    G    A  +F +++ +G    VV+   +I     AG    A  +  R
Sbjct: 117 KLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETLHRR 176

Query: 148 MLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAF 207
           M  +GV P+ YTY  LI+GL          + DA+    +M G+GM+PNA  +T + +A 
Sbjct: 177 MSEAGVTPDVYTYGALIQGLCRVGR-----IEDARGVFEKMCGRGMKPNAVVFTILIDAH 231

Query: 208 VRAQKVDEARGLLQQMKAKGFVPD 231
            +    +    L ++M+ +G  PD
Sbjct: 232 CKKGDAETMLELHREMRERGVRPD 255



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 8/166 (4%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D ++   I  +MR+ GL  + V    + D   K+     A+++   +  +G   D V +T
Sbjct: 271 DLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYT 330

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
           A+I   + AG+  +A RV   M+ +G+ P+  TY ++I       D    +     + L 
Sbjct: 331 ALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGL-----RLLK 385

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           EM  KG +P   TY  +   F +  ++  A  LL  M   G  PD+
Sbjct: 386 EMQNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDD 431



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 74/160 (46%), Gaps = 13/160 (8%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           EI   M  EG+  + V    +   LSK G + +A ++  ++ + G  PD   +T VI+A+
Sbjct: 312 EIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAF 371

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G  K  LR+   M   G  P   TY V++ G           + +A   L  M+  G
Sbjct: 372 CRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQ-----MKNADMLLNAMINIG 426

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK-AKGFVPD 231
           + P+  TY  + +   +  KV +    ++++K AKG VPD
Sbjct: 427 VSPDDITYNILLDGHCKHGKVTD----IEELKSAKGTVPD 462



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 8/117 (6%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DA  + G     L+L  ++++KG  P VV +  ++  +   GQ K A  +   M+  G
Sbjct: 367 VIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNAMINIG 426

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
           V+P+  TY +L+       DG+ K  G           KG  P+ G YT++    V+
Sbjct: 427 VSPDDITYNILL-------DGHCK-HGKVTDIEELKSAKGTVPDLGVYTSIVGEIVK 475


>gi|449440748|ref|XP_004138146.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18900-like [Cucumis sativus]
          Length = 874

 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 80/172 (46%), Gaps = 9/172 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M+  G   + V    + D  +K G    A+ ++ +++D G  PD   ++ +I    
Sbjct: 436 VFKQMQEAGCEPDRVTYCTLIDIHAKSGFLDVAMGMYEKMQDAGLTPDTFTYSVMINCLG 495

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG    A R+F RM+  G  PN  TY ++I     A    A+    A K   +M   G 
Sbjct: 496 KAGHLNAAHRLFCRMVDEGCVPNLVTYNIMI-----ALQAKARNYEIALKLYRDMQQSGF 550

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
            P+  TY  V E       ++EA G+  +M+ K +VPDE  V   L+D  G+
Sbjct: 551 EPDKVTYCIVMEVLGHCGFLEEAEGIFIEMQKKNWVPDE-PVYGLLVDLWGK 601



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 81/162 (50%), Gaps = 8/162 (4%)

Query: 74  LQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           + ++  +M  +G   N V   ++  +  +     +A+ +F Q+++ G  PD V +  +I+
Sbjct: 398 INKLLDQMIKDGCQPNVVTYNRIIHSYGRANYLQDAVNVFKQMQEAGCEPDRVTYCTLID 457

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
            +A +G    A+ ++ +M  +G+ P+ +TY+V+I  L  A   NA     A +    MV 
Sbjct: 458 IHAKSGFLDVAMGMYEKMQDAGLTPDTFTYSVMINCLGKAGHLNA-----AHRLFCRMVD 512

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           +G  PN  TY  +     +A+  + A  L + M+  GF PD+
Sbjct: 513 EGCVPNLVTYNIMIALQAKARNYEIALKLYRDMQQSGFEPDK 554



 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 83/187 (44%), Gaps = 33/187 (17%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           ++ KM+  GLT +      M + L K G  + A +LF ++ D+G +P++V +  +I   A
Sbjct: 471 MYEKMQDAGLTPDTFTYSVMINCLGKAGHLNAAHRLFCRMVDEGCVPNLVTYNIMIALQA 530

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIK---------------------------- 165
            A   + AL+++  M  SG  P+  TY ++++                            
Sbjct: 531 KARNYEIALKLYRDMQQSGFEPDKVTYCIVMEVLGHCGFLEEAEGIFIEMQKKNWVPDEP 590

Query: 166 --GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
             GL     G +  +  A ++   M+  G++PN  T  ++  AF+R  ++ +A  LLQ M
Sbjct: 591 VYGLLVDLWGKSGNVQKAWEWYHAMLKAGLKPNVPTCNSLLSAFLRVHQLSDAYQLLQSM 650

Query: 224 KAKGFVP 230
              G  P
Sbjct: 651 LTFGLKP 657



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/142 (23%), Positives = 63/142 (44%), Gaps = 8/142 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +++  M+  G   + V    + + L   G   EA  +F +++ K  +PD   +  +++ +
Sbjct: 540 KLYRDMQQSGFEPDKVTYCIVMEVLGHCGFLEEAEGIFIEMQKKNWVPDEPVYGLLVDLW 599

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             +G  ++A   +  ML +G+ PN  T   L+             L DA + L  M+  G
Sbjct: 600 GKSGNVQKAWEWYHAMLKAGLKPNVPTCNSLLSAFLRVHQ-----LSDAYQLLQSMLTFG 654

Query: 193 MRPNAGTYTAVFEAFVRAQKVD 214
           ++P+  TYT +      AQ  D
Sbjct: 655 LKPSLQTYTLLLSCCTDAQTND 676



 Score = 45.8 bits (107), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 10/125 (8%)

Query: 107 LQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKG 166
           L+   + +  GH      +T +I     A Q     ++  +M+  G  PN  TY  +I  
Sbjct: 369 LKRLPRFRHDGH-----TYTTMIGLLGRAKQFAAINKLLDQMIKDGCQPNVVTYNRIIHS 423

Query: 167 LAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK 226
                 G A  L DA     +M   G  P+  TY  + +   ++  +D A G+ ++M+  
Sbjct: 424 Y-----GRANYLQDAVNVFKQMQEAGCEPDRVTYCTLIDIHAKSGFLDVAMGMYEKMQDA 478

Query: 227 GFVPD 231
           G  PD
Sbjct: 479 GLTPD 483


>gi|297806221|ref|XP_002870994.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316831|gb|EFH47253.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 819

 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 86/165 (52%), Gaps = 9/165 (5%)

Query: 71  PRN-LQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           P N +  +  KM+++G+  +A     +     +  L  EA Q+F ++K  G   D V + 
Sbjct: 259 PWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSHDKVTYN 318

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
           A+++ Y  + + KEA++V   M  +G +P+  TY  LI   A A DG   +L +A +   
Sbjct: 319 ALLDVYGKSHRPKEAMKVLNEMELNGFSPSIVTYNSLIS--AYARDG---MLDEAMELKN 373

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +M  KG +P+  TYT +   F RA KV+ A  + ++M+  G  P+
Sbjct: 374 QMAEKGTKPDVFTYTTLLSGFERAGKVESAMNIFEEMRNAGCKPN 418



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 81/167 (48%), Gaps = 8/167 (4%)

Query: 71  PRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P+   ++ ++M   G + + V    +  A ++DG+  EA++L  Q+ +KG  PDV  +T 
Sbjct: 330 PKEAMKVLNEMELNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTT 389

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           ++  +  AG+ + A+ +F  M  +G  PN  T+   IK       GN     D  K   E
Sbjct: 390 LLSGFERAGKVESAMNIFEEMRNAGCKPNICTFNAFIKMY-----GNRGKFVDMMKIFDE 444

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
           +   G+ P+  T+  +   F +     E  G+ ++MK  GFVP+ + 
Sbjct: 445 INVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERET 491



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 74/152 (48%), Gaps = 5/152 (3%)

Query: 97  LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
           L K+G    A  LF  +++ G   DV ++T++I A+A++G+ +EA+ VF +M   G  P 
Sbjct: 183 LGKEGRVSSAANLFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNVFKKMEEEGCKPT 242

Query: 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
             TY V++           KI    +K    M   G+ P+A TY  +     R     EA
Sbjct: 243 LITYNVILNVFGKMGTPWNKITSLVEK----MKSDGIAPDAYTYNTLITCCKRGSLHQEA 298

Query: 217 RGLLQQMKAKGFVPDEKAVKEALIDKRGQGFR 248
             + ++MKA GF  D K    AL+D  G+  R
Sbjct: 299 AQVFEEMKAAGFSHD-KVTYNALLDVYGKSHR 329



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 75/156 (48%), Gaps = 14/156 (8%)

Query: 75  QEIFHKMRTEGLT------NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
            E+   M+  G T      N+ + M    +  G + E L+   +I  KG  PD++++  V
Sbjct: 649 NEVLDYMKERGFTPSMATYNSLMYMHSRSADFGKSEEILR---EILAKGIKPDIISYNTV 705

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I AY    + ++A R+F  M  SG+ P+  TY   I   AA +     +  +A   +  M
Sbjct: 706 IYAYCRNTRMRDASRIFSEMRDSGIVPDVITYNTFIGSYAADS-----MFEEAIGVVRYM 760

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           +  G RPN  TY ++ + + +  + DEA+  ++ ++
Sbjct: 761 IKHGCRPNQNTYNSIVDGYCKLNRKDEAKLFVEDLR 796



 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 71/159 (44%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F +M+  G +++ V    + D   K     EA+++  +++  G  P +V + ++I AY
Sbjct: 300 QVFEEMKAAGFSHDKVTYNALLDVYGKSHRPKEAMKVLNEMELNGFSPSIVTYNSLISAY 359

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           A  G   EA+ +  +M   G  P+ +TY  L+ G   A       +  A     EM   G
Sbjct: 360 ARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGK-----VESAMNIFEEMRNAG 414

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +PN  T+ A  + +    K  +   +  ++   G  PD
Sbjct: 415 CKPNICTFNAFIKMYGNRGKFVDMMKIFDEINVCGLSPD 453



 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 68/135 (50%), Gaps = 5/135 (3%)

Query: 97  LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
            SK  L  EA + F+++K++G  PD+    +++  Y       +A  V   M   G  P+
Sbjct: 604 CSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVGKANEVLDYMKERGFTPS 663

Query: 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
             TY  L+   + +AD      G +++ L E++ KG++P+  +Y  V  A+ R  ++ +A
Sbjct: 664 MATYNSLMYMHSRSAD-----FGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDA 718

Query: 217 RGLLQQMKAKGFVPD 231
             +  +M+  G VPD
Sbjct: 719 SRIFSEMRDSGIVPD 733



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 76/154 (49%), Gaps = 8/154 (5%)

Query: 73  NLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           ++ +IF ++   GL+ + V    +     ++G+  E   +F ++K  G +P+      +I
Sbjct: 437 DMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLI 496

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
            AY+  G  ++A+ V+ RML +GV P+  TY  ++  LA        +   ++K L EM 
Sbjct: 497 SAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGG-----MWEQSEKVLAEME 551

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
               +PN  TY ++  A+   +++     L +++
Sbjct: 552 DGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEV 585



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 64/160 (40%), Gaps = 10/160 (6%)

Query: 77  IFHKMRTEGLTNNAVKMFDALSK----DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           IF +MR  G   N +  F+A  K     G   + +++F +I   G  PD+V    ++  +
Sbjct: 406 IFEEMRNAGCKPN-ICTFNAFIKMYGNRGKFVDMMKIFDEINVCGLSPDIVTWNTLLAVF 464

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G   E   VF  M  +G  P   T+  LI   +            A      M+  G
Sbjct: 465 GQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGS-----FEQAMTVYRRMLDAG 519

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           + P+  TY  V  A  R    +++  +L +M+     P+E
Sbjct: 520 VTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNE 559



 Score = 44.3 bits (103), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 29/158 (18%), Positives = 72/158 (45%), Gaps = 8/158 (5%)

Query: 78  FHKMRTEGLTNNAVKMFDALSKDG---LTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F +++  G + +   +   +S  G   +  +A ++   +K++G  P +  + +++  ++ 
Sbjct: 617 FSELKERGFSPDITTLNSMVSIYGRRQMVGKANEVLDYMKERGFTPSMATYNSLMYMHSR 676

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
           +    ++  +   +LA G+ P+  +Y  +I         N + + DA +   EM   G+ 
Sbjct: 677 SADFGKSEEILREILAKGIKPDIISYNTVIYAYCR----NTR-MRDASRIFSEMRDSGIV 731

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           P+  TY     ++      +EA G+++ M   G  P++
Sbjct: 732 PDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQ 769


>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
          Length = 667

 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 85/160 (53%), Gaps = 6/160 (3%)

Query: 72  RNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           R L+E+F +  +  +   +V + +AL K+G   EA +L+ ++  +G +P+ + + ++I+ 
Sbjct: 304 RLLREMFERKMSPDVVTFSV-LINALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDG 362

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           ++   +   A R+F  M   G +P+  T+++LI G        AK + D  K L EM  +
Sbjct: 363 FSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCG-----AKRVDDGMKLLHEMSRR 417

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G+  N  TYT +   F +   ++ A  LLQ+M + G  P+
Sbjct: 418 GLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPN 457



 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 73/139 (52%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L KDG   +A  LF+++++KG  P++  +  +I  + S+G+  EA R+   M    
Sbjct: 254 IIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLREMFERK 313

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           ++P+  T++VLI  L            +A++   EM+ +G+ PN  TY ++ + F +  +
Sbjct: 314 MSPDVVTFSVLINALVKEGK-----FFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQNR 368

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +D A  +   M  KG  PD
Sbjct: 369 LDAAERMFYLMATKGCSPD 387



 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 82/159 (51%), Gaps = 9/159 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM-PDVVAHTAVIEAY 132
           +  +M  +GL  N +    + D + K G T  AL L  ++++   + P+VV ++A+I+  
Sbjct: 199 LLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSRIKPNVVIYSAIIDGL 258

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+  +A  +F  M   G++PN +TY  +I G  ++   +     +AQ+ L EM  + 
Sbjct: 259 WKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGFCSSGRWS-----EAQRLLREMFERK 313

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           M P+  T++ +  A V+  K  EA  L  +M  +G +P+
Sbjct: 314 MSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPN 352



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 78/170 (45%), Gaps = 19/170 (11%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++ H+M   GL  N +    +     + G  + AL L  ++   G  P+VV    +++  
Sbjct: 409 KLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDGL 468

Query: 133 ASAGQGKEALRVFMRMLAS-----------GVAPNAYTYAVLIKGLAAAADGNAKILGDA 181
            + G+ K+AL +F  M  S            V P+  TY +LI GL      N     +A
Sbjct: 469 CNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLI-----NEGKFSEA 523

Query: 182 QKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           ++   EM  +G+ P+  TY +V +   +  ++DEA  +   M +KGF PD
Sbjct: 524 EELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPD 573



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 68/144 (47%), Gaps = 5/144 (3%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L  +G   EA +L+ ++  +G +PD + + +VI+      +  EA ++F  M + G +P
Sbjct: 513 GLINEGKFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSP 572

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  T+  LI G           +GD  +   EM  +G+  NA TY  +   F +   ++ 
Sbjct: 573 DVVTFTTLINGYCKVGR-----VGDGLEVFCEMGRRGIVANAITYRTLIHGFCQVGNING 627

Query: 216 ARGLLQQMKAKGFVPDEKAVKEAL 239
           A  + Q+M + G  PD   ++  L
Sbjct: 628 ALDIFQEMISSGVYPDTITIRNML 651



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 57/128 (44%), Gaps = 8/128 (6%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E++ +M   GL  + +    + D L K     EA Q+F  +  KG  PDVV  T +I  
Sbjct: 524 EELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLING 583

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y   G+  + L VF  M   G+  NA TY  LI G     + N      A     EM+  
Sbjct: 584 YCKVGRVGDGLEVFCEMGRRGIVANAITYRTLIHGFCQVGNING-----ALDIFQEMISS 638

Query: 192 GMRPNAGT 199
           G+ P+  T
Sbjct: 639 GVYPDTIT 646



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 68/170 (40%), Gaps = 35/170 (20%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L  +    EAL  F QI      P+V+A T ++      G+  EA+ +  RM+  G
Sbjct: 152 LLHGLCVEDRVSEALHFFHQICK----PNVIAFTTLMNGLCREGRVVEAVALLDRMVEDG 207

Query: 153 VAPNAYTYAVLIKGLAAAADG-----------------------NAKILG--------DA 181
           + PN  TY  ++ G+    D                        +A I G        DA
Sbjct: 208 LQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDA 267

Query: 182 QKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           Q    EM  KG+ PN  TY  +   F  + +  EA+ LL++M  +   PD
Sbjct: 268 QNLFSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPD 317


>gi|30840221|emb|CAD61285.1| fertility restorer [Raphanus sativus]
 gi|32452380|emb|CAD80165.1| restorer of fertility pentatricopeptide repeat [Raphanus sativus]
 gi|32527602|gb|AAP86198.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
 gi|90903522|gb|ABE02309.1| Rf [Raphanus sativus]
 gi|90903524|gb|ABE02310.1| Rf [Raphanus sativus]
 gi|157931524|gb|ABW04886.1| PPR [Raphanus sativus]
          Length = 687

 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 84/159 (52%), Gaps = 9/159 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM-PDVVAHTAVIEAY 132
           +  +M  +GL    +    + D + K G T  AL L  ++++  H+ P+VV ++A+I++ 
Sbjct: 206 LLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSL 265

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+  +A  +F  M   G+ P+ +TY  +I G  ++   +     DA++ L EM+ + 
Sbjct: 266 CKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWS-----DAEQLLQEMLERK 320

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + P+  TY A+  AFV+  K  EA  L  +M  +G +P+
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPN 359



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 76/139 (54%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D+L KDG   +A  LF ++++KG  PD+  + ++I  + S+G+  +A ++   ML   
Sbjct: 261 IIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERK 320

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           ++P+  TY  LI   A   +G      +A++   EM+ +G+ PN  TY+++ + F +  +
Sbjct: 321 ISPDVVTYNALIN--AFVKEGK---FFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNR 375

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +D A  +   M  KG  P+
Sbjct: 376 LDAAEHMFYLMATKGCSPN 394



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 8/159 (5%)

Query: 74  LQEIFH-KMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           LQE+   K+  + +T NA  + +A  K+G   EA +L+ ++  +G +P+ + ++++I+ +
Sbjct: 313 LQEMLERKISPDVVTYNA--LINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGF 370

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               +   A  +F  M   G +PN  T+  LI G   A     K + D  + L EM   G
Sbjct: 371 CKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGA-----KRIDDGMELLHEMTETG 425

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +  +  TY  +   F     ++ A  LLQ+M + G  PD
Sbjct: 426 LVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPD 464



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 68/153 (44%), Gaps = 8/153 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E++ +M   G+  + +    M D L K     EA Q+F  +  K   P+VV  T +I  
Sbjct: 531 EELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLING 590

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y  AG+  + L +F  M   G+  NA TY  LI G     + N      A     EM+  
Sbjct: 591 YCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNING-----ALDIFQEMISS 645

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           G+ P+  T   +       +++  A  +L++++
Sbjct: 646 GVYPDTITIRNMLTGLWSKEELKRAVAMLEKLQ 678



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 69/147 (46%), Gaps = 5/147 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L  +G   EA +L+ ++  +G +PD + ++++I+      +  EA ++F  M +  
Sbjct: 517 LISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKS 576

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            +PN  T+  LI G   A       + D  +   EM  +G+  NA TY  +   F +   
Sbjct: 577 FSPNVVTFTTLINGYCKAGR-----VDDGLELFCEMGRRGIVANAITYITLICGFRKVGN 631

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEAL 239
           ++ A  + Q+M + G  PD   ++  L
Sbjct: 632 INGALDIFQEMISSGVYPDTITIRNML 658



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 83/192 (43%), Gaps = 24/192 (12%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIK------DKGH-----MPD 121
           ++  +M + GL  + V    + D L  +G   +AL++F  ++      D  H      PD
Sbjct: 451 DLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPD 510

Query: 122 VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDA 181
           V  +  +I    + G+  EA  ++  M   G+ P+  TY+ +I GL   +      L +A
Sbjct: 511 VQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSR-----LDEA 565

Query: 182 QKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
            +    M  K   PN  T+T +   + +A +VD+   L  +M  +G V +       +  
Sbjct: 566 TQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIC- 624

Query: 242 KRGQGFRGVINI 253
               GFR V NI
Sbjct: 625 ----GFRKVGNI 632



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 7/157 (4%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F K+   GL  + V    +   L  +    EAL  F Q+ +    P+VV  T ++     
Sbjct: 137 FGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCR 196

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            G+  EA+ +  RM+  G+ P   TY  ++ G+    D     L   +K  ME V   + 
Sbjct: 197 EGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGD-TVSALNLLRK--MEEVSH-II 252

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           PN   Y+A+ ++  +  +  +A+ L  +M+ KG  PD
Sbjct: 253 PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPD 289



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 66/154 (42%), Gaps = 8/154 (5%)

Query: 88  NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMR 147
           N  +K F + SK      AL  F +I   G  PDVV  T ++       +  EAL  F +
Sbjct: 118 NILIKCFCSCSKLPF---ALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQ 174

Query: 148 MLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAF 207
           M  +   PN  T+  L+ GL        +I+ +A   L  M+  G++P   TY  + +  
Sbjct: 175 MFETTCRPNVVTFTTLMNGLCR----EGRIV-EAVALLDRMMEDGLQPTQITYGTIVDGM 229

Query: 208 VRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
            +      A  LL++M+    +     +  A+ID
Sbjct: 230 CKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIID 263



 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 44/195 (22%), Positives = 80/195 (41%), Gaps = 27/195 (13%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +F+ M T+G + N +    + D         + ++L  ++ + G + D   +  +I  
Sbjct: 380 EHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHG 439

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG- 190
           +   G    AL +   M++SG+ P+  T   L+ GL      N K L DA +    M   
Sbjct: 440 FYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLC----DNGK-LKDALEMFKVMQKS 494

Query: 191 ----------KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD--------E 232
                      G+ P+  TY  +    +   K  EA  L ++M  +G VPD        +
Sbjct: 495 KKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMID 554

Query: 233 KAVKEALIDKRGQGF 247
              K++ +D+  Q F
Sbjct: 555 GLCKQSRLDEATQMF 569


>gi|302820365|ref|XP_002991850.1| hypothetical protein SELMODRAFT_134282 [Selaginella moellendorffii]
 gi|300140388|gb|EFJ07112.1| hypothetical protein SELMODRAFT_134282 [Selaginella moellendorffii]
          Length = 425

 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 76/159 (47%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           EIF +M+  G+  N V    M D   K G    A Q   +++ +G  P+ +    +I   
Sbjct: 210 EIFERMKKSGVAVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARGIKPNSITFNTLINCL 269

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             A    EA +V   M ++G+ P+ +TY  +I+  A A  GN   +G A +   +M   G
Sbjct: 270 GRAKYASEAYKVLQEMRSAGLTPDVFTYTCMIEAFAKA--GN---MGKAFEMFGDMEKAG 324

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              N  TY  + +A V+A +  +AR +   MK KG +PD
Sbjct: 325 CSANVVTYNLLIDALVKAGRYQDARDIYFDMKKKGILPD 363



 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 94/205 (45%), Gaps = 25/205 (12%)

Query: 40  DQPTKKYVNTKSKLPPPYDPFKKVV----------DEEPTDPRNLQEIFHKMRTEGLTNN 89
           D+  K + + KS +  P D +   +          DEE T       +F +M   G T +
Sbjct: 101 DEACKLFASMKS-MGCPADDYTYAILIRSLGRCKRDEEAT------LLFDEMEERGCTPS 153

Query: 90  A---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFM 146
           A     + D   K G    A+ +  ++ DK   PD     ++I A +  G+ + A  +F 
Sbjct: 154 APAYTNVIDIYCKAGRIESAMVVLKKMLDKNLAPDDYTLNSLITAVSRTGRTELACEIFE 213

Query: 147 RMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEA 206
           RM  SGVA N  ++  ++        G A  +G A +++ EM  +G++PN+ T+  +   
Sbjct: 214 RMKKSGVAVNTVSFNAMLDCC-----GKAGKVGLAYQFMDEMEARGIKPNSITFNTLINC 268

Query: 207 FVRAQKVDEARGLLQQMKAKGFVPD 231
             RA+   EA  +LQ+M++ G  PD
Sbjct: 269 LGRAKYASEAYKVLQEMRSAGLTPD 293



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 68/135 (50%), Gaps = 5/135 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +  A+S+ G T  A ++F ++K  G   + V+  A+++    AG+   A +    M A G
Sbjct: 195 LITAVSRTGRTELACEIFERMKKSGVAVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARG 254

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN+ T+  LI  L     G AK   +A K L EM   G+ P+  TYT + EAF +A  
Sbjct: 255 IKPNSITFNTLINCL-----GRAKYASEAYKVLQEMRSAGLTPDVFTYTCMIEAFAKAGN 309

Query: 213 VDEARGLLQQMKAKG 227
           + +A  +   M+  G
Sbjct: 310 MGKAFEMFGDMEKAG 324



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 91/205 (44%), Gaps = 24/205 (11%)

Query: 35  LSSSSDQPTKKYVNTKSKLPPPY---DPFKKVVDEEPTDPRNLQEIFHKMRTEGLTNNAV 91
           L++  D P + +V   + +   Y       KV+DE           F ++   G   NA 
Sbjct: 2   LAAIQDTPCRYHVLVSNAVIAAYGRSSRIHKVMDE-----------FQELDKHGSKPNAY 50

Query: 92  K---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRM 148
               +  +L K G    A++L  ++   G  PD +    V++    A    EA ++F  M
Sbjct: 51  TYKCVIQSLVKAGNVVLAMELLDKMIKTGLEPDTLLCNVVLDGLGKANMMDEACKLFASM 110

Query: 149 LASGVAPNAYTYAVLIKGLA-AAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAF 207
            + G   + YTYA+LI+ L     D  A +L D      EM  +G  P+A  YT V + +
Sbjct: 111 KSMGCPADDYTYAILIRSLGRCKRDEEATLLFD------EMEERGCTPSAPAYTNVIDIY 164

Query: 208 VRAQKVDEARGLLQQMKAKGFVPDE 232
            +A +++ A  +L++M  K   PD+
Sbjct: 165 CKAGRIESAMVVLKKMLDKNLAPDD 189



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 8/131 (6%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +   +M   G+  N++    + + L +     EA ++  +++  G  PDV  +T +IEA+
Sbjct: 245 QFMDEMEARGIKPNSITFNTLINCLGRAKYASEAYKVLQEMRSAGLTPDVFTYTCMIEAF 304

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           A AG   +A  +F  M  +G + N  TY +LI  L  A         DA+    +M  KG
Sbjct: 305 AKAGNMGKAFEMFGDMEKAGCSANVVTYNLLIDALVKAGR-----YQDARDIYFDMKKKG 359

Query: 193 MRPNAGTYTAV 203
           + P+A T T +
Sbjct: 360 ILPDAITATVL 370



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 5/124 (4%)

Query: 109 LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
           + A I+D      V+   AVI AY  + +  + +  F  +   G  PNAYTY  +I+ L 
Sbjct: 1   MLAAIQDTPCRYHVLVSNAVIAAYGRSSRIHKVMDEFQELDKHGSKPNAYTYKCVIQSLV 60

Query: 169 AAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
            A  GN  +   A + L +M+  G+ P+      V +   +A  +DEA  L   MK+ G 
Sbjct: 61  KA--GNVVL---AMELLDKMIKTGLEPDTLLCNVVLDGLGKANMMDEACKLFASMKSMGC 115

Query: 229 VPDE 232
             D+
Sbjct: 116 PADD 119


>gi|302143622|emb|CBI22375.3| unnamed protein product [Vitis vinifera]
          Length = 407

 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 78/159 (49%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++ ++M+  G   + V    M  +L        AL++  Q+     MP V+ +T +IEA 
Sbjct: 158 QVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQLLLDNCMPTVITYTILIEAT 217

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G   EA+++   MLA G+ P+ YTY  +I+G+         +  + +K + EM  +G
Sbjct: 218 IVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEG-----MWDEGEKLVAEMFSRG 272

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             PN  TY+ +  +  R  ++DEA  +L+ M  K   PD
Sbjct: 273 CEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPD 311



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 59/112 (52%), Gaps = 5/112 (4%)

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
           PDV A+ AVI  +    + + A +V  RM A G  P+  TY ++I  L      N + LG
Sbjct: 135 PDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLC-----NRRKLG 189

Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            A K L +++     P   TYT + EA +    ++EA  LL++M A+G +PD
Sbjct: 190 LALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPD 241



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 66/127 (51%), Gaps = 5/127 (3%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A Q+  ++K +G +PD+V +  +I +  +  +   AL+V  ++L     P   TY +LI+
Sbjct: 156 ATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQLLLDNCMPTVITYTILIE 215

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
             A   +G    + +A K L EM+ +G+ P+  TY A+     +    DE   L+ +M +
Sbjct: 216 --ATIVEGG---INEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMWDEGEKLVAEMFS 270

Query: 226 KGFVPDE 232
           +G  P++
Sbjct: 271 RGCEPNK 277



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 72/162 (44%), Gaps = 12/162 (7%)

Query: 76  EIFHKMRTEGL-----TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           ++  +M   GL     T NA+     + K+G+  E  +L A++  +G  P+ V ++ +I 
Sbjct: 228 KLLEEMLARGLLPDMYTYNAI--IRGMCKEGMWDEGEKLVAEMFSRGCEPNKVTYSILIS 285

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
           +    G+  EA+ V   M+   + P+ Y+Y  LI  L    +G   +      Y   M+ 
Sbjct: 286 SLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISAL--CKEGRLDLAIGIMDY---MIS 340

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
            G  P+   Y  +  A  +    ++A  +  +++  G  P++
Sbjct: 341 NGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPND 382



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 6/99 (6%)

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             AG+  E+L     ++  G  P+      LIKG       N K +  A + +ME++   
Sbjct: 79  CKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFF-----NFKNIEKASR-VMEILESH 132

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             P+   Y AV   F +  +++ A  +L +MKA+GF+PD
Sbjct: 133 TEPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPD 171


>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
 gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
          Length = 597

 Score = 80.5 bits (197), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 83/193 (43%), Gaps = 43/193 (22%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKG---------------- 117
           +  KM   G   N V    + D+L +D L +EAL +F+ +K KG                
Sbjct: 220 LLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLC 279

Query: 118 -------------------HMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAY 158
                               MPD+V    +++ +   G+  EAL V   M   GV PN  
Sbjct: 280 KFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVV 339

Query: 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218
           TY+ L+ G +   D     + +A+K    M+ KG +PN  +Y  +   + +A+++DEA  
Sbjct: 340 TYSSLMYGYSLWTD-----VVEARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQ 394

Query: 219 LLQQMKAKGFVPD 231
           L  +M  +G  P+
Sbjct: 395 LFNEMIHQGLTPN 407



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 80/160 (50%), Gaps = 8/160 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F++M  +GLT N V    +     + G   EA  LF  +   G++PD+  ++ +++ +
Sbjct: 394 QLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGF 453

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G   +A R+F  M ++ + PN   Y +L+   A    GN K   DA+K   E+  +G
Sbjct: 454 CKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVH--AMCKSGNHK---DARKLFSELFVQG 508

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           ++P+   YT +     +   +DEA    + M+A G  PDE
Sbjct: 509 LQPHVQLYTTIINGLCKEGLLDEALEAFRNMEADGCPPDE 548



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 76/157 (48%), Gaps = 5/157 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   K+G   EAL +   + + G  P+VV +++++  Y+      EA ++F  M+  G
Sbjct: 309 LVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKG 368

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN ++Y +LI G        AK + +A +   EM+ +G+ PN  +Y  +   F +  K
Sbjct: 369 CKPNIFSYNILINGYC-----KAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGK 423

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRG 249
           + EA+ L + M   G +PD       L     QG+ G
Sbjct: 424 LREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLG 460



 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 88/193 (45%), Gaps = 16/193 (8%)

Query: 69  TDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAH 125
           TD    +++FH M T+G   N      + +   K     EA+QLF ++  +G  P+ V++
Sbjct: 352 TDVVEARKLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSY 411

Query: 126 TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185
             +I  +   G+ +EA  +F  M  +G  P+ +TY++L+ G           LG A +  
Sbjct: 412 NTLIHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQG-----YLGKAFRLF 466

Query: 186 MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK--------AVKE 237
             M    ++PN   YT +  A  ++    +AR L  ++  +G  P  +          KE
Sbjct: 467 RAMQSTYLKPNLVMYTILVHAMCKSGNHKDARKLFSELFVQGLQPHVQLYTTIINGLCKE 526

Query: 238 ALIDKRGQGFRGV 250
            L+D+  + FR +
Sbjct: 527 GLLDEALEAFRNM 539



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 78/161 (48%), Gaps = 12/161 (7%)

Query: 76  EIFHKMRTEGL-----TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           E+F  M  +G      T N +   + L K G T  A  L  ++++ G  P++V ++ +I+
Sbjct: 184 ELFDDMVAKGCQPDVYTYNTI--INGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLID 241

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
           +        EAL +F  M A G++P+ +TY  LI+GL   +        +A   L EM  
Sbjct: 242 SLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWK-----EASALLNEMTS 296

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             + P+  T+  + + F +  KV EA G+L+ M   G  P+
Sbjct: 297 LNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPN 337



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 65/139 (46%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K G   +A++LF  +  KG  PDV  +  +I      G+   A  +  +M  +G
Sbjct: 169 LINGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAG 228

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN  TY+ LI  L        +++ +A      M  KG+ P+  TYT++ +   +  +
Sbjct: 229 CQPNMVTYSTLIDSLC-----RDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSR 283

Query: 213 VDEARGLLQQMKAKGFVPD 231
             EA  LL +M +   +PD
Sbjct: 284 WKEASALLNEMTSLNIMPD 302



 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 77/166 (46%), Gaps = 14/166 (8%)

Query: 72  RNLQEIFHKMRTEG----LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           R  Q++F  M T G    L   ++ + D   K G   +A +LF  ++     P++V +T 
Sbjct: 425 REAQDLFRNMCTNGNLPDLFTYSI-LLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTI 483

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           ++ A   +G  K+A ++F  +   G+ P+   Y  +I GL         +L +A +    
Sbjct: 484 LVHAMCKSGNHKDARKLFSELFVQGLQPHVQLYTTIINGLCKEG-----LLDEALEAFRN 538

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ--QMKAKGFVPD 231
           M   G  P+  +Y  +    +  Q  DE+R LL   +M+ +GF+ D
Sbjct: 539 MEADGCPPDEISYNVIIRGLL--QHKDESRALLLVGEMRDRGFIAD 582


>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 93/205 (45%), Gaps = 31/205 (15%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F +M   GL  N V    +   L + G    A ++F ++   G  PD++ ++ +++  
Sbjct: 417 ELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGL 476

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+ ++AL VF  +  S + PN YTY ++I+G+  A       + D       +  KG
Sbjct: 477 CKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGK-----VEDGWDLFCSLSLKG 531

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD---------------EKAVKE 237
           ++PN   YT +   F R    +EA  L ++MK  G +PD               +KA   
Sbjct: 532 VKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKAASA 591

Query: 238 ALI-DKRGQGFRG-------VINIL 254
            LI + R  GF G       VIN+L
Sbjct: 592 ELIKEMRSCGFVGDASTISMVINML 616



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 67/139 (48%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K     +A  LF +++ KG  PDV  + ++I    + G+  +A R+   M+   
Sbjct: 262 IIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERK 321

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN  T+  LI   A         L +A+K   EM+ + + PN  TY ++   F    +
Sbjct: 322 INPNVVTFNSLIDAFAKEGK-----LIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDR 376

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +DEA+ +   M +K  +PD
Sbjct: 377 LDEAQQIFTLMVSKDCLPD 395



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 89/186 (47%), Gaps = 12/186 (6%)

Query: 52  KLPPPYDPFKKVVDEEPTDPRNLQ--EIFHKMRTEGLTNNAVKMFDALSKDGLTH----E 105
           K+ P    F  ++D    + + ++  ++F +M    +  N V  +++L      H    E
Sbjct: 321 KINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVT-YNSLINGFCMHDRLDE 379

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A Q+F  +  K  +PDVV +  +I+ +  A + +E + +F  M   G+  N  TY  LI+
Sbjct: 380 AQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQ 439

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           GL  A D +      AQK   +MV  G+ P+  TY+ + +   +  K+++A  + + ++ 
Sbjct: 440 GLFQAGDCDM-----AQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQK 494

Query: 226 KGFVPD 231
               P+
Sbjct: 495 SKMEPN 500



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 8/164 (4%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           Q+IF KM ++G+  + +    + D L K G   +AL +F  ++     P++  +  +IE 
Sbjct: 451 QKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEG 510

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              AG+ ++   +F  +   GV PN   Y  +I G          +  +A     EM   
Sbjct: 511 MCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKG-----LKEEADALFREMKED 565

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAV 235
           G  P++G Y  +  A +R      +  L+++M++ GFV D   +
Sbjct: 566 GTLPDSGCYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTI 609



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 5/127 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA+ L  Q+ + G+ PD V    +I       +  EA+ +  RM+A G  P+ +TY  ++
Sbjct: 169 EAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVV 228

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            GL    D +      A   L +M    +  N   Y  + +   + + +D+A  L  +M+
Sbjct: 229 NGLCKRGDIDL-----ALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKME 283

Query: 225 AKGFVPD 231
            KG  PD
Sbjct: 284 TKGIKPD 290



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 66/141 (46%), Gaps = 9/141 (6%)

Query: 95  DALSKDGLTH----EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           + LS++GL+     +A+ LF ++      P ++  + ++ A A   +    + +  +M  
Sbjct: 50  EKLSRNGLSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQN 109

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
            G+  N YTY++L+      +      L  A   L +M+  G  P+  T +++   +   
Sbjct: 110 LGIPHNHYTYSILLNCFCRRSQ-----LPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHG 164

Query: 211 QKVDEARGLLQQMKAKGFVPD 231
           +++ EA  L+ QM   G+ PD
Sbjct: 165 KRISEAVALVDQMVEMGYKPD 185



 Score = 45.4 bits (106), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 32/140 (22%), Positives = 62/140 (44%), Gaps = 5/140 (3%)

Query: 92  KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
           K+  A++K       + L  Q+++ G   +   ++ ++  +    Q   AL V  +M+  
Sbjct: 86  KLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILLNCFCRRSQLPLALAVLGKMMKL 145

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           G  P+  T + L+ G       + K + +A   + +MV  G +P+  T+  +        
Sbjct: 146 GYEPDIVTLSSLLNGYC-----HGKRISEAVALVDQMVEMGYKPDTVTFNTLIHGLFLHN 200

Query: 212 KVDEARGLLQQMKAKGFVPD 231
           K  EA  L+ +M A+G  PD
Sbjct: 201 KASEAVALIDRMVARGCQPD 220


>gi|53793262|dbj|BAD54485.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 713

 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 85/179 (47%), Gaps = 16/179 (8%)

Query: 78  FHKMRTEGLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F  M+ EG+  N V      DA  K+GL  EA++LFAQ++ +G   +   +T +I+    
Sbjct: 281 FAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCK 340

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
           AG+  +A+ +   M+  GV  N  TY VL+ GL        + + +A+  L  M   G+R
Sbjct: 341 AGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLC-----KERKVAEAEDVLRMMEKAGVR 395

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINI 253
            N   YT +       +  ++A GLL +MK KG   D        I   G   +G+ N+
Sbjct: 396 ANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELD--------ISLYGALIQGLCNV 446



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 81/162 (50%), Gaps = 8/162 (4%)

Query: 74  LQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           ++++  +MR  G   + V    + +   K G    A   FA +K +G M +VV  +  ++
Sbjct: 242 VEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVD 301

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
           A+   G  +EA+++F +M   G+A N +TY  LI G   A       L DA   L EMV 
Sbjct: 302 AFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGR-----LDDAIVLLDEMVR 356

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           +G+  N  TYT + +   + +KV EA  +L+ M+  G   +E
Sbjct: 357 QGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANE 398



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 76/150 (50%), Gaps = 8/150 (5%)

Query: 78  FHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F+KMR  GL  N      + D L K+G  +EA+QLF ++  KG   D V +TA+++ Y  
Sbjct: 526 FNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLK 585

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            G   +A  +  +M+ SG+  + + Y   I G       N  ++ +A++   EM+G G+ 
Sbjct: 586 QGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFC-----NLNMMPEAREVFSEMIGHGIA 640

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           P+   Y  +   + +   ++EA  L  +M+
Sbjct: 641 PDRAVYNCLISKYQKLGNLEEAISLQDEME 670



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 74/160 (46%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +  KM   GL  N +    M DA  K G   EA+ +  +I D G  P+V+ + A+I+ 
Sbjct: 453 KSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDG 512

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              AG   EA+  F +M   G+ PN   Y  L+ GL          L +A +   EMV K
Sbjct: 513 LCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNG-----CLNEAVQLFNEMVHK 567

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           GM  +   YTA+ + +++   + +A  L  +M   G   D
Sbjct: 568 GMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLD 607



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 86/170 (50%), Gaps = 13/170 (7%)

Query: 77  IFHKMRTEGLTNNAVKMFDALSKDGLTH-----EALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +  +M+ +GL  + + ++ AL + GL +     EA  L  ++ + G  P+ + +T +++A
Sbjct: 420 LLSEMKNKGLELD-ISLYGALIQ-GLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDA 477

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              +G+  EA+ +  ++L SG  PN  TY  LI GL  A       + +A  +  +M   
Sbjct: 478 CFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGS-----IDEAISHFNKMRDL 532

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           G+ PN   YTA+ +   +   ++EA  L  +M  KG   D K V  AL+D
Sbjct: 533 GLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLD-KVVYTALLD 581



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 5/140 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K+G   EA  LF+++K+ G +PDVV   ++I+ Y   G+  E  ++   M  SG
Sbjct: 194 VIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSG 253

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
              +  TY  LI             +  A  Y   M  +G+  N  T++   +AF +   
Sbjct: 254 CKADVVTYNALINCFCKFGR-----METAYGYFAAMKREGVMANVVTFSTFVDAFCKEGL 308

Query: 213 VDEARGLLQQMKAKGFVPDE 232
           V EA  L  QM+ +G   +E
Sbjct: 309 VREAMKLFAQMRVRGMALNE 328



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 75/150 (50%), Gaps = 8/150 (5%)

Query: 103 THEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAV 162
           + +AL L +++K+KG   D+  + A+I+   +  +  EA  +  +M  SG+ PN   Y  
Sbjct: 414 SEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTT 473

Query: 163 LIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
           ++     A   + K+  +A   L +++  G +PN  TY A+ +   +A  +DEA     +
Sbjct: 474 MMD----ACFKSGKV-PEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNK 528

Query: 223 MKAKGFVPDEKAVKEALIDKRGQGFRGVIN 252
           M+  G  P+ +A   AL+D  G    G +N
Sbjct: 529 MRDLGLDPNVQAYT-ALVD--GLCKNGCLN 555


>gi|302809589|ref|XP_002986487.1| hypothetical protein SELMODRAFT_182414 [Selaginella moellendorffii]
 gi|300145670|gb|EFJ12344.1| hypothetical protein SELMODRAFT_182414 [Selaginella moellendorffii]
          Length = 773

 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 84/171 (49%), Gaps = 8/171 (4%)

Query: 86  LTNNAVKMFDALSKDGLTHEAL-QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRV 144
           +T N V   +A SK GL  E L  LFAQ++ +G  PD++ +  ++ A +S G  ++A  V
Sbjct: 153 ITYNTV--LNACSKGGLDWEGLLNLFAQMRHEGIQPDLITYNTLLSACSSRGLVEQAAMV 210

Query: 145 FMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVF 204
           F  M  SGV  +A TY  L+   A +       LG  ++ L EM  +G  P+   Y ++ 
Sbjct: 211 FKTMNESGVVADAVTYKSLVDTFAGSNQ-----LGRVEELLREMEDEGNSPDIAGYNSLI 265

Query: 205 EAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILF 255
           EA+  A  V  A G+ +QM+  G  PD +     L     QG    +  LF
Sbjct: 266 EAYADAGNVHGAAGVFKQMQRGGCAPDVETYSTLLRIYGNQGCFEQVRSLF 316



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 9/173 (5%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F  M   G+  +AV    + D  +         +L  +++D+G+ PD+  + ++IEAYA
Sbjct: 210 VFKTMNESGVVADAVTYKSLVDTFAGSNQLGRVEELLREMEDEGNSPDIAGYNSLIEAYA 269

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG    A  VF +M   G AP+  TY+ L++       GN       +    +M     
Sbjct: 270 DAGNVHGAAGVFKQMQRGGCAPDVETYSTLLR-----IYGNQGCFEQVRSLFSDMKELST 324

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
            P   TY ++ + F       E+  L   M   G  PD+ A   AL+   G+G
Sbjct: 325 PPTVATYNSLIQVFGEGGYFQESINLFHDMVDSGVKPDD-ATYSALLSVCGRG 376



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 67/149 (44%), Gaps = 5/149 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M   + ++GL  +  ++F  + +     +V A TA+I AY   GQ + +L +  RM    
Sbjct: 88  MIGIMGREGLLEKCSEIFEDMPENDVKWNVYAFTALINAYGRNGQYEASLHLLARMKKER 147

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V PN  TY  +   L A + G     G       +M  +G++P+  TY  +  A      
Sbjct: 148 VEPNLITYNTV---LNACSKGGLDWEG-LLNLFAQMRHEGIQPDLITYNTLLSACSSRGL 203

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALID 241
           V++A  + + M   G V D    K +L+D
Sbjct: 204 VEQAAMVFKTMNESGVVADAVTYK-SLVD 231



 Score = 45.4 bits (106), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 66/161 (40%), Gaps = 9/161 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +FH M   G+  +      +     + GLT EA ++   +      P + A   +I +Y 
Sbjct: 350 LFHDMVDSGVKPDDATYSALLSVCGRGGLTREAAKIHQHMLTNESTPSLEASAGLISSYG 409

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
                K+AL  + R+  +G+ P    Y  LI+G A        +  +A   L  M   G 
Sbjct: 410 KMAMYKDALVSYYRIREAGLDPQVSAYDALIQGYAKGG-----LYVEAGSTLYAMNKAGF 464

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK-GFVPDEK 233
           +    +  +V EA+ +    DEA     +++ K G   DE+
Sbjct: 465 QAPVSSVNSVMEAYSKVGLHDEALEFFSELQQKEGSEVDER 505



 Score = 43.9 bits (102), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 59/141 (41%), Gaps = 8/141 (5%)

Query: 88  NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMR 147
           N+ +++F    + G   E++ LF  + D G  PD   ++A++      G  +EA ++   
Sbjct: 332 NSLIQVF---GEGGYFQESINLFHDMVDSGVKPDDATYSALLSVCGRGGLTREAAKIHQH 388

Query: 148 MLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAF 207
           ML +   P+    A LI     ++ G   +  DA      +   G+ P    Y A+ + +
Sbjct: 389 MLTNESTPSLEASAGLI-----SSYGKMAMYKDALVSYYRIREAGLDPQVSAYDALIQGY 443

Query: 208 VRAQKVDEARGLLQQMKAKGF 228
            +     EA   L  M   GF
Sbjct: 444 AKGGLYVEAGSTLYAMNKAGF 464


>gi|222622462|gb|EEE56594.1| hypothetical protein OsJ_05954 [Oryza sativa Japonica Group]
          Length = 579

 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 76/161 (47%), Gaps = 8/161 (4%)

Query: 74  LQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           +  +F KM+T G+  +      M  +  + GL  +A +LF  ++     PDVV + ++I 
Sbjct: 389 ISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLIN 448

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
                G   EA  +F  M   G  P+ +TY++LI+       G +  +  A     EM+ 
Sbjct: 449 CLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECF-----GKSNKVEMACSLFDEMIS 503

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +G  PN  TY  + +   R  K +EA  L + MK +G +PD
Sbjct: 504 EGCTPNIVTYNILLDCLERRGKTEEAHKLYETMKQQGLIPD 544



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 93/219 (42%), Gaps = 13/219 (5%)

Query: 21  RITNTRVNATLQRSLSSSSDQPTKKYVNTK---SKLPPPYDPFKKVVDEEPTDPRNLQ-- 75
           R  N  + + L +SL  S        V  +   S      D F  +++      + L+  
Sbjct: 296 RFMNRSIYSYLVKSLCKSGHASEAHNVFCRMWNSHEKGDRDAFVSMLEVLCNAEKTLEAI 355

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++ H M  +G+  +      +F AL K         LF ++K  G +PDV  +  +I +Y
Sbjct: 356 DLLHMMPEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSY 415

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G   +A  +F  M AS   P+  TY  LI  L    D     L +A     EM  KG
Sbjct: 416 GRVGLVDKASELFEVMEASSCKPDVVTYNSLINCLGKHGD-----LDEAHMLFKEMQEKG 470

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             P+  TY+ + E F ++ KV+ A  L  +M ++G  P+
Sbjct: 471 YDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPN 509



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 74/152 (48%), Gaps = 7/152 (4%)

Query: 81  MRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140
           +R  G T   +      S++    +  Q++ +++ KG+  D+ A+  +++A A AG   +
Sbjct: 124 LRLSGYTYKCIVQAHLRSRE--VSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQ 181

Query: 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTY 200
           A +VF  M      P+AYTY +LI+ ++  A   +K L     +  EMV KG   N   +
Sbjct: 182 AFQVFEDMKQKHCVPDAYTYTILIR-MSGKAGRTSKFLS----FFDEMVSKGCVLNLIAF 236

Query: 201 TAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
             + EA  + + VD+   +L +M      P++
Sbjct: 237 NTIIEALGKNKMVDKVIFVLSKMVENDCQPNQ 268



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 8/145 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F  M       + V    + + L K G   EA  LF ++++KG+ PDV  ++ +IE +
Sbjct: 426 ELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECF 485

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             + + + A  +F  M++ G  PN  TY +L+  L            +A K    M  +G
Sbjct: 486 GKSNKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTE-----EAHKLYETMKQQG 540

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEAR 217
           + P++ TY+ +     R+Q+    R
Sbjct: 541 LIPDSITYSILERLESRSQRTVRIR 565



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 63/133 (47%), Gaps = 8/133 (6%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +++ +MR +G   +      + DAL+K G+  +A Q+F  +K K  +PD   +T +I   
Sbjct: 149 QVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFEDMKQKHCVPDAYTYTILIRMS 208

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             AG+  + L  F  M++ G   N   +  +I+ L     G  K++      L +MV   
Sbjct: 209 GKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEAL-----GKNKMVDKVIFVLSKMVEND 263

Query: 193 MRPNAGTYTAVFE 205
            +PN  TY+   +
Sbjct: 264 CQPNQFTYSITLD 276


>gi|293332227|ref|NP_001169164.1| uncharacterized protein LOC100383014 [Zea mays]
 gi|223975267|gb|ACN31821.1| unknown [Zea mays]
          Length = 469

 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 82/174 (47%), Gaps = 11/174 (6%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E    M+  G + N V    + +   K G  H+A      + + G MPDV+  T++I+  
Sbjct: 241 ETIKVMQESGFSPNLVTFNTLINGYLKLGNVHDAKAFLKMVMEHGLMPDVITFTSLIDGL 300

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               Q  +A   F  M   GV PN  TY VLI GL +A       +  A + L +M   G
Sbjct: 301 CHTHQLDDAFNCFSEMSEWGVRPNVQTYNVLIHGLCSAGH-----VSKAIELLNKMKMDG 355

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE---KAVKEALIDKR 243
           + P+A ++ A   +F R +K+++A+ L   M   G  PD     A+ +AL D+R
Sbjct: 356 ITPDAYSFNAPILSFCRMRKIEKAQKLFNDMSRYGVSPDSYTYNALIKALCDER 409



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 63/127 (49%), Gaps = 5/127 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +A + F+Q+   G +  V ++  VI+ +A AG+ + AL     M  SG +PN  T+  LI
Sbjct: 203 KANKYFSQMVSDGLLSSVESYNIVIDCFAKAGEVERALETIKVMQESGFSPNLVTFNTLI 262

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            G      GN     DA+ +L  ++  G+ P+  T+T++ +      ++D+A     +M 
Sbjct: 263 NGYLKL--GNVH---DAKAFLKMVMEHGLMPDVITFTSLIDGLCHTHQLDDAFNCFSEMS 317

Query: 225 AKGFVPD 231
             G  P+
Sbjct: 318 EWGVRPN 324



 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 2/85 (2%)

Query: 82  RTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEA 141
           R +  T N   +   + + G+  EAL+L  Q++  G  P+VV +T +++ + +A + +EA
Sbjct: 7   RPDCFTYNT--LVHGVCRRGIVDEALRLVKQMERAGIRPNVVTYTMLVDGFCNASRVEEA 64

Query: 142 LRVFMRMLASGVAPNAYTYAVLIKG 166
           + V  RM   GV+    TY  L+ G
Sbjct: 65  VCVLERMKEKGVSATEATYRSLVHG 89



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/136 (22%), Positives = 59/136 (43%), Gaps = 5/136 (3%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            LSK+ +  EA++L  ++  +G++      + VI       +  +   +    +  G   
Sbjct: 124 CLSKNDMDKEAVELAKKMSKRGYLLGSTTFSIVIPCAVKVLESSDLCELVDDFIKKGGNL 183

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
               Y ++IK      D     +  A KY  +MV  G+  +  +Y  V + F +A +V+ 
Sbjct: 184 GFDMYIMIIKSFLRCKD-----ISKANKYFSQMVSDGLLSSVESYNIVIDCFAKAGEVER 238

Query: 216 ARGLLQQMKAKGFVPD 231
           A   ++ M+  GF P+
Sbjct: 239 ALETIKVMQESGFSPN 254



 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 5/106 (4%)

Query: 117 GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK 176
           G  PD   +  ++      G   EALR+  +M  +G+ PN  TY +L+ G       NA 
Sbjct: 5   GCRPDCFTYNTLVHGVCRRGIVDEALRLVKQMERAGIRPNVVTYTMLVDGFC-----NAS 59

Query: 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
            + +A   L  M  KG+     TY ++     R  + + A  +L +
Sbjct: 60  RVEEAVCVLERMKEKGVSATEATYRSLVHGAFRCLEKERAYRMLSE 105


>gi|218190347|gb|EEC72774.1| hypothetical protein OsI_06434 [Oryza sativa Indica Group]
          Length = 579

 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 76/161 (47%), Gaps = 8/161 (4%)

Query: 74  LQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           +  +F KM+T G+  +      M  +  + GL  +A +LF  ++     PDVV + ++I 
Sbjct: 389 ISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASSCKPDVVTYNSLIN 448

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
                G   EA  +F  M   G  P+ +TY++LI+       G +  +  A     EM+ 
Sbjct: 449 CLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECF-----GKSNKVEMACSLFDEMIS 503

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +G  PN  TY  + +   R  K +EA  L + MK +G +PD
Sbjct: 504 EGCTPNIVTYNILLDCLERRGKTEEAHKLYETMKQQGLIPD 544



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 93/219 (42%), Gaps = 13/219 (5%)

Query: 21  RITNTRVNATLQRSLSSSSDQPTKKYVNTK---SKLPPPYDPFKKVVDEEPTDPRNLQ-- 75
           R  N  + + L +SL  S        V  +   S      D F  +++      + L+  
Sbjct: 296 RFMNRSIYSYLVKSLCKSGHASEAHNVFCRMWNSHEKGDRDAFVSMLEVLCNAEKTLEAI 355

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++ H M  +G+  +      +F AL K         LF ++K  G +PDV  +  +I +Y
Sbjct: 356 DLLHMMPEKGIVTDVGMYNMVFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSY 415

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G   +A  +F  M AS   P+  TY  LI  L    D     L +A     EM  KG
Sbjct: 416 GRVGLVDKASELFEVMEASSCKPDVVTYNSLINCLGKHGD-----LDEAHMLFKEMQEKG 470

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             P+  TY+ + E F ++ KV+ A  L  +M ++G  P+
Sbjct: 471 YDPDVFTYSILIECFGKSNKVEMACSLFDEMISEGCTPN 509



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 74/152 (48%), Gaps = 7/152 (4%)

Query: 81  MRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140
           +R  G T   +      S++    +  Q++ +++ KG+  D+ A+  +++A A AG   +
Sbjct: 124 LRLSGYTYKCIVQAHLRSRE--VSKGFQVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQ 181

Query: 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTY 200
           A +VF  M      P+AYTY +LI+ ++  A   +K L     +  EMV KG   N   +
Sbjct: 182 AFQVFEDMKQKHCVPDAYTYTILIR-MSGKAGRTSKFLS----FFDEMVSKGCVLNLIAF 236

Query: 201 TAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
             + EA  + + VD+   +L +M      P++
Sbjct: 237 NTIIEALGKNKMVDKVIFVLSKMVENDCQPNQ 268



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 68/145 (46%), Gaps = 8/145 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F  M       + V    + + L K G   EA  LF ++++KG+ PDV  ++ +IE +
Sbjct: 426 ELFEVMEASSCKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECF 485

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             + + + A  +F  M++ G  PN  TY +L+  L            +A K    M  +G
Sbjct: 486 GKSNKVEMACSLFDEMISEGCTPNIVTYNILLDCLERRGKTE-----EAHKLYETMKQQG 540

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEAR 217
           + P++ TY+ +     R+Q+    R
Sbjct: 541 LIPDSITYSILERLESRSQRTVRIR 565



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 63/133 (47%), Gaps = 8/133 (6%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +++ +MR +G   +      + DAL+K G+  +A Q+F  +K K  +PD   +T +I   
Sbjct: 149 QVYEEMRRKGYKLDIFAYNMLLDALAKAGMVDQAFQVFEDMKQKHCVPDAYTYTILIRMS 208

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             AG+  + L  F  M++ G   N   +  +I+ L     G  K++      L +MV   
Sbjct: 209 GKAGRTSKFLSFFDEMVSKGCVLNLIAFNTIIEAL-----GKNKMVDKVIFVLSKMVEND 263

Query: 193 MRPNAGTYTAVFE 205
            +PN  TY+   +
Sbjct: 264 CQPNQFTYSITLD 276


>gi|413934354|gb|AFW68905.1| hypothetical protein ZEAMMB73_510949 [Zea mays]
          Length = 845

 Score = 80.5 bits (197), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 42/137 (30%), Positives = 73/137 (53%), Gaps = 5/137 (3%)

Query: 95  DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           + L +    +EA Q FA++  +G +P+ + + ++I A   AG   EAL++   M  SG+ 
Sbjct: 537 NGLCRLDCVNEAYQAFAEMTSRGIVPNNITYNSIISALCKAGNMTEALKLVQNMRQSGLV 596

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
           P+ YT  +LI GL    +G  K++ +    L++M   G+ P+  TY  +  A+ RAQ ++
Sbjct: 597 PDIYTSNILIDGL--CREGKLKMVDN---LLLDMCSNGLTPDTVTYNTIINAYCRAQDMN 651

Query: 215 EARGLLQQMKAKGFVPD 231
            A   + +M   G  PD
Sbjct: 652 SAMNFMNKMLVAGCEPD 668



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 76/165 (46%), Gaps = 12/165 (7%)

Query: 72  RNLQEIFHKMRTEG-----LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           R    +F +M  EG      T NA  M       G+   A  L   +   G  PDV ++ 
Sbjct: 200 RAAWNVFEEMTAEGPRPSLATFNA--MLLGFCHRGMVRVASGLLGIMGKSGIAPDVCSYN 257

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
            +I+ +   G  ++A ++F  M  SG  P   TY +L+  L          + +A++   
Sbjct: 258 ILIKGHCVFGWSRDAFKMFEGMHRSGCEPTVVTYNILVDVLCHEGR-----MPEARRLFD 312

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           EM   G++ N  T+  + + + ++ ++D+A    ++M+A+G VPD
Sbjct: 313 EMAQVGIQVNTITFNVLIDGYAKSGQMDQASAAYREMQARGLVPD 357



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/159 (24%), Positives = 73/159 (45%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           + F +M + G+  N +    +  AL K G   EAL+L   ++  G +PD+     +I+  
Sbjct: 550 QAFAEMTSRGIVPNNITYNSIISALCKAGNMTEALKLVQNMRQSGLVPDIYTSNILIDGL 609

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+ K    + + M ++G+ P+  TY  +I     A D N+     A  ++ +M+  G
Sbjct: 610 CREGKLKMVDNLLLDMCSNGLTPDTVTYNTIINAYCRAQDMNS-----AMNFMNKMLVAG 664

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             P+  TY     +  R   +++A  LL ++ A    P+
Sbjct: 665 CEPDIFTYNIWMHSLCRNHMLNQAGKLLDELVAVDCSPN 703



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/175 (24%), Positives = 71/175 (40%), Gaps = 9/175 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++   MR  GL  +      + D L ++G       L   +   G  PD V +  +I AY
Sbjct: 585 KLVQNMRQSGLVPDIYTSNILIDGLCREGKLKMVDNLLLDMCSNGLTPDTVTYNTIINAY 644

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             A     A+    +ML +G  P+ +TY + +  L         +L  A K L E+V   
Sbjct: 645 CRAQDMNSAMNFMNKMLVAGCEPDIFTYNIWMHSLC-----RNHMLNQAGKLLDELVAVD 699

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGF 247
             PN+ TY  + +  + +  +D A  L  ++    F P+   +   L     QGF
Sbjct: 700 CSPNSVTYNTLMDG-ICSDVLDRAMILTGRLIKMAFKPNTITLNVFLSHFCKQGF 753



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/159 (25%), Positives = 68/159 (42%), Gaps = 9/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E++  M   GL  ++     +   L   G   EA  L   +  KG+     + T  ++AY
Sbjct: 446 ELYRIMNKLGLAPSSSTFNYLIMGLCNQGRLDEAQLLLEHMVSKGYCLST-SFTICLDAY 504

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G    AL+ +  M   G+  +   ++  I GL          + +A +   EM  +G
Sbjct: 505 FRDGNAVGALKCWDDMGNIGLQTDFIAFSAYINGLC-----RLDCVNEAYQAFAEMTSRG 559

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + PN  TY ++  A  +A  + EA  L+Q M+  G VPD
Sbjct: 560 IVPNNITYNSIISALCKAGNMTEALKLVQNMRQSGLVPD 598



 Score = 48.1 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 8/121 (6%)

Query: 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
           G + +A ++F  +   G  P VV +  +++     G+  EA R+F  M   G+  N  T+
Sbjct: 267 GWSRDAFKMFEGMHRSGCEPTVVTYNILVDVLCHEGRMPEARRLFDEMAQVGIQVNTITF 326

Query: 161 AVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
            VLI G A +       +  A     EM  +G+ P++ T+  +     RA K   A  L+
Sbjct: 327 NVLIDGYAKSGQ-----MDQASAAYREMQARGLVPDSCTFNII---AARAHKFGYAAQLV 378

Query: 221 Q 221
            
Sbjct: 379 H 379



 Score = 46.2 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 45/205 (21%), Positives = 81/205 (39%), Gaps = 30/205 (14%)

Query: 72  RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R+  ++F  M   G     V    + D L  +G   EA +LF ++   G   + +    +
Sbjct: 270 RDAFKMFEGMHRSGCEPTVVTYNILVDVLCHEGRMPEARRLFDEMAQVGIQVNTITFNVL 329

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK-----GLAA-------------A 170
           I+ YA +GQ  +A   +  M A G+ P++ T+ ++       G AA             +
Sbjct: 330 IDGYAKSGQMDQASAAYREMQARGLVPDSCTFNIIAARAHKFGYAAQLVHDHDMFSSHMS 389

Query: 171 ADGNAKI---------LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221
           ADG   +         L DA + L+  + +G+      + A+  A+ +    +EA  L +
Sbjct: 390 ADGLDMLVCRLCWDHRLDDAWELLLGAIEQGVPLRVTGFNALIAAYSKEGLHEEASELYR 449

Query: 222 QMKAKGFVPDEKAVKEALIDKRGQG 246
            M   G  P        ++    QG
Sbjct: 450 IMNKLGLAPSSSTFNYLIMGLCNQG 474



 Score = 42.4 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 5/103 (4%)

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           + A+ +AG   EAL V  R+  SG  P+    + L++ L  + +  A     A     EM
Sbjct: 155 LHAFLAAGMAAEALDVLARVRRSGNTPSLSALSALLRLLFRSGEVRA-----AWNVFEEM 209

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             +G RP+  T+ A+   F     V  A GLL  M   G  PD
Sbjct: 210 TAEGPRPSLATFNAMLLGFCHRGMVRVASGLLGIMGKSGIAPD 252


>gi|356513139|ref|XP_003525271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g21222-like [Glycine max]
          Length = 621

 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 83/168 (49%), Gaps = 15/168 (8%)

Query: 71  PRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P   Q +FH +  EG     +    +  AL++         L +++ D G  PD +   A
Sbjct: 76  PHEAQAVFHNLTEEGHKPTLITYTTLVAALTRQKRFKSIPALLSKVADNGMKPDSILLNA 135

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKY--L 185
           +I A++ +G+  EA+++F +M   G  P   TY  LIKG          I+G   +   L
Sbjct: 136 MINAFSDSGKVDEAMKIFQKMKEYGCKPTTSTYNTLIKGFG--------IVGRPYESMKL 187

Query: 186 MEMVGK--GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +EM+G+   ++PN  TY  + +A+   +K++EA  +L +M A G  PD
Sbjct: 188 LEMMGQDENVKPNDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPD 235



 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 78/182 (42%), Gaps = 11/182 (6%)

Query: 56  PYDPFKKVVDEEPTDPRNLQE---IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQL 109
           P D    ++ +     + L+E   + HKM   G+  + V    M  A +++G T +A +L
Sbjct: 199 PNDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMARAYAQNGETEKAERL 258

Query: 110 FAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169
             +++     P+      +I  Y   G   EALR   RM   GV PN   +  LIKG   
Sbjct: 259 ILKMQYNKVKPNERTCGIIISGYCKEGNMTEALRFLYRMKELGVHPNPVVFNSLIKGYLD 318

Query: 170 AADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFV 229
           A D N     D    LME    G++P+  T++ +  A+  A  +D    +   M   G  
Sbjct: 319 ATDTNGV---DEALTLMEEF--GIKPDVVTFSTIMNAWSSAGLMDNCEEIFNDMVKAGIE 373

Query: 230 PD 231
           PD
Sbjct: 374 PD 375



 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 81/176 (46%), Gaps = 17/176 (9%)

Query: 78  FHKMRTEGLTNNAVKMFDALSKDGL-------THEALQLFAQIKDKGHMPDVVAHTAVIE 130
            ++M+  G+  N V +F++L K  L         EAL L  +    G  PDVV  + ++ 
Sbjct: 294 LYRMKELGVHPNPV-VFNSLIKGYLDATDTNGVDEALTLMEEF---GIKPDVVTFSTIMN 349

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
           A++SAG       +F  M+ +G+ P+ + Y++L KG   A          A+  L  M  
Sbjct: 350 AWSSAGLMDNCEEIFNDMVKAGIEPDIHAYSILAKGYVRAGQPR-----KAESLLTSMSK 404

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
            G++ N   +T +   +  A K+D A  L ++M   G  P+ K   E LI   G+ 
Sbjct: 405 YGVQTNVVIFTTIISGWCAAGKMDRAFSLCEKMHEMGTSPNLKTY-ETLIWGYGEA 459



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 72/168 (42%), Gaps = 8/168 (4%)

Query: 67  EPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVV 123
           + TD   + E    M   G+  + V    + +A S  GL     ++F  +   G  PD+ 
Sbjct: 318 DATDTNGVDEALTLMEEFGIKPDVVTFSTIMNAWSSAGLMDNCEEIFNDMVKAGIEPDIH 377

Query: 124 AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQK 183
           A++ + + Y  AGQ ++A  +   M   GV  N   +  +I G  AA       +  A  
Sbjct: 378 AYSILAKGYVRAGQPRKAESLLTSMSKYGVQTNVVIFTTIISGWCAAGK-----MDRAFS 432

Query: 184 YLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              +M   G  PN  TY  +   +  A++  +A  +L  M+ +G VP+
Sbjct: 433 LCEKMHEMGTSPNLKTYETLIWGYGEAKQPWKAEEILSTMEERGVVPE 480



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 80/163 (49%), Gaps = 15/163 (9%)

Query: 76  EIFHKMRTEGLT------NNAVKMFDALSKDGLTHEALQLFAQI-KDKGHMPDVVAHTAV 128
           +IF KM+  G        N  +K F  +   G  +E+++L   + +D+   P+   +  +
Sbjct: 151 KIFQKMKEYGCKPTTSTYNTLIKGFGIV---GRPYESMKLLEMMGQDENVKPNDRTYNIL 207

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I+A+ +  + +EA  V  +M+ASG+ P+  TY  + +  A A +G  +    A++ +++M
Sbjct: 208 IQAWCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMAR--AYAQNGETE---KAERLILKM 262

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
               ++PN  T   +   + +   + EA   L +MK  G  P+
Sbjct: 263 QYNKVKPNERTCGIIISGYCKEGNMTEALRFLYRMKELGVHPN 305



 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 10/139 (7%)

Query: 73  NLQEIFHKMRTEGLTNNAVKMFDALSKD----GLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           N +EIF+ M   G+  + +  +  L+K     G   +A  L   +   G   +VV  T +
Sbjct: 359 NCEEIFNDMVKAGIEPD-IHAYSILAKGYVRAGQPRKAESLLTSMSKYGVQTNVVIFTTI 417

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I  + +AG+   A  +  +M   G +PN  TY  LI G      G AK    A++ L  M
Sbjct: 418 ISGWCAAGKMDRAFSLCEKMHEMGTSPNLKTYETLIWGY-----GEAKQPWKAEEILSTM 472

Query: 189 VGKGMRPNAGTYTAVFEAF 207
             +G+ P   T   V +A+
Sbjct: 473 EERGVVPEMSTMQLVADAW 491


>gi|225423724|ref|XP_002276864.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Vitis vinifera]
          Length = 587

 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 82/159 (51%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++FH+MR++    N      + +A +++GL  +A ++F Q+++ G  PDV A+ A++EAY
Sbjct: 294 KVFHEMRSQKCKPNICTFTALVNAFAREGLCEKAEEIFEQLQEAGLEPDVYAYNALMEAY 353

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           + AG    A  +F  M   G  P+  +Y +++      A G A +  DAQ     M   G
Sbjct: 354 SRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVD-----AYGRAGLHEDAQAVFEVMKRLG 408

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + P   ++  +  A+ RA KV +   ++ QM   G  PD
Sbjct: 409 ITPTMKSHMLLLSAYSRAGKVAKCEEIVNQMHKSGIKPD 447



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 107/249 (42%), Gaps = 13/249 (5%)

Query: 2   AATAILRWLLHSPSPKRSLRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFK 61
           A   I  W+L+  S    +   N  ++A  Q+SL   ++    + +  +++  P  D + 
Sbjct: 150 AIVLICGWILYRSSFHPDVICYNLLIDAYGQKSLYKKAESTYLELL--EARCVPTEDTYA 207

Query: 62  KVVDEEPTDP--RNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDK 116
            ++    T       + +F +MR  G   +AV      D L K G T +A+++F ++K  
Sbjct: 208 LLLKAYCTSGLLEKAEAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRD 267

Query: 117 GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK 176
              P    +T +I  Y  A +   AL+VF  M +    PN  T+  L+   A        
Sbjct: 268 RCQPSTATYTMLINLYGKASKSYMALKVFHEMRSQKCKPNICTFTALVNAFAREG----- 322

Query: 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK 236
           +   A++   ++   G+ P+   Y A+ EA+ RA     A  +   M+  G  PD +A  
Sbjct: 323 LCEKAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPD-RASY 381

Query: 237 EALIDKRGQ 245
             ++D  G+
Sbjct: 382 NIMVDAYGR 390



 Score = 44.3 bits (103), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 14/167 (8%)

Query: 71  PRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P    EIF  M+  G   +      M DA  + GL  +A  +F  +K  G  P + +H  
Sbjct: 359 PYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHML 418

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKY--L 185
           ++ AY+ AG+  +   +  +M  SG+ P+ +    ++             LG  +K   +
Sbjct: 419 LLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGR--------LGQFEKMEEV 470

Query: 186 MEMVGKGMRP-NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +  + KG  P +  TY  +   + RA        L + + A+  +PD
Sbjct: 471 LTAMEKGPYPADISTYNILINIYGRAGFFARMEELFRSLPARNLIPD 517



 Score = 40.4 bits (93), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 3/67 (4%)

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
           +LF  +  +  +PDVV  T+ I AY+   Q    L VF  M+ +G  P+  T  VL   L
Sbjct: 504 ELFRSLPARNLIPDVVTWTSRIGAYSRRKQYNRCLEVFEEMIDAGCYPDGGTAKVL---L 560

Query: 168 AAAADGN 174
           +A ++G+
Sbjct: 561 SACSNGD 567


>gi|356523408|ref|XP_003530332.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18950-like [Glycine max]
          Length = 577

 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 63/127 (49%), Gaps = 5/127 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           E  Q+F  +KD+G+ PD V +T VI+      +  EA +++  M+  G  PN YTY V++
Sbjct: 301 EGFQVFNDLKDRGYFPDRVMYTTVIKGLCEMQRLGEARKLWFEMIKKGFQPNEYTYNVMM 360

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            G     D     L +A+K   +M  +G      +Y  +        + DEA+ L ++M 
Sbjct: 361 HGYCKIGD-----LAEARKIFEDMRDRGYAETTVSYGTMISGLCLHGRTDEAQSLFEEMF 415

Query: 225 AKGFVPD 231
            KG VPD
Sbjct: 416 QKGIVPD 422



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 8/126 (6%)

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
           +L  ++ + G  PD V    +I  +   GQ      +   M+A    P+  TY  +I GL
Sbjct: 235 ELLKELLENGLCPDNVVFNELIRGFCKEGQYDRVSEILHIMIAKQCNPDVSTYQEIIYGL 294

Query: 168 AAAADGNA-KILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK 226
               +    ++  D +        +G  P+   YT V +     Q++ EAR L  +M  K
Sbjct: 295 LKMKNSEGFQVFNDLKD-------RGYFPDRVMYTTVIKGLCEMQRLGEARKLWFEMIKK 347

Query: 227 GFVPDE 232
           GF P+E
Sbjct: 348 GFQPNE 353



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 82/186 (44%), Gaps = 19/186 (10%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           ++IF  MR  G     V    M   L   G T EA  LF ++  KG +PD++ +  +I+A
Sbjct: 373 RKIFEDMRDRGYAETTVSYGTMISGLCLHGRTDEAQSLFEEMFQKGIVPDLITYNCLIKA 432

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD--GNAKILGDAQ------- 182
                +  +A ++   +LA G+  + ++++ LIK L    +  G   +  D         
Sbjct: 433 LCKEVKIVKARKLLNLLLAQGLELSVFSFSPLIKQLCIVGNTKGAITLWKDMHDRLLEPT 492

Query: 183 ------KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK 236
                 ++L+ M+    +P   T+  +  +  +  ++D+   +L  M   G++  EK   
Sbjct: 493 ASIFGIEWLLNMLSWKQKPQKQTFEYLINSLSQENRLDDILVVLDFMFRIGYIL-EKGTI 551

Query: 237 EALIDK 242
            +L+ K
Sbjct: 552 YSLVSK 557



 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 23/76 (30%), Positives = 36/76 (47%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M     K G   EA ++F  ++D+G+    V++  +I      G+  EA  +F  M   G
Sbjct: 359 MMHGYCKIGDLAEARKIFEDMRDRGYAETTVSYGTMISGLCLHGRTDEAQSLFEEMFQKG 418

Query: 153 VAPNAYTYAVLIKGLA 168
           + P+  TY  LIK L 
Sbjct: 419 IVPDLITYNCLIKALC 434


>gi|255660928|gb|ACU25633.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
          Length = 481

 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 84/174 (48%), Gaps = 12/174 (6%)

Query: 78  FHKMRTEGL-----TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           F+KM  EG+     T N +     LS  G    A + F  +K +   PDVV +  +I  Y
Sbjct: 138 FNKMVNEGIEPTRHTFNVLIWGFFLS--GKVETANRFFEDLKSREITPDVVTYNTMINGY 195

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               + +EA + F+ M    + P   TY  LIKG A+        + DA + + EM G G
Sbjct: 196 TRVKKMEEAEKYFLEMKEKKIDPTVVTYTTLIKGYASIDR-----VDDALRLVEEMKGLG 250

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
           ++PNA TY+ +      A+K+ EAR LL++M  K   P + ++   LI  + + 
Sbjct: 251 IKPNAITYSTLLPGLCDAEKMSEARSLLKEMVDKYIAPKDNSIFIRLISSQCKA 304



 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 81/171 (47%), Gaps = 30/171 (17%)

Query: 91  VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           V M D+  K+G+  E+++LF ++++ G    + ++ A+ +  +  G+   + R F +M+ 
Sbjct: 84  VLMIDSYGKEGIVQESVKLFQKMEELGVERTIKSYDALFKVISRRGRYMMSKRYFNKMVN 143

Query: 151 SGVAPNAYTYAVLIKGLAAAA----------------------------DGNAKI--LGD 180
            G+ P  +T+ VLI G   +                             +G  ++  + +
Sbjct: 144 EGIEPTRHTFNVLIWGFFLSGKVETANRFFEDLKSREITPDVVTYNTMINGYTRVKKMEE 203

Query: 181 AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           A+KY +EM  K + P   TYT + + +    +VD+A  L+++MK  G  P+
Sbjct: 204 AEKYFLEMKEKKIDPTVVTYTTLIKGYASIDRVDDALRLVEEMKGLGIKPN 254



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 78/150 (52%), Gaps = 9/150 (6%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F  +++  +T + V    M +  ++     EA + F ++K+K   P VV +T +I+ YAS
Sbjct: 173 FEDLKSREITPDVVTYNTMINGYTRVKKMEEAEKYFLEMKEKKIDPTVVTYTTLIKGYAS 232

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
             +  +ALR+   M   G+ PNA TY+ L+ GL      +A+ + +A+  L EMV K + 
Sbjct: 233 IDRVDDALRLVEEMKGLGIKPNAITYSTLLPGLC-----DAEKMSEARSLLKEMVDKYIA 287

Query: 195 P-NAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           P +   +  +  +  +A  +D A  +L+ M
Sbjct: 288 PKDNSIFIRLISSQCKAGNLDAAADVLKAM 317


>gi|115468576|ref|NP_001057887.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|113595927|dbj|BAF19801.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|125597608|gb|EAZ37388.1| hypothetical protein OsJ_21726 [Oryza sativa Japonica Group]
          Length = 687

 Score = 80.5 bits (197), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 85/179 (47%), Gaps = 16/179 (8%)

Query: 78  FHKMRTEGLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F  M+ EG+  N V      DA  K+GL  EA++LFAQ++ +G   +   +T +I+    
Sbjct: 281 FAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCK 340

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
           AG+  +A+ +   M+  GV  N  TY VL+ GL        + + +A+  L  M   G+R
Sbjct: 341 AGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLC-----KERKVAEAEDVLRMMEKAGVR 395

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINI 253
            N   YT +       +  ++A GLL +MK KG   D        I   G   +G+ N+
Sbjct: 396 ANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELD--------ISLYGALIQGLCNV 446



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 81/162 (50%), Gaps = 8/162 (4%)

Query: 74  LQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           ++++  +MR  G   + V    + +   K G    A   FA +K +G M +VV  +  ++
Sbjct: 242 VEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVD 301

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
           A+   G  +EA+++F +M   G+A N +TY  LI G   A       L DA   L EMV 
Sbjct: 302 AFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGR-----LDDAIVLLDEMVR 356

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           +G+  N  TYT + +   + +KV EA  +L+ M+  G   +E
Sbjct: 357 QGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANE 398



 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 76/150 (50%), Gaps = 8/150 (5%)

Query: 78  FHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F+KMR  GL  N      + D L K+G  +EA+QLF ++  KG   D V +TA+++ Y  
Sbjct: 526 FNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLK 585

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            G   +A  +  +M+ SG+  + + Y   I G       N  ++ +A++   EM+G G+ 
Sbjct: 586 QGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFC-----NLNMMPEAREVFSEMIGHGIA 640

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           P+   Y  +   + +   ++EA  L  +M+
Sbjct: 641 PDRAVYNCLISKYQKLGNLEEAISLQDEME 670



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 74/160 (46%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +  KM   GL  N +    M DA  K G   EA+ +  +I D G  P+V+ + A+I+ 
Sbjct: 453 KSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDG 512

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              AG   EA+  F +M   G+ PN   Y  L+ GL          L +A +   EMV K
Sbjct: 513 LCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNG-----CLNEAVQLFNEMVHK 567

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           GM  +   YTA+ + +++   + +A  L  +M   G   D
Sbjct: 568 GMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLD 607



 Score = 70.1 bits (170), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 86/170 (50%), Gaps = 13/170 (7%)

Query: 77  IFHKMRTEGLTNNAVKMFDALSKDGLTH-----EALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +  +M+ +GL  + + ++ AL + GL +     EA  L  ++ + G  P+ + +T +++A
Sbjct: 420 LLSEMKNKGLELD-ISLYGALIQ-GLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDA 477

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              +G+  EA+ +  ++L SG  PN  TY  LI GL  A       + +A  +  +M   
Sbjct: 478 CFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGS-----IDEAISHFNKMRDL 532

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           G+ PN   YTA+ +   +   ++EA  L  +M  KG   D K V  AL+D
Sbjct: 533 GLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLD-KVVYTALLD 581



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 5/140 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K+G   EA  LF+++K+ G +PDVV   ++I+ Y   G+  E  ++   M  SG
Sbjct: 194 VIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSG 253

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
              +  TY  LI             +  A  Y   M  +G+  N  T++   +AF +   
Sbjct: 254 CKADVVTYNALINCFCKFGR-----METAYGYFAAMKREGVMANVVTFSTFVDAFCKEGL 308

Query: 213 VDEARGLLQQMKAKGFVPDE 232
           V EA  L  QM+ +G   +E
Sbjct: 309 VREAMKLFAQMRVRGMALNE 328



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 75/150 (50%), Gaps = 8/150 (5%)

Query: 103 THEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAV 162
           + +AL L +++K+KG   D+  + A+I+   +  +  EA  +  +M  SG+ PN   Y  
Sbjct: 414 SEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTT 473

Query: 163 LIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
           ++     A   + K+  +A   L +++  G +PN  TY A+ +   +A  +DEA     +
Sbjct: 474 MMD----ACFKSGKV-PEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNK 528

Query: 223 MKAKGFVPDEKAVKEALIDKRGQGFRGVIN 252
           M+  G  P+ +A   AL+D  G    G +N
Sbjct: 529 MRDLGLDPNVQAYT-ALVD--GLCKNGCLN 555


>gi|255660830|gb|ACU25584.1| pentatricopeptide repeat-containing protein [Xeroaloysia
           ovatifolia]
          Length = 418

 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 110/237 (46%), Gaps = 15/237 (6%)

Query: 2   AATAILRWLLHSPSPKRS-LRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPF 60
           +A+A+   +L +   +RS + + +  + A L+      + +  +  +  + K   P+D  
Sbjct: 47  SASAVFAAILETKGTQRSDIYVFSGLITAYLESGFLRDAIECYR--LTREHKFWVPFDTC 104

Query: 61  KKVVDEEPTDPRNLQEI--FHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIK 114
           +KV+ E     +  + +  F++   E     ++  F+ L     KDG    A  +F  I 
Sbjct: 105 RKVL-EHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHKFCKDGDIRVAQSVFNAIT 163

Query: 115 DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174
             G  P VV+   ++  Y   G   E  R+   M ASGV P+ YTY+VLI GL   +   
Sbjct: 164 KWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKTAMHASGVQPDVYTYSVLINGLCKESK-- 221

Query: 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              + DA +   EM+ KG+ PN  T+T + +   +  +VD A  + +QM ++   PD
Sbjct: 222 ---MDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 275



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 82/201 (40%), Gaps = 35/201 (17%)

Query: 63  VVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM 119
           +  E   D  N  E+F +M  +GL  N V    + D   K+G    A++++ Q+  +   
Sbjct: 216 LCKESKMDDAN--ELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 273

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD------- 172
           PD++ +  +I      G  K+A  +   M   G+ P+  TY  LI G     D       
Sbjct: 274 PDLITYNTLIYGLCRKGDLKQARDLIDEMSMKGLKPDKITYTTLIDGXCKEGDLETAFEH 333

Query: 173 ---------------GNAKILG--------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
                            A I G        DA+K L EM+  G++P+  TYT +   F +
Sbjct: 334 RKRMIQENIQLDDVGYTALISGLCQEGRYLDAEKVLREMLSVGLKPDTITYTMIINEFCK 393

Query: 210 AQKVDEARGLLQQMKAKGFVP 230
              V     LL++M+  G +P
Sbjct: 394 KGDVWTGSKLLKEMQRDGQMP 414



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 66/124 (53%), Gaps = 5/124 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K+    +A +LF ++ DKG +P+ V  T +I+ +   G+   A+ ++ +ML+  
Sbjct: 212 LINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQS 271

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           ++P+  TY  LI GL    D     L  A+  + EM  KG++P+  TYT + +   +   
Sbjct: 272 LSPDLITYNTLIYGLCRKGD-----LKQARDLIDEMSMKGLKPDKITYTTLIDGXCKEGD 326

Query: 213 VDEA 216
           ++ A
Sbjct: 327 LETA 330


>gi|357120470|ref|XP_003561950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 925

 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 75/157 (47%), Gaps = 8/157 (5%)

Query: 78  FHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           +H++  EGL  N +    + +AL KDG   +A  +  ++   G  PD   +T++I  Y  
Sbjct: 216 YHQILREGLQPNLLIYNSVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYCR 275

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
                 A  +F RM   G  PNA TY+ LI GL      N+  + +A  ++ EM   G+ 
Sbjct: 276 NRDLDSAFEIFNRMDEEGCEPNAATYSTLINGLC-----NSGRVNEALDFISEMTRHGVL 330

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           P   T+TA   A     ++++A  +   MK KG  P+
Sbjct: 331 PTVHTFTAPIVALCDMGRIEDAWKIFIDMKKKGCKPN 367



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 76/159 (47%), Gaps = 8/159 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +FH+M  +G+  N V    + + L ++     AL +F  +   G +P+  ++  +I  Y 
Sbjct: 387 LFHRMSRDGVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYC 446

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
           + G  ++A+ +   ML     P   TY ++IKG   + D +  I     + L  M   G 
Sbjct: 447 TIGDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAI-----RVLELMKANGC 501

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           +P+  +YT +   F +  K++ A G+  +M  +G  P+E
Sbjct: 502 QPDEWSYTELISGFCKISKMELASGMFNEMMDRGLCPNE 540



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 74/167 (44%), Gaps = 11/167 (6%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           EIF++M  EG   NA     + + L   G  +EAL   +++   G +P V   TA I A 
Sbjct: 284 EIFNRMDEEGCEPNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPTVHTFTAPIVAL 343

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+ ++A ++F+ M   G  PN YTY  LI G         ++   A      M   G
Sbjct: 344 CDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLISG--------QRVSRMAIGLFHRMSRDG 395

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
           + PN  TY A+    +   ++D A  +   M   G +P+  +  E +
Sbjct: 396 VVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELI 442



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 75/158 (47%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F+ M   G    T++  ++       G T +A+ +   +      P +V +  +I+ Y 
Sbjct: 422 VFNMMGKHGCLPNTSSYNELIRGYCTIGDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYC 481

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            +G    A+RV   M A+G  P+ ++Y  LI G    +      +  A     EM+ +G+
Sbjct: 482 DSGDTDVAIRVLELMKANGCQPDEWSYTELISGFCKISK-----MELASGMFNEMMDRGL 536

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            PN  TYTA+   + + +K+D A  +L++MK  G  P+
Sbjct: 537 CPNEVTYTALISGYCKDEKLDCAARMLERMKRSGCRPN 574



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 30/154 (19%)

Query: 109 LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
           +F ++ D+G  P+ V +TA+I  Y    +   A R+  RM  SG  PN  TY VLI GL 
Sbjct: 527 MFNEMMDRGLCPNEVTYTALISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLT 586

Query: 169 -----AAADGNAKILGD-------------------------AQKYLMEMVGKGMRPNAG 198
                + A+   K++ +                         A +   +MV  G  PN  
Sbjct: 587 KQNNFSGAEELCKVMLEEKISPDVVTYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLH 646

Query: 199 TYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           TY+++ +A  +  +V+EA  +  ++K +G +PDE
Sbjct: 647 TYSSLIQALGQEGRVEEAEEMFSELKKQGLIPDE 680



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 5/134 (3%)

Query: 97  LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
           L+K  +T   +  + QI  +G  P+++ + +VI A    G  ++A  +  ++  SG+ P+
Sbjct: 203 LNKLNMTSTVMDRYHQILREGLQPNLLIYNSVINALCKDGNVRDAESIINKVFKSGMKPD 262

Query: 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
            +TY  +I G     D     L  A +    M  +G  PNA TY+ +      + +V+EA
Sbjct: 263 TFTYTSMILGYCRNRD-----LDSAFEIFNRMDEEGCEPNAATYSTLINGLCNSGRVNEA 317

Query: 217 RGLLQQMKAKGFVP 230
              + +M   G +P
Sbjct: 318 LDFISEMTRHGVLP 331



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 77/159 (48%), Gaps = 12/159 (7%)

Query: 77  IFHKMRTEGLTNNAVKMFDALSKDGLTHE-----ALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +  +M+  G   N V+ ++ L   GLT +     A +L   + ++   PDVV ++ VI  
Sbjct: 562 MLERMKRSGCRPN-VQTYNVLIH-GLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVING 619

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
             + G    AL +F +M+  G  PN +TY+ LI+ L     G    + +A++   E+  +
Sbjct: 620 LCNNGAIPLALEMFNKMVKHGCLPNLHTYSSLIQAL-----GQEGRVEEAEEMFSELKKQ 674

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           G+ P+  TY  + E  V + KVD A   L +M   G  P
Sbjct: 675 GLIPDEVTYVKMIEVCVMSGKVDRAFDFLGEMINAGCQP 713



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 69/164 (42%), Gaps = 5/164 (3%)

Query: 76  EIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASA 135
           +IF  M+ +G   N       +S   ++  A+ LF ++   G +P+ V + A++      
Sbjct: 354 KIFIDMKKKGCKPNVYTYTSLISGQRVSRMAIGLFHRMSRDGVVPNTVTYNALMNVLMEN 413

Query: 136 GQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP 195
            +   AL VF  M   G  PN  +Y  LI+G     D        A   L  M+     P
Sbjct: 414 MEIDSALIVFNMMGKHGCLPNTSSYNELIRGYCTIGDTE-----KAMSMLTNMLKGRPTP 468

Query: 196 NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
              TY  + + +  +   D A  +L+ MKA G  PDE +  E +
Sbjct: 469 TLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTELI 512



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 81/185 (43%), Gaps = 20/185 (10%)

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F+KM   G   N      +  AL ++G   EA ++F+++K +G +PD V +  +IE  
Sbjct: 631 EMFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQGLIPDEVTYVKMIEVC 690

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL---------------AAAADGNAKI 177
             +G+   A      M+ +G  P   TY VLIKGL               A+ +  + +I
Sbjct: 691 VMSGKVDRAFDFLGEMINAGCQPTLQTYDVLIKGLQNEMVYHKLVALPNAASTSTFDDQI 750

Query: 178 LG-DAQKYLMEMVGK-GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAV 235
           +  D    L   + +     +   Y A+     R+ +  EA  L + M ++   P++   
Sbjct: 751 INKDVISVLSSKLAELDFELSRQLYDALLSRLSRSGRWFEANNLYRSMVSQSQCPNQDTY 810

Query: 236 KEALI 240
           K  LI
Sbjct: 811 KHFLI 815


>gi|52075946|dbj|BAD46026.1| PPR-protein-like [Oryza sativa Japonica Group]
          Length = 629

 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 70/138 (50%), Gaps = 5/138 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +AL +     EA +L   ++ +G  PD+V +  VI      G+  +A +VF  M  SG
Sbjct: 284 VLNALCRKKQLREAYRLLCLMRGRGVSPDIVHYNTVIVGVCREGRPLDACKVFGDMRESG 343

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            APNA TY  ++ GL         +   A+ YL +M+GKG+ P+     +V +      K
Sbjct: 344 CAPNAVTYTAVVNGLCVNG-----LYDKAEAYLDDMLGKGLLPHFSVLHSVIKGCCAVGK 398

Query: 213 VDEARGLLQQMKAKGFVP 230
           V+EA G++ +M   G VP
Sbjct: 399 VNEAAGMMTRMLDLGMVP 416



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 73/157 (46%), Gaps = 8/157 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +FH++R+  ++ NA     +  +L + G  H A  L  ++  +G   D +A+T V+ A  
Sbjct: 230 LFHRLRSLHVSPNAETYRILTQSLCRRGQVHTAATLLDEMLHRGIPADPLAYTTVLNALC 289

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
              Q +EA R+   M   GV+P+   Y  +I G+    +G      DA K   +M   G 
Sbjct: 290 RKKQLREAYRLLCLMRGRGVSPDIVHYNTVIVGV--CREGRPL---DACKVFGDMRESGC 344

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
            PNA TYTAV          D+A   L  M  KG +P
Sbjct: 345 APNAVTYTAVVNGLCVNGLYDKAEAYLDDMLGKGLLP 381



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 63/129 (48%), Gaps = 8/129 (6%)

Query: 106 ALQLFAQIKDKGHMPD---VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAV 162
           AL L   +  +  +P+   + +H  +IEA   +G    ++ +F R+ +  V+PNA TY +
Sbjct: 189 ALHLLRDVSTRLPLPEPLVLASHNLLIEAATRSGHLAVSISLFHRLRSLHVSPNAETYRI 248

Query: 163 LIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
           L + L          +  A   L EM+ +G+  +   YT V  A  R +++ EA  LL  
Sbjct: 249 LTQSLCRRGQ-----VHTAATLLDEMLHRGIPADPLAYTTVLNALCRKKQLREAYRLLCL 303

Query: 223 MKAKGFVPD 231
           M+ +G  PD
Sbjct: 304 MRGRGVSPD 312



 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 3/116 (2%)

Query: 71  PRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P +  ++F  MR  G   NAV    + + L  +GL  +A      +  KG +P      +
Sbjct: 329 PLDACKVFGDMRESGCAPNAVTYTAVVNGLCVNGLYDKAEAYLDDMLGKGLLPHFSVLHS 388

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQK 183
           VI+   + G+  EA  +  RML  G+ P+A T++ +I+ + +  D    +L    K
Sbjct: 389 VIKGCCAVGKVNEAAGMMTRMLDLGMVPHAETWSSVIRSVCSDEDNVEVVLLQVMK 444


>gi|414869870|tpg|DAA48427.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
 gi|414869871|tpg|DAA48428.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
          Length = 741

 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 87/179 (48%), Gaps = 31/179 (17%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D     G    A+ +F  ++ KG +P+V  +T +I  +  +G+ + A+ ++ RM+ +G
Sbjct: 220 LIDGYCSTGDLELAIDIFKGMQSKGCLPNVRTYTQLICGFCKSGKVERAMVLYSRMIEAG 279

Query: 153 VAPNAYTYAVLIKGLA--------------------AAADGNAKILGD----------AQ 182
           +APN  TY  LI+G                      A  +    +L D          AQ
Sbjct: 280 LAPNVVTYTTLIQGQCSEGHLEHAFRLLHSMEACGLAPNEWTCLVLIDALCKHGRIEEAQ 339

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           ++L  +V KG++ N   YT++ +A  ++ K D A  L+Q++  +GFVPD   +  +LID
Sbjct: 340 QFLGSLVQKGIKVNQVIYTSMIDALCKSGKFDGAHNLMQKIITEGFVPDAH-MYSSLID 397



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 72/143 (50%), Gaps = 5/143 (3%)

Query: 98  SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA 157
            + GL   A +LF  +  +G       + A+++    AG  +EA+ VF  M   G AP++
Sbjct: 120 CRTGLFAHACRLFLLMPQRGCARTPFTYAALLQGLCGAGMVREAMAVFAGMWPDGCAPDS 179

Query: 158 YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
           + Y++++ GL  A  G A   G+A   L + +GKG  PN   Y A+ + +     ++ A 
Sbjct: 180 HVYSIMVHGLCGA--GRA---GEAVALLTDAMGKGFVPNVAVYNALIDGYCSTGDLELAI 234

Query: 218 GLLQQMKAKGFVPDEKAVKEALI 240
            + + M++KG +P+ +   + + 
Sbjct: 235 DIFKGMQSKGCLPNVRTYTQLIC 257



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 65/149 (43%), Gaps = 6/149 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M   L   G   EA+ L      KG +P+V  + A+I+ Y S G  + A+ +F  M + G
Sbjct: 185 MVHGLCGAGRAGEAVALLTDAMGKGFVPNVAVYNALIDGYCSTGDLELAIDIFKGMQSKG 244

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN  TY  LI G   +       +  A      M+  G+ PN  TYT + +       
Sbjct: 245 CLPNVRTYTQLICGFCKSGK-----VERAMVLYSRMIEAGLAPNVVTYTTLIQGQCSEGH 299

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALID 241
           ++ A  LL  M+A G  P+E      LID
Sbjct: 300 LEHAFRLLHSMEACGLAPNEWTCL-VLID 327



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 77/158 (48%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNN---AVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           + H M   GL  N    + + DAL K G   EA Q    +  KG   + V +T++I+A  
Sbjct: 306 LLHSMEACGLAPNEWTCLVLIDALCKHGRIEEAQQFLGSLVQKGIKVNQVIYTSMIDALC 365

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            +G+   A  +  +++  G  P+A+ Y+ LI GL        K+L +A   L +M+  G+
Sbjct: 366 KSGKFDGAHNLMQKIITEGFVPDAHMYSSLIDGLCR----ENKLL-EAISLLNDMIESGV 420

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + NA  +T + +  +R  + D  + +  +M A G  PD
Sbjct: 421 QANAVPFTILIDKHLREFRSDSPKMISDRMAAAGVKPD 458



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 59/139 (42%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L   G+  EA+ +FA +   G  PD   ++ ++     AG+  EA+ +    +  G
Sbjct: 150 LLQGLCGAGMVREAMAVFAGMWPDGCAPDSHVYSIMVHGLCGAGRAGEAVALLTDAMGKG 209

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN   Y  LI G  +  D     L  A      M  KG  PN  TYT +   F ++ K
Sbjct: 210 FVPNVAVYNALIDGYCSTGD-----LELAIDIFKGMQSKGCLPNVRTYTQLICGFCKSGK 264

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V+ A  L  +M   G  P+
Sbjct: 265 VERAMVLYSRMIEAGLAPN 283



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 58/125 (46%), Gaps = 6/125 (4%)

Query: 117 GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK 176
           G  PD  A+T+ +  Y   G    A R+F+ M   G A   +TYA L++GL  A      
Sbjct: 104 GLAPDSHAYTSFVLGYCRTGLFAHACRLFLLMPQRGCARTPFTYAALLQGLCGAG----- 158

Query: 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK 236
           ++ +A      M   G  P++  Y+ +      A +  EA  LL     KGFVP+  AV 
Sbjct: 159 MVREAMAVFAGMWPDGCAPDSHVYSIMVHGLCGAGRAGEAVALLTDAMGKGFVPN-VAVY 217

Query: 237 EALID 241
            ALID
Sbjct: 218 NALID 222



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 76/163 (46%), Gaps = 8/163 (4%)

Query: 75  QEIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
             +  K+ TEG   +A     + D L ++    EA+ L   + + G   + V  T +I+ 
Sbjct: 374 HNLMQKIITEGFVPDAHMYSSLIDGLCRENKLLEAISLLNDMIESGVQANAVPFTILIDK 433

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +    +      +  RM A+GV P+  TY V I+  +   DG  +   DA+  +++M+  
Sbjct: 434 HLREFRSDSPKMISDRMAAAGVKPDVVTYTVFIR--SYCQDGRME---DAESMMIQMIDH 488

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
           G+RPN  TY  + + +     V +A   L+ M   G  P++++
Sbjct: 489 GVRPNLTTYNTLIKGYANLGLVSQAFSSLKNMIDNGCKPNDES 531



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 5/93 (5%)

Query: 117 GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK 176
           G  PDVV +T  I +Y   G+ ++A  + ++M+  GV PN  TY  LIKG A     N  
Sbjct: 454 GVKPDVVTYTVFIRSYCQDGRMEDAESMMIQMIDHGVRPNLTTYNTLIKGYA-----NLG 508

Query: 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
           ++  A   L  M+  G +PN  +YT +    ++
Sbjct: 509 LVSQAFSSLKNMIDNGCKPNDESYTVLLGLLLK 541



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/191 (21%), Positives = 87/191 (45%), Gaps = 18/191 (9%)

Query: 59  PFKKVVDEEPTDPRN--LQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQI 113
           PF  ++D+   + R+   + I  +M   G+  + V       +  +DG   +A  +  Q+
Sbjct: 426 PFTILIDKHLREFRSDSPKMISDRMAAAGVKPDVVTYTVFIRSYCQDGRMEDAESMMIQM 485

Query: 114 KDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADG 173
            D G  P++  +  +I+ YA+ G   +A      M+ +G  PN  +Y VL+ GL    + 
Sbjct: 486 IDHGVRPNLTTYNTLIKGYANLGLVSQAFSSLKNMIDNGCKPNDESYTVLL-GLLLKKNS 544

Query: 174 NAKILGDA--------QKYLMEMVGKGMRPNAGTYTAVFEAFVRA----QKVDEARGLLQ 221
              ++ D+         K L E++ + ++    + + V++ F+R      +++EA+  L 
Sbjct: 545 YHDLVADSISLWKIVDMKVLEELLEEVIKLQCSSASYVYDCFIRCLSKVDRLEEAKSFLV 604

Query: 222 QMKAKGFVPDE 232
            M++    P E
Sbjct: 605 GMQSANLTPSE 615


>gi|413951894|gb|AFW84543.1| hypothetical protein ZEAMMB73_135692 [Zea mays]
          Length = 575

 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 71/134 (52%), Gaps = 5/134 (3%)

Query: 98  SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA 157
           S+    +EA Q FA++  +G +P+ + + ++I A   AG   EA ++   M  SG+ P+ 
Sbjct: 237 SRLDYVNEAYQAFAEMTSRGIVPNNITYNSIISALCKAGNMTEAFKLEQNMRQSGLVPDI 296

Query: 158 YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
           YT  +LI GL    +G  K++ +    L++M   G+ P+  TY  +  A+ RAQ ++ A 
Sbjct: 297 YTSNILIDGL--CREGKLKMVDNL---LLDMCSNGLTPDTVTYNTIINAYCRAQDMNSAM 351

Query: 218 GLLQQMKAKGFVPD 231
             + +M   G  PD
Sbjct: 352 NFMNKMLVAGCEPD 365



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 71/157 (45%), Gaps = 8/157 (5%)

Query: 78  FHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F +M + G+  N +    +  AL K G   EA +L   ++  G +PD+     +I+    
Sbjct: 249 FAEMTSRGIVPNNITYNSIISALCKAGNMTEAFKLEQNMRQSGLVPDIYTSNILIDGLCR 308

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            G+ K    + + M ++G+ P+  TY  +I     A D N+     A  ++ +M+  G  
Sbjct: 309 EGKLKMVDNLLLDMCSNGLTPDTVTYNTIINAYCRAQDMNS-----AMNFMNKMLVAGCE 363

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           P+  TY     +  R   +++A  LL ++ A    P+
Sbjct: 364 PDIFTYNIWMHSLYRNHMLNQAGKLLDELVAVDCSPN 400



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 75/183 (40%), Gaps = 16/183 (8%)

Query: 73  NLQEIF---HKMRTEGL-----TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVA 124
           N+ E F     MR  GL     T+N   + D L ++G       L   +   G  PD V 
Sbjct: 276 NMTEAFKLEQNMRQSGLVPDIYTSNI--LIDGLCREGKLKMVDNLLLDMCSNGLTPDTVT 333

Query: 125 HTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKY 184
           +  +I AY  A     A+    +ML +G  P+ +TY + +  L         +L  A K 
Sbjct: 334 YNTIINAYCRAQDMNSAMNFMNKMLVAGCEPDIFTYNIWMHSLY-----RNHMLNQAGKL 388

Query: 185 LMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRG 244
           L E+V     PN+ TY  + +  + +  +D A  L  ++    F P+   +   L     
Sbjct: 389 LDELVAVDCSPNSVTYNTLMDG-ICSDVLDRAMILTGRLIKMAFKPNTITLNVFLSHFCK 447

Query: 245 QGF 247
           QGF
Sbjct: 448 QGF 450



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 68/167 (40%), Gaps = 25/167 (14%)

Query: 84  EGLTNNAVKMFDALSKDGLT-------------------HEALQLFAQIKDKGHMPDVVA 124
           EGL   A +++  ++K GLT                    EA  L   +  KG+     +
Sbjct: 135 EGLHEEASELYRIINKLGLTPSSSTFNYLIMGLCNQVRLDEAQLLLEHMVSKGYCLST-S 193

Query: 125 HTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKY 184
            T  ++AY   G    AL+ +  M    +  +   ++  I G +         + +A + 
Sbjct: 194 FTICLDAYFRDGNAVGALKCWDDMGKIDLQTDFIAFSAYINGRS-----RLDYVNEAYQA 248

Query: 185 LMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             EM  +G+ PN  TY ++  A  +A  + EA  L Q M+  G VPD
Sbjct: 249 FAEMTSRGIVPNNITYNSIISALCKAGNMTEAFKLEQNMRQSGLVPD 295



 Score = 37.0 bits (84), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 32/59 (54%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
           EA +LF Q+   G   + +    +I+ YA +GQ  +A   +  M A G+ P++ T+ ++
Sbjct: 3   EARRLFDQMAQVGIQVNTITFNVLIDGYAKSGQMHQASAAYREMQARGLVPDSCTFNII 61


>gi|410109927|gb|AFV61043.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           javanica]
          Length = 431

 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 111/237 (46%), Gaps = 15/237 (6%)

Query: 2   AATAILRWLLHSPSPKRS-LRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPF 60
           +A+A+   +L +   +RS + + +  + A L+      + +  +  +  + KL  P+D  
Sbjct: 53  SASAVFAAILETKGTQRSDIYVFSGLITAYLESGFLRDAIECYR--LTREHKLWVPFDTC 110

Query: 61  KKVVDEEPTDPRNLQEI--FHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIK 114
           +KV+ E     R  + +  F++   E     ++  F+ L     KDG    A  +F  I 
Sbjct: 111 RKVL-EHLMKLRYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAIT 169

Query: 115 DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174
             G  P V ++  ++  Y   G   E  R+   M ASGV P+ YTY+VLI GL   +   
Sbjct: 170 KWGLRPXVXSYNTLMNGYIRLGXLDEGFRLKSAMXASGVQPDVYTYSVLINGLXKES--- 226

Query: 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              + D  +   EM+ KG+ PN+ T+T + +   +  +VD A  + +QM ++   PD
Sbjct: 227 --XMDDXNELFDEMLXKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQXLXPD 281



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 82/198 (41%), Gaps = 35/198 (17%)

Query: 66  EEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDV 122
           E   D  N  E+F +M  +GL  N+V    + D   K+G    A++++ Q+  +   PD 
Sbjct: 225 ESXMDDXN--ELFDEMLXKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQXLXPDF 282

Query: 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK------ 176
           + +  +       G   +A  +   M   G+ P+ +TY  LI G     D +A       
Sbjct: 283 ITYNTLXYGLCKKGDLNQAHGLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRKR 342

Query: 177 ----------------ILG--------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
                           I G        DA+K L EM+  G++P+ GTYT +   F +   
Sbjct: 343 MIQENIXLDDVAYTALISGLCQEGRSXDAEKMLREMLSVGLKPDXGTYTMIINEFCKKGD 402

Query: 213 VDEARGLLQQMKAKGFVP 230
           V +    L++M+  G VP
Sbjct: 403 VWKGXKXLKEMQRNGHVP 420


>gi|357499677|ref|XP_003620127.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495142|gb|AES76345.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 412

 Score = 80.1 bits (196), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M    L  + V    + + L K G    AL+L  ++ D+G  PD++ ++++++A  
Sbjct: 227 LFEEMHCRKLIPDVVTYNSLINGLCKSGKISYALKLVDEMHDRGQPPDIITYSSLLDALC 286

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
              Q  +A+ +   +   G+ PN YTY +LI GL          L DA     +++ KG 
Sbjct: 287 KNHQVDKAIALLKNLKDQGIRPNMYTYTILIDGLCKGGR-----LEDAHNIFEDLLVKGY 341

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
                TYT +   F      DEA  LL +MK     P+
Sbjct: 342 NITVNTYTVMIHGFCNKGLFDEALALLSKMKDNSCFPN 379



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 75/160 (46%), Gaps = 8/160 (5%)

Query: 72  RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
            N + IF  M   G+T N      M +   K  +T EA+ LF ++  +  +PDVV + ++
Sbjct: 187 NNAKGIFSTMSLRGVTANVWSYNIMINGFCKIKMTDEAMNLFEEMHCRKLIPDVVTYNSL 246

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I     +G+   AL++   M   G  P+  TY+ L+  L      +  I       L  +
Sbjct: 247 INGLCKSGKISYALKLVDEMHDRGQPPDIITYSSLLDALCKNHQVDKAI-----ALLKNL 301

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
             +G+RPN  TYT + +   +  ++++A  + + +  KG+
Sbjct: 302 KDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGY 341



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 5/137 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DAL K+    +A+ L   +KD+G  P++  +T +I+     G+ ++A  +F  +L  G
Sbjct: 281 LLDALCKNHQVDKAIALLKNLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKG 340

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
                 TY V+I G       N  +  +A   L +M      PNA TY  +  +     +
Sbjct: 341 YNITVNTYTVMIHGFC-----NKGLFDEALALLSKMKDNSCFPNALTYEIIIRSLFDNDE 395

Query: 213 VDEARGLLQQMKAKGFV 229
            D+A  LL++M  +G +
Sbjct: 396 NDKAENLLREMITRGLL 412



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 81/177 (45%), Gaps = 9/177 (5%)

Query: 75  QEIFHKMRTEGLTNNAVKMFDALSKDGLTHE---ALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +   M  +G+  NAV     +    L +E   A  +F+ +  +G   +V ++  +I  
Sbjct: 155 KNVLAMMMKQGINPNAVTYSSLMDGYCLVNEVNNAKGIFSTMSLRGVTANVWSYNIMING 214

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +       EA+ +F  M    + P+  TY  LI GL  +       +  A K + EM  +
Sbjct: 215 FCKIKMTDEAMNLFEEMHCRKLIPDVVTYNSLINGLCKSGK-----ISYALKLVDEMHDR 269

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFR 248
           G  P+  TY+++ +A  +  +VD+A  LL+ +K +G  P+       LID   +G R
Sbjct: 270 GQPPDIITYSSLLDALCKNHQVDKAIALLKNLKDQGIRPNMYTYT-ILIDGLCKGGR 325



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 75/188 (39%), Gaps = 29/188 (15%)

Query: 66  EEPTDPRNLQEIFHKMRTEGLTNNAVKMFD----------ALSKDGLTHEALQLFAQIKD 115
           ++PT   N Q+  H     G  N      D           L +D L  +A     Q+ D
Sbjct: 59  DDPTQYLNYQDQVHDTTDGGYDNQQFLDGDDVQQGEDVVPQLDEDDLASQAAS--KQLPD 116

Query: 116 KGHMPDVVAHTAVIEAYA------------SAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
           +   P    + +++ +YA            + G  KEA  V   M+  G+ PNA TY+ L
Sbjct: 117 QPPFPGGPLNISLLSSYALHVALPLWYNANNEGNVKEAKNVLAMMMKQGINPNAVTYSSL 176

Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           + G     + N     +A+     M  +G+  N  +Y  +   F + +  DEA  L ++M
Sbjct: 177 MDGYCLVNEVN-----NAKGIFSTMSLRGVTANVWSYNIMINGFCKIKMTDEAMNLFEEM 231

Query: 224 KAKGFVPD 231
             +  +PD
Sbjct: 232 HCRKLIPD 239


>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score = 80.1 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 9/168 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           ++HKM  +GL    V    + + L  +G    A  +F  +   G +P    +  +I+ + 
Sbjct: 364 LYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFC 423

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G  ++A+ +F +ML +G +PN  TY  LI G      GN   L +A + L  M G G+
Sbjct: 424 LMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGY--CKQGN---LNNAMRLLEIMKGNGL 478

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           +P+A TYT +   F R  K++ A  L   M   G  P+      A+ID
Sbjct: 479 KPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNH-VTYTAIID 525



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 80/162 (49%), Gaps = 8/162 (4%)

Query: 73  NLQEIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           N   +   M+  GL  +A    ++    S+ G    A  LF  + + G  P+ V +TA+I
Sbjct: 465 NAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAII 524

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
           + Y +  +  +AL +F +M+ SG  P++ TY V+I G +         + +A+ +  +MV
Sbjct: 525 DGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNS-----ISEAENFCGKMV 579

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +G+ PN  TYT+  +   R  +   A  +  +M+ + + P+
Sbjct: 580 KQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPN 621



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           IF KM   G + N +    +     K G  + A++L   +K  G  PD   +T +I  ++
Sbjct: 434 IFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFS 493

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G+ + A  +F  M+  G++PN  TY  +I G       N   + DA     +MV  G 
Sbjct: 494 RGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYF-----NLAKVDDALALFWKMVESGN 548

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            P++ TY  +   F +   + EA     +M  +G +P+
Sbjct: 549 LPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPN 586



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 5/133 (3%)

Query: 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
           G   +A+ +F ++   G  P+V+ +  +I  Y   G    A+R+   M  +G+ P+A+TY
Sbjct: 426 GDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTY 485

Query: 161 AVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
             LI G +         L  A      M+  G+ PN  TYTA+ + +    KVD+A  L 
Sbjct: 486 TELISGFSRGGK-----LEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALF 540

Query: 221 QQMKAKGFVPDEK 233
            +M   G +P  +
Sbjct: 541 WKMVESGNLPSSQ 553



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/150 (30%), Positives = 69/150 (46%), Gaps = 7/150 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M    SK     EA     ++  +G +P+V+ +T+ I+     G+   A ++F  M    
Sbjct: 558 MISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRN 617

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKY--LMEMVGKGMRPNAGTYTAVFEAFVRA 210
             PN YTY+ LI GL    +G A+   DA+ Y  L  +   G  PN  TYT + +     
Sbjct: 618 YFPNLYTYSSLIYGL--CQEGRAE---DAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGE 672

Query: 211 QKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
            +  EA  L+  M+ KG  P E+  +  LI
Sbjct: 673 GRCYEADQLVVSMQKKGLQPSEEIYRALLI 702



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 51/189 (26%), Positives = 85/189 (44%), Gaps = 17/189 (8%)

Query: 76  EIFHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           E+  KM+  G   N ++ F AL    S+DG    A+ L+ ++   G +P  V + A+I  
Sbjct: 328 ELLGKMKKRGCVPN-IQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQ 386

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM---EM 188
               G+ + A  +F  ML+ G  P+  TY  +IK           ++GD QK ++   +M
Sbjct: 387 LCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFC--------LMGDIQKAMVIFDKM 438

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID-KRGQGF 247
           +  G  PN  TY  +   + +   ++ A  LL+ MK  G  PD     E +    RG   
Sbjct: 439 LKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKL 498

Query: 248 RGVINILFG 256
               ++ +G
Sbjct: 499 EHATSLFYG 507



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 48/160 (30%), Positives = 74/160 (46%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           ++++ KM   G+  + +    M + L K G   EA  + + I      P+   +T++I  
Sbjct: 187 RDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILG 246

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +        A  +F RM+  G  PN+ TY+ LI GL +        L +A   L EMV K
Sbjct: 247 HCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGR-----LEEAMDMLEEMVQK 301

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G+ P   TYT    +   A    EA  LL +MK +G VP+
Sbjct: 302 GIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPN 341



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 81/168 (48%), Gaps = 13/168 (7%)

Query: 80  KMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           KM  +GL  N +      D L ++G T  A ++F +++ + + P++  ++++I      G
Sbjct: 577 KMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEG 636

Query: 137 QGKEA--LRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
           + ++A    +  R+   G  PN  TY  L+KGL     G  +   +A + ++ M  KG++
Sbjct: 637 RAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLC----GEGRCY-EADQLVVSMQKKGLQ 691

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF---VPDEKAVKEAL 239
           P+   Y A+     +  KV+ A  +   M   GF   + D KA+  AL
Sbjct: 692 PSEEIYRALLIGECKNLKVESALNIFYSMDTLGFQLHLSDYKALICAL 739



 Score = 61.2 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 74/166 (44%), Gaps = 8/166 (4%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M  +G   N+V    + + L  +G   EA+ +  ++  KG  P V  +T  + +  
Sbjct: 259 MFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLC 318

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG   EA+ +  +M   G  PN  T+  LI GL  + DG  +I   A     +M+  G+
Sbjct: 319 DAGCSSEAVELLGKMKKRGCVPNIQTFTALISGL--SRDGKFEI---AIGLYHKMLADGL 373

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
            P   TY A+        + + A  + + M + G +P  +   E +
Sbjct: 374 VPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEII 419



 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%)

Query: 97  LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
           L K  +   A  ++ ++ + G  P ++    +I      G+ +EA  +   +      PN
Sbjct: 177 LGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPN 236

Query: 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
           A+TY  LI G     +     L  A      MV  G  PN+ TY+ +        +++EA
Sbjct: 237 AFTYTSLILGHCRNHN-----LDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEA 291

Query: 217 RGLLQQMKAKGFVP 230
             +L++M  KG  P
Sbjct: 292 MDMLEEMVQKGIEP 305


>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score = 80.1 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 50/168 (29%), Positives = 80/168 (47%), Gaps = 9/168 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           ++HKM  +GL    V    + + L  +G    A  +F  +   G +P    +  +I+ + 
Sbjct: 364 LYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFC 423

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G  ++A+ +F +ML +G +PN  TY  LI G      GN   L +A + L  M G G+
Sbjct: 424 LMGDIQKAMVIFDKMLKAGSSPNVITYNTLIYGY--CKQGN---LNNAMRLLEIMKGNGL 478

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           +P+A TYT +   F R  K++ A  L   M   G  P+      A+ID
Sbjct: 479 KPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNH-VTYTAIID 525



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 80/162 (49%), Gaps = 8/162 (4%)

Query: 73  NLQEIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           N   +   M+  GL  +A    ++    S+ G    A  LF  + + G  P+ V +TA+I
Sbjct: 465 NAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAII 524

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
           + Y +  +  +AL +F +M+ SG  P++ TY V+I G +         + +A+ +  +MV
Sbjct: 525 DGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNS-----ISEAENFCGKMV 579

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +G+ PN  TYT+  +   R  +   A  +  +M+ + + P+
Sbjct: 580 KQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPN 621



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           IF KM   G + N +    +     K G  + A++L   +K  G  PD   +T +I  ++
Sbjct: 434 IFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFS 493

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G+ + A  +F  M+  G++PN  TY  +I G       N   + DA     +MV  G 
Sbjct: 494 RGGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYF-----NLAKVDDALALFWKMVESGN 548

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            P++ TY  +   F +   + EA     +M  +G +P+
Sbjct: 549 LPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPN 586



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 5/133 (3%)

Query: 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
           G   +A+ +F ++   G  P+V+ +  +I  Y   G    A+R+   M  +G+ P+A+TY
Sbjct: 426 GDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTY 485

Query: 161 AVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
             LI G +         L  A      M+  G+ PN  TYTA+ + +    KVD+A  L 
Sbjct: 486 TELISGFSRGGK-----LEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALF 540

Query: 221 QQMKAKGFVPDEK 233
            +M   G +P  +
Sbjct: 541 WKMVESGNLPSSQ 553



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/150 (30%), Positives = 69/150 (46%), Gaps = 7/150 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M    SK     EA     ++  +G +P+V+ +T+ I+     G+   A ++F  M    
Sbjct: 558 MISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRN 617

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKY--LMEMVGKGMRPNAGTYTAVFEAFVRA 210
             PN YTY+ LI GL    +G A+   DA+ Y  L  +   G  PN  TYT + +     
Sbjct: 618 YFPNLYTYSSLIYGL--CQEGRAE---DAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGE 672

Query: 211 QKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
            +  EA  L+  M+ KG  P E+  +  LI
Sbjct: 673 GRCYEADQLVVSMQKKGLQPSEEIYRALLI 702



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 51/189 (26%), Positives = 85/189 (44%), Gaps = 17/189 (8%)

Query: 76  EIFHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           E+  KM+  G   N ++ F AL    S+DG    A+ L+ ++   G +P  V + A+I  
Sbjct: 328 ELLGKMKKRGCVPN-IQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQ 386

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM---EM 188
               G+ + A  +F  ML+ G  P+  TY  +IK           ++GD QK ++   +M
Sbjct: 387 LCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFC--------LMGDIQKAMVIFDKM 438

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID-KRGQGF 247
           +  G  PN  TY  +   + +   ++ A  LL+ MK  G  PD     E +    RG   
Sbjct: 439 LKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKL 498

Query: 248 RGVINILFG 256
               ++ +G
Sbjct: 499 EHATSLFYG 507



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 48/160 (30%), Positives = 74/160 (46%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           ++++ KM   G+  + +    M + L K G   EA  + + I      P+   +T++I  
Sbjct: 187 RDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILG 246

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +        A  +F RM+  G  PN+ TY+ LI GL +        L +A   L EMV K
Sbjct: 247 HCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGR-----LEEAMDMLEEMVQK 301

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G+ P   TYT    +   A    EA  LL +MK +G VP+
Sbjct: 302 GIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPN 341



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/168 (26%), Positives = 81/168 (48%), Gaps = 13/168 (7%)

Query: 80  KMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           KM  +GL  N +      D L ++G T  A ++F +++ + + P++  ++++I      G
Sbjct: 577 KMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEG 636

Query: 137 QGKEA--LRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
           + ++A    +  R+   G  PN  TY  L+KGL     G  +   +A + ++ M  KG++
Sbjct: 637 RAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLC----GEGRCY-EADQLVVSMQKKGLQ 691

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF---VPDEKAVKEAL 239
           P+   Y A+     +  KV+ A  +   M   GF   + D KA+  AL
Sbjct: 692 PSEEIYRALLIGECKNLKVESALNIFYSMDTLGFQLHLSDYKALICAL 739



 Score = 61.2 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 42/166 (25%), Positives = 74/166 (44%), Gaps = 8/166 (4%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M  +G   N+V    + + L  +G   EA+ +  ++  KG  P V  +T  + +  
Sbjct: 259 MFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLC 318

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG   EA+ +  +M   G  PN  T+  LI GL  + DG  +I   A     +M+  G+
Sbjct: 319 DAGCSSEAVELLGKMKKRGCVPNIQTFTALISGL--SRDGKFEI---AIGLYHKMLADGL 373

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
            P   TY A+        + + A  + + M + G +P  +   E +
Sbjct: 374 VPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEII 419



 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%)

Query: 97  LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
           L K  +   A  ++ ++ + G  P ++    +I      G+ +EA  +   +      PN
Sbjct: 177 LGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMSHIFRYDAYPN 236

Query: 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
           A+TY  LI G     +     L  A      MV  G  PN+ TY+ +        +++EA
Sbjct: 237 AFTYTSLILGHCRNHN-----LDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEA 291

Query: 217 RGLLQQMKAKGFVP 230
             +L++M  KG  P
Sbjct: 292 MDMLEEMVQKGIEP 305


>gi|297848576|ref|XP_002892169.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338011|gb|EFH68428.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 662

 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 75/146 (51%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+G  +E   +F  +  KG  P+V  +T +I+ YA  G  ++A+R+  RM+  G  P
Sbjct: 336 GLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKTGSVEDAIRLLHRMIDEGFNP 395

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY+V++ GL      N ++  +A  Y       G+  N+  Y+++ +   +A +VDE
Sbjct: 396 DVVTYSVVVNGLCK----NGRV-EEAMDYFQTCRFNGLAINSMFYSSLIDGLGKAGRVDE 450

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      ALID
Sbjct: 451 AERLFEEMSEKGCTRDSYCYN-ALID 475



 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 42/132 (31%), Positives = 72/132 (54%), Gaps = 5/132 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ D+G  PDVV ++ V+      G+ +EA+  F     +G
Sbjct: 368 LIDGYAKTGSVEDAIRLLHRMIDEGFNPDVVTYSVVVNGLCKNGRVEEAMDYFQTCRFNG 427

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +A N+  Y+ LI GL     G A  + +A++   EM  KG   ++  Y A+ +AF +  K
Sbjct: 428 LAINSMFYSSLIDGL-----GKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHGK 482

Query: 213 VDEARGLLQQMK 224
           VDEA  L ++M+
Sbjct: 483 VDEALALFKRME 494



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 77/170 (45%), Gaps = 11/170 (6%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           + F   R  GL  N++    + D L K G   EA +LF ++ +KG   D   + A+I+A+
Sbjct: 418 DYFQTCRFNGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAF 477

Query: 133 ASAGQGKEALRVFMRMLAS-GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              G+  EAL +F RM    G     YTY +LI G+            +A K    M+ K
Sbjct: 478 TKHGKVDEALALFKRMEEEEGCDQTVYTYTILISGMFKEHRNE-----EALKLWDMMIDK 532

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           G+ P A    A+      + KV  A  +L ++   G + D  A  E +I+
Sbjct: 533 GITPTAACLRALSTGLCLSGKVARACKILDELAPMGVILD--AACEDMIN 580



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 70/171 (40%), Gaps = 9/171 (5%)

Query: 81  MRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ 137
           M T+GL  + +    M  A   D      + L+ ++ +KG      A + VI      G+
Sbjct: 283 METKGLEADKITYMTMIQACYADSDFSSCVALYQEMDEKGLQVPPHAFSLVIGGLCKEGK 342

Query: 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA 197
             E   VF  M+  G  PN   Y VLI G A         + DA + L  M+ +G  P+ 
Sbjct: 343 LNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKTGS-----VEDAIRLLHRMIDEGFNPDV 397

Query: 198 GTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFR 248
            TY+ V     +  +V+EA    Q  +  G   +      +LID  G+  R
Sbjct: 398 VTYSVVVNGLCKNGRVEEAMDYFQTCRFNGLAIN-SMFYSSLIDGLGKAGR 447



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/207 (25%), Positives = 96/207 (46%), Gaps = 20/207 (9%)

Query: 34  SLSSSSDQPTKKYVNTKSKLPPPYDPFKKVVDEEPTDPRNLQEIFHKMRTEG-LTNNA-- 90
           S+ S+ D   +K++    KL P +  F    DE    P      F   R +   T+N   
Sbjct: 98  SMESNLDGFCRKFL---IKLSPNFVSFVLKSDEIREKPDIAWSFFCWSRKQKKYTHNLEC 154

Query: 91  -VKMFD--ALSKDGLTHEALQLFAQIKDKGHMPDVVA-HTAVIEAYASAGQGKEALRVFM 146
            V + D  AL+KD    + ++       K   P  V+   ++I+++   G  +E L V+ 
Sbjct: 155 YVSLVDVLALAKD---VDRIRFICSEIRKFEFPMTVSPGNSLIKSFGKLGMVEELLWVWR 211

Query: 147 RMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG-MRPNAGTYTAVFE 205
           +M  +G+ P  YTY  L+ GL +A      +  D+ + + E++  G ++P+  TY  + +
Sbjct: 212 KMKENGIEPTLYTYNFLMNGLVSA------MFVDSAERVFEVMESGRIKPDVVTYNTMIK 265

Query: 206 AFVRAQKVDEARGLLQQMKAKGFVPDE 232
            + +A +  +A   L+ M+ KG   D+
Sbjct: 266 GYCKAGQTQKALEKLRVMETKGLEADK 292



 Score = 50.1 bits (118), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 63/147 (42%), Gaps = 15/147 (10%)

Query: 88  NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMR 147
           N+ +K F  L   G+  E L ++ ++K+ G  P +  +  ++    SA     A RVF  
Sbjct: 191 NSLIKSFGKL---GMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEV 247

Query: 148 MLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME---MVGKGMRPNAGTYTAVF 204
           M +  + P+  TY  +IKG   A        G  QK L +   M  KG+  +  TY  + 
Sbjct: 248 MESGRIKPDVVTYNTMIKGYCKA--------GQTQKALEKLRVMETKGLEADKITYMTMI 299

Query: 205 EAFVRAQKVDEARGLLQQMKAKGF-VP 230
           +A            L Q+M  KG  VP
Sbjct: 300 QACYADSDFSSCVALYQEMDEKGLQVP 326



 Score = 46.6 bits (109), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 71/157 (45%), Gaps = 10/157 (6%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDK-GHMPDVVAHTAVIE 130
           + +F +M  +G T ++     + DA +K G   EAL LF +++++ G    V  +T +I 
Sbjct: 452 ERLFEEMSEKGCTRDSYCYNALIDAFTKHGKVDEALALFKRMEEEEGCDQTVYTYTILIS 511

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
                 + +EAL+++  M+  G+ P A     L  GL  +       +  A K L E+  
Sbjct: 512 GMFKEHRNEEALKLWDMMIDKGITPTAACLRALSTGLCLSGK-----VARACKILDELAP 566

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
            G+  +A     +     +A ++ EA  L   +  +G
Sbjct: 567 MGVILDAACEDMI-NTLCKAGRIKEACKLADGITERG 602


>gi|297842227|ref|XP_002888995.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297334836|gb|EFH65254.1| hypothetical protein ARALYDRAFT_476621 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 863

 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 81/164 (49%), Gaps = 9/164 (5%)

Query: 86  LTNNAVKMFDALSKDGLTHEAL-QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRV 144
           LT N V   +A ++ GL  E L  LFA+++ +G  PD+V +  ++ A A  G G EA  V
Sbjct: 212 LTYNTV--INACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRGLGDEAEMV 269

Query: 145 FMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVF 204
           F  M   G+ P+  TY+ L++       G  + L      L EM   G  P+  +Y  + 
Sbjct: 270 FRTMNDGGIVPDLTTYSHLVETF-----GKLRRLEKVSDLLSEMASGGSLPDITSYNVLL 324

Query: 205 EAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFR 248
           EA+ ++  + EA G+  QM+A G  P+       L++  GQ  R
Sbjct: 325 EAYAKSGSIKEAMGVFHQMQAAGCTPNANTYS-VLLNLFGQSGR 367



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 68/138 (49%), Gaps = 6/138 (4%)

Query: 109 LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
           L +++   G +PD+ ++  ++EAYA +G  KEA+ VF +M A+G  PNA TY+VL+    
Sbjct: 304 LLSEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLF- 362

Query: 169 AAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
               G +    D ++  +EM      P+A TY  + E F       E   L   M  +  
Sbjct: 363 ----GQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDMVEENI 418

Query: 229 VPDEKAVKEALIDKRGQG 246
            PD +   E +I   G+G
Sbjct: 419 EPDMETY-EGIIFACGKG 435



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 74/153 (48%), Gaps = 6/153 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +A +K G   EA+ +F Q++  G  P+   ++ ++  +  +G+  +  ++F+ M +S 
Sbjct: 323 LLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSN 382

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+A TY +LI+       G      +      +MV + + P+  TY  +  A  +   
Sbjct: 383 TDPDAATYNILIEVF-----GEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGL 437

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
            ++AR +LQ M A   VP  KA    +I+  GQ
Sbjct: 438 HEDARKILQYMTANDIVPSSKAYT-GVIEAFGQ 469



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 4/139 (2%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M   L ++GL  + L++F ++  +G    V ++TA+I AY   G+ + +L +  RM    
Sbjct: 147 MISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNDK 206

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           ++P+  TY  +I   A        +LG       EM  +G++P+  TY  +  A      
Sbjct: 207 ISPSILTYNTVINACARGGLDWEGLLG----LFAEMRHEGIQPDIVTYNTLLSACAIRGL 262

Query: 213 VDEARGLLQQMKAKGFVPD 231
            DEA  + + M   G VPD
Sbjct: 263 GDEAEMVFRTMNDGGIVPD 281



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 73/166 (43%), Gaps = 8/166 (4%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +FH M  E +  +      +  A  K GL  +A ++   +     +P   A+T VIEA+ 
Sbjct: 409 LFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFG 468

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            A   +EAL  F  M   G  P+  TY  L+   A        ++ +++  L  +V  G+
Sbjct: 469 QAALYEEALVAFNTMHEVGSNPSIETYHSLLYSFARGG-----LVKESEAILSRLVDSGI 523

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
             N  T+ A  EA+ +  K +EA      M+     PDE+ ++  L
Sbjct: 524 PRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVL 569



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 5/138 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +A  +  L  EAL  F  + + G  P +  + +++ ++A  G  KE+  +  R++ SG
Sbjct: 463 VIEAFGQAALYEEALVAFNTMHEVGSNPSIETYHSLLYSFARGGLVKESEAILSRLVDSG 522

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +  N  T+   I+              +A K  ++M      P+  T  AV   +  A+ 
Sbjct: 523 IPRNRDTFNAQIEAYKQGGK-----FEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFARL 577

Query: 213 VDEARGLLQQMKAKGFVP 230
           VDE R   ++MKA   +P
Sbjct: 578 VDECREQFEEMKASDILP 595


>gi|226528493|ref|NP_001147073.1| ATP binding protein [Zea mays]
 gi|195607078|gb|ACG25369.1| ATP binding protein [Zea mays]
          Length = 655

 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 69/139 (49%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   ++GL    ++L  Q+   G MPDV+ +T VI  +   G   EA+ +   M A G
Sbjct: 373 LVDFFCQNGLVDRVIELLEQMLVHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACG 432

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN  +Y +++KGL +     A+   DA+  + +M+ +G   N  T+  +     +   
Sbjct: 433 CKPNTISYTIVLKGLCS-----AERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGL 487

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V++A  LL+QM   G  PD
Sbjct: 488 VEQAIELLKQMLVNGCSPD 506



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 78/180 (43%), Gaps = 16/180 (8%)

Query: 74  LQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           +QE+  +M       N V    +   L ++GL     ++ AQ+ + G  PD+  +  +I+
Sbjct: 246 VQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMAEHGCTPDIRMYATIID 305

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
                G  K A  +  RM + G+ PN   Y  L+KGL +A         + ++ L EM  
Sbjct: 306 GICKEGHLKVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWE-----ETEELLAEMFD 360

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD--------EKAVKEALIDK 242
           K    +  T+  + + F +   VD    LL+QM   G +PD            KE LID+
Sbjct: 361 KDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLVHGCMPDVITYTTVINGFCKEGLIDE 420



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 67/120 (55%), Gaps = 8/120 (6%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+ + M  +G++ N +    +  ALS++G  ++ +Q+F  I+D     D V + AVI + 
Sbjct: 528 ELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSL 587

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+ + A+     M++SG  PN  TY +LI+GL  A++G  K   +AQ+ L E+  KG
Sbjct: 588 CKRGETERAIEFLAYMVSSGCVPNESTYTILIRGL--ASEGFVK---EAQEMLTELCSKG 642



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 80/176 (45%), Gaps = 8/176 (4%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +++  +M  +G   N +    + + L K GL  +A++L  Q+   G  PD+++++ VI+ 
Sbjct: 457 EDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDG 516

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              AG+  EAL +   M+  G++PN   Y+ +   L+     N  I     +    +   
Sbjct: 517 LGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVI-----QMFDNIQDT 571

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGF 247
            +R +A  Y AV  +  +  + + A   L  M + G VP+E      +     +GF
Sbjct: 572 TIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGF 627



 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 71/188 (37%), Gaps = 41/188 (21%)

Query: 89  NAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASA---GQGKEALRVF 145
           N   + +A+   G   +AL L   +   G  PDVV++ AV++    A   G  +E +   
Sbjct: 194 NCNLVLNAICDQGSVDKALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEM 253

Query: 146 MRMLA--------------------------------SGVAPNAYTYAVLIKGLAAAADG 173
           +RM                                   G  P+   YA +I G+    +G
Sbjct: 254 VRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMAEHGCTPDIRMYATIIDGI--CKEG 311

Query: 174 NAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK 233
           + K+   A + L  M   G++PN   Y  + +    A++ +E   LL +M  K   P + 
Sbjct: 312 HLKV---AHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKD-CPLDD 367

Query: 234 AVKEALID 241
                L+D
Sbjct: 368 VTFNILVD 375



 Score = 45.1 bits (105), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 48/107 (44%), Gaps = 8/107 (7%)

Query: 125 HTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKY 184
           + A++  Y  AGQ + A R+     A  V PNAYTY  +++ L A        + DA   
Sbjct: 93  YNAMVAGYCRAGQLESARRL---AAAVPVPPNAYTYFPVVRALCARGR-----IADALAV 144

Query: 185 LMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           L EM  +G  P    Y  + EA  R      A  +L+ + A+G   D
Sbjct: 145 LDEMPRRGCAPIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALD 191



 Score = 38.1 bits (87), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 5/112 (4%)

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
           P+   +  V+ A  + G+  +AL V   M   G AP    Y V+++  AA   G  +   
Sbjct: 120 PNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILE--AACRGGGFR--- 174

Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            A + L ++  +G   + G    V  A      VD+A  LL+ + + G  PD
Sbjct: 175 SAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDKALHLLRDLPSFGCEPD 226


>gi|168026089|ref|XP_001765565.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683203|gb|EDQ69615.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 505

 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 70/153 (45%), Gaps = 6/153 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M     K G     L ++ Q+     +PD      +I++ A A Q +EA  VF  M    
Sbjct: 71  MIQVFMKGGDVQNGLLMYKQMLKAKFVPDHTTFNILIDSLAKADQVEEACNVFGDMFKLN 130

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V+P+ YTY +LI+ L      +A       K    M  +G +PN  TY +V  AF  A +
Sbjct: 131 VSPDVYTYTILIRSLGTIGRIDA-----VMKLFESMTAQGCQPNLFTYHSVMHAFGSAGR 185

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
           VDEA  + QQM  KG  PD       LID  G+
Sbjct: 186 VDEACDIFQQMVQKGLQPD-AVTYNILIDAFGK 217



 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 83/168 (49%), Gaps = 8/168 (4%)

Query: 74  LQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           L+ + + ++ + +T N V   D LSK G    A +LF  +K KG   D V +  +I    
Sbjct: 296 LEMVDNDIKYDIVTINNV--LDCLSKAGRVEAAFELFQDMKFKGLNADTVTYNILINGLG 353

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG+   A  + + M  +G APN  TY  LI     ++ G    L  A +  +EM  +G+
Sbjct: 354 RAGKLDAAGALLLEMEENGCAPNIITYNTLI-----SSYGKWSNLSAATRLFLEMKERGV 408

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
            PN  +Y+++ E F +A + D A  L ++MKA+G  P        LID
Sbjct: 409 APNVVSYSSLIEGFGKAGRTDAAISLFREMKAEG-CPPNHVTYNLLID 455



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 74/155 (47%), Gaps = 8/155 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F  M+ +GL  + V    + + L + G    A  L  ++++ G  P+++ +  +I +Y
Sbjct: 328 ELFQDMKFKGLNADTVTYNILINGLGRAGKLDAAGALLLEMEENGCAPNIITYNTLISSY 387

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
                   A R+F+ M   GVAPN  +Y+ LI+G   A   +A I         EM  +G
Sbjct: 388 GKWSNLSAATRLFLEMKERGVAPNVVSYSSLIEGFGKAGRTDAAI-----SLFREMKAEG 442

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
             PN  TY  + +  +RA +   A   L++M+  G
Sbjct: 443 CPPNHVTYNLLIDCLIRAGRFGAAMEYLREMRDAG 477



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 82/189 (43%), Gaps = 15/189 (7%)

Query: 50  KSKLPPPYDPFKKVVD-----EEPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTH 104
           K+K  P +  F  ++D     ++  +  N+     K+           +  +L   G   
Sbjct: 93  KAKFVPDHTTFNILIDSLAKADQVEEACNVFGDMFKLNVSPDVYTYTILIRSLGTIGRID 152

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
             ++LF  +  +G  P++  + +V+ A+ SAG+  EA  +F +M+  G+ P+A TY +LI
Sbjct: 153 AVMKLFESMTAQGCQPNLFTYHSVMHAFGSAGRVDEACDIFQQMVQKGLQPDAVTYNILI 212

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMR-PNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
                         G  ++   + VGK     N  TY ++  +  R   +     L  QM
Sbjct: 213 DAFGKT--------GQLERAF-DFVGKSRSFTNEVTYNSLLSSLGRKGDIQGLMELFGQM 263

Query: 224 KAKGFVPDE 232
           KAKG V +E
Sbjct: 264 KAKGLVSNE 272



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 61/117 (52%), Gaps = 7/117 (5%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A +LF ++K++G  P+VV+++++IE +  AG+   A+ +F  M A G  PN  TY +LI 
Sbjct: 396 ATRLFLEMKERGVAPNVVSYSSLIEGFGKAGRTDAAISLFREMKAEGCPPNHVTYNLLID 455

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
            L  A        G A +YL EM   G +   G  T      +  Q ++EA+   Q+
Sbjct: 456 CLIRAGR-----FGAAMEYLREMRDAGCQ--MGKVTKSLLVRIPPQYMEEAQSFFQE 505



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 77/193 (39%), Gaps = 40/193 (20%)

Query: 74  LQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           + ++F  M  +G   N      +  A    G   EA  +F Q+  KG  PD V +  +I+
Sbjct: 154 VMKLFESMTAQGCQPNLFTYHSVMHAFGSAGRVDEACDIFQQMVQKGLQPDAVTYNILID 213

Query: 131 AYASAGQGKEA--------------------------------LRVFMRMLASGVAPNAY 158
           A+   GQ + A                                + +F +M A G+  N  
Sbjct: 214 AFGKTGQLERAFDFVGKSRSFTNEVTYNSLLSSLGRKGDIQGLMELFGQMKAKGLVSNEL 273

Query: 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218
           TYA+LI+ L     G A  + D  +  +EMV   ++ +  T   V +   +A +V+ A  
Sbjct: 274 TYAILIERL-----GWAGRVEDVWQLYLEMVDNDIKYDIVTINNVLDCLSKAGRVEAAFE 328

Query: 219 LLQQMKAKGFVPD 231
           L Q MK KG   D
Sbjct: 329 LFQDMKFKGLNAD 341


>gi|452819918|gb|EME26968.1| mitochondrial protein translocase, MPT family [Galdieria
           sulphuraria]
          Length = 466

 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 86/180 (47%), Gaps = 18/180 (10%)

Query: 53  LPPPYDPFKKVVDEEPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQ 112
           +PP YD          +     Q++ H M+   +  NA  M D  S+     +AL+L+ +
Sbjct: 226 VPPQYD----------SAWVTFQQLKHFMKPNKVVYNA--MIDICSRTDRMEQALKLYQE 273

Query: 113 IK-DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA 171
           +K + G  PD   + A+++ YA AG  + A+ V  +M + G+ P A TY+VLI  L    
Sbjct: 274 LKLENGETPDEYTYNAILKGYARAGNLQSAIEVSNQMHSEGIIPRAITYSVLIDSL---- 329

Query: 172 DGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            G  K L +A  +  EM  KG++PN  T+  +  A   +     A  ++  M+ +G   D
Sbjct: 330 -GKCKRLDEAFGFFEEMEAKGIQPNVITFNVLLSACAASNNYTRALVIVDWMEERGVAFD 388



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 69/140 (49%), Gaps = 11/140 (7%)

Query: 73  NLQ---EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           NLQ   E+ ++M +EG+   A+    + D+L K     EA   F +++ KG  P+V+   
Sbjct: 299 NLQSAIEVSNQMHSEGIIPRAITYSVLIDSLGKCKRLDEAFGFFEEMEAKGIQPNVITFN 358

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
            ++ A A++     AL +   M   GVA + YTY  L++     A  N+K   +  K+  
Sbjct: 359 VLLSACAASNNYTRALVIVDWMEERGVAFDRYTYNALMQ-----ASVNSKQYEETVKWYE 413

Query: 187 EMVGKGMRPNAGTYTAVFEA 206
           +M+   + PN  T+  + EA
Sbjct: 414 KMIHSLVTPNNVTFRYLVEA 433


>gi|302784788|ref|XP_002974166.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
 gi|300158498|gb|EFJ25121.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
          Length = 647

 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 101/223 (45%), Gaps = 20/223 (8%)

Query: 21  RITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKKVVDEEPTDPRNLQEIFHK 80
           ++ +TRV   L   L  +        +  +    P    F  V++    + R L E F  
Sbjct: 5   KLVDTRVCTALLNGLCKTGQLDRAMLLLDEMPCSPDMVAFTVVINGLCREKR-LDEAFSV 63

Query: 81  MRT--------EGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +          + +T N     D L K     +A QL  ++ +K  +P  V +TA+++  
Sbjct: 64  LERAVRAGCEPDYVTYNV--FIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGL 121

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             AG+  EA+ +  +M+  G +P   TY V+I GL+ A       + +A++  ++M+G G
Sbjct: 122 LKAGRLDEAMAILEQMVEKGNSPTLKTYTVVIDGLSKAGR-----VEEARRIFVDMLGNG 176

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQM----KAKGFVPD 231
            RP+A  YTA+     +  K+DEA   L QM     A+G  PD
Sbjct: 177 CRPDAFVYTALISGLAKIGKLDEALVYLNQMVENGCARGVEPD 219



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 72/157 (45%), Gaps = 7/157 (4%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F  M   G     V    + D    +G    A++LF ++ D+G  P++V++  +I     
Sbjct: 417 FLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCR 476

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
           AG+  +A   F ++L   + P+ YT+   + GL    D     +GD  +    MV +G  
Sbjct: 477 AGKLAKAYFYFEKLLQRRLCPDVYTFNSFLHGLCQRLD----TVGDGVELFESMVSQGTS 532

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           PN  +Y+ + +   RA  ++    +  +M ++G  PD
Sbjct: 533 PNLHSYSILMDGICRAGGLEVTLEIFHEMVSRGVAPD 569



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 83/184 (45%), Gaps = 14/184 (7%)

Query: 49  TKSKLPPPYDPFKKVVD-----EEPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLT 103
            ++   P Y  +   +D     E   D   L +   + +    T     + D L K G  
Sbjct: 68  VRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRL 127

Query: 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
            EA+ +  Q+ +KG+ P +  +T VI+  + AG+ +EA R+F+ ML +G  P+A+ Y  L
Sbjct: 128 DEAMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTAL 187

Query: 164 IKGLAAAADGNAKILGDAQKYLMEMV----GKGMRPNAGTYTAVFEAFVRAQKVDEARGL 219
           I GLA         L +A  YL +MV     +G+ P+   +  V      +  +++A   
Sbjct: 188 ISGLAKIGK-----LDEALVYLNQMVENGCARGVEPDVVIHNLVIRQLCASGNLEDALAY 242

Query: 220 LQQM 223
             ++
Sbjct: 243 FDEL 246



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 69/147 (46%), Gaps = 8/147 (5%)

Query: 87  TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFM 146
           T     + + L K G    A+ L  ++      PD+VA T VI       +  EA  V  
Sbjct: 9   TRVCTALLNGLCKTGQLDRAMLLLDEMPCS---PDMVAFTVVINGLCREKRLDEAFSVLE 65

Query: 147 RMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEA 206
           R + +G  P+  TY V I GL       A+ + DA + L +M  K   P   TYTA+ + 
Sbjct: 66  RAVRAGCEPDYVTYNVFIDGLC-----KAERVDDAFQLLKKMDEKKCLPTTVTYTALVDG 120

Query: 207 FVRAQKVDEARGLLQQMKAKGFVPDEK 233
            ++A ++DEA  +L+QM  KG  P  K
Sbjct: 121 LLKAGRLDEAMAILEQMVEKGNSPTLK 147



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 68/139 (48%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K G   E  + F +++++G+ PD V + A+I+ +  A    +A RV+ +ML SG
Sbjct: 330 IIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSG 389

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
              +  TY +++ GL  A       + +A    + M  +G      TY+A+ + F     
Sbjct: 390 TVVSTVTYNIILDGLCKAGR-----VAEAYATFLAMEERGCVATVVTYSALMDGFCSEGN 444

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V  A  L ++M  +G  P+
Sbjct: 445 VSAAVELFRRMLDRGCEPN 463



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 5/137 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   K G   EAL    +  ++G +PD V +T++I+     G+ +E    F  M   G
Sbjct: 295 LVDGFLKLGRLDEALLQLKEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRG 354

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+A TYA LI G        AK++  A +   +M+  G   +  TY  + +   +A +
Sbjct: 355 YEPDAVTYAALIDGFM-----KAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGR 409

Query: 213 VDEARGLLQQMKAKGFV 229
           V EA      M+ +G V
Sbjct: 410 VAEAYATFLAMEERGCV 426



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 67/134 (50%), Gaps = 5/134 (3%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
           AL K   T EA+    ++ ++   P +  +T++++ +   G+  EAL      +  G  P
Sbjct: 263 ALCKAERTEEAIAFVKKMSERRCFPTLFTYTSLVDGFLKLGRLDEALLQLKEAVERGFIP 322

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +A TY  +I GL        ++    +++  EM  +G  P+A TY A+ + F++A+ + +
Sbjct: 323 DAVTYTSIIDGLCKL----GRVEEGCERF-HEMRNRGYEPDAVTYAALIDGFMKAKMIPK 377

Query: 216 ARGLLQQMKAKGFV 229
           A  + +QM   G V
Sbjct: 378 AHRVYRQMLQSGTV 391



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 67/126 (53%), Gaps = 6/126 (4%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           + ++LF  +  +G  P++ +++ +++    AG  +  L +F  M++ GVAP+   +  LI
Sbjct: 518 DGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVTLEIFHEMVSRGVAPDVVVFNTLI 577

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           + L  A       + +A +   E+  +   P+A +Y ++ +A  R ++++EAR L   MK
Sbjct: 578 RWLCIAGR-----VDEALEVFRELERRSA-PDAWSYWSLLDALSRCERMEEARLLSFHMK 631

Query: 225 AKGFVP 230
            +G  P
Sbjct: 632 LQGCAP 637



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 81/204 (39%), Gaps = 39/204 (19%)

Query: 75  QEIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHM----PDVVAHTA 127
           + IF  M   G   +A     +   L+K G   EAL    Q+ + G      PDVV H  
Sbjct: 166 RRIFVDMLGNGCRPDAFVYTALISGLAKIGKLDEALVYLNQMVENGCARGVEPDVVIHNL 225

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAA----------------- 170
           VI    ++G  ++AL  F   L   +    +T+  L+  L  A                 
Sbjct: 226 VIRQLCASGNLEDALAYFDE-LDDSLDLTHFTFNPLVAALCKAERTEEAIAFVKKMSERR 284

Query: 171 -----------ADGNAKI--LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
                       DG  K+  L +A   L E V +G  P+A TYT++ +   +  +V+E  
Sbjct: 285 CFPTLFTYTSLVDGFLKLGRLDEALLQLKEAVERGFIPDAVTYTSIIDGLCKLGRVEEGC 344

Query: 218 GLLQQMKAKGFVPDEKAVKEALID 241
               +M+ +G+ PD      ALID
Sbjct: 345 ERFHEMRNRGYEPD-AVTYAALID 367



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 4/96 (4%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F  M ++G + N      + D + + G     L++F ++  +G  PDVV    +I   
Sbjct: 521 ELFESMVSQGTSPNLHSYSILMDGICRAGGLEVTLEIFHEMVSRGVAPDVVVFNTLIRWL 580

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
             AG+  EAL VF R L    AP+A++Y  L+  L+
Sbjct: 581 CIAGRVDEALEVF-RELERRSAPDAWSYWSLLDALS 615


>gi|38567720|emb|CAE76009.1| B1358B12.18 [Oryza sativa Japonica Group]
 gi|90265197|emb|CAH67636.1| B0812A04.6 [Oryza sativa Indica Group]
          Length = 609

 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 82/160 (51%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           Q +F +M++ G+    V    M   + + G    A  L  ++ + G  PDV  + A+I+ 
Sbjct: 260 QNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQG 319

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G+ ++A  VF +M   G+ PNA  + +LI   A    G+A+ + +  +   EM  +
Sbjct: 320 LCRVGRIEDARGVFEKMCGRGMKPNAVVFTILID--AHCKKGDAETMLELHR---EMRER 374

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G+RP+A TY A+     RA+ +  A G++ +M++ G  PD
Sbjct: 375 GVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPD 414



 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 79/164 (48%), Gaps = 8/164 (4%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D   + E+  +MR  G+  +AV    + + L +      A  +  +++  G  PD V +T
Sbjct: 360 DAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYT 419

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
            +I+ Y    +   A+ +   M+A GV  +  TY  LI GL+ A         DA++ L 
Sbjct: 420 TLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRS-----ADAERVLG 474

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           EM+  G+ P+  TYT V +AF R   V     LL++M+ KG  P
Sbjct: 475 EMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKP 518



 Score = 73.9 bits (180), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 9/161 (5%)

Query: 76  EIFHKMRTE-GLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           E  H+  +E G+T +      +   L + G   +A  +F ++  +G  P+ V  T +I+A
Sbjct: 295 ETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDA 354

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +   G  +  L +   M   GV P+A TY  ++ GL  A D     L  A   ++EM   
Sbjct: 355 HCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARD-----LKSASGIVVEMRSA 409

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           G+RP+  TYT + + + + +++D A  + Q M A+G   DE
Sbjct: 410 GLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDE 450



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 70/144 (48%), Gaps = 9/144 (6%)

Query: 92  KMFDALSKD----GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMR 147
           K+F+ L +D    G    A  +F +++ +G    VV+   +I     AG    A  +  R
Sbjct: 241 KLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETLHRR 300

Query: 148 MLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAF 207
           M  +GV P+ YTY  LI+GL          + DA+    +M G+GM+PNA  +T + +A 
Sbjct: 301 MSEAGVTPDVYTYGALIQGLCRVGR-----IEDARGVFEKMCGRGMKPNAVVFTILIDAH 355

Query: 208 VRAQKVDEARGLLQQMKAKGFVPD 231
            +    +    L ++M+ +G  PD
Sbjct: 356 CKKGDAETMLELHREMRERGVRPD 379



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 8/166 (4%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D ++   I  +MR+ GL  + V    + D   K+     A+++   +  +G   D V +T
Sbjct: 395 DLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYT 454

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
           A+I   + AG+  +A RV   M+ +G+ P+  TY ++I       D    +     + L 
Sbjct: 455 ALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGL-----RLLK 509

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           EM  KG +P   TY  +   F +  ++  A  LL  M   G  PD+
Sbjct: 510 EMQNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDD 555



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 74/160 (46%), Gaps = 13/160 (8%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           EI   M  EG+  + V    +   LSK G + +A ++  ++ + G  PD   +T VI+A+
Sbjct: 436 EIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDAF 495

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G  K  LR+   M   G  P   TY V++ G           + +A   L  M+  G
Sbjct: 496 CRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQ-----MKNADMLLNAMINIG 550

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK-AKGFVPD 231
           + P+  TY  + +   +  KV +    ++++K AKG VPD
Sbjct: 551 VSPDDITYNILLDGHCKHGKVTD----IEELKSAKGTVPD 586



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 8/117 (6%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DA  + G     L+L  ++++KG  P VV +  ++  +   GQ K A  +   M+  G
Sbjct: 491 VIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNAMINIG 550

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
           V+P+  TY +L+       DG+ K  G           KG  P+ G YT++    V+
Sbjct: 551 VSPDDITYNILL-------DGHCK-HGKVTDIEELKSAKGTVPDLGVYTSIVGEIVK 599


>gi|414884149|tpg|DAA60163.1| TPA: hypothetical protein ZEAMMB73_830458 [Zea mays]
          Length = 378

 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 92/204 (45%), Gaps = 13/204 (6%)

Query: 53  LPPPYDPFKKVVDEEPTDPRNLQE---IFHKMRTEGLTNNAV---KMFDALSKDGLTHEA 106
           +PP    +  ++D      R L E   +F + +++G+  N +    + D   K G   EA
Sbjct: 125 VPPTVATYGSIIDGLAKIDR-LDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEA 183

Query: 107 LQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKG 166
             +  ++  KG  P+V    ++++A   A +  EAL  F  M     +PN YTY++LI G
Sbjct: 184 YLILEEMMKKGLAPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILING 243

Query: 167 LAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK 226
           L      N   +     +  EM  +G+ PN  TYT +     +   + +A  L ++ KA 
Sbjct: 244 LCRVQKYNKAFV-----FWQEMQKQGLVPNVVTYTTMISGLAKVGNITDACSLFERFKAN 298

Query: 227 GFVPDEKAVKEALIDKRGQGFRGV 250
           G +PD  +   ALI+      R +
Sbjct: 299 GGIPDAASFN-ALIEGMSHANRAI 321



 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 79/174 (45%), Gaps = 9/174 (5%)

Query: 75  QEIFHKMRTEGLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            +IF +M   G   +   +    D + K G   +   +F  IK  G +PDV +++ +I  
Sbjct: 9   HKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHG 68

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              AGQ +E   +F  M   G A +A  Y  ++ G   +       +  A + L EM  K
Sbjct: 69  LTKAGQARETSSIFHAMKQRGFALDARAYNAVVDGFCKSGK-----VDKAYEALEEMKVK 123

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
            + P   TY ++ +   +  ++DEA  L ++ K+KG +     V  +LID  G+
Sbjct: 124 HVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKG-IELNVIVYSSLIDGFGK 176



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 9/141 (6%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L+K G   E   +F  +K +G   D  A+ AV++ +  +G+  +A      M    
Sbjct: 65  LIHGLTKAGQARETSSIFHAMKQRGFALDARAYNAVVDGFCKSGKVDKAYEALEEMKVKH 124

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKI--LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
           V P   TY  +I GL       AKI  L +A     E   KG+  N   Y+++ + F + 
Sbjct: 125 VPPTVATYGSIIDGL-------AKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKV 177

Query: 211 QKVDEARGLLQQMKAKGFVPD 231
            ++DEA  +L++M  KG  P+
Sbjct: 178 GRIDEAYLILEEMMKKGLAPN 198



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 68/162 (41%), Gaps = 8/162 (4%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           I  +M  +GL  N      + DAL K    +EAL  F  +K+    P+   ++ +I    
Sbjct: 186 ILEEMMKKGLAPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILINGLC 245

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
              +  +A   +  M   G+ PN  TY  +I GLA   +     + DA          G 
Sbjct: 246 RVQKYNKAFVFWQEMQKQGLVPNVVTYTTMISGLAKVGN-----ITDACSLFERFKANGG 300

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAV 235
            P+A ++ A+ E    A +  EA  + ++ + +G   + KA 
Sbjct: 301 IPDAASFNALIEGMSHANRAIEAYHVFEETRLRGCRINVKAC 342



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 64/124 (51%), Gaps = 5/124 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L +    ++A   + +++ +G +P+VV +T +I   A  G   +A  +F R  A+G
Sbjct: 240 LINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMISGLAKVGNITDACSLFERFKANG 299

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+A ++  LI+G++ A   N  I  +A     E   +G R N     ++ +A  +A+ 
Sbjct: 300 GIPDAASFNALIEGMSHA---NRAI--EAYHVFEETRLRGCRINVKACISLLDALNKAEC 354

Query: 213 VDEA 216
           +++A
Sbjct: 355 IEQA 358


>gi|302822703|ref|XP_002993008.1| hypothetical protein SELMODRAFT_136281 [Selaginella moellendorffii]
 gi|300139208|gb|EFJ05954.1| hypothetical protein SELMODRAFT_136281 [Selaginella moellendorffii]
          Length = 431

 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 76/159 (47%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           EIF +M+  G+  N V    M D   K G    A Q   +++ +G  P+ +    +I   
Sbjct: 210 EIFERMKKSGVAVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARGIKPNSITFNTLINCL 269

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             A    EA +V   M ++G+ P+ +TY  +I+  A A  GN   +G A +   +M   G
Sbjct: 270 GRAKYASEAYKVLQEMRSAGLTPDVFTYTCMIEAFAKA--GN---MGKAFEMFGDMEKAG 324

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              N  TY  + +A V+A +  +AR +   MK KG +PD
Sbjct: 325 CSANVVTYNLLIDALVKAGRYQDARDIYFDMKKKGILPD 363



 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 94/205 (45%), Gaps = 25/205 (12%)

Query: 40  DQPTKKYVNTKSKLPPPYDPFKKVV----------DEEPTDPRNLQEIFHKMRTEGLTNN 89
           D+  K + + KS +  P D +   +          DEE T       +F +M   G T +
Sbjct: 101 DEACKLFASMKS-MGCPADDYTYAILIRSLGRCKRDEEAT------LLFDEMEERGCTPS 153

Query: 90  A---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFM 146
           A     + D   K G    A+ +  ++ DK   PD     ++I A +  G+ + A  +F 
Sbjct: 154 APAYTNVIDIYCKAGRIESAMVVLKKMLDKNLAPDDYTLNSLITAVSRTGRTELACEIFE 213

Query: 147 RMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEA 206
           RM  SGVA N  ++  ++        G A  +G A +++ EM  +G++PN+ T+  +   
Sbjct: 214 RMKKSGVAVNTVSFNAMLDCC-----GKAGKVGLAYQFMDEMEARGIKPNSITFNTLINC 268

Query: 207 FVRAQKVDEARGLLQQMKAKGFVPD 231
             RA+   EA  +LQ+M++ G  PD
Sbjct: 269 LGRAKYASEAYKVLQEMRSAGLTPD 293



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 68/135 (50%), Gaps = 5/135 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +  A+S+ G T  A ++F ++K  G   + V+  A+++    AG+   A +    M A G
Sbjct: 195 LITAVSRTGRTELACEIFERMKKSGVAVNTVSFNAMLDCCGKAGKVGLAYQFMDEMEARG 254

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN+ T+  LI  L     G AK   +A K L EM   G+ P+  TYT + EAF +A  
Sbjct: 255 IKPNSITFNTLINCL-----GRAKYASEAYKVLQEMRSAGLTPDVFTYTCMIEAFAKAGN 309

Query: 213 VDEARGLLQQMKAKG 227
           + +A  +   M+  G
Sbjct: 310 MGKAFEMFGDMEKAG 324



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 90/205 (43%), Gaps = 24/205 (11%)

Query: 35  LSSSSDQPTKKYVNTKSKLPPPY---DPFKKVVDEEPTDPRNLQEIFHKMRTEGLTNNAV 91
           L++  D P + +V   + +   Y       KV+DE           F ++   G   NA 
Sbjct: 2   LAAIQDTPCRYHVLVSNAVIAAYGRSSRIHKVMDE-----------FQELDKHGSKPNAY 50

Query: 92  K---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRM 148
               +  +L K G    A+    ++   G  PD + +  V++    A    EA ++F  M
Sbjct: 51  TYKCVIQSLVKAGNVVLAMDFLDKMIKTGLEPDTLLYNVVLDGLGKANMIDEACKLFASM 110

Query: 149 LASGVAPNAYTYAVLIKGLA-AAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAF 207
            + G   + YTYA+LI+ L     D  A +L D      EM  +G  P+A  YT V + +
Sbjct: 111 KSMGCPADDYTYAILIRSLGRCKRDEEATLLFD------EMEERGCTPSAPAYTNVIDIY 164

Query: 208 VRAQKVDEARGLLQQMKAKGFVPDE 232
            +A +++ A  +L++M  K   PD+
Sbjct: 165 CKAGRIESAMVVLKKMLDKNLAPDD 189



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 59/124 (47%), Gaps = 5/124 (4%)

Query: 109 LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
           + A I+D      V+   AVI AY  + +  + +  F  +   G  PNAYTY  +I+ L 
Sbjct: 1   MLAAIQDTPCRYHVLVSNAVIAAYGRSSRIHKVMDEFQELDKHGSKPNAYTYKCVIQSLV 60

Query: 169 AAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
            A  GN  +   A  +L +M+  G+ P+   Y  V +   +A  +DEA  L   MK+ G 
Sbjct: 61  KA--GNVVL---AMDFLDKMIKTGLEPDTLLYNVVLDGLGKANMIDEACKLFASMKSMGC 115

Query: 229 VPDE 232
             D+
Sbjct: 116 PADD 119



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 8/131 (6%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +   +M   G+  N++    + + L +     EA ++  +++  G  PDV  +T +IEA+
Sbjct: 245 QFMDEMEARGIKPNSITFNTLINCLGRAKYASEAYKVLQEMRSAGLTPDVFTYTCMIEAF 304

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           A AG   +A  +F  M  +G + N  TY +LI  L  A         DA+    +M  KG
Sbjct: 305 AKAGNMGKAFEMFGDMEKAGCSANVVTYNLLIDALVKAGR-----YQDARDIYFDMKKKG 359

Query: 193 MRPNAGTYTAV 203
           + P+A T T +
Sbjct: 360 ILPDAITATVL 370


>gi|225451367|ref|XP_002263590.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680 [Vitis vinifera]
 gi|296087085|emb|CBI33459.3| unnamed protein product [Vitis vinifera]
          Length = 592

 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 65/135 (48%), Gaps = 5/135 (3%)

Query: 97  LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
           L K+   +EA  LF +I  +G  P VV+   +I  Y  +G   +  R+   M+ + V P+
Sbjct: 235 LCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPD 294

Query: 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
            +TY+VLI GL          L DA K  +EM  +G+ PN  T+T +        + D  
Sbjct: 295 VFTYSVLINGLCKEGQ-----LDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLG 349

Query: 217 RGLLQQMKAKGFVPD 231
             + QQM  KG  PD
Sbjct: 350 MEIYQQMLRKGVKPD 364



 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 75/142 (52%), Gaps = 5/142 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K+G   +A +LF ++ D+G +P+ V  T +I  +   G+    + ++ +ML  G
Sbjct: 301 LINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKG 360

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V P+  TY  LI GL    D     L +A+K ++EM  +G++P+  TYT + +   +   
Sbjct: 361 VKPDVITYNTLINGLCKVGD-----LREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGD 415

Query: 213 VDEARGLLQQMKAKGFVPDEKA 234
           ++ A  + ++M  +G   D  A
Sbjct: 416 LESALEIRKEMVKEGIELDNVA 437



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 81/189 (42%), Gaps = 33/189 (17%)

Query: 75  QEIFHKMRTEGLTNNAVKMFDALSKDGLTHEA---LQLFAQIKDKGHMPDVVAHTAVIEA 131
            ++F +M   GL  N V     ++   +T  A   ++++ Q+  KG  PDV+ +  +I  
Sbjct: 315 NKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLING 374

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD------------------- 172
               G  +EA ++ + M   G+ P+ +TY +LI G     D                   
Sbjct: 375 LCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELD 434

Query: 173 ---GNAKILG--------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221
                A I G        +A++ L EM+  G++P+  TYT V   F +   V     LL+
Sbjct: 435 NVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLK 494

Query: 222 QMKAKGFVP 230
           +M+  G VP
Sbjct: 495 EMQCDGHVP 503



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 62/140 (44%), Gaps = 5/140 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   K+G    AL++  ++  +G   D VA TA+I  +   GQ  EA R    ML +G
Sbjct: 406 LIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAG 465

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+  TY ++I G     D     +    K L EM   G  P   TY  +     +  +
Sbjct: 466 IKPDDATYTMVIHGFCKKGD-----VKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQ 520

Query: 213 VDEARGLLQQMKAKGFVPDE 232
           +  A  LL  M   G VPD+
Sbjct: 521 MKNANMLLDAMLNLGVVPDD 540



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 86/207 (41%), Gaps = 26/207 (12%)

Query: 55  PPYDPFKKVVDE-EPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQI 113
           P +  +++++D   P D      + H++  E   N A  +F  + K GL    +     I
Sbjct: 208 PAWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLI 267

Query: 114 K--------DKGH-----------MPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
                    D+G             PDV  ++ +I      GQ  +A ++F+ M   G+ 
Sbjct: 268 NGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLV 327

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
           PN  T+  LI G      G A +     +   +M+ KG++P+  TY  +     +   + 
Sbjct: 328 PNDVTFTTLING--HCVTGRADL---GMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLR 382

Query: 215 EARGLLQQMKAKGFVPDEKAVKEALID 241
           EA+ L+ +M  +G  PD K     LID
Sbjct: 383 EAKKLVIEMTQRGLKPD-KFTYTMLID 408



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 65/156 (41%), Gaps = 16/156 (10%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           EI  +M  EG+  + V    +     ++G   EA +   ++ + G  PD   +T VI  +
Sbjct: 421 EIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGF 480

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD-GNAKILGDAQKYLMEMVGK 191
              G  K   ++   M   G  P   TY VL+ GL       NA +L DA      M+  
Sbjct: 481 CKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDA------MLNL 534

Query: 192 GMRPNAGTYTAVFEAFVRA------QKVDEARGLLQ 221
           G+ P+  TY  + E   +        K+   +GL+Q
Sbjct: 535 GVVPDDITYNILLEGHCKHGNREDFDKLQSEKGLVQ 570



 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 8/122 (6%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
              K G      +L  +++  GH+P VV +  ++      GQ K A  +   ML  GV P
Sbjct: 479 GFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVP 538

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY +L++G      GN +   D  K   E   KG+  + G+YT++     +  K  +
Sbjct: 539 DDITYNILLEG--HCKHGNRE---DFDKLQSE---KGLVQDYGSYTSLIGDLRKTCKERQ 590

Query: 216 AR 217
            R
Sbjct: 591 KR 592


>gi|42408236|dbj|BAD09393.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|125601932|gb|EAZ41257.1| hypothetical protein OsJ_25765 [Oryza sativa Japonica Group]
          Length = 798

 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 90/191 (47%), Gaps = 11/191 (5%)

Query: 48  NTKSKLPPPYDPFKKVVDEEPTDPRNLQEIFH---KMRTEGLTNNAV---KMFDALSKDG 101
           +T+   PP    +  V++    + R L   +H   +M  +GL+ + V    +  ALSK  
Sbjct: 193 DTRGGYPPDVVSYNTVINGLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKAR 252

Query: 102 LTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYA 161
              +A  +  ++   G MP+ + H +++  Y S+G+  +A+ VF RM   GV P+ +TY 
Sbjct: 253 AMDKAAVVLVRMVKNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYN 312

Query: 162 VLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221
            L+  L      N + + +A+K    MV +G +PN+ TY  +   +     + +   LL 
Sbjct: 313 TLMGYLCK----NGRSM-EARKIFDSMVKRGHKPNSATYGTLLHGYATEGSLVKMHHLLD 367

Query: 222 QMKAKGFVPDE 232
            M   G  PD 
Sbjct: 368 MMVRNGIQPDH 378



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 75/170 (44%), Gaps = 40/170 (23%)

Query: 98  SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA 157
           +K G   +A+ LF++++ +G  PD V +  V++A    G+  +A+  F R+++ G+ P+A
Sbjct: 389 TKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDALCMVGKVDDAMAQFGRLISEGLTPDA 448

Query: 158 YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN--------------------- 196
             +  LI GL A    +      A++  +EM+G+G+ PN                     
Sbjct: 449 VVFRNLIHGLCARDKWDK-----AEELAVEMIGRGICPNNIFFNTLLNHLCKEGMVARAK 503

Query: 197 --------------AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
                           TY  + + +    KVDEA  LL+ M   G  P+E
Sbjct: 504 NIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLLEGMVLDGVKPNE 553



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 77/164 (46%), Gaps = 8/164 (4%)

Query: 71  PRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P +   +F +M  +G+  +      +   L K+G + EA ++F  +  +GH P+   +  
Sbjct: 289 PNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRGHKPNSATYGT 348

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           ++  YA+ G   +   +   M+ +G+ P+ Y + +LI         + K+  DA     +
Sbjct: 349 LLHGYATEGSLVKMHHLLDMMVRNGIQPDHYIFNILI----GTYTKHGKV-DDAMLLFSK 403

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           M  +G+ P+  TY  V +A     KVD+A     ++ ++G  PD
Sbjct: 404 MRRQGLNPDTVTYGIVMDALCMVGKVDDAMAQFGRLISEGLTPD 447



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 80/187 (42%), Gaps = 33/187 (17%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F KMR +GL  + V    + DAL   G   +A+  F ++  +G  PD V    +I    
Sbjct: 400 LFSKMRRQGLNPDTVTYGIVMDALCMVGKVDDAMAQFGRLISEGLTPDAVVFRNLIHGLC 459

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLI-----KGLAAAADG--------------- 173
           +  +  +A  + + M+  G+ PN   +  L+     +G+ A A                 
Sbjct: 460 ARDKWDKAEELAVEMIGRGICPNNIFFNTLLNHLCKEGMVARAKNIFDLMVRVDVQRDVI 519

Query: 174 --NAKILG--------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
             N  I G        +A K L  MV  G++PN  TY  +   + +  ++++A  L +QM
Sbjct: 520 TYNTLIDGYCLHGKVDEAAKLLEGMVLDGVKPNEVTYNTMINGYCKNGRIEDAFSLFRQM 579

Query: 224 KAKGFVP 230
            +KG  P
Sbjct: 580 ASKGVNP 586



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 70/157 (44%), Gaps = 8/157 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+  +M   G+  N +    + + L K+G+   A  +F  +       DV+ +  +I+ 
Sbjct: 468 EELAVEMIGRGICPNNIFFNTLLNHLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDG 527

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y   G+  EA ++   M+  GV PN  TY  +I G       N +I  DA     +M  K
Sbjct: 528 YCLHGKVDEAAKLLEGMVLDGVKPNEVTYNTMINGYCK----NGRI-EDAFSLFRQMASK 582

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
           G+ P   TY+ + +   +A++   A+ L   M   G 
Sbjct: 583 GVNPGIVTYSTILQGLFQARRTAAAKELYLWMIKSGI 619



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 72/159 (45%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++   M  +G+  N V    M +   K+G   +A  LF Q+  KG  P +V ++ +++  
Sbjct: 539 KLLEGMVLDGVKPNEVTYNTMINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTILQGL 598

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             A +   A  +++ M+ SG+  +  TY +++ GL            DA +    +    
Sbjct: 599 FQARRTAAAKELYLWMIKSGIKFDIGTYNIILLGLC-----QNNCTDDALRIFQNLYLID 653

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
                 T+  + +A ++  + DEA+ L   + A+G VP+
Sbjct: 654 FHLENRTFNIMIDALLKGGRHDEAKDLFASLLARGLVPN 692



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 5/136 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D     G   EA +L   +   G  P+ V +  +I  Y   G+ ++A  +F +M + G
Sbjct: 524 LIDGYCLHGKVDEAAKLLEGMVLDGVKPNEVTYNTMINGYCKNGRIEDAFSLFRQMASKG 583

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V P   TY+ +++GL  A    A     A++  + M+  G++ + GTY  +     +   
Sbjct: 584 VNPGIVTYSTILQGLFQARRTAA-----AKELYLWMIKSGIKFDIGTYNIILLGLCQNNC 638

Query: 213 VDEARGLLQQMKAKGF 228
            D+A  + Q +    F
Sbjct: 639 TDDALRIFQNLYLIDF 654



 Score = 45.8 bits (107), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 31/141 (21%), Positives = 59/141 (41%), Gaps = 2/141 (1%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMR-MLAS 151
           + D  S+ G    A     ++   G   + +  + +++A     +  EA+ + +R M   
Sbjct: 97  VIDCCSRVGHLDLAFAALGRVIRSGWTAEAITFSPLLKALCDKKRTSEAMDIALRRMPVL 156

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVR-A 210
           G  PN ++Y +L+KGL         +       + +    G  P+  +Y  V    +R  
Sbjct: 157 GCTPNVFSYTILLKGLCDENRSQQALHLLHTMMVADDTRGGYPPDVVSYNTVINGLLREG 216

Query: 211 QKVDEARGLLQQMKAKGFVPD 231
           +++D A  L  QM  +G  PD
Sbjct: 217 RQLDTAYHLFDQMLDQGLSPD 237


>gi|326513966|dbj|BAJ92133.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 537

 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 67/132 (50%), Gaps = 9/132 (6%)

Query: 100 DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYT 159
           D L H     +A + + G +PD V+H  +IEA   AGQ +EALRVF +M+  G  P    
Sbjct: 263 DKLQH----FWAMMLEDGLVPDDVSHCHLIEALGRAGQAEEALRVFEKMVQEGYGPTTMA 318

Query: 160 YAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGL 219
           Y  L+    +  D +  I     KY  +MV     PN+ TY  +  A ++ ++V +A  +
Sbjct: 319 YNALVFNFISVGDLDRSI-----KYYKDMVDNNCPPNSDTYCKMIRALLKTRRVADALQM 373

Query: 220 LQQMKAKGFVPD 231
              M A+G +PD
Sbjct: 374 FDDMLAQGVLPD 385



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 69/138 (50%), Gaps = 8/138 (5%)

Query: 74  LQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           LQ  +  M  +GL  + V    + +AL + G   EAL++F ++  +G+ P  +A+ A++ 
Sbjct: 265 LQHFWAMMLEDGLVPDDVSHCHLIEALGRAGQAEEALRVFEKMVQEGYGPTTMAYNALVF 324

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
            + S G    +++ +  M+ +   PN+ TY  +I+ L        + + DA +   +M+ 
Sbjct: 325 NFISVGDLDRSIKYYKDMVDNNCPPNSDTYCKMIRALL-----KTRRVADALQMFDDMLA 379

Query: 191 KGMRPNAGTYTAVFEAFV 208
           +G+ P+ G  T+  E   
Sbjct: 380 QGVLPDTGIITSFIEPLC 397



 Score = 46.2 bits (108), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 59/143 (41%), Gaps = 5/143 (3%)

Query: 87  TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFM 146
           ++   KM  AL K     +ALQ+F  +  +G +PD    T+ IE   + G    AL ++ 
Sbjct: 351 SDTYCKMIRALLKTRRVADALQMFDDMLAQGVLPDTGIITSFIEPLCTFGPPHAALMIYQ 410

Query: 147 RMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEA 206
           +   +G   +  TY +L++ LA          G       EM   G   +   Y  +   
Sbjct: 411 KSRKAGCTISLKTYKLLLERLARFGKS-----GTVLNIWEEMQESGYPSDKEIYEFIVNG 465

Query: 207 FVRAQKVDEARGLLQQMKAKGFV 229
                KVD A  ++++   KGF 
Sbjct: 466 LCNVGKVDAAVFVVEESLRKGFC 488


>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Brachypodium distachyon]
          Length = 757

 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 82/165 (49%), Gaps = 8/165 (4%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           DP     +F +M++ G T + V    + D L   G   +AL L  +++  G     V + 
Sbjct: 421 DPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYN 480

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
            +I+      + +EA  VF +M  +G+  NA T+  LI GL      NA+ + DA + + 
Sbjct: 481 TIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLC-----NAERIDDAAELVD 535

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +M+ +G++PN  TY ++   + +   + +A  +LQ M A GF  D
Sbjct: 536 QMISEGLQPNNVTYNSILTHYCKQGNISKAADILQTMTANGFEVD 580



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+F +M   G+  NA+    + D L       +A +L  Q+  +G  P+ V + +++  
Sbjct: 496 EEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMISEGLQPNNVTYNSILTH 555

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y   G   +A  +   M A+G   +  TYA LI GL  A    A     A K L  M  K
Sbjct: 556 YCKQGNISKAADILQTMTANGFEVDVVTYATLINGLCKARRTQA-----ALKLLRGMRMK 610

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           GM+P    Y  V ++  R     +A  L ++M   G  PD
Sbjct: 611 GMKPTPKAYNPVIQSLFRGNNGRDALSLFREMTEVGGPPD 650



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 6/149 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L  +G   EA  +  Q+ D G +PD      +I A  +  Q +EAL +   +   G
Sbjct: 342 VINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLARELTVKG 401

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           ++PN YT+ +LI  L    D +  +     +   EM   G  P+  TY  + +    + K
Sbjct: 402 LSPNVYTFNILINALCKVGDPHLAV-----RLFEEMKSSGCTPDEVTYNILIDNLCSSGK 456

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALID 241
           + +A  LL++M+  G  P        +ID
Sbjct: 457 LAKALDLLKEMEVSG-CPQSTVTYNTIID 484



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 60/139 (43%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +   K G   +AL    Q    G  PD V  +  +      G    AL+V   ML  G
Sbjct: 272 LINGYCKLGRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEG 331

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+ YTY+ +I  L      N   L +A+  + +MV  G  P+  T+  +  A     +
Sbjct: 332 CEPDVYTYSTVINCLC-----NNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQ 386

Query: 213 VDEARGLLQQMKAKGFVPD 231
           ++EA  L +++  KG  P+
Sbjct: 387 LEEALDLARELTVKGLSPN 405



 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 70/161 (43%), Gaps = 8/161 (4%)

Query: 74  LQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           L+  + +M ++G+  + V    + DAL +      A+ +  ++      PD    T ++E
Sbjct: 180 LESAYTEMSSQGIEPDVVTFNTVIDALCRARQARTAVLMLEEMSSCDVAPDETTFTTLME 239

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
            +   G  + ALR+  RM   G +P + T  VLI G           +GDA  Y+ + + 
Sbjct: 240 GFVEEGSIEAALRLKARMSEMGCSPTSVTVNVLINGYCKLGR-----VGDALGYIQQEIA 294

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            G  P+  T++       +   VD A  +L  M  +G  PD
Sbjct: 295 DGFEPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPD 335



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 7/136 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +I   M   G   + V    + + L K   T  AL+L   ++ KG  P   A+  VI++ 
Sbjct: 567 DILQTMTANGFEVDVVTYATLINGLCKARRTQAALKLLRGMRMKGMKPTPKAYNPVIQSL 626

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
                G++AL +F  M   G  P+A+TY ++ +GL     G  K   +A  +L+EM   G
Sbjct: 627 FRGNNGRDALSLFREMTEVGGPPDAFTYKIVFRGLCRGG-GPIK---EAFDFLVEMADNG 682

Query: 193 MRPNAGTYTAVFEAFV 208
             P   ++  + E  +
Sbjct: 683 FIPEFSSFRMLAEGLL 698



 Score = 37.4 bits (85), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 14/119 (11%)

Query: 118 HMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKI 177
           H+  V+A  + I+   SA         +  M + G+ P+  T+  +I  L  A      +
Sbjct: 166 HLLTVLAEGSKIKLLESA---------YTEMSSQGIEPDVVTFNTVIDALCRARQARTAV 216

Query: 178 LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK 236
           L      L EM    + P+  T+T + E FV    ++ A  L  +M   G  P    V 
Sbjct: 217 L-----MLEEMSSCDVAPDETTFTTLMEGFVEEGSIEAALRLKARMSEMGCSPTSVTVN 270


>gi|18391414|ref|NP_563911.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75167758|sp|Q9ASZ8.1|PPR37_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g12620
 gi|13605505|gb|AAK32746.1|AF361578_1 At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|24111307|gb|AAN46777.1| At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|332190781|gb|AEE28902.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 621

 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 90/192 (46%), Gaps = 21/192 (10%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+  KM    +  +AVK   + D L KDG    A  LF +++ KG   D++ +T +I  +
Sbjct: 233 ELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGF 292

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             AG+  +  ++   M+   + P+   ++ LI             L +A++   EM+ +G
Sbjct: 293 CYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGK-----LREAEELHKEMIQRG 347

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA--------VKEALIDK-- 242
           + P+  TYT++ + F +  ++D+A  +L  M +KG  P+ +          K  LID   
Sbjct: 348 ISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGL 407

Query: 243 ---RGQGFRGVI 251
              R    RGV+
Sbjct: 408 ELFRKMSLRGVV 419



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 68/139 (48%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   K+G   EA +L  ++  +G  PD V +T++I+ +    Q  +A  +   M++ G
Sbjct: 323 LIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKG 382

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN  T+ +LI G        A ++ D  +   +M  +G+  +  TY  + + F    K
Sbjct: 383 CGPNIRTFNILINGYC-----KANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGK 437

Query: 213 VDEARGLLQQMKAKGFVPD 231
           ++ A+ L Q+M ++   PD
Sbjct: 438 LEVAKELFQEMVSRRVRPD 456



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 69/139 (49%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L  +G   EAL+L  ++ + GH P ++   A++      G+  +A+ +  RM+ +G
Sbjct: 148 LINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETG 207

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN  TY  ++K +  +  G   +   A + L +M  + ++ +A  Y+ + +   +   
Sbjct: 208 FQPNEVTYGPVLKVMCKS--GQTAL---AMELLRKMEERKIKLDAVKYSIIIDGLCKDGS 262

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +D A  L  +M+ KGF  D
Sbjct: 263 LDNAFNLFNEMEIKGFKAD 281



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 66/145 (45%), Gaps = 11/145 (7%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +   K  L  + L+LF ++  +G + D V +  +I+ +   G+ + A  +F  M++  
Sbjct: 393 LINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRR 452

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL--MEMVGKG-MRPNAGTYTAVFEAFVR 209
           V P+  +Y +L+ GL           G+ +K L   E + K  M  + G Y  +      
Sbjct: 453 VRPDIVSYKILLDGLCDN--------GEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCN 504

Query: 210 AQKVDEARGLLQQMKAKGFVPDEKA 234
           A KVD+A  L   +  KG  PD K 
Sbjct: 505 ASKVDDAWDLFCSLPLKGVKPDVKT 529



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 74/165 (44%), Gaps = 8/165 (4%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+F +M +  +  + V    + D L  +G   +AL++F +I+      D+  +  +I  
Sbjct: 442 KELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHG 501

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
             +A +  +A  +F  +   GV P+  TY ++I GL          L +A     +M   
Sbjct: 502 MCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGS-----LSEADLLFRKMEED 556

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK 236
           G  PN  TY  +  A +      ++  L++++K  GF  D   VK
Sbjct: 557 GHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTVK 601



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 74/159 (46%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F KM   G+  + V    +     + G    A +LF ++  +   PD+V++  +++  
Sbjct: 408 ELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGL 467

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+ ++AL +F ++  S +  +   Y ++I G+      NA  + DA      +  KG
Sbjct: 468 CDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMC-----NASKVDDAWDLFCSLPLKG 522

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           ++P+  TY  +     +   + EA  L ++M+  G  P+
Sbjct: 523 VKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPN 561



 Score = 53.5 bits (127), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 10/168 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++  +M  +G+ +N      M +   +      A     +I   G+ PD V  + +I   
Sbjct: 93  DLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGL 152

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+  EAL +  RM+  G  P   T   L+ GL      N K+  DA   +  MV  G
Sbjct: 153 CLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCL----NGKV-SDAVLLIDRMVETG 207

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
            +PN  TY  V +   ++ +   A  LL++M+ +    D  AVK ++I
Sbjct: 208 FQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLD--AVKYSII 253



 Score = 42.7 bits (99), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 68/164 (41%), Gaps = 16/164 (9%)

Query: 52  KLPPPYDPFKKVVD--EEPTDPRNLQEIFHKMRTE------GLTNNAVKMFDALSKDGLT 103
           ++ P    +K ++D   +  +P    EIF K+         G+ N  +      SK    
Sbjct: 452 RVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASK---V 508

Query: 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
            +A  LF  +  KG  PDV  +  +I      G   EA  +F +M   G +PN  TY +L
Sbjct: 509 DDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNIL 568

Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAF 207
           I+  A   +G+A     + K + E+   G   +A T   V +  
Sbjct: 569 IR--AHLGEGDAT---KSAKLIEEIKRCGFSVDASTVKMVVDML 607


>gi|356540375|ref|XP_003538665.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
           chloroplastic-like [Glycine max]
          Length = 1476

 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 85/166 (51%), Gaps = 8/166 (4%)

Query: 72  RNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R  +E+F ++ ++G   +AV    +  A S++G T +   +  ++  +G   D + +  +
Sbjct: 373 RKAEELFKELESKGFFPDAVTYNSLLYAFSREGNTEKVRDICEEMVKRGFGQDEMTYNTI 432

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I  Y   G+  +A++++  M +SG  P+A TY VLI  L     G A  + +A   + EM
Sbjct: 433 IHMYGKQGRHDQAMQIYRDMKSSGRNPDAVTYTVLIDSL-----GKASKVEEAANVMSEM 487

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
           +  G++P   TY+A+  A+ +A K +EA      M+  G  PD  A
Sbjct: 488 LDAGVKPTLHTYSALICAYAKAGKREEAEETFNCMRRSGIKPDRLA 533



 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 74/144 (51%), Gaps = 8/144 (5%)

Query: 88  NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMR 147
           N  + M+    K G   +A+Q++  +K  G  PD V +T +I++   A + +EA  V   
Sbjct: 430 NTIIHMY---GKQGRHDQAMQIYRDMKSSGRNPDAVTYTVLIDSLGKASKVEEAANVMSE 486

Query: 148 MLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAF 207
           ML +GV P  +TY+ LI   A A         +A++    M   G++P+   Y+ + + F
Sbjct: 487 MLDAGVKPTLHTYSALICAYAKAGKRE-----EAEETFNCMRRSGIKPDRLAYSVMLDFF 541

Query: 208 VRAQKVDEARGLLQQMKAKGFVPD 231
           +R  ++ +A GL  +M  +GF PD
Sbjct: 542 LRFNEMKKAMGLYHEMIREGFTPD 565



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 73/152 (48%), Gaps = 8/152 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +I+  M++ G   +AV    + D+L K     EA  + +++ D G  P +  ++A+I AY
Sbjct: 447 QIYRDMKSSGRNPDAVTYTVLIDSLGKASKVEEAANVMSEMLDAGVKPTLHTYSALICAY 506

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           A AG+ +EA   F  M  SG+ P+   Y+V++       +     +  A     EM+ +G
Sbjct: 507 AKAGKREEAEETFNCMRRSGIKPDRLAYSVMLDFFLRFNE-----MKKAMGLYHEMIREG 561

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
             P+ G Y  +  A VR    D    +++ M+
Sbjct: 562 FTPDNGLYEVMMHALVRENMWDVVDRIIRDME 593



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 86/180 (47%), Gaps = 9/180 (5%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           +P    ++ +++R  G+  + +    +  A S++    EA+ +F+ ++     PD+  + 
Sbjct: 301 EPNLALQLLNEVRRSGIRPDIITYNTLISACSRESNLEEAVAVFSDMESHRCQPDLWTYN 360

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
           A+I  Y    + ++A  +F  + + G  P+A TY  L+   A + +GN + + D  +   
Sbjct: 361 AMISVYGRCARARKAEELFKELESKGFFPDAVTYNSLL--YAFSREGNTEKVRDICE--- 415

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
           EMV +G   +  TY  +   + +  + D+A  + + MK+ G  PD       LID  G+ 
Sbjct: 416 EMVKRGFGQDEMTYNTIIHMYGKQGRHDQAMQIYRDMKSSGRNPD-AVTYTVLIDSLGKA 474



 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 67/157 (42%), Gaps = 8/157 (5%)

Query: 75   QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            +E+F ++R+ G   +      M       G   +A  L A +K+ G  P +     ++ +
Sbjct: 1039 EELFEELRSNGYKLDRAFYHLMMKTYRTSGDHRKAENLLAIMKESGIEPTISTMHLLMVS 1098

Query: 132  YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
            Y  +GQ +EA  V   +  +GV  +   Y+ +I       D  A I     + L EM   
Sbjct: 1099 YGKSGQPEEAENVLKNLRTTGVVLDTLPYSSVIDAYLKKGDFKAGI-----EKLTEMKEA 1153

Query: 192  GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
            G+ P+   +T    A   ++  +EA  LL  ++  GF
Sbjct: 1154 GIEPDHRIWTCFIRAATLSEGTNEAIVLLNALQDAGF 1190



 Score = 46.2 bits (108), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 38/179 (21%), Positives = 78/179 (43%), Gaps = 13/179 (7%)

Query: 77   IFHKMRTEG---LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
            IF+ M  +G     ++   +  AL  D   +E   +  +++D G      +    +EA+A
Sbjct: 831  IFNTMMRDGPSPTVDSVNGLLQALIVDRRLNELYVVIQELQDMGLKISKSSILLTLEAFA 890

Query: 134  SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             AG   E  +++  M A+G  P  + Y ++++ L        K + D +  L EM   G 
Sbjct: 891  QAGNLFEVQKIYNGMKAAGYFPTMHVYRIMLRLLC-----KCKRVRDVETMLCEMEEAGF 945

Query: 194  RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI----DKR-GQGF 247
            +P+     ++ + ++  +       + Q+++     PDE+     +I    D+R  +GF
Sbjct: 946  QPDLQICNSILKLYLGIEDFKSMGIIYQKIQDASLKPDEETYNTLIIMYCRDRRPEEGF 1004


>gi|357438771|ref|XP_003589662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478710|gb|AES59913.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 988

 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 81/156 (51%), Gaps = 8/156 (5%)

Query: 80  KMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           +M+ EG   + +    + + L K G   +A +L  +++ +G +PD V +T++I A+  +G
Sbjct: 477 EMKAEGFPPDLITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLISG 536

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196
             ++A  VF  ML  G+ P+  TY VLI   A         L  A+KY  EM  KG+ PN
Sbjct: 537 LLRKAEEVFSDMLKKGIHPSVVTYTVLIHSYAVRGR-----LDFAKKYFDEMQDKGVSPN 591

Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
             TY A+     +   +D A  L  +M++KG  P++
Sbjct: 592 VITYNALIYGLCKENMMDVAYNLFAEMESKGVSPNK 627



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 73/160 (45%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            E+  KMR EG+  + V    +  A    GL  +A ++F+ +  KG  P VV +T +I +
Sbjct: 507 NELVQKMRLEGIVPDHVTYTSIIHAHLISGLLRKAEEVFSDMLKKGIHPSVVTYTVLIHS 566

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           YA  G+   A + F  M   GV+PN  TY  LI GL         ++  A     EM  K
Sbjct: 567 YAVRGRLDFAKKYFDEMQDKGVSPNVITYNALIYGLC-----KENMMDVAYNLFAEMESK 621

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G+ PN  TYT +       Q   +A  L + M  +   PD
Sbjct: 622 GVSPNKYTYTILINENSNLQYWQDALKLYKDMLDREIKPD 661



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 69/134 (51%), Gaps = 5/134 (3%)

Query: 98  SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA 157
           S+ G   EAL LF++++ K  +P VV +  +I+     G    A  +   M+  G+ P+ 
Sbjct: 358 SRLGNFAEALLLFSELRSKNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPDV 417

Query: 158 YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
            T+ +L++G     +     L  A++   EM+ +G++P+   YT      ++     +A 
Sbjct: 418 VTFTILVRGFCQMGN-----LPMAKELFDEMLSRGLKPDCIAYTTRIVGELKLGNPSKAF 472

Query: 218 GLLQQMKAKGFVPD 231
           G+ ++MKA+GF PD
Sbjct: 473 GMKEEMKAEGFPPD 486



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 66/136 (48%), Gaps = 5/136 (3%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
           +L + G   +A +    + ++  MPD+V++  +I  Y+  G   EAL +F  + +  + P
Sbjct: 321 SLCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFAEALLLFSELRSKNLVP 380

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY  LI G      GN  I   A+    +M+  G+ P+  T+T +   F +   +  
Sbjct: 381 SVVTYNTLIDG--GCRTGNLDI---AKGMKDDMIKHGLCPDVVTFTILVRGFCQMGNLPM 435

Query: 216 ARGLLQQMKAKGFVPD 231
           A+ L  +M ++G  PD
Sbjct: 436 AKELFDEMLSRGLKPD 451



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 75/160 (46%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVKMFDALS---KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+F +M + GL  + +     +    K G   +A  +  ++K +G  PD++ +  +I  
Sbjct: 437 KELFDEMLSRGLKPDCIAYTTRIVGELKLGNPSKAFGMKEEMKAEGFPPDLITYNVLING 496

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G   +A  +  +M   G+ P+  TY  +I     +      +L  A++   +M+ K
Sbjct: 497 LCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLISG-----LLRKAEEVFSDMLKK 551

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G+ P+  TYT +  ++    ++D A+    +M+ KG  P+
Sbjct: 552 GIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGVSPN 591



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 73/157 (46%), Gaps = 8/157 (5%)

Query: 77  IFHKMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F+KM   GL     N  ++   L    + +E  ++++ +      P +V    ++++  
Sbjct: 159 VFYKMVNNGLLPDVRNCNRVLKLLKDKSMVNEVEEVYSVMIKCQIRPTIVTFNTMMDSRC 218

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G+   A+ V   M   G  PN  +Y VL+ GL+   + +      A++ + +M   G+
Sbjct: 219 KEGEVGRAVEVLDVMRMFGCDPNDVSYNVLVNGLSGKGEFDR-----AKELIEQMSMLGL 273

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           + +A TY  +   F + +  +EA  L ++M  +G +P
Sbjct: 274 KVSAHTYNPLIRGFCKKEMFEEANDLRREMLGRGALP 310



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M D+  K+G    A+++   ++  G  P+ V++  ++   +  G+   A  +  +M   G
Sbjct: 213 MMDSRCKEGEVGRAVEVLDVMRMFGCDPNDVSYNVLVNGLSGKGEFDRAKELIEQMSMLG 272

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +  +A+TY  LI+G         ++  +A     EM+G+G  P   TY  +  +  R  +
Sbjct: 273 LKVSAHTYNPLIRGFC-----KKEMFEEANDLRREMLGRGALPTVVTYNTIMYSLCRLGR 327

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V +AR  L  M  +  +PD
Sbjct: 328 VSDARRYLDVMVNEDLMPD 346



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 5/125 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A +LF ++  +G  PD +A+T  I      G   +A  +   M A G  P+  TY VLI 
Sbjct: 436 AKELFDEMLSRGLKPDCIAYTTRIVGELKLGNPSKAFGMKEEMKAEGFPPDLITYNVLIN 495

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           GL    +       DA + + +M  +G+ P+  TYT++  A + +  + +A  +   M  
Sbjct: 496 GLCKLGN-----FDDANELVQKMRLEGIVPDHVTYTSIIHAHLISGLLRKAEEVFSDMLK 550

Query: 226 KGFVP 230
           KG  P
Sbjct: 551 KGIHP 555



 Score = 45.4 bits (106), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 53/94 (56%), Gaps = 3/94 (3%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F +M+ +G++ N +    +   L K+ +   A  LFA+++ KG  P+   +T +I   ++
Sbjct: 580 FDEMQDKGVSPNVITYNALIYGLCKENMMDVAYNLFAEMESKGVSPNKYTYTILINENSN 639

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
               ++AL+++  ML   + P++ T++ L+K L+
Sbjct: 640 LQYWQDALKLYKDMLDREIKPDSCTHSALMKHLS 673


>gi|302826107|ref|XP_002994593.1| hypothetical protein SELMODRAFT_138846 [Selaginella moellendorffii]
 gi|300137364|gb|EFJ04344.1| hypothetical protein SELMODRAFT_138846 [Selaginella moellendorffii]
          Length = 521

 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 54/200 (27%), Positives = 95/200 (47%), Gaps = 11/200 (5%)

Query: 50  KSKLPPPYDPFKK--VVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTH 104
           K +  P  D + +  V+  +  +P   + ++  MR      N      + +A ++ GL  
Sbjct: 202 KYECEPNIDTYNRMIVIYGKAGEPSKAEMLYRSMRRAMCPPNICTFTALMNAFARQGLYR 261

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA + F ++++  + PD  A+ A++EAY+  G    AL +F  M  +G  P+  ++ +LI
Sbjct: 262 EAERYFDKLQEFDYKPDHYAYNALMEAYSQGGSPAGALEIFQTMQRNGCFPDTVSHNILI 321

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
                 A G A +  DA+K    M   G  PN  +   +  A+ RA +V+EA  L+  M+
Sbjct: 322 N-----AYGRAGLYEDAEKIFKSMQSAGFSPNLKSNMLLLSAYARAGRVEEAEELVSAME 376

Query: 225 AKGFVPDEKAVKEALIDKRG 244
             G  PD   +  +LI+  G
Sbjct: 377 RDGTKPD-TLIYNSLINAYG 395



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 74/167 (44%), Gaps = 11/167 (6%)

Query: 71  PRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P    EIF  M+  G   + V    + +A  + GL  +A ++F  ++  G  P++ ++  
Sbjct: 295 PAGALEIFQTMQRNGCFPDTVSHNILINAYGRAGLYEDAEKIFKSMQSAGFSPNLKSNML 354

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           ++ AYA AG+ +EA  +   M   G  P+   Y  LI     +         D +  L +
Sbjct: 355 LLSAYARAGRVEEAEELVSAMERDGTKPDTLIYNSLINAYGVSGRHE-----DMEALLAK 409

Query: 188 MV---GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           MV    K  +P+ GTY  + + + +A  +  A  L Q +     VPD
Sbjct: 410 MVKSSSKQTKPDIGTYNTLIQVYAQAGFIPRAEELFQGLARLKLVPD 456



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 68/131 (51%), Gaps = 5/131 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +A S+ G    AL++F  ++  G  PD V+H  +I AY  AG  ++A ++F  M ++G
Sbjct: 285 LMEAYSQGGSPAGALEIFQTMQRNGCFPDTVSHNILINAYGRAGLYEDAEKIFKSMQSAG 344

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            +PN  +  +L+   A A       + +A++ +  M   G +P+   Y ++  A+  + +
Sbjct: 345 FSPNLKSNMLLLSAYARAGR-----VEEAEELVSAMERDGTKPDTLIYNSLINAYGVSGR 399

Query: 213 VDEARGLLQQM 223
            ++   LL +M
Sbjct: 400 HEDMEALLAKM 410



 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/163 (22%), Positives = 77/163 (47%), Gaps = 11/163 (6%)

Query: 75  QEIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           ++IF  M++ G + N    + +  A ++ G   EA +L + ++  G  PD + + ++I A
Sbjct: 334 EKIFKSMQSAGFSPNLKSNMLLLSAYARAGRVEEAEELVSAMERDGTKPDTLIYNSLINA 393

Query: 132 YASAGQGKEALRVFMRMLASG---VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           Y  +G+ ++   +  +M+ S      P+  TY  LI+  A A       +  A++    +
Sbjct: 394 YGVSGRHEDMEALLAKMVKSSSKQTKPDIGTYNTLIQVYAQAG-----FIPRAEELFQGL 448

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
               + P+A T+TA+   + + +   +   +L++M   G   D
Sbjct: 449 ARLKLVPDATTWTALMGGYAKKKLYRKCTSILKKMLESGCRAD 491



 Score = 44.7 bits (104), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 66/153 (43%), Gaps = 20/153 (13%)

Query: 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
           G   +A +LF Q++ +G+ P  +A    +     A + + A  +F  +      PN  TY
Sbjct: 153 GSFEKAEELFVQMQKRGYSPGPLACNTFLHVLEDAKEYRRAEALFRDLEKYECEPNIDTY 212

Query: 161 --AVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR-----PNAGTYTAVFEAFVRAQKV 213
              ++I G A          G+  K   EM+ + MR     PN  T+TA+  AF R    
Sbjct: 213 NRMIVIYGKA----------GEPSK--AEMLYRSMRRAMCPPNICTFTALMNAFARQGLY 260

Query: 214 DEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
            EA     +++   + PD  A   AL++   QG
Sbjct: 261 REAERYFDKLQEFDYKPDHYAYN-ALMEAYSQG 292



 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 35/160 (21%), Positives = 69/160 (43%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNN--AVKMFDALSKDGLTHE-ALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+F +M+  G +    A   F  + +D   +  A  LF  ++     P++  +  +I  
Sbjct: 159 EELFVQMQKRGYSPGPLACNTFLHVLEDAKEYRRAEALFRDLEKYECEPNIDTYNRMIVI 218

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y  AG+  +A  ++  M  +   PN  T+  L+   A        +  +A++Y  ++   
Sbjct: 219 YGKAGEPSKAEMLYRSMRRAMCPPNICTFTALMNAFARQG-----LYREAERYFDKLQEF 273

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             +P+   Y A+ EA+ +      A  + Q M+  G  PD
Sbjct: 274 DYKPDHYAYNALMEAYSQGGSPAGALEIFQTMQRNGCFPD 313


>gi|222641973|gb|EEE70105.1| hypothetical protein OsJ_30115 [Oryza sativa Japonica Group]
          Length = 522

 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 70/138 (50%), Gaps = 5/138 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +AL +     EA +L   ++ +G  PD+V +  VI      G+  +A +VF  M  SG
Sbjct: 210 VLNALCRKKQLREAYRLLCLMRGRGVSPDIVHYNTVIVGVCREGRPLDACKVFGDMRESG 269

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            APNA TY  ++ GL         +   A+ YL +M+GKG+ P+     +V +      K
Sbjct: 270 CAPNAVTYTAVVNGLCVNG-----LYDKAEAYLDDMLGKGLLPHFSVLHSVIKGCCAVGK 324

Query: 213 VDEARGLLQQMKAKGFVP 230
           V+EA G++ +M   G VP
Sbjct: 325 VNEAAGMMTRMLDLGMVP 342



 Score = 70.1 bits (170), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 73/157 (46%), Gaps = 8/157 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +FH++R+  ++ NA     +  +L + G  H A  L  ++  +G   D +A+T V+ A  
Sbjct: 156 LFHRLRSLHVSPNAETYRILTQSLCRRGQVHTAATLLDEMLHRGIPADPLAYTTVLNALC 215

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
              Q +EA R+   M   GV+P+   Y  +I G+    +G      DA K   +M   G 
Sbjct: 216 RKKQLREAYRLLCLMRGRGVSPDIVHYNTVIVGV--CREGRPL---DACKVFGDMRESGC 270

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
            PNA TYTAV          D+A   L  M  KG +P
Sbjct: 271 APNAVTYTAVVNGLCVNGLYDKAEAYLDDMLGKGLLP 307



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 63/129 (48%), Gaps = 8/129 (6%)

Query: 106 ALQLFAQIKDKGHMPD---VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAV 162
           AL L   +  +  +P+   + +H  +IEA   +G    ++ +F R+ +  V+PNA TY +
Sbjct: 115 ALHLLRDVSTRLPLPEPLVLASHNLLIEAATRSGHLAVSISLFHRLRSLHVSPNAETYRI 174

Query: 163 LIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
           L + L          +  A   L EM+ +G+  +   YT V  A  R +++ EA  LL  
Sbjct: 175 LTQSLCRRGQ-----VHTAATLLDEMLHRGIPADPLAYTTVLNALCRKKQLREAYRLLCL 229

Query: 223 MKAKGFVPD 231
           M+ +G  PD
Sbjct: 230 MRGRGVSPD 238



 Score = 45.4 bits (106), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 3/106 (2%)

Query: 71  PRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P +  ++F  MR  G   NAV    + + L  +GL  +A      +  KG +P      +
Sbjct: 255 PLDACKVFGDMRESGCAPNAVTYTAVVNGLCVNGLYDKAEAYLDDMLGKGLLPHFSVLHS 314

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADG 173
           VI+   + G+  EA  +  RML  G+ P+A T++ +I+ + +  D 
Sbjct: 315 VIKGCCAVGKVNEAAGMMTRMLDLGMVPHAETWSSVIRSVCSDEDN 360


>gi|357439849|ref|XP_003590202.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479250|gb|AES60453.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 772

 Score = 80.1 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 48/160 (30%), Positives = 82/160 (51%), Gaps = 8/160 (5%)

Query: 77  IFHKMRTEGLTNNAVK--MF-DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           I + M  +G+  N V   MF +   K+G   EA +LF  ++ KG +P+++ +  +I+AY 
Sbjct: 449 ILNSMVEKGVKPNVVTFTMFIEIYCKEGNLAEAERLFRDMEKKGEVPNIITYNTLIDAYC 508

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
              + K+A ++   M+  G+ P+ YTY+ LI G           + +A K   EM  KG+
Sbjct: 509 KKEKVKQAHKIKSEMINKGLLPDLYTYSSLIHGECIVGR-----VDEALKLFNEMRLKGI 563

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK 233
             N  TYT++     +  + DEA  L  +M   G +PD++
Sbjct: 564 TRNVATYTSMISGLSKEGRADEAFKLYDEMMKIGLIPDDR 603



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 41/123 (33%), Positives = 57/123 (46%), Gaps = 5/123 (4%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA  +   + +KG  P+VV  T  IE Y   G   EA R+F  M   G  PN  TY  LI
Sbjct: 445 EAKCILNSMVEKGVKPNVVTFTMFIEIYCKEGNLAEAERLFRDMEKKGEVPNIITYNTLI 504

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
                      + +  A K   EM+ KG+ P+  TY+++        +VDEA  L  +M+
Sbjct: 505 DAYC-----KKEKVKQAHKIKSEMINKGLLPDLYTYSSLIHGECIVGRVDEALKLFNEMR 559

Query: 225 AKG 227
            KG
Sbjct: 560 LKG 562



 Score = 64.3 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 46/165 (27%), Positives = 73/165 (44%), Gaps = 8/165 (4%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D + + EI   M  E +  +      +    S  G   EA ++F ++++K    DV  ++
Sbjct: 267 DRKGVDEILKLMEKEQVVFSVATYSILIQWYSSSGDIEEAEKIFEEMREKNIEMDVYVYS 326

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
           ++I      G  K A  +F  M    + PNA+TY  LI G+  A    A     A+  L+
Sbjct: 327 SMISWSRRLGNMKRAFALFDEMSQRDIVPNAHTYGALIGGVCKAGQMEA-----AEILLL 381

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           EM  KG+  N   +    + + R  K+DEA  L   M+ KG   D
Sbjct: 382 EMQSKGVDLNLVIFNTTMDGYCRRGKMDEALRLQAIMEKKGINAD 426



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/158 (27%), Positives = 73/158 (46%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M    +  NA     +   + K G    A  L  +++ KG   ++V     ++ Y 
Sbjct: 344 LFDEMSQRDIVPNAHTYGALIGGVCKAGQMEAAEILLLEMQSKGVDLNLVIFNTTMDGYC 403

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G+  EALR+   M   G+  + +TY +L  GL      +     +A+  L  MV KG+
Sbjct: 404 RRGKMDEALRLQAIMEKKGINADVFTYNILANGLCKLHRYD-----EAKCILNSMVEKGV 458

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +PN  T+T   E + +   + EA  L + M+ KG VP+
Sbjct: 459 KPNVVTFTMFIEIYCKEGNLAEAERLFRDMEKKGEVPN 496



 Score = 43.1 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 69/159 (43%), Gaps = 10/159 (6%)

Query: 78  FHKM----RTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHM-PDVVAHTAVIEAY 132
           FH+M    + E    +   + D L + G   +A +L  ++  KG + P+V  +  ++ AY
Sbjct: 203 FHRMVESNKFEIRVQSLTLVIDVLCRRGEVEKAKELMDEMVGKGIVKPNVFTYNTLLNAY 262

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
                 K    +   M    V  +  TY++LI+  +++ D     + +A+K   EM  K 
Sbjct: 263 VGRKDRKGVDEILKLMEKEQVVFSVATYSILIQWYSSSGD-----IEEAEKIFEEMREKN 317

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +  +   Y+++     R   +  A  L  +M  +  VP+
Sbjct: 318 IEMDVYVYSSMISWSRRLGNMKRAFALFDEMSQRDIVPN 356



 Score = 40.8 bits (94), Expect = 0.59,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 36/64 (56%)

Query: 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
           G   EAL+LF +++ KG   +V  +T++I   +  G+  EA +++  M+  G+ P+   +
Sbjct: 546 GRVDEALKLFNEMRLKGITRNVATYTSMISGLSKEGRADEAFKLYDEMMKIGLIPDDRVF 605

Query: 161 AVLI 164
             L+
Sbjct: 606 TSLV 609



 Score = 38.1 bits (87), Expect = 3.9,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 3/60 (5%)

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F++MR +G+T N      M   LSK+G   EA +L+ ++   G +PD    T+++ ++
Sbjct: 553 KLFNEMRLKGITRNVATYTSMISGLSKEGRADEAFKLYDEMMKIGLIPDDRVFTSLVGSF 612



 Score = 37.4 bits (85), Expect = 6.3,   Method: Composition-based stats.
 Identities = 32/136 (23%), Positives = 66/136 (48%), Gaps = 12/136 (8%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +F   S + L  E ++++  +++KG + +  +   ++ A    G+    +R F RM+ S 
Sbjct: 151 LFRVCSDNRLFDETIRVYDYVEEKGLVIEERSCFVLLLALKRCGEVDFCVRFFHRMVESN 210

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKI--LGDAQKYLMEMVGKGM-RPNAGTYTAVFEAFVR 209
                  + + ++ L    D   +   +  A++ + EMVGKG+ +PN  TY  +  A+V 
Sbjct: 211 ------KFEIRVQSLTLVIDVLCRRGEVEKAKELMDEMVGKGIVKPNVFTYNTLLNAYVG 264

Query: 210 AQK---VDEARGLLQQ 222
            +    VDE   L+++
Sbjct: 265 RKDRKGVDEILKLMEK 280


>gi|356513957|ref|XP_003525674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g40400-like [Glycine max]
          Length = 626

 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 79/163 (48%), Gaps = 8/163 (4%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           ++ +M   G+  NA     M   L KDG T +  +   +++++G  PD+V +  ++ +Y 
Sbjct: 235 VYEEMGRLGIHRNAYTFNIMTHVLCKDGDTDKVTRFLDKMEEEGFEPDLVTYNTLVNSYC 294

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
              + ++A  ++  M   GV PN  T+ VL+ GL    +G  K   +A +   +MV +G+
Sbjct: 295 KKRRLEDAFYLYKIMYIRGVMPNLITHTVLMNGL--CEEGKVK---EAHQLFHQMVHRGI 349

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK 236
            P+  +Y  +   + R  K+   R LL +M   G  PD    +
Sbjct: 350 DPDVVSYNTLVSGYCREGKMQMCRSLLHEMIGNGICPDSVTCR 392



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/196 (22%), Positives = 82/196 (41%), Gaps = 40/196 (20%)

Query: 72  RNLQEIFHK---MRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAH 125
           R L++ F+    M   G+  N +    + + L ++G   EA QLF Q+  +G  PDVV++
Sbjct: 297 RRLEDAFYLYKIMYIRGVMPNLITHTVLMNGLCEEGKVKEAHQLFHQMVHRGIDPDVVSY 356

Query: 126 TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN----------- 174
             ++  Y   G+ +    +   M+ +G+ P++ T  ++++G   A DG            
Sbjct: 357 NTLVSGYCREGKMQMCRSLLHEMIGNGICPDSVTCRLIVEGF--ARDGKLLSALNTVVEL 414

Query: 175 ----AKILGD-----------------AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV 213
                KI  D                 A+ +L+ +   G  P   TY  + E+  +   V
Sbjct: 415 KRFRIKIPEDLYDYLIVALCIEGRPFAARSFLLRISQDGYMPKINTYNKLVESLCKFNNV 474

Query: 214 DEARGLLQQMKAKGFV 229
           +EA  L  +M  +  +
Sbjct: 475 EEALILKSEMVKRSMI 490



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 78/171 (45%), Gaps = 11/171 (6%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKD-KGHMPDVVAHTAVIE 130
           + + H+M   G+  ++V    + +  ++DG    AL    ++K  +  +P+ + +  +I 
Sbjct: 373 RSLLHEMIGNGICPDSVTCRLIVEGFARDGKLLSALNTVVELKRFRIKIPEDL-YDYLIV 431

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
           A    G+   A    +R+   G  P   TY  L++ L    +    ++  +     EMV 
Sbjct: 432 ALCIEGRPFAARSFLLRISQDGYMPKINTYNKLVESLCKFNNVEEALILKS-----EMVK 486

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           + M  N   Y AV     R  +  EA GLL++M + G +PD + +  ALI+
Sbjct: 487 RSMILNLVAYRAVISCLCRVNRTLEAEGLLEEMVSSGILPDVE-ISRALIN 536



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/139 (20%), Positives = 64/139 (46%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +  A  K G+  + L  F +  +   +P+V+A   ++   +      +   V+  M   G
Sbjct: 184 LIKAYVKAGMVEKGLATFRRNIEACFIPNVIACNCLLSGLSRFNYIGQCWAVYEEMGRLG 243

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +  NAYT+ ++   L    D +        ++L +M  +G  P+  TY  +  ++ + ++
Sbjct: 244 IHRNAYTFNIMTHVLCKDGDTDK-----VTRFLDKMEEEGFEPDLVTYNTLVNSYCKKRR 298

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +++A  L + M  +G +P+
Sbjct: 299 LEDAFYLYKIMYIRGVMPN 317



 Score = 45.1 bits (105), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 5/126 (3%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
           AL  +G    A     +I   G+MP +  +  ++E+       +EAL +   M+   +  
Sbjct: 432 ALCIEGRPFAARSFLLRISQDGYMPKINTYNKLVESLCKFNNVEEALILKSEMVKRSMIL 491

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           N   Y  +I  L      N  +  +A+  L EMV  G+ P+     A+   +    KVD+
Sbjct: 492 NLVAYRAVISCLCRV---NRTL--EAEGLLEEMVSSGILPDVEISRALINGYCEENKVDK 546

Query: 216 ARGLLQ 221
           A  LL+
Sbjct: 547 AVSLLK 552


>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
            chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 70/139 (50%), Gaps = 5/139 (3%)

Query: 93   MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
            + D L+K G   EA++LF ++ D G  P+      +I  Y   G  + A ++F RM+  G
Sbjct: 899  LIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEG 958

Query: 153  VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            + P+  +Y +L+  L  A       + +A  Y  E+   G+ P+   Y  +     ++Q+
Sbjct: 959  IRPDLKSYTILVDCLCLAGR-----VDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQR 1013

Query: 213  VDEARGLLQQMKAKGFVPD 231
            ++EA  L  +M+ +G VPD
Sbjct: 1014 MEEALALYNEMRNRGIVPD 1032



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 82/170 (48%), Gaps = 8/170 (4%)

Query: 73  NLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           N +E+F KM+  G   + V    + D  +  G      + ++Q++  G+MPDVV  T ++
Sbjct: 315 NAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILV 374

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
           +    A    EA   F  M   G+ PN +TY  LI GL  A       + DA K L  M 
Sbjct: 375 DVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGR-----IEDALKLLGTME 429

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
             G++P A TY    + F ++ +  +A    ++MKAKG VP+  A   +L
Sbjct: 430 SVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASL 479



 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 78/161 (48%), Gaps = 12/161 (7%)

Query: 76  EIFHKMRTEGL-----TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           E++ +M +EGL     T +A+ +  AL K   +   + L  +++D G  P+V   T  I 
Sbjct: 213 EVYRRMVSEGLKPSLKTYSALMV--ALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIR 270

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
               AG+  EA  +F RM   G  P+  TY VLI  L      NA  L +A++  ++M  
Sbjct: 271 VLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALC-----NAGQLENAKELFVKMKA 325

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            G +P+   Y  + + F     +D  +    QM+A G++PD
Sbjct: 326 NGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPD 366



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 70/136 (51%), Gaps = 5/136 (3%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L + G   EA ++F ++ D+G  PD+V +T +I+A  +AGQ + A  +F++M A+G  P
Sbjct: 271 VLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKP 330

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +   Y  L+       D     L   +++  +M   G  P+  T+T + +   +A+  DE
Sbjct: 331 DQVIYITLLDKFNDFGD-----LDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDE 385

Query: 216 ARGLLQQMKAKGFVPD 231
           A      M+ +G +P+
Sbjct: 386 AFATFDVMRKQGILPN 401



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 84/174 (48%), Gaps = 9/174 (5%)

Query: 72  RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R +  + +KMR  G   NA     +   L + G   EAL+++ ++  +G  P +  ++A+
Sbjct: 174 RQMTTVLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSAL 233

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           + A       +  + +   M   G+ PN YT+ + I+ L     G A  + +A +    M
Sbjct: 234 MVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVL-----GRAGKIDEAYEIFRRM 288

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDK 242
             +G  P+  TYT + +A   A +++ A+ L  +MKA G  PD+  +   L+DK
Sbjct: 289 DDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQ-VIYITLLDK 341



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 5/141 (3%)

Query: 91  VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           + +F ALS  G   +   +  +++  G + +  ++  +I     +G   EAL V+ RM++
Sbjct: 161 LTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVS 220

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
            G+ P+  TY+ L+  L    D    ++      L EM   G+RPN  T+T       RA
Sbjct: 221 EGLKPSLKTYSALMVALGKKRDSEMVMV-----LLKEMEDLGLRPNVYTFTICIRVLGRA 275

Query: 211 QKVDEARGLLQQMKAKGFVPD 231
            K+DEA  + ++M  +G  PD
Sbjct: 276 GKIDEAYEIFRRMDDEGCGPD 296



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 76/165 (46%), Gaps = 8/165 (4%)

Query: 70   DPRNLQEIFHKMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
            D     ++F +M  EG+     +   + D L   G   EAL  F ++K  G  PD +A+ 
Sbjct: 943  DTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYN 1002

Query: 127  AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
             +I     + + +EAL ++  M   G+ P+ YTY  L+  L     G A ++  A++   
Sbjct: 1003 RIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNL-----GLAGMVEQAKRMYE 1057

Query: 187  EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            E+   G+ P+  TY A+   +  ++  + A  + + M   G  P+
Sbjct: 1058 ELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPN 1102



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 8/163 (4%)

Query: 72  RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R  + +F+ +R  GL  ++V    M    SK G   EA+ L +++   G  PDV+   ++
Sbjct: 489 REAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSL 548

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I++   AG+  EA ++F RM    ++P   TY  L+ GL     G    +  A +    M
Sbjct: 549 IDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGL-----GKEGRVQKAIELFESM 603

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + K   PN  ++  + + F +  +V+ A  +  +M      PD
Sbjct: 604 IEKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPD 646



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 72/136 (52%), Gaps = 5/136 (3%)

Query: 95  DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           D   K G T +A++ F ++K KG +P++VA  A + + A  G+ +EA  +F  +  +G+A
Sbjct: 445 DYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLA 504

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
           P++ TY +++K  +         + +A   L EM+  G  P+     ++ ++  +A +VD
Sbjct: 505 PDSVTYNMMMKCYSKVGQ-----VDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGRVD 559

Query: 215 EARGLLQQMKAKGFVP 230
           EA  +  +MK     P
Sbjct: 560 EAWQMFDRMKDMKLSP 575



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 79/191 (41%), Gaps = 37/191 (19%)

Query: 76  EIFHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           ++F  M+  G   +A   F+ L     K G   E  +L+ ++  +   PD + +  VI +
Sbjct: 809 DLFKDMKNVGCAPDAFT-FNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISS 867

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA-------------------- 171
            A +    +AL  F  +++S   P   TY  LI GLA                       
Sbjct: 868 LAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPN 927

Query: 172 --------DGNAKILGD---AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
                   +G  KI GD   A +    MV +G+RP+  +YT + +    A +VDEA    
Sbjct: 928 CAIFNILINGYGKI-GDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYF 986

Query: 221 QQMKAKGFVPD 231
            ++K+ G  PD
Sbjct: 987 NELKSTGLDPD 997



 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 73/165 (44%), Gaps = 8/165 (4%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D    +E + +M  +G   + V    + D L K     EA   F  ++ +G +P++  + 
Sbjct: 347 DLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYN 406

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
            +I     AG+ ++AL++   M + GV P AYTY + I     + +      G A +   
Sbjct: 407 TLICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGET-----GKAVETFE 461

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +M  KG+ PN     A   +     ++ EA+ +   ++  G  PD
Sbjct: 462 KMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPD 506



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 67/143 (46%), Gaps = 6/143 (4%)

Query: 103 THEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAV 162
           T +A  LF  +K+ G  PD      ++  +  +G+  E   ++  M++    P+A TY +
Sbjct: 804 TEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNI 863

Query: 163 LIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
           +I  LA + +     L  A  +  ++V    RP   TY  + +   +  +++EA  L ++
Sbjct: 864 VISSLAKSNN-----LDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEE 918

Query: 223 MKAKGFVPDEKAVKEALIDKRGQ 245
           M   G  P+  A+   LI+  G+
Sbjct: 919 MSDYGCKPN-CAIFNILINGYGK 940



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 67/155 (43%), Gaps = 8/155 (5%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D+L K G   EA Q+F ++KD    P VV +  ++      G+ ++A+ +F  M+   
Sbjct: 548 LIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEKK 607

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            +PN  ++  L+       +        A K   +M     +P+  TY  V    ++  K
Sbjct: 608 CSPNTISFNTLLDCFCKNDEVEL-----ALKMFSKMTVMDCKPDVLTYNTVIYGLIKENK 662

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEAL--IDKRGQ 245
           V+ A     Q+K K   PD   +   L  + K GQ
Sbjct: 663 VNHAFWFFHQLK-KSMHPDHVTICTLLPGLVKCGQ 696



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/144 (20%), Positives = 63/144 (43%), Gaps = 9/144 (6%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F +M+   L+   V    +   L K+G   +A++LF  + +K   P+ ++   +++ +
Sbjct: 563 QMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTISFNTLLDCF 622

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               + + AL++F +M      P+  TY  +I GL      N         +    + K 
Sbjct: 623 CKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAF------WFFHQLKKS 676

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEA 216
           M P+  T   +    V+  ++ +A
Sbjct: 677 MHPDHVTICTLLPGLVKCGQIGDA 700



 Score = 45.4 bits (106), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 6/126 (4%)

Query: 106 ALQLFAQIKDK-GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           A Q+F +   K G  P + ++  +I         ++A  +F  M   G AP+A+T+ +L+
Sbjct: 771 AYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLL 830

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
                A  G +  + +  +   EM+ +  +P+A TY  V  +  ++  +D+A      + 
Sbjct: 831 -----AVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLV 885

Query: 225 AKGFVP 230
           +  F P
Sbjct: 886 SSDFRP 891



 Score = 44.7 bits (104), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 68/139 (48%), Gaps = 12/139 (8%)

Query: 34   SLSSSSDQPTKKYVNTKSK-LPPPYDPFKKVVDEEPTDPRNLQE---IFHKMRTEGL--- 86
             L+   D+    +   KS  L P +  + ++++      R ++E   ++++MR  G+   
Sbjct: 974  CLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQR-MEEALALYNEMRNRGIVPD 1032

Query: 87   --TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRV 144
              T N++ +   L+  G+  +A +++ +++  G  PDV  + A+I  Y+ +   + A  V
Sbjct: 1033 LYTYNSLMLNLGLA--GMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAYTV 1090

Query: 145  FMRMLASGVAPNAYTYAVL 163
            +  M+  G  PN  TYA L
Sbjct: 1091 YKNMMVDGCNPNIGTYAQL 1109


>gi|414591641|tpg|DAA42212.1| TPA: hypothetical protein ZEAMMB73_141452 [Zea mays]
          Length = 472

 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 82/174 (47%), Gaps = 13/174 (7%)

Query: 77  IFHKMRTEGLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +MR   +  + V +     +L K G   EA  +F  +  KG  PDV ++  ++  YA
Sbjct: 277 VFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYA 336

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
           + G   +   +F  ML  G+AP+ YT+ V IK  A     N  +L  A     EM   G+
Sbjct: 337 TKGCLVDMTDLFDLMLGDGIAPDFYTFNVQIKAYA-----NCGMLDKAMIIFNEMRDHGV 391

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGF 247
           +P+  TY  V  A  R  K+D+A     QM  +G  PD+ A    LI    QGF
Sbjct: 392 KPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAY-NCLI----QGF 440



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 67/141 (47%), Gaps = 7/141 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHM--PDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           +  +L   G + +A  L   + + G +  PDVVA+  VI+ +   G   +A  +F  M+ 
Sbjct: 154 LLKSLCNQGKSGQADNLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQ 213

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
            G+ P+  TY  ++  L       A+ +  A+ +L +MV K + PN  TY  +   +   
Sbjct: 214 RGIPPDLVTYNSVVHALC-----KARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSST 268

Query: 211 QKVDEARGLLQQMKAKGFVPD 231
            +  EA  + ++M+    +PD
Sbjct: 269 GQWKEAVRVFKEMRRHSILPD 289



 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   K+G  ++A  LF ++  +G  PD+V + +V+ A   A    +A     +M+   
Sbjct: 191 VIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKR 250

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V PN +TY  LI G ++   G  K   +A +   EM    + P+  T + +  +  +  K
Sbjct: 251 VLPNNWTYNNLIYGYSST--GQWK---EAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGK 305

Query: 213 VDEARGLLQQMKAKGFVPD 231
           + EAR +   M  KG  PD
Sbjct: 306 IKEARDVFDTMAMKGQNPD 324



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 72/173 (41%), Gaps = 33/173 (19%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFM-RMLAS 151
           + D  ++      AL  F Q+   G   D +  + +++ +  A +  EAL + + R    
Sbjct: 83  LMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEALDILLHRTPEL 142

Query: 152 GVAPNAYTYAVLIKGLA-----AAADGNAKIL------------------------GDAQ 182
           G  P+ ++Y +L+K L        AD   +++                        GD  
Sbjct: 143 GCVPDVFSYNILLKSLCNQGKSGQADNLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVN 202

Query: 183 K---YLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           K      EMV +G+ P+  TY +V  A  +A+ +D+A   L+QM  K  +P+ 
Sbjct: 203 KACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNN 255


>gi|297839331|ref|XP_002887547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333388|gb|EFH63806.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 763

 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 69/139 (49%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K G   +A  L   +  KG+ PD+     +I  Y++  + + AL +   M+ +G
Sbjct: 432 LVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMMDNG 491

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V P+ YTY  L+ GL   +        D  +    MV KG  PN  T+  + E+  R  K
Sbjct: 492 VDPDVYTYNSLLNGLCKTSKYE-----DVMETYKTMVEKGCAPNLFTFNILLESLCRYHK 546

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +D+A GLL++MK K   PD
Sbjct: 547 LDKALGLLEEMKNKSVNPD 565



 Score = 73.6 bits (179), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 83/169 (49%), Gaps = 9/169 (5%)

Query: 76  EIFHKMRTEGLT---NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F KM   G++   +   K+   L K G   E  +L  ++  +G +P++  +   I+  
Sbjct: 202 ELFGKMLASGVSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNFFIQGL 261

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+   A+R+  R++  G  P+  TY  LI GL      N+K   +A+ YL ++V +G
Sbjct: 262 CQKGELDAAVRMVGRLIDQGPKPDVVTYNYLIYGLCK----NSK-FQEAEVYLGKLVNEG 316

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           + P++ TY  +   + +   V  A  +L      GFVPDE   + +LID
Sbjct: 317 LEPDSFTYNTLIAGYCKGGMVQLAERILVNAVFNGFVPDEFTYR-SLID 364



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 8/155 (5%)

Query: 80  KMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           K+  EGL  ++     +     K G+   A ++       G +PD   + ++I+     G
Sbjct: 311 KLVNEGLEPDSFTYNTLIAGYCKGGMVQLAERILVNAVFNGFVPDEFTYRSLIDGLCHEG 370

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196
           +   AL +F   L  G+ PN   Y  LIKGL+     N  ++ +A +   EM  KG+ P 
Sbjct: 371 ETNRALALFNEALGKGIKPNVILYNTLIKGLS-----NQGLILEAAQLASEMSEKGLIPE 425

Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             T+  +     +   V +A GL++ M +KG+ PD
Sbjct: 426 VQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPD 460



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 5/136 (3%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+    EA     ++ ++G  PD   +  +I  Y   G  + A R+ +  + +G  P
Sbjct: 295 GLCKNSKFQEAEVYLGKLVNEGLEPDSFTYNTLIAGYCKGGMVQLAERILVNAVFNGFVP 354

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           + +TY  LI GL    + N      A     E +GKG++PN   Y  + +       + E
Sbjct: 355 DEFTYRSLIDGLCHEGETNR-----ALALFNEALGKGIKPNVILYNTLIKGLSNQGLILE 409

Query: 216 ARGLLQQMKAKGFVPD 231
           A  L  +M  KG +P+
Sbjct: 410 AAQLASEMSEKGLIPE 425



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 73/160 (45%), Gaps = 11/160 (6%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVA--HTAVIEA 131
           +  +M+ + +  +AV    + D   K+G    A  LF ++++  +M       +  +I A
Sbjct: 553 LLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEV-YMVSCSTPTYNIIIHA 611

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +        A ++F  M+   + P+ YTY +++ G      GN  +     K+L+EM+  
Sbjct: 612 FTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKT--GNVDL---GYKFLLEMMEN 666

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G  P+  T   V        +V EA G++ +M  KG VP+
Sbjct: 667 GFIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQKGLVPE 706



 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 69/161 (42%), Gaps = 15/161 (9%)

Query: 74  LQEIFHKMR-------TEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           ++E+   MR        EG+   A+K +    + G   EA+ +F ++      P V ++ 
Sbjct: 59  MEEVLVDMRQNVGNHMLEGVYVGAMKNY---GRKGKVQEAVNVFERMDFYDCEPTVFSYN 115

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
           A++     +G   +A +V+MRM   G+ P+ Y++ + +K     +  +A     A + L 
Sbjct: 116 AIMSILVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCRTSRPHA-----ALRLLN 170

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
            M  +G   N   Y  V   F      DE   L  +M A G
Sbjct: 171 NMSSQGCEMNVVAYCTVVGGFYEENFKDEGYELFGKMLASG 211



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 69/166 (41%), Gaps = 15/166 (9%)

Query: 72  RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
            ++ E +  M  +G   N      + ++L +     +AL L  ++K+K   PD V    +
Sbjct: 513 EDVMETYKTMVEKGCAPNLFTFNILLESLCRYHKLDKALGLLEEMKNKSVNPDAVTFGTL 572

Query: 129 IEAYASAGQGKEALRVFMRM----LASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKY 184
           I+ +   G    A  +F +M    + S   P   TY ++I       +        A+K 
Sbjct: 573 IDGFCKNGDLDGAYTLFRKMEEVYMVSCSTP---TYNIIIHAFTEKLNVTM-----AEKL 624

Query: 185 LMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
             EMV + + P+  TY  + + F +   VD     L +M   GF+P
Sbjct: 625 FQEMVDRCLGPDGYTYRLMVDGFCKTGNVDLGYKFLLEMMENGFIP 670


>gi|224085950|ref|XP_002307751.1| predicted protein [Populus trichocarpa]
 gi|222857200|gb|EEE94747.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 69/139 (49%), Gaps = 6/139 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L ++    +A + F  +KDK   PDV+ +T ++  +  AG   EA RVF  M  +G
Sbjct: 170 LISILCRERRASQAQEFFDSLKDKFE-PDVIVYTNLVRGWCRAGNISEAERVFGEMKVAG 228

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN YTY+++I  L          +  A     EM+  G +PN+ TY ++    V+A +
Sbjct: 229 IKPNVYTYSIVIDSLCRCGQ-----ITRAHDIFAEMLDAGCQPNSITYNSLMRIHVKAGR 283

Query: 213 VDEARGLLQQMKAKGFVPD 231
            ++   +  QMK  G  PD
Sbjct: 284 TEKVLQVYNQMKRLGCEPD 302



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 76/153 (49%), Gaps = 8/153 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +F +M+  G+  N      + D+L + G    A  +FA++ D G  P+ + + +++  
Sbjct: 218 ERVFGEMKVAGIKPNVYTYSIVIDSLCRCGQITRAHDIFAEMLDAGCQPNSITYNSLMRI 277

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +  AG+ ++ L+V+ +M   G  P+  TY  LI+      D N   L DA K +  M  K
Sbjct: 278 HVKAGRTEKVLQVYNQMKRLGCEPDTVTYNFLIE--THCKDEN---LEDAIKVIGLMAKK 332

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           G  PNA T+  +F    +   V+ A  + ++MK
Sbjct: 333 GCAPNASTFNTLFGCIAKLGDVNAAHRMYKKMK 365



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 76/176 (43%), Gaps = 10/176 (5%)

Query: 75  QEIFHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
            +IF +M   G   N++  +++L     K G T + LQ++ Q+K  G  PD V +  +IE
Sbjct: 253 HDIFAEMLDAGCQPNSIT-YNSLMRIHVKAGRTEKVLQVYNQMKRLGCEPDTVTYNFLIE 311

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
            +      ++A++V   M   G APNA T+  L   +A   D NA     A +   +M  
Sbjct: 312 THCKDENLEDAIKVIGLMAKKGCAPNASTFNTLFGCIAKLGDVNA-----AHRMYKKMKE 366

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
                N  TY  + + FV ++  D    L  +M      P+    K  +    G G
Sbjct: 367 LNCEANTVTYNTLMKMFVASKSTDMVLKLKTEMDENKIEPNVNTYKVLITMYCGMG 422



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 31/138 (22%), Positives = 67/138 (48%), Gaps = 6/138 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +F  ++K G  + A +++ ++K+     + V +  +++ + ++      L++   M  + 
Sbjct: 344 LFGCIAKLGDVNAAHRMYKKMKELNCEANTVTYNTLMKMFVASKSTDMVLKLKTEMDENK 403

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG-KGMRPNAGTYTAVFEAFVRAQ 211
           + PN  TY VLI         N     +A K+  EM+  K +RP+   Y  V +   +A 
Sbjct: 404 IEPNVNTYKVLITMYCGMGHWN-----NAYKFFREMIDEKCLRPSLPVYDMVLQQLRKAG 458

Query: 212 KVDEARGLLQQMKAKGFV 229
           ++ +   L+++M  +GFV
Sbjct: 459 QLKKHEELVEKMVDRGFV 476



 Score = 42.7 bits (99), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 8/113 (7%)

Query: 121 DVVAHTAVI--EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKIL 178
           DV   T +I    Y  AG   EA+  F RM      P+   +++LI  L        +  
Sbjct: 126 DVTVETFLILMRRYVRAGLAAEAIHAFNRMEDYNCKPDKIAFSILISILC-----RERRA 180

Query: 179 GDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             AQ++   +  K   P+   YT +   + RA  + EA  +  +MK  G  P+
Sbjct: 181 SQAQEFFDSLKDK-FEPDVIVYTNLVRGWCRAGNISEAERVFGEMKVAGIKPN 232


>gi|299473436|emb|CBN77833.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 1139

 Score = 80.1 bits (196), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 88/174 (50%), Gaps = 9/174 (5%)

Query: 71  PRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P    ++F +M   G+T + +    + DA  + G    A Q+F+++   G  P+    +A
Sbjct: 180 PDQALKVFDQMSRYGVTPSVITFNTLIDACGRAGDIDRARQVFSRLSQAGLSPNDRTFSA 239

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           +I ++A  GQ  EA      M A G+ PN  TY+ LI      A G A  L  A + L E
Sbjct: 240 LIHSHAVQGQVDEAFSWLQEMRARGLEPNRVTYSALIN-----ACGRAGQLARAFQTLDE 294

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           M G G+ PN  T+T + +A  + ++++ +  L ++M+ +G VP+      AL+D
Sbjct: 295 MFGTGIEPNVVTWTTLIDACGKGKELEWSFKLFKEMRERGTVPN-GVTCSALMD 347



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 85/175 (48%), Gaps = 9/175 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +  F +M   G+T +      + +A +K G   +AL++F Q+   G  P V+    +I+A
Sbjct: 149 ERFFREMLEAGITPDVQAINSLINAFAKAGSPDQALKVFDQMSRYGVTPSVITFNTLIDA 208

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              AG    A +VF R+  +G++PN  T++ LI   A         + +A  +L EM  +
Sbjct: 209 CGRAGDIDRARQVFSRLSQAGLSPNDRTFSALIHSHAVQGQ-----VDEAFSWLQEMRAR 263

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
           G+ PN  TY+A+  A  RA ++  A   L +M   G  P+       LID  G+G
Sbjct: 264 GLEPNRVTYSALINACGRAGQLARAFQTLDEMFGTGIEPN-VVTWTTLIDACGKG 317



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 100/216 (46%), Gaps = 16/216 (7%)

Query: 24  NTRVNATLQRSLSSSSDQPTKKYVN-TKSKLPPPYDPFKKVVDE--EPTDPRNLQEIFHK 80
           N+ +NA  +   + S DQ  K +   ++  + P    F  ++D      D    +++F +
Sbjct: 168 NSLINAFAK---AGSPDQALKVFDQMSRYGVTPSVITFNTLIDACGRAGDIDRARQVFSR 224

Query: 81  MRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           +   GL+ N  + F AL    +  G   EA     +++ +G  P+ V ++A+I A   AG
Sbjct: 225 LSQAGLSPND-RTFSALIHSHAVQGQVDEAFSWLQEMRARGLEPNRVTYSALINACGRAG 283

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196
           Q   A +    M  +G+ PN  T+  LI      A G  K L  + K   EM  +G  PN
Sbjct: 284 QLARAFQTLDEMFGTGIEPNVVTWTTLID-----ACGKGKELEWSFKLFKEMRERGTVPN 338

Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
             T +A+ +A ++A ++D A  +L+ M   G  P E
Sbjct: 339 GVTCSALMDACLKADELDLAFAVLEHMLDVGIEPTE 374



 Score = 43.5 bits (101), Expect = 0.089,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 10/143 (6%)

Query: 89  NAVKMF-DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMR 147
           N V+MF + +S+  L   A    A  K  G    V A    + A   AG+  + +  +  
Sbjct: 64  NGVEMFLECMSRRRLKLAAATAAASPKQGG----VPACNVFLRALGDAGRIDDCVAAYEA 119

Query: 148 MLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAF 207
           MLA  + P   T++ LI     +  G  + +  A+++  EM+  G+ P+     ++  AF
Sbjct: 120 MLACQLRPTIVTFSTLI-----SRAGACRRVRLAERFFREMLEAGITPDVQAINSLINAF 174

Query: 208 VRAQKVDEARGLLQQMKAKGFVP 230
            +A   D+A  +  QM   G  P
Sbjct: 175 AKAGSPDQALKVFDQMSRYGVTP 197



 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 62/138 (44%), Gaps = 13/138 (9%)

Query: 109  LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRML----ASGVAPNAYTYAVLI 164
            +F +++ +G  PD+ A+ A++   A  G+   AL V   M+      G+ P+A TY  LI
Sbjct: 881  VFQEMRSRGVRPDLRAYNALVNTCADLGEFDRALGVVRLMVDDGEGGGLQPDAVTYTSLI 940

Query: 165  KGLAAAADGNAKILGDAQKYLMEMVGKG------MRPNAGTYTAVFEAFVRAQKVDEARG 218
            K   AAA      + +A++    M  +        RP   TY  +  A V A+    A  
Sbjct: 941  K---AAARAVPPRVEEAEEIFATMQQRTNHFSTFARPTEVTYAHLMRASVMAEDYGRALE 997

Query: 219  LLQQMKAKGFVPDEKAVK 236
            + +Q  + G  P  ++ +
Sbjct: 998  IWRQQLSAGVAPGPRSTR 1015



 Score = 41.6 bits (96), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 57/117 (48%), Gaps = 7/117 (5%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDV--VAHTAVIEAYASAGQGKEALRVFMRMLA 150
           + +A+   G   +A++L  + + +GH  ++  + ++A++ A   A +   A R+   M  
Sbjct: 583 LLNAVDTAGALDKAVELMERSRAEGHGSEINELTYSALLGACGRAKKLARAFRIVQSMRE 642

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAF 207
           +GV P   TY  L++    + D  A +     +    M  +G+RP   +YT++ +A 
Sbjct: 643 TGVKPTEGTYLALMEVCRHSRDSKAAV-----EVFEAMETEGVRPGVRSYTSLLKAI 694


>gi|413926925|gb|AFW66857.1| hypothetical protein ZEAMMB73_570381 [Zea mays]
          Length = 487

 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 70/134 (52%), Gaps = 5/134 (3%)

Query: 98  SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA 157
           S+    +EA Q FA++  +G +P+ + + ++I A   AG   EA ++   M  SG+ P+ 
Sbjct: 237 SRLDYVNEAYQAFAEMTSRGIVPNNITYNSIISALCKAGNMTEAFKLEQNMRQSGLVPDI 296

Query: 158 YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
           YT  +LI GL    +G  K++      L++M   G+ P+  TY  +  A+ RAQ ++ A 
Sbjct: 297 YTSNILIDGL--CREGKLKMV---DNLLLDMCSNGLTPDTVTYNTIINAYCRAQDMNSAM 351

Query: 218 GLLQQMKAKGFVPD 231
             + +M   G  PD
Sbjct: 352 NFMNKMLVAGCEPD 365



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 71/157 (45%), Gaps = 8/157 (5%)

Query: 78  FHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F +M + G+  N +    +  AL K G   EA +L   ++  G +PD+     +I+    
Sbjct: 249 FAEMTSRGIVPNNITYNSIISALCKAGNMTEAFKLEQNMRQSGLVPDIYTSNILIDGLCR 308

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            G+ K    + + M ++G+ P+  TY  +I     A D N+     A  ++ +M+  G  
Sbjct: 309 EGKLKMVDNLLLDMCSNGLTPDTVTYNTIINAYCRAQDMNS-----AMNFMNKMLVAGCE 363

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           P+  TY     +  R   +++A  LL ++ A    P+
Sbjct: 364 PDIFTYNIWMHSLYRNHMLNQAGKLLDELVAVDCSPN 400



 Score = 60.5 bits (145), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 75/183 (40%), Gaps = 16/183 (8%)

Query: 73  NLQEIF---HKMRTEGL-----TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVA 124
           N+ E F     MR  GL     T+N   + D L ++G       L   +   G  PD V 
Sbjct: 276 NMTEAFKLEQNMRQSGLVPDIYTSNI--LIDGLCREGKLKMVDNLLLDMCSNGLTPDTVT 333

Query: 125 HTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKY 184
           +  +I AY  A     A+    +ML +G  P+ +TY + +  L         +L  A K 
Sbjct: 334 YNTIINAYCRAQDMNSAMNFMNKMLVAGCEPDIFTYNIWMHSLY-----RNHMLNQAGKL 388

Query: 185 LMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRG 244
           L E+V     PN+ TY  + +  + +  +D A  L  ++    F P+   +   L     
Sbjct: 389 LDELVAVDCSPNSVTYNTLMDG-ICSDVLDRAMILTGRLIKMAFKPNTITLNVFLSHFCK 447

Query: 245 QGF 247
           QGF
Sbjct: 448 QGF 450



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 68/167 (40%), Gaps = 25/167 (14%)

Query: 84  EGLTNNAVKMFDALSKDGLT-------------------HEALQLFAQIKDKGHMPDVVA 124
           EGL   A +++  ++K GLT                    EA  L   +  KG+     +
Sbjct: 135 EGLHEEASELYRIINKLGLTPSSSTFNYLIMGLCNQVRLDEAQLLLEHMVSKGYCLST-S 193

Query: 125 HTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKY 184
            T  ++AY   G    AL+ +  M    +  +   ++  I G +         + +A + 
Sbjct: 194 FTICLDAYFRDGNAVGALKCWDDMGKIDLQTDFIAFSAYINGRS-----RLDYVNEAYQA 248

Query: 185 LMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             EM  +G+ PN  TY ++  A  +A  + EA  L Q M+  G VPD
Sbjct: 249 FAEMTSRGIVPNNITYNSIISALCKAGNMTEAFKLEQNMRQSGLVPD 295



 Score = 37.0 bits (84), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 32/59 (54%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
           EA +LF Q+   G   + +    +I+ YA +GQ  +A   +  M A G+ P++ T+ ++
Sbjct: 3   EARRLFDQMAQVGIQVNTITFNVLIDGYAKSGQMHQASAAYREMQARGLVPDSCTFNII 61


>gi|297727181|ref|NP_001175954.1| Os09g0532800 [Oryza sativa Japonica Group]
 gi|255679084|dbj|BAH94682.1| Os09g0532800, partial [Oryza sativa Japonica Group]
          Length = 519

 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 70/138 (50%), Gaps = 5/138 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +AL +     EA +L   ++ +G  PD+V +  VI      G+  +A +VF  M  SG
Sbjct: 239 VLNALCRKKQLREAYRLLCLMRGRGVSPDIVHYNTVIVGVCREGRPLDACKVFGDMRESG 298

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            APNA TY  ++ GL         +   A+ YL +M+GKG+ P+     +V +      K
Sbjct: 299 CAPNAVTYTAVVNGLCVNG-----LYDKAEAYLDDMLGKGLLPHFSVLHSVIKGCCAVGK 353

Query: 213 VDEARGLLQQMKAKGFVP 230
           V+EA G++ +M   G VP
Sbjct: 354 VNEAAGMMTRMLDLGMVP 371



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 73/158 (46%), Gaps = 8/158 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
            +FH++R+  ++ NA     +  +L + G  H A  L  ++  +G   D +A+T V+ A 
Sbjct: 184 SLFHRLRSLHVSPNAETYRILTQSLCRRGQVHTAATLLDEMLHRGIPADPLAYTTVLNAL 243

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               Q +EA R+   M   GV+P+   Y  +I G+    +G      DA K   +M   G
Sbjct: 244 CRKKQLREAYRLLCLMRGRGVSPDIVHYNTVIVGV--CREGRPL---DACKVFGDMRESG 298

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
             PNA TYTAV          D+A   L  M  KG +P
Sbjct: 299 CAPNAVTYTAVVNGLCVNGLYDKAEAYLDDMLGKGLLP 336



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 63/129 (48%), Gaps = 8/129 (6%)

Query: 106 ALQLFAQIKDKGHMPD---VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAV 162
           AL L   +  +  +P+   + +H  +IEA   +G    ++ +F R+ +  V+PNA TY +
Sbjct: 144 ALHLLRDVSTRLPLPEPLVLASHNLLIEAATRSGHLAVSISLFHRLRSLHVSPNAETYRI 203

Query: 163 LIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
           L + L          +  A   L EM+ +G+  +   YT V  A  R +++ EA  LL  
Sbjct: 204 LTQSLCRRGQ-----VHTAATLLDEMLHRGIPADPLAYTTVLNALCRKKQLREAYRLLCL 258

Query: 223 MKAKGFVPD 231
           M+ +G  PD
Sbjct: 259 MRGRGVSPD 267



 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 3/116 (2%)

Query: 71  PRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P +  ++F  MR  G   NAV    + + L  +GL  +A      +  KG +P      +
Sbjct: 284 PLDACKVFGDMRESGCAPNAVTYTAVVNGLCVNGLYDKAEAYLDDMLGKGLLPHFSVLHS 343

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQK 183
           VI+   + G+  EA  +  RML  G+ P+A T++ +I+ + +  D    +L    K
Sbjct: 344 VIKGCCAVGKVNEAAGMMTRMLDLGMVPHAETWSSVIRSVCSDEDNVEVVLLQVMK 399


>gi|115487378|ref|NP_001066176.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|77553036|gb|ABA95832.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113648683|dbj|BAF29195.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|125535802|gb|EAY82290.1| hypothetical protein OsI_37500 [Oryza sativa Indica Group]
 gi|125578525|gb|EAZ19671.1| hypothetical protein OsJ_35247 [Oryza sativa Japonica Group]
          Length = 716

 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 80/164 (48%), Gaps = 9/164 (5%)

Query: 81  MRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ 137
           M + G++++ V      D L K G   +A  L+ ++   G  PD + +T +I A+   G+
Sbjct: 503 MISRGISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYTCLIHAHCERGR 562

Query: 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA 197
            +EA  +F  ML SG+ P+A TY V I   A    GN   L  A  +  +M+ +G+RPN 
Sbjct: 563 LREARDIFDGMLVSGLPPSAVTYTVFIH--AYCRRGN---LYSAYGWFQKMLEEGVRPNE 617

Query: 198 GTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
            TY  +  A  R  + + A     +M  +G  P+ K     LID
Sbjct: 618 VTYNVLIHALCRMGRTNLAYQHFHEMLERGLSPN-KYTYTLLID 660



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 77/155 (49%), Gaps = 8/155 (5%)

Query: 80  KMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           +M  EG+    V    +   + + G    A   F +++  G +PD++ + ++I  Y  AG
Sbjct: 327 EMENEGIVPTVVTYNTIIHGMFRSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCKAG 386

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196
             KEAL +F  +  +G+AP+  TY +L+ G     D     L +A+++  EMV +G +P+
Sbjct: 387 NLKEALWLFGDLKRAGLAPSVLTYNILLDGYCRLGD-----LEEARRFKQEMVEQGCQPD 441

Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             TYT +     + + +   R    +M +KG  PD
Sbjct: 442 VSTYTILMNGSRKVRNLAMVREFFDEMLSKGLQPD 476



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 70/159 (44%), Gaps = 8/159 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           ++ KM ++GL  + +    +  A  + G   EA  +F  +   G  P  V +T  I AY 
Sbjct: 534 LWMKMVSDGLQPDCITYTCLIHAHCERGRLREARDIFDGMLVSGLPPSAVTYTVFIHAYC 593

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G    A   F +ML  GV PN  TY VLI  L      N      A ++  EM+ +G+
Sbjct: 594 RRGNLYSAYGWFQKMLEEGVRPNEVTYNVLIHALCRMGRTNL-----AYQHFHEMLERGL 648

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
            PN  TYT + +   +    +EA  L  +M   G  PD 
Sbjct: 649 SPNKYTYTLLIDGNCKEGNWEEAIRLYSEMHQHGIHPDH 687



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 11/167 (6%)

Query: 72  RNL---QEIFHKMRTEGLTNNAVKMFDALSKD---GLTHEALQLFAQIKDKGHMPDVVAH 125
           RNL   +E F +M ++GL  +       +S +   G T EA QL   +  +G   D V +
Sbjct: 456 RNLAMVREFFDEMLSKGLQPDCFAYNTRISAELILGSTSEAFQLTEVMISRGISSDTVTY 515

Query: 126 TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185
              ++    +G  K+A  ++M+M++ G+ P+  TY  LI      A      L +A+   
Sbjct: 516 NIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYTCLIH-----AHCERGRLREARDIF 570

Query: 186 MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
             M+  G+ P+A TYT    A+ R   +  A G  Q+M  +G  P+E
Sbjct: 571 DGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLEEGVRPNE 617



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 69/143 (48%), Gaps = 8/143 (5%)

Query: 72  RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R  ++IF  M   GL  +AV       A  + G  + A   F ++ ++G  P+ V +  +
Sbjct: 564 REARDIFDGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLEEGVRPNEVTYNVL 623

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I A    G+   A + F  ML  G++PN YTY +LI G     +GN +   +A +   EM
Sbjct: 624 IHALCRMGRTNLAYQHFHEMLERGLSPNKYTYTLLIDG--NCKEGNWE---EAIRLYSEM 678

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQ 211
              G+ P+  T+ A+F+ F   Q
Sbjct: 679 HQHGIHPDHCTHNALFKGFDEGQ 701



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 8/157 (5%)

Query: 78  FHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F +MR  GL  + +    + +   K G   EAL LF  +K  G  P V+ +  +++ Y  
Sbjct: 360 FVEMRAMGLLPDLITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNILLDGYCR 419

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            G  +EA R    M+  G  P+  TY +L+ G         + L   +++  EM+ KG++
Sbjct: 420 LGDLEEARRFKQEMVEQGCQPDVSTYTILMNG-----SRKVRNLAMVREFFDEMLSKGLQ 474

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           P+   Y     A +      EA  L + M ++G   D
Sbjct: 475 PDCFAYNTRISAELILGSTSEAFQLTEVMISRGISSD 511



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 87/177 (49%), Gaps = 13/177 (7%)

Query: 60  FKKVVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDK 116
            + + DE   D  +++ ++ +M   G+  + V    + D+  ++G   +A +L  +++ +
Sbjct: 203 LRALRDEARWD--DMRSVYAEMLQLGIEPSIVTYNTLLDSFFREGRVDQAAKLLREMEAR 260

Query: 117 --GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174
             G +P  V +  VI   A  G+ ++A ++  RM  S  A +A+T+  LI G  A   G+
Sbjct: 261 PGGCLPSDVTYNVVINGLARKGELEKAAQLVDRMRMSKKA-SAFTFNPLITGYFA--RGS 317

Query: 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +  G  Q   +EM  +G+ P   TY  +     R+  V+ AR    +M+A G +PD
Sbjct: 318 VEKAGALQ---LEMENEGIVPTVVTYNTIIHGMFRSGNVEAARMKFVEMRAMGLLPD 371



 Score = 40.4 bits (93), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 7/94 (7%)

Query: 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTY 200
            L  F  M   GV P      ++++ L   A  +     D +    EM+  G+ P+  TY
Sbjct: 180 CLAAFREMAHHGVPPFIKECNLVLRALRDEARWD-----DMRSVYAEMLQLGIEPSIVTY 234

Query: 201 TAVFEAFVRAQKVDEARGLLQQMKAK--GFVPDE 232
             + ++F R  +VD+A  LL++M+A+  G +P +
Sbjct: 235 NTLLDSFFREGRVDQAAKLLREMEARPGGCLPSD 268


>gi|326489757|dbj|BAK01859.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 746

 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 77/160 (48%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +F +M+  GL  + V    + + L + G   EA ++  ++ DKG   DVV +T +I+ 
Sbjct: 377 RRLFEEMQKRGLAADRVTHTALINGLCRAGELKEADRVLQEMVDKGLDVDVVTYTVLIDG 436

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y   G   EA RV   M+   VAPN  TY  L  GL    D  A     A + L EM  K
Sbjct: 437 YCKRGNMVEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQGDVRA-----ANELLHEMCNK 491

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G+  N  TY ++     +   +++A  ++ +M+A G   D
Sbjct: 492 GLELNVYTYNSLINGLCKFGNLEQAMRIMTEMEAAGHRTD 531



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 80/166 (48%), Gaps = 8/166 (4%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D R   E+ H+M  +GL  N      + + L K G   +A+++  +++  GH  DV  +T
Sbjct: 477 DVRAANELLHEMCNKGLELNVYTYNSLINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYT 536

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
            +I+    +G+   A  +   ML  G+ P+  TY VL+ G   +     ++ G  +K L 
Sbjct: 537 TLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNVLMNGFCMSG----RVEG-GKKLLE 591

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
            M+ K +RPN  TY ++ + +   + +     + + M ++   P+E
Sbjct: 592 WMLEKNVRPNVVTYNSLMKQYCIDKNMKSTTEIYKGMHSQEVAPNE 637



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 73/155 (47%), Gaps = 8/155 (5%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +   M   G+  +AV    +       G    A +LF +++ +G   D V HTA+I    
Sbjct: 344 VLEDMTMHGVALDAVVFTTVISGFCSKGDLAAARRLFEEMQKRGLAADRVTHTALINGLC 403

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG+ KEA RV   M+  G+  +  TY VLI G      GN   + +A +   EMVG+ +
Sbjct: 404 RAGELKEADRVLQEMVDKGLDVDVVTYTVLIDGYCKR--GN---MVEAFRVHNEMVGRRV 458

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
            PN  TYTA+ +   +   V  A  LL +M  KG 
Sbjct: 459 APNVVTYTALSDGLCKQGDVRAANELLHEMCNKGL 493



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 71/152 (46%), Gaps = 9/152 (5%)

Query: 95  DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           D L K G    A +L  ++ +KG   +V  + ++I      G  ++A+R+   M A+G  
Sbjct: 470 DGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLINGLCKFGNLEQAMRIMTEMEAAGHR 529

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
            + YTY  LI  L  + +        A   L EM+ KG++P+  TY  +   F  + +V+
Sbjct: 530 TDVYTYTTLIDTLCKSGE-----FDRAHNMLQEMLDKGIKPSIATYNVLMNGFCMSGRVE 584

Query: 215 EARGLLQQMKAKGFVPD----EKAVKEALIDK 242
             + LL+ M  K   P+       +K+  IDK
Sbjct: 585 GGKKLLEWMLEKNVRPNVVTYNSLMKQYCIDK 616



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 84/196 (42%), Gaps = 29/196 (14%)

Query: 68  PTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P D      + H     G   NAVK+ D ++  GL   A                  +T+
Sbjct: 284 PPDVVTYGTMVHGYCVRGELENAVKLLDEMAAKGLESNA----------------TVYTS 327

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           VI    + GQ  +ALRV   M   GVA +A  +  +I G  +  D     L  A++   E
Sbjct: 328 VIALLCNKGQVSDALRVLEDMTMHGVALDAVVFTTVISGFCSKGD-----LAAARRLFEE 382

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID---KRG 244
           M  +G+  +  T+TA+     RA ++ EA  +LQ+M  KG   D       LID   KRG
Sbjct: 383 MQKRGLAADRVTHTALINGLCRAGELKEADRVLQEMVDKGLDVD-VVTYTVLIDGYCKRG 441

Query: 245 ---QGFRGVINILFGK 257
              + FR V N + G+
Sbjct: 442 NMVEAFR-VHNEMVGR 456



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 74/162 (45%), Gaps = 8/162 (4%)

Query: 73  NLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           N  ++  +M  +GL +NA     +   L   G   +AL++   +   G   D V  T VI
Sbjct: 305 NAVKLLDEMAAKGLESNATVYTSVIALLCNKGQVSDALRVLEDMTMHGVALDAVVFTTVI 364

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
             + S G    A R+F  M   G+A +  T+  LI GL  A +     L +A + L EMV
Sbjct: 365 SGFCSKGDLAAARRLFEEMQKRGLAADRVTHTALINGLCRAGE-----LKEADRVLQEMV 419

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            KG+  +  TYT + + + +   + EA  +  +M  +   P+
Sbjct: 420 DKGLDVDVVTYTVLIDGYCKRGNMVEAFRVHNEMVGRRVAPN 461



 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 74/156 (47%), Gaps = 13/156 (8%)

Query: 76  EIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASA 135
           E+  ++R  GL+ +       LS+  L  EA+ LF ++ DK    +V +H  +++A  SA
Sbjct: 214 ELLRRLRQYGLSPSPESCNAVLSRLPLD-EAIALFRELPDK----NVCSHNILLKALLSA 268

Query: 136 GQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP 195
           G+ K+A + F  M      P+  TY  ++ G     +     L +A K L EM  KG+  
Sbjct: 269 GRLKDACQHFDEM---SSPPDVVTYGTMVHGYCVRGE-----LENAVKLLDEMAAKGLES 320

Query: 196 NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           NA  YT+V        +V +A  +L+ M   G   D
Sbjct: 321 NATVYTSVIALLCNKGQVSDALRVLEDMTMHGVALD 356



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 73/160 (45%), Gaps = 8/160 (5%)

Query: 74  LQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           LQE+  K     +    V M +     G      +L   + +K   P+VV + ++++ Y 
Sbjct: 555 LQEMLDKGIKPSIATYNVLM-NGFCMSGRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQYC 613

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
                K    ++  M +  VAPN  TY +LIKG   A +     + +A  +  EM+ KG+
Sbjct: 614 IDKNMKSTTEIYKGMHSQEVAPNENTYNILIKGHCKARN-----MKEALYFHQEMIEKGL 668

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFV--PD 231
           R  A +Y+A+     + +K  EAR    +M+ +G    PD
Sbjct: 669 RLTASSYSALIRLLNKKKKFSEARVFFDKMRNEGLTAEPD 708



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 5/136 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K G    A  +  ++ DKG  P +  +  ++  +  +G+ +   ++   ML   
Sbjct: 538 LIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNVLMNGFCMSGRVEGGKKLLEWMLEKN 597

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V PN  TY  L+K      D N K   +  K    M  + + PN  TY  + +   +A+ 
Sbjct: 598 VRPNVVTYNSLMKQY--CIDKNMKSTTEIYK---GMHSQEVAPNENTYNILIKGHCKARN 652

Query: 213 VDEARGLLQQMKAKGF 228
           + EA    Q+M  KG 
Sbjct: 653 MKEALYFHQEMIEKGL 668


>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g31850, chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 70/139 (50%), Gaps = 5/139 (3%)

Query: 93   MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
            + D L+K G   EA++LF ++ D G  P+      +I  Y   G  + A ++F RM+  G
Sbjct: 899  LIDGLAKVGRLEEAMRLFEEMSDYGCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEG 958

Query: 153  VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            + P+  +Y +L+  L  A       + +A  Y  E+   G+ P+   Y  +     ++Q+
Sbjct: 959  IRPDLKSYTILVDCLCLAGR-----VDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQR 1013

Query: 213  VDEARGLLQQMKAKGFVPD 231
            ++EA  L  +M+ +G VPD
Sbjct: 1014 MEEALALYNEMRNRGIVPD 1032



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 82/170 (48%), Gaps = 8/170 (4%)

Query: 73  NLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           N +E+F KM+  G   + V    + D  +  G      + ++Q++  G+MPDVV  T ++
Sbjct: 315 NAKELFVKMKANGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILV 374

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
           +    A    EA   F  M   G+ PN +TY  LI GL  A       + DA K L  M 
Sbjct: 375 DVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGR-----IEDALKLLDTME 429

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
             G++P A TY    + F ++ +  +A    ++MKAKG VP+  A   +L
Sbjct: 430 SVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASL 479



 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 78/161 (48%), Gaps = 12/161 (7%)

Query: 76  EIFHKMRTEGL-----TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           E++ +M +EGL     T +A+ +  AL K   +   + L  +++D G  P+V   T  I 
Sbjct: 213 EVYRRMVSEGLKPSLKTYSALMV--ALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIR 270

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
               AG+  EA  +F RM   G  P+  TY VLI  L      NA  L +A++  ++M  
Sbjct: 271 VLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALC-----NAGQLENAKELFVKMKA 325

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            G +P+   Y  + + F     +D  +    QM+A G++PD
Sbjct: 326 NGHKPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPD 366



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 70/136 (51%), Gaps = 5/136 (3%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L + G   EA ++F ++ D+G  PD+V +T +I+A  +AGQ + A  +F++M A+G  P
Sbjct: 271 VLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKP 330

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +   Y  L+       D     L   +++  +M   G  P+  T+T + +   +A+  DE
Sbjct: 331 DQVIYITLLDKFNDFGD-----LDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDE 385

Query: 216 ARGLLQQMKAKGFVPD 231
           A      M+ +G +P+
Sbjct: 386 AFATFDVMRKQGILPN 401



 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 84/174 (48%), Gaps = 9/174 (5%)

Query: 72  RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R +  + +KMR  G   NA     +   L + G   EAL+++ ++  +G  P +  ++A+
Sbjct: 174 RQMTTVLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSAL 233

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           + A       +  + +   M   G+ PN YT+ + I+ L     G A  + +A +    M
Sbjct: 234 MVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVL-----GRAGKIDEAYEIFRRM 288

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDK 242
             +G  P+  TYT + +A   A +++ A+ L  +MKA G  PD+  +   L+DK
Sbjct: 289 DDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQ-VIYITLLDK 341



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 5/141 (3%)

Query: 91  VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           + +F ALS  G   +   +  +++  G + +  ++  +I     +G   EAL V+ RM++
Sbjct: 161 LTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYRRMVS 220

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
            G+ P+  TY+ L+  L    D    ++      L EM   G+RPN  T+T       RA
Sbjct: 221 EGLKPSLKTYSALMVALGKKRDSEMVMV-----LLKEMEDLGLRPNVYTFTICIRVLGRA 275

Query: 211 QKVDEARGLLQQMKAKGFVPD 231
            K+DEA  + ++M  +G  PD
Sbjct: 276 GKIDEAYEIFRRMDDEGCGPD 296



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 73/140 (52%), Gaps = 5/140 (3%)

Query: 91  VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           +   D   K G T +A++ F ++K KG +P++VA  A + + A  G+ +EA  +F  +  
Sbjct: 441 ITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRE 500

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
           +G+AP++ TY +++K  +         + +A   L EM+  G  P+     ++ ++  +A
Sbjct: 501 NGLAPDSVTYNMMMKCYSKVGQ-----VDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKA 555

Query: 211 QKVDEARGLLQQMKAKGFVP 230
            +VDEA  +  +MK     P
Sbjct: 556 GRVDEAWQMFDRMKDMKLSP 575



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 8/163 (4%)

Query: 72  RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R  + +F+ +R  GL  ++V    M    SK G   EA+ L +++   G  PDV+   ++
Sbjct: 489 REAKTMFNGLRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSL 548

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I++   AG+  EA ++F RM    ++P   TY  L+ GL     G    +  A +    M
Sbjct: 549 IDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGL-----GKEGRVQKAIELFESM 603

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + K   PN  ++  + + F +  +V+ A  +  +M      PD
Sbjct: 604 IXKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPD 646



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 76/165 (46%), Gaps = 8/165 (4%)

Query: 70   DPRNLQEIFHKMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
            D     ++F +M  EG+     +   + D L   G   EAL  F ++K  G  PD +A+ 
Sbjct: 943  DTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNELKSTGLDPDFIAYN 1002

Query: 127  AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
             +I     + + +EAL ++  M   G+ P+ YTY  L+  L     G A ++  A++   
Sbjct: 1003 RIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNL-----GLAGMVEQAKRMYE 1057

Query: 187  EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            E+   G+ P+  TY A+   +  ++  + A  + + M   G  P+
Sbjct: 1058 ELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPN 1102



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 79/191 (41%), Gaps = 37/191 (19%)

Query: 76  EIFHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           ++F  M+  G   +A   F+ L     K G   E  +L+ ++  +   PD + +  VI +
Sbjct: 809 DLFKDMKNVGCAPDAFT-FNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIVISS 867

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA-------------------- 171
            A +    +AL  F  +++S   P   TY  LI GLA                       
Sbjct: 868 LAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGCKPN 927

Query: 172 --------DGNAKILGD---AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
                   +G  KI GD   A +    MV +G+RP+  +YT + +    A +VDEA    
Sbjct: 928 CAIFNILINGYGKI-GDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYF 986

Query: 221 QQMKAKGFVPD 231
            ++K+ G  PD
Sbjct: 987 NELKSTGLDPD 997



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 67/143 (46%), Gaps = 6/143 (4%)

Query: 103 THEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAV 162
           T +A  LF  +K+ G  PD      ++  +  +G+  E   ++  M++    P+A TY +
Sbjct: 804 TEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNI 863

Query: 163 LIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
           +I  LA + +     L  A  +  ++V    RP   TY  + +   +  +++EA  L ++
Sbjct: 864 VISSLAKSNN-----LDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEE 918

Query: 223 MKAKGFVPDEKAVKEALIDKRGQ 245
           M   G  P+  A+   LI+  G+
Sbjct: 919 MSDYGCKPN-CAIFNILINGYGK 940



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 72/165 (43%), Gaps = 8/165 (4%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D    +E + +M  +G   + V    + D L K     EA   F  ++ +G +P++  + 
Sbjct: 347 DLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYN 406

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
            +I     AG+ ++AL++   M + GV P AYTY   I     + +      G A +   
Sbjct: 407 TLICGLLRAGRIEDALKLLDTMESVGVQPTAYTYITFIDYFGKSGET-----GKAVETFE 461

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +M  KG+ PN     A   +     ++ EA+ +   ++  G  PD
Sbjct: 462 KMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPD 506



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 67/155 (43%), Gaps = 8/155 (5%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D+L K G   EA Q+F ++KD    P VV +  ++      G+ ++A+ +F  M+   
Sbjct: 548 LIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIXKK 607

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            +PN  ++  L+       +        A K   +M     +P+  TY  V    ++  K
Sbjct: 608 CSPNTISFNTLLDCFCKNDEVEL-----ALKMFSKMTVMDCKPDVLTYNTVIYGLIKENK 662

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEAL--IDKRGQ 245
           V+ A     Q+K K   PD   +   L  + K GQ
Sbjct: 663 VNHAFWFFHQLK-KSMHPDHVTICTLLPGLVKCGQ 696



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/144 (20%), Positives = 62/144 (43%), Gaps = 9/144 (6%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F +M+   L+   V    +   L K+G   +A++LF  +  K   P+ ++   +++ +
Sbjct: 563 QMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFNTLLDCF 622

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               + + AL++F +M      P+  TY  +I GL      N         +    + K 
Sbjct: 623 CKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAF------WFFHQLKKS 676

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEA 216
           M P+  T   +    V+  ++ +A
Sbjct: 677 MHPDHVTICTLLPGLVKCGQIGDA 700



 Score = 45.4 bits (106), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 6/126 (4%)

Query: 106 ALQLFAQIKDK-GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           A Q+F +   K G  P + ++  +I         ++A  +F  M   G AP+A+T+ +L+
Sbjct: 771 AYQIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLL 830

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
                A  G +  + +  +   EM+ +  +P+A TY  V  +  ++  +D+A      + 
Sbjct: 831 -----AVHGKSGKITELFELYKEMISRRCKPDAITYNIVISSLAKSNNLDKALDFFYDLV 885

Query: 225 AKGFVP 230
           +  F P
Sbjct: 886 SSDFRP 891



 Score = 44.3 bits (103), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 68/139 (48%), Gaps = 12/139 (8%)

Query: 34   SLSSSSDQPTKKYVNTKSK-LPPPYDPFKKVVDEEPTDPRNLQE---IFHKMRTEGL--- 86
             L+   D+    +   KS  L P +  + ++++      R ++E   ++++MR  G+   
Sbjct: 974  CLAGRVDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQR-MEEALALYNEMRNRGIVPD 1032

Query: 87   --TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRV 144
              T N++ +   L+  G+  +A +++ +++  G  PDV  + A+I  Y+ +   + A  V
Sbjct: 1033 LYTYNSLMLNLGLA--GMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAYTV 1090

Query: 145  FMRMLASGVAPNAYTYAVL 163
            +  M+  G  PN  TYA L
Sbjct: 1091 YKNMMVDGCNPNIGTYAQL 1109


>gi|334182516|ref|NP_172730.3| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
 gi|332190794|gb|AEE28915.1| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
          Length = 735

 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 8/165 (4%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+F +M + G+  + +    + D L  +G   +AL++F  ++       +V +T +IE 
Sbjct: 423 EELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEG 482

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G+ ++A  +F  +   GV PN  TY V+I GL          L +A   L +M   
Sbjct: 483 MCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGS-----LSEANILLRKMEED 537

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK 236
           G  PN  TY  +  A +R   +  +  L+++MK+ GF  D  ++K
Sbjct: 538 GNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIK 582



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 68/139 (48%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + + + G T  AL L  +++++    DV  ++ +I++    G    A+ +F  M   G
Sbjct: 199 IVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKG 258

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +  +  TY  L++GL  A   N     D    L +MV + + PN  T+  + + FV+  K
Sbjct: 259 IKSSVVTYNSLVRGLCKAGKWN-----DGALLLKDMVSREIVPNVITFNVLLDVFVKEGK 313

Query: 213 VDEARGLLQQMKAKGFVPD 231
           + EA  L ++M  +G  P+
Sbjct: 314 LQEANELYKEMITRGISPN 332



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 69/139 (49%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   K+G   EA +L+ ++  +G  P+++ +  +++ Y    +  EA  +   M+ + 
Sbjct: 304 LLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNK 363

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            +P+  T+  LIKG         K + D  K    +  +G+  NA TY+ + + F ++ K
Sbjct: 364 CSPDIVTFTSLIKGYCM-----VKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGK 418

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +  A  L Q+M + G +PD
Sbjct: 419 IKLAEELFQEMVSHGVLPD 437



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D+L +DG    A+ LF +++ KG    VV + +++     AG+  +   +   M++  
Sbjct: 234 IIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSRE 293

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN  T+ VL+             L +A +   EM+ +G+ PN  TY  + + +    +
Sbjct: 294 IVPNVITFNVLLDVFVKEGK-----LQEANELYKEMITRGISPNIITYNTLMDGYCMQNR 348

Query: 213 VDEARGLLQQMKAKGFVPD 231
           + EA  +L  M      PD
Sbjct: 349 LSEANNMLDLMVRNKCSPD 367



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 63/132 (47%), Gaps = 5/132 (3%)

Query: 100 DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYT 159
           +G   EA+ L  ++ + G  PDVV + +++     +G    AL +  +M    V  + +T
Sbjct: 171 EGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFT 230

Query: 160 YAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGL 219
           Y+ +I  L    DG    +  A     EM  KG++ +  TY ++     +A K ++   L
Sbjct: 231 YSTIIDSL--CRDG---CIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALL 285

Query: 220 LQQMKAKGFVPD 231
           L+ M ++  VP+
Sbjct: 286 LKDMVSREIVPN 297



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 30/136 (22%), Positives = 62/136 (45%), Gaps = 5/136 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M +   +   T  A  +  ++   G+ PD      +I+     G+  EA+ +  RM+ +G
Sbjct: 129 MINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENG 188

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  TY  ++ G+  + D +      A   L +M  + ++ +  TY+ + ++  R   
Sbjct: 189 CQPDVVTYNSIVNGICRSGDTSL-----ALDLLRKMEERNVKADVFTYSTIIDSLCRDGC 243

Query: 213 VDEARGLLQQMKAKGF 228
           +D A  L ++M+ KG 
Sbjct: 244 IDAAISLFKEMETKGI 259


>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
 gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
          Length = 737

 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 80/170 (47%), Gaps = 9/170 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E++  +R  G   + V    + D L K     +A +L  +++  G  PDVVA+T +I  +
Sbjct: 467 EVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGF 526

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             A Q  ++L  F  ML  G  P   TY+++I  L  +A      + D    L  M+ +G
Sbjct: 527 CKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSAR-----VRDGCMLLKTMLERG 581

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDK 242
           + P+A  YT+V +   ++   DEA  L + MK  G  P        L+DK
Sbjct: 582 VTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAP-TVVTYNVLVDK 630



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 71/157 (45%), Gaps = 8/157 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
            F +M  +G     +    + D L K     +   L   + ++G  PD + +T+VI+   
Sbjct: 538 FFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLC 597

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            +    EA  ++  M  +G AP   TY VL+  L   +      L +A   L  M   G 
Sbjct: 598 KSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSR-----LDEAIHLLEVMESDGC 652

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
            P+  TY +VF+ F ++ + D+A  L Q MK++G  P
Sbjct: 653 LPDTVTYNSVFDGFWKSAEHDKAFRLFQAMKSRGCSP 689



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 70/168 (41%), Gaps = 30/168 (17%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M D   K G    A +LF  + D+G +PD+  +  +I     A +  +A ++  RM  +G
Sbjct: 382 MIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAG 441

Query: 153 VAPNAYTYAVLIKGLAAAA----------------------------DGNAKI--LGDAQ 182
             P+  TY  ++ GL  A+                            DG  K   L DA+
Sbjct: 442 CPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAE 501

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           K L EM   G  P+   YT +   F +A ++D++     +M  KG VP
Sbjct: 502 KLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVP 549



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 5/138 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DAL K     +A  +   + + G  P+VV +  +I  +   G   EA+ +F +ML + 
Sbjct: 242 LVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENS 301

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            +P+ +TY +LI G             D  K L EMV  G  PN  TY  + ++ V++ K
Sbjct: 302 CSPDVFTYNILIDGYCKQERPQ-----DGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGK 356

Query: 213 VDEARGLLQQMKAKGFVP 230
             +A  L Q M  +   P
Sbjct: 357 YIDAFNLAQMMLRRDCKP 374



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 71/164 (43%), Gaps = 8/164 (4%)

Query: 71  PRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P++  ++  +M   G   N +    + D+L K G   +A  L   +  +   P       
Sbjct: 322 PQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNL 381

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           +I+ +   GQ   A  +F  M   G  P+ YTY ++I G        A  + DA++ L  
Sbjct: 382 MIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGAC-----RANRIDDARQLLER 436

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           M   G  P+  TY ++     +A +VDEA  + + ++  G+  D
Sbjct: 437 MTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLD 480



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 49/235 (20%), Positives = 96/235 (40%), Gaps = 15/235 (6%)

Query: 3   ATAILRWLLHSPSPKRSLRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKK 62
           A     W    P  K S    N  ++A +++     + +    + N +  L  P      
Sbjct: 115 AVKFFDWCTGQPGYKHSKFTCNCLLSAFVRKK---KAQEAYDLFKNHRCGLCSPDSITYS 171

Query: 63  VVDEEPTDPRNLQE---IFHKMRTEGLT-NNAV--KMFDALSKDGLTHEALQLFAQIKDK 116
            +       R+ Q+   +  +M   G+  +NAV   +   L  +G    AL  +  ++ +
Sbjct: 172 TLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQ-R 230

Query: 117 GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK 176
              P V+ +T +++A   + +  +A  +   M+ +G APN  TY  LI G      GN  
Sbjct: 231 NCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKL--GN-- 286

Query: 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            + +A     +M+     P+  TY  + + + + ++  +   LLQ+M   G  P+
Sbjct: 287 -MDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPN 340



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/154 (22%), Positives = 65/154 (42%), Gaps = 8/154 (5%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +   M   G+T +A+    + D L K     EA +L+  +K  G  P VV +  +++   
Sbjct: 573 LLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLC 632

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
              +  EA+ +   M + G  P+  TY  +  G   +A+ +      A +    M  +G 
Sbjct: 633 KVSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGFWKSAEHDK-----AFRLFQAMKSRGC 687

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
            P    Y+ +    V  +K+D+A  + ++    G
Sbjct: 688 SPTPFMYSLLLTKLVAEEKMDQAMEIWEEALEAG 721



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 3/97 (3%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E++  M+  G     V    + D L K     EA+ L   ++  G +PD V + +V + +
Sbjct: 607 ELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGF 666

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169
             + +  +A R+F  M + G +P  + Y++L+  L A
Sbjct: 667 WKSAEHDKAFRLFQAMKSRGCSPTPFMYSLLLTKLVA 703


>gi|15218855|ref|NP_171855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180297|sp|Q9LR67.1|PPR9_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g03560, mitochondrial; Flags: Precursor
 gi|9280662|gb|AAF86531.1|AC002560_24 F21B7.18 [Arabidopsis thaliana]
 gi|332189465|gb|AEE27586.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 76/146 (52%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+G  +E   +F  +  KG  P+V  +T +I+ YA +G  ++A+R+  RM+  G  P
Sbjct: 336 GLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKP 395

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY+V++ GL      N ++  +A  Y       G+  N+  Y+++ +   +A +VDE
Sbjct: 396 DVVTYSVVVNGLCK----NGRV-EEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDE 450

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      ALID
Sbjct: 451 AERLFEEMSEKGCTRDSYCYN-ALID 475



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 72/132 (54%), Gaps = 5/132 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ D+G  PDVV ++ V+      G+ +EAL  F      G
Sbjct: 368 LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDG 427

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +A N+  Y+ LI GL     G A  + +A++   EM  KG   ++  Y A+ +AF + +K
Sbjct: 428 LAINSMFYSSLIDGL-----GKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRK 482

Query: 213 VDEARGLLQQMK 224
           VDEA  L ++M+
Sbjct: 483 VDEAIALFKRME 494



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 79/170 (46%), Gaps = 11/170 (6%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           + FH  R +GL  N++    + D L K G   EA +LF ++ +KG   D   + A+I+A+
Sbjct: 418 DYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAF 477

Query: 133 ASAGQGKEALRVFMRMLAS-GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               +  EA+ +F RM    G     YTY +L+ G+            +A K    M+ K
Sbjct: 478 TKHRKVDEAIALFKRMEEEEGCDQTVYTYTILLSGMFKEHRNE-----EALKLWDMMIDK 532

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           G+ P A  + A+      + KV  A  +L ++   G + D  A  E +I+
Sbjct: 533 GITPTAACFRALSTGLCLSGKVARACKILDELAPMGVILD--AACEDMIN 580



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 64/156 (41%), Gaps = 6/156 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M  A   D      + L+ ++ +KG      A + VI      G+  E   VF  M+  G
Sbjct: 298 MIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKG 357

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN   Y VLI G A +       + DA + L  M+ +G +P+  TY+ V     +  +
Sbjct: 358 SKPNVAIYTVLIDGYAKSGS-----VEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGR 412

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFR 248
           V+EA       +  G   +      +LID  G+  R
Sbjct: 413 VEEALDYFHTCRFDGLAIN-SMFYSSLIDGLGKAGR 447



 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 58/140 (41%), Gaps = 8/140 (5%)

Query: 88  NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMR 147
           N  +K F  L   G+  E L ++ ++K+ G  P +  +  ++    SA     A RVF  
Sbjct: 191 NALIKSFGKL---GMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEV 247

Query: 148 MLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAF 207
           M +  + P+  TY  +IKG   A          A + L +M  +G   +  TY  + +A 
Sbjct: 248 MESGRIKPDIVTYNTMIKGYCKAGQTQK-----AMEKLRDMETRGHEADKITYMTMIQAC 302

Query: 208 VRAQKVDEARGLLQQMKAKG 227
                      L Q+M  KG
Sbjct: 303 YADSDFGSCVALYQEMDEKG 322


>gi|359482689|ref|XP_003632809.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Vitis vinifera]
          Length = 879

 Score = 80.1 bits (196), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 44/139 (31%), Positives = 70/139 (50%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   ++G   EA +LF    +KG  P +V + A+I+ Y   G  K+A+    RM    
Sbjct: 490 LVDGFIRNGNLDEARKLFELTIEKGMNPGIVGYNAMIKGYCKFGMMKDAMACINRMKKRH 549

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +AP+ +TY+ +I G     D     L  AQK   EMV    +PN  TYT++   F R   
Sbjct: 550 LAPDEFTYSTVIDGYVKQHD-----LDGAQKMFREMVKMKCKPNVVTYTSLINGFCRKGD 604

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +  +  + ++M+A G VP+
Sbjct: 605 LHRSLKIFREMQACGLVPN 623



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 42/138 (30%), Positives = 67/138 (48%), Gaps = 5/138 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +  A  K G    A     ++ ++GH PD+V + A++     AG+   AL +  +ML  G
Sbjct: 385 LIHAYCKQGGYDRASNWLIEMTERGHKPDLVTYGALVHGLVVAGEVDVALTIREKMLERG 444

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V P+A  Y +L+ GL          L  A+  L EM+ + + P+A  Y  + + F+R   
Sbjct: 445 VFPDAGIYNILMSGLCKKFK-----LPAAKLLLAEMLDQSVLPDAFVYATLVDGFIRNGN 499

Query: 213 VDEARGLLQQMKAKGFVP 230
           +DEAR L +    KG  P
Sbjct: 500 LDEARKLFELTIEKGMNP 517



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 8/165 (4%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D + +  +  +M + GLT N      + DA  K G   +A++    + + G  PD+V + 
Sbjct: 289 DFKAIDRLLMEMNSRGLTVNVQVYNTIIDARYKHGHIVKAVETIEGMIECGCKPDIVTYN 348

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
            +I      G+  EA ++  + L  G+ PN ++Y  LI         +      A  +L+
Sbjct: 349 TLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQGGYDR-----ASNWLI 403

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           EM  +G +P+  TY A+    V A +VD A  + ++M  +G  PD
Sbjct: 404 EMTERGHKPDLVTYGALVHGLVVAGEVDVALTIREKMLERGVFPD 448



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/133 (30%), Positives = 62/133 (46%), Gaps = 5/133 (3%)

Query: 99  KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAY 158
           +DG   EA QL  Q   KG MP+  ++T +I AY   G    A    + M   G  P+  
Sbjct: 356 RDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQGGYDRASNWLIEMTERGHKPDLV 415

Query: 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218
           TY  L+ GL  A + +      A     +M+ +G+ P+AG Y  +     +  K+  A+ 
Sbjct: 416 TYGALVHGLVVAGEVDV-----ALTIREKMLERGVFPDAGIYNILMSGLCKKFKLPAAKL 470

Query: 219 LLQQMKAKGFVPD 231
           LL +M  +  +PD
Sbjct: 471 LLAEMLDQSVLPD 483



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/140 (29%), Positives = 64/140 (45%), Gaps = 5/140 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   K G    A  LF ++K KG +P V  + A+I  +   G  K   R+ M M + G
Sbjct: 245 LIDGYCKKGDMEMANGLFIELKLKGFLPTVETYGAIINGFCKKGDFKAIDRLLMEMNSRG 304

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +  N   Y  +I   A    G+   +  A + +  M+  G +P+  TY  +     R  K
Sbjct: 305 LTVNVQVYNTIID--ARYKHGH---IVKAVETIEGMIECGCKPDIVTYNTLISGSCRDGK 359

Query: 213 VDEARGLLQQMKAKGFVPDE 232
           V EA  LL+Q   KG +P++
Sbjct: 360 VSEADQLLEQALGKGLMPNK 379



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/165 (24%), Positives = 78/165 (47%), Gaps = 13/165 (7%)

Query: 74  LQEIFHKMRTEGLTNNAVKM---FDALSKDGLTHEALQLFAQI-KDKGHMPDVVAHTAVI 129
           ++ +   MR E ++     M     A S  GL  +AL+L+  + K   + PDV+A  +++
Sbjct: 113 MEVVLENMRVEEMSPTREAMSIVIQAYSDSGLVEKALELYYFVLKTYTYFPDVIACNSLL 172

Query: 130 EAYASAGQGKEALRVFMRML----ASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185
                 G+ + A +++  ML    A     + Y+  +++KGL          L + +K +
Sbjct: 173 NMLVKLGRIEIARKLYDEMLEIDGAGDRCVDNYSTCIMVKGLCKEGK-----LEEGRKLI 227

Query: 186 MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
            +  G+G  PN   Y  + + + +   ++ A GL  ++K KGF+P
Sbjct: 228 EDRWGQGCIPNIIFYNTLIDGYCKKGDMEMANGLFIELKLKGFLP 272



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 83/196 (42%), Gaps = 14/196 (7%)

Query: 50  KSKLPPPYDPFKKVVDE--EPTDPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTH 104
           K  L P    +  V+D   +  D    Q++F +M       N V    + +   + G  H
Sbjct: 547 KRHLAPDEFTYSTVIDGYVKQHDLDGAQKMFREMVKMKCKPNVVTYTSLINGFCRKGDLH 606

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
            +L++F +++  G +P+VV ++ +I ++    +  +A   F  ML +   PN  T+  L+
Sbjct: 607 RSLKIFREMQACGLVPNVVTYSILIGSFCKEAKLIDAASFFEEMLMNKCVPNDVTFNYLV 666

Query: 165 KGLA-----AAADGNAKILGDAQKYLM----EMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
            G +     A ++   +   + Q   +     M+  G  P +  Y ++     +      
Sbjct: 667 NGFSKNGTRAISEKGNEFQENKQSMFLNFFGRMISDGWAPRSAAYNSILICLCQYGMFRT 726

Query: 216 ARGLLQQMKAKGFVPD 231
           A  L  +M +KG +PD
Sbjct: 727 ALQLSNKMTSKGCIPD 742



 Score = 53.5 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 59/139 (42%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M   L K+G   E  +L      +G +P+++ +  +I+ Y   G  + A  +F+ +   G
Sbjct: 210 MVKGLCKEGKLEEGRKLIEDRWGQGCIPNIIFYNTLIDGYCKKGDMEMANGLFIELKLKG 269

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P   TY  +I G     D  A       + LMEM  +G+  N   Y  + +A  +   
Sbjct: 270 FLPTVETYGAIINGFCKKGDFKA-----IDRLLMEMNSRGLTVNVQVYNTIIDARYKHGH 324

Query: 213 VDEARGLLQQMKAKGFVPD 231
           + +A   ++ M   G  PD
Sbjct: 325 IVKAVETIEGMIECGCKPD 343


>gi|302794977|ref|XP_002979252.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
 gi|300153020|gb|EFJ19660.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
          Length = 702

 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 79/158 (50%), Gaps = 8/158 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E F +MR  G   N V    + D L K     E L+L   +K+KG   +++   A++ A 
Sbjct: 241 EYFKRMRAVGCAPNVVTYSSLIDGLCKVDRPSECLELLLHMKEKGFGINIIDFNAMLHAL 300

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               + ++A + F R+L SG  PN  TY V + GL  A       + +A + L+EMV   
Sbjct: 301 WKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGR-----VDEAYRILLEMVESK 355

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           + P+  TY+++ + F +A ++D+A  +  +M     +P
Sbjct: 356 VTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIP 393



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 70/141 (49%), Gaps = 5/141 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +   K G   +A +L  ++K++G   DV+ H+ +I+     G+  EAL  F  M    
Sbjct: 117 VINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSM-GEE 175

Query: 153 VAPNAYTYAVLIKGLAAA--ADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
            +PN  TY  ++ GL  A   D   ++  D +K        G  P+  +Y+ V +A  +A
Sbjct: 176 CSPNVITYNTVVNGLCKANRIDEALELFDDMEKRY--EASHGCEPDVISYSTVIDALCKA 233

Query: 211 QKVDEARGLLQQMKAKGFVPD 231
           Q+VD+A    ++M+A G  P+
Sbjct: 234 QRVDKAYEYFKRMRAVGCAPN 254



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 75/181 (41%), Gaps = 37/181 (20%)

Query: 86  LTNNAVKMFDALSKDGLTHEALQLFAQIKDK-----GHMPDVVAHTAVIEAYASAGQGKE 140
           +T N V   + L K     EAL+LF  ++ +     G  PDV++++ VI+A   A +  +
Sbjct: 181 ITYNTV--VNGLCKANRIDEALELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDK 238

Query: 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAA----------------------ADGNAKIL 178
           A   F RM A G APN  TY+ LI GL                          D NA + 
Sbjct: 239 AYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRPSECLELLLHMKEKGFGINIIDFNAMLH 298

Query: 179 G--------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
                     A ++   ++  G +PN  TY        +A +VDEA  +L +M      P
Sbjct: 299 ALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMVESKVTP 358

Query: 231 D 231
           D
Sbjct: 359 D 359



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 69/163 (42%), Gaps = 8/163 (4%)

Query: 71  PRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P    E+   M+ +G   N +    M  AL K+    +A Q F ++   G  P+VV +  
Sbjct: 271 PSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNV 330

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
            +     AG+  EA R+ + M+ S V P+  TY+ +I G   A       +  A      
Sbjct: 331 AVHGLCKAGRVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGR-----MDKADDVFTR 385

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           M+     P+  T+  +   F   +K  EA  + + M   GF+P
Sbjct: 386 MMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIP 428



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 85/199 (42%), Gaps = 34/199 (17%)

Query: 76  EIFHKMRTEGLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           + F ++   G   N V        L K G   EA ++  ++ +    PDV+ ++++I+ +
Sbjct: 311 QFFERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMVESKVTPDVITYSSIIDGF 370

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADG-----------NAKILGDA 181
             AG+  +A  VF RM+     P+  T+  L+ G +                NA  +   
Sbjct: 371 CKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGL 430

Query: 182 QKY--LMEMVG-----------------KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
           Q Y  LM+ V                  K  +P+  TY  + +   RA++VDEA+  L  
Sbjct: 431 QTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDCNTYAPLIQCLCRARRVDEAKEFLDV 490

Query: 223 MKAKGFVPDEKAVKEALID 241
           M+A   VP+  A+  AL++
Sbjct: 491 MEADNVVPN-GAICHALVE 508



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 72/185 (38%), Gaps = 30/185 (16%)

Query: 76  EIFHKMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           EI+HKM+ +      N    +   L +     EA +    ++    +P+     A++E  
Sbjct: 451 EIYHKMKRKKRQPDCNTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALVEVL 510

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK--------ILGDAQKY 184
              G+  EA  V   ++  G  P   T+ +L++ L       A          + DA  Y
Sbjct: 511 CKQGEVDEACSVLDNVVEVGCQPLGETFKILVEELYLRKKWEAASKLLRSPGFVADAATY 570

Query: 185 -------------------LMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
                              + +MV KG+RP+ GTY AV  +     +V+ A    ++M +
Sbjct: 571 SLCVAEICKAGKPDEAVEVIEQMVLKGVRPDEGTYVAVLRSLCGLDRVESAIAEFEKMAS 630

Query: 226 KGFVP 230
           +G  P
Sbjct: 631 RGCAP 635



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 5/139 (3%)

Query: 113 IKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172
           ++  G + D   ++  +     AG+  EA+ V  +M+  GV P+  TY  +++ L    D
Sbjct: 558 LRSPGFVADAATYSLCVAEICKAGKPDEAVEVIEQMVLKGVRPDEGTYVAVLRSLCGL-D 616

Query: 173 GNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
                + + +K    M  +G  P   TYT +      A   DEA  + + M A GF P  
Sbjct: 617 RVESAIAEFEK----MASRGCAPGLVTYTLLIGEACSADMADEAFRIFEAMVAAGFTPQA 672

Query: 233 KAVKEALIDKRGQGFRGVI 251
           + ++      R  G++ ++
Sbjct: 673 QTMRTLSSCLRDAGYQDLL 691



 Score = 45.8 bits (107), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 64/167 (38%), Gaps = 27/167 (16%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D +        AL+++ ++K K   PD   +  +I+    A +  EA      M A  
Sbjct: 436 LMDCVCGADSVESALEIYHKMKRKKRQPDCNTYAPLIQCLCRARRVDEAKEFLDVMEADN 495

Query: 153 VAPNAYTYAVLIKGLAAAADGN-------------AKILGDAQKYLME------------ 187
           V PN      L++ L    + +              + LG+  K L+E            
Sbjct: 496 VVPNGAICHALVEVLCKQGEVDEACSVLDNVVEVGCQPLGETFKILVEELYLRKKWEAAS 555

Query: 188 --MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
             +   G   +A TY+       +A K DEA  +++QM  KG  PDE
Sbjct: 556 KLLRSPGFVADAATYSLCVAEICKAGKPDEAVEVIEQMVLKGVRPDE 602



 Score = 45.1 bits (105), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 5/103 (4%)

Query: 97  LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
           + K G   EA+++  Q+  KG  PD   + AV+ +     + + A+  F +M + G AP 
Sbjct: 577 ICKAGKPDEAVEVIEQMVLKGVRPDEGTYVAVLRSLCGLDRVESAIAEFEKMASRGCAPG 636

Query: 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGT 199
             TY +LI G A +AD    +  +A +    MV  G  P A T
Sbjct: 637 LVTYTLLI-GEACSAD----MADEAFRIFEAMVAAGFTPQAQT 674



 Score = 43.5 bits (101), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 5/76 (6%)

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           G   NAYT AVL+          AK   +A + L E +     PN   YT V   F +A 
Sbjct: 71  GFQHNAYTCAVLLNAFV-----KAKRHEEAHRLLKEELEPLCFPNEIMYTTVINGFCKAG 125

Query: 212 KVDEARGLLQQMKAKG 227
           +VD+A  LL +MK +G
Sbjct: 126 QVDQAFELLDEMKERG 141



 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 3/100 (3%)

Query: 71  PRNLQEIFHKMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P    E+  +M  +G+       V +  +L        A+  F ++  +G  P +V +T 
Sbjct: 583 PDEAVEVIEQMVLKGVRPDEGTYVAVLRSLCGLDRVESAIAEFEKMASRGCAPGLVTYTL 642

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
           +I    SA    EA R+F  M+A+G  P A T   L   L
Sbjct: 643 LIGEACSADMADEAFRIFEAMVAAGFTPQAQTMRTLSSCL 682


>gi|357481045|ref|XP_003610808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512143|gb|AES93766.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1084

 Score = 80.1 bits (196), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 58/179 (32%), Positives = 85/179 (47%), Gaps = 15/179 (8%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M+  G+  +      + D+  K GL  +A + F ++  KG  P+VV +TA+I AY 
Sbjct: 482 LFEEMKRNGIVPSVYTYTILIDSFCKAGLIQQARKWFDEMLHKGCTPNVVTYTALIHAYL 541

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKG------LAAAADGNAKILGDAQ----- 182
            A Q   A  +F  ML  G  PN  TY  LI G      +  A    A++ GD +     
Sbjct: 542 KAKQMPVADELFEMMLLEGCKPNVVTYTALIDGHCKAGQIEKACQIYARMRGDIESSDMD 601

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           KY          PN  TY A+ +   +A +V EA  LL  M A G  P++  V +A+ID
Sbjct: 602 KYFKLDHNNCEGPNVITYGALVDGLCKANRVKEAHELLDTMLAHGCEPNQ-IVYDAVID 659



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 56/189 (29%), Positives = 96/189 (50%), Gaps = 14/189 (7%)

Query: 65  DEEPT-DPRNLQE-IFHKMRTEGLTNNAVKMFD---ALSKDGLTHEALQLFAQIKDKGHM 119
           +E+P+ D  +L E  + +M   G+  N V + +    L   G   +A ++  ++  KG +
Sbjct: 398 EEQPSSDILDLVEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDQAFKIICEMMGKGFV 457

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
           PD   ++ VI     A + ++A  +F  M  +G+ P+ YTY +LI     A      ++ 
Sbjct: 458 PDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKAG-----LIQ 512

Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
            A+K+  EM+ KG  PN  TYTA+  A+++A+++  A  L + M  +G  P+      AL
Sbjct: 513 QARKWFDEMLHKGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGCKPN-VVTYTAL 571

Query: 240 ID---KRGQ 245
           ID   K GQ
Sbjct: 572 IDGHCKAGQ 580



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 78/163 (47%), Gaps = 8/163 (4%)

Query: 72  RNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           +   E+   M   G   N +    + D   K G   +A ++F ++ ++G+ P++  +++ 
Sbjct: 633 KEAHELLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKMSERGYSPNLYTYSSF 692

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I+      +    L+V  +ML +   PN   Y  ++ GL      +     +A K +++M
Sbjct: 693 IDCLFKDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDGLCKIGKTD-----EAYKLMLKM 747

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             KG  PN  TYTA+ + F ++ K+++   L + M +KG  P+
Sbjct: 748 EEKGCNPNVVTYTAMIDGFGKSGKIEQCLELFRDMCSKGCAPN 790



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 80/158 (50%), Gaps = 10/158 (6%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++  KM     T N V   +M D L K G T EA +L  ++++KG  P+VV +TA+I+ +
Sbjct: 707 KVLSKMLENSCTPNVVIYTEMVDGLCKIGKTDEAYKLMLKMEEKGCNPNVVTYTAMIDGF 766

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             +G+ ++ L +F  M + G APN  TY VLI    +       +L +A K L EM    
Sbjct: 767 GKSGKIEQCLELFRDMCSKGCAPNFITYRVLINHCCSNG-----LLDEAYKLLDEMKQTY 821

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
              +  ++  + E F  +Q+   + GLL ++     VP
Sbjct: 822 WPKHILSHRKIIEGF--SQEFITSIGLLDELSENESVP 857



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 36/121 (29%), Positives = 63/121 (52%), Gaps = 5/121 (4%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +A  LF ++K  G +P V  +T +I+++  AG  ++A + F  ML  G  PN  TY  LI
Sbjct: 478 KAFSLFEEMKRNGIVPSVYTYTILIDSFCKAGLIQQARKWFDEMLHKGCTPNVVTYTALI 537

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
                     AK +  A +    M+ +G +PN  TYTA+ +   +A ++++A  +  +M+
Sbjct: 538 HAYL-----KAKQMPVADELFEMMLLEGCKPNVVTYTALIDGHCKAGQIEKACQIYARMR 592

Query: 225 A 225
            
Sbjct: 593 G 593



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 46/177 (25%), Positives = 76/177 (42%), Gaps = 28/177 (15%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIK----------------DK 116
           E+F  M  EG   N V    + D   K G   +A Q++A+++                + 
Sbjct: 551 ELFEMMLLEGCKPNVVTYTALIDGHCKAGQIEKACQIYARMRGDIESSDMDKYFKLDHNN 610

Query: 117 GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK 176
              P+V+ + A+++    A + KEA  +   MLA G  PN   Y  +I       DG  K
Sbjct: 611 CEGPNVITYGALVDGLCKANRVKEAHELLDTMLAHGCEPNQIVYDAVI-------DGFCK 663

Query: 177 I--LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           I  L DAQ+   +M  +G  PN  TY++  +   +  ++D    +L +M      P+
Sbjct: 664 IGKLQDAQEVFTKMSERGYSPNLYTYSSFIDCLFKDNRLDLVLKVLSKMLENSCTPN 720



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 61/135 (45%), Gaps = 7/135 (5%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
           +L K G   EA  L  + +D   +PD V +  ++     A   +EA+ +  RM +S   P
Sbjct: 255 SLCKGGKCREAFDLIDEAED--FVPDTVFYNRMVSGLCEASLFEEAMDILHRMRSSSCIP 312

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           N  TY +L+ G           LG  ++ L  M+ +G  PN   + ++  A+ +++    
Sbjct: 313 NVVTYRILLSGCLRKGQ-----LGRCKRILSMMITEGCYPNREIFNSLIHAYCKSRDYSY 367

Query: 216 ARGLLQQMKAKGFVP 230
           A  L ++M   G  P
Sbjct: 368 AYKLFKKMIKCGCQP 382



 Score = 53.5 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 39/168 (23%), Positives = 73/168 (43%), Gaps = 4/168 (2%)

Query: 76  EIFHKMRTEGLTNNAVKMFDALS---KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +I H+MR+     N V     LS   + G      ++ + +  +G  P+     ++I AY
Sbjct: 300 DILHRMRSSSCIPNVVTYRILLSGCLRKGQLGRCKRILSMMITEGCYPNREIFNSLIHAY 359

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADG-NAKILGDAQKYLMEMVGK 191
             +     A ++F +M+  G  P    Y + I  + +  +  ++ IL   +K   EM+  
Sbjct: 360 CKSRDYSYAYKLFKKMIKCGCQPGYLVYNIFIGSVCSNEEQPSSDILDLVEKAYSEMLDL 419

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
           G+  N    +        A K D+A  ++ +M  KGFVPD+    + +
Sbjct: 420 GVVLNKVNVSNFARCLCGAGKFDQAFKIICEMMGKGFVPDDSTYSKVI 467


>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
          Length = 973

 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 12/188 (6%)

Query: 50  KSKLPPPYDPFKKVVDEEPTDPRNLQ---EIFHKMRTEGLTNNAV---KMFDALSKDGLT 103
           K KL P    +  +++       NLQ    I  +M   GL  NAV    +  A +K+G  
Sbjct: 409 KRKLAPTVLTYSVIING-LCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRV 467

Query: 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
            E+  +  +++++G +PDV  + ++I  +  A + +EA    M ML   + PNA+TY   
Sbjct: 468 EESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAF 527

Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           I G + A  G  +I   A +Y  EM+  G+ PN G YTA+ E   +   V EA  + + +
Sbjct: 528 IDGYSKA--GEMEI---ADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFI 582

Query: 224 KAKGFVPD 231
            ++  + D
Sbjct: 583 LSRRVLQD 590



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 74/139 (53%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   LS++G  HEA  +F+++++KG +P+   + ++I      G   +A ++   M   G
Sbjct: 597 LIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKG 656

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+  TY +LI GL  A +     +  A+    ++ G+G+ PN  TY A+ + + +++ 
Sbjct: 657 INPDIVTYNILIDGLCKAGE-----IERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKN 711

Query: 213 VDEARGLLQQMKAKGFVPD 231
              A  LL++M  +G  PD
Sbjct: 712 PTAAFQLLEEMLLRGVPPD 730



 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 71/139 (51%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + + K G   +AL++  ++ +KG  PD   ++ +IE +        A  +   M    
Sbjct: 352 LLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRK 411

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +AP   TY+V+I GL    +     L      L EMV  G++PNA  YT +  A  +  +
Sbjct: 412 LAPTVLTYSVIINGLCRCGN-----LQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGR 466

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V+E+R +L++M+ +G +PD
Sbjct: 467 VEESRMILERMREQGILPD 485



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/138 (34%), Positives = 71/138 (51%), Gaps = 5/138 (3%)

Query: 94  FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGV 153
            D  SK G    A + F ++   G +P+V  +TA+IE +   G   EA  VF  +L+  V
Sbjct: 528 IDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRV 587

Query: 154 APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV 213
             +  TY+VLI GL+     N K + +A     E+  KG+ PNA TY ++     +   V
Sbjct: 588 LQDVQTYSVLIHGLSR----NGK-MHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNV 642

Query: 214 DEARGLLQQMKAKGFVPD 231
           D+A  LL++M  KG  PD
Sbjct: 643 DKASQLLEEMCIKGINPD 660



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/212 (24%), Positives = 88/212 (41%), Gaps = 32/212 (15%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++  +M  +G+  + V    + D L K G    A  LF  I+ +G  P+ V + A+++ Y
Sbjct: 647 QLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGY 706

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLI---------------------KGLAAAA 171
             +     A ++   ML  GV P+A+ Y V++                     KG A+  
Sbjct: 707 CKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTV 766

Query: 172 DGNAKILG--------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
             N  I G        +A   L EM+ K   PN  TYT++ +   +A  + EA+ L  +M
Sbjct: 767 SFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEM 826

Query: 224 KAKGFVPDEKAVKEALIDKRGQGFRGVINILF 255
           + +  +P  K     L      G    ++ LF
Sbjct: 827 QERNVMPTAKTYTSLLHGYHNIGNMSEVSALF 858



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 72/154 (46%), Gaps = 7/154 (4%)

Query: 76  EIFHKMRTEGLTNNAV--KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           ++F +M  +G  +      + +   K G   EA  L  ++ +K  +P+ V +T++I+   
Sbjct: 752 DLFQEMLEKGFASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNC 811

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG   EA R+++ M    V P A TY  L+ G       N   + +      EMV KG+
Sbjct: 812 KAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYH-----NIGNMSEVSALFEEMVAKGI 866

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
            P+  TY  + +A+ R   V EA  L  ++  KG
Sbjct: 867 EPDKMTYYVMIDAYCREGNVMEACKLKDEILVKG 900



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 68/145 (46%), Gaps = 6/145 (4%)

Query: 102 LTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYA 161
           L  EA++L   + DKG +PD+  +  +I  +    + +EA  + + M+  G+ P   TY 
Sbjct: 256 LLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYN 315

Query: 162 VLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221
            LI G     D     +  A +   EMV  G+  N   +  +     +A K+++A  ++Q
Sbjct: 316 ALIDGFMRQGD-----IEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQ 370

Query: 222 QMKAKGFVPDEKAVKEALIDKRGQG 246
           +M  KG  PD +     LI+   +G
Sbjct: 371 EMMEKGVEPDSQTYS-LLIEGHCRG 394



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 79/160 (49%), Gaps = 12/160 (7%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   K G+  EA +L+ +++++  MP    +T+++  Y + G   E   +F  M+A G
Sbjct: 806 LIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKG 865

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAG------TYTAVFEA 206
           + P+  TY V+I   A   +GN     +A K   E++ KGM   +G      T + +   
Sbjct: 866 IEPDKMTYYVMID--AYCREGNVM---EACKLKDEILVKGMPMKSGFRLGLPTCSVIARG 920

Query: 207 FVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
           F  A  +DEA  +L+ M   G+V +  ++ + L+D    G
Sbjct: 921 FQIAGNMDEAAEVLRSMVKFGWVSNTTSLGD-LVDGNQNG 959



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 86/207 (41%), Gaps = 26/207 (12%)

Query: 55  PPYDPFKKVVDEEPTDPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFA 111
           P  D  K ++    +    L  I    R+   + N+V    + D+  K G   EA+ +F 
Sbjct: 119 PASDLIKCIIRNSDSPLAVLGSIVKCYRSCNGSPNSVIFDMLMDSYRKMGFLVEAVNVFL 178

Query: 112 QIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA 171
             K+    P +++  +++       + +   +VF  M A  V P+ YTY  +I   A   
Sbjct: 179 GPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMIS--AHCK 236

Query: 172 DGNAKILGDAQKYLME-----------------MVGKGMRPNAGTYTAVFEAFVRAQKVD 214
            GN K   DA++ L+E                 MV KG+ P+  TY  +   F   ++  
Sbjct: 237 VGNVK---DAKRVLLEMGEKARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSR 293

Query: 215 EARGLLQQMKAKGFVPDEKAVKEALID 241
           EA+ +L +M   G  P E     ALID
Sbjct: 294 EAKLMLLEMIDVGLKP-EPITYNALID 319


>gi|356518050|ref|XP_003527697.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Glycine max]
          Length = 556

 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 73/159 (45%), Gaps = 8/159 (5%)

Query: 75  QEIFHKMRTEGLTNN---AVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +F KM   GL  N      + +   K GL  E  Q++  +K  G +P+  A+  +I  
Sbjct: 213 KNLFCKMDRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYNCLISE 272

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y + G   +A +VF  M   G+A    TY +LI GL        K  G+A K + ++   
Sbjct: 273 YCNGGMVDKAFKVFAEMREKGIACGVMTYNILIGGLC-----RGKKFGEAVKLVHKVNKV 327

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           G+ PN  TY  +   F    K+D A  L  Q+K+ G  P
Sbjct: 328 GLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSP 366



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 78/159 (49%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F +MR +G+    +    +   L +     EA++L  ++   G  P++V +  +I  +
Sbjct: 284 KVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGF 343

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+   A+R+F ++ +SG++P   TY  LI G +   +     L  A   + EM  + 
Sbjct: 344 CDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVEN-----LAGALDLVKEMEERC 398

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + P+  TYT + +AF R    ++A  +   M+  G VPD
Sbjct: 399 IAPSKVTYTILIDAFARLNYTEKACEMHSLMEKSGLVPD 437



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 67/144 (46%), Gaps = 5/144 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DA ++   T +A ++ + ++  G +PDV  ++ +I      G  KEA ++F  +    
Sbjct: 409 LIDAFARLNYTEKACEMHSLMEKSGLVPDVYTYSVLIHGLCVHGNMKEASKLFKSLGEMH 468

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN+  Y  +I G     +G++     A + L EMV  GM PN  ++ +      R +K
Sbjct: 469 LQPNSVIYNTMIHG--YCKEGSSY---RALRLLNEMVHSGMVPNVASFCSTIGLLCRDEK 523

Query: 213 VDEARGLLQQMKAKGFVPDEKAVK 236
             EA  LL QM   G  P     K
Sbjct: 524 WKEAELLLGQMINSGLKPSVSLYK 547



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 76/158 (48%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F+++++ GL+   V    +    SK      AL L  +++++   P  V +T +I+A+A
Sbjct: 355 LFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILIDAFA 414

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
                ++A  +   M  SG+ P+ YTY+VLI GL     GN K   +A K    +    +
Sbjct: 415 RLNYTEKACEMHSLMEKSGLVPDVYTYSVLIHGL--CVHGNMK---EASKLFKSLGEMHL 469

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +PN+  Y  +   + +      A  LL +M   G VP+
Sbjct: 470 QPNSVIYNTMIHGYCKEGSSYRALRLLNEMVHSGMVPN 507



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 65/150 (43%), Gaps = 8/150 (5%)

Query: 85  GLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEA 141
           GL+ N V    + D   K G    A  LF ++   G +P+   ++ ++  +   G  +E 
Sbjct: 188 GLSPNVVIYTTLIDGCCKYGNVMLAKNLFCKMDRLGLVPNPHTYSVLMNGFFKQGLQREG 247

Query: 142 LRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYT 201
            +++  M  SG+ PNAY Y  LI         N  ++  A K   EM  KG+     TY 
Sbjct: 248 FQMYENMKRSGIVPNAYAYNCLISEYC-----NGGMVDKAFKVFAEMREKGIACGVMTYN 302

Query: 202 AVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +     R +K  EA  L+ ++   G  P+
Sbjct: 303 ILIGGLCRGKKFGEAVKLVHKVNKVGLSPN 332



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 90/231 (38%), Gaps = 20/231 (8%)

Query: 20  LRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPF-KKVVDEEPTDPRNLQEIF 78
           LR+ + R+ ++L   L+ +   P   Y        P YD      V    TD        
Sbjct: 62  LRLISGRIPSSLMLQLTQAHFTPCLTYT-------PLYDTIVNAYVHSHSTDQA--LTFL 112

Query: 79  HKMRTEG---LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASA 135
           H M  EG   L+N    +   L +     +A  +F ++K K  + D  +   +I+    A
Sbjct: 113 HHMIHEGHVPLSNTFNNLMCLLIRSNYFDKAWWIFNELKSKV-VLDAYSFGIMIKGCCEA 171

Query: 136 GQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP 195
           G   +  R+   +   G++PN   Y  LI G      GN  +   A+    +M   G+ P
Sbjct: 172 GYFVKGFRLLAMLEEFGLSPNVVIYTTLIDG--CCKYGNVML---AKNLFCKMDRLGLVP 226

Query: 196 NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
           N  TY+ +   F +     E   + + MK  G VP+  A    LI +   G
Sbjct: 227 NPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAY-NCLISEYCNG 276



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 5/135 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M     + G   +  +L A +++ G  P+VV +T +I+     G    A  +F +M   G
Sbjct: 164 MIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCCKYGNVMLAKNLFCKMDRLG 223

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN +TY+VL+ G          +  +  +    M   G+ PNA  Y  +   +     
Sbjct: 224 LVPNPHTYSVLMNGFFKQG-----LQREGFQMYENMKRSGIVPNAYAYNCLISEYCNGGM 278

Query: 213 VDEARGLLQQMKAKG 227
           VD+A  +  +M+ KG
Sbjct: 279 VDKAFKVFAEMREKG 293



 Score = 46.6 bits (109), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 5/111 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L   G   EA +LF  + +    P+ V +  +I  Y   G    ALR+   M+ SG
Sbjct: 444 LIHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVHSG 503

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAV 203
           + PN  ++   I  L    D   K   +A+  L +M+  G++P+   Y  V
Sbjct: 504 MVPNVASFCSTIGLL--CRDEKWK---EAELLLGQMINSGLKPSVSLYKMV 549


>gi|110741592|dbj|BAE98744.1| PPR-repeat protein [Arabidopsis thaliana]
          Length = 548

 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 69/127 (54%), Gaps = 5/127 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +A+ L  ++ + G+ PD+VA+ A+I++     +  +A   F  +   G+ PN  TY  L+
Sbjct: 173 DAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALV 232

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            GL      N+    DA + L +M+ K + PN  TY+A+ +AFV+  KV EA+ L ++M 
Sbjct: 233 NGLC-----NSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMV 287

Query: 225 AKGFVPD 231
                PD
Sbjct: 288 RMSIDPD 294



 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 71/139 (51%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D+L K    ++A   F +I+ KG  P+VV +TA++    ++ +  +A R+   M+   
Sbjct: 196 IIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKK 255

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN  TY+ L+         N K+L +A++   EMV   + P+  TY+++        +
Sbjct: 256 ITPNVITYSALLDAFVK----NGKVL-EAKELFEEMVRMSIDPDIVTYSSLVNGLCLHDR 310

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +DEA  +   M +KG + D
Sbjct: 311 IDEANQMFDLMVSKGCLAD 329



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DA  K+G   EA +LF ++      PD+V +++++       +  EA ++F  M++ G
Sbjct: 266 LLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNGLCLHDRIDEANQMFDLMVSKG 325

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
              +  +Y  LI G        AK + D  K   EM  +G+  N  TY  + + F +A  
Sbjct: 326 CLADVVSYNTLINGFC-----KAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGD 380

Query: 213 VDEARGLLQQMKAKGFVPD 231
           VD+A+    QM   G  PD
Sbjct: 381 VDKAQEFFSQMDFFGISPD 399



 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 84/182 (46%), Gaps = 10/182 (5%)

Query: 50  KSKLPPPYDPFKKVVDEEPTDPRNLQ--EIFHKMRTEGLTNNAV---KMFDALSKDGLTH 104
           K K+ P    +  ++D    + + L+  E+F +M    +  + V    + + L       
Sbjct: 253 KKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNGLCLHDRID 312

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA Q+F  +  KG + DVV++  +I  +  A + ++ +++F  M   G+  N  TY  LI
Sbjct: 313 EANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLI 372

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           +G   A D     +  AQ++  +M   G+ P+  TY  +        ++++A  + + M+
Sbjct: 373 QGFFQAGD-----VDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQ 427

Query: 225 AK 226
            +
Sbjct: 428 KR 429



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/166 (20%), Positives = 72/166 (43%), Gaps = 8/166 (4%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F +M   GL +N V    +     + G   +A + F+Q+   G  PD+  +  ++   
Sbjct: 351 KLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGL 410

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+ ++AL +F  M    +  +  TY  +I+G+          + +A      +  KG
Sbjct: 411 CDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGK-----VEEAWSLFCSLSLKG 465

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEA 238
           ++P+  TYT +         + E   L  +MK +G + ++  + + 
Sbjct: 466 LKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTLSDG 511



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 5/115 (4%)

Query: 117 GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK 176
           G   D+     VI  +    Q   AL +  +ML  G  P+  T   L+ G          
Sbjct: 115 GIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFC-----RRN 169

Query: 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            + DA   + +MV  G +P+   Y A+ ++  + ++V++A    ++++ KG  P+
Sbjct: 170 RVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPN 224



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 58/130 (44%), Gaps = 8/130 (6%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           QE F +M   G++ +      +   L  +G   +AL +F  ++ +    D+V +T VI  
Sbjct: 385 QEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRG 444

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G+ +EA  +F  +   G+ P+  TY  ++ GL         +L + +    +M  +
Sbjct: 445 MCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKG-----LLHEVEALYTKMKQE 499

Query: 192 GMRPNAGTYT 201
           G+  N  T +
Sbjct: 500 GLMKNDCTLS 509


>gi|125555763|gb|EAZ01369.1| hypothetical protein OsI_23402 [Oryza sativa Indica Group]
          Length = 619

 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 85/179 (47%), Gaps = 16/179 (8%)

Query: 78  FHKMRTEGLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F  M+ EG+  N V      DA  K+GL  EA++LFAQ++ +G   +   +T +I+    
Sbjct: 281 FAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCK 340

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
           AG+  +A+ +   M+  GV  N  TY VL+ GL        + + +A+  L  M   G+R
Sbjct: 341 AGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLC-----KERKVAEAEDVLRMMEKAGVR 395

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINI 253
            N   YT +       +  ++A GLL +MK KG   D        I   G   +G+ N+
Sbjct: 396 ANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELD--------ISLYGALIQGLCNV 446



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 81/162 (50%), Gaps = 8/162 (4%)

Query: 74  LQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           ++++  +MR  G   + V    + +   K G    A   FA +K +G M +VV  +  ++
Sbjct: 242 VEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVD 301

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
           A+   G  +EA+++F +M   G+A N +TY  LI G   A       L DA   L EMV 
Sbjct: 302 AFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGR-----LDDAIVLLDEMVR 356

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           +G+  N  TYT + +   + +KV EA  +L+ M+  G   +E
Sbjct: 357 QGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANE 398



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 5/140 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K+G   EA  LF+++K+ G +PDVV   ++I+ Y   G+  E  ++   M  SG
Sbjct: 194 VIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSG 253

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
              +  TY  LI             +  A  Y   M  +G+  N  T++   +AF +   
Sbjct: 254 CKADVVTYNALINCFCKFGR-----METAYGYFAAMKREGVMANVVTFSTFVDAFCKEGL 308

Query: 213 VDEARGLLQQMKAKGFVPDE 232
           V EA  L  QM+ +G   +E
Sbjct: 309 VREAMKLFAQMRVRGMALNE 328



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 5/105 (4%)

Query: 100 DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYT 159
           +G  +EA+QLF ++  KG   D V +TA+++ Y   G   +A  +  +M+ SG+  + + 
Sbjct: 503 NGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFC 562

Query: 160 YAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVF 204
           Y   I G       N  ++ +A++   EM+G G+ P+   Y  + 
Sbjct: 563 YTCFISGFC-----NLNMMPEAREVFSEMIGHGIAPDRAVYNCLI 602



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 77/166 (46%), Gaps = 8/166 (4%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +M  +G+  N V    + D L K+    EA  +   ++  G   + + +T +I  + 
Sbjct: 350 LLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHF 409

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
                ++AL +   M   G+  +   Y  LI+GL      N   L +A+  L +M   G+
Sbjct: 410 MNKNSEKALGLLSEMKNKGLELDISLYGALIQGLC-----NVHKLDEAKSLLTKMDESGL 464

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
            PN   YT + +A  ++ KV EA  +LQ++   GF P+   + EA+
Sbjct: 465 EPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNNGCLNEAV 510



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 71/171 (41%), Gaps = 22/171 (12%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +  KM   GL  N +    M DA  K G   EA+ +  +I D G  P+          
Sbjct: 453 KSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPN---------- 502

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G   EA+++F  M+  G++ +   Y  L+ G      GN   L DA     +M+  
Sbjct: 503 ---NGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLK--QGN---LHDAFALKAKMIDS 554

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDK 242
           G++ +   YT     F     + EAR +  +M   G  PD +AV   LI +
Sbjct: 555 GLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPD-RAVYNCLITQ 604



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 9/121 (7%)

Query: 52  KLPPPYDPFKKVVDEEPTDPRN--LQE---IFHKMRTEGLTNNAV---KMFDALSKDGLT 103
           K+P      +K++D     P N  L E   +F++M  +G++ + V    + D   K G  
Sbjct: 483 KVPEAIAMLQKILDS-GFQPNNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNL 541

Query: 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
           H+A  L A++ D G   D+  +T  I  + +     EA  VF  M+  G+AP+   Y  L
Sbjct: 542 HDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCL 601

Query: 164 I 164
           I
Sbjct: 602 I 602



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 66/146 (45%), Gaps = 17/146 (11%)

Query: 103 THEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY-- 160
           + +AL L +++K+KG   D+  + A+I+   +  +  EA  +  +M  SG+ PN   Y  
Sbjct: 414 SEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTT 473

Query: 161 ---------------AVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFE 205
                          A+L K L +    N   L +A +   EMV KGM  +   YTA+ +
Sbjct: 474 MMDACFKSGKVPEAIAMLQKILDSGFQPNNGCLNEAVQLFNEMVHKGMSLDKVVYTALLD 533

Query: 206 AFVRAQKVDEARGLLQQMKAKGFVPD 231
            +++   + +A  L  +M   G   D
Sbjct: 534 GYLKQGNLHDAFALKAKMIDSGLQLD 559


>gi|125580966|gb|EAZ21897.1| hypothetical protein OsJ_05550 [Oryza sativa Japonica Group]
          Length = 595

 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 86/172 (50%), Gaps = 8/172 (4%)

Query: 71  PRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P +  ++F++M++ G   N      + +A +++GL  +A ++F +++  GH PDV A+ A
Sbjct: 296 PMSSMKVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNA 355

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           ++EAY+ AG  + A  +F  M   G  P+  +Y +L+      A G A +  DA+    E
Sbjct: 356 LMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVD-----AYGRAGLHEDAEAVFEE 410

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
           +  +GM P   ++  +  A  R+        ++ Q+   G  PD  A+   L
Sbjct: 411 LKQRGMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNAML 462



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 77/175 (44%), Gaps = 15/175 (8%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +MR  G+  NA       D L K   T +A++++ ++K +    +    T +I  Y 
Sbjct: 232 VISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTETFTLMINVYG 291

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            A Q   +++VF  M + G  PN  TY  L+   A        +   A++   EM   G 
Sbjct: 292 KAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAFAREG-----LCEKAEEVFEEMQQAGH 346

Query: 194 RPNAGTYTAVFEAFVRA---QKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
            P+   Y A+ EA+ RA   Q   E   L+Q M   G  PD +A    L+D  G+
Sbjct: 347 EPDVYAYNALMEAYSRAGLPQGASEIFSLMQHM---GCEPD-RASYNILVDAYGR 397



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 81/164 (49%), Gaps = 12/164 (7%)

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E++ +M+ E    N      M +   K      ++++F ++K  G  P++  +TA++ A+
Sbjct: 266 EVYQRMKRERCRANTETFTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAF 325

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA--DGNAKILGDAQKYLMEMVG 190
           A  G  ++A  VF  M  +G  P+ Y Y  L++  + A    G ++I       LM+ + 
Sbjct: 326 AREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFS-----LMQHM- 379

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
            G  P+  +Y  + +A+ RA   ++A  + +++K +G  P  K+
Sbjct: 380 -GCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKS 422



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 5/105 (4%)

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
           PD++ +  +IE+Y    Q  +A  ++M +L +   P   TYA+L++        NA  L 
Sbjct: 173 PDIICYNLLIESYGKKRQLNKAESIYMALLEAQCVPTEDTYALLLRAYC-----NAGSLH 227

Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            A+  + EM   G+ PNA  Y A  +  ++A+  ++A  + Q+MK
Sbjct: 228 RAEGVISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMK 272



 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 64/169 (37%), Gaps = 30/169 (17%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + ++  K    ++A  ++  + +   +P    +  ++ AY +AG    A  V   M   G
Sbjct: 181 LIESYGKKRQLNKAESIYMALLEAQCVPTEDTYALLLRAYCNAGSLHRAEGVISEMREHG 240

Query: 153 VAPNAYTYAVLIKGLAAA------------------------------ADGNAKILGDAQ 182
           + PNA  Y   + GL  A                                G AK    + 
Sbjct: 241 IPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTETFTLMINVYGKAKQPMSSM 300

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           K   EM   G +PN  TYTA+  AF R    ++A  + ++M+  G  PD
Sbjct: 301 KVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPD 349



 Score = 47.0 bits (110), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 75/160 (46%), Gaps = 9/160 (5%)

Query: 75  QEIFHKMRTEGLT---NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +F +++  G++    + + +  A ++ G      ++ AQ+   G  PD  A  A++ A
Sbjct: 405 EAVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNAMLNA 464

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           YA AG+  +  R+F  M   G A +  TY V     A  A G A  +G  +     +  +
Sbjct: 465 YARAGRLDDMERLFAAMERRGDA-DVGTYNV-----AVNAYGRAGYVGRMEAAFAAVAAR 518

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G+  +  T+TA   A+ R ++     G++++M   G  PD
Sbjct: 519 GLAADVVTWTARMGAYARRKEYGRCVGMVEEMVDAGCYPD 558


>gi|302774757|ref|XP_002970795.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
 gi|302806735|ref|XP_002985099.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300147309|gb|EFJ13974.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300161506|gb|EFJ28121.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
          Length = 543

 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 80/149 (53%), Gaps = 9/149 (6%)

Query: 83  TEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEAL 142
           T  +T N   +     K G    A QL A++K++GH PDVV H+++++A  + G    A+
Sbjct: 103 TNHITYNT--LIGGFCKAGDMERAFQLLAEMKERGHSPDVVTHSSIVQALCNTGNLSRAM 160

Query: 143 RVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTA 202
           + F   +    AP++  + +L+ GL  A       L +A++ + EM  +G+ P+  TY +
Sbjct: 161 QYFRESVEC--APDSVLFNILVHGLCKANQ-----LSEARQMIEEMSERGIVPDVVTYNS 213

Query: 203 VFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + +   ++ +++EAR LL+ M  +   P+
Sbjct: 214 LIDGLCKSYRMEEARQLLETMVKRKVRPN 242



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 5/134 (3%)

Query: 98  SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA 157
            K G T  A QL  ++   G  PDVV   ++I  +    +  +A  V   M     APN 
Sbjct: 254 CKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLMKKGLCAPNL 313

Query: 158 YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
            TY VLI GL  A   N     +A + L EM G+G+ P+  TY ++   F R  ++++A 
Sbjct: 314 VTYNVLISGLCDAGRAN-----EACELLSEMDGRGILPDIITYNSLIGIFCRNFQIEQAF 368

Query: 218 GLLQQMKAKGFVPD 231
            +   M  +G +PD
Sbjct: 369 QIQNLMVERGVIPD 382



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 6/148 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L K     EA Q+  ++ ++G +PDVV + ++I+    + + +EA ++   M+   
Sbjct: 179 LVHGLCKANQLSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETMVKRK 238

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V PN  TY  LI G            G A + +  M+  G  P+  T+ ++   F +  K
Sbjct: 239 VRPNLVTYNTLIYGYCKTG-----CTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSK 293

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALI 240
           +D+A  +L  MK KG           LI
Sbjct: 294 IDKACEVLHLMK-KGLCAPNLVTYNVLI 320



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 63/126 (50%), Gaps = 5/126 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +A Q+   + ++G +PD +++  +  A   + +  EA  +   M  +G  PN +T+  L+
Sbjct: 366 QAFQIQNLMVERGVIPDGISYCTLAVALLKSERFDEAFALLDNMFDAGAIPNLFTFNSLM 425

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           +GL       ++ L +A+  L  M   G  P A TY  +     +A +VD+A+ +L  M 
Sbjct: 426 EGLCC-----SRRLDEARHLLAVMRRVGCDPAASTYEVLVTGLCKAGRVDDAKEVLVMMV 480

Query: 225 AKGFVP 230
           ++G  P
Sbjct: 481 SEGIQP 486



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 5/130 (3%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
           AL K     EA  L   + D G +P++    +++E    + +  EA  +   M   G  P
Sbjct: 392 ALLKSERFDEAFALLDNMFDAGAIPNLFTFNSLMEGLCCSRRLDEARHLLAVMRRVGCDP 451

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
            A TY VL+ GL  A       + DA++ L+ MV +G++P   +   +     R  K D 
Sbjct: 452 AASTYEVLVTGLCKAGR-----VDDAKEVLVMMVSEGIQPLVSSSGTIVHTLAREGKQDL 506

Query: 216 ARGLLQQMKA 225
           A     Q+ A
Sbjct: 507 ALHYFDQVVA 516


>gi|218190151|gb|EEC72578.1| hypothetical protein OsI_06020 [Oryza sativa Indica Group]
          Length = 738

 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 86/172 (50%), Gaps = 8/172 (4%)

Query: 71  PRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P +  ++F++M++ G   N      + +A +++GL  +A ++F +++  GH PDV A+ A
Sbjct: 439 PMSSMKVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNA 498

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           ++EAY+ AG  + A  +F  M   G  P+  +Y +L+      A G A +  DA+    E
Sbjct: 499 LMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVD-----AYGRAGLHEDAEAVFEE 553

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
           +  +GM P   ++  +  A  R+        ++ Q+   G  PD  A+   L
Sbjct: 554 LKQRGMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNAML 605



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 77/176 (43%), Gaps = 15/176 (8%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +MR  G+  NA       D L K   T +A++++ ++K +    +    T +I  Y 
Sbjct: 375 VISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTETFTLMINVYG 434

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            A Q   +++VF  M + G  PN  TY  L+   A        +   A++   EM   G 
Sbjct: 435 KAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAFAREG-----LCEKAEEVFEEMQQAGH 489

Query: 194 RPNAGTYTAVFEAFVRA---QKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
            P+   Y A+ EA+ RA   Q   E   L+Q M   G  PD +A    L+D  G+ 
Sbjct: 490 EPDVYAYNALMEAYSRAGLPQGASEIFSLMQHM---GCEPD-RASYNILVDAYGRA 541



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 81/164 (49%), Gaps = 12/164 (7%)

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E++ +M+ E    N      M +   K      ++++F ++K  G  P++  +TA++ A+
Sbjct: 409 EVYQRMKRERCRANTETFTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAF 468

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA--DGNAKILGDAQKYLMEMVG 190
           A  G  ++A  VF  M  +G  P+ Y Y  L++  + A    G ++I       LM+ + 
Sbjct: 469 AREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFS-----LMQHM- 522

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
            G  P+  +Y  + +A+ RA   ++A  + +++K +G  P  K+
Sbjct: 523 -GCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKS 565



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 5/105 (4%)

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
           PD++ +  +IE+Y    Q  +A  ++M +L +   P   TYA+L++        NA  L 
Sbjct: 316 PDIICYNLLIESYGKKRQLNKAESIYMALLEAQCVPTEDTYALLLRAYC-----NAGSLH 370

Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            A+  + EM   G+ PNA  Y A  +  ++A+  ++A  + Q+MK
Sbjct: 371 RAEGVISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMK 415



 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 64/169 (37%), Gaps = 30/169 (17%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + ++  K    ++A  ++  + +   +P    +  ++ AY +AG    A  V   M   G
Sbjct: 324 LIESYGKKRQLNKAESIYMALLEAQCVPTEDTYALLLRAYCNAGSLHRAEGVISEMREHG 383

Query: 153 VAPNAYTYAVLIKGLAAA------------------------------ADGNAKILGDAQ 182
           + PNA  Y   + GL  A                                G AK    + 
Sbjct: 384 IPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTETFTLMINVYGKAKQPMSSM 443

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           K   EM   G +PN  TYTA+  AF R    ++A  + ++M+  G  PD
Sbjct: 444 KVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPD 492



 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 40/193 (20%), Positives = 77/193 (39%), Gaps = 32/193 (16%)

Query: 71  PRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P+   EIF  M+  G   +      + DA  + GL  +A  +F ++K +G  P + +H  
Sbjct: 509 PQGASEIFSLMQHMGCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKSHML 568

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAA----------------- 170
           ++ A+A +G       V  ++  SG+ P+ +    ++   A A                 
Sbjct: 569 LLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNAMLNAYARAGRLDDMERLLAAMERRG 628

Query: 171 ------------ADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218
                       A G A  +G  +     +  +G+  +  T+TA   A+ R ++     G
Sbjct: 629 DADVGTYNVAVNAYGRAGYVGRMEAAFAAVAARGLAADVVTWTARMGAYARRKEYGRCVG 688

Query: 219 LLQQMKAKGFVPD 231
           ++++M   G  PD
Sbjct: 689 MVEEMVDAGCYPD 701



 Score = 38.9 bits (89), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 41/184 (22%), Positives = 72/184 (39%), Gaps = 32/184 (17%)

Query: 75  QEIFHKMRTEGLT---NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +F +++  G++    + + +  A ++ G      ++ AQ+   G  PD  A  A++ A
Sbjct: 548 EAVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNAMLNA 607

Query: 132 YASAGQGKEALRVFMRMLASG--------VAPNAYTYA---------------------V 162
           YA AG+  +  R+   M   G        VA NAY  A                     V
Sbjct: 608 YARAGRLDDMERLLAAMERRGDADVGTYNVAVNAYGRAGYVGRMEAAFAAVAARGLAADV 667

Query: 163 LIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
           +       A    K  G     + EMV  G  P+AGT   +  A    ++V++   +++ 
Sbjct: 668 VTWTARMGAYARRKEYGRCVGMVEEMVDAGCYPDAGTARVLLAACSDERQVEQVTAIVRS 727

Query: 223 MKAK 226
           M  K
Sbjct: 728 MHKK 731


>gi|145336953|ref|NP_176455.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806497|sp|Q3ECK2.2|PPR92_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62680, mitochondrial; Flags: Precursor
 gi|332195872|gb|AEE33993.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 548

 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 69/127 (54%), Gaps = 5/127 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +A+ L  ++ + G+ PD+VA+ A+I++     +  +A   F  +   G+ PN  TY  L+
Sbjct: 173 DAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALV 232

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            GL      N+    DA + L +M+ K + PN  TY+A+ +AFV+  KV EA+ L ++M 
Sbjct: 233 NGLC-----NSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMV 287

Query: 225 AKGFVPD 231
                PD
Sbjct: 288 RMSIDPD 294



 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 71/139 (51%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D+L K    ++A   F +I+ KG  P+VV +TA++    ++ +  +A R+   M+   
Sbjct: 196 IIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKK 255

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN  TY+ L+         N K+L +A++   EMV   + P+  TY+++        +
Sbjct: 256 ITPNVITYSALLDAFVK----NGKVL-EAKELFEEMVRMSIDPDIVTYSSLINGLCLHDR 310

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +DEA  +   M +KG + D
Sbjct: 311 IDEANQMFDLMVSKGCLAD 329



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DA  K+G   EA +LF ++      PD+V ++++I       +  EA ++F  M++ G
Sbjct: 266 LLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKG 325

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
              +  +Y  LI G        AK + D  K   EM  +G+  N  TY  + + F +A  
Sbjct: 326 CLADVVSYNTLINGFC-----KAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGD 380

Query: 213 VDEARGLLQQMKAKGFVPD 231
           VD+A+    QM   G  PD
Sbjct: 381 VDKAQEFFSQMDFFGISPD 399



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 84/182 (46%), Gaps = 10/182 (5%)

Query: 50  KSKLPPPYDPFKKVVDEEPTDPRNLQ--EIFHKMRTEGLTNNAV---KMFDALSKDGLTH 104
           K K+ P    +  ++D    + + L+  E+F +M    +  + V    + + L       
Sbjct: 253 KKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRID 312

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA Q+F  +  KG + DVV++  +I  +  A + ++ +++F  M   G+  N  TY  LI
Sbjct: 313 EANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLI 372

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           +G   A D     +  AQ++  +M   G+ P+  TY  +        ++++A  + + M+
Sbjct: 373 QGFFQAGD-----VDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQ 427

Query: 225 AK 226
            +
Sbjct: 428 KR 429



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/166 (20%), Positives = 72/166 (43%), Gaps = 8/166 (4%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F +M   GL +N V    +     + G   +A + F+Q+   G  PD+  +  ++   
Sbjct: 351 KLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGL 410

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+ ++AL +F  M    +  +  TY  +I+G+          + +A      +  KG
Sbjct: 411 CDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGK-----VEEAWSLFCSLSLKG 465

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEA 238
           ++P+  TYT +         + E   L  +MK +G + ++  + + 
Sbjct: 466 LKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTLSDG 511



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 5/115 (4%)

Query: 117 GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK 176
           G   D+     VI  +    Q   AL +  +ML  G  P+  T   L+ G          
Sbjct: 115 GIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFC-----RRN 169

Query: 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            + DA   + +MV  G +P+   Y A+ ++  + ++V++A    ++++ KG  P+
Sbjct: 170 RVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPN 224



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 58/130 (44%), Gaps = 8/130 (6%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           QE F +M   G++ +      +   L  +G   +AL +F  ++ +    D+V +T VI  
Sbjct: 385 QEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRG 444

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G+ +EA  +F  +   G+ P+  TY  ++ GL         +L + +    +M  +
Sbjct: 445 MCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKG-----LLHEVEALYTKMKQE 499

Query: 192 GMRPNAGTYT 201
           G+  N  T +
Sbjct: 500 GLMKNDCTLS 509


>gi|356532718|ref|XP_003534918.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 529

 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 78/149 (52%), Gaps = 6/149 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +AL K+G   EA  L A +  +G  P VV ++ +++ Y   G+ + A ++F  M+  G
Sbjct: 226 LINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMG 285

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V PN Y+Y ++I GL        K + +A   L EM+ K M P+  TY ++ +   ++ +
Sbjct: 286 VNPNVYSYNIMINGLC-----KCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGR 340

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALID 241
           +  A  L+ +M  +G  P +     +L+D
Sbjct: 341 ITSALNLMNEMHHRG-QPADVVTYTSLLD 368



 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 8/159 (5%)

Query: 74  LQEIFHK-MRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           L+E+ HK M  + +T N+  + D L K G    AL L  ++  +G   DVV +T++++A 
Sbjct: 313 LREMLHKNMVPDTVTYNS--LIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDAL 370

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
                  +A  +FM+M   G+ P  YTY  LI GL          L +AQ+    ++ KG
Sbjct: 371 CKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGR-----LKNAQELFQHLLVKG 425

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              +  TYT +     +    DEA  +  +M+  G +P+
Sbjct: 426 CCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPN 464



 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 77/181 (42%), Gaps = 35/181 (19%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L KD L +EA  L++++  +G  PD + +T +I  +   GQ   A  +   M+   
Sbjct: 156 IIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKN 215

Query: 153 VAPNAYTYAVLIKGLAAAADGNAK-----------------------------ILGDAQ- 182
           + P  Y Y +LI  L    +GN K                             ++G+ Q 
Sbjct: 216 INPGVYIYNILINAL--CKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQN 273

Query: 183 --KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
             +    MV  G+ PN  +Y  +     + ++VDEA  LL++M  K  VPD      +LI
Sbjct: 274 AKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPD-TVTYNSLI 332

Query: 241 D 241
           D
Sbjct: 333 D 333



 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 71/148 (47%), Gaps = 5/148 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DAL K+    +A  LF ++K++G  P +  +TA+I+     G+ K A  +F  +L  G
Sbjct: 366 LLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKG 425

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
              + +TY V+I GL         +  +A     +M   G  PNA T+  +  +     +
Sbjct: 426 CCIDVWTYTVMISGLCKEG-----MFDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDE 480

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALI 240
            D+A  LL +M AKG +  +  V +  +
Sbjct: 481 NDKAEKLLHEMIAKGLLVLDFKVADVFV 508



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 83/190 (43%), Gaps = 10/190 (5%)

Query: 47  VNTKSKLPPPYDPFKKVVDEEPT--DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDG 101
           V TK  + P    +  ++D      + +N ++IFH M   G+  N      M + L K  
Sbjct: 245 VMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCK 304

Query: 102 LTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYA 161
              EA+ L  ++  K  +PD V + ++I+    +G+   AL +   M   G   +  TY 
Sbjct: 305 RVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYT 364

Query: 162 VLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221
            L+  L    +     L  A    M+M  +G++P   TYTA+ +   +  ++  A+ L Q
Sbjct: 365 SLLDALCKNQN-----LDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQ 419

Query: 222 QMKAKGFVPD 231
            +  KG   D
Sbjct: 420 HLLVKGCCID 429



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 64/138 (46%), Gaps = 5/138 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K G T  A++L   I+D+   P+VV +  +I+         EA  ++  M A G
Sbjct: 121 LLNGLCKIGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARG 180

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+A TY  LI G         +++G A   L EM+ K + P    Y  +  A  +   
Sbjct: 181 IFPDAITYTTLIYGFCLL----GQLMG-AFSLLDEMILKNINPGVYIYNILINALCKEGN 235

Query: 213 VDEARGLLQQMKAKGFVP 230
           V EA+ LL  M  +G  P
Sbjct: 236 VKEAKNLLAVMTKEGIKP 253



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 75/182 (41%), Gaps = 10/182 (5%)

Query: 55  PPYDPFKKVVDEEPTDPRNLQEIF--HKMRTEGLTNNAVKM---FDALSKDGLTHEALQL 109
           PP   F K++       + L  I    +M  +G+  N V +    +     G    +  +
Sbjct: 8   PPIIEFNKILGSLAKMKQYLTAISLSKQMEVKGIRANFVTLNILINCFCHLGQMAFSFSV 67

Query: 110 FAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169
             +I   G+ PD +    +++     G+ K++L    +++A G   +  +Y  L+ GL  
Sbjct: 68  LGKILKLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLNGLCK 127

Query: 170 AADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFV 229
             +        A K L  +  +  RPN   Y  + +   + + V+EA  L  +M A+G  
Sbjct: 128 IGETRC-----AVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIF 182

Query: 230 PD 231
           PD
Sbjct: 183 PD 184


>gi|147861320|emb|CAN83994.1| hypothetical protein VITISV_031191 [Vitis vinifera]
          Length = 559

 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 65/135 (48%), Gaps = 5/135 (3%)

Query: 97  LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
           L K+   +EA  LF +I  +G  P VV+   +I  Y  +G   +  R+   M+ + V P+
Sbjct: 235 LCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPD 294

Query: 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
            +TY+VLI GL          L DA K  +EM  +G+ PN  T+T +        + D  
Sbjct: 295 VFTYSVLINGLCKEGQ-----LDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLG 349

Query: 217 RGLLQQMKAKGFVPD 231
             + QQM  KG  PD
Sbjct: 350 MEIYQQMLRKGVKPD 364



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 75/142 (52%), Gaps = 5/142 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K+G   +A +LF ++ D+G +P+ V  T +I  +   G+    + ++ +ML  G
Sbjct: 301 LINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKG 360

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V P+  TY  LI GL    D     L +A+K ++EM  +G++P+  TYT + +   +   
Sbjct: 361 VKPDVITYNTLINGLCKVGD-----LREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGD 415

Query: 213 VDEARGLLQQMKAKGFVPDEKA 234
           ++ A  + ++M  +G   D  A
Sbjct: 416 LESALEIRKEMVKEGIELDNVA 437



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 81/189 (42%), Gaps = 33/189 (17%)

Query: 75  QEIFHKMRTEGLTNNAVKMFDALSKDGLTHEA---LQLFAQIKDKGHMPDVVAHTAVIEA 131
            ++F +M   GL  N V     ++   +T  A   ++++ Q+  KG  PDV+ +  +I  
Sbjct: 315 NKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLING 374

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD------------------- 172
               G  +EA ++ + M   G+ P+ +TY +LI G     D                   
Sbjct: 375 LCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELD 434

Query: 173 ---GNAKILG--------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221
                A I G        +A++ L EM+  G++P+  TYT V   F +   V     LL+
Sbjct: 435 NVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLK 494

Query: 222 QMKAKGFVP 230
           +M+  G VP
Sbjct: 495 EMQCDGHVP 503



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 62/140 (44%), Gaps = 5/140 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   K+G    AL++  ++  +G   D VA TA+I  +   GQ  EA R    ML +G
Sbjct: 406 LIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAG 465

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+  TY ++I G     D     +    K L EM   G  P   TY  +     +  +
Sbjct: 466 IKPDDATYTMVIHGFCKKGD-----VKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQ 520

Query: 213 VDEARGLLQQMKAKGFVPDE 232
           +  A  LL  M   G VPD+
Sbjct: 521 MKNANMLLDAMLNLGVVPDD 540



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 86/207 (41%), Gaps = 26/207 (12%)

Query: 55  PPYDPFKKVVDE-EPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQI 113
           P +  +++++D   P D      + H++  E   N A  +F  + K GL    +     I
Sbjct: 208 PAWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLI 267

Query: 114 K--------DKGH-----------MPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
                    D+G             PDV  ++ +I      GQ  +A ++F+ M   G+ 
Sbjct: 268 NGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLV 327

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
           PN  T+  LI G      G A +     +   +M+ KG++P+  TY  +     +   + 
Sbjct: 328 PNDVTFTTLING--HCVTGRADL---GMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLR 382

Query: 215 EARGLLQQMKAKGFVPDEKAVKEALID 241
           EA+ L+ +M  +G  PD K     LID
Sbjct: 383 EAKKLVIEMTQRGLKPD-KFTYTMLID 408



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 61/141 (43%), Gaps = 10/141 (7%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           EI  +M  EG+  + V    +     ++G   EA +   ++ + G  PD   +T VI  +
Sbjct: 421 EIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGF 480

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD-GNAKILGDAQKYLMEMVGK 191
              G  K   ++   M   G  P   TY VL+ GL       NA +L DA      M+  
Sbjct: 481 CKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDA------MLNL 534

Query: 192 GMRPNAGTYTAVFEAFVRAQK 212
           G+ P+  TY  + E  ++A K
Sbjct: 535 GVVPDDITYNILLERTLQAWK 555


>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
 gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
          Length = 768

 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +   K G   +AL    +   +G  PD   +  ++      G  K A+ V   ML  G
Sbjct: 279 LINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGG 338

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+ YTY  LI GL    +     + +A K L +MV +   PNA TY A+  +  +  +
Sbjct: 339 LDPDIYTYNSLISGLCKLGE-----IEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENR 393

Query: 213 VDEARGLLQQMKAKGFVPD 231
           VDEA  + + + +KG +PD
Sbjct: 394 VDEATEIARLLTSKGILPD 412



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 85/181 (46%), Gaps = 16/181 (8%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +EIF +M  +G++ ++V    + D L K     +A QL  Q+  +G  PD   + +++  
Sbjct: 503 EEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTH 562

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +   G  K+A  +   M +SG  P+  TYA LI GL  A  G  ++   A + L  +  K
Sbjct: 563 FCKTGDIKKAADIVQTMTSSGCNPDIVTYATLISGLCKA--GRVQV---ASRLLRSIQMK 617

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVI 251
           GM      Y  V +A  +  +  EA  L ++M  K   PD  A+   ++      +RG+ 
Sbjct: 618 GMVLTPHAYNPVIQALFKRNRTHEAMRLFREMLDKSEPPD--AITYKIV------YRGLC 669

Query: 252 N 252
           N
Sbjct: 670 N 670



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 84/166 (50%), Gaps = 8/166 (4%)

Query: 69  TDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAH 125
           ++ ++  ++F +M+ +G   +      + D+L       EAL L  +++  G   +VV +
Sbjct: 427 SNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIY 486

Query: 126 TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185
             +I+ +    + +EA  +F  M   GV+ ++ TY  LI GL       +K + DA + +
Sbjct: 487 NTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLC-----KSKRVEDAAQLM 541

Query: 186 MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +M+ +G+RP+  TY ++   F +   + +A  ++Q M + G  PD
Sbjct: 542 DQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPD 587



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 69/135 (51%), Gaps = 5/135 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L K G   EA+++  Q+  +   P+ V + A+I +     +  EA  +   + + G
Sbjct: 349 LISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSKG 408

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+  T+  LI+GL  +++  +     A     EM GKG RP+  TY  + ++   ++K
Sbjct: 409 ILPDVCTFNSLIQGLCLSSNHKS-----AMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRK 463

Query: 213 VDEARGLLQQMKAKG 227
           ++EA  LL++M+  G
Sbjct: 464 LEEALNLLKEMELNG 478



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 79/169 (46%), Gaps = 9/169 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +I  +M +   + NAV    +  +L K+    EA ++   +  KG +PDV    ++I+  
Sbjct: 364 KILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGL 423

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             +   K A+ +F  M   G  P+ +TY +LI  L +     ++ L +A   L EM   G
Sbjct: 424 CLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCS-----SRKLEEALNLLKEMELNG 478

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
              N   Y  + + F + ++++EA  +  +M+ +G V  +      LID
Sbjct: 479 CARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQG-VSRDSVTYNTLID 526



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 67/127 (52%), Gaps = 5/127 (3%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A+ LF ++K KG  PD   +  +I++  S+ + +EAL +   M  +G A N   Y  LI 
Sbjct: 432 AMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLID 491

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G         K + +A++   EM  +G+  ++ TY  + +   ++++V++A  L+ QM  
Sbjct: 492 GFC-----KNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIM 546

Query: 226 KGFVPDE 232
           +G  PD+
Sbjct: 547 EGLRPDK 553



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 7/142 (4%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D +   +I   M + G   + V    +   L K G    A +L   I+ KG +    A+ 
Sbjct: 568 DIKKAADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQVASRLLRSIQMKGMVLTPHAYN 627

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
            VI+A     +  EA+R+F  ML     P+A TY ++ +GL    +G   I G+A  + +
Sbjct: 628 PVIQALFKRNRTHEAMRLFREMLDKSEPPDAITYKIVYRGL---CNGGGPI-GEAVDFTV 683

Query: 187 EMVGKGMRPNAGTYTAVFEAFV 208
           EM+ +G  P   ++  + E   
Sbjct: 684 EMIERGNIPEFSSFVMLAEGLC 705



 Score = 44.3 bits (103), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 5/112 (4%)

Query: 121 DVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGD 180
           DV     +I+A   A Q + A+ +   M + G++P+  T+  +++G      GN   L  
Sbjct: 202 DVSTFNILIKALCKAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEG--GN---LDG 256

Query: 181 AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           A +   +MV  G      T   +   F +  ++D+A   +Q+  ++GF PD+
Sbjct: 257 ALRIKEQMVEYGCPCTDVTVNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQ 308


>gi|359488009|ref|XP_003633686.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 579

 Score = 80.1 bits (196), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 82/186 (44%), Gaps = 16/186 (8%)

Query: 54  PPPYDPFKKVVDE--EPTDPRNLQEIFHKMRTEGLTNNA------VKMFDALSKDGLTHE 105
           PP    F K++    +      L  + H+M + G+  N       +  F  L++ G    
Sbjct: 58  PPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILINSFCHLNRVGF--- 114

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A  + A+I   GH PD    T +I      G+  EAL +F +M+  G  P+  TY  LI 
Sbjct: 115 AFSVLAKILKLGHQPDTATFTTLIRGIYVEGKIGEALHLFDKMIGEGFRPDVVTYGTLIN 174

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           GL    + +A I     + L  MV K  +PN   Y  + ++  + ++V EA  L  +M  
Sbjct: 175 GLCKVGNTSAAI-----RLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVT 229

Query: 226 KGFVPD 231
           KG  PD
Sbjct: 230 KGISPD 235



 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 82/189 (43%), Gaps = 33/189 (17%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
            +F KM  EG   + V    + + L K G T  A++L   +  K   P+V A+  +I++ 
Sbjct: 152 HLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSL 211

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADG-----------NAKILGD- 180
               Q  EA  +F  M+  G++P+ +TY  LI  L    +            ++KI+ D 
Sbjct: 212 CKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDV 271

Query: 181 ------------------AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
                             A   + +M+ +G+ PN  TYTA+ +      ++DEA  +   
Sbjct: 272 VSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDT 331

Query: 223 MKAKGFVPD 231
           M  KG +P+
Sbjct: 332 MVCKGCMPN 340



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +FH+M       N V    + D L K+    EA+ L   I+     PD+  +   I+   
Sbjct: 398 LFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMC 457

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG+ + A  +F  + + G+ P+ +TY+++I GL         +L +A K   EM   G 
Sbjct: 458 RAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRG-----LLDEASKLFREMDENGC 512

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             N   Y  +   F+R  +   A  LLQ+M A+GF  D
Sbjct: 513 TLNGCIYNTITRGFLRNNETSRAIQLLQEMVARGFSAD 550



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 68/138 (49%), Gaps = 7/138 (5%)

Query: 95  DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           DAL K+G   EA  +  ++  +G  P+VV +TA+++ +    +  EA++VF  M+  G  
Sbjct: 279 DALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCM 338

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLM-EMVGKGMRPNAGTYTAVFEAFVRAQKV 213
           PN  +Y  LI G         +I  D   YL  EM  + + P+  TY+ +       +++
Sbjct: 339 PNVISYNTLINGYCKI----QRI--DKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERL 392

Query: 214 DEARGLLQQMKAKGFVPD 231
            +A  L  +M A   +P+
Sbjct: 393 QDAIALFHEMVACSQIPN 410



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/184 (21%), Positives = 78/184 (42%), Gaps = 16/184 (8%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F  M  +G   N +    + +   K     +A+ LF ++  +  +PD V ++ +I   
Sbjct: 327 KVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGL 386

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               + ++A+ +F  M+A    PN  TY +L+  L        + L +A   L  + G  
Sbjct: 387 CHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLC-----KNRYLAEAMALLKAIEGSN 441

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD--------EKAVKEALIDKRG 244
           + P+        +   RA +++ AR L   + +KG  PD            +  L+D+  
Sbjct: 442 LDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEAS 501

Query: 245 QGFR 248
           + FR
Sbjct: 502 KLFR 505


>gi|221554580|gb|ACM24117.1| PPR protein [Raphanus sativus]
          Length = 688

 Score = 79.7 bits (195), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 72/139 (51%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D+L KDG   +A  LF ++++KG  PD+  + ++I  + S+G+  +A ++   ML   
Sbjct: 261 IIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERK 320

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           ++P+  TY  LI           K    A+ Y  EM+ +G+ PN  TY ++ + F +  +
Sbjct: 321 ISPDVVTYNALINAFVK----EGKFFEAAELY-DEMLPRGIIPNTITYNSMIDGFCKQDR 375

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +D A  +   M  KG  PD
Sbjct: 376 LDAAEDMFYLMATKGCSPD 394



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 84/159 (52%), Gaps = 9/159 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM-PDVVAHTAVIEAY 132
           +  +M  +GL    +    + D + K G T  AL L  ++++  H+ P+VV ++A+I++ 
Sbjct: 206 LLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSL 265

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+  +A  +F  M   G+ P+ +TY  +I G  ++   +     DA++ L EM+ + 
Sbjct: 266 CKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWS-----DAEQLLQEMLERK 320

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + P+  TY A+  AFV+  K  EA  L  +M  +G +P+
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPN 359



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 8/159 (5%)

Query: 74  LQEIFH-KMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           LQE+   K+  + +T NA  + +A  K+G   EA +L+ ++  +G +P+ + + ++I+ +
Sbjct: 313 LQEMLERKISPDVVTYNA--LINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGF 370

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               +   A  +F  M   G +P+ +T+  LI G   A     K + D  + L EM  +G
Sbjct: 371 CKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGA-----KRIDDGMELLHEMPRRG 425

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +  N  TY  +   F     ++ A  L QQM + G  PD
Sbjct: 426 LVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPD 464



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 78/170 (45%), Gaps = 19/170 (11%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+ H+M   GL  N V    +       G  + AL L  Q+   G  PD+V    +++  
Sbjct: 416 ELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGL 475

Query: 133 ASAGQGKEALRVFMRMLAS-----------GVAPNAYTYAVLIKGLAAAADGNAKILGDA 181
              G+ K+AL +F  M  S           GV P+  TY +LI GL        K L +A
Sbjct: 476 CDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLI----NEGKFL-EA 530

Query: 182 QKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           ++   EM  +G+ P+  TY+++ +   +  ++DEA  +   M +K F P+
Sbjct: 531 EELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPN 580



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 67/153 (43%), Gaps = 8/153 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E++ +M   G+  + +    M D L K     EA Q+F  +  K   P+VV    +I  
Sbjct: 531 EELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLING 590

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y  AG+  + L +F  M   G+  +A  Y  LI G     + N      A     EM+  
Sbjct: 591 YCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNING-----ALDIFQEMISS 645

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           G+ P+  T   +   F   ++++ A  +L+ ++
Sbjct: 646 GVYPDTITIRNMLTGFWSKEELERAVAMLEDLQ 678



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 80/178 (44%), Gaps = 19/178 (10%)

Query: 76  EIFHKMRTEGLTNNAVKMFDALSKDGLTH--------------EALQLFAQIKDKGHMPD 121
           E+F  M+   +  +A   F+ +  D LT+              EA +L+ ++  +G +PD
Sbjct: 486 EMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPD 545

Query: 122 VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDA 181
            + ++++I+      +  EA ++F+ M +   +PN  T+  LI G   A       + D 
Sbjct: 546 TITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGR-----VDDG 600

Query: 182 QKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
            +   EM  +G+  +A  Y  +   F +   ++ A  + Q+M + G  PD   ++  L
Sbjct: 601 LELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNML 658



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 7/157 (4%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F K+   GL  + V    +   L  +    EAL  F Q+ +    P+VV  T ++     
Sbjct: 137 FGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCR 196

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            G+  EA+ +  RM+  G+ P   TY  ++ G+    D     L   +K  ME V   + 
Sbjct: 197 EGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGD-TVSALNLLRK--MEEVSH-II 252

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           PN   Y+A+ ++  +  +  +A+ L  +M+ KG  PD
Sbjct: 253 PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPD 289



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 62/152 (40%), Gaps = 8/152 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E++ +M   G+  N +    M D   K      A  +F  +  KG  PDV   T +I+ Y
Sbjct: 346 ELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGY 405

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             A +  + + +   M   G+  N  TY  LI G     D NA     A     +M+  G
Sbjct: 406 CGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNA-----ALDLSQQMISSG 460

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           + P+  T   + +      K+ +A  + + M+
Sbjct: 461 VCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQ 492



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 66/154 (42%), Gaps = 8/154 (5%)

Query: 88  NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMR 147
           N  +K F + SK      AL  F +I   G  PDVV  T ++       +  EAL  F +
Sbjct: 118 NILIKCFCSCSKLPF---ALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQ 174

Query: 148 MLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAF 207
           M  +   PN  T+  L+ GL        +I+ +A   L  M+  G++P   TY  + +  
Sbjct: 175 MFETTCRPNVVTFTTLMNGLCR----EGRIV-EAVALLDRMMEDGLQPTQITYGTIVDGM 229

Query: 208 VRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
            +      A  LL++M+    +     +  A+ID
Sbjct: 230 CKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIID 263


>gi|356575428|ref|XP_003555843.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g59040-like [Glycine max]
          Length = 562

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 81/161 (50%), Gaps = 8/161 (4%)

Query: 77  IFHKMRTEGL--TNNAVK-MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M   G+  T  A   + DA S  G+  +A  +F  ++   + PD+ ++T ++ AY 
Sbjct: 333 VFEEMLDAGIRPTRKAYNILLDAFSISGMVEQAQTVFKSMRRDRYFPDLCSYTTMLSAYI 392

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
           +A   + A + F R++  G  PN  TY  LIKG A   D     L    K   EM+ +G+
Sbjct: 393 NADDMEGAEKFFKRLIQDGFEPNVVTYGTLIKGYAKIND-----LEMVMKKYEEMLMRGI 447

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
           + N    T + +A+ ++   D A    ++M++ G  PD+KA
Sbjct: 448 KANQTILTTIMDAYGKSGDFDSAVHWFKEMESNGIPPDQKA 488



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 70/154 (45%), Gaps = 5/154 (3%)

Query: 78  FHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ 137
           F +M   G+    V     +S +    E   ++ Q++     PDVV++  ++ AY  A +
Sbjct: 267 FAQMAELGIQQTTVTYNSLMSFETNYKEVSNIYDQMQRADLRPDVVSYALLVSAYGKARR 326

Query: 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA 197
            +EAL VF  ML +G+ P    Y +L+   + +      ++  AQ     M      P+ 
Sbjct: 327 EEEALAVFEEMLDAGIRPTRKAYNILLDAFSISG-----MVEQAQTVFKSMRRDRYFPDL 381

Query: 198 GTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +YT +  A++ A  ++ A    +++   GF P+
Sbjct: 382 CSYTTMLSAYINADDMEGAEKFFKRLIQDGFEPN 415



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 4/94 (4%)

Query: 76  EIFHKMRTEGLTN----NAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           EI   +RT+   +    +   +  A  K G  + A ++   +   G+ P+VV+ TA++EA
Sbjct: 121 EILEWLRTQNWWDFGKMDFFMLITAYGKLGDFNGAEKVLGLMNKNGYAPNVVSQTALMEA 180

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           Y   G+   A  +F RM   G  P+A+TY +++K
Sbjct: 181 YGKGGRYNNAEAIFRRMQKWGPEPSAFTYQIILK 214


>gi|224108788|ref|XP_002314968.1| predicted protein [Populus trichocarpa]
 gi|222864008|gb|EEF01139.1| predicted protein [Populus trichocarpa]
          Length = 662

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/175 (33%), Positives = 88/175 (50%), Gaps = 14/175 (8%)

Query: 70  DPRNLQEIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D   +Q +   M+ EG++ N    V + +A  + GL  +AL+ F +I + G  P V  + 
Sbjct: 88  DIDGIQYLLQLMKLEGISCNEDLFVIVINAYRRAGLAEQALKTFYRIGEFGCKPSVKIYN 147

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
            V++A  S  + +    ++  M   G+  N YTY +L+K L      +A     A+K L 
Sbjct: 148 HVLDALLSENKFQMINGIYNNMKRDGIELNVYTYNMLLKALCKNDRVDA-----ARKLLA 202

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           EM  KG  P+A +YT V  +  R  KV+EAR L   M+ K FVP    V  ALI+
Sbjct: 203 EMSYKGCIPDAVSYTTVVSSMCRLGKVEEAREL--SMRIKSFVP----VYNALIN 251



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 74/158 (46%), Gaps = 11/158 (6%)

Query: 77  IFHKMRTEGLTNNAVKMFDALSKD----GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +  KM   G + N V  F +L K     G   EAL L+ ++  +G  P+ VA+  +I   
Sbjct: 300 VLAKMFLRGCSPN-VHTFTSLMKGYFMGGRLCEALDLWNRMIQEGSEPNTVAYNTLIHGL 358

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
            S G+  EA+ V  +M  +GV PN  TY+ LI G A A D     L  A +   +M+  G
Sbjct: 359 CSYGKMVEAVSVSQKMERNGVFPNETTYSTLIDGFAKAGD-----LVGASEIWNKMITNG 413

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
             PN   YT + +   R    + A  L++ M A G  P
Sbjct: 414 CLPNVVVYTCMVDVLCRNSMFNHALHLIENM-ANGNCP 450



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 83/169 (49%), Gaps = 9/169 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F++M  EG+  + +    + + LS+ G    AL + A++  +G  P+V   T++++ Y
Sbjct: 264 ELFNEMAVEGIDPDVITYSTVINTLSEMGNVEMALAVLAKMFLRGCSPNVHTFTSLMKGY 323

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+  EAL ++ RM+  G  PN   Y  LI GL +        + +A     +M   G
Sbjct: 324 FMGGRLCEALDLWNRMIQEGSEPNTVAYNTLIHGLCSYGK-----MVEAVSVSQKMERNG 378

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           + PN  TY+ + + F +A  +  A  +  +M   G +P+   V   ++D
Sbjct: 379 VFPNETTYSTLIDGFAKAGDLVGASEIWNKMITNGCLPN-VVVYTCMVD 426



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 66/149 (44%), Gaps = 6/149 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +   ++    E  +LF ++  +G  PDV+ ++ VI   +  G  + AL V  +M   G
Sbjct: 249 LINGFCREHKMEEVFELFNEMAVEGIDPDVITYSTVINTLSEMGNVEMALAVLAKMFLRG 308

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            +PN +T+  L+KG           L +A      M+ +G  PN   Y  +        K
Sbjct: 309 CSPNVHTFTSLMKGYFMGGR-----LCEALDLWNRMIQEGSEPNTVAYNTLIHGLCSYGK 363

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALID 241
           + EA  + Q+M+  G  P+E      LID
Sbjct: 364 MVEAVSVSQKMERNGVFPNE-TTYSTLID 391



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 74/174 (42%), Gaps = 8/174 (4%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           EI++KM T G   N V    M D L ++ + + AL L   + +    P+ +     I+  
Sbjct: 404 EIWNKMITNGCLPNVVVYTCMVDVLCRNSMFNHALHLIENMANGNCPPNTITFNTFIKGL 463

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             +G+ + A++V  +M   G APN  TY  ++ GL      NAK   +A + + E+    
Sbjct: 464 CCSGKTEWAMKVLNQMRQYGCAPNVTTYNEVLDGLF-----NAKRTREALQIVGEIEEME 518

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
           ++ N  TY  +   F  A     A  +  ++   G  PD       +     QG
Sbjct: 519 IKSNLVTYNTILSGFCHAGMFKGALQIAGKLLVGGTKPDSITYNTVIYAYCKQG 572



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 83/191 (43%), Gaps = 38/191 (19%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           I++ M+ +G+  N      +  AL K+     A +L A++  KG +PD V++T V+ +  
Sbjct: 165 IYNNMKRDGIELNVYTYNMLLKALCKNDRVDAARKLLAEMSYKGCIPDAVSYTTVVSSMC 224

Query: 134 SAGQGKEALRVFMR------------------------------MLASGVAPNAYTYAVL 163
             G+ +EA  + MR                              M   G+ P+  TY+ +
Sbjct: 225 RLGKVEEARELSMRIKSFVPVYNALINGFCREHKMEEVFELFNEMAVEGIDPDVITYSTV 284

Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           I  L+    GN ++   A   L +M  +G  PN  T+T++ + +    ++ EA  L  +M
Sbjct: 285 INTLSEM--GNVEM---ALAVLAKMFLRGCSPNVHTFTSLMKGYFMGGRLCEALDLWNRM 339

Query: 224 KAKGFVPDEKA 234
             +G  P+  A
Sbjct: 340 IQEGSEPNTVA 350



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 59/137 (43%), Gaps = 8/137 (5%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G    A +++ ++   G +P+VV +T +++          AL +   M    
Sbjct: 389 LIDGFAKAGDLVGASEIWNKMITNGCLPNVVVYTCMVDVLCRNSMFNHALHLIENMANGN 448

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN  T+   IKGL  +          A K L +M   G  PN  TY  V +    A++
Sbjct: 449 CPPNTITFNTFIKGLCCSGKTEW-----AMKVLNQMRQYGCAPNVTTYNEVLDGLFNAKR 503

Query: 213 VDEAR---GLLQQMKAK 226
             EA    G +++M+ K
Sbjct: 504 TREALQIVGEIEEMEIK 520


>gi|125544747|gb|EAY90886.1| hypothetical protein OsI_12495 [Oryza sativa Indica Group]
          Length = 742

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 78/160 (48%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+F +M  +G++ NA+    + D L KD    +A +L  Q+  +G  P+ + + +++  
Sbjct: 481 EEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTH 540

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y   G  K+A  +   M A+G   +  TY  LI GL  A  G  ++   A K L  M  K
Sbjct: 541 YCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKA--GRTQV---ALKVLRGMRIK 595

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           GMRP    Y  V ++  R   + +A  L ++M   G  PD
Sbjct: 596 GMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPD 635



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 77/154 (50%), Gaps = 5/154 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +AL K G  H AL+LF ++K+ G  PD V +  +I+   S G+  +AL +   M ++G
Sbjct: 397 LINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTG 456

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
              +  TY  +I GL          + +A++   +M  +G+  NA T+  + +   + +K
Sbjct: 457 CPRSTITYNTIIDGLCKKMR-----IEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKK 511

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
           +D+A  L+ QM ++G  P+       L     QG
Sbjct: 512 IDDAFELINQMISEGLQPNNITYNSILTHYCKQG 545



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 6/147 (4%)

Query: 95  DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           + L K+G   EA  +  Q+ D+G +PD+     +I A  +  + +EAL +  ++   GV+
Sbjct: 329 NCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVS 388

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
           P+ YT+ +LI  L    D +      A +   EM   G  P+  TY  + +      K+ 
Sbjct: 389 PDVYTFNILINALCKVGDPHL-----ALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLG 443

Query: 215 EARGLLQQMKAKGFVPDEKAVKEALID 241
           +A  LL+ M++ G  P        +ID
Sbjct: 444 KALDLLKDMESTG-CPRSTITYNTIID 469



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +     ++G    AL++ A++ + G     V    +I  Y   G+ ++AL    + +A G
Sbjct: 222 LMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADG 281

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  TY   + GL          +G A K +  MV +G  P+  TY  V     +  +
Sbjct: 282 FEPDQITYNTFVNGLCQNDH-----VGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQ 336

Query: 213 VDEARGLLQQMKAKGFVPD 231
           ++EA+G+L QM  +G +PD
Sbjct: 337 LEEAKGILNQMVDRGCLPD 355



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 73/168 (43%), Gaps = 8/168 (4%)

Query: 75  QEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           QEI      + +T N     + L ++     AL++   +  +GH PDV  +  V+     
Sbjct: 276 QEIADGFEPDQITYNT--FVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCK 333

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            GQ +EA  +  +M+  G  P+  T+  LI   AA   GN   L +A     ++  KG+ 
Sbjct: 334 NGQLEEAKGILNQMVDRGCLPDITTFNTLI---AALCTGNR--LEEALDLARQVTVKGVS 388

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDK 242
           P+  T+  +  A  +      A  L ++MK  G  PDE      LID 
Sbjct: 389 PDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDE-VTYNTLIDN 435



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 59/139 (42%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +   K G   +AL    Q    G  PD + +   +           AL+V   M+  G
Sbjct: 257 LINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEG 316

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+ +TY +++  L          L +A+  L +MV +G  P+  T+  +  A     +
Sbjct: 317 HDPDVFTYNIVVNCLCKNGQ-----LEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNR 371

Query: 213 VDEARGLLQQMKAKGFVPD 231
           ++EA  L +Q+  KG  PD
Sbjct: 372 LEEALDLARQVTVKGVSPD 390



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 62/124 (50%), Gaps = 5/124 (4%)

Query: 109 LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
           +++++  +G  PDVV    +++A   A Q + A+ +   M + GVAP+  T+  L++G  
Sbjct: 168 VYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVIMLEEMSSRGVAPDETTFTTLMQGFV 227

Query: 169 AAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
                 A +   A+  ++EM   G      T   +   + +  +V++A G +QQ  A GF
Sbjct: 228 EEGSIEAALRVKAR--MLEM---GCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGF 282

Query: 229 VPDE 232
            PD+
Sbjct: 283 EPDQ 286



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 7/142 (4%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D +   +I   M   G   + V    + + L K G T  AL++   ++ KG  P   A+ 
Sbjct: 546 DIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYN 605

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
            V+++       ++AL +F  M   G  P+A TY ++ +GL     G  K   +A  +++
Sbjct: 606 PVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGG-GPIK---EAFDFML 661

Query: 187 EMVGKGMRPNAGTYTAVFEAFV 208
           EMV KG  P   ++  + E  +
Sbjct: 662 EMVDKGFIPEFSSFRMLAEGLL 683


>gi|255660848|gb|ACU25593.1| pentatricopeptide repeat-containing protein [Citharexylum
           ligustrinum]
          Length = 418

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 107/252 (42%), Gaps = 45/252 (17%)

Query: 2   AATAILRWLLHSPSPKRS-LRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPF 60
           +A+A+   +L +   +RS + + +  + A L+      + +  +  +  K K   P+D  
Sbjct: 47  SASAVFAAILETKGAQRSDIYVFSGLITAYLESGFLRDAIECFR--LTRKHKFWVPFDTC 104

Query: 61  KKVVDE---------------------EPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSK 99
           +KV++                       PT       + H+   EG    A  +FDA++K
Sbjct: 105 RKVLEHLMKLKYFKLVWGFYKEILECGYPTSLYFFNILMHRFCKEGEIRLAQSVFDAITK 164

Query: 100 DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYT 159
            GL                 P VV+   +I  Y   G   +  R+   M ASGV P+ YT
Sbjct: 165 CGLR----------------PSVVSFNTLINGYIRLGDLDKGFRLKTAMHASGVHPDVYT 208

Query: 160 YAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGL 219
             VLI GL   +      + +A +   EM+ KG+ PN  T+T + +   ++ +VD A  +
Sbjct: 209 NTVLINGLCKESK-----MDEANELFNEMLDKGLVPNGVTFTTLIDGHCKSGRVDLALEI 263

Query: 220 LQQMKAKGFVPD 231
            +QM  +G+ PD
Sbjct: 264 YKQMLRQGYSPD 275



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 86/201 (42%), Gaps = 35/201 (17%)

Query: 63  VVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM 119
           +  E   D  N  E+F++M  +GL  N V    + D   K G    AL+++ Q+  +G+ 
Sbjct: 216 LCKESKMDEAN--ELFNEMLDKGLVPNGVTFTTLIDGHCKSGRVDLALEIYKQMLRQGYS 273

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD------- 172
           PD++ +  +I      G  K+A  + + M   G+ P+  TY  LI G     D       
Sbjct: 274 PDLITYNTLIYGLCRKGDLKQARDLIVEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEL 333

Query: 173 ---------------GNAKILG--------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
                            A I G        DA+K L EM+  G++P  GTYT +   F +
Sbjct: 334 RKRMIEESIRLDDVAYTALISGLCQEGRAVDAEKMLREMLSVGLKPENGTYTMIINGFCK 393

Query: 210 AQKVDEARGLLQQMKAKGFVP 230
              V  A  LL++M+  G VP
Sbjct: 394 QGDVKTASKLLKEMQRDGHVP 414



 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 81/158 (51%), Gaps = 6/158 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K+    EA +LF ++ DKG +P+ V  T +I+ +  +G+   AL ++ +ML  G
Sbjct: 212 LINGLCKESKMDEANELFNEMLDKGLVPNGVTFTTLIDGHCKSGRVDLALEIYKQMLRQG 271

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            +P+  TY  LI GL    D     L  A+  ++EM  KG++P+  TYT + +   +   
Sbjct: 272 YSPDLITYNTLIYGLCRKGD-----LKQARDLIVEMSMKGLKPDKITYTTLIDGSCKEGD 326

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGV 250
           ++ A  L ++M  +    D+ A   ALI    Q  R V
Sbjct: 327 LETAFELRKRMIEESIRLDDVAYT-ALISGLCQEGRAV 363


>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g01110-like [Cucumis sativus]
          Length = 749

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 82/170 (48%), Gaps = 9/170 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           QEIF +M   G+  + V    +   L+++G  ++AL  F +++  G +PD V +T +I+ 
Sbjct: 382 QEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDG 441

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +   G   +AL++   MLA G   +  TY   + GL        K+  DA     EMV +
Sbjct: 442 FCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLC-----KKKMFADADMLFNEMVER 496

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           GM P+  T+T +   + +   +D+A  L + M      PD K     LID
Sbjct: 497 GMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPD-KVTYNTLID 545



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 65/139 (46%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M +AL KD      +   + ++ KG   D+V +  +I AY   G  +EA ++     + G
Sbjct: 263 MVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRG 322

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P   TY  ++ GL      +      A+  L+EM+  G+ PNA TY  +     R   
Sbjct: 323 MEPGLLTYNAILYGLCKIGKYDR-----AKDVLIEMLQLGLTPNAATYNTLLVEICRRDN 377

Query: 213 VDEARGLLQQMKAKGFVPD 231
           + EA+ +  +M  +G +PD
Sbjct: 378 ILEAQEIFDEMSRRGVLPD 396



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 74/149 (49%), Gaps = 6/149 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +     GL  EAL L  Q+ +KG  P++V    +I+ Y  +G   +A     +M+++G
Sbjct: 578 VLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNG 637

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P++++Y  LI G    A+     L  A   + EM  +G++ N  TY  +   F    K
Sbjct: 638 IIPDSFSYNTLIDGYLKEAN-----LEKAFILINEMEKRGLQFNIITYNLILNGFCAEGK 692

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALID 241
           + EA  +L++M   G  PD  A   +LI+
Sbjct: 693 MQEAEQVLRKMIEIGINPD-GATYSSLIN 720



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 71/160 (44%), Gaps = 14/160 (8%)

Query: 80  KMRTEGLTNNAV-------KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           KMR E L               + L K  +  +A  LF ++ ++G +PD    T +I  Y
Sbjct: 453 KMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGY 512

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD-GNAKILGDAQKYLMEMVGK 191
              G   +AL +F  M+ + + P+  TY  LI G   A + G AK L D      +M+ K
Sbjct: 513 CKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWD------DMIRK 566

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            + P+  +Y  V   F  +  + EA  L  QM  KG  P+
Sbjct: 567 DIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPN 606



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/212 (23%), Positives = 101/212 (47%), Gaps = 16/212 (7%)

Query: 24  NTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKKVV-----DEEPTDPRNLQE-- 76
           NT +N   ++ + + +D    + V  +  + P +  F  ++     D       NL E  
Sbjct: 471 NTFLNGLCKKKMFADADMLFNEMV--ERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAM 528

Query: 77  IFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           +   ++ + +T N   + D   K G    A +L+  +  K  +PD +++  V+  + S+G
Sbjct: 529 VRTNLKPDKVTYNT--LIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSG 586

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196
              EAL +  +ML  G+ PN  T   LIKG   + D     +  A +YL +M+  G+ P+
Sbjct: 587 LLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGD-----MPKAYEYLSKMISNGIIPD 641

Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
           + +Y  + + +++   +++A  L+ +M+ +G 
Sbjct: 642 SFSYNTLIDGYLKEANLEKAFILINEMEKRGL 673



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 75/161 (46%), Gaps = 10/161 (6%)

Query: 75  QEIFHKMRTEGLTNNAVK----MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           +++  +M   GLT NA      + +   +D +  EA ++F ++  +G +PD+V+ +++I 
Sbjct: 347 KDVLIEMLQLGLTPNAATYNTLLVEICRRDNIL-EAQEIFDEMSRRGVLPDLVSFSSLIG 405

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
             A  G   +AL  F  M  SG+ P+   Y +LI G           L DA K   EM+ 
Sbjct: 406 VLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNG-----ALSDALKMRDEMLA 460

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +G   +  TY        + +   +A  L  +M  +G VPD
Sbjct: 461 RGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPD 501



 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 70/173 (40%), Gaps = 8/173 (4%)

Query: 72  RNLQEIFHKMRTEGLT---NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R   E F  +R +G++   N   K+   L + G    A +++ ++   G   +V     +
Sbjct: 204 REGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIM 263

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           + A     + +  +     M   GV  +  TY  LI   A   +G   ++ +A + L   
Sbjct: 264 VNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLIN--AYCREG---LVEEAFQLLNSF 318

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
             +GM P   TY A+     +  K D A+ +L +M   G  P+       L++
Sbjct: 319 SSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVE 371


>gi|115454009|ref|NP_001050605.1| Os03g0597200 [Oryza sativa Japonica Group]
 gi|28875991|gb|AAO60000.1| putative pentatricopeptide repeat protein [Oryza sativa Japonica
           Group]
 gi|108709658|gb|ABF97453.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113549076|dbj|BAF12519.1| Os03g0597200 [Oryza sativa Japonica Group]
          Length = 742

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 78/160 (48%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+F +M  +G++ NA+    + D L KD    +A +L  Q+  +G  P+ + + +++  
Sbjct: 481 EEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTH 540

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y   G  K+A  +   M A+G   +  TY  LI GL  A  G  ++   A K L  M  K
Sbjct: 541 YCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKA--GRTQV---ALKVLRGMRIK 595

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           GMRP    Y  V ++  R   + +A  L ++M   G  PD
Sbjct: 596 GMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPD 635



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 77/154 (50%), Gaps = 5/154 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +AL K G  H AL+LF ++K+ G  PD V +  +I+   S G+  +AL +   M ++G
Sbjct: 397 LINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTG 456

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
              +  TY  +I GL          + +A++   +M  +G+  NA T+  + +   + +K
Sbjct: 457 CPRSTITYNTIIDGLCKKMR-----IEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKK 511

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
           +D+A  L+ QM ++G  P+       L     QG
Sbjct: 512 IDDAFELINQMISEGLQPNNITYNSILTHYCKQG 545



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 6/147 (4%)

Query: 95  DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           + L K+G   EA  +  Q+ D+G +PD+     +I A  +  + +EAL +  ++   GV+
Sbjct: 329 NCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVS 388

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
           P+ YT+ +LI  L    D +      A +   EM   G  P+  TY  + +      K+ 
Sbjct: 389 PDVYTFNILINALCKVGDPHL-----ALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLG 443

Query: 215 EARGLLQQMKAKGFVPDEKAVKEALID 241
           +A  LL+ M++ G  P        +ID
Sbjct: 444 KALDLLKDMESTG-CPRSTITYNTIID 469



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 80/191 (41%), Gaps = 33/191 (17%)

Query: 74  LQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           L+ ++ +M   G+  + V    +  AL +      A+ +  ++  +G  PD    T +++
Sbjct: 165 LESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQ 224

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA--------------AAADG--- 173
            +   G  + ALRV  RML  G +    T  VLI G                  ADG   
Sbjct: 225 GFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEP 284

Query: 174 -----NAKI--------LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
                N  +        +G A K +  MV +G  P+  TY  V     +  +++EA+G+L
Sbjct: 285 DQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGIL 344

Query: 221 QQMKAKGFVPD 231
            QM  +G +PD
Sbjct: 345 NQMVDRGCLPD 355



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 73/168 (43%), Gaps = 8/168 (4%)

Query: 75  QEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           QEI      + +T N     + L ++     AL++   +  +GH PDV  +  V+     
Sbjct: 276 QEIADGFEPDQITYNT--FVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCK 333

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            GQ +EA  +  +M+  G  P+  T+  LI   AA   GN   L +A     ++  KG+ 
Sbjct: 334 NGQLEEAKGILNQMVDRGCLPDITTFNTLI---AALCTGNR--LEEALDLARQVTVKGVS 388

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDK 242
           P+  T+  +  A  +      A  L ++MK  G  PDE      LID 
Sbjct: 389 PDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDE-VTYNTLIDN 435



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 59/139 (42%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +   K G   +AL    Q    G  PD + +   +           AL+V   M+  G
Sbjct: 257 LINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEG 316

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+ +TY +++  L          L +A+  L +MV +G  P+  T+  +  A     +
Sbjct: 317 HDPDVFTYNIVVNCLCKNGQ-----LEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNR 371

Query: 213 VDEARGLLQQMKAKGFVPD 231
           ++EA  L +Q+  KG  PD
Sbjct: 372 LEEALDLARQVTVKGVSPD 390



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 62/124 (50%), Gaps = 5/124 (4%)

Query: 109 LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
           +++++  +G  PDVV    +++A   A Q + A+ +   M + GVAP+  T+  L++G  
Sbjct: 168 VYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFV 227

Query: 169 AAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
                 A +   A+  ++EM   G      T   +   + +  +V++A G +QQ  A GF
Sbjct: 228 EEGSIEAALRVKAR--MLEM---GCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGF 282

Query: 229 VPDE 232
            PD+
Sbjct: 283 EPDQ 286



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 7/142 (4%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D +   +I   M   G   + V    + + L K G T  AL++   ++ KG  P   A+ 
Sbjct: 546 DIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYN 605

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
            V+++       ++AL +F  M   G  P+A TY ++ +GL     G  K   +A  +++
Sbjct: 606 PVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGG-GPIK---EAFDFML 661

Query: 187 EMVGKGMRPNAGTYTAVFEAFV 208
           EMV KG  P   ++  + E  +
Sbjct: 662 EMVDKGFIPEFSSFRMLAEGLL 683


>gi|225427482|ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 592

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 59/126 (46%), Gaps = 5/126 (3%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
              + A+I   GH PD    T +I      G+  EAL +F +M+  G  PN  TY  LI 
Sbjct: 128 GFSVLAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVGEGFQPNGVTYGTLIH 187

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           GL    +  A I     + L  MV K   PN  TY  + +   + ++V+EA  +  +M A
Sbjct: 188 GLCKVGNSRAAI-----RLLRSMVQKNCEPNVITYNTIIDCLFKDRQVNEALNIFSEMIA 242

Query: 226 KGFVPD 231
           KG  P+
Sbjct: 243 KGISPN 248



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 76/167 (45%), Gaps = 8/167 (4%)

Query: 72  RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R+   +FH+M   G   + V    + D L K     +A+ +   I+     PD+ ++  V
Sbjct: 406 RDAIALFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIV 465

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I+     G+ + A  +F  + + G+ P+ +TY ++I GL         +L +A K   EM
Sbjct: 466 IDGMCRVGELEAAGDLFSSLSSKGLHPDVWTYTIMINGLCLQG-----LLAEATKLFREM 520

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAV 235
              G  P+  TY  +   F+R  +   A  LLQ+M  +GF  D   +
Sbjct: 521 NTDGCSPDDCTYNLITRGFLRNNETLSAIQLLQEMLGRGFSADASTI 567



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 71/159 (44%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
            +F KM  EG   N V    +   L K G +  A++L   +  K   P+V+ +  +I+  
Sbjct: 165 HLFDKMVGEGFQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCL 224

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               Q  EAL +F  M+A G++PN  TY  +I GL   ++            + EMV   
Sbjct: 225 FKDRQVNEALNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWK-----HVATLMNEMVDSK 279

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + PN   +T + +A  +   V  A  ++  M  +G  PD
Sbjct: 280 IMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRGVEPD 318



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 68/140 (48%), Gaps = 7/140 (5%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DAL K+G+   A  +   +  +G  PDVV +TA+++ +    +  EA +VF  M+  G
Sbjct: 290 LVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKG 349

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM-EMVGKGMRPNAGTYTAVFEAFVRAQ 211
            APN  +Y+ LI G         +I  D   YL  EM  + + PN  TY  +        
Sbjct: 350 CAPNVISYSTLINGYCKI----QRI--DKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVG 403

Query: 212 KVDEARGLLQQMKAKGFVPD 231
           ++ +A  L  +M A G +PD
Sbjct: 404 RLRDAIALFHEMVASGQIPD 423



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 92/214 (42%), Gaps = 19/214 (8%)

Query: 21  RITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKKVVDEEPTDPRNLQEIFHK 80
           ++ N+R    L RS+   + +P     NT        D   K  D +  +  N   IF +
Sbjct: 191 KVGNSRAAIRLLRSMVQKNCEPNVITYNT------IIDCLFK--DRQVNEALN---IFSE 239

Query: 81  MRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ 137
           M  +G++ N      +   L K         L  ++ D   MP+VV  T +++A    G 
Sbjct: 240 MIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVDALCKEGM 299

Query: 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA 197
              A  V   M+  GV P+  TY  L+ G    ++     + +A K    MV KG  PN 
Sbjct: 300 VTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSE-----MDEADKVFDTMVRKGCAPNV 354

Query: 198 GTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +Y+ +   + + Q++D+A  L ++M  +  VP+
Sbjct: 355 ISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPN 388



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 73/159 (45%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F  M  +G   N +    + +   K     +A+ LF ++  +  +P++V +  +I   
Sbjct: 340 KVFDTMVRKGCAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLIHGL 399

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+ ++A+ +F  M+ASG  P+  TY +L+  L        + L  A   L  + G  
Sbjct: 400 CHVGRLRDAIALFHEMVASGQIPDLVTYRILLDYLC-----KTRHLDQAMAMLKAIEGSN 454

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + P+  +Y  V +   R  +++ A  L   + +KG  PD
Sbjct: 455 LAPDIQSYNIVIDGMCRVGELEAAGDLFSSLSSKGLHPD 493



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 5/136 (3%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L  +G   EAL LF ++  +G  P+ V +  +I      G  + A+R+   M+     P
Sbjct: 153 GLCVEGKIGEALHLFDKMVGEGFQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEP 212

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           N  TY  +I  L      N     +A     EM+ KG+ PN  TY ++     +  +   
Sbjct: 213 NVITYNTIIDCLFKDRQVN-----EALNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKH 267

Query: 216 ARGLLQQMKAKGFVPD 231
              L+ +M     +P+
Sbjct: 268 VATLMNEMVDSKIMPN 283



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 5/113 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D + + G    A  LF+ +  KG  PDV  +T +I      G   EA ++F  M   G
Sbjct: 465 VIDGMCRVGELEAAGDLFSSLSSKGLHPDVWTYTIMINGLCLQGLLAEATKLFREMNTDG 524

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFE 205
            +P+  TY ++ +G       N + L  A + L EM+G+G   +A T T + E
Sbjct: 525 CSPDDCTYNLITRGFLR----NNETLS-AIQLLQEMLGRGFSADASTITLIVE 572



 Score = 38.9 bits (89), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 30/129 (23%), Positives = 52/129 (40%), Gaps = 9/129 (6%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EAL  F ++      P VV    ++ + A+       L +  +M + G+  + YT A++I
Sbjct: 57  EALSSFNRMLHMQPPPSVVDFAKILTSIANMKHYSTVLSLSKQMDSLGIPSDVYTLAIVI 116

Query: 165 KGLAAA--ADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
                    D    +L    K        G +P+  T+T +        K+ EA  L  +
Sbjct: 117 NSFCHLNRVDFGFSVLAKIFKL-------GHQPDTATFTTLIRGLCVEGKIGEALHLFDK 169

Query: 223 MKAKGFVPD 231
           M  +GF P+
Sbjct: 170 MVGEGFQPN 178


>gi|110738150|dbj|BAF01006.1| hypothetical protein [Arabidopsis thaliana]
          Length = 642

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 76/146 (52%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+G  +E   +F  +  KG  P+V  +T +I+ YA +G  ++A+R+  RM+  G  P
Sbjct: 318 GLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKP 377

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY+V++ GL      N ++  +A  Y       G+  N+  Y+++ +   +A +VDE
Sbjct: 378 DVVTYSVVVNGLCK----NGRV-EEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDE 432

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      ALID
Sbjct: 433 AERLFEEMSEKGCTRDSYCYN-ALID 457



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 72/132 (54%), Gaps = 5/132 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ D+G  PDVV ++ V+      G+ +EAL  F      G
Sbjct: 350 LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDG 409

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +A N+  Y+ LI GL     G A  + +A++   EM  KG   ++  Y A+ +AF + +K
Sbjct: 410 LAINSMFYSSLIDGL-----GKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRK 464

Query: 213 VDEARGLLQQMK 224
           VDEA  L ++M+
Sbjct: 465 VDEAIALFKRME 476



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 74/160 (46%), Gaps = 9/160 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           + FH  R +GL  N++    + D L K G   EA +LF ++ +KG   D   + A+I+A+
Sbjct: 400 DYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAF 459

Query: 133 ASAGQGKEALRVFMRMLAS-GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               +  EA+ +F RM    G     YTY +L+ G+            +A K    M+ K
Sbjct: 460 TKHRKVDEAIALFKRMEEEEGCDQTVYTYTILLSGMFKEHRNE-----EALKLWDMMIDK 514

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G+ P A  + A+      + KV  A  +L ++   G + D
Sbjct: 515 GITPTAACFRALSTGLCLSGKVARACKILDELAPMGVILD 554



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 64/156 (41%), Gaps = 6/156 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M  A   D      + L+ ++ +KG      A + VI      G+  E   VF  M+  G
Sbjct: 280 MIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKG 339

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN   Y VLI G A +       + DA + L  M+ +G +P+  TY+ V     +  +
Sbjct: 340 SKPNVAIYTVLIDGYAKSGS-----VEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGR 394

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFR 248
           V+EA       +  G   +      +LID  G+  R
Sbjct: 395 VEEALDYFHTCRFDGLAIN-SMFYSSLIDGLGKAGR 429



 Score = 47.0 bits (110), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 60/144 (41%), Gaps = 9/144 (6%)

Query: 88  NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMR 147
           N  +K F  L   G+  E L ++ ++K+ G  P +  +  ++    SA     A RVF  
Sbjct: 173 NALIKSFGKL---GMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEV 229

Query: 148 MLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAF 207
           M +  + P+  TY  +IKG   A          A + L +M  +G   +  TY  + +A 
Sbjct: 230 MESGRIKPDIVTYNTMIKGYCKAGQTQK-----AMEKLRDMETRGHEADKITYMTMIQAC 284

Query: 208 VRAQKVDEARGLLQQMKAKGF-VP 230
                      L Q+M  KG  VP
Sbjct: 285 YADSDFGSCVALYQEMDEKGIQVP 308


>gi|242048026|ref|XP_002461759.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
 gi|241925136|gb|EER98280.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
          Length = 896

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 92/205 (44%), Gaps = 13/205 (6%)

Query: 52  KLPPPYDPFKKVVDEEPTDPRNLQE---IFHKMRTEGLTNNAV---KMFDALSKDGLTHE 105
           ++PP    +  ++D      R L E   +F + +++G+  N +    + D   K G   E
Sbjct: 631 RVPPTVATYGSIIDGLAKIDR-LDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDE 689

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A  +  ++  KG  P+V    ++++A   A +  EAL  F  M     +PN YTY++LI 
Sbjct: 690 AYLILEEMMKKGLTPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILIN 749

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           GL      N   +     +  EM  +G+ PN  TYT +     +   + +A  L ++ KA
Sbjct: 750 GLCRVQKYNKAFV-----FWQEMQKQGLVPNVVTYTTMIAGLAKVGNITDACSLFERFKA 804

Query: 226 KGFVPDEKAVKEALIDKRGQGFRGV 250
            G  PD  +   ALI+      R +
Sbjct: 805 NGGTPDAASFN-ALIEGMSHANRAI 828



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 79/174 (45%), Gaps = 9/174 (5%)

Query: 75  QEIFHKMRTEGLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            +IF +M   G   +   +    D + K G   +   +F  IK  G +PDV +++ +I  
Sbjct: 516 HKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHG 575

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              AGQ +E   +F  M   G A +A  Y  ++ G   +       L  A + L EM  K
Sbjct: 576 LTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGK-----LDKAYEVLEEMKVK 630

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
            + P   TY ++ +   +  ++DEA  L ++ K+KG +     V  +LID  G+
Sbjct: 631 RVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSKG-IELNVIVYSSLIDGFGK 683



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 79/159 (49%), Gaps = 9/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           + FH+++++GL  + V    M   L K G   EA +LF Q++ +  +P   A+  +I  Y
Sbjct: 273 KFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETERAVPCAYAYNTMIMGY 332

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
            SAGQ + A ++  ++   G  P+  ++  ++  L     G  + + +A   L E + K 
Sbjct: 333 GSAGQFENAYKLLDQLKERGCIPSVVSFNSILTCL-----GKKRKVDEALT-LFEAMKKD 386

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             PN+ TY  + +    A KV+EA  +  +M+  G  P+
Sbjct: 387 AEPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGLFPN 425



 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 64/130 (49%), Gaps = 5/130 (3%)

Query: 95  DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           D   K G    A + F ++K +G  PD V++T++I     AG+  EA  +F +M      
Sbjct: 260 DCFGKAGNVDMAWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETERAV 319

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
           P AY Y  +I G      G+A    +A K L ++  +G  P+  ++ ++     + +KVD
Sbjct: 320 PCAYAYNTMIMGY-----GSAGQFENAYKLLDQLKERGCIPSVVSFNSILTCLGKKRKVD 374

Query: 215 EARGLLQQMK 224
           EA  L + MK
Sbjct: 375 EALTLFEAMK 384



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 67/141 (47%), Gaps = 9/141 (6%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L+K G   E   +F  +K +G   D  A+ AV++ +  +G+  +A  V   M    
Sbjct: 572 LIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAYEVLEEMKVKR 631

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKI--LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
           V P   TY  +I GL       AKI  L +A     E   KG+  N   Y+++ + F + 
Sbjct: 632 VPPTVATYGSIIDGL-------AKIDRLDEAYMLFEEAKSKGIELNVIVYSSLIDGFGKV 684

Query: 211 QKVDEARGLLQQMKAKGFVPD 231
            ++DEA  +L++M  KG  P+
Sbjct: 685 GRIDEAYLILEEMMKKGLTPN 705



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 70/162 (43%), Gaps = 8/162 (4%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           I  +M  +GLT N      + DAL K    +EAL  F  +K+    P+   ++ +I    
Sbjct: 693 ILEEMMKKGLTPNVYTWNSLMDALVKAEEINEALICFQSMKEMKCSPNTYTYSILINGLC 752

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
              +  +A   +  M   G+ PN  TY  +I GLA    GN   + DA          G 
Sbjct: 753 RVQKYNKAFVFWQEMQKQGLVPNVVTYTTMIAGLAKV--GN---ITDACSLFERFKANGG 807

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAV 235
            P+A ++ A+ E    A +  EA  + ++ + KG   + KA 
Sbjct: 808 TPDAASFNALIEGMSHANRAIEAYHVFEETRLKGCRINVKAC 849



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 85/204 (41%), Gaps = 44/204 (21%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F      G   N+V    + D L K G   +A +LF  + D GH  + V +T++I  +
Sbjct: 447 EMFETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRLFENMLDTGHNANPVVYTSLIRNF 506

Query: 133 ASAGQGKEALRVFMRMLASGVAP-----NAY----------------------------- 158
              G+ ++  ++F  M   G  P     N Y                             
Sbjct: 507 FMHGRKEDGHKIFKEMNRRGCQPDLTLLNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDV 566

Query: 159 -TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
            +Y++LI GL  A  G A+   +       M  +G   +A  Y AV + F ++ K+D+A 
Sbjct: 567 RSYSILIHGLTKA--GQAR---ETSSIFHAMKQQGFALDARAYNAVVDGFCKSGKLDKAY 621

Query: 218 GLLQQMKAKGFVPDEKAVKEALID 241
            +L++MK K  VP   A   ++ID
Sbjct: 622 EVLEEMKVKR-VPPTVATYGSIID 644



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 63/125 (50%), Gaps = 5/125 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           AL+L  Q+++ G+   V   T ++ A A  G+ + AL +   +  S + P+   Y V I 
Sbjct: 201 ALELLRQMQEVGYEVGVPLFTTLVRALAREGRVEGALALVDEVKGSCLEPDIVLYNVCID 260

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
               A  GN  +   A K+  E+  +G++P+  +YT++     +A ++ EA  L  QM+ 
Sbjct: 261 CFGKA--GNVDM---AWKFFHELKSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQMET 315

Query: 226 KGFVP 230
           +  VP
Sbjct: 316 ERAVP 320



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 74/173 (42%), Gaps = 14/173 (8%)

Query: 61  KKVVDEEPTDPRNLQEIFHKMRTEGLTNNAVK--MFDALSKDGLTHEALQLFAQIKDKGH 118
           K+ VDE  T       +F  M+ +   N++    + D L   G   EA  +  +++  G 
Sbjct: 370 KRKVDEALT-------LFEAMKKDAEPNSSTYNIIIDMLCMAGKVEEAYMIRDEMEHAGL 422

Query: 119 MPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKIL 178
            P+++    +++    A + + A  +F      G  PN+ TY  LI GL     GN   +
Sbjct: 423 FPNLLTVNIMVDRLCKAKKFEPAYEMFETASQRGCNPNSVTYCSLIDGL--GKKGN---V 477

Query: 179 GDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            DA +    M+  G   N   YT++   F    + ++   + ++M  +G  PD
Sbjct: 478 DDAYRLFENMLDTGHNANPVVYTSLIRNFFMHGRKEDGHKIFKEMNRRGCQPD 530



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/124 (25%), Positives = 64/124 (51%), Gaps = 5/124 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L +    ++A   + +++ +G +P+VV +T +I   A  G   +A  +F R  A+G
Sbjct: 747 LINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMIAGLAKVGNITDACSLFERFKANG 806

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+A ++  LI+G++ A   N  I  +A     E   KG R N     ++ +A  +A+ 
Sbjct: 807 GTPDAASFNALIEGMSHA---NRAI--EAYHVFEETRLKGCRINVKACISLLDALNKAEC 861

Query: 213 VDEA 216
           +++A
Sbjct: 862 LEQA 865


>gi|255571081|ref|XP_002526491.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534166|gb|EEF35882.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 884

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 74/159 (46%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLT-NNAV--KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E F +M  +G   NN V   +   L   G  HEAL+L  +++ KG +PD+     +I  +
Sbjct: 614 EAFSEMSKKGFVPNNFVYNSLIHGLCNCGKLHEALKLEREMRQKGLLPDIFTTNIIINGF 673

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+ K A   F  M   GV P+  TY  LI G     D     +  A ++L +M   G
Sbjct: 674 CKEGRMKSAFDAFAEMHHIGVTPDTVTYNTLIGGYCKVLD-----MVSADEFLNKMYASG 728

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             P+  TY    + F  +QK+  A  +L ++ A G VP+
Sbjct: 729 WDPDITTYNIRIQGFCSSQKISRAVTMLDELIAVGVVPN 767



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/139 (30%), Positives = 67/139 (48%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M   LSK G   EA  L  ++ DKG   + VA T +++ Y   G    A  ++  M A G
Sbjct: 529 MLLGLSKKGRLQEARDLLYKMIDKGLPVNKVAFTVLLDGYFKVGDTAGAHSLWYEMEARG 588

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+A  ++  I GL+ A      ++ +A +   EM  KG  PN   Y ++        K
Sbjct: 589 ICPDAIAFSAFIDGLSKAG-----LVEEAYEAFSEMSKKGFVPNNFVYNSLIHGLCNCGK 643

Query: 213 VDEARGLLQQMKAKGFVPD 231
           + EA  L ++M+ KG +PD
Sbjct: 644 LHEALKLEREMRQKGLLPD 662



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 48/160 (30%), Positives = 73/160 (45%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +++ +KM  +GL  N V    + D   K G T  A  L+ +++ +G  PD +A +A I+ 
Sbjct: 543 RDLLYKMIDKGLPVNKVAFTVLLDGYFKVGDTAGAHSLWYEMEARGICPDAIAFSAFIDG 602

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
            + AG  +EA   F  M   G  PN + Y  LI GL      N   L +A K   EM  K
Sbjct: 603 LSKAGLVEEAYEAFSEMSKKGFVPNNFVYNSLIHGLC-----NCGKLHEALKLEREMRQK 657

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G+ P+  T   +   F +  ++  A     +M   G  PD
Sbjct: 658 GLLPDIFTTNIIINGFCKEGRMKSAFDAFAEMHHIGVTPD 697



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 43/141 (30%), Positives = 70/141 (49%), Gaps = 6/141 (4%)

Query: 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
           G   EA+Q    + +KG  P VVA  +VI AY+ AG    A + +  ML  G+ P++ T 
Sbjct: 467 GQLDEAMQFLEDMLEKGMPPSVVAFNSVIAAYSRAGFEDNAHKAYKIMLMFGLVPSSSTC 526

Query: 161 AVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
           + ++ GL+         L +A+  L +M+ KG+  N   +T + + + +      A  L 
Sbjct: 527 SSMLLGLSKKGR-----LQEARDLLYKMIDKGLPVNKVAFTVLLDGYFKVGDTAGAHSLW 581

Query: 221 QQMKAKGFVPDEKAVKEALID 241
            +M+A+G  PD  A   A ID
Sbjct: 582 YEMEARGICPDAIAF-SAFID 601



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 46/177 (25%), Positives = 80/177 (45%), Gaps = 12/177 (6%)

Query: 75  QEIFHKMRTEGLTNNAVKMFDALS----KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           ++IF  ++  GL+ N V M++ L     K     +A  L+ +++DKG  PD      ++ 
Sbjct: 368 RKIFEGIQEVGLSPN-VAMYNTLMSGYFKARDVCQANMLYEEMRDKGIAPDGATFNILVA 426

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
                G+  ++  +F     S + P+   Y V + GL  A       L +A ++L +M+ 
Sbjct: 427 GNYKYGKEADSYELFRDWSLSSLVPDCSLYDVSVAGLCWAGQ-----LDEAMQFLEDMLE 481

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL--IDKRGQ 245
           KGM P+   + +V  A+ RA   D A    + M   G VP        L  + K+G+
Sbjct: 482 KGMPPSVVAFNSVIAAYSRAGFEDNAHKAYKIMLMFGLVPSSSTCSSMLLGLSKKGR 538



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 33/112 (29%), Positives = 57/112 (50%), Gaps = 5/112 (4%)

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
           PDV A+  +I AY   G+  +AL     M+ +G  P+  T++ +I   A   +GN   + 
Sbjct: 311 PDVYAYNILINAYRIRGRTSDALGFLHLMIKNGCKPSLITFSTIIT--AFCNEGN---VV 365

Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +A+K    +   G+ PN   Y  +   + +A+ V +A  L ++M+ KG  PD
Sbjct: 366 EARKIFEGIQEVGLSPNVAMYNTLMSGYFKARDVCQANMLYEEMRDKGIAPD 417



 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +A    G T +AL     +   G  P ++  + +I A+ + G   EA ++F  +   G
Sbjct: 319 LINAYRIRGRTSDALGFLHLMIKNGCKPSLITFSTIITAFCNEGNVVEARKIFEGIQEVG 378

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           ++PN   Y  L+ G   A D     +  A     EM  KG+ P+  T+  +     +  K
Sbjct: 379 LSPNVAMYNTLMSGYFKARD-----VCQANMLYEEMRDKGIAPDGATFNILVAGNYKYGK 433

Query: 213 VDEARGLLQQMKAKGFVPD 231
             ++  L +       VPD
Sbjct: 434 EADSYELFRDWSLSSLVPD 452


>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1043

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 75/154 (48%), Gaps = 6/154 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DAL K G   EA + F  +K+    P+VV +T ++   A AG+ +EA  VF+ M  + 
Sbjct: 328 LIDALVKSGNIDEACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENN 387

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            +P+A  Y  LI GL  A + +      A     EM  +G+ PN  TY  +     +A +
Sbjct: 388 CSPDAIAYNTLIDGLGKAGEADM-----ACGLFKEMKDRGLVPNLRTYNIMISVLGKAGR 442

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
             EA  L   +K +G VPD       LID  G+G
Sbjct: 443 QPEAWQLFHDLKEQGAVPD-VFTYNTLIDVLGKG 475



 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 71/139 (51%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K G   EA  +F ++ ++GH PDVVA+T++++     G+   AL +F  M    
Sbjct: 744 LLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKR 803

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  TY+ LI  L     G    + +A  +    + KG  PN G Y+++ ++F +   
Sbjct: 804 CVPDVVTYSSLIDSL-----GKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGM 858

Query: 213 VDEARGLLQQMKAKGFVPD 231
           VD A  L ++M+ +   P+
Sbjct: 859 VDRALELFEEMQRRQCPPN 877



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/139 (33%), Positives = 67/139 (48%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D+L K+G   EA   F     KG  P+V  ++++I+++   G    AL +F  M    
Sbjct: 814 LIDSLGKEGRVEEAYYFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQ 873

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN  TY  L+ GLA A   N      A+K L EM   G  P+  TY  + +   +   
Sbjct: 874 CPPNIVTYNNLLSGLAKAGRLNV-----AEKLLEEMEKVGCVPDLVTYNILIDGVGKMGM 928

Query: 213 VDEARGLLQQMKAKGFVPD 231
           VDEA    ++MK KG VPD
Sbjct: 929 VDEAESYFKRMKEKGIVPD 947



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 75/159 (47%), Gaps = 8/159 (5%)

Query: 76   EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
            E+F +M+      N V    +   L+K G  + A +L  +++  G +PD+V +  +I+  
Sbjct: 864  ELFEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGV 923

Query: 133  ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               G   EA   F RM   G+ P+  T+  LI+ L     G    L +A +    M  +G
Sbjct: 924  GKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESL-----GKVDKLLEACELFDSMEEEG 978

Query: 193  MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              P+  TY  + +   RA KV EA  +  +MK KG +PD
Sbjct: 979  YNPSVVTYNVLIDILGRAGKVHEAAMIFHEMKVKGCMPD 1017



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 69/139 (49%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K G   EA+ L  +++ +G  P VV +++++ ++    Q +E+L +F  M+  G
Sbjct: 569 LVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKG 628

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
              +  TY+++I  L  + D     +  A      M  +GM P  G Y  +  + V+ +K
Sbjct: 629 CVADVSTYSLVINCLCKSDD-----VDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEK 683

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +D A  +  +++    VPD
Sbjct: 684 IDFALQIFNELQESSLVPD 702



 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 78/173 (45%), Gaps = 9/173 (5%)

Query: 76  EIFHKMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           EIF++M++ G    TN    + + L K G  H A+ +F ++      PD       + ++
Sbjct: 238 EIFNQMKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQFRIQPDAQTFRIFVHSF 297

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             +G+   A      M+ SG+ P  +T+ VLI  L  + +     + +A K+   M    
Sbjct: 298 NRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGN-----IDEACKFFNGMKNLR 352

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
             PN  TYT +     +A +++EA  +  +MK     PD  A    LID  G+
Sbjct: 353 CSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYN-TLIDGLGK 404



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 80/173 (46%), Gaps = 9/173 (5%)

Query: 76  EIFHKMRTEG---LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F +M+ EG   L  N   +  +L KD     ALQ+F ++++   +PD   +  ++   
Sbjct: 654 DVFGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGL 713

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             + +  EA ++   M    + P+ +TY  L+ GL     G +  L +A     +M  +G
Sbjct: 714 VKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGL-----GKSGRLEEAFNMFTKMTEEG 768

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
             P+   YT++ +   +  K+  A  + + M  K  VPD      +LID  G+
Sbjct: 769 HEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPD-VVTYSSLIDSLGK 820



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 61/138 (44%), Gaps = 5/138 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +  A   +G   EA++L   +K    +P VV +T +++    AG+  EA+ +   M   G
Sbjct: 534 LMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSLLREMEKQG 593

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  TY+ L+               ++     EMV KG   +  TY+ V     ++  
Sbjct: 594 CEPSVVTYSSLMASFYKRDQEE-----ESLSLFDEMVRKGCVADVSTYSLVINCLCKSDD 648

Query: 213 VDEARGLLQQMKAKGFVP 230
           VD+A  +  +MK +G  P
Sbjct: 649 VDQALDVFGRMKEEGMEP 666



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 67/164 (40%), Gaps = 26/164 (15%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M+  GL  N      M   L K G   EA QLF  +K++G +PDV  +  +I+   
Sbjct: 414 LFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNTLIDVLG 473

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             GQ  + L +   M+  G         ++ +   A  +G  +      +Y         
Sbjct: 474 KGGQMDKVLAIIKEMVEKG------GECIISRDSNAGHEGTIEGADRTVEY--------- 518

Query: 194 RPNAG-------TYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
            P+ G       TY  +  AF+    VDEA  LL+ MK    +P
Sbjct: 519 -PSLGFKSLGEITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIP 561



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 62/144 (43%), Gaps = 18/144 (12%)

Query: 81  MRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140
           +RT G TNN                AL++F Q+K  G  P    +  V+E     G    
Sbjct: 224 LRTFGSTNNV-------------SGALEIFNQMKSFGCNPSTNMYNFVLELLVKGGFYHS 270

Query: 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTY 200
           A+ VF ++    + P+A T+ + +     +       L  A + + EM+  G+ P   T+
Sbjct: 271 AVIVFGKLGQFRIQPDAQTFRIFVHSFNRSGR-----LDPAAEPIQEMIKSGIDPGVHTF 325

Query: 201 TAVFEAFVRAQKVDEARGLLQQMK 224
           T + +A V++  +DEA      MK
Sbjct: 326 TVLIDALVKSGNIDEACKFFNGMK 349



 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/98 (24%), Positives = 50/98 (51%), Gaps = 3/98 (3%)

Query: 75   QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            +  F +M+ +G+  + +    + ++L K     EA +LF  ++++G+ P VV +  +I+ 
Sbjct: 933  ESYFKRMKEKGIVPDVITFTSLIESLGKVDKLLEACELFDSMEEEGYNPSVVTYNVLIDI 992

Query: 132  YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169
               AG+  EA  +F  M   G  P+  T  ++ + L+ 
Sbjct: 993  LGRAGKVHEAAMIFHEMKVKGCMPDGITIGIMKRILSV 1030


>gi|356540307|ref|XP_003538631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Glycine max]
          Length = 804

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 86/176 (48%), Gaps = 9/176 (5%)

Query: 73  NLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           N+  +   MR+ G+  +      +     +  L  EA+ LF Q+K +G  PD V + A++
Sbjct: 247 NVTALVEAMRSRGVAPDLYTYNTLISCCRRGSLYEEAVHLFQQMKLEGFTPDKVTYNALL 306

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
           + +  + + +EA++V   M A+G +P + TY  LI   A        +L +A     +MV
Sbjct: 307 DVFGKSRRPQEAMKVLQEMEANGFSPTSVTYNSLISAYAKGG-----LLEEALDLKTQMV 361

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
            KG++P+  TYT +   F +A K D A  +  +M+A G  P+      ALI   G 
Sbjct: 362 HKGIKPDVFTYTTLLSGFEKAGKDDFAIQVFLEMRAVGCKPN-ICTFNALIKMHGN 416



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 82/180 (45%), Gaps = 15/180 (8%)

Query: 77  IFHKMRTEGLTNNAVK------MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           +FH +RT     N         +   L K G    A  L   +++ G   DV A+T +I 
Sbjct: 142 VFHWVRTNNSNTNLFSSSAIPVIIKILGKAGRVSSAASLLLALQNDGVHIDVYAYTCLIN 201

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK--GLAAAADGNAKILGDAQKYLMEM 188
           AY+S+G+ ++A+ +F +M   G  P   TY V++   G       N   L +A      M
Sbjct: 202 AYSSSGRYRDAVNLFNKMQQDGCNPTLITYNVVLNVYGKMGMPWSNVTALVEA------M 255

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFR 248
             +G+ P+  TY  +     R    +EA  L QQMK +GF PD K    AL+D  G+  R
Sbjct: 256 RSRGVAPDLYTYNTLISCCRRGSLYEEAVHLFQQMKLEGFTPD-KVTYNALLDVFGKSRR 314



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 8/164 (4%)

Query: 71  PRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P+   ++  +M   G +  +V    +  A +K GL  EAL L  Q+  KG  PDV  +T 
Sbjct: 315 PQEAMKVLQEMEANGFSPTSVTYNSLISAYAKGGLLEEALDLKTQMVHKGIKPDVFTYTT 374

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           ++  +  AG+   A++VF+ M A G  PN  T+  LIK       GN     +  K   +
Sbjct: 375 LLSGFEKAGKDDFAIQVFLEMRAVGCKPNICTFNALIK-----MHGNRGKFAEMMKVFDD 429

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +      P+  T+  +   F +     +  G+ ++MK  GFV +
Sbjct: 430 IKLCNCSPDIVTWNTLLAVFGQNGMDSQVSGIFKEMKRAGFVAE 473



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 59/116 (50%), Gaps = 5/116 (4%)

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
           ++  ++ +KG  PD +++  VI AY   G+ KEA R+F  M  S + P+  TY   I   
Sbjct: 670 EILREVLEKGMKPDRISYNTVIYAYCRNGRMKEASRIFSEMKDSALVPDVVTYNTFIATY 729

Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           AA +     +  +A   +  M+ +G +P+  TY ++ + + +  +  EA   ++ +
Sbjct: 730 AADS-----MFAEAIDVVRYMIKQGCKPDQNTYNSIVDWYCKLDQRHEANSFVKNL 780



 Score = 53.5 bits (127), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 62/134 (46%), Gaps = 5/134 (3%)

Query: 98  SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA 157
           SK  L  E  + F +++ +G  PD+    A++  Y       +A  +   M  +   P+ 
Sbjct: 590 SKSDLLIETERAFLELRRRGISPDITTLNAMLSIYGRKQMVAKAHEILNFMHETRFTPSL 649

Query: 158 YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
            TY  L+   + + +        +++ L E++ KGM+P+  +Y  V  A+ R  ++ EA 
Sbjct: 650 TTYNSLMYMYSRSEN-----FQKSEEILREVLEKGMKPDRISYNTVIYAYCRNGRMKEAS 704

Query: 218 GLLQQMKAKGFVPD 231
            +  +MK    VPD
Sbjct: 705 RIFSEMKDSALVPD 718



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/131 (20%), Positives = 62/131 (47%), Gaps = 5/131 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +     ++G+  +   +F ++K  G + +      +I AY+  G   +A+ V+  ML +G
Sbjct: 445 LLAVFGQNGMDSQVSGIFKEMKRAGFVAERDTFNTLISAYSRCGSFDQAMAVYKSMLEAG 504

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V P+  TY  ++  LA        +   ++K L EM     +PN  +Y+++  A+   ++
Sbjct: 505 VVPDLSTYNAVLAALARGG-----LWEQSEKVLAEMEDGRCKPNELSYSSLLHAYANGKE 559

Query: 213 VDEARGLLQQM 223
           ++      +++
Sbjct: 560 IERMNAFAEEI 570



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 3/92 (3%)

Query: 74  LQEIFHK-MRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           L+E+  K M+ + ++ N V    A  ++G   EA ++F+++KD   +PDVV +   I  Y
Sbjct: 672 LREVLEKGMKPDRISYNTV--IYAYCRNGRMKEASRIFSEMKDSALVPDVVTYNTFIATY 729

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           A+     EA+ V   M+  G  P+  TY  ++
Sbjct: 730 AADSMFAEAIDVVRYMIKQGCKPDQNTYNSIV 761



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 78/188 (41%), Gaps = 35/188 (18%)

Query: 77  IFHKMRTEGLT---NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           IF +M+  G     +    +  A S+ G   +A+ ++  + + G +PD+  + AV+ A A
Sbjct: 461 IFKEMKRAGFVAERDTFNTLISAYSRCGSFDQAMAVYKSMLEAGVVPDLSTYNAVLAALA 520

Query: 134 SAGQGKEALRVFMRMLASGVAPN---------AY----------------------TYAV 162
             G  +++ +V   M      PN         AY                      T+AV
Sbjct: 521 RGGLWEQSEKVLAEMEDGRCKPNELSYSSLLHAYANGKEIERMNAFAEEIYSGSVETHAV 580

Query: 163 LIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
           L+K L    +  + +L + ++  +E+  +G+ P+  T  A+   + R Q V +A  +L  
Sbjct: 581 LLKTL-VLVNSKSDLLIETERAFLELRRRGISPDITTLNAMLSIYGRKQMVAKAHEILNF 639

Query: 223 MKAKGFVP 230
           M    F P
Sbjct: 640 MHETRFTP 647



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 67/168 (39%), Gaps = 10/168 (5%)

Query: 76  EIFHKMRTEGLTNNAVKMFDALSK----DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           ++F +MR  G   N +  F+AL K     G   E +++F  IK     PD+V    ++  
Sbjct: 390 QVFLEMRAVGCKPN-ICTFNALIKMHGNRGKFAEMMKVFDDIKLCNCSPDIVTWNTLLAV 448

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +   G   +   +F  M  +G      T+  LI   +            A      M+  
Sbjct: 449 FGQNGMDSQVSGIFKEMKRAGFVAERDTFNTLISAYSRCGS-----FDQAMAVYKSMLEA 503

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
           G+ P+  TY AV  A  R    +++  +L +M+     P+E +    L
Sbjct: 504 GVVPDLSTYNAVLAALARGGLWEQSEKVLAEMEDGRCKPNELSYSSLL 551


>gi|255660870|gb|ACU25604.1| pentatricopeptide repeat-containing protein [Verbena halei]
          Length = 476

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 12/168 (7%)

Query: 78  FHKMRTEGL-----TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           F+KM +EG+     T N   M       G    A++ F  +K +   PDVV +  +I  Y
Sbjct: 130 FNKMLSEGIEPTRHTFNV--MIWGFFLSGKVETAIRFFEDMKSREISPDVVTYNTMINGY 187

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               + +EA + F+ M    + P   TY  LIKG  +        + DA + + EM G G
Sbjct: 188 YRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQ-----VDDALRLVEEMKGFG 242

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
            +PNA TY+ +      A+K+ EAR +L++M  K   P + ++   LI
Sbjct: 243 TKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLI 290



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 79/171 (46%), Gaps = 30/171 (17%)

Query: 91  VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           V M D+  K+G+  E++++F ++++ G    + ++ A+ +     G+     R F +ML+
Sbjct: 76  VMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMGKRYFNKMLS 135

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKI------------------------------LGD 180
            G+ P  +T+ V+I G   +      I                              + +
Sbjct: 136 EGIEPTRHTFNVMIWGFFLSGKVETAIRFFEDMKSREISPDVVTYNTMINGYYRVKKMEE 195

Query: 181 AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           A+KY +EM G+ + P   TYT + + +V   +VD+A  L+++MK  G  P+
Sbjct: 196 AEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGTKPN 246



 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 6/120 (5%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA + F ++K +   P VV +T +I+ Y S  Q  +ALR+   M   G  PNA TY+ L+
Sbjct: 195 EAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGTKPNAITYSTLL 254

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQKVDEARGLLQQM 223
            GL      NA+ + +A+  L EM+ K + P +   +  +  +  ++  +D A  +L+ M
Sbjct: 255 PGLC-----NAEKMSEARVILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKAM 309


>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Cucumis sativus]
          Length = 749

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 78/160 (48%), Gaps = 8/160 (5%)

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E   +MR  GL  N      + D  S+ G   +A Q+  ++ + G  P ++ + A+I  +
Sbjct: 364 EFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGH 423

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+ ++A  +   M+  G  P+  +Y+ +I G     +     L  A +  +EMV KG
Sbjct: 424 CILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQE-----LEKAFQLKVEMVAKG 478

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           + P+  TY+++ +   + +++ E   L Q+M + G  PDE
Sbjct: 479 ISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDE 518



 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/144 (34%), Positives = 76/144 (52%), Gaps = 10/144 (6%)

Query: 93  MFDALSKD----GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQG-KEALRVFMR 147
           +FD + K      L ++AL +    K  G MP V+++ A+++A     Q  K A  +F  
Sbjct: 134 VFDLVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKE 193

Query: 148 MLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAF 207
           M+ SGV+PN YTY +LI+G   A  GN ++      +  EM   G  PN  TY  + +A+
Sbjct: 194 MVESGVSPNVYTYNILIRGFCTA--GNLEM---GLFFFGEMERNGCLPNVVTYNTIIDAY 248

Query: 208 VRAQKVDEARGLLQQMKAKGFVPD 231
            + +K+ EA  LL+ M  KG  P+
Sbjct: 249 CKLRKIGEAFKLLRLMALKGLNPN 272



 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 81/158 (51%), Gaps = 14/158 (8%)

Query: 80  KMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           +M   GL+ N V    + +++ K G  + A++   Q++D+G  P+   +T +I+ ++  G
Sbjct: 333 EMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQG 392

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG---DAQKYLMEMVGKGM 193
             K+A ++   M+ +G  P   TY  LI G          ILG   DA   L EM+ +G 
Sbjct: 393 FLKQAYQIMKEMVENGFTPTIITYNALINGHC--------ILGRMEDASGLLQEMIERGF 444

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            P+  +Y+ +   F R Q++++A  L  +M AKG  PD
Sbjct: 445 IPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPD 482



 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 82/165 (49%), Gaps = 11/165 (6%)

Query: 72  RNLQEIFHKMRT---EGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAH 125
           R + E F  +R    +GL  N +    + + L ++G   E  ++  ++  + ++PD V  
Sbjct: 252 RKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTF 311

Query: 126 TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185
             +I  Y + G   +AL +   M+ +G++PN  TY  LI  +  A +     L  A ++L
Sbjct: 312 NTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGN-----LNRAMEFL 366

Query: 186 MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
            +M  +G+ PN  TYT + + F +   + +A  ++++M   GF P
Sbjct: 367 DQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTP 411



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 73/131 (55%), Gaps = 5/131 (3%)

Query: 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
           G   +A  L  ++ ++G +PDVV+++ +I  +    + ++A ++ + M+A G++P+  TY
Sbjct: 427 GRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATY 486

Query: 161 AVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
           + LI+GL        + LG+      EM+  G+ P+  TYT++  A+     +D+A  L 
Sbjct: 487 SSLIQGLCK-----QRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLH 541

Query: 221 QQMKAKGFVPD 231
            +M  KGF PD
Sbjct: 542 DEMIQKGFSPD 552



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 73/173 (42%), Gaps = 8/173 (4%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F +M   G   N V    + DA  K     EA +L   +  KG  P+++++  VI     
Sbjct: 226 FGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCR 285

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            GQ KE   +   M      P+  T+  LI G     + +  ++  A     EMV  G+ 
Sbjct: 286 EGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHA-----EMVKNGLS 340

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGF 247
           PN  TYT +  +  +A  ++ A   L QM+ +G  P+ +     +     QGF
Sbjct: 341 PNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGF 393



 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 69/150 (46%), Gaps = 6/150 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L K     E   LF ++   G  PD V +T++I AY   G   +ALR+   M+  G
Sbjct: 489 LIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKG 548

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            +P+  TY VLI G    +        +A++ L++++ +   PN  TY  + +      +
Sbjct: 549 FSPDIVTYNVLINGFNKQSRTK-----EAKRLLLKLLYEESVPNEITYNTLIDN-CNNLE 602

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDK 242
              A  L++    KG + +   V E+++ K
Sbjct: 603 FKSALALMKGFCMKGLMNEADRVLESMLQK 632



 Score = 37.4 bits (85), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 20/79 (25%), Positives = 39/79 (49%)

Query: 89  NAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRM 148
           +A+ +       GL +EA ++   +  KG+  +   +  +I  ++  G  ++A  ++  M
Sbjct: 605 SALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEM 664

Query: 149 LASGVAPNAYTYAVLIKGL 167
           L SG AP++ T   L K L
Sbjct: 665 LHSGFAPHSVTIMALAKSL 683


>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Cucumis sativus]
          Length = 749

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 82/170 (48%), Gaps = 9/170 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           QEIF +M   G+  + V    +   L+++G  ++AL  F +++  G +PD V +T +I+ 
Sbjct: 382 QEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDG 441

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +   G   +AL++   MLA G   +  TY   + GL        K+  DA     EMV +
Sbjct: 442 FCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLC-----KKKMFADADMLFNEMVER 496

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           GM P+  T+T +   + +   +D+A  L + M      PD K     LID
Sbjct: 497 GMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPD-KVTYNTLID 545



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 65/139 (46%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M +AL KD      +   + ++ KG   D+V +  +I AY   G  +EA ++     + G
Sbjct: 263 MVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRG 322

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P   TY  ++ GL      +      A+  L+EM+  G+ PNA TY  +     R   
Sbjct: 323 MEPGLLTYNAILYGLCKIGKYDR-----AKDVLIEMLQLGLTPNAATYNTLLVEICRRDN 377

Query: 213 VDEARGLLQQMKAKGFVPD 231
           + EA+ +  +M  +G +PD
Sbjct: 378 ILEAQEIFDEMSRRGVLPD 396



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 74/149 (49%), Gaps = 6/149 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +     GL  EAL L  Q+ +KG  P++V    +I+ Y  +G   +A     +M+++G
Sbjct: 578 VLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNG 637

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P++++Y  LI G    A+     L  A   + EM  +G++ N  TY  +   F    K
Sbjct: 638 IIPDSFSYNTLIDGYLKEAN-----LEKAFILINEMEKRGLQFNIITYNLILNGFCAEGK 692

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALID 241
           + EA  +L++M   G  PD  A   +LI+
Sbjct: 693 MQEAEQVLRKMIEIGINPD-GATYSSLIN 720



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/212 (23%), Positives = 101/212 (47%), Gaps = 16/212 (7%)

Query: 24  NTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKKVV-----DEEPTDPRNLQE-- 76
           NT +N   ++ + + +D    + V  +  + P +  F  ++     D       NL E  
Sbjct: 471 NTFLNGLCKKKMFADADMLFNEMV--ERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAM 528

Query: 77  IFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           +   ++ + +T N   + D   K G    A +L+  +  K  +PD +++  V+  + S+G
Sbjct: 529 VRTNLKPDKVTYNT--LIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSG 586

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196
              EAL +  +ML  G+ PN  T   LIKG   + D     +  A +YL +M+  G+ P+
Sbjct: 587 LLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGD-----MPKAYEYLSKMISNGIIPD 641

Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
           + +Y  + + +++   +++A  L+ +M+ +G 
Sbjct: 642 SFSYNTLIDGYLKEANLEKAFILINEMEKRGL 673



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 71/160 (44%), Gaps = 14/160 (8%)

Query: 80  KMRTEGLTNNAV-------KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           KMR E L               + L K  +  +A  LF ++ ++G +PD    T +I  Y
Sbjct: 453 KMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGY 512

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD-GNAKILGDAQKYLMEMVGK 191
              G   +AL +F  M+ + + P+  TY  LI G   A + G AK L D      +M+ K
Sbjct: 513 CKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWD------DMIRK 566

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            + P+  +Y  V   F  +  + EA  L  QM  KG  P+
Sbjct: 567 DIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPN 606



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 75/161 (46%), Gaps = 10/161 (6%)

Query: 75  QEIFHKMRTEGLTNNAVK----MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           +++  +M   GLT NA      + +   +D +  EA ++F ++  +G +PD+V+ +++I 
Sbjct: 347 KDVLIEMLQLGLTPNAATYNTLLVEICRRDNIL-EAQEIFDEMSRRGVLPDLVSFSSLIG 405

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
             A  G   +AL  F  M  SG+ P+   Y +LI G           L DA K   EM+ 
Sbjct: 406 VLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNG-----ALSDALKMRDEMLA 460

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +G   +  TY        + +   +A  L  +M  +G VPD
Sbjct: 461 RGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPD 501



 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 38/173 (21%), Positives = 70/173 (40%), Gaps = 8/173 (4%)

Query: 72  RNLQEIFHKMRTEGLT---NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R   E F  +R +G++   N   K+   L + G    A +++ ++   G   +V     +
Sbjct: 204 REGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIM 263

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           + A     + +  +     M   GV  +  TY  LI   A   +G   ++ +A + L   
Sbjct: 264 VNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLIN--AYCREG---LVEEAFQLLNSF 318

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
             +GM P   TY A+     +  K D A+ +L +M   G  P+       L++
Sbjct: 319 SSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVE 371


>gi|449435202|ref|XP_004135384.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 717

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/152 (30%), Positives = 75/152 (49%), Gaps = 5/152 (3%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
           AL + G   EA  L   +   G +PD V +T++I  +   G  ++A  VF  ML+ GVAP
Sbjct: 504 ALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAP 563

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY VLI   AA      ++L  A  Y  +M+ K +  N  TY A+       +++DE
Sbjct: 564 SVVTYTVLIHAHAA-----KQMLDLAFMYFSKMLEKSVPANVITYNAIINGLCMTRRMDE 618

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALIDKRGQGF 247
           A     +M+ KG +P++ +    + +    G+
Sbjct: 619 AYKYFDEMEEKGILPNKFSYTILINESCNMGY 650



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 70/150 (46%), Gaps = 8/150 (5%)

Query: 77  IFHKMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F KM   GL     N  ++   L  + L  +A  ++  ++  G  P VV +  ++++Y 
Sbjct: 167 VFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYC 226

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G+  +AL +   M   G  PN  TY VL+ GL+   +     L  A+  + EM+  G+
Sbjct: 227 KEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGE-----LEQAKGLIEEMLNSGL 281

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
             +A TY  +   F +     EA  L+++M
Sbjct: 282 NVSAYTYNPLINGFCQKGLFVEAFDLVEEM 311



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M D+  K+G   +AL+L ++++++G  P+ V +  ++   +  G+ ++A  +   ML SG
Sbjct: 221 MLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSG 280

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +  +AYTY  LI G          +  +A   + EMV +   P   TY  +     +  +
Sbjct: 281 LNVSAYTYNPLINGFCQKG-----LFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQ 335

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V   R     M    F PD
Sbjct: 336 VTGVRLRFSDMLKSKFTPD 354



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 68/165 (41%), Gaps = 30/165 (18%)

Query: 98  SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA 157
            + G   EA  LF ++K +  +P V+ +  +I      G    ALR+   M   G+ P+ 
Sbjct: 366 CRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDI 425

Query: 158 YTYAVLIKGL-----AAAADG-----------------NAKILGDAQ------KYLM--E 187
           +TY +L+ G       + A G                 N +I+G+ +       + M  E
Sbjct: 426 FTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEE 485

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           M+  G  P+  TY     A  +    +EA  LL+ M + G +PD 
Sbjct: 486 MLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDH 530



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 5/131 (3%)

Query: 110 FAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169
           F+ +      PD+V+  +++  Y   G   EA  +F  +    + P   TY  LI GL  
Sbjct: 343 FSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCM 402

Query: 170 AADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFV 229
                   L  A +   EM  +G+ P+  TYT +     +   V  ARG   +M +KG  
Sbjct: 403 WG-----YLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLK 457

Query: 230 PDEKAVKEALI 240
           PD  A    ++
Sbjct: 458 PDRFAYNTRIV 468



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 5/138 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +   K G    A   F ++  KG  PD  A+   I           A  +   MLA+G
Sbjct: 431 LVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAG 490

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  TY V +  L     GN +   +A   L  MV  G+ P+  TYT++   FV+   
Sbjct: 491 FPPDVITYNVFVHAL--CQQGNFE---EACDLLENMVSDGLIPDHVTYTSIINGFVKNGH 545

Query: 213 VDEARGLLQQMKAKGFVP 230
           + +AR +  +M +KG  P
Sbjct: 546 LRKAREVFNEMLSKGVAP 563



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 48/82 (58%), Gaps = 2/82 (2%)

Query: 86  LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVF 145
           +T NA+   + L       EA + F ++++KG +P+  ++T +I    + G  +EALR++
Sbjct: 601 ITYNAI--INGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMGYWEEALRLY 658

Query: 146 MRMLASGVAPNAYTYAVLIKGL 167
             ML   + P+++T++V +K L
Sbjct: 659 REMLDRKIQPDSFTHSVFLKNL 680



 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 31/145 (21%), Positives = 68/145 (46%), Gaps = 8/145 (5%)

Query: 72  RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R  +E+F++M ++G+  + V    +  A +   +   A   F+++ +K    +V+ + A+
Sbjct: 547 RKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAI 606

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I       +  EA + F  M   G+ PN ++Y +LI         N     +A +   EM
Sbjct: 607 INGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILIN-----ESCNMGYWEEALRLYREM 661

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKV 213
           + + ++P++ T++   +   R  +V
Sbjct: 662 LDRKIQPDSFTHSVFLKNLHRDYQV 686



 Score = 40.8 bits (94), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 5/122 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
            L +F ++   G +PDV     ++          +A  V+  M   G+ P   TY  ++ 
Sbjct: 164 CLLVFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLD 223

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
             +   +G       A + L EM  +G  PN  TY  +     +  ++++A+GL+++M  
Sbjct: 224 --SYCKEGRVD---QALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLN 278

Query: 226 KG 227
            G
Sbjct: 279 SG 280



 Score = 40.0 bits (92), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 22/92 (23%), Positives = 47/92 (51%), Gaps = 5/92 (5%)

Query: 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTY 200
            L VF +M+ +G+ P+      +++ L      +  +L  A+     M   G++P   TY
Sbjct: 164 CLLVFDKMIRNGLLPDVKNCNRILRVLR-----DENLLSKAKNVYGMMEQFGIKPTVVTY 218

Query: 201 TAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
             + +++ +  +VD+A  LL +M+ +G  P++
Sbjct: 219 NTMLDSYCKEGRVDQALELLSEMQERGCYPND 250


>gi|302762967|ref|XP_002964905.1| hypothetical protein SELMODRAFT_167316 [Selaginella moellendorffii]
 gi|300167138|gb|EFJ33743.1| hypothetical protein SELMODRAFT_167316 [Selaginella moellendorffii]
          Length = 773

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 89/183 (48%), Gaps = 9/183 (4%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEAL-QLFAQIKDKGHMPDVVAHTAVIEAY 132
           +  +M+ E +  N +    + +A SK GL  E L  LFAQ++ +G  PD++ +  ++ A 
Sbjct: 139 LLARMKKEQVEPNLITYNTVLNACSKGGLDWEGLLNLFAQMRHEGIQPDLITYNTLLSAC 198

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           +S G  ++A  VF  M  SGV  +A TY  L+   A +       LG  ++ L EM  +G
Sbjct: 199 SSRGLVEQAAMVFKTMNESGVVADAVTYKSLVDTFAGSNQ-----LGRVEELLREMEDEG 253

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVIN 252
             P+   Y ++ EA+  A  V  A G+ +QM+  G  PD +     L     QG    + 
Sbjct: 254 NPPDIAGYNSLIEAYADAGNVHGAAGVFKQMQRGGCAPDVETYSTLLRIYGNQGCFEQVR 313

Query: 253 ILF 255
            LF
Sbjct: 314 SLF 316



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 9/173 (5%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F  M   G+  +AV    + D  +         +L  +++D+G+ PD+  + ++IEAYA
Sbjct: 210 VFKTMNESGVVADAVTYKSLVDTFAGSNQLGRVEELLREMEDEGNPPDIAGYNSLIEAYA 269

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG    A  VF +M   G AP+  TY+ L++       GN       +    +M     
Sbjct: 270 DAGNVHGAAGVFKQMQRGGCAPDVETYSTLLR-----IYGNQGCFEQVRSLFSDMKDLST 324

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
            P   TY ++ + F       E+  L   M   G  PD+ A   AL+   G+G
Sbjct: 325 PPTVATYNSLIQVFGEGGYFQESINLFHDMVDSGVKPDD-ATYSALLSVCGRG 376



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 67/149 (44%), Gaps = 5/149 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M   + ++GL  +  ++F  + +     +V A TA+I AY   GQ + +L +  RM    
Sbjct: 88  MIGIMGREGLLEKCSEIFEDMPENDVKWNVYAFTALINAYGRNGQYEASLHLLARMKKEQ 147

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V PN  TY  +   L A + G     G       +M  +G++P+  TY  +  A      
Sbjct: 148 VEPNLITYNTV---LNACSKGGLDWEG-LLNLFAQMRHEGIQPDLITYNTLLSACSSRGL 203

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALID 241
           V++A  + + M   G V D    K +L+D
Sbjct: 204 VEQAAMVFKTMNESGVVADAVTYK-SLVD 231



 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 66/161 (40%), Gaps = 9/161 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +FH M   G+  +      +     + GLT EA ++   +      P + A   +I +Y 
Sbjct: 350 LFHDMVDSGVKPDDATYSALLSVCGRGGLTREAAKIHQHMLTNESTPSLEASAGLISSYG 409

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
                K+AL  + R+  +G+ P    Y  LI+G A        +  +A   L  M   G 
Sbjct: 410 KMAMYKDALVSYYRIREAGLDPQVSAYDALIQGYAKGG-----LYVEAGSTLYAMNKAGF 464

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK-GFVPDEK 233
           +    +  +V EA+ +    DEA     +++ K G   DE+
Sbjct: 465 QAPVSSVNSVMEAYSKVGLHDEALEFFSELQQKEGSEVDER 505



 Score = 43.9 bits (102), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 59/141 (41%), Gaps = 8/141 (5%)

Query: 88  NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMR 147
           N+ +++F    + G   E++ LF  + D G  PD   ++A++      G  +EA ++   
Sbjct: 332 NSLIQVF---GEGGYFQESINLFHDMVDSGVKPDDATYSALLSVCGRGGLTREAAKIHQH 388

Query: 148 MLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAF 207
           ML +   P+    A LI     ++ G   +  DA      +   G+ P    Y A+ + +
Sbjct: 389 MLTNESTPSLEASAGLI-----SSYGKMAMYKDALVSYYRIREAGLDPQVSAYDALIQGY 443

Query: 208 VRAQKVDEARGLLQQMKAKGF 228
            +     EA   L  M   GF
Sbjct: 444 AKGGLYVEAGSTLYAMNKAGF 464


>gi|356551942|ref|XP_003544331.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 545

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 72/159 (45%), Gaps = 5/159 (3%)

Query: 73  NLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           NL E  H+      T     + D L K G       LF ++ D+G  PDV+ +  +I+A 
Sbjct: 359 NLFEEIHQKNMVPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDAL 418

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G    A+ +F +M    + PN YT+ +L+ GL          L +A ++  +++ KG
Sbjct: 419 CKNGHLDRAIALFNKMKDQAIRPNVYTFTILLDGLCKVGR-----LKNALEFFQDLLTKG 473

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              N  TYT +     +   +DEA  L  +M+  G + D
Sbjct: 474 YCLNVRTYTVMINGLCKEGLLDEALALQSRMEDNGCISD 512



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 75/179 (41%), Gaps = 31/179 (17%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L KD L  EA  L+ ++  KG  PDVV ++ ++  +   GQ   A+ +   M+   
Sbjct: 204 IIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLEN 263

Query: 153 VAPNAYTYAVLIKGLA----------------------------AAADGNAKI--LGDAQ 182
           + P+ YTY +L+  L                                DG   +  + +A+
Sbjct: 264 INPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMDGYCLVNEVNNAK 323

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           +    M   G+ P+   Y+ +     + ++VDEA  L +++  K  VPD      +LID
Sbjct: 324 RVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVPD-TVTYTSLID 381



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 78/181 (43%), Gaps = 16/181 (8%)

Query: 73  NLQEIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           N + +F+ M   G+T +      M + L K     EAL LF +I  K  +PD V +T++I
Sbjct: 321 NAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLI 380

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
           +    +G+      +F  ML  G  P+  TY  LI  L          L  A     +M 
Sbjct: 381 DCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGH-----LDRAIALFNKMK 435

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA--------VKEALID 241
            + +RPN  T+T + +   +  ++  A    Q +  KG+  + +          KE L+D
Sbjct: 436 DQAIRPNVYTFTILLDGLCKVGRLKNALEFFQDLLTKGYCLNVRTYTVMINGLCKEGLLD 495

Query: 242 K 242
           +
Sbjct: 496 E 496



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 66/138 (47%), Gaps = 5/138 (3%)

Query: 92  KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
            + DAL K+G    A+ LF ++KD+   P+V   T +++     G+ K AL  F  +L  
Sbjct: 413 NLIDALCKNGHLDRAIALFNKMKDQAIRPNVYTFTILLDGLCKVGRLKNALEFFQDLLTK 472

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           G   N  TY V+I GL         +L +A      M   G   +A T+  +  AF    
Sbjct: 473 GYCLNVRTYTVMINGLCKEG-----LLDEALALQSRMEDNGCISDAVTFEIMIRAFFDKD 527

Query: 212 KVDEARGLLQQMKAKGFV 229
           + D+A  L+++M A+G +
Sbjct: 528 ENDKAEKLVREMIARGLL 545



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 66/139 (47%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DAL K+G   EA  + A +       DVV ++ +++ Y    +   A RVF  M   G
Sbjct: 274 LVDALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKRVFYTMTQMG 333

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V P+ + Y+++I GL        K + +A     E+  K M P+  TYT++ +   ++ +
Sbjct: 334 VTPDVHCYSIMINGLC-----KIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLCKSGR 388

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +     L  +M  +G  PD
Sbjct: 389 ISYVWDLFDEMLDRGQPPD 407



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 71/149 (47%), Gaps = 6/149 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + + K G T  A++L  +I+     P+VV ++ +I+         EA  ++  M+  G
Sbjct: 169 LINGVCKIGETRAAIRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKG 228

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           ++P+  TY++L+ G       N  I       L EMV + + P+  TYT + +A  +  K
Sbjct: 229 ISPDVVTYSILVSGFCIVGQLNRAI-----DLLNEMVLENINPDIYTYTILVDALCKEGK 283

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALID 241
           V EA  +L  M  K  V  +  V   L+D
Sbjct: 284 VKEAENVLAVM-VKACVNLDVVVYSTLMD 311



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 5/121 (4%)

Query: 111 AQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAA 170
           ++I   G+ P+ +    +++     G+ KEALR   ++LA G   +  +Y +LI G+   
Sbjct: 117 SKILKLGYQPNTITLNTLMKGLCLEGKVKEALRFHDKVLAQGFRLSGISYGILINGVCKI 176

Query: 171 ADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
            +  A I     + L  +    +RPN   Y+ + +   +   VDEA  L  +M  KG  P
Sbjct: 177 GETRAAI-----RLLRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISP 231

Query: 231 D 231
           D
Sbjct: 232 D 232



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 64/139 (46%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L  +G   EAL+   ++  +G     +++  +I      G+ + A+R+  R+    
Sbjct: 134 LMKGLCLEGKVKEALRFHDKVLAQGFRLSGISYGILINGVCKIGETRAAIRLLRRIERWS 193

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN   Y+++I  L         ++ +A     EMVGKG+ P+  TY+ +   F    +
Sbjct: 194 IRPNVVIYSMIIDRLCKDT-----LVDEAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQ 248

Query: 213 VDEARGLLQQMKAKGFVPD 231
           ++ A  LL +M  +   PD
Sbjct: 249 LNRAIDLLNEMVLENINPD 267



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 8/120 (6%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F+KM+ + +  N      + D L K G    AL+ F  +  KG+  +V  +T +I    
Sbjct: 430 LFNKMKDQAIRPNVYTFTILLDGLCKVGRLKNALEFFQDLLTKGYCLNVRTYTVMINGLC 489

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G   EAL +  RM  +G   +A T+ ++I+      D N K    A+K + EM+ +G+
Sbjct: 490 KEGLLDEALALQSRMEDNGCISDAVTFEIMIRAF-FDKDENDK----AEKLVREMIARGL 544


>gi|357485117|ref|XP_003612846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514181|gb|AES95804.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 892

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 84/167 (50%), Gaps = 8/167 (4%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F +M+  G+  +      + D   + G   +A ++F ++++ G +P++ +++ +I+ +
Sbjct: 301 EVFKEMKNSGILPDVYSYSILIDGFCRKGRVDQASEVFKEMRNSGILPNIYSYSILIDGF 360

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+  +AL VF  M  SG+ P+ Y+Y++LI G     D ++ I     K+  EM    
Sbjct: 361 CKEGRVDKALEVFEEMKNSGILPDVYSYSILIDGFCRKGDMDSAI-----KFWEEMTSNN 415

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
             P+A  Y ++ + + ++++   A    + M+  G  PD  A    L
Sbjct: 416 FSPSAFNYCSLIKGYYKSKQFANALKEFRIMQKLGMWPDTIACNHIL 462



 Score = 76.6 bits (187), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 38/135 (28%), Positives = 70/135 (51%), Gaps = 5/135 (3%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L + G+  EA ++F ++K+ G +PDV +++ +I+ +   G+  +A  VF  M  SG+ P
Sbjct: 289 GLCQGGILDEASEVFKEMKNSGILPDVYSYSILIDGFCRKGRVDQASEVFKEMRNSGILP 348

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           N Y+Y++LI G           +  A +   EM   G+ P+  +Y+ + + F R   +D 
Sbjct: 349 NIYSYSILIDGFCKEGR-----VDKALEVFEEMKNSGILPDVYSYSILIDGFCRKGDMDS 403

Query: 216 ARGLLQQMKAKGFVP 230
           A    ++M +  F P
Sbjct: 404 AIKFWEEMTSNNFSP 418



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/165 (29%), Positives = 72/165 (43%), Gaps = 8/165 (4%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D R   EI  K+   G T N V        L K GL   A +L   +  K    +     
Sbjct: 225 DIRRASEILGKIYMSGETPNVVTYGTYIKGLCKVGLFGVAWRLIQNLCRKNQPLNNHCFN 284

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
           AVI      G   EA  VF  M  SG+ P+ Y+Y++LI G           +  A +   
Sbjct: 285 AVIYGLCQGGILDEASEVFKEMKNSGILPDVYSYSILIDGFCRKGR-----VDQASEVFK 339

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           EM   G+ PN  +Y+ + + F +  +VD+A  + ++MK  G +PD
Sbjct: 340 EMRNSGILPNIYSYSILIDGFCKEGRVDKALEVFEEMKNSGILPD 384



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 6/129 (4%)

Query: 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
           G    A  LF ++  +G  P+VV +T  I  Y    +  +A +++ +M   GV P+   Y
Sbjct: 609 GEMTRARALFDEMSREGCSPNVVTYTCFINEYLKLNKNNQAHKLYEKMKERGVYPDQILY 668

Query: 161 AVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM-RPNAGTYTAVFEAFVRAQKVDEARGL 219
            +LI     AA  N   +  A+    EM  +G   PN   YT +  ++++  K D+A  L
Sbjct: 669 TMLI-----AAFCNTGEMNRAEALFDEMKQEGRCTPNVVMYTCLINSYIKLNKRDQAEKL 723

Query: 220 LQQMKAKGF 228
            ++M+AKG 
Sbjct: 724 YEEMRAKGL 732



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 10/155 (6%)

Query: 77  IFHKMRTEGLTNNAVKMFDALSK----DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +F KM   G+T N VK +  L      D     A +LF  +K+    PD +A+T+++  +
Sbjct: 547 LFIKMTKVGITFN-VKTYTILINLFISDCKMDVAYRLFKGMKESRVYPDQIAYTSLVAGF 605

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
            + G+   A  +F  M   G +PN  TY   I         N      A K   +M  +G
Sbjct: 606 CNTGEMTRARALFDEMSREGCSPNVVTYTCFINEYLKLNKNN-----QAHKLYEKMKERG 660

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
           + P+   YT +  AF    +++ A  L  +MK +G
Sbjct: 661 VYPDQILYTMLIAAFCNTGEMNRAEALFDEMKQEG 695



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/166 (24%), Positives = 72/166 (43%), Gaps = 30/166 (18%)

Query: 97  LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
           + +  +  +ALQL   +  +  +PDVV ++ +I  +A     ++A+ +F++M   G+  N
Sbjct: 500 ICRGSVPEKALQLLPVMLKRNVLPDVVNYSTLISCFAKRLNSEKAVMLFIKMTKVGITFN 559

Query: 157 AYTYAVLI----------------KGLA--------------AAADGNAKILGDAQKYLM 186
             TY +LI                KG+                A   N   +  A+    
Sbjct: 560 VKTYTILINLFISDCKMDVAYRLFKGMKESRVYPDQIAYTSLVAGFCNTGEMTRARALFD 619

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           EM  +G  PN  TYT     +++  K ++A  L ++MK +G  PD+
Sbjct: 620 EMSREGCSPNVVTYTCFINEYLKLNKNNQAHKLYEKMKERGVYPDQ 665



 Score = 41.6 bits (96), Expect = 0.31,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 5/131 (3%)

Query: 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
           ++AL L  + ++ G   +  ++   I         ++AL++   ML   V P+   Y+ L
Sbjct: 472 NKALALSEKFQENGVHFNPYSYNEFIHRICRGSVPEKALQLLPVMLKRNVLPDVVNYSTL 531

Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           I   A   +    ++       ++M   G+  N  TYT +   F+   K+D A  L + M
Sbjct: 532 ISCFAKRLNSEKAVM-----LFIKMTKVGITFNVKTYTILINLFISDCKMDVAYRLFKGM 586

Query: 224 KAKGFVPDEKA 234
           K     PD+ A
Sbjct: 587 KESRVYPDQIA 597


>gi|449461223|ref|XP_004148341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Cucumis sativus]
 gi|449507064|ref|XP_004162923.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Cucumis sativus]
          Length = 844

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 78/159 (49%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNN---AVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++  +MR EGL  +      +  A  ++GL +EA + F ++K  G+ P  V + A+++ +
Sbjct: 289 DLLDEMRNEGLQFDEFTCSTVISACGREGLINEAKEFFVELKSSGYEPGTVTYNALLQVF 348

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             AG   EAL +   M  +    ++ TY  L+     AA   A    +    +  M  KG
Sbjct: 349 GKAGIYSEALNILKEMEDNNCTLDSVTYNELV-----AAYVRAGFYEEGATVIDTMTRKG 403

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + PNA TYT V  A+ RA K  +A  L  QMK  G VP+
Sbjct: 404 VMPNAVTYTTVINAYGRAGKEVKALQLFNQMKKSGCVPN 442



 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 87/221 (39%), Gaps = 49/221 (22%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           I  +M     T ++V   ++  A  + G   E   +   +  KG MP+ V +T VI AY 
Sbjct: 360 ILKEMEDNNCTLDSVTYNELVAAYVRAGFYEEGATVIDTMTRKGVMPNAVTYTTVINAYG 419

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIK--GLAAAADGNAKILGDAQ--------- 182
            AG+  +AL++F +M  SG  PN  TY  ++   G  + ++   KIL D +         
Sbjct: 420 RAGKEVKALQLFNQMKKSGCVPNVCTYNSILALLGKKSRSEEMIKILSDMRINGCPPNRI 479

Query: 183 --KYLMEMVGK-----------------GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
               L+ M G                  G  P   T+  +  A+ R     +A  +  +M
Sbjct: 480 TWNTLLAMCGDKGKHKFVNHVFREMKNCGFEPGKDTFNTLISAYGRCGSELDAAKMYDEM 539

Query: 224 KAKGFVP----------------DEKAVKEALIDKRGQGFR 248
              GF P                D KA +  L+D R +GF+
Sbjct: 540 MKAGFTPCATTYNALLNALARRGDWKAAESVLLDMRNKGFK 580



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 71/153 (46%), Gaps = 8/153 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           Q++   +R  GL  + V    + +  ++ G   +A ++   +   G  PD+V++  +I+ 
Sbjct: 673 QKMLDLIRESGLQPDLVTYNSLMNMYARRGECWKAEEILKGLIKSGESPDLVSYNTIIKG 732

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +   G  +EA+RV   M   G+ P  +TY   + G A        +  +  + +  M+ K
Sbjct: 733 FCRQGLMQEAIRVMSEMTTRGICPCIFTYNTFVSGYAGRG-----MFAEVDEVISYMIQK 787

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
             +PN  TY  + + + +A+K  +A   +  +K
Sbjct: 788 NCKPNELTYKIIVDGYCKARKYQDAMDFIFGIK 820



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 84/211 (39%), Gaps = 40/211 (18%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +   M  +G+  NAV    + +A  + G   +ALQLF Q+K  G +P+V  + +++    
Sbjct: 395 VIDTMTRKGVMPNAVTYTTVINAYGRAGKEVKALQLFNQMKKSGCVPNVCTYNSILALLG 454

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD-GNAKILG------------- 179
              + +E +++   M  +G  PN  T+  L   LA   D G  K +              
Sbjct: 455 KKSRSEEMIKILSDMRINGCPPNRITWNTL---LAMCGDKGKHKFVNHVFREMKNCGFEP 511

Query: 180 -------------------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
                              DA K   EM+  G  P A TY A+  A  R      A  +L
Sbjct: 512 GKDTFNTLISAYGRCGSELDAAKMYDEMMKAGFTPCATTYNALLNALARRGDWKAAESVL 571

Query: 221 QQMKAKGFVPDEKAVKEAL-IDKRGQGFRGV 250
             M+ KGF P+E +    L    +G   RG+
Sbjct: 572 LDMRNKGFKPNETSFSLMLHCYAKGGNVRGL 602



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/190 (20%), Positives = 85/190 (44%), Gaps = 11/190 (5%)

Query: 72  RNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R ++  F ++   G   + V    M    +K+ +   A ++   I++ G  PD+V + ++
Sbjct: 635 RGMERAFEELMKNGYKPDMVIFNSMLSIFAKNNMYERAQKMLDLIRESGLQPDLVTYNSL 694

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           +  YA  G+  +A  +   ++ SG +P+  +Y  +IKG          ++ +A + + EM
Sbjct: 695 MNMYARRGECWKAEEILKGLIKSGESPDLVSYNTIIKGFCRQG-----LMQEAIRVMSEM 749

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID--KRGQG 246
             +G+ P   TY      +       E   ++  M  K   P+E   K  ++D   + + 
Sbjct: 750 TTRGICPCIFTYNTFVSGYAGRGMFAEVDEVISYMIQKNCKPNELTYK-IIVDGYCKARK 808

Query: 247 FRGVINILFG 256
           ++  ++ +FG
Sbjct: 809 YQDAMDFIFG 818



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 68/138 (49%), Gaps = 4/138 (2%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M   L ++     AL+L  +I    +  DV A T ++ AY+  G+ K+A+ +F RM   G
Sbjct: 203 MIRILGRESKYSIALKLLDKIPIDKYSLDVRACTTILHAYSRNGKYKQAIAMFERMKDCG 262

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           ++P+  TY V++           KIL      L EM  +G++ +  T + V  A  R   
Sbjct: 263 LSPSLVTYNVMLDVYGKMGRSWDKIL----DLLDEMRNEGLQFDEFTCSTVISACGREGL 318

Query: 213 VDEARGLLQQMKAKGFVP 230
           ++EA+    ++K+ G+ P
Sbjct: 319 INEAKEFFVELKSSGYEP 336



 Score = 40.8 bits (94), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 40/227 (17%), Positives = 89/227 (39%), Gaps = 22/227 (9%)

Query: 22  ITNTRVNA------TLQRSLSSSSDQPTKKYVN------TKSKLPPPYDPFKKVVDEEPT 69
           +++ R+N       T    L+   D+   K+VN            P  D F  ++     
Sbjct: 466 LSDMRINGCPPNRITWNTLLAMCGDKGKHKFVNHVFREMKNCGFEPGKDTFNTLISAYGR 525

Query: 70  DPRNLQ--EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVA 124
               L   +++ +M   G T  A     + +AL++ G    A  +   +++KG  P+  +
Sbjct: 526 CGSELDAAKMYDEMMKAGFTPCATTYNALLNALARRGDWKAAESVLLDMRNKGFKPNETS 585

Query: 125 HTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKY 184
            + ++  YA  G  +   R+   +    + P+      LI      A+   + +   ++ 
Sbjct: 586 FSLMLHCYAKGGNVRGLERIGKDIYDGQIFPSWVLLRTLI-----LANFKCRAVRGMERA 640

Query: 185 LMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             E++  G +P+   + ++   F +    + A+ +L  ++  G  PD
Sbjct: 641 FEELMKNGYKPDMVIFNSMLSIFAKNNMYERAQKMLDLIRESGLQPD 687


>gi|341605701|gb|AEK82953.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 76/146 (52%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+G  +E   +F  +  KG  P+V  +T +I+ YA +G  ++A+R+  RM+  G  P
Sbjct: 26  GLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKP 85

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY+V++ GL      N ++  +A  Y       G+  N+  Y+++ +   +A ++DE
Sbjct: 86  DVVTYSVVVNGLCK----NGRV-EEALDYFQTCXFNGLAINSXFYSSLIDGLGKAGRIDE 140

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      ALID
Sbjct: 141 AERLFEEMSEKGCTRDSYCYN-ALID 165



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 72/134 (53%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ D+G  PDVV ++ V+      G+ +EAL  F     +G
Sbjct: 58  LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCXFNG 117

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +A N+  Y+ LI GL     G A  + +A++   EM  KG   ++  Y A+ +A  +  K
Sbjct: 118 LAINSXFYSSLIDGL-----GKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALXKHGK 172

Query: 213 VDEARGLLQQMKAK 226
           VDEA  L ++M+ +
Sbjct: 173 VDEAMXLFKRMEEE 186



 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 60/143 (41%), Gaps = 6/143 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
            + L+ ++ +KG        + VI      G+  E   VF  M+  G  PN   Y VLI 
Sbjct: 1   CVALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLID 60

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G A +       + DA + L  M+ +G +P+  TY+ V     +  +V+EA    Q    
Sbjct: 61  GYAKSGS-----VEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCXF 115

Query: 226 KGFVPDEKAVKEALIDKRGQGFR 248
            G   +      +LID  G+  R
Sbjct: 116 NGLAIN-SXFYSSLIDGLGKAGR 137


>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
 gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
          Length = 500

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 76/163 (46%), Gaps = 8/163 (4%)

Query: 72  RNLQEIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           ++  E F +M   G   N      +   L   G   +A  LFA++K     PDVV +  +
Sbjct: 167 KDASERFKQMPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTL 226

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           ++A   A + +E  ++F  M A+G  PN  T++ LI GL    +     L  A +    M
Sbjct: 227 LDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGE-----LEKALEVFGSM 281

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +  G +PN  TYT +     RA+KV +AR L ++M      PD
Sbjct: 282 LEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPD 324



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 77/150 (51%), Gaps = 8/150 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M++   + + V    + DA+ K     E  +LF  ++  G++P+V+  + +I    
Sbjct: 207 LFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLC 266

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G+ ++AL VF  ML +G  PN YTY  LI GL  A     K++  A++   +M    +
Sbjct: 267 RTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRA----EKVI-QARELFEKMTQACI 321

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
            P+A  Y ++   + +   +DEA  L ++M
Sbjct: 322 PPDAVAYNSLIAGYCKRGSMDEAEKLYREM 351



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 79/163 (48%), Gaps = 8/163 (4%)

Query: 81  MRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ 137
           MR + +  N      +  +L K+    E+ ++  ++   G  PDV A   V++ +A +  
Sbjct: 1   MRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNN 60

Query: 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA 197
            ++A  V+  M+ SG  P+  +Y +LI GLA         L ++ K L EMV +G  P+ 
Sbjct: 61  MEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGK-----LDESLKILSEMVMRGQTPSM 115

Query: 198 GTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
             Y+++  A  +A++VD A  L  +M   G  PD     E ++
Sbjct: 116 QAYSSLVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELIL 158



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 5/136 (3%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
           AL+K      A  LF ++   GH PD +    +I     AG+ K+A   F +M   G  P
Sbjct: 124 ALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQP 183

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           N   Y VL+ GL ++       L  A     EM      P+  TY  + +A  +A++V+E
Sbjct: 184 NVPVYNVLLHGLCSSGQ-----LEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEE 238

Query: 216 ARGLLQQMKAKGFVPD 231
              L + M+A G+VP+
Sbjct: 239 GCKLFEAMRAAGYVPN 254



 Score = 63.5 bits (153), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 72/160 (45%), Gaps = 9/160 (5%)

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F  M   G   N      +   L +     +A +LF ++      PD VA+ ++I  Y
Sbjct: 276 EVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGY 335

Query: 133 ASAGQGKEALRVFMRMLA-SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              G   EA +++  M   +G+ P   T+  LI G           LG A + + EM  K
Sbjct: 336 CKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGK-----LGRANELVAEMGTK 390

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G+  ++ TY  +     RA K+DEA  + +QM+ K F+ D
Sbjct: 391 GLAADSCTYRILIAGLSRATKLDEALEVYKQMREKKFLLD 430



 Score = 40.4 bits (93), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 78/186 (41%), Gaps = 34/186 (18%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKD-KGHMPDVVAHTAVIE 130
           +E+F KM    +  +AV    +     K G   EA +L+ ++    G  P +V    +I+
Sbjct: 310 RELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLID 369

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQ----KYLM 186
            +   G+   A  +   M   G+A ++ TY +LI GL+ A   +  +    Q    K+L+
Sbjct: 370 GFCKLGKLGRANELVAEMGTKGLAADSCTYRILIAGLSRATKLDEALEVYKQMREKKFLL 429

Query: 187 EMVG--------------------------KGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
           + V                            G  PN  T+  + E+ ++  +V++A+ L+
Sbjct: 430 DPVSCVSFVGGLCKTGNIDQAYAVFEATRKSGAVPNPETFRILSESLIKLGRVEDAQKLM 489

Query: 221 QQMKAK 226
           +  KA+
Sbjct: 490 EPAKAR 495


>gi|193806393|sp|P0C7Q7.1|PPR38_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial; Flags: Precursor
          Length = 602

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 8/165 (4%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+F +M + G+  + +    + D L  +G   +AL++F  ++       +V +T +IE 
Sbjct: 423 EELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEG 482

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G+ ++A  +F  +   GV PN  TY V+I GL          L +A   L +M   
Sbjct: 483 MCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGS-----LSEANILLRKMEED 537

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK 236
           G  PN  TY  +  A +R   +  +  L+++MK+ GF  D  ++K
Sbjct: 538 GNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIK 582



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 68/139 (48%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + + + G T  AL L  +++++    DV  ++ +I++    G    A+ +F  M   G
Sbjct: 199 IVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKG 258

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +  +  TY  L++GL  A   N     D    L +MV + + PN  T+  + + FV+  K
Sbjct: 259 IKSSVVTYNSLVRGLCKAGKWN-----DGALLLKDMVSREIVPNVITFNVLLDVFVKEGK 313

Query: 213 VDEARGLLQQMKAKGFVPD 231
           + EA  L ++M  +G  P+
Sbjct: 314 LQEANELYKEMITRGISPN 332



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 69/139 (49%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   K+G   EA +L+ ++  +G  P+++ +  +++ Y    +  EA  +   M+ + 
Sbjct: 304 LLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNK 363

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            +P+  T+  LIKG         K + D  K    +  +G+  NA TY+ + + F ++ K
Sbjct: 364 CSPDIVTFTSLIKGYCM-----VKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGK 418

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +  A  L Q+M + G +PD
Sbjct: 419 IKLAEELFQEMVSHGVLPD 437



 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D+L +DG    A+ LF +++ KG    VV + +++     AG+  +   +   M++  
Sbjct: 234 IIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSRE 293

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN  T+ VL+             L +A +   EM+ +G+ PN  TY  + + +    +
Sbjct: 294 IVPNVITFNVLLDVFVKEGK-----LQEANELYKEMITRGISPNIITYNTLMDGYCMQNR 348

Query: 213 VDEARGLLQQMKAKGFVPD 231
           + EA  +L  M      PD
Sbjct: 349 LSEANNMLDLMVRNKCSPD 367



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 63/132 (47%), Gaps = 5/132 (3%)

Query: 100 DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYT 159
           +G   EA+ L  ++ + G  PDVV + +++     +G    AL +  +M    V  + +T
Sbjct: 171 EGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFT 230

Query: 160 YAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGL 219
           Y+ +I  L    DG    +  A     EM  KG++ +  TY ++     +A K ++   L
Sbjct: 231 YSTIIDSL--CRDG---CIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALL 285

Query: 220 LQQMKAKGFVPD 231
           L+ M ++  VP+
Sbjct: 286 LKDMVSREIVPN 297



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/136 (22%), Positives = 62/136 (45%), Gaps = 5/136 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M +   +   T  A  +  ++   G+ PD      +I+     G+  EA+ +  RM+ +G
Sbjct: 129 MINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENG 188

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  TY  ++ G+  + D +      A   L +M  + ++ +  TY+ + ++  R   
Sbjct: 189 CQPDVVTYNSIVNGICRSGDTSL-----ALDLLRKMEERNVKADVFTYSTIIDSLCRDGC 243

Query: 213 VDEARGLLQQMKAKGF 228
           +D A  L ++M+ KG 
Sbjct: 244 IDAAISLFKEMETKGI 259


>gi|449530359|ref|XP_004172163.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Cucumis sativus]
          Length = 831

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 79/153 (51%), Gaps = 6/153 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +  +  +  L  EA ++F ++K  G  PD V + A+++ Y  + + +EA+ V   M ASG
Sbjct: 297 LISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASG 356

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            AP+  TY  LI   A A DG   +L +A +   +MV KG++P+  TYT +   F +  K
Sbjct: 357 FAPSIVTYNSLIS--AYARDG---LLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGK 411

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
            D A  + ++M+  G  P+      ALI   G 
Sbjct: 412 DDYAMKVFEEMRVAGCQPN-ICTFNALIKMHGN 443



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 8/164 (4%)

Query: 71  PRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           PR   E+  +M   G   + V    +  A ++DGL  EA++L +Q+  KG  PDV  +T 
Sbjct: 342 PREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTT 401

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           ++  +   G+   A++VF  M  +G  PN  T+  LIK       GN     +  K   E
Sbjct: 402 LLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIK-----MHGNRGNFVEMMKVFEE 456

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +      P+  T+  +   F +     E  G+ ++MK  GFVP+
Sbjct: 457 IKICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPE 500



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 80/164 (48%), Gaps = 6/164 (3%)

Query: 86  LTNNAVK-MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRV 144
           L+N+ V  +   L K+G    A  L   +++ G   D+ A+T++I AYAS G+ +EA+ V
Sbjct: 183 LSNSVVAVIISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMV 242

Query: 145 FMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVF 204
           F ++   G  P   TY V++          +KI G        M   G+ P+  TY  + 
Sbjct: 243 FKKLEEEGCRPTLITYNVILNVYGKMGMPWSKIAGLVDS----MKSSGVAPDLYTYNTLI 298

Query: 205 EAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFR 248
            +  R    +EA  + ++MKA GF PD K    AL+D  G+  R
Sbjct: 299 SSCRRGSLYEEAAEVFEEMKAAGFSPD-KVTYNALLDVYGKSRR 341



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 14/156 (8%)

Query: 75  QEIFHKMRTEGLT------NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
            EI + ++  G T      N+ + M+   S+     ++  +  +I  KG  PD+++   V
Sbjct: 661 NEILNFIKDSGFTPSLTTYNSLMYMY---SRTEHFEKSEDILREIIAKGMKPDIISFNTV 717

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I AY   G+ KEA R+F  M   G+AP+  TY   I   A+ +     I  D  KY   M
Sbjct: 718 IFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASYASDSMFIEAI--DVVKY---M 772

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           +    +PN  TY ++ + F +  + DEA   +  ++
Sbjct: 773 IKNECKPNQNTYNSLIDWFCKLNRRDEANSFISNLR 808



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 76/172 (44%), Gaps = 21/172 (12%)

Query: 99  KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAY 158
           ++G+  E   +F ++K  G +P+      +I AY+  G   +A+ ++ RML +GV P+  
Sbjct: 478 QNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLS 537

Query: 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218
           TY  ++  LA        +   ++K L EM     +PN  TY ++  A+   ++V+    
Sbjct: 538 TYNAVLAALARGG-----LWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEVERMSA 592

Query: 219 LLQQMKAKGFVPDEKAVK----------------EALIDKRGQGFRGVINIL 254
           L +++ +    P    +K                 A ++ R QGF   I  L
Sbjct: 593 LAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPDITTL 644



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 69/161 (42%), Gaps = 10/161 (6%)

Query: 76  EIFHKMRTEGLTNNAVKMFDALSK----DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           ++F +MR  G   N +  F+AL K     G   E +++F +IK    +PD+V    ++  
Sbjct: 417 KVFEEMRVAGCQPN-ICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAV 475

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +   G   E   VF  M  +G  P   T+  LI     +A         A      M+  
Sbjct: 476 FGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLI-----SAYSRCGFFDQAMAIYRRMLDA 530

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           G+ P+  TY AV  A  R    +++  +L +MK     P+E
Sbjct: 531 GVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNE 571



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 61/134 (45%), Gaps = 5/134 (3%)

Query: 98  SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA 157
           SK  L  E  + F +++++G  PD+    A++  Y       +   +   +  SG  P+ 
Sbjct: 617 SKSDLLTETERAFLELREQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSL 676

Query: 158 YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
            TY  L+   +       +    ++  L E++ KGM+P+  ++  V  A+ R  ++ EA 
Sbjct: 677 TTYNSLMYMYS-----RTEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEAS 731

Query: 218 GLLQQMKAKGFVPD 231
            +  +MK  G  PD
Sbjct: 732 RIFAEMKDFGLAPD 745



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 3/96 (3%)

Query: 74  LQEIFHK-MRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           L+EI  K M+ + ++ N V    A  ++G   EA ++FA++KD G  PDV+ +   I +Y
Sbjct: 699 LREIIAKGMKPDIISFNTVIF--AYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASY 756

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
           AS     EA+ V   M+ +   PN  TY  LI    
Sbjct: 757 ASDSMFIEAIDVVKYMIKNECKPNQNTYNSLIDWFC 792



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/187 (19%), Positives = 73/187 (39%), Gaps = 33/187 (17%)

Query: 77  IFHKMRTEGLT---NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M+  G     +    +  A S+ G   +A+ ++ ++ D G  PD+  + AV+ A A
Sbjct: 488 VFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALA 547

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD--------------------- 172
             G  +++ +V   M      PN  TY  L+   A   +                     
Sbjct: 548 RGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEVERMSALAEEIYSGIIEPQAV 607

Query: 173 ---------GNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
                      + +L + ++  +E+  +G  P+  T  A+   + R + V +   +L  +
Sbjct: 608 LLKTLVLVYSKSDLLTETERAFLELREQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFI 667

Query: 224 KAKGFVP 230
           K  GF P
Sbjct: 668 KDSGFTP 674


>gi|224125420|ref|XP_002329801.1| predicted protein [Populus trichocarpa]
 gi|222870863|gb|EEF07994.1| predicted protein [Populus trichocarpa]
          Length = 478

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 79/159 (49%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           EIF +M   G   ++     + + L K G T EA +LF ++  KG  P VV ++ ++   
Sbjct: 177 EIFREMPKRGCDPDSYTYGTLINGLCKLGKTFEAKELFKEMDTKGCSPSVVTYSCLMHGL 236

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             AG   EA+ +F +M    + PN +TY+ L+ GL      N   L +A + L  MV K 
Sbjct: 237 CQAGNVDEAMGLFDKMKKKAIEPNVFTYSSLMDGLCK----NGGSL-EAMELLEMMVRKR 291

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +PN  TY+ +     +  K+ EA   L +MK +G  PD
Sbjct: 292 HKPNMVTYSTLINGLCKEGKLAEAVETLDRMKLQGLKPD 330



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 62/128 (48%), Gaps = 8/128 (6%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F KM+ + +  N      + D L K+G + EA++L   +  K H P++V ++ +I    
Sbjct: 248 LFDKMKKKAIEPNVFTYSSLMDGLCKNGGSLEAMELLEMMVRKRHKPNMVTYSTLINGLC 307

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G+  EA+    RM   G+ P+A  Y  +I G       N +   +A  YL EMV   +
Sbjct: 308 KEGKLAEAVETLDRMKLQGLKPDAGLYGKIINGFC-----NIRKFQEAATYLDEMVLGQI 362

Query: 194 RPNAGTYT 201
            PN  T++
Sbjct: 363 SPNRVTWS 370



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 77/161 (47%), Gaps = 15/161 (9%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K+G   EA++   ++K +G  PD   +  +I  + +  + +EA      M+   
Sbjct: 302 LINGLCKEGKLAEAVETLDRMKLQGLKPDAGLYGKIINGFCNIRKFQEAATYLDEMVLGQ 361

Query: 153 VAPNAYTYAV-------LIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFE 205
           ++PN  T+++       +++GL    +GN   L  + +  + M  +G+  +AGT+ ++ +
Sbjct: 362 ISPNRVTWSLHVKLNNMVVQGL--CTNGN---LNRSFQLYIGMRTRGISIDAGTFDSLVK 416

Query: 206 AFVRAQKVDEARGLLQQMKAKGFVPDE---KAVKEALIDKR 243
            F +   + +A  +  +M   G VPD     AV     D+R
Sbjct: 417 CFCKKGDLHKAARIFDEMVLDGCVPDHGIWSAVVGGFWDRR 457


>gi|297805886|ref|XP_002870827.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316663|gb|EFH47086.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 582

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 90/172 (52%), Gaps = 13/172 (7%)

Query: 63  VVDEEPTDPRNLQEIFHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIKDKGH 118
           +V E  TD   + +IF KM   G+  N + +++ L    SK G + +A +L +++++KG 
Sbjct: 178 LVKERLTD--TVWKIFKKMVKLGVVAN-IHVYNVLVHACSKSGDSEKAEKLLSEMEEKGV 234

Query: 119 MPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKIL 178
            PD+  +  +I  Y       EAL V  RM  SGVAP+  TY  LI G   + +G  +  
Sbjct: 235 FPDIFTYNTLISVYCKKSMHFEALSVQDRMERSGVAPDIVTYNSLIHGF--SREGRMR-- 290

Query: 179 GDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
            +A +   ++ G  M  N  TYT + + + R   +DEA  L + M+++GF P
Sbjct: 291 -EATRLFRKIKGVVM-ANHVTYTTLIDGYCRMNDIDEALRLREVMESRGFCP 340



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 5/135 (3%)

Query: 97  LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
           L +DG   EA +L  ++  K   PD +    +I AY        A++V  +M+ SG+  +
Sbjct: 352 LCEDGRIREANRLLTEMSVKKIEPDNITCNTLINAYCKIEDMVSAVKVKKKMIESGLKLD 411

Query: 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
            Y+Y  LI G     +     L +A++ L  M+ KG+ P    Y+ + + F    K DE 
Sbjct: 412 MYSYKALIHGFCKVLE-----LDNAKEELFSMIEKGLSPGYSAYSWLVDGFYNQNKQDEI 466

Query: 217 RGLLQQMKAKGFVPD 231
             L ++ + +G  PD
Sbjct: 467 TKLPEEFEKRGLCPD 481



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/230 (23%), Positives = 97/230 (42%), Gaps = 24/230 (10%)

Query: 7   LRWLLHS-----PSPKRSLRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFK 61
           L W  +S     PS K SL+ +   +    + +   ++ Q   K ++ +  L  P    +
Sbjct: 62  LSWSFYSWTDSLPSCKHSLQSSWKMILILTKHNHFKTAHQLLDK-LSQRELLSSPL-VLR 119

Query: 62  KVVDEEPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPD 121
            +V     DP  L  +F          + + +F A  K G+ ++++ +F QI   G  P 
Sbjct: 120 SLVGGVSEDPEVLSHVF----------SWLMIFYA--KSGMINDSIAVFEQIMSCGLKPH 167

Query: 122 VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDA 181
           + A T ++ +           ++F +M+  GV  N + Y VL+   + + D        A
Sbjct: 168 LQACTVLLNSLVKERLTDTVWKIFKKMVKLGVVANIHVYNVLVHACSKSGDSE-----KA 222

Query: 182 QKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +K L EM  KG+ P+  TY  +   + +     EA  +  +M+  G  PD
Sbjct: 223 EKLLSEMEEKGVFPDIFTYNTLISVYCKKSMHFEALSVQDRMERSGVAPD 272


>gi|242067235|ref|XP_002448894.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
 gi|241934737|gb|EES07882.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
          Length = 796

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 78/161 (48%), Gaps = 11/161 (6%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKD---KGHMPDVVAHTAVIE 130
           +  +M   G T N V    +      +    EAL+L   + D   +   P++V++  VI 
Sbjct: 153 LLRRMSELGCTPNVVSYNTLLKGFCDENRAEEALELLHMMADGQVRSCPPNLVSYNTVIN 212

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
            + + GQ  +A  +F+ M   G+ PN  TY ++I GL       A+++  A+    +M+ 
Sbjct: 213 GFFTEGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLC-----KAQVVDRAEGVFQQMID 267

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           KG+RPN  TYT +   ++   +  E   +L++M A G  PD
Sbjct: 268 KGVRPNIVTYTCLIHGYLSIGQWKEVVRMLKEMSAHGLEPD 308



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/188 (27%), Positives = 80/188 (42%), Gaps = 33/188 (17%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F  M  +G+  N V    + D L K  +   A  +F Q+ DKG  P++V +T +I  Y 
Sbjct: 226 LFLDMTDQGIPPNVVTYTIVIDGLCKAQVVDRAEGVFQQMIDKGVRPNIVTYTCLIHGYL 285

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVL------------------------------ 163
           S GQ KE +R+   M A G+ P+ +TY +L                              
Sbjct: 286 SIGQWKEVVRMLKEMSAHGLEPDCFTYGLLLDYLCKKGKCTEARKLFDSMIRKGIKPDVS 345

Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           I G+          L +   +L  MVG G+ PN   +  VF AF +   + EA  +  +M
Sbjct: 346 IYGIILHGYATKGALSEMHSFLDLMVGNGISPNHYIFNIVFCAFAKKAMIGEAMDIFNKM 405

Query: 224 KAKGFVPD 231
           + +G  P+
Sbjct: 406 RQQGLSPN 413



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 48/188 (25%), Positives = 84/188 (44%), Gaps = 33/188 (17%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +IF+KMR +GL+ N V    + DAL K G   +A   F Q+ ++G  P++V  T+++   
Sbjct: 400 DIFNKMRQQGLSPNVVNYATLIDALCKLGRVDDAELKFNQMINEGVAPNIVVFTSLVYGL 459

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA--------------------- 171
            +  + ++A  +F  M+  G+ PN   +  ++  L                         
Sbjct: 460 CTIDKWEKAGELFFEMVNQGIHPNVVFFNTIMCNLCTEGRVMKAQRLIDLMERVGTRPDI 519

Query: 172 -DGNAKILG--------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
              NA I G        +A K L  M+  G++PN  TY  +   + R  ++D+A  + Q+
Sbjct: 520 ISYNALIRGHCLVGKTDEASKLLDIMLSVGLKPNECTYNTLLHGYCRDGRIDDAYSVFQE 579

Query: 223 MKAKGFVP 230
           M + G  P
Sbjct: 580 MLSNGITP 587



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 43/132 (32%), Positives = 60/132 (45%), Gaps = 5/132 (3%)

Query: 100 DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYT 159
           +G   +A  LF  + D+G  P+VV +T VI+    A     A  VF +M+  GV PN  T
Sbjct: 217 EGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVVDRAEGVFQQMIDKGVRPNIVT 276

Query: 160 YAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGL 219
           Y  LI G  +       +     + L EM   G+ P+  TY  + +   +  K  EAR L
Sbjct: 277 YTCLIHGYLSIGQWKEVV-----RMLKEMSAHGLEPDCFTYGLLLDYLCKKGKCTEARKL 331

Query: 220 LQQMKAKGFVPD 231
              M  KG  PD
Sbjct: 332 FDSMIRKGIKPD 343



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K G   EA +LF  +  KG  PDV  +  ++  YA+ G   E       M+ +G
Sbjct: 315 LLDYLCKKGKCTEARKLFDSMIRKGIKPDVSIYGIILHGYATKGALSEMHSFLDLMVGNG 374

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           ++PN Y + ++    A  A     ++G+A     +M  +G+ PN   Y  + +A  +  +
Sbjct: 375 ISPNHYIFNIVFCAFAKKA-----MIGEAMDIFNKMRQQGLSPNVVNYATLIDALCKLGR 429

Query: 213 VDEARGLLQQMKAKGFVPD 231
           VD+A     QM  +G  P+
Sbjct: 430 VDDAELKFNQMINEGVAPN 448



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/155 (27%), Positives = 72/155 (46%), Gaps = 8/155 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F +M  +G+  N V    +   L  +G   +A +L   ++  G  PD++++ A+I  +
Sbjct: 470 ELFFEMVNQGIHPNVVFFNTIMCNLCTEGRVMKAQRLIDLMERVGTRPDIISYNALIRGH 529

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+  EA ++   ML+ G+ PN  TY  L+ G     DG    + DA     EM+  G
Sbjct: 530 CLVGKTDEASKLLDIMLSVGLKPNECTYNTLLHGY--CRDGR---IDDAYSVFQEMLSNG 584

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
           + P   TY  +     + ++  EA+ L   M   G
Sbjct: 585 ITPVVVTYNTILHGLFKTRRFSEAKELYLNMITSG 619



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/139 (28%), Positives = 69/139 (49%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +F A +K  +  EA+ +F +++ +G  P+VV +  +I+A    G+  +A   F +M+  G
Sbjct: 385 VFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALCKLGRVDDAELKFNQMINEG 444

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           VAPN   +  L+ GL    D   K    A +   EMV +G+ PN   +  +        +
Sbjct: 445 VAPNIVVFTSLVYGL-CTIDKWEK----AGELFFEMVNQGIHPNVVFFNTIMCNLCTEGR 499

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V +A+ L+  M+  G  PD
Sbjct: 500 VMKAQRLIDLMERVGTRPD 518



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 33/147 (22%), Positives = 69/147 (46%), Gaps = 8/147 (5%)

Query: 99  KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAY 158
           +DG   +A  +F ++   G  P VV +  ++       +  EA  +++ M+ SG   + Y
Sbjct: 566 RDGRIDDAYSVFQEMLSNGITPVVVTYNTILHGLFKTRRFSEAKELYLNMITSGKQWSIY 625

Query: 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218
           TY +++ GL+         + +A K    +  K ++ +  T+  +  A ++  + ++A  
Sbjct: 626 TYNIILNGLS-----KNNCVDEALKMFQSLCSKDLQVDIITFNIMIGALLKDGRKEDAMN 680

Query: 219 LLQQMKAKGFVPD---EKAVKEALIDK 242
           L   + A G VPD    + + E LI++
Sbjct: 681 LFATISANGLVPDVTTYRLIAENLIEE 707



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 52/119 (43%), Gaps = 5/119 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M  AL KDG   +A+ LFA I   G +PDV  +  + E     G  +E   +F  M  SG
Sbjct: 665 MIGALLKDGRKEDAMNLFATISANGLVPDVTTYRLIAENLIEEGSLEEFDGMFSEMEKSG 724

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
            APN+     L++ L    D     +  A  YL ++  K     A T + +   F R +
Sbjct: 725 CAPNSLMLNFLVRRLLLRGD-----ISRAGAYLSKIDEKNFSLEASTTSMLISLFSREE 778



 Score = 45.1 bits (105), Expect = 0.033,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 67/159 (42%), Gaps = 12/159 (7%)

Query: 75  QEIFHKMRTEG-----LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           +E++  M T G      T N +   + LSK+    EAL++F  +  K    D++    +I
Sbjct: 609 KELYLNMITSGKQWSIYTYNII--LNGLSKNNCVDEALKMFQSLCSKDLQVDIITFNIMI 666

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
            A    G+ ++A+ +F  + A+G+ P+  TY ++ + L          L +      EM 
Sbjct: 667 GALLKDGRKEDAMNLFATISANGLVPDVTTYRLIAENLIEEGS-----LEEFDGMFSEME 721

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
             G  PN+     +    +    +  A   L ++  K F
Sbjct: 722 KSGCAPNSLMLNFLVRRLLLRGDISRAGAYLSKIDEKNF 760


>gi|449507709|ref|XP_004163108.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 999

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 50/163 (30%), Positives = 82/163 (50%), Gaps = 12/163 (7%)

Query: 75  QEIFHKMRTEGLTNNAVKMFDALSKD----GLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           +  F  M + G+  N V ++  L K     G T EAL  F  + +KG +PD+ A++A+I 
Sbjct: 576 ERYFKDMLSSGIVPNNV-IYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIH 634

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
           + +  G+ KEA+ VF++ L +GV P+ + Y  LI G     D     +  A +   EM+ 
Sbjct: 635 SLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGD-----IEKASQLYDEMLH 689

Query: 191 KGMRPNAGTYTAVFE--AFVRAQKVDEARGLLQQMKAKGFVPD 231
            G+ PN   Y  +     + ++  + EA  L  +M +KG  PD
Sbjct: 690 NGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMISKGISPD 732



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 45/158 (28%), Positives = 78/158 (49%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           IF  M + GL  N      + D   K+G   EAL++  ++  +G   +VV + A+I   A
Sbjct: 333 IFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIA 392

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG+  +A+ +F  ML +G+ P+ +TY +LI G   + D     +  A + L EM  + +
Sbjct: 393 KAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHD-----MAKACELLAEMKARKL 447

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            P+  TY+ +      +  + +A  +L QM   G  P+
Sbjct: 448 TPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPN 485



 Score = 70.1 bits (170), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 46/158 (29%), Positives = 78/158 (49%), Gaps = 7/158 (4%)

Query: 74  LQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           L E+  + +    T NA      L + G   EAL++   + +KG  PD   +T +++ + 
Sbjct: 265 LSEMEKECKPNLFTYNA--FIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFC 322

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
              + KEA  +F  M +SG+ PN +TY  LI G     +GN +   +A +   EM+ +G+
Sbjct: 323 KQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGF--IKEGNIE---EALRIKDEMITRGL 377

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + N  TY A+     +A ++ +A  L  +M   G  PD
Sbjct: 378 KLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPD 415



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/212 (23%), Positives = 89/212 (41%), Gaps = 50/212 (23%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVKMF-------------------DALSKDGLTHEALQLF 110
           D R    I H +   G T  A+ +F                       K+G   +A QL+
Sbjct: 625 DIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLY 684

Query: 111 AQIKDKGHMPDVVAHTAVIE--AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKG-- 166
            ++   G  P++V +  +I    Y  +G   EA ++F  M++ G++P+ Y Y +LI G  
Sbjct: 685 DEMLHNGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCG 744

Query: 167 --------LAAAADGNAKILG-------------------DAQKYLMEMVGKGMRPNAGT 199
                   L+   +   K +G                   +A++   +MV K + PN  T
Sbjct: 745 KEGNLEKALSLFHEAQQKSVGSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVT 804

Query: 200 YTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           YT + +A+ +A+ ++EA  L   M+ +  +P+
Sbjct: 805 YTILIDAYGKAEMMEEAEQLFLDMETRNIIPN 836



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/127 (32%), Positives = 62/127 (48%), Gaps = 5/127 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA  L   + +KG  P+   + A I  Y+ +G+ + A R F  ML+SG+ PN   Y +LI
Sbjct: 539 EAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILI 598

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           KG      GN     +A      M+ KG+ P+   Y+A+  +  +  K  EA G+  +  
Sbjct: 599 KGHCDV--GNTV---EALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFL 653

Query: 225 AKGFVPD 231
             G VPD
Sbjct: 654 KTGVVPD 660



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 81/161 (50%), Gaps = 12/161 (7%)

Query: 76  EIFHKMRTEGLTNNAVKMFDALSKDGLTH-----EALQLFAQIKDKGHMPDVVAHTAVIE 130
           E+  +M+   LT +       +S  GL H     +A ++  Q+   G  P+V  +  +I+
Sbjct: 437 ELLAEMKARKLTPSPFTYSVLIS--GLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIK 494

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
           AY    + + A+ +   M+A+GV P+ + Y  LI GL       AK + +A+  L++M  
Sbjct: 495 AYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLC-----RAKKVEEAKMLLVDMGE 549

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           KG++PNA TY A    + ++ ++  A    + M + G VP+
Sbjct: 550 KGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPN 590



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   K     +A +L A++K +   P    ++ +I     +   ++A  V  +M+ +G
Sbjct: 422 LIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNG 481

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V PN + Y  LIK     +     I     + L  M+  G+ P+   Y  +     RA+K
Sbjct: 482 VKPNVFMYGTLIKAYVQESRYEMAI-----ELLKIMIANGVLPDLFCYNCLIIGLCRAKK 536

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V+EA+ LL  M  KG  P+
Sbjct: 537 VEEAKMLLVDMGEKGIKPN 555



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/169 (23%), Positives = 74/169 (43%), Gaps = 8/169 (4%)

Query: 69  TDPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAH 125
           +D +   E+  +M   G+  N      +  A  ++     A++L   +   G +PD+  +
Sbjct: 465 SDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCY 524

Query: 126 TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185
             +I     A + +EA  + + M   G+ PNA+TY   I   + + +     +  A++Y 
Sbjct: 525 NCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGE-----IQVAERYF 579

Query: 186 MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
            +M+  G+ PN   YT + +         EA    + M  KG +PD +A
Sbjct: 580 KDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRA 628



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 47/167 (28%), Positives = 83/167 (49%), Gaps = 10/167 (5%)

Query: 77  IFHKMRTEGLTNNAV--KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           +FH+ + + + + +    + D+  K G   EA +LF  + DK   P++V +T +I+AY  
Sbjct: 755 LFHEAQQKSVGSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGK 814

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNA-KILGDAQKYLMEMVGKGM 193
           A   +EA ++F+ M    + PN  TY  L+  L+    GN  K++        +M  +G+
Sbjct: 815 AEMMEEAEQLFLDMETRNIIPNTLTYTSLL--LSYNQIGNRFKMI----SLFKDMEARGI 868

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
             +A  Y  +  A+ +  K  EA  LL +   +G +  E  V +ALI
Sbjct: 869 ACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEG-IKLEDDVFDALI 914



 Score = 50.4 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 45/202 (22%), Positives = 86/202 (42%), Gaps = 33/202 (16%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+F  M  + LT N V    + DA  K  +  EA QLF  ++ +  +P+ + +T+++ +
Sbjct: 787 RELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLS 846

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAV---------------------LIKGLAAA 170
           Y   G   + + +F  M A G+A +A  Y V                     L++G+   
Sbjct: 847 YNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIKLE 906

Query: 171 AD---------GNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221
            D            K +    + L EM  + +  ++ T   +   F ++   DEA  +L 
Sbjct: 907 DDVFDALIFHLCKEKQISTVLELLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEASKVLG 966

Query: 222 QMKAKGFVPDEKAVKEALIDKR 243
            M+  G+VP   ++ +++   R
Sbjct: 967 VMQRLGWVPTSLSLTDSISTGR 988



 Score = 45.1 bits (105), Expect = 0.029,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 6/131 (4%)

Query: 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
           G  +EA  +F     +G  P ++    ++     A       +V+  M+ + + P+ YTY
Sbjct: 186 GFLNEASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTY 245

Query: 161 AVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
             +IK      D    I G   K ++  + K  +PN  TY A      +   VDEA  + 
Sbjct: 246 TNVIKAHCKVGD---VIKG---KMVLSEMEKECKPNLFTYNAFIGGLCQTGAVDEALEVK 299

Query: 221 QQMKAKGFVPD 231
           + M  KG  PD
Sbjct: 300 KLMMEKGLGPD 310


>gi|12321310|gb|AAG50731.1|AC079041_24 PPR-repeat protein, putative [Arabidopsis thaliana]
          Length = 690

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 80/158 (50%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           ++ +M  +G++ N V    +   L +DG  +EA  ++ QI  +G  P +V ++++I+ + 
Sbjct: 378 VYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFC 437

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G  +    ++  M+  G  P+   Y VL+ GL+        ++  A ++ ++M+G+ +
Sbjct: 438 KCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQG-----LMLHAMRFSVKMLGQSI 492

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           R N   + ++ + + R  + DEA  + + M   G  PD
Sbjct: 493 RLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPD 530



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F  M   G+  + +    + D   K G+     +LF+Q   KG   DVV  ++ I+ Y
Sbjct: 307 DLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVY 366

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             +G    A  V+ RML  G++PN  TY +LIKGL    DG    + +A     +++ +G
Sbjct: 367 VKSGDLATASVVYKRMLCQGISPNVVTYTILIKGL--CQDGR---IYEAFGMYGQILKRG 421

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           M P+  TY+++ + F +   +     L + M   G+ PD
Sbjct: 422 MEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPD 460



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 72/185 (38%), Gaps = 33/185 (17%)

Query: 80  KMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           KM  + +  N V    + D   +     EAL++F  +   G  PDV   T V+      G
Sbjct: 486 KMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPDVATFTTVMRVSIMEG 545

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGL----------------------AAAADGN 174
           + +EAL +F RM   G+ P+A  Y  LI                         A  A  N
Sbjct: 546 RLEEALFLFFRMFKMGLEPDALAYCTLIDAFCKHMKPTIGLQLFDLMQRNKISADIAVCN 605

Query: 175 AKI--------LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK 226
             I        + DA K+   ++   M P+  TY  +   +   +++DEA  + + +K  
Sbjct: 606 VVIHLLFKCHRIEDASKFFNNLIEGKMEPDIVTYNTMICGYCSLRRLDEAERIFELLKVT 665

Query: 227 GFVPD 231
            F P+
Sbjct: 666 PFGPN 670



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 5/120 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D LSK GL   A++   ++  +    +VV   ++I+ +    +  EAL+VF  M   G
Sbjct: 467 LVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYG 526

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+  T+  +++   +  +G    L +A      M   G+ P+A  Y  + +AF +  K
Sbjct: 527 IKPDVATFTTVMR--VSIMEGR---LEEALFLFFRMFKMGLEPDALAYCTLIDAFCKHMK 581


>gi|449499490|ref|XP_004160831.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 45/163 (27%), Positives = 85/163 (52%), Gaps = 8/163 (4%)

Query: 72  RNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           ++ +++   M  +G   N +    + D   K     EA ++F ++ ++G+ P+V  ++++
Sbjct: 662 KDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVERGYNPNVYTYSSL 721

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I+      +    L+V  +ML +  APN   Y  +I GL+  A  +     +A K ++ M
Sbjct: 722 IDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTD-----EAYKLMLMM 776

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             KG +PN  TYTA+ + F +A KVD+   L ++M +KG  P+
Sbjct: 777 EEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPN 819



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 51/170 (30%), Positives = 83/170 (48%), Gaps = 9/170 (5%)

Query: 75  QEIFHKMRTEGLTNNAVKMFD---ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           ++ +++M + G   N V +      L   G   +A ++  ++   G +PD   ++ VI  
Sbjct: 439 EKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVIGF 498

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
             +A + + A  +F  M  +GV P+ YTY +LI   + A      I+  A  +L EMV  
Sbjct: 499 LCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAG-----IIKQAHNWLDEMVRD 553

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           G  P   TYT +  A+++A+KV  A  L + M AKG  P+      ALID
Sbjct: 554 GCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPN-VITYTALID 602



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 56/179 (31%), Positives = 84/179 (46%), Gaps = 15/179 (8%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M+  G+  +      + D  SK G+  +A     ++   G  P VV +T +I AY 
Sbjct: 511 LFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYL 570

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKG------LAAAADGNAKILGDAQKYLME 187
            A +   A  +F  M+A G  PN  TY  LI G      +  A    A++ GDA    ++
Sbjct: 571 KAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVD 630

Query: 188 MVGK-----GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           M  K       +PN  TY A+ +   +A KV +AR LL+ M   G  P+   V +ALID
Sbjct: 631 MYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPN-TIVYDALID 688



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 50/158 (31%), Positives = 76/158 (48%), Gaps = 10/158 (6%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++  KM       N V   +M D LSK   T EA +L   +++KG  P+VV +TA+I+ +
Sbjct: 736 KVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGF 795

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             AG+  + L +F  M + G APN  TY VLI    A        L +A   L EM    
Sbjct: 796 GKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGH-----LDEAYALLEEMKQTY 850

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
              +  +Y  V E + R   +  + GLL++++  G  P
Sbjct: 851 WPKHVSSYCKVIEGYKREFIL--SLGLLEEVEKNGSAP 886



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 43/175 (24%), Positives = 76/175 (43%), Gaps = 24/175 (13%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDV---------- 122
           E+F  M  +G   N +    + D   K G   +A Q++A+++    +PDV          
Sbjct: 580 ELFELMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNV 639

Query: 123 ------VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK 176
                 V + A+++    A + K+A  +   M   G  PN   Y  LI G   AA     
Sbjct: 640 AEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAK---- 695

Query: 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            L +AQ+   +MV +G  PN  TY+++ +   + +++D    +L +M      P+
Sbjct: 696 -LDEAQEVFHKMVERGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPN 749



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/159 (25%), Positives = 75/159 (47%), Gaps = 12/159 (7%)

Query: 70  DPRNLQEIFHKMRTE-GLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMPDVVAH 125
           D  +  ++ H+  +E GL+ +   +     AL K G   EAL L   I+ +  +P+ + +
Sbjct: 255 DKLDTAQLVHREMSELGLSMDEFTLGFFAQALCKVGKWREALSL---IEKEDFVPNTILY 311

Query: 126 TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185
             +I     A   +EA+    RM ++   PN  TY +L+ G       N K LG  ++ L
Sbjct: 312 NKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCL-----NKKQLGRCKRIL 366

Query: 186 MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
             M+ +G  P+   + ++  A+ ++     A  LL++M+
Sbjct: 367 SMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKME 405



 Score = 46.2 bits (108), Expect = 0.014,   Method: Composition-based stats.
 Identities = 48/187 (25%), Positives = 70/187 (37%), Gaps = 39/187 (20%)

Query: 81  MRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI-------- 129
           M  +G   N V    M D   K G   + L+LF ++  KG  P+ V +T +I        
Sbjct: 776 MEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGH 835

Query: 130 --EAYASAGQGKEAL----------------RVFMRMLA-------SGVAPNAYTYAVLI 164
             EAYA   + K+                  R F+  L        +G AP    Y VLI
Sbjct: 836 LDEAYALLEEMKQTYWPKHVSSYCKVIEGYKREFILSLGLLEEVEKNGSAPTILLYKVLI 895

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
                A  G  ++  +  K ++      M      YT++  +F  A K+D A  L   M 
Sbjct: 896 DNFVKA--GRLEVALELHKEVIS-ASMSMTAKKNLYTSLIYSFSYASKIDHAFELFYDMI 952

Query: 225 AKGFVPD 231
             G +PD
Sbjct: 953 RDGVIPD 959



 Score = 39.3 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 58/133 (43%), Gaps = 8/133 (6%)

Query: 99  KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAY 158
           ++GL + AL+   ++KD G+ P  + + A+++ +  A +   A  V   M   G++ + +
Sbjct: 218 RNGLWNVALEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLVHREMSELGLSMDEF 277

Query: 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218
           T     + L          +G  ++ L  +  +   PN   Y  +      A   +EA  
Sbjct: 278 TLGFFAQALCK--------VGKWREALSLIEKEDFVPNTILYNKMISGLCEASFFEEAMD 329

Query: 219 LLQQMKAKGFVPD 231
            L +M++   +P+
Sbjct: 330 FLNRMRSTSCIPN 342



 Score = 38.5 bits (88), Expect = 3.1,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 56/113 (49%), Gaps = 7/113 (6%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYT--YAVL 163
           +L L  +++  G  P ++ +  +I+ +  AG+ + AL +   ++++ ++  A    Y  L
Sbjct: 872 SLGLLEEVEKNGSAPTILLYKVLIDNFVKAGRLEVALELHKEVISASMSMTAKKNLYTSL 931

Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
           I   + A+      +  A +   +M+  G+ P+ GT+  +    +R ++ +EA
Sbjct: 932 IYSFSYASK-----IDHAFELFYDMIRDGVIPDLGTFVHLLMGLIRVRRWEEA 979


>gi|297835856|ref|XP_002885810.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331650|gb|EFH62069.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 536

 Score = 79.7 bits (195), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 81/160 (50%), Gaps = 7/160 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G  H A ++  ++   G  PDVV  T++I+ Y   GQ  +  R++  M A G
Sbjct: 318 LVDGYAKAGEMHTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVNQGFRLWEEMNARG 377

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PNA+TY++LI  L          L  A++ L ++  K + P    Y  V + F +A K
Sbjct: 378 MFPNAFTYSILINALCKENR-----LLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGK 432

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDK--RGQGFRGV 250
           V+EA  ++++M+ K   PD+      +I    +G+ F  V
Sbjct: 433 VNEAIVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAV 472



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 70/128 (54%), Gaps = 6/128 (4%)

Query: 105 EALQLFAQIKDK-GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
           +A ++F  +K   G  PDVV +T++I  Y  AG+ +EA  +   ML  G+ P   T+ VL
Sbjct: 259 KANEMFDDVKSSSGCSPDVVTYTSMISGYCKAGKMQEASVLLDDMLRLGIYPTNVTFNVL 318

Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           + G A A +     +  A++   +M+  G  P+  T+T++ + + R  +V++   L ++M
Sbjct: 319 VDGYAKAGE-----MHTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVNQGFRLWEEM 373

Query: 224 KAKGFVPD 231
            A+G  P+
Sbjct: 374 NARGMFPN 381



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 9/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           ++ +M   G+  NA     + +AL K+    +A +L  Q+  K  +P    +  VI+ + 
Sbjct: 369 LWEEMNARGMFPNAFTYSILINALCKENRLLKARELLGQLASKDIIPQPFMYNPVIDGFC 428

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG+  EA+ +   M      P+  T+ +LI G           + +A     +MV  G 
Sbjct: 429 KAGKVNEAIVIVEEMEKKKCKPDKITFTILIIGHCMKGR-----MFEAVSIFHKMVAIGC 483

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            P+  T +++    ++A    EA   L Q+  KG + D
Sbjct: 484 SPDKITVSSLLSCLLKAGMAKEAYH-LNQIAHKGQIND 520



 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 61/155 (39%), Gaps = 6/155 (3%)

Query: 77  IFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           +      EG       + + L K     +A++LF +        D      +I      G
Sbjct: 161 LLQSYEVEGCCMVVNSLLNTLVKLDRVEDAMKLFEEHLRFQSCNDTKTFNILIRGLCGVG 220

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM-VGKGMRP 195
           + ++A+ +   M   G  P+  TY  LIKG   + +     L  A +   ++    G  P
Sbjct: 221 KAEKAVELLGGMSGFGCLPDIVTYNTLIKGFCKSNE-----LKKANEMFDDVKSSSGCSP 275

Query: 196 NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           +  TYT++   + +A K+ EA  LL  M   G  P
Sbjct: 276 DVVTYTSMISGYCKAGKMQEASVLLDDMLRLGIYP 310


>gi|125587025|gb|EAZ27689.1| hypothetical protein OsJ_11637 [Oryza sativa Japonica Group]
          Length = 650

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 78/160 (48%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+F +M  +G++ NA+    + D L KD    +A +L  Q+  +G  P+ + + +++  
Sbjct: 389 EEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTH 448

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y   G  K+A  +   M A+G   +  TY  LI GL  A  G  ++   A K L  M  K
Sbjct: 449 YCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKA--GRTQV---ALKVLRGMRIK 503

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           GMRP    Y  V ++  R   + +A  L ++M   G  PD
Sbjct: 504 GMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPD 543



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 77/154 (50%), Gaps = 5/154 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +AL K G  H AL+LF ++K+ G  PD V +  +I+   S G+  +AL +   M ++G
Sbjct: 305 LINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTG 364

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
              +  TY  +I GL          + +A++   +M  +G+  NA T+  + +   + +K
Sbjct: 365 CPRSTITYNTIIDGLCKKMR-----IEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKK 419

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
           +D+A  L+ QM ++G  P+       L     QG
Sbjct: 420 IDDAFELINQMISEGLQPNNITYNSILTHYCKQG 453



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 6/147 (4%)

Query: 95  DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           + L K+G   EA  +  Q+ D+G +PD+     +I A  +  + +EAL +  ++   GV+
Sbjct: 237 NCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVS 296

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
           P+ YT+ +LI  L    D +      A +   EM   G  P+  TY  + +      K+ 
Sbjct: 297 PDVYTFNILINALCKVGDPHL-----ALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLG 351

Query: 215 EARGLLQQMKAKGFVPDEKAVKEALID 241
           +A  LL+ M++ G  P        +ID
Sbjct: 352 KALDLLKDMESTG-CPRSTITYNTIID 377



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 80/191 (41%), Gaps = 33/191 (17%)

Query: 74  LQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           L+ ++ +M   G+  + V    +  AL +      A+ +  ++  +G  PD    T +++
Sbjct: 73  LESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQ 132

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA--------------AAADG--- 173
            +   G  + ALRV  RML  G +    T  VLI G                  ADG   
Sbjct: 133 GFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEP 192

Query: 174 -----NAKI--------LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
                N  +        +G A K +  MV +G  P+  TY  V     +  +++EA+G+L
Sbjct: 193 DQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGIL 252

Query: 221 QQMKAKGFVPD 231
            QM  +G +PD
Sbjct: 253 NQMVDRGCLPD 263



 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 73/168 (43%), Gaps = 8/168 (4%)

Query: 75  QEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           QEI      + +T N     + L ++     AL++   +  +GH PDV  +  V+     
Sbjct: 184 QEIADGFEPDQITYNT--FVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCK 241

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            GQ +EA  +  +M+  G  P+  T+  LI   AA   GN   L +A     ++  KG+ 
Sbjct: 242 NGQLEEAKGILNQMVDRGCLPDITTFNTLI---AALCTGNR--LEEALDLARQVTVKGVS 296

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDK 242
           P+  T+  +  A  +      A  L ++MK  G  PDE      LID 
Sbjct: 297 PDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDE-VTYNTLIDN 343



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 59/139 (42%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +   K G   +AL    Q    G  PD + +   +           AL+V   M+  G
Sbjct: 165 LINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEG 224

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+ +TY +++  L          L +A+  L +MV +G  P+  T+  +  A     +
Sbjct: 225 HDPDVFTYNIVVNCLCKNGQ-----LEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNR 279

Query: 213 VDEARGLLQQMKAKGFVPD 231
           ++EA  L +Q+  KG  PD
Sbjct: 280 LEEALDLARQVTVKGVSPD 298



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 62/124 (50%), Gaps = 5/124 (4%)

Query: 109 LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
           +++++  +G  PDVV    +++A   A Q + A+ +   M + GVAP+  T+  L++G  
Sbjct: 76  VYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFV 135

Query: 169 AAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
                 A +   A+  ++EM   G      T   +   + +  +V++A G +QQ  A GF
Sbjct: 136 EEGSIEAALRVKAR--MLEM---GCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGF 190

Query: 229 VPDE 232
            PD+
Sbjct: 191 EPDQ 194



 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 7/142 (4%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D +   +I   M   G   + V    + + L K G T  AL++   ++ KG  P   A+ 
Sbjct: 454 DIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYN 513

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
            V+++       ++AL +F  M   G  P+A TY ++ +GL     G  K   +A  +++
Sbjct: 514 PVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGG-GPIK---EAFDFML 569

Query: 187 EMVGKGMRPNAGTYTAVFEAFV 208
           EMV KG  P   ++  + E  +
Sbjct: 570 EMVDKGFIPEFSSFRMLAEGLL 591


>gi|115482764|ref|NP_001064975.1| Os10g0499500 [Oryza sativa Japonica Group]
 gi|22165074|gb|AAM93691.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|31432889|gb|AAP54465.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639584|dbj|BAF26889.1| Os10g0499500 [Oryza sativa Japonica Group]
 gi|125575293|gb|EAZ16577.1| hypothetical protein OsJ_32049 [Oryza sativa Japonica Group]
 gi|215694503|dbj|BAG89496.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215697419|dbj|BAG91413.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|295901486|dbj|BAJ07249.1| pentatricopeptide repeat-containing protein [Oryza sativa Japonica
           Group]
 gi|295901490|dbj|BAJ07251.1| pentatricopeptide repeat-containing protein [Oryza sativa Japonica
           Group]
          Length = 506

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 10/161 (6%)

Query: 76  EIFHKMRTEG--LTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           E+ H M  +G     N V    + D L K G   +A   + ++ D+  +P+VV ++++I 
Sbjct: 182 ELLHMMADDGGGCLPNVVSYSTVIDGLLKGGDPDKAYATYREMLDRRILPNVVIYSSIIA 241

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
           A        +A+ V  RM+ +GV PN +TY  L+ G  ++       L +A K+L +M  
Sbjct: 242 ALCKGQAMDKAMEVHDRMVKNGVTPNCFTYTSLVHGFCSSGQ-----LTEAIKFLEKMCS 296

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            G+ PN  TY++  +   +  +  EAR +   M  +G  PD
Sbjct: 297 NGVEPNVVTYSSFMDYLCKNGRCTEARKIFDSMVKRGLKPD 337



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 77/159 (48%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +   KM + G+  N V      D L K+G   EA ++F  +  +G  PD+  +++++  Y
Sbjct: 289 KFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARKIFDSMVKRGLKPDITTYSSLLHGY 348

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           A  G   E   +F  M+ S + P+ Y +  LI   A+A  G      +A     +M  +G
Sbjct: 349 AIEGALVEMHGLFDLMVQSDMQPDHYVFNTLI--YASAKQGKVD---EAMLVFSKMRQQG 403

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           ++PN  TY+ +   + +  +++ A  L Q+M + G  P+
Sbjct: 404 LKPNCVTYSTLINGYCKITRMENALALFQEMVSNGVSPN 442



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 79/180 (43%), Gaps = 8/180 (4%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           DP      + +M    +  N V    +  AL K     +A+++  ++   G  P+   +T
Sbjct: 213 DPDKAYATYREMLDRRILPNVVIYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPNCFTYT 272

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
           +++  + S+GQ  EA++   +M ++GV PN  TY+  +  L      N +   +A+K   
Sbjct: 273 SLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCK----NGRCT-EARKIFD 327

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
            MV +G++P+  TY+++   +     + E  GL   M      PD       +     QG
Sbjct: 328 SMVKRGLKPDITTYSSLLHGYAIEGALVEMHGLFDLMVQSDMQPDHYVFNTLIYASAKQG 387



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 71/159 (44%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+  +M   G+T N      +       G   EA++   ++   G  P+VV +++ ++  
Sbjct: 254 EVHDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYL 313

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+  EA ++F  M+  G+ P+  TY+ L+ G A         L +       MV   
Sbjct: 314 CKNGRCTEARKIFDSMVKRGLKPDITTYSSLLHGYAIEG-----ALVEMHGLFDLMVQSD 368

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           M+P+   +  +  A  +  KVDEA  +  +M+ +G  P+
Sbjct: 369 MQPDHYVFNTLIYASAKQGKVDEAMLVFSKMRQQGLKPN 407



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 57/98 (58%), Gaps = 6/98 (6%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
           A +K G   EA+ +F++++ +G  P+ V ++ +I  Y    + + AL +F  M+++GV+P
Sbjct: 382 ASAKQGKVDEAMLVFSKMRQQGLKPNCVTYSTLINGYCKITRMENALALFQEMVSNGVSP 441

Query: 156 NAYTYAVLIKGL------AAAADGNAKILGDAQKYLME 187
           N  TY ++++GL      A A +   +I+   +K L+E
Sbjct: 442 NFITYNIMLQGLFRTGRTATAKEFYVQIIKSGKKDLIE 479



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/142 (23%), Positives = 65/142 (45%), Gaps = 8/142 (5%)

Query: 93  MFDALSKDGLTHEALQLFAQ-IKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRML-- 149
           +   L  D  T +A+ +  + + +   +P+V +HT +++      + +EAL +   M   
Sbjct: 131 LLKGLCADKRTDDAMDIVLRGMTELSCVPNVFSHTIILKGLCHENRSQEALELLHMMADD 190

Query: 150 ASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
             G  PN  +Y+ +I GL    D +      A     EM+ + + PN   Y+++  A  +
Sbjct: 191 GGGCLPNVVSYSTVIDGLLKGGDPDK-----AYATYREMLDRRILPNVVIYSSIIAALCK 245

Query: 210 AQKVDEARGLLQQMKAKGFVPD 231
            Q +D+A  +  +M   G  P+
Sbjct: 246 GQAMDKAMEVHDRMVKNGVTPN 267


>gi|147825385|emb|CAN75494.1| hypothetical protein VITISV_030525 [Vitis vinifera]
          Length = 821

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 80/158 (50%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNN---AVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +MR+ GL  +      +  A  ++GL  EA + FA++K +G++     + ++++ + 
Sbjct: 267 LLDEMRSNGLEFDEFTCSTVISACGREGLLDEARKFFARLKSEGYVAGTFTYNSLLQVFG 326

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG   EAL +   M  +   P+  TY  L+     AA   A    +   ++  M+ KG+
Sbjct: 327 KAGIYSEALSILKEMEKNNCPPDLVTYNELV-----AAYVRAGFHEEGADFIDTMIRKGI 381

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            PNA TYT V  A+ +A K D+A    +QMK  G VP+
Sbjct: 382 MPNAITYTTVINAYGKAGKEDKALSFFRQMKESGCVPN 419



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 81/186 (43%), Gaps = 12/186 (6%)

Query: 75  QEIFHKMRTEG-----LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           ++ F ++++EG      T N+  +     K G+  EAL +  +++     PD+V +  ++
Sbjct: 300 RKFFARLKSEGYVAGTFTYNS--LLQVFGKAGIYSEALSILKEMEKNNCPPDLVTYNELV 357

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
            AY  AG  +E       M+  G+ PNA TY  +I      A G A     A  +  +M 
Sbjct: 358 AAYVRAGFHEEGADFIDTMIRKGIMPNAITYTTVIN-----AYGKAGKEDKALSFFRQMK 412

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRG 249
             G  PN  TY A+     +  +++E   +L  M++ G  P+       L     +G   
Sbjct: 413 ESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNSVTWNTMLAMCGNKGMHK 472

Query: 250 VINILF 255
            +N +F
Sbjct: 473 YVNRVF 478



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 71/181 (39%), Gaps = 9/181 (4%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
            F +M+  G   N      +   L K     E + +   ++  G  P+ V    ++    
Sbjct: 407 FFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNSVTWNTMLAMCG 466

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
           + G  K   RVF  M + G  PN  T+  LI      A G      D  K   EM+  G 
Sbjct: 467 NKGMHKYVNRVFREMKSCGFEPNRDTFNALI-----GAYGRCGSQIDVVKMYEEMIKAGF 521

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL-IDKRGQGFRGVIN 252
            P   TY A+  A  R    + A  ++  MK+KGF P+E +    L    +G   RG+  
Sbjct: 522 TPCVTTYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLNCYAKGGNGRGIEK 581

Query: 253 I 253
           I
Sbjct: 582 I 582



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 74/149 (49%), Gaps = 5/149 (3%)

Query: 82  RTEGLTNNAVK-MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140
           R E + N  V+ M   L ++     AL+L  +I  + +  DV A T ++ AY+  G+ + 
Sbjct: 168 RNEKIDNQLVELMVRILGRESQHSVALRLLDEISVEEYSLDVRAWTTILHAYSRIGKYER 227

Query: 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTY 200
           A+ +F +M  +G++P   TY V++           KILG     L EM   G+  +  T 
Sbjct: 228 AITMFEKMRKTGLSPTLVTYNVMLDVYGKMGRSWNKILG----LLDEMRSNGLEFDEFTC 283

Query: 201 TAVFEAFVRAQKVDEARGLLQQMKAKGFV 229
           + V  A  R   +DEAR    ++K++G+V
Sbjct: 284 STVISACGREGLLDEARKFFARLKSEGYV 312



 Score = 63.5 bits (153), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 35/152 (23%), Positives = 67/152 (44%), Gaps = 8/152 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            E+   +R  GL  + V    + D  ++ G   +  ++   I+  G  PD+V++  VI+ 
Sbjct: 650 HEMLRLIRESGLQPDLVTYNSLMDMYARGGECWKGEEILKGIQKSGGKPDLVSYNTVIKG 709

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +   G  +EA+R    M  SG+ P   TY   + G +        +  + ++ +  M+  
Sbjct: 710 FCRQGLMQEAIRTLSEMTISGIRPCIVTYNTFVAGYSGKG-----MFSEVEEVISYMIQH 764

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
             RPN  TY  V + + + +K  EA   +  +
Sbjct: 765 DCRPNELTYKIVVDGYCKGKKYKEAMDFVSNI 796



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 63/150 (42%), Gaps = 6/150 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
           A  + G   E       +  KG MP+ + +T VI AY  AG+  +AL  F +M  SG  P
Sbjct: 359 AYVRAGFHEEGADFIDTMIRKGIMPNAITYTTVINAYGKAGKEDKALSFFRQMKESGCVP 418

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           N  TY  ++  L     G    L +    L +M   G  PN+ T+  +            
Sbjct: 419 NVCTYNAILGML-----GKKSRLEEMIDMLCDMRSNGCAPNSVTWNTMLAMCGNKGMHKY 473

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
              + ++MK+ GF P+      ALI   G+
Sbjct: 474 VNRVFREMKSCGFEPNRDTFN-ALIGAYGR 502



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/154 (22%), Positives = 66/154 (42%), Gaps = 6/154 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M    +K+ +   A ++   I++ G  PD+V + ++++ YA  G+  +   +   +  SG
Sbjct: 636 MLSIFAKNKMYDRAHEMLRLIRESGLQPDLVTYNSLMDMYARGGECWKGEEILKGIQKSG 695

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  +Y  +IKG          ++ +A + L EM   G+RP   TY      +     
Sbjct: 696 GKPDLVSYNTVIKGFCRQG-----LMQEAIRTLSEMTISGIRPCIVTYNTFVAGYSGKGM 750

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
             E   ++  M      P+E   K  ++D   +G
Sbjct: 751 FSEVEEVISYMIQHDCRPNELTYK-IVVDGYCKG 783



 Score = 39.7 bits (91), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 9/123 (7%)

Query: 110 FAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169
           F +    G+ PD+V   +++  +A       A  +   +  SG+ P+  TY  L+   A 
Sbjct: 618 FQEFCKHGYKPDLVLFNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLVTYNSLMDMYAR 677

Query: 170 AADG--NAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
             +     +IL   QK        G +P+  +Y  V + F R   + EA   L +M   G
Sbjct: 678 GGECWKGEEILKGIQK-------SGGKPDLVSYNTVIKGFCRQGLMQEAIRTLSEMTISG 730

Query: 228 FVP 230
             P
Sbjct: 731 IRP 733


>gi|225445998|ref|XP_002267263.1| PREDICTED: pentatricopeptide repeat-containing protein At2g18940
           [Vitis vinifera]
 gi|297735424|emb|CBI17864.3| unnamed protein product [Vitis vinifera]
          Length = 821

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 80/158 (50%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNN---AVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +MR+ GL  +      +  A  ++GL  EA + FA++K +G++     + ++++ + 
Sbjct: 267 LLDEMRSNGLEFDEFTCSTVISACGREGLLDEARKFFARLKSEGYVAGTFTYNSLLQVFG 326

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG   EAL +   M  +   P+  TY  L+     AA   A    +   ++  M+ KG+
Sbjct: 327 KAGIYSEALSILKEMEKNNCPPDLVTYNELV-----AAYVRAGFHEEGADFIDTMIRKGI 381

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            PNA TYT V  A+ +A K D+A    +QMK  G VP+
Sbjct: 382 MPNAITYTTVINAYGKAGKEDKALSFFRQMKESGCVPN 419



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 81/186 (43%), Gaps = 12/186 (6%)

Query: 75  QEIFHKMRTEG-----LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           ++ F ++++EG      T N+  +     K G+  EAL +  +++     PD+V +  ++
Sbjct: 300 RKFFARLKSEGYVAGTFTYNS--LLQVFGKAGIYSEALSILKEMEKNNCPPDLVTYNELV 357

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
            AY  AG  +E       M+  G+ PNA TY  +I      A G A     A  +  +M 
Sbjct: 358 AAYVRAGFHEEGADFIDTMIRKGIMPNAITYTTVIN-----AYGKAGKEDKALSFFRQMK 412

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRG 249
             G  PN  TY A+     +  +++E   +L  M++ G  P+       L     +G   
Sbjct: 413 ESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNSVTWNTMLAMCGNKGMHK 472

Query: 250 VINILF 255
            +N +F
Sbjct: 473 YVNRVF 478



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 71/181 (39%), Gaps = 9/181 (4%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
            F +M+  G   N      +   L K     E + +   ++  G  P+ V    ++    
Sbjct: 407 FFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSNGCAPNSVTWNTMLAMCG 466

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
           + G  K   RVF  M + G  PN  T+  LI      A G      D  K   EM+  G 
Sbjct: 467 NKGMHKYVNRVFREMKSCGFEPNRDTFNALI-----GAYGRCGSQIDVVKMYEEMIKAGF 521

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL-IDKRGQGFRGVIN 252
            P   TY A+  A  R    + A  ++  MK+KGF P+E +    L    +G   RG+  
Sbjct: 522 TPCVTTYNALLNALARRGDWEAAESVILDMKSKGFKPNETSYSLMLNCYAKGGNGRGIEK 581

Query: 253 I 253
           I
Sbjct: 582 I 582



 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 74/149 (49%), Gaps = 5/149 (3%)

Query: 82  RTEGLTNNAVK-MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140
           R E + N  V+ M   L ++     AL+L  +I  + +  DV A T ++ AY+  G+ + 
Sbjct: 168 RNEKIDNQLVELMVRILGRESQHSVALRLLDEISVEEYSLDVRAWTTILHAYSRIGKYER 227

Query: 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTY 200
           A+ +F +M  +G++P   TY V++           KILG     L EM   G+  +  T 
Sbjct: 228 AITMFEKMRKTGLSPTLVTYNVMLDVYGKMGRSWNKILG----LLDEMRSNGLEFDEFTC 283

Query: 201 TAVFEAFVRAQKVDEARGLLQQMKAKGFV 229
           + V  A  R   +DEAR    ++K++G+V
Sbjct: 284 STVISACGREGLLDEARKFFARLKSEGYV 312



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 65/145 (44%), Gaps = 8/145 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            E+   +R  GL  + V    + D  ++ G   +  ++   I+  G  PD+V++  VI+ 
Sbjct: 650 HEMLRLIRESGLQPDLVTYNSLMDMYARGGECWKGEEILKGIQKSGGKPDLVSYNTVIKG 709

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +   G  +EA+R    M  SG+ P   TY   + G +        +  + ++ +  M+  
Sbjct: 710 FCRQGLMQEAIRTLSEMTISGIRPCIVTYNTFVAGYSGKG-----MFSEVEEVISYMIQH 764

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEA 216
             RPN  TY  V + + + +K  EA
Sbjct: 765 DCRPNELTYKIVVDGYCKGKKYKEA 789



 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 63/150 (42%), Gaps = 6/150 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
           A  + G   E       +  KG MP+ + +T VI AY  AG+  +AL  F +M  SG  P
Sbjct: 359 AYVRAGFHEEGADFIDTMIRKGIMPNAITYTTVINAYGKAGKEDKALSFFRQMKESGCVP 418

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           N  TY  ++  L     G    L +    L +M   G  PN+ T+  +            
Sbjct: 419 NVCTYNAILGML-----GKKSRLEEMIDMLCDMRSNGCAPNSVTWNTMLAMCGNKGMHKY 473

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
              + ++MK+ GF P+      ALI   G+
Sbjct: 474 VNRVFREMKSCGFEPNRDTFN-ALIGAYGR 502



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/154 (22%), Positives = 66/154 (42%), Gaps = 6/154 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M    +K+ +   A ++   I++ G  PD+V + ++++ YA  G+  +   +   +  SG
Sbjct: 636 MLSIFAKNKMYDRAHEMLRLIRESGLQPDLVTYNSLMDMYARGGECWKGEEILKGIQKSG 695

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  +Y  +IKG          ++ +A + L EM   G+RP   TY      +     
Sbjct: 696 GKPDLVSYNTVIKGFCRQG-----LMQEAIRTLSEMTISGIRPCIVTYNTFVAGYSGKGM 750

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
             E   ++  M      P+E   K  ++D   +G
Sbjct: 751 FSEVEEVISYMIQHDCRPNELTYK-IVVDGYCKG 783



 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 9/123 (7%)

Query: 110 FAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169
           F +    G+ PD+V   +++  +A       A  +   +  SG+ P+  TY  L+   A 
Sbjct: 618 FQEFCKHGYKPDLVLFNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLVTYNSLMDMYAR 677

Query: 170 AADG--NAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
             +     +IL   QK        G +P+  +Y  V + F R   + EA   L +M   G
Sbjct: 678 GGECWKGEEILKGIQK-------SGGKPDLVSYNTVIKGFCRQGLMQEAIRTLSEMTISG 730

Query: 228 FVP 230
             P
Sbjct: 731 IRP 733


>gi|225189439|emb|CAR70003.1| pentatricopeptide repeat(PPR)-containing protein At1g12700
           [Arabidopsis thaliana]
          Length = 602

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 8/165 (4%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+F +M + G+  + +    + D L  +G   +AL++F  ++       +V +T +IE 
Sbjct: 423 EELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEG 482

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G+ ++A  +F  +   GV PN  TY V+I GL          L +A   L +M   
Sbjct: 483 MCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGS-----LSEANILLRKMEED 537

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK 236
           G  PN  TY  +  A +R   +  +  L+++MK+ GF  D  ++K
Sbjct: 538 GNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIK 582



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 69/139 (49%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   K+G   EA +L+ ++  +G  P+++ +  +++ Y    +  EA  +   M+ + 
Sbjct: 304 LLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNK 363

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            +P+  T+  LIKG         K + D  K    +  +G+  NA TY+ + + F ++ K
Sbjct: 364 CSPDIVTFTSLIKGYCM-----VKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGK 418

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +  A  L Q+M + G +PD
Sbjct: 419 IKLAEELFQEMVSHGVLPD 437



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D+L +DG    A+ LF +++ KG    VV + +++     AG+  +   +   M++  
Sbjct: 234 IIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSRE 293

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN  T+ VL+             L +A +   EM+ +G+ PN  TY  + + +    +
Sbjct: 294 IVPNVITFNVLLDVFVKEGK-----LQEANELYKEMITRGISPNIITYNTLMDGYCMQNR 348

Query: 213 VDEARGLLQQMKAKGFVPD 231
           + EA  +L  M      PD
Sbjct: 349 LSEANNMLDLMVRNKCSPD 367



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 67/139 (48%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + + + G T  A  +  +++++    DV  ++ +I++    G    A+ +F  M   G
Sbjct: 199 IVNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKG 258

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +  +  TY  L++GL  A   N     D    L +MV + + PN  T+  + + FV+  K
Sbjct: 259 IKSSVVTYNSLVRGLCKAGKWN-----DGALLLKDMVSREIVPNVITFNVLLDVFVKEGK 313

Query: 213 VDEARGLLQQMKAKGFVPD 231
           + EA  L ++M  +G  P+
Sbjct: 314 LQEANELYKEMITRGISPN 332



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/136 (21%), Positives = 61/136 (44%), Gaps = 5/136 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M +   +   T  A  +  ++   G+ PD      +I      G+  +A+ +  RM+ +G
Sbjct: 129 MINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLEGKVSKAVVLVDRMVENG 188

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  TY  ++ G+  + D +      A   L +M  + ++ +  TY+ + ++  R   
Sbjct: 189 CQPDMVTYNSIVNGICRSGDTSL-----AFDMLRKMEERNVKADVFTYSTIIDSLCRDGC 243

Query: 213 VDEARGLLQQMKAKGF 228
           +D A  L ++M+ KG 
Sbjct: 244 IDAAISLFKEMETKGI 259



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/139 (22%), Positives = 64/139 (46%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L  +G   +A+ L  ++ + G  PD+V + +++     +G    A  +  +M    
Sbjct: 164 LINGLCLEGKVSKAVVLVDRMVENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERN 223

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V  + +TY+ +I  L      +A I         EM  KG++ +  TY ++     +A K
Sbjct: 224 VKADVFTYSTIIDSLCRDGCIDAAI-----SLFKEMETKGIKSSVVTYNSLVRGLCKAGK 278

Query: 213 VDEARGLLQQMKAKGFVPD 231
            ++   LL+ M ++  VP+
Sbjct: 279 WNDGALLLKDMVSREIVPN 297


>gi|410109879|gb|AFV61019.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           macrostachya]
          Length = 414

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 111/237 (46%), Gaps = 15/237 (6%)

Query: 2   AATAILRWLLHSPSPKRS-LRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPF 60
           +A+A+   +L +   +RS + + +  + A L+      + +  +  +  + K   P+D  
Sbjct: 36  SASAVFAAILETKGTQRSDIYVFSGLITAYLESGFLRDAIECYR--LTREHKFWVPFDTC 93

Query: 61  KKVVDEEPTDPRNLQEI--FHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIK 114
           +KV+ E     +  + +  F++   E     ++  F+ L     K+G    A  +F  I 
Sbjct: 94  RKVL-EHMMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKEGDIRVAQSVFNAIT 152

Query: 115 DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174
             G  P VV+   ++  Y   G   E  R+   M ASGV P+ YTY+VLI GL   +   
Sbjct: 153 KWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESK-- 210

Query: 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              + DA +   EM+ KG+ PN  T+T + +   ++ +VD A  + +QM ++   PD
Sbjct: 211 ---MDDANELFDEMLDKGLVPNGVTFTTLIDGHCKSGRVDLAMEIYKQMLSQSLSPD 264



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 82/201 (40%), Gaps = 35/201 (17%)

Query: 63  VVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM 119
           +  E   D  N  E+F +M  +GL  N V    + D   K G    A++++ Q+  +   
Sbjct: 205 LCKESKMDDAN--ELFDEMLDKGLVPNGVTFTTLIDGHCKSGRVDLAMEIYKQMLSQSLS 262

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD------- 172
           PD++ +  +I      G  K+A  +   M   G+ P+  TY  LI G     D       
Sbjct: 263 PDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEH 322

Query: 173 ---------------GNAKILG--------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
                            A I G        DA+K L EM+  G++P+ GTYT +   F +
Sbjct: 323 RKRMIQENIRLDDVAYTALISGLCQEGRYLDAEKVLREMLSAGLKPDTGTYTMIINEFCK 382

Query: 210 AQKVDEARGLLQQMKAKGFVP 230
              V     LL++M+  G VP
Sbjct: 383 KGDVWTGSKLLKEMQRDGHVP 403



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 66/124 (53%), Gaps = 5/124 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K+    +A +LF ++ DKG +P+ V  T +I+ +  +G+   A+ ++ +ML+  
Sbjct: 201 LINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKSGRVDLAMEIYKQMLSQS 260

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           ++P+  TY  LI GL    D     L  A   + EM  KG++P+  TYT + +   +   
Sbjct: 261 LSPDLITYNTLIYGLCKKGD-----LKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGD 315

Query: 213 VDEA 216
           ++ A
Sbjct: 316 LETA 319


>gi|255569678|ref|XP_002525804.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534891|gb|EEF36578.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 135

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 71/125 (56%), Gaps = 5/125 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D+L KD    +AL+LF ++K +G +PDVV +T++I A  ++ QG+EA  +F  ML   
Sbjct: 16  VIDSLCKDNFVSKALELFLKMKRQGILPDVVTYTSLIHALCNSCQGREASVLFNEMLDEN 75

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN  T++VL  GL          + +A+  +   + +G+ P+  TY ++ + +    +
Sbjct: 76  IIPNVVTFSVLADGLFKEGK-----VSEAEGIVEVTIERGIEPDVVTYNSLMDRYCLHNQ 130

Query: 213 VDEAR 217
           ++ AR
Sbjct: 131 MNRAR 135



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 5/112 (4%)

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
           PD V ++ VI++        +AL +F++M   G+ P+  TY  LI  L  +  G      
Sbjct: 8   PDAVTYSTVIDSLCKDNFVSKALELFLKMKRQGILPDVVTYTSLIHALCNSCQGR----- 62

Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +A     EM+ + + PN  T++ + +   +  KV EA G+++    +G  PD
Sbjct: 63  EASVLFNEMLDENIIPNVVTFSVLADGLFKEGKVSEAEGIVEVTIERGIEPD 114


>gi|326510773|dbj|BAJ91734.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 711

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 8/162 (4%)

Query: 73  NLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           N + +  +M   G+  N V    M    S  G   EA ++F ++  +G +PD+V+  + +
Sbjct: 169 NAELLLRQMVDNGVPPNKVTYTSMIHGYSTLGRWEEATKMFREMTGRGLIPDIVSWNSFM 228

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
           ++    G+ KEA  +F  M A G  PN  TY +L+ G A           D   +   M 
Sbjct: 229 DSLCKHGRSKEAAEIFYSMAAKGHRPNIVTYGILLHGYATEG-----CFADMMSFFNTMK 283

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G G+  N   +T + +A+ +   +DEA  +L +M+ +G  PD
Sbjct: 284 GDGIVANCLVFTILIDAYAKRGMMDEAMLILSEMQGQGLSPD 325



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 104/229 (45%), Gaps = 17/229 (7%)

Query: 24  NTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKKVVDEEPTDPR--NLQEIFHKM 81
           N+ +NA  +     +++   ++ V+  + +PP    +  ++    T  R     ++F +M
Sbjct: 155 NSIINALCKARAVDNAELLLRQMVD--NGVPPNKVTYTSMIHGYSTLGRWEEATKMFREM 212

Query: 82  RTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQG 138
              GL  + V      D+L K G + EA ++F  +  KGH P++V +  ++  YA+ G  
Sbjct: 213 TGRGLIPDIVSWNSFMDSLCKHGRSKEAAEIFYSMAAKGHRPNIVTYGILLHGYATEGCF 272

Query: 139 KEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAG 198
            + +  F  M   G+  N   + +LI   A        ++ +A   L EM G+G+ P+  
Sbjct: 273 ADMMSFFNTMKGDGIVANCLVFTILIDAYAKRG-----MMDEAMLILSEMQGQGLSPDVF 327

Query: 199 TYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGF 247
           TY+ +  A  R  ++ +A     QM   G  P+   V  +LI    QGF
Sbjct: 328 TYSTLISALCRMGRLADAVDKFNQMIGTGVQPN-TVVYHSLI----QGF 371



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 82/159 (51%), Gaps = 9/159 (5%)

Query: 73  NLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           ++   F+ M+ +G+  N +    + DA +K G+  EA+ + ++++ +G  PDV  ++ +I
Sbjct: 274 DMMSFFNTMKGDGIVANCLVFTILIDAYAKRGMMDEAMLILSEMQGQGLSPDVFTYSTLI 333

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
            A    G+  +A+  F +M+ +GV PN   Y  LI+G     D     L  A++ + EM+
Sbjct: 334 SALCRMGRLADAVDKFNQMIGTGVQPNTVVYHSLIQGFCTHGD-----LVKAKELVYEMM 388

Query: 190 GKGM-RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
             G+ RPN   + ++  +  +  +V +A  +   +K  G
Sbjct: 389 NNGIPRPNIAFFNSIVHSICKEGRVMDAHHIFDLVKDIG 427



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 8/155 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           EIF+ M  +G   N V    +    + +G   + +  F  +K  G + + +  T +I+AY
Sbjct: 242 EIFYSMAAKGHRPNIVTYGILLHGYATEGCFADMMSFFNTMKGDGIVANCLVFTILIDAY 301

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           A  G   EA+ +   M   G++P+ +TY+ LI  L          L DA     +M+G G
Sbjct: 302 AKRGMMDEAMLILSEMQGQGLSPDVFTYSTLISALCRMGR-----LADAVDKFNQMIGTG 356

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
           ++PN   Y ++ + F     + +A+ L+ +M   G
Sbjct: 357 VQPNTVVYHSLIQGFCTHGDLVKAKELVYEMMNNG 391



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 73/157 (46%), Gaps = 9/157 (5%)

Query: 75  QEIFHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           +E+ ++M   G+    +  F+++     K+G   +A  +F  +KD G   D++    +I+
Sbjct: 381 KELVYEMMNNGIPRPNIAFFNSIVHSICKEGRVMDAHHIFDLVKDIGERSDIIMFNTLID 440

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
            Y   G+  +A  V   M+++G+ P+ +TY  L+ G   +       + D      EM  
Sbjct: 441 GYCLVGEMGKAFSVLDAMISAGIGPDTFTYNTLVNGYFKSGR-----IDDGLNLFREMSD 495

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
           K ++P   TY  + +   RA +   A+ +L +M   G
Sbjct: 496 KKIKPTTVTYNIILDGLFRAGRTVAAQKMLHEMIGCG 532



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/225 (23%), Positives = 98/225 (43%), Gaps = 15/225 (6%)

Query: 17  KRSLRITNTRVNATLQR-SLSSSSDQPTKKYVNTKSKLPPPYDPFK-KVVDEEPTDPRNL 74
           +  L+   T  N  L+    +  +D   K  +   ++L    D F   +V +   D    
Sbjct: 36  RTGLKADKTAANTVLKCLCCTKRTDDAVKVLLRRMTELGCVPDAFSYAIVLKRLCDDNRS 95

Query: 75  QEIFHKMRT----EGLTNNAVKMFDALS----KDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           Q+    +R     EG+ +  V  ++ +     K+G   +A  L+ ++  +G +PDVV H 
Sbjct: 96  QQALDLLRMMAKEEGVCSPDVVTYNTVIHGFFKEGKIGKACNLYHEMMQQGFVPDVVTHN 155

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
           ++I A   A     A  +  +M+ +GV PN  TY  +I G +           +A K   
Sbjct: 156 SIINALCKARAVDNAELLLRQMVDNGVPPNKVTYTSMIHGYSTLGRWE-----EATKMFR 210

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           EM G+G+ P+  ++ +  ++  +  +  EA  +   M AKG  P+
Sbjct: 211 EMTGRGLIPDIVSWNSFMDSLCKHGRSKEAAEIFYSMAAKGHRPN 255



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 66/135 (48%), Gaps = 10/135 (7%)

Query: 109 LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA--SGVA-PNAYTYAVLIK 165
           L  ++ + G +PD  ++  V++      + ++AL + +RM+A   GV  P+  TY  +I 
Sbjct: 66  LLRRMTELGCVPDAFSYAIVLKRLCDDNRSQQALDL-LRMMAKEEGVCSPDVVTYNTVIH 124

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G           +G A     EM+ +G  P+  T+ ++  A  +A+ VD A  LL+QM  
Sbjct: 125 GFFKEGK-----IGKACNLYHEMMQQGFVPDVVTHNSIINALCKARAVDNAELLLRQMVD 179

Query: 226 KGFVPDEKAVKEALI 240
            G VP  K    ++I
Sbjct: 180 NG-VPPNKVTYTSMI 193



 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/133 (21%), Positives = 57/133 (42%), Gaps = 5/133 (3%)

Query: 99  KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAY 158
           K G   + L LF ++ DK   P  V +  +++    AG+   A ++   M+  G   +  
Sbjct: 479 KSGRIDDGLNLFREMSDKKIKPTTVTYNIILDGLFRAGRTVAAQKMLHEMIGCGTTVSLP 538

Query: 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218
           TY +++KGL      +  I+        ++    ++ N  T   +  +    Q+ +EA+ 
Sbjct: 539 TYNIILKGLCRNNCTDEAIV-----MFQKLCTMNVKFNITTLNTMINSMYTVQRREEAKD 593

Query: 219 LLQQMKAKGFVPD 231
           L   +   G VP+
Sbjct: 594 LFSAISDSGLVPN 606



 Score = 42.0 bits (97), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 35/188 (18%), Positives = 75/188 (39%), Gaps = 34/188 (18%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           I  +M+ +GL+ +      +  AL + G   +A+  F Q+   G  P+ V + ++I+ + 
Sbjct: 313 ILSEMQGQGLSPDVFTYSTLISALCRMGRLADAVDKFNQMIGTGVQPNTVVYHSLIQGFC 372

Query: 134 SAGQGKEALRVFMRMLASGVA-PNAYTYAVLIKGLAAAA--------------------- 171
           + G   +A  +   M+ +G+  PN   +  ++  +                         
Sbjct: 373 THGDLVKAKELVYEMMNNGIPRPNIAFFNSIVHSICKEGRVMDAHHIFDLVKDIGERSDI 432

Query: 172 -------DGNAKI--LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
                  DG   +  +G A   L  M+  G+ P+  TY  +   + ++ ++D+   L ++
Sbjct: 433 IMFNTLIDGYCLVGEMGKAFSVLDAMISAGIGPDTFTYNTLVNGYFKSGRIDDGLNLFRE 492

Query: 223 MKAKGFVP 230
           M  K   P
Sbjct: 493 MSDKKIKP 500


>gi|242073534|ref|XP_002446703.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
 gi|241937886|gb|EES11031.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
          Length = 802

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 52/179 (29%), Positives = 90/179 (50%), Gaps = 15/179 (8%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M++ G+  +      + D+  K GL  +A   F +++  G   +VV +TA++ AY 
Sbjct: 310 LFQEMKSVGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSIGCSANVVTYTALLHAYL 369

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN------AKILGDAQKYLME 187
            A Q  +A  +F RM+ +G  PN  TY+ L+ GL  A +         K++G +     +
Sbjct: 370 KAKQLPQASDIFNRMIDAGCPPNTITYSALVDGLCKAGEIQKACEVYTKLIGTSDNVGSD 429

Query: 188 MVGKG-----MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
              +G     + PN  TY A+ +   +A KV +A+ LL  M + G  P+   + +ALID
Sbjct: 430 FYFEGKHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDAMLSNGCEPNH-IIYDALID 487



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 8/155 (5%)

Query: 73  NLQEIFHKMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           N QE+F +M   G     +    + DA+ KD     A+++ +Q+ +    P+VV +TA+I
Sbjct: 497 NAQEVFLRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTPNVVTYTAMI 556

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
           +     G+ ++AL++   M   G +PN  TY  LI GL  +   +  +     +  ++M 
Sbjct: 557 DGLCRIGECQKALKLLSMMEEKGCSPNVVTYTALIDGLGKSGKVDLSL-----QLFIQMS 611

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            KG  PN  TY  +      A  +DEA  LL +MK
Sbjct: 612 TKGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMK 646



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 49/158 (31%), Positives = 82/158 (51%), Gaps = 10/158 (6%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++  +M     T N V    M D L + G   +AL+L + +++KG  P+VV +TA+I+  
Sbjct: 535 KVLSQMVESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEEKGCSPNVVTYTALIDGL 594

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             +G+   +L++F++M   G APN  TY VLI    AA      +L +A   L EM    
Sbjct: 595 GKSGKVDLSLQLFIQMSTKGCAPNYVTYRVLINHCCAAG-----LLDEAHSLLSEMKQTY 649

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
                  Y +V + F  ++K   + GLL+++++ G VP
Sbjct: 650 WPKYLQGYCSVVQGF--SKKFIASLGLLEELESHGTVP 685



 Score = 73.9 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 48/160 (30%), Positives = 75/160 (46%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           QE+   M + G   N +    + D   K G    A ++F ++   G++P V  +T++I+A
Sbjct: 464 QELLDAMLSNGCEPNHIIYDALIDGFCKVGKIDNAQEVFLRMSKCGYLPTVHTYTSLIDA 523

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
                +   A++V  +M+ S   PN  TY  +I GL    +        A K L  M  K
Sbjct: 524 MFKDRRLDLAMKVLSQMVESSCTPNVVTYTAMIDGLCRIGECQ-----KALKLLSMMEEK 578

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G  PN  TYTA+ +   ++ KVD +  L  QM  KG  P+
Sbjct: 579 GCSPNVVTYTALIDGLGKSGKVDLSLQLFIQMSTKGCAPN 618



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 50/171 (29%), Positives = 75/171 (43%), Gaps = 9/171 (5%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F    T+ +  N V    + D L K     +A +L   +   G  P+ + + A+I+ +  
Sbjct: 432 FEGKHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDAMLSNGCEPNHIIYDALIDGFCK 491

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            G+   A  VF+RM   G  P  +TY  LI  +        + L  A K L +MV     
Sbjct: 492 VGKIDNAQEVFLRMSKCGYLPTVHTYTSLIDAMF-----KDRRLDLAMKVLSQMVESSCT 546

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
           PN  TYTA+ +   R  +  +A  LL  M+ KG  P+      ALID  G+
Sbjct: 547 PNVVTYTAMIDGLCRIGECQKALKLLSMMEEKGCSPN-VVTYTALIDGLGK 596



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 6/136 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A Q+   +  KG +PD   ++ VI     A + ++A  +F  M + GV P+ YTY +LI 
Sbjct: 272 AFQIIKVMMGKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVNPDVYTYTILID 331

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
               A      ++  A+ +  EM   G   N  TYTA+  A+++A+++ +A  +  +M  
Sbjct: 332 SFCKAG-----LIEQARSWFDEMRSIGCSANVVTYTALLHAYLKAKQLPQASDIFNRMID 386

Query: 226 KGFVPDEKAVKEALID 241
            G  P       AL+D
Sbjct: 387 AG-CPPNTITYSALVD 401



 Score = 46.6 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 46/192 (23%), Positives = 76/192 (39%), Gaps = 38/192 (19%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++   M  +G + N V    + D L K G    +LQLF Q+  KG  P+ V +  +I   
Sbjct: 570 KLLSMMEEKGCSPNVVTYTALIDGLGKSGKVDLSLQLFIQMSTKGCAPNYVTYRVLINHC 629

Query: 133 ASAGQGKEALRVFMRM-----------------------LAS----------GVAPNAYT 159
            +AG   EA  +   M                       +AS          G  P A  
Sbjct: 630 CAAGLLDEAHSLLSEMKQTYWPKYLQGYCSVVQGFSKKFIASLGLLEELESHGTVPIAPV 689

Query: 160 YAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGL 219
           Y +LI   + A  G  +   +  K +ME+       +   YT++ +A   A ++++A  L
Sbjct: 690 YGLLIDNFSKA--GRLEEALELHKEMMELSSSLNITSKDMYTSLIQALCLASQLEKAFEL 747

Query: 220 LQQMKAKGFVPD 231
             ++  KG VP+
Sbjct: 748 YSEITRKGVVPE 759



 Score = 44.7 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 8/135 (5%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
           AL K+G   +AL +   I+ +    D V  T +I     A    EA+    RM  +   P
Sbjct: 84  ALCKEGRWSDALVM---IEREDFKLDTVLCTQMISGLMEASLFDEAISFLHRMRCNSCIP 140

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           N  TY  L+ G         K LG  ++ +  M+ +G  PN   + ++  ++  A+    
Sbjct: 141 NVVTYRTLLTGFL-----KKKQLGWCKRIINMMMKEGCNPNPSLFNSLVHSYCNARDYPY 195

Query: 216 ARGLLQQMKAKGFVP 230
           A  LL++M   G  P
Sbjct: 196 AYKLLKRMADCGCPP 210



 Score = 38.9 bits (89), Expect = 2.2,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 10/121 (8%)

Query: 112 QIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA 171
           ++KD G+ P    + A+++  A+AGQ     RV   M  SG   + +T     + L    
Sbjct: 30  ELKDFGYRPSGATYNALVQVLATAGQMDMGFRVQKEMSESGFCMDKFTVGCFAQALCKEG 89

Query: 172 D-GNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
              +A ++ + + + ++ V           T +    + A   DEA   L +M+    +P
Sbjct: 90  RWSDALVMIEREDFKLDTV---------LCTQMISGLMEASLFDEAISFLHRMRCNSCIP 140

Query: 231 D 231
           +
Sbjct: 141 N 141



 Score = 38.9 bits (89), Expect = 2.4,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 3/78 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVA---HTAVIEAYASAGQGKEALRVFMRML 149
           + D  SK G   EAL+L  ++ +     ++ +   +T++I+A   A Q ++A  ++  + 
Sbjct: 693 LIDNFSKAGRLEEALELHKEMMELSSSLNITSKDMYTSLIQALCLASQLEKAFELYSEIT 752

Query: 150 ASGVAPNAYTYAVLIKGL 167
             GV P    +  LIKGL
Sbjct: 753 RKGVVPELSVFVCLIKGL 770


>gi|449438627|ref|XP_004137089.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g02860-like [Cucumis sativus]
          Length = 831

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 79/153 (51%), Gaps = 6/153 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +  +  +  L  EA ++F ++K  G  PD V + A+++ Y  + + +EA+ V   M ASG
Sbjct: 297 LISSCRRGSLYEEAAEVFEEMKAAGFSPDKVTYNALLDVYGKSRRPREAMEVLKEMEASG 356

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            AP+  TY  LI   A A DG   +L +A +   +MV KG++P+  TYT +   F +  K
Sbjct: 357 FAPSIVTYNSLIS--AYARDG---LLDEAMELKSQMVKKGIKPDVFTYTTLLSGFEKTGK 411

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
            D A  + ++M+  G  P+      ALI   G 
Sbjct: 412 DDYAMKVFEEMRVAGCQPN-ICTFNALIKMHGN 443



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 8/164 (4%)

Query: 71  PRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           PR   E+  +M   G   + V    +  A ++DGL  EA++L +Q+  KG  PDV  +T 
Sbjct: 342 PREAMEVLKEMEASGFAPSIVTYNSLISAYARDGLLDEAMELKSQMVKKGIKPDVFTYTT 401

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           ++  +   G+   A++VF  M  +G  PN  T+  LIK       GN     +  K   E
Sbjct: 402 LLSGFEKTGKDDYAMKVFEEMRVAGCQPNICTFNALIK-----MHGNRGNFVEMMKVFEE 456

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +      P+  T+  +   F +     E  G+ ++MK  GFVP+
Sbjct: 457 IKICECVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPE 500



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 80/164 (48%), Gaps = 6/164 (3%)

Query: 86  LTNNAVK-MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRV 144
           L+N+ V  +   L K+G    A  L   +++ G   D+ A+T++I AYAS G+ +EA+ V
Sbjct: 183 LSNSVVAVIISVLGKEGRASFAASLLHDLRNDGVHIDIYAYTSLITAYASNGRYREAVMV 242

Query: 145 FMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVF 204
           F ++   G  P   TY V++          +KI G        M   G+ P+  TY  + 
Sbjct: 243 FKKLEEEGCRPTLITYNVILNVYGKMGMPWSKIAGLVDS----MKSSGVAPDLYTYNTLI 298

Query: 205 EAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFR 248
            +  R    +EA  + ++MKA GF PD K    AL+D  G+  R
Sbjct: 299 SSCRRGSLYEEAAEVFEEMKAAGFSPD-KVTYNALLDVYGKSRR 341



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 74/156 (47%), Gaps = 14/156 (8%)

Query: 75  QEIFHKMRTEGLT------NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
            EI + ++  G T      N+ + M+   S+     ++  +  +I  KG  PD+++   V
Sbjct: 661 NEILNFIKDSGFTPSLTTYNSLMYMY---SRTEHFEKSEDILREIIAKGMKPDIISFNTV 717

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I AY   G+ KEA R+F  M   G+AP+  TY   I   A+ +     I  D  KY   M
Sbjct: 718 IFAYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASYASDSMFIEAI--DVVKY---M 772

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           +  G +PN  TY ++ + F +  + DEA   +  ++
Sbjct: 773 IKNGCKPNQNTYNSLIDWFCKLNRRDEASSFISNLR 808



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 76/172 (44%), Gaps = 21/172 (12%)

Query: 99  KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAY 158
           ++G+  E   +F ++K  G +P+      +I AY+  G   +A+ ++ RML +GV P+  
Sbjct: 478 QNGMDSEVSGVFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLS 537

Query: 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218
           TY  ++  LA        +   ++K L EM     +PN  TY ++  A+   ++V+    
Sbjct: 538 TYNAVLAALARGG-----LWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEVERMSA 592

Query: 219 LLQQMKAKGFVPDEKAVK----------------EALIDKRGQGFRGVINIL 254
           L +++ +    P    +K                 A ++ R QGF   I  L
Sbjct: 593 LAEEIYSGIIEPQAVLLKTLVLVYSKSDLLTETERAFLELREQGFSPDITTL 644



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 69/161 (42%), Gaps = 10/161 (6%)

Query: 76  EIFHKMRTEGLTNNAVKMFDALSK----DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           ++F +MR  G   N +  F+AL K     G   E +++F +IK    +PD+V    ++  
Sbjct: 417 KVFEEMRVAGCQPN-ICTFNALIKMHGNRGNFVEMMKVFEEIKICECVPDIVTWNTLLAV 475

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +   G   E   VF  M  +G  P   T+  LI     +A         A      M+  
Sbjct: 476 FGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLI-----SAYSRCGFFDQAMAIYRRMLDA 530

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           G+ P+  TY AV  A  R    +++  +L +MK     P+E
Sbjct: 531 GVTPDLSTYNAVLAALARGGLWEQSEKVLAEMKDGRCKPNE 571



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 3/96 (3%)

Query: 74  LQEIFHK-MRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           L+EI  K M+ + ++ N V    A  ++G   EA ++FA++KD G  PDV+ +   I +Y
Sbjct: 699 LREIIAKGMKPDIISFNTVIF--AYCRNGRMKEASRIFAEMKDFGLAPDVITYNTFIASY 756

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
           AS     EA+ V   M+ +G  PN  TY  LI    
Sbjct: 757 ASDSMFIEAIDVVKYMIKNGCKPNQNTYNSLIDWFC 792



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 61/134 (45%), Gaps = 5/134 (3%)

Query: 98  SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA 157
           SK  L  E  + F +++++G  PD+    A++  Y       +   +   +  SG  P+ 
Sbjct: 617 SKSDLLTETERAFLELREQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFIKDSGFTPSL 676

Query: 158 YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
            TY  L+   +       +    ++  L E++ KGM+P+  ++  V  A+ R  ++ EA 
Sbjct: 677 TTYNSLMYMYS-----RTEHFEKSEDILREIIAKGMKPDIISFNTVIFAYCRNGRMKEAS 731

Query: 218 GLLQQMKAKGFVPD 231
            +  +MK  G  PD
Sbjct: 732 RIFAEMKDFGLAPD 745



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/187 (19%), Positives = 73/187 (39%), Gaps = 33/187 (17%)

Query: 77  IFHKMRTEGLT---NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M+  G     +    +  A S+ G   +A+ ++ ++ D G  PD+  + AV+ A A
Sbjct: 488 VFKEMKRAGFVPERDTFNTLISAYSRCGFFDQAMAIYRRMLDAGVTPDLSTYNAVLAALA 547

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD--------------------- 172
             G  +++ +V   M      PN  TY  L+   A   +                     
Sbjct: 548 RGGLWEQSEKVLAEMKDGRCKPNELTYCSLLHAYANGKEVERMSALAEEIYSGIIEPQAV 607

Query: 173 ---------GNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
                      + +L + ++  +E+  +G  P+  T  A+   + R + V +   +L  +
Sbjct: 608 LLKTLVLVYSKSDLLTETERAFLELREQGFSPDITTLNAMVSIYGRRRMVSKTNEILNFI 667

Query: 224 KAKGFVP 230
           K  GF P
Sbjct: 668 KDSGFTP 674


>gi|297739257|emb|CBI28908.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 91/178 (51%), Gaps = 11/178 (6%)

Query: 55  PPYDPFKKVVDEEPTDPRNLQ--EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQL 109
           PP+  +  V+     D R ++   +F  M  +G   N      + DA  K+G  +EA+ L
Sbjct: 329 PPH-AYSLVIGGLCKDGRTVEGSSVFENMNKKGCKANVAIYTALIDAYGKNGNVNEAINL 387

Query: 110 FAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169
           F ++K +G  PD V +  ++     +G+  EA+  F     + VA NA  Y+ LI GL  
Sbjct: 388 FERMKGEGFEPDDVTYGVIVNGLCKSGRLDEAVEYFEFCKDNEVAVNAMFYSSLIDGL-- 445

Query: 170 AADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
              G A  + +A+K+  EMV +G   ++  Y A+ +A  ++ K++EA  L ++M+ +G
Sbjct: 446 ---GKAGRVDEAEKFFEEMVERGCPQDSYCYNALIDALAKSGKMEEALVLFKRMEKEG 500



 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 71/146 (48%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L KDG T E   +F  +  KG   +V  +TA+I+AY   G   EA+ +F RM   G  P
Sbjct: 339 GLCKDGRTVEGSSVFENMNKKGCKANVAIYTALIDAYGKNGNVNEAINLFERMKGEGFEP 398

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY V++ GL  +       L +A +Y        +  NA  Y+++ +   +A +VDE
Sbjct: 399 DDVTYGVIVNGLCKSGR-----LDEAVEYFEFCKDNEVAVNAMFYSSLIDGLGKAGRVDE 453

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A    ++M  +G  P +     ALID
Sbjct: 454 AEKFFEEMVERG-CPQDSYCYNALID 478



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E F   +   +  NA+    + D L K G   EA + F ++ ++G   D   + A+I+A 
Sbjct: 421 EYFEFCKDNEVAVNAMFYSSLIDGLGKAGRVDEAEKFFEEMVERGCPQDSYCYNALIDAL 480

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           A +G+ +EAL +F RM   G     YTY +LI GL            +A K    M+ KG
Sbjct: 481 AKSGKMEEALVLFKRMEKEGCDQTVYTYTILISGLFKEHRNE-----EALKLWDLMIDKG 535

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + P   ++ A+      + KV  A  +L ++   G +P+
Sbjct: 536 ITPTTASFRALSVGLCLSGKVARACKILDELAPMGVIPE 574



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 66/142 (46%), Gaps = 5/142 (3%)

Query: 91  VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           V + D LS          +F + K+KG +  V A  ++I ++ + G  +E L V+ RM  
Sbjct: 159 VSLIDVLSLSSDFDRVRCIFGEFKEKGFLMTVFAANSLIRSFGALGMVEELLWVWRRMKE 218

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
           SG+ P+ YT+  L+ GL      N+  +  A++    M    + P+  +Y  + + + +A
Sbjct: 219 SGIEPSLYTFNFLLNGLV-----NSMFIESAERVFEVMECGKIGPDVVSYNTMIKGYCKA 273

Query: 211 QKVDEARGLLQQMKAKGFVPDE 232
               +A      M+ +   PD+
Sbjct: 274 GNTKKAMEKFTDMEKRNLEPDK 295



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/194 (23%), Positives = 82/194 (42%), Gaps = 37/194 (19%)

Query: 74  LQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           L  ++ +M+  G+  +      + + L        A ++F  ++     PDVV++  +I+
Sbjct: 209 LLWVWRRMKESGIEPSLYTFNFLLNGLVNSMFIESAERVFEVMECGKIGPDVVSYNTMIK 268

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN---------------- 174
            Y  AG  K+A+  F  M    + P+  TY  LI+  A  ++GN                
Sbjct: 269 GYCKAGNTKKAMEKFTDMEKRNLEPDKITYLTLIQ--ACYSEGNFDSCLHLYQEMEERGL 326

Query: 175 -------AKILG---------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218
                  + ++G         +       M  KG + N   YTA+ +A+ +   V+EA  
Sbjct: 327 EIPPHAYSLVIGGLCKDGRTVEGSSVFENMNKKGCKANVAIYTALIDAYGKNGNVNEAIN 386

Query: 219 LLQQMKAKGFVPDE 232
           L ++MK +GF PD+
Sbjct: 387 LFERMKGEGFEPDD 400


>gi|152717462|dbj|BAF73723.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 85/163 (52%), Gaps = 14/163 (8%)

Query: 72  RNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R ++EI H      +  N V    + D+L KDG   +A  LF ++++KG  PD+  + ++
Sbjct: 243 RKMEEISH------IIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSM 296

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I  + S+G+  +A ++   ML   ++P+  TY  LI   A   +G      +A++   EM
Sbjct: 297 IVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALIN--AFVKEGK---FFEAEELYDEM 351

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + +G+ PN  TY+++ + F +  ++D A  +   M  KG  P+
Sbjct: 352 LPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPN 394



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 8/159 (5%)

Query: 74  LQEIFH-KMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           LQE+   K+  + +T NA  + +A  K+G   EA +L+ ++  +G +P+ + ++++I+ +
Sbjct: 313 LQEMLERKISPDVVTYNA--LINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGF 370

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               +   A  +F  M   G +PN  T+  LI G   A     K + D  + L EM   G
Sbjct: 371 CKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGA-----KRIDDGMELLHEMTETG 425

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +  +  TY  +   F     ++ A  LLQ+M + G  PD
Sbjct: 426 LVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPD 464



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 68/153 (44%), Gaps = 8/153 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E++ +M   G+  + +    M D L K     EA Q+F  +  K   P+VV  T +I  
Sbjct: 531 EELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLING 590

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y  AG+  + L +F  M   G+  NA TY  LI G     + N      A     EM+  
Sbjct: 591 YCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNING-----ALDIFQEMISS 645

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           G+ P+  T   +       +++  A  +L++++
Sbjct: 646 GVYPDTITIRNMLTGLWSKEELKRAVAMLEKLQ 678



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 69/147 (46%), Gaps = 5/147 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L  +G   EA +L+ ++  +G +PD + ++++I+      +  EA ++F  M +  
Sbjct: 517 LISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKS 576

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            +PN  T+  LI G   A       + D  +   EM  +G+  NA TY  +   F +   
Sbjct: 577 FSPNVVTFTTLINGYCKAGR-----VDDGLELFCEMGRRGIVANAITYITLICGFRKVGN 631

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEAL 239
           ++ A  + Q+M + G  PD   ++  L
Sbjct: 632 INGALDIFQEMISSGVYPDTITIRNML 658



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 73/157 (46%), Gaps = 7/157 (4%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F K+   GL  + V    +   L  +    EAL LF Q+ +    P+VV  T ++     
Sbjct: 137 FGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCR 196

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            G+  EA+ +  RM+  G+ P   TY  ++ G+    D  + +  D  + + E+    + 
Sbjct: 197 EGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDTVSAL--DLLRKMEEI--SHII 252

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           PN   Y+A+ ++  +  +  +A+ L  +M+ KG  PD
Sbjct: 253 PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPD 289



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 83/192 (43%), Gaps = 24/192 (12%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIK------DKGH-----MPD 121
           ++  +M + GL  + V    + D L  +G   +AL++F  ++      D  H      PD
Sbjct: 451 DLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPD 510

Query: 122 VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDA 181
           V  +  +I    + G+  EA  ++  M   G+ P+  TY+ +I GL   +      L +A
Sbjct: 511 VQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSR-----LDEA 565

Query: 182 QKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
            +    M  K   PN  T+T +   + +A +VD+   L  +M  +G V +       +  
Sbjct: 566 TQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIC- 624

Query: 242 KRGQGFRGVINI 253
               GFR V NI
Sbjct: 625 ----GFRKVGNI 632



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/195 (22%), Positives = 80/195 (41%), Gaps = 27/195 (13%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +F+ M T+G + N +    + D         + ++L  ++ + G + D   +  +I  
Sbjct: 380 EHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHG 439

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG- 190
           +   G    AL +   M++SG+ P+  T   L+ GL      N K L DA +    M   
Sbjct: 440 FYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLC----DNGK-LKDALEMFKVMQKS 494

Query: 191 ----------KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD--------E 232
                      G+ P+  TY  +    +   K  EA  L ++M  +G VPD        +
Sbjct: 495 KKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMID 554

Query: 233 KAVKEALIDKRGQGF 247
              K++ +D+  Q F
Sbjct: 555 GLCKQSRLDEATQMF 569


>gi|147784915|emb|CAN72973.1| hypothetical protein VITISV_019486 [Vitis vinifera]
          Length = 550

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 86/162 (53%), Gaps = 8/162 (4%)

Query: 73  NLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           N  E+F +MR  G+  N V    +   L ++    EA +L  ++K  G  P+++++  +I
Sbjct: 274 NAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLI 333

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
           + Y S G   +A  +F +M +SG +P+  TY +LI G + A   N+  + D  +   EM 
Sbjct: 334 DGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAK--NSAGVTDMVR---EME 388

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +G+ P+  TYT + +A VR+  +++A  +   M+  G V D
Sbjct: 389 ARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVAD 430



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 77/159 (48%), Gaps = 8/159 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +++F+KM    +  N      + +   K GL  + ++L+ ++K  G +P+V  + ++I  
Sbjct: 206 KQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICR 265

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
             + G+   A  +F  M   GVA N  TY  LI GL        ++L +A++ +  M   
Sbjct: 266 CCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQ----ERRVL-EAERLMCRMKRD 320

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           G+ PN  +Y  + + +     +D+A  L  QMK+ G  P
Sbjct: 321 GLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSP 359



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 75/169 (44%), Gaps = 9/169 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E++ KM+  G+  N      M      DG  + A +LF +++++G   +VV +  +I   
Sbjct: 242 ELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGL 301

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               +  EA R+  RM   G++PN  +Y  LI G  +  +     L  A     +M   G
Sbjct: 302 CQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGN-----LDKASSLFNQMKSSG 356

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
             P+  TY  +   F  A+       ++++M+A+G  P  K     L+D
Sbjct: 357 QSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPS-KVTYTILMD 404



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+  +M   GL+ N V    + D   K+G      QLF ++ +   + +   +T +I  +
Sbjct: 172 EVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGF 231

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G  K+ + ++ +M  +G+ PN YTY  +I       DG    L +A +   EM  +G
Sbjct: 232 FKMGLKKDGIELYEKMKLTGIVPNVYTYNSMI--CRCCNDGK---LNNAFELFDEMRERG 286

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +  N  TY  +     + ++V EA  L+ +MK  G  P+
Sbjct: 287 VACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPN 325



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 74/167 (44%), Gaps = 8/167 (4%)

Query: 67  EPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVV 123
           E  +   + ++  +M   GL+ + V    + DAL +     +A Q+++ ++  G + D+ 
Sbjct: 373 EAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIY 432

Query: 124 AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQK 183
            +  +I      G  KEA ++F  +    + PN   Y  +I G     +G++     A +
Sbjct: 433 IYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYG--YCKEGSSY---RALR 487

Query: 184 YLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
            L EM   GM PN  +Y +      + +K  EA  LL+ M   G  P
Sbjct: 488 LLKEMGENGMVPNVASYNSTIXILCKDEKWTEAEVLLKDMIELGLKP 534



 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 5/120 (4%)

Query: 112 QIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA 171
           +++ +G  P  V +T +++A   +   ++A +++  M  +G+  + Y Y VLI GL    
Sbjct: 386 EMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVG 445

Query: 172 DGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           D     + +A K    +    ++PN   Y  +   + +      A  LL++M   G VP+
Sbjct: 446 D-----MKEASKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPN 500



 Score = 40.4 bits (93), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 31/134 (23%), Positives = 55/134 (41%), Gaps = 8/134 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +I+  M   GL  +      +   L   G   EA +LF  + +    P+ V +  +I  Y
Sbjct: 417 QIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGY 476

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G    ALR+   M  +G+ PN  +Y   I  L            +A+  L +M+  G
Sbjct: 477 CKEGSSYRALRLLKEMGENGMVPNVASYNSTIXILCKDEKWT-----EAEVLLKDMIELG 531

Query: 193 MRPNAGTYTAVFEA 206
           ++P+   +  + +A
Sbjct: 532 LKPSISIWNMISKA 545


>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
 gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
          Length = 1041

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 67/138 (48%), Gaps = 5/138 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   K     EA  +  ++  KG  P  VA+TA+I+ +   G   EA RV   MLA G
Sbjct: 312 LIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLARG 371

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V  N +TY  L+KG+    D     +  A   L EM+  G++P+  TY  + E +++ Q 
Sbjct: 372 VKLNLFTYNALVKGVCKFGD-----MEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQN 426

Query: 213 VDEARGLLQQMKAKGFVP 230
               + LL +MK    VP
Sbjct: 427 TSRVKDLLSEMKKSNLVP 444



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 76/149 (51%), Gaps = 6/149 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L ++G    A++L ++  +KG +PDV  + ++I  +   G   +A ++   M   G
Sbjct: 627 LIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKG 686

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           ++PN  TY  LI GL  A +     +  A++    + GKG+  NA TY  + + + ++  
Sbjct: 687 ISPNIITYNALINGLCKAGE-----IERARELFDGIPGKGLAHNAVTYATIIDGYCKSGN 741

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALID 241
           + +A  L  +M  KG VP +  V  ALID
Sbjct: 742 LSKAFRLFDEMTLKG-VPPDSFVYSALID 769



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 79/149 (53%), Gaps = 6/149 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L + G   +A ++F  +   G  P+ V +T +I+ +   G+ +EA+R+   M   G
Sbjct: 452 IINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKG 511

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V P+   Y  +I GL       ++ + +A+ YL+EM+ +G++PN  TY A+   + ++ +
Sbjct: 512 VQPDVLCYNSVIIGLC-----KSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGE 566

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALID 241
           +  A    ++M   G  P++  V  ALID
Sbjct: 567 MQVADRYFKEMLGCGIAPND-VVCTALID 594



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 76/159 (47%), Gaps = 10/159 (6%)

Query: 77  IFHKMRTEGLTNNAVKMFDALSK----DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +F  M + G+  NAV ++  L K    +G   EA+++   +  KG  PDV+ + +VI   
Sbjct: 468 VFEIMVSLGVKPNAV-IYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGL 526

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             + + +EA    + M+  G+ PN YTY  LI G   + +        A +Y  EM+G G
Sbjct: 527 CKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQV-----ADRYFKEMLGCG 581

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + PN    TA+ + + +     EA  + + M  +   PD
Sbjct: 582 IAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPD 620



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 66/146 (45%), Gaps = 7/146 (4%)

Query: 86  LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVF 145
           L  N+V +   L K     EA     ++ ++G  P+V  + A+I  Y  +G+ + A R F
Sbjct: 517 LCYNSVII--GLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYF 574

Query: 146 MRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFE 205
             ML  G+APN      LI G             +A      M+G+ + P+  TY+A+  
Sbjct: 575 KEMLGCGIAPNDVVCTALIDGYCKEGSTT-----EATSIFRCMLGRSVHPDVRTYSALIH 629

Query: 206 AFVRAQKVDEARGLLQQMKAKGFVPD 231
             +R  K+  A  LL +   KG VPD
Sbjct: 630 GLLRNGKLQGAMELLSEFLEKGLVPD 655



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 74/154 (48%), Gaps = 9/154 (5%)

Query: 81  MRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ 137
           M  +G++ N +    + + L K G    A +LF  I  KG   + V +  +I+ Y  +G 
Sbjct: 682 MCQKGISPNIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGN 741

Query: 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA 197
             +A R+F  M   GV P+++ Y+ LI G     +GN +    A    +E V KG   + 
Sbjct: 742 LSKAFRLFDEMTLKGVPPDSFVYSALIDG--CRKEGNTE---KALSLFLESVQKGF-AST 795

Query: 198 GTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +  A+ + F ++ KV EA  LL+ M  K   PD
Sbjct: 796 SSLNALMDGFCKSGKVIEANQLLEDMVDKHVKPD 829



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 69/154 (44%), Gaps = 8/154 (5%)

Query: 78  FHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F +M   G+  N V    + D   K+G T EA  +F  +  +   PDV  ++A+I     
Sbjct: 574 FKEMLGCGIAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLR 633

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            G+ + A+ +    L  G+ P+ +TY  +I G           +G A +    M  KG+ 
Sbjct: 634 NGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGG-----IGKAFQLHEYMCQKGIS 688

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
           PN  TY A+     +A +++ AR L   +  KG 
Sbjct: 689 PNIITYNALINGLCKAGEIERARELFDGIPGKGL 722



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 68/135 (50%), Gaps = 5/135 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +A  + G   E  +L  ++++KG  P +V +  VI     AG+  EA  +   M   G
Sbjct: 242 LINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGEVDEAFELKKLMDKKG 301

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +  + +TY++LI G      G  K   +A+  L EM  KG++P    YTA+ + F+R   
Sbjct: 302 LVADVFTYSILIDGF-----GKQKRCTEAKLMLEEMFSKGLKPGHVAYTALIDGFMRQGD 356

Query: 213 VDEARGLLQQMKAKG 227
             EA  + ++M A+G
Sbjct: 357 SGEAFRVKEEMLARG 371



 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 63/139 (45%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   K GL  EA+  F   K  G +  ++    ++     A + +   R +  ML + 
Sbjct: 172 LIDGYKKKGLFDEAVSFFLGAKRNGFVVGLLCCNGLLSDLLKANKLELFWRFYNGMLEAN 231

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V  + YTY  LI     A  GNAK   + ++ L EM  KG  P+  TY  V     RA +
Sbjct: 232 VLHDVYTYTHLINAHFRA--GNAK---EGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGE 286

Query: 213 VDEARGLLQQMKAKGFVPD 231
           VDEA  L + M  KG V D
Sbjct: 287 VDEAFELKKLMDKKGLVAD 305



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 79/164 (48%), Gaps = 16/164 (9%)

Query: 95  DALSKDGLTHEALQLFAQ----IKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           + L  D L    L+LF +    + +   + DV  +T +I A+  AG  KE  R+   M  
Sbjct: 205 NGLLSDLLKANKLELFWRFYNGMLEANVLHDVYTYTHLINAHFRAGNAKEGKRLLFEMEE 264

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
            G +P+  TY V+I GL  A + +        K LM+   KG+  +  TY+ + + F + 
Sbjct: 265 KGCSPSLVTYNVVIGGLCRAGEVDEAF---ELKKLMD--KKGLVADVFTYSILIDGFGKQ 319

Query: 211 QKVDEARGLLQQMKAKGFVPDEKAVKEALID------KRGQGFR 248
           ++  EA+ +L++M +KG  P   A   ALID        G+ FR
Sbjct: 320 KRCTEAKLMLEEMFSKGLKPGHVAYT-ALIDGFMRQGDSGEAFR 362



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 84/196 (42%), Gaps = 46/196 (23%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+F  +  +GL +NAV    + D   K G   +A +LF ++  KG  PD   ++A+I+ 
Sbjct: 711 RELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDG 770

Query: 132 YASAGQGKEALRVFMRMLASGVA----------------------------------PNA 157
               G  ++AL +F+  +  G A                                  P+ 
Sbjct: 771 CRKEGNTEKALSLFLESVQKGFASTSSLNALMDGFCKSGKVIEANQLLEDMVDKHVKPDH 830

Query: 158 YTYAVLIKGLAAAADGNAK--ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
            TY +LI       D + K   L +A+++ ++M  + + PNA TYTA+   +  A +  E
Sbjct: 831 VTYTILI-------DYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALLSGYNMAGRRSE 883

Query: 216 ARGLLQQMKAKGFVPD 231
              L  +M AK   PD
Sbjct: 884 MFALFDEMIAKDIEPD 899



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 5/136 (3%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L + G   EA +L   +  KG + DV  ++ +I+ +    +  EA  +   M + G+ P
Sbjct: 280 GLCRAGEVDEAFELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKP 339

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
               Y  LI G     D      G+A +   EM+ +G++ N  TY A+ +   +   +++
Sbjct: 340 GHVAYTALIDGFMRQGDS-----GEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEK 394

Query: 216 ARGLLQQMKAKGFVPD 231
           A  LL +M   G  PD
Sbjct: 395 ADALLNEMIMVGIKPD 410



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 77/193 (39%), Gaps = 26/193 (13%)

Query: 68  PTDPRNLQEIFHKMRTEGLTNNAVKMF------------------DALSKDGLTHEALQL 109
           P D      +    R EG T  A+ +F                  D   K G   EA QL
Sbjct: 758 PPDSFVYSALIDGCRKEGNTEKALSLFLESVQKGFASTSSLNALMDGFCKSGKVIEANQL 817

Query: 110 FAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169
              + DK   PD V +T +I+ +   G  KEA + F+ M    + PNA TY  L+ G   
Sbjct: 818 LEDMVDKHVKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALLSGYNM 877

Query: 170 AADGNAKI-LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
           A   +    L D      EM+ K + P+  T++ + +A ++     +   L+  M  KG 
Sbjct: 878 AGRRSEMFALFD------EMIAKDIEPDGVTWSVMIDAHLKEGDHVKTLKLVDDMLKKG- 930

Query: 229 VPDEKAVKEALID 241
               K V   LID
Sbjct: 931 GNVSKNVCHVLID 943



 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 74/177 (41%), Gaps = 30/177 (16%)

Query: 93   MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
            + D   K G   EA Q F  ++ +  MP+ + +TA++  Y  AG+  E   +F  M+A  
Sbjct: 836  LIDYHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALLSGYNMAGRRSEMFALFDEMIAKD 895

Query: 153  VAPNAYTYAVLIKGLAAAAD---------------GN-----AKILGD----------AQ 182
            + P+  T++V+I       D               GN       +L D            
Sbjct: 896  IEPDGVTWSVMIDAHLKEGDHVKTLKLVDDMLKKGGNVSKNVCHVLIDPLCRKEHVSEVL 955

Query: 183  KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
            K L ++  +G+  +  T + +   F +A K+D A  +L+ M    +VPD   + + +
Sbjct: 956  KVLEKIEEQGLNLSLATCSTLVRCFHKAGKMDGAARVLKSMVRFKWVPDSTELNDLI 1012


>gi|218184541|gb|EEC66968.1| hypothetical protein OsI_33625 [Oryza sativa Indica Group]
          Length = 1351

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 98/213 (46%), Gaps = 34/213 (15%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           + +++ EI++ M+ +G  +N V    + DAL + G   EAL++F ++K KG +P+  ++ 
Sbjct: 394 ESQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYN 453

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD-------------- 172
           ++I  +  A +  +AL +F  M   G  PN YT+ + I     + +              
Sbjct: 454 SLISGFLKADRFGDALELFKYMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSK 513

Query: 173 --------GNAKI--------LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
                   GNA +        LG A++   E+   G+ P+  TYT + +   +A K DEA
Sbjct: 514 GIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEA 573

Query: 217 RGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRG 249
             +   M     VPD   V  +LID   +  RG
Sbjct: 574 VKIFYDMIENNCVPDVLVVN-SLIDTLYKAGRG 605



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 79/160 (49%), Gaps = 8/160 (5%)

Query: 75   QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            + +F++M   G   N      + +     G T +   LF  + D+G  PD+ ++T +I+ 
Sbjct: 959  ENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDT 1018

Query: 132  YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               AGQ  + L  F ++L  G+ P+  TY +LI GL     G +K L +A     EM  K
Sbjct: 1019 LCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGL-----GKSKRLEEAVSLFNEMQKK 1073

Query: 192  GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            G+ PN  TY ++     +A K  EA  + +++  KG+ P+
Sbjct: 1074 GIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPN 1113



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 77/160 (48%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +FH+++  G++ + +    M    SK     EA+++F  + +   +PDV+   ++I+ 
Sbjct: 539 KRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLVVNSLIDT 598

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              AG+G EA ++F ++    + P   TY  L+ GL    +G  K   +    L EM   
Sbjct: 599 LYKAGRGDEAWQIFYQLKEMNLEPTDGTYNTLLAGL--GREGKVK---EVMHLLEEMYHS 653

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              PN  TY  + +   +   V++A  +L  M  KG +PD
Sbjct: 654 NYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPD 693



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 10/163 (6%)

Query: 77   IFHKMRTEGLTNNAVKMF----DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
            +F  M  +G+ N  +K +    D L K G  ++ L  F Q+ + G  PD++ +  +I+  
Sbjct: 996  LFQDMVDQGI-NPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGL 1054

Query: 133  ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              + + +EA+ +F  M   G+ PN YTY  LI  L     G A    +A K   E++ KG
Sbjct: 1055 GKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHL-----GKAGKAAEAGKMYEELLTKG 1109

Query: 193  MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAV 235
             +PN  TY A+   +  +   D A     +M   G +P+    
Sbjct: 1110 WKPNVFTYNALIRGYSVSGSTDSAYAAYGRMIVGGCLPNSSTC 1152



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 78/160 (48%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +++F KM+      + V    + D  + +G +   ++++  +K  G+  +VVA+TAVI+A
Sbjct: 364 KDVFWKMKKSDQKPDRVTYITLLDKFADNGESQSVMEIWNAMKADGYNDNVVAYTAVIDA 423

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G+  EAL +F  M   G+ P  Y+Y  LI G        A   GDA +    M   
Sbjct: 424 LCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFL-----KADRFGDALELFKYMDIH 478

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G +PN  T+      + ++ +  +A    + MK+KG VPD
Sbjct: 479 GPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPD 518



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 64/128 (50%), Gaps = 5/128 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA ++ A+++++G  PDV+ HT +I+    AG+  +A  VF +M  S   P+  TY  L+
Sbjct: 327 EAYRILAEMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLL 386

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
              A   +  +       +    M   G   N   YTAV +A  +  +V EA  +  +MK
Sbjct: 387 DKFADNGESQS-----VMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMK 441

Query: 225 AKGFVPDE 232
            KG VP++
Sbjct: 442 QKGIVPEQ 449



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 76/160 (47%), Gaps = 8/160 (5%)

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F  M   G   N    V   +   K G + +A+Q +  +K KG +PDVVA  AV+   
Sbjct: 470 ELFKYMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGL 529

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           A +G+   A RVF  + A GV+P+  TY ++IK  + A+        +A K   +M+   
Sbjct: 530 AKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASK-----FDEAVKIFYDMIENN 584

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
             P+     ++ +   +A + DEA  +  Q+K     P +
Sbjct: 585 CVPDVLVVNSLIDTLYKAGRGDEAWQIFYQLKEMNLEPTD 624



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 76/156 (48%), Gaps = 8/156 (5%)

Query: 87  TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFM 146
           T N +  F  L K G   EAL+++  +   G +P V  ++ ++ A+      +  L +  
Sbjct: 241 TYNGLVYF--LVKSGFDREALEVYKVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLR 298

Query: 147 RMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEA 206
            M A GV PN Y+Y + I+ L     G A+   +A + L EM  +G +P+  T+T + + 
Sbjct: 299 EMEAHGVKPNVYSYTICIRVL-----GQARRFDEAYRILAEMENEGCKPDVITHTVLIQV 353

Query: 207 FVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDK 242
              A ++ +A+ +  +MK     PD +     L+DK
Sbjct: 354 LCDAGRISDAKDVFWKMKKSDQKPD-RVTYITLLDK 388



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 8/162 (4%)

Query: 73  NLQEIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           ++ E+F  M+ + +  N      +F  L  +G    A      +K+ G + +   +  ++
Sbjct: 187 DMAEVFDVMQRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLV 246

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
                +G  +EAL V+  M+  GV P+  TY+VL+      A G  + +      L EM 
Sbjct: 247 YFLVKSGFDREALEVYKVMMVDGVVPSVRTYSVLM-----VAFGKRRDVETVLWLLREME 301

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             G++PN  +YT       +A++ DEA  +L +M+ +G  PD
Sbjct: 302 AHGVKPNVYSYTICIRVLGQARRFDEAYRILAEMENEGCKPD 343



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 73/156 (46%), Gaps = 8/156 (5%)

Query: 93   MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
            + D L K     EA+ LF +++ KG +P++  + ++I     AG+  EA +++  +L  G
Sbjct: 1050 LIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKG 1109

Query: 153  VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTY--TAVFEAFVRA 210
              PN +TY  LI+G + +   ++     A      M+  G  PN+ T     + + F++ 
Sbjct: 1110 WKPNVFTYNALIRGYSVSGSTDS-----AYAAYGRMIVGGCLPNSSTCHIHELMKTFLKG 1164

Query: 211  QKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
               D    ++  + A+G +   +A K  +  +   G
Sbjct: 1165 DS-DSYEIIVTFINAEGMLAYSRAWKFCISSREDNG 1199



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/175 (22%), Positives = 76/175 (43%), Gaps = 10/175 (5%)

Query: 63   VVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM 119
            +VDE   D    + +F +M+  G   +      + DA+ K     E L++  ++  KG+ 
Sbjct: 844  LVDENLIDIA--EGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYE 901

Query: 120  PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
               V +  +I     + + ++A+ ++  +++ G +P   TY  L+ GL  A       + 
Sbjct: 902  STYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGR-----IE 956

Query: 180  DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
            DA+    EM+  G + N   Y  +      A   ++   L Q M  +G  PD K+
Sbjct: 957  DAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKS 1011



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 69/156 (44%), Gaps = 8/156 (5%)

Query: 75  QEIFHKMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            E+  K ++ G+   T +   +   L  + L   A  LFA++K+ G  PD   +  +++A
Sbjct: 819 HELVKKFKSFGVSLKTGSYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDA 878

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              + + +E L+V   M   G      TY  +I GL       ++ L  A      ++ +
Sbjct: 879 MGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLV-----KSRRLEQAIDLYYNLMSQ 933

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
           G  P   TY  + +  ++A ++++A  L  +M   G
Sbjct: 934 GFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYG 969



 Score = 40.8 bits (94), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 3/76 (3%)

Query: 74  LQEIFHKMRTEGL-TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           L+E++H      L T N +   D L K+G  ++AL +   +  KG +PD+ ++  VI   
Sbjct: 647 LEEMYHSNYPPNLITYNTI--LDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGL 704

Query: 133 ASAGQGKEALRVFMRM 148
               +  EA  +F +M
Sbjct: 705 VKEERYNEAFSIFCQM 720


>gi|15237467|ref|NP_199470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180372|sp|Q9LS25.1|PP420_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g46580, chloroplastic; Flags: Precursor
 gi|8885599|dbj|BAA97529.1| unnamed protein product [Arabidopsis thaliana]
 gi|332008017|gb|AED95400.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 711

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 79/149 (53%), Gaps = 8/149 (5%)

Query: 99  KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAY 158
           +  L ++A++ F ++   G MPD V ++A+++ Y+ +G+ +E L ++ R +A+G  P+A 
Sbjct: 233 RCNLYNKAIEWFERMYKTGLMPDEVTYSAILDVYSKSGKVEEVLSLYERAVATGWKPDAI 292

Query: 159 TYAVLIKGLAAAADGNAKILGDAQKY-LMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
            ++VL K    A D       D  +Y L EM    ++PN   Y  + EA  RA K   AR
Sbjct: 293 AFSVLGKMFGEAGD------YDGIRYVLQEMKSMDVKPNVVVYNTLLEAMGRAGKPGLAR 346

Query: 218 GLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
            L  +M   G  P+EK +  AL+   G+ 
Sbjct: 347 SLFNEMLEAGLTPNEKTLT-ALVKIYGKA 374



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 72/159 (45%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E F +M   GL  + V    + D  SK G   E L L+ +    G  PD +A + + + +
Sbjct: 242 EWFERMYKTGLMPDEVTYSAILDVYSKSGKVEEVLSLYERAVATGWKPDAIAFSVLGKMF 301

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             AG       V   M +  V PN   Y  L++ +     G A   G A+    EM+  G
Sbjct: 302 GEAGDYDGIRYVLQEMKSMDVKPNVVVYNTLLEAM-----GRAGKPGLARSLFNEMLEAG 356

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + PN  T TA+ + + +A+   +A  L ++MKAK +  D
Sbjct: 357 LTPNEKTLTALVKIYGKARWARDALQLWEEMKAKKWPMD 395



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 77/169 (45%), Gaps = 18/169 (10%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHM-PDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
           + +  +  GL  EA +LF  +K+     PD  ++TA++  Y S G+ ++A+ +F  ML +
Sbjct: 402 LLNMCADIGLEEEAERLFNDMKESVQCRPDNFSYTAMLNIYGSGGKAEKAMELFEEMLKA 461

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN---AGTYTAVFEAFV 208
           GV  N      L++ L     G AK + D        + +G++P+    G   +V     
Sbjct: 462 GVQVNVMGCTCLVQCL-----GKAKRIDDVVYVFDLSIKRGVKPDDRLCGCLLSVMALCE 516

Query: 209 RAQKVDEARGLLQQMKAK-----GFVPDEKAVKEALIDKRGQGFRGVIN 252
            ++  ++    L++   K       + DEK   E + ++    F+ VIN
Sbjct: 517 SSEDAEKVMACLERANKKLVTFVNLIVDEKTEYETVKEE----FKLVIN 561



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 76/164 (46%), Gaps = 11/164 (6%)

Query: 75  QEIFHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           + +F++M   GLT N  K   AL     K     +ALQL+ ++K K    D + +  ++ 
Sbjct: 346 RSLFNEMLEAGLTPNE-KTLTALVKIYGKARWARDALQLWEEMKAKKWPMDFILYNTLLN 404

Query: 131 AYASAGQGKEALRVFMRMLAS-GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
             A  G  +EA R+F  M  S    P+ ++Y  ++      + G A+    A +   EM+
Sbjct: 405 MCADIGLEEEAERLFNDMKESVQCRPDNFSYTAMLN--IYGSGGKAE---KAMELFEEML 459

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK 233
             G++ N    T + +   +A+++D+   +      +G  PD++
Sbjct: 460 KAGVQVNVMGCTCLVQCLGKAKRIDDVVYVFDLSIKRGVKPDDR 503


>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 1011

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/165 (30%), Positives = 84/165 (50%), Gaps = 11/165 (6%)

Query: 73  NLQ---EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           NLQ    I  +M   GL  NAV    +  A +K+G   E+  +  +++++G +PDV  + 
Sbjct: 440 NLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYN 499

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
           ++I  +  A + +EA    M ML   + PNA+TY   I G + A  G  +I   A +Y  
Sbjct: 500 SLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKA--GEMEI---ADRYFN 554

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           EM+  G+ PN G YTA+ E   +   V EA  + + + ++  + D
Sbjct: 555 EMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQD 599



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 74/139 (53%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   LS++G  HEA  +F+++++KG +P+   + ++I      G   +A ++   M   G
Sbjct: 606 LIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKG 665

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+  TY +LI GL  A +     +  A+    ++ G+G+ PN  TY A+ + + +++ 
Sbjct: 666 INPDIVTYNILIDGLCKAGE-----IERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKN 720

Query: 213 VDEARGLLQQMKAKGFVPD 231
              A  LL++M  +G  PD
Sbjct: 721 PTAAFQLLEEMLLRGVPPD 739



 Score = 77.4 bits (189), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 40/139 (28%), Positives = 71/139 (51%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + + K G   +AL++  ++ +KG  PD   ++ +IE +        A  +   M    
Sbjct: 361 LLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRK 420

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +AP   TY+V+I GL    +     L      L EMV  G++PNA  YT +  A  +  +
Sbjct: 421 LAPTVLTYSVIINGLCRCGN-----LQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGR 475

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V+E+R +L++M+ +G +PD
Sbjct: 476 VEESRMILERMREQGILPD 494



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/137 (35%), Positives = 71/137 (51%), Gaps = 5/137 (3%)

Query: 95  DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           D  SK G    A + F ++   G +P+V  +TA+IE +   G   EA  VF  +L+  V 
Sbjct: 538 DGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVL 597

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
            +  TY+VLI GL+     N K + +A     E+  KG+ PNA TY ++     +   VD
Sbjct: 598 QDVQTYSVLIHGLSR----NGK-MHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVD 652

Query: 215 EARGLLQQMKAKGFVPD 231
           +A  LL++M  KG  PD
Sbjct: 653 KASQLLEEMCIKGINPD 669



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 50/151 (33%), Positives = 76/151 (50%), Gaps = 10/151 (6%)

Query: 95  DALSKDGLTHEALQLFAQIKDK--GH--MPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           ++L  D L    ++LF ++ D    H  +PDV  +T +I A+   G  K+A RV + M  
Sbjct: 184 NSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGE 243

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
            G +PN  TY V+I GL       A++L +A +    MV KG+ P+  TY  +   F   
Sbjct: 244 KGCSPNLVTYNVIIGGLC-----RARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCME 298

Query: 211 QKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           ++  EA+ +L +M   G  P E     ALID
Sbjct: 299 KRSREAKLMLLEMIDVGLKP-EPITYNALID 328



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 48/167 (28%), Positives = 79/167 (47%), Gaps = 8/167 (4%)

Query: 76  EIFHKMRTEGLTNNAV--KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           ++F +M  +G  +      + +   K G   EA  L  ++ +K  +P+ V +T++I+   
Sbjct: 761 DLFQEMLEKGFASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNC 820

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG   EA R+++ M    V P A TY  L+ G       N   + +      EMV KG+
Sbjct: 821 KAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYH-----NIGNMSEVSALFEEMVAKGI 875

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
            P+  TY  + +A+ R   V EA  L  ++  KG +P   A  +ALI
Sbjct: 876 EPDKMTYYVMIDAYCREGNVMEACKLKDEILVKG-MPMSVAAYDALI 921



 Score = 66.6 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 52/212 (24%), Positives = 88/212 (41%), Gaps = 32/212 (15%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++  +M  +G+  + V    + D L K G    A  LF  I+ +G  P+ V + A+++ Y
Sbjct: 656 QLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGY 715

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLI---------------------KGLAAAA 171
             +     A ++   ML  GV P+A+ Y V++                     KG A+  
Sbjct: 716 CKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTV 775

Query: 172 DGNAKILG--------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
             N  I G        +A   L EM+ K   PN  TYT++ +   +A  + EA+ L  +M
Sbjct: 776 SFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEM 835

Query: 224 KAKGFVPDEKAVKEALIDKRGQGFRGVINILF 255
           + +  +P  K     L      G    ++ LF
Sbjct: 836 QERNVMPTAKTYTSLLHGYHNIGNMSEVSALF 867



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/139 (32%), Positives = 68/139 (48%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D+  K G   EA+ +F   K+    P +++  +++       + +   +VF  M A  
Sbjct: 151 LMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHK 210

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V P+ YTY  +I   A    GN K   DA++ L+EM  KG  PN  TY  +     RA+ 
Sbjct: 211 VLPDVYTYTNMIS--AHCKVGNVK---DAKRVLLEMGEKGCSPNLVTYNVIIGGLCRARL 265

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +DEA  L + M  KG VPD
Sbjct: 266 LDEAIELKRSMVDKGLVPD 284



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 41/165 (24%), Positives = 77/165 (46%), Gaps = 8/165 (4%)

Query: 72  RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           ++ + +  +M  +G + N V    +   L +  L  EA++L   + DKG +PD+  +  +
Sbjct: 232 KDAKRVLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDIL 291

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I  +    + +EA  + + M+  G+ P   TY  LI G     D     +  A +   EM
Sbjct: 292 INGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGD-----IEQAFRIKDEM 346

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK 233
           V  G+  N   +  +     +A K+++A  ++Q+M  KG  PD +
Sbjct: 347 VACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQ 391



 Score = 63.2 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 37/135 (27%), Positives = 67/135 (49%), Gaps = 5/135 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M  A  K G   +A ++  ++ +KG  P++V +  +I     A    EA+ +   M+  G
Sbjct: 221 MISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIELKRSMVDKG 280

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+ YTY +LI G             +A+  L+EM+  G++P   TY A+ + F+R   
Sbjct: 281 LVPDLYTYDILINGFCMEKRSR-----EAKLMLLEMIDVGLKPEPITYNALIDGFMRQGD 335

Query: 213 VDEARGLLQQMKAKG 227
           +++A  +  +M A G
Sbjct: 336 IEQAFRIKDEMVACG 350



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 69/136 (50%), Gaps = 5/136 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   K G+  EA +L+ +++++  MP    +T+++  Y + G   E   +F  M+A G
Sbjct: 815 LIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKG 874

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+  TY V+I   A   +GN     +A K   E++ KGM  +   Y A+ +A  + ++
Sbjct: 875 IEPDKMTYYVMID--AYCREGNVM---EACKLKDEILVKGMPMSVAAYDALIQALCKKEE 929

Query: 213 VDEARGLLQQMKAKGF 228
             E   LL ++   GF
Sbjct: 930 FFEVLKLLNEIGESGF 945


>gi|356530056|ref|XP_003533600.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 694

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 8/159 (5%)

Query: 74  LQEIFHK-MRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           L+E+ HK +    +T N+  + D L K G    AL L  ++  +G   DV+ +T++++  
Sbjct: 435 LREMLHKNVVPNTVTYNS--LIDGLCKSGRITSALDLMKELHHRGQPADVITYTSLLDGL 492

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
                  +A+ +FM+M   G+ PN YTY  LI GL   A      L +AQK    ++ KG
Sbjct: 493 CKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGAR-----LKNAQKLFQHILVKG 547

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              +  TY  +     +   +DEA  +  +M+  G +PD
Sbjct: 548 CCIDVYTYNVMIGGLCKEGMLDEALAMKSKMEDNGCIPD 586



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 74/158 (46%), Gaps = 9/158 (5%)

Query: 78  FH-KMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           FH K+  +G   N V    + + L K G T  A++L   I+D+   PDVV +  +I+   
Sbjct: 224 FHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAIKLLRMIEDRSTRPDVVMYNTIIDGLC 283

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
                 EA   +  M + G+ P+  TY+ LI G   A       L  A   L EM  K +
Sbjct: 284 KDKLVNEAYDFYTEMNSRGIFPDVITYSTLICGFCLAGQ-----LMGAFSLLNEMTLKNI 338

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            P+  TYT + +A  +  K+ EA+ LL  M  +G  P+
Sbjct: 339 NPDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPN 376



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 63/131 (48%), Gaps = 5/131 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L KD L +EA   + ++  +G  PDV+ ++ +I  +  AGQ   A  +   M    
Sbjct: 278 IIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLKN 337

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+ YTY +LI  L          L +A+  L  M  +G++PN  TY+ + + +    +
Sbjct: 338 INPDVYTYTILIDALCKEGK-----LKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGE 392

Query: 213 VDEARGLLQQM 223
           V  A+ +   M
Sbjct: 393 VHNAKQIFHAM 403



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 77/149 (51%), Gaps = 6/149 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DAL K+G   EA  L   +  +G  P+VV ++ +++ Y   G+   A ++F  M+ + 
Sbjct: 348 LIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVHNAKQIFHAMVQTE 407

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V P+  +Y ++I GL        K + +A   L EM+ K + PN  TY ++ +   ++ +
Sbjct: 408 VNPSVCSYNIMINGLC-----KGKSVDEAMNLLREMLHKNVVPNTVTYNSLIDGLCKSGR 462

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALID 241
           +  A  L++++  +G  P +     +L+D
Sbjct: 463 ITSALDLMKELHHRG-QPADVITYTSLLD 490



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 68/137 (49%), Gaps = 5/137 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K+    +A+ LF ++K++G  P+   +TA+I+      + K A ++F  +L  G
Sbjct: 488 LLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGARLKNAQKLFQHILVKG 547

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
              + YTY V+I GL         +L +A     +M   G  P+A T+  +  +     +
Sbjct: 548 CCIDVYTYNVMIGGLCKEG-----MLDEALAMKSKMEDNGCIPDAVTFEIIIRSLFEKDE 602

Query: 213 VDEARGLLQQMKAKGFV 229
            D+A  LL +M AKG +
Sbjct: 603 NDKAEKLLHEMIAKGLL 619



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 56/120 (46%), Gaps = 8/120 (6%)

Query: 77  IFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F KM+  G+  N      + D L K      A +LF  I  KG   DV  +  +I    
Sbjct: 504 LFMKMKERGIQPNKYTYTALIDGLCKGARLKNAQKLFQHILVKGCCIDVYTYNVMIGGLC 563

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G   EAL +  +M  +G  P+A T+ ++I+ L    D N K    A+K L EM+ KG+
Sbjct: 564 KEGMLDEALAMKSKMEDNGCIPDAVTFEIIIRSL-FEKDENDK----AEKLLHEMIAKGL 618



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 61/157 (38%), Gaps = 32/157 (20%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A+ L  Q++ KG  PD+V  + +I  +   GQ   +  V  ++L  G  PN      L+K
Sbjct: 151 AISLSKQMEVKGIEPDLVTLSILINCFCHLGQMAFSFSVLGKILKLGYQPNTIILTTLMK 210

Query: 166 GLA----------------------------AAADGNAKILGD---AQKYLMEMVGKGMR 194
           GL                                +G  KI G+   A K L  +  +  R
Sbjct: 211 GLCLKGEVKKSLHFHDKVVAQGFQMNQVSYGTLLNGLCKI-GETRCAIKLLRMIEDRSTR 269

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           P+   Y  + +   + + V+EA     +M ++G  PD
Sbjct: 270 PDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPD 306


>gi|218191262|gb|EEC73689.1| hypothetical protein OsI_08260 [Oryza sativa Indica Group]
          Length = 595

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 90/182 (49%), Gaps = 24/182 (13%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY-- 132
           FH M   GL+ + +    + +   K G   EA QLF Q+ + G  PDV+A+T +++ +  
Sbjct: 338 FHDMVQRGLSIDVIVYTILMNGYCKAGRLQEACQLFVQMTNLGIKPDVIAYTVLLDGHLK 397

Query: 133 ASAGQGKEAL----RVFM------RMLAS----GVAPNAYTYAVLIKGLAAAADGNAKIL 178
            +  QG E +    R F+      ++L+S     + P+   Y VLI G        A+ L
Sbjct: 398 ETLQQGWEGIAKERRSFLLRANHNKLLSSMKDMQIEPDVPCYTVLIDGKC-----KAEYL 452

Query: 179 GDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEA 238
            +A++   EM+ KG+ P+A  YTA+   +    ++ +A  LLQ+M  KG  PDE    E 
Sbjct: 453 VEARELFDEMLQKGLTPDAYAYTALINGYCSQGEISKAEDLLQEMIDKGIEPDELTFSEV 512

Query: 239 LI 240
            I
Sbjct: 513 NI 514



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 8/154 (5%)

Query: 78  FHKMRTEGLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F K +  GL  + V      D   K+G  +EA++L  ++K  G  PD + +T +I  Y  
Sbjct: 93  FLKFKDSGLHLDKVIYNIAMDTYCKNGNMNEAVKLLNEMKCGGLTPDKIHYTCLINGYCL 152

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            G+ + A +VF  ML + + P+  TY +L  G   +      ++ +    L  M  +G+ 
Sbjct: 153 KGEMQNAQQVFEEMLKANIEPDIVTYNILASGFCKSG-----LVMEVFDLLDRMADQGLE 207

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
           PN+ TY      F R   + EA  L   ++ KG 
Sbjct: 208 PNSLTYGIAIVGFCRGGNLSEAEVLFNVVEEKGI 241



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 72/154 (46%), Gaps = 11/154 (7%)

Query: 92  KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
           K+     ++G   +A   F  +  +G   DV+ +T ++  Y  AG+ +EA ++F++M   
Sbjct: 320 KLISIYCQNGDMDKAHLWFHDMVQRGLSIDVIVYTILMNGYCKAGRLQEACQLFVQMTNL 379

Query: 152 GVAPNAYTYAVLIKG-----LAAAADGNAK------ILGDAQKYLMEMVGKGMRPNAGTY 200
           G+ P+   Y VL+ G     L    +G AK      +  +  K L  M    + P+   Y
Sbjct: 380 GIKPDVIAYTVLLDGHLKETLQQGWEGIAKERRSFLLRANHNKLLSSMKDMQIEPDVPCY 439

Query: 201 TAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
           T + +   +A+ + EAR L  +M  KG  PD  A
Sbjct: 440 TVLIDGKCKAEYLVEARELFDEMLQKGLTPDAYA 473



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 67/157 (42%), Gaps = 8/157 (5%)

Query: 78  FHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           +  M + G+  N      +     K G+T E +  F + KD G   D V +   ++ Y  
Sbjct: 58  YEAMVSHGIETNCHIVSYLLQCFRKLGMTSEVIAYFLKFKDSGLHLDKVIYNIAMDTYCK 117

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            G   EA+++   M   G+ P+   Y  LI G     +     + +AQ+   EM+   + 
Sbjct: 118 NGNMNEAVKLLNEMKCGGLTPDKIHYTCLINGYCLKGE-----MQNAQQVFEEMLKANIE 172

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           P+  TY  +   F ++  V E   LL +M  +G  P+
Sbjct: 173 PDIVTYNILASGFCKSGLVMEVFDLLDRMADQGLEPN 209


>gi|218191264|gb|EEC73691.1| hypothetical protein OsI_08267 [Oryza sativa Indica Group]
          Length = 751

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 88/174 (50%), Gaps = 24/174 (13%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY-- 132
           FH M   GL+ + +    + +   K G   EA QLF Q+ + G  PDV+A+T +++ +  
Sbjct: 563 FHDMVQRGLSIDVIVYTILMNGYCKAGRLQEACQLFVQMTNLGIKPDVIAYTVLLDGHLK 622

Query: 133 ASAGQGKEAL----RVFM------RMLAS----GVAPNAYTYAVLIKGLAAAADGNAKIL 178
            +  QG E +    R F+      ++L+S     + P+   Y VLI G        A+ L
Sbjct: 623 ETLQQGWEGIAKERRSFLLRANHNKLLSSMKDMQIEPDVPCYTVLIDG-----KCKAEYL 677

Query: 179 GDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
            +A++   EM+ KG+ P+A  YTA+   +    ++ +A  LLQ+M  KG  PDE
Sbjct: 678 VEARELFDEMLQKGLTPDAYAYTALINGYCSQGEISKAEDLLQEMIDKGIEPDE 731



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 12/161 (7%)

Query: 92  KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
           K+     ++G   +A   F  +  +G   DV+ +T ++  Y  AG+ +EA ++F++M   
Sbjct: 545 KLISIYCQNGDMDKAHLWFHDMVQRGLSIDVIVYTILMNGYCKAGRLQEACQLFVQMTNL 604

Query: 152 GVAPNAYTYAVLIKG-----LAAAADGNAK------ILGDAQKYLMEMVGKGMRPNAGTY 200
           G+ P+   Y VL+ G     L    +G AK      +  +  K L  M    + P+   Y
Sbjct: 605 GIKPDVIAYTVLLDGHLKETLQQGWEGIAKERRSFLLRANHNKLLSSMKDMQIEPDVPCY 664

Query: 201 TAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           T + +   +A+ + EAR L  +M  KG  PD  A   ALI+
Sbjct: 665 TVLIDGKCKAEYLVEARELFDEMLQKGLTPDAYAYT-ALIN 704



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 57/106 (53%), Gaps = 5/106 (4%)

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
           +L + +KD    PDV  +T +I+    A    EA  +F  ML  G+ P+AY Y  LI G 
Sbjct: 647 KLLSSMKDMQIEPDVPCYTVLIDGKCKAEYLVEARELFDEMLQKGLTPDAYAYTALINGY 706

Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV 213
            +  +     +  A+  L EM+ KG+ P+  T++ + ++ +R++K+
Sbjct: 707 CSQGE-----ISKAEDLLQEMIDKGIEPDELTFSVLNQSSLRSRKI 747



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 79/182 (43%), Gaps = 10/182 (5%)

Query: 71  PRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQ----LFAQIKDKGHMPDVVAHT 126
           P  L  + H  RT     +   M D L K  +T   +Q    LF+ I   G +P V    
Sbjct: 113 PEILPLVDHHRRTCATPCSLSFMVDCLIKACITCYDVQATICLFSGICRLGVVPSVWTWN 172

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
            +++  A  G+ +  L  +  M    + P+ YT+A++ + L       AK + +A +   
Sbjct: 173 LLLKFIAETGEYEMVLAAYNEMKCFQLTPDVYTFAIVTRSLF-----QAKKVDEALQVWA 227

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
           EM   G++P+A  Y++        +K D A  +LQ++  +  VP E      ++D   + 
Sbjct: 228 EMTEMGVKPDARGYSSFLIGLCDCRKYDLAYVILQEINREK-VPVEAMAYNMVMDGLCKE 286

Query: 247 FR 248
            R
Sbjct: 287 MR 288



 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
           EA +LF ++  KG  PD  A+TA+I  Y S G+  +A  +   M+  G+ P+  T++VL
Sbjct: 679 EARELFDEMLQKGLTPDAYAYTALINGYCSQGEISKAEDLLQEMIDKGIEPDELTFSVL 737



 Score = 44.7 bits (104), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 37/179 (20%), Positives = 72/179 (40%), Gaps = 11/179 (6%)

Query: 69  TDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGL------THEALQLFAQIKDKGHMPDV 122
           T+   +  +    R  G+T+  +  F      GL         A Q+F ++      PD+
Sbjct: 341 TNCHIVSYLLQCFRKLGMTSEVIAYFLKFKDSGLHLDKGEMQNAQQVFEEMLKANIEPDI 400

Query: 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQ 182
           V +  +   +  +G   E   +  RM   G+ PN+ TY + I G      GN   L +A+
Sbjct: 401 VTYNILASGFCKSGLVMEVFDLLDRMADQGLEPNSLTYGIAIVGFCRG--GN---LSEAE 455

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
                +  KG+      Y+++   ++ +   D A  L  ++  +G + D  +  + + D
Sbjct: 456 VLFNVVEEKGIDHIEVMYSSMVCGYLLSGWTDHAYMLFVRVARQGNLVDHFSCSKLIND 514



 Score = 43.5 bits (101), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 17/118 (14%)

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
           PDV     V  +   A +  EAL+V+  M   GV P+A  Y+  + GL            
Sbjct: 201 PDVYTFAIVTRSLFQAKKVDEALQVWAEMTEMGVKPDARGYSSFLIGLC----------- 249

Query: 180 DAQKY------LMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           D +KY      L E+  + +   A  Y  V +   +  ++DEA  LL+    +G  PD
Sbjct: 250 DCRKYDLAYVILQEINREKVPVEAMAYNMVMDGLCKEMRLDEAEKLLENKARQGSNPD 307


>gi|255660826|gb|ACU25582.1| pentatricopeptide repeat-containing protein [Phyla dulcis]
          Length = 418

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 111/236 (47%), Gaps = 13/236 (5%)

Query: 2   AATAILRWLLHSPSPKRS-LRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPF 60
           +A+A+   ++ +   +RS + + +  + A L+      + +  +  +  + K   P+D  
Sbjct: 47  SASAVFAAIIETKGNQRSDIYVFSGLITAYLESGFLRDAVECYR--LTREHKFWVPFDTC 104

Query: 61  KKVVDE-EPTDPRNLQEIFHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIKD 115
           KK+++        NL   F++   E     ++  F+ L     K+G    A  +F  I  
Sbjct: 105 KKMLEHLVKLKYFNLVWAFYEEILECGYPASLYFFNILMHRFCKEGDIRLAQSVFDAITK 164

Query: 116 KGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNA 175
            G  P VV++  ++  Y   G   E  ++   M ASGV P+ YTY+VLI GL   +    
Sbjct: 165 WGLRPSVVSYNTLMNGYIRLGDLNEGFKLKSAMHASGVQPDVYTYSVLINGLCKESK--- 221

Query: 176 KILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             + DA +   EM+ KG+ PN  T+T + +   +  +VD A  + +QM ++  +PD
Sbjct: 222 --MDDANELFEEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEVYKQMLSQSLLPD 275



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 84/201 (41%), Gaps = 35/201 (17%)

Query: 63  VVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM 119
           +  E   D  N  E+F +M  +GL  N V    + D   K+G    A++++ Q+  +  +
Sbjct: 216 LCKESKMDDAN--ELFEEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEVYKQMLSQSLL 273

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN----- 174
           PD++ +  +I      G   +A  +   M   G+ P+  TY  LI G     D +     
Sbjct: 274 PDLITYNTLIYGLCKKGALNQAHDLMDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEH 333

Query: 175 -----------------AKILG--------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
                            A I G        DA+K + EM+  G++P+ GTYT +   F +
Sbjct: 334 RKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMMREMLSFGLKPDTGTYTMIINEFCK 393

Query: 210 AQKVDEARGLLQQMKAKGFVP 230
              V +   LL++M+  G  P
Sbjct: 394 KGDVWKGSKLLKEMQRDGHAP 414


>gi|224144580|ref|XP_002325338.1| predicted protein [Populus trichocarpa]
 gi|222862213|gb|EEE99719.1| predicted protein [Populus trichocarpa]
          Length = 481

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 79/159 (49%), Gaps = 8/159 (5%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F +M +E  + + +    +  AL K+G+  EALQ+F  + D    P ++ +  VI+    
Sbjct: 290 FVQMVSENCSPDIITYNTLLTALCKEGMVDEALQVFVLLSDSNCSPGLITYNTVIDGLTR 349

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            G   EAL+++ +M+  G+AP+  T+  L+ G           + DA + L EM  +  R
Sbjct: 350 RGYMDEALKLYNQMIEKGIAPDGITHRSLVWGFCWIDQ-----VEDAVEILREMGKRDHR 404

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK 233
            N+  Y  V     R ++VD A  +L+ M +  + PDE+
Sbjct: 405 INSSAYRLVINGLCRNKRVDIAIQVLEMMISGRYKPDEE 443



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 65/131 (49%), Gaps = 5/131 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K GL   A+  F Q+  +   PD++ +  ++ A    G   EAL+VF+ +  S 
Sbjct: 273 LINGLCKCGLVERAINFFVQMVSENCSPDIITYNTLLTALCKEGMVDEALQVFVLLSDSN 332

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            +P   TY  +I GL          + +A K   +M+ KG+ P+  T+ ++   F    +
Sbjct: 333 CSPGLITYNTVIDGLTRRG-----YMDEALKLYNQMIEKGIAPDGITHRSLVWGFCWIDQ 387

Query: 213 VDEARGLLQQM 223
           V++A  +L++M
Sbjct: 388 VEDAVEILREM 398



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 9/164 (5%)

Query: 56  PYDPFKKVVDEEPTDPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQ 112
           PY    ++V +     R L E+   M  EG   + V    + +  SK+G   +A  +   
Sbjct: 164 PYTILIELVWKHCGTVRAL-EVLEDMAIEGCYPDLVTYNSLVNFASKEGKYEDAALIIYN 222

Query: 113 IKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172
           I   G  P+ + + +++ +  S G   E   +   M  +   P   TY +LI GL     
Sbjct: 223 ILSHGMEPNAITYNSLLHSLCSCGLWDEVDEILAIMKKTSHPPTVVTYNILINGLCKCG- 281

Query: 173 GNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
               ++  A  + ++MV +   P+  TY  +  A  +   VDEA
Sbjct: 282 ----LVERAINFFVQMVSENCSPDIITYNTLLTALCKEGMVDEA 321



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/163 (21%), Positives = 68/163 (41%), Gaps = 13/163 (7%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + + K   T  AL++   +  +G  PD+V + +++   +  G+ ++A  +   +L+ G
Sbjct: 168 LIELVWKHCGTVRALEVLEDMAIEGCYPDLVTYNSLVNFASKEGKYEDAALIIYNILSHG 227

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PNA TY  L+  L +       +  +  + L  M      P   TY  +     +   
Sbjct: 228 MEPNAITYNSLLHSLCSCG-----LWDEVDEILAIMKKTSHPPTVVTYNILINGLCKCGL 282

Query: 213 VDEARGLLQQMKAKGFVPD--------EKAVKEALIDKRGQGF 247
           V+ A     QM ++   PD            KE ++D+  Q F
Sbjct: 283 VERAINFFVQMVSENCSPDIITYNTLLTALCKEGMVDEALQVF 325



 Score = 50.1 bits (118), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 60/144 (41%), Gaps = 7/144 (4%)

Query: 87  TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFM 146
           TNN  ++   L K G   EA +L   +     +P+    T +I      G+ + A RV  
Sbjct: 24  TNN--EILHNLCKKGSLMEATKLIDIMSRVNQIPNSTCSTNLIRGLVRIGRIERASRVLK 81

Query: 147 RMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEA 206
            M+ SG+ P+  TY +++ G         + L  A   L +M   G  P+  TY  +  +
Sbjct: 82  TMVMSGLVPDVITYNMMVGGFC-----KRRQLRSAIDLLEDMSLSGCPPDVITYNTIIRS 136

Query: 207 FVRAQKVDEARGLLQQMKAKGFVP 230
                K D+A    +    +G +P
Sbjct: 137 LFDNGKFDQAVEFWRGQLRRGCLP 160


>gi|449487696|ref|XP_004157755.1| PREDICTED: uncharacterized protein LOC101223774 [Cucumis sativus]
          Length = 1315

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 49/176 (27%), Positives = 83/176 (47%), Gaps = 13/176 (7%)

Query: 78   FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
            FHK+   GL+ N +    M   L K G   +A +L  ++   G  P+V  HT++I     
Sbjct: 889  FHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCK 948

Query: 135  AGQGKEALRVFMRMLAS-GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G  + A R+F++++ S    PN +TY  +I G         + L  A+     M  +G+
Sbjct: 949  KGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYC-----KEEKLSRAEMLFERMKEQGL 1003

Query: 194  RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID---KRGQG 246
             PN  TYT + +   +A    +A  L++ M  +GF P+      +++D   KRG+ 
Sbjct: 1004 VPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPN-TCTYNSIVDGLCKRGRA 1058



 Score = 66.6 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 65/136 (47%), Gaps = 4/136 (2%)

Query: 96   ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            A  +  L + A+  F ++   G  P+++ ++++I      G  K+A  +   M+ +G  P
Sbjct: 875  AFCEKSLVNRAVWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKP 934

Query: 156  NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
            N YT+  LI GL              + +L  +     +PN  TYTA+   + + +K+  
Sbjct: 935  NVYTHTSLIHGLCKKGWTERAF----RLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSR 990

Query: 216  ARGLLQQMKAKGFVPD 231
            A  L ++MK +G VP+
Sbjct: 991  AEMLFERMKEQGLVPN 1006



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 73/160 (45%), Gaps = 8/160 (5%)

Query: 77   IFHKMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
            +F +M+ +GL   TN    + D   K G   +A +L   + ++G  P+   + ++++   
Sbjct: 994  LFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLC 1053

Query: 134  SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
              G+ +EA ++      + +  +  TY +LI      AD N  ++     +L +M   G 
Sbjct: 1054 KRGRAEEAFKLLNTGFQNQIEADGVTYTILISEQCKRADMNQALV-----FLNKMFKVGF 1108

Query: 194  RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK 233
            +P+   YT +  AF R   + ++  L  ++   G  P ++
Sbjct: 1109 QPDIHLYTTLIAAFCRQNMMKDSEKLFDEVIKLGLAPTKE 1148



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/129 (27%), Positives = 61/129 (47%), Gaps = 5/129 (3%)

Query: 104  HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
            ++AL    ++   G  PD+  +T +I A+      K++ ++F  ++  G+AP   TY  +
Sbjct: 1094 NQALVFLNKMFKVGFQPDIHLYTTLIAAFCRQNMMKDSEKLFDEVIKLGLAPTKETYTSM 1153

Query: 164  IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
            I G         K +  A K+  +M   G  P++ +Y A+     +  ++DEAR L   M
Sbjct: 1154 ICGYC-----REKKVSLAVKFFQKMSDHGCAPDSISYGALISGLCKESRLDEARQLYDTM 1208

Query: 224  KAKGFVPDE 232
              KG  P E
Sbjct: 1209 IDKGLSPCE 1217


>gi|297746072|emb|CBI16128.3| unnamed protein product [Vitis vinifera]
          Length = 563

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 86/162 (53%), Gaps = 8/162 (4%)

Query: 73  NLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           N  E+F +MR  G+  N V    +   L ++    EA +L  ++K  G  P+++++  +I
Sbjct: 287 NAFELFDEMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLI 346

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
           + Y S G   +A  +F +M +SG +P+  TY +LI G + A   N+  + D  +   EM 
Sbjct: 347 DGYCSIGNLDKASSLFNQMKSSGQSPSLATYNILIAGFSEAK--NSAGVTDMVR---EME 401

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +G+ P+  TYT + +A VR+  +++A  +   M+  G V D
Sbjct: 402 ARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVAD 443



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 77/159 (48%), Gaps = 8/159 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +++F+KM    +  N      + +   K GL  + ++L+ ++K  G +P+V  + ++I  
Sbjct: 219 KQLFYKMGELDVVANQYTYTVLINGFFKMGLKKDGIELYEKMKLTGIVPNVYTYNSMICR 278

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
             + G+   A  +F  M   GVA N  TY  LI GL        ++L +A++ +  M   
Sbjct: 279 CCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGLCQ----ERRVL-EAERLMCRMKRD 333

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           G+ PN  +Y  + + +     +D+A  L  QMK+ G  P
Sbjct: 334 GLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSP 372



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 75/169 (44%), Gaps = 9/169 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E++ KM+  G+  N      M      DG  + A +LF +++++G   +VV +  +I   
Sbjct: 255 ELYEKMKLTGIVPNVYTYNSMICRCCNDGKLNNAFELFDEMRERGVACNVVTYNTLIGGL 314

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               +  EA R+  RM   G++PN  +Y  LI G  +  +     L  A     +M   G
Sbjct: 315 CQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGN-----LDKASSLFNQMKSSG 369

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
             P+  TY  +   F  A+       ++++M+A+G  P  K     L+D
Sbjct: 370 QSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPS-KVTYTILMD 417



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+  +M   GL+ N V    + D   K+G      QLF ++ +   + +   +T +I  +
Sbjct: 185 EVLGQMEEMGLSPNVVVYTTLIDGCCKNGDIERGKQLFYKMGELDVVANQYTYTVLINGF 244

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G  K+ + ++ +M  +G+ PN YTY  +I       DG    L +A +   EM  +G
Sbjct: 245 FKMGLKKDGIELYEKMKLTGIVPNVYTYNSMI--CRCCNDGK---LNNAFELFDEMRERG 299

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +  N  TY  +     + ++V EA  L+ +MK  G  P+
Sbjct: 300 VACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPN 338



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 8/167 (4%)

Query: 67  EPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVV 123
           E  +   + ++  +M   GL+ + V    + DAL +     +A Q+++ ++  G + D+ 
Sbjct: 386 EAKNSAGVTDMVREMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIY 445

Query: 124 AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQK 183
            +  +I      G  KEA ++F  +    + PN   Y  +I G     +G++     A +
Sbjct: 446 IYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYG--YCKEGSSY---RALR 500

Query: 184 YLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
            L EM   GM PN  +Y +  +   + +K  EA  LL+ M   G  P
Sbjct: 501 LLKEMGENGMVPNVASYNSTIQILCKDEKWTEAEVLLKDMIELGLKP 547



 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/120 (23%), Positives = 56/120 (46%), Gaps = 5/120 (4%)

Query: 112 QIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA 171
           +++ +G  P  V +T +++A   +   ++A +++  M  +G+  + Y Y VLI GL    
Sbjct: 399 EMEARGLSPSKVTYTILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVG 458

Query: 172 DGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           D     + +A K    +    ++PN   Y  +   + +      A  LL++M   G VP+
Sbjct: 459 D-----MKEASKLFKSLDEMHLKPNDVIYNTMIYGYCKEGSSYRALRLLKEMGENGMVPN 513



 Score = 41.2 bits (95), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 31/134 (23%), Positives = 56/134 (41%), Gaps = 8/134 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +I+  M   GL  +      +   L   G   EA +LF  + +    P+ V +  +I  Y
Sbjct: 430 QIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDEMHLKPNDVIYNTMIYGY 489

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G    ALR+   M  +G+ PN  +Y   I+ L            +A+  L +M+  G
Sbjct: 490 CKEGSSYRALRLLKEMGENGMVPNVASYNSTIQILCKDEKWT-----EAEVLLKDMIELG 544

Query: 193 MRPNAGTYTAVFEA 206
           ++P+   +  + +A
Sbjct: 545 LKPSISIWNMISKA 558


>gi|242050034|ref|XP_002462761.1| hypothetical protein SORBIDRAFT_02g031520 [Sorghum bicolor]
 gi|241926138|gb|EER99282.1| hypothetical protein SORBIDRAFT_02g031520 [Sorghum bicolor]
          Length = 535

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/133 (36%), Positives = 66/133 (49%), Gaps = 6/133 (4%)

Query: 99  KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAY 158
           K  L  EA  LF   +     PDVV +TAV+ A+  AGQ  EA RVF  M  SG+ PN Y
Sbjct: 218 KKRLASEAQALFDSCR-TVFTPDVVLYTAVVHAWCRAGQLDEAERVFAEMQQSGIMPNVY 276

Query: 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218
           TY  +I  +  A       +  AQ+ L +M+  G  PN  T+ A+  A V+A + ++   
Sbjct: 277 TYTAVIDAMYRAGQ-----VPRAQELLCQMIDSGCPPNTATFNAIMRAHVKAGRSEQVLQ 331

Query: 219 LLQQMKAKGFVPD 231
           +  QM      PD
Sbjct: 332 VHNQMHQLRCEPD 344



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 72/160 (45%), Gaps = 6/160 (3%)

Query: 75  QEIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +F +M+  G+  N      + DA+ + G    A +L  Q+ D G  P+     A++ A
Sbjct: 260 ERVFAEMQQSGIMPNVYTYTAVIDAMYRAGQVPRAQELLCQMIDSGCPPNTATFNAIMRA 319

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +  AG+ ++ L+V  +M      P+  TY  LI+       GN   L  A K L +M+ K
Sbjct: 320 HVKAGRSEQVLQVHNQMHQLRCEPDIITYNFLIETHCGKGQGN---LDAALKVLDKMIAK 376

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              P+  T+  +F   V    +  A  L ++M+     P+
Sbjct: 377 KCVPDCHTFNPMFRLLVVLGNIGAAHKLYEKMRELQCKPN 416



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 75/163 (46%), Gaps = 12/163 (7%)

Query: 75  QEIFHKMRTEGLTNNAVKMFDALS----KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           QE+  +M   G   N    F+A+     K G + + LQ+  Q+      PD++ +  +IE
Sbjct: 295 QELLCQMIDSGCPPNTAT-FNAIMRAHVKAGRSEQVLQVHNQMHQLRCEPDIITYNFLIE 353

Query: 131 AYASAGQGK--EALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
            +   GQG    AL+V  +M+A    P+ +T+  + + L     GN   +G A K   +M
Sbjct: 354 THCGKGQGNLDAALKVLDKMIAKKCVPDCHTFNPMFRLLVVL--GN---IGAAHKLYEKM 408

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
                +PN  TY  + + F + + +D    + + M  +G  P+
Sbjct: 409 RELQCKPNVVTYNCLLKLFNKEKSMDMVLRMKKNMDVEGIEPN 451



 Score = 43.5 bits (101), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 6/138 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           MF  L   G    A +L+ ++++    P+VV +  +++ +         LR+   M   G
Sbjct: 388 MFRLLVVLGNIGAAHKLYEKMRELQCKPNVVTYNCLLKLFNKEKSMDMVLRMKKNMDVEG 447

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV-GKGMRPNAGTYTAVFEAFVRAQ 211
           + PN +TYA LI+  A    GN K    A   L EM+  K  +P+      V     +A 
Sbjct: 448 IEPNMHTYAALIE--AFCGRGNWK---RAHATLKEMIEEKSFKPSKQVRDMVLVLLRKAG 502

Query: 212 KVDEARGLLQQMKAKGFV 229
           ++ +   L++ M  +GF+
Sbjct: 503 QLKKHEELVELMVDRGFI 520


>gi|302820627|ref|XP_002991980.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
 gi|300140222|gb|EFJ06948.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
          Length = 509

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 77/143 (53%), Gaps = 6/143 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K     +A  +  +++  G +PDVV +TA+I+A+   G+  EA  +F RM   G
Sbjct: 372 VIDGLCKADRLDDAYVVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERG 431

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            A +   Y +LI+G   AA      + +A   + EM G+G++PN  + + + +   +  +
Sbjct: 432 CALDVVAYNILIRGYCRAAK-----VDEAIAMIEEMAGRGIQPNVVSLSTIVDGLCKESR 486

Query: 213 VDEARGLLQQMKAKGFVPDEKAV 235
           V+EAR L+++M  +  +PD   V
Sbjct: 487 VEEARLLMEKMNFES-LPDSDPV 508



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 74/165 (44%), Gaps = 9/165 (5%)

Query: 80  KMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           +M+  G+T   V    +   L +   T +ALQ+F Q+ D    PD   +T VI       
Sbjct: 77  EMKAAGITPTIVTFGSLIRKLCELNFTDKALQIFHQMIDMKVKPDAFLYTVVIGHLCKIN 136

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196
           +   A   F RM+ SG  P+  TY VL+  L  A            +   EM+ KG  P 
Sbjct: 137 KLDLAASYFERMVQSGCLPDKVTYTVLVHSLFKACKWE-----QGHQIFEEMLSKGHSPE 191

Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
             TY  V   + +A ++D+A  L++++K  G  P   ++   LID
Sbjct: 192 LVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSP-SGSLYSTLID 235



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 73/157 (46%), Gaps = 10/157 (6%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F +M   G   + V    +  +L K     +  Q+F ++  KGH P++V +  V+  Y  
Sbjct: 145 FERMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHSPELVTYATVVNGYCK 204

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
           AG+  +AL +  R+  +G +P+   Y+ LI GL    D +     D  + L EM   G  
Sbjct: 205 AGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGL-CKHDRH-----DEARELFEMAA-GDV 257

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +   YT+      +A K+DEA+ +  +M   G  PD
Sbjct: 258 QDVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPD 294



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 75/170 (44%), Gaps = 33/170 (19%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K     EA +LF      G + DV+ +T+ I     AG+  EA  V ++M+ +G
Sbjct: 233 LIDGLCKHDRHDEARELFEMAA--GDVQDVIVYTSFISGLCKAGKLDEAKAVHVKMIEAG 290

Query: 153 VAPNAYTYAVLIKGLA----------------------------AAADGNAKI--LGDAQ 182
            AP+  +Y V+I  L                                DG  K   + +A 
Sbjct: 291 CAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLCKSRRVEEAC 350

Query: 183 KYLMEMVGKGMR-PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             L  M+  G R P+  TY+AV +   +A ++D+A  +LQ+M+  G VPD
Sbjct: 351 VILERMLETGDRAPSVVTYSAVIDGLCKADRLDDAYVVLQKMRRAGCVPD 400



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 66/142 (46%), Gaps = 10/142 (7%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKG-HMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
           + D L K     EA  +  ++ + G   P VV ++AVI+    A +  +A  V  +M  +
Sbjct: 336 LVDGLCKSRRVEEACVILERMLETGDRAPSVVTYSAVIDGLCKADRLDDAYVVLQKMRRA 395

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKI--LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
           G  P+  TY  +I       D   K+  L +A++    M  +G   +   Y  +   + R
Sbjct: 396 GCVPDVVTYTAII-------DAFCKVGRLDEARELFQRMHERGCALDVVAYNILIRGYCR 448

Query: 210 AQKVDEARGLLQQMKAKGFVPD 231
           A KVDEA  ++++M  +G  P+
Sbjct: 449 AAKVDEAIAMIEEMAGRGIQPN 470



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 5/127 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +A+ L  ++K  G  P +V   ++I          +AL++F +M+   V P+A+ Y V+I
Sbjct: 70  QAVNLLGEMKAAGITPTIVTFGSLIRKLCELNFTDKALQIFHQMIDMKVKPDAFLYTVVI 129

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
             L          L  A  Y   MV  G  P+  TYT +  +  +A K ++   + ++M 
Sbjct: 130 GHLC-----KINKLDLAASYFERMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEML 184

Query: 225 AKGFVPD 231
           +KG  P+
Sbjct: 185 SKGHSPE 191



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 60/146 (41%), Gaps = 5/146 (3%)

Query: 87  TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFM 146
           T     + +    DG   EA ++F         PD   +  +I  +  A Q  +A+ +  
Sbjct: 17  TYTCNSLLEVFVNDGCHREAYRVFKDELVTLFRPDDFTYGTLIRGFCKAEQIPQAVNLLG 76

Query: 147 RMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEA 206
            M A+G+ P   T+  LI+ L             A +   +M+   ++P+A  YT V   
Sbjct: 77  EMKAAGITPTIVTFGSLIRKLC-----ELNFTDKALQIFHQMIDMKVKPDAFLYTVVIGH 131

Query: 207 FVRAQKVDEARGLLQQMKAKGFVPDE 232
             +  K+D A    ++M   G +PD+
Sbjct: 132 LCKINKLDLAASYFERMVQSGCLPDK 157


>gi|399107204|gb|AFP20366.1| At1g03560-like protein, partial [Capsella grandiflora]
 gi|399107210|gb|AFP20369.1| At1g03560-like protein, partial [Capsella grandiflora]
          Length = 212

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 76/146 (52%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+G  +E   +F  +  KG  P+V  +T +I+ YA +G  ++A+R+  RM+  G  P
Sbjct: 28  GLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKP 87

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY+V++ GL      N ++  +A  Y       G+  N+  Y+++ +   +A ++DE
Sbjct: 88  DVVTYSVVVNGLCK----NGRV-EEALDYFQTCRFNGLAINSXFYSSLIDGLGKAGRIDE 142

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      ALID
Sbjct: 143 AERLFEEMSEKGCTRDSYCYN-ALID 167



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 72/134 (53%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ D+G  PDVV ++ V+      G+ +EAL  F     +G
Sbjct: 60  LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNG 119

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +A N+  Y+ LI GL     G A  + +A++   EM  KG   ++  Y A+ +A  +  K
Sbjct: 120 LAINSXFYSSLIDGL-----GKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGK 174

Query: 213 VDEARGLLQQMKAK 226
           VDEA  L ++M+ +
Sbjct: 175 VDEAMTLFKRMEEE 188



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 6/143 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
            + L+ ++ +KG        + VI      G+  E   VF  M+  G  PN   Y VLI 
Sbjct: 3   CVALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLID 62

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G A +       + DA + L  M+ +G +P+  TY+ V     +  +V+EA    Q  + 
Sbjct: 63  GYAKSGS-----VEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRF 117

Query: 226 KGFVPDEKAVKEALIDKRGQGFR 248
            G   +      +LID  G+  R
Sbjct: 118 NGLAIN-SXFYSSLIDGLGKAGR 139


>gi|399107214|gb|AFP20371.1| At1g03560-like protein, partial [Capsella grandiflora]
          Length = 212

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 76/146 (52%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+G  +E   +F  +  KG  P+V  +T +I+ YA +G  ++A+R+  RM+  G  P
Sbjct: 28  GLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIBEGFKP 87

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY+V++ GL      N ++  +A  Y       G+  N+  Y+++ +   +A ++DE
Sbjct: 88  DVVTYSVVVNGLCK----NGRV-EEALDYFQTCXFNGLAINSMFYSSLIDGLGKAGRIDE 142

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      ALID
Sbjct: 143 AERLFEEMSEKGCTRDSYCYN-ALID 167



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 72/134 (53%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ B+G  PDVV ++ V+      G+ +EAL  F     +G
Sbjct: 60  LIDGYAKSGSVEDAIRLLHRMIBEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCXFNG 119

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +A N+  Y+ LI GL     G A  + +A++   EM  KG   ++  Y A+ +A  +  K
Sbjct: 120 LAINSMFYSSLIDGL-----GKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGK 174

Query: 213 VDEARGLLQQMKAK 226
           VDEA  L ++M+ +
Sbjct: 175 VDEAMXLFKRMEEE 188



 Score = 53.9 bits (128), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 60/143 (41%), Gaps = 6/143 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
            + L+ ++ +KG        + VI      G+  E   VF  M+  G  PN   Y VLI 
Sbjct: 3   CVALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLID 62

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G A +       + DA + L  M+ +G +P+  TY+ V     +  +V+EA    Q    
Sbjct: 63  GYAKSGS-----VEDAIRLLHRMIBEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCXF 117

Query: 226 KGFVPDEKAVKEALIDKRGQGFR 248
            G   +      +LID  G+  R
Sbjct: 118 NGLAIN-SMFYSSLIDGLGKAGR 139


>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
 gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
          Length = 528

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 82/160 (51%), Gaps = 5/160 (3%)

Query: 72  RNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           R+  +IF +M           +     + G   EA++L  ++ D    PDVV +T ++ A
Sbjct: 231 RDAVDIFEEMSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSA 290

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +   G+  +A  +F +M+A+ ++P+  T+  L+ GL     G  + + DA + L E+  +
Sbjct: 291 FCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLC----GEGR-MEDALELLEEITRR 345

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G  P   TY  V + + +A +V +A  L+   +++GFVP+
Sbjct: 346 GCPPTIYTYNCVVDGYCKANQVRKAEELVADFRSRGFVPN 385



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 71/140 (50%), Gaps = 5/140 (3%)

Query: 92  KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
           K+   LSK     +A+Q+  ++    H+PD    T V+++     +  +A  +   ML  
Sbjct: 44  KLVHGLSKARRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHR 103

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           G+A NA TY+ L+ GL        + L +A   +  M  +G  P   TY ++   F RA+
Sbjct: 104 GMAANAITYSALVDGLC-----KCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRAR 158

Query: 212 KVDEARGLLQQMKAKGFVPD 231
           +VDEA G ++QM A+G  PD
Sbjct: 159 RVDEAHGFMEQMVAEGCHPD 178



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 74/160 (46%), Gaps = 10/160 (6%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F +M    L+ + V    + D L  +G   +AL+L  +I  +G  P +  +  V++ Y
Sbjct: 302 ELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGY 361

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             A Q ++A  +     + G  PN  TY +L+ G   A   +      A +YL ++  +G
Sbjct: 362 CKANQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTD-----QALQYLDQLNSEG 416

Query: 193 --MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
                +   Y  + +A  R  + D+A    ++M  +G+VP
Sbjct: 417 GPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVP 456



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 65/162 (40%), Gaps = 43/162 (26%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTA-----------------------------------VI 129
           EA     Q+  +G  PD++ +TA                                   VI
Sbjct: 162 EAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVI 221

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
           +    AG+ ++A+ +F  M     AP A TY  LI G   A D     + +A + L +MV
Sbjct: 222 DGLCKAGRLRDAVDIFEEM---SCAPTAITYNSLIGGYCRAGD-----MDEAIRLLGKMV 273

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
                P+  TYT +  AF +  ++D+A  L QQM A    PD
Sbjct: 274 DDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLSPD 315



 Score = 39.7 bits (91), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 29/132 (21%), Positives = 50/132 (37%), Gaps = 40/132 (30%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DAL +DG T +A+Q + ++  +G++P       V+ A   A Q ++A           
Sbjct: 429 ILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQA----------- 477

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
                                         + L EM+  G  P  GT  AV  A+ RA  
Sbjct: 478 -----------------------------HELLEEMIKYGHTPGPGTCDAVVSAYCRAGM 508

Query: 213 VDEARGLLQQMK 224
           + +A  L  +++
Sbjct: 509 IQKADELASELR 520


>gi|399107194|gb|AFP20361.1| At1g03560-like protein, partial [Capsella grandiflora]
 gi|399107216|gb|AFP20372.1| At1g03560-like protein, partial [Capsella grandiflora]
          Length = 212

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 76/146 (52%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+G  +E   +F  +  KG  P+V  +T +I+ YA +G  ++A+R+  RM+  G  P
Sbjct: 28  GLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKP 87

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY+V++ GL      N ++  +A  Y       G+  N+  Y+++ +   +A ++DE
Sbjct: 88  DVVTYSVVVNGLCK----NGRV-EEALDYFQTCXFNGLAINSMFYSSLIDGLGKAGRIDE 142

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      ALID
Sbjct: 143 AERLFEEMSEKGCTRDSYCYN-ALID 167



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 72/134 (53%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ D+G  PDVV ++ V+      G+ +EAL  F     +G
Sbjct: 60  LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCXFNG 119

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +A N+  Y+ LI GL     G A  + +A++   EM  KG   ++  Y A+ +A  +  K
Sbjct: 120 LAINSMFYSSLIDGL-----GKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGK 174

Query: 213 VDEARGLLQQMKAK 226
           VDEA  L ++M+ +
Sbjct: 175 VDEAMXLFKRMEEE 188



 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 60/143 (41%), Gaps = 6/143 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
            + L+ ++ +KG        + VI      G+  E   VF  M+  G  PN   Y VLI 
Sbjct: 3   CVALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLID 62

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G A +       + DA + L  M+ +G +P+  TY+ V     +  +V+EA    Q    
Sbjct: 63  GYAKSGS-----VEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCXF 117

Query: 226 KGFVPDEKAVKEALIDKRGQGFR 248
            G   +      +LID  G+  R
Sbjct: 118 NGLAIN-SMFYSSLIDGLGKAGR 139


>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
 gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
 gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 915

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 49/139 (35%), Positives = 70/139 (50%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M D+L K     EA  LF  ++ KG  P+VV +TA+I+ Y  AG+  EA  +  +ML+  
Sbjct: 503 MIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKN 562

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN+ T+  LI GL   ADG  K   +A     +MV  G++P   T T +    ++   
Sbjct: 563 CLPNSLTFNALIHGL--CADGKLK---EATLLEEKMVKIGLQPTVSTDTILIHRLLKDGD 617

Query: 213 VDEARGLLQQMKAKGFVPD 231
            D A    QQM + G  PD
Sbjct: 618 FDHAYSRFQQMLSSGTKPD 636



 Score = 73.6 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 43/167 (25%), Positives = 83/167 (49%), Gaps = 8/167 (4%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F++M  +G   N V    +   L       EA+ LF ++KD    P V  +T +I++ 
Sbjct: 274 KVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSL 333

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             + +  EAL +   M  +G+ PN +TY VLI  L +           A++ L +M+ KG
Sbjct: 334 CGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCK-----FEKARELLGQMLEKG 388

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
           + PN  TY A+   + +   +++A  +++ M+++   P+ +   E +
Sbjct: 389 LMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELI 435



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/140 (29%), Positives = 70/140 (50%), Gaps = 6/140 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D+L       +A +L  Q+ +KG MP+V+ + A+I  Y   G  ++A+ V   M +  
Sbjct: 364 LIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRK 423

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           ++PN  TY  LIKG   +       +  A   L +M+ + + P+  TY ++ +   R+  
Sbjct: 424 LSPNTRTYNELIKGYCKSN------VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGN 477

Query: 213 VDEARGLLQQMKAKGFVPDE 232
            D A  LL  M  +G VPD+
Sbjct: 478 FDSAYRLLSLMNDRGLVPDQ 497



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/128 (28%), Positives = 69/128 (53%), Gaps = 5/128 (3%)

Query: 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
           H+A+ +  ++ ++  +PDVV + ++I+    +G    A R+   M   G+ P+ +TY  +
Sbjct: 444 HKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSM 503

Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           I  L       +K + +A      +  KG+ PN   YTA+ + + +A KVDEA  +L++M
Sbjct: 504 IDSLC-----KSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKM 558

Query: 224 KAKGFVPD 231
            +K  +P+
Sbjct: 559 LSKNCLPN 566



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/132 (27%), Positives = 65/132 (49%), Gaps = 5/132 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + ++L++ GL  E  Q++ ++ +    P++  +  ++  Y   G  +EA +   +++ +G
Sbjct: 189 LLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAG 248

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+ +TY  LI G     D     L  A K   EM  KG R N   YT +      A++
Sbjct: 249 LDPDFFTYTSLIMGYCQRKD-----LDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARR 303

Query: 213 VDEARGLLQQMK 224
           +DEA  L  +MK
Sbjct: 304 IDEAMDLFVKMK 315



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 50/191 (26%), Positives = 77/191 (40%), Gaps = 33/191 (17%)

Query: 74  LQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           +++++ +M  + +  N     KM +   K G   EA Q  ++I + G  PD   +T++I 
Sbjct: 202 MKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIM 261

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA------AADGNAKILGD---- 180
            Y        A +VF  M   G   N   Y  LI GL        A D   K+  D    
Sbjct: 262 GYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFP 321

Query: 181 --------------------AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
                               A   + EM   G++PN  TYT + ++     K ++AR LL
Sbjct: 322 TVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELL 381

Query: 221 QQMKAKGFVPD 231
            QM  KG +P+
Sbjct: 382 GQMLEKGLMPN 392



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 5/138 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   + G    A +L + + D+G +PD   +T++I++   + + +EA  +F  +   G
Sbjct: 468 LIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKG 527

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V PN   Y  LI G   A       + +A   L +M+ K   PN+ T+ A+        K
Sbjct: 528 VNPNVVMYTALIDGYCKAGK-----VDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGK 582

Query: 213 VDEARGLLQQMKAKGFVP 230
           + EA  L ++M   G  P
Sbjct: 583 LKEATLLEEKMVKIGLQP 600



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/147 (27%), Positives = 66/147 (44%), Gaps = 7/147 (4%)

Query: 86  LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVF 145
           LT NA  +   L  DG   EA  L  ++   G  P V   T +I      G    A   F
Sbjct: 568 LTFNA--LIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRF 625

Query: 146 MRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFE 205
            +ML+SG  P+A+TY   I+            L DA+  + +M   G+ P+  TY+++ +
Sbjct: 626 QQMLSSGTKPDAHTYTTFIQTYCREGR-----LLDAEDMMAKMRENGVSPDLFTYSSLIK 680

Query: 206 AFVRAQKVDEARGLLQQMKAKGFVPDE 232
            +    + + A  +L++M+  G  P +
Sbjct: 681 GYGDLGQTNFAFDVLKRMRDTGCEPSQ 707



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 5/110 (4%)

Query: 125 HTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKY 184
           +  ++ + A  G   E  +V+M ML   V PN YTY  ++ G      GN +   +A +Y
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKL--GNVE---EANQY 240

Query: 185 LMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
           + ++V  G+ P+  TYT++   + + + +D A  +  +M  KG   +E A
Sbjct: 241 VSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVA 290



 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/185 (22%), Positives = 73/185 (39%), Gaps = 23/185 (12%)

Query: 74  LQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           L+E   K+  +   +    +   L KDG    A   F Q+   G  PD   +T  I+ Y 
Sbjct: 589 LEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYC 648

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G+  +A  +  +M  +GV+P+ +TY+ LIKG       N      A   L  M   G 
Sbjct: 649 REGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNF-----AFDVLKRMRDTGC 703

Query: 194 RPNAGTYTAVFE------------------AFVRAQKVDEARGLLQQMKAKGFVPDEKAV 235
            P+  T+ ++ +                  A     + D    LL++M      P+ K+ 
Sbjct: 704 EPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSY 763

Query: 236 KEALI 240
           ++ ++
Sbjct: 764 EKLIL 768


>gi|359477281|ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Vitis vinifera]
          Length = 898

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 81/184 (44%), Gaps = 12/184 (6%)

Query: 54  PPPYDPFKKVVDEEPTDPRNLQE---IFHKMRTEGLTNNAV---KMFDALSKDGLTHEAL 107
           PP    +  V+D      R L E   +F + ++ G+  N V    + D   K G   EA 
Sbjct: 646 PPTVVTYGSVIDGLAKIDR-LDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAY 704

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
            +  ++  KG  P+V     +++A   A +  EAL  F  M      PN  TY++LI GL
Sbjct: 705 LIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGL 764

Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
                 N   +     +  EM   G++PN  TYT +     +A  + EA GL  + KA G
Sbjct: 765 CRVRKFNKAFV-----FWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANG 819

Query: 228 FVPD 231
            +PD
Sbjct: 820 GIPD 823



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 84/192 (43%), Gaps = 43/192 (22%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           IF  M  +  T NAV    + D L K G   +A  L+ ++ D GH+P  + +T++I ++ 
Sbjct: 461 IFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFF 520

Query: 134 SAGQGKEALRVFMRMLASGVAPN-----------------------------------AY 158
             G+ ++  +++  M+ +G +P+                                   A 
Sbjct: 521 KCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDAR 580

Query: 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218
           +Y++LI GL  A   N     +  +    M  +G   +   Y AV + F ++ KV++A  
Sbjct: 581 SYSILIHGLVKAGLAN-----ETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQ 635

Query: 219 LLQQMKAKGFVP 230
           LL++MK KG  P
Sbjct: 636 LLEEMKVKGHPP 647



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 69/162 (42%), Gaps = 8/162 (4%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           EI   M   GL  N +    M D L K     EA  +F  + DK   P+ V  +++I+  
Sbjct: 425 EIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGL 484

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+  +A  ++ +ML  G  P A  Y  LI+              D  K   EMV  G
Sbjct: 485 GKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKE-----DGHKIYKEMVHTG 539

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
             P+        +   +A + ++ R L +++ A GF+PD ++
Sbjct: 540 CSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARS 581



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 79/160 (49%), Gaps = 12/160 (7%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F ++   G   +A     +   L K GL +E  +LF  +K++G + D  A+ AVI+ + 
Sbjct: 566 LFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFC 625

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKI--LGDAQKYLMEMVGK 191
            +G+  +A ++   M   G  P   TY  +I GL       AKI  L +A     E    
Sbjct: 626 KSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGL-------AKIDRLDEAYMLFEEAKSN 678

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G++ N   Y+++ + F +  ++DEA  +++++  KG  P+
Sbjct: 679 GIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPN 718



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 98/225 (43%), Gaps = 22/225 (9%)

Query: 14  PSPKRSLRITNTRVNATLQRSLSSSSD--QPTKKYVNTKSKLPPPYDPFKKVVD--EEPT 69
           PS   S+ +     N    R L  + D  Q  +K+     K  P +  +  ++    E  
Sbjct: 158 PSSNISIELV---ANCVKSRKLREAFDIIQTMRKF-----KFRPAFSAYTILIGALSEVR 209

Query: 70  DPRNLQEIFHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIKDKGHMPDVVAH 125
           +P  +  +FH+M+  G   N V +F  L    +++G    AL L  ++K      D+V +
Sbjct: 210 EPDPMLILFHQMQELGYEVN-VHLFTTLIRVFAREGRVDAALSLLDEMKSNSLDADIVLY 268

Query: 126 TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185
              I+ +  AG+   + + F  M + G+ P+  TY  +I  L       A  L +A +  
Sbjct: 269 NVCIDCFGKAGKVDMSWKFFHEMKSHGLMPDDVTYTSMIGVLC-----KANRLDEAVELF 323

Query: 186 MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
            ++      P A  Y  +   +  A K DEA GLL++ KAKG +P
Sbjct: 324 EQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIP 368



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 77/170 (45%), Gaps = 10/170 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           + FH+M++ GL  + V    M   L K     EA++LF Q++    +P   A+  +I  Y
Sbjct: 286 KFFHEMKSHGLMPDDVTYTSMIGVLCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGY 345

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
            SAG+  EA  +  R  A G  P+   Y  ++  L     G  + + +A +   EM  + 
Sbjct: 346 GSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCL-----GKKRRVEEALRIFEEM-KRD 399

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDK 242
             PN  TY  + +   R  K++ A  +   M+  G  P+   V   +ID+
Sbjct: 400 AVPNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVN-IMIDR 448



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 74/157 (47%), Gaps = 7/157 (4%)

Query: 77  IFHKMRTEGLTNNAVK--MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           IF +M+ + + N      + D L ++G  + AL++   ++  G  P+V+    +I+    
Sbjct: 392 IFEEMKRDAVPNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCK 451

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
           A + +EA  +F  M      PNA T++ LI GL     G    + DA     +M+  G  
Sbjct: 452 AQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGL-----GKCGRVDDAYSLYEKMLDCGHV 506

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           P A  YT++  +F +  + ++   + ++M   G  PD
Sbjct: 507 PGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPD 543



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 69/154 (44%), Gaps = 8/154 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           I  ++  +GLT N      + DAL K    +EAL  F  +KD    P+ + ++ +I    
Sbjct: 706 IMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLC 765

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
              +  +A   +  M   G+ PN  TY  +I GLA A  GN   + +A          G 
Sbjct: 766 RVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKA--GN---ILEASGLFSRFKANGG 820

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
            P++ +Y A+ E    A K  +A  L ++ + KG
Sbjct: 821 IPDSASYNAMIEGLSSANKAMDAYALFEETRLKG 854



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 5/132 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
             D   K G    + + F ++K  G MPD V +T++I     A +  EA+ +F ++  + 
Sbjct: 271 CIDCFGKAGKVDMSWKFFHEMKSHGLMPDDVTYTSMIGVLCKANRLDEAVELFEQLEQNR 330

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P AY Y  +I G      G+A    +A   L     KG  P+   Y  +     + ++
Sbjct: 331 KVPCAYAYNTMIMGY-----GSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRR 385

Query: 213 VDEARGLLQQMK 224
           V+EA  + ++MK
Sbjct: 386 VEEALRIFEEMK 397



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 75/186 (40%), Gaps = 9/186 (4%)

Query: 50  KSKLPPPYDPFKKVVDEEPTDPRNLQEIFHKMRTEGL---TNNAVKMFDALSKDGLTHEA 106
           K   P  Y+    V+    T+  +L+ I  +M   G    +N ++++     K     EA
Sbjct: 121 KVHCPEAYNSLLMVMARN-TEFDHLERILEEMSLSGFGPSSNISIELVANCVKSRKLREA 179

Query: 107 LQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKG 166
             +   ++     P   A+T +I A +   +    L +F +M   G   N + +  LI+ 
Sbjct: 180 FDIIQTMRKFKFRPAFSAYTILIGALSEVREPDPMLILFHQMQELGYEVNVHLFTTLIRV 239

Query: 167 LAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK 226
            A     +A     A   L EM    +  +   Y    + F +A KVD +     +MK+ 
Sbjct: 240 FAREGRVDA-----ALSLLDEMKSNSLDADIVLYNVCIDCFGKAGKVDMSWKFFHEMKSH 294

Query: 227 GFVPDE 232
           G +PD+
Sbjct: 295 GLMPDD 300



 Score = 43.1 bits (100), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 3/97 (3%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
            + +M+  GL  N +    M   L+K G   EA  LF++ K  G +PD  ++ A+IE  +
Sbjct: 776 FWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPDSASYNAMIEGLS 835

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAA 170
           SA +  +A  +F      G   +  T  VL+  L  A
Sbjct: 836 SANKAMDAYALFEETRLKGCNIHTKTCVVLLDALHKA 872


>gi|341605703|gb|AEK82954.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605705|gb|AEK82955.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605709|gb|AEK82957.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605813|gb|AEK83009.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605815|gb|AEK83010.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605817|gb|AEK83011.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605819|gb|AEK83012.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 76/146 (52%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+G  +E   +F  +  KG  P+V  +T +I+ YA +G  ++A+R+  RM+  G  P
Sbjct: 26  GLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKP 85

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY+V++ GL      N ++  +A  Y       G+  N+  Y+++ +   +A ++DE
Sbjct: 86  DVVTYSVVVNGLCK----NGRV-EEALDYFQTCXFNGLAINSMFYSSLIDGLGKAGRIDE 140

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      ALID
Sbjct: 141 AERLFEEMSEKGCTRDSYCYN-ALID 165



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 72/134 (53%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ D+G  PDVV ++ V+      G+ +EAL  F     +G
Sbjct: 58  LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCXFNG 117

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +A N+  Y+ LI GL     G A  + +A++   EM  KG   ++  Y A+ +A  +  K
Sbjct: 118 LAINSMFYSSLIDGL-----GKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGK 172

Query: 213 VDEARGLLQQMKAK 226
           VDEA  L ++M+ +
Sbjct: 173 VDEAMXLFKRMEEE 186



 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 60/143 (41%), Gaps = 6/143 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
            + L+ ++ +KG        + VI      G+  E   VF  M+  G  PN   Y VLI 
Sbjct: 1   CVALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLID 60

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G A +       + DA + L  M+ +G +P+  TY+ V     +  +V+EA    Q    
Sbjct: 61  GYAKSGS-----VEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCXF 115

Query: 226 KGFVPDEKAVKEALIDKRGQGFR 248
            G   +      +LID  G+  R
Sbjct: 116 NGLAIN-SMFYSSLIDGLGKAGR 137


>gi|255660844|gb|ACU25591.1| pentatricopeptide repeat-containing protein [Rhaphithamnus
           venustus]
          Length = 418

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 111/237 (46%), Gaps = 15/237 (6%)

Query: 2   AATAILRWLLHSPSPKRS-LRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPF 60
           +A+A+   +L +   +RS + + +  + A L+      + +  +  +  + K   P+D  
Sbjct: 47  SASAVFAAILETKGTQRSDIYVFSGLITAYLESGFIRDAIEFFR--LTREHKFWVPFDTC 104

Query: 61  KKVVDEEPTDPRNLQEI--FHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIK 114
           +KV+ E     +  + +  F+K   E     ++  F+ L     K+G    A  +F  I 
Sbjct: 105 RKVL-EHLMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDAIT 163

Query: 115 DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174
             G  P VV+   ++  Y   G   E  R+   M ASGV P+ YTY+VLI GL   +   
Sbjct: 164 KWGLRPSVVSFNTLMSGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESK-- 221

Query: 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              + +A +   EM+  G+ PN  T+T + +   +  +VD A  + +Q+ ++GF PD
Sbjct: 222 ---MDEANELFNEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQLLSQGFSPD 275



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 81/201 (40%), Gaps = 35/201 (17%)

Query: 63  VVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM 119
           +  E   D  N  E+F++M   GL  N V    + D   K+G    A++++ Q+  +G  
Sbjct: 216 LCKESKMDEAN--ELFNEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQLLSQGFS 273

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD------- 172
           PD++ +  +I      G  K+A  +   M    + P+  TY  LI G     D       
Sbjct: 274 PDLITYNTLIFGLCKKGDLKQARDLIDEMSMKELKPDKITYTTLIDGSCKEGDLETAFEY 333

Query: 173 ---------------GNAKILG--------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
                            A I G        DA+K L  M+  G++P+ GTYT +   F +
Sbjct: 334 RKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLRGMLSVGLKPDNGTYTMIINEFCK 393

Query: 210 AQKVDEARGLLQQMKAKGFVP 230
              V     LL++M   G VP
Sbjct: 394 KGDVKTGSKLLKEMXRDGHVP 414



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 77/158 (48%), Gaps = 6/158 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K+    EA +LF ++ D G +P+ V  T +I+ +   G+   A+ ++ ++L+ G
Sbjct: 212 LINGLCKESKMDEANELFNEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQLLSQG 271

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            +P+  TY  LI GL    D     L  A+  + EM  K ++P+  TYT + +   +   
Sbjct: 272 FSPDLITYNTLIFGLCKKGD-----LKQARDLIDEMSMKELKPDKITYTTLIDGSCKEGD 326

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGV 250
           ++ A    ++M  +    D+ A   ALI    Q  R V
Sbjct: 327 LETAFEYRKRMIKENIRLDDVAYT-ALISGLCQEGRSV 363


>gi|255561943|ref|XP_002521980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538784|gb|EEF40384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 584

 Score = 79.3 bits (194), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 66/124 (53%), Gaps = 5/124 (4%)

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
           ++  ++K +G +PDVV +  +I ++ S G+   AL +F  +L     P   TY +LI+  
Sbjct: 159 RVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEIFEELLKDNCEPTVITYTILIE-- 216

Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
           A   DG   +   A K L EM+ KG+ P+  TY A+     +   VD+A  LL+ + ++G
Sbjct: 217 ATILDGGIDV---AMKLLDEMLSKGLEPDTLTYNAIIRGMCKEMMVDKAFELLRSLSSRG 273

Query: 228 FVPD 231
             PD
Sbjct: 274 CKPD 277



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           EIF ++  +      +    + +A   DG    A++L  ++  KG  PD + + A+I   
Sbjct: 194 EIFEELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGM 253

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
                  +A  +   + + G  P+  TY +L++ L +    +     + +K + EM+  G
Sbjct: 254 CKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWS-----EGEKLISEMISIG 308

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +PN  T++ +     R  KV+EA  LL+ MK KG  PD
Sbjct: 309 CKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPD 347



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 84/178 (47%), Gaps = 11/178 (6%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E    M ++G   + V    +   L + G   +AL++F ++ + G  P+V ++  +  A 
Sbjct: 369 EFLEYMISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEVGCPPNVSSYNTLFSAL 428

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
            S+G    AL + +++L  G+ P+  TY  LI  L    DG   ++ +A + L++M    
Sbjct: 429 WSSGDRYRALEMILKLLNQGIDPDEITYNSLISCL--CRDG---MVDEAIELLVDMQSGR 483

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGV 250
            RPN  +Y  +     +  + ++A  +L  M  KG  P+E      ++   G GF G+
Sbjct: 484 YRPNVVSYNIILLGLCKVNRANDAIEVLAAMTEKGCQPNETTY---ILLIEGIGFSGL 538



 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 66/147 (44%), Gaps = 13/147 (8%)

Query: 112 QIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA 171
           +I ++   PDV A+ A+I  +  A Q + A RV  RM + G  P+  TY ++I    +  
Sbjct: 128 EILERYGKPDVFAYNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRG 187

Query: 172 DGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
                 L  A +   E++     P   TYT + EA +    +D A  LL +M +KG  PD
Sbjct: 188 K-----LDLALEIFEELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPD 242

Query: 232 --------EKAVKEALIDKRGQGFRGV 250
                       KE ++DK  +  R +
Sbjct: 243 TLTYNAIIRGMCKEMMVDKAFELLRSL 269



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 12/151 (7%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F K+   G   N      +F AL   G  + AL++  ++ ++G  PD + + ++I   
Sbjct: 404 EVFEKLDEVGCPPNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYNSLISCL 463

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G   EA+ + + M +    PN  +Y +++ GL      N     DA + L  M  KG
Sbjct: 464 CRDGMVDEAIELLVDMQSGRYRPNVVSYNIILLGLCKVNRAN-----DAIEVLAAMTEKG 518

Query: 193 MRPNAGTYTAVFEAF----VRAQKVDEARGL 219
            +PN  TY  + E      +RA+ ++ A  L
Sbjct: 519 CQPNETTYILLIEGIGFSGLRAEAMELANSL 549



 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/195 (21%), Positives = 79/195 (40%), Gaps = 43/195 (22%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKG-------------- 117
           +++  +M + G   N V    +   L +DG   EA+ L   +K+KG              
Sbjct: 298 EKLISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAG 357

Query: 118 ---------------------HMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
                                 +PD+V +  ++      G+  +AL VF ++   G  PN
Sbjct: 358 FCREGRLDLATEFLEYMISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEVGCPPN 417

Query: 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
             +Y  L   L ++ D        A + +++++ +G+ P+  TY ++     R   VDEA
Sbjct: 418 VSSYNTLFSALWSSGDRYR-----ALEMILKLLNQGIDPDEITYNSLISCLCRDGMVDEA 472

Query: 217 RGLLQQMKAKGFVPD 231
             LL  M++  + P+
Sbjct: 473 IELLVDMQSGRYRPN 487



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 80/195 (41%), Gaps = 31/195 (15%)

Query: 62  KVVDE------EPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDG-----LTHEAL--- 107
           K++DE      EP D      I   M  E + + A ++  +LS  G     +T+  L   
Sbjct: 229 KLLDEMLSKGLEP-DTLTYNAIIRGMCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRT 287

Query: 108 -----------QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
                      +L +++   G  P+VV H+ +I      G+ +EA+ +   M   G+ P+
Sbjct: 288 LLSRGKWSEGEKLISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPD 347

Query: 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
           AY Y  LI G           L  A ++L  M+  G  P+   Y  +     R  K D+A
Sbjct: 348 AYCYDPLIAGFCREGR-----LDLATEFLEYMISDGCLPDIVNYNTIMAGLCRTGKADQA 402

Query: 217 RGLLQQMKAKGFVPD 231
             + +++   G  P+
Sbjct: 403 LEVFEKLDEVGCPPN 417



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 54/99 (54%), Gaps = 6/99 (6%)

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             AG+  E+L     M+  G  P+      LIKG       N++ +G A + +ME++ + 
Sbjct: 80  CRAGKYNESLYFLECMVDKGYTPDVILCTKLIKGFF-----NSRNIGKATR-VMEILERY 133

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +P+   Y A+   F++A +++ A  +L +MK++GF+PD
Sbjct: 134 GKPDVFAYNALISGFIKANQLENANRVLDRMKSRGFLPD 172


>gi|399107192|gb|AFP20360.1| At1g03560-like protein, partial [Capsella grandiflora]
          Length = 212

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 76/146 (52%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+G  +E   +F  +  KG  P+V  +T +I+ YA +G  ++A+R+  RM+  G  P
Sbjct: 28  GLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKP 87

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY+V++ GL      N ++  +A  Y       G+  N+  Y+++ +   +A ++DE
Sbjct: 88  DVVTYSVVVNGLCK----NGRV-EEALDYFQTCRFNGLAINSXFYSSLIDGLGKAGRIDE 142

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      ALID
Sbjct: 143 AERLFEEMSEKGCTRDSYCYN-ALID 167



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 72/134 (53%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ D+G  PDVV ++ V+      G+ +EAL  F     +G
Sbjct: 60  LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNG 119

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +A N+  Y+ LI GL     G A  + +A++   EM  KG   ++  Y A+ +A  +  K
Sbjct: 120 LAINSXFYSSLIDGL-----GKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGK 174

Query: 213 VDEARGLLQQMKAK 226
           VDEA  L ++M+ +
Sbjct: 175 VDEAMXLFKRMEEE 188



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 6/143 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
            + L+ ++ +KG        + VI      G+  E   VF  M+  G  PN   Y VLI 
Sbjct: 3   CVALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLID 62

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G A +       + DA + L  M+ +G +P+  TY+ V     +  +V+EA    Q  + 
Sbjct: 63  GYAKSGS-----VEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRF 117

Query: 226 KGFVPDEKAVKEALIDKRGQGFR 248
            G   +      +LID  G+  R
Sbjct: 118 NGLAIN-SXFYSSLIDGLGKAGR 139


>gi|297837133|ref|XP_002886448.1| hypothetical protein ARALYDRAFT_475066 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297332289|gb|EFH62707.1| hypothetical protein ARALYDRAFT_475066 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 332

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 73/160 (45%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           Q +F +M  +G+  N +    M D     G   +A QL   + +    PDVV   A+I A
Sbjct: 100 QNLFTEMHDKGIFPNVLTYNCMIDGCCSYGKWTDAEQLLRDMIESNVDPDVVTFNALINA 159

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +   G+  EA  ++  ML   + P+  TY  LI G    +      L DA+     MV K
Sbjct: 160 FVKEGKISEAEELYREMLGRNIFPDTITYNSLIDGFCKHSR-----LDDAKHIFDLMVSK 214

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G  PN  T   +     RA++VD+   LL +M  +G VPD
Sbjct: 215 GGSPNVITINTLIGGCCRAKRVDDGIKLLHEMLRRGLVPD 254



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 73/139 (52%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L KDG   +A  LF ++ DKG  P+V+ +  +I+   S G+  +A ++   M+ S 
Sbjct: 86  IIDRLCKDGHHSKAQNLFTEMHDKGIFPNVLTYNCMIDGCCSYGKWTDAEQLLRDMIESN 145

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V P+  T+  LI             + +A++   EM+G+ + P+  TY ++ + F +  +
Sbjct: 146 VDPDVVTFNALINAFVKEGK-----ISEAEELYREMLGRNIFPDTITYNSLIDGFCKHSR 200

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +D+A+ +   M +KG  P+
Sbjct: 201 LDDAKHIFDLMVSKGGSPN 219



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 6/149 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + + K G T  AL L  ++ +     DVV +TA+I+     G   +A  +F  M   G
Sbjct: 51  IVNGMCKMGDTDSALNLLRKMDESHIKADVVIYTAIIDRLCKDGHHSKAQNLFTEMHDKG 110

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN  TY  +I G  +          DA++ L +M+   + P+  T+ A+  AFV+  K
Sbjct: 111 IFPNVLTYNCMIDGCCSYGKWT-----DAEQLLRDMIESNVDPDVVTFNALINAFVKEGK 165

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALID 241
           + EA  L ++M  +   PD      +LID
Sbjct: 166 ISEAEELYREMLGRNIFPD-TITYNSLID 193



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 70/134 (52%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +A  K+G   EA +L+ ++  +   PD + + ++I+ +    +  +A  +F  M++ G
Sbjct: 156 LINAFVKEGKISEAEELYREMLGRNIFPDTITYNSLIDGFCKHSRLDDAKHIFDLMVSKG 215

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            +PN  T   LI G        AK + D  K L EM+ +G+ P++ +Y  +   F +A  
Sbjct: 216 GSPNVITINTLIGGCC-----RAKRVDDGIKLLHEMLRRGLVPDSVSYNTLIHGFCQAGD 270

Query: 213 VDEARGLLQQMKAK 226
           ++ A+ L Q+M ++
Sbjct: 271 LNAAQDLFQEMISQ 284



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 5/117 (4%)

Query: 115 DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174
           +KG   DVVA   ++      G+  EA  +  RM+ +G  PN  TY  ++ G+    D +
Sbjct: 3   EKGCQHDVVAFNTLMNGLCREGRVLEAEALVDRMVENGHQPNEVTYGTIVNGMCKMGDTD 62

Query: 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +     A   L +M    ++ +   YTA+ +   +     +A+ L  +M  KG  P+
Sbjct: 63  S-----ALNLLRKMDESHIKADVVIYTAIIDRLCKDGHHSKAQNLFTEMHDKGIFPN 114


>gi|255584056|ref|XP_002532772.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527482|gb|EEF29611.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 647

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 9/168 (5%)

Query: 77  IFHKMRTEGLT---NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           ++H+M  +GL    +    +   L KDG   E   +F  +  KG   +V  +TA+I++ A
Sbjct: 306 LYHEMDEKGLEIPPHVYSLVIGGLCKDGKRVEGYTVFENMISKGCKANVAIYTALIDSNA 365

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G   EA+ +F RM   G+ P+  TY V++  L  +       L +A +Y+    GKG+
Sbjct: 366 KCGNMGEAMLLFKRMKKEGLEPDEVTYGVIVNSLCKSGR-----LDEALEYMEFCSGKGV 420

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
             NA  Y+++ +   ++ +VDEA  +  +M  KG  PD      ALID
Sbjct: 421 AVNAMFYSSLIDGLGKSGRVDEAERIFYEMVKKGCPPDSYCYN-ALID 467



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 72/152 (47%), Gaps = 10/152 (6%)

Query: 84  EGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140
           +G+  NA+    + D L K G   EA ++F ++  KG  PD   + A+I+A A  G+  E
Sbjct: 418 KGVAVNAMFYSSLIDGLGKSGRVDEAERIFYEMVKKGCPPDSYCYNALIDALAKCGKIDE 477

Query: 141 ALRVFMRMLASGVAPNAYTYAVLIKGL-AAAADGNAKILGDAQKYLMEMVGKGMRPNAGT 199
           AL +  RM   G     YTY +LI GL     +  A  L D       M+ KG+ P A  
Sbjct: 478 ALALSKRMEVDGCDQTVYTYTILITGLFREHRNEEALTLWDL------MIDKGITPTAAA 531

Query: 200 YTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + A+      + KV  A  +L +M   G +P+
Sbjct: 532 FRALSTGLCLSGKVARACKILDEMAPMGVIPE 563



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 71/163 (43%), Gaps = 8/163 (4%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M+ EGL  + V    + ++L K G   EAL+       KG   + + ++++I+   
Sbjct: 376 LFKRMKKEGLEPDEVTYGVIVNSLCKSGRLDEALEYMEFCSGKGVAVNAMFYSSLIDGLG 435

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            +G+  EA R+F  M+  G  P++Y Y  LI  LA         + +A      M   G 
Sbjct: 436 KSGRVDEAERIFYEMVKKGCPPDSYCYNALIDALAKCGK-----IDEALALSKRMEVDGC 490

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK 236
                TYT +     R  + +EA  L   M  KG  P   A +
Sbjct: 491 DQTVYTYTILITGLFREHRNEEALTLWDLMIDKGITPTAAAFR 533



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 72/142 (50%), Gaps = 5/142 (3%)

Query: 91  VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           V + D L+ +G+      +F++ K+ G +  V +  ++I+++ + G  +E L V+ RM  
Sbjct: 148 VSLIDVLATNGVLDSVKSVFSKFKEMGLIMTVYSSNSLIKSFGNLGMVEEVLWVWRRMKE 207

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
           +G+ P+ ++Y  L+ GL      N+K +  A++    M    + P+  TY  + + +   
Sbjct: 208 NGIEPSLFSYNFLVNGLV-----NSKFIESAERVFEVMENGKIGPDVVTYNTMIKGYCEV 262

Query: 211 QKVDEARGLLQQMKAKGFVPDE 232
            K  +A   L+ M+ +   PD+
Sbjct: 263 GKTRKAFEKLKAMELRNVAPDK 284



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/189 (21%), Positives = 76/189 (40%), Gaps = 33/189 (17%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           ++ +M+  G+  +      + + L        A ++F  +++    PDVV +  +I+ Y 
Sbjct: 201 VWRRMKENGIEPSLFSYNFLVNGLVNSKFIESAERVFEVMENGKIGPDVVTYNTMIKGYC 260

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK----------------- 176
             G+ ++A      M    VAP+  TY  LI+   A  D ++                  
Sbjct: 261 EVGKTRKAFEKLKAMELRNVAPDKITYMTLIQACYAEGDFDSCLGLYHEMDEKGLEIPPH 320

Query: 177 ----ILGDAQK---------YLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
               ++G   K             M+ KG + N   YTA+ ++  +   + EA  L ++M
Sbjct: 321 VYSLVIGGLCKDGKRVEGYTVFENMISKGCKANVAIYTALIDSNAKCGNMGEAMLLFKRM 380

Query: 224 KAKGFVPDE 232
           K +G  PDE
Sbjct: 381 KKEGLEPDE 389



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 72/162 (44%), Gaps = 14/162 (8%)

Query: 73  NLQEIFHKMRTEGL------TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           +++ +F K +  GL      +N+ +K F  L   G+  E L ++ ++K+ G  P + ++ 
Sbjct: 162 SVKSVFSKFKEMGLIMTVYSSNSLIKSFGNL---GMVEEVLWVWRRMKENGIEPSLFSYN 218

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
            ++    ++   + A RVF  M    + P+  TY  +IKG      G  +    A + L 
Sbjct: 219 FLVNGLVNSKFIESAERVFEVMENGKIGPDVVTYNTMIKGYCEV--GKTR---KAFEKLK 273

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
            M  + + P+  TY  + +A       D   GL  +M  KG 
Sbjct: 274 AMELRNVAPDKITYMTLIQACYAEGDFDSCLGLYHEMDEKGL 315


>gi|358347566|ref|XP_003637827.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503762|gb|AES84965.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 74/139 (53%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D+  KD L  +A  L++++  K   P+VV   ++I  +   GQ KEA+ +   M  + 
Sbjct: 200 IIDSFCKDKLVIDAYDLYSEMIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNN 259

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V PN YT+ +LI GL    +G  K    A   L  M+ +G+ PN  TYT++ + +   ++
Sbjct: 260 VNPNVYTFNILIDGL--CKEGEVK---KATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKE 314

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V++A+ +   +  +G  P+
Sbjct: 315 VNKAKHVFNTISLRGVTPN 333



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 80/173 (46%), Gaps = 15/173 (8%)

Query: 62  KVVDEEPTDPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGH 118
           K+VDE         ++F +M  + +T N V    + D L K G   +   L  +I ++G 
Sbjct: 348 KMVDEAV-------KLFKEMHLKNMTPNTVTYSSLIDGLCKSGRISDVWDLIDEINNRGQ 400

Query: 119 MPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKIL 178
             +++ + +++       Q  +A+ +  +M   G+ P+  TY  L+ GL      N + L
Sbjct: 401 PANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDMSTYTTLVDGLCK----NGR-L 455

Query: 179 GDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            DAQ+   +++ KG   N   YT +     +    DEA  LL QM+  G +PD
Sbjct: 456 KDAQRIYQDLLCKGYPLNIRMYTVMINGLCKEGFFDEALSLLSQMEDNGCMPD 508



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 72/135 (53%), Gaps = 5/135 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K+G   +A  + + +  +G  P+VV +T++++ Y    +  +A  VF  +   G
Sbjct: 270 LIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRG 329

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V PN ++Y+V+I GL        K++ +A K   EM  K M PN  TY+++ +   ++ +
Sbjct: 330 VTPNVHSYSVMINGLCK-----NKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKSGR 384

Query: 213 VDEARGLLQQMKAKG 227
           + +   L+ ++  +G
Sbjct: 385 ISDVWDLIDEINNRG 399



 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K+    +A+ L  ++KD+G  PD+  +T +++     G+ K+A R++  +L  G
Sbjct: 410 LLNGLCKNHQVDKAIALLTKMKDEGIQPDMSTYTTLVDGLCKNGRLKDAQRIYQDLLCKG 469

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
              N   Y V+I GL            +A   L +M   G  P+A TY  +  A  +  K
Sbjct: 470 YPLNIRMYTVMINGLCKEG-----FFDEALSLLSQMEDNGCMPDAVTYETLISALFKNNK 524

Query: 213 VDEARGLLQQMKAK 226
             +A  LL++M A+
Sbjct: 525 NGKAVKLLREMIAR 538



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 58/128 (45%), Gaps = 8/128 (6%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A  + A+I   G+ PD V    ++      G+ KEAL     ++      +  +Y  LI 
Sbjct: 107 AFSMVAKILKLGYQPDTVTVNTLLRGLCLNGKVKEALNFHDHVIRKRFHLDQVSYGTLIN 166

Query: 166 GLAAAADGNA--KILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           GL  + +  A  ++L   +  L+      +RP+   YTA+ ++F + + V +A  L  +M
Sbjct: 167 GLCKSGETRAALQLLRKIEGLLL------VRPDVIMYTAIIDSFCKDKLVIDAYDLYSEM 220

Query: 224 KAKGFVPD 231
             K   P+
Sbjct: 221 IVKKIYPN 228


>gi|224138172|ref|XP_002326536.1| predicted protein [Populus trichocarpa]
 gi|222833858|gb|EEE72335.1| predicted protein [Populus trichocarpa]
          Length = 697

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 8/168 (4%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           +P    +++ KM   G   + V +    D  SK G   +AL LF ++ ++G   D  A T
Sbjct: 521 NPMKAWKLYRKMPKLGCKPDNVTLTVLVDMFSKRGKMSKALNLFKEMAEEGLSRDEFAFT 580

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
           A+I+ Y   G  K A  ++ +M  + V PN  TY  L+ G         K L  A   + 
Sbjct: 581 AIIDGYCRVGNVKRAWSMYKKMKRNNVTPNVKTYTCLVDGFCK-----LKRLDMATMLID 635

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
           +M    + P+  TYTA+   + R + +D A  +  +MK KG +PD  A
Sbjct: 636 DMKRNSVTPDVKTYTALIAGYQRIENIDRAYEVFDEMKKKGTLPDHIA 683



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 84/199 (42%), Gaps = 35/199 (17%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           + H+MR  GL  + +    +     + G   EAL+ F  +   G  PD++    +++ Y 
Sbjct: 387 LVHEMRKNGLVPDYIIYISLIREYCRKGCLKEALKNFYTMLQDGLQPDIITCNHIVDQYC 446

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA------------------------- 168
           S GQ +EAL    +M    + PN+YTY+V+I  L                          
Sbjct: 447 SRGQFEEALIYINQMKDQNILPNSYTYSVIINWLCKYQAVEKAWEVLPVMFKDNIFPSVI 506

Query: 169 ---AAADGNAKILGD---AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
                 DG AK   +   A K   +M   G +P+  T T + + F +  K+ +A  L ++
Sbjct: 507 HYTTIMDGYAKQFKNPMKAWKLYRKMPKLGCKPDNVTLTVLVDMFSKRGKMSKALNLFKE 566

Query: 223 MKAKGFVPDEKAVKEALID 241
           M  +G   DE A   A+ID
Sbjct: 567 MAEEGLSRDEFAFT-AIID 584



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 72/169 (42%), Gaps = 24/169 (14%)

Query: 81  MRTEGLTNNAVKMFDALSKDGLTHEAL-------------------QLFAQIKDKGHMPD 121
           +RT+GL N+ +  F  LS  G  H+ +                    L  +++  G +PD
Sbjct: 340 LRTKGLVNDCLNFFHELSAKGYKHDLISYSTLIHGFLKGHNVKSANNLVHEMRKNGLVPD 399

Query: 122 VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDA 181
            + + ++I  Y   G  KEAL+ F  ML  G+ P+  T   ++    +          +A
Sbjct: 400 YIIYISLIREYCRKGCLKEALKNFYTMLQDGLQPDIITCNHIVDQYCSRGQ-----FEEA 454

Query: 182 QKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
             Y+ +M  + + PN+ TY+ +     + Q V++A  +L  M      P
Sbjct: 455 LIYINQMKDQNILPNSYTYSVIINWLCKYQAVEKAWEVLPVMFKDNIFP 503



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/139 (21%), Positives = 63/139 (45%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +     + G   EAL+L  ++KD+G  PD+ +++ ++ A+ + G  +  + +   M    
Sbjct: 266 LIQGFCQKGRPDEALKLLEEMKDEGISPDIYSYSILVNAFCTEGDIESGMNLIQEMEHCN 325

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P       ++ GL         ++ D   +  E+  KG + +  +Y+ +   F++   
Sbjct: 326 KKPPLVCCTSVLMGLRTKG-----LVNDCLNFFHELSAKGYKHDLISYSTLIHGFLKGHN 380

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V  A  L+ +M+  G VPD
Sbjct: 381 VKSANNLVHEMRKNGLVPD 399



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/143 (23%), Positives = 60/143 (41%), Gaps = 5/143 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +A  +  ++++KG  P VV +   I      G  ++A      + +S    N Y Y  LI
Sbjct: 208 QASLILEEMEEKGENPTVVTYGVYIHGLCRVGSIEDAWNKIQDLRSSNQPLNIYCYNALI 267

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           +G       +     +A K L EM  +G+ P+  +Y+ +  AF     ++    L+Q+M+
Sbjct: 268 QGFCQKGRPD-----EALKLLEEMKDEGISPDIYSYSILVNAFCTEGDIESGMNLIQEME 322

Query: 225 AKGFVPDEKAVKEALIDKRGQGF 247
                P        L+  R +G 
Sbjct: 323 HCNKKPPLVCCTSVLMGLRTKGL 345



 Score = 45.8 bits (107), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 61/144 (42%), Gaps = 7/144 (4%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALR-VFMRMLASGVAPNAYTYAVL 163
           +A  +F Q K  G   ++ +   +++  A  G   EA+R +F  +  SG +PN YTY ++
Sbjct: 133 DAKDVFMQAKKIGVELNISSCNFLLKCLAE-GDKLEAVRSLFDDLKNSGPSPNVYTYTIM 191

Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           I        G    +  A   L EM  KG  P   TY        R   +++A   +Q +
Sbjct: 192 INFYCKERHGQNIDMEQASLILEEMEEKGENPTVVTYGVYIHGLCRVGSIEDAWNKIQDL 251

Query: 224 KAKGFVPDEKAVKEALIDKRGQGF 247
           ++    P       ALI    QGF
Sbjct: 252 RSSN-QPLNIYCYNALI----QGF 270


>gi|255660886|gb|ACU25612.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
          Length = 484

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 12/168 (7%)

Query: 78  FHKMRTEGL-----TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           F+KM +EG+     T N   M       G    A + F  +K +   PDVV +  +I  Y
Sbjct: 138 FNKMLSEGIEPTRHTFNV--MIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGY 195

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               + +EA + F+ M    + P   TY  LIKG  +        + DA + + EM G G
Sbjct: 196 YRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQ-----VDDALRLVEEMKGFG 250

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
           ++PNA TY+ +      A+K+ EAR +L++M  K   P + ++   LI
Sbjct: 251 IKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLI 298



 Score = 72.8 bits (177), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 83/171 (48%), Gaps = 30/171 (17%)

Query: 91  VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           V M D+  K+G+  E++++F ++++ G    + ++ A+ +     G+   A R F +ML+
Sbjct: 84  VMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLS 143

Query: 151 SGVAPNAYTYAVLIKGLAAAA----------------------------DGNAKI--LGD 180
            G+ P  +T+ V+I G   +                             +G  ++  + +
Sbjct: 144 EGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEE 203

Query: 181 AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           A+KY +EM G+ + P   TYT + + +V   +VD+A  L+++MK  G  P+
Sbjct: 204 AEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPN 254



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 87/181 (48%), Gaps = 13/181 (7%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
            F  M++  ++ + V    M +   +     EA + F ++K +   P VV +T +I+ Y 
Sbjct: 172 FFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYV 231

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
           S  Q  +ALR+   M   G+ PNA TY+ L+ GL      NA+ + +A+  L EM+ K +
Sbjct: 232 SVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLC-----NAEKMSEARVILKEMMDKYL 286

Query: 194 RPNAGT-YTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID---KRGQGFRG 249
            P   + +  +  +  ++  +D A  +L+ M  +  VP E      LI+   K GQ  + 
Sbjct: 287 APTDNSIFMRLISSHCKSGNLDAAADVLKAM-IRLSVPTEAGHYGXLIENFCKXGQYDKA 345

Query: 250 V 250
           V
Sbjct: 346 V 346


>gi|255660880|gb|ACU25609.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
          Length = 484

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 12/168 (7%)

Query: 78  FHKMRTEGL-----TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           F+KM +EG+     T N   M       G    A + F  +K +   PDVV +  +I  Y
Sbjct: 138 FNKMLSEGIEPTRHTFNV--MIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGY 195

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               + +EA + F+ M    + P   TY  LIKG  +        + DA + + EM G G
Sbjct: 196 YRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQ-----VDDALRLVEEMKGFG 250

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
           ++PNA TY+ +      A+K+ EAR +L++M  K   P + ++   LI
Sbjct: 251 IKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLI 298



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 82/171 (47%), Gaps = 30/171 (17%)

Query: 91  VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           V M D+  K+G+  E++++F ++++ G    + ++  + +     G+   A R F +ML+
Sbjct: 84  VMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNXLFKVILRRGRYMMAKRYFNKMLS 143

Query: 151 SGVAPNAYTYAVLIKGLAAAA----------------------------DGNAKI--LGD 180
            G+ P  +T+ V+I G   +                             +G  ++  + +
Sbjct: 144 EGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEE 203

Query: 181 AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           A+KY +EM G+ + P   TYT + + +V   +VD+A  L+++MK  G  P+
Sbjct: 204 AEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPN 254



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 87/181 (48%), Gaps = 13/181 (7%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
            F  M++  ++ + V    M +   +     EA + F ++K +   P VV +T +I+ Y 
Sbjct: 172 FFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYV 231

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
           S  Q  +ALR+   M   G+ PNA TY+ L+ GL      NA+ + +A+  L EM+ K +
Sbjct: 232 SVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLC-----NAEKMSEARVILKEMMDKYL 286

Query: 194 RPNAGT-YTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID---KRGQGFRG 249
            P   + +  +  +  ++  +D A  +L+ M  +  VP E      LI+   K GQ  + 
Sbjct: 287 APTDNSIFMRLISSHCKSGNLDAAADVLKAM-IRLSVPTEAGHYGXLIENFCKXGQYDKA 345

Query: 250 V 250
           V
Sbjct: 346 V 346


>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
 gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
          Length = 751

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 73/148 (49%), Gaps = 7/148 (4%)

Query: 84  EGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALR 143
           +G+T N   + +   K G  H+AL L +++   G  PDVV +T++I     AG    A+ 
Sbjct: 307 DGVTYNT--LVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAME 364

Query: 144 VFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAV 203
            F +M   G+ PN  TY  LI G +         + +A +   EM+  G  P   TY A+
Sbjct: 365 FFDQMHVRGLRPNGVTYTSLINGFSQKG-----FMDEAYRIWDEMIRSGFPPTIVTYNAL 419

Query: 204 FEAFVRAQKVDEARGLLQQMKAKGFVPD 231
                 + +++EA GLL+ M+ KG  PD
Sbjct: 420 LNGHCVSGRMEEAIGLLRGMEGKGLSPD 447



 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 70/131 (53%), Gaps = 5/131 (3%)

Query: 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
           G   EA+ L   ++ KG  PDVV+++ +I  +    +   A ++   M+  GV+P+A TY
Sbjct: 427 GRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITY 486

Query: 161 AVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
           + LI+GL        + L +A     EM+ K + P+  TYT++   + +   ++EA  L 
Sbjct: 487 SSLIQGLC-----EQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLH 541

Query: 221 QQMKAKGFVPD 231
            +M  KGF+PD
Sbjct: 542 DEMIKKGFLPD 552



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 79/165 (47%), Gaps = 11/165 (6%)

Query: 72  RNLQEIFHKMRT---EGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAH 125
           + + E F  +R+   EGL  N +    + + L + G   E   + A++  KG  PD V +
Sbjct: 252 KRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTY 311

Query: 126 TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185
             ++  Y   G   +AL +   ML +G+ P+  TY  LI  +  A +     L  A ++ 
Sbjct: 312 NTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGN-----LNRAMEFF 366

Query: 186 MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
            +M  +G+RPN  TYT++   F +   +DEA  +  +M   GF P
Sbjct: 367 DQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPP 411



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/184 (26%), Positives = 81/184 (44%), Gaps = 35/184 (19%)

Query: 83  TEGLTNNAVKMFDALSKD----GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQG 138
           T  + N++  +FD + K         +AL +    K  G MP V+++ A++++     + 
Sbjct: 124 TYFMCNSSSAVFDLVVKSCSYLNFIEKALNIVDLAKLNGFMPGVLSYNAILDSIVRCRKP 183

Query: 139 K-EALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD------------------------- 172
              A +V+  M+ASGV+ N ++Y +LI+G  AA +                         
Sbjct: 184 VIFAEKVYREMIASGVSLNVFSYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNT 243

Query: 173 -----GNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
                   K + +A K L  M  +G+ PN  TY  V     R  +++E  G+L +M  KG
Sbjct: 244 VIGAYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKG 303

Query: 228 FVPD 231
           F PD
Sbjct: 304 FAPD 307



 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 16/178 (8%)

Query: 69  TDPRNLQE---IFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDV 122
            + R L E   +F +M  + L  +      + +   K+G  +EAL L  ++  KG +PD 
Sbjct: 494 CEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDT 553

Query: 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI--------KGLAAAADGN 174
           V +  +I       + +EA R+ +++      PN  TY  LI        K + A   G 
Sbjct: 554 VTYNVLINGLNKQARTREAKRLLLKLFYDESIPNGITYDTLIESCSDIEFKSVVALIKGF 613

Query: 175 AK--ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
               ++ +A +    M+ +  +PN   Y  +     R   V +A  L ++M   GF+P
Sbjct: 614 CMKGLMNEADQVFESMIKRNQKPNEAVYNVIIHGHCRDGNVHKAHKLYKEMVDFGFIP 671



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 82/178 (46%), Gaps = 9/178 (5%)

Query: 80  KMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           +M  +G++ +A+    +   L +    +EA  LF ++ +K  +PD   +T++I  Y   G
Sbjct: 473 EMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTYTSLINGYCKEG 532

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196
              EAL +   M+  G  P+  TY VLI GL   A        +A++ L+++      PN
Sbjct: 533 DLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTR-----EAKRLLLKLFYDESIPN 587

Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINIL 254
             TY  + E+     +      L++    KG + +   V E++I +  +    V N++
Sbjct: 588 GITYDTLIES-CSDIEFKSVVALIKGFCMKGLMNEADQVFESMIKRNQKPNEAVYNVI 644



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 57/127 (44%), Gaps = 5/127 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA +L   +  +G  P+++ +  VI      G+ +E   V   M   G AP+  TY  L+
Sbjct: 256 EAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLV 315

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            G     + +  ++  +     EM+  G+ P+  TYT++     +A  ++ A     QM 
Sbjct: 316 NGYCKVGNFHQALVLHS-----EMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMH 370

Query: 225 AKGFVPD 231
            +G  P+
Sbjct: 371 VRGLRPN 377


>gi|224130936|ref|XP_002320961.1| predicted protein [Populus trichocarpa]
 gi|222861734|gb|EEE99276.1| predicted protein [Populus trichocarpa]
          Length = 474

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 81/160 (50%), Gaps = 12/160 (7%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           ++  M   GL  N      + ++LSK G  +EAL    Q++  G +P+VV ++ +I+ Y 
Sbjct: 154 LYDDMLVRGLQPNVYTYNVIINSLSKSGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYC 213

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKI--LGDAQKYLMEMVGK 191
             GQ  EA  VF  M++ G  PN YTY  L+       +G  KI  + +A + L E + K
Sbjct: 214 LRGQMDEARSVFDLMVSKGCTPNVYTYTSLM-------NGYCKIERIEEAVQLLDETLRK 266

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G+ P+  T+T +     RA +   A+ L + + A G  P+
Sbjct: 267 GLVPDIVTFTTIISGLCRAGRPLAAQQLFRYICAHGHTPN 306



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 79/164 (48%), Gaps = 8/164 (4%)

Query: 71  PRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P   Q++F  +   G T N +    + D L K G   EA  LF +++     P++V +T 
Sbjct: 288 PLAAQQLFRYICAHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTI 347

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           +I++    G+ K+   +F R++  G+ PN YTY  L+  L         ++ +A K   +
Sbjct: 348 LIDSLCKCGKIKDGKELFSRLIDEGLKPNVYTYTALVGALCKEG-----LIIEAHKLFRK 402

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           M   G  P+   Y  + + F++ +    AR L+++M  +GF  D
Sbjct: 403 MEEDGCTPDKCAYNVIIQGFLQHKDPSMARQLVEEMVNRGFSAD 446



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L  +G   + + L+  +  +G  P+V  +  +I + + +G+  EAL    +M   G
Sbjct: 138 LLNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIINSLSKSGKANEALGFLKQMEKVG 197

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN   Y+ LI G           + +A+     MV KG  PN  TYT++   + + ++
Sbjct: 198 CVPNVVNYSTLIDGYCLRGQ-----MDEARSVFDLMVSKGCTPNVYTYTSLMNGYCKIER 252

Query: 213 VDEARGLLQQMKAKGFVPD 231
           ++EA  LL +   KG VPD
Sbjct: 253 IEEAVQLLDETLRKGLVPD 271



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 81/193 (41%), Gaps = 33/193 (17%)

Query: 75  QEIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +F  M ++G T N      + +   K     EA+QL  +   KG +PD+V  T +I  
Sbjct: 222 RSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISG 281

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA----------------------- 168
              AG+   A ++F  + A G  PN  TY VL+ GL                        
Sbjct: 282 LCRAGRPLAAQQLFRYICAHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPN 341

Query: 169 -----AAADGNAKI--LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221
                   D   K   + D ++    ++ +G++PN  TYTA+  A  +   + EA  L +
Sbjct: 342 LVIYTILIDSLCKCGKIKDGKELFSRLIDEGLKPNVYTYTALVGALCKEGLIIEAHKLFR 401

Query: 222 QMKAKGFVPDEKA 234
           +M+  G  PD+ A
Sbjct: 402 KMEEDGCTPDKCA 414



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 61/126 (48%), Gaps = 5/126 (3%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
            L + ++I   G  P +V  T ++      G+  + + ++  ML  G+ PN YTY V+I 
Sbjct: 116 GLSVLSKILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIIN 175

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
            L+ +   N     +A  +L +M   G  PN   Y+ + + +    ++DEAR +   M +
Sbjct: 176 SLSKSGKAN-----EALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEARSVFDLMVS 230

Query: 226 KGFVPD 231
           KG  P+
Sbjct: 231 KGCTPN 236


>gi|222422989|dbj|BAH19478.1| AT2G06000 [Arabidopsis thaliana]
          Length = 536

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 81/160 (50%), Gaps = 7/160 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G    A ++  ++   G  PDVV  T++I+ Y   GQ  +  R++  M A G
Sbjct: 318 LVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARG 377

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PNA+TY++LI  L      N   L  A++ L ++  K + P    Y  V + F +A K
Sbjct: 378 MFPNAFTYSILINALC-----NENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGK 432

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDK--RGQGFRGV 250
           V+EA  ++++M+ K   PD+      +I    +G+ F  V
Sbjct: 433 VNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAV 472



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 71/140 (50%), Gaps = 6/140 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHM-PDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
           +     K    ++A ++F  +K      PDVV +T++I  Y  AG+ +EA  +   ML  
Sbjct: 247 LIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRL 306

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           G+ P   T+ VL+ G A A +     +  A++   +M+  G  P+  T+T++ + + R  
Sbjct: 307 GIYPTNVTFNVLVDGYAKAGE-----MLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVG 361

Query: 212 KVDEARGLLQQMKAKGFVPD 231
           +V +   L ++M A+G  P+
Sbjct: 362 QVSQGFRLWEEMNARGMFPN 381



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 62/156 (39%), Gaps = 8/156 (5%)

Query: 77  IFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           +      EG       + + L K     +A++LF +        D      +I      G
Sbjct: 161 LLQSFEVEGCCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVG 220

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN--AKILGDAQKYLMEMVGKGMR 194
           + ++AL +   M   G  P+  TY  LI+G   + + N  +++  D +       G    
Sbjct: 221 KAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKS------GSVCS 274

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           P+  TYT++   + +A K+ EA  LL  M   G  P
Sbjct: 275 PDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYP 310



 Score = 44.3 bits (103), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 36/154 (23%), Positives = 65/154 (42%), Gaps = 9/154 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           ++ +M   G+  NA     + +AL  +    +A +L  Q+  K  +P    +  VI+ + 
Sbjct: 369 LWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFC 428

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG+  EA  +   M      P+  T+ +LI G           + +A     +MV  G 
Sbjct: 429 KAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGR-----MFEAVSIFHKMVAIGC 483

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
            P+  T +++    ++A    EA   L Q+  KG
Sbjct: 484 SPDKITVSSLLSCLLKAGMAKEAYH-LNQIARKG 516


>gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
          Length = 962

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 52/158 (32%), Positives = 78/158 (49%), Gaps = 8/158 (5%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F +M   GL  N V    + D  SKDG    AL L  ++++ G  P+V ++ AVI   + 
Sbjct: 543 FQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGLSK 602

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
             +  EA ++  +M   G+ PN  TY  LI GL    +G  +    A K   +M  +   
Sbjct: 603 ENRFSEAEKICDKMAEQGLLPNVITYTTLIDGL--CRNGRTQF---AFKIFHDMEKRKCL 657

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           PN  TY+++     +  K DEA  LL++M+ KG  PDE
Sbjct: 658 PNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDE 695



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 52/190 (27%), Positives = 78/190 (41%), Gaps = 28/190 (14%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +IFH M       N      +   L ++G   EA  L  +++ KG  PD V  T++I+ +
Sbjct: 646 KIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGF 705

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA--------------------- 171
              G+   A  +  RM+  G  PN  TY+VL+KGL                         
Sbjct: 706 VVLGRIDHAFLLLRRMVDVGCKPNYRTYSVLLKGLQKECLLLEEKVAVQHEAVYSFSPHE 765

Query: 172 -DGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
            D N +I+ +    L  M   G  P   TY+ +     R  +  EA  L++ MK +GF P
Sbjct: 766 KDVNFEIVSN---LLARMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCP 822

Query: 231 DEKAVKEALI 240
           D +     LI
Sbjct: 823 DREIYYSLLI 832



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/139 (33%), Positives = 67/139 (48%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + LSK G   EA  + +QI      PDV  +T++I  +        A  VF RM+  G
Sbjct: 246 LINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEG 305

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN+ TY+ LI GL      N   + +A   L EM+ KG+ P   TYT    A    + 
Sbjct: 306 CDPNSVTYSTLINGLC-----NEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEH 360

Query: 213 VDEARGLLQQMKAKGFVPD 231
            +EA  L+ +MK +G  P+
Sbjct: 361 EEEAIELVARMKKRGCRPN 379



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/161 (27%), Positives = 68/161 (42%), Gaps = 8/161 (4%)

Query: 80  KMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           +M+  G   N      +   LS+ G    A+ L+ ++  +G +P+ V + A+I      G
Sbjct: 370 RMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGG 429

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196
           +   AL++F  M   G   N  TY  +IKGL    D     +  A     +M+  G  P 
Sbjct: 430 RFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGD-----IEKAMVLFEKMLKMGPLPT 484

Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKE 237
             TY  +   ++    V+ A  LL  MK  G  PDE    E
Sbjct: 485 VVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNE 525



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 44/166 (26%), Positives = 72/166 (43%), Gaps = 8/166 (4%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M  EG   N+V    + + L  +G   EAL +  ++ +KG  P V  +T  I A  
Sbjct: 297 VFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALC 356

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
           +    +EA+ +  RM   G  PN  TY  LI GL+         L  A     +M+ +G+
Sbjct: 357 AIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGK-----LEVAIGLYHKMLKEGL 411

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
            PN  TY A+        +   A  +   M+  G + + +   E +
Sbjct: 412 VPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEII 457



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 5/134 (3%)

Query: 97  LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
           L+K  +   A  L+ Q+ + G  P ++    +I   +  G+ +EA  +  ++    ++P+
Sbjct: 215 LAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPD 274

Query: 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
            +TY  LI G         + L  A      MV +G  PN+ TY+ +        +VDEA
Sbjct: 275 VFTYTSLILGHC-----RNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEA 329

Query: 217 RGLLQQMKAKGFVP 230
             +L++M  KG  P
Sbjct: 330 LDMLEEMIEKGIEP 343



 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/175 (22%), Positives = 76/175 (43%), Gaps = 7/175 (4%)

Query: 57  YDPFKKVVDEEPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDK 116
           + P +K V+ E     NL     ++  E   +    +   L + G  +EA QL   +K++
Sbjct: 761 FSPHEKDVNFEIVS--NLLARMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKER 818

Query: 117 GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK 176
           G  PD   + +++ A+    +   AL++F  + A G   +   Y  LI  L  A      
Sbjct: 819 GFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQ---- 874

Query: 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            + +AQ     M+ K    +   +T + +  ++  ++D    LL  M++K F P+
Sbjct: 875 -VEEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFTPN 928



 Score = 42.7 bits (99), Expect = 0.14,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 51/119 (42%), Gaps = 5/119 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           AL++F  I+ KG    +  + A+I A   AGQ +EA  +F  ML      +   + VL+ 
Sbjct: 843 ALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVD 902

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           GL    +     L    K L  M  K   PN  TY  +     R  K  E+  L  ++K
Sbjct: 903 GLLKEGE-----LDLCMKLLHIMESKNFTPNIQTYVILGRELSRIGKSIESEPLADKLK 956


>gi|255660888|gb|ACU25613.1| pentatricopeptide repeat-containing protein [Verbena rigida]
          Length = 481

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 12/168 (7%)

Query: 78  FHKMRTEGL-----TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           F+KM +EG+     T N   M       G    A + F  +K +   PDVV +  +I  Y
Sbjct: 138 FNKMLSEGIEPTRHTFNV--MIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGY 195

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               + +EA + F+ M    + P   TY  LIKG  +        + DA + + EM G G
Sbjct: 196 YRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQ-----VDDALRLVEEMKGFG 250

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
           ++PNA TY+ +      A+K+ EAR +L++M  K   P + ++   LI
Sbjct: 251 IKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLI 298



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 82/171 (47%), Gaps = 30/171 (17%)

Query: 91  VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           V M D+  K+G+  E++++F ++++ G    + ++  + +     G+   A R F +ML+
Sbjct: 84  VMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNXLFKVILRRGRYMMAKRYFNKMLS 143

Query: 151 SGVAPNAYTYAVLIKGLAAAA----------------------------DGNAKI--LGD 180
            G+ P  +T+ V+I G   +                             +G  ++  + +
Sbjct: 144 EGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEE 203

Query: 181 AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           A+KY +EM G+ + P   TYT + + +V   +VD+A  L+++MK  G  P+
Sbjct: 204 AEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPN 254



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 76/150 (50%), Gaps = 10/150 (6%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA + F ++K +   P VV +T +I+ Y S  Q  +ALR+   M   G+ PNA TY+ L+
Sbjct: 203 EAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLL 262

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGT-YTAVFEAFVRAQKVDEARGLLQQM 223
            GL      NA+ + +A+  L EM+ K + P   + +  +  +  ++  +D A  +L+ M
Sbjct: 263 PGLC-----NAEKMSEARVILKEMMDKYLAPTDNSIFMRLISSHCKSGNLDAAADVLKAM 317

Query: 224 KAKGFVPDEKAVKEALID---KRGQGFRGV 250
             +  VP E      LI+   K GQ  + V
Sbjct: 318 -IRLSVPTEAGHYGXLIENFCKXGQYDKAV 346


>gi|255586139|ref|XP_002533731.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526356|gb|EEF28650.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 10/160 (6%)

Query: 76  EIFHKMRTEGLTNN---AVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+  +MR+ GL  +      +  A  ++GL  EA + F+ +K +G+ P  V + A++  +
Sbjct: 279 ELLDEMRSRGLDFDEFTCSTVLSACGREGLIDEAREFFSGLKSEGYKPGTVTYNALLHVF 338

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTY-AVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
             AG   EAL V   M  +   P+A TY  V+   + A       ++ DA      M  K
Sbjct: 339 GKAGIFSEALSVLSEMEENNCPPDAVTYNEVVAAYVRAGFHEEGAVVIDA------MASK 392

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G+ PNA TYT +  A+ R   +D+A  +  QM   G VP+
Sbjct: 393 GIMPNAVTYTTIINAYGRVGDIDKALEMFDQMMELGCVPN 432



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 80/186 (43%), Gaps = 12/186 (6%)

Query: 75  QEIFHKMRTEG-----LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           +E F  +++EG     +T NA  +     K G+  EAL + +++++    PD V +  V+
Sbjct: 313 REFFSGLKSEGYKPGTVTYNA--LLHVFGKAGIFSEALSVLSEMEENNCPPDAVTYNEVV 370

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
            AY  AG  +E   V   M + G+ PNA TY  +I       D     +  A +   +M+
Sbjct: 371 AAYVRAGFHEEGAVVIDAMASKGIMPNAVTYTTIINAYGRVGD-----IDKALEMFDQMM 425

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRG 249
             G  PN  TY AV     +    +E   +L  MK  G  P+       L     +G   
Sbjct: 426 ELGCVPNVATYNAVLGMLGKKSLSEEMMKILGHMKLNGCSPNHITWNTMLAMCGKKGMHK 485

Query: 250 VINILF 255
            +N +F
Sbjct: 486 YVNQVF 491



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 70/139 (50%), Gaps = 7/139 (5%)

Query: 86  LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVF 145
           +T+N+  + D  ++ G   +A ++   ++  G  PD+V++  VI+ +   G  +E +R+ 
Sbjct: 679 VTHNS--LMDMYARGGDCWKAEEVLRMLQTSGGKPDLVSYNTVIKGFCRKGLMQEGIRIL 736

Query: 146 MRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFE 205
             M + GV P  +TY   I G   AA G    + D   Y   M+    RPN  TY  V +
Sbjct: 737 SEMTSIGVGPCIFTYNTFISGY--AAQGMFTEINDVISY---MIVHNCRPNELTYKIVAD 791

Query: 206 AFVRAQKVDEARGLLQQMK 224
            + +A++ DEA   + ++K
Sbjct: 792 GYCKARRYDEAIDFVSKIK 810



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 4/125 (3%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A +LF  I    ++ DV A+T ++ AY+  G+   A+ +F RM  SG++P+  TY V++ 
Sbjct: 206 ASKLFDVIPLDDYVLDVRAYTTILHAYSRTGKYHRAIEIFERMNESGLSPSLVTYNVMLD 265

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
                     KIL    + L EM  +G+  +  T + V  A  R   +DEAR     +K+
Sbjct: 266 VYGKMGRSWDKIL----ELLDEMRSRGLDFDEFTCSTVLSACGREGLIDEAREFFSGLKS 321

Query: 226 KGFVP 230
           +G+ P
Sbjct: 322 EGYKP 326



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 70/156 (44%), Gaps = 14/156 (8%)

Query: 61  KKVVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKG 117
           KK + EE      + +I   M+  G + N +    M     K G+     Q+F ++K+ G
Sbjct: 445 KKSLSEE------MMKILGHMKLNGCSPNHITWNTMLAMCGKKGMHKYVNQVFREMKNCG 498

Query: 118 HMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKI 177
             PD      +I AY   G   +A ++   M+ +G +P   TY  L+  LA   D  A  
Sbjct: 499 FEPDRDTFNTLISAYGRCGSNNDAAKMHEEMIKAGFSPCINTYNALLNALARRGDWKA-- 556

Query: 178 LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV 213
              A+  +++M  KG RP+  +Y+ +  ++ +   V
Sbjct: 557 ---AESVILDMRNKGFRPSETSYSLMVHSYAKGGNV 589



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 66/163 (40%), Gaps = 10/163 (6%)

Query: 76  EIFHKMRTEGLTNNAVKMFDA----LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           E+F +M   G   N V  ++A    L K  L+ E +++   +K  G  P+ +    ++  
Sbjct: 419 EMFDQMMELGCVPN-VATYNAVLGMLGKKSLSEEMMKILGHMKLNGCSPNHITWNTMLAM 477

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G  K   +VF  M   G  P+  T+  LI         N     DA K   EM+  
Sbjct: 478 CGKKGMHKYVNQVFREMKNCGFEPDRDTFNTLISAYGRCGSNN-----DAAKMHEEMIKA 532

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
           G  P   TY A+  A  R      A  ++  M+ KGF P E +
Sbjct: 533 GFSPCINTYNALLNALARRGDWKAAESVILDMRNKGFRPSETS 575



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 77/188 (40%), Gaps = 25/188 (13%)

Query: 64  VDEEPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLT-------------------- 103
           +D+   D R    I H     G  + A+++F+ +++ GL+                    
Sbjct: 215 LDDYVLDVRAYTTILHAYSRTGKYHRAIEIFERMNESGLSPSLVTYNVMLDVYGKMGRSW 274

Query: 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
            + L+L  +++ +G   D    + V+ A    G   EA   F  + + G  P   TY  L
Sbjct: 275 DKILELLDEMRSRGLDFDEFTCSTVLSACGREGLIDEAREFFSGLKSEGYKPGTVTYNAL 334

Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           +        G A I  +A   L EM      P+A TY  V  A+VRA   +E   ++  M
Sbjct: 335 LHVF-----GKAGIFSEALSVLSEMEENNCPPDAVTYNEVVAAYVRAGFHEEGAVVIDAM 389

Query: 224 KAKGFVPD 231
            +KG +P+
Sbjct: 390 ASKGIMPN 397


>gi|255551759|ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544013|gb|EEF45539.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 901

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 80/156 (51%), Gaps = 8/156 (5%)

Query: 72  RNLQEIFHKMRTEG--LTNNAVKMF-DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R   E+F+ M+ +G  L  +A   F D   K G  ++A QL  ++K KG  P VV + +V
Sbjct: 599 RETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSV 658

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I+  A   +  EA  +F    ++G+  N   Y+ LI G      G    + +A   + E+
Sbjct: 659 IDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGF-----GKVGRIDEAYLIMEEL 713

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           + KG+ PN  T+  + +A V+A++++EA    Q MK
Sbjct: 714 MQKGLTPNVYTWNCLLDALVKAEEINEALVCFQNMK 749



 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 73/158 (46%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F + ++ GL  N V    + D   K G   EA  +  ++  KG  P+V     +++A  
Sbjct: 674 LFEEAKSNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALV 733

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            A +  EAL  F  M      PN  TY++LI GL      N   +     +  EM  +G+
Sbjct: 734 KAEEINEALVCFQNMKNLKGTPNHITYSILINGLCRVRKFNKAFV-----FWQEMQKQGL 788

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +PN  TYT +     +A  + EA  L ++ KA G VPD
Sbjct: 789 KPNTITYTTMIAGLAKAGNIAEASSLFERFKANGGVPD 826



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 6/151 (3%)

Query: 95  DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           D + K G T +   LF +IK +G +PDV++++ +I     AG  +E   +F  M   G  
Sbjct: 555 DCVFKAGETGKGRALFEEIKSRGFIPDVMSYSILIHGLVKAGFARETYELFYAMKEQGCV 614

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
            + + Y   I G   +   N      A + L EM  KG +P   TY +V +   +  ++D
Sbjct: 615 LDTHAYNTFIDGFCKSGKVNK-----AYQLLEEMKTKGRQPTVVTYGSVIDGLAKIDRLD 669

Query: 215 EARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
           EA  L ++ K+ G   +   +  +LID  G+
Sbjct: 670 EAYMLFEEAKSNGLELN-VVIYSSLIDGFGK 699



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 69/154 (44%), Gaps = 8/154 (5%)

Query: 81  MRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ 137
           M+  GL  N +    M D L K     EA  +F  +  K   PD V   ++I+     G+
Sbjct: 433 MKEAGLFPNVMTVNIMIDRLCKAKKLDEACSIFEGMNHKICSPDEVTFCSLIDGLGKQGR 492

Query: 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA 197
             +A R++ +ML S   PNA  Y  LIK              D  K   EM+ +G  P+ 
Sbjct: 493 VDDAYRLYEQMLDSDKIPNAVVYTSLIKSFFKCGRKE-----DGHKIFKEMIHRGCSPDL 547

Query: 198 GTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
               A  +   +A +  + R L +++K++GF+PD
Sbjct: 548 RLLNAYMDCVFKAGETGKGRALFEEIKSRGFIPD 581



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 79/170 (46%), Gaps = 10/170 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           + FH++++ GL  + V    M   L K     EA+++F Q++   ++P   A+  +I  Y
Sbjct: 289 KFFHEIKSHGLLPDDVTYTSMIGVLCKGNRLDEAVEIFEQMEQNRNVPCAYAYNTMIMGY 348

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
            SAG+  EA  +  R  A G  P+   Y  ++  L     G    LG+A +   EM  K 
Sbjct: 349 GSAGKFDEAYSLLERQKARGCIPSVIAYNCILTCL-----GKKGRLGEALRTFEEM-KKD 402

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDK 242
             PN  TY  + +   +A +V+ A  +   MK  G  P+   V   +ID+
Sbjct: 403 AAPNLSTYNVLIDMLCKAGEVEAAFKVRDAMKEAGLFPNVMTVN-IMIDR 451



 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/142 (33%), Positives = 67/142 (47%), Gaps = 9/142 (6%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA  L  + K +G +P V+A+  ++      G+  EALR F  M     APN  TY VLI
Sbjct: 356 EAYSLLERQKARGCIPSVIAYNCILTCLGKKGRLGEALRTFEEM-KKDAAPNLSTYNVLI 414

Query: 165 KGLAAAADGNAKI-LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
             L  A +  A   + DA K        G+ PN  T   + +   +A+K+DEA  + + M
Sbjct: 415 DMLCKAGEVEAAFKVRDAMK------EAGLFPNVMTVNIMIDRLCKAKKLDEACSIFEGM 468

Query: 224 KAKGFVPDEKAVKEALIDKRGQ 245
             K   PDE     +LID  G+
Sbjct: 469 NHKICSPDEVTFC-SLIDGLGK 489



 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 77/175 (44%), Gaps = 40/175 (22%)

Query: 91  VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
             + D L K G   +A +L+ Q+ D   +P+ V +T++I+++   G+ ++  ++F  M+ 
Sbjct: 481 CSLIDGLGKQGRVDDAYRLYEQMLDSDKIPNAVVYTSLIKSFFKCGRKEDGHKIFKEMIH 540

Query: 151 SGVAP-----NAY------------------------------TYAVLIKGLAAAADGNA 175
            G +P     NAY                              +Y++LI GL  A  G A
Sbjct: 541 RGCSPDLRLLNAYMDCVFKAGETGKGRALFEEIKSRGFIPDVMSYSILIHGLVKA--GFA 598

Query: 176 KILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           +   +  +    M  +G   +   Y    + F ++ KV++A  LL++MK KG  P
Sbjct: 599 R---ETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTKGRQP 650



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 74/160 (46%), Gaps = 14/160 (8%)

Query: 77  IFHKMRTEG------LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           +FH+M+  G      L    +++F   +++G    AL L  ++K      D+V +   I+
Sbjct: 220 LFHQMQELGYEVSVHLFTTVIRVF---AREGRLDAALSLLDEMKSNCLHADIVLYNVCID 276

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
            +  AG+   A + F  + + G+ P+  TY  +I  L     GN   L +A +   +M  
Sbjct: 277 CFGKAGKVDMAWKFFHEIKSHGLLPDDVTYTSMIGVLCK---GNR--LDEAVEIFEQMEQ 331

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
               P A  Y  +   +  A K DEA  LL++ KA+G +P
Sbjct: 332 NRNVPCAYAYNTMIMGYGSAGKFDEAYSLLERQKARGCIP 371



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 69/154 (44%), Gaps = 8/154 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           I  ++  +GLT N      + DAL K    +EAL  F  +K+    P+ + ++ +I    
Sbjct: 709 IMEELMQKGLTPNVYTWNCLLDALVKAEEINEALVCFQNMKNLKGTPNHITYSILINGLC 768

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
              +  +A   +  M   G+ PN  TY  +I GLA A +     + +A          G 
Sbjct: 769 RVRKFNKAFVFWQEMQKQGLKPNTITYTTMIAGLAKAGN-----IAEASSLFERFKANGG 823

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
            P++ +Y A+ E    +++  EA  + ++ + KG
Sbjct: 824 VPDSASYNAIIEGLSYSRRAMEAYKIFEETRMKG 857



 Score = 45.8 bits (107), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 48/225 (21%), Positives = 86/225 (38%), Gaps = 12/225 (5%)

Query: 11  LHSPSPKRSLRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKKVVDEEPTD 70
           L   SPK  L I   R    + +++S       K     ++  P  YD    V+  +   
Sbjct: 88  LFVESPKTDLVIGVLRRAKDVNQAISYFRWTERK---TDQALCPEAYDSLLLVM-AKNVK 143

Query: 71  PRNLQEIFHKMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
               ++I  +M   G    T   +++  +  K     E   L   ++     P   A+T 
Sbjct: 144 FDYFEQILGEMSIAGFGPSTKTCIELILSCIKSNKLREGFDLIQCMRKFKFRPAFSAYTT 203

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           +I A +S  +    L +F +M   G   + + +  +I+  A     +A     A   L E
Sbjct: 204 LIGALSSVQESDIMLTLFHQMQELGYEVSVHLFTTVIRVFAREGRLDA-----ALSLLDE 258

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           M    +  +   Y    + F +A KVD A     ++K+ G +PD+
Sbjct: 259 MKSNCLHADIVLYNVCIDCFGKAGKVDMAWKFFHEIKSHGLLPDD 303



 Score = 42.0 bits (97), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 3/94 (3%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
            + +M+ +GL  N +    M   L+K G   EA  LF + K  G +PD  ++ A+IE  +
Sbjct: 779 FWQEMQKQGLKPNTITYTTMIAGLAKAGNIAEASSLFERFKANGGVPDSASYNAIIEGLS 838

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
            + +  EA ++F      G   +  T   L+  L
Sbjct: 839 YSRRAMEAYKIFEETRMKGCNIHTKTCIALLDAL 872


>gi|341605707|gb|AEK82956.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 76/146 (52%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+G  +E   +F  +  KG  P+V  +T +I+ YA +G  ++A+R+  RM+  G  P
Sbjct: 26  GLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIBEGFKP 85

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY+V++ GL      N ++  +A  Y       G+  N+  Y+++ +   +A ++DE
Sbjct: 86  DVVTYSVVVNGLCK----NGRV-EEALDYFQTCXFNGLAINSMFYSSLIDGLGKAGRIDE 140

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      ALID
Sbjct: 141 AERLFEEMSEKGCTRDSYCYN-ALID 165



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 72/134 (53%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ B+G  PDVV ++ V+      G+ +EAL  F     +G
Sbjct: 58  LIDGYAKSGSVEDAIRLLHRMIBEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCXFNG 117

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +A N+  Y+ LI GL     G A  + +A++   EM  KG   ++  Y A+ +A  +  K
Sbjct: 118 LAINSMFYSSLIDGL-----GKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGK 172

Query: 213 VDEARGLLQQMKAK 226
           VDEA  L ++M+ +
Sbjct: 173 VDEAMXLFKRMEEE 186



 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 60/143 (41%), Gaps = 6/143 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
            + L+ ++ +KG        + VI      G+  E   VF  M+  G  PN   Y VLI 
Sbjct: 1   CVALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLID 60

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G A +       + DA + L  M+ +G +P+  TY+ V     +  +V+EA    Q    
Sbjct: 61  GYAKSGS-----VEDAIRLLHRMIBEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCXF 115

Query: 226 KGFVPDEKAVKEALIDKRGQGFR 248
            G   +      +LID  G+  R
Sbjct: 116 NGLAIN-SMFYSSLIDGLGKAGR 137


>gi|297736854|emb|CBI26055.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 81/184 (44%), Gaps = 12/184 (6%)

Query: 54  PPPYDPFKKVVDEEPTDPRNLQE---IFHKMRTEGLTNNAV---KMFDALSKDGLTHEAL 107
           PP    +  V+D      R L E   +F + ++ G+  N V    + D   K G   EA 
Sbjct: 401 PPTVVTYGSVIDGLAKIDR-LDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAY 459

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
            +  ++  KG  P+V     +++A   A +  EAL  F  M      PN  TY++LI GL
Sbjct: 460 LIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGL 519

Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
                 N   +     +  EM   G++PN  TYT +     +A  + EA GL  + KA G
Sbjct: 520 CRVRKFNKAFV-----FWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANG 574

Query: 228 FVPD 231
            +PD
Sbjct: 575 GIPD 578



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 84/192 (43%), Gaps = 43/192 (22%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           IF  M  +  T NAV    + D L K G   +A  L+ ++ D GH+P  + +T++I ++ 
Sbjct: 216 IFEGMDDKVCTPNAVTFSSLIDGLGKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFF 275

Query: 134 SAGQGKEALRVFMRMLASGVAPN-----------------------------------AY 158
             G+ ++  +++  M+ +G +P+                                   A 
Sbjct: 276 KCGRKEDGHKIYKEMVHTGCSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDAR 335

Query: 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218
           +Y++LI GL  A   N     +  +    M  +G   +   Y AV + F ++ KV++A  
Sbjct: 336 SYSILIHGLVKAGLAN-----ETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQ 390

Query: 219 LLQQMKAKGFVP 230
           LL++MK KG  P
Sbjct: 391 LLEEMKVKGHPP 402



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 69/162 (42%), Gaps = 8/162 (4%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           EI   M   GL  N +    M D L K     EA  +F  + DK   P+ V  +++I+  
Sbjct: 180 EIRDDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGL 239

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+  +A  ++ +ML  G  P A  Y  LI+              D  K   EMV  G
Sbjct: 240 GKCGRVDDAYSLYEKMLDCGHVPGAIVYTSLIRSFFKCGRKE-----DGHKIYKEMVHTG 294

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
             P+        +   +A + ++ R L +++ A GF+PD ++
Sbjct: 295 CSPDLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARS 336



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 79/160 (49%), Gaps = 12/160 (7%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F ++   G   +A     +   L K GL +E  +LF  +K++G + D  A+ AVI+ + 
Sbjct: 321 LFREINAHGFIPDARSYSILIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFC 380

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKI--LGDAQKYLMEMVGK 191
            +G+  +A ++   M   G  P   TY  +I GL       AKI  L +A     E    
Sbjct: 381 KSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGL-------AKIDRLDEAYMLFEEAKSN 433

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G++ N   Y+++ + F +  ++DEA  +++++  KG  P+
Sbjct: 434 GIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPN 473



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 74/157 (47%), Gaps = 7/157 (4%)

Query: 77  IFHKMRTEGLTNNAVK--MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           IF +M+ + + N      + D L ++G  + AL++   ++  G  P+V+    +I+    
Sbjct: 147 IFEEMKRDAVPNVPTYNILIDMLCREGKLNAALEIRDDMERAGLFPNVLTVNIMIDRLCK 206

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
           A + +EA  +F  M      PNA T++ LI GL     G    + DA     +M+  G  
Sbjct: 207 AQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGL-----GKCGRVDDAYSLYEKMLDCGHV 261

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           P A  YT++  +F +  + ++   + ++M   G  PD
Sbjct: 262 PGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPD 298



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 8/154 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           I  ++  +GLT N      + DAL K    +EAL  F  +KD    P+ + ++ +I    
Sbjct: 461 IMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLC 520

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
              +  +A   +  M   G+ PN  TY  +I GLA A +     + +A          G 
Sbjct: 521 RVRKFNKAFVFWQEMQKLGLKPNTITYTTMISGLAKAGN-----ILEASGLFSRFKANGG 575

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
            P++ +Y A+ E    A K  +A  L ++ + KG
Sbjct: 576 IPDSASYNAMIEGLSSANKAMDAYALFEETRLKG 609



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 7/146 (4%)

Query: 97  LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
           L K     EA++LF Q++    +P   A+  +I  Y SAG+  EA  +  R  A G  P+
Sbjct: 65  LCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPS 124

Query: 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
              Y  ++  L     G  + + +A +   EM  +   PN  TY  + +   R  K++ A
Sbjct: 125 VIAYNCILTCL-----GKKRRVEEALRIFEEM-KRDAVPNVPTYNILIDMLCREGKLNAA 178

Query: 217 RGLLQQMKAKGFVPDEKAVKEALIDK 242
             +   M+  G  P+   V   +ID+
Sbjct: 179 LEIRDDMERAGLFPNVLTVN-IMIDR 203



 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 3/97 (3%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
            + +M+  GL  N +    M   L+K G   EA  LF++ K  G +PD  ++ A+IE  +
Sbjct: 531 FWQEMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPDSASYNAMIEGLS 590

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAA 170
           SA +  +A  +F      G   +  T  VL+  L  A
Sbjct: 591 SANKAMDAYALFEETRLKGCNIHTKTCVVLLDALHKA 627


>gi|334183628|ref|NP_001185309.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
 gi|193806276|sp|P0C7R3.1|PP106_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g64583, mitochondrial; Flags: Precursor
 gi|332196135|gb|AEE34256.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
          Length = 512

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 73/159 (45%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+ ++M  +GL  + V    +   L   G   +A ++   +  +   PDVV  TA+I+ +
Sbjct: 197 ELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVF 256

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G   EA  ++  M+ S V PN  TY  +I GL          L DA+K    M  KG
Sbjct: 257 VKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGR-----LYDAKKTFDLMASKG 311

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             PN  TY  +   F + + VDE   L Q+M  +GF  D
Sbjct: 312 CFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNAD 350



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 62/127 (48%), Gaps = 5/127 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +A  L   +   G+ P+VV +  +I+     G+   AL +   M   G+  +  TY  L+
Sbjct: 159 DAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLL 218

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            GL  +   +     DA + L +M+ + + P+  T+TA+ + FV+   +DEA+ L ++M 
Sbjct: 219 TGLCYSGRWS-----DAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMI 273

Query: 225 AKGFVPD 231
                P+
Sbjct: 274 QSSVDPN 280



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/211 (19%), Positives = 88/211 (41%), Gaps = 37/211 (17%)

Query: 50  KSKLPPPYDPFKKVVDEEPTDPRNL--QEIFHKMRTEGLTNNAVKMFDALSKDG------ 101
           +  L    + +K+++ +   DP N+    I + +   G   +A K FD ++  G      
Sbjct: 259 QGNLDEAQELYKEMI-QSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVV 317

Query: 102 -------------LTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRM 148
                        +  E ++LF ++  +G   D+  +  +I  Y   G+ + AL +F  M
Sbjct: 318 TYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWM 377

Query: 149 LASGVAPNAYTYAVLIKGLAAAADGNAKI-----LGDAQKYLMEMVGKGMRPNAGTYTAV 203
           ++  V P+  T+ +L+ GL    +  + +     + +++KY+              Y  +
Sbjct: 378 VSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYI----------GIVAYNIM 427

Query: 204 FEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
                +A KV++A  L  ++  +G  PD + 
Sbjct: 428 IHGLCKADKVEKAWELFCRLPVEGVKPDART 458



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 58/129 (44%), Gaps = 6/129 (4%)

Query: 104 HEALQLFAQ-IKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAV 162
           +E +  F+Q ++  G   D+ + T +I  +    +   AL V  +M+  G  P+  T+  
Sbjct: 87  YETVIYFSQKMELYGISHDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGS 146

Query: 163 LIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
           L+ G           +GDA   ++ MV  G  PN   Y  + +   +  +++ A  LL +
Sbjct: 147 LLHGFCLVNR-----IGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNE 201

Query: 223 MKAKGFVPD 231
           M+ KG   D
Sbjct: 202 MEKKGLGAD 210



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 10/168 (5%)

Query: 76  EIFHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           ++F +M  EG  N  +  ++ L     + G    AL +F  +  +   PD++ H  ++  
Sbjct: 337 KLFQRMSCEGF-NADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHG 395

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G+ + AL  F  M  S        Y ++I GL   AD   K    A +    +  +
Sbjct: 396 LCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGL-CKADKVEK----AWELFCRLPVE 450

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
           G++P+A TYT +     +     EA  L+++MK +G +    A  + L
Sbjct: 451 GVKPDARTYTIMILGLCKNGPRREADELIRRMKEEGIICQMNAEDDHL 498



 Score = 43.5 bits (101), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 66/149 (44%), Gaps = 8/149 (5%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +A  LF ++     +P +V  T ++ A A+  + +  +    +M   G++ + Y++ +LI
Sbjct: 54  DAFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTILI 113

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
                 +      L  A   L +M+  G  P+  T+ ++   F    ++ +A  L+  M 
Sbjct: 114 HCFCRCSR-----LSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMV 168

Query: 225 AKGFVPDEKAVKEALIDKRGQGFRGVINI 253
             G+ P+   V   LID  G    G +NI
Sbjct: 169 KSGYEPN-VVVYNTLID--GLCKNGELNI 194


>gi|255660882|gb|ACU25610.1| pentatricopeptide repeat-containing protein [Verbena montevidensis]
          Length = 484

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 12/168 (7%)

Query: 78  FHKMRTEGL-----TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           F+KM +EG+     T N   M       G    A + F  +K +   PDVV +  +I  Y
Sbjct: 138 FNKMLSEGIEPTRHTFNV--MIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGY 195

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               + +EA + F+ M    + P   TY  LIKG  +        + DA + + EM G G
Sbjct: 196 YRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQ-----VDDALRLVEEMKGFG 250

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
           ++PNA TY+ +      A+K+ EAR +L++M  K   P + ++   LI
Sbjct: 251 IKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLI 298



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 83/171 (48%), Gaps = 30/171 (17%)

Query: 91  VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           V M D+  K+G+  E++++F ++++ G    + ++ A+ +     G+   A R F +ML+
Sbjct: 84  VMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLS 143

Query: 151 SGVAPNAYTYAVLIKGLAAAA----------------------------DGNAKI--LGD 180
            G+ P  +T+ V+I G   +                             +G  ++  + +
Sbjct: 144 EGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEE 203

Query: 181 AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           A+KY +EM G+ + P   TYT + + +V   +VD+A  L+++MK  G  P+
Sbjct: 204 AEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPN 254



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 75/151 (49%), Gaps = 9/151 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
            F  M++  ++ + V    M +   +     EA + F ++K +   P VV +T +I+ Y 
Sbjct: 172 FFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYV 231

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
           S  Q  +ALR+   M   G+ PNA TY+ L+ GL      NA+ + +A+  L EM+ K +
Sbjct: 232 SVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLC-----NAEKMSEARVILKEMMDKYL 286

Query: 194 RP-NAGTYTAVFEAFVRAQKVDEARGLLQQM 223
            P +   +  +  +  ++  +D A  +L+ M
Sbjct: 287 APTDNSIFMRLISSHCKSGNLDAAADVLKAM 317


>gi|341605711|gb|AEK82958.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605785|gb|AEK82995.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605787|gb|AEK82996.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605789|gb|AEK82997.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605793|gb|AEK82999.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605795|gb|AEK83000.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 76/146 (52%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+G  +E   +F  +  KG  P+V  +T +I+ YA +G  ++A+R+  RM+  G  P
Sbjct: 26  GLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKP 85

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY+V++ GL      N ++  +A  Y       G+  N+  Y+++ +   +A ++DE
Sbjct: 86  DVVTYSVVVNGLCK----NGRV-EEALDYFQTCRFNGLAINSXFYSSLIDGLGKAGRIDE 140

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      ALID
Sbjct: 141 AERLFEEMSEKGCTRDSYCYN-ALID 165



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 72/134 (53%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ D+G  PDVV ++ V+      G+ +EAL  F     +G
Sbjct: 58  LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNG 117

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +A N+  Y+ LI GL     G A  + +A++   EM  KG   ++  Y A+ +A  +  K
Sbjct: 118 LAINSXFYSSLIDGL-----GKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGK 172

Query: 213 VDEARGLLQQMKAK 226
           VDEA  L ++M+ +
Sbjct: 173 VDEAMTLFKRMEEE 186



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 6/143 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
            + L+ ++ +KG        + VI      G+  E   VF  M+  G  PN   Y VLI 
Sbjct: 1   CVALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLID 60

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G A +       + DA + L  M+ +G +P+  TY+ V     +  +V+EA    Q  + 
Sbjct: 61  GYAKSGS-----VEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRF 115

Query: 226 KGFVPDEKAVKEALIDKRGQGFR 248
            G   +      +LID  G+  R
Sbjct: 116 NGLAIN-SXFYSSLIDGLGKAGR 137


>gi|341605697|gb|AEK82951.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 76/146 (52%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+G  +E   +F  +  KG  P+V  +T +I+ YA +G  ++A+R+  RM+  G  P
Sbjct: 26  GLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKP 85

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY+V++ GL      N ++  +A  Y       G+  N+  Y+++ +   +A ++DE
Sbjct: 86  DVVTYSVVVNGLCK----NGRV-EEALDYFQTCXFNGLAINSMFYSSLIDGLGKAGRIDE 140

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      ALID
Sbjct: 141 AERLFEEMSEKGCTRDSYCYN-ALID 165



 Score = 73.9 bits (180), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 72/134 (53%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ D+G  PDVV ++ V+      G+ +EAL  F     +G
Sbjct: 58  LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCXFNG 117

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +A N+  Y+ LI GL     G A  + +A++   EM  KG   ++  Y A+ +A  +  K
Sbjct: 118 LAINSMFYSSLIDGL-----GKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGK 172

Query: 213 VDEARGLLQQMKAK 226
           VDEA  L ++M+ +
Sbjct: 173 VDEAMMLFKRMEEE 186



 Score = 53.5 bits (127), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 60/143 (41%), Gaps = 6/143 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
            + L+ ++ +KG        + VI      G+  E   VF  M+  G  PN   Y VLI 
Sbjct: 1   CVALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLID 60

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G A +       + DA + L  M+ +G +P+  TY+ V     +  +V+EA    Q    
Sbjct: 61  GYAKSGS-----VEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCXF 115

Query: 226 KGFVPDEKAVKEALIDKRGQGFR 248
            G   +      +LID  G+  R
Sbjct: 116 NGLAIN-SMFYSSLIDGLGKAGR 137


>gi|341605727|gb|AEK82966.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605729|gb|AEK82967.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 76/146 (52%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+G  +E   +F  +  KG  P+V  +T +I+ YA +G  ++A+R+  RM+  G  P
Sbjct: 26  GLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIBEGFKP 85

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY+V++ GL      N ++  +A  Y       G+  N+  Y+++ +   +A ++DE
Sbjct: 86  DVVTYSVVVNGLCK----NGRV-EEALDYFQTCRFNGLAINSXFYSSLIDGLGKAGRIDE 140

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      ALID
Sbjct: 141 AERLFEEMSEKGCTRDSYCYN-ALID 165



 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 72/134 (53%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ B+G  PDVV ++ V+      G+ +EAL  F     +G
Sbjct: 58  LIDGYAKSGSVEDAIRLLHRMIBEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNG 117

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +A N+  Y+ LI GL     G A  + +A++   EM  KG   ++  Y A+ +A  +  K
Sbjct: 118 LAINSXFYSSLIDGL-----GKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGK 172

Query: 213 VDEARGLLQQMKAK 226
           VDEA  L ++M+ +
Sbjct: 173 VDEAMTLFKRMEEE 186



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 6/143 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
            + L+ ++ +KG        + VI      G+  E   VF  M+  G  PN   Y VLI 
Sbjct: 1   CVALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLID 60

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G A +       + DA + L  M+ +G +P+  TY+ V     +  +V+EA    Q  + 
Sbjct: 61  GYAKSGS-----VEDAIRLLHRMIBEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRF 115

Query: 226 KGFVPDEKAVKEALIDKRGQGFR 248
            G   +      +LID  G+  R
Sbjct: 116 NGLAIN-SXFYSSLIDGLGKAGR 137


>gi|255660862|gb|ACU25600.1| pentatricopeptide repeat-containing protein [Verbena orcuttiana]
          Length = 484

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 12/168 (7%)

Query: 78  FHKMRTEGL-----TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           F+KM +EG+     T N   M       G    A + F  +K +   PDVV +  +I  Y
Sbjct: 138 FNKMLSEGIEPTRHTFNV--MIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGY 195

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               + +EA + F+ M    + P   TY  LIKG  +        + DA + + EM G G
Sbjct: 196 YRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQ-----VDDALRLVEEMKGFG 250

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
           ++PNA TY+ +      A+K+ EAR +L++M  K   P + ++   LI
Sbjct: 251 IKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIIMRLI 298



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 83/171 (48%), Gaps = 30/171 (17%)

Query: 91  VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           V M D+  K+G+  E++++F ++++ G    + ++ A+ +     G+   A R F +ML+
Sbjct: 84  VMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLS 143

Query: 151 SGVAPNAYTYAVLIKGLAAAA----------------------------DGNAKI--LGD 180
            G+ P  +T+ V+I G   +                             +G  ++  + +
Sbjct: 144 EGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEE 203

Query: 181 AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           A+KY +EM G+ + P   TYT + + +V   +VD+A  L+++MK  G  P+
Sbjct: 204 AEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPN 254



 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 63/120 (52%), Gaps = 6/120 (5%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA + F ++K +   P VV +T +I+ Y S  Q  +ALR+   M   G+ PNA TY+ L+
Sbjct: 203 EAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLL 262

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTA-VFEAFVRAQKVDEARGLLQQM 223
            GL      NA+ + +A+  L EM+ K + P   +    +  +  ++  +D A  +L+ M
Sbjct: 263 PGLC-----NAEKMSEARVILKEMMDKYLAPTDNSIIMRLISSHCKSGNLDAAADVLKAM 317


>gi|297739643|emb|CBI29825.3| unnamed protein product [Vitis vinifera]
          Length = 722

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 73/153 (47%), Gaps = 9/153 (5%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
           A +K G+  +A++ F ++KD G  PDV  + +++           AL V+ +ML     P
Sbjct: 140 AYAKSGMAEKAVESFGKMKDFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNP 199

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           N  T+ +L+ GL      N K   DA K   EM  KG+ PN   YT +     +A++ D+
Sbjct: 200 NRATFVILLNGLCK----NGKT-DDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDD 254

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID---KRGQ 245
              LL  MK  G  PD      AL+D   K GQ
Sbjct: 255 VHRLLNTMKVSGCCPDSITCN-ALLDGFCKLGQ 286



 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 72/171 (42%), Gaps = 30/171 (17%)

Query: 91  VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           V + + L K+G T +AL++F ++  KG  P+ + +T ++     A +  +  R+   M  
Sbjct: 205 VILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKV 264

Query: 151 SGVAPNAYT----------------------------YAVLIKGLAAAADG--NAKILGD 180
           SG  P++ T                            Y + IKG ++  DG   AK   +
Sbjct: 265 SGCCPDSITCNALLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDE 324

Query: 181 AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            Q++  +M   G+ P+   YT +   F     VD A  +L  M  +G  PD
Sbjct: 325 VQEWCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPD 375



 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 56/125 (44%), Gaps = 6/125 (4%)

Query: 117 GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK 176
           G  PDVV +T +I  +   G    AL +   M   G++P+ Y Y  LIKG       +  
Sbjct: 336 GIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFC-----DVG 390

Query: 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK 236
           +L  A+   +E+      P + TYT +     R   +DEAR +  QM+  G  P      
Sbjct: 391 LLDKARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFN 450

Query: 237 EALID 241
            ALID
Sbjct: 451 -ALID 454



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 71/154 (46%), Gaps = 8/154 (5%)

Query: 74  LQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           +QE   KM   G+  + V    +     + G+   AL +   +  +G  PD   + A+I+
Sbjct: 325 VQEWCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIK 384

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
            +   G   +A  + + +  +   P + TY +LI G+         +L +A++   +M  
Sbjct: 385 GFCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRNG-----LLDEARQIFNQMEN 439

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            G  P+  T+ A+ +   +A +++EAR L  +M+
Sbjct: 440 LGCSPSIMTFNALIDGLCKAGELEEARHLFYKME 473



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 62/129 (48%), Gaps = 8/129 (6%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            + ++GL  EA Q+F Q+++ G  P ++   A+I+    AG+ +EA  +F +M    +  
Sbjct: 420 GMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKM---EIGK 476

Query: 156 NAYTYAVLIKG---LAAAADGNAKI--LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
           N   +  L +G   +   A+G  ++    DA + L +MV  G  P++  Y  +     R 
Sbjct: 477 NPSLFLRLSQGADRVMDTANGFHRVDREEDAFRVLDQMVKNGCTPSSAVYKCLMTWSCRK 536

Query: 211 QKVDEARGL 219
            K+  A  L
Sbjct: 537 GKLSVAFSL 545



 Score = 38.5 bits (88), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 30/132 (22%), Positives = 59/132 (44%), Gaps = 5/132 (3%)

Query: 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
           G   +A++   ++  K +  ++  +T  +     A + +EAL++F+ +    +  N  + 
Sbjct: 571 GELEKAVRCLLEMNFKLNNFEIAPYTIWLIGLCQARRSEEALKIFLVLKECQMDVNPPSC 630

Query: 161 AVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
            +LI GL    DGN ++  D   Y +E   KG          +  + +   K+  A  LL
Sbjct: 631 VMLINGL--CKDGNLEMAVDIFLYTLE---KGFMLMPRICNQLLRSLILQDKMKHALDLL 685

Query: 221 QQMKAKGFVPDE 232
            +M + G+  DE
Sbjct: 686 NRMNSAGYDLDE 697


>gi|15225031|ref|NP_178657.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|42570711|ref|NP_973429.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216767|sp|Q9ZUE9.1|PP149_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g06000
 gi|4006835|gb|AAC95177.1| hypothetical protein [Arabidopsis thaliana]
 gi|110736272|dbj|BAF00106.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250896|gb|AEC05990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330250897|gb|AEC05991.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 536

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 81/160 (50%), Gaps = 7/160 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G    A ++  ++   G  PDVV  T++I+ Y   GQ  +  R++  M A G
Sbjct: 318 LVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARG 377

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PNA+TY++LI  L      N   L  A++ L ++  K + P    Y  V + F +A K
Sbjct: 378 MFPNAFTYSILINALC-----NENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGK 432

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDK--RGQGFRGV 250
           V+EA  ++++M+ K   PD+      +I    +G+ F  V
Sbjct: 433 VNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAV 472



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 71/140 (50%), Gaps = 6/140 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHM-PDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
           +     K    ++A ++F  +K      PDVV +T++I  Y  AG+ +EA  +   ML  
Sbjct: 247 LIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRL 306

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           G+ P   T+ VL+ G A A +     +  A++   +M+  G  P+  T+T++ + + R  
Sbjct: 307 GIYPTNVTFNVLVDGYAKAGE-----MLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVG 361

Query: 212 KVDEARGLLQQMKAKGFVPD 231
           +V +   L ++M A+G  P+
Sbjct: 362 QVSQGFRLWEEMNARGMFPN 381



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/156 (23%), Positives = 62/156 (39%), Gaps = 8/156 (5%)

Query: 77  IFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           +      EG       + + L K     +A++LF +        D      +I      G
Sbjct: 161 LLQSFEVEGCCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVG 220

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN--AKILGDAQKYLMEMVGKGMR 194
           + ++AL +   M   G  P+  TY  LI+G   + + N  +++  D +       G    
Sbjct: 221 KAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKS------GSVCS 274

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           P+  TYT++   + +A K+ EA  LL  M   G  P
Sbjct: 275 PDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYP 310



 Score = 44.3 bits (103), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 36/154 (23%), Positives = 65/154 (42%), Gaps = 9/154 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           ++ +M   G+  NA     + +AL  +    +A +L  Q+  K  +P    +  VI+ + 
Sbjct: 369 LWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFC 428

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG+  EA  +   M      P+  T+ +LI G           + +A     +MV  G 
Sbjct: 429 KAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGR-----MFEAVSIFHKMVAIGC 483

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
            P+  T +++    ++A    EA   L Q+  KG
Sbjct: 484 SPDKITVSSLLSCLLKAGMAKEAYH-LNQIARKG 516


>gi|341605777|gb|AEK82991.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605779|gb|AEK82992.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605809|gb|AEK83007.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605811|gb|AEK83008.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 76/146 (52%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+G  +E   +F  +  KG  P+V  +T +I+ YA +G  ++A+R+  RM+  G  P
Sbjct: 26  GLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKP 85

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY+V++ GL      N ++  +A  Y       G+  N+  Y+++ +   +A ++DE
Sbjct: 86  DVVTYSVVVNGLCK----NGRV-EEALDYFQTCRFNGLAINSXFYSSLIDGLGKAGRIDE 140

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      ALID
Sbjct: 141 AERLFEEMSEKGCTRDSYCYN-ALID 165



 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 72/134 (53%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ D+G  PDVV ++ V+      G+ +EAL  F     +G
Sbjct: 58  LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNG 117

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +A N+  Y+ LI GL     G A  + +A++   EM  KG   ++  Y A+ +A  +  K
Sbjct: 118 LAINSXFYSSLIDGL-----GKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALXKHGK 172

Query: 213 VDEARGLLQQMKAK 226
           VDEA  L ++M+ +
Sbjct: 173 VDEAMTLFKRMEEE 186



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 6/143 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
            + L+ ++ +KG        + VI      G+  E   VF  M+  G  PN   Y VLI 
Sbjct: 1   CVALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLID 60

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G A +       + DA + L  M+ +G +P+  TY+ V     +  +V+EA    Q  + 
Sbjct: 61  GYAKSGS-----VEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRF 115

Query: 226 KGFVPDEKAVKEALIDKRGQGFR 248
            G   +      +LID  G+  R
Sbjct: 116 NGLAIN-SXFYSSLIDGLGKAGR 137


>gi|357115347|ref|XP_003559450.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Brachypodium distachyon]
          Length = 1102

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 8/168 (4%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +FH++++ G+  + +    M    SK     EA+++F+++ +   +PDV+A  ++I+ 
Sbjct: 481 KRVFHELKSIGVCPDNITYTMMIKCCSKASNADEAMKVFSEMIETRCVPDVLAVNSLIDT 540

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              AG+G EA ++F  +    + P   TY  L+ GL    +G  K   +    L EM   
Sbjct: 541 LYKAGRGNEAWKIFHELKEMNLDPTDCTYNTLLAGL--GREGKVK---EVMHLLEEMNSN 595

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
              PN  TY  V +   +  +V+ A G+L  M  KG +PD  +   AL
Sbjct: 596 SYPPNLITYNTVLDCLCKNGEVNYALGMLYNMTMKGCMPDLSSYNTAL 643



 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 94/213 (44%), Gaps = 34/213 (15%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D R++ EI++ M+ +G  +N V    + DAL + G   EA  +F Q+K KG  P   ++ 
Sbjct: 336 DSRSVIEIWNAMKADGYNDNVVAYTAVVDALCQVGRVDEASDVFDQMKQKGIEPQQYSYN 395

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD-------------- 172
           ++I  +  A +   AL +F  M   G  PN YTY + I     + +              
Sbjct: 396 SLISGFLKADRLNHALELFNHMNIHGPTPNGYTYVLFINYYGKSGESLKAIKRYELMKSK 455

Query: 173 --------GNAKI--------LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
                   GNA +        LG A++   E+   G+ P+  TYT + +   +A   DEA
Sbjct: 456 GIVPDVVAGNAVLYSLAKSGRLGMAKRVFHELKSIGVCPDNITYTMMIKCCSKASNADEA 515

Query: 217 RGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRG 249
             +  +M     VPD  AV  +LID   +  RG
Sbjct: 516 MKVFSEMIETRCVPDVLAVN-SLIDTLYKAGRG 547



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 78/160 (48%), Gaps = 10/160 (6%)

Query: 76   EIFHKMRTEGLTNNAVK----MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            E+F  M  +G+ N  +K    +  AL   G  +++L  F Q+ + G  PD++ +  +I  
Sbjct: 937  ELFQNMVDQGI-NPDIKSYTVLIGALCTAGRLNDSLSYFRQLTELGLEPDLITYNLLIHG 995

Query: 132  YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               +G+ +EA+ +F  M  SG+APN YTY  LI  L    +G A    +A K   E++  
Sbjct: 996  LGRSGRLEEAVSLFNDMEKSGIAPNLYTYNSLI--LYLGKEGKA---AEAGKMYEELLKN 1050

Query: 192  GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            G +PN  TY A+   +  +   D A     QM   G  P+
Sbjct: 1051 GWKPNVFTYNALIGGYSVSGSTDNAFASYGQMIVGGCPPN 1090



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 68/138 (49%), Gaps = 7/138 (5%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L + G   EA ++  +++D+G  PDVV +T +I+    AG+  +A  VF +M AS   P
Sbjct: 260 VLGQAGRFEEAYKILQKMEDEGCKPDVVTNTVLIQILCDAGRVSDAKDVFWKMKASDQKP 319

Query: 156 NAYTYAVLIKGLAAAADGNAKI-LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
           +  TY  L+       D  + I + +A K        G   N   YTAV +A  +  +VD
Sbjct: 320 DRVTYITLLDKCGDNGDSRSVIEIWNAMK------ADGYNDNVVAYTAVVDALCQVGRVD 373

Query: 215 EARGLLQQMKAKGFVPDE 232
           EA  +  QMK KG  P +
Sbjct: 374 EASDVFDQMKQKGIEPQQ 391



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 80/160 (50%), Gaps = 8/160 (5%)

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F+ M   G T N    V   +   K G + +A++ +  +K KG +PDVVA  AV+ + 
Sbjct: 412 ELFNHMNIHGPTPNGYTYVLFINYYGKSGESLKAIKRYELMKSKGIVPDVVAGNAVLYSL 471

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           A +G+   A RVF  + + GV P+  TY ++IK  + A++ +     +A K   EM+   
Sbjct: 472 AKSGRLGMAKRVFHELKSIGVCPDNITYTMMIKCCSKASNAD-----EAMKVFSEMIETR 526

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
             P+     ++ +   +A + +EA  +  ++K     P +
Sbjct: 527 CVPDVLAVNSLIDTLYKAGRGNEAWKIFHELKEMNLDPTD 566



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +++F KM+      + V    + D    +G +   ++++  +K  G+  +VVA+TAV++A
Sbjct: 306 KDVFWKMKASDQKPDRVTYITLLDKCGDNGDSRSVIEIWNAMKADGYNDNVVAYTAVVDA 365

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G+  EA  VF +M   G+ P  Y+Y  LI G        A  L  A +    M   
Sbjct: 366 LCQVGRVDEASDVFDQMKQKGIEPQQYSYNSLISGFL-----KADRLNHALELFNHMNIH 420

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G  PN  TY      + ++ +  +A    + MK+KG VPD
Sbjct: 421 GPTPNGYTYVLFINYYGKSGESLKAIKRYELMKSKGIVPD 460



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 79/160 (49%), Gaps = 8/160 (5%)

Query: 75   QEIFHKMRTEGLT-NNAVK--MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            +++F +M   G   N A+   + +     G T +  +LF  + D+G  PD+ ++T +I A
Sbjct: 901  EDLFDEMLDYGCKPNRAIYNILLNGYRLAGNTEKVCELFQNMVDQGINPDIKSYTVLIGA 960

Query: 132  YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              +AG+  ++L  F ++   G+ P+  TY +LI GL     G +  L +A     +M   
Sbjct: 961  LCTAGRLNDSLSYFRQLTELGLEPDLITYNLLIHGL-----GRSGRLEEAVSLFNDMEKS 1015

Query: 192  GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            G+ PN  TY ++     +  K  EA  + +++   G+ P+
Sbjct: 1016 GIAPNLYTYNSLILYLGKEGKAAEAGKMYEELLKNGWKPN 1055



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 79/177 (44%), Gaps = 14/177 (7%)

Query: 63  VVDEEPTDPRNLQEIFHKMRTEG-----LTNNAVKMFDALSKDGLTHEALQLFAQIKDKG 117
           +VDE   D    + +F +M+  G      T N +   DA+ K     + L++  ++  KG
Sbjct: 786 LVDENLIDVA--EGLFSEMKRLGCDPDEFTYNLI--LDAMGKSMRIEDMLKVQKEMHCKG 841

Query: 118 HMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKI 177
           +    V +  +I     +    EA+ ++ ++++ G +P   TY  L+ GL    DG  + 
Sbjct: 842 YESTYVTYNTIISGLVKSKMLYEAMDLYYKLMSEGFSPTPCTYGPLLDGL--LKDGKIE- 898

Query: 178 LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
             DA+    EM+  G +PN   Y  +   +  A   ++   L Q M  +G  PD K+
Sbjct: 899 --DAEDLFDEMLDYGCKPNRAIYNILLNGYRLAGNTEKVCELFQNMVDQGINPDIKS 953



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 75/163 (46%), Gaps = 9/163 (5%)

Query: 72  RNLQEIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R++ ++F  M+ + +  N    + +F +L  +G    A      +K+ G + +   +  +
Sbjct: 129 RDMAQVFDLMQRQIVKANVGTFLTIFRSLGMEGGLRSAPVALPMMKEAGIVLNSYTYNGL 188

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I     +G  +EA+ V+  M   G+ P+  TY+VL+             L      L EM
Sbjct: 189 IYFLVKSGYDREAMEVYKVMATDGIVPSVRTYSVLMLAFGKRDVETVVWL------LREM 242

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              G++PN  +YT       +A + +EA  +LQ+M+ +G  PD
Sbjct: 243 EDHGVKPNVYSYTICIRVLGQAGRFEEAYKILQKMEDEGCKPD 285



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/177 (22%), Positives = 80/177 (45%), Gaps = 13/177 (7%)

Query: 75  QEIFHKMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            E+  K  + G+   T +   +   L  + L   A  LF+++K  G  PD   +  +++A
Sbjct: 761 HELVKKFESLGVSLKTGSYNALICGLVDENLIDVAEGLFSEMKRLGCDPDEFTYNLILDA 820

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              + + ++ L+V   M   G      TY  +I GL       +K+L +A     +++ +
Sbjct: 821 MGKSMRIEDMLKVQKEMHCKGYESTYVTYNTIISGLV-----KSKMLYEAMDLYYKLMSE 875

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFR 248
           G  P   TY  + +  ++  K+++A  L  +M   G  P+ +A+   L++    G+R
Sbjct: 876 GFSPTPCTYGPLLDGLLKDGKIEDAEDLFDEMLDYGCKPN-RAIYNILLN----GYR 927



 Score = 44.7 bits (104), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 47/92 (51%), Gaps = 7/92 (7%)

Query: 77   IFHKMRTEGL-----TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            +F+ M   G+     T N++ ++  L K+G   EA +++ ++   G  P+V  + A+I  
Sbjct: 1008 LFNDMEKSGIAPNLYTYNSLILY--LGKEGKAAEAGKMYEELLKNGWKPNVFTYNALIGG 1065

Query: 132  YASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
            Y+ +G    A   + +M+  G  PN+ TY  L
Sbjct: 1066 YSVSGSTDNAFASYGQMIVGGCPPNSSTYMQL 1097



 Score = 36.6 bits (83), Expect = 9.9,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 70/184 (38%), Gaps = 33/184 (17%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMR-MLASGVA 154
            L K+    EA ++F Q+K K   PD      ++ ++   G   EAL      +L  G  
Sbjct: 645 GLVKEDRLTEAFRIFCQMK-KVLAPDYTTLCTILPSFVKNGLMNEALHTLKEYILQPGSK 703

Query: 155 PNAYTYAVLIKGLAAAADGNAKI------------------------LGDAQKYL--MEM 188
            +  ++  L++G+   A     I                        L  ++K L   E+
Sbjct: 704 ADRSSFHSLMEGILKRAGMEKSIEFAENIALSRILLDDFFLSPLIRHLCKSKKALEAHEL 763

Query: 189 VGK----GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRG 244
           V K    G+    G+Y A+    V    +D A GL  +MK  G  PDE      ++D  G
Sbjct: 764 VKKFESLGVSLKTGSYNALICGLVDENLIDVAEGLFSEMKRLGCDPDE-FTYNLILDAMG 822

Query: 245 QGFR 248
           +  R
Sbjct: 823 KSMR 826


>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 550

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 72/139 (51%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D+L K    ++AL  F +I  KG  P+VV +TA++    ++G+  +A R+   M+   
Sbjct: 196 IIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAARLLRDMIKRK 255

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN  TY+ L+         N K+L +A++   EMV   + P+  TY+++        +
Sbjct: 256 ITPNVITYSALLDAFVK----NGKVL-EAKEIFEEMVRMSIDPDIVTYSSLINGLCLHDR 310

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +DEA  +   M +KG  PD
Sbjct: 311 IDEANQMFDLMVSKGCFPD 329



 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 70/127 (55%), Gaps = 5/127 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +A+ L  ++ + G+ PD+VA+ A+I++     +  +AL  F  +   G+ PN  TY  L+
Sbjct: 173 DAVSLVDKMVEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALV 232

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            GL  +   N     DA + L +M+ + + PN  TY+A+ +AFV+  KV EA+ + ++M 
Sbjct: 233 NGLCNSGRWN-----DAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMV 287

Query: 225 AKGFVPD 231
                PD
Sbjct: 288 RMSIDPD 294



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 67/139 (48%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DA  K+G   EA ++F ++      PD+V ++++I       +  EA ++F  M++ G
Sbjct: 266 LLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKG 325

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  +Y  LI G        AK + D  K   +M  +G+  N  TY  + + F +   
Sbjct: 326 CFPDVVSYNTLINGFC-----KAKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFFQVGD 380

Query: 213 VDEARGLLQQMKAKGFVPD 231
           VD+A+    QM + G  PD
Sbjct: 381 VDKAQEFFSQMDSFGVSPD 399



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 89/222 (40%), Gaps = 45/222 (20%)

Query: 50  KSKLPPPYDPFKKVVDEEPTDPRNLQ--EIFHKMRTEGLTNNAV---KMFDALSKDGLTH 104
           K K+ P    +  ++D    + + L+  EIF +M    +  + V    + + L       
Sbjct: 253 KRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLINGLCLHDRID 312

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA Q+F  +  KG  PDVV++  +I  +  A + ++ +++F +M   G+  N  TY  LI
Sbjct: 313 EANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLI 372

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAG-------------------------- 198
           +G     D     +  AQ++  +M   G+ P+                            
Sbjct: 373 QGFFQVGD-----VDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDNGLLEKALVIFEDMQ 427

Query: 199 ---------TYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
                    TYT V +   +  KV++A GL   +  KG  PD
Sbjct: 428 KSEMDLDIVTYTTVIQGMCKTGKVEDAWGLFCSLSLKGLKPD 469



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 69/160 (43%), Gaps = 8/160 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F KM   GL NN V    +     + G   +A + F+Q+   G  PD+  +  ++   
Sbjct: 351 KLFRKMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGL 410

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G  ++AL +F  M  S +  +  TY  +I+G+          + DA      +  KG
Sbjct: 411 CDNGLLEKALVIFEDMQKSEMDLDIVTYTTVIQGMCKTGK-----VEDAWGLFCSLSLKG 465

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           ++P+  TYT +           E   L  +MK +G + ++
Sbjct: 466 LKPDIVTYTTMMSGLCTKGLQHEVEALYTKMKQEGLMKND 505



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 5/115 (4%)

Query: 117 GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK 176
           G   D+     VI  +    Q   AL V  +ML  G  P+  T   L+ G          
Sbjct: 115 GIRNDLYTFNIVINCFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFC-----RRN 169

Query: 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            + DA   + +MV  G RP+   Y A+ ++  + ++V++A    +++  KG  P+
Sbjct: 170 RVSDAVSLVDKMVEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPN 224



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 3/98 (3%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           QE F +M + G++ +      +   L  +GL  +AL +F  ++      D+V +T VI+ 
Sbjct: 385 QEFFSQMDSFGVSPDIWTYNILLGGLCDNGLLEKALVIFEDMQKSEMDLDIVTYTTVIQG 444

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169
               G+ ++A  +F  +   G+ P+  TY  ++ GL  
Sbjct: 445 MCKTGKVEDAWGLFCSLSLKGLKPDIVTYTTMMSGLCT 482


>gi|255660868|gb|ACU25603.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
          Length = 484

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 12/168 (7%)

Query: 78  FHKMRTEGL-----TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           F+KM +EG+     T N   M       G    A + F  +K +   PDVV +  +I  Y
Sbjct: 138 FNKMLSEGIEPTRHTFNV--MIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGY 195

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               + +EA + F+ M    + P   TY  LIKG  +        + DA + + EM G G
Sbjct: 196 YRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQ-----VDDALRLVEEMKGFG 250

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
           ++PNA TY+ +      A+K+ EAR +L++M  K   P + ++   LI
Sbjct: 251 IKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLI 298



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 83/171 (48%), Gaps = 30/171 (17%)

Query: 91  VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           V M D+  K+G+  E++++F ++++ G    + ++ A+ +     G+   A R F +ML+
Sbjct: 84  VMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLS 143

Query: 151 SGVAPNAYTYAVLIKGLAAAA----------------------------DGNAKI--LGD 180
            G+ P  +T+ V+I G   +                             +G  ++  + +
Sbjct: 144 EGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEE 203

Query: 181 AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           A+KY +EM G+ + P   TYT + + +V   +VD+A  L+++MK  G  P+
Sbjct: 204 AEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPN 254



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 75/151 (49%), Gaps = 9/151 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
            F  M++  ++ + V    M +   +     EA + F ++K +   P VV +T +I+ Y 
Sbjct: 172 FFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYV 231

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
           S  Q  +ALR+   M   G+ PNA TY+ L+ GL      NA+ + +A+  L EM+ K +
Sbjct: 232 SVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLC-----NAEKMSEARVILKEMMDKYL 286

Query: 194 RP-NAGTYTAVFEAFVRAQKVDEARGLLQQM 223
            P +   +  +  +  ++  +D A  +L+ M
Sbjct: 287 APTDNSIFMRLISSHCKSGNLDAAADVLKAM 317


>gi|357127305|ref|XP_003565323.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Brachypodium distachyon]
          Length = 746

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 80/170 (47%), Gaps = 8/170 (4%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
             ++  M   G+  N V    M D L++ G   EA  LF ++ +   +P+++ +++++  
Sbjct: 473 SRVWDTMVAAGIKPNVVLYSAMIDGLARCGKMTEAELLFREMIEAKCVPNIMTYSSMVRG 532

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y   G   +AL  +  ML  G  PNA TY+VLI GL     G +K   DA      M+G+
Sbjct: 533 YFQIGDSSQALSFWEDMLRIGCTPNAVTYSVLINGLCNV--GRSK---DAMMVWKHMLGR 587

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           G  P+   YT++ + F  +  VD    L   M A+G    +      L+D
Sbjct: 588 GCVPDTIAYTSMIKGFCVSGMVDAGLRLFYDMLARGDTHPDVICYNVLLD 637



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 77/169 (45%), Gaps = 12/169 (7%)

Query: 77  IFHKMRTEGLTNNAVKMFD----ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           + H+M  +G+   A + F+    A+ + G    A +LF+ ++ KG  P    +  ++   
Sbjct: 336 LVHEMVVDGVV--AAEAFNPVLGAMLRTGDVTGAAKLFSFMQLKGCAPSAATYNVLLHGL 393

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+ K A+ V  RM  + V P   TY  ++ GL          L DA K + EM  KG
Sbjct: 394 LLCGRAKAAMGVMRRMERAEVVPGVMTYGAVVDGLVRCGR-----LEDACKVIEEMRSKG 448

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           + PN   ++ V   F +  +VD A  +   M A G  P+   +  A+ID
Sbjct: 449 LVPNEFVFSPVITGFCKLGEVDRASRVWDTMVAAGIKPN-VVLYSAMID 496



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 5/137 (3%)

Query: 95  DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           D L + G   +A ++  +++ KG +P+    + VI  +   G+   A RV+  M+A+G+ 
Sbjct: 426 DGLVRCGRLEDACKVIEEMRSKGLVPNEFVFSPVITGFCKLGEVDRASRVWDTMVAAGIK 485

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
           PN   Y+ +I GLA         + +A+    EM+     PN  TY+++   + +     
Sbjct: 486 PNVVLYSAMIDGLARCGK-----MTEAELLFREMIEAKCVPNIMTYSSMVRGYFQIGDSS 540

Query: 215 EARGLLQQMKAKGFVPD 231
           +A    + M   G  P+
Sbjct: 541 QALSFWEDMLRIGCTPN 557



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 39/148 (26%)

Query: 119 MPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGV------------------------- 153
           +PD   ++ V+ A A AG+  +A+ +   M+  GV                         
Sbjct: 311 VPDKFTYSTVVSALADAGRVDDAVALVHEMVVDGVVAAEAFNPVLGAMLRTGDVTGAAKL 370

Query: 154 ---------APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVF 204
                    AP+A TY VL+ GL     G AK    A   +  M    + P   TY AV 
Sbjct: 371 FSFMQLKGCAPSAATYNVLLHGLLLC--GRAKA---AMGVMRRMERAEVVPGVMTYGAVV 425

Query: 205 EAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           +  VR  ++++A  ++++M++KG VP+E
Sbjct: 426 DGLVRCGRLEDACKVIEEMRSKGLVPNE 453


>gi|341605775|gb|AEK82990.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605807|gb|AEK83006.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 76/146 (52%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+G  +E   +F  +  KG  P+V  +T +I+ YA +G  ++A+R+  RM+  G  P
Sbjct: 26  GLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKP 85

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY+V++ GL      N ++  +A  Y       G+  N+  Y+++ +   +A ++DE
Sbjct: 86  DVVTYSVVVNGLCK----NGRV-EEALDYFQTCRFNGLAINSXFYSSLIDGLGKAGRIDE 140

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      ALID
Sbjct: 141 AERLFEEMSEKGCTRDSYCYN-ALID 165



 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 72/134 (53%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ D+G  PDVV ++ V+      G+ +EAL  F     +G
Sbjct: 58  LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNG 117

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +A N+  Y+ LI GL     G A  + +A++   EM  KG   ++  Y A+ +A  +  K
Sbjct: 118 LAINSXFYSSLIDGL-----GKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALXKHGK 172

Query: 213 VDEARGLLQQMKAK 226
           VDEA  L ++M+ +
Sbjct: 173 VDEAMXLFKRMEEE 186



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 6/143 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
            + L+ ++ +KG        + VI      G+  E   VF  M+  G  PN   Y VLI 
Sbjct: 1   CVALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLID 60

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G A +       + DA + L  M+ +G +P+  TY+ V     +  +V+EA    Q  + 
Sbjct: 61  GYAKSGS-----VEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRF 115

Query: 226 KGFVPDEKAVKEALIDKRGQGFR 248
            G   +      +LID  G+  R
Sbjct: 116 NGLAIN-SXFYSSLIDGLGKAGR 137


>gi|449493486|ref|XP_004159312.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 772

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 45/137 (32%), Positives = 70/137 (51%), Gaps = 5/137 (3%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
           AL + G   EA  L   +   G +PD V +T++I  +   G  ++A  VF  ML+ GVAP
Sbjct: 504 ALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAP 563

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY VLI   AA      ++L  A  Y  +M+ K +  N  TY A+       +++DE
Sbjct: 564 SVVTYTVLIHAHAA-----KQMLDLAFMYFSKMLEKSVPANVITYNAIINGLCMTRRMDE 618

Query: 216 ARGLLQQMKAKGFVPDE 232
           A     +M+ KG +P++
Sbjct: 619 AYKYFDEMEEKGILPNK 635



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/159 (28%), Positives = 74/159 (46%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++   M ++GL  + V    + +   K+G   +A ++F ++  KG  P VV +T +I A+
Sbjct: 516 DLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAH 575

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           A+      A   F +ML   V  N  TY  +I GL        + + +A KY  EM  KG
Sbjct: 576 AAKQMLDLAFMYFSKMLEKSVPANVITYNAIINGLCMT-----RRMDEAYKYFDEMEEKG 630

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + PN  +YT +          +EA  L ++M  +   PD
Sbjct: 631 ILPNKFSYTILINESCNMGYWEEALRLYREMLDRKIQPD 669



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/157 (26%), Positives = 72/157 (45%), Gaps = 8/157 (5%)

Query: 77  IFHKMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F KM   GL     N  ++   L  + L  +A  ++  ++  G  P VV +  ++++Y 
Sbjct: 167 VFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYC 226

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G+  +AL +   M   G  PN  TY VL+ GL+   +     L  A+  + EM+  G+
Sbjct: 227 KEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGE-----LEQAKGLIEEMLNSGL 281

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
             +A TY  +   F +     EA  L+++M  +   P
Sbjct: 282 NVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRAFP 318



 Score = 60.8 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M D+  K+G   +AL+L ++++++G  P+ V +  ++   +  G+ ++A  +   ML SG
Sbjct: 221 MLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSG 280

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +  +AYTY  LI G          +  +A   + EMV +   P   TY  +     +  +
Sbjct: 281 LNVSAYTYNPLINGFCQKG-----LFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQ 335

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V   R     M    F PD
Sbjct: 336 VTGVRLRFSDMLKSKFTPD 354



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 5/133 (3%)

Query: 99  KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAY 158
           + G   EA  LF ++K +  +P V+ +  +I      G    ALR+   M   G+ P+ +
Sbjct: 367 RTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIF 426

Query: 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218
           TY +L+ G           +  A+ +  EM+ KG++P+   Y       ++      A  
Sbjct: 427 TYTILVNGCFKLG-----YVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFS 481

Query: 219 LLQQMKAKGFVPD 231
           + ++M A GF PD
Sbjct: 482 MQEEMLAAGFPPD 494



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/132 (29%), Positives = 58/132 (43%), Gaps = 5/132 (3%)

Query: 99  KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAY 158
           K G    A   F ++  KG  PD  A+   I           A  +   MLA+G  P+  
Sbjct: 437 KLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVI 496

Query: 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218
           TY V +  L     GN +   +A   L  MV  G+ P+  TYT++   FV+   + +AR 
Sbjct: 497 TYNVFVHAL--CQQGNFE---EACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKARE 551

Query: 219 LLQQMKAKGFVP 230
           +  +M +KG  P
Sbjct: 552 VFNEMLSKGVAP 563



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 5/131 (3%)

Query: 110 FAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169
           F+ +      PD+V+  +++  Y   G   EA  +F  +    + P   TY  LI GL  
Sbjct: 343 FSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCM 402

Query: 170 AADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFV 229
                   L  A +   EM  +G+ P+  TYT +     +   V  ARG   +M +KG  
Sbjct: 403 WG-----YLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLK 457

Query: 230 PDEKAVKEALI 240
           PD  A    ++
Sbjct: 458 PDRFAYNTRIV 468



 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 51/93 (54%), Gaps = 3/93 (3%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F KM  + +  N +    + + L       EA + F ++++KG +P+  ++T +I    +
Sbjct: 588 FSKMLEKSVPANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCN 647

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
            G  +EALR++  ML   + P+++T++V +K L
Sbjct: 648 MGYWEEALRLYREMLDRKIQPDSFTHSVFLKNL 680



 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/145 (21%), Positives = 68/145 (46%), Gaps = 8/145 (5%)

Query: 72  RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R  +E+F++M ++G+  + V    +  A +   +   A   F+++ +K    +V+ + A+
Sbjct: 547 RKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAI 606

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I       +  EA + F  M   G+ PN ++Y +LI         N     +A +   EM
Sbjct: 607 INGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILIN-----ESCNMGYWEEALRLYREM 661

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKV 213
           + + ++P++ T++   +   R  +V
Sbjct: 662 LDRKIQPDSFTHSVFLKNLHRDYQV 686



 Score = 40.4 bits (93), Expect = 0.65,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 51/122 (41%), Gaps = 5/122 (4%)

Query: 107 LQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKG 166
           L +F ++   G +PDV     ++          +A  V+  M   G+ P   TY  ++  
Sbjct: 165 LLVFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDS 224

Query: 167 LAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK 226
                      +  A + L EM  +G  PN  TY  +     +  ++++A+GL+++M   
Sbjct: 225 YCKEGR-----VDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNS 279

Query: 227 GF 228
           G 
Sbjct: 280 GL 281



 Score = 40.0 bits (92), Expect = 1.0,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 5/91 (5%)

Query: 142 LRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYT 201
           L VF +M+ +G+ P+      +++ L      +  +L  A+     M   G++P   TY 
Sbjct: 165 LLVFDKMIRNGLLPDVKNCNRILRVLR-----DENLLSKAKNVYGMMEQFGIKPTVVTYN 219

Query: 202 AVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
            + +++ +  +VD+A  LL +M+ +G  P++
Sbjct: 220 TMLDSYCKEGRVDQALELLSEMQERGCYPND 250


>gi|297830278|ref|XP_002883021.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328861|gb|EFH59280.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 504

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 77/159 (48%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           EIF++M   G+  N V    +   L + G   +A  L   +  +G  P+V+  TA+I+A+
Sbjct: 208 EIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMKRGIQPNVITFTALIDAF 267

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+  EA  ++  M+   V P+ +TY  LI GL          L +A++    M   G
Sbjct: 268 VKVGKIMEAKELYKVMIQMSVYPDVFTYTALINGLCTYGR-----LDEARQMFYLMESNG 322

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             PN  TYT +   F ++++V++   +  +M  KG V +
Sbjct: 323 YYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVAN 361



 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 68/136 (50%), Gaps = 10/136 (7%)

Query: 101 GLTH-----EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
           G  H     +AL LF QI   G  P+VV +T +I           A+ +F +M  +G+ P
Sbjct: 161 GFCHWNRIEDALALFDQIVGMGFRPNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRP 220

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           N  TY  L+ GL      +     DA   L +M+ +G++PN  T+TA+ +AFV+  K+ E
Sbjct: 221 NVVTYNSLVSGLCEIGRWS-----DAAWLLRDMMKRGIQPNVITFTALIDAFVKVGKIME 275

Query: 216 ARGLLQQMKAKGFVPD 231
           A+ L + M      PD
Sbjct: 276 AKELYKVMIQMSVYPD 291



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 75/162 (46%), Gaps = 8/162 (4%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +IF++M  +GL  N +    +       G    A ++F Q+  +   PD+  +  +++  
Sbjct: 348 KIFYEMSQKGLVANTITYTVLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNVLLDGL 407

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G  ++AL +F  M    +  N  TY ++I+G+          + DA      +  KG
Sbjct: 408 CYNGYVEKALMIFKYMRKREMDINIVTYTIIIQGMCKVGK-----VEDAFDLFCSLFSKG 462

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
           M+PN  TYT +   F R   + EA  L ++MK  GF+P+E  
Sbjct: 463 MKPNVITYTTMISGFCRRGFIHEADALFKKMKEDGFLPNESV 504



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 76/159 (47%), Gaps = 8/159 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F ++   G   N V    +   L K+   + A+++F Q+ D G  P+VV + +++    
Sbjct: 174 LFDQIVGMGFRPNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLC 233

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G+  +A  +   M+  G+ PN  T+  LI           KI+ +A++    M+   +
Sbjct: 234 EIGRWSDAAWLLRDMMKRGIQPNVITFTALIDAFVKV----GKIM-EAKELYKVMIQMSV 288

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
            P+  TYTA+        ++DEAR +   M++ G+ P+E
Sbjct: 289 YPDVFTYTALINGLCTYGRLDEARQMFYLMESNGYYPNE 327



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 79/174 (45%), Gaps = 11/174 (6%)

Query: 81  MRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ 137
           M   G+  N +    + DA  K G   EA +L+  +      PDV  +TA+I    + G+
Sbjct: 248 MMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALINGLCTYGR 307

Query: 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA 197
             EA ++F  M ++G  PN  TY  LI G        +K + D  K   EM  KG+  N 
Sbjct: 308 LDEARQMFYLMESNGYYPNEVTYTTLIHGFC-----KSKRVEDGTKIFYEMSQKGLVANT 362

Query: 198 GTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVI 251
            TYT + + +    + D A+ +  QM ++   PD +     L+D  G  + G +
Sbjct: 363 ITYTVLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTY-NVLLD--GLCYNGYV 413



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 72/169 (42%), Gaps = 30/169 (17%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L   G   EA Q+F  ++  G+ P+ V +T +I  +  + + ++  ++F  M   G
Sbjct: 298 LINGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKG 357

Query: 153 VAPNAYTYAVLIKGLAAAAD-----------GNAKILGDAQKY--LME------------ 187
           +  N  TY VLI+G                 G+ +   D + Y  L++            
Sbjct: 358 LVANTITYTVLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNVLLDGLCYNGYVEKAL 417

Query: 188 MVGKGMRP-----NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           M+ K MR      N  TYT + +   +  KV++A  L   + +KG  P+
Sbjct: 418 MIFKYMRKREMDINIVTYTIIIQGMCKVGKVEDAFDLFCSLFSKGMKPN 466



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/128 (22%), Positives = 61/128 (47%), Gaps = 5/128 (3%)

Query: 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
           +EAL LF ++     +P +V  T ++   A   +    + +F +M   G++P  YT  ++
Sbjct: 64  NEALDLFTRMVHSRPLPSIVDFTRLLSVIAKMKRFDVVISLFEQMQILGISPVLYTCNIV 123

Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           +  +  ++         A  +L +M+  G  P+  T+T++   F    ++++A  L  Q+
Sbjct: 124 MNCVCRSSQP-----CRASCFLGKMMKLGFEPDLVTFTSLLHGFCHWNRIEDALALFDQI 178

Query: 224 KAKGFVPD 231
              GF P+
Sbjct: 179 VGMGFRPN 186


>gi|255557625|ref|XP_002519842.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540888|gb|EEF42446.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 677

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 69/131 (52%), Gaps = 7/131 (5%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           AL+ F ++   G MPD V ++A+++ YA  G+ +E L ++ R +ASG  P+  T++VL K
Sbjct: 251 ALEWFERMYKTGLMPDEVTYSAILDVYAKLGRVEEVLSLYERGVASGWKPDPITFSVLAK 310

Query: 166 GLAAAADGNAKILGDAQKY-LMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
               A D       D  +Y L EM    ++PN   Y  + EA  +A K   AR L  +M 
Sbjct: 311 MFGEAGD------YDGIRYVLQEMKSLAVQPNVVVYNTLLEAMGKAGKPGLARSLFDEMV 364

Query: 225 AKGFVPDEKAV 235
             G  P+EK +
Sbjct: 365 ESGLTPNEKTL 375



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 70/159 (44%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E F +M   GL  + V    + D  +K G   E L L+ +    G  PD +  + + + +
Sbjct: 253 EWFERMYKTGLMPDEVTYSAILDVYAKLGRVEEVLSLYERGVASGWKPDPITFSVLAKMF 312

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             AG       V   M +  V PN   Y  L++ +     G A   G A+    EMV  G
Sbjct: 313 GEAGDYDGIRYVLQEMKSLAVQPNVVVYNTLLEAM-----GKAGKPGLARSLFDEMVESG 367

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + PN  T TA+ + + +A+   +A  L ++M++  +  D
Sbjct: 368 LTPNEKTLTALAKIYGKARWAKDAMELWERMRSNDWPMD 406



 Score = 37.7 bits (86), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 54/134 (40%), Gaps = 10/134 (7%)

Query: 92  KMF-DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           KMF +A   DG+ +    +  ++K     P+VV +  ++EA   AG+   A  +F  M+ 
Sbjct: 310 KMFGEAGDYDGIRY----VLQEMKSLAVQPNVVVYNTLLEAMGKAGKPGLARSLFDEMVE 365

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
           SG+ PN  T   L K       G A+   DA +    M       +   Y  +       
Sbjct: 366 SGLTPNEKTLTALAKIY-----GKARWAKDAMELWERMRSNDWPMDFILYNTLLSMCADL 420

Query: 211 QKVDEARGLLQQMK 224
               EA  L + MK
Sbjct: 421 GMEKEAETLFEDMK 434


>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 79/159 (49%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++  +MR  G T + V    + + + K+G   EA++    +   G  P+V+ H  ++ + 
Sbjct: 260 KLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSM 319

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
            S G+  +A ++   ML  G +P+  T+ +LI  L         +LG A   L +M   G
Sbjct: 320 CSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKG-----LLGRAIDILEKMPKHG 374

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +PN+ +Y  +   F + +K+D A   L++M ++G  PD
Sbjct: 375 CQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPD 413



 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 79/162 (48%), Gaps = 8/162 (4%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E   +M + G   + V    M  AL KDG   +A+++  Q+  KG  P ++ +  VI+  
Sbjct: 400 EYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGL 459

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           A AG+  +A+++   M A  + P+  TY+ L+ GL+         + +A K+  E    G
Sbjct: 460 AKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGK-----VDEAIKFFHEFERMG 514

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
           +RPNA T+ ++     + ++ D A   L  M  +G  P E +
Sbjct: 515 VRPNAVTFNSIMLGLCKTRQTDRAIDFLVYMINRGCKPTETS 556



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 69/139 (49%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +A  +D    +A++L  +++D+G  PDVV +  ++      G+  EA++    M +SG
Sbjct: 245 LIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSG 304

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN  T+ ++++ + +          DA+K L +M+ KG  P+  T+  +     R   
Sbjct: 305 CQPNVITHNIILRSMCSTGR-----WMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGL 359

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +  A  +L++M   G  P+
Sbjct: 360 LGRAIDILEKMPKHGCQPN 378



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 80/164 (48%), Gaps = 12/164 (7%)

Query: 76  EIFHKMRTEG-----LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           EI +++ ++G     +T N V   D L+K G T +A++L  +++ K   PD + +++++ 
Sbjct: 435 EILNQLSSKGCSPVLITYNTV--IDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVG 492

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
             +  G+  EA++ F      GV PNA T+  ++ GL      +  I      +L+ M+ 
Sbjct: 493 GLSREGKVDEAIKFFHEFERMGVRPNAVTFNSIMLGLCKTRQTDRAI-----DFLVYMIN 547

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
           +G +P   +YT + E         EA  LL ++  KG +    A
Sbjct: 548 RGCKPTETSYTILIEGLAYEGMAKEALELLNELCNKGLMKRSSA 591



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +I  KM   G   N++    +     K+     A++   ++  +G  PD+V +  ++ A 
Sbjct: 365 DILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTAL 424

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+ ++A+ +  ++ + G +P   TY  +I GLA A        G A K L EM  K 
Sbjct: 425 CKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGK-----TGKAIKLLDEMRAKD 479

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           ++P+  TY+++     R  KVDEA     + +  G  P+
Sbjct: 480 LKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGVRPN 518



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 64/139 (46%), Gaps = 8/139 (5%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M     K G  + AL +  ++      PDVV +  ++ +   +G+ K+A+ V  RML   
Sbjct: 178 MISGYCKAGEINNALSVLDRMSVS---PDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRD 234

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  TY +LI+  A   D     +G A K L EM  +G  P+  TY  +     +  +
Sbjct: 235 CYPDVITYTILIE--ATCRDSG---VGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGR 289

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +DEA   L  M + G  P+
Sbjct: 290 LDEAIKFLNDMPSSGCQPN 308



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 64/138 (46%), Gaps = 5/138 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +  +L   G   +A+++  ++  +   PDV+ +T +IEA        +A+++   M   G
Sbjct: 210 ILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRG 269

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  TY VL+ G+          L +A K+L +M   G +PN  T+  +  +     +
Sbjct: 270 CTPDVVTYNVLVNGICKEGR-----LDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGR 324

Query: 213 VDEARGLLQQMKAKGFVP 230
             +A  LL  M  KGF P
Sbjct: 325 WMDAEKLLADMLRKGFSP 342



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 72/172 (41%), Gaps = 30/172 (17%)

Query: 87  TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFM 146
           +NN ++    L + G   E  +    +   G++PD++  T +I  +   G+ ++A ++  
Sbjct: 105 SNNHLR---QLVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRMGKTRKAAKILE 161

Query: 147 RMLASGVAPNAYTYAVLIKGLAAAADGNAKI---------------------------LG 179
            +  SG  P+  TY V+I G   A + N  +                           L 
Sbjct: 162 VLEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVSPDVVTYNTILRSLCDSGKLK 221

Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            A + L  M+ +   P+  TYT + EA  R   V +A  LL +M+ +G  PD
Sbjct: 222 QAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPD 273



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L + GL   A+ +  ++   G  P+ +++  ++  +    +   A+    RM++ G
Sbjct: 350 LINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRG 409

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  TY  ++  L    DG  +   DA + L ++  KG  P   TY  V +   +A K
Sbjct: 410 CYPDIVTYNTMLTAL--CKDGKVE---DAVEILNQLSSKGCSPVLITYNTVIDGLAKAGK 464

Query: 213 VDEARGLLQQMKAKGFVPD 231
             +A  LL +M+AK   PD
Sbjct: 465 TGKAIKLLDEMRAKDLKPD 483


>gi|296088470|emb|CBI37461.3| unnamed protein product [Vitis vinifera]
          Length = 822

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/139 (30%), Positives = 77/139 (55%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L + G   E   LF+    +G   DVV  +++++AY   G   +A+ V+ RML  G
Sbjct: 316 LINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEG 375

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           ++PN  TY++LI GL      N ++L +A     +++ +G+ P+  TY+++ + F +++ 
Sbjct: 376 ISPNVVTYSILINGLCR----NGRVL-EACGVFGQILKQGLEPSVLTYSSLIDGFCKSEN 430

Query: 213 VDEARGLLQQMKAKGFVPD 231
           + +  GL   M  KG VPD
Sbjct: 431 LRDGFGLYGIMLRKGHVPD 449



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 80/167 (47%), Gaps = 8/167 (4%)

Query: 74  LQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           L E+    RT+        + DA  KDG   +A+ +F+ + ++G  P+++ ++ +I+ Y 
Sbjct: 647 LFEVLKCGRTQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYSCLIDGYF 706

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
                + A  ++ +ML   V+PN  +Y++LI GL         ++ +A       +G+ +
Sbjct: 707 KTENTESAFELYEKMLGDRVSPNIVSYSILIDGLCKKG-----LMEEASLAFQCAIGRHL 761

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD---EKAVKE 237
            P+   Y  +   + +  ++ EA  L   M   G +PD   +KA+ E
Sbjct: 762 LPDVIAYGILIRGYCKVGRLAEAMMLYDHMLVNGIMPDDLLQKALAE 808



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F ++  +GL  + +    + D   K     +   L+  +  KGH+PDVV  + +I   +
Sbjct: 402 VFGQILKQGLEPSVLTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLS 461

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G   EALR F + +  G+  N Y +  LI G         K   D  K  + M    +
Sbjct: 462 RQGMMDEALRFFFQAVKRGLTLNNYLFNALIDGCF-----RLKRTRDGLKMYILMGMYKV 516

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            P+  TYT + +      ++DEA  L  Q+  KGF PD
Sbjct: 517 IPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPD 554



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 14/168 (8%)

Query: 70  DPRNLQEIFHKMRTEGL------TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVV 123
           DP    +IF  M++ G+       N  + MF    ++G     L+L  +I   G  PD+V
Sbjct: 570 DPATGLQIFKLMQSNGIFPDICIYNVLINMF---FREGCVENVLELLREIIKYGLEPDIV 626

Query: 124 AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQK 183
            +  +I  Y S     +A+++F  +      PNA T+ +LI   A   DG    + DA  
Sbjct: 627 TYNTMICGYCSLKIFSKAIKLFEVLKCGRTQPNAITFTILID--AYCKDGR---MDDAML 681

Query: 184 YLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
               M+ +G  PN  TY+ + + + + +  + A  L ++M      P+
Sbjct: 682 IFSSMLERGPEPNILTYSCLIDGYFKTENTESAFELYEKMLGDRVSPN 729



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 12/159 (7%)

Query: 78  FHKMRTEGLTNNAVKMFDALSKDGL-----THEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           F +    GLT N   +F+AL  DG      T + L+++  +     +PDVV +T +++  
Sbjct: 473 FFQAVKRGLTLNNY-LFNALI-DGCFRLKRTRDGLKMYILMGMYKVIPDVVTYTVLVKGL 530

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           A  G+  EAL +F ++L  G +P+   Y  LI G     D    +     +    M   G
Sbjct: 531 AEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGL-----QIFKLMQSNG 585

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + P+   Y  +   F R   V+    LL+++   G  PD
Sbjct: 586 IFPDICIYNVLINMFFREGCVENVLELLREIIKYGLEPD 624



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 74/159 (46%), Gaps = 10/159 (6%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F ++  +G + + +    + D   K       LQ+F  ++  G  PD+  +  +I  + 
Sbjct: 542 LFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFPDICIYNVLINMFF 601

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG- 192
             G  +  L +   ++  G+ P+  TY  +I G  +      KI   A K L E++  G 
Sbjct: 602 REGCVENVLELLREIIKYGLEPDIVTYNTMICGYCS-----LKIFSKAIK-LFEVLKCGR 655

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +PNA T+T + +A+ +  ++D+A  +   M  +G  P+
Sbjct: 656 TQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPN 694



 Score = 45.4 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +F++  K G   + L     + ++G +P +V    +++      Q   A   F  M+ SG
Sbjct: 211 VFNSFLKRGEVEKGLNFHRALVERGLVPKIVDCNKILKGLCMGNQIGVASDFFDMMVRSG 270

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            +PN  T++ LI             L +A      M+ KG+ P+   Y+ +     RA K
Sbjct: 271 PSPNLVTFSTLINVYCKELR-----LDEAFSLYNLMIEKGIVPDLVIYSILINGLFRAGK 325

Query: 213 VDEARGLLQQMKAKGFVPD 231
           ++E   L     A+G   D
Sbjct: 326 LEEGNSLFSMALARGVKMD 344



 Score = 45.1 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 21/170 (12%)

Query: 77  IFHKMRTEGLTNNAVKMFDALSKDGLT---HEALQLFAQIKDKGHMPDVV---------- 123
           + H     G+ + AV  F  +SK G++   + A ++   + D   + DV+          
Sbjct: 146 LLHCYCRNGMVDRAVDTFAWMSKMGVSISHYAASEMLDLLIDSDRI-DVILENYEEMCKG 204

Query: 124 --AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDA 181
              +  V  ++   G+ ++ L     ++  G+ P       ++KGL     GN   +G A
Sbjct: 205 LGVYEFVFNSFLKRGEVEKGLNFHRALVERGLVPKIVDCNKILKGLCM---GNQ--IGVA 259

Query: 182 QKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             +   MV  G  PN  T++ +   + +  ++DEA  L   M  KG VPD
Sbjct: 260 SDFFDMMVRSGPSPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVPD 309


>gi|225427506|ref|XP_002263778.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g31840-like [Vitis vinifera]
          Length = 1131

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/139 (30%), Positives = 77/139 (55%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L + G   E   LF+    +G   DVV  +++++AY   G   +A+ V+ RML  G
Sbjct: 316 LINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEG 375

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           ++PN  TY++LI GL      N ++L +A     +++ +G+ P+  TY+++ + F +++ 
Sbjct: 376 ISPNVVTYSILINGLCR----NGRVL-EACGVFGQILKQGLEPSVLTYSSLIDGFCKSEN 430

Query: 213 VDEARGLLQQMKAKGFVPD 231
           + +  GL   M  KG VPD
Sbjct: 431 LRDGFGLYGIMLRKGHVPD 449



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/167 (23%), Positives = 80/167 (47%), Gaps = 8/167 (4%)

Query: 74  LQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           L E+    RT+        + DA  KDG   +A+ +F+ + ++G  P+++ ++ +I+ Y 
Sbjct: 647 LFEVLKCGRTQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYSCLIDGYF 706

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
                + A  ++ +ML   V+PN  +Y++LI GL         ++ +A       +G+ +
Sbjct: 707 KTENTESAFELYEKMLGDRVSPNIVSYSILIDGLCKKG-----LMEEASLAFQCAIGRHL 761

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD---EKAVKE 237
            P+   Y  +   + +  ++ EA  L   M   G +PD   +KA+ E
Sbjct: 762 LPDVIAYGILIRGYCKVGRLAEAMMLYDHMLVNGIMPDDLLQKALAE 808



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F ++  +GL  + +    + D   K     +   L+  +  KGH+PDVV  + +I   +
Sbjct: 402 VFGQILKQGLEPSVLTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLS 461

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G   EALR F + +  G+  N Y +  LI G         K   D  K  + M    +
Sbjct: 462 RQGMMDEALRFFFQAVKRGLTLNNYLFNALIDGCF-----RLKRTRDGLKMYILMGMYKV 516

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            P+  TYT + +      ++DEA  L  Q+  KGF PD
Sbjct: 517 IPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPD 554



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 14/168 (8%)

Query: 70  DPRNLQEIFHKMRTEGL------TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVV 123
           DP    +IF  M++ G+       N  + MF    ++G     L+L  +I   G  PD+V
Sbjct: 570 DPATGLQIFKLMQSNGIFPDICIYNVLINMF---FREGCVENVLELLREIIKYGLEPDIV 626

Query: 124 AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQK 183
            +  +I  Y S     +A+++F  +      PNA T+ +LI   A   DG    + DA  
Sbjct: 627 TYNTMICGYCSLKIFSKAIKLFEVLKCGRTQPNAITFTILID--AYCKDGR---MDDAML 681

Query: 184 YLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
               M+ +G  PN  TY+ + + + + +  + A  L ++M      P+
Sbjct: 682 IFSSMLERGPEPNILTYSCLIDGYFKTENTESAFELYEKMLGDRVSPN 729



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 12/159 (7%)

Query: 78  FHKMRTEGLTNNAVKMFDALSKDGL-----THEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           F +    GLT N   +F+AL  DG      T + L+++  +     +PDVV +T +++  
Sbjct: 473 FFQAVKRGLTLNNY-LFNALI-DGCFRLKRTRDGLKMYILMGMYKVIPDVVTYTVLVKGL 530

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           A  G+  EAL +F ++L  G +P+   Y  LI G     D    +     +    M   G
Sbjct: 531 AEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGL-----QIFKLMQSNG 585

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + P+   Y  +   F R   V+    LL+++   G  PD
Sbjct: 586 IFPDICIYNVLINMFFREGCVENVLELLREIIKYGLEPD 624



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/159 (23%), Positives = 74/159 (46%), Gaps = 10/159 (6%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F ++  +G + + +    + D   K       LQ+F  ++  G  PD+  +  +I  + 
Sbjct: 542 LFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFPDICIYNVLINMFF 601

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG- 192
             G  +  L +   ++  G+ P+  TY  +I G  +      KI   A K L E++  G 
Sbjct: 602 REGCVENVLELLREIIKYGLEPDIVTYNTMICGYCS-----LKIFSKAIK-LFEVLKCGR 655

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +PNA T+T + +A+ +  ++D+A  +   M  +G  P+
Sbjct: 656 TQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPN 694



 Score = 45.4 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +F++  K G   + L     + ++G +P +V    +++      Q   A   F  M+ SG
Sbjct: 211 VFNSFLKRGEVEKGLNFHRALVERGLVPKIVDCNKILKGLCMGNQIGVASDFFDMMVRSG 270

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            +PN  T++ LI             L +A      M+ KG+ P+   Y+ +     RA K
Sbjct: 271 PSPNLVTFSTLINVYCKELR-----LDEAFSLYNLMIEKGIVPDLVIYSILINGLFRAGK 325

Query: 213 VDEARGLLQQMKAKGFVPD 231
           ++E   L     A+G   D
Sbjct: 326 LEEGNSLFSMALARGVKMD 344



 Score = 45.1 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 21/170 (12%)

Query: 77  IFHKMRTEGLTNNAVKMFDALSKDGLT---HEALQLFAQIKDKGHMPDVV---------- 123
           + H     G+ + AV  F  +SK G++   + A ++   + D   + DV+          
Sbjct: 146 LLHCYCRNGMVDRAVDTFAWMSKMGVSISHYAASEMLDLLIDSDRI-DVILENYEEMCKG 204

Query: 124 --AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDA 181
              +  V  ++   G+ ++ L     ++  G+ P       ++KGL     GN   +G A
Sbjct: 205 LGVYEFVFNSFLKRGEVEKGLNFHRALVERGLVPKIVDCNKILKGLCM---GNQ--IGVA 259

Query: 182 QKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             +   MV  G  PN  T++ +   + +  ++DEA  L   M  KG VPD
Sbjct: 260 SDFFDMMVRSGPSPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVPD 309


>gi|255583247|ref|XP_002532388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527912|gb|EEF30000.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 676

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/139 (35%), Positives = 69/139 (49%), Gaps = 7/139 (5%)

Query: 94  FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGV 153
            D L K G   EA  LF  +K+KG   + V +TA+I+ Y  AG+  +A  +  RML    
Sbjct: 256 IDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDC 315

Query: 154 APNAYTYAVLIKGLAAAADGNAKILGDAQKYLME-MVGKGMRPNAGTYTAVFEAFVRAQK 212
            PN+ TY  LI GL         +L      LME M+ KG++    TYT +  A ++   
Sbjct: 316 LPNSSTYNALIDGLCKERKVQEALL------LMESMIQKGLKCTVPTYTILIVAMLKEGD 369

Query: 213 VDEARGLLQQMKAKGFVPD 231
            D A  +L QM + G+ PD
Sbjct: 370 FDYAHRILDQMVSSGYQPD 388



 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 80/167 (47%), Gaps = 8/167 (4%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F+ M  +G   N V    +   L + G   E + +F ++++    P V  +T ++ A  
Sbjct: 26  VFNMMPKKGCRRNEVSYTNLIHGLCEVGRVDEGINIFKKMREDDCYPTVRTYTVIVHALF 85

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            +G+  EA+ +F  M   G  PN +TY V+I  +          L + ++ L EMV KG+
Sbjct: 86  ESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMCKETK-----LEEGRRILDEMVEKGL 140

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
            P+  TY A+ + + +   V+ A+ +L  M +    P+E+   E + 
Sbjct: 141 VPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELIC 187



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 69/157 (43%), Gaps = 8/157 (5%)

Query: 77  IFHKMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           IF KMR +           +  AL + G   EA+ LF++++++G  P++  +T +I A  
Sbjct: 61  IFKKMREDDCYPTVRTYTVIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMC 120

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
              + +E  R+   M+  G+ P+  TY  LI G          ++  AQ+ L  M     
Sbjct: 121 KETKLEEGRRILDEMVEKGLVPSVPTYNALIDGYCKEG-----MVEAAQEILDLMHSNSC 175

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
            PN  TY  +   F R + V  A  LL +M      P
Sbjct: 176 NPNERTYNELICGFCRKKNVHRAMALLSKMLESRLTP 212



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 11/171 (6%)

Query: 75  QEIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           QEI   M +     N     ++     +    H A+ L +++ +    P VV + ++I  
Sbjct: 164 QEILDLMHSNSCNPNERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTYNSLIHG 223

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD-GNAKILGDAQKYLMEMVG 190
               G    A R+   M  +GV P+ +TY+V I  L        A +L ++ K       
Sbjct: 224 QCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLK------E 277

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           KG++ N   YTA+ + + +A K+D+A  LL +M  +  +P+  +   ALID
Sbjct: 278 KGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLPN-SSTYNALID 327



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 71/170 (41%), Gaps = 25/170 (14%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
           A    G   EA  + + + ++G MPD + +T VI+AY   G    A  V  RM  +G  P
Sbjct: 398 AFCTRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAYGGLGLLNPAFDVLKRMFDTGCDP 457

Query: 156 NAYTYAVLIKGL-----------AAAADGNAKI----LGDAQKYLM---------EMVGK 191
           + +TY+ LIK L            A  D    +    + D  K +          +M+  
Sbjct: 458 SHHTYSCLIKHLLKEELTKKYKNVALCDSIPNVFFADVADVWKMMKFETALELFEKMLEH 517

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           G  PN  TY  +     +  ++  A+ L   M  +G  P E A+  +L++
Sbjct: 518 GCSPNINTYAKLIIGLCKVGRLGVAQKLFDHMNERGVSPSE-AIYNSLLN 566



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 8/157 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +M TE    N+     + D L K+    EAL L   +  KG    V  +T +I A  
Sbjct: 306 LLDRMLTEDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAML 365

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G    A R+  +M++SG  P+ Y Y   I   A    GN K   +A+  +  M  +G+
Sbjct: 366 KEGDFDYAHRILDQMVSSGYQPDVYIYTAFIH--AFCTRGNIK---EAEDMMSMMFERGV 420

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
            P+A TYT V +A+     ++ A  +L++M   G  P
Sbjct: 421 MPDALTYTLVIDAYGGLGLLNPAFDVLKRMFDTGCDP 457



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 5/116 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
           A+ K+G    A ++  Q+   G+ PDV  +TA I A+ + G  KEA  +   M   GV P
Sbjct: 363 AMLKEGDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMP 422

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           +A TY ++I      A G   +L  A   L  M   G  P+  TY+ + +  ++ +
Sbjct: 423 DALTYTLVID-----AYGGLGLLNPAFDVLKRMFDTGCDPSHHTYSCLIKHLLKEE 473



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 72/172 (41%), Gaps = 13/172 (7%)

Query: 75  QEIFHKMRTEGL-----TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           + I  +M  +GL     T NA  + D   K+G+   A ++   +      P+   +  +I
Sbjct: 129 RRILDEMVEKGLVPSVPTYNA--LIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELI 186

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
             +        A+ +  +ML S + P+  TY  LI G           L  A + L  M 
Sbjct: 187 CGFCRKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIG-----YLDSAYRLLNLMN 241

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
             G+ P+  TY+   +   +  +++EA  L   +K KG   +E  +  ALID
Sbjct: 242 ENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANE-VIYTALID 292


>gi|356563451|ref|XP_003549976.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic-like [Glycine max]
          Length = 714

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 86/166 (51%), Gaps = 10/166 (6%)

Query: 74  LQEIFHKMRTEGLTNNAVKMFDALS---KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           ++E+ H+M   G+  + +     +S   K  L  +A+  F ++     MPD V ++A+++
Sbjct: 208 IEELAHQMIDNGVPLDNITYSTIISCAKKCNLYDKAVHWFERMYKTSLMPDEVTYSAILD 267

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM-EMV 189
            YA  G+ +E + ++ R  A+G  P+  T++VL K    A D       D  +Y+  EM 
Sbjct: 268 VYARLGKVEEVISLYERGRATGWKPDPITFSVLGKMFGEAGD------YDGIRYVFQEME 321

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAV 235
             G++PN   Y  + EA  +A K   ARGL ++M   G VP+EK +
Sbjct: 322 SVGVQPNLVVYNTLLEAMGKAGKPVFARGLFEEMIELGIVPNEKTL 367



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 87/193 (45%), Gaps = 21/193 (10%)

Query: 72  RNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHM-PDVVAHTA 127
           R+  E++ +M+  G   + +    + +  +  GL  EA  LF  +K   H  PD  ++TA
Sbjct: 381 RDALELWQRMKENGWPMDFILYNTLLNMCADVGLVEEAETLFRDMKQSAHCKPDSWSYTA 440

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           ++  Y S G   +A+++F  M  SGV  N   +  LI+ L     G A    D  +    
Sbjct: 441 MLNIYGSQGDVDKAMKLFNEMCKSGVELNVMGFTCLIQCL-----GRATEFDDLVRVFGI 495

Query: 188 MVGKGMRPN---AGTYTAVFEAFVRAQKVDEARGLLQQMKAK-----GFVPDEKAVKEAL 239
            V +G++P+    G   +V      +   ++    LQ+   K       + DEK+  E++
Sbjct: 496 SVERGIKPDDRLCGCLLSVVSLSQGSNDEEKVLACLQRANPKLVAFIHLIEDEKSSFESV 555

Query: 240 IDKRGQGFRGVIN 252
            ++    F+G+++
Sbjct: 556 KEE----FKGIMS 564



 Score = 44.3 bits (103), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 67/157 (42%), Gaps = 11/157 (7%)

Query: 92  KMF-DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           KMF +A   DG+ +    +F +++  G  P++V +  ++EA   AG+   A  +F  M+ 
Sbjct: 302 KMFGEAGDYDGIRY----VFQEMESVGVQPNLVVYNTLLEAMGKAGKPVFARGLFEEMIE 357

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
            G+ PN  T   +IK       G A+   DA +    M   G   +   Y  +       
Sbjct: 358 LGIVPNEKTLTAVIK-----IYGKARWSRDALELWQRMKENGWPMDFILYNTLLNMCADV 412

Query: 211 QKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRG-QG 246
             V+EA  L + MK       +     A+++  G QG
Sbjct: 413 GLVEEAETLFRDMKQSAHCKPDSWSYTAMLNIYGSQG 449


>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic [Vitis vinifera]
          Length = 772

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 52/165 (31%), Positives = 82/165 (49%), Gaps = 8/165 (4%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +EIF +M  +G++ N V    + D L K+    EA QL  Q+  +G  PD   + +++  
Sbjct: 511 EEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTY 570

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +  AG  K+A  +   M ++G  P++ TY  LI GL+ A  G  ++   A + L  +  K
Sbjct: 571 FCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKA--GRVEL---ASRLLRTVQLK 625

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK 236
           GM     TY  V +A  R ++  EA  L ++M  KG  PD    K
Sbjct: 626 GMVLAPQTYNPVIKALFREKRTSEAVRLFREMMEKGDPPDAVTYK 670



 Score = 73.6 bits (179), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 44/163 (26%), Positives = 82/163 (50%), Gaps = 8/163 (4%)

Query: 72  RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R   E+F +M+T+G   +      + D+L   G   EAL L  +++  G   +VV +  +
Sbjct: 438 RLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTL 497

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I+ +    + +EA  +F  M   G++ N  TY  LI GL        + + +A + + +M
Sbjct: 498 IDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLC-----KNRRVEEAAQLMDQM 552

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + +G++P+  TY ++   F RA  + +A  ++Q M + G  PD
Sbjct: 553 LMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPD 595



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/127 (31%), Positives = 68/127 (53%), Gaps = 5/127 (3%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A++LF ++K KG  PD   +  +I++  S G+ +EAL +   M +SG + N  TY  LI 
Sbjct: 440 AMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLID 499

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G         K + +A++   EM  +G+  N  TY  + +   + ++V+EA  L+ QM  
Sbjct: 500 GFC-----KNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLM 554

Query: 226 KGFVPDE 232
           +G  PD+
Sbjct: 555 EGLKPDK 561



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 5/133 (3%)

Query: 99  KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAY 158
           K+G   E L    ++ ++G  PD     +++      G  K AL +   ML  G  P+ +
Sbjct: 293 KEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIF 352

Query: 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218
           TY  LI GL    +     + +A + L +M+ +   PN  TY  +     +  +V+EA  
Sbjct: 353 TYNSLIFGLCKLGE-----VEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEATE 407

Query: 219 LLQQMKAKGFVPD 231
           L + + +KG +PD
Sbjct: 408 LARVLTSKGILPD 420



 Score = 64.3 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 40/155 (25%), Positives = 70/155 (45%), Gaps = 8/155 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           EI ++M     + N V    +   L K+    EA +L   +  KG +PDV    ++I+  
Sbjct: 372 EILNQMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGL 431

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
                 + A+ +F  M   G  P+ +TY +LI  L +        L +A   L EM   G
Sbjct: 432 CLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGR-----LEEALSLLKEMESSG 486

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
              N  TY  + + F + ++++EA  +  +M+ +G
Sbjct: 487 CSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQG 521



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/167 (26%), Positives = 74/167 (44%), Gaps = 8/167 (4%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D +   +I   M + G   ++V    +   LSK G    A +L   ++ KG +     + 
Sbjct: 576 DIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELASRLLRTVQLKGMVLAPQTYN 635

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
            VI+A     +  EA+R+F  M+  G  P+A TY V+ +GL +        +G+A  +L+
Sbjct: 636 PVIKALFREKRTSEAVRLFREMMEKGDPPDAVTYKVVFRGLCSGGGP----IGEAVDFLV 691

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ-MKAKGFVPDE 232
           EM  KG  P+  ++  + E        D    L+ + MK   F   E
Sbjct: 692 EMTDKGFLPDFSSFLMLAEGLCALSMEDTLIKLVNRVMKQANFSDSE 738



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 68/151 (45%), Gaps = 7/151 (4%)

Query: 82  RTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEA 141
           R +  T N+  + + L + G    AL++   +  +G  PD+  + ++I      G+ +EA
Sbjct: 313 RPDRFTFNS--LVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEA 370

Query: 142 LRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYT 201
           + +  +M+    +PN  TY  LI  L          + +A +    +  KG+ P+  T+ 
Sbjct: 371 VEILNQMILRDFSPNTVTYNTLISTLCKENQ-----VEEATELARVLTSKGILPDVCTFN 425

Query: 202 AVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           ++ +          A  L ++MK KG  PDE
Sbjct: 426 SLIQGLCLTNNHRLAMELFEEMKTKGCHPDE 456



 Score = 50.4 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 60/139 (43%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +  AL +      A+ +  ++   G  PD    T +++ +   G    ALR+  +M+A+G
Sbjct: 217 LIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGALRIREQMVAAG 276

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
              +  T  VL+ G           + +   ++ EM  +G RP+  T+ ++     R   
Sbjct: 277 CPSSNVTVNVLVHGYCKEGR-----IEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGH 331

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V  A  +L  M  +GF PD
Sbjct: 332 VKHALEILDVMLQEGFDPD 350



 Score = 44.3 bits (103), Expect = 0.048,   Method: Composition-based stats.
 Identities = 47/224 (20%), Positives = 97/224 (43%), Gaps = 15/224 (6%)

Query: 13  SPSPKRSL--RITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKKVVDEEPTD 70
           SPSP   L    T  ++   L+R     S      + + +    P    +++V+ +   D
Sbjct: 59  SPSPTTQLPQNFTPKQLRDALRRQSDEDSILDLLDWASKQPNFVPSSVIYEEVLRKLGKD 118

Query: 71  PR--NLQEIFHKMRTEGLT---NNAVKMFDALSKDGLTHEALQLFAQIKDK-GHMPDVVA 124
               +++ +  +M+  G        + + ++ +K  L  EA+ +   ++++ G   D   
Sbjct: 119 GSFGSMRRVLQEMKHTGCEIRRGTFLILIESYAKFELFDEAVAVVDIMEEEFGLKLDAFT 178

Query: 125 HTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKY 184
           +  ++       + K    V  RM++ G+ P+  T+ +LIK L  A      IL      
Sbjct: 179 YNFLLNVLVDGNKLKLVEIVNSRMVSRGIKPDVTTFNILIKALCRAHQIRPAIL------ 232

Query: 185 LMEMVGK-GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
           +ME +G  G+ P+  T+T + + F+    ++ A  + +QM A G
Sbjct: 233 MMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGALRIREQMVAAG 276


>gi|222623336|gb|EEE57468.1| hypothetical protein OsJ_07708 [Oryza sativa Japonica Group]
          Length = 335

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 88/174 (50%), Gaps = 24/174 (13%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY-- 132
           FH M   GL+ + +    + +   K G   EA QLF Q+ + G  PDV+A+T +++ +  
Sbjct: 147 FHDMVQRGLSIDVIVYTILMNGYCKAGRLQEACQLFVQMTNLGIKPDVIAYTVLLDGHLK 206

Query: 133 ASAGQGKEAL----RVFM------RMLAS----GVAPNAYTYAVLIKGLAAAADGNAKIL 178
            +  QG E +    R F+      ++L+S     + P+   Y VLI G        A+ L
Sbjct: 207 ETLQQGWEGIAKERRSFLLRANHNKLLSSMKDMQIEPDVPCYTVLIDGKC-----KAEYL 261

Query: 179 GDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
            +A++   EM+ KG+ P+A  YTA+   +    ++ +A  LLQ+M  KG  PDE
Sbjct: 262 VEARELFDEMLQKGLTPDAYAYTALINGYCSQGEISKAEDLLQEMIDKGIEPDE 315



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 12/161 (7%)

Query: 92  KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
           K+     ++G   +A   F  +  +G   DV+ +T ++  Y  AG+ +EA ++F++M   
Sbjct: 129 KLISIYCQNGDMDKAHLWFHDMVQRGLSIDVIVYTILMNGYCKAGRLQEACQLFVQMTNL 188

Query: 152 GVAPNAYTYAVLIKG-----LAAAADGNAK------ILGDAQKYLMEMVGKGMRPNAGTY 200
           G+ P+   Y VL+ G     L    +G AK      +  +  K L  M    + P+   Y
Sbjct: 189 GIKPDVIAYTVLLDGHLKETLQQGWEGIAKERRSFLLRANHNKLLSSMKDMQIEPDVPCY 248

Query: 201 TAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           T + +   +A+ + EAR L  +M  KG  PD  A   ALI+
Sbjct: 249 TVLIDGKCKAEYLVEARELFDEMLQKGLTPDAYAYT-ALIN 288



 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 57/106 (53%), Gaps = 5/106 (4%)

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
           +L + +KD    PDV  +T +I+    A    EA  +F  ML  G+ P+AY Y  LI G 
Sbjct: 231 KLLSSMKDMQIEPDVPCYTVLIDGKCKAEYLVEARELFDEMLQKGLTPDAYAYTALINGY 290

Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV 213
            +  +     +  A+  L EM+ KG+ P+  T++ + ++ +R++K+
Sbjct: 291 CSQGE-----ISKAEDLLQEMIDKGIEPDELTFSVLNQSSLRSRKI 331



 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
           EA +LF ++  KG  PD  A+TA+I  Y S G+  +A  +   M+  G+ P+  T++VL
Sbjct: 263 EARELFDEMLQKGLTPDAYAYTALINGYCSQGEISKAEDLLQEMIDKGIEPDELTFSVL 321


>gi|449491568|ref|XP_004158939.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 412

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 86/194 (44%), Gaps = 30/194 (15%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K G   EA ++F ++K +G +P+V+++++++  +  AG+ +E+ R+F  M+  G
Sbjct: 68  IIDGLCKVGHEDEAKEIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQG 127

Query: 153 VAPNAYTYAVLIKGLA----------------------------AAADGNAKI--LGDAQ 182
           V PN   + VLI  L                             +  DG  KI  L  A+
Sbjct: 128 VQPNLVQFNVLIDILCKEGKVIEAKKLLEVTIQRGIILDLVTYNSLIDGFCKIGDLSSAR 187

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDK 242
           K  + M  KG   N  +YT +   + +  KV+EA  L  +M   G  P+ K     L   
Sbjct: 188 KLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEMPQVGKRPNVKTYSTLLTGL 247

Query: 243 RGQGFRGVINILFG 256
              G  G  N LFG
Sbjct: 248 LQTGKVGDANKLFG 261



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +F++M  +G+  N V+   + D L K+G   EA +L      +G + D+V + ++I+ 
Sbjct: 117 KRLFNEMVDQGVQPNLVQFNVLIDILCKEGKVIEAKKLLEVTIQRGIILDLVTYNSLIDG 176

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +   G    A ++F+ M + G   N  +Y +LI G           + +A     EM   
Sbjct: 177 FCKIGDLSSARKLFLSMPSKGCEHNEISYTILINGYCKIWK-----VEEAMNLYNEMPQV 231

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G RPN  TY+ +    ++  KV +A  L   MKA G   D
Sbjct: 232 GKRPNVKTYSTLLTGLLQTGKVGDANKLFGVMKASGISVD 271



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 74/153 (48%), Gaps = 7/153 (4%)

Query: 75  QEIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            ++F  M+  G++ ++   V   D L K+G+  EA++LF ++K      D  +++ +I+ 
Sbjct: 257 NKLFGVMKASGISVDSCIYVIFLDGLCKNGVLFEAMELFNELKSYNFKLDFESYSRLIDG 316

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN-AKILGDAQKYLMEMVG 190
              AG+ + A   F ++   G+ PN  T  ++I G       + A IL +  + + E   
Sbjct: 317 LCKAGKVEIAWEFFKQLSQEGLQPNVVTCNIMIHGFCRVEQVDKANILFEKMEKMEE--- 373

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
            G  P+  TY  +   F  + K++E   LL +M
Sbjct: 374 NGCTPDIITYNTLLRGFCESNKLEEVVNLLHKM 406



 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/177 (20%), Positives = 82/177 (46%), Gaps = 13/177 (7%)

Query: 58  DPFKKVVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIK 114
           D F K+      D  + +++F  M ++G  +N +    + +   K     EA+ L+ ++ 
Sbjct: 175 DGFCKI-----GDLSSARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEMP 229

Query: 115 DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174
             G  P+V  ++ ++      G+  +A ++F  M ASG++ ++  Y + + GL       
Sbjct: 230 QVGKRPNVKTYSTLLTGLLQTGKVGDANKLFGVMKASGISVDSCIYVIFLDGLCKNG--- 286

Query: 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             +L +A +   E+     + +  +Y+ + +   +A KV+ A    +Q+  +G  P+
Sbjct: 287 --VLFEAMELFNELKSYNFKLDFESYSRLIDGLCKAGKVEIAWEFFKQLSQEGLQPN 341



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 12/127 (9%)

Query: 117 GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA-------- 168
           G  PD+     +     +  +  E L     +L  G  P+  TY  LIKGL         
Sbjct: 5   GLSPDLFTLNILANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGLCRVHRISVA 64

Query: 169 --AAADGNAKI--LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
                DG  K+    +A++   EM  +GM PN  +Y+++   F  A K++E++ L  +M 
Sbjct: 65  TCIIIDGLCKVGHEDEAKEIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMV 124

Query: 225 AKGFVPD 231
            +G  P+
Sbjct: 125 DQGVQPN 131


>gi|359484268|ref|XP_002278014.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Vitis vinifera]
          Length = 641

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 82/163 (50%), Gaps = 13/163 (7%)

Query: 76  EIFHKMRTEGLT------NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           E+F++MR  G +      N  +  F  +++    H+ L+      D    PDVV +T++I
Sbjct: 258 ELFNEMRGFGCSPDVITYNTLINGFCRVNEVDRGHDLLKELLSKNDLS--PDVVTYTSII 315

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
             Y   G+ ++A  +F  M++SG+ PNA+T+ +LI G     D     +  A+    EM+
Sbjct: 316 SGYCKLGKMEKASILFNNMISSGIKPNAFTFNILINGFGKVGD-----MVSAENMYEEML 370

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
             G  P+  T+T++ +   R  KV+ +  L  ++ A+   P+E
Sbjct: 371 LLGCPPDIITFTSLIDGHCRTGKVERSLKLWHELNARNLSPNE 413



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 79/159 (49%), Gaps = 8/159 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F+ M + G+  NA     + +   K G    A  ++ ++   G  PD++  T++I+ + 
Sbjct: 330 LFNNMISSGIKPNAFTFNILINGFGKVGDMVSAENMYEEMLLLGCPPDIITFTSLIDGHC 389

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G+ + +L+++  + A  ++PN YT+A+L   L          L +A+ +L ++  + +
Sbjct: 390 RTGKVERSLKLWHELNARNLSPNEYTFAILTNALCKENR-----LHEARGFLRDLKWRHI 444

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
                 Y  V + F +A  VDEA  +L +M+ K   PD+
Sbjct: 445 VAQPFMYNPVIDGFCKAGNVDEANVILAEMEEKRCKPDK 483



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 42/79 (53%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   K G   EA  + A++++K   PD + +T +I  +   G+  EA+ +F RML +G
Sbjct: 454 VIDGFCKAGNVDEANVILAEMEEKRCKPDKITYTILIIGHCMKGRLSEAISIFNRMLGTG 513

Query: 153 VAPNAYTYAVLIKGLAAAA 171
            AP++ T   LI  L  A 
Sbjct: 514 CAPDSITMTSLISCLLKAG 532



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 73/175 (41%), Gaps = 12/175 (6%)

Query: 53  LPPPYDPFKKVVDEEPTD---PRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEA 106
            PP    F  ++D         R+L+ ++H++    L+ N      + +AL K+   HEA
Sbjct: 374 CPPDIITFTSLIDGHCRTGKVERSLK-LWHELNARNLSPNEYTFAILTNALCKENRLHEA 432

Query: 107 LQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKG 166
                 +K +  +     +  VI+ +  AG   EA  +   M      P+  TY +LI G
Sbjct: 433 RGFLRDLKWRHIVAQPFMYNPVIDGFCKAGNVDEANVILAEMEEKRCKPDKITYTILIIG 492

Query: 167 LAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221
                      L +A      M+G G  P++ T T++    ++A   +EA  ++Q
Sbjct: 493 HCMKGR-----LSEAISIFNRMLGTGCAPDSITMTSLISCLLKAGMPNEAYRIMQ 542


>gi|356534139|ref|XP_003535615.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g60050-like [Glycine max]
          Length = 480

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 85/187 (45%), Gaps = 10/187 (5%)

Query: 50  KSKLPPPYDPFKKVVD-----EEPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTH 104
           ++   P +  F  ++      ++P    NL     +M  E    +   + D LS+ G   
Sbjct: 289 RNGFSPDFHTFNILLHVLGKGDKPLAALNLLNHMREMGIEPTVLHFTTLIDGLSRAGNLD 348

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
                F ++   G +PDVVA+T +I  Y  AG+ ++AL+++  M++    PN +TY  +I
Sbjct: 349 ACKYFFDEMIKNGCIPDVVAYTVMITGYVVAGEIEKALKMYQYMISREQVPNVFTYNSII 408

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           +GL  A         +A   L EM  KG  PN+  Y  +      A K  +A  +++QM 
Sbjct: 409 QGLCMAGK-----FDEACSMLKEMKTKGCSPNSFVYNTLASCLRNAGKTADAHEVIRQMT 463

Query: 225 AKGFVPD 231
            KG   D
Sbjct: 464 EKGKYAD 470


>gi|341606827|gb|AEK83516.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
          Length = 207

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 76/146 (52%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+G  +E   +F  +  KG  P+V  +T +I+ YA +G  ++A+R+  RM+  G  P
Sbjct: 23  GLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKP 82

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY+V++ GL      N ++  +A  Y       G+  N+  Y+++ +   +A ++DE
Sbjct: 83  DVVTYSVVVNGLCK----NGRV-EEALDYFQTCRFNGLAINSMFYSSLIDGLGKAGRIDE 137

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      ALID
Sbjct: 138 AERLFEEMSEKGCTRDSYCYN-ALID 162



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 72/134 (53%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ D+G  PDVV ++ V+      G+ +EAL  F     +G
Sbjct: 55  LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNG 114

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +A N+  Y+ LI GL     G A  + +A++   EM  KG   ++  Y A+ +A  +  K
Sbjct: 115 LAINSMFYSSLIDGL-----GKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGK 169

Query: 213 VDEARGLLQQMKAK 226
           V+EA  L ++M+ +
Sbjct: 170 VNEAMTLFKRMEEE 183



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 60/140 (42%), Gaps = 6/140 (4%)

Query: 109 LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
           L+ ++ +KG        + VI      G+  E   VF  M+  G  PN   Y VLI G A
Sbjct: 1   LYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYA 60

Query: 169 AAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
            +       + DA + L  M+ +G +P+  TY+ V     +  +V+EA    Q  +  G 
Sbjct: 61  KSGS-----VEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNGL 115

Query: 229 VPDEKAVKEALIDKRGQGFR 248
             +      +LID  G+  R
Sbjct: 116 AIN-SMFYSSLIDGLGKAGR 134


>gi|115444491|ref|NP_001046025.1| Os02g0170000 [Oryza sativa Japonica Group]
 gi|49388067|dbj|BAD25179.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113535556|dbj|BAF07939.1| Os02g0170000 [Oryza sativa Japonica Group]
          Length = 397

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 86/172 (50%), Gaps = 8/172 (4%)

Query: 71  PRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P +  ++F++M++ G   N      + +A +++GL  +A ++F +++  GH PDV A+ A
Sbjct: 98  PMSSMKVFNEMKSIGCKPNICTYTALVNAFAREGLCEKAEEVFEEMQQAGHEPDVYAYNA 157

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           ++EAY+ AG  + A  +F  M   G  P+  +Y +L+      A G A +  DA+    E
Sbjct: 158 LMEAYSRAGLPQGASEIFSLMQHMGCEPDRASYNILVD-----AYGRAGLHEDAEAVFEE 212

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
           +  +GM P   ++  +  A  R+        ++ Q+   G  PD  A+   L
Sbjct: 213 LKQRGMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNAML 264



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 77/175 (44%), Gaps = 15/175 (8%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +MR  G+  NA       D L K   T +A++++ ++K +    +    T +I  Y 
Sbjct: 34  VISEMREHGIPPNATVYNAYLDGLLKARCTEKAVEVYQRMKRERCRANTETFTLMINVYG 93

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            A Q   +++VF  M + G  PN  TY  L+   A        +   A++   EM   G 
Sbjct: 94  KAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAFA-----REGLCEKAEEVFEEMQQAGH 148

Query: 194 RPNAGTYTAVFEAFVRA---QKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
            P+   Y A+ EA+ RA   Q   E   L+Q M   G  PD +A    L+D  G+
Sbjct: 149 EPDVYAYNALMEAYSRAGLPQGASEIFSLMQHM---GCEPD-RASYNILVDAYGR 199



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 81/164 (49%), Gaps = 12/164 (7%)

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E++ +M+ E    N      M +   K      ++++F ++K  G  P++  +TA++ A+
Sbjct: 68  EVYQRMKRERCRANTETFTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAF 127

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA--DGNAKILGDAQKYLMEMVG 190
           A  G  ++A  VF  M  +G  P+ Y Y  L++  + A    G ++I       LM+ + 
Sbjct: 128 AREGLCEKAEEVFEEMQQAGHEPDVYAYNALMEAYSRAGLPQGASEIFS-----LMQHM- 181

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
            G  P+  +Y  + +A+ RA   ++A  + +++K +G  P  K+
Sbjct: 182 -GCEPDRASYNILVDAYGRAGLHEDAEAVFEELKQRGMSPTMKS 224



 Score = 45.4 bits (106), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 53/143 (37%), Gaps = 30/143 (20%)

Query: 119 MPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAA-------- 170
           +P    +  ++ AY +AG    A  V   M   G+ PNA  Y   + GL  A        
Sbjct: 9   VPTEDTYALLLRAYCNAGSLHRAEGVISEMREHGIPPNATVYNAYLDGLLKARCTEKAVE 68

Query: 171 ----------------------ADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFV 208
                                   G AK    + K   EM   G +PN  TYTA+  AF 
Sbjct: 69  VYQRMKRERCRANTETFTLMINVYGKAKQPMSSMKVFNEMKSIGCKPNICTYTALVNAFA 128

Query: 209 RAQKVDEARGLLQQMKAKGFVPD 231
           R    ++A  + ++M+  G  PD
Sbjct: 129 REGLCEKAEEVFEEMQQAGHEPD 151



 Score = 45.1 bits (105), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 75/160 (46%), Gaps = 9/160 (5%)

Query: 75  QEIFHKMRTEGLT---NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +F +++  G++    + + +  A ++ G      ++ AQ+   G  PD  A  A++ A
Sbjct: 207 EAVFEELKQRGMSPTMKSHMLLLAAHARSGNATRCEEVMAQLHKSGLTPDTFALNAMLNA 266

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           YA AG+  +  R+F  M   G A +  TY V +      A G A  +G  +     +  +
Sbjct: 267 YARAGRLDDMERLFAAMERRGDA-DVGTYNVAVN-----AYGRAGYVGRMEAAFAAVAAR 320

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G+  +  T+TA   A+ R ++     G++++M   G  PD
Sbjct: 321 GLAADVVTWTARMGAYARRKEYGRCVGMVEEMVDAGCYPD 360



 Score = 38.9 bits (89), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 5/79 (6%)

Query: 146 MRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFE 205
           M +L +   P   TYA+L++        NA  L  A+  + EM   G+ PNA  Y A  +
Sbjct: 1   MALLEAQCVPTEDTYALLLRAYC-----NAGSLHRAEGVISEMREHGIPPNATVYNAYLD 55

Query: 206 AFVRAQKVDEARGLLQQMK 224
             ++A+  ++A  + Q+MK
Sbjct: 56  GLLKARCTEKAVEVYQRMK 74


>gi|410109877|gb|AFV61018.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           lycioides]
          Length = 397

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 110/237 (46%), Gaps = 15/237 (6%)

Query: 2   AATAILRWLLHSPSPKRS-LRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPF 60
           +A+A+   +L +   +RS + + +  + A L+      + +  +  +  + K   P+D  
Sbjct: 36  SASAVFAAILETKGTQRSDIYVFSGLITAYLESGFLRDAXECYR--LTREHKFWVPFDTC 93

Query: 61  KKVVDEEPTDPRNLQEI--FHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIK 114
           +KV+ E     +  + +  F++   E     ++  F+ L     K+G    A  +F  I 
Sbjct: 94  RKVL-EHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKEGDIMVAQSVFNAIT 152

Query: 115 DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174
             G  P VV+   ++  Y   G   E  R+   M ASGV P+ YTY+VLI GL   +   
Sbjct: 153 KWGLRPSVVSFNTLMNGYIRLGDMDEGFRLKNAMHASGVQPDVYTYSVLINGLCKESK-- 210

Query: 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              + DA +   EM+ KG+ PN  T+T + +   +  +VD A  + +QM ++   PD
Sbjct: 211 ---MDDANEMFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLXPD 264



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 80/195 (41%), Gaps = 35/195 (17%)

Query: 63  VVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM 119
           +  E   D  N  E+F +M  +GL  N V    + D   K+G    A++++ Q+  +   
Sbjct: 205 LCKESKMDDAN--EMFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLX 262

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD------- 172
           PD++ +  +I      G  K+A  +   M   G+ P+  TY  LI G     D       
Sbjct: 263 PDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEH 322

Query: 173 ---------------GNAKILG--------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
                            A I G        DA+K L EM+  G++P+ GTYT +   F +
Sbjct: 323 RKRMIQEXIRLDDVAYTALISGLCQEERYLDAEKVLREMLSVGLKPDTGTYTMIINEFCK 382

Query: 210 AQKVDEARGLLQQMK 224
              V     LL++M+
Sbjct: 383 KGDVWTGSKLLKEMQ 397


>gi|226492629|ref|NP_001143148.1| uncharacterized protein LOC100275629 [Zea mays]
 gi|195615066|gb|ACG29363.1| hypothetical protein [Zea mays]
          Length = 478

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 70/139 (50%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L + G   EAL +F+++  K   P VV +T VI   A  G   +AL++F  M   G
Sbjct: 203 IIDGLCRRGRLAEALDMFSEMVGKCIAPTVVTYTTVIHWLAREGCFDDALKIFHEMGRRG 262

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V+PN  TY+ LI GL       +     A + L  MV +   PN  TY++V +   +   
Sbjct: 263 VSPNLVTYSSLIDGLCKGGRATS-----ALELLDRMVKEKKLPNTITYSSVIDGLCKEHM 317

Query: 213 VDEARGLLQQMKAKGFVPD 231
           + EA  +L +M+ +G  PD
Sbjct: 318 LSEAMEVLDRMRLQGRKPD 336



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 70/162 (43%), Gaps = 14/162 (8%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTH--EALQLFAQIKDKGHMPDVVAHTAVI 129
           + +   MR  G    A     +  A   D   H  +AL+LF  I      PDV ++  +I
Sbjct: 149 RSLLADMRAAGFAPTAATYNVLLKAHCSDAAAHIEDALRLFRNIPK----PDVCSYNTII 204

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
           +     G+  EAL +F  M+   +AP   TY  +I  LA           DA K   EM 
Sbjct: 205 DGLCRRGRLAEALDMFSEMVGKCIAPTVVTYTTVIHWLA-----REGCFDDALKIFHEMG 259

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +G+ PN  TY+++ +   +  +   A  LL +M  +  +P+
Sbjct: 260 RRGVSPNLVTYSSLIDGLCKGGRATSALELLDRMVKEKKLPN 301



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 65/129 (50%), Gaps = 8/129 (6%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +IFH+M   G++ N V    + D L K G    AL+L  ++  +  +P+ + +++VI+  
Sbjct: 253 KIFHEMGRRGVSPNLVTYSSLIDGLCKGGRATSALELLDRMVKEKKLPNTITYSSVIDGL 312

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
                  EA+ V  RM   G  P+A  +  LI GL  A  G A    +A  YL EMV  G
Sbjct: 313 CKEHMLSEAMEVLDRMRLQGRKPDAGLFGKLIVGLCDA--GRAV---EAANYLDEMVLAG 367

Query: 193 MRPNAGTYT 201
           + PN  T++
Sbjct: 368 IEPNRVTWS 376



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 70/155 (45%), Gaps = 21/155 (13%)

Query: 77  IFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           + H +  EG  ++A+K+F  + + G++                P++V ++++I+     G
Sbjct: 238 VIHWLAREGCFDDALKIFHEMGRRGVS----------------PNLVTYSSLIDGLCKGG 281

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196
           +   AL +  RM+     PN  TY+ +I GL         +L +A + L  M  +G +P+
Sbjct: 282 RATSALELLDRMVKEKKLPNTITYSSVIDGLC-----KEHMLSEAMEVLDRMRLQGRKPD 336

Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           AG +  +      A +  EA   L +M   G  P+
Sbjct: 337 AGLFGKLIVGLCDAGRAVEAANYLDEMVLAGIEPN 371



 Score = 43.5 bits (101), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 36/170 (21%), Positives = 77/170 (45%), Gaps = 7/170 (4%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+  +M  E    N +    + D L K+ +  EA+++  +++ +G  PD      +I   
Sbjct: 288 ELLDRMVKEKKLPNTITYSSVIDGLCKEHMLSEAMEVLDRMRLQGRKPDAGLFGKLIVGL 347

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAV--LIKGLAAAADGNAKILGDAQKYLMEMVG 190
             AG+  EA      M+ +G+ PN  T+++   I      A  +   LG A +       
Sbjct: 348 CDAGRAVEAANYLDEMVLAGIEPNRVTWSLHARINNTVLTALCDKGELGRAFQVYQSTRT 407

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
           + +  +  T+  + E+F +   +++A  ++  M ++  +P E+   +A+I
Sbjct: 408 RSISTDPTTFHLLVESFSK-NNIEKAARVVLDMLSERCIP-ERETWDAII 455


>gi|341606823|gb|AEK83514.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
          Length = 208

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 76/146 (52%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+G  +E   +F  +  KG  P+V  +T +I+ YA +G  ++A+R+  RM+  G  P
Sbjct: 23  GLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKP 82

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY+V++ GL      N ++  +A  Y       G+  N+  Y+++ +   +A ++DE
Sbjct: 83  DVVTYSVVVNGLCK----NGRV-EEALDYFQTCRFNGLAINSMFYSSLIDGLGKAGRIDE 137

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      ALID
Sbjct: 138 AERLFEEMSEKGCTRDSYCYN-ALID 162



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 72/134 (53%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ D+G  PDVV ++ V+      G+ +EAL  F     +G
Sbjct: 55  LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNG 114

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +A N+  Y+ LI GL     G A  + +A++   EM  KG   ++  Y A+ +A  +  K
Sbjct: 115 LAINSMFYSSLIDGL-----GKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGK 169

Query: 213 VDEARGLLQQMKAK 226
           V+EA  L ++M+ +
Sbjct: 170 VNEAMTLFKRMEEE 183



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 60/140 (42%), Gaps = 6/140 (4%)

Query: 109 LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
           L+ ++ +KG        + VI      G+  E   VF  M+  G  PN   Y VLI G A
Sbjct: 1   LYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYA 60

Query: 169 AAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
            +       + DA + L  M+ +G +P+  TY+ V     +  +V+EA    Q  +  G 
Sbjct: 61  KSGS-----VEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNGL 115

Query: 229 VPDEKAVKEALIDKRGQGFR 248
             +      +LID  G+  R
Sbjct: 116 AIN-SMFYSSLIDGLGKAGR 134


>gi|341606821|gb|AEK83513.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
          Length = 205

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 76/146 (52%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+G  +E   +F  +  KG  P+V  +T +I+ YA +G  ++A+R+  RM+  G  P
Sbjct: 23  GLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKP 82

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY+V++ GL      N ++  +A  Y       G+  N+  Y+++ +   +A ++DE
Sbjct: 83  DVVTYSVVVNGLCK----NGRV-EEALDYFQTCRFNGLAINSMFYSSLIDGLGKAGRIDE 137

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      ALID
Sbjct: 138 AERLFEEMSEKGCTRDSYCYN-ALID 162



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 72/134 (53%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ D+G  PDVV ++ V+      G+ +EAL  F     +G
Sbjct: 55  LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNG 114

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +A N+  Y+ LI GL     G A  + +A++   EM  KG   ++  Y A+ +A  +  K
Sbjct: 115 LAINSMFYSSLIDGL-----GKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGK 169

Query: 213 VDEARGLLQQMKAK 226
           V+EA  L ++M+ +
Sbjct: 170 VNEAMTLFKRMEEE 183



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 60/140 (42%), Gaps = 6/140 (4%)

Query: 109 LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
           L+ ++ +KG        + VI      G+  E   VF  M+  G  PN   Y VLI G A
Sbjct: 1   LYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYA 60

Query: 169 AAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
            +       + DA + L  M+ +G +P+  TY+ V     +  +V+EA    Q  +  G 
Sbjct: 61  KSGS-----VEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNGL 115

Query: 229 VPDEKAVKEALIDKRGQGFR 248
             +      +LID  G+  R
Sbjct: 116 AIN-SMFYSSLIDGLGKAGR 134


>gi|224098475|ref|XP_002334555.1| predicted protein [Populus trichocarpa]
 gi|222873072|gb|EEF10203.1| predicted protein [Populus trichocarpa]
          Length = 244

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 81/161 (50%), Gaps = 8/161 (4%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           ++++++M  +GLT + V    +   L + G   EA  LF  +   G++PD+ A++ +++ 
Sbjct: 49  KQLYNEMILQGLTPDKVTYNTLIHGLCQLGRLREAQDLFKNMHKNGNLPDLFAYSILLDG 108

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G   +A R+F  M +S + P+   Y +L+   A    GN K   DA++   E+  K
Sbjct: 109 LCKQGYLGKAFRLFRAMQSSSLKPDLVMYNILVD--AMCKSGNLK---DARELFSELFVK 163

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           G++PN   YT +     +   +DEA    + M+  G  PDE
Sbjct: 164 GLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDE 204



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 74/166 (44%), Gaps = 14/166 (8%)

Query: 72  RNLQEIFHKMRTEGLTNNAVKMF------DALSKDGLTHEALQLFAQIKDKGHMPDVVAH 125
           R  Q++F  M   G   N   +F      D L K G   +A +LF  ++     PD+V +
Sbjct: 81  REAQDLFKNMHKNG---NLPDLFAYSILLDGLCKQGYLGKAFRLFRAMQSSSLKPDLVMY 137

Query: 126 TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185
             +++A   +G  K+A  +F  +   G+ PN   Y  +I GL         +L +A +  
Sbjct: 138 NILVDAMCKSGNLKDARELFSELFVKGLQPNVQIYTTIINGLCKEG-----LLDEALEAF 192

Query: 186 MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             M   G  P+  +Y  +   F++ +    A  L+ +M+ +GF+ D
Sbjct: 193 RNMEEDGCPPDEFSYNVIIRGFLQHKDESRAVHLIGEMRDRGFIAD 238



 Score = 60.5 bits (145), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 75/184 (40%), Gaps = 38/184 (20%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA +LF  +  KG+ PDV  +  +I  Y  A +  +A +++  M+  G+ P+  TY  LI
Sbjct: 12  EARKLFDVMITKGYKPDVFCYNILINGYCKATRIDKAKQLYNEMILQGLTPDKVTYNTLI 71

Query: 165 KGLAAAA----------------------------DGNAK--ILGDAQKYLMEMVGKGMR 194
            GL                                DG  K   LG A +    M    ++
Sbjct: 72  HGLCQLGRLREAQDLFKNMHKNGNLPDLFAYSILLDGLCKQGYLGKAFRLFRAMQSSSLK 131

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA--------VKEALIDKRGQG 246
           P+   Y  + +A  ++  + +AR L  ++  KG  P+ +          KE L+D+  + 
Sbjct: 132 PDLVMYNILVDAMCKSGNLKDARELFSELFVKGLQPNVQIYTTIINGLCKEGLLDEALEA 191

Query: 247 FRGV 250
           FR +
Sbjct: 192 FRNM 195



 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 8/128 (6%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F  M++  L  + V    + DA+ K G   +A +LF+++  KG  P+V  +T +I    
Sbjct: 121 LFRAMQSSSLKPDLVMYNILVDAMCKSGNLKDARELFSELFVKGLQPNVQIYTTIINGLC 180

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G   EAL  F  M   G  P+ ++Y V+I+G     D +      A   + EM  +G 
Sbjct: 181 KEGLLDEALEAFRNMEEDGCPPDEFSYNVIIRGFLQHKDESR-----AVHLIGEMRDRGF 235

Query: 194 RPNAGTYT 201
             + GT T
Sbjct: 236 IADVGTTT 243



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 5/119 (4%)

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
            Y+   +  EA ++F  M+  G  P+ + Y +LI G   A       +  A++   EM+ 
Sbjct: 3   GYSLCMEVVEARKLFDVMITKGYKPDVFCYNILINGYCKATR-----IDKAKQLYNEMIL 57

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRG 249
           +G+ P+  TY  +     +  ++ EA+ L + M   G +PD  A    L     QG+ G
Sbjct: 58  QGLTPDKVTYNTLIHGLCQLGRLREAQDLFKNMHKNGNLPDLFAYSILLDGLCKQGYLG 116


>gi|356549954|ref|XP_003543355.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11900-like [Glycine max]
          Length = 366

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 81/159 (50%), Gaps = 6/159 (3%)

Query: 72  RNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           R L+EI  ++     ++   K+  A +K G   ++L +F  +K +G+  D+V +  V++ 
Sbjct: 161 RFLEEI-SEITCSSTSSFINKIIFAFAKCGQRDKSLVIFDHLKRQGYGLDLVTYNIVLDI 219

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G+  E L VF  +  +G  P+  +Y  LI GL  A   +   +     Y  EM  K
Sbjct: 220 LGRTGRVDEMLDVFASIKDTGFVPDTVSYNTLINGLRKAGRFDMCFV-----YFKEMTEK 274

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           G+ P+  TYTA+ E F R+  V+E+    ++MK KG +P
Sbjct: 275 GVEPDLLTYTAIIEIFGRSGNVEESLKCFREMKLKGVLP 313



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 65/142 (45%), Gaps = 12/142 (8%)

Query: 77  IFHKMRTEG-----LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           IF  ++ +G     +T N V   D L + G   E L +FA IKD G +PD V++  +I  
Sbjct: 197 IFDHLKRQGYGLDLVTYNIV--LDILGRTGRVDEMLDVFASIKDTGFVPDTVSYNTLING 254

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              AG+       F  M   GV P+  TY  +I+    +  GN +   ++ K   EM  K
Sbjct: 255 LRKAGRFDMCFVYFKEMTEKGVEPDLLTYTAIIEIFGRS--GNVE---ESLKCFREMKLK 309

Query: 192 GMRPNAGTYTAVFEAFVRAQKV 213
           G+ P+   Y ++     +  KV
Sbjct: 310 GVLPSIYIYRSLIHNLNKTGKV 331


>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
          Length = 826

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 8/155 (5%)

Query: 81  MRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ 137
           MR++G+   T     +   +   G   +A  L  +++ +G +P+VV +TA+I  Y   GQ
Sbjct: 657 MRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQ 716

Query: 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA 197
             + + V   M +  + PN  TY V+I G + + D     +  A K L EMVGKG+ P+ 
Sbjct: 717 MDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGD-----MKTAAKLLHEMVGKGIVPDT 771

Query: 198 GTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
            TY  +   F +  K++E   +   M  +G   DE
Sbjct: 772 VTYNVLTNGFCKEGKIEEGFKICDYMSQEGLPLDE 806



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 52/186 (27%), Positives = 87/186 (46%), Gaps = 36/186 (19%)

Query: 77  IFHKMRTEGLTNNAVKMF----DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +F  MR +G++ + V +F    +A  K G   +A+QLF  ++  G  P+VV +  +I   
Sbjct: 234 VFETMR-QGVSPD-VYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGL 291

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA------------------------ 168
              G   EA R   +M+  GV     TY+VLI GL                         
Sbjct: 292 CKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNE 351

Query: 169 ----AAADGNAKI--LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
                  DG  K+  LGDA +   +MV KG+ PN+ T  ++ + F +  ++++A  +L++
Sbjct: 352 VVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEE 411

Query: 223 MKAKGF 228
           M ++GF
Sbjct: 412 MLSRGF 417



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/173 (28%), Positives = 85/173 (49%), Gaps = 10/173 (5%)

Query: 72  RNLQEIFHKMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           RN   +F  +  +G+         +  +L K     ++  +F  ++ +G  PDV   +  
Sbjct: 194 RNAIGVFRFLANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETMR-QGVSPDVYLFSTA 252

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I A+   G+ ++A+++F  M   GV+PN  TY  LI GL     GN   L +A ++  +M
Sbjct: 253 INAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGL--CKHGN---LDEAFRFKEKM 307

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           V  G+     TY+ +    ++ +K +EA  +L++   KGF P+E  V   LID
Sbjct: 308 VKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNE-VVYNTLID 359



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 14/163 (8%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +++F ++ T+ L  N+V    +  A  ++G T EA +L   ++ KG  P    ++++I  
Sbjct: 616 EKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHG 675

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQK---YLMEM 188
             + G+ ++A  +   M   G+ PN   Y  LI G           LG   K    L EM
Sbjct: 676 MCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCK--------LGQMDKVVNVLQEM 727

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
               + PN  TYT + + + ++  +  A  LL +M  KG VPD
Sbjct: 728 SSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPD 770



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/162 (29%), Positives = 79/162 (48%), Gaps = 10/162 (6%)

Query: 72  RNLQE-IFHKMR-TEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           R L+E +   MR  +GL    V     L K+G   +A++L+ ++ +KG   ++V   A+I
Sbjct: 442 RFLREMLLRNMRPNDGLLTTLV---GGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALI 498

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
                 G  +EA+R+  +ML  G   +  TY  LI G     +G  +   +  K   EMV
Sbjct: 499 HGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISG--CCKEGKVE---EGFKLRGEMV 553

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +G+ P+  TY  +     R  K+DEA  L  + K++  VP+
Sbjct: 554 KQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPN 595



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 40/149 (26%), Positives = 69/149 (46%), Gaps = 6/149 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M D   K     E  +LF ++  +    + V +  +I AY   G   EA ++   M + G
Sbjct: 602 MIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKG 661

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P   TY+ LI G+      N   + DA+  + EM  +G+ PN   YTA+   + +  +
Sbjct: 662 IPPTTATYSSLIHGMC-----NIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQ 716

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALID 241
           +D+   +LQ+M +    P+ K     +ID
Sbjct: 717 MDKVVNVLQEMSSYDIHPN-KITYTVMID 744



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/174 (24%), Positives = 75/174 (43%), Gaps = 12/174 (6%)

Query: 73  NLQE---IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           N+QE   +  KM   G   + +    +     K+G   E  +L  ++  +G  PD   + 
Sbjct: 506 NMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYN 565

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
            +I      G+  EA+ ++    +  + PN YTY V+I G   A       + + +K   
Sbjct: 566 LLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADK-----IEEGEKLFT 620

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
           E++ + +  N+  Y  +  A+ R     EA  L   M++KG +P   A   +LI
Sbjct: 621 ELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKG-IPPTTATYSSLI 673



 Score = 53.9 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 8/148 (5%)

Query: 84  EGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140
           +G T N V    + D   K G   +AL++   +  KG  P+ V   ++I+ +   GQ ++
Sbjct: 345 KGFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQ 404

Query: 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTY 200
           A  +   ML+ G + N   +  +I  L      N++    A ++L EM+ + MRPN G  
Sbjct: 405 AECILEEMLSRGFSINPGAFTTIIHWLCM----NSR-FESALRFLREMLLRNMRPNDGLL 459

Query: 201 TAVFEAFVRAQKVDEARGLLQQMKAKGF 228
           T +     +  K  +A  L  ++  KGF
Sbjct: 460 TTLVGGLCKEGKHSDAVELWFRLLEKGF 487



 Score = 39.7 bits (91), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 34/74 (45%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M D  SK G    A +L  ++  KG +PD V +  +   +   G+ +E  ++   M   G
Sbjct: 742 MIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIEEGFKICDYMSQEG 801

Query: 153 VAPNAYTYAVLIKG 166
           +  +  TY  L+ G
Sbjct: 802 LPLDEITYTTLVHG 815


>gi|356529689|ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Glycine max]
          Length = 892

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 48/154 (31%), Positives = 80/154 (51%), Gaps = 8/154 (5%)

Query: 89  NAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVF 145
           NAV    +   L + G  HEAL+ +A++++ G  P V  +T ++ A   +G+  EAL +F
Sbjct: 254 NAVSYTNLIHGLCEAGKLHEALEFWARMREDGCFPTVRTYTVLVCALCESGRELEALSLF 313

Query: 146 MRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFE 205
             M   G  PN YTY VLI  L          + +A K L EMV KG+ P+   + A+  
Sbjct: 314 GEMRERGCEPNVYTYTVLIDYLCKEGR-----MDEALKMLNEMVEKGVAPSVVPFNALIG 368

Query: 206 AFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
           ++ +   +++A G+L  M++K   P+ +   E +
Sbjct: 369 SYCKRGMMEDAVGVLGLMESKKVCPNVRTYNELI 402



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 71/159 (44%), Gaps = 8/159 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +MR  G   N      + D L K+G   EAL++  ++ +KG  P VV   A+I +Y 
Sbjct: 312 LFGEMRERGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYC 371

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G  ++A+ V   M +  V PN  TY  LI G         K +  A   L +MV   +
Sbjct: 372 KRGMMEDAVGVLGLMESKKVCPNVRTYNELICGFC-----RGKSMDRAMALLNKMVESKL 426

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
            P+  TY  +         VD A  L + M   GF PD+
Sbjct: 427 SPDVVTYNTLIHGLCEVGVVDSASRLFRLMIRDGFSPDQ 465



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/174 (25%), Positives = 82/174 (47%), Gaps = 24/174 (13%)

Query: 77  IFHKMRTEGLTNNAVKMFDALSKDGLT-------------------HEALQLFAQIKDKG 117
           + H +   G+ ++A ++F  + +DG +                    EA Q+   +K+K 
Sbjct: 436 LIHGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKH 495

Query: 118 HMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKI 177
              +  A+TA+I+ Y  AG+ + A  +F RMLA    PN+ T+ V+I GL    +G  + 
Sbjct: 496 VKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGL--RKEGKVQ- 552

Query: 178 LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             DA   + +M    ++P   TY  + E  ++    D A  +L ++ + G+ P+
Sbjct: 553 --DAMLLVEDMAKFDVKPTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQPN 604



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 61/126 (48%), Gaps = 5/126 (3%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A+ L  ++ +    PDVV +  +I      G    A R+F  M+  G +P+ +T+   + 
Sbjct: 414 AMALLNKMVESKLSPDVVTYNTLIHGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNAFMV 473

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
            L          +G+A + L  +  K ++ N   YTA+ + + +A K++ A  L ++M A
Sbjct: 474 CLCRMGR-----VGEAHQILESLKEKHVKANEHAYTALIDGYCKAGKIEHAASLFKRMLA 528

Query: 226 KGFVPD 231
           +  +P+
Sbjct: 529 EECLPN 534



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 48/199 (24%), Positives = 77/199 (38%), Gaps = 29/199 (14%)

Query: 61  KKVVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKG 117
           ++V+ E   D  N  EI +++ + G   N V       A    G   EA ++  +IK++G
Sbjct: 578 EEVLKEYDFDRAN--EILNRLISSGYQPNVVTYTAFIKAYCSQGRLEEAEEMVIKIKNEG 635

Query: 118 HMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAA------- 170
            + D   +  +I AY   G    A  V  RM  +G  P+  TY++L+K L          
Sbjct: 636 VLLDSFIYNLLINAYGCMGLLDSAFGVLRRMFGTGCEPSYLTYSILMKHLVIEKHKKEGS 695

Query: 171 ----------------ADGNAKI-LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV 213
                            D  +KI  G       +M   G  PN  TY+ +     +  ++
Sbjct: 696 NPVGLDVSLTNISVDNTDIWSKIDFGITTVLFEKMAECGCVPNLNTYSKLINGLCKVGRL 755

Query: 214 DEARGLLQQMKAKGFVPDE 232
           + A  L   M+  G  P E
Sbjct: 756 NVAFSLYHHMREGGISPSE 774



 Score = 47.8 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 35/157 (22%), Positives = 69/157 (43%), Gaps = 8/157 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M  E    N++    M D L K+G   +A+ L   +      P +  +  ++E   
Sbjct: 522 LFKRMLAEECLPNSITFNVMIDGLRKEGKVQDAMLLVEDMAKFDVKPTLHTYNILVEEVL 581

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
                  A  +  R+++SG  PN  TY   IK   +        L +A++ ++++  +G+
Sbjct: 582 KEYDFDRANEILNRLISSGYQPNVVTYTAFIKAYCSQGR-----LEEAEEMVIKIKNEGV 636

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
             ++  Y  +  A+     +D A G+L++M   G  P
Sbjct: 637 LLDSFIYNLLINAYGCMGLLDSAFGVLRRMFGTGCEP 673


>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
          Length = 1244

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 41/127 (32%), Positives = 69/127 (54%), Gaps = 5/127 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +A+ L  ++ + G+ PD+VA+ A+I++     +  +A   F  +   G+ PN  TY  L+
Sbjct: 276 DAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALV 335

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            GL      N+    DA + L +M+ K + PN  TY+A+ +AFV+  KV EA+ L ++M 
Sbjct: 336 NGLC-----NSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMV 390

Query: 225 AKGFVPD 231
                PD
Sbjct: 391 RMSIDPD 397



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 71/139 (51%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D+L K    ++A   F +I+ KG  P+VV +TA++    ++ +  +A R+   M+   
Sbjct: 299 IIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKK 358

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN  TY+ L+         N K+L +A++   EMV   + P+  TY+++        +
Sbjct: 359 ITPNVITYSALLDAFVK----NGKVL-EAKELFEEMVRMSIDPDIVTYSSLINGLCLHDR 413

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +DEA  +   M +KG + D
Sbjct: 414 IDEANQMFDLMVSKGCLAD 432



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 46/193 (23%), Positives = 84/193 (43%), Gaps = 24/193 (12%)

Query: 76   EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
            E+F +M   GL  N V    +   L + G    A ++F ++   G  P+++ +  +++  
Sbjct: 1031 EVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGL 1090

Query: 133  ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               G+ ++A+ VF  +  S + P  YTY ++I+G+  A       + D       +  KG
Sbjct: 1091 CKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGK-----VEDGWDLFCNLSLKG 1145

Query: 193  MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP----------------DEKAVK 236
            ++P+   Y  +   F R    +EA  L ++MK  G +P                D +A  
Sbjct: 1146 VKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASA 1205

Query: 237  EALIDKRGQGFRG 249
            E + + R  GF G
Sbjct: 1206 ELIKEMRSCGFAG 1218



 Score = 70.1 bits (170), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 72/139 (51%), Gaps = 5/139 (3%)

Query: 93   MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
            + D L K     +AL LF +++ KG  P+VV ++++I    + G+  +A R+   M+   
Sbjct: 876  IIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERK 935

Query: 153  VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            + P+ +T++ LI             L +A+K   EMV + + P+  TY+++   F    +
Sbjct: 936  INPDVFTFSALIDAFVKEGK-----LVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDR 990

Query: 213  VDEARGLLQQMKAKGFVPD 231
            +DEA+ + + M +K   PD
Sbjct: 991  LDEAKQMFEFMVSKHCFPD 1009



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DA  K+G   EA +LF ++      PD+V ++++I       +  EA ++F  M++ G
Sbjct: 369 LLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKG 428

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
              +  +Y  LI G        AK + D  K   EM  +G+  N  TY  + + F +A  
Sbjct: 429 CLADVVSYNTLINGFC-----KAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGD 483

Query: 213 VDEARGLLQQMKAKGFVPD 231
           VD+A+    QM   G  PD
Sbjct: 484 VDKAQEFFSQMDFFGISPD 502



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 40/164 (24%), Positives = 74/164 (45%), Gaps = 8/164 (4%)

Query: 75   QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            QEIF +M ++G+  N +    + D L K+G   +A+ +F  ++     P +  +  +IE 
Sbjct: 1065 QEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEG 1124

Query: 132  YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               AG+ ++   +F  +   GV P+   Y  +I G             +A     EM   
Sbjct: 1125 MCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKE-----EADALFKEMKED 1179

Query: 192  GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAV 235
            G  PN+G Y  +  A +R    + +  L+++M++ GF  D   +
Sbjct: 1180 GTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTI 1223



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 5/126 (3%)

Query: 105  EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
            EA Q+F  +  K   PDVV +  +I+ +    + +E + VF  M   G+  N  TY +LI
Sbjct: 993  EAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILI 1052

Query: 165  KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            +GL  A D +      AQ+   EMV  G+ PN  TY  + +   +  K+++A  + + ++
Sbjct: 1053 QGLFQAGDCDM-----AQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQ 1107

Query: 225  AKGFVP 230
                 P
Sbjct: 1108 RSKMEP 1113



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 5/136 (3%)

Query: 95  DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           + L K G T  A  L  +++     P V+ +  +I+         +AL +F  M   G+ 
Sbjct: 843 NGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIR 902

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
           PN  TY+ LI  L      N     DA + L +M+ + + P+  T++A+ +AFV+  K+ 
Sbjct: 903 PNVVTYSSLISCLC-----NYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLV 957

Query: 215 EARGLLQQMKAKGFVP 230
           EA  L  +M  +   P
Sbjct: 958 EAEKLYDEMVKRSIDP 973



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/160 (25%), Positives = 69/160 (43%), Gaps = 12/160 (7%)

Query: 77  IFHKMRTEGLTNNAVKMFDALSKDGLTH-----EALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +  KM   G   N V +   L  +G  H     EA+ L  Q+   G+ P+ V    +I  
Sbjct: 752 VLGKMMKLGYEPNIVTLSSLL--NGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHG 809

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
                +  EA+ +  RM+A G  P+  TY V++ GL    D +      A   L +M   
Sbjct: 810 LFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDL-----AFNLLNKMEQG 864

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            + P    Y  + +   + + +D+A  L ++M+ KG  P+
Sbjct: 865 KLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPN 904



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 41/182 (22%), Positives = 84/182 (46%), Gaps = 10/182 (5%)

Query: 50  KSKLPPPYDPFKKVVDEEPTDPRNLQ--EIFHKMRTEGLTNNAV---KMFDALSKDGLTH 104
           K K+ P    +  ++D    + + L+  E+F +M    +  + V    + + L       
Sbjct: 356 KKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRID 415

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA Q+F  +  KG + DVV++  +I  +  A + ++ +++F  M   G+  N  TY  LI
Sbjct: 416 EANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLI 475

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           +G   A D     +  AQ++  +M   G+ P+  TY  +        ++++A  + + M+
Sbjct: 476 QGFFQAGD-----VDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQ 530

Query: 225 AK 226
            +
Sbjct: 531 KR 532



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 67/139 (48%), Gaps = 5/139 (3%)

Query: 93   MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
            + DA  K+G   EA +L+ ++  +   P +V ++++I  +    +  EA ++F  M++  
Sbjct: 946  LIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKH 1005

Query: 153  VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
              P+  TY  LIKG         K + +  +   EM  +G+  N  TY  + +   +A  
Sbjct: 1006 CFPDVVTYNTLIKGFC-----KYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGD 1060

Query: 213  VDEARGLLQQMKAKGFVPD 231
             D A+ + ++M + G  P+
Sbjct: 1061 CDMAQEIFKEMVSDGVPPN 1079



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 5/125 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           AL +  ++   G+ P++V  ++++  Y  + +  EA+ +  +M  +G  PN  T+  LI 
Sbjct: 749 ALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIH 808

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           GL      +     +A   +  MV KG +P+  TY  V     +    D A  LL +M+ 
Sbjct: 809 GLFLHNKAS-----EAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQ 863

Query: 226 KGFVP 230
               P
Sbjct: 864 GKLEP 868



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 67/141 (47%), Gaps = 9/141 (6%)

Query: 95  DALSKDGLTH----EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           + LS++GL+     +A+ LF ++      P ++  + ++ A A   +    + +  +M  
Sbjct: 664 EKLSRNGLSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQN 723

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
            G+  N YTY++LI      +      L  A   L +M+  G  PN  T +++   +  +
Sbjct: 724 LGIPHNHYTYSILINCFCRRSQ-----LPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHS 778

Query: 211 QKVDEARGLLQQMKAKGFVPD 231
           +++ EA  L+ QM   G+ P+
Sbjct: 779 KRISEAVALVDQMFVTGYQPN 799



 Score = 51.2 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/160 (21%), Positives = 70/160 (43%), Gaps = 8/160 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F +M   GL +N V    +     + G   +A + F+Q+   G  PD+  +  ++   
Sbjct: 454 KLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGL 513

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+ ++AL +F  M    +  +  TY  +I+G+          + +A      +  KG
Sbjct: 514 CDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGK-----VEEAWSLFCSLSLKG 568

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           ++P+  TYT +         + E   L  +MK +G + ++
Sbjct: 569 LKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKND 608



 Score = 43.9 bits (102), Expect = 0.062,   Method: Composition-based stats.
 Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 5/111 (4%)

Query: 121 DVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGD 180
           D+     VI  +    Q   AL +  +ML  G  P+  T   L+ G           + D
Sbjct: 222 DLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFC-----RRNRVSD 276

Query: 181 AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           A   + +MV  G +P+   Y A+ ++  + ++V++A    ++++ KG  P+
Sbjct: 277 AVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPN 327



 Score = 43.5 bits (101), Expect = 0.081,   Method: Composition-based stats.
 Identities = 31/135 (22%), Positives = 59/135 (43%), Gaps = 8/135 (5%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D    QE F +M   G++ +      +   L  +G   +AL +F  ++ +    D+V +T
Sbjct: 483 DVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYT 542

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
            VI      G+ +EA  +F  +   G+ P+  TY  ++ GL         +L + +    
Sbjct: 543 TVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKG-----LLHEVEALYT 597

Query: 187 EMVGKGMRPNAGTYT 201
           +M  +G+  N  T +
Sbjct: 598 KMKQEGLMKNDCTLS 612


>gi|242091782|ref|XP_002436381.1| hypothetical protein SORBIDRAFT_10g001520 [Sorghum bicolor]
 gi|241914604|gb|EER87748.1| hypothetical protein SORBIDRAFT_10g001520 [Sorghum bicolor]
          Length = 546

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/126 (35%), Positives = 69/126 (54%), Gaps = 5/126 (3%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           AL++  ++   G +PDVV +T V+ AY + G  + A ++F  ++ASG  P+A  Y VL+ 
Sbjct: 223 ALKVLDEMTGWGIVPDVVTYTTVLTAYCAKGDLEGAQQLFDDIVASGRRPDATMYTVLVD 282

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G           L DA + + EM   G++PN  TY+ V EA  +  K  EA  L ++M  
Sbjct: 283 GYCHRGK-----LQDAARIMDEMEAAGVKPNEVTYSVVIEACCKEGKSIEACDLTREMLG 337

Query: 226 KGFVPD 231
            G+VPD
Sbjct: 338 AGYVPD 343



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 73/164 (44%), Gaps = 8/164 (4%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++  +M   G+  + V    +  A    G    A QLF  I   G  PD   +T +++ Y
Sbjct: 225 KVLDEMTGWGIVPDVVTYTTVLTAYCAKGDLEGAQQLFDDIVASGRRPDATMYTVLVDGY 284

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+ ++A R+   M A+GV PN  TY+V+I+  A   +G +    D  +   EM+G G
Sbjct: 285 CHRGKLQDAARIMDEMEAAGVKPNEVTYSVVIE--ACCKEGKSIEACDLTR---EMLGAG 339

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK 236
             P+      V +   +  K  EA  + +QM  K   PD   V 
Sbjct: 340 YVPDTPLCAKVVDVLCQDGKAGEANEIWRQMVKKSVPPDNTVVS 383



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 73/156 (46%), Gaps = 7/156 (4%)

Query: 90  AVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRML 149
             K+ D L +DG   EA +++ Q+  K   PD    + +I      G  +EA R     L
Sbjct: 347 CAKVVDVLCQDGKAGEANEIWRQMVKKSVPPDNTVVSTLIYWLCKNGMVQEA-RGLFDEL 405

Query: 150 ASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
             G  P+  TY  LI GL    +     L +A +   +MV +   PNA TY A+ + F +
Sbjct: 406 ERGFVPSLLTYNSLIIGLCENGE-----LQEAGRVWDDMVERRYEPNAMTYEALIKGFCK 460

Query: 210 AQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
             K +E   L ++M AKG  P  K + +AL+D   +
Sbjct: 461 IGKSNEGYALFKEMVAKGCTP-SKFLYQALVDSLSE 495



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 78/171 (45%), Gaps = 11/171 (6%)

Query: 62  KVVDEEPTDPR--NLQEIFHKMRTEGLT-NNAV--KMFDALSKDGLTHEALQLFAQIKDK 116
           KVVD    D +     EI+ +M  + +  +N V   +   L K+G+  EA  LF ++ ++
Sbjct: 349 KVVDVLCQDGKAGEANEIWRQMVKKSVPPDNTVVSTLIYWLCKNGMVQEARGLFDEL-ER 407

Query: 117 GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK 176
           G +P ++ + ++I      G+ +EA RV+  M+     PNA TY  LIKG       N  
Sbjct: 408 GFVPSLLTYNSLIIGLCENGELQEAGRVWDDMVERRYEPNAMTYEALIKGFCKIGKSN-- 465

Query: 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
              +      EMV KG  P+   Y A+ ++       D    +++ +   G
Sbjct: 466 ---EGYALFKEMVAKGCTPSKFLYQALVDSLSEPSHDDTVWTIVEAVALSG 513



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 5/113 (4%)

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
           P++V+   +++     G    AL+V   M   G+ P+  TY  ++    A  D     L 
Sbjct: 202 PNLVSCNILLKGLVGMGDLDAALKVLDEMTGWGIVPDVVTYTTVLTAYCAKGD-----LE 256

Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
            AQ+   ++V  G RP+A  YT + + +    K+ +A  ++ +M+A G  P+E
Sbjct: 257 GAQQLFDDIVASGRRPDATMYTVLVDGYCHRGKLQDAARIMDEMEAAGVKPNE 309



 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 8/97 (8%)

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN  +  +L+KGL    D +A     A K L EM G G+ P+  TYT V  A+     
Sbjct: 200 ITPNLVSCNILLKGLVGMGDLDA-----ALKVLDEMTGWGIVPDVVTYTTVLTAYCAKGD 254

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRG 249
           ++ A+ L   + A G  PD   +   L+D  G   RG
Sbjct: 255 LEGAQQLFDDIVASGRRPD-ATMYTVLVD--GYCHRG 288


>gi|255660864|gb|ACU25601.1| pentatricopeptide repeat-containing protein [Verbena perennis]
          Length = 484

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 12/168 (7%)

Query: 78  FHKMRTEGL-----TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           F+KM +EG+     T N   M       G    A + F  +K +   PDVV +  +I  Y
Sbjct: 138 FNKMLSEGIEPTRHTFNV--MIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGY 195

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               + +EA + F+ M    + P   TY  LIKG  +        + DA + + EM G G
Sbjct: 196 YRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQ-----VDDALRLVEEMKGFG 250

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
           ++PNA TY+ +      A+K+ EAR +L++M  K   P + ++   LI
Sbjct: 251 IKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFLRLI 298



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 83/171 (48%), Gaps = 30/171 (17%)

Query: 91  VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           V M D+  K+G+  E++++F ++++ G    + ++ A+ +     G+   A R F +ML+
Sbjct: 84  VMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLS 143

Query: 151 SGVAPNAYTYAVLIKGLAAAA----------------------------DGNAKI--LGD 180
            G+ P  +T+ V+I G   +                             +G  ++  + +
Sbjct: 144 EGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEE 203

Query: 181 AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           A+KY +EM G+ + P   TYT + + +V   +VD+A  L+++MK  G  P+
Sbjct: 204 AEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPN 254



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 64/120 (53%), Gaps = 6/120 (5%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA + F ++K +   P VV +T +I+ Y S  Q  +ALR+   M   G+ PNA TY+ L+
Sbjct: 203 EAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLL 262

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQKVDEARGLLQQM 223
            GL      NA+ + +A+  L EM+ K + P +   +  +  +  ++  +D A  +L+ M
Sbjct: 263 PGLC-----NAEKMSEARVILKEMMDKYLAPTDNSIFLRLISSHCKSGNLDAAVDVLKAM 317


>gi|341606825|gb|AEK83515.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
          Length = 206

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 76/146 (52%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+G  +E   +F  +  KG  P+V  +T +I+ YA +G  ++A+R+  RM+  G  P
Sbjct: 22  GLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKP 81

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY+V++ GL      N ++  +A  Y       G+  N+  Y+++ +   +A ++DE
Sbjct: 82  DVVTYSVVVNGLCK----NGRV-EEALDYFQTCRFNGLAINSMFYSSLIDGLGKAGRIDE 136

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      ALID
Sbjct: 137 AERLFEEMSEKGCTRDSYCYN-ALID 161



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 72/134 (53%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ D+G  PDVV ++ V+      G+ +EAL  F     +G
Sbjct: 54  LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNG 113

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +A N+  Y+ LI GL     G A  + +A++   EM  KG   ++  Y A+ +A  +  K
Sbjct: 114 LAINSMFYSSLIDGL-----GKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGK 168

Query: 213 VDEARGLLQQMKAK 226
           V+EA  L ++M+ +
Sbjct: 169 VNEAMTLFKRMEEE 182



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 53/123 (43%), Gaps = 6/123 (4%)

Query: 126 TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185
           + VI      G+  E   VF  M+  G  PN   Y VLI G A +       + DA + L
Sbjct: 17  SLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGS-----VEDAIRLL 71

Query: 186 MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
             M+ +G +P+  TY+ V     +  +V+EA    Q  +  G   +      +LID  G+
Sbjct: 72  HRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNGLAIN-SMFYSSLIDGLGK 130

Query: 246 GFR 248
             R
Sbjct: 131 AGR 133


>gi|255660930|gb|ACU25634.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
          Length = 484

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 12/174 (6%)

Query: 78  FHKMRTEGL-----TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           F+KM  EG+     T N +     LS  G    A + F  +K +   PDV+ +  +I  Y
Sbjct: 138 FNKMVNEGIEPTRHTFNVLIWGFFLS--GKVETANRFFEDMKSREITPDVITYNTMINGY 195

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               + +EA + F+ M    + P   TY  LIKG A+        + DA + + EM G G
Sbjct: 196 NRVKKMEEAEKYFLEMKERKIDPTVVTYTTLIKGYASVDR-----VDDALRLVEEMKGLG 250

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
           ++PNA TY+ +      A+K+ EAR +L++M  K   P + ++   LI  + + 
Sbjct: 251 IKPNAITYSTLLPGLCNAEKMSEARSILKEMVDKYVAPTDNSIFMRLISSQCKA 304



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 90/180 (50%), Gaps = 13/180 (7%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F  M++  +T + +    M +  ++     EA + F ++K++   P VV +T +I+ YAS
Sbjct: 173 FEDMKSREITPDVITYNTMINGYNRVKKMEEAEKYFLEMKERKIDPTVVTYTTLIKGYAS 232

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
             +  +ALR+   M   G+ PNA TY+ L+ GL      NA+ + +A+  L EMV K + 
Sbjct: 233 VDRVDDALRLVEEMKGLGIKPNAITYSTLLPGLC-----NAEKMSEARSILKEMVDKYVA 287

Query: 195 P-NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID---KRGQGFRGV 250
           P +   +  +  +  +A  +D A  +L+ M  +  VP E      LI+   K GQ  + V
Sbjct: 288 PTDNSIFMRLISSQCKAGNLDAAADVLKAM-IRLSVPTEAGHYGVLIEYYCKAGQYDKAV 346



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/171 (22%), Positives = 77/171 (45%), Gaps = 30/171 (17%)

Query: 91  VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           V M D+  K G+  E+++LF ++++ G    + ++ A+ +  +  G+   + R F +M+ 
Sbjct: 84  VMMIDSYGKAGIVQESVKLFQKMEELGVERTIKSYDALFKVISRRGRYMMSKRYFNKMVN 143

Query: 151 SGVAPNAYTYAVLIKGLAAAAD------------------------------GNAKILGD 180
            G+ P  +T+ VLI G   +                                   K + +
Sbjct: 144 EGIEPTRHTFNVLIWGFFLSGKVETANRFFEDMKSREITPDVITYNTMINGYNRVKKMEE 203

Query: 181 AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           A+KY +EM  + + P   TYT + + +    +VD+A  L+++MK  G  P+
Sbjct: 204 AEKYFLEMKERKIDPTVVTYTTLIKGYASVDRVDDALRLVEEMKGLGIKPN 254


>gi|399107206|gb|AFP20367.1| At1g03560-like protein, partial [Capsella grandiflora]
          Length = 212

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 76/146 (52%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+G  +E   +F  +  KG  P+V  +T +I+ YA +G  ++A+R+  RM+  G  P
Sbjct: 28  GLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKP 87

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY+V++ GL      N ++  +A  Y       G+  N+  Y+++ +   +A ++DE
Sbjct: 88  DVVTYSVVVNGLCK----NGRV-EEALDYFQTCRFNGLAINSMFYSSLIDGLGKAGRIDE 142

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      ALID
Sbjct: 143 AERLFEEMSEKGCTRDSYCYN-ALID 167



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 72/134 (53%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ D+G  PDVV ++ V+      G+ +EAL  F     +G
Sbjct: 60  LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNG 119

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +A N+  Y+ LI GL     G A  + +A++   EM  KG   ++  Y A+ +A  +  K
Sbjct: 120 LAINSMFYSSLIDGL-----GKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGK 174

Query: 213 VDEARGLLQQMKAK 226
           VDEA  L ++M+ +
Sbjct: 175 VDEAMTLFKRMEEE 188



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 6/143 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
            + L+ ++ +KG        + VI      G+  E   VF  M+  G  PN   Y VLI 
Sbjct: 3   CVALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLID 62

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G A +       + DA + L  M+ +G +P+  TY+ V     +  +V+EA    Q  + 
Sbjct: 63  GYAKSGS-----VEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRF 117

Query: 226 KGFVPDEKAVKEALIDKRGQGFR 248
            G   +      +LID  G+  R
Sbjct: 118 NGLAIN-SMFYSSLIDGLGKAGR 139


>gi|356508608|ref|XP_003523047.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18900-like [Glycine max]
          Length = 879

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 81/162 (50%), Gaps = 8/162 (4%)

Query: 74  LQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           + ++  +M  +G   N V   ++  +  +     EAL +F Q+++ G  PD V +  +I+
Sbjct: 402 INKLLEQMVKDGCQPNVVTYNRLIHSYGRANYLREALNVFNQMQEMGCEPDRVTYCTLID 461

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
            +A AG    A+ ++ RM   G++P+ +TY+V+I  L  + +     L  A +   EMV 
Sbjct: 462 IHAKAGFLDVAMSMYERMQEVGLSPDTFTYSVMINCLGKSGN-----LSAAHRLFCEMVD 516

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           +G  PN  TY  +     +A+    A  L + M+  GF PD+
Sbjct: 517 QGCVPNIVTYNILIALQAKARNYQTALELYRDMQNAGFKPDK 558



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 81/177 (45%), Gaps = 9/177 (5%)

Query: 72  RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R    +F++M+  G   + V    + D  +K G    A+ ++ ++++ G  PD   ++ +
Sbjct: 435 REALNVFNQMQEMGCEPDRVTYCTLIDIHAKAGFLDVAMSMYERMQEVGLSPDTFTYSVM 494

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I     +G    A R+F  M+  G  PN  TY +LI     A    A+    A +   +M
Sbjct: 495 INCLGKSGNLSAAHRLFCEMVDQGCVPNIVTYNILI-----ALQAKARNYQTALELYRDM 549

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
              G +P+  TY+ V E       ++EA  +  +M+   +VPDE  V   L+D  G+
Sbjct: 550 QNAGFKPDKVTYSIVMEVLGHCGYLEEAEAVFFEMRQNHWVPDE-PVYGLLVDLWGK 605



 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 74/159 (46%), Gaps = 8/159 (5%)

Query: 75  QEIFHKMRTEGLTNNAV--KMFDALSKDGLTHE-ALQLFAQIKDKGHMPDVVAHTAVIEA 131
             +F +M  +G   N V   +  AL      ++ AL+L+  +++ G  PD V ++ V+E 
Sbjct: 508 HRLFCEMVDQGCVPNIVTYNILIALQAKARNYQTALELYRDMQNAGFKPDKVTYSIVMEV 567

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G  +EA  VF  M  +   P+   Y +L+     A  GN +    A ++   M+  
Sbjct: 568 LGHCGYLEEAEAVFFEMRQNHWVPDEPVYGLLVDLWGKA--GNVE---KAWEWYHTMLRA 622

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           G+ PN  T  ++  AF+R  ++ +A  LLQ M   G  P
Sbjct: 623 GLLPNVPTCNSLLSAFLRVHRLPDAYNLLQNMVTLGLNP 661



 Score = 45.8 bits (107), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           G   + +TY  ++  L     G A+  G   K L +MV  G +PN  TY  +  ++ RA 
Sbjct: 378 GFWHDGHTYTTMVGIL-----GRAREFGAINKLLEQMVKDGCQPNVVTYNRLIHSYGRAN 432

Query: 212 KVDEARGLLQQMKAKGFVPDEKAVKEALID 241
            + EA  +  QM+  G  PD +     LID
Sbjct: 433 YLREALNVFNQMQEMGCEPD-RVTYCTLID 461



 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 53/127 (41%), Gaps = 6/127 (4%)

Query: 106 ALQLFAQIKDK-GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           A+  F  +K + G   D   +T ++     A +     ++  +M+  G  PN  TY  LI
Sbjct: 366 AVGFFCWLKRQPGFWHDGHTYTTMVGILGRAREFGAINKLLEQMVKDGCQPNVVTYNRLI 425

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
                   G A  L +A     +M   G  P+  TY  + +   +A  +D A  + ++M+
Sbjct: 426 HSY-----GRANYLREALNVFNQMQEMGCEPDRVTYCTLIDIHAKAGFLDVAMSMYERMQ 480

Query: 225 AKGFVPD 231
             G  PD
Sbjct: 481 EVGLSPD 487


>gi|260766045|gb|ACX50053.1| AT1G03560-like protein [Capsella bursa-pastoris]
          Length = 187

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 76/146 (52%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+G  +E   +F  +  KG  P+V  +T +I+ YA +G  ++A+R+  RM+  G  P
Sbjct: 14  GLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKP 73

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY+V++ GL      N ++  +A  Y       G+  N+  Y+++ +   +A ++DE
Sbjct: 74  DVVTYSVVVNGLCK----NGRV-EEALDYFQTCRFNGLAINSMFYSSLIDGLGKAGRIDE 128

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      ALID
Sbjct: 129 AERLFEEMSEKGCTRDSYCYN-ALID 153



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 72/134 (53%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ D+G  PDVV ++ V+      G+ +EAL  F     +G
Sbjct: 46  LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNG 105

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +A N+  Y+ LI GL     G A  + +A++   EM  KG   ++  Y A+ +A  +  K
Sbjct: 106 LAINSMFYSSLIDGL-----GKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGK 160

Query: 213 VDEARGLLQQMKAK 226
           VDEA  L ++M+ +
Sbjct: 161 VDEAMTLFKRMEEE 174



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 53/123 (43%), Gaps = 6/123 (4%)

Query: 126 TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185
           + VI      G+  E   VF  M+  G  PN   Y VLI G A +       + DA + L
Sbjct: 9   SLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGS-----VEDAIRLL 63

Query: 186 MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
             M+ +G +P+  TY+ V     +  +V+EA    Q  +  G   +      +LID  G+
Sbjct: 64  HRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNGLAIN-SMFYSSLIDGLGK 122

Query: 246 GFR 248
             R
Sbjct: 123 AGR 125


>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900
 gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 598

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 79/159 (49%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++  +MR  G T + V    + + + K+G   EA++    +   G  P+V+ H  ++ + 
Sbjct: 260 KLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSM 319

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
            S G+  +A ++   ML  G +P+  T+ +LI  L         +LG A   L +M   G
Sbjct: 320 CSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKG-----LLGRAIDILEKMPQHG 374

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +PN+ +Y  +   F + +K+D A   L++M ++G  PD
Sbjct: 375 CQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPD 413



 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 81/162 (50%), Gaps = 8/162 (4%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E   +M + G   + V    M  AL KDG   +A+++  Q+  KG  P ++ +  VI+  
Sbjct: 400 EYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGL 459

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           A AG+  +A+++   M A  + P+  TY+ L+ GL+         + +A K+  E    G
Sbjct: 460 AKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGK-----VDEAIKFFHEFERMG 514

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
           +RPNA T+ ++     ++++ D A   L  M  +G  P+E +
Sbjct: 515 IRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETS 556



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 82/164 (50%), Gaps = 12/164 (7%)

Query: 76  EIFHKMRTEG-----LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           EI +++ ++G     +T N V   D L+K G T +A++L  +++ K   PD + +++++ 
Sbjct: 435 EILNQLSSKGCSPVLITYNTV--IDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVG 492

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
             +  G+  EA++ F      G+ PNA T+  ++ GL  +   +  I      +L+ M+ 
Sbjct: 493 GLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAI-----DFLVFMIN 547

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
           +G +PN  +YT + E         EA  LL ++  KG +    A
Sbjct: 548 RGCKPNETSYTILIEGLAYEGMAKEALELLNELCNKGLMKKSSA 591



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 68/139 (48%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +A  +D     A++L  +++D+G  PDVV +  ++      G+  EA++    M +SG
Sbjct: 245 LIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSG 304

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN  T+ ++++ + +          DA+K L +M+ KG  P+  T+  +     R   
Sbjct: 305 CQPNVITHNIILRSMCSTGR-----WMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGL 359

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +  A  +L++M   G  P+
Sbjct: 360 LGRAIDILEKMPQHGCQPN 378



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +I  KM   G   N++    +     K+     A++   ++  +G  PD+V +  ++ A 
Sbjct: 365 DILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTAL 424

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+ ++A+ +  ++ + G +P   TY  +I GLA A        G A K L EM  K 
Sbjct: 425 CKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGK-----TGKAIKLLDEMRAKD 479

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           ++P+  TY+++     R  KVDEA     + +  G  P+
Sbjct: 480 LKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPN 518



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 64/139 (46%), Gaps = 8/139 (5%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M     K G  + AL +  ++      PDVV +  ++ +   +G+ K+A+ V  RML   
Sbjct: 178 MISGYCKAGEINNALSVLDRMSVS---PDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRD 234

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  TY +LI+  A   D     +G A K L EM  +G  P+  TY  +     +  +
Sbjct: 235 CYPDVITYTILIE--ATCRDSG---VGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGR 289

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +DEA   L  M + G  P+
Sbjct: 290 LDEAIKFLNDMPSSGCQPN 308



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 5/138 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +  +L   G   +A+++  ++  +   PDV+ +T +IEA         A+++   M   G
Sbjct: 210 ILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRG 269

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  TY VL+ G+          L +A K+L +M   G +PN  T+  +  +     +
Sbjct: 270 CTPDVVTYNVLVNGICKEGR-----LDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGR 324

Query: 213 VDEARGLLQQMKAKGFVP 230
             +A  LL  M  KGF P
Sbjct: 325 WMDAEKLLADMLRKGFSP 342



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L + GL   A+ +  ++   G  P+ +++  ++  +    +   A+    RM++ G
Sbjct: 350 LINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRG 409

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  TY  ++  L    DG  +   DA + L ++  KG  P   TY  V +   +A K
Sbjct: 410 CYPDIVTYNTMLTAL--CKDGKVE---DAVEILNQLSSKGCSPVLITYNTVIDGLAKAGK 464

Query: 213 VDEARGLLQQMKAKGFVPD 231
             +A  LL +M+AK   PD
Sbjct: 465 TGKAIKLLDEMRAKDLKPD 483



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 71/172 (41%), Gaps = 30/172 (17%)

Query: 87  TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFM 146
           +NN ++    + + G   E  +    +   G++PD++  T +I  +   G+ ++A ++  
Sbjct: 105 SNNHLR---QMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILE 161

Query: 147 RMLASGVAPNAYTYAVLIKGLAAAADGNAKI---------------------------LG 179
            +  SG  P+  TY V+I G   A + N  +                           L 
Sbjct: 162 ILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVSPDVVTYNTILRSLCDSGKLK 221

Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            A + L  M+ +   P+  TYT + EA  R   V  A  LL +M+ +G  PD
Sbjct: 222 QAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPD 273


>gi|224069254|ref|XP_002302938.1| predicted protein [Populus trichocarpa]
 gi|222844664|gb|EEE82211.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 82/158 (51%), Gaps = 8/158 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           EI+ +M T+GL  + V    + D L K G   EA +   ++  +G +PD   +T +++  
Sbjct: 358 EIYQQMFTKGLKADLVLYNTLIDGLCKGGYFREARKFVGEMTKRGLIPDKFTYTTLLDGS 417

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G  + AL +   M+  G+  +   +  +I GL      + KI+ DA++ L EM+  G
Sbjct: 418 CKEGDLELALEMRKEMVKEGIQLDNVAFTAIISGLCR----DGKIV-DAERTLREMLRAG 472

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           ++P+ GTYT V + F +   V     LL++M++ G +P
Sbjct: 473 LKPDDGTYTMVMDGFCKKGDVKMGFKLLKEMQSDGHIP 510



 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 100/234 (42%), Gaps = 13/234 (5%)

Query: 15  SPKRSLRITNTRVNATLQRSLSSSSDQPTKKYV--NTKSKLPPPYDPFKKVVDEEPTD-- 70
           + K +L+I        L+R +  SS     ++      S  PP    F  +++    +  
Sbjct: 188 TKKHNLKIPFNGCKCLLERMIKMSSPMVALEFYLEILDSGYPPNVYTFNVLMNRLCKEGK 247

Query: 71  PRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
            ++ Q IF ++R  GL   AV    + +   K G   E  +L   +++    PDV  ++A
Sbjct: 248 VKDAQLIFDEIRKTGLQPTAVSFNTLINGYCKSGNLEEGFRLKMVMEEFRVFPDVFTYSA 307

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           +I+      Q ++A  +F  M   G+ PN  T+  LI G     +G   +   A +   +
Sbjct: 308 LIDGLCKECQLEDANHLFKEMCDRGLVPNDVTFTTLING--QCKNGRVDL---ALEIYQQ 362

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           M  KG++ +   Y  + +   +     EAR  + +M  +G +PD K     L+D
Sbjct: 363 MFTKGLKADLVLYNTLIDGLCKGGYFREARKFVGEMTKRGLIPD-KFTYTTLLD 415



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 68/157 (43%), Gaps = 15/157 (9%)

Query: 62  KVVDEEPTDPRNLQEIFHK-MRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMP 120
           K+VD E    R L+E+    ++ +  T   V   D   K G      +L  +++  GH+P
Sbjct: 457 KIVDAE----RTLREMLRAGLKPDDGTYTMV--MDGFCKKGDVKMGFKLLKEMQSDGHIP 510

Query: 121 DVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGD 180
            V+ +  ++      GQ K A  +   ML  GV P+  TY +L++G           LGD
Sbjct: 511 GVITYNVLMNGLCKQGQVKNADMLLNAMLNLGVVPDDITYNILLQGHCKHGK-----LGD 565

Query: 181 AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
            Q    EM   G+  +  +Y ++     +A K  + R
Sbjct: 566 FQNVKTEM---GLVSDYASYRSLLHELSKASKDRQKR 599



 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 72/167 (43%), Gaps = 11/167 (6%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+  +M  EG+  + V    +   L +DG   +A +   ++   G  PD   +T V++ +
Sbjct: 428 EMRKEMVKEGIQLDNVAFTAIISGLCRDGKIVDAERTLREMLRAGLKPDDGTYTMVMDGF 487

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G  K   ++   M + G  P   TY VL+ GL     G  K   +A   L  M+  G
Sbjct: 488 CKKGDVKMGFKLLKEMQSDGHIPGVITYNVLMNGL--CKQGQVK---NADMLLNAMLNLG 542

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
           + P+  TY  + +   +  K+ + + +  +M   G V D  + +  L
Sbjct: 543 VVPDDITYNILLQGHCKHGKLGDFQNVKTEM---GLVSDYASYRSLL 586


>gi|255660874|gb|ACU25606.1| pentatricopeptide repeat-containing protein [Verbena canescens]
          Length = 484

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 12/168 (7%)

Query: 78  FHKMRTEGL-----TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           F+KM +EG+     T N   M       G    A + F  +K +   PDVV +  +I  Y
Sbjct: 138 FNKMLSEGIEPTRHTFNV--MIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGY 195

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               + +EA + F+ M    + P   TY  LIKG  +        + DA + + EM G G
Sbjct: 196 YRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQ-----VDDALRLVEEMKGFG 250

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
           ++PNA TY+ +      A+K+ EAR +L++M  K   P + ++   LI
Sbjct: 251 IKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFLRLI 298



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 83/171 (48%), Gaps = 30/171 (17%)

Query: 91  VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           V M D+  K+G+  E++++F ++++ G    + ++ A+ +     G+   A R F +ML+
Sbjct: 84  VMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLS 143

Query: 151 SGVAPNAYTYAVLIKGLAAAA----------------------------DGNAKI--LGD 180
            G+ P  +T+ V+I G   +                             +G  ++  + +
Sbjct: 144 EGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEE 203

Query: 181 AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           A+KY +EM G+ + P   TYT + + +V   +VD+A  L+++MK  G  P+
Sbjct: 204 AEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPN 254



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 64/120 (53%), Gaps = 6/120 (5%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA + F ++K +   P VV +T +I+ Y S  Q  +ALR+   M   G+ PNA TY+ L+
Sbjct: 203 EAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPNAITYSTLL 262

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQKVDEARGLLQQM 223
            GL      NA+ + +A+  L EM+ K + P +   +  +  +  ++  +D A  +L+ M
Sbjct: 263 PGLC-----NAEKMSEARVILKEMMDKYLAPTDNSIFLRLISSHCKSGNLDAAADVLKAM 317


>gi|297739653|emb|CBI29835.3| unnamed protein product [Vitis vinifera]
          Length = 852

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 85/170 (50%), Gaps = 8/170 (4%)

Query: 73  NLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           N Q  F+ M  EGL  N V    +  A +  G+  EA  +F +IK  G  PDVV++T+++
Sbjct: 357 NCQTAFNTMLAEGLKPNIVSYNALIGAYASHGMDKEAFSVFNEIKKNGFHPDVVSYTSLL 416

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
            AY  +G+ ++A++VF  M  +   PN  +Y  LI      A G+  +L +A + L EM 
Sbjct: 417 NAYGKSGKPEKAMKVFELMRRNHCKPNLVSYNALID-----AYGSKGLLTEAVEILHEME 471

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
             G++PN  +   +  A  R  +  + + +L   + +G   +  A   A+
Sbjct: 472 RNGVQPNIVSICTLLAACGRCGQKVKIKSVLSAAELRGIKLNTTAYNSAI 521



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 73/151 (48%), Gaps = 8/151 (5%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGH--MPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGV 153
            L K G   +A+ +F  +K+K     PDVV  T +I  Y+  GQ +     F  MLA G+
Sbjct: 311 CLVKLGQNGKAIDIFNSMKEKRSECYPDVVTFTTIIHLYSVCGQIENCQTAFNTMLAEGL 370

Query: 154 APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV 213
            PN  +Y  LI   A A+ G  K   +A     E+   G  P+  +YT++  A+ ++ K 
Sbjct: 371 KPNIVSYNALIG--AYASHGMDK---EAFSVFNEIKKNGFHPDVVSYTSLLNAYGKSGKP 425

Query: 214 DEARGLLQQMKAKGFVPDEKAVKEALIDKRG 244
           ++A  + + M+     P+  +   ALID  G
Sbjct: 426 EKAMKVFELMRRNHCKPNLVSY-NALIDAYG 455



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQL---FAQIKDKGHMPDVVAHTAVIEAY 132
           EI H+M   G+  N V +   L+  G   + +++    +  + +G   +  A+ + I +Y
Sbjct: 465 EILHEMERNGVQPNIVSICTLLAACGRCGQKVKIKSVLSAAELRGIKLNTTAYNSAIGSY 524

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
            S G+  +AL ++  M    V P+  TY VLI G    +       G+A  +L EM+   
Sbjct: 525 LSVGEYDKALSLYRAMRTKKVKPDPVTYNVLISGCCKMSK-----YGEALGFLDEMMDLK 579

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +  +   Y++V  A+ +  +V EA  +  +MK  G  PD
Sbjct: 580 IPLSKEVYSSVICAYSKQGQVTEAESMFTKMKMVGCRPD 618



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 5/134 (3%)

Query: 98  SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA 157
           ++  +  +A  LF +++     PD   + A+I A+  AGQ + A+ +   ML + + P+ 
Sbjct: 173 ARHNIVDQARGLFFEMQKWRCKPDAETYNALINAHGRAGQWRWAMNIMDDMLRAAIPPSR 232

Query: 158 YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
            TY  LI   A  + GN K   +A     +M   G+ P+  T+  V  A+ R  +  +  
Sbjct: 233 STYNNLIN--ACGSSGNWK---EALNVCKKMTENGVGPDLVTHNIVLSAYKRGNQYSKVL 287

Query: 218 GLLQQMKAKGFVPD 231
              + MK     PD
Sbjct: 288 SYFELMKGTNIRPD 301



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/171 (21%), Positives = 63/171 (36%), Gaps = 32/171 (18%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +A    G   EAL +  ++ + G  PD+V H  V+ AY    Q  + L  F  M  + 
Sbjct: 238 LINACGSSGNWKEALNVCKKMTENGVGPDLVTHNIVLSAYKRGNQYSKVLSYFELMKGTN 297

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKI--------------------------------LGD 180
           + P+  T  ++I  L         I                                + +
Sbjct: 298 IRPDTTTLNIVIYCLVKLGQNGKAIDIFNSMKEKRSECYPDVVTFTTIIHLYSVCGQIEN 357

Query: 181 AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            Q     M+ +G++PN  +Y A+  A+       EA  +  ++K  GF PD
Sbjct: 358 CQTAFNTMLAEGLKPNIVSYNALIGAYASHGMDKEAFSVFNEIKKNGFHPD 408



 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 71/148 (47%), Gaps = 15/148 (10%)

Query: 81  MRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVA---HTAVIEAYASAGQ 137
           MR + +  N    F+ +S   L  E  ++   IK       VV+      ++     +G+
Sbjct: 680 MREKKIPFNNSSFFEMVSACSLLREWREIIGLIKLMEPSISVVSIGLLNQLLHFLGKSGK 739

Query: 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKY---LMEMVGKGMR 194
            +  +++F +++ASG   N YTY++L+K L AA        G+ +KY   L  M   G++
Sbjct: 740 IETMMKLFYKIVASGAEINFYTYSILLKNLLAA--------GNWRKYIEVLQWMEEAGLQ 791

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
           P+ G Y ++  +F + +   E   ++Q+
Sbjct: 792 PSVGMYRSI-SSFAQNRSGAEYAAVIQE 818



 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 39/72 (54%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
           A SK G   EA  +F ++K  G  PDV+ +TA+I AY  A   ++A  +F+ M    V P
Sbjct: 593 AYSKQGQVTEAESMFTKMKMVGCRPDVITYTAMIHAYDVAENWEKASALFLEMETDDVQP 652

Query: 156 NAYTYAVLIKGL 167
           ++   + L++  
Sbjct: 653 DSIACSSLMRAF 664


>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
          Length = 553

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 85/169 (50%), Gaps = 12/169 (7%)

Query: 76  EIFHKMRTEG-----LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           EI +++ ++G     +T N V   D LSK G T  A++L  +++ KG  PD++ +++++ 
Sbjct: 390 EILNQLSSKGCSPVLITYNTV--IDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVS 447

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
             +  G+  EA++ F  +   G+ PNA TY  ++ GL  +   +  I      +L  M+ 
Sbjct: 448 GLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAI-----DFLAYMIS 502

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
           K  +P   TYT + E         EA  LL ++ ++G V    A + A+
Sbjct: 503 KRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGLVKKSSAEQVAV 551



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 72/140 (51%), Gaps = 5/140 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +  AL KDG    A+++  Q+  KG  P ++ +  VI+  +  G+ + A+++   M   G
Sbjct: 375 LLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKG 434

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+  TY+ L+ GL+         + +A K+  ++ G G+RPNA TY ++     ++++
Sbjct: 435 LKPDIITYSSLVSGLSREGK-----VDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQ 489

Query: 213 VDEARGLLQQMKAKGFVPDE 232
            D A   L  M +K   P E
Sbjct: 490 TDRAIDFLAYMISKRCKPTE 509



 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 76/159 (47%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++  +MR +G   + V    + + + K+G   EA++    +   G  P+V+ H  ++ + 
Sbjct: 215 KLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSM 274

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
            S G+  +A ++   ML  G +P+  T+ +LI  L         +LG A   L +M   G
Sbjct: 275 CSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQG-----LLGRAIDILEKMPMHG 329

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             PN+ +Y  +   F + +K+D A   L  M ++G  PD
Sbjct: 330 CTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPD 368



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 68/139 (48%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +A  K+    +A++L  ++++KG  PDVV +  +I      G+  EA++    M + G
Sbjct: 200 LIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYG 259

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN  T+ ++++ + +          DA+K L +M+ KG  P+  T+  +     R   
Sbjct: 260 CQPNVITHNIILRSMCSTGR-----WMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGL 314

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +  A  +L++M   G  P+
Sbjct: 315 LGRAIDILEKMPMHGCTPN 333



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 71/159 (44%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +I  KM   G T N++    +     K+     A++    +  +G  PD+V +  ++ A 
Sbjct: 320 DILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTAL 379

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+   A+ +  ++ + G +P   TY  +I GL+        I     K L EM  KG
Sbjct: 380 CKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAI-----KLLDEMRRKG 434

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           ++P+  TY+++     R  KVDEA      ++  G  P+
Sbjct: 435 LKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPN 473



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 5/138 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L   G   +A+++  +   K   PDV+ +T +IEA        +A+++   M   G
Sbjct: 165 ILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKG 224

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  TY VLI G+          L +A K+L  M   G +PN  T+  +  +     +
Sbjct: 225 SKPDVVTYNVLINGICKEGR-----LDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGR 279

Query: 213 VDEARGLLQQMKAKGFVP 230
             +A  LL  M  KG  P
Sbjct: 280 WMDAEKLLSDMLRKGCSP 297



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 73/162 (45%), Gaps = 27/162 (16%)

Query: 97  LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
           L ++G   +  +    +  +G +PD++  T++I  +   G+ K+A  V   +  SG  P+
Sbjct: 67  LVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPD 126

Query: 157 AYTYAVLIKGLAAAAD-GNA--------------------KILGDAQKY--LMEMVGKGM 193
             TY VLI G   + +  NA                    + L D+ K    ME++ + +
Sbjct: 127 VITYNVLISGYCKSGEIDNALQVLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQL 186

Query: 194 R----PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +    P+  TYT + EA  +   V +A  LL +M+ KG  PD
Sbjct: 187 QKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPD 228


>gi|399107196|gb|AFP20362.1| At1g03560-like protein, partial [Capsella grandiflora]
          Length = 212

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 76/146 (52%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+G  +E   +F  +  KG  P+V  +T +I+ YA +G  ++A+R+  RM+  G  P
Sbjct: 28  GLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIBEGFKP 87

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY+V++ GL      N ++  +A  Y       G+  N+  Y+++ +   +A ++DE
Sbjct: 88  DVVTYSVVVNGLCK----NGRV-EEALDYFQTCRFNGLAINSMFYSSLIDGLGKAGRIDE 142

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      ALID
Sbjct: 143 AERLFEEMSEKGCTRDSYCYN-ALID 167



 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 72/134 (53%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ B+G  PDVV ++ V+      G+ +EAL  F     +G
Sbjct: 60  LIDGYAKSGSVEDAIRLLHRMIBEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNG 119

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +A N+  Y+ LI GL     G A  + +A++   EM  KG   ++  Y A+ +A  +  K
Sbjct: 120 LAINSMFYSSLIDGL-----GKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGK 174

Query: 213 VDEARGLLQQMKAK 226
           VDEA  L ++M+ +
Sbjct: 175 VDEAMTLFKRMEEE 188



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 6/143 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
            + L+ ++ +KG        + VI      G+  E   VF  M+  G  PN   Y VLI 
Sbjct: 3   CVALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLID 62

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G A +       + DA + L  M+ +G +P+  TY+ V     +  +V+EA    Q  + 
Sbjct: 63  GYAKSGS-----VEDAIRLLHRMIBEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRF 117

Query: 226 KGFVPDEKAVKEALIDKRGQGFR 248
            G   +      +LID  G+  R
Sbjct: 118 NGLAIN-SMFYSSLIDGLGKAGR 139


>gi|356528212|ref|XP_003532699.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37230-like [Glycine max]
          Length = 738

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 75/143 (52%), Gaps = 9/143 (6%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           MF +L  D     A++ +  +K +G +PDVV +  +I  Y    + +EA ++F+ M    
Sbjct: 237 MFLSLRLD----TAVRFYEDMKSRGILPDVVTYNTLINGYFRFKKVEEAEKLFVEMKGRD 292

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN  ++  ++KG  AA       + DA K   EM G G++PNA T++ +      A+K
Sbjct: 293 IVPNVISFTTMLKGYVAAGQ-----IDDALKVFEEMKGCGVKPNAVTFSTLLPGLCDAEK 347

Query: 213 VDEARGLLQQMKAKGFVPDEKAV 235
           + EAR +L +M  +   P + AV
Sbjct: 348 MAEARDVLGEMVERYIAPKDNAV 370



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 77/171 (45%), Gaps = 41/171 (23%)

Query: 103 THEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAV 162
             EA +LF ++K +  +P+V++ T +++ Y +AGQ  +AL+VF  M   GV PNA T++ 
Sbjct: 278 VEEAEKLFVEMKGRDIVPNVISFTTMLKGYVAAGQIDDALKVFEEMKGCGVKPNAVTFST 337

Query: 163 LIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP--------------------------- 195
           L+ GL      +A+ + +A+  L EMV + + P                           
Sbjct: 338 LLPGLC-----DAEKMAEARDVLGEMVERYIAPKDNAVFMKLMSCQCKAGDLDAAGDVLK 392

Query: 196 ---------NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKE 237
                     AG Y  + E F +A   D+A  LL +M  K  V  +K   E
Sbjct: 393 AMIRLSIPTEAGHYGVLIENFCKANLYDKAEKLLDKMIEKEIVLRQKNAYE 443



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 72/141 (51%), Gaps = 5/141 (3%)

Query: 91  VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           V + D+  + G+  E+++LF ++K+ G    V ++ A+ +     G+   A R +  ML 
Sbjct: 161 VSLIDSYGRAGIVQESVKLFKKMKELGVDRTVKSYDALFKVILRRGRYMMAKRYYNAMLN 220

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
             V P  +TY +L+ G+  +       L  A ++  +M  +G+ P+  TY  +   + R 
Sbjct: 221 ESVEPTRHTYNILLWGMFLSLR-----LDTAVRFYEDMKSRGILPDVVTYNTLINGYFRF 275

Query: 211 QKVDEARGLLQQMKAKGFVPD 231
           +KV+EA  L  +MK +  VP+
Sbjct: 276 KKVEEAEKLFVEMKGRDIVPN 296



 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 65/145 (44%), Gaps = 5/145 (3%)

Query: 98  SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA 157
           SK+G    A ++   +  +G   D  ++  +IE+Y   G+  +A      ML SG  P +
Sbjct: 496 SKEGNPDSAFEIIKIMGRRGVARDADSYRLLIESYLRKGEPADAKTALDGMLESGHLPES 555

Query: 158 YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
             Y  +++ L    DG  +    A + +  MV KG++ N    + V EA +    V+EA 
Sbjct: 556 SLYRSVMESLFD--DGRVQT---ASRVMKSMVEKGVKENMDLVSKVLEALLMRGHVEEAL 610

Query: 218 GLLQQMKAKGFVPDEKAVKEALIDK 242
           G +  +   G  PD   +   L +K
Sbjct: 611 GRIHLLMLNGCEPDFDHLLSVLCEK 635


>gi|255547572|ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545894|gb|EEF47397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 594

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 72/139 (51%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DAL K+G+  EAL +F ++      PD+V ++++I     +   KE+  +   ML+  
Sbjct: 320 LVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRN 379

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+  T+++ +            ++ +AQ  +  M+ +G+RPN  TY ++ + +    +
Sbjct: 380 IRPDVVTFSIWVDVFCKKG-----MVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQ 434

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +DEAR +   M  KG  PD
Sbjct: 435 MDEARKVFDIMVNKGCAPD 453



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 71/137 (51%), Gaps = 5/137 (3%)

Query: 95  DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           D   K G+  EA  +   + ++G  P+VV + ++++ Y    Q  EA +VF  M+  G A
Sbjct: 392 DVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCA 451

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
           P+  +Y +LIKG   +       + +A++   EM  KG+ PN+ T+T +     +A +  
Sbjct: 452 PDVLSYNILIKGYCKSER-----IDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRPY 506

Query: 215 EARGLLQQMKAKGFVPD 231
            A+ L ++M + G  PD
Sbjct: 507 AAKELFKKMGSHGCPPD 523



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 71/139 (51%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D+L K+ L +EA+ LF  ++  G  P VV + ++I    ++GQ K+A  +F  ML   
Sbjct: 250 IIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWN 309

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+  T+++L+  L         ++ +A     +M+   M P+  TY+++     ++  
Sbjct: 310 MKPDVVTFSILVDALCKEG-----VVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSL 364

Query: 213 VDEARGLLQQMKAKGFVPD 231
             E+  LL +M ++   PD
Sbjct: 365 WKESSTLLNEMLSRNIRPD 383



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 76/168 (45%), Gaps = 8/168 (4%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           Q I + M   GL  N V    + D         EA ++F  + +KG  PDV+++  +I+ 
Sbjct: 404 QSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKG 463

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y  + +  EA ++F  M   G+ PN+ T+  LI GL  A    A     A++   +M   
Sbjct: 464 YCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRPYA-----AKELFKKMGSH 518

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
           G  P+  TY+ +   F +   +DEA  L + +K     P+    K  L
Sbjct: 519 GCPPDLITYSTLLSGFCKHGHLDEALALFEALKKSQLKPNHVICKILL 566



 Score = 53.9 bits (128), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 5/127 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA QLF ++  KG  P+ + HT +I     AG+   A  +F +M + G  P+  TY+ L+
Sbjct: 472 EAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLL 531

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            G           L +A      +    ++PN      +     +A K+++A+ L   + 
Sbjct: 532 SGFCKHGH-----LDEALALFEALKKSQLKPNHVICKILLGGMCKAGKLEDAKELFSSLS 586

Query: 225 AKGFVPD 231
            +   PD
Sbjct: 587 IEELQPD 593



 Score = 53.9 bits (128), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/157 (20%), Positives = 67/157 (42%), Gaps = 8/157 (5%)

Query: 77  IFHKMRTEGLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           I+ KM   G++ +   +    + L    L      +  +I   G  P ++    +I    
Sbjct: 126 IYRKMEFFGVSCSVYTLTILINCLCHLHLVGLGFSVLGKIFKLGFKPSIITFNTLINGLC 185

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G+  EA+     +++ G  P  YT+ +++ GL      +A I+     ++ +MV    
Sbjct: 186 IEGRIVEAMEQLDYIMSRGYQPTVYTHTMIVNGLCKIGKTSAAIV-----WMKKMVELDC 240

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
            P   +Y+ + ++  + + V+EA  L   M++ G  P
Sbjct: 241 EPEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGISP 277



 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/139 (20%), Positives = 57/139 (41%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L  +G   EA++    I  +G+ P V  HT ++      G+   A+    +M+   
Sbjct: 180 LINGLCIEGRIVEAMEQLDYIMSRGYQPTVYTHTMIVNGLCKIGKTSAAIVWMKKMVELD 239

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P   +Y+++I  L        +++ +A      M   G+ P   TY ++      + +
Sbjct: 240 CEPEVVSYSIIIDSLC-----KNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQ 294

Query: 213 VDEARGLLQQMKAKGFVPD 231
             +A  L ++M      PD
Sbjct: 295 WKQASILFKEMLEWNMKPD 313



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 62/126 (49%), Gaps = 8/126 (6%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +++F +M  +GLT N++    +   L + G  + A +LF ++   G  PD++ ++ ++  
Sbjct: 474 KQLFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSG 533

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +   G   EAL +F  +  S + PN     +L+ G+  A       L DA++    +  +
Sbjct: 534 FCKHGHLDEALALFEALKKSQLKPNHVICKILLGGMCKAGK-----LEDAKELFSSLSIE 588

Query: 192 GMRPNA 197
            ++P+ 
Sbjct: 589 ELQPDV 594


>gi|302825350|ref|XP_002994298.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
 gi|300137829|gb|EFJ04642.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
          Length = 577

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/148 (35%), Positives = 72/148 (48%), Gaps = 12/148 (8%)

Query: 86  LTNNAVKMFDALSKDGLTHEALQLFAQIKDK-----GHMPDVVAHTAVIEAYASAGQGKE 140
           +T N V   + L K     E L+LF  ++ +     G  PDV++++ VI+A   A +  +
Sbjct: 69  ITYNTV--VNGLCKANRIDEGLELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDK 126

Query: 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTY 200
           A   F RM A G APN  TY+ LI GL          + +A   LM++ G+ M P A  Y
Sbjct: 127 AYEYFKRMRAVGCAPNVVTYSSLIDGLC-----KVDRVDEAYSLLMQLKGEDMVPRAMYY 181

Query: 201 TAVFEAFVRAQKVDEARGLLQQMKAKGF 228
            AV   F R  K  E   LL  MK KGF
Sbjct: 182 NAVVNGFKRQGKPSECLELLLHMKEKGF 209



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 73/142 (51%), Gaps = 7/142 (4%)

Query: 89  NAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRM 148
           NAV   +   + G   E L+L   +K+KG   +++   A++ A     + ++A + F R+
Sbjct: 182 NAV--VNGFKRQGKPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERL 239

Query: 149 LASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFV 208
           L SG  PN  TY V + GL  A       + +A + L+EMV   + P+  TY+++ + F 
Sbjct: 240 LKSGKKPNVVTYNVAVHGLCKAGK-----VDEAYRILLEMVESKVTPDVITYSSIIDGFC 294

Query: 209 RAQKVDEARGLLQQMKAKGFVP 230
           +A ++D+A  +  +M     +P
Sbjct: 295 KAGRMDKADDVFTRMMVHECIP 316



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 70/141 (49%), Gaps = 5/141 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +   K G   +A +L  ++K++G   DV+ H+ +I+     G+  EAL  F  M    
Sbjct: 5   VINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSM-GEE 63

Query: 153 VAPNAYTYAVLIKGLAAA--ADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
            +PN  TY  ++ GL  A   D   ++  D +K        G  P+  +Y+ V +A  +A
Sbjct: 64  CSPNVITYNTVVNGLCKANRIDEGLELFDDMEKRY--EASHGCEPDVISYSTVIDALCKA 121

Query: 211 QKVDEARGLLQQMKAKGFVPD 231
           Q+VD+A    ++M+A G  P+
Sbjct: 122 QRVDKAYEYFKRMRAVGCAPN 142



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 69/163 (42%), Gaps = 8/163 (4%)

Query: 71  PRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P    E+   M+ +G   N +    M  AL K+    +A Q F ++   G  P+VV +  
Sbjct: 194 PSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNV 253

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
            +     AG+  EA R+ + M+ S V P+  TY+ +I G   A       +  A      
Sbjct: 254 AVHGLCKAGKVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGR-----MDKADDVFTR 308

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           M+     P+  T+  +   F   +K  EA  + + M   GF+P
Sbjct: 309 MMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIP 351



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 79/175 (45%), Gaps = 31/175 (17%)

Query: 97  LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
           L K G   EA ++  ++ +    PDV+ ++++I+ +  AG+  +A  VF RM+     P+
Sbjct: 258 LCKAGKVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPH 317

Query: 157 AYTYAVLIKGLAAAADG-----------NAKILGDAQKY--LMEMVG------------- 190
             T+  L+ G +                NA  +   Q Y  LM+ V              
Sbjct: 318 PVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYH 377

Query: 191 ----KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
               K  +P+A TY  + +   RA++VDEA+  L  M+A   VP+  A+  AL++
Sbjct: 378 KMKRKKRQPDANTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPN-GAICHALVE 431



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 75/163 (46%), Gaps = 14/163 (8%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+  +M+  G+  + +    +   L + G   EAL+ F  + ++   P+V+ +  V+   
Sbjct: 20  ELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSMGEECS-PNVITYNTVVNGL 78

Query: 133 ASAGQGKEALRVFMRM-----LASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
             A +  E L +F  M      + G  P+  +Y+ +I  L       A+ +  A +Y   
Sbjct: 79  CKANRIDEGLELFDDMEKRYEASHGCEPDVISYSTVIDALC-----KAQRVDKAYEYFKR 133

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           M   G  PN  TY+++ +   +  +VDEA  LL Q+K +  VP
Sbjct: 134 MRAVGCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQLKGEDMVP 176



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/152 (24%), Positives = 63/152 (41%), Gaps = 14/152 (9%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D +        AL+++ ++K K   PD   +  +I+    A +  EA      M A  
Sbjct: 359 LMDCVCGADSVESALEIYHKMKRKKRQPDANTYAPLIQCLCRARRVDEAKEFLDVMEADN 418

Query: 153 VAPNAYTYAVLIKGLA--AAADGNAKILG------------DAQKYLMEMVGKGMRPNAG 198
           V PN      L++ L      D    +L             +A + + +MV KG+RP+  
Sbjct: 419 VVPNGAICHALVEVLCKQGEVDEACSVLDNVVEICKAGEPDEAVEVIEQMVLKGVRPDEA 478

Query: 199 TYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           TY AV  +     +VD A    ++M ++G  P
Sbjct: 479 TYVAVLRSLCGLDRVDSAIAEFEKMASRGCAP 510



 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/208 (21%), Positives = 85/208 (40%), Gaps = 29/208 (13%)

Query: 49  TKSKLPPPYDPFKKVVDEEPTDPR--NLQEIFHKMRTEGLTNNAVK---MFDALSKDGLT 103
            +SK+ P    +  ++D      R     ++F +M       + V    +    S+   +
Sbjct: 275 VESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKS 334

Query: 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
            EA ++   + + G +P +  +  +++    A   + AL ++ +M      P+A TYA L
Sbjct: 335 REAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDANTYAPL 394

Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL--- 220
           I+ L       A+ + +A+++L  M    + PN     A+ E   +  +VDEA  +L   
Sbjct: 395 IQCLC-----RARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNV 449

Query: 221 ----------------QQMKAKGFVPDE 232
                           +QM  KG  PDE
Sbjct: 450 VEICKAGEPDEAVEVIEQMVLKGVRPDE 477



 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 59/129 (45%), Gaps = 11/129 (8%)

Query: 74  LQEIFHKMRTEGLTNNAVKMFD---ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           L E+  K   +G  + A  + D    + K G   EA+++  Q+  KG  PD   + AV+ 
Sbjct: 429 LVEVLCK---QGEVDEACSVLDNVVEICKAGEPDEAVEVIEQMVLKGVRPDEATYVAVLR 485

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
           +     +   A+  F +M + G AP   TY +LI G A +AD    +  DA +    MV 
Sbjct: 486 SLCGLDRVDSAIAEFEKMASRGCAPGLVTYTLLI-GEACSAD----MADDAFRIFEAMVA 540

Query: 191 KGMRPNAGT 199
            G  P A T
Sbjct: 541 AGFTPQAQT 549



 Score = 44.3 bits (103), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 5/119 (4%)

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             AG+  EA+ V  +M+  GV P+  TY  +++ L      ++ I  + +K    M  +G
Sbjct: 453 CKAGEPDEAVEVIEQMVLKGVRPDEATYVAVLRSLCGLDRVDSAI-AEFEK----MASRG 507

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVI 251
             P   TYT +      A   D+A  + + M A GF P  + ++      R  G++ ++
Sbjct: 508 CAPGLVTYTLLIGEACSADMADDAFRIFEAMVAAGFTPQAQTMRTLSSCLRDAGYQDLL 566



 Score = 37.7 bits (86), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 3/101 (2%)

Query: 70  DPRNLQEIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           +P    E+  +M  +G+  +    V +  +L        A+  F ++  +G  P +V +T
Sbjct: 457 EPDEAVEVIEQMVLKGVRPDEATYVAVLRSLCGLDRVDSAIAEFEKMASRGCAPGLVTYT 516

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
            +I    SA    +A R+F  M+A+G  P A T   L   L
Sbjct: 517 LLIGEACSADMADDAFRIFEAMVAAGFTPQAQTMRTLSSCL 557


>gi|255539453|ref|XP_002510791.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549906|gb|EEF51393.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 475

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 5/135 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D LS+ G        F ++   G +PDVV +T +I  Y  AG+ ++A  +F  M+A G
Sbjct: 335 LIDGLSRAGNLDACNYFFDEMIKNGFVPDVVCYTVMITGYIVAGELEKAREIFDEMIARG 394

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN +TY  +I+GL  A         +A+  L EM  +G +PN   Y  +      A K
Sbjct: 395 QLPNVFTYNSMIRGLCMAGK-----FEEARCMLKEMGSRGCKPNFLVYNTLVNNLRNAGK 449

Query: 213 VDEARGLLQQMKAKG 227
           + EAR ++++M   G
Sbjct: 450 LSEAREVIKEMAENG 464



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 63/126 (50%), Gaps = 5/126 (3%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           AL+L   +K+ G  P ++  T +I+  + AG        F  M+ +G  P+   Y V+I 
Sbjct: 313 ALKLLNHMKEIGFDPSILHFTTLIDGLSRAGNLDACNYFFDEMIKNGFVPDVVCYTVMIT 372

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G   A +     L  A++   EM+ +G  PN  TY ++      A K +EAR +L++M +
Sbjct: 373 GYIVAGE-----LEKAREIFDEMIARGQLPNVFTYNSMIRGLCMAGKFEEARCMLKEMGS 427

Query: 226 KGFVPD 231
           +G  P+
Sbjct: 428 RGCKPN 433



 Score = 50.4 bits (119), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 5/120 (4%)

Query: 112 QIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA 171
           Q+  +G+ PD + +  ++ A    G+     R+   M  SG +P+ +TY +L+  L    
Sbjct: 249 QMLVEGYCPDTLTYNILMCAKYRLGKLHHFHRLLDEMGRSGFSPDFHTYNILLHVLGK-- 306

Query: 172 DGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            GN  I   A K L  M   G  P+   +T + +   RA  +D       +M   GFVPD
Sbjct: 307 -GNKPI--AALKLLNHMKEIGFDPSILHFTTLIDGLSRAGNLDACNYFFDEMIKNGFVPD 363


>gi|302142099|emb|CBI19302.3| unnamed protein product [Vitis vinifera]
          Length = 609

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 82/164 (50%), Gaps = 12/164 (7%)

Query: 76  EIFHKMRTEG-----LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           EI +++ ++G     +T N V   D LSK G T  A++L  +++ KG  PD++ +++++ 
Sbjct: 278 EILNQLSSKGCSPVLITYNTV--IDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVS 335

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
             +  G+  EA++ F  +   G+ PNA TY  ++ GL  +   +  I      +L  M+ 
Sbjct: 336 GLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAI-----DFLAYMIS 390

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
           K  +P   TYT + E         EA  LL ++ ++G V    A
Sbjct: 391 KRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGLVKKSSA 434



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 80/158 (50%), Gaps = 8/158 (5%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +  AL KDG    A+++  Q+  KG  P ++ +  VI+  +  G+ + A+++   M   G
Sbjct: 263 LLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKG 322

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+  TY+ L+ GL+         + +A K+  ++ G G+RPNA TY ++     ++++
Sbjct: 323 LKPDIITYSSLVSGLSREGK-----VDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQ 377

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGV 250
            D A   L  M +K   P E A    LI+  G  + G+
Sbjct: 378 TDRAIDFLAYMISKRCKPTE-ATYTILIE--GIAYEGL 412



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 76/159 (47%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++  +MR +G   + V    + + + K+G   EA++    +   G  P+V+ H  ++ + 
Sbjct: 103 KLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSM 162

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
            S G+  +A ++   ML  G +P+  T+ +LI  L         +LG A   L +M   G
Sbjct: 163 CSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQG-----LLGRAIDILEKMPMHG 217

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             PN+ +Y  +   F + +K+D A   L  M ++G  PD
Sbjct: 218 CTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPD 256



 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 82/187 (43%), Gaps = 10/187 (5%)

Query: 46  YVNTKSKLPPP-YDPFKKVVDEEPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTH 104
           ++  K+ LP P +  F  ++        N Q +F      G +           K+    
Sbjct: 44  HLQQKTPLPIPIFIIFALIISVVSICCINQQTLFPCFSLSGFSFYV----QTTCKESGVG 99

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +A++L  ++++KG  PDVV +  +I      G+  EA++    M + G  PN  T+ +++
Sbjct: 100 QAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIIL 159

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           + + +          DA+K L +M+ KG  P+  T+  +     R   +  A  +L++M 
Sbjct: 160 RSMCSTGR-----WMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMP 214

Query: 225 AKGFVPD 231
             G  P+
Sbjct: 215 MHGCTPN 221



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 71/159 (44%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +I  KM   G T N++    +     K+     A++    +  +G  PD+V +  ++ A 
Sbjct: 208 DILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTAL 267

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+   A+ +  ++ + G +P   TY  +I GL+        I     K L EM  KG
Sbjct: 268 CKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAI-----KLLDEMRRKG 322

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           ++P+  TY+++     R  KVDEA      ++  G  P+
Sbjct: 323 LKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPN 361


>gi|227463012|gb|ACP39958.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227463014|gb|ACP39959.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 288

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 86/160 (53%), Gaps = 11/160 (6%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKG--HMPDVVAHTAVIE 130
           E+F  M+ +G + NAV    + + + K   T +AL+L  +++  G    P+V+ +T++I+
Sbjct: 34  ELFQAMKGQGFSPNAVTYSVLLEGICKYRSTEKALELLGEMEKAGGNCSPNVITYTSMIK 93

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
           ++   GQ  EALR+  RM A    PN  T   LI GL     G+ +   +A K +  + G
Sbjct: 94  SFCEKGQTIEALRILDRMEACQCVPNRITVITLITGL--CTKGHVE---EAYKLIDRVAG 148

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           +G+  N+  Y+++  A +R  +++EA  L ++M   G  P
Sbjct: 149 RGV-SNSDCYSSLVLALIRINRLNEAEKLFRKMLVSGAKP 187



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 67/118 (56%), Gaps = 7/118 (5%)

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA--AADGNAKI 177
           PD++ + A+I+ + +AG+ +EA  +F  M   G +PNA TY+VL++G+    + +   ++
Sbjct: 11  PDMMTYFAMIKGFCNAGRLEEACELFQAMKGQGFSPNAVTYSVLLEGICKYRSTEKALEL 70

Query: 178 LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAV 235
           LG+     ME  G    PN  TYT++ ++F    +  EA  +L +M+A   VP+   V
Sbjct: 71  LGE-----MEKAGGNCSPNVITYTSMIKSFCEKGQTIEALRILDRMEACQCVPNRITV 123


>gi|148907853|gb|ABR17050.1| unknown [Picea sitchensis]
 gi|224284228|gb|ACN39850.1| unknown [Picea sitchensis]
          Length = 420

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 79/158 (50%), Gaps = 8/158 (5%)

Query: 76  EIFHKMRTEG-LTNNAV--KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E   +M   G   NNA    +   L + G   EA  L  ++   G   DVV + ++I+  
Sbjct: 254 EFLDEMIISGCFPNNATYTALIHGLCQKGSFLEAAVLLNEMVAIGCELDVVIYNSLIDGL 313

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+   A  + + M+  GVAP+ +TY  LI+GL      +A +L +A   + EM  KG
Sbjct: 314 CKMGELDFAREMQILMVEKGVAPDVFTYTSLIQGLC-----DAGLLDEALGLMQEMRAKG 368

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           + PN+ TYT +   F +A + D A  L+ +MK+ G +P
Sbjct: 369 IVPNSVTYTTLINGFTQADRTDHALQLVNEMKSNGLMP 406



 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 85/191 (44%), Gaps = 35/191 (18%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGH--MPDVVAHTAVIE 130
           +I  +M   G+T N V    +   L   G    A+ +  ++K +G+   P+VV +T +I 
Sbjct: 182 DILDEMEHRGITPNTVTYTALIQGLCDCGEVERAILVLKEMKLRGNECCPNVVTYTQLIH 241

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA---------------------- 168
                G  +  +     M+ SG  PN  TY  LI GL                       
Sbjct: 242 GLCQKGLFEMGMEFLDEMIISGCFPNNATYTALIHGLCQKGSFLEAAVLLNEMVAIGCEL 301

Query: 169 ------AAADGNAKI--LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
                 +  DG  K+  L  A++  + MV KG+ P+  TYT++ +    A  +DEA GL+
Sbjct: 302 DVVIYNSLIDGLCKMGELDFAREMQILMVEKGVAPDVFTYTSLIQGLCDAGLLDEALGLM 361

Query: 221 QQMKAKGFVPD 231
           Q+M+AKG VP+
Sbjct: 362 QEMRAKGIVPN 372



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 65/134 (48%), Gaps = 5/134 (3%)

Query: 94  FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGV 153
            + L K G   EA+++F ++++KG  PD   +  +I       Q +  + +   M A G 
Sbjct: 98  INGLCKKGQIAEAMEIFREMEEKGSAPDSFTYNILINGLCKDAQLEMGVSLMDEMQARGF 157

Query: 154 APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV 213
           +P   TY  LI G   A   +A     A   L EM  +G+ PN  TYTA+ +      +V
Sbjct: 158 SPTVVTYTTLIHGFCTAGRVDA-----AMDILDEMEHRGITPNTVTYTALIQGLCDCGEV 212

Query: 214 DEARGLLQQMKAKG 227
           + A  +L++MK +G
Sbjct: 213 ERAILVLKEMKLRG 226



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 82/201 (40%), Gaps = 36/201 (17%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           EIF +M  +G   ++     + + L KD      + L  +++ +G  P VV +T +I  +
Sbjct: 112 EIFREMEEKGSAPDSFTYNILINGLCKDAQLEMGVSLMDEMQARGFSPTVVTYTTLIHGF 171

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKIL-------------- 178
            +AG+   A+ +   M   G+ PN  TY  LI+GL    +    IL              
Sbjct: 172 CTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLCDCGEVERAILVLKEMKLRGNECCP 231

Query: 179 ----------GDAQK--------YLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
                     G  QK        +L EM+  G  PN  TYTA+     +     EA  LL
Sbjct: 232 NVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGCFPNNATYTALIHGLCQKGSFLEAAVLL 291

Query: 221 QQMKAKGFVPDEKAVKEALID 241
            +M A G   D   +  +LID
Sbjct: 292 NEMVAIGCELD-VVIYNSLID 311



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 60/124 (48%), Gaps = 8/124 (6%)

Query: 121 DVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGD 180
           DV++++  I      GQ  EA+ +F  M   G AP+++TY +LI GL   A      L  
Sbjct: 90  DVISYSRKINGLCKKGQIAEAMEIFREMEEKGSAPDSFTYNILINGLCKDAQ-----LEM 144

Query: 181 AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE---KAVKE 237
               + EM  +G  P   TYT +   F  A +VD A  +L +M+ +G  P+     A+ +
Sbjct: 145 GVSLMDEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQ 204

Query: 238 ALID 241
            L D
Sbjct: 205 GLCD 208



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 5/115 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K G    A ++   + +KG  PDV  +T++I+    AG   EAL +   M A G
Sbjct: 309 LIDGLCKMGELDFAREMQILMVEKGVAPDVFTYTSLIQGLCDAGLLDEALGLMQEMRAKG 368

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAF 207
           + PN+ TY  LI G   A   +      A + + EM   G+ P    Y  +F++ 
Sbjct: 369 IVPNSVTYTTLINGFTQADRTD-----HALQLVNEMKSNGLMPAGDIYKILFKSL 418


>gi|115446773|ref|NP_001047166.1| Os02g0565400 [Oryza sativa Japonica Group]
 gi|113536697|dbj|BAF09080.1| Os02g0565400, partial [Oryza sativa Japonica Group]
          Length = 353

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 84/180 (46%), Gaps = 36/180 (20%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +  AL + G    A++L  Q+KDKG  P ++++  VI+    AG+ KEAL +   M++ G
Sbjct: 173 LLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKG 232

Query: 153 VAPNAYTYAVLIKGL--------AAAADG--------------NAKILGDAQK------- 183
           + P+  TY+ +  GL        A  A G              NA ILG  ++       
Sbjct: 233 LQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAI 292

Query: 184 -YLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDK 242
                M+G G  PN  TYT + E       + EAR LL ++ ++G       V+++LI+K
Sbjct: 293 DLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRG------VVRKSLINK 346



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 63/127 (49%), Gaps = 5/127 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +A++L  +++DKG  PD+V +  V+      G+  +A+     + + G  PN  +Y +++
Sbjct: 10  QAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVL 69

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           KGL  A         DA++ + EM  KG  PN  T+  +     R   V+ A  +L+Q+ 
Sbjct: 70  KGLCTAERWE-----DAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIP 124

Query: 225 AKGFVPD 231
             G  P+
Sbjct: 125 KYGCTPN 131



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 5/127 (3%)

Query: 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
            +A +L  ++  KG  P+VV    +I      G  + AL V  ++   G  PN+ +Y  L
Sbjct: 79  EDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPL 138

Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           +           K +  A  +L  MV +G  P+  +Y  +  A  R+ +VD A  LL Q+
Sbjct: 139 LHAFC-----KQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQL 193

Query: 224 KAKGFVP 230
           K KG  P
Sbjct: 194 KDKGCAP 200


>gi|186510399|ref|NP_189158.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273968|sp|Q9LSF5.1|PP254_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g25210, mitochondrial; Flags: Precursor
 gi|9294178|dbj|BAB02080.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643472|gb|AEE76993.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 379

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 61/128 (47%), Gaps = 5/128 (3%)

Query: 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
           H    L  Q+K  G +PD      +I+AYA   +  EA+RVF  M   G  PNAYTY+ L
Sbjct: 205 HAVRSLTKQMKSNGVIPDTFVLNMIIKAYAKCLEVDEAIRVFKEMALYGSEPNAYTYSYL 264

Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           +KG+          +G    +  EM  KGM PN   Y  +  +    +++DEA  ++  M
Sbjct: 265 VKGVCEKGR-----VGQGLGFYKEMQVKGMVPNGSCYMVLICSLSMERRLDEAVEVVYDM 319

Query: 224 KAKGFVPD 231
            A    PD
Sbjct: 320 LANSLSPD 327


>gi|341605713|gb|AEK82959.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605715|gb|AEK82960.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605717|gb|AEK82961.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605719|gb|AEK82962.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605755|gb|AEK82980.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605757|gb|AEK82981.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605759|gb|AEK82982.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605827|gb|AEK83016.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605829|gb|AEK83017.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 76/146 (52%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+G  +E   +F  +  KG  P+V  +T +I+ YA +G  ++A+R+  RM+  G  P
Sbjct: 26  GLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKP 85

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY+V++ GL      N ++  +A  Y       G+  N+  Y+++ +   +A ++DE
Sbjct: 86  DVVTYSVVVNGLCK----NGRV-EEALDYFQTCRFNGLAINSMFYSSLIDGLGKAGRIDE 140

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      ALID
Sbjct: 141 AERLFEEMSEKGCTRDSYCYN-ALID 165



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 72/134 (53%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ D+G  PDVV ++ V+      G+ +EAL  F     +G
Sbjct: 58  LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNG 117

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +A N+  Y+ LI GL     G A  + +A++   EM  KG   ++  Y A+ +A  +  K
Sbjct: 118 LAINSMFYSSLIDGL-----GKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGK 172

Query: 213 VDEARGLLQQMKAK 226
           VDEA  L ++M+ +
Sbjct: 173 VDEAMTLFKRMEEE 186



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 6/143 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
            + L+ ++ +KG        + VI      G+  E   VF  M+  G  PN   Y VLI 
Sbjct: 1   CVALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLID 60

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G A +       + DA + L  M+ +G +P+  TY+ V     +  +V+EA    Q  + 
Sbjct: 61  GYAKSGS-----VEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRF 115

Query: 226 KGFVPDEKAVKEALIDKRGQGFR 248
            G   +      +LID  G+  R
Sbjct: 116 NGLAIN-SMFYSSLIDGLGKAGR 137


>gi|218196467|gb|EEC78894.1| hypothetical protein OsI_19266 [Oryza sativa Indica Group]
 gi|222630938|gb|EEE63070.1| hypothetical protein OsJ_17878 [Oryza sativa Japonica Group]
          Length = 939

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 76/153 (49%), Gaps = 8/153 (5%)

Query: 81  MRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ 137
           M + GLT N +    +   L K G    A+ LF +++ KG  P+ + +  +I+ Y   G+
Sbjct: 761 MLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGK 820

Query: 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA 197
             EA ++  +M+  G+ P   TY++LI GL          + +A K L +M+   + PN 
Sbjct: 821 TTEAFKLKQKMVEEGIQPTVITYSILIYGLCTQG-----YMEEAIKLLDQMIENNVDPNY 875

Query: 198 GTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
            TY  +   ++++  ++E   L  +M  +G +P
Sbjct: 876 ITYCTLIHGYIKSGNMEEISKLYDEMHIRGLLP 908



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/135 (30%), Positives = 66/135 (48%), Gaps = 5/135 (3%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K G   +A  LF  +++K  +PD   ++++I   A++G   EA  +   ML++G+ P
Sbjct: 709 GLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLTP 768

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           N  TY  LI GL  +       L  A     ++  KG+ PN  TY  + + + +  K  E
Sbjct: 769 NIITYNSLIYGLCKSGK-----LSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTE 823

Query: 216 ARGLLQQMKAKGFVP 230
           A  L Q+M  +G  P
Sbjct: 824 AFKLKQKMVEEGIQP 838



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 62/138 (44%), Gaps = 5/138 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +FD   K G    A  L  +++  G  P V    + I  +  A Q  +   +   M A G
Sbjct: 540 LFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARG 599

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           ++PN  TY  LI G     +GN   L +A     EMV  GM PN    +A+   F +  K
Sbjct: 600 LSPNLVTYGALIAGW--CKEGN---LHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGK 654

Query: 213 VDEARGLLQQMKAKGFVP 230
           VDEA  +LQ++     +P
Sbjct: 655 VDEANLVLQKLVNIDMIP 672



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 73/153 (47%), Gaps = 8/153 (5%)

Query: 79  HKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASA 135
           ++MR  G+  N      M + L K G   E  ++  +++D G  PD  ++  +I+ Y   
Sbjct: 348 NEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCRE 407

Query: 136 GQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP 195
           G  ++A  +   M+ +G+A    TY  L+KG  +        + DA +    M+ +G+ P
Sbjct: 408 GSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCS-----LHAIDDALRLWFLMLKRGVAP 462

Query: 196 NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
           N  + + + +   +A K ++A  L ++  A+G 
Sbjct: 463 NEISCSTLLDGLFKAGKTEQALNLWKETLARGL 495



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 10/170 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E   +M   GL  N V    + D     G T +A ++   ++ KG  P+VV +T +++ Y
Sbjct: 239 EFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLLVKGY 298

Query: 133 ASAGQGKEALRVFMRMLASG-VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              G+ +EA RV   M  +G +  +   Y ++I G           + DA +   EM   
Sbjct: 299 CKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRGR-----MDDATRVRNEMRDA 353

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           G+  N   Y  +     +  +++E + +LQ+M+  G  PD K     LID
Sbjct: 354 GIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPD-KYSYNTLID 402



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/126 (24%), Positives = 66/126 (52%), Gaps = 5/126 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +AL+L+  +  +G  P+ ++ + +++    AG+ ++AL ++   LA G+A N  T+  +I
Sbjct: 447 DALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVI 506

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            GL          + +A++ L  M      P++ TY  +F+ + +  ++  A  L+ +M+
Sbjct: 507 NGLCKIGR-----MAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKME 561

Query: 225 AKGFVP 230
             GF P
Sbjct: 562 HLGFAP 567



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 79/204 (38%), Gaps = 44/204 (21%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMP-DVVAHTAVIE 130
           + I   ++ +GL+ N V    +     KDG   EA ++  ++K+ G +  D VA+  +I 
Sbjct: 273 RRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMIN 332

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
            Y   G+  +A RV   M  +G+  N + Y  +I GL          + + QK L EM  
Sbjct: 333 GYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGR-----MEEVQKVLQEMED 387

Query: 191 KGMRPNAGTYTAVFEAFVRA-----------------------------------QKVDE 215
            GMRP+  +Y  + + + R                                      +D+
Sbjct: 388 VGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDD 447

Query: 216 ARGLLQQMKAKGFVPDEKAVKEAL 239
           A  L   M  +G  P+E +    L
Sbjct: 448 ALRLWFLMLKRGVAPNEISCSTLL 471



 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 69/161 (42%), Gaps = 8/161 (4%)

Query: 74  LQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           +Q++  +M   G+  +      + D   ++G   +A ++   +   G     + +  +++
Sbjct: 378 VQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLK 437

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
            + S     +ALR++  ML  GVAPN  + + L+ GL  A          A     E + 
Sbjct: 438 GFCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTE-----QALNLWKETLA 492

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +G+  N  T+  V     +  ++ EA  LL +MK     PD
Sbjct: 493 RGLAKNVITFNTVINGLCKIGRMAEAEELLDRMKELRCPPD 533



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 82/185 (44%), Gaps = 25/185 (13%)

Query: 51  SKLPPPYDPFKKVVDEEPTDPRNLQEIFHKMRTEGLTNNAVKMFDAL----SKDGLTHEA 106
           S LPP           EP  P +L E++        T +AV  FD L    +  G    A
Sbjct: 124 SSLPP---------HAEPLFP-HLAEVYRD-----FTFSAVS-FDLLLRAHADAGQLSSA 167

Query: 107 LQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKG 166
           L +F  +   G  P + +   ++     +G    A  V+ +M  +GV P+ +T A++ K 
Sbjct: 168 LNVFDGMGKVGCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQMRIAGVLPDEFTVAIMAK- 226

Query: 167 LAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK 226
            A   DG    +  A +++ EM G G+  N   Y AV + +      ++AR +L+ ++ K
Sbjct: 227 -AYCRDGR---VAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQRK 282

Query: 227 GFVPD 231
           G  P+
Sbjct: 283 GLSPN 287



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 74/182 (40%), Gaps = 24/182 (13%)

Query: 74  LQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           + +I  +M   GL+ N V    +     K+G  HEA  L+ ++ + G  P+V   +A++ 
Sbjct: 588 VNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMS 647

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA----AAADGNAK---------I 177
            +   G+  EA  V  +++   + P      + I  ++      ADGN           I
Sbjct: 648 CFYKEGKVDEANLVLQKLVNIDMIPGCSISTIEIDKISHVVDTIADGNPHSANVMWNVII 707

Query: 178 LG--------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFV 229
            G        DA+     +  K   P+  TY+++      +  +DEA  L   M + G  
Sbjct: 708 FGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAGLT 767

Query: 230 PD 231
           P+
Sbjct: 768 PN 769



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 66/144 (45%), Gaps = 6/144 (4%)

Query: 92  KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
           ++ + L + G    A  ++ Q++  G +PD      + +AY   G+  +A+     M   
Sbjct: 188 RLLNKLVQSGDPGMAAMVYGQMRIAGVLPDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGM 247

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           G+  N   Y  ++               DA++ L  +  KG+ PN  TYT + + + +  
Sbjct: 248 GLEVNLVAYHAVMDCYCGMGWTE-----DARRILESLQRKGLSPNVVTYTLLVKGYCKDG 302

Query: 212 KVDEARGLLQQMKAKG-FVPDEKA 234
           +++EA  ++++MK  G  V DE A
Sbjct: 303 RMEEAERVVKEMKETGDIVVDEVA 326



 Score = 44.7 bits (104), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 59/130 (45%), Gaps = 15/130 (11%)

Query: 112 QIKDKGHMPDVVA----HTA------VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYA 161
           +I    H+ D +A    H+A      +I     +G+  +A  +F  +      P+ +TY+
Sbjct: 680 EIDKISHVVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYS 739

Query: 162 VLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221
            LI G AA+       + +A      M+  G+ PN  TY ++     ++ K+  A  L  
Sbjct: 740 SLIHGCAASGS-----IDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFN 794

Query: 222 QMKAKGFVPD 231
           ++++KG  P+
Sbjct: 795 KLQSKGISPN 804


>gi|399107212|gb|AFP20370.1| At1g03560-like protein, partial [Capsella grandiflora]
          Length = 212

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 76/146 (52%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+G  +E   +F  +  KG  P+V  +T +I+ YA +G  ++A+R+  RM+  G  P
Sbjct: 28  GLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKP 87

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY+V++ GL      N ++  +A  Y       G+  N+  Y+++ +   +A ++DE
Sbjct: 88  DVVTYSVVVNGLCK----NGRV-EEALDYFQTCRFNGLAINSMFYSSLIDGLGKAGRIDE 142

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      ALID
Sbjct: 143 AERLFEEMSEKGCTRDSYCYN-ALID 167



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 72/134 (53%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ D+G  PDVV ++ V+      G+ +EAL  F     +G
Sbjct: 60  LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNG 119

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +A N+  Y+ LI GL     G A  + +A++   EM  KG   ++  Y A+ +A  +  K
Sbjct: 120 LAINSMFYSSLIDGL-----GKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGK 174

Query: 213 VDEARGLLQQMKAK 226
           VDEA  L ++M+ +
Sbjct: 175 VDEAMALFKRMEEE 188



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 6/143 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
            + L+ ++ +KG        + VI      G+  E   VF  M+  G  PN   Y VLI 
Sbjct: 3   CVALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLID 62

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G A +       + DA + L  M+ +G +P+  TY+ V     +  +V+EA    Q  + 
Sbjct: 63  GYAKSGS-----VEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRF 117

Query: 226 KGFVPDEKAVKEALIDKRGQGFR 248
            G   +      +LID  G+  R
Sbjct: 118 NGLAIN-SMFYSSLIDGLGKAGR 139


>gi|399107208|gb|AFP20368.1| At1g03560-like protein, partial [Capsella grandiflora]
          Length = 212

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 76/146 (52%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+G  +E   +F  +  KG  P+V  +T +I+ YA +G  ++A+R+  RM+  G  P
Sbjct: 28  GLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKP 87

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY+V++ GL    +G  +   +A  Y       G+  N+  Y+++ +   +A ++DE
Sbjct: 88  DVVTYSVVVNGL--CKNGXVE---EALDYFQTCRFNGLAINSXFYSSLIDGLGKAGRIDE 142

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      ALID
Sbjct: 143 AERLFEEMSEKGCTRDSYCYN-ALID 167



 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 71/134 (52%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ D+G  PDVV ++ V+      G  +EAL  F     +G
Sbjct: 60  LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGXVEEALDYFQTCRFNG 119

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +A N+  Y+ LI GL     G A  + +A++   EM  KG   ++  Y A+ +A  +  K
Sbjct: 120 LAINSXFYSSLIDGL-----GKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGK 174

Query: 213 VDEARGLLQQMKAK 226
           VDEA  L ++M+ +
Sbjct: 175 VDEAMTLFKRMEEE 188



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 60/143 (41%), Gaps = 6/143 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
            + L+ ++ +KG        + VI      G+  E   VF  M+  G  PN   Y VLI 
Sbjct: 3   CVALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLID 62

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G A +       + DA + L  M+ +G +P+  TY+ V     +   V+EA    Q  + 
Sbjct: 63  GYAKSGS-----VEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGXVEEALDYFQTCRF 117

Query: 226 KGFVPDEKAVKEALIDKRGQGFR 248
            G   +      +LID  G+  R
Sbjct: 118 NGLAIN-SXFYSSLIDGLGKAGR 139


>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
          Length = 629

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 93/205 (45%), Gaps = 31/205 (15%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F +M   GL  N V    +   L + G    A ++F ++   G  PD++ ++ +++  
Sbjct: 416 ELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGL 475

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+ ++AL VF  +  S + P+ YTY ++I+G+  A       + D       +  KG
Sbjct: 476 CKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGK-----VEDGWDLFCSLSLKG 530

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD---------------EKAVKE 237
           ++PN   YT +   F R    +EA  L ++MK  G +PD               +KA   
Sbjct: 531 VKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKAASA 590

Query: 238 ALI-DKRGQGFRG-------VINIL 254
            LI + R  GF G       VIN+L
Sbjct: 591 ELIKEMRSCGFVGDASTISMVINML 615



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 71/139 (51%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K     +A  LF +++ KG  PDV  + ++I    + G+  +A R+   M+   
Sbjct: 261 IIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERK 320

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN  T++ LI   A   +G    L +A+K   EM+ + + P+  TY+++   F    +
Sbjct: 321 INPNVVTFSALID--AFVKEGK---LVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDR 375

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +DEA+ + + M +K   P+
Sbjct: 376 LDEAKHMFELMISKDCFPN 394



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 75/164 (45%), Gaps = 8/164 (4%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           Q+IF KM ++G+  + +    + D L K G   +AL +F  ++     PD+  +  +IE 
Sbjct: 450 QKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEG 509

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              AG+ ++   +F  +   GV PN   Y  +I G          +  +A     EM   
Sbjct: 510 MCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKG-----LKEEADALFREMKED 564

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAV 235
           G  P++G Y  +  A +R      +  L+++M++ GFV D   +
Sbjct: 565 GTLPDSGCYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTI 608



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 67/139 (48%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DA  K+G   EA +L+ ++  +   PD+  ++++I  +    +  EA  +F  M++  
Sbjct: 331 LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKD 390

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN  TY  LIKG        AK + +  +   EM  +G+  N  TY  + +   +A  
Sbjct: 391 CFPNVVTYNTLIKGFC-----KAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGD 445

Query: 213 VDEARGLLQQMKAKGFVPD 231
            D A+ + ++M + G  PD
Sbjct: 446 CDMAQKIFKKMVSDGVPPD 464



 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 5/137 (3%)

Query: 95  DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           + L K G    AL L  +++      DVV +  +I+         +A  +F +M   G+ 
Sbjct: 228 NGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIR 287

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
           P+ +TY  LI  L      N     DA + L  M+ + + PN  T++A+ +AFV+  K+ 
Sbjct: 288 PDVFTYNSLISCLC-----NYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLV 342

Query: 215 EARGLLQQMKAKGFVPD 231
           EA  L  +M  +   PD
Sbjct: 343 EAEKLYDEMIKRSIDPD 359



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 59/137 (43%), Gaps = 10/137 (7%)

Query: 100 DGLTH-----EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           +G  H     +A+ L  Q+ + G+ PD V    +I       +  EA+ +  +M+  G  
Sbjct: 158 NGYCHSKRISDAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQ 217

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
           P+  TY  ++ GL    D +      A   L +M    +  +   Y  + +   + + +D
Sbjct: 218 PDLVTYGAVVNGLCKRGDIDL-----ALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHID 272

Query: 215 EARGLLQQMKAKGFVPD 231
           +A  L  +M+ KG  PD
Sbjct: 273 DAFALFNKMETKGIRPD 289



 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 30/141 (21%), Positives = 65/141 (46%), Gaps = 9/141 (6%)

Query: 95  DALSKDGLTH----EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           + LS++ L +    +A+ LF ++     +P +V    ++ A A   +    + +  RM  
Sbjct: 49  EKLSRNALLNLKLDDAIGLFGEMVQSRPLPSIVEFNKLLSAIAKMKKFDLVISLGERMQN 108

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
             ++ + Y+Y +LI      +      L  A   L +M+  G  P+  T +++   +  +
Sbjct: 109 LRISYDLYSYNILINCFCRRSQ-----LPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHS 163

Query: 211 QKVDEARGLLQQMKAKGFVPD 231
           +++ +A  L+ QM   G+ PD
Sbjct: 164 KRISDAVALVDQMVEMGYKPD 184


>gi|147838532|emb|CAN65388.1| hypothetical protein VITISV_038361 [Vitis vinifera]
          Length = 676

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 77/159 (48%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E++ +M   G+  N      +   L KDG T +  +   +++++G  PD+V +  +I +Y
Sbjct: 289 EVYEEMERFGIAPNLYTFNILTHVLCKDGDTGKVNKFLEKMEEEGFDPDIVTYNTLINSY 348

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+  +A  ++  M   GV P+  +Y  L+ GL    +G  +   +A +    MV +G
Sbjct: 349 CRKGRLDDAFYLYKIMYRRGVVPDLVSYTALMNGL--CKEGRVR---EAHQLFHRMVHRG 403

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + P+  TY  +   + +  K+ E+R LL  M   G  PD
Sbjct: 404 LSPDIVTYNTLIHGYCKEGKMQESRSLLHDMIWNGISPD 442



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 79/161 (49%), Gaps = 8/161 (4%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D   + +   KM  EG   + V    + ++  + G   +A  L+  +  +G +PD+V++T
Sbjct: 318 DTGKVNKFLEKMEEEGFDPDIVTYNTLINSYCRKGRLDDAFYLYKIMYRRGVVPDLVSYT 377

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
           A++      G+ +EA ++F RM+  G++P+  TY  LI G           + +++  L 
Sbjct: 378 ALMNGLCKEGRVREAHQLFHRMVHRGLSPDIVTYNTLIHGYCKEGK-----MQESRSLLH 432

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
           +M+  G+ P++ T   + E + +  K   A  L+ +++  G
Sbjct: 433 DMIWNGISPDSFTCWVLVEGYGKEGKFLSALNLVVELQRFG 473



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 69/135 (51%), Gaps = 5/135 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K+G   EA QLF ++  +G  PD+V +  +I  Y   G+ +E+  +   M+ +G
Sbjct: 379 LMNGLCKEGRVREAHQLFHRMVHRGLSPDIVTYNTLIHGYCKEGKMQESRSLLHDMIWNG 438

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           ++P+++T  VL++G         K L  A   ++E+   G+  +   Y+ +  A  R  +
Sbjct: 439 ISPDSFTCWVLVEGYGK----EGKFLS-ALNLVVELQRFGVSISQDIYSYLIVALCRENR 493

Query: 213 VDEARGLLQQMKAKG 227
              A+ LL++M   G
Sbjct: 494 PFAAKNLLERMSQDG 508



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 9/143 (6%)

Query: 93  MFDALSKD----GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRM 148
           +FD L K     G   E L+ F ++   G +P V+    ++              V+  M
Sbjct: 235 VFDMLVKAYLRMGRVREGLRSFRRMLRVGFVPTVITSNYLLNGLLKLNYTDRCWEVYEEM 294

Query: 149 LASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFV 208
              G+APN YT+ +L   L    D      G   K+L +M  +G  P+  TY  +  ++ 
Sbjct: 295 ERFGIAPNLYTFNILTHVLCKDGDT-----GKVNKFLEKMEEEGFDPDIVTYNTLINSYC 349

Query: 209 RAQKVDEARGLLQQMKAKGFVPD 231
           R  ++D+A  L + M  +G VPD
Sbjct: 350 RKGRLDDAFYLYKIMYRRGVVPD 372



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 77/198 (38%), Gaps = 33/198 (16%)

Query: 72  RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R   ++FH+M   GL+ + V    +     K+G   E+  L   +   G  PD      +
Sbjct: 390 REAHQLFHRMVHRGLSPDIVTYNTLIHGYCKEGKMQESRSLLHDMIWNGISPDSFTCWVL 449

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA--------------AAADGN 174
           +E Y   G+   AL + + +   GV+ +   Y+ LI  L                + DG+
Sbjct: 450 VEGYGKEGKFLSALNLVVELQRFGVSISQDIYSYLIVALCRENRPFAAKNLLERMSQDGH 509

Query: 175 ----------------AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218
                              + +A    MEMV K ++PN  TY AV     R  +  E   
Sbjct: 510 KXELEIYNELIKSFCQCDCIAEALLLKMEMVDKEIKPNLATYRAVJGCLSRLSRSMEGES 569

Query: 219 LLQQMKAKGFVPDEKAVK 236
           L+ +M A G +PD +  +
Sbjct: 570 LVGEMVASGXLPDLEICR 587



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 62/145 (42%), Gaps = 6/145 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
           AL ++     A  L  ++   GH  ++  +  +I+++       EAL + M M+   + P
Sbjct: 487 ALCRENRPFAAKNLLERMSQDGHKXELEIYNELIKSFCQCDCIAEALLLKMEMVDKEIKP 546

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           N  TY  +J  L+  +        + +  + EMV  G  P+     A+F  + R   +D+
Sbjct: 547 NLATYRAVJGCLSRLSRS-----MEGESLVGEMVASGXLPDLEICRALFYGYCRENDIDK 601

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALI 240
           A  LL    AK F   +     ALI
Sbjct: 602 AESLL-SFXAKEFQIHDTESFNALI 625


>gi|380875521|gb|AFF27500.1| PPR domain-containing protein [Oryza sativa Indica Group]
          Length = 742

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 77/160 (48%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+F +M  +G++ NA+    + D L KD    +A  L  Q+  +G  P+ + + +++  
Sbjct: 481 EEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFGLINQMISEGLQPNNITYNSILTH 540

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y   G  K+A  +   M A+G   +  TY  LI GL  A  G  ++   A K L  M  K
Sbjct: 541 YCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKA--GRTQV---ALKVLRGMRIK 595

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           GMRP    Y  V ++  R   + +A  L ++M   G  PD
Sbjct: 596 GMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPD 635



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 78/154 (50%), Gaps = 5/154 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +AL K G  H AL+LF ++K+ G  PD V +  +I+   S G+  +AL +   M ++G
Sbjct: 397 LINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTG 456

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
              +  TY  +I GL          + +A++   +M  +G+  NA T+  + +   + +K
Sbjct: 457 CPRSTITYNTIIDGLCKKMR-----IEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKK 511

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
           +D+A GL+ QM ++G  P+       L     QG
Sbjct: 512 IDDAFGLINQMISEGLQPNNITYNSILTHYCKQG 545



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 6/147 (4%)

Query: 95  DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           + L K+G   EA  +  Q+ D+G +PD+     +I A  +  + +EAL +  ++   GV+
Sbjct: 329 NCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVS 388

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
           P+ YT+ +LI  L    D +      A +   EM   G  P+  TY  + +      K+ 
Sbjct: 389 PDVYTFNILINALCKVGDPHL-----ALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLG 443

Query: 215 EARGLLQQMKAKGFVPDEKAVKEALID 241
           +A  LL+ M++ G  P        +ID
Sbjct: 444 KALDLLKDMESTG-CPRSTITYNTIID 469



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 80/191 (41%), Gaps = 33/191 (17%)

Query: 74  LQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           L+ ++ +M   G+  + V    +  AL +      A+ +  ++  +G  PD    T +++
Sbjct: 165 LESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQ 224

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA--------------AAADG--- 173
            +   G  + ALRV  RML  G +    T  VLI G                  ADG   
Sbjct: 225 GFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEP 284

Query: 174 -----NAKI--------LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
                N  +        +G A K +  MV +G  P+  TY  V     +  +++EA+G+L
Sbjct: 285 DQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGIL 344

Query: 221 QQMKAKGFVPD 231
            QM  +G +PD
Sbjct: 345 NQMVDRGCLPD 355



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 73/168 (43%), Gaps = 8/168 (4%)

Query: 75  QEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           QEI      + +T N     + L ++     AL++   +  +GH PDV  +  V+     
Sbjct: 276 QEIADGFEPDQITYNT--FVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCK 333

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            GQ +EA  +  +M+  G  P+  T+  LI   AA   GN   L +A     ++  KG+ 
Sbjct: 334 NGQLEEAKGILNQMVDRGCLPDITTFNTLI---AALCTGNR--LEEALDLARQVTVKGVS 388

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDK 242
           P+  T+  +  A  +      A  L ++MK  G  PDE      LID 
Sbjct: 389 PDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDE-VTYNTLIDN 435



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 59/139 (42%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +   K G   +AL    Q    G  PD + +   +           AL+V   M+  G
Sbjct: 257 LINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEG 316

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+ +TY +++  L          L +A+  L +MV +G  P+  T+  +  A     +
Sbjct: 317 HDPDVFTYNIVVNCLCKNGQ-----LEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNR 371

Query: 213 VDEARGLLQQMKAKGFVPD 231
           ++EA  L +Q+  KG  PD
Sbjct: 372 LEEALDLARQVTVKGVSPD 390



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 62/124 (50%), Gaps = 5/124 (4%)

Query: 109 LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
           +++++  +G  PDVV    +++A   A Q + A+ +   M + GVAP+  T+  L++G  
Sbjct: 168 VYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFV 227

Query: 169 AAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
                 A +   A+  ++EM   G      T   +   + +  +V++A G +QQ  A GF
Sbjct: 228 EEGSIEAALRVKAR--MLEM---GCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGF 282

Query: 229 VPDE 232
            PD+
Sbjct: 283 EPDQ 286



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 7/142 (4%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D +   +I   M   G   + V    + + L K G T  AL++   ++ KG  P   A+ 
Sbjct: 546 DIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYN 605

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
            V+++       ++AL +F  M   G  P+A TY ++ +GL     G  K   +A  +++
Sbjct: 606 PVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGG-GPIK---EAFDFML 661

Query: 187 EMVGKGMRPNAGTYTAVFEAFV 208
           EMV KG  P   ++  + E  +
Sbjct: 662 EMVDKGFIPEFSSFRMLAEGLL 683


>gi|357458533|ref|XP_003599547.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488595|gb|AES69798.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 636

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 86/171 (50%), Gaps = 18/171 (10%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D+L K  L  +A +L++Q+  K   PDVV  +A+I  +   GQ +EA  +F  M+   
Sbjct: 214 IIDSLCKHKLVIDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFREMVLKN 273

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+ YT+ +L+  L    +GN K    A+  L+ M+ +G+ PN  TY+++ + +    +
Sbjct: 274 INPDYYTFNILVDAL--CKEGNLK---GAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQ 328

Query: 213 VDEARGLLQQMKAKGFVPDE-------------KAVKEALIDKRGQGFRGV 250
           V++A+ +L  +   G  P+              K V EAL       F+G+
Sbjct: 329 VNKAKHVLNTISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGI 379



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 79/173 (45%), Gaps = 15/173 (8%)

Query: 62  KVVDEEPTDPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGH 118
           K+VDE  +       +F+ M+ +G+  + V    + D L K G    A +L  ++ D G 
Sbjct: 362 KMVDEALS-------LFNDMQFKGIAPDKVTYNSLIDGLCKSGRISYAWELVDEMHDNGQ 414

Query: 119 MPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKIL 178
             ++  +  +I+A        +A+ +  ++   G+ P+ YT+ +LI GL          L
Sbjct: 415 PANIFTYNCLIDALCKNHHVDQAIALVKKIKDQGIQPDMYTFNILIYGLCKVGR-----L 469

Query: 179 GDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +AQ    +++ KG   NA TY  +     +    DEA  LL +M   G +PD
Sbjct: 470 KNAQDVFQDLLSKGYSVNAWTYNIMVNGLCKEGLFDEAEALLSKMDDNGIIPD 522



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 71/137 (51%), Gaps = 5/137 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DAL K+    +A+ L  +IKD+G  PD+     +I      G+ K A  VF  +L+ G
Sbjct: 424 LIDALCKNHHVDQAIALVKKIKDQGIQPDMYTFNILIYGLCKVGRLKNAQDVFQDLLSKG 483

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            + NA+TY +++ GL         +  +A+  L +M   G+ P+A TY  + +A     +
Sbjct: 484 YSVNAWTYNIMVNGLCKEG-----LFDEAEALLSKMDDNGIIPDAVTYETLIQALFHKDE 538

Query: 213 VDEARGLLQQMKAKGFV 229
            ++A  LL++M A+  V
Sbjct: 539 NEKAEKLLREMIARDVV 555



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 6/149 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DAL K+G    A  +   +  +G MP+VV ++++++ Y    Q  +A  V   +   G
Sbjct: 284 LVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVNKAKHVLNTISQMG 343

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            APNA++Y  +I G         K++ +A     +M  KG+ P+  TY ++ +   ++ +
Sbjct: 344 AAPNAHSYCTMINGFCK-----IKMVDEALSLFNDMQFKGIAPDKVTYNSLIDGLCKSGR 398

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALID 241
           +  A  L+ +M   G  P        LID
Sbjct: 399 ISYAWELVDEMHDNG-QPANIFTYNCLID 426



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 65/156 (41%), Gaps = 30/156 (19%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A  + A+I   G+ PD +    +I+     G+ KEAL     +LA G   + ++Y  LI 
Sbjct: 122 AFSMMAKILKMGYEPDTITFNTLIKGLCLNGKVKEALHFHDHVLALGFHLDQFSYGTLIN 181

Query: 166 GLAAAA------------DGNA------------------KILGDAQKYLMEMVGKGMRP 195
           GL                DG                    K++ DA +   +M+ K + P
Sbjct: 182 GLCKIGETRTALQMLRKIDGKLVKINVVMYNTIIDSLCKHKLVIDAYELYSQMIAKKISP 241

Query: 196 NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +  T++A+   F    +++EA GL ++M  K   PD
Sbjct: 242 DVVTFSALIYGFCIVGQLEEAFGLFREMVLKNINPD 277



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 66/139 (47%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K G T  ALQ+  +I  K    +VV +  +I++        +A  ++ +M+A  
Sbjct: 179 LINGLCKIGETRTALQMLRKIDGKLVKINVVMYNTIIDSLCKHKLVIDAYELYSQMIAKK 238

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           ++P+  T++ LI G           L +A     EMV K + P+  T+  + +A  +   
Sbjct: 239 ISPDVVTFSALIYGFCIVGQ-----LEEAFGLFREMVLKNINPDYYTFNILVDALCKEGN 293

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +  A+ +L  M  +G +P+
Sbjct: 294 LKGAKNMLVVMMKEGVMPN 312


>gi|326513552|dbj|BAJ87795.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 538

 Score = 78.6 bits (192), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 77/161 (47%), Gaps = 8/161 (4%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +++ H M   G+ +N V    +    SK+G   EA +LF  ++ KG  P VV +  +I+ 
Sbjct: 363 KKLLHIMTENGVESNYVSYTTLISIHSKEGDMVEARRLFRDMEGKGSRPSVVTYNVMIDG 422

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y  +G  +EA R    M   G+ P+ YTYA L+ G     +G   +   A +   EM  +
Sbjct: 423 YIKSGSIREAERFKKEMEKKGLVPDVYTYAALVHG--HCVNGKVDV---ALRLFEEMKQR 477

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           G +PN   YTA+     +  + +EA      M A G  PD+
Sbjct: 478 GAKPNVVAYTALISGLAKEGRSEEAFQFYDNMLAAGLTPDD 518



 Score = 63.5 bits (153), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 76/178 (42%), Gaps = 9/178 (5%)

Query: 57  YDPFKKVVDEEPTDPRNLQEIFHKMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQI 113
           Y+P       +  D R + E+  +M + G+         + D LS  G   +   +F +I
Sbjct: 171 YNPLLDTYTRQKNDAR-VAEVLKEMESGGVEPTVGTYTILVDGLSTAGDISKVESVFDEI 229

Query: 114 KDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADG 173
           K K    DV  ++AVI AY  AG  + A  VF   + +G+ PN  TY  LI G       
Sbjct: 230 KRKNVAGDVYFYSAVINAYCRAGNVRRASEVFDECVGNGIEPNERTYGALINGFCKIGQI 289

Query: 174 NAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            A     A+  L +M  +G+  N   +  + + + R   VD+A  +   M+  G   D
Sbjct: 290 EA-----AEMLLTDMQLRGVGHNQIIFNTMIDGYCRHGMVDKALEIKAVMERMGIQLD 342



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 63/127 (49%), Gaps = 5/127 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +A +L   + + G   + V++T +I  ++  G   EA R+F  M   G  P+  TY V+I
Sbjct: 361 DAKKLLHIMTENGVESNYVSYTTLISIHSKEGDMVEARRLFRDMEGKGSRPSVVTYNVMI 420

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            G   +       + +A+++  EM  KG+ P+  TY A+        KVD A  L ++MK
Sbjct: 421 DGYIKSGS-----IREAERFKKEMEKKGLVPDVYTYAALVHGHCVNGKVDVALRLFEEMK 475

Query: 225 AKGFVPD 231
            +G  P+
Sbjct: 476 QRGAKPN 482



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/68 (38%), Positives = 44/68 (64%)

Query: 100 DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYT 159
           +G    AL+LF ++K +G  P+VVA+TA+I   A  G+ +EA + +  MLA+G+ P+   
Sbjct: 461 NGKVDVALRLFEEMKQRGAKPNVVAYTALISGLAKEGRSEEAFQFYDNMLAAGLTPDDTL 520

Query: 160 YAVLIKGL 167
           Y++L+  L
Sbjct: 521 YSMLVGSL 528



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 69/183 (37%), Gaps = 31/183 (16%)

Query: 89  NAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRM 148
           +A  + D   K G   +A +L  ++   G   +   +  +++ Y           V   M
Sbjct: 135 SASVVVDGFCKAGRMDDARRLLDEMPRHGVKLNACCYNPLLDTYTRQKNDARVAEVLKEM 194

Query: 149 LASGVAPNAYTYAVLIKGLAAAAD-----------GNAKILGD----------------- 180
            + GV P   TY +L+ GL+ A D               + GD                 
Sbjct: 195 ESGGVEPTVGTYTILVDGLSTAGDISKVESVFDEIKRKNVAGDVYFYSAVINAYCRAGNV 254

Query: 181 --AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEA 238
             A +   E VG G+ PN  TY A+   F +  +++ A  LL  M+ +G V   + +   
Sbjct: 255 RRASEVFDECVGNGIEPNERTYGALINGFCKIGQIEAAEMLLTDMQLRG-VGHNQIIFNT 313

Query: 239 LID 241
           +ID
Sbjct: 314 MID 316


>gi|357494939|ref|XP_003617758.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519093|gb|AET00717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 906

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 79/168 (47%), Gaps = 9/168 (5%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F + ++ G+  N V    + D   K G   EA  +  ++  KG  P+      +++A  
Sbjct: 679 LFEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWNCLLDALV 738

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            A +  EA   F  M     +PNA TY+++I GL      N   +     +  EM  +G+
Sbjct: 739 KAEEIDEAQVCFQNMKNLKCSPNAMTYSIMINGLCMIRKFNKAFV-----FWQEMQKQGL 793

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           +PN  TYT +     +A  V EARGL  + KA G VPD  A   A+I+
Sbjct: 794 KPNNITYTTMIAGLAKAGNVMEARGLFDRFKASGGVPD-SACYNAMIE 840



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 87/181 (48%), Gaps = 33/181 (18%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +++ +GL  +      +   L K G + E  +LF ++K++G   DV+A+  VI+ + 
Sbjct: 574 LFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFC 633

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA------------------------- 168
            +G+  +A ++   M   G+ P   TY  ++ GLA                         
Sbjct: 634 KSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVV 693

Query: 169 ---AAADGNAKI--LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
              +  DG  K+  + +A   L E++ KG+ PN+ T+  + +A V+A+++DEA+   Q M
Sbjct: 694 IYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWNCLLDALVKAEEIDEAQVCFQNM 753

Query: 224 K 224
           K
Sbjct: 754 K 754



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 73/151 (48%), Gaps = 6/151 (3%)

Query: 95  DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           D + K G   +   LF +IK +G +PDV +++ +I     AG  +E  ++F  M   G+ 
Sbjct: 560 DCVFKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLH 619

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
            +   Y  +I G   +       +  A + L EM  KG++P   TY +V +   +  ++D
Sbjct: 620 LDVLAYNTVIDGFCKSGK-----VDKAYQLLEEMKTKGLQPTVVTYGSVVDGLAKIDRLD 674

Query: 215 EARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
           EA  L ++ K+ G V     +  +LID  G+
Sbjct: 675 EAYMLFEEAKSIG-VDLNVVIYSSLIDGFGK 704



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 78/175 (44%), Gaps = 40/175 (22%)

Query: 91  VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRML- 149
             + D L + G   +A  L+ ++ D   +P+VV +T++I+ +   G+ ++  +++  M+ 
Sbjct: 486 CSLIDGLGRRGRVDDAYSLYEKMLDSDQIPNVVVYTSLIQNFFKCGRKEDGHKIYKEMVH 545

Query: 150 ----------------------------------ASGVAPNAYTYAVLIKGLAAAADGNA 175
                                             A G+ P+  +Y++LI GL  A  G +
Sbjct: 546 RGCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKA--GFS 603

Query: 176 KILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           +   +  K   EM  +G+  +   Y  V + F ++ KVD+A  LL++MK KG  P
Sbjct: 604 R---ETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQP 655



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 80/187 (42%), Gaps = 12/187 (6%)

Query: 50  KSKLPPPYDPFKKVVD--EEPTDPRNLQEIFHKMRTEGLTNNAVKMFDAL----SKDGLT 103
           K K  P +  +  ++        P  +  +FH+M+  G   N V +F  L    +++G  
Sbjct: 196 KFKFRPAFSAYTTLIGALSAANRPDPMLTLFHQMQEIGYEAN-VHLFTTLVRVFAREGRI 254

Query: 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
             AL L  ++K      D+V +   I+ +   G+   A + F  M A G+ P+  TY  L
Sbjct: 255 DAALSLLDEMKSNSFTADLVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGLVPDDVTYTTL 314

Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           I  L       A+ L +A +   E+      P    Y  +   +  A K DEA  LL++ 
Sbjct: 315 IGVLC-----KARRLDEAVELFEELDLNRSVPCVYAYNTMIMGYGSAGKFDEAYSLLERQ 369

Query: 224 KAKGFVP 230
           K KG +P
Sbjct: 370 KRKGCIP 376



 Score = 63.5 bits (153), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 69/157 (43%), Gaps = 8/157 (5%)

Query: 81  MRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ 137
           M+  GL  N +    M D L K     EA  +F  +  K   PD     ++I+     G+
Sbjct: 438 MKEAGLFPNIMTVNIMIDRLCKAQKLDEACSIFLGLDHKVCSPDSRTFCSLIDGLGRRGR 497

Query: 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA 197
             +A  ++ +ML S   PN   Y  LI+              D  K   EMV +G  P+ 
Sbjct: 498 VDDAYSLYEKMLDSDQIPNVVVYTSLIQNFFKCGRKE-----DGHKIYKEMVHRGCSPDL 552

Query: 198 GTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
               +  +   +A +V++ R L +++KA+G VPD ++
Sbjct: 553 MLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVRS 589



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 85/214 (39%), Gaps = 45/214 (21%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           + FH+M+ +GL  + V    +   L K     EA++LF ++     +P V A+  +I  Y
Sbjct: 294 KFFHEMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNTMIMGY 353

Query: 133 ASAGQGKEALRVFMRMLASGV----------------------------------APNAY 158
            SAG+  EA  +  R    G                                   APN  
Sbjct: 354 GSAGKFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIHDEMRQDAAPNLT 413

Query: 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218
           TY +LI  L  A +  A     A K    M   G+ PN  T   + +   +AQK+DEA  
Sbjct: 414 TYNILIDMLCKAGELEA-----ALKVQDTMKEAGLFPNIMTVNIMIDRLCKAQKLDEACS 468

Query: 219 LLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVIN 252
           +   +  K   PD +    +LID  G G RG ++
Sbjct: 469 IFLGLDHKVCSPDSRTFC-SLID--GLGRRGRVD 499



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 81/189 (42%), Gaps = 15/189 (7%)

Query: 50  KSKLPPPYDPFKKVVDEEPTDPRNL---QEIFHKMRTEG--LTNN-AVKMFDALSKDGLT 103
           ++  P  Y+ F  V+       RNL   ++I  +M   G  L+N+ +V++  +  K    
Sbjct: 129 QAHCPEVYNAFLMVM----ARTRNLDYLEQILEEMSVAGFGLSNHVSVELVASFVKSHKL 184

Query: 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
            EA  +   ++     P   A+T +I A ++A +    L +F +M   G   N + +  L
Sbjct: 185 KEAFGVIEMMRKFKFRPAFSAYTTLIGALSAANRPDPMLTLFHQMQEIGYEANVHLFTTL 244

Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           ++  A     +A     A   L EM       +   Y    + F +  KVD A     +M
Sbjct: 245 VRVFAREGRIDA-----ALSLLDEMKSNSFTADLVLYNVCIDCFGKVGKVDMAWKFFHEM 299

Query: 224 KAKGFVPDE 232
           KA+G VPD+
Sbjct: 300 KAQGLVPDD 308



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 68/145 (46%), Gaps = 8/145 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           Q  F  M+    + NA+    M + L      ++A   + +++ +G  P+ + +T +I  
Sbjct: 747 QVCFQNMKNLKCSPNAMTYSIMINGLCMIRKFNKAFVFWQEMQKQGLKPNNITYTTMIAG 806

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
            A AG   EA  +F R  ASG  P++  Y  +I+GL++A         DA     E   K
Sbjct: 807 LAKAGNVMEARGLFDRFKASGGVPDSACYNAMIEGLSSANKAM-----DAYIVFEETRLK 861

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEA 216
           G R N+ T   + +A  +A  +++A
Sbjct: 862 GCRVNSKTCVVLLDALHKADCLEQA 886



 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 67/139 (48%), Gaps = 6/139 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L + G   EAL++  +++     P++  +  +I+    AG+ + AL+V   M  +G
Sbjct: 384 ILTCLGRKGKVEEALRIHDEMRQDAA-PNLTTYNILIDMLCKAGELEAALKVQDTMKEAG 442

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN  T  ++I  L       A+ L +A    + +  K   P++ T+ ++ +   R  +
Sbjct: 443 LFPNIMTVNIMIDRLC-----KAQKLDEACSIFLGLDHKVCSPDSRTFCSLIDGLGRRGR 497

Query: 213 VDEARGLLQQMKAKGFVPD 231
           VD+A  L ++M     +P+
Sbjct: 498 VDDAYSLYEKMLDSDQIPN 516


>gi|260765969|gb|ACX50015.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260765971|gb|ACX50016.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260765973|gb|ACX50017.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260765975|gb|ACX50018.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260765977|gb|ACX50019.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260765979|gb|ACX50020.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260765981|gb|ACX50021.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260765983|gb|ACX50022.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260765985|gb|ACX50023.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260765987|gb|ACX50024.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260765989|gb|ACX50025.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260765991|gb|ACX50026.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260765993|gb|ACX50027.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260765995|gb|ACX50028.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260765997|gb|ACX50029.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260765999|gb|ACX50030.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766001|gb|ACX50031.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766003|gb|ACX50032.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766005|gb|ACX50033.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766007|gb|ACX50034.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766009|gb|ACX50035.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766011|gb|ACX50036.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766013|gb|ACX50037.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766015|gb|ACX50038.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766017|gb|ACX50039.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766019|gb|ACX50040.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766021|gb|ACX50041.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766023|gb|ACX50042.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766025|gb|ACX50043.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766027|gb|ACX50044.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766029|gb|ACX50045.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766031|gb|ACX50046.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766033|gb|ACX50047.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766035|gb|ACX50048.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766037|gb|ACX50049.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766039|gb|ACX50050.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766041|gb|ACX50051.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766043|gb|ACX50052.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766047|gb|ACX50054.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260766049|gb|ACX50055.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780310|gb|ACX50701.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780312|gb|ACX50702.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780318|gb|ACX50705.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780330|gb|ACX50711.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780332|gb|ACX50712.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780338|gb|ACX50715.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780340|gb|ACX50716.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780344|gb|ACX50718.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780346|gb|ACX50719.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780348|gb|ACX50720.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780394|gb|ACX50743.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780396|gb|ACX50744.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780398|gb|ACX50745.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780400|gb|ACX50746.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780402|gb|ACX50747.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780404|gb|ACX50748.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780406|gb|ACX50749.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780408|gb|ACX50750.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780410|gb|ACX50751.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780412|gb|ACX50752.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780414|gb|ACX50753.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780416|gb|ACX50754.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780418|gb|ACX50755.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780420|gb|ACX50756.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780422|gb|ACX50757.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780424|gb|ACX50758.1| AT1G03560-like protein [Capsella bursa-pastoris]
          Length = 199

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 76/146 (52%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+G  +E   +F  +  KG  P+V  +T +I+ YA +G  ++A+R+  RM+  G  P
Sbjct: 26  GLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKP 85

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY+V++ GL      N ++  +A  Y       G+  N+  Y+++ +   +A ++DE
Sbjct: 86  DVVTYSVVVNGLCK----NGRV-EEALDYFQTCRFNGLAINSMFYSSLIDGLGKAGRIDE 140

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      ALID
Sbjct: 141 AERLFEEMSEKGCTRDSYCYN-ALID 165



 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 72/134 (53%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ D+G  PDVV ++ V+      G+ +EAL  F     +G
Sbjct: 58  LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNG 117

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +A N+  Y+ LI GL     G A  + +A++   EM  KG   ++  Y A+ +A  +  K
Sbjct: 118 LAINSMFYSSLIDGL-----GKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGK 172

Query: 213 VDEARGLLQQMKAK 226
           VDEA  L ++M+ +
Sbjct: 173 VDEAMTLFKRMEEE 186



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 6/143 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
            + L+ ++ +KG        + VI      G+  E   VF  M+  G  PN   Y VLI 
Sbjct: 1   CVALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLID 60

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G A +       + DA + L  M+ +G +P+  TY+ V     +  +V+EA    Q  + 
Sbjct: 61  GYAKSGS-----VEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRF 115

Query: 226 KGFVPDEKAVKEALIDKRGQGFR 248
            G   +      +LID  G+  R
Sbjct: 116 NGLAIN-SMFYSSLIDGLGKAGR 137


>gi|218199303|gb|EEC81730.1| hypothetical protein OsI_25362 [Oryza sativa Indica Group]
          Length = 583

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 90/184 (48%), Gaps = 10/184 (5%)

Query: 50  KSKLPPPYDPFKKVVDEEPT--DPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTH 104
           ++K PP    +  ++          N + IF  M  EG+  N V    +  A +  G+  
Sbjct: 181 RTKCPPDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHR 240

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EAL +F  IK  G  PD+V++T+++ AY  + Q ++A  VF +M  +   PN  +Y  LI
Sbjct: 241 EALAIFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALI 300

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
                 A G+A +L +A   L EM   G++P+  + + +  A  R +++     +L+  +
Sbjct: 301 D-----AYGSAGMLKEAVGLLHEMEKDGIQPDVVSISTLLAACGRCRQITRIETILEAAR 355

Query: 225 AKGF 228
           ++G 
Sbjct: 356 SRGI 359



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 93/192 (48%), Gaps = 26/192 (13%)

Query: 69  TDPRNLQEIFHKMRTEGLTNNAVKMFDALSK-------DGLTHEALQ----LFAQIKD-- 115
           +D   L  I H +   G    A+++F+++ +       D +T+ ++     ++ Q+++  
Sbjct: 149 SDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTYTSIMHSYCIYGQVENCK 208

Query: 116 --------KGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
                   +G  P++VA+ +++ AYAS G  +EAL +F  +  +G+ P+  +Y  L+   
Sbjct: 209 AIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDIVSYTSLLNAY 268

Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
             +A         A++   +M     +PN  +Y A+ +A+  A  + EA GLL +M+  G
Sbjct: 269 GRSAQPE-----KAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEMEKDG 323

Query: 228 FVPDEKAVKEAL 239
             PD  ++   L
Sbjct: 324 IQPDVVSISTLL 335



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 66/146 (45%), Gaps = 10/146 (6%)

Query: 88  NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMR 147
           NN +   +A    G   +AL+L  ++ + G  PD+V H  V+ A  +  Q  +A+  F  
Sbjct: 85  NNVI---NACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQYSKAISYFEI 141

Query: 148 MLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR--PNAGTYTAVFE 205
           M  + V  + +T  ++I  L           G+A +    M  +  +  P+  TYT++  
Sbjct: 142 MKGANVTSDTFTLNIIIHCLVKIGQ-----CGEAIELFNSMRERRTKCPPDVVTYTSIMH 196

Query: 206 AFVRAQKVDEARGLLQQMKAKGFVPD 231
           ++    +V+  + +   M A+G  P+
Sbjct: 197 SYCIYGQVENCKAIFDLMVAEGVKPN 222



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 55/134 (41%), Gaps = 38/134 (28%)

Query: 71  PRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVV---- 123
           P   +E+F+KM+      N V    + DA    G+  EA+ L  +++  G  PDVV    
Sbjct: 274 PEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEMEKDGIQPDVVSIST 333

Query: 124 -------------------------------AHTAVIEAYASAGQGKEALRVFMRMLASG 152
                                          A+ + I++Y S G  ++AL ++  M  S 
Sbjct: 334 LLAACGRCRQITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDYEKALELYTSMRESN 393

Query: 153 VAPNAYTYAVLIKG 166
           V P+A TY +LI G
Sbjct: 394 VKPDAVTYNILISG 407



 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 5/127 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +A  LF ++++    PD   + ++I A++ AGQ + A+ +   ML + + P   TY  +I
Sbjct: 29  QARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMEDMLRAAIPPTRTTYNNVI 88

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
               AA  GN K    A +   +M   G+ P+  T+  V  A     +  +A    + MK
Sbjct: 89  NACGAA--GNWK---KALELCKKMTENGVGPDLVTHNIVLSALKNGAQYSKAISYFEIMK 143

Query: 225 AKGFVPD 231
                 D
Sbjct: 144 GANVTSD 150



 Score = 40.8 bits (94), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 30/134 (22%), Positives = 54/134 (40%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +  A S+ G    A+ +   +      P    +  VI A  +AG  K+AL +  +M  +G
Sbjct: 52  LIHAHSRAGQWRWAINIMEDMLRAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTENG 111

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V P+  T+ +++  L   A  +  I      Y   M G  +  +  T   +    V+  +
Sbjct: 112 VGPDLVTHNIVLSALKNGAQYSKAI-----SYFEIMKGANVTSDTFTLNIIIHCLVKIGQ 166

Query: 213 VDEARGLLQQMKAK 226
             EA  L   M+ +
Sbjct: 167 CGEAIELFNSMRER 180


>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like isoform 1 [Vitis vinifera]
          Length = 610

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 85/169 (50%), Gaps = 12/169 (7%)

Query: 76  EIFHKMRTEG-----LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           EI +++ ++G     +T N V   D LSK G T  A++L  +++ KG  PD++ +++++ 
Sbjct: 447 EILNQLSSKGCSPVLITYNTV--IDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVS 504

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
             +  G+  EA++ F  +   G+ PNA TY  ++ GL  +   +  I      +L  M+ 
Sbjct: 505 GLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAI-----DFLAYMIS 559

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
           K  +P   TYT + E         EA  LL ++ ++G V    A + A+
Sbjct: 560 KRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGLVKKSSAEQVAV 608



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 72/140 (51%), Gaps = 5/140 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +  AL KDG    A+++  Q+  KG  P ++ +  VI+  +  G+ + A+++   M   G
Sbjct: 432 LLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKG 491

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+  TY+ L+ GL+         + +A K+  ++ G G+RPNA TY ++     ++++
Sbjct: 492 LKPDIITYSSLVSGLSREGK-----VDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQ 546

Query: 213 VDEARGLLQQMKAKGFVPDE 232
            D A   L  M +K   P E
Sbjct: 547 TDRAIDFLAYMISKRCKPTE 566



 Score = 73.6 bits (179), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 76/159 (47%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++  +MR +G   + V    + + + K+G   EA++    +   G  P+V+ H  ++ + 
Sbjct: 272 KLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSM 331

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
            S G+  +A ++   ML  G +P+  T+ +LI  L         +LG A   L +M   G
Sbjct: 332 CSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQG-----LLGRAIDILEKMPMHG 386

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             PN+ +Y  +   F + +K+D A   L  M ++G  PD
Sbjct: 387 CTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPD 425



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 68/139 (48%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +A  K+    +A++L  ++++KG  PDVV +  +I      G+  EA++    M + G
Sbjct: 257 LIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYG 316

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN  T+ ++++ + +          DA+K L +M+ KG  P+  T+  +     R   
Sbjct: 317 CQPNVITHNIILRSMCSTGR-----WMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGL 371

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +  A  +L++M   G  P+
Sbjct: 372 LGRAIDILEKMPMHGCTPN 390



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 71/159 (44%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +I  KM   G T N++    +     K+     A++    +  +G  PD+V +  ++ A 
Sbjct: 377 DILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTAL 436

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+   A+ +  ++ + G +P   TY  +I GL+        I     K L EM  KG
Sbjct: 437 CKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAI-----KLLDEMRRKG 491

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           ++P+  TY+++     R  KVDEA      ++  G  P+
Sbjct: 492 LKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPN 530



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 5/138 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L   G   +A+++  +   K   PDV+ +T +IEA        +A+++   M   G
Sbjct: 222 ILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKG 281

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  TY VLI G+          L +A K+L  M   G +PN  T+  +  +     +
Sbjct: 282 SKPDVVTYNVLINGICKEGR-----LDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGR 336

Query: 213 VDEARGLLQQMKAKGFVP 230
             +A  LL  M  KG  P
Sbjct: 337 WMDAEKLLSDMLRKGCSP 354



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 73/162 (45%), Gaps = 27/162 (16%)

Query: 97  LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
           L ++G   +  +    +  +G +PD++  T++I  +   G+ K+A  V   +  SG  P+
Sbjct: 124 LVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPD 183

Query: 157 AYTYAVLIKGLAAAAD-GNA--------------------KILGDAQKY--LMEMVGKGM 193
             TY VLI G   + +  NA                    + L D+ K    ME++ + +
Sbjct: 184 VITYNVLISGYCKSGEIDNALQVLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQL 243

Query: 194 R----PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +    P+  TYT + EA  +   V +A  LL +M+ KG  PD
Sbjct: 244 QKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPD 285


>gi|449446442|ref|XP_004140980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 45/163 (27%), Positives = 84/163 (51%), Gaps = 8/163 (4%)

Query: 72  RNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           ++ +++   M  +G   N +    + D   K     EA ++F ++ + G+ P+V  ++++
Sbjct: 662 KDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVEHGYNPNVYTYSSL 721

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I+      +    L+V  +ML +  APN   Y  +I GL+  A  +     +A K ++ M
Sbjct: 722 IDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTD-----EAYKLMLMM 776

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             KG +PN  TYTA+ + F +A KVD+   L ++M +KG  P+
Sbjct: 777 EEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPN 819



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 51/170 (30%), Positives = 83/170 (48%), Gaps = 9/170 (5%)

Query: 75  QEIFHKMRTEGLTNNAVKMFD---ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           ++ +++M + G   N V +      L   G   +A ++  ++   G +PD   ++ VI  
Sbjct: 439 EKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVIGF 498

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
             +A + + A  +F  M  +GV P+ YTY +LI   + A      I+  A  +L EMV  
Sbjct: 499 LCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAG-----IIKQAHNWLDEMVRD 553

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           G  P   TYT +  A+++A+KV  A  L + M AKG  P+      ALID
Sbjct: 554 GCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPN-VITYTALID 602



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 56/179 (31%), Positives = 84/179 (46%), Gaps = 15/179 (8%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M+  G+  +      + D  SK G+  +A     ++   G  P VV +T +I AY 
Sbjct: 511 LFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYL 570

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKG------LAAAADGNAKILGDAQKYLME 187
            A +   A  +F  M+A G  PN  TY  LI G      +  A    A++ GDA    ++
Sbjct: 571 KAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVD 630

Query: 188 MVGK-----GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           M  K       +PN  TY A+ +   +A KV +AR LL+ M   G  P+   V +ALID
Sbjct: 631 MYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPN-TIVYDALID 688



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 50/158 (31%), Positives = 76/158 (48%), Gaps = 10/158 (6%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++  KM       N V   +M D LSK   T EA +L   +++KG  P+VV +TA+I+ +
Sbjct: 736 KVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGF 795

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             AG+  + L +F  M + G APN  TY VLI    A        L +A   L EM    
Sbjct: 796 GKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGH-----LDEAYALLEEMKQTY 850

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
              +  +Y  V E + R   +  + GLL++++  G  P
Sbjct: 851 WPKHVSSYCKVIEGYKREFIL--SLGLLEEVEKNGSAP 886



 Score = 63.2 bits (152), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 43/175 (24%), Positives = 75/175 (42%), Gaps = 24/175 (13%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDV---------- 122
           E+F  M  +G   N +    + D   K G   +A Q++A+++    +PDV          
Sbjct: 580 ELFELMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNV 639

Query: 123 ------VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK 176
                 V + A+++    A + K+A  +   M   G  PN   Y  LI G   AA     
Sbjct: 640 AEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAK---- 695

Query: 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            L +AQ+   +MV  G  PN  TY+++ +   + +++D    +L +M      P+
Sbjct: 696 -LDEAQEVFHKMVEHGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPN 749



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/159 (25%), Positives = 75/159 (47%), Gaps = 12/159 (7%)

Query: 70  DPRNLQEIFHKMRTE-GLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMPDVVAH 125
           D  +  ++ H+  +E GL+ +   +     AL K G   EAL L   I+ +  +P+ + +
Sbjct: 255 DKLDTAQLVHREMSELGLSMDEFTLGFFAQALCKVGKWREALSL---IEKEDFVPNTILY 311

Query: 126 TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185
             +I     A   +EA+    RM ++   PN  TY +L+ G       N K LG  ++ L
Sbjct: 312 NKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCL-----NKKQLGRCKRIL 366

Query: 186 MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
             M+ +G  P+   + ++  A+ ++     A  LL++M+
Sbjct: 367 SMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKME 405



 Score = 41.6 bits (96), Expect = 0.31,   Method: Composition-based stats.
 Identities = 47/187 (25%), Positives = 69/187 (36%), Gaps = 39/187 (20%)

Query: 81  MRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI-------- 129
           M  +G   N V    M D   K G   + L+LF ++  KG  P+ V +T +I        
Sbjct: 776 MEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGH 835

Query: 130 --EAYASAGQGKEAL----------------RVFMRMLA-------SGVAPNAYTYAVLI 164
             EAYA   + K+                  R F+  L        +G AP    Y VLI
Sbjct: 836 LDEAYALLEEMKQTYWPKHVSSYCKVIEGYKREFILSLGLLEEVEKNGSAPIILLYKVLI 895

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
                A  G  ++  +  K ++      M      YT++  +F  A K+  A  L   M 
Sbjct: 896 DNFVKA--GRLEVALELHKEVIS-ASMSMAAKKNLYTSLIYSFSYASKIGHAFELFYDMI 952

Query: 225 AKGFVPD 231
             G +PD
Sbjct: 953 RDGVIPD 959



 Score = 40.0 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 56/113 (49%), Gaps = 7/113 (6%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGV--APNAYTYAVL 163
           +L L  +++  G  P ++ +  +I+ +  AG+ + AL +   ++++ +  A     Y  L
Sbjct: 872 SLGLLEEVEKNGSAPIILLYKVLIDNFVKAGRLEVALELHKEVISASMSMAAKKNLYTSL 931

Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
           I   + A+      +G A +   +M+  G+ P+ GT+  +    +R ++ +EA
Sbjct: 932 IYSFSYASK-----IGHAFELFYDMIRDGVIPDLGTFVHLLMGLIRVRRWEEA 979



 Score = 39.3 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 58/133 (43%), Gaps = 8/133 (6%)

Query: 99  KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAY 158
           ++GL + AL+   ++KD G+ P  + + A+++ +  A +   A  V   M   G++ + +
Sbjct: 218 RNGLWNVALEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLVHREMSELGLSMDEF 277

Query: 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218
           T     + L          +G  ++ L  +  +   PN   Y  +      A   +EA  
Sbjct: 278 TLGFFAQALCK--------VGKWREALSLIEKEDFVPNTILYNKMISGLCEASFFEEAMD 329

Query: 219 LLQQMKAKGFVPD 231
            L +M++   +P+
Sbjct: 330 FLNRMRSTSCIPN 342


>gi|357512639|ref|XP_003626608.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240852|gb|ABD32710.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355501623|gb|AES82826.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 451

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 75/150 (50%), Gaps = 8/150 (5%)

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F  M  +G   ++     + ++L +     EA +L  ++K KG  PD+V +  VI  +
Sbjct: 238 DLFEDMLNKGFVPDSFTYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVILGF 297

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+  +A +V   M A+G  PN  +Y  L+ GL         +L +A KY+ EM+ KG
Sbjct: 298 CREGRAHDACKVIDDMQANGCLPNLVSYRTLVNGLCHLG-----MLDEATKYVEEMLSKG 352

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
             P+     A+ + F    +++EA G+L +
Sbjct: 353 FSPHFAVIHALVKGFCNVGRIEEACGVLTK 382



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 72/165 (43%), Gaps = 6/165 (3%)

Query: 68  PTDPRNLQEIFHKMRTEGLTNNAVKMFDAL-SKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           P    N   I  +   + LT +  ++ D L S       A  LF      G  PD  ++ 
Sbjct: 127 PDKALNTFYIMLQFNIKPLTKHLNRILDILVSHRNYLRPAFDLFKDAHKHGVFPDTKSYN 186

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
            ++ A+   G    A  +F +M    V P+  +Y +L++ L   +  N      A     
Sbjct: 187 ILMRAFCLNGDISIAYTLFNKMFKRDVVPDIQSYRILMQALCRKSQVNG-----AVDLFE 241

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +M+ KG  P++ TYT +  +  R +K+ EA  LL +MK KG  PD
Sbjct: 242 DMLNKGFVPDSFTYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPD 286



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 10/158 (6%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +  AL +    + A+ LF  + +KG +PD   +T ++ +     + +EA ++  RM   G
Sbjct: 223 LMQALCRKSQVNGAVDLFEDMLNKGFVPDSFTYTTLLNSLCRKKKLREAYKLLCRMKVKG 282

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+   Y  +I G     +G A    DA K + +M   G  PN  +Y  +         
Sbjct: 283 CNPDIVHYNTVILGF--CREGRAH---DACKVIDDMQANGCLPNLVSYRTLVNGLCHLGM 337

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGV 250
           +DEA   +++M +KGF P   AV  AL+    +GF  V
Sbjct: 338 LDEATKYVEEMLSKGFSP-HFAVIHALV----KGFCNV 370



 Score = 38.5 bits (88), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 5/127 (3%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++   M+  G   N V    + + L   G+  EA +   ++  KG  P      A+++ +
Sbjct: 308 KVIDDMQANGCLPNLVSYRTLVNGLCHLGMLDEATKYVEEMLSKGFSPHFAVIHALVKGF 367

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL-MEMVGK 191
            + G+ +EA  V  + L    AP+  T+ +++  +    DG  KI G  ++ L +E+ G 
Sbjct: 368 CNVGRIEEACGVLTKSLEHREAPHKDTWMIIVPQICEVDDG-VKIDGVLEEVLKIEIKGD 426

Query: 192 GMRPNAG 198
               +AG
Sbjct: 427 TRIVDAG 433


>gi|341605695|gb|AEK82950.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 76/146 (52%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+G  +E   +F  +  KG  P+V  +T +I+ YA +G  ++A+R+  RM+  G  P
Sbjct: 26  GLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKP 85

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY+V++ GL      N ++  +A  Y       G+  N+  Y+++ +   +A ++DE
Sbjct: 86  DVVTYSVVVNGLCK----NGRV-EEALDYFQTCQFNGLAINSMFYSSLIDGLGKAGRIDE 140

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      ALID
Sbjct: 141 AERLFEEMSEKGCTRDSYCYN-ALID 165



 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 72/134 (53%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ D+G  PDVV ++ V+      G+ +EAL  F     +G
Sbjct: 58  LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCQFNG 117

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +A N+  Y+ LI GL     G A  + +A++   EM  KG   ++  Y A+ +A  +  K
Sbjct: 118 LAINSMFYSSLIDGL-----GKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGK 172

Query: 213 VDEARGLLQQMKAK 226
           VDEA  L ++M+ +
Sbjct: 173 VDEAMMLFKRMEEE 186



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 6/143 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
            + L+ ++ +KG        + VI      G+  E   VF  M+  G  PN   Y VLI 
Sbjct: 1   CVALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLID 60

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G A +       + DA + L  M+ +G +P+  TY+ V     +  +V+EA    Q  + 
Sbjct: 61  GYAKSGS-----VEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCQF 115

Query: 226 KGFVPDEKAVKEALIDKRGQGFR 248
            G   +      +LID  G+  R
Sbjct: 116 NGLAIN-SMFYSSLIDGLGKAGR 137


>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
 gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
          Length = 614

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 84/172 (48%), Gaps = 15/172 (8%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDK-GH------M 119
           +P   QE+F  M++   + + V    + D L + G    A+ LF ++ D+  H       
Sbjct: 129 EPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCS 188

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
           P+V+ ++ +I+    A +  +A+ +   M A G +P+  TY +L+ GL   +   A    
Sbjct: 189 PNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAA---- 244

Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            A + L EM+  G  PN  TY ++     RA++V +A  L++ M  +G  P+
Sbjct: 245 -AWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPN 295



 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K     +A++L   +K +G  PDV+ +T +++      +   A  V   ML +G
Sbjct: 197 LIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAG 256

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN  TY  L+ GL       A+ + DA   + +M  +G  PN  TY  + +   +  +
Sbjct: 257 CVPNLVTYNSLLHGLC-----RARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGR 311

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V +A  +L  M  KG  PD
Sbjct: 312 VKDACAMLADMIDKGGTPD 330



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +   M   G T N V    + D L K G   +A  + A + DKG  PD++ +  +I    
Sbjct: 283 LMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLC 342

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            A Q  E++ +  R ++ G+ P+  TY+ +I GL       +  L +A + L+ +  +G 
Sbjct: 343 KADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLC-----RSNRLDEACRLLLYVKSRGC 397

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            P+   Y+ + +   +A KVDEA  L + M   G   D
Sbjct: 398 PPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDAD 435



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 65/134 (48%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K G   EA  L+  +   G   DVV ++ +I+    AG+  EA  +  RM+  G
Sbjct: 407 LIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMG 466

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  TY  LIKGL      +   L +A + + EM      P+A TY  +     R ++
Sbjct: 467 TPPSTMTYNSLIKGLC-----DLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMER 521

Query: 213 VDEARGLLQQMKAK 226
           VD A  LL+Q KA+
Sbjct: 522 VDSAVVLLEQAKAR 535



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 73/159 (45%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+  +M   G   N V    +   L +     +AL L   +  +G  P+VV +  +I+  
Sbjct: 247 EVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGL 306

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+ K+A  +   M+  G  P+   Y +LI GL  A   +  I       L   V  G
Sbjct: 307 CKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESI-----ALLRRAVSGG 361

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           ++P+  TY++V     R+ ++DEA  LL  +K++G  PD
Sbjct: 362 IKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPD 400



 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 5/134 (3%)

Query: 97  LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
           L +     EA +L   +K +G  PDV+ ++ +I+    AG+  EA  ++  M   G   +
Sbjct: 376 LCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDAD 435

Query: 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
             TY+ LI GL  A       + +A   L  MV  G  P+  TY ++ +       +DEA
Sbjct: 436 VVTYSTLIDGLCKAGR-----VDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEA 490

Query: 217 RGLLQQMKAKGFVP 230
             L+++M+     P
Sbjct: 491 IELVEEMERSNCAP 504



 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 5/138 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +     + G   +A + F +++ K  +P+V   + +I+    A +  +ALR F  M  SG
Sbjct: 15  LLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDALRCFRAMQGSG 74

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +  +   Y  L+ GL        K L  A   L EM   G  PN  TY ++ +   +  +
Sbjct: 75  IVADTVIYTALLSGL-----WKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCKNNE 129

Query: 213 VDEARGLLQQMKAKGFVP 230
            D A+ L + MK+    P
Sbjct: 130 PDRAQELFEHMKSVECSP 147



 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 77/197 (39%), Gaps = 40/197 (20%)

Query: 75  QEIFHKMRTEGLTNN---AVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           Q  F +MR++ L  N      + D L K   + +AL+ F  ++  G + D V +TA++  
Sbjct: 29  QRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDALRCFRAMQGSGIVADTVIYTALLSG 88

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA----------------------- 168
                +  +AL +   M   G  PN  TY  LI GL                        
Sbjct: 89  LWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPS 148

Query: 169 -----AAADGNAKI--LGDAQKYLMEMVGK-------GMRPNAGTYTAVFEAFVRAQKVD 214
                   DG  +   L  A     EM+ +          PN  TY+ + +   +A +V 
Sbjct: 149 MVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVS 208

Query: 215 EARGLLQQMKAKGFVPD 231
           +A  LL+ MKA+G  PD
Sbjct: 209 QAVELLESMKARGCSPD 225



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 5/112 (4%)

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
           PDV  + A++  +   G+  +A R F  M +  + PN +  ++LI GL       AK   
Sbjct: 7   PDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLC-----KAKRSI 61

Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           DA +    M G G+  +   YTA+     + +++D+A  +L +M+  G  P+
Sbjct: 62  DALRCFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPN 113



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/241 (22%), Positives = 93/241 (38%), Gaps = 54/241 (22%)

Query: 36  SSSSDQPTKKYVNTKSK-LPPPYDPFKKVVD--------EEPTDPRNLQEIFHKMRTEGL 86
           S+  D+  +  +  KS+  PP    +  ++D        +E  D      ++  M  +G 
Sbjct: 379 SNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFD------LYEVMAGDGC 432

Query: 87  TNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALR 143
             + V    + D L K G   EA  L A++   G  P  + + ++I+         EA+ 
Sbjct: 433 DADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIE 492

Query: 144 VFMRMLASGVAPNAYTYAVLIKGLA---------------------------------AA 170
           +   M  S  AP+A TY +LI G+                                  + 
Sbjct: 493 LVEEMERSNCAPSAVTYNILIHGMCRMERVDSAVVLLEQAKARCVAAGGTALDTIAYSSL 552

Query: 171 ADGNAKI--LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGL-LQQMKAKG 227
            DG  K   + +A  Y  EM+  G+ P+  TY+ + E   +++ + E R L L QM   G
Sbjct: 553 IDGLCKAGRVAEALDYFQEMIDNGVIPDHITYSILLEGLKKSKDLHELRHLVLDQMVQLG 612

Query: 228 F 228
           +
Sbjct: 613 Y 613


>gi|410109945|gb|AFV61052.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rubella]
          Length = 394

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 111/237 (46%), Gaps = 15/237 (6%)

Query: 2   AATAILRWLLHSPSPKRS-LRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPF 60
           +A+A+   +L +   +RS + + +  + A L+      + +  +  +  + K   P+D  
Sbjct: 35  SASAVFAVILETKGTQRSDIYVFSGLITAYLESGFLRDAIECYR--LTREHKFWVPFDTC 92

Query: 61  KKVVDEEPTDPRNLQEI--FHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIK 114
           +KV+ E     +  + +  F+K   E     ++  F+ L     K+     A  +F  I 
Sbjct: 93  RKVL-EHLMKLKYFKLVWGFYKEILESGYPASLYFFNILMHRFCKERDIRVAQSVFDAIT 151

Query: 115 DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174
             G  P VV++  ++  Y   G   E  R+   M ASGV P+ YTY+VLI GL   +   
Sbjct: 152 KWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESK-- 209

Query: 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              + DA +   EM+ KG+ PN  T+T + +   +  +VD A  + +QM ++  +PD
Sbjct: 210 ---MDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLALEIYKQMLSQSLLPD 263



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 86/192 (44%), Gaps = 12/192 (6%)

Query: 63  VVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM 119
           +  E   D  N  E+F +M  +GL  N V    + D   K+G    AL+++ Q+  +  +
Sbjct: 204 LCKESKMDDAN--ELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLALEIYKQMLSQSLL 261

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
           PD++ +  +I      G  K+A  +   M   G+ P+  TY  LI G     D     L 
Sbjct: 262 PDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTALIDGCCKEGD-----LD 316

Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
            A ++   M+ + +R +   YTA+     +  +  +A  +L++M + G  PD +     +
Sbjct: 317 TAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMII 376

Query: 240 --IDKRGQGFRG 249
               K+G  ++G
Sbjct: 377 NEFCKKGDVWKG 388


>gi|255582955|ref|XP_002532248.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528066|gb|EEF30142.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 521

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 98/214 (45%), Gaps = 13/214 (6%)

Query: 17  KRSLRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKKVVDEEPT--DPRNL 74
           K SL+  +T +N  L  S      Q    YVN   K+ P    F  +V       D  + 
Sbjct: 160 KPSLKAISTCLN-ILVESKQIDLAQKCLLYVNEHLKVRPNTCIFNILVKHHCKSGDLESA 218

Query: 75  QEIFHKMRTEGLTNNAV----KMFDALSKDGLTHEALQLFAQIKDKGH-MPDVVAHTAVI 129
            E+ H+M+    +   V     + D L  +G   EA++LF ++  K   +PD + ++ +I
Sbjct: 219 LEVMHEMKKSRRSYPNVITYSTLIDGLCGNGRLKEAIELFEEMVSKDQILPDALTYSVLI 278

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
           + +   G+   A ++   M ++G  PN + Y+VL+ G           L +A++   EM 
Sbjct: 279 KGFCHGGKADRARKIMEFMRSNGCDPNVFNYSVLMNGFCKEGR-----LEEAKEVFDEMK 333

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
             G++P+   YT +   F    ++DEA  LL++M
Sbjct: 334 SSGLKPDTVGYTTLINCFCGVGRIDEAMELLKEM 367



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 8/169 (4%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           ++I   MR+ G   N      + +   K+G   EA ++F ++K  G  PD V +T +I  
Sbjct: 291 RKIMEFMRSNGCDPNVFNYSVLMNGFCKEGRLEEAKEVFDEMKSSGLKPDTVGYTTLINC 350

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +   G+  EA+ +   M       +A T+ VL+KGL            +A + L  +  +
Sbjct: 351 FCGVGRIDEAMELLKEMTEMKCKADAVTFNVLLKGLCREGR-----FDEALRMLENLAYE 405

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
           G+  N G+Y  V     +  +++++  LL  M ++GFVP      E L+
Sbjct: 406 GVYLNKGSYRIVLNFLCQKGELEKSCALLGLMLSRGFVPHYATSNELLV 454



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 70/136 (51%), Gaps = 7/136 (5%)

Query: 98  SKDGLTHEALQLFAQIK-DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG-VAP 155
            K G    AL++  ++K  +   P+V+ ++ +I+     G+ KEA+ +F  M++   + P
Sbjct: 210 CKSGDLESALEVMHEMKKSRRSYPNVITYSTLIDGLCGNGRLKEAIELFEEMVSKDQILP 269

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +A TY+VLIKG       +      A+K +  M   G  PN   Y+ +   F +  +++E
Sbjct: 270 DALTYSVLIKGFCHGGKADR-----ARKIMEFMRSNGCDPNVFNYSVLMNGFCKEGRLEE 324

Query: 216 ARGLLQQMKAKGFVPD 231
           A+ +  +MK+ G  PD
Sbjct: 325 AKEVFDEMKSSGLKPD 340


>gi|399107190|gb|AFP20359.1| At1g03560-like protein, partial [Capsella grandiflora]
          Length = 212

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 76/146 (52%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+G  +E   +F  +  KG  P+V  +T +I+ YA +G  ++A+R+  RM+  G  P
Sbjct: 28  GLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKP 87

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY+V++ GL      N ++  +A  Y       G+  N+  Y+++ +   +A ++DE
Sbjct: 88  DVVTYSVVVNGLCK----NGRV-EEALDYFQTCRFNGLAINSIFYSSLIDGLGKAGRIDE 142

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      ALID
Sbjct: 143 AERLFEEMSEKGCTRDSYCYN-ALID 167



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 72/134 (53%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ D+G  PDVV ++ V+      G+ +EAL  F     +G
Sbjct: 60  LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNG 119

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +A N+  Y+ LI GL     G A  + +A++   EM  KG   ++  Y A+ +A  +  K
Sbjct: 120 LAINSIFYSSLIDGL-----GKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGK 174

Query: 213 VDEARGLLQQMKAK 226
           VDEA  L ++M+ +
Sbjct: 175 VDEAMTLFKRMEEE 188



 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 6/143 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
            + L+ ++ +KG        + VI      G+  E   VF  M+  G  PN   Y VLI 
Sbjct: 3   CVALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLID 62

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G A +       + DA + L  M+ +G +P+  TY+ V     +  +V+EA    Q  + 
Sbjct: 63  GYAKSGS-----VEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRF 117

Query: 226 KGFVPDEKAVKEALIDKRGQGFR 248
            G   +      +LID  G+  R
Sbjct: 118 NGLAIN-SIFYSSLIDGLGKAGR 139


>gi|384247929|gb|EIE21414.1| TPR-like protein [Coccomyxa subellipsoidea C-169]
          Length = 448

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 85/174 (48%), Gaps = 9/174 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +++ ++  EG T N V    + D   K G   EA+Q+   ++D+G  P+V  +  ++ A 
Sbjct: 129 DVYGQLLREGCTPNLVTYNILIDIHGKMGNWQEAVQVLDALEDQGTKPEVRTYNTILSAC 188

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             +GQ + ALRV+ RMLA G  P A TY  LI     +A G    + +A +   +MV +G
Sbjct: 189 NRSGQPEHALRVYERMLADGAQPTATTYTALI-----SAYGKTGKIEEALRIFQDMVRRG 243

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
              N  TY+++  A  +A +   A  LL +M      P+      AL+    QG
Sbjct: 244 CERNVITYSSLISACEKAGRWQLALELLDEMHRDNCKPNTVTFN-ALLSACAQG 296



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 65/137 (47%), Gaps = 8/137 (5%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           IF  M   G   N +    +  A  K G    AL+L  ++      P+ V   A++ A A
Sbjct: 235 IFQDMVRRGCERNVITYSSLISACEKAGRWQLALELLDEMHRDNCKPNTVTFNALLSACA 294

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             GQ K A  VF +M + G  P+A +YA+LI   +A   GN      A + L EM G+G 
Sbjct: 295 QGGQWKAAQDVFEQMPSCGCKPDAVSYAILI---SAFDRGNQWC--RALQALDEMQGQGH 349

Query: 194 RPNAGTYTAVFEAFVRA 210
           RP+ G Y  V EA  R+
Sbjct: 350 RPDVGVYNVVIEALTRS 366



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 83/200 (41%), Gaps = 16/200 (8%)

Query: 35  LSSSSDQPTKKYVNTKSKLPPPYDPFKKVVDEEPTDPRNLQEIFHKMRTEGLTNNAVK-- 92
           L +  DQ TK  V T       Y+      +     P +   ++ +M  +G    A    
Sbjct: 166 LDALEDQGTKPEVRT-------YNTILSACNRS-GQPEHALRVYERMLADGAQPTATTYT 217

Query: 93  -MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
            +  A  K G   EAL++F  +  +G   +V+ ++++I A   AG+ + AL +   M   
Sbjct: 218 ALISAYGKTGKIEEALRIFQDMVRRGCERNVITYSSLISACEKAGRWQLALELLDEMHRD 277

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
              PN  T+  L+   A      A     AQ    +M   G +P+A +Y  +  AF R  
Sbjct: 278 NCKPNTVTFNALLSACAQGGQWKA-----AQDVFEQMPSCGCKPDAVSYAILISAFDRGN 332

Query: 212 KVDEARGLLQQMKAKGFVPD 231
           +   A   L +M+ +G  PD
Sbjct: 333 QWCRALQALDEMQGQGHRPD 352



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 86/213 (40%), Gaps = 55/213 (25%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHE------------------------ 105
           D R L  +  ++   GL+N A ++FD L      HE                        
Sbjct: 31  DSRALAALLKELHKVGLSNRASELFDWLRSLPDNHELAHLCDVYTYTTIISQCGSHQQLR 90

Query: 106 -ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
            AL+L A+++  G + +V  ++A++     A + + AL V+ ++L  G  PN  TY +LI
Sbjct: 91  KALELVAEMRGHGVVCNVHTYSALMNVCIKANELELALDVYGQLLREGCTPNLVTYNILI 150

Query: 165 -------------KGLAAAADGNAK--------ILG---------DAQKYLMEMVGKGMR 194
                        + L A  D   K        IL           A +    M+  G +
Sbjct: 151 DIHGKMGNWQEAVQVLDALEDQGTKPEVRTYNTILSACNRSGQPEHALRVYERMLADGAQ 210

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
           P A TYTA+  A+ +  K++EA  + Q M  +G
Sbjct: 211 PTATTYTALISAYGKTGKIEEALRIFQDMVRRG 243


>gi|341605691|gb|AEK82948.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605825|gb|AEK83015.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 76/146 (52%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+G  +E   +F  +  KG  P+V  +T +I+ YA +G  ++A+R+  RM+  G  P
Sbjct: 26  GLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKP 85

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY+V++ GL      N ++  +A  Y       G+  N+  Y+++ +   +A ++DE
Sbjct: 86  DVVTYSVVVNGLCK----NGRV-EEALDYFQTCRFNGLAINSMFYSSLIDGLGKAGRIDE 140

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      ALID
Sbjct: 141 AERLFEEMSEKGCTRDSYCYN-ALID 165



 Score = 73.9 bits (180), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 72/134 (53%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ D+G  PDVV ++ V+      G+ +EAL  F     +G
Sbjct: 58  LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNG 117

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +A N+  Y+ LI GL     G A  + +A++   EM  KG   ++  Y A+ +A  +  K
Sbjct: 118 LAINSMFYSSLIDGL-----GKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGK 172

Query: 213 VDEARGLLQQMKAK 226
           VDEA  L ++M+ +
Sbjct: 173 VDEAMXLFKRMEEE 186



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 6/143 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
            + L+ ++ +KG        + VI      G+  E   VF  M+  G  PN   Y VLI 
Sbjct: 1   CVALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLID 60

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G A +       + DA + L  M+ +G +P+  TY+ V     +  +V+EA    Q  + 
Sbjct: 61  GYAKSGS-----VEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRF 115

Query: 226 KGFVPDEKAVKEALIDKRGQGFR 248
            G   +      +LID  G+  R
Sbjct: 116 NGLAIN-SMFYSSLIDGLGKAGR 137


>gi|255660824|gb|ACU25581.1| pentatricopeptide repeat-containing protein [Mulguraea aspera]
          Length = 418

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 109/237 (45%), Gaps = 15/237 (6%)

Query: 2   AATAILRWLLHSPSPKRS-LRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPF 60
           +A+A+   +L +   +RS   + +  + A L+      + +  +  +  + K   P+D  
Sbjct: 47  SASAVFAAILETKGTQRSDXYVFSGLITAYLESGFLRDAIECYR--LTKEHKFRVPFDTC 104

Query: 61  KKVVDEEPTDPRNLQEI--FHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIK 114
           +KV+ E     +  + +  F++   E     ++  F+ L     K+G    A  +F  I 
Sbjct: 105 RKVI-EHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHXFCKEGEIRLAQSVFDSIT 163

Query: 115 DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174
             G  P VV+   ++  Y   G   E  R+   M ASGV P+ YTY+VLI GL   +   
Sbjct: 164 KWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVHPDVYTYSVLINGLCKESK-- 221

Query: 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              + DA +   EM+  G+ PN  T+T + +   +  +VD A  + +QM ++  +PD
Sbjct: 222 ---MDDANELFDEMLBNGLVPNXVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPD 275



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 83/202 (41%), Gaps = 35/202 (17%)

Query: 63  VVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM 119
           +  E   D  N  E+F +M   GL  N V    + D   K+G    A++++ Q+  +  +
Sbjct: 216 LCKESKMDDAN--ELFDEMLBNGLVPNXVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLL 273

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD------- 172
           PD++ +  +I      G  K+A  +   M   G+ P+  TY  LI G     D       
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGXCKEGDLETAFEY 333

Query: 173 ---------------GNAKILG--------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
                            A I G        DA+K L EM+  G++P  GTYT +     +
Sbjct: 334 RKRMIKENIRXDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEXCK 393

Query: 210 AQKVDEARGLLQQMKAKGFVPD 231
              V     LL++M+  G+VP+
Sbjct: 394 KGDVWTGSKLLKEMQRXGYVPN 415



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 76/158 (48%), Gaps = 6/158 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K+    +A +LF ++ B G +P+ V  T +I+ +   G+   A+ ++ +ML+  
Sbjct: 212 LINGLCKESKMDDANELFDEMLBNGLVPNXVTFTTLIDGHCKNGRVDLAMEIYRQMLSQS 271

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+  TY  LI GL    D     L  A   + EM  KG++P+  TYT + +   +   
Sbjct: 272 LLPDLITYNTLIYGLCKKGD-----LKQAHDLIDEMSMKGLKPDKITYTTLIDGXCKEGD 326

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGV 250
           ++ A    ++M  +    D+ A   ALI    Q  R V
Sbjct: 327 LETAFEYRKRMIKENIRXDDVAYT-ALISGLCQEGRSV 363


>gi|297831416|ref|XP_002883590.1| hypothetical protein ARALYDRAFT_899142 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297329430|gb|EFH59849.1| hypothetical protein ARALYDRAFT_899142 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 379

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 61/128 (47%), Gaps = 5/128 (3%)

Query: 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
           H    L  Q+K  G +PD      +I+AYA   +  EA+RV+  M   G  PNAYTY+ L
Sbjct: 205 HAVRSLTKQMKSSGVIPDTFVLNMIIKAYAKCLEVDEAIRVYKEMALYGSEPNAYTYSYL 264

Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           IKG+          LG    +  EM  KGM PN   Y  +  +    ++++EA  ++  M
Sbjct: 265 IKGVCEKGR-----LGQGLGFYKEMRSKGMVPNGSCYMVLICSLSMERRLNEAVEVVYDM 319

Query: 224 KAKGFVPD 231
            A    PD
Sbjct: 320 LANSLSPD 327


>gi|255660918|gb|ACU25628.1| pentatricopeptide repeat-containing protein [Xeroaloysia
           ovatifolia]
          Length = 484

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 12/168 (7%)

Query: 78  FHKMRTEGL-----TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           F+KM +EG+     T N   M       G    A + F  +K +   PDV+ +  +I  Y
Sbjct: 138 FNKMLSEGIEPTRHTFNV--MIWGFFLSGKVETANRFFDDMKSREISPDVITYNTMINGY 195

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               +  EA + F+ M    + P   TY  LIKG  +        + DA + + EM G G
Sbjct: 196 YRVKKMDEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQ-----VDDALRLVEEMKGYG 250

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
           ++PNA TY+ +      A+K+ EAR +L++M  K   P + ++   LI
Sbjct: 251 IKPNAITYSTLLPGLCNAEKMSEARSVLKEMVDKYIAPTDNSIFMRLI 298



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 80/171 (46%), Gaps = 30/171 (17%)

Query: 91  VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           V M D+  K G+  E+++LF ++++ G      ++  + +     G+   A R F +ML+
Sbjct: 84  VLMIDSYGKAGIVQESVKLFQKMEELGVERTTKSYDTLFKVILRRGRFMMAKRYFNKMLS 143

Query: 151 SGVAPNAYTYAVLIKGLAAAA----------------------------DGNAKI--LGD 180
            G+ P  +T+ V+I G   +                             +G  ++  + +
Sbjct: 144 EGIEPTRHTFNVMIWGFFLSGKVETANRFFDDMKSREISPDVITYNTMINGYYRVKKMDE 203

Query: 181 AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           A+KY +EM G+ + P   TYT + + +V   +VD+A  L+++MK  G  P+
Sbjct: 204 AEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGYGIKPN 254



 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 64/123 (52%), Gaps = 12/123 (9%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA + F ++K +   P VV +T +I+ Y S  Q  +ALR+   M   G+ PNA TY+ L+
Sbjct: 203 EAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGYGIKPNAITYSTLL 262

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ----KVDEARGLL 220
            GL      NA+ + +A+  L EMV K + P   T  ++F   +  Q     +D A  +L
Sbjct: 263 PGLC-----NAEKMSEARSVLKEMVDKYIAP---TDNSIFMRLISGQCKTGNLDAAADVL 314

Query: 221 QQM 223
           + M
Sbjct: 315 KAM 317


>gi|83744090|gb|ABC42331.1| PPR protein [Oryza sativa Indica Group]
          Length = 506

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 79/161 (49%), Gaps = 10/161 (6%)

Query: 76  EIFHKMRTEG--LTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           E+ H M  +G     N V    + D L K G   +A   + ++ D+  +P+VV ++++I 
Sbjct: 182 ELLHMMADDGGGCLPNVVSYSTVTDGLLKGGDPDKAYATYREMLDRRILPNVVTYSSIIA 241

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
           A        +A+ V  RM+ +GV PN +TY  L+ G  ++       L +A K+L +M  
Sbjct: 242 ALCKGQAMDKAMEVHDRMVKNGVTPNCFTYTSLVHGFCSSGQ-----LTEAIKFLEKMCS 296

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            G+ PN  TY++  +   +  +  EAR +   M  +G  PD
Sbjct: 297 NGVEPNVVTYSSFMDYLCKNGRCTEARKIFYSMVKRGLKPD 337



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 76/159 (47%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +   KM + G+  N V      D L K+G   EA ++F  +  +G  PD+  +++++  Y
Sbjct: 289 KFLEKMCSNGVEPNVVTYSSFMDYLCKNGRCTEARKIFYSMVKRGLKPDITTYSSLLHGY 348

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           A  G   E   +F  M+ S + P+ Y +  LI   A+A  G      +A     +M  +G
Sbjct: 349 AIEGALVEMHGLFDLMVQSDMQPDHYVFNTLI--YASAKQGKVD---EAMLVFSKMRHQG 403

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           ++PN  TY  +   + +  +++ A  L Q+M + G  P+
Sbjct: 404 LKPNCVTYNTLINGYCKITRMENALALFQEMVSNGVSPN 442



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 79/180 (43%), Gaps = 8/180 (4%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           DP      + +M    +  N V    +  AL K     +A+++  ++   G  P+   +T
Sbjct: 213 DPDKAYATYREMLDRRILPNVVTYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPNCFTYT 272

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
           +++  + S+GQ  EA++   +M ++GV PN  TY+  +  L      N +   +A+K   
Sbjct: 273 SLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCK----NGRCT-EARKIFY 327

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
            MV +G++P+  TY+++   +     + E  GL   M      PD       +     QG
Sbjct: 328 SMVKRGLKPDITTYSSLLHGYAIEGALVEMHGLFDLMVQSDMQPDHYVFNTLIYASAKQG 387



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 71/159 (44%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+  +M   G+T N      +       G   EA++   ++   G  P+VV +++ ++  
Sbjct: 254 EVHDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYL 313

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+  EA ++F  M+  G+ P+  TY+ L+ G A         L +       MV   
Sbjct: 314 CKNGRCTEARKIFYSMVKRGLKPDITTYSSLLHGYAIEG-----ALVEMHGLFDLMVQSD 368

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           M+P+   +  +  A  +  KVDEA  +  +M+ +G  P+
Sbjct: 369 MQPDHYVFNTLIYASAKQGKVDEAMLVFSKMRHQGLKPN 407



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 66/142 (46%), Gaps = 8/142 (5%)

Query: 93  MFDALSKDGLTHEALQLFAQ-IKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRML-- 149
           +   L  D  T +A+ +  + + + G +P+V +HT +++      + +EAL +   M   
Sbjct: 131 LLKGLCADKRTDDAMDIVLRGMTELGCVPNVFSHTIILKGLCHENRSQEALELLHMMADD 190

Query: 150 ASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
             G  PN  +Y+ +  GL    D +      A     EM+ + + PN  TY+++  A  +
Sbjct: 191 GGGCLPNVVSYSTVTDGLLKGGDPDK-----AYATYREMLDRRILPNVVTYSSIIAALCK 245

Query: 210 AQKVDEARGLLQQMKAKGFVPD 231
            Q +D+A  +  +M   G  P+
Sbjct: 246 GQAMDKAMEVHDRMVKNGVTPN 267



 Score = 53.9 bits (128), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 45/72 (62%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
           A +K G   EA+ +F++++ +G  P+ V +  +I  Y    + + AL +F  M+++GV+P
Sbjct: 382 ASAKQGKVDEAMLVFSKMRHQGLKPNCVTYNTLINGYCKITRMENALALFQEMVSNGVSP 441

Query: 156 NAYTYAVLIKGL 167
           N  TY ++++GL
Sbjct: 442 NFITYNIMLQGL 453


>gi|413950866|gb|AFW83515.1| hypothetical protein ZEAMMB73_465290 [Zea mays]
          Length = 478

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 70/139 (50%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L + G   EAL +F+++  K   P VV +T VI   A  G   +AL++F  M   G
Sbjct: 203 IIDGLCRRGRLAEALDMFSEMVGKCIAPTVVTYTTVIHWLAREGCFDDALKIFHEMGRRG 262

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V+PN  TY+ LI GL       +     A + L  M+ +   PN  TY++V +   +   
Sbjct: 263 VSPNLVTYSSLIDGLCKGGRATS-----ALELLDRMIKEKKLPNMITYSSVIDGLCKEHM 317

Query: 213 VDEARGLLQQMKAKGFVPD 231
           + EA  +L +M+ +G  PD
Sbjct: 318 LSEAMEILDRMRLQGRKPD 336



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 70/162 (43%), Gaps = 14/162 (8%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTH--EALQLFAQIKDKGHMPDVVAHTAVI 129
           + +   MR  G    A     +  A   D   H  +AL+LF  I      PDV ++  +I
Sbjct: 149 RSLLADMRAAGFAPTAATYNVLLKAHCSDAAAHIEDALRLFRNIPK----PDVCSYNTII 204

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
           +     G+  EAL +F  M+   +AP   TY  +I  LA           DA K   EM 
Sbjct: 205 DGLCRRGRLAEALDMFSEMVGKCIAPTVVTYTTVIHWLA-----REGCFDDALKIFHEMG 259

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +G+ PN  TY+++ +   +  +   A  LL +M  +  +P+
Sbjct: 260 RRGVSPNLVTYSSLIDGLCKGGRATSALELLDRMIKEKKLPN 301



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 66/129 (51%), Gaps = 8/129 (6%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +IFH+M   G++ N V    + D L K G    AL+L  ++  +  +P+++ +++VI+  
Sbjct: 253 KIFHEMGRRGVSPNLVTYSSLIDGLCKGGRATSALELLDRMIKEKKLPNMITYSSVIDGL 312

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
                  EA+ +  RM   G  P+A  +  LI GL  A  G A    +A  YL EMV  G
Sbjct: 313 CKEHMLSEAMEILDRMRLQGRKPDAGLFGKLIVGLCDA--GRAV---EAANYLDEMVLAG 367

Query: 193 MRPNAGTYT 201
           + PN  T++
Sbjct: 368 IEPNRVTWS 376



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 70/155 (45%), Gaps = 21/155 (13%)

Query: 77  IFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           + H +  EG  ++A+K+F  + + G++                P++V ++++I+     G
Sbjct: 238 VIHWLAREGCFDDALKIFHEMGRRGVS----------------PNLVTYSSLIDGLCKGG 281

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196
           +   AL +  RM+     PN  TY+ +I GL         +L +A + L  M  +G +P+
Sbjct: 282 RATSALELLDRMIKEKKLPNMITYSSVIDGLC-----KEHMLSEAMEILDRMRLQGRKPD 336

Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           AG +  +      A +  EA   L +M   G  P+
Sbjct: 337 AGLFGKLIVGLCDAGRAVEAANYLDEMVLAGIEPN 371



 Score = 42.4 bits (98), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 33/163 (20%), Positives = 73/163 (44%), Gaps = 6/163 (3%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+  +M  E    N +    + D L K+ +  EA+++  +++ +G  PD      +I   
Sbjct: 288 ELLDRMIKEKKLPNMITYSSVIDGLCKEHMLSEAMEILDRMRLQGRKPDAGLFGKLIVGL 347

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAV--LIKGLAAAADGNAKILGDAQKYLMEMVG 190
             AG+  EA      M+ +G+ PN  T+++   I      A  +   LG A +       
Sbjct: 348 CDAGRAVEAANYLDEMVLAGIEPNRVTWSLHARINNTVLTALCDKGELGRAFQVYQSTRT 407

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK 233
           + +  +  T+  + E+F +   +++A  ++  M ++  +P+ +
Sbjct: 408 RSISTDPTTFHLLVESFSK-NNIEKAARVVLDMLSERCIPERE 449


>gi|356516744|ref|XP_003527053.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18900-like [Glycine max]
          Length = 882

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 81/162 (50%), Gaps = 8/162 (4%)

Query: 74  LQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           + ++  +M  +G   N V   ++  +  +     EAL +F Q+++ G  PD V +  +I+
Sbjct: 405 INKLLEQMVKDGCQPNVVTYNRLIHSYGRANYLGEALNVFNQMQEMGCEPDRVTYCTLID 464

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
            +A AG    A+ ++ RM   G++P+ +TY+V+I  L  + +     L  A +   EMV 
Sbjct: 465 IHAKAGFLDVAMSMYERMQEVGLSPDTFTYSVMINCLGKSGN-----LSAAHRLFCEMVD 519

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           +G  PN  TY  +     +A+    A  L + M+  GF PD+
Sbjct: 520 QGCVPNIVTYNILIALQAKARNYQTALKLYRDMQNAGFKPDK 561



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 80/173 (46%), Gaps = 9/173 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
            +F++M+  G   + V    + D  +K G    A+ ++ ++++ G  PD   ++ +I   
Sbjct: 442 NVFNQMQEMGCEPDRVTYCTLIDIHAKAGFLDVAMSMYERMQEVGLSPDTFTYSVMINCL 501

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             +G    A R+F  M+  G  PN  TY +LI     A    A+    A K   +M   G
Sbjct: 502 GKSGNLSAAHRLFCEMVDQGCVPNIVTYNILI-----ALQAKARNYQTALKLYRDMQNAG 556

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
            +P+  TY+ V E       ++EA  +  +MK   +VPDE  V   LID  G+
Sbjct: 557 FKPDKVTYSIVMEVLGYCGYLEEAEAVFFEMKQNNWVPDEP-VYGLLIDLWGK 608



 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 82/187 (43%), Gaps = 33/187 (17%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           ++ +M+  GL+ +      M + L K G    A +LF ++ D+G +P++V +  +I   A
Sbjct: 478 MYERMQEVGLSPDTFTYSVMINCLGKSGNLSAAHRLFCEMVDQGCVPNIVTYNILIALQA 537

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIK---------------------------- 165
            A   + AL+++  M  +G  P+  TY+++++                            
Sbjct: 538 KARNYQTALKLYRDMQNAGFKPDKVTYSIVMEVLGYCGYLEEAEAVFFEMKQNNWVPDEP 597

Query: 166 --GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
             GL     G A  +  A ++   M+  G+ PN  T  ++  AF+R  ++ +A  LLQ M
Sbjct: 598 VYGLLIDLWGKAGNVEKAWEWYHAMLRAGLLPNVPTCNSLLSAFLRVHRLPDAYNLLQNM 657

Query: 224 KAKGFVP 230
              G  P
Sbjct: 658 VTLGLNP 664



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 75/186 (40%), Gaps = 27/186 (14%)

Query: 72  RNLQ---EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAH 125
           RN Q   +++  M+  G   + V    + + L   G   EA  +F ++K    +PD   +
Sbjct: 540 RNYQTALKLYRDMQNAGFKPDKVTYSIVMEVLGYCGYLEEAEAVFFEMKQNNWVPDEPVY 599

Query: 126 TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185
             +I+ +  AG  ++A   +  ML +G+ PN  T   L+             L DA   L
Sbjct: 600 GLLIDLWGKAGNVEKAWEWYHAMLRAGLLPNVPTCNSLLSAFL-----RVHRLPDAYNLL 654

Query: 186 MEMVGKGMRPNAGTYTAVFEAFVRAQKVDE--------------ARGLLQQMKAKGFVPD 231
             MV  G+ P+  TYT +      AQ   +              A   LQ M A G  PD
Sbjct: 655 QNMVTLGLNPSLQTYTLLLSCCTEAQSPYDMGFCCELMAVSGHPAHAFLQSMPAAG--PD 712

Query: 232 EKAVKE 237
            + V++
Sbjct: 713 GQNVRD 718



 Score = 45.8 bits (107), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 6/127 (4%)

Query: 106 ALQLFAQIKDK-GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           AL  F  +K + G   D   +T ++     A +     ++  +M+  G  PN  TY  LI
Sbjct: 369 ALSFFYWLKRQPGFWHDGHTYTTMVGILGRAREFGAINKLLEQMVKDGCQPNVVTYNRLI 428

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
                   G A  LG+A     +M   G  P+  TY  + +   +A  +D A  + ++M+
Sbjct: 429 HSY-----GRANYLGEALNVFNQMQEMGCEPDRVTYCTLIDIHAKAGFLDVAMSMYERMQ 483

Query: 225 AKGFVPD 231
             G  PD
Sbjct: 484 EVGLSPD 490


>gi|218188645|gb|EEC71072.1| hypothetical protein OsI_02831 [Oryza sativa Indica Group]
          Length = 800

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 76/159 (47%), Gaps = 8/159 (5%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           ++ +M  +G+  N V      D   K      AL++   ++ KG  PD+ A+ ++I  + 
Sbjct: 548 VYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVRCKGLRPDIAAYNSLIYGFC 607

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G    AL+V + ML  G+ PN   Y   I G       N K++ +A ++  +M+ +G+
Sbjct: 608 QEGNMSHALQVLVLMLKDGLLPNISVYNSFITGYK-----NLKMMEEALRFYEKMIKEGI 662

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
             +  TYT + + F +   V  A  L  +M AKG +PD 
Sbjct: 663 DLDTATYTTLIDGFSKDGNVTFALKLYSEMVAKGNIPDH 701



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 75/160 (46%), Gaps = 9/160 (5%)

Query: 71  PRNLQEIFHKMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P    E+  +MR  GL   TN    +   L  D L  +A+ LF ++ D G +PD   +  
Sbjct: 333 PEKAYELCRQMRDHGLLPSTNEFNMVIKGLLNDKLWKDAVSLFKEMADSG-IPDAFTYNI 391

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           +I       + +EAL ++ +M  +GV P   TY  L+  L    +G    + +A K   E
Sbjct: 392 LIHWLCQRRKIREALNLWEKMNETGVKPYIVTYHSLL--LCYCVNG---CMDEAVKLYTE 446

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
           M GKG  PN  TYT + +  +     D+A  LL +MK  G
Sbjct: 447 MPGKGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNG 486



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 76/163 (46%), Gaps = 8/163 (4%)

Query: 72  RNLQEIFHKMRTEGLTNNAVKMFDAL---SKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R    ++ KM   G+    V     L     +G   EA++L+ ++  KG  P+VV +T +
Sbjct: 403 REALNLWEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTL 462

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           ++ + +     +A  +   M  +GV+ N YTY  LI GL     G    +G+  K     
Sbjct: 463 MKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCVV--GRVCEVGEMLK---RF 517

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             +G  P A TY ++   F++A  +  A  + QQM AKG  P+
Sbjct: 518 ETEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPN 560



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 65/131 (49%), Gaps = 5/131 (3%)

Query: 102 LTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYA 161
           +  EAL+ + ++  +G   D   +T +I+ ++  G    AL+++  M+A G  P+  T+ 
Sbjct: 646 MMEEALRFYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKLYSEMVAKGNIPDHITFT 705

Query: 162 VLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221
            L  GL    D     + DA+K L EM    +RPN   Y  +   ++R  K+ EA  L  
Sbjct: 706 ALTHGLCRNGD-----IDDARKLLDEMNRLDIRPNVLMYNMLINGYLRNGKLQEAFRLHD 760

Query: 222 QMKAKGFVPDE 232
           +M  +  +PD+
Sbjct: 761 EMLERKIMPDD 771



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 70/160 (43%), Gaps = 12/160 (7%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +M+  G++ N      + + L   G   E  ++  + + +G +P  + + ++I  + 
Sbjct: 478 LLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFI 537

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA--AAADGNAKILGDAQKYLMEMVGK 191
            AG    A  V+ +M A G+ PN  TY   I G    +  D   K+L D +        K
Sbjct: 538 KAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDGYCKTSCCDLALKMLNDVR-------CK 590

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G+RP+   Y ++   F +   +  A  +L  M   G +P+
Sbjct: 591 GLRPDIAAYNSLIYGFCQEGNMSHALQVLVLMLKDGLLPN 630



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 6/126 (4%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +AL +F +    G +P  V +T +I      G  ++A  +  +M   G+ P+   + ++I
Sbjct: 300 KALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTNEFNMVI 359

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           KGL      N K+  DA     EM   G+ P+A TY  +     + +K+ EA  L ++M 
Sbjct: 360 KGLL-----NDKLWKDAVSLFKEMADSGI-PDAFTYNILIHWLCQRRKIREALNLWEKMN 413

Query: 225 AKGFVP 230
             G  P
Sbjct: 414 ETGVKP 419



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 8/127 (6%)

Query: 77  IFHKMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
            + KM  EG+   T     + D  SKDG    AL+L++++  KG++PD +  TA+     
Sbjct: 653 FYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKLYSEMVAKGNIPDHITFTALTHGLC 712

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G   +A ++   M    + PN   Y +LI G       N K L +A +   EM+ + +
Sbjct: 713 RNGDIDDARKLLDEMNRLDIRPNVLMYNMLINGYLR----NGK-LQEAFRLHDEMLERKI 767

Query: 194 RPNAGTY 200
            P+  TY
Sbjct: 768 MPDDTTY 774



 Score = 45.1 bits (105), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 5/116 (4%)

Query: 112 QIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA 171
           +++ KGH  D      V+ A    G   +A+R+F  M AS + P+    +V I  L    
Sbjct: 167 EMRGKGHPLDAWMFDVVMRACFKEGMYDDAVRLFDEMPASEIEPDQRVCSVAIASLCKLR 226

Query: 172 DGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
           D N  +L      L +M   G  P   T+ +V +  V+  +++EA  +  ++ A G
Sbjct: 227 DANRALL-----VLRKMQDAGFVPWDFTFNSVVDVLVKGGRMEEALHIKDELLATG 277



 Score = 43.9 bits (102), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 38/183 (20%), Positives = 71/183 (38%), Gaps = 24/183 (13%)

Query: 67  EPTDPRNLQEIFHKMRTEGLTNNAVKMFD-------------------ALSKDGLTHEAL 107
            P D      +      EG+ ++AV++FD                   +L K    + AL
Sbjct: 173 HPLDAWMFDVVMRACFKEGMYDDAVRLFDEMPASEIEPDQRVCSVAIASLCKLRDANRAL 232

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
            +  +++D G +P      +V++     G+ +EAL +   +LA+G   +      L+ G 
Sbjct: 233 LVLRKMQDAGFVPWDFTFNSVVDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGY 292

Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
               +     +  A     E +  G+ P   TYT +          ++A  L +QM+  G
Sbjct: 293 CLQRE-----VRKALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHG 347

Query: 228 FVP 230
            +P
Sbjct: 348 LLP 350


>gi|356527777|ref|XP_003532484.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g21222-like [Glycine max]
          Length = 583

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 11/166 (6%)

Query: 71  PRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P   Q +F+ +  EG     +    +  AL++         L +++ D G  PD +   A
Sbjct: 38  PHEAQAVFNNLTEEGHKPTLITYTTLVAALTRQKRFKSIPALLSKVADNGMKPDSILLNA 97

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           +I A++ +G+  EA+++F +M   G  P   TY  LIKG   A      +       L+E
Sbjct: 98  MINAFSESGKVDEAMKIFQKMKEYGCKPTTSTYNTLIKGFGIAGRPYESM------KLLE 151

Query: 188 MVGK--GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           M+G+   ++PN  TY  + +A+   +K++EA  +L +M A G  PD
Sbjct: 152 MMGQDENVKPNDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPD 197



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 83/176 (47%), Gaps = 17/176 (9%)

Query: 78  FHKMRTEGLTNNAVKMFDALSKDGL-------THEALQLFAQIKDKGHMPDVVAHTAVIE 130
            ++M+  G+  N V +F++L K  L         EAL L  +    G  PDVV  + ++ 
Sbjct: 256 LYRMKELGVDPNPV-VFNSLIKGYLDTTDTNGVDEALTLMEEF---GIKPDVVTFSTIMN 311

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
           A++SAG  +    +F  M+ +G+ P+ + Y++L KG   A          A+  L  M  
Sbjct: 312 AWSSAGLMENCEEIFNDMVKAGIEPDIHAYSILAKGYVRAGQPR-----KAEALLTSMSK 366

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
            G++PN   +T +   +  A K+D A  L ++M   G  P+ K   E LI   G+ 
Sbjct: 367 YGVQPNVVIFTTIISGWCAAGKMDRAFRLCEKMHEMGTSPNLKTY-ETLIWGYGEA 421



 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 77/156 (49%), Gaps = 8/156 (5%)

Query: 81  MRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140
           M+ + +  NA  M +A S+ G   EA+++F ++K+ G  P    +  +I+ +  AG+  E
Sbjct: 88  MKPDSILLNA--MINAFSESGKVDEAMKIFQKMKEYGCKPTTSTYNTLIKGFGIAGRPYE 145

Query: 141 ALRVFMRM-LASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGT 199
           ++++   M     V PN  TY +LI+          K L +A   L +MV  G++P+  T
Sbjct: 146 SMKLLEMMGQDENVKPNDRTYNILIQAWCTK-----KKLEEAWNVLHKMVASGIQPDVVT 200

Query: 200 YTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAV 235
           Y  +  A+ +  + + A  L+ +M      P+E+  
Sbjct: 201 YNTMARAYAQNGETERAERLILKMPYNIVKPNERTC 236



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 8/168 (4%)

Query: 67  EPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVV 123
           + TD   + E    M   G+  + V    + +A S  GL     ++F  +   G  PD+ 
Sbjct: 280 DTTDTNGVDEALTLMEEFGIKPDVVTFSTIMNAWSSAGLMENCEEIFNDMVKAGIEPDIH 339

Query: 124 AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQK 183
           A++ + + Y  AGQ ++A  +   M   GV PN   +  +I G  AA       +  A +
Sbjct: 340 AYSILAKGYVRAGQPRKAEALLTSMSKYGVQPNVVIFTTIISGWCAAGK-----MDRAFR 394

Query: 184 YLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              +M   G  PN  TY  +   +  A++  +A  LL  M+ +G VP+
Sbjct: 395 LCEKMHEMGTSPNLKTYETLIWGYGEAKQPWKAEELLTTMEERGVVPE 442



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 75/182 (41%), Gaps = 11/182 (6%)

Query: 56  PYDPFKKVVDEEPTDPRNLQE---IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQL 109
           P D    ++ +     + L+E   + HKM   G+  + V    M  A +++G T  A +L
Sbjct: 161 PNDRTYNILIQAWCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMARAYAQNGETERAERL 220

Query: 110 FAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169
             ++      P+      +I  Y   G   EALR   RM   GV PN   +  LIKG   
Sbjct: 221 ILKMPYNIVKPNERTCGIIISGYCKEGNMPEALRFLYRMKELGVDPNPVVFNSLIKGYLD 280

Query: 170 AADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFV 229
             D N     D    LME    G++P+  T++ +  A+  A  ++    +   M   G  
Sbjct: 281 TTDTNGV---DEALTLMEEF--GIKPDVVTFSTIMNAWSSAGLMENCEEIFNDMVKAGIE 335

Query: 230 PD 231
           PD
Sbjct: 336 PD 337



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 78/160 (48%), Gaps = 9/160 (5%)

Query: 76  EIFHKMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQI-KDKGHMPDVVAHTAVIEA 131
           +IF KM+  G    T+    +       G  +E+++L   + +D+   P+   +  +I+A
Sbjct: 113 KIFQKMKEYGCKPTTSTYNTLIKGFGIAGRPYESMKLLEMMGQDENVKPNDRTYNILIQA 172

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           + +  + +EA  V  +M+ASG+ P+  TY  + +  A A +G  +    A++ +++M   
Sbjct: 173 WCTKKKLEEAWNVLHKMVASGIQPDVVTYNTMAR--AYAQNGETE---RAERLILKMPYN 227

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            ++PN  T   +   + +   + EA   L +MK  G  P+
Sbjct: 228 IVKPNERTCGIIISGYCKEGNMPEALRFLYRMKELGVDPN 267


>gi|168028441|ref|XP_001766736.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162681945|gb|EDQ68367.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 560

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 85/172 (49%), Gaps = 9/172 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           IF++M+ EG + + V    + D  SK G    A+ ++ +++  G  PD   ++ +I    
Sbjct: 124 IFYQMQEEGCSPDRVTYCTLVDLHSKAGFHDNAMDMYQKMQQAGFQPDTFTYSVIIHCLG 183

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG+  EAL++F  M+  G AP+  TY ++I     A  GN  +   A K   +M   G 
Sbjct: 184 KAGKVSEALKLFEEMVERGFAPSLVTYNIIID--LQAKSGNYVM---AMKLYNDMQDAGF 238

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
            P+  TY+ + E   +   + EA  +  +M+  G+VPD   +   ++D  G+
Sbjct: 239 HPDRVTYSIMMEVLGQIGHLQEAELMFNEMEQAGWVPD-APIYGVMVDMWGK 289



 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 85/172 (49%), Gaps = 9/172 (5%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +MR EG     V   ++  A  +     EA+++F Q++++G  PD V +  +++ ++
Sbjct: 89  LLQEMRREGCEPCVVTYNRLIHAYGRANFLGEAMRIFYQMQEEGCSPDRVTYCTLVDLHS 148

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG    A+ ++ +M  +G  P+ +TY+V+I  L     G A  + +A K   EMV +G 
Sbjct: 149 KAGFHDNAMDMYQKMQQAGFQPDTFTYSVIIHCL-----GKAGKVSEALKLFEEMVERGF 203

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
            P+  TY  + +   ++     A  L   M+  GF PD +     +++  GQ
Sbjct: 204 APSLVTYNIIIDLQAKSGNYVMAMKLYNDMQDAGFHPD-RVTYSIMMEVLGQ 254



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 79/158 (50%), Gaps = 8/158 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F +M   G   + V    + D  +K G    A++L+  ++D G  PD V ++ ++E  
Sbjct: 193 KLFEEMVERGFAPSLVTYNIIIDLQAKSGNYVMAMKLYNDMQDAGFHPDRVTYSIMMEVL 252

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G  +EA  +F  M  +G  P+A  Y V++        G A+    A ++  +M+  G
Sbjct: 253 GQIGHLQEAELMFNEMEQAGWVPDAPIYGVMVDMW-----GKARNAERALEWYQKMLDSG 307

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           + PN     ++  +++R Q+ D A G+++ MKA G VP
Sbjct: 308 LTPNVQISNSLLGSYLRMQQFDLAFGVIETMKAWGLVP 345



 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 77/178 (43%), Gaps = 28/178 (15%)

Query: 73  NLQEIFHKMRTEGLTNNAVKMFD-ALSKDGLTHEAL-------------------QLFAQ 112
           ++ E+    +  GL   A+K FD A  ++G  H+                     +L  +
Sbjct: 36  HINEVLKHQKESGL---ALKFFDWAKEQEGYKHDVCTYTTMIGIMGRARNFEACSRLLQE 92

Query: 113 IKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172
           ++ +G  P VV +  +I AY  A    EA+R+F +M   G +P+  TY  L+        
Sbjct: 93  MRREGCEPCVVTYNRLIHAYGRANFLGEAMRIFYQMQEEGCSPDRVTYCTLVD-----LH 147

Query: 173 GNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
             A    +A     +M   G +P+  TY+ +     +A KV EA  L ++M  +GF P
Sbjct: 148 SKAGFHDNAMDMYQKMQQAGFQPDTFTYSVIIHCLGKAGKVSEALKLFEEMVERGFAP 205


>gi|242069877|ref|XP_002450215.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
 gi|241936058|gb|EES09203.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
          Length = 862

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 51/162 (31%), Positives = 74/162 (45%), Gaps = 11/162 (6%)

Query: 76  EIFHKMRTEG---LTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           E+ H M  +G    T N V    + D L K      A  +   + DKG   DVV ++ +I
Sbjct: 182 ELLHTMAEDGGGNCTPNVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTII 241

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
           +    A     A  V   M+  GV P+  TY  +I GL       A+ +  A+  L  M+
Sbjct: 242 DGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLC-----KAQAVDRAEGVLQHMI 296

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            KG++P+  TY  + +   +AQ VD A G+LQ M  K   PD
Sbjct: 297 DKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVKPD 338



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 47/161 (29%), Positives = 73/161 (45%), Gaps = 11/161 (6%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGH---MPDVVAHTAVIE 130
           +  +M   G   N V    +   L  +    EAL+L   + + G     P+VV +  +I+
Sbjct: 148 LLRRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGNCTPNVVTYNTIID 207

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
               A     A  V   M+  GV  +  TY+ +I GL       A+ +  A+  L  M+ 
Sbjct: 208 GLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLC-----KAQAVDRAEGVLQHMID 262

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           KG++P+  TY  + +   +AQ VD A G+LQ M  KG  PD
Sbjct: 263 KGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPD 303



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 5/131 (3%)

Query: 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
           G T EA QL   +   G  PD++++  ++  Y   G+   A  +F  ML  GV P A TY
Sbjct: 598 GRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTY 657

Query: 161 AVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
           + +++GL      + +   +A++  + M+  G + +  TY  +     +   VDEA  + 
Sbjct: 658 STILQGLF-----HTRRFSEAKELYLNMIKSGQQWDIYTYNIILNGLCKTNCVDEAFKIF 712

Query: 221 QQMKAKGFVPD 231
           Q + +K   P+
Sbjct: 713 QSLCSKDLRPN 723



 Score = 63.5 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 47/159 (29%), Positives = 79/159 (49%), Gaps = 14/159 (8%)

Query: 78  FHKMRTEGLTNNAVKMFDALSKDGLT----HEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           F++M  +G+T N+V +F++L     T     +A +LF ++ D+G  P+VV    ++    
Sbjct: 502 FNQMINDGVTPNSV-VFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCNLC 560

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKG--LAAAADGNAKILGDAQKYLMEMVGK 191
           + GQ   A R+   M   GV PN  +Y  LI G  LA   D       +A + L  MV  
Sbjct: 561 NEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTD-------EAAQLLDVMVSV 613

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           G++P+  +Y  +   + +  ++D A  L ++M  KG  P
Sbjct: 614 GLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTP 652



 Score = 62.8 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           IF +M   GL+ + V    + DAL K G   +A+  F Q+ + G  P+ V   +++    
Sbjct: 466 IFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLKFNQMINDGVTPNSVVFNSLVYGLC 525

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
           +  + ++A  +F  M   GV PN   +  ++  L    +G   +   AQ+ +  M   G+
Sbjct: 526 TVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCNLCN--EGQVMV---AQRLIDSMERVGV 580

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           RPN  +Y  +      A + DEA  LL  M + G  PD
Sbjct: 581 RPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVGLKPD 618



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/178 (26%), Positives = 79/178 (44%), Gaps = 16/178 (8%)

Query: 74  LQEIFHK-MRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           LQ +  K ++ + +T N +   D L K      A  +   + DK   PD+  +  +I  Y
Sbjct: 292 LQHMIDKGVKPDVVTYNTI--IDGLCKAQAVDRADGVLQHMIDKDVKPDIQTYNCLIHGY 349

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
            S G+ KE +R    M A G+ P+  TY++L+  L      N K   +A+K    M+ KG
Sbjct: 350 LSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCK----NGKCT-EARKIFYCMIRKG 404

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE--------KAVKEALIDK 242
           ++PN   Y  +   +     + +   LL  M A G  P+            K+A+ID+
Sbjct: 405 IKPNVTIYGILLHGYAARGAIADLTDLLDLMVANGISPNNYIFNIVLCAYAKKAMIDE 462



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 5/136 (3%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
           A +K  +  EA+ +F+++   G  PDVV +  +I+A    G+  +A+  F +M+  GV P
Sbjct: 453 AYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLKFNQMINDGVTP 512

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           N+  +  L+ GL    D   K    A++   EM  +G+RPN   +  +        +V  
Sbjct: 513 NSVVFNSLVYGL-CTVDRWEK----AEELFFEMWDQGVRPNVVFFNTIMCNLCNEGQVMV 567

Query: 216 ARGLLQQMKAKGFVPD 231
           A+ L+  M+  G  P+
Sbjct: 568 AQRLIDSMERVGVRPN 583



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/156 (24%), Positives = 74/156 (47%), Gaps = 8/156 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+F +M  +G+  N V    +   L  +G    A +L   ++  G  P+V+++  +I  
Sbjct: 534 EELFFEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGG 593

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +  AG+  EA ++   M++ G+ P+  +Y  L++G           + +A     EM+ K
Sbjct: 594 HCLAGRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGR-----IDNAYCLFREMLRK 648

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
           G+ P A TY+ + +     ++  EA+ L   M   G
Sbjct: 649 GVTPGAVTYSTILQGLFHTRRFSEAKELYLNMIKSG 684



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/159 (27%), Positives = 69/159 (43%), Gaps = 8/159 (5%)

Query: 74  LQEIFHK-MRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           LQ +  K ++ + +T N +   D L K      A  +   + DKG  PDVV +  +I+  
Sbjct: 257 LQHMIDKGVKPDVVTYNTI--IDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGL 314

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             A     A  V   M+   V P+  TY  LI G  +  +    +     + L EM  +G
Sbjct: 315 CKAQAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVV-----RRLEEMYARG 369

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + P+  TY+ + +   +  K  EAR +   M  KG  P+
Sbjct: 370 LDPDVVTYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPN 408



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 71/175 (40%), Gaps = 12/175 (6%)

Query: 77  IFHKMRTEGLTNNAVKMFDALSKDGLTH-----EALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +F +M  +G+T  AV     L   GL H     EA +L+  +   G   D+  +  ++  
Sbjct: 641 LFREMLRKGVTPGAVTYSTILQ--GLFHTRRFSEAKELYLNMIKSGQQWDIYTYNIILNG 698

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
                   EA ++F  + +  + PN  T+ ++I  L     G  K   DA      +   
Sbjct: 699 LCKTNCVDEAFKIFQSLCSKDLRPNIITFTIMIDVLFKG--GRKK---DAMDLFASIPSH 753

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
           G+ PN  TY  + +  ++   +DE   L   M+  G  PD   +   +    G+G
Sbjct: 754 GLVPNVVTYCIMMKNIIQEGLLDEFDNLFLAMEKSGCTPDSVMLNAIIRSLLGRG 808



 Score = 49.3 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 71/170 (41%), Gaps = 20/170 (11%)

Query: 74  LQEIFHKMR---TEGLTNNAVK------------MFDALSKDGLTHEALQLFAQIKDKGH 118
           LQ +FH  R    + L  N +K            + + L K     EA ++F  +  K  
Sbjct: 661 LQGLFHTRRFSEAKELYLNMIKSGQQWDIYTYNIILNGLCKTNCVDEAFKIFQSLCSKDL 720

Query: 119 MPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKIL 178
            P+++  T +I+     G+ K+A+ +F  + + G+ PN  TY +++K +         +L
Sbjct: 721 RPNIITFTIMIDVLFKGGRKKDAMDLFASIPSHGLVPNVVTYCIMMKNIIQEG-----LL 775

Query: 179 GDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
            +     + M   G  P++    A+  + +   ++  A   L ++    F
Sbjct: 776 DEFDNLFLAMEKSGCTPDSVMLNAIIRSLLGRGEIMRAGAYLSKIDEMNF 825



 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/160 (22%), Positives = 67/160 (41%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           ++IF+ M  +G+  N      +    +  G   +   L   +   G  P+      V+ A
Sbjct: 394 RKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLLDLMVANGISPNNYIFNIVLCA 453

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           YA      EA+ +F RM   G++P+  TY +LI  L          + DA     +M+  
Sbjct: 454 YAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGR-----VDDAVLKFNQMIND 508

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G+ PN+  + ++        + ++A  L  +M  +G  P+
Sbjct: 509 GVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPN 548


>gi|255572834|ref|XP_002527349.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533268|gb|EEF35021.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 443

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 85/179 (47%), Gaps = 9/179 (5%)

Query: 57  YDPFKKVVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQI 113
           Y+P      +E    R + E   KM + G   + V    +  AL KDG    A++L  Q+
Sbjct: 227 YNPLLHGFCKEKKMERAI-EYLGKMTSRGCYPDIVTYNTLLTALCKDGKVDAAVELLNQL 285

Query: 114 KDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADG 173
             KG  P ++ +  VI+  +  G+  +A ++   M A G+ P+  TY+ L+ GL+     
Sbjct: 286 SSKGCSPVLITYNTVIDGLSKVGKTDQAAKLLDEMRAKGLKPDIITYSSLVGGLSREGK- 344

Query: 174 NAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
               + +A K+  ++   G++PNA TY A+     +A+K D A   L  M  +G  P E
Sbjct: 345 ----VDEAIKFFHDLEVLGVKPNAITYNAIMLGLCKARKTDRAIDFLAYMVQRGCKPTE 399



 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 85/169 (50%), Gaps = 12/169 (7%)

Query: 76  EIFHKMRTEG-----LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           E+ +++ ++G     +T N V   D LSK G T +A +L  +++ KG  PD++ +++++ 
Sbjct: 280 ELLNQLSSKGCSPVLITYNTV--IDGLSKVGKTDQAAKLLDEMRAKGLKPDIITYSSLVG 337

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
             +  G+  EA++ F  +   GV PNA TY  ++ GL  A   +  I      +L  MV 
Sbjct: 338 GLSREGKVDEAIKFFHDLEVLGVKPNAITYNAIMLGLCKARKTDRAI-----DFLAYMVQ 392

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
           +G +P   +YT + E         EA  LL ++  +G V    A K A+
Sbjct: 393 RGCKPTEASYTILIEGLAYEGLAKEALELLNELCLRGVVKKSSAEKVAV 441



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 68/142 (47%), Gaps = 5/142 (3%)

Query: 90  AVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRML 149
              +     K G T +A ++   I+D G +PDV+ +  +I    S G+  +A ++   M+
Sbjct: 122 CTSLIRGFCKIGKTRKATRIMEIIEDSGAVPDVITYNVLISGMCSTGRWMDAEKLLADMV 181

Query: 150 ASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
             G +P+  T+ +LI  L         +LG A   L +M   G  PN+ +Y  +   F +
Sbjct: 182 RRGCSPSVVTFNILINFLCRKG-----LLGRAIDVLEKMPKHGCTPNSLSYNPLLHGFCK 236

Query: 210 AQKVDEARGLLQQMKAKGFVPD 231
            +K++ A   L +M ++G  PD
Sbjct: 237 EKKMERAIEYLGKMTSRGCYPD 258



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 73/159 (45%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++  KM   G T N++    +     K+     A++   ++  +G  PD+V +  ++ A 
Sbjct: 210 DVLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTAL 269

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+   A+ +  ++ + G +P   TY  +I GL+     +      A K L EM  KG
Sbjct: 270 CKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTD-----QAAKLLDEMRAKG 324

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           ++P+  TY+++     R  KVDEA      ++  G  P+
Sbjct: 325 LKPDIITYSSLVGGLSREGKVDEAIKFFHDLEVLGVKPN 363



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 65/135 (48%), Gaps = 5/135 (3%)

Query: 97  LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
           L ++G   E  +    +  +G +PD++  T++I  +   G+ ++A R+   +  SG  P+
Sbjct: 94  LVRNGELEEGFRFLESMVYRGDIPDIIPCTSLIRGFCKIGKTRKATRIMEIIEDSGAVPD 153

Query: 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
             TY VLI G+ +          DA+K L +MV +G  P+  T+  +     R   +  A
Sbjct: 154 VITYNVLISGMCSTGR-----WMDAEKLLADMVRRGCSPSVVTFNILINFLCRKGLLGRA 208

Query: 217 RGLLQQMKAKGFVPD 231
             +L++M   G  P+
Sbjct: 209 IDVLEKMPKHGCTPN 223


>gi|224114285|ref|XP_002316718.1| predicted protein [Populus trichocarpa]
 gi|222859783|gb|EEE97330.1| predicted protein [Populus trichocarpa]
          Length = 684

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 75/138 (54%), Gaps = 5/138 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D+  K+G   +A ++  ++  +G +PDVV +TA+I  ++ AG+  +A ++  +M   G
Sbjct: 299 IVDSYCKEGRMDQAKEIVNEMFTRGCIPDVVTYTAIINGFSQAGEVGQARKMLQQMYKHG 358

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN  +Y   +KGL     GN+    +A++ +     +   PNA TY+ V   F R  K
Sbjct: 359 CKPNTVSYTAFLKGLCQK--GNS---SEAREMMKASEEQWWTPNAITYSVVMHGFRREGK 413

Query: 213 VDEARGLLQQMKAKGFVP 230
           + +A  ++++M  KGF P
Sbjct: 414 LSDACDVVREMIGKGFFP 431



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 76/163 (46%), Gaps = 8/163 (4%)

Query: 72  RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R + ++  KM    L  + V    +   L K     EALQ   + + +G   D V ++A+
Sbjct: 240 REVMDVIEKMEDTKLLADQVTYNTLIHMLCKHQHADEALQFLREAQKRGFQVDKVGYSAI 299

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           +++Y   G+  +A  +   M   G  P+  TY  +I G + A +     +G A+K L +M
Sbjct: 300 VDSYCKEGRMDQAKEIVNEMFTRGCIPDVVTYTAIINGFSQAGE-----VGQARKMLQQM 354

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              G +PN  +YTA  +   +     EAR +++  + + + P+
Sbjct: 355 YKHGCKPNTVSYTAFLKGLCQKGNSSEAREMMKASEEQWWTPN 397



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 76/173 (43%), Gaps = 10/173 (5%)

Query: 60  FKKVVDEEPTDPRNLQ--EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIK 114
           +  +VD    + R  Q  EI ++M T G   + V    + +  S+ G   +A ++  Q+ 
Sbjct: 296 YSAIVDSYCKEGRMDQAKEIVNEMFTRGCIPDVVTYTAIINGFSQAGEVGQARKMLQQMY 355

Query: 115 DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174
             G  P+ V++TA ++     G   EA  +          PNA TY+V++ G        
Sbjct: 356 KHGCKPNTVSYTAFLKGLCQKGNSSEAREMMKASEEQWWTPNAITYSVVMHGFRREGK-- 413

Query: 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
              L DA   + EM+GKG  P       + ++  R  +VDEA+  +++    G
Sbjct: 414 ---LSDACDVVREMIGKGFFPTPVEINLLLQSLCRIGRVDEAKKFMEECLNMG 463



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 63/137 (45%), Gaps = 5/137 (3%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
           + S+ G    A+Q+   ++  G  P+++     I     A   ++ALR   RM   G+ P
Sbjct: 127 SYSRAGKLRNAMQVLTMMQKAGIEPNLLVCNTAIHVLVMANMLEKALRFLERMQLLGIMP 186

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           N  TY  LIKG       +   + DA + + EM  KG  P+  +Y  V     + +++ E
Sbjct: 187 NVVTYNCLIKGYC-----DLHRVEDAMELISEMPLKGCSPDKVSYYTVMGFLCKNRRIRE 241

Query: 216 ARGLLQQMKAKGFVPDE 232
              ++++M+    + D+
Sbjct: 242 VMDVIEKMEDTKLLADQ 258



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 5/140 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M D LSK  L   A ++   +  +G          V+ +Y+ AG+ + A++V   M  +G
Sbjct: 89  MLDVLSKTKLCQGARRVLRLMVRRGIQRTPQDFCCVMVSYSRAGKLRNAMQVLTMMQKAG 148

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN     +L+   A      A +L  A ++L  M   G+ PN  TY  + + +    +
Sbjct: 149 IEPN-----LLVCNTAIHVLVMANMLEKALRFLERMQLLGIMPNVVTYNCLIKGYCDLHR 203

Query: 213 VDEARGLLQQMKAKGFVPDE 232
           V++A  L+ +M  KG  PD+
Sbjct: 204 VEDAMELISEMPLKGCSPDK 223



 Score = 53.5 bits (127), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 71/159 (44%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVKMFDA---LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+  +M  +G + + V  +     L K+    E + +  +++D   + D V +  +I   
Sbjct: 209 ELISEMPLKGCSPDKVSYYTVMGFLCKNRRIREVMDVIEKMEDTKLLADQVTYNTLIHML 268

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
                  EAL+        G   +   Y+ ++   +   +G    +  A++ + EM  +G
Sbjct: 269 CKHQHADEALQFLREAQKRGFQVDKVGYSAIVD--SYCKEGR---MDQAKEIVNEMFTRG 323

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             P+  TYTA+   F +A +V +AR +LQQM   G  P+
Sbjct: 324 CIPDVVTYTAIINGFSQAGEVGQARKMLQQMYKHGCKPN 362



 Score = 45.4 bits (106), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 5/132 (3%)

Query: 99  KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAY 158
           ++G   +A  +  ++  KG  P  V    ++++    G+  EA +     L  G A NA 
Sbjct: 410 REGKLSDACDVVREMIGKGFFPTPVEINLLLQSLCRIGRVDEAKKFMEECLNMGCAVNAV 469

Query: 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218
            +  +I       D  A     A   L +M      P+A TYT + +A  +  +++EA  
Sbjct: 470 NFTTVIHRFCQQDDIEA-----ALSLLDDMYLSNKHPDAVTYTTIIDALGKKGRIEEATE 524

Query: 219 LLQQMKAKGFVP 230
           L  +M  KG  P
Sbjct: 525 LTLKMLKKGIDP 536



 Score = 45.4 bits (106), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 5/131 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +  +L + G   EA +   +  + G   + V  T VI  +      + AL +   M  S 
Sbjct: 439 LLQSLCRIGRVDEAKKFMEECLNMGCAVNAVNFTTVIHRFCQQDDIEAALSLLDDMYLSN 498

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+A TY  +I  L     G    + +A +  ++M+ KG+ P   TY  V   + +  +
Sbjct: 499 KHPDAVTYTTIIDAL-----GKKGRIEEATELTLKMLKKGIDPTPVTYRTVIHRYGQIGR 553

Query: 213 VDEARGLLQQM 223
           V++   LL +M
Sbjct: 554 VEDLLNLLDKM 564


>gi|449462001|ref|XP_004148730.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic-like [Cucumis sativus]
 gi|449521148|ref|XP_004167592.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic-like [Cucumis sativus]
          Length = 710

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 46/142 (32%), Positives = 75/142 (52%), Gaps = 6/142 (4%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +A++ F ++   G MPD V ++A+++ YA+ G+ +E L ++ R  ASG  P+ YT++VL 
Sbjct: 238 KAMEWFERMYKTGLMPDEVTYSAILDVYANLGKVEEVLSLYERGRASGWTPDPYTFSVLG 297

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           K    A D +  +       L EM    M+PN   Y  + +A  +A K   AR L  +M 
Sbjct: 298 KMFGEAGDYDGIMY-----VLQEMKSIEMQPNLVVYNTLLDAMGKAGKPGFARSLFDEMV 352

Query: 225 AKGFVPDEKAVKEALIDKRGQG 246
             G  P+EK +  AL+   G+ 
Sbjct: 353 ESGITPNEKTLT-ALVKIYGKA 373



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 74/162 (45%), Gaps = 12/162 (7%)

Query: 72  RNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHM-PDVVAHTA 127
           R+  +++ +MR+ G   + +    + +  +  GL  EA  LF ++K   H  PD  ++TA
Sbjct: 377 RDALDLWERMRSNGWPMDFILYNTLLNMCADLGLEEEAETLFEEMKKSKHSRPDSWSYTA 436

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           ++  Y S G  K ++ +F  ML  GV  N      LI+ L     G +  + D  +    
Sbjct: 437 MLNIYGSGGNVKRSMELFEEMLELGVEINVMCCTCLIQCL-----GKSGRIDDLVRVFNV 491

Query: 188 MVGKGMRPN---AGTYTAVFEAFVRAQKVDEARGLLQQMKAK 226
            V KG++P+    G   +V      ++ +++    LQQ   K
Sbjct: 492 SVQKGIKPDDRLCGCLLSVLSLCYNSEDINKVFTCLQQANPK 533



 Score = 38.9 bits (89), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 38/206 (18%), Positives = 80/206 (38%), Gaps = 44/206 (21%)

Query: 67  EPTDPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVV 123
           E  D   +  +  +M++  +  N V    + DA+ K G    A  LF ++ + G  P+  
Sbjct: 302 EAGDYDGIMYVLQEMKSIEMQPNLVVYNTLLDAMGKAGKPGFARSLFDEMVESGITPNEK 361

Query: 124 AHTAVIEAYASAGQGKEALRVFMRMLASGVA----------------------------- 154
             TA+++ Y  A   ++AL ++ RM ++G                               
Sbjct: 362 TLTALVKIYGKARWARDALDLWERMRSNGWPMDFILYNTLLNMCADLGLEEEAETLFEEM 421

Query: 155 -------PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAF 207
                  P++++Y  ++    +   GN K    + +   EM+  G+  N    T + +  
Sbjct: 422 KKSKHSRPDSWSYTAMLNIYGSG--GNVK---RSMELFEEMLELGVEINVMCCTCLIQCL 476

Query: 208 VRAQKVDEARGLLQQMKAKGFVPDEK 233
            ++ ++D+   +      KG  PD++
Sbjct: 477 GKSGRIDDLVRVFNVSVQKGIKPDDR 502


>gi|359481811|ref|XP_002278330.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41720-like [Vitis vinifera]
          Length = 848

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 85/170 (50%), Gaps = 8/170 (4%)

Query: 73  NLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           N Q  F+ M  EGL  N V    +  A +  G+  EA  +F +IK  G  PDVV++T+++
Sbjct: 357 NCQTAFNTMLAEGLKPNIVSYNALIGAYASHGMDKEAFSVFNEIKKNGFHPDVVSYTSLL 416

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
            AY  +G+ ++A++VF  M  +   PN  +Y  LI      A G+  +L +A + L EM 
Sbjct: 417 NAYGKSGKPEKAMKVFELMRRNHCKPNLVSYNALID-----AYGSKGLLTEAVEILHEME 471

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
             G++PN  +   +  A  R  +  + + +L   + +G   +  A   A+
Sbjct: 472 RNGVQPNIVSICTLLAACGRCGQKVKIKSVLSAAELRGIKLNTTAYNSAI 521



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 73/151 (48%), Gaps = 8/151 (5%)

Query: 96  ALSKDGLTHEALQLFAQIKDK--GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGV 153
            L K G   +A+ +F  +K+K     PDVV  T +I  Y+  GQ +     F  MLA G+
Sbjct: 311 CLVKLGQNGKAIDIFNSMKEKRSECYPDVVTFTTIIHLYSVCGQIENCQTAFNTMLAEGL 370

Query: 154 APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV 213
            PN  +Y  LI   A A+ G  K   +A     E+   G  P+  +YT++  A+ ++ K 
Sbjct: 371 KPNIVSYNALIG--AYASHGMDK---EAFSVFNEIKKNGFHPDVVSYTSLLNAYGKSGKP 425

Query: 214 DEARGLLQQMKAKGFVPDEKAVKEALIDKRG 244
           ++A  + + M+     P+  +   ALID  G
Sbjct: 426 EKAMKVFELMRRNHCKPNLVSYN-ALIDAYG 455



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQL---FAQIKDKGHMPDVVAHTAVIEAY 132
           EI H+M   G+  N V +   L+  G   + +++    +  + +G   +  A+ + I +Y
Sbjct: 465 EILHEMERNGVQPNIVSICTLLAACGRCGQKVKIKSVLSAAELRGIKLNTTAYNSAIGSY 524

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
            S G+  +AL ++  M    V P+  TY VLI G    +       G+A  +L EM+   
Sbjct: 525 LSVGEYDKALSLYRAMRTKKVKPDPVTYNVLISGCCKMSK-----YGEALGFLDEMMDLK 579

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +  +   Y++V  A+ +  +V EA  +  +MK  G  PD
Sbjct: 580 IPLSKEVYSSVICAYSKQGQVTEAESMFTKMKMVGCRPD 618



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 5/134 (3%)

Query: 98  SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA 157
           ++  +  +A  LF +++     PD   + A+I A+  AGQ + A+ +   ML + + P+ 
Sbjct: 173 ARHNIVDQARGLFFEMQKWRCKPDAETYNALINAHGRAGQWRWAMNIMDDMLRAAIPPSR 232

Query: 158 YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
            TY  LI   A  + GN K   +A     +M   G+ P+  T+  V  A+ R  +  +  
Sbjct: 233 STYNNLIN--ACGSSGNWK---EALNVCKKMTENGVGPDLVTHNIVLSAYKRGNQYSKVL 287

Query: 218 GLLQQMKAKGFVPD 231
              + MK     PD
Sbjct: 288 SYFELMKGTNIRPD 301



 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/171 (21%), Positives = 63/171 (36%), Gaps = 32/171 (18%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +A    G   EAL +  ++ + G  PD+V H  V+ AY    Q  + L  F  M  + 
Sbjct: 238 LINACGSSGNWKEALNVCKKMTENGVGPDLVTHNIVLSAYKRGNQYSKVLSYFELMKGTN 297

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKI--------------------------------LGD 180
           + P+  T  ++I  L         I                                + +
Sbjct: 298 IRPDTTTLNIVIYCLVKLGQNGKAIDIFNSMKEKRSECYPDVVTFTTIIHLYSVCGQIEN 357

Query: 181 AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            Q     M+ +G++PN  +Y A+  A+       EA  +  ++K  GF PD
Sbjct: 358 CQTAFNTMLAEGLKPNIVSYNALIGAYASHGMDKEAFSVFNEIKKNGFHPD 408



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 78/166 (46%), Gaps = 18/166 (10%)

Query: 81  MRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVA---HTAVIEAYASAGQ 137
           MR + +  N    F+ +S   L  E  ++   IK       VV+      ++     +G+
Sbjct: 680 MREKKIPFNNSSFFEMVSACSLLREWREIIGLIKLMEPSISVVSIGLLNQLLHFLGKSGK 739

Query: 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKY---LMEMVGKGMR 194
            +  +++F +++ASG   N YTY++L+K L AA        G+ +KY   L  M   G++
Sbjct: 740 IETMMKLFYKIVASGAEINFYTYSILLKNLLAA--------GNWRKYIEVLQWMEEAGLQ 791

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
           P+ G Y ++  +F + +   E   ++Q+      +PD  + +  LI
Sbjct: 792 PSVGMYRSI-SSFAQNRSGAEYAAVIQERIG---MPDNSSSQALLI 833



 Score = 45.4 bits (106), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 39/72 (54%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
           A SK G   EA  +F ++K  G  PDV+ +TA+I AY  A   ++A  +F+ M    V P
Sbjct: 593 AYSKQGQVTEAESMFTKMKMVGCRPDVITYTAMIHAYDVAENWEKASALFLEMETDDVQP 652

Query: 156 NAYTYAVLIKGL 167
           ++   + L++  
Sbjct: 653 DSIACSSLMRAF 664


>gi|297806115|ref|XP_002870941.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316778|gb|EFH47200.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 719

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 86/182 (47%), Gaps = 10/182 (5%)

Query: 50  KSKLPPPYDPFKKVVDE--EPTDPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTH 104
           +S L P    ++ ++ E  +  D    + IF  MR+  +  + V    M    ++ G   
Sbjct: 323 RSGLSPDSTTYRSLLMEACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLD 382

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +AL  F  +K+ G +PD V +T +I+ Y   G   EA+ +   ML  G A +  TY  ++
Sbjct: 383 KALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTIL 442

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            GL        K+LG+A K   EM  +G+ P++ T T + +   +   +  A  L ++MK
Sbjct: 443 HGLC-----KRKMLGEADKLFNEMTERGLFPDSYTLTILIDGHCKLGNLQNAMELFKKMK 497

Query: 225 AK 226
            K
Sbjct: 498 EK 499



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M +AL KDG   +     +++++KG  PD+V +  +I AY+S G  +EA  +   M + G
Sbjct: 231 MVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLISAYSSQGLMEEAFELMHAMPSKG 290

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            +P  YTY  +I GL             A++   EM+  G+ P++ TY ++     +   
Sbjct: 291 FSPGVYTYNTVINGLCKHGKYER-----AKEVFAEMLRSGLSPDSTTYRSLLMEACKKGD 345

Query: 213 VDEARGLLQQMKAKGFVPD 231
             E   +   M+++  VPD
Sbjct: 346 AVETENIFSDMRSRDVVPD 364



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 84/165 (50%), Gaps = 10/165 (6%)

Query: 72  RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           +N  E+F KM+ + +  + V    + D   K G    A +++A +  K  +P  ++ + +
Sbjct: 487 QNAMELFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISFSIL 546

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           + A  S G   EA RV+  M++  + P       +IKG   +  GNA    D + +L +M
Sbjct: 547 VNALCSKGHLSEAFRVWDEMISKSIKPTVMICNSMIKGYCRS--GNA---SDGEIFLEKM 601

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK--GFVPD 231
           + +G  P+  +Y  +   FV+ + + +A GL+++M+ K  G VPD
Sbjct: 602 ISEGFVPDCISYNTLIYGFVKEENMSKAFGLVKKMEEKQGGLVPD 646



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/159 (22%), Positives = 78/159 (49%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F++M   GL  ++  +    D   K G    A++LF ++K+K    DVV +  +++ +
Sbjct: 456 KLFNEMTERGLFPDSYTLTILIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGF 515

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G    A  ++  M++  + P   ++++L+  L +        L +A +   EM+ K 
Sbjct: 516 GKVGDIDTAKEIWADMVSKEILPTPISFSILVNALCSKGH-----LSEAFRVWDEMISKS 570

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           ++P      ++ + + R+    +    L++M ++GFVPD
Sbjct: 571 IKPTVMICNSMIKGYCRSGNASDGEIFLEKMISEGFVPD 609



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/170 (22%), Positives = 78/170 (45%), Gaps = 9/170 (5%)

Query: 75  QEIFHKMRTEGLTNNAVKMFDAL---SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+F +M   GL+ ++      L    K G   E   +F+ ++ +  +PD+V  ++++  
Sbjct: 315 KEVFAEMLRSGLSPDSTTYRSLLMEACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSL 374

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +  +G   +AL  F  +  +G+ P+   Y +LI+G          ++ +A     EM+ +
Sbjct: 375 FTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKG-----MISEAMNLRNEMLQQ 429

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           G   +  TY  +     + + + EA  L  +M  +G  PD   +   LID
Sbjct: 430 GCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERGLFPDSYTLT-ILID 478



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 63/126 (50%), Gaps = 5/126 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA + F  ++ KG+   + A  A+I +    G  + A R++  +  SGV  N YT  +++
Sbjct: 173 EAYEAFTLLRSKGYTVSIDACNALIGSLVRIGWVELAWRIYQEISRSGVGVNVYTLNIMV 232

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
             L    DG  + +G    +L E+  KG+ P+  TY  +  A+     ++EA  L+  M 
Sbjct: 233 NAL--CKDGKMEKVG---TFLSEVQEKGVYPDIVTYNTLISAYSSQGLMEEAFELMHAMP 287

Query: 225 AKGFVP 230
           +KGF P
Sbjct: 288 SKGFSP 293



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 74/173 (42%), Gaps = 32/173 (18%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +AL   G   EA +++ ++  K   P V+   ++I+ Y  +G   +      +M++ G
Sbjct: 546 LVNALCSKGHLSEAFRVWDEMISKSIKPTVMICNSMIKGYCRSGNASDGEIFLEKMISEG 605

Query: 153 VAPNAYTYAVLIKGLA-----AAADG-------------------NAKILG--------D 180
             P+  +Y  LI G       + A G                   N+ + G        +
Sbjct: 606 FVPDCISYNTLIYGFVKEENMSKAFGLVKKMEEKQGGLVPDVFTYNSILHGFCRENQMKE 665

Query: 181 AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK 233
           A+  L +M+ +G+ P+  TYT++   FV    + EA     +M  +GF PD+K
Sbjct: 666 AEAVLRKMIERGVNPDRSTYTSLINGFVSQDNLTEAFRFHDEMLQRGFSPDDK 718



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 11/127 (8%)

Query: 76  EIF-HKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDK--GHMPDVVAHTAVI 129
           EIF  KM +EG   + +    +     K+    +A  L  ++++K  G +PDV  + +++
Sbjct: 595 EIFLEKMISEGFVPDCISYNTLIYGFVKEENMSKAFGLVKKMEEKQGGLVPDVFTYNSIL 654

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
             +    Q KEA  V  +M+  GV P+  TY  LI G  +  +     L +A ++  EM+
Sbjct: 655 HGFCRENQMKEAEAVLRKMIERGVNPDRSTYTSLINGFVSQDN-----LTEAFRFHDEML 709

Query: 190 GKGMRPN 196
            +G  P+
Sbjct: 710 QRGFSPD 716


>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
 gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
          Length = 1031

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 69/137 (50%), Gaps = 5/137 (3%)

Query: 95  DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           D L K G   EA +L  ++  KG  P++V +  +I+    A + ++A  +   +++SG  
Sbjct: 374 DGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFV 433

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
           P+  TY +++ GL          L  A K +  M+ +G  P+  TYTA+ E   R  +VD
Sbjct: 434 PDVVTYTIIVDGLCKEGR-----LDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVD 488

Query: 215 EARGLLQQMKAKGFVPD 231
           EA  + ++M +K    D
Sbjct: 489 EAHHIFKEMVSKDCTAD 505



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 82/197 (41%), Gaps = 38/197 (19%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K   T +A ++  ++ D+G  PD V   ++++    AG+ + A  +   M    
Sbjct: 267 LIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERN 326

Query: 153 VAPNAYTYAVLIKGLA----------------------------AAADGNAK--ILGDAQ 182
             P+  TY  LI GL                               ADG  K   + +A 
Sbjct: 327 CRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAF 386

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD--------EKA 234
           + + EM GKG  PN  TY  + +   +A K ++A  LL+ + + GFVPD        +  
Sbjct: 387 ELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGL 446

Query: 235 VKEALIDKRGQGFRGVI 251
            KE  +DK  +   G++
Sbjct: 447 CKEGRLDKALKMVEGML 463



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 79/169 (46%), Gaps = 12/169 (7%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+  +M  +G T N V    + D L K   T +A +L   +   G +PDVV +T +++  
Sbjct: 387 ELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGL 446

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+  +AL++   ML  G  P+  TY  L++GL          + +A     EMV K 
Sbjct: 447 CKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGR-----VDEAHHIFKEMVSKD 501

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
              +A  Y ++   + ++ +  EA+ ++  ++   ++     V  AL+D
Sbjct: 502 CTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPYID----VYNALMD 546



 Score = 70.1 bits (170), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 83/194 (42%), Gaps = 12/194 (6%)

Query: 55  PPYDPFKKVVDEEPTDPR--NLQEIFHKMRTEGLTNNAVKMF----DALSKDGLTHEALQ 108
           P  D +  ++D    + R   +  +F  M   G   N +K +    D L K G   EA  
Sbjct: 536 PYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPN-IKTYNIVMDGLCKHGKVDEAFP 594

Query: 109 LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
               +   G +PDVV++  +I+    A + KEA +V  +M+ +G+ P+A TY  L+    
Sbjct: 595 FLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFC 654

Query: 169 AAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
                  +   DA   L  M+  G+ P+  TY  +     +  ++ +A  L+ +M   G 
Sbjct: 655 -----KEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGC 709

Query: 229 VPDEKAVKEALIDK 242
           V         +ID+
Sbjct: 710 VVSACTTYNTIIDR 723



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 9/135 (6%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
           A  K G   +AL++F  I      PD +A+ A+I  +        AL     M    VAP
Sbjct: 204 AFCKTGRLKDALEIFRNIPS----PDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAP 259

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           + +TY +LI GL  A+  +      A + L EMV +G+ P+  T+ ++ +   +A K + 
Sbjct: 260 DVFTYNILIDGLCKASKTDK-----ASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFER 314

Query: 216 ARGLLQQMKAKGFVP 230
           A  LL  M  +   P
Sbjct: 315 AHSLLAVMAERNCRP 329



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 5/138 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L K      A  L  +    G +PDVV ++ + +     G+  EA  +   M   G
Sbjct: 337 LISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKG 396

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN  TY  LI GL  A+         A + L  +V  G  P+  TYT + +   +  +
Sbjct: 397 CTPNLVTYNTLIDGLCKASKTEK-----AYELLESLVSSGFVPDVVTYTIIVDGLCKEGR 451

Query: 213 VDEARGLLQQMKAKGFVP 230
           +D+A  +++ M  +G  P
Sbjct: 452 LDKALKMVEGMLKRGCTP 469



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 62/127 (48%), Gaps = 9/127 (7%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +A  +  + K +G  P+V  +T +  A+   G+ K+AL +F  +     +P+A  Y  +I
Sbjct: 178 KAFTMLDKAKVRGFKPEVSVYTILTRAFCKTGRLKDALEIFRNI----PSPDAIAYNAII 233

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            G     D +      A ++L EM  + + P+  TY  + +   +A K D+A  +L +M 
Sbjct: 234 HGHCRKNDCDG-----ALEFLKEMNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMV 288

Query: 225 AKGFVPD 231
            +G  PD
Sbjct: 289 DRGVTPD 295



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 75/177 (42%), Gaps = 13/177 (7%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +   M   G+  N V      D L K+G   EA  L +++     + D V++T VI    
Sbjct: 736 LMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDT---LRDEVSYTTVIIGLC 792

Query: 134 SAGQGKEALRVFMRMLA-SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
            A Q   A ++   M+A  G+   ++T+ +LI           K L +A   L  MV +G
Sbjct: 793 KAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFT-----KTKRLDEALTLLGLMVQRG 847

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRG 249
             P+  TY  V     +  KVD+A  L  +M  +G V    +    +    GQG RG
Sbjct: 848 CSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQG-RG 903



 Score = 43.9 bits (102), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 27/118 (22%), Positives = 49/118 (41%), Gaps = 5/118 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A+  F    D+G           ++     G       +F RML +G AP++YTY ++IK
Sbjct: 109 AIVFFVWAGDRGFKHSTFTRNCFLQTLLENGSSDRIPAMFERMLDAGYAPDSYTYHLVIK 168

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
            L          +  A   L +   +G +P    YT +  AF +  ++ +A  + + +
Sbjct: 169 SLC-----QMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFCKTGRLKDALEIFRNI 221


>gi|255574497|ref|XP_002528160.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532417|gb|EEF34211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 569

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 82/159 (51%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F++MR++    N      + +A +++GL  +A ++F Q+++ GH PDV A+ A++EAY
Sbjct: 274 KLFNEMRSQKCKPNICTYTALVNAFAREGLCEKAEEIFEQLQEDGHEPDVYAYNALMEAY 333

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           + AG    A  +F  M   G  P+  +Y +++      A G   +  DAQ    EM   G
Sbjct: 334 SRAGFPYGAAEIFSLMQHMGCEPDRASYNIMVD-----AYGRGGLHEDAQAVFEEMKRLG 388

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + P   ++  +  A+ +A  V +   ++ ++   G  PD
Sbjct: 389 ITPTMKSHMLLLSAYSKAGDVAKCEDIVNELHESGLEPD 427



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +  A    GL  +A  +FA+++  G  P  + + A I+    AG  + A+ +F RM    
Sbjct: 189 LLKAYCTSGLLEKAEAIFAEMRKYGLPPSAIVYNAYIDGLMKAGNPQRAVEIFQRMKRDC 248

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  TY +LI        G A     A K   EM  +  +PN  TYTA+  AF R   
Sbjct: 249 CQPSTETYTLLIN-----LHGKASQSYMALKLFNEMRSQKCKPNICTYTALVNAFAREGL 303

Query: 213 VDEARGLLQQMKAKGFVPD 231
            ++A  + +Q++  G  PD
Sbjct: 304 CEKAEEIFEQLQEDGHEPD 322



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 59/269 (21%), Positives = 118/269 (43%), Gaps = 47/269 (17%)

Query: 6   ILRWLLHSPSPKRSLRITNTRVNATLQRSLSSSSDQ-----------PT--------KKY 46
           I +W+L+  S +  + I N  ++A  ++SL   ++            PT        K Y
Sbjct: 134 ICQWILYRSSFQSDVMIFNLVIDAYGRKSLYKMAETTYFELIEARCIPTEDTYALLLKAY 193

Query: 47  VNT--------------KSKLPPPYDPFKKVVD--EEPTDPRNLQEIFHKMRTEGL---T 87
             +              K  LPP    +   +D   +  +P+   EIF +M+ +     T
Sbjct: 194 CTSGLLEKAEAIFAEMRKYGLPPSAIVYNAYIDGLMKAGNPQRAVEIFQRMKRDCCQPST 253

Query: 88  NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMR 147
                + +   K   ++ AL+LF +++ +   P++  +TA++ A+A  G  ++A  +F +
Sbjct: 254 ETYTLLINLHGKASQSYMALKLFNEMRSQKCKPNICTYTALVNAFAREGLCEKAEEIFEQ 313

Query: 148 MLASGVAPNAYTYAVLIKGLAAAA--DGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFE 205
           +   G  P+ Y Y  L++  + A    G A+I       LM+ +  G  P+  +Y  + +
Sbjct: 314 LQEDGHEPDVYAYNALMEAYSRAGFPYGAAEIFS-----LMQHM--GCEPDRASYNIMVD 366

Query: 206 AFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
           A+ R    ++A+ + ++MK  G  P  K+
Sbjct: 367 AYGRGGLHEDAQAVFEEMKRLGITPTMKS 395



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 67/164 (40%), Gaps = 8/164 (4%)

Query: 71  PRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P    EIF  M+  G   +      M DA  + GL  +A  +F ++K  G  P + +H  
Sbjct: 339 PYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRGGLHEDAQAVFEEMKRLGITPTMKSHML 398

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           ++ AY+ AG   +   +   +  SG+ P+ +    ++        G     G  ++ L  
Sbjct: 399 LLSAYSKAGDVAKCEDIVNELHESGLEPDTFVLNSMLN-----LYGRLGQFGKMEEVLTA 453

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           M       +  TY  +   + RA   ++  GL Q + AK   PD
Sbjct: 454 MESGPYATDISTYNILINIYGRAGFFEKMEGLFQSLAAKNLKPD 497



 Score = 46.6 bits (109), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 36/168 (21%), Positives = 69/168 (41%), Gaps = 8/168 (4%)

Query: 75  QEIFHKMRTEGLT---NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           Q +F +M+  G+T    + + +  A SK G   +   +  ++ + G  PD     +++  
Sbjct: 378 QAVFEEMKRLGITPTMKSHMLLLSAYSKAGDVAKCEDIVNELHESGLEPDTFVLNSMLNL 437

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y   GQ  +   V   M +   A +  TY +LI        G A      +     +  K
Sbjct: 438 YGRLGQFGKMEEVLTAMESGPYATDISTYNILIN-----IYGRAGFFEKMEGLFQSLAAK 492

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
            ++P+  T+T+   A+ R +   +   + ++M   G  PD +  K  L
Sbjct: 493 NLKPDVVTWTSRLGAYSRKKLYTKCLEIFEEMIDAGCHPDGRTAKVLL 540


>gi|145326646|ref|NP_001077770.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332196072|gb|AEE34193.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 806

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 47/158 (29%), Positives = 82/158 (51%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           + +KM  +GL  + V    + + + K G T  AL L +++++    PDVV ++A+I+   
Sbjct: 248 LVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLC 307

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G   +A  +F  ML  G+APN +TY  +I G  +    +     DAQ+ L +M+ + +
Sbjct: 308 KDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWS-----DAQRLLRDMIEREI 362

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            P+  T+ A+  A V+  K+ EA  L  +M  +   PD
Sbjct: 363 NPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPD 400



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 76/167 (45%), Gaps = 8/167 (4%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           Q++F +M + G+  + +    +     ++    EAL+LF  I+      D VA+  +I  
Sbjct: 487 QDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHG 546

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
                +  EA  +F  +   GV P+  TY V+I G    +      + DA     +M   
Sbjct: 547 MCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKS-----AISDANVLFHKMKDN 601

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEA 238
           G  P+  TY  +    ++A ++D++  L+ +M++ GF  D   +K A
Sbjct: 602 GHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMA 648



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 53/225 (23%), Positives = 89/225 (39%), Gaps = 36/225 (16%)

Query: 43  TKKYVNTKSKL-----PPPYDPFKKVVDEEPTDPR--NLQEIFHKMRTEGLTNNAVK--- 92
           TK  +N  SK+      P    +  ++D    D    + Q +F +M  +G+  N      
Sbjct: 277 TKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNC 336

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M D     G   +A +L   + ++   PDV+   A+I A    G+  EA ++   ML   
Sbjct: 337 MIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRC 396

Query: 153 VAPNAYTYAVLIKG---------------LAAAAD-----------GNAKILGDAQKYLM 186
           + P+  TY  +I G               L A+ D             AK + +  + L 
Sbjct: 397 IFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLR 456

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           E+  +G+  N  TY  +   F     ++ A+ L Q+M + G  PD
Sbjct: 457 EISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPD 501



 Score = 50.4 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 11/119 (9%)

Query: 112 QIKDKGHM------PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           +  D  HM      PDVV    +I+ Y  A +  E +++   +   G+  N  TY  LI 
Sbjct: 416 RFDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIH 475

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           G     + NA     AQ    EM+  G+ P+  T   +   F   +K++EA  L + ++
Sbjct: 476 GFCEVDNLNA-----AQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQ 529



 Score = 45.4 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 40/152 (26%), Positives = 65/152 (42%), Gaps = 21/152 (13%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVI----------EAYASAGQGKE-----ALRVFMRMLA 150
           +L  F ++   G  PDVV    ++          EA A  G   E     A+ +F +M+ 
Sbjct: 160 SLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLEAVALFDQMVE 219

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
            G+ P   T+  LI GL        ++L +A   + +MVGKG+  +  TY  +     + 
Sbjct: 220 IGLTPVVITFNTLINGLCL----EGRVL-EAAALVNKMVGKGLHIDVVTYGTIVNGMCKM 274

Query: 211 QKVDEARGLLQQMKAKGFVPDEKAVKEALIDK 242
                A  LL +M+     PD   +  A+ID+
Sbjct: 275 GDTKSALNLLSKMEETHIKPD-VVIYSAIIDR 305



 Score = 43.9 bits (102), Expect = 0.059,   Method: Composition-based stats.
 Identities = 35/160 (21%), Positives = 61/160 (38%), Gaps = 21/160 (13%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A  LF ++   G  PD +    ++  +    + +EAL +F  +  S +  +   Y ++I 
Sbjct: 486 AQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIH 545

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G+   +      + +A      +   G+ P+  TY  +   F     + +A  L  +MK 
Sbjct: 546 GMCKGSK-----VDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKD 600

Query: 226 KGFVPDEKA--------VKEALIDK--------RGQGFRG 249
            G  PD           +K   IDK        R  GF G
Sbjct: 601 NGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSG 640


>gi|449531231|ref|XP_004172591.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like, partial [Cucumis sativus]
          Length = 602

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 73/155 (47%), Gaps = 8/155 (5%)

Query: 81  MRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ 137
           M   G+  N V    + D   K+    EA +LF  ++ KG  P VV + A IE Y   G+
Sbjct: 424 MEERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGK 483

Query: 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA 197
            +EA ++   M   G+ P+ YTY  LI G    A GN   +  A +   EM   G+  N 
Sbjct: 484 MEEAYKLINEMQERGLMPDTYTYTSLIDG--ERASGN---VDRALELFNEMPQLGLNRNV 538

Query: 198 GTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
            TYT +     +  + DEA  L  +M  +G VPD+
Sbjct: 539 VTYTVIISGLSKDGRADEAFKLYDEMNKEGIVPDD 573



 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 81/171 (47%), Gaps = 8/171 (4%)

Query: 79  HKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASA 135
           + M+++G+  N V    + D   K G+  EAL+L   ++ KG   D      +   +  +
Sbjct: 352 NDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRS 411

Query: 136 GQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP 195
            + +EA R+ + M   GVAPN  ++++LI       +       +A++    M  KG  P
Sbjct: 412 NRREEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQN-----FAEARRLFKVMEKKGKAP 466

Query: 196 NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
           +  TY A  E + +  K++EA  L+ +M+ +G +PD       +  +R  G
Sbjct: 467 SVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLIDGERASG 517



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 73/168 (43%), Gaps = 8/168 (4%)

Query: 67  EPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVV 123
           E  D   + EI   M    +  N      + +  S+     EA +LF ++  KG  PDV 
Sbjct: 235 EIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVY 294

Query: 124 AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQK 183
            +T++I      G  K A  +F  M    + PNAYTY  LI G   A +  A     A+ 
Sbjct: 295 IYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKA-----AEM 349

Query: 184 YLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            + +M  KG+  N   +  + + + +   +DEA  L   M+ KGF  D
Sbjct: 350 MVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEID 397



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 68/159 (42%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVKMFD---ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F   R +G   +    F+   AL + G     ++   Q+ D G    V + TAV++  
Sbjct: 139 EVFDYARKKGFEIDERSCFEFLLALKRSGNMELCVEFLRQMVDSGIEIRVCSWTAVVDGL 198

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+   A  +   ++  G  P+  TY  L+ G     D     +G   + L  M    
Sbjct: 199 CKKGEVVRAKALMDELVCKGFKPSVITYNTLLNGYIEIKD-----VGGVNEILSLMEKNV 253

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +  N  TYT + E + R+ K++EA  L  +M  KG  PD
Sbjct: 254 VDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPD 292



 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 71/157 (45%), Gaps = 8/157 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M    L  NA     + +   K G    A  +   ++ KG   + V    +++ Y 
Sbjct: 315 LFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMDGYC 374

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G   EALR+   M   G   +A+T  ++  G   +   N +   +A++ L+ M  +G+
Sbjct: 375 KKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRS---NRR--EEAKRLLLTMEERGV 429

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
            PN  +++ + + + + Q   EAR L + M+ KG  P
Sbjct: 430 APNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAP 466


>gi|297606902|ref|NP_001059180.2| Os07g0213300 [Oryza sativa Japonica Group]
 gi|215767816|dbj|BAH00045.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255677604|dbj|BAF21094.2| Os07g0213300 [Oryza sativa Japonica Group]
          Length = 677

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 90/184 (48%), Gaps = 10/184 (5%)

Query: 50  KSKLPPPYDPFKKVVDEEPT--DPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTH 104
           ++K PP    +  ++          N + IF  M  EG+  N V    +  A +  G+  
Sbjct: 181 RTKCPPDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHR 240

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EAL +F  IK  G  PD+V++T+++ AY  + Q ++A  VF +M  +   PN  +Y  LI
Sbjct: 241 EALAIFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALI 300

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
                 A G+A +L +A   L EM   G++P+  + + +  A  R +++     +L+  +
Sbjct: 301 D-----AYGSAGMLKEAVGLLHEMEKDGIQPDVVSISTLLAACGRCRQITRIETILEAAR 355

Query: 225 AKGF 228
           ++G 
Sbjct: 356 SRGI 359



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 93/192 (48%), Gaps = 26/192 (13%)

Query: 69  TDPRNLQEIFHKMRTEGLTNNAVKMFDALSK-------DGLTHEALQ----LFAQIKD-- 115
           +D   L  I H +   G    A+++F+++ +       D +T+ ++     ++ Q+++  
Sbjct: 149 SDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTYTSIMHSYCIYGQVENCK 208

Query: 116 --------KGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
                   +G  P++VA+ +++ AYAS G  +EAL +F  +  +G+ P+  +Y  L+   
Sbjct: 209 AIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDIVSYTSLLNAY 268

Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
             +A         A++   +M     +PN  +Y A+ +A+  A  + EA GLL +M+  G
Sbjct: 269 GRSAQPE-----KAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEMEKDG 323

Query: 228 FVPDEKAVKEAL 239
             PD  ++   L
Sbjct: 324 IQPDVVSISTLL 335



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/199 (23%), Positives = 81/199 (40%), Gaps = 43/199 (21%)

Query: 71  PRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVV---- 123
           P   +E+F+KM+      N V    + DA    G+  EA+ L  +++  G  PDVV    
Sbjct: 274 PEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEMEKDGIQPDVVSIST 333

Query: 124 -------------------------------AHTAVIEAYASAGQGKEALRVFMRMLASG 152
                                          A+ + I++Y S G  ++AL ++  M  S 
Sbjct: 334 LLAACGRCRQITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDYEKALELYTSMRESN 393

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V P+A TY +LI G +           ++ ++  +MV   +      Y+++  ++++  K
Sbjct: 394 VKPDAVTYNILISGSSKLGK-----YTESLRFFEDMVDSKVSSTKEVYSSLIYSYIKQGK 448

Query: 213 VDEARGLLQQMKAKGFVPD 231
           + EA      MK  G  PD
Sbjct: 449 LSEAESTFSSMKKSGCFPD 467



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 71/162 (43%), Gaps = 10/162 (6%)

Query: 74  LQEIFHKMRTEGLTNNAVKMFDALSKDGLT----HEALQLFAQIKDKGHMPDVVAHTAVI 129
           ++ I    R+ G+  N V  +++  K  L+     +AL+L+  +++    PD V +  +I
Sbjct: 347 IETILEAARSRGIDLNTVA-YNSGIKSYLSFGDYEKALELYTSMRESNVKPDAVTYNILI 405

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
              +  G+  E+LR F  M+ S V+     Y+ LI             L +A+     M 
Sbjct: 406 SGSSKLGKYTESLRFFEDMVDSKVSSTKEVYSSLIYSYIKQGK-----LSEAESTFSSMK 460

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             G  P+  TYT + +A+        A  L ++M+  G  PD
Sbjct: 461 KSGCFPDVLTYTTLIQAYNAGGGWKRAWDLFKEMEVNGIPPD 502



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 94/218 (43%), Gaps = 20/218 (9%)

Query: 25  TRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKKVVDEEPTDPRNLQEIFHKMRTE 84
           TR+   L+ + S   D  T  Y N+  K    +  ++K +           E++  MR  
Sbjct: 345 TRIETILEAARSRGIDLNTVAY-NSGIKSYLSFGDYEKAL-----------ELYTSMRES 392

Query: 85  GLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEA 141
            +  +AV    +    SK G   E+L+ F  + D         ++++I +Y   G+  EA
Sbjct: 393 NVKPDAVTYNILISGSSKLGKYTESLRFFEDMVDSKVSSTKEVYSSLIYSYIKQGKLSEA 452

Query: 142 LRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYT 201
              F  M  SG  P+  TY  LI+  A  A G  K   D  K   EM   G+ P+A   +
Sbjct: 453 ESTFSSMKKSGCFPDVLTYTTLIQ--AYNAGGGWKRAWDLFK---EMEVNGIPPDAIICS 507

Query: 202 AVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
           ++ EAF +  + +    L++ MK K    ++K+  E +
Sbjct: 508 SLMEAFNKGGEPERVLQLMEFMKKKSIPLNQKSYFEII 545



 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 66/146 (45%), Gaps = 10/146 (6%)

Query: 88  NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMR 147
           NN +   +A    G   +AL+L  ++ + G  PD+V H  V+ A  +  Q  +A+  F  
Sbjct: 85  NNVI---NACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQYSKAISYFEI 141

Query: 148 MLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR--PNAGTYTAVFE 205
           M  + V  + +T  ++I  L           G+A +    M  +  +  P+  TYT++  
Sbjct: 142 MKGANVTSDTFTLNIIIHCLVKIGQ-----CGEAIELFNSMRERRTKCPPDVVTYTSIMH 196

Query: 206 AFVRAQKVDEARGLLQQMKAKGFVPD 231
           ++    +V+  + +   M A+G  P+
Sbjct: 197 SYCIYGQVENCKAIFDLMVAEGVKPN 222



 Score = 46.2 bits (108), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 5/127 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +A  LF ++++    PD   + ++I A++ AGQ + A+ +   ML + + P   TY  +I
Sbjct: 29  QARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMEDMLRAAIPPTRTTYNNVI 88

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
               AA  GN K    A +   +M   G+ P+  T+  V  A     +  +A    + MK
Sbjct: 89  NACGAA--GNWK---KALELCKKMTENGVGPDLVTHNIVLSALKNGAQYSKAISYFEIMK 143

Query: 225 AKGFVPD 231
                 D
Sbjct: 144 GANVTSD 150



 Score = 40.4 bits (93), Expect = 0.67,   Method: Compositional matrix adjust.
 Identities = 30/134 (22%), Positives = 54/134 (40%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +  A S+ G    A+ +   +      P    +  VI A  +AG  K+AL +  +M  +G
Sbjct: 52  LIHAHSRAGQWRWAINIMEDMLRAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTENG 111

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V P+  T+ +++  L   A  +  I      Y   M G  +  +  T   +    V+  +
Sbjct: 112 VGPDLVTHNIVLSALKNGAQYSKAI-----SYFEIMKGANVTSDTFTLNIIIHCLVKIGQ 166

Query: 213 VDEARGLLQQMKAK 226
             EA  L   M+ +
Sbjct: 167 CGEAIELFNSMRER 180


>gi|147767652|emb|CAN77908.1| hypothetical protein VITISV_033177 [Vitis vinifera]
          Length = 1563

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 48/157 (30%), Positives = 76/157 (48%), Gaps = 9/157 (5%)

Query: 78   FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
            F++M   G   + +    +  +LSK     EA   F  +KD+   PDVV +T+++  +  
Sbjct: 1236 FNRMEDYGCKPDKIAFSVVISSLSKKRRAIEAQSFFDSLKDRFE-PDVVVYTSLVHGWCR 1294

Query: 135  AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            AG   EA RVF  M  +G+ PN YTY+++I  L  +       +  A     EM+  G  
Sbjct: 1295 AGNISEAERVFGEMKMAGIXPNVYTYSIVIDALCRSGQ-----ITRAHDVFSEMIDVGCD 1349

Query: 195  PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            PNA T+  +    V+A + ++   +  QMK  G  PD
Sbjct: 1350 PNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPD 1386



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 40/153 (26%), Positives = 75/153 (49%), Gaps = 9/153 (5%)

Query: 75   QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            + +F +M+  G+  N      + DAL + G    A  +F+++ D G  P+ +    ++  
Sbjct: 1302 ERVFGEMKMAGIXPNVYTYSIVIDALCRSGQITRAHDVFSEMIDVGCDPNAITFNNLMRV 1361

Query: 132  YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
            +  AG+ ++ L+V+ +M   G  P+A TY  LI+  +   D N   L +A K ++  V K
Sbjct: 1362 HVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIE--SHCRDDN---LEEAVK-ILNSVKK 1415

Query: 192  GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            G   NA ++  +F    +   V+ A  +  +MK
Sbjct: 1416 GCNLNASSFNPIFGCISKLGDVNSAHRMFAKMK 1448



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/138 (26%), Positives = 67/138 (48%), Gaps = 6/138 (4%)

Query: 93   MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
            +F  +SK G  + A ++FA++KD    P+ V +  ++  +A        L++   M  + 
Sbjct: 1427 IFGCISKLGDVNSAHRMFAKMKDLKCRPNTVTYNILMRMFADKKSTDMVLKLRKEMDENE 1486

Query: 153  VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV-GKGMRPNAGTYTAVFEAFVRAQ 211
            + PNA TY VLI         N     +A  +  EM+  K +RP+   Y  V +   +A 
Sbjct: 1487 IEPNANTYRVLISTFCGIGHWN-----NAYSFFKEMIEEKCLRPSLPVYEMVLQQLRKAG 1541

Query: 212  KVDEARGLLQQMKAKGFV 229
            ++ +   L+++M  +GFV
Sbjct: 1542 QLKKHEELVEKMVNRGFV 1559



 Score = 40.4 bits (93), Expect = 0.67,   Method: Composition-based stats.
 Identities = 40/186 (21%), Positives = 68/186 (36%), Gaps = 42/186 (22%)

Query: 75   QEIFHKMRTEGLTNNAVKMFDALS---KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
             ++F +M   G   NA+   + +    K G T + LQ++ Q+K  G  PD + +  +IE+
Sbjct: 1337 HDVFSEMIDVGCDPNAITFNNLMRVHVKAGRTEKVLQVYNQMKRLGCPPDAITYNFLIES 1396

Query: 132  YASAGQGKEAL----------------------------------RVFMRMLASGVAPNA 157
            +      +EA+                                  R+F +M      PN 
Sbjct: 1397 HCRDDNLEEAVKILNSVKKGCNLNASSFNPIFGCISKLGDVNSAHRMFAKMKDLKCRPNT 1456

Query: 158  YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
             TY +L++  A     + K      K   EM    + PNA TY  +   F      + A 
Sbjct: 1457 VTYNILMRMFA-----DKKSTDMVLKLRKEMDENEIEPNANTYRVLISTFCGIGHWNNAY 1511

Query: 218  GLLQQM 223
               ++M
Sbjct: 1512 SFFKEM 1517


>gi|125524465|gb|EAY72579.1| hypothetical protein OsI_00445 [Oryza sativa Indica Group]
          Length = 1014

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 86/183 (46%), Gaps = 10/183 (5%)

Query: 55  PPYDPFKKVVDEEPTDPR--NLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQL 109
           P    +  ++D+   + R  +   +F +M   GL  N V    +  AL K G+  +AL L
Sbjct: 336 PNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCL 395

Query: 110 FAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169
           F +++DKG    V  + ++I  Y   G    A  +   M+  G+ P A +Y+ LI GL  
Sbjct: 396 FDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCR 455

Query: 170 AADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFV 229
             D     L  A +   EM  +G+  N  T+TA+   F + +K+DEA  L  +M     +
Sbjct: 456 NGD-----LSSAMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVI 510

Query: 230 PDE 232
           P+E
Sbjct: 511 PNE 513



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 67/142 (47%), Gaps = 5/142 (3%)

Query: 89  NAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRM 148
           N   M D L K  L  EA  L  ++ D G +P+V A+ A+I+      +  +A R+F  M
Sbjct: 305 NCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEM 364

Query: 149 LASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFV 208
              G+ PN  TYA+LI  L         ++ DA     +M  KG++     Y ++   + 
Sbjct: 365 AGRGLEPNEVTYAILIHALCKRG-----MIEDALCLFDKMRDKGIKVTVYPYNSLINGYC 419

Query: 209 RAQKVDEARGLLQQMKAKGFVP 230
           +   +D ARGLL  M  +G  P
Sbjct: 420 KQGSLDRARGLLSGMVKEGLTP 441



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 74/158 (46%), Gaps = 9/158 (5%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M+ +G+  + +    M DALSK+    +AL  + Q+   G+ P+ V HT +I    
Sbjct: 640 LFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVIDGYSPNTVTHTVLINNLC 699

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            +G    A  +   MLA  V PN +TY   +   A   D       +  K L   + +G 
Sbjct: 700 KSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGD------MEKAKDLHSAMLQGH 753

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             +  ++  + +   +A K+ EA  L++++   GF PD
Sbjct: 754 LASIVSFNILIKGLCKAGKIQEAIDLMRKITESGFSPD 791



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 73/161 (45%), Gaps = 8/161 (4%)

Query: 70  DPRNLQEIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D  +  E+  +M   G+  N      + +   KD    EA +LF ++ D   +P+ V   
Sbjct: 458 DLSSAMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFN 517

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
            +IE Y   G  ++A +++ +M+  G+ P+ YTY  LI GL   + G +K    A +++ 
Sbjct: 518 VMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTS-GVSK----ANEFVA 572

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
           ++       N  + TA+     R  +  E   L  +M  +G
Sbjct: 573 DLENSYAVLNNFSLTALLYGLFREGRFTETYHLWDEMAVRG 613



 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 69/147 (46%), Gaps = 8/147 (5%)

Query: 81  MRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ 137
           M  EGLT  A     +   L ++G    A++L  ++ ++G   +    TA+I  +    +
Sbjct: 434 MVKEGLTPTAASYSPLIAGLCRNGDLSSAMELHREMAERGIAWNNYTFTALINGFCKDKK 493

Query: 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA 197
             EA R+F +M+ S V PN  T+ V+I+G      GN +    A +   +MV  G++P+ 
Sbjct: 494 MDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLV--GNIR---KAFQLYDQMVEMGLKPDN 548

Query: 198 GTYTAVFEAFVRAQKVDEARGLLQQMK 224
            TY ++         V +A   +  ++
Sbjct: 549 YTYRSLISGLCLTSGVSKANEFVADLE 575



 Score = 53.5 bits (127), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 5/112 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L K G   EA+ L  +I + G  PD ++++ +I      G   +A  ++  ML  G
Sbjct: 763 LIKGLCKAGKIQEAIDLMRKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKG 822

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVF 204
           + P+   Y + I+      + + K LG        M+  G++PN  TY A+ 
Sbjct: 823 LKPDVVAYNIFIRWCNVHGESD-KALG----IYTNMIRSGVQPNWDTYRALL 869



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 60/128 (46%), Gaps = 13/128 (10%)

Query: 116 KGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNA 175
           +GH+  +V+   +I+    AG+ +EA+ +  ++  SG +P+  +Y+ +I  L    D N 
Sbjct: 751 QGHLASIVSFNILIKGLCKAGKIQEAIDLMRKITESGFSPDCISYSTIIHELCKMGDINK 810

Query: 176 KILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV----DEARGLLQQMKAKGFVPD 231
                A +   EM+ KG++P+   Y      F+R   V    D+A G+   M   G  P+
Sbjct: 811 -----AFELWNEMLYKGLKPDVVAYN----IFIRWCNVHGESDKALGIYTNMIRSGVQPN 861

Query: 232 EKAVKEAL 239
               +  L
Sbjct: 862 WDTYRALL 869



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 3/113 (2%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++  K+   G + + +    +   L K G  ++A +L+ ++  KG  PDVVA+   I   
Sbjct: 778 DLMRKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWC 837

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185
              G+  +AL ++  M+ SGV PN  TY  L+ G++     +       ++Y+
Sbjct: 838 NVHGESDKALGIYTNMIRSGVQPNWDTYRALLSGISLMLHYDFSCFRGTKQYI 890



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 77/175 (44%), Gaps = 21/175 (12%)

Query: 69  TDPRNL---QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDV 122
            + RNL   + +  +M +EG+  +AV    +   L K+    EA+++   + + G   D 
Sbjct: 209 CESRNLDGARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADE 268

Query: 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI-----KGLAAAADGNAKI 177
           V +  ++  +    + + ALR+   M+  G  P+    + +I     K L   A   A  
Sbjct: 269 VTYRTLVYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACK 328

Query: 178 LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           LGD           GM PN   Y A+ +   + ++ D+A  L ++M  +G  P+E
Sbjct: 329 LGDL----------GMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNE 373



 Score = 45.4 bits (106), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 5/127 (3%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A  LF ++   G   D   +TA I AY  +     A  + +RM + GV  +A  Y VL+ 
Sbjct: 182 ARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLVVRMESEGVKASAVPYNVLMY 241

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           GL      N ++  +A +    MV  G+  +  TY  +   F R ++++ A  +   M  
Sbjct: 242 GLCK----NMRV-QEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMIR 296

Query: 226 KGFVPDE 232
            GFVP E
Sbjct: 297 LGFVPSE 303



 Score = 42.7 bits (99), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 30/137 (21%), Positives = 60/137 (43%), Gaps = 5/137 (3%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L ++G   E   L+ ++  +G   D+V+ T ++ A       +++  +F  M   GV P
Sbjct: 592 GLFREGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKP 651

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +   Y  +I  L+   +     +  A     +MV  G  PN  T+T +     ++  +  
Sbjct: 652 DDIFYTCMIDALSKEEN-----MIQALNCWDQMVIDGYSPNTVTHTVLINNLCKSGYLGS 706

Query: 216 ARGLLQQMKAKGFVPDE 232
           A  L ++M A   +P++
Sbjct: 707 AELLCKEMLAGNVLPNK 723


>gi|341605745|gb|AEK82975.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 75/146 (51%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+G  +E   +F  +  KG  P+V  +T +I+ YA +G  ++A+R+  RM+  G  P
Sbjct: 26  GLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKP 85

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY+V++ GL      N ++  +A  Y       G   N+  Y+++ +   +A ++DE
Sbjct: 86  DVVTYSVVVNGLCK----NGRV-EEALDYFQTCRXNGFAINSMFYSSLIDGLGKAGRIDE 140

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      ALID
Sbjct: 141 AERLFEEMSEKGCTRDSYCYN-ALID 165



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 71/134 (52%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ D+G  PDVV ++ V+      G+ +EAL  F     +G
Sbjct: 58  LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRXNG 117

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            A N+  Y+ LI GL     G A  + +A++   EM  KG   ++  Y A+ +A  +  K
Sbjct: 118 FAINSMFYSSLIDGL-----GKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGK 172

Query: 213 VDEARGLLQQMKAK 226
           VDEA  L ++M+ +
Sbjct: 173 VDEAMTLFKRMEEE 186



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 62/143 (43%), Gaps = 6/143 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
            + L+ ++ +KG        + VI      G+  E   VF  M+  G  PN   Y VLI 
Sbjct: 1   CVALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLID 60

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G A +       + DA + L  M+ +G +P+  TY+ V     +  +V+EA    Q  + 
Sbjct: 61  GYAKSGS-----VEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRX 115

Query: 226 KGFVPDEKAVKEALIDKRGQGFR 248
            GF  +      +LID  G+  R
Sbjct: 116 NGFAIN-SMFYSSLIDGLGKAGR 137


>gi|341605765|gb|AEK82985.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605767|gb|AEK82986.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605769|gb|AEK82987.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605771|gb|AEK82988.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 76/146 (52%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+G  +E   +F  +  KG  P+V  +T +I+ YA +G  ++A+R+  RM+  G  P
Sbjct: 26  GLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKP 85

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY+V++ GL      N ++  +A  Y       G+  N+  Y+++ +   +A ++DE
Sbjct: 86  DVVTYSVVVNGLCK----NGRV-EEALDYFQTCRFNGLAINSIFYSSLIDGLGKAGRIDE 140

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      ALID
Sbjct: 141 AERLFEEMSEKGCTRDSYCYN-ALID 165



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 72/134 (53%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ D+G  PDVV ++ V+      G+ +EAL  F     +G
Sbjct: 58  LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNG 117

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +A N+  Y+ LI GL     G A  + +A++   EM  KG   ++  Y A+ +A  +  K
Sbjct: 118 LAINSIFYSSLIDGL-----GKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGK 172

Query: 213 VDEARGLLQQMKAK 226
           VDEA  L ++M+ +
Sbjct: 173 VDEAMTLFKRMEEE 186



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 6/143 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
            + L+ ++ +KG        + VI      G+  E   VF  M+  G  PN   Y VLI 
Sbjct: 1   CVALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLID 60

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G A +       + DA + L  M+ +G +P+  TY+ V     +  +V+EA    Q  + 
Sbjct: 61  GYAKSGS-----VEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRF 115

Query: 226 KGFVPDEKAVKEALIDKRGQGFR 248
            G   +      +LID  G+  R
Sbjct: 116 NGLAIN-SIFYSSLIDGLGKAGR 137


>gi|147797621|emb|CAN62945.1| hypothetical protein VITISV_002230 [Vitis vinifera]
          Length = 912

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 69/138 (50%), Gaps = 5/138 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   K G   EA++   ++  +   P+V+ + A+I      G   EA R+  RM  +G
Sbjct: 327 LIDGYCKRGELEEAMKYMEEMVSRNCEPNVLTYNAIIYGLCLNGNVDEAKRMMTRMRLNG 386

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +  N  T+  ++KGL          L DA ++L EMVG GM  +A  Y  V   + +  K
Sbjct: 387 LKDNVATHTSILKGLCVVGK-----LDDAARHLKEMVGLGMEADAKAYGVVVNEYCKIGK 441

Query: 213 VDEARGLLQQMKAKGFVP 230
            D+A  LL++MK++G  P
Sbjct: 442 ADDAISLLKEMKSRGINP 459



 Score = 50.1 bits (118), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 59/132 (44%), Gaps = 4/132 (3%)

Query: 98  SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA 157
            K G   +A+ L  ++K +G  P V +  AV      +G+  +A  +  +M   G  PN 
Sbjct: 437 CKIGKADDAISLLKEMKSRGINPSVSSFNAVFRILVESGKTDKAGLILRQMKQLGCTPNF 496

Query: 158 YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
            +Y+ +I GL  A       + + ++++ +M   G   +A  Y+ + + +      D A 
Sbjct: 497 LSYSTVIDGLCKAKGR----MHEVEEFVDDMCRNGHHLDASMYSWLVKGYCEDGNADMAM 552

Query: 218 GLLQQMKAKGFV 229
            L  +M   G+V
Sbjct: 553 RLFCEMLDMGYV 564



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 6/114 (5%)

Query: 60  FKKVVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSK-DGLTHEALQLFAQIKD 115
           F+ +V+   TD   L  I  +M+  G T N +    + D L K  G  HE  +    +  
Sbjct: 468 FRILVESGKTDKAGL--ILRQMKQLGCTPNFLSYSTVIDGLCKAKGRMHEVEEFVDDMCR 525

Query: 116 KGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169
            GH  D   ++ +++ Y   G    A+R+F  ML  G   N  ++   +KGL+A
Sbjct: 526 NGHHLDASMYSWLVKGYCEDGNADMAMRLFCEMLDMGYVINLESFLAFVKGLSA 579


>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
          Length = 878

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 84/193 (43%), Gaps = 43/193 (22%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT------- 126
           +F KMR  GL  N V    + D L K G   +A+  F Q+ D+G  P+++ +T       
Sbjct: 398 VFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLC 457

Query: 127 ----------------------------AVIEAYASAGQGKEALRVFMRMLASGVAPNAY 158
                                       ++I+++   G+  E+ ++F  M+  GV P+  
Sbjct: 458 TCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDII 517

Query: 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218
           TY  LI G   A       + +A K L  MV  G++P+  TY  +   + R  ++D+A  
Sbjct: 518 TYNTLIDGCCLAGK-----MDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALA 572

Query: 219 LLQQMKAKGFVPD 231
           L ++M + G  P+
Sbjct: 573 LFKEMVSSGVSPN 585



 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 75/158 (47%), Gaps = 8/158 (5%)

Query: 78  FHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           +H+M   G+  + V    +  AL K     +A+++   +   G MPD + + +++  Y S
Sbjct: 224 YHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCS 283

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
           +GQ KEA+    +M + GV PN  TY+ L+  L    +G +    +A+K    M  +G+ 
Sbjct: 284 SGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYL--CKNGRST---EARKIFDSMTKRGLE 338

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           P+  TY  + + +     + E   LL  M   G  PD 
Sbjct: 339 PDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDH 376



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 11/147 (7%)

Query: 88  NNAVKMFDALSKDGLTHEALQLFAQIKDK---GHMPDVVAHTAVIEAYASAGQGKEALRV 144
           NN +K    L  +  + EAL+L   + D    G  PDVV++  V+  +   G   +A   
Sbjct: 167 NNLLK---GLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYST 223

Query: 145 FMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVF 204
           +  ML  G+ P+  TY+ +I  L       A+ +  A + L  MV  G+ P+  TY ++ 
Sbjct: 224 YHEMLDRGILPDVVTYSSIIAALC-----KAQAMDKAMEVLNTMVKNGVMPDCMTYNSIL 278

Query: 205 EAFVRAQKVDEARGLLQQMKAKGFVPD 231
             +  + +  EA G L++M++ G  P+
Sbjct: 279 HGYCSSGQPKEAIGTLKKMRSDGVEPN 305



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 71/139 (51%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +   K+G + +A   + ++ D+G +PDVV ++++I A   A    +A+ V   M+ +G
Sbjct: 207 VLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNG 266

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V P+  TY  ++ G  ++  G  K   +A   L +M   G+ PN  TY+++     +  +
Sbjct: 267 VMPDCMTYNSILHGYCSS--GQPK---EAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGR 321

Query: 213 VDEARGLLQQMKAKGFVPD 231
             EAR +   M  +G  PD
Sbjct: 322 STEARKIFDSMTKRGLEPD 340



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 71/156 (45%), Gaps = 8/156 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+  +M   G+  N +    + D+  K+G   E+ +LF  +   G  PD++ +  +I+ 
Sbjct: 466 EELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDG 525

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              AG+  EA ++   M++ GV P+  TY  LI G    +      + DA     EMV  
Sbjct: 526 CCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSR-----MDDALALFKEMVSS 580

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
           G+ PN  TY  + +     ++   A+ L   +   G
Sbjct: 581 GVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSG 616



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 77/164 (46%), Gaps = 8/164 (4%)

Query: 71  PRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P+       KMR++G+  N V    + + L K+G + EA ++F  +  +G  PD+  +  
Sbjct: 287 PKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRT 346

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           +++ YA+ G   E   +   M+ +G+ P+ + + +LI   A     +  +L        +
Sbjct: 347 LLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAML-----VFSK 401

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           M   G+ PN   Y  V +   ++  VD+A    +QM  +G  P+
Sbjct: 402 MRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPN 445



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 68/139 (48%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +  A +K     +A+ +F++++  G  P+VV +  VI+    +G   +A+  F +M+  G
Sbjct: 382 LICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEG 441

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN   Y  LI GL      +      A++ ++EM+ +G+  N   + ++ ++  +  +
Sbjct: 442 LTPNIIVYTSLIHGLCTCDKWDK-----AEELILEMLDRGICLNTIFFNSIIDSHCKEGR 496

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V E+  L   M   G  PD
Sbjct: 497 VIESEKLFDLMVRIGVKPD 515



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 76/169 (44%), Gaps = 10/169 (5%)

Query: 60  FKKVVDEEPTDPRNLQ--EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIK 114
           F  ++D    + R ++  ++F  M   G+  + +    + D     G   EA +L A + 
Sbjct: 484 FNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMV 543

Query: 115 DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174
             G  PD+V +  +I  Y    +  +AL +F  M++SGV+PN  TY ++++GL      +
Sbjct: 544 SVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLF-----H 598

Query: 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
            +    A++  + +   G +    TY  +     +    DEA  + Q +
Sbjct: 599 TRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNL 647



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 67/143 (46%), Gaps = 9/143 (6%)

Query: 93  MFDALSKDGLTHEALQL-FAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRML-- 149
           +   L  D  T +A+ +   ++ + G +PDV ++  +++      + +EAL +   M   
Sbjct: 133 LLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADD 192

Query: 150 -ASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFV 208
              G  P+  +Y  ++ G     D +      A     EM+ +G+ P+  TY+++  A  
Sbjct: 193 RGGGSPPDVVSYNTVLNGFFKEGDSDK-----AYSTYHEMLDRGILPDVVTYSSIIAALC 247

Query: 209 RAQKVDEARGLLQQMKAKGFVPD 231
           +AQ +D+A  +L  M   G +PD
Sbjct: 248 KAQAMDKAMEVLNTMVKNGVMPD 270



 Score = 39.7 bits (91), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 29/163 (17%), Positives = 63/163 (38%), Gaps = 8/163 (4%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M + G++ N +    +   L     T  A +L+  I   G   ++  +  ++    
Sbjct: 573 LFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLC 632

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
                 EALR+F  +  + +     T+ ++I  L          + +A+         G+
Sbjct: 633 KNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGR-----MDEAKDLFAAHSANGL 687

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK 236
            P+  TY+ + E  +    ++E   L   M+  G   D + + 
Sbjct: 688 VPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLN 730


>gi|255557743|ref|XP_002519901.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540947|gb|EEF42505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 777

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 53/166 (31%), Positives = 79/166 (47%), Gaps = 11/166 (6%)

Query: 73  NLQEIFH---KMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           N++E F     MR+ G+   +     +   LS  GL   A QL  +++ +G  P+VV +T
Sbjct: 597 NMREAFRLRDDMRSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYT 656

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
           A+I  Y   GQ  +   +   M  + V PN  TY ++I G      GN K    A K L 
Sbjct: 657 ALIGGYCKLGQMHKVDSILQEMSINNVHPNKITYTIMINGHCKL--GNMKA---AAKLLN 711

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           EM  KG+ P+A TY A+   F +  K++EA  +   M   G   D+
Sbjct: 712 EMAQKGIVPDAVTYNALTNGFCKEGKMEEALKVCDLMSTGGISLDD 757



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/149 (28%), Positives = 77/149 (51%), Gaps = 6/149 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +  +L K      + Q+F  +   G  PDV   + ++ A+ + G+  +A+ +F +M   G
Sbjct: 168 LLSSLVKANEVKMSYQVFDIMCHCGVTPDVYLFSTMVNAFCTGGRVDDAIELFRKMEKVG 227

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           VAPN  TY  +I GL      N + L +A ++  +M  + ++P+  TY  +    V+ ++
Sbjct: 228 VAPNVVTYNNIIHGLCK----NGR-LDEAFQFKEKMEKERVKPSLVTYGVLINGLVKLER 282

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALID 241
            DEA  +L++M  +G+ P+   V   LID
Sbjct: 283 FDEANCILKEMSDRGYAPN-NVVYNTLID 310



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 40/139 (28%), Positives = 69/139 (49%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L ++G   EA++L+ ++ +KG   + V   A+I     AG  +EA ++   ML  G
Sbjct: 413 LVSGLCQNGKQSEAIELWYRLLEKGFAANTVTSNALIHGLCEAGSKEEAAKLLKEMLERG 472

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +  ++ +Y  LI  LA   +G  +   +  K   EMV +G++P+  TY  +        K
Sbjct: 473 LVLDSISYNTLI--LACCKEGKVE---EGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGK 527

Query: 213 VDEARGLLQQMKAKGFVPD 231
           ++EA GL  + K  G  PD
Sbjct: 528 IEEAGGLWHECKKNGNFPD 546



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 37/140 (26%), Positives = 65/140 (46%), Gaps = 5/140 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M D   K     E  +LF ++       + V +  +I AY   G  +EA R+   M + G
Sbjct: 553 MIDGYCKANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRLRDDMRSRG 612

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +   + TY+ LI GL+     N  ++  A + L EM  +G+ PN   YTA+   + +  +
Sbjct: 613 IPQTSATYSSLIHGLS-----NIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQ 667

Query: 213 VDEARGLLQQMKAKGFVPDE 232
           + +   +LQ+M      P++
Sbjct: 668 MHKVDSILQEMSINNVHPNK 687



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M +A    G   +A++LF +++  G  P+VV +  +I      G+  EA +   +M    
Sbjct: 203 MVNAFCTGGRVDDAIELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKER 262

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V P+  TY VLI GL        +   +A   L EM  +G  PN   Y  + + + R   
Sbjct: 263 VKPSLVTYGVLINGLV-----KLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGN 317

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +  A  +   M + G  P+
Sbjct: 318 ISTALQIRDDMISNGISPN 336



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/128 (26%), Positives = 64/128 (50%), Gaps = 5/128 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA  +  ++ D+G+ P+ V +  +I+ Y   G    AL++   M+++G++PN+ T   LI
Sbjct: 285 EANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQIRDDMISNGISPNSVTCNSLI 344

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           +G   +       +  A+  L EM+  G   N GT+T+V        + D A   + +M 
Sbjct: 345 QGYCKSNQ-----MEHAEHLLEEMLTGGGVINQGTFTSVIHRLCLKCRFDSALLFIMEML 399

Query: 225 AKGFVPDE 232
            + F P++
Sbjct: 400 LRNFKPND 407



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 40/168 (23%), Positives = 77/168 (45%), Gaps = 9/168 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++  +M   GL  +++    +  A  K+G   E  +L  ++  +G  PD+  +  ++   
Sbjct: 463 KLLKEMLERGLVLDSISYNTLILACCKEGKVEEGFKLKEEMVRRGIQPDMYTYNMLLHGL 522

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
            + G+ +EA  ++     +G  P+AYTY ++I G        A  + + +K   EMV   
Sbjct: 523 CNMGKIEEAGGLWHECKKNGNFPDAYTYGIMIDGYC-----KANRVEEGEKLFQEMVTMK 577

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
           +  NA  Y  +  A+     + EA  L   M+++G +P   A   +LI
Sbjct: 578 IEQNAVVYGTLIRAYCENGNMREAFRLRDDMRSRG-IPQTSATYSSLI 624



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 5/106 (4%)

Query: 126 TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185
           T ++      G+  EA+ ++ R+L  G A N  T   LI GL  A         +A K L
Sbjct: 411 TLLVSGLCQNGKQSEAIELWYRLLEKGFAANTVTSNALIHGLCEAGSKE-----EAAKLL 465

Query: 186 MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            EM+ +G+  ++ +Y  +  A  +  KV+E   L ++M  +G  PD
Sbjct: 466 KEMLERGLVLDSISYNTLILACCKEGKVEEGFKLKEEMVRRGIQPD 511



 Score = 50.1 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/158 (24%), Positives = 66/158 (41%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           I  +M   G   N V    + D   + G    ALQ+   +   G  P+ V   ++I+ Y 
Sbjct: 289 ILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQIRDDMISNGISPNSVTCNSLIQGYC 348

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            + Q + A  +   ML  G   N  T+  +I  L      ++ +L     ++MEM+ +  
Sbjct: 349 KSNQMEHAEHLLEEMLTGGGVINQGTFTSVIHRLCLKCRFDSALL-----FIMEMLLRNF 403

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +PN G  T +     +  K  EA  L  ++  KGF  +
Sbjct: 404 KPNDGLLTLLVSGLCQNGKQSEAIELWYRLLEKGFAAN 441



 Score = 42.7 bits (99), Expect = 0.16,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 3/96 (3%)

Query: 74  LQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           +  I  +M    +  N +    M +   K G    A +L  ++  KG +PD V + A+  
Sbjct: 671 VDSILQEMSINNVHPNKITYTIMINGHCKLGNMKAAAKLLNEMAQKGIVPDAVTYNALTN 730

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKG 166
            +   G+ +EAL+V   M   G++ +  TY  LI G
Sbjct: 731 GFCKEGKMEEALKVCDLMSTGGISLDDITYTTLIDG 766


>gi|222636666|gb|EEE66798.1| hypothetical protein OsJ_23544 [Oryza sativa Japonica Group]
          Length = 665

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 90/184 (48%), Gaps = 10/184 (5%)

Query: 50  KSKLPPPYDPFKKVVDEEPT--DPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTH 104
           ++K PP    +  ++          N + IF  M  EG+  N V    +  A +  G+  
Sbjct: 181 RTKCPPDVVTYTSIMHSYCIYGQVENCKAIFDLMVAEGVKPNIVAYNSLLGAYASRGMHR 240

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EAL +F  IK  G  PD+V++T+++ AY  + Q ++A  VF +M  +   PN  +Y  LI
Sbjct: 241 EALAIFNLIKKNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNKMKKNSCKPNKVSYNALI 300

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
                 A G+A +L +A   L EM   G++P+  + + +  A  R +++     +L+  +
Sbjct: 301 D-----AYGSAGMLKEAVGLLHEMEKDGIQPDVVSISTLLAACGRCRQITRIETILEAAR 355

Query: 225 AKGF 228
           ++G 
Sbjct: 356 SRGI 359



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 93/192 (48%), Gaps = 26/192 (13%)

Query: 69  TDPRNLQEIFHKMRTEGLTNNAVKMFDALSK-------DGLTHEALQ----LFAQIKD-- 115
           +D   L  I H +   G    A+++F+++ +       D +T+ ++     ++ Q+++  
Sbjct: 149 SDTFTLNIIIHCLVKIGQCGEAIELFNSMRERRTKCPPDVVTYTSIMHSYCIYGQVENCK 208

Query: 116 --------KGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
                   +G  P++VA+ +++ AYAS G  +EAL +F  +  +G+ P+  +Y  L+   
Sbjct: 209 AIFDLMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDIVSYTSLLNAY 268

Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
             +A         A++   +M     +PN  +Y A+ +A+  A  + EA GLL +M+  G
Sbjct: 269 GRSAQPE-----KAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEMEKDG 323

Query: 228 FVPDEKAVKEAL 239
             PD  ++   L
Sbjct: 324 IQPDVVSISTLL 335



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 84/220 (38%), Gaps = 62/220 (28%)

Query: 71  PRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVV---- 123
           P   +E+F+KM+      N V    + DA    G+  EA+ L  +++  G  PDVV    
Sbjct: 274 PEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEMEKDGIQPDVVSIST 333

Query: 124 -------------------------------AHTAVIEAYASAGQGKEALRVFMRMLASG 152
                                          A+ + I++Y S G  ++AL ++  M  S 
Sbjct: 334 LLAACGRCRQITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDYEKALELYTSMRESN 393

Query: 153 VAPNAYTYAVLIKG---------------------LAAAADGNAKILGDAQKYLMEMVGK 191
           V P+A TY +LI G                     +++  +G    L +A+     M   
Sbjct: 394 VKPDAVTYNILISGSSKLGKYTESLRFFEDMVDSKVSSTKEGK---LSEAESTFSSMKKS 450

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G  P+  TYT + +A+        A  L ++M+  G  PD
Sbjct: 451 GCFPDVLTYTTLIQAYNAGGGWKRAWDLFKEMEVNGIPPD 490



 Score = 50.4 bits (119), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 66/146 (45%), Gaps = 10/146 (6%)

Query: 88  NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMR 147
           NN +   +A    G   +AL+L  ++ + G  PD+V H  V+ A  +  Q  +A+  F  
Sbjct: 85  NNVI---NACGAAGNWKKALELCKKMTENGVGPDLVTHNIVLSALKNGAQYSKAISYFEI 141

Query: 148 MLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR--PNAGTYTAVFE 205
           M  + V  + +T  ++I  L           G+A +    M  +  +  P+  TYT++  
Sbjct: 142 MKGANVTSDTFTLNIIIHCLVKIGQ-----CGEAIELFNSMRERRTKCPPDVVTYTSIMH 196

Query: 206 AFVRAQKVDEARGLLQQMKAKGFVPD 231
           ++    +V+  + +   M A+G  P+
Sbjct: 197 SYCIYGQVENCKAIFDLMVAEGVKPN 222



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 39/70 (55%)

Query: 98  SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA 157
           +K+G   EA   F+ +K  G  PDV+ +T +I+AY + G  K A  +F  M  +G+ P+A
Sbjct: 432 TKEGKLSEAESTFSSMKKSGCFPDVLTYTTLIQAYNAGGGWKRAWDLFKEMEVNGIPPDA 491

Query: 158 YTYAVLIKGL 167
              + L++  
Sbjct: 492 IICSSLMEAF 501



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 83/193 (43%), Gaps = 33/193 (17%)

Query: 74  LQEIFHKMRTEGLTNNAVKMFDALSKDGLT----HEALQLFAQIKDKGHMPDVVAHTAVI 129
           ++ I    R+ G+  N V  +++  K  L+     +AL+L+  +++    PD V +  +I
Sbjct: 347 IETILEAARSRGIDLNTVA-YNSGIKSYLSFGDYEKALELYTSMRESNVKPDAVTYNILI 405

Query: 130 EAYASAGQGKEALRVFMRML-----------------------ASGVAPNAYTYAVLIKG 166
              +  G+  E+LR F  M+                        SG  P+  TY  LI+ 
Sbjct: 406 SGSSKLGKYTESLRFFEDMVDSKVSSTKEGKLSEAESTFSSMKKSGCFPDVLTYTTLIQ- 464

Query: 167 LAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK 226
            A  A G  K   D  K   EM   G+ P+A   +++ EAF +  + +    L++ MK K
Sbjct: 465 -AYNAGGGWKRAWDLFK---EMEVNGIPPDAIICSSLMEAFNKGGEPERVLQLMEFMKKK 520

Query: 227 GFVPDEKAVKEAL 239
               ++K+  E +
Sbjct: 521 SIPLNQKSYFEII 533



 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 5/127 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +A  LF ++++    PD   + ++I A++ AGQ + A+ +   ML + + P   TY  +I
Sbjct: 29  QARGLFFEMQEWRCKPDADIYNSLIHAHSRAGQWRWAINIMEDMLRAAIPPTRTTYNNVI 88

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
               AA  GN K    A +   +M   G+ P+  T+  V  A     +  +A    + MK
Sbjct: 89  NACGAA--GNWK---KALELCKKMTENGVGPDLVTHNIVLSALKNGAQYSKAISYFEIMK 143

Query: 225 AKGFVPD 231
                 D
Sbjct: 144 GANVTSD 150



 Score = 40.4 bits (93), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 30/134 (22%), Positives = 54/134 (40%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +  A S+ G    A+ +   +      P    +  VI A  +AG  K+AL +  +M  +G
Sbjct: 52  LIHAHSRAGQWRWAINIMEDMLRAAIPPTRTTYNNVINACGAAGNWKKALELCKKMTENG 111

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V P+  T+ +++  L   A  +  I      Y   M G  +  +  T   +    V+  +
Sbjct: 112 VGPDLVTHNIVLSALKNGAQYSKAI-----SYFEIMKGANVTSDTFTLNIIIHCLVKIGQ 166

Query: 213 VDEARGLLQQMKAK 226
             EA  L   M+ +
Sbjct: 167 CGEAIELFNSMRER 180


>gi|12583808|gb|AAG59660.1|AC084319_18 putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
          Length = 772

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 70/139 (50%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   ++GL    ++L  Q+   G MPDV+ +T VI  +   G   EA+ +   M + G
Sbjct: 362 LVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCG 421

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN  +Y +++KGL +A         DA++ + +M+ +G  PN  T+  +     +   
Sbjct: 422 CKPNTVSYTIVLKGLCSAGR-----WVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGL 476

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V++A  LL+QM   G  PD
Sbjct: 477 VEQAIELLKQMLVNGCSPD 495



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 76/161 (47%), Gaps = 8/161 (4%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+  +M  +G   N V    + + L K GL  +A++L  Q+   G  PD+++++ VI+ 
Sbjct: 446 EELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDG 505

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              AG+ +EAL +   M+  G++PN   Y+ +   L+     N  I     +    +   
Sbjct: 506 LGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVI-----QMFDNIKDT 560

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
            +R +A  Y AV  +  +  + D A      M + G +P+E
Sbjct: 561 TIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNE 601



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 40/120 (33%), Positives = 67/120 (55%), Gaps = 8/120 (6%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+ + M  +G++ N +    +  ALS++G  ++ +Q+F  IKD     D V + AVI + 
Sbjct: 517 ELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSL 576

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               +   A+  F  M+++G  PN  TY +LIKGL  A++G AK   +AQ+ L E+  +G
Sbjct: 577 CKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGL--ASEGLAK---EAQELLSELCSRG 631



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 13/154 (8%)

Query: 97  LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
           L ++GL     ++ AQ+ + G  PD+  +  +I+     G  + A  +  RM + G+ PN
Sbjct: 261 LCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPN 320

Query: 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
              Y  ++KGL +A         +A++ L EM  K    +  T+  + + F +   VD  
Sbjct: 321 VVCYNTVLKGLCSAERWK-----EAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRV 375

Query: 217 RGLLQQMKAKGFVPD--------EKAVKEALIDK 242
             LL+QM + G +PD            KE LID+
Sbjct: 376 IELLEQMLSHGCMPDVITYTTVINGFCKEGLIDE 409



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 73/162 (45%), Gaps = 10/162 (6%)

Query: 74  LQEIFHKMRTEGLTNNAVKMF----DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           + E+  +M   G T + ++M+    D + K+G    A ++  ++   G  P+VV +  V+
Sbjct: 270 VHEVLAQMSEHGCTPD-IRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVL 328

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
           +   SA + KEA  +   M       +  T+ +L+            ++    + L +M+
Sbjct: 329 KGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNG-----LVDRVIELLEQML 383

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             G  P+  TYT V   F +   +DEA  LL+ M + G  P+
Sbjct: 384 SHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPN 425



 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 36/110 (32%), Positives = 52/110 (47%), Gaps = 8/110 (7%)

Query: 122 VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDA 181
           VVA+ A++  Y  AGQ   A R+   +    V PNAYT+  +++GL          + DA
Sbjct: 79  VVAYNAMVAGYCRAGQLAAARRLAAAV---PVPPNAYTFFPVVRGLCTRGR-----IADA 130

Query: 182 QKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            + L EM  KG  P    Y  + EA  R+     +  +L+ M AKG   D
Sbjct: 131 LEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLD 180



 Score = 45.4 bits (106), Expect = 0.022,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 67/163 (41%), Gaps = 8/163 (4%)

Query: 72  RNLQEIFHKMRTEGLT---NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           RN   +   M  +G T    N   + +A+ + G   EA+ L  ++   G   D+V++ AV
Sbjct: 163 RNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAV 222

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           ++    A +  +   +   M+    APN  T+  LI  L         +     + L +M
Sbjct: 223 LKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNG-----LFERVHEVLAQM 277

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              G  P+   Y  + +   +   ++ A  +L +M + G  P+
Sbjct: 278 SEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPN 320


>gi|115453829|ref|NP_001050515.1| Os03g0569800 [Oryza sativa Japonica Group]
 gi|113548986|dbj|BAF12429.1| Os03g0569800 [Oryza sativa Japonica Group]
          Length = 773

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 70/139 (50%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   ++GL    ++L  Q+   G MPDV+ +T VI  +   G   EA+ +   M + G
Sbjct: 362 LVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCG 421

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN  +Y +++KGL +A         DA++ + +M+ +G  PN  T+  +     +   
Sbjct: 422 CKPNTVSYTIVLKGLCSAGR-----WVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGL 476

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V++A  LL+QM   G  PD
Sbjct: 477 VEQAIELLKQMLVNGCSPD 495



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/161 (25%), Positives = 76/161 (47%), Gaps = 8/161 (4%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+  +M  +G   N V    + + L K GL  +A++L  Q+   G  PD+++++ VI+ 
Sbjct: 446 EELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDG 505

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              AG+ +EAL +   M+  G++PN   Y+ +   L+     N  I     +    +   
Sbjct: 506 LGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVI-----QMFDNIKDT 560

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
            +R +A  Y AV  +  +  + D A      M + G +P+E
Sbjct: 561 TIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNE 601



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 40/120 (33%), Positives = 67/120 (55%), Gaps = 8/120 (6%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+ + M  +G++ N +    +  ALS++G  ++ +Q+F  IKD     D V + AVI + 
Sbjct: 517 ELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSL 576

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               +   A+  F  M+++G  PN  TY +LIKGL  A++G AK   +AQ+ L E+  +G
Sbjct: 577 CKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGL--ASEGLAK---EAQELLSELCSRG 631



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 13/154 (8%)

Query: 97  LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
           L ++GL     ++ AQ+ + G  PD+  +  +I+     G  + A  +  RM + G+ PN
Sbjct: 261 LCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPN 320

Query: 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
              Y  ++KGL +A         +A++ L EM  K    +  T+  + + F +   VD  
Sbjct: 321 VVCYNTVLKGLCSAERWK-----EAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRV 375

Query: 217 RGLLQQMKAKGFVPD--------EKAVKEALIDK 242
             LL+QM + G +PD            KE LID+
Sbjct: 376 IELLEQMLSHGCMPDVITYTTVINGFCKEGLIDE 409



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 73/162 (45%), Gaps = 10/162 (6%)

Query: 74  LQEIFHKMRTEGLTNNAVKMF----DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           + E+  +M   G T + ++M+    D + K+G    A ++  ++   G  P+VV +  V+
Sbjct: 270 VHEVLAQMSEHGCTPD-IRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVL 328

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
           +   SA + KEA  +   M       +  T+ +L+            ++    + L +M+
Sbjct: 329 KGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNG-----LVDRVIELLEQML 383

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             G  P+  TYT V   F +   +DEA  LL+ M + G  P+
Sbjct: 384 SHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPN 425



 Score = 46.6 bits (109), Expect = 0.011,   Method: Composition-based stats.
 Identities = 36/110 (32%), Positives = 52/110 (47%), Gaps = 8/110 (7%)

Query: 122 VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDA 181
           VVA+ A++  Y  AGQ   A R+   +    V PNAYT+  +++GL          + DA
Sbjct: 79  VVAYNAMVAGYCRAGQLAAARRLAAAV---PVPPNAYTFFPVVRGLCTRGR-----IADA 130

Query: 182 QKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            + L EM  KG  P    Y  + EA  R+     +  +L+ M AKG   D
Sbjct: 131 LEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLD 180



 Score = 45.4 bits (106), Expect = 0.022,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 67/163 (41%), Gaps = 8/163 (4%)

Query: 72  RNLQEIFHKMRTEGLT---NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           RN   +   M  +G T    N   + +A+ + G   EA+ L  ++   G   D+V++ AV
Sbjct: 163 RNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAV 222

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           ++    A +  +   +   M+    APN  T+  LI  L         +     + L +M
Sbjct: 223 LKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNG-----LFERVHEVLAQM 277

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              G  P+   Y  + +   +   ++ A  +L +M + G  P+
Sbjct: 278 SEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPN 320


>gi|225454948|ref|XP_002277434.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial-like [Vitis vinifera]
          Length = 835

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 30/169 (17%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +     + G+   A  +F  +  KG + D++ + A+I  Y  +   K+A  V  +ML  G
Sbjct: 547 LISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISSHLKKAFAVHSQMLTEG 606

Query: 153 VAPNAYTYAVLIKGLAAA----------------------------ADGNAKI--LGDAQ 182
           V+PN  TY +L+ GL+AA                              G+ KI  + +  
Sbjct: 607 VSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGKIGNMKECV 666

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           K   EM+ KG  P   TY  +   F + +K+ +A+ L+Q+M+ +G  P+
Sbjct: 667 KLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPN 715



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 80/174 (45%), Gaps = 20/174 (11%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +M TEG++ N      +   LS   L  EA  L  Q+K++G +P+   +  ++  + 
Sbjct: 598 VHSQMLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHG 657

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G  KE ++++  M+  G  P   TY VLI   A       K +  A++ + EM  +G+
Sbjct: 658 KIGNMKECVKLYCEMITKGFVPKTRTYNVLISCFA-----KGKKMSQAKELMQEMQVRGI 712

Query: 194 RPNAGTYTAVFEAFVRAQKV------------DEARGLLQQMKAKGFVPDEKAV 235
            PN+ TY  +   + +  K              EA+ L ++M  KGF+P E  +
Sbjct: 713 PPNSSTYDILICGWYKLSKQPELNKSLKRSYQAEAKRLFEEMNEKGFIPCENTL 766



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 76/151 (50%), Gaps = 10/151 (6%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DA  K     +AL ++ ++  K  +PDVV +T ++     +G+ +EA  VF  M   G
Sbjct: 93  LIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKVEEAKSVFREMEEVG 152

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME--MVGKGMRPNAGTYTAVFEAFVRA 210
           V PN ++YA LI  L    +GN      A+ ++++  MV +G+  +   YTA+ +   +A
Sbjct: 153 VVPNRFSYATLIDSL--FKEGNV-----AEAFVLQGRMVVRGIGFDVVVYTALMDGLFKA 205

Query: 211 QKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
              + A  + Q +  +  VP+      ALID
Sbjct: 206 GMANNAEDMFQVLLEESLVPN-CVTYSALID 235



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 81/163 (49%), Gaps = 14/163 (8%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +F +M   G+  N      + D+L K+G   EA  L  ++  +G   DVV +TA+++ 
Sbjct: 142 KSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTALMDG 201

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQK---YLMEM 188
              AG    A  +F  +L   + PN  TY+ LI       DG+ K LGD  K    L EM
Sbjct: 202 LFKAGMANNAEDMFQVLLEESLVPNCVTYSALI-------DGHCK-LGDVNKGELLLQEM 253

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             K + PN   Y+++ + + +   ++EA  ++++M  +  +P+
Sbjct: 254 EEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPN 296



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 75/162 (46%), Gaps = 8/162 (4%)

Query: 73  NLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           N +++F  +  E L  N V    + D   K G  ++   L  ++++K   P+V+ +++++
Sbjct: 210 NAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIV 269

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
           + Y   G   EA+ V  +M+   + PN + Y  LI G   A        G A     EM 
Sbjct: 270 DGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQR-----GIALDLFKEMK 324

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +G+  N     +      R+ +++EA  L + M ++G +PD
Sbjct: 325 SRGLEENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPD 366



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 66/139 (47%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   ++G    A++L   +K +G  PD+V +  ++  +   G    A ++   +    
Sbjct: 23  LIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEISLVN 82

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN  TY  LI      A   ++ L DA     EM  K + P+  TYT +     ++ K
Sbjct: 83  LEPNVITYTTLID-----AYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGK 137

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V+EA+ + ++M+  G VP+
Sbjct: 138 VEEAKSVFREMEEVGVVPN 156



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 86/201 (42%), Gaps = 41/201 (20%)

Query: 76  EIFHKMRTEGLT-NNAV--KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F +M++ GL  NN V     + L + G   EA +LF  +  +G +PD V +T++++ +
Sbjct: 318 DLFKEMKSRGLEENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGF 377

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL------------------------- 167
             AG+  +A  +   M       +   Y VLI GL                         
Sbjct: 378 FKAGKESDAFNIAQEMTEKSSGFDVVAYNVLINGLFKLGKYESESFHTGMRQLGLAPDSA 437

Query: 168 -------AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
                  A   +GN   LG+A K L EM   G++PN+ T   + +    A ++++   LL
Sbjct: 438 TFNTMINAYCKEGN---LGNALKLLNEMKSYGLKPNSITCNILVQRLCAAGEIEKTMDLL 494

Query: 221 QQMKAKGFVP---DEKAVKEA 238
             M   GF P     KAV +A
Sbjct: 495 NDMLVMGFHPTPTTHKAVLDA 515



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 77/169 (45%), Gaps = 9/169 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+   M+TEG   + V    + +   K G    A +L  +I      P+V+ +T +I+AY
Sbjct: 38  ELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEISLVNLEPNVITYTTLIDAY 97

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             +   ++AL ++  M    + P+  TY  ++ GL  +       + +A+    EM   G
Sbjct: 98  CKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGK-----VEEAKSVFREMEEVG 152

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           + PN  +Y  + ++  +   V EA  L  +M  +G   D   V  AL+D
Sbjct: 153 VVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFD-VVVYTALMD 200



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 73/160 (45%), Gaps = 9/160 (5%)

Query: 76  EIFHK-MRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           E FH  MR  GL  ++     M +A  K+G    AL+L  ++K  G  P+ +    +++ 
Sbjct: 421 ESFHTGMRQLGLAPDSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQR 480

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
             +AG+ ++ + +   ML  G  P   T+  ++   A++    A ++        ++VG 
Sbjct: 481 LCAAGEIEKTMDLLNDMLVMGFHPTPTTHKAVLD--ASSKSRRADVILHMHD---QLVGM 535

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G++ +  TY  +   F R   +  A  + + M  KG + D
Sbjct: 536 GVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILAD 575



 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 77/174 (44%), Gaps = 18/174 (10%)

Query: 77  IFHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           + ++M+  GL  NA   +D L     K G   E ++L+ ++  KG +P    +  +I  +
Sbjct: 633 LVNQMKERGLVPNATT-YDILVSGHGKIGNMKECVKLYCEMITKGFVPKTRTYNVLISCF 691

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKG---LAAAADGNAKI----LGDAQKYL 185
           A   +  +A  +   M   G+ PN+ TY +LI G   L+   + N  +      +A++  
Sbjct: 692 AKGKKMSQAKELMQEMQVRGIPPNSSTYDILICGWYKLSKQPELNKSLKRSYQAEAKRLF 751

Query: 186 MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
            EM  KG  P   T   +     +  K  +A+ +L ++  K      K V+E L
Sbjct: 752 EEMNEKGFIPCENTLACISFTLAKPGKKADAQRILNKLYKK------KTVQELL 799



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 5/128 (3%)

Query: 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
           +E+      ++  G  PD      +I AY   G    AL++   M + G+ PN+ T  +L
Sbjct: 418 YESESFHTGMRQLGLAPDSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNIL 477

Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           ++ L AA +     +      L +M+  G  P   T+ AV +A  ++++ D    +  Q+
Sbjct: 478 VQRLCAAGE-----IEKTMDLLNDMLVMGFHPTPTTHKAVLDASSKSRRADVILHMHDQL 532

Query: 224 KAKGFVPD 231
              G   D
Sbjct: 533 VGMGVKLD 540


>gi|115469638|ref|NP_001058418.1| Os06g0690900 [Oryza sativa Japonica Group]
 gi|52076717|dbj|BAD45630.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|53793285|dbj|BAD54507.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113596458|dbj|BAF20332.1| Os06g0690900 [Oryza sativa Japonica Group]
          Length = 991

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 47/143 (32%), Positives = 69/143 (48%), Gaps = 5/143 (3%)

Query: 92  KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
           K+ ++L K     EA +L  +I   G +P+V+ +T++I+ Y  +G+   AL V   M   
Sbjct: 432 KLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERD 491

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           G  PNA+TY  L+ GL        K L  A   L +M   G+ PN  TYT + +      
Sbjct: 492 GCQPNAWTYNSLMYGLV-----KDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEH 546

Query: 212 KVDEARGLLQQMKAKGFVPDEKA 234
             D A  L + M+  G  PDE A
Sbjct: 547 DFDNAFRLFEMMEQNGLKPDEHA 569



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 11/159 (6%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+   M  +G   NA     +   L KD   H+A+ L  +++  G +P+V+ +T +++  
Sbjct: 483 EVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQ 542

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
                   A R+F  M  +G+ P+ + YAVL   L  A        G A++    +V KG
Sbjct: 543 CDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKA--------GRAEEAYSFIVRKG 594

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +      YT + + F +A   D A  L+++M  +G  PD
Sbjct: 595 VALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPD 633



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 14/172 (8%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + ++++M + G   +A       ++  K+G   +A  L  +++ +G  PDVV +  +I+ 
Sbjct: 689 KRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDG 748

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL---------AAAADG--NAKILGD 180
               G    A     RM+ +   PN +TY +L+K L         +    G  N   L  
Sbjct: 749 CGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDI 808

Query: 181 AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
             + L  MV  G+ P   TY+++   F +A +++EA  LL  M  KG  P+E
Sbjct: 809 TWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNE 860



 Score = 63.5 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 61/224 (27%), Positives = 93/224 (41%), Gaps = 41/224 (18%)

Query: 65  DEEPTDPRNLQEIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPD 121
           DE   D  N   +F  M   GL  +      + DAL K G   EA   ++ I  KG    
Sbjct: 544 DEHDFD--NAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEA---YSFIVRKGVALT 598

Query: 122 VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNA------ 175
            V +T +I+ ++ AG    A  +  RM+  G  P++YTY+VL+  L      N       
Sbjct: 599 KVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILD 658

Query: 176 --------------KILGD----------AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
                          IL D          A++   EM   G +P+A TYT    ++ +  
Sbjct: 659 QMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEG 718

Query: 212 KVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILF 255
           ++++A  L+ +M+ +G  PD       LID  G G  G I+  F
Sbjct: 719 RLEDAEDLILKMEREGVAPD-VVTYNILID--GCGHMGYIDRAF 759



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 11/151 (7%)

Query: 77  IFHKMRTEGLTNNAVKMF----DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +F  M+ +G + N V+ F      L K G   +A  LF  +   G +P V+ + A+I  Y
Sbjct: 275 LFLMMKRDGCSPN-VRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGY 333

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           +  G+  +AL++   M  +G  P+ +TY  LI GL    D   +   +A++ L   V +G
Sbjct: 334 SKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGL---CDQKTE---EAEELLNNAVKEG 387

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
             P   T+T +   +  A+K D+A  +  +M
Sbjct: 388 FTPTVVTFTNLINGYCMAEKFDDALRMKNKM 418



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/160 (25%), Positives = 72/160 (45%), Gaps = 8/160 (5%)

Query: 74  LQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           +  ++ ++  +GL  + V    M  +  K+G    A + F  + + G  P+     A++ 
Sbjct: 167 MGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVL 226

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
            Y   G+ ++A  +F+ M   G   N Y+Y +LI+GL      +AK +  A    + M  
Sbjct: 227 GYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLC-----DAKCVRKALVLFLMMKR 281

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
            G  PN   +T +     ++ +V +AR L   M   G VP
Sbjct: 282 DGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVP 321



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/158 (25%), Positives = 71/158 (44%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +M  EG T ++     +  AL K    +EAL +  Q+  +G    + A+T +I+   
Sbjct: 621 LIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEML 680

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G+   A R++  M +SG  P+A TY V I             L DA+  +++M  +G+
Sbjct: 681 REGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGR-----LEDAEDLILKMEREGV 735

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            P+  TY  + +       +D A   L++M      P+
Sbjct: 736 APDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPN 773



 Score = 53.5 bits (127), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 40/126 (31%), Positives = 56/126 (44%), Gaps = 6/126 (4%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +AL LF  +K  G  P+V A T +I     +G+  +A  +F  M  +GV P+  TY  +I
Sbjct: 271 KALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMI 330

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            G +     N     DA K    M   G  P+  TY  +       QK +EA  LL    
Sbjct: 331 VGYSKLGRMN-----DALKIKELMEKNGCHPDDWTYNTLIYGLCD-QKTEEAEELLNNAV 384

Query: 225 AKGFVP 230
            +GF P
Sbjct: 385 KEGFTP 390



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/153 (25%), Positives = 73/153 (47%), Gaps = 9/153 (5%)

Query: 81  MRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140
           +  E  T NA+ +     + G   +A  LF  +   G   +  ++T +I+    A   ++
Sbjct: 214 LEPETFTCNALVL--GYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCDAKCVRK 271

Query: 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD-GNAKILGDAQKYLMEMVGKGMRPNAGT 199
           AL +F+ M   G +PN   +  LI GL  +   G+A++L DA      M   G+ P+  T
Sbjct: 272 ALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDA------MPQNGVVPSVMT 325

Query: 200 YTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           Y A+   + +  ++++A  + + M+  G  PD+
Sbjct: 326 YNAMIVGYSKLGRMNDALKIKELMEKNGCHPDD 358



 Score = 42.0 bits (97), Expect = 0.22,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 5/129 (3%)

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
           QL  ++   G  P V  ++++I  +  AG+ +EA  +   M   G++PN   Y +LIK  
Sbjct: 811 QLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCC 870

Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
                 + K    A  ++  M   G +P   +Y  +          ++ + L   +   G
Sbjct: 871 C-----DTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELG 925

Query: 228 FVPDEKAVK 236
           +  DE A K
Sbjct: 926 YNHDEVAWK 934


>gi|222636130|gb|EEE66262.1| hypothetical protein OsJ_22447 [Oryza sativa Japonica Group]
          Length = 876

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 47/143 (32%), Positives = 69/143 (48%), Gaps = 5/143 (3%)

Query: 92  KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
           K+ ++L K     EA +L  +I   G +P+V+ +T++I+ Y  +G+   AL V   M   
Sbjct: 317 KLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERD 376

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           G  PNA+TY  L+ GL        K L  A   L +M   G+ PN  TYT + +      
Sbjct: 377 GCQPNAWTYNSLMYGLV-----KDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEH 431

Query: 212 KVDEARGLLQQMKAKGFVPDEKA 234
             D A  L + M+  G  PDE A
Sbjct: 432 DFDNAFRLFEMMEQNGLKPDEHA 454



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 11/159 (6%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+   M  +G   NA     +   L KD   H+A+ L  +++  G +P+V+ +T +++  
Sbjct: 368 EVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQ 427

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
                   A R+F  M  +G+ P+ + YAVL   L  A        G A++    +V KG
Sbjct: 428 CDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKA--------GRAEEAYSFIVRKG 479

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +      YT + + F +A   D A  L+++M  +G  PD
Sbjct: 480 VALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPD 518



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 14/172 (8%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + ++++M + G   +A       ++  K+G   +A  L  +++ +G  PDVV +  +I+ 
Sbjct: 574 KRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDG 633

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL---------AAAADG--NAKILGD 180
               G    A     RM+ +   PN +TY +L+K L         +    G  N   L  
Sbjct: 634 CGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDI 693

Query: 181 AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
             + L  MV  G+ P   TY+++   F +A +++EA  LL  M  KG  P+E
Sbjct: 694 TWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNE 745



 Score = 63.5 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 61/224 (27%), Positives = 93/224 (41%), Gaps = 41/224 (18%)

Query: 65  DEEPTDPRNLQEIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPD 121
           DE   D  N   +F  M   GL  +      + DAL K G   EA   ++ I  KG    
Sbjct: 429 DEHDFD--NAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEA---YSFIVRKGVALT 483

Query: 122 VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNA------ 175
            V +T +I+ ++ AG    A  +  RM+  G  P++YTY+VL+  L      N       
Sbjct: 484 KVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILD 543

Query: 176 --------------KILGD----------AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
                          IL D          A++   EM   G +P+A TYT    ++ +  
Sbjct: 544 QMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEG 603

Query: 212 KVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILF 255
           ++++A  L+ +M+ +G  PD       LID  G G  G I+  F
Sbjct: 604 RLEDAEDLILKMEREGVAPD-VVTYNILID--GCGHMGYIDRAF 644



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 11/151 (7%)

Query: 77  IFHKMRTEGLTNNAVKMF----DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +F  M+ +G + N V+ F      L K G   +A  LF  +   G +P V+ + A+I  Y
Sbjct: 160 LFLMMKRDGCSPN-VRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGY 218

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           +  G+  +AL++   M  +G  P+ +TY  LI GL    D   +   +A++ L   V +G
Sbjct: 219 SKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGL---CDQKTE---EAEELLNNAVKEG 272

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
             P   T+T +   +  A+K D+A  +  +M
Sbjct: 273 FTPTVVTFTNLINGYCMAEKFDDALRMKNKM 303



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/160 (25%), Positives = 72/160 (45%), Gaps = 8/160 (5%)

Query: 74  LQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           +  ++ ++  +GL  + V    M  +  K+G    A + F  + + G  P+     A++ 
Sbjct: 52  MGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVL 111

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
            Y   G+ ++A  +F+ M   G   N Y+Y +LI+GL      +AK +  A    + M  
Sbjct: 112 GYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLC-----DAKCVRKALVLFLMMKR 166

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
            G  PN   +T +     ++ +V +AR L   M   G VP
Sbjct: 167 DGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVP 206



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/158 (25%), Positives = 71/158 (44%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +M  EG T ++     +  AL K    +EAL +  Q+  +G    + A+T +I+   
Sbjct: 506 LIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEML 565

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G+   A R++  M +SG  P+A TY V I             L DA+  +++M  +G+
Sbjct: 566 REGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGR-----LEDAEDLILKMEREGV 620

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            P+  TY  + +       +D A   L++M      P+
Sbjct: 621 APDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPN 658



 Score = 53.5 bits (127), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 40/126 (31%), Positives = 56/126 (44%), Gaps = 6/126 (4%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +AL LF  +K  G  P+V A T +I     +G+  +A  +F  M  +GV P+  TY  +I
Sbjct: 156 KALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMI 215

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            G +     N     DA K    M   G  P+  TY  +       QK +EA  LL    
Sbjct: 216 VGYSKLGRMN-----DALKIKELMEKNGCHPDDWTYNTLIYGLCD-QKTEEAEELLNNAV 269

Query: 225 AKGFVP 230
            +GF P
Sbjct: 270 KEGFTP 275



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/153 (25%), Positives = 73/153 (47%), Gaps = 9/153 (5%)

Query: 81  MRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140
           +  E  T NA+ +     + G   +A  LF  +   G   +  ++T +I+    A   ++
Sbjct: 99  LEPETFTCNALVL--GYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCDAKCVRK 156

Query: 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD-GNAKILGDAQKYLMEMVGKGMRPNAGT 199
           AL +F+ M   G +PN   +  LI GL  +   G+A++L DA      M   G+ P+  T
Sbjct: 157 ALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDA------MPQNGVVPSVMT 210

Query: 200 YTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           Y A+   + +  ++++A  + + M+  G  PD+
Sbjct: 211 YNAMIVGYSKLGRMNDALKIKELMEKNGCHPDD 243



 Score = 42.0 bits (97), Expect = 0.22,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 5/129 (3%)

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
           QL  ++   G  P V  ++++I  +  AG+ +EA  +   M   G++PN   Y +LIK  
Sbjct: 696 QLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCC 755

Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
                 + K    A  ++  M   G +P   +Y  +          ++ + L   +   G
Sbjct: 756 C-----DTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELG 810

Query: 228 FVPDEKAVK 236
           +  DE A K
Sbjct: 811 YNHDEVAWK 819


>gi|125556563|gb|EAZ02169.1| hypothetical protein OsI_24261 [Oryza sativa Indica Group]
          Length = 991

 Score = 78.2 bits (191), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 47/143 (32%), Positives = 69/143 (48%), Gaps = 5/143 (3%)

Query: 92  KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
           K+ ++L K     EA +L  +I   G +P+V+ +T++I+ Y  +G+   AL V   M   
Sbjct: 432 KLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERD 491

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           G  PNA+TY  L+ GL        K L  A   L +M   G+ PN  TYT + +      
Sbjct: 492 GCQPNAWTYNSLMYGLV-----KDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEH 546

Query: 212 KVDEARGLLQQMKAKGFVPDEKA 234
             D A  L + M+  G  PDE A
Sbjct: 547 DFDNAFRLFEMMEQNGLKPDEHA 569



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/159 (27%), Positives = 74/159 (46%), Gaps = 11/159 (6%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+   M  +G   NA     +   L KD   H+A+ L  +++  G +P+V+ +T +++  
Sbjct: 483 EVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQ 542

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
                   A R+F  M  +G+ P+ + YAVL   L  A        G A++    +V KG
Sbjct: 543 CDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKA--------GRAEEAYSFIVRKG 594

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +      YT + + F +A   D A  L+++M  +G  PD
Sbjct: 595 VALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPD 633



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/172 (26%), Positives = 79/172 (45%), Gaps = 14/172 (8%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + ++++M + G   +A       ++  K+G   +A  L  +++ +G  PDVV +  +I+ 
Sbjct: 689 KRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDG 748

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL---------AAAADG--NAKILGD 180
               G    A     RM+ +   PN +TY +L+K L         +    G  N   L  
Sbjct: 749 CGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDI 808

Query: 181 AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
             + L  MV  G+ P   TY+++   F +A +++EA  LL  M  KG  P+E
Sbjct: 809 TWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNE 860



 Score = 63.5 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 61/224 (27%), Positives = 93/224 (41%), Gaps = 41/224 (18%)

Query: 65  DEEPTDPRNLQEIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPD 121
           DE   D  N   +F  M   GL  +      + DAL K G   EA   ++ I  KG    
Sbjct: 544 DEHDFD--NAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEA---YSFIVRKGVALT 598

Query: 122 VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNA------ 175
            V +T +I+ ++ AG    A  +  RM+  G  P++YTY+VL+  L      N       
Sbjct: 599 KVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILD 658

Query: 176 --------------KILGD----------AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
                          IL D          A++   EM   G +P+A TYT    ++ +  
Sbjct: 659 QMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEG 718

Query: 212 KVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILF 255
           ++++A  L+ +M+ +G  PD       LID  G G  G I+  F
Sbjct: 719 RLEDAEDLILKMEREGVAPD-VVTYNILID--GCGHMGYIDRAF 759



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 43/151 (28%), Positives = 74/151 (49%), Gaps = 11/151 (7%)

Query: 77  IFHKMRTEGLTNNAVKMF----DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +F  M+ +G + N V+ F      L K G   +A  LF  +   G +P V+ + A+I  Y
Sbjct: 275 LFLMMKRDGCSPN-VRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGY 333

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           +  G+  +AL++   M  +G  P+ +TY  LI GL    D   +   +A++ L   V +G
Sbjct: 334 SKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGL---CDQKTE---EAEELLNNAVKEG 387

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
             P   T+T +   +  A+K D+A  +  +M
Sbjct: 388 FTPTVVTFTNLINGYCMAEKFDDALRMKNKM 418



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/160 (25%), Positives = 72/160 (45%), Gaps = 8/160 (5%)

Query: 74  LQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           +  ++ ++  +GL  + V    M  +  K+G    A + F  + + G  P+     A++ 
Sbjct: 167 MGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRCFRLLLEGGLEPETFTCNALVL 226

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
            Y   G+ ++A  +F+ M   G   N Y+Y +LI+GL       AK + +A    + M  
Sbjct: 227 GYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLC-----EAKCVREALVLFLMMKR 281

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
            G  PN   +T +     ++ +V +AR L   M   G VP
Sbjct: 282 DGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVP 321



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/138 (30%), Positives = 59/138 (42%), Gaps = 6/138 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L +     EAL LF  +K  G  P+V A T +I     +G+  +A  +F  M  +G
Sbjct: 259 LIQGLCEAKCVREALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNG 318

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V P+  TY  +I G +     N     DA K    M   G  P+  TY  +       QK
Sbjct: 319 VVPSVMTYNAMIVGYSKLGRMN-----DALKIKELMEKNGCHPDDWTYNTLIYGLCD-QK 372

Query: 213 VDEARGLLQQMKAKGFVP 230
            +EA  LL     +GF P
Sbjct: 373 TEEAEELLNNAVKEGFTP 390



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/158 (25%), Positives = 71/158 (44%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +M  EG T ++     +  AL K    +EAL +  Q+  +G    + A+T +I+   
Sbjct: 621 LIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEML 680

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G+   A R++  M +SG  P+A TY V I             L DA+  +++M  +G+
Sbjct: 681 REGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGR-----LEDAEDLILKMEREGV 735

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            P+  TY  + +       +D A   L++M      P+
Sbjct: 736 APDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPN 773



 Score = 53.9 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 9/153 (5%)

Query: 81  MRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140
           +  E  T NA+ +     + G   +A  LF  +   G   +  ++T +I+    A   +E
Sbjct: 214 LEPETFTCNALVL--GYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCEAKCVRE 271

Query: 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD-GNAKILGDAQKYLMEMVGKGMRPNAGT 199
           AL +F+ M   G +PN   +  LI GL  +   G+A++L DA      M   G+ P+  T
Sbjct: 272 ALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDA------MPQNGVVPSVMT 325

Query: 200 YTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           Y A+   + +  ++++A  + + M+  G  PD+
Sbjct: 326 YNAMIVGYSKLGRMNDALKIKELMEKNGCHPDD 358



 Score = 42.0 bits (97), Expect = 0.22,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 5/129 (3%)

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
           QL  ++   G  P V  ++++I  +  AG+ +EA  +   M   G++PN   Y +LIK  
Sbjct: 811 QLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCC 870

Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
                 + K    A  ++  M   G +P   +Y  +          ++ + L   +   G
Sbjct: 871 C-----DTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELG 925

Query: 228 FVPDEKAVK 236
           +  DE A K
Sbjct: 926 YNHDEVAWK 934


>gi|341605763|gb|AEK82984.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 76/146 (52%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+G  +E   +F  +  KG  P+V  +T +I+ YA +G  ++A+R+  RM+  G  P
Sbjct: 26  GLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKP 85

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY+V++ GL      N ++  +A  Y       G+  N+  Y+++ +   +A ++DE
Sbjct: 86  DVVTYSVVVNGLCK----NGRV-EEALDYFQTCRFNGLAINSIFYSSLIDGLGKAGRIDE 140

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      ALID
Sbjct: 141 AERLFEEMSEKGCTRDSYCYN-ALID 165



 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 72/134 (53%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ D+G  PDVV ++ V+      G+ +EAL  F     +G
Sbjct: 58  LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNG 117

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +A N+  Y+ LI GL     G A  + +A++   EM  KG   ++  Y A+ +A  +  K
Sbjct: 118 LAINSIFYSSLIDGL-----GKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALXKHGK 172

Query: 213 VDEARGLLQQMKAK 226
           VDEA  L ++M+ +
Sbjct: 173 VDEAMTLFKRMEEE 186



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 6/143 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
            + L+ ++ +KG        + VI      G+  E   VF  M+  G  PN   Y VLI 
Sbjct: 1   CVALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLID 60

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G A +       + DA + L  M+ +G +P+  TY+ V     +  +V+EA    Q  + 
Sbjct: 61  GYAKSGS-----VEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRF 115

Query: 226 KGFVPDEKAVKEALIDKRGQGFR 248
            G   +      +LID  G+  R
Sbjct: 116 NGLAIN-SIFYSSLIDGLGKAGR 137


>gi|115447573|ref|NP_001047566.1| Os02g0644600 [Oryza sativa Japonica Group]
 gi|49387609|dbj|BAD25805.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|49388661|dbj|BAD25796.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113537097|dbj|BAF09480.1| Os02g0644600 [Oryza sativa Japonica Group]
          Length = 526

 Score = 78.2 bits (191), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 88/174 (50%), Gaps = 24/174 (13%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY-- 132
           FH M   GL+ + +    + +   K G   EA QLF Q+ + G  PDV+A+T +++ +  
Sbjct: 338 FHDMVQRGLSIDVIVYTILMNGYCKAGRLQEACQLFVQMTNLGIKPDVIAYTVLLDGHLK 397

Query: 133 ASAGQGKEAL----RVFM------RMLAS----GVAPNAYTYAVLIKGLAAAADGNAKIL 178
            +  QG E +    R F+      ++L+S     + P+   Y VLI G        A+ L
Sbjct: 398 ETLQQGWEGIAKERRSFLLRANHNKLLSSMKDMQIEPDVPCYTVLIDGKC-----KAEYL 452

Query: 179 GDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
            +A++   EM+ KG+ P+A  YTA+   +    ++ +A  LLQ+M  KG  PDE
Sbjct: 453 VEARELFDEMLQKGLTPDAYAYTALINGYCSQGEISKAEDLLQEMIDKGIEPDE 506



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 70/154 (45%), Gaps = 8/154 (5%)

Query: 78  FHKMRTEGLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F K +  GL  + V      D   K+G  +EA++L  ++K  G  PD + +T +I  Y  
Sbjct: 93  FLKFKDSGLHLDKVIYNIAMDTYCKNGNMNEAVKLLNEMKCGGLTPDKIHYTCLINGYCL 152

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            G+ + A +VF  ML + + P+  TY +L  G   +      ++ +    L  M   G+ 
Sbjct: 153 KGEMQNAQQVFEEMLKANIEPDIVTYNILASGFCKSG-----LVMEVFDLLDRMADHGLE 207

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
           PN+ TY      F R   + EA  L   ++ KG 
Sbjct: 208 PNSLTYGIAIVGFCRGGNLSEAEVLFNVVEEKGI 241



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 12/161 (7%)

Query: 92  KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
           K+     ++G   +A   F  +  +G   DV+ +T ++  Y  AG+ +EA ++F++M   
Sbjct: 320 KLISIYCQNGDMDKAHLWFHDMVQRGLSIDVIVYTILMNGYCKAGRLQEACQLFVQMTNL 379

Query: 152 GVAPNAYTYAVLIKG-----LAAAADGNAK------ILGDAQKYLMEMVGKGMRPNAGTY 200
           G+ P+   Y VL+ G     L    +G AK      +  +  K L  M    + P+   Y
Sbjct: 380 GIKPDVIAYTVLLDGHLKETLQQGWEGIAKERRSFLLRANHNKLLSSMKDMQIEPDVPCY 439

Query: 201 TAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           T + +   +A+ + EAR L  +M  KG  PD  A   ALI+
Sbjct: 440 TVLIDGKCKAEYLVEARELFDEMLQKGLTPDAYAYT-ALIN 479



 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 66/157 (42%), Gaps = 8/157 (5%)

Query: 78  FHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           +  M + G+  N      +     K G+T E +  F + KD G   D V +   ++ Y  
Sbjct: 58  YEAMVSHGIETNCHIVSYLLQCFRKLGMTSEVIAYFLKFKDSGLHLDKVIYNIAMDTYCK 117

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            G   EA+++   M   G+ P+   Y  LI G     +     + +AQ+   EM+   + 
Sbjct: 118 NGNMNEAVKLLNEMKCGGLTPDKIHYTCLINGYCLKGE-----MQNAQQVFEEMLKANIE 172

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           P+  TY  +   F ++  V E   LL +M   G  P+
Sbjct: 173 PDIVTYNILASGFCKSGLVMEVFDLLDRMADHGLEPN 209



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 57/106 (53%), Gaps = 5/106 (4%)

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
           +L + +KD    PDV  +T +I+    A    EA  +F  ML  G+ P+AY Y  LI G 
Sbjct: 422 KLLSSMKDMQIEPDVPCYTVLIDGKCKAEYLVEARELFDEMLQKGLTPDAYAYTALINGY 481

Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV 213
            +  +     +  A+  L EM+ KG+ P+  T++ + ++ +R++K+
Sbjct: 482 CSQGE-----ISKAEDLLQEMIDKGIEPDELTFSVLNQSSLRSRKI 522



 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
           EA +LF ++  KG  PD  A+TA+I  Y S G+  +A  +   M+  G+ P+  T++VL
Sbjct: 454 EARELFDEMLQKGLTPDAYAYTALINGYCSQGEISKAEDLLQEMIDKGIEPDELTFSVL 512


>gi|341606955|gb|AEK83580.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
          Length = 206

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 75/146 (51%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+G  +E   +F  +  KG  P+V  +T +I+ YA +G  ++A+R+  RM+  G  P
Sbjct: 23  GLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKP 82

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY+V++ GL      N ++  +A  Y       G   N+  Y+++ +   +A ++DE
Sbjct: 83  DVVTYSVVVNGLCK----NGRV-EEALDYFQTCRFNGFAINSMFYSSLIDGLGKAGRIDE 137

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      ALID
Sbjct: 138 AERLFEEMSEKGCTRDSYCYN-ALID 162



 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 71/134 (52%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ D+G  PDVV ++ V+      G+ +EAL  F     +G
Sbjct: 55  LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNG 114

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            A N+  Y+ LI GL     G A  + +A++   EM  KG   ++  Y A+ +A  +  K
Sbjct: 115 FAINSMFYSSLIDGL-----GKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGK 169

Query: 213 VDEARGLLQQMKAK 226
           VDEA  L ++M+ +
Sbjct: 170 VDEAMTLFKRMEEE 183



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 6/140 (4%)

Query: 109 LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
           L+ ++ +KG        + VI      G+  E   VF  M+  G  PN   Y VLI G A
Sbjct: 1   LYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYA 60

Query: 169 AAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
            +       + DA + L  M+ +G +P+  TY+ V     +  +V+EA    Q  +  GF
Sbjct: 61  KSGS-----VEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNGF 115

Query: 229 VPDEKAVKEALIDKRGQGFR 248
             +      +LID  G+  R
Sbjct: 116 AIN-SMFYSSLIDGLGKAGR 134


>gi|297733951|emb|CBI15198.3| unnamed protein product [Vitis vinifera]
          Length = 948

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 80/170 (47%), Gaps = 9/170 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +F  MR  G+  N      M D   K     +AL+L+ ++   G +P+VV    +I+ 
Sbjct: 248 ESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDG 307

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
                +   A +  + M + GV PN + Y  LI G   A  GN   L +A     E+   
Sbjct: 308 LCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKA--GN---LSEALSLHSEIEKH 362

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
            + P+  TY+ + +      +++EA GLLQ+MK KGF+P+       LID
Sbjct: 363 EILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPN-AVTYNTLID 411



 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 89/199 (44%), Gaps = 34/199 (17%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E++ +M  +GL  N V    + D L K      A +    +   G +P++  +  +I+ Y
Sbjct: 284 ELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGY 343

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAA-----ADG-------------- 173
             AG   EAL +   +    + P+ +TY++LIKGL        ADG              
Sbjct: 344 CKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNA 403

Query: 174 ---NAKILGDAQKYLME--------MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
              N  I G  ++  ME        M  KG+ PN  T++ + + + +A K++ A GL  +
Sbjct: 404 VTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTE 463

Query: 223 MKAKGFVPDEKAVKEALID 241
           M  KG +PD  A   ALID
Sbjct: 464 MVIKGLLPDVVAYT-ALID 481



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 78/171 (45%), Gaps = 9/171 (5%)

Query: 74  LQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           + +++  M   G + N V    + D   + G   +A +LF ++ +K   P VV +T +I 
Sbjct: 177 MWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIR 236

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
                 +  EA  +F  M  SG+ PN YTY  ++ G    A      +  A +   EM+G
Sbjct: 237 GLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAH-----VKKALELYQEMLG 291

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
            G+ PN  T+  + +   +  ++  AR  L  M + G VP+   V   LID
Sbjct: 292 DGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPN-IFVYNCLID 341



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 74/143 (51%), Gaps = 8/143 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +M+ +G   NAV    + D   K+G   +A+++ +Q+ +KG  P+++  + +I+ Y 
Sbjct: 390 LLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYC 449

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG+ + A+ ++  M+  G+ P+   Y  LI G     DGN K   +A +   EM   G+
Sbjct: 450 KAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDG--HFKDGNTK---EAFRLHKEMQEAGL 504

Query: 194 RPNAGTYTAVFEAFVRAQKVDEA 216
            PN  T + + +   +  ++ +A
Sbjct: 505 HPNVFTLSCLIDGLCKDGRISDA 527



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/137 (30%), Positives = 66/137 (48%), Gaps = 6/137 (4%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA  L  ++K KG +P+ V +  +I+ Y   G  ++A+ V  +M   G+ PN  T++ LI
Sbjct: 386 EADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLI 445

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            G   A    A     A     EMV KG+ P+   YTA+ +   +     EA  L ++M+
Sbjct: 446 DGYCKAGKMEA-----AMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQ 500

Query: 225 AKGFVPDEKAVKEALID 241
             G  P+   +   LID
Sbjct: 501 EAGLHPNVFTL-SCLID 516



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 70/155 (45%), Gaps = 5/155 (3%)

Query: 77  IFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           +++KM           + D L K G      +++  +  +G  P+VV +  +I+     G
Sbjct: 148 VYYKMDVLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQG 207

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196
              +A R+F  M+   + P    Y +LI+GL     G ++I  +A+     M   GM PN
Sbjct: 208 DFLKAFRLFDEMIEKKIFPTVVIYTILIRGLC----GESRI-SEAESMFRTMRNSGMLPN 262

Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             TY  + + + +   V +A  L Q+M   G +P+
Sbjct: 263 LYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPN 297



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 61/118 (51%), Gaps = 8/118 (6%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+  +M  +G+  N +    + D   K G    A+ L+ ++  KG +PDVVA+TA+I+ +
Sbjct: 424 EVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGH 483

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
              G  KEA R+   M  +G+ PN +T + LI GL    DG    + DA K  +   G
Sbjct: 484 FKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGL--CKDGR---ISDAIKLFLAKTG 536


>gi|242084770|ref|XP_002442810.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
 gi|241943503|gb|EES16648.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
          Length = 722

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 80/164 (48%), Gaps = 9/164 (5%)

Query: 81  MRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ 137
           M  EG++++ V    + D L K G  ++A  L  ++   G  PD + +T +I A+   G 
Sbjct: 509 MMLEGISSDTVTYNILIDGLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGL 568

Query: 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA 197
            +EA + F  M++ G+AP+A TY V I   A    GN   L  A  +  +M+ +G+ PN 
Sbjct: 569 LREARKFFKDMISDGLAPSAVTYTVFIH--AYCRRGN---LYSAYGWFRKMLEEGVEPNE 623

Query: 198 GTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
            TY  +  A  R  +   A     +M  +G VP+ K     LID
Sbjct: 624 ITYNVLIHALCRTGRTQLAYRHFHEMLERGLVPN-KYTYTLLID 666



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 74/155 (47%), Gaps = 8/155 (5%)

Query: 80  KMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           +M  EG+    V    M   L + G    A   F +++  G  PDV+ + +++  Y  AG
Sbjct: 333 EMENEGIMPTVVTYNAMIHGLLQSGQVEAAQVKFVEMRAMGLQPDVITYNSLLNGYCKAG 392

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196
             KEAL +F  +  +G+AP   TY +LI G     D     L +A++   EMV +G  P+
Sbjct: 393 SLKEALLLFGDLRHAGLAPTVLTYNILIDGYCRLGD-----LEEARRLKEEMVEQGCLPD 447

Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             TYT + +    A  +  AR    +M +KG  PD
Sbjct: 448 VCTYTILMKGSHNACSLAMAREFFDEMLSKGLQPD 482



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 73/165 (44%), Gaps = 11/165 (6%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D ++LQ    KM   GL  + +    +  A  + GL  EA + F  +   G  P  V +T
Sbjct: 536 DAKDLQ---MKMVHNGLQPDCITYTCLIHAHCERGLLREARKFFKDMISDGLAPSAVTYT 592

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
             I AY   G    A   F +ML  GV PN  TY VLI  L     G  ++   A ++  
Sbjct: 593 VFIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRT--GRTQL---AYRHFH 647

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           EM+ +G+ PN  TYT + +   +    ++A     +M   G  PD
Sbjct: 648 EMLERGLVPNKYTYTLLIDGNCKEGNWEDAMRFYFEMHQNGIHPD 692



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 74/157 (47%), Gaps = 8/157 (5%)

Query: 78  FHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F +MR  GL  + +    + +   K G   EAL LF  ++  G  P V+ +  +I+ Y  
Sbjct: 366 FVEMRAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILIDGYCR 425

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            G  +EA R+   M+  G  P+  TY +L+KG       NA  L  A+++  EM+ KG++
Sbjct: 426 LGDLEEARRLKEEMVEQGCLPDVCTYTILMKG-----SHNACSLAMAREFFDEMLSKGLQ 480

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           P+   Y     A +    + +A  L + M  +G   D
Sbjct: 481 PDCFAYNTRIRAELTLGAIAKAFRLREVMMLEGISSD 517



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 70/139 (50%), Gaps = 8/139 (5%)

Query: 72  RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R  ++ F  M ++GL  +AV       A  + G  + A   F ++ ++G  P+ + +  +
Sbjct: 570 REARKFFKDMISDGLAPSAVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVL 629

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I A    G+ + A R F  ML  G+ PN YTY +LI G     +GN +   DA ++  EM
Sbjct: 630 IHALCRTGRTQLAYRHFHEMLERGLVPNKYTYTLLIDG--NCKEGNWE---DAMRFYFEM 684

Query: 189 VGKGMRPNAGTYTAVFEAF 207
              G+ P+  T+ A+F+ F
Sbjct: 685 HQNGIHPDYLTHKALFKGF 703



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 5/125 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A + F ++  KG  PD  A+   I A  + G   +A R+   M+  G++ +  TY +LI 
Sbjct: 467 AREFFDEMLSKGLQPDCFAYNTRIRAELTLGAIAKAFRLREVMMLEGISSDTVTYNILID 526

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           GL    +     L DA+   M+MV  G++P+  TYT +  A      + EAR   + M +
Sbjct: 527 GLCKTGN-----LNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLLREARKFFKDMIS 581

Query: 226 KGFVP 230
            G  P
Sbjct: 582 DGLAP 586



 Score = 63.5 bits (153), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 76/161 (47%), Gaps = 8/161 (4%)

Query: 75  QEIFHKMRTEGLTNNAVKMFDALSKD---GLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E F +M ++GL  +       +  +   G   +A +L   +  +G   D V +  +I+ 
Sbjct: 468 REFFDEMLSKGLQPDCFAYNTRIRAELTLGAIAKAFRLREVMMLEGISSDTVTYNILIDG 527

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G   +A  + M+M+ +G+ P+  TY  LI      A     +L +A+K+  +M+  
Sbjct: 528 LCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIH-----AHCERGLLREARKFFKDMISD 582

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           G+ P+A TYT    A+ R   +  A G  ++M  +G  P+E
Sbjct: 583 GLAPSAVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGVEPNE 623



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 67/139 (48%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L   G   +A  L  +++++G MP VV + A+I     +GQ + A   F+ M A G
Sbjct: 314 LITGLLAKGFVKKADDLQLEMENEGIMPTVVTYNAMIHGLLQSGQVEAAQVKFVEMRAMG 373

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+  TY  L+ G   A       L +A     ++   G+ P   TY  + + + R   
Sbjct: 374 LQPDVITYNSLLNGYCKAGS-----LKEALLLFGDLRHAGLAPTVLTYNILIDGYCRLGD 428

Query: 213 VDEARGLLQQMKAKGFVPD 231
           ++EAR L ++M  +G +PD
Sbjct: 429 LEEARRLKEEMVEQGCLPD 447



 Score = 42.7 bits (99), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 32/129 (24%), Positives = 52/129 (40%), Gaps = 7/129 (5%)

Query: 98  SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA 157
           + D  +   L  F ++   G  PDV     V+   + A +  +   V   ML  G+ P+ 
Sbjct: 178 TPDTCSTLCLSAFHEMASHGVAPDVKDCNRVLRVLSDAARWDDICAVHAEMLQLGIEPSI 237

Query: 158 YTYAVLIKGLAAAA--DGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
            TY  L+         D  A +L +     ME  G G  PN  T+  V     R   ++E
Sbjct: 238 VTYNTLLDSFLKEGRNDKVAMLLKE-----METRGSGCLPNDVTHNVVITGLARKGDLEE 292

Query: 216 ARGLLQQMK 224
           A  +++ M+
Sbjct: 293 AAEMVEGMR 301


>gi|297744958|emb|CBI38550.3| unnamed protein product [Vitis vinifera]
          Length = 795

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 30/169 (17%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +     + G+   A  +F  +  KG + D++ + A+I  Y  +   K+A  V  +ML  G
Sbjct: 547 LISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISSHLKKAFAVHSQMLTEG 606

Query: 153 VAPNAYTYAVLIKGLAAA----------------------------ADGNAKI--LGDAQ 182
           V+PN  TY +L+ GL+AA                              G+ KI  + +  
Sbjct: 607 VSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGKIGNMKECV 666

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           K   EM+ KG  P   TY  +   F + +K+ +A+ L+Q+M+ +G  P+
Sbjct: 667 KLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPN 715



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 80/174 (45%), Gaps = 20/174 (11%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +M TEG++ N      +   LS   L  EA  L  Q+K++G +P+   +  ++  + 
Sbjct: 598 VHSQMLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHG 657

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G  KE ++++  M+  G  P   TY VLI   A       K +  A++ + EM  +G+
Sbjct: 658 KIGNMKECVKLYCEMITKGFVPKTRTYNVLISCFA-----KGKKMSQAKELMQEMQVRGI 712

Query: 194 RPNAGTYTAVFEAFVRAQKV------------DEARGLLQQMKAKGFVPDEKAV 235
            PN+ TY  +   + +  K              EA+ L ++M  KGF+P E  +
Sbjct: 713 PPNSSTYDILICGWYKLSKQPELNKSLKRSYQAEAKRLFEEMNEKGFIPCENTL 766



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 76/151 (50%), Gaps = 10/151 (6%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DA  K     +AL ++ ++  K  +PDVV +T ++     +G+ +EA  VF  M   G
Sbjct: 93  LIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKVEEAKSVFREMEEVG 152

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME--MVGKGMRPNAGTYTAVFEAFVRA 210
           V PN ++YA LI  L    +GN      A+ ++++  MV +G+  +   YTA+ +   +A
Sbjct: 153 VVPNRFSYATLIDSL--FKEGNV-----AEAFVLQGRMVVRGIGFDVVVYTALMDGLFKA 205

Query: 211 QKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
              + A  + Q +  +  VP+      ALID
Sbjct: 206 GMANNAEDMFQVLLEESLVPN-CVTYSALID 235



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 81/163 (49%), Gaps = 14/163 (8%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +F +M   G+  N      + D+L K+G   EA  L  ++  +G   DVV +TA+++ 
Sbjct: 142 KSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTALMDG 201

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQK---YLMEM 188
              AG    A  +F  +L   + PN  TY+ LI       DG+ K LGD  K    L EM
Sbjct: 202 LFKAGMANNAEDMFQVLLEESLVPNCVTYSALI-------DGHCK-LGDVNKGELLLQEM 253

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             K + PN   Y+++ + + +   ++EA  ++++M  +  +P+
Sbjct: 254 EEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPN 296



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 75/162 (46%), Gaps = 8/162 (4%)

Query: 73  NLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           N +++F  +  E L  N V    + D   K G  ++   L  ++++K   P+V+ +++++
Sbjct: 210 NAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIV 269

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
           + Y   G   EA+ V  +M+   + PN + Y  LI G   A        G A     EM 
Sbjct: 270 DGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQR-----GIALDLFKEMK 324

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +G+  N     +      R+ +++EA  L + M ++G +PD
Sbjct: 325 SRGLEENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPD 366



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 66/139 (47%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   ++G    A++L   +K +G  PD+V +  ++  +   G    A ++   +    
Sbjct: 23  LIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEISLVN 82

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN  TY  LI      A   ++ L DA     EM  K + P+  TYT +     ++ K
Sbjct: 83  LEPNVITYTTLID-----AYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGK 137

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V+EA+ + ++M+  G VP+
Sbjct: 138 VEEAKSVFREMEEVGVVPN 156



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 53/201 (26%), Positives = 86/201 (42%), Gaps = 41/201 (20%)

Query: 76  EIFHKMRTEGLT-NNAV--KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F +M++ GL  NN V     + L + G   EA +LF  +  +G +PD V +T++++ +
Sbjct: 318 DLFKEMKSRGLEENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPDRVNYTSMMDGF 377

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL------------------------- 167
             AG+  +A  +   M       +   Y VLI GL                         
Sbjct: 378 FKAGKESDAFNIAQEMTEKSSGFDVVAYNVLINGLFKLGKYESESFHTGMRQLGLAPDSA 437

Query: 168 -------AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
                  A   +GN   LG+A K L EM   G++PN+ T   + +    A ++++   LL
Sbjct: 438 TFNTMINAYCKEGN---LGNALKLLNEMKSYGLKPNSITCNILVQRLCAAGEIEKTMDLL 494

Query: 221 QQMKAKGFVP---DEKAVKEA 238
             M   GF P     KAV +A
Sbjct: 495 NDMLVMGFHPTPTTHKAVLDA 515



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 77/169 (45%), Gaps = 9/169 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+   M+TEG   + V    + +   K G    A +L  +I      P+V+ +T +I+AY
Sbjct: 38  ELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEISLVNLEPNVITYTTLIDAY 97

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             +   ++AL ++  M    + P+  TY  ++ GL  +       + +A+    EM   G
Sbjct: 98  CKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGK-----VEEAKSVFREMEEVG 152

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           + PN  +Y  + ++  +   V EA  L  +M  +G   D   V  AL+D
Sbjct: 153 VVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFD-VVVYTALMD 200



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 73/160 (45%), Gaps = 9/160 (5%)

Query: 76  EIFHK-MRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           E FH  MR  GL  ++     M +A  K+G    AL+L  ++K  G  P+ +    +++ 
Sbjct: 421 ESFHTGMRQLGLAPDSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQR 480

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
             +AG+ ++ + +   ML  G  P   T+  ++   A++    A ++        ++VG 
Sbjct: 481 LCAAGEIEKTMDLLNDMLVMGFHPTPTTHKAVLD--ASSKSRRADVILHMHD---QLVGM 535

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G++ +  TY  +   F R   +  A  + + M  KG + D
Sbjct: 536 GVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILAD 575



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 72/161 (44%), Gaps = 12/161 (7%)

Query: 77  IFHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           + ++M+  GL  NA   +D L     K G   E ++L+ ++  KG +P    +  +I  +
Sbjct: 633 LVNQMKERGLVPNATT-YDILVSGHGKIGNMKECVKLYCEMITKGFVPKTRTYNVLISCF 691

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKG---LAAAADGNAKI----LGDAQKYL 185
           A   +  +A  +   M   G+ PN+ TY +LI G   L+   + N  +      +A++  
Sbjct: 692 AKGKKMSQAKELMQEMQVRGIPPNSSTYDILICGWYKLSKQPELNKSLKRSYQAEAKRLF 751

Query: 186 MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK 226
            EM  KG  P   T   +     +  K  +A+ +L ++  K
Sbjct: 752 EEMNEKGFIPCENTLACISFTLAKPGKKADAQRILNKLYKK 792



 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 5/128 (3%)

Query: 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
           +E+      ++  G  PD      +I AY   G    AL++   M + G+ PN+ T  +L
Sbjct: 418 YESESFHTGMRQLGLAPDSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNIL 477

Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           ++ L AA +     +      L +M+  G  P   T+ AV +A  ++++ D    +  Q+
Sbjct: 478 VQRLCAAGE-----IEKTMDLLNDMLVMGFHPTPTTHKAVLDASSKSRRADVILHMHDQL 532

Query: 224 KAKGFVPD 231
              G   D
Sbjct: 533 VGMGVKLD 540


>gi|357466003|ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492334|gb|AES73537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1246

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 47/165 (28%), Positives = 81/165 (49%), Gaps = 8/165 (4%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D R +  +  +M++ GL  N         AL +     +A  +F ++ D+G  PDV+ +T
Sbjct: 250 DTRKIMNLLEEMKSIGLRPNIYTYTICIRALGRARRIDDAWGIFKEMDDEGCGPDVITYT 309

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
            +I+A  +AG+  +A  ++++M AS  +P+  TY  L+       D     L   +++  
Sbjct: 310 VLIDALCAAGKLDKAKELYVKMRASSHSPDRVTYITLMDKFGKVGD-----LETVKRFWN 364

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           EM   G  P+  TYT + EA  ++  VD A  +L  M  KG  P+
Sbjct: 365 EMEVDGYAPDVVTYTILIEALCKSGDVDRAFDMLDVMTTKGIFPN 409



 Score = 77.8 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 43/161 (26%), Positives = 81/161 (50%), Gaps = 8/161 (4%)

Query: 74   LQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
            L +++ +MR+ G   NA+    +  AL K    ++AL L+ ++      P    +  +I+
Sbjct: 850  LYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLID 909

Query: 131  AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
                AG+ ++A+++F  ML  G  PN+  Y +LI G   + +     +  A +   +MV 
Sbjct: 910  GLLKAGRSEQAMKIFEEMLDYGCGPNSVIYNILINGFGKSGE-----IDFACELFKKMVK 964

Query: 191  KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +G+RP+  +YT + E      ++DEA    +++K  G  PD
Sbjct: 965  EGIRPDLKSYTILVECLCITGRIDEAVQYFEELKLTGLDPD 1005



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 47/161 (29%), Positives = 83/161 (51%), Gaps = 14/161 (8%)

Query: 93  MFDALSKDGLTH--------EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRV 144
           + +A S +GL H        EAL+++ ++  +G  P +  ++A++ A    G  ++ + +
Sbjct: 198 ILNAYSYNGLIHLLLPGFCNEALKVYKRMISEGMKPSMKTYSALMVALGRRGDTRKIMNL 257

Query: 145 FMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVF 204
              M + G+ PN YTY + I+ L     G A+ + DA     EM  +G  P+  TYT + 
Sbjct: 258 LEEMKSIGLRPNIYTYTICIRAL-----GRARRIDDAWGIFKEMDDEGCGPDVITYTVLI 312

Query: 205 EAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
           +A   A K+D+A+ L  +M+A    PD +     L+DK G+
Sbjct: 313 DALCAAGKLDKAKELYVKMRASSHSPD-RVTYITLMDKFGK 352



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 8/157 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           IF +M  EG   + +    + DAL   G   +A +L+ +++   H PD V +  +++ + 
Sbjct: 292 IFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKELYVKMRASSHSPDRVTYITLMDKFG 351

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G  +   R +  M   G AP+  TY +LI+ L  + D     +  A   L  M  KG+
Sbjct: 352 KVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGD-----VDRAFDMLDVMTTKGI 406

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
            PN  TY  +    ++A+++DEA  LL+ M++ G  P
Sbjct: 407 FPNLHTYNTMICGLLKARRLDEALELLENMESLGVKP 443



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/162 (25%), Positives = 75/162 (46%), Gaps = 8/162 (4%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F  M++ G   N      + DA  K    ++   L+++++ +G  P+ + H  +I A 
Sbjct: 817 ELFEDMKSAGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISAL 876

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             +    +AL ++  +++   +P   TY  LI GL  A          A K   EM+  G
Sbjct: 877 VKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSE-----QAMKIFEEMLDYG 931

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
             PN+  Y  +   F ++ ++D A  L ++M  +G  PD K+
Sbjct: 932 CGPNSVIYNILINGFGKSGEIDFACELFKKMVKEGIRPDLKS 973



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/158 (27%), Positives = 78/158 (49%), Gaps = 8/158 (5%)

Query: 76   EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
            +IF +M   G   N+V    + +   K G    A +LF ++  +G  PD+ ++T ++E  
Sbjct: 922  KIFEEMLDYGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECL 981

Query: 133  ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               G+  EA++ F  +  +G+ P+  +Y  +I GL     G ++ L +A     EM  +G
Sbjct: 982  CITGRIDEAVQYFEELKLTGLDPDTVSYNFIINGL-----GKSRRLDEALSLFSEMKNRG 1036

Query: 193  MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
            + P+  TY A+      A KVD A  + ++++  G  P
Sbjct: 1037 ISPDLYTYNALILHLGIAGKVDVAVKMYEELQLVGLEP 1074



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 8/165 (4%)

Query: 76   EIFHKMRTEGLT---NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
            E+F KM  EG+     +   + + L   G   EA+Q F ++K  G  PD V++  +I   
Sbjct: 957  ELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFIINGL 1016

Query: 133  ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              + +  EAL +F  M   G++P+ YTY  LI  L  A   +  +     K   E+   G
Sbjct: 1017 GKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAGKVDVAV-----KMYEELQLVG 1071

Query: 193  MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKE 237
            + P+  TY A+      +   D+A  + ++M   G  P+ +   +
Sbjct: 1072 LEPSVFTYNALIRGHSLSGNKDQAFSVFKKMMVVGCSPNTETFAQ 1116



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 40/160 (25%), Positives = 75/160 (46%), Gaps = 10/160 (6%)

Query: 76  EIFHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +++ +M +EG+   ++K + AL     + G T + + L  ++K  G  P++  +T  I A
Sbjct: 221 KVYKRMISEGM-KPSMKTYSALMVALGRRGDTRKIMNLLEEMKSIGLRPNIYTYTICIRA 279

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              A +  +A  +F  M   G  P+  TY VLI  L AA       L  A++  ++M   
Sbjct: 280 LGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGK-----LDKAKELYVKMRAS 334

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              P+  TY  + + F +   ++  +    +M+  G+ PD
Sbjct: 335 SHSPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPD 374



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/158 (25%), Positives = 71/158 (44%), Gaps = 8/158 (5%)

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+   M + G+   A   V   D   K G   +A+  F  +K +G MP + A  A +   
Sbjct: 431 ELLENMESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMKKRGIMPSIAACNASLYTL 490

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           A  G+  EA  +F  +   G++P++ TY +L+K  + A       +  A + L EM+ KG
Sbjct: 491 AETGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQ-----IDKATQLLSEMISKG 545

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
             P+     ++     +A +VD A  +  ++K     P
Sbjct: 546 CEPDVMIINSLINTLYKAGRVDAAWKMFGRLKNLKLAP 583



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 44/160 (27%), Positives = 74/160 (46%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           ++IF+ +   GL+ ++V    +    SK G   +A QL +++  KG  PDV+   ++I  
Sbjct: 500 EDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMIINSLINT 559

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              AG+   A ++F R+    +AP   TY +L+ GL        KIL  A +    M   
Sbjct: 560 LYKAGRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGK----EGKIL-KALELFGSMTES 614

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G  PN  T+ ++ +   +   VD A  +  +M      PD
Sbjct: 615 GCPPNTITFNSLLDCLSKNDAVDLALKMFCRMTMMNCNPD 654



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 52/233 (22%), Positives = 93/233 (39%), Gaps = 46/233 (19%)

Query: 40  DQPTKKYVNTKSKLPPP--------YDPFKKVVDEEPTDPRNLQEIFHKMRTEGLTNNAV 91
           D+  + YV  ++    P         D F KV D E      ++  +++M  +G   + V
Sbjct: 322 DKAKELYVKMRASSHSPDRVTYITLMDKFGKVGDLE-----TVKRFWNEMEVDGYAPDVV 376

Query: 92  K---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRM 148
               + +AL K G    A  +   +  KG  P++  +  +I     A +  EAL +   M
Sbjct: 377 TYTILIEALCKSGDVDRAFDMLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENM 436

Query: 149 LASGVAPNAYTYAVLIKGLAAAADGNAKI----------------LGDAQKYLMEMVGK- 191
            + GV P A++Y + I     + D    I                  +A  Y +   G+ 
Sbjct: 437 ESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMKKRGIMPSIAACNASLYTLAETGRI 496

Query: 192 -------------GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
                        G+ P++ TY  + + + +A ++D+A  LL +M +KG  PD
Sbjct: 497 SEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPD 549



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 71/146 (48%), Gaps = 8/146 (5%)

Query: 76   EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
            + F +++  GL  + V    + + L K     EAL LF+++K++G  PD+  + A+I   
Sbjct: 992  QYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHL 1051

Query: 133  ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              AG+   A++++  +   G+ P+ +TY  LI+G + + + +      A     +M+  G
Sbjct: 1052 GIAGKVDVAVKMYEELQLVGLEPSVFTYNALIRGHSLSGNKD-----QAFSVFKKMMVVG 1106

Query: 193  MRPNAGTYTAVFEAFVRAQKVDEARG 218
              PN  T+  +   + RA  V    G
Sbjct: 1107 CSPNTETFAQLPNKYPRAGLVHNPFG 1132



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 6/139 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K G    A ++F ++K+    P VV +  ++      G+  +AL +F  M  SG
Sbjct: 556 LINTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGKEGKILKALELFGSMTESG 615

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN  T+  L+  L+     +A  L  A K    M      P+  TY  +    +R  +
Sbjct: 616 CPPNTITFNSLLDCLS---KNDAVDL--ALKMFCRMTMMNCNPDVLTYNTIIYGLIREGR 670

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +D A     QMK K   PD
Sbjct: 671 IDYAFWFFHQMK-KFLSPD 688



 Score = 51.2 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 58/117 (49%), Gaps = 5/117 (4%)

Query: 114 KDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADG 173
           K+ G  P + ++  +++    +   ++AL +F  M ++G  PN +TY +L+      A G
Sbjct: 788 KNLGIHPTLESYNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLLLD-----AHG 842

Query: 174 NAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
            +K +        EM  +G  PNA T+  +  A V++  +++A  L  ++ +  F P
Sbjct: 843 KSKRINKLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYELMSGDFSP 899



 Score = 43.1 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 55/124 (44%), Gaps = 6/124 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L K+G   +AL+LF  + + G  P+ +   ++++  +       AL++F RM    
Sbjct: 591 LLTGLGKEGKILKALELFGSMTESGCPPNTITFNSLLDCLSKNDAVDLALKMFCRMTMMN 650

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  TY  +I GL        +I  D   +    + K + P+  T   +    VR  +
Sbjct: 651 CNPDVLTYNTIIYGLIR----EGRI--DYAFWFFHQMKKFLSPDYVTLCTLIPGVVRHGR 704

Query: 213 VDEA 216
           V++A
Sbjct: 705 VEDA 708


>gi|124360736|gb|ABN08713.1| Pentatricopeptide repeat [Medicago truncatula]
          Length = 479

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 83/165 (50%), Gaps = 9/165 (5%)

Query: 71  PRNLQEIFHKM---RTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P +   +FHKM   + +    + + +FD L ++     A+  + ++++KG  P VV+   
Sbjct: 101 PLDAIRVFHKMEDFQVKPTQKSYLTVFDILVEENHVKRAIGFYKEMREKGIPPTVVSLNI 160

Query: 128 VIEAYASAGQGKE-ALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
           +I+A     +  E A R+F  M   G  P++YTY  LI GL          +  A++ L 
Sbjct: 161 LIKALCKNEETVESAFRLFREMPNRGCQPDSYTYGTLINGLCKLGK-----ISQAKELLD 215

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           EM  KG+ P+  +YT++     ++  +DEA  LL++M   G  P+
Sbjct: 216 EMEEKGLSPSVVSYTSLIHGLCQSNNLDEAIELLEEMIINGIEPN 260



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 72/139 (51%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K G   +A +L  ++++KG  P VV++T++I     +    EA+ +   M+ +G
Sbjct: 197 LINGLCKLGKISQAKELLDEMEEKGLSPSVVSYTSLIHGLCQSNNLDEAIELLEEMIING 256

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN +TY+ L+ GL  +   +      A + L  MV + + PN  TY+ +     +  K
Sbjct: 257 IEPNVFTYSSLMDGLCKSGHSS-----QAMELLEVMVRRRLLPNMVTYSTLINGLCKEGK 311

Query: 213 VDEARGLLQQMKAKGFVPD 231
             EA  +L +M+ +G  PD
Sbjct: 312 HREAVEILDRMRLQGLKPD 330



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 78/158 (49%), Gaps = 9/158 (5%)

Query: 78  FHKMRTEGLTNNAVKM---FDALSKDGLTHE-ALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           + +MR +G+    V +     AL K+  T E A +LF ++ ++G  PD   +  +I    
Sbjct: 143 YKEMREKGIPPTVVSLNILIKALCKNEETVESAFRLFREMPNRGCQPDSYTYGTLINGLC 202

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G+  +A  +   M   G++P+  +Y  LI GL  + +     L +A + L EM+  G+
Sbjct: 203 KLGKISQAKELLDEMEEKGLSPSVVSYTSLIHGLCQSNN-----LDEAIELLEEMIINGI 257

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            PN  TY+++ +   ++    +A  LL+ M  +  +P+
Sbjct: 258 EPNVFTYSSLMDGLCKSGHSSQAMELLEVMVRRRLLPN 295



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/202 (21%), Positives = 82/202 (40%), Gaps = 50/202 (24%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+  +M   G+  N      + D L K G + +A++L   +  +  +P++V ++ +I   
Sbjct: 247 ELLEEMIINGIEPNVFTYSSLMDGLCKSGHSSQAMELLEVMVRRRLLPNMVTYSTLINGL 306

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+ +EA+ +  RM   G+ P+A  Y  +I GL AA +       +A  ++ EM   G
Sbjct: 307 CKEGKHREAVEILDRMRLQGLKPDAGMYGRIISGLCAACN-----YQEAANFIDEMALGG 361

Query: 193 MRPN------------------------------------------AGTYTAVFEAFVRA 210
           + PN                                           GT+  + + F + 
Sbjct: 362 ISPNRASWTFHVKMHNMVVQGLCNNVDPTRAFQLYLSMRTRGISVEIGTFDCLVKCFCKR 421

Query: 211 QKVDEARGLLQQMKAKGFVPDE 232
             +++A  +L++M   G +PDE
Sbjct: 422 GDLNKAARILEEMILDGCIPDE 443


>gi|449440401|ref|XP_004137973.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Cucumis sativus]
          Length = 606

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 73/155 (47%), Gaps = 8/155 (5%)

Query: 81  MRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ 137
           M   G+  N V    + D   K+    EA +LF  ++ KG  P VV + A IE Y   G+
Sbjct: 428 MEERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGK 487

Query: 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA 197
            +EA ++   M   G+ P+ YTY  LI G    A GN   +  A +   EM   G+  N 
Sbjct: 488 MEEAYKLINEMQERGLMPDTYTYTSLIDG--ERASGN---VDRALELFNEMPQLGLNRNV 542

Query: 198 GTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
            TYT +     +  + DEA  L  +M  +G VPD+
Sbjct: 543 VTYTVIISGLSKDGRADEAFKLYDEMNKEGIVPDD 577



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 81/171 (47%), Gaps = 8/171 (4%)

Query: 79  HKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASA 135
           + M+++G+  N V    + D   K G+  EAL+L   ++ KG   D      +   +  +
Sbjct: 356 NDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRS 415

Query: 136 GQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP 195
            + +EA R+ + M   GVAPN  ++++LI       +       +A++    M  KG  P
Sbjct: 416 NRREEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQN-----FAEARRLFKVMEKKGKAP 470

Query: 196 NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
           +  TY A  E + +  K++EA  L+ +M+ +G +PD       +  +R  G
Sbjct: 471 SVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLIDGERASG 521



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 73/168 (43%), Gaps = 8/168 (4%)

Query: 67  EPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVV 123
           E  D   + EI   M    +  N      + +  S+     EA +LF ++  KG  PDV 
Sbjct: 239 EIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVY 298

Query: 124 AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQK 183
            +T++I      G  K A  +F  M    + PNAYTY  LI G   A +  A     A+ 
Sbjct: 299 IYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKA-----AEM 353

Query: 184 YLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            + +M  KG+  N   +  + + + +   +DEA  L   M+ KGF  D
Sbjct: 354 MVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEID 401



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 68/159 (42%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVKMFD---ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F   R +G   +    F+   AL + G     ++   Q+ D G    V + TAV++  
Sbjct: 143 EVFDYARKKGFEIDERSCFEFLLALKRSGNMELCVEFLRQMVDSGIEIRVCSWTAVVDGL 202

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+   A  +   ++  G  P+  TY  L+ G     D     +G   + L  M    
Sbjct: 203 CKKGEVVRAKALMDELVCKGFKPSVITYNTLLNGYIEIKD-----VGGVNEILSLMEKNV 257

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +  N  TYT + E + R+ K++EA  L  +M  KG  PD
Sbjct: 258 VDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPD 296



 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 71/157 (45%), Gaps = 8/157 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M    L  NA     + +   K G    A  +   ++ KG   + V    +++ Y 
Sbjct: 319 LFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMDGYC 378

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G   EALR+   M   G   +A+T  ++  G   +   N +   +A++ L+ M  +G+
Sbjct: 379 KKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRS---NRR--EEAKRLLLTMEERGV 433

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
            PN  +++ + + + + Q   EAR L + M+ KG  P
Sbjct: 434 APNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAP 470


>gi|341606837|gb|AEK83521.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606869|gb|AEK83537.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606977|gb|AEK83591.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606979|gb|AEK83592.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606981|gb|AEK83593.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606983|gb|AEK83594.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606985|gb|AEK83595.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606987|gb|AEK83596.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606989|gb|AEK83597.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606991|gb|AEK83598.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606993|gb|AEK83599.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606995|gb|AEK83600.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606997|gb|AEK83601.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606999|gb|AEK83602.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341607001|gb|AEK83603.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341607003|gb|AEK83604.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341607005|gb|AEK83605.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341607007|gb|AEK83606.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341607009|gb|AEK83607.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341607011|gb|AEK83608.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341607013|gb|AEK83609.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341607015|gb|AEK83610.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
          Length = 207

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 75/146 (51%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+G  +E   +F  +  KG  P+V  +T +I+ YA +G  ++A+R+  RM+  G  P
Sbjct: 23  GLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKP 82

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY+V++ GL      N ++  +A  Y       G   N+  Y+++ +   +A ++DE
Sbjct: 83  DVVTYSVVVNGLCK----NGRV-EEALDYFQTCRFNGFAINSMFYSSLIDGLGKAGRIDE 137

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      ALID
Sbjct: 138 AERLFEEMSEKGCTRDSYCYN-ALID 162



 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 71/134 (52%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ D+G  PDVV ++ V+      G+ +EAL  F     +G
Sbjct: 55  LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNG 114

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            A N+  Y+ LI GL     G A  + +A++   EM  KG   ++  Y A+ +A  +  K
Sbjct: 115 FAINSMFYSSLIDGL-----GKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGK 169

Query: 213 VDEARGLLQQMKAK 226
           VDEA  L ++M+ +
Sbjct: 170 VDEAMTLFKRMEEE 183



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 6/140 (4%)

Query: 109 LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
           L+ ++ +KG        + VI      G+  E   VF  M+  G  PN   Y VLI G A
Sbjct: 1   LYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYA 60

Query: 169 AAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
            +       + DA + L  M+ +G +P+  TY+ V     +  +V+EA    Q  +  GF
Sbjct: 61  KSGS-----VEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNGF 115

Query: 229 VPDEKAVKEALIDKRGQGFR 248
             +      +LID  G+  R
Sbjct: 116 AIN-SMFYSSLIDGLGKAGR 134


>gi|255660842|gb|ACU25590.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
          Length = 418

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 82/189 (43%), Gaps = 33/189 (17%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            E+F +M  +GL  N V    + D   K+G    A++++ QI  +G  PD++ +  +I  
Sbjct: 226 HELFDEMLEKGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQILSQGLSPDLITYNTLIYG 285

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD------------------- 172
           +   G  K+   +   M   G+ P+  TY  LI G     D                   
Sbjct: 286 FCKKGDLKQTRDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKKMIEENIRLD 345

Query: 173 ---GNAKILG--------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221
                A I G        DA+K L EM+  G++P++GTYT V   F +   V+    LL+
Sbjct: 346 DVVYTALISGLCKEGRSVDAEKMLREMLSVGLKPDSGTYTIVMNEFCKNGDVNTGSKLLK 405

Query: 222 QMKAKGFVP 230
           +M+  G VP
Sbjct: 406 EMQRDGHVP 414



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 109/236 (46%), Gaps = 13/236 (5%)

Query: 2   AATAILRWLLHSPSPKRS-LRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPF 60
           +A+A+   +L +   +RS + + +  + A L+      + +  +  ++ + K   P+D  
Sbjct: 47  SASAVFAAILETKGTQRSDIYVFSGLITAYLESGFLRDALECFR--LSREHKFWVPFDTC 104

Query: 61  KKVVDE-EPTDPRNLQEIFHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIKD 115
           +KV+D         L   F+K   E     ++  F+ L     K+G    A  +F  I  
Sbjct: 105 RKVLDHLMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEIRLAQLVFDAITK 164

Query: 116 KGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNA 175
            G  P VV+   ++  Y   G   E  R+   M ASG  P+ YTY+VLI GL   +    
Sbjct: 165 WGLKPSVVSFNTLMNGYIKMGILDEGFRLKNAMHASGAQPDVYTYSVLINGLCKESK--- 221

Query: 176 KILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             + +A +   EM+ KG+ PN  T+T + +   +  K+D A  + +Q+ ++G  PD
Sbjct: 222 --MDEAHELFDEMLEKGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQILSQGLSPD 275



 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 75/148 (50%), Gaps = 6/148 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K+    EA +LF ++ +KG +P+ V  T +I+ +   G+   A+ ++ ++L+ G
Sbjct: 212 LINGLCKESKMDEAHELFDEMLEKGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQILSQG 271

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           ++P+  TY  LI G     D     L   +  + EM  KG++P+  TYT + +   +   
Sbjct: 272 LSPDLITYNTLIYGFCKKGD-----LKQTRDLIDEMSMKGLKPDKITYTTLIDGSCKEGD 326

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALI 240
           ++ A    ++M  +    D+  V  ALI
Sbjct: 327 LETAFEYRKKMIEENIRLDD-VVYTALI 353


>gi|413916119|gb|AFW56051.1| hypothetical protein ZEAMMB73_517553 [Zea mays]
          Length = 663

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 80/163 (49%), Gaps = 9/163 (5%)

Query: 84  EGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140
           EG++++ V    + D L K G   +A +L  Q+   G  PD + +T +I A+   G  +E
Sbjct: 506 EGISSDTVTYNILIDGLCKTGNLKDAEELMMQMISNGLQPDCITYTCLIHAHCERGFLRE 565

Query: 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTY 200
           A + F  M++ G+ P+A TY V+I   A    GN   L  A  +  +M+ +G+ PN  TY
Sbjct: 566 ARKFFNDMISDGLPPSAVTYTVIIH--AYCRRGN---LYSAYGWFRKMLEEGVEPNEITY 620

Query: 201 TAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKR 243
             +  A  R  +   A     +M  +G VP+ K     LID +
Sbjct: 621 NVLIHALCRMGRTQLAYRHFYEMLERGLVPN-KYTYTLLIDGK 662



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 73/155 (47%), Gaps = 8/155 (5%)

Query: 80  KMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           +M  EG+    V    M   L + G    A   F +++  G +PDV+ + +++  Y  AG
Sbjct: 327 EMENEGIMPTVVTYNAMIHGLLQSGQIEAAQAKFVEMRAMGLLPDVITYNSLLNGYCKAG 386

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196
             KEAL +F  +  +G+AP   TY +LI G     D     L +A++   EMV +G  P+
Sbjct: 387 NQKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGD-----LEEARRLKEEMVEQGCLPD 441

Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             TYT + +       +   R    +M +KG  PD
Sbjct: 442 VYTYTILMKGSHNVCSLAMTREFFDEMLSKGLRPD 476



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 78/161 (48%), Gaps = 8/161 (4%)

Query: 75  QEIFHKMRTEGLTNNAVKMFDALSKD---GLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E F +M ++GL  +       +  +   G   ++ QL   I  +G   D V +  +I+ 
Sbjct: 462 REFFDEMLSKGLRPDCFAYNTRICAEITLGDISKSFQLREVIMLEGISSDTVTYNILIDG 521

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G  K+A  + M+M+++G+ P+  TY  LI      A      L +A+K+  +M+  
Sbjct: 522 LCKTGNLKDAEELMMQMISNGLQPDCITYTCLIH-----AHCERGFLREARKFFNDMISD 576

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           G+ P+A TYT +  A+ R   +  A G  ++M  +G  P+E
Sbjct: 577 GLPPSAVTYTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNE 617



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 74/160 (46%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           Q  F +MR  GL  + +    + +   K G   EAL LF  ++  G  P V+ +  +I+ 
Sbjct: 357 QAKFVEMRAMGLLPDVITYNSLLNGYCKAGNQKEALLLFGDLRRAGLAPTVLTYNILIDG 416

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y   G  +EA R+   M+  G  P+ YTY +L+KG       N   L   +++  EM+ K
Sbjct: 417 YCRLGDLEEARRLKEEMVEQGCLPDVYTYTILMKG-----SHNVCSLAMTREFFDEMLSK 471

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G+RP+   Y     A +    + ++  L + +  +G   D
Sbjct: 472 GLRPDCFAYNTRICAEITLGDISKSFQLREVIMLEGISSD 511



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 65/137 (47%), Gaps = 8/137 (5%)

Query: 72  RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           ++ +E+  +M + GL  + +    +  A  + G   EA + F  +   G  P  V +T +
Sbjct: 529 KDAEELMMQMISNGLQPDCITYTCLIHAHCERGFLREARKFFNDMISDGLPPSAVTYTVI 588

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I AY   G    A   F +ML  GV PN  TY VLI  L     G  ++   A ++  EM
Sbjct: 589 IHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRM--GRTQL---AYRHFYEM 643

Query: 189 VGKGMRPNAGTYTAVFE 205
           + +G+ PN  TYT + +
Sbjct: 644 LERGLVPNKYTYTLLID 660



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 67/129 (51%), Gaps = 15/129 (11%)

Query: 107 LQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKG 166
           LQL  +++++G MP VV + A+I     +GQ + A   F+ M A G+ P+  TY  L+ G
Sbjct: 324 LQL--EMENEGIMPTVVTYNAMIHGLLQSGQIEAAQAKFVEMRAMGLLPDVITYNSLLNG 381

Query: 167 LAAAADGNAK----ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
              A  GN K    + GD ++        G+ P   TY  + + + R   ++EAR L ++
Sbjct: 382 YCKA--GNQKEALLLFGDLRR-------AGLAPTVLTYNILIDGYCRLGDLEEARRLKEE 432

Query: 223 MKAKGFVPD 231
           M  +G +PD
Sbjct: 433 MVEQGCLPD 441



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 3/98 (3%)

Query: 72  RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R  ++ F+ M ++GL  +AV    +  A  + G  + A   F ++ ++G  P+ + +  +
Sbjct: 564 REARKFFNDMISDGLPPSAVTYTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVL 623

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKG 166
           I A    G+ + A R F  ML  G+ PN YTY +LI G
Sbjct: 624 IHALCRMGRTQLAYRHFYEMLERGLVPNKYTYTLLIDG 661


>gi|147833070|emb|CAN77584.1| hypothetical protein VITISV_034996 [Vitis vinifera]
          Length = 913

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 68/141 (48%), Gaps = 5/141 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M + L ++G   E   +  Q+   G  P+     AVI  +  A + ++ALR F  M++ G
Sbjct: 410 MINGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFVRASKLEDALRFFGNMVSKG 469

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P   TY  LI GL+      A+   +A   + EM+ KG +PN  TY+ +     + +K
Sbjct: 470 CFPTVVTYNTLINGLS-----KAERFSEAYALVKEMLQKGWKPNMITYSLLMNGLCQGKK 524

Query: 213 VDEARGLLQQMKAKGFVPDEK 233
           +D A  L  Q   KGF PD K
Sbjct: 525 LDMALNLWCQALEKGFKPDVK 545



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 57/125 (45%), Gaps = 5/125 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           AL L+ Q  +KG  PDV  H  +I    S+G+ ++AL+++  M      PN  T+  L++
Sbjct: 528 ALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRNCVPNLVTHNTLME 587

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G     D        A K    ++  G++P+  +Y    +      ++ +A G L     
Sbjct: 588 GFYKVRD-----FERASKIWDHILQYGLQPDIISYNITLKGLCSCHRISDAVGFLNDAVD 642

Query: 226 KGFVP 230
           +G +P
Sbjct: 643 RGVLP 647



 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/192 (20%), Positives = 81/192 (42%), Gaps = 44/192 (22%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+ + M  +G + +      + ++L+K+G   +AL+LF ++ ++G  PDV  +  +I+ 
Sbjct: 144 KELLNWMWGQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDG 203

Query: 132 Y------------------------------------ASAGQGKEALRVFMRMLASGVAP 155
           +                                       G+  E+  ++ RM  +    
Sbjct: 204 FFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQ 263

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           + YTY+ LI GL  + +     L  A +   EM   G+ P+   Y  +   ++RA +++E
Sbjct: 264 DLYTYSTLIHGLCGSGN-----LDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEE 318

Query: 216 ARGLLQQMKAKG 227
              L + M+ +G
Sbjct: 319 CLELWKVMEKEG 330



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 72/148 (48%), Gaps = 13/148 (8%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L   G   +ALQL++++K +  +P++V H  ++E +      + A +++  +L  G
Sbjct: 550 IIHGLCSSGKVEDALQLYSEMKQRNCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYG 609

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+  +Y + +KGL +        + DA  +L + V +G+ P A T+  + + ++  + 
Sbjct: 610 LQPDIISYNITLKGLCSCHR-----ISDAVGFLNDAVDRGVLPTAITWNILVQGYLALKG 664

Query: 213 VDEARGLL--------QQMKAKGFVPDE 232
             E   +          QM+  GFV D+
Sbjct: 665 YMEPVFVPASMKGNPGMQMRYFGFVCDK 692



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 80/165 (48%), Gaps = 15/165 (9%)

Query: 71  PRNL--QEIFHKMRTEGLTNNAVKMFDALSK-DGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P++L  + +   +++E   ++A+ +FD++++  G +H    +F  I  +   P +VAH  
Sbjct: 5   PKSLSPKRVIKLLKSEKNPHSALSIFDSVTRFPGYSHTP-YVFHHILKRLFDPKLVAH-- 61

Query: 128 VIEAYASAGQGKEALRVFMRML-ASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
              AYA      +AL +F RM    G  P   +Y  L+  L  +   +     +A+ + +
Sbjct: 62  ---AYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWD-----EAESFFL 113

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
                G+ PN  TY  + +   R ++ D+A+ LL  M  +GF PD
Sbjct: 114 YFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWGQGFSPD 158



 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 73/157 (46%), Gaps = 13/157 (8%)

Query: 92  KMFD------ALSKDGLTHEALQLFAQIKDK-GHMPDVVAHTAVIEAYASAGQGKEALRV 144
           ++FD      A +K+ +  +AL +F ++ +  G  P + ++ +++ A   + +  EA   
Sbjct: 52  RLFDPKLVAHAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESF 111

Query: 145 FMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVF 204
           F+     G++PN  TY +LIK          K    A++ L  M G+G  P+  +Y  + 
Sbjct: 112 FLYFETMGLSPNLQTYNILIK-----ISCRKKQFDKAKELLNWMWGQGFSPDVFSYGTLI 166

Query: 205 EAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
            +  +   + +A  L  +M  +G  PD  A    LID
Sbjct: 167 NSLAKNGYMSDALKLFDEMPERGVTPD-VACYNILID 202



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 69/154 (44%), Gaps = 9/154 (5%)

Query: 75  QEIFHKMRTEGLTNNAVKMFDALSKDGLT----HEALQLFAQIKDKGHMPDVVAHTAVIE 130
           +  F    T GL+ N ++ ++ L K         +A +L   +  +G  PDV ++  +I 
Sbjct: 109 ESFFLYFETMGLSPN-LQTYNILIKISCRKKQFDKAKELLNWMWGQGFSPDVFSYGTLIN 167

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
           + A  G   +AL++F  M   GV P+   Y +LI G     D    IL  ++ +   + G
Sbjct: 168 SLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGD----ILNASEIWERLLKG 223

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
             + PN  +Y  +     +  K DE+  +  +MK
Sbjct: 224 PSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMK 257



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/158 (21%), Positives = 67/158 (42%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
            F  M ++G     V    + + LSK     EA  L  ++  KG  P+++ ++ ++    
Sbjct: 461 FFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGWKPNMITYSLLMNGLC 520

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
              +   AL ++ + L  G  P+   + ++I GL ++       + DA +   EM  +  
Sbjct: 521 QGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGK-----VEDALQLYSEMKQRNC 575

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            PN  T+  + E F + +  + A  +   +   G  PD
Sbjct: 576 VPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGLQPD 613



 Score = 45.8 bits (107), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 71/160 (44%), Gaps = 13/160 (8%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           ++ +M   G++ + V    M +   + G   E L+L+  ++ +G    VV++  +I    
Sbjct: 287 VYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEG-CRTVVSYNILIRGLF 345

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN--AKILGDAQKYLMEMVGK 191
              +  EA+ ++  +       ++ TY VL+ GL      N    IL +A+       G+
Sbjct: 346 ENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAEN------GR 399

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G   +   Y+++     R  ++DE  G+L QM   G  P+
Sbjct: 400 G-DLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPN 438



 Score = 44.3 bits (103), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 30/139 (21%), Positives = 57/139 (41%), Gaps = 6/139 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M + L K G   E+ +++ ++K      D+  ++ +I     +G    A RV+  M  +G
Sbjct: 236 MINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENG 295

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V+P+   Y  ++ G   A       + +  +    M  +G R    +Y  +        K
Sbjct: 296 VSPDVVVYNTMLNGYLRAGR-----IEECLELWKVMEKEGCR-TVVSYNILIRGLFENAK 349

Query: 213 VDEARGLLQQMKAKGFVPD 231
           VDEA  + + +  K    D
Sbjct: 350 VDEAISIWELLPEKDCCAD 368


>gi|357140125|ref|XP_003571621.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Brachypodium distachyon]
          Length = 814

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 8/167 (4%)

Query: 67  EPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVV 123
           E  + +   E+   M  +G+  + +    M     KD    EAL+L   +  KG  PD  
Sbjct: 489 EGKNMKGATEVLRTMVNKGMELDNITYNIMIQGCCKDSKIEEALKLRDDMIRKGFKPDAY 548

Query: 124 AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQK 183
              ++I AY   G+ +EAL +  +M   GV P+  +Y  +I G   A D     +  A +
Sbjct: 549 MFNSIIHAYCDLGKMEEALHLLGQMKIEGVQPDVVSYGTIIDGYCKAKD-----IQKANE 603

Query: 184 YLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           YL E++  G++PNA  Y A+   + R   +  A G+L  M++ G  P
Sbjct: 604 YLNELMACGLKPNAVIYNALIGGYGRNGNISGAIGVLDTMESIGIQP 650



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/166 (24%), Positives = 76/166 (45%), Gaps = 10/166 (6%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIKDKGHMPDVVAH 125
           D +   E  +++   GL  NAV +++AL     ++G    A+ +   ++  G  P  V +
Sbjct: 597 DIQKANEYLNELMACGLKPNAV-IYNALIGGYGRNGNISGAIGVLDTMESIGIQPTNVTY 655

Query: 126 TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185
            +++     AG   EA  +F +   + +      Y ++I+GL          + +A  Y 
Sbjct: 656 CSLMHWMCHAGLVDEAKTMFEQSRKNSIEVGVVGYTIMIQGLCKIGK-----MDEAMNYF 710

Query: 186 MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            EM  + + PN  TYT +  A+ ++   +EA  L  +M + G VPD
Sbjct: 711 EEMRSRSIPPNKITYTTLMYAYCKSGNNEEASKLFDEMVSSGIVPD 756



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 5/128 (3%)

Query: 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
            EA+ ++ ++ +KG   ++    A+I         K A  V   M+  G+  +  TY ++
Sbjct: 459 QEAVGIWLKMLEKGLCINIATSNALIHGLCEGKNMKGATEVLRTMVNKGMELDNITYNIM 518

Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           I+G       ++KI  +A K   +M+ KG +P+A  + ++  A+    K++EA  LL QM
Sbjct: 519 IQGCCK----DSKI-EEALKLRDDMIRKGFKPDAYMFNSIIHAYCDLGKMEEALHLLGQM 573

Query: 224 KAKGFVPD 231
           K +G  PD
Sbjct: 574 KIEGVQPD 581



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 45/183 (24%), Positives = 82/183 (44%), Gaps = 10/183 (5%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +M   G+T N V   ++ D   + G   EA++LF ++  K      V +  +  A  
Sbjct: 323 LLREMEGLGITPNEVICNELIDWHCRKGHFTEAIRLFDEMVSKEMKSTAVTYNLIARALC 382

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G+ + A R+   ML++G+  ++  +  ++ GL          L    + + EMV +GM
Sbjct: 383 KEGEMERAERILEEMLSTGMTIHSGLFNSVVAGLLQ----RTGRLESVVRLISEMVKRGM 438

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDK--RGQGFRGVI 251
           +PN    TA  +   + ++  EA G+  +M  KG   +  A   ALI     G+  +G  
Sbjct: 439 KPNDALMTACTKQLCQGRRHQEAVGIWLKMLEKGLCIN-IATSNALIHGLCEGKNMKGAT 497

Query: 252 NIL 254
            +L
Sbjct: 498 EVL 500



 Score = 53.5 bits (127), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 5/116 (4%)

Query: 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
           GL  EA  +F Q +       VV +T +I+     G+  EA+  F  M +  + PN  TY
Sbjct: 666 GLVDEAKTMFEQSRKNSIEVGVVGYTIMIQGLCKIGKMDEAMNYFEEMRSRSIPPNKITY 725

Query: 161 AVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
             L+   A    GN +   +A K   EMV  G+ P+  +Y  +   F +   +D+A
Sbjct: 726 TTLM--YAYCKSGNNE---EASKLFDEMVSSGIVPDNVSYNTLVTGFSQVDSLDKA 776



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/162 (24%), Positives = 65/162 (40%), Gaps = 30/162 (18%)

Query: 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
           G   EAL L  Q+K +G  PDVV++  +I+ Y  A   ++A      ++A G+ PNA  Y
Sbjct: 561 GKMEEALHLLGQMKIEGVQPDVVSYGTIIDGYCKAKDIQKANEYLNELMACGLKPNAVIY 620

Query: 161 AVLIKGLAAAADGNAKI-----------------------------LGDAQKYLMEMVGK 191
             LI G     + +  I                             L D  K + E   K
Sbjct: 621 NALIGGYGRNGNISGAIGVLDTMESIGIQPTNVTYCSLMHWMCHAGLVDEAKTMFEQSRK 680

Query: 192 -GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
             +      YT + +   +  K+DEA    ++M+++   P++
Sbjct: 681 NSIEVGVVGYTIMIQGLCKIGKMDEAMNYFEEMRSRSIPPNK 722



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 43/76 (56%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M   L K G   EA+  F +++ +   P+ + +T ++ AY  +G  +EA ++F  M++SG
Sbjct: 693 MIQGLCKIGKMDEAMNYFEEMRSRSIPPNKITYTTLMYAYCKSGNNEEASKLFDEMVSSG 752

Query: 153 VAPNAYTYAVLIKGLA 168
           + P+  +Y  L+ G +
Sbjct: 753 IVPDNVSYNTLVTGFS 768



 Score = 50.1 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 11/157 (7%)

Query: 76  EIFHKMR-TEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKG--HMPDVVAHTAVI 129
           ++F +MR  + +T N      M  AL K G   +  ++ + +   G       V +  ++
Sbjct: 214 KVFDEMRDCKTVTPNGYSYTSMIKALCKVGKVDDGFKILSDLIHAGLQQSAGAVPYNLLM 273

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
           +A   +G+  EA+R+  RM  S VAP+  T+ +LI GL       +   G+    L EM 
Sbjct: 274 DALCKSGRVDEAIRLKGRMEESRVAPSMVTFGILINGLK-----RSDRFGEVGALLREME 328

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK 226
           G G+ PN      + +   R     EA  L  +M +K
Sbjct: 329 GLGITPNEVICNELIDWHCRKGHFTEAIRLFDEMVSK 365



 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/169 (23%), Positives = 78/169 (46%), Gaps = 13/169 (7%)

Query: 81  MRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140
           M T G+  N +K  D   + G       L  +++  G  P+ V    +I+ +   G   E
Sbjct: 301 MVTFGILINGLKRSDRFGEVG------ALLREMEGLGITPNEVICNELIDWHCRKGHFTE 354

Query: 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTY 200
           A+R+F  M++  +   A TY ++ + L    +     +  A++ L EM+  GM  ++G +
Sbjct: 355 AIRLFDEMVSKEMKSTAVTYNLIARALCKEGE-----MERAERILEEMLSTGMTIHSGLF 409

Query: 201 TAVFEAFV-RAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFR 248
            +V    + R  +++    L+ +M  +G  P++ A+  A   +  QG R
Sbjct: 410 NSVVAGLLQRTGRLESVVRLISEMVKRGMKPND-ALMTACTKQLCQGRR 457



 Score = 47.8 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 8/136 (5%)

Query: 98  SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRML-ASGVAPN 156
           S  G    A+  F  +  +   P V    A++EA A  G      +VF  M     V PN
Sbjct: 169 SARGSLRLAVDAFHVLSSRRASPSVKTCNALLEALARTGNLGATCKVFDEMRDCKTVTPN 228

Query: 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGT--YTAVFEAFVRAQKVD 214
            Y+Y  +IK L          + D  K L +++  G++ +AG   Y  + +A  ++ +VD
Sbjct: 229 GYSYTSMIKALCKVGK-----VDDGFKILSDLIHAGLQQSAGAVPYNLLMDALCKSGRVD 283

Query: 215 EARGLLQQMKAKGFVP 230
           EA  L  +M+     P
Sbjct: 284 EAIRLKGRMEESRVAP 299


>gi|242092708|ref|XP_002436844.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
 gi|241915067|gb|EER88211.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
          Length = 755

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 65/123 (52%), Gaps = 5/123 (4%)

Query: 109 LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
           L  ++ + G  PDVVA+  VI  +   GQ ++A  +F+ M+  G+ PN  TY  +I GL 
Sbjct: 148 LLLRMSEFGCPPDVVAYNTVINGFFREGQVEKAYNLFLEMMDQGIPPNVVTYTTVIDGLC 207

Query: 169 AAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
                 A+++  A+    +M+ +G++P+ GTY  +   ++   K  E   +L++M   G 
Sbjct: 208 -----KAQVVDRAKGVFQQMIDRGVKPDNGTYNCLIHGYLSTGKWKEVVQMLEEMSTHGL 262

Query: 229 VPD 231
            PD
Sbjct: 263 EPD 265



 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 99/223 (44%), Gaps = 18/223 (8%)

Query: 15  SPKRSLRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKKVVDEEP----TD 70
           SP R  RI N    A  ++++   +     K    +  L P    F  ++D        D
Sbjct: 333 SPNR--RIFNIMFCAYAKKAMIEEAMHIFNKM--RQQGLSPDVVSFGALIDALCKLGRVD 388

Query: 71  PRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
              LQ  F++M  EG+T N      +   L   G   +A +LF ++ D+G   D V    
Sbjct: 389 DAVLQ--FNQMINEGVTPNIFVFSSLVYGLCTVGKWEKAEELFFEVLDQGICVDAVFFNT 446

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           ++    + G+  EA R+   M+  GV PN  +Y  L+ G           + +A K L  
Sbjct: 447 LMCNLCNEGRVMEAQRLIDLMIRVGVRPNVISYNTLVAGHCLTGR-----IDEAAKLLDV 501

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           MV  G++PN  TYT +   + +A++VD+A  L ++M  KG  P
Sbjct: 502 MVSNGLKPNEFTYTILLRGYCKARRVDDAYSLFREMLMKGVTP 544



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 82/160 (51%), Gaps = 8/160 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
            IF+KMR +GL+ + V    + DAL K G   +A+  F Q+ ++G  P++   ++++   
Sbjct: 357 HIFNKMRQQGLSPDVVSFGALIDALCKLGRVDDAVLQFNQMINEGVTPNIFVFSSLVYGL 416

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
            + G+ ++A  +F  +L  G+  +A  +  L+  L      N   + +AQ+ +  M+  G
Sbjct: 417 CTVGKWEKAEELFFEVLDQGICVDAVFFNTLMCNLC-----NEGRVMEAQRLIDLMIRVG 471

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           +RPN  +Y  +        ++DEA  LL  M + G  P+E
Sbjct: 472 VRPNVISYNTLVAGHCLTGRIDEAAKLLDVMVSNGLKPNE 511



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 87/198 (43%), Gaps = 34/198 (17%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M  +G+  N V    + D L K  +   A  +F Q+ D+G  PD   +  +I  Y 
Sbjct: 183 LFLEMMDQGIPPNVVTYTTVIDGLCKAQVVDRAKGVFQQMIDRGVKPDNGTYNCLIHGYL 242

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLI---------------------KGL----- 167
           S G+ KE +++   M   G+ P+  TYA+L+                     KG+     
Sbjct: 243 STGKWKEVVQMLEEMSTHGLEPDCITYALLLDYLCKNGRCREARLFFDSMFRKGIKPDVA 302

Query: 168 --AAAADGNAK--ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
             A    G A    L +   +L  MVG G+ PN   +  +F A+ +   ++EA  +  +M
Sbjct: 303 IYAILLHGYATKGALSEMHSFLDLMVGNGVSPNRRIFNIMFCAYAKKAMIEEAMHIFNKM 362

Query: 224 KAKGFVPDEKAVKEALID 241
           + +G  PD  +   ALID
Sbjct: 363 RQQGLSPDVVSFG-ALID 379



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 65/139 (46%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +   ++G   +A  LF ++ D+G  P+VV +T VI+    A     A  VF +M+  G
Sbjct: 167 VINGFFREGQVEKAYNLFLEMMDQGIPPNVVTYTTVIDGLCKAQVVDRAKGVFQQMIDRG 226

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V P+  TY  LI G  +   G  K   +  + L EM   G+ P+  TY  + +   +  +
Sbjct: 227 VKPDNGTYNCLIHGYLST--GKWK---EVVQMLEEMSTHGLEPDCITYALLLDYLCKNGR 281

Query: 213 VDEARGLLQQMKAKGFVPD 231
             EAR     M  KG  PD
Sbjct: 282 CREARLFFDSMFRKGIKPD 300



 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 74/152 (48%), Gaps = 8/152 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+F ++  +G+  +AV    +   L  +G   EA +L   +   G  P+V+++  ++  
Sbjct: 426 EELFFEVLDQGICVDAVFFNTLMCNLCNEGRVMEAQRLIDLMIRVGVRPNVISYNTLVAG 485

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +   G+  EA ++   M+++G+ PN +TY +L++G        A+ + DA     EM+ K
Sbjct: 486 HCLTGRIDEAAKLLDVMVSNGLKPNEFTYTILLRGYC-----KARRVDDAYSLFREMLMK 540

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           G+ P   TY  +     +  +  EA  L   M
Sbjct: 541 GVTPVVATYNTILHGLFQTGRFSEANELYLNM 572



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 74/159 (46%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++  +M T GL  + +    + D L K+G   EA   F  +  KG  PDV  +  ++  Y
Sbjct: 252 QMLEEMSTHGLEPDCITYALLLDYLCKNGRCREARLFFDSMFRKGIKPDVAIYAILLHGY 311

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           A+ G   E       M+ +GV+PN   + ++    A  A     ++ +A     +M  +G
Sbjct: 312 ATKGALSEMHSFLDLMVGNGVSPNRRIFNIMFCAYAKKA-----MIEEAMHIFNKMRQQG 366

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + P+  ++ A+ +A  +  +VD+A     QM  +G  P+
Sbjct: 367 LSPDVVSFGALIDALCKLGRVDDAVLQFNQMINEGVTPN 405



 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 5/127 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M  AL K G   +A+ LFA I   G +PDVV +  + E     G   E   +F  M  SG
Sbjct: 622 MIGALLKGGRKEDAMDLFATISAYGLVPDVVTYRLIAENLIEEGSLGEFDGLFSAMEKSG 681

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            APN++    L++ L    D     +  A  YL ++  K     A T + +   + R + 
Sbjct: 682 TAPNSHMLNALVRRLLHRGD-----ISRAGVYLYKLDEKNFSLEASTTSMLISLYSRGEY 736

Query: 213 VDEARGL 219
              A+ L
Sbjct: 737 QPHAKSL 743


>gi|341605699|gb|AEK82952.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 75/146 (51%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+G  +E   +F  +  KG  P+V  +T +I+ YA +G  ++A+R+  RM+  G  P
Sbjct: 26  GLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKP 85

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY+V++ GL      N ++  +A  Y       G   N+  Y+++ +   +A ++DE
Sbjct: 86  DVVTYSVVVNGLCK----NGRV-EEALDYFQTCXFNGXAINSMFYSSLIDGLGKAGRIDE 140

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      ALID
Sbjct: 141 AERLFEEMSEKGCTRDSYCYN-ALID 165



 Score = 73.9 bits (180), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 71/134 (52%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ D+G  PDVV ++ V+      G+ +EAL  F     +G
Sbjct: 58  LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCXFNG 117

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            A N+  Y+ LI GL     G A  + +A++   EM  KG   ++  Y A+ +A  +  K
Sbjct: 118 XAINSMFYSSLIDGL-----GKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGK 172

Query: 213 VDEARGLLQQMKAK 226
           VDEA  L ++M+ +
Sbjct: 173 VDEAMXLFKRMEEE 186



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 60/143 (41%), Gaps = 6/143 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
            + L+ ++ +KG        + VI      G+  E   VF  M+  G  PN   Y VLI 
Sbjct: 1   CVALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLID 60

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G A +       + DA + L  M+ +G +P+  TY+ V     +  +V+EA    Q    
Sbjct: 61  GYAKSGS-----VEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCXF 115

Query: 226 KGFVPDEKAVKEALIDKRGQGFR 248
            G   +      +LID  G+  R
Sbjct: 116 NGXAIN-SMFYSSLIDGLGKAGR 137


>gi|297734265|emb|CBI15512.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 77/159 (48%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E++ +M   G+  N      +   L KDG T +  +   +++++G  PD+V +  +I +Y
Sbjct: 244 EVYEEMERFGIAPNLYTFNILTHVLCKDGDTGKVNKFLEKMEEEGFDPDIVTYNTLINSY 303

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+  +A  ++  M   GV P+  +Y  L+ GL    +G  +   +A +    MV +G
Sbjct: 304 CRKGRLDDAFYLYKIMYRRGVVPDLVSYTALMNGL--CKEGRVR---EAHQLFHRMVHRG 358

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + P+  TY  +   + +  K+ E+R LL  M   G  PD
Sbjct: 359 LSPDIVTYNTLIHGYCKEGKMQESRSLLHDMIWNGISPD 397



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 74/147 (50%), Gaps = 5/147 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K+G   EA QLF ++  +G  PD+V +  +I  Y   G+ +E+  +   M+ +G
Sbjct: 334 LMNGLCKEGRVREAHQLFHRMVHRGLSPDIVTYNTLIHGYCKEGKMQESRSLLHDMIWNG 393

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           ++P+++T  VL++G         K L  A   ++E+   G+  +   Y+ +  A  R  +
Sbjct: 394 ISPDSFTCWVLVEGYGKE----GKFLS-ALNLVVELQRFGVSISQDIYSYLIVALCRENR 448

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEAL 239
              A+ LL++M   G  P+ +   E +
Sbjct: 449 PFAAKNLLERMSKDGHKPELEIYNELI 475



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 79/161 (49%), Gaps = 8/161 (4%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D   + +   KM  EG   + V    + ++  + G   +A  L+  +  +G +PD+V++T
Sbjct: 273 DTGKVNKFLEKMEEEGFDPDIVTYNTLINSYCRKGRLDDAFYLYKIMYRRGVVPDLVSYT 332

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
           A++      G+ +EA ++F RM+  G++P+  TY  LI G           + +++  L 
Sbjct: 333 ALMNGLCKEGRVREAHQLFHRMVHRGLSPDIVTYNTLIHGYCKEGK-----MQESRSLLH 387

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
           +M+  G+ P++ T   + E + +  K   A  L+ +++  G
Sbjct: 388 DMIWNGISPDSFTCWVLVEGYGKEGKFLSALNLVVELQRFG 428



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 9/143 (6%)

Query: 93  MFDALSKD----GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRM 148
           +FD L K     G   E L+ F ++   G +P V+    ++              V+  M
Sbjct: 190 VFDMLVKAYLRMGRVREGLRSFRRMLRVGFVPTVITSNYLLNGLLKLNYTDRCWEVYEEM 249

Query: 149 LASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFV 208
              G+APN YT+ +L   L    D      G   K+L +M  +G  P+  TY  +  ++ 
Sbjct: 250 ERFGIAPNLYTFNILTHVLCKDGDT-----GKVNKFLEKMEEEGFDPDIVTYNTLINSYC 304

Query: 209 RAQKVDEARGLLQQMKAKGFVPD 231
           R  ++D+A  L + M  +G VPD
Sbjct: 305 RKGRLDDAFYLYKIMYRRGVVPD 327



 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 77/198 (38%), Gaps = 33/198 (16%)

Query: 72  RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R   ++FH+M   GL+ + V    +     K+G   E+  L   +   G  PD      +
Sbjct: 345 REAHQLFHRMVHRGLSPDIVTYNTLIHGYCKEGKMQESRSLLHDMIWNGISPDSFTCWVL 404

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA--------------AAADGN 174
           +E Y   G+   AL + + +   GV+ +   Y+ LI  L                + DG+
Sbjct: 405 VEGYGKEGKFLSALNLVVELQRFGVSISQDIYSYLIVALCRENRPFAAKNLLERMSKDGH 464

Query: 175 ----------------AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218
                              + +A    MEMV K ++PN  TY AV     R  +  E   
Sbjct: 465 KPELEIYNELIKSFCQCDCIAEALLLKMEMVDKEIKPNLATYRAVIGCLSRLSRSMEGES 524

Query: 219 LLQQMKAKGFVPDEKAVK 236
           L+ +M A G +PD +  +
Sbjct: 525 LVGEMVASGMLPDLEICR 542



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 6/145 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
           AL ++     A  L  ++   GH P++  +  +I+++       EAL + M M+   + P
Sbjct: 442 ALCRENRPFAAKNLLERMSKDGHKPELEIYNELIKSFCQCDCIAEALLLKMEMVDKEIKP 501

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           N  TY  +I  L+  +        + +  + EMV  GM P+     A+F  + R   +D+
Sbjct: 502 NLATYRAVIGCLSRLSRS-----MEGESLVGEMVASGMLPDLEICRALFYGYCRENDIDK 556

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALI 240
           A  LL    AK F   +     ALI
Sbjct: 557 AESLL-SFFAKEFQIHDTESFNALI 580


>gi|449433161|ref|XP_004134366.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Cucumis sativus]
          Length = 917

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 76/159 (47%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLT-NNAV--KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F  M  +G   NN V   +     K G  +EAL+L  ++  +G +PD+     +I   
Sbjct: 624 DVFSDMLRKGFVPNNFVYNSLIGGFCKVGKLNEALKLVREMNKRGLLPDIFTVNMIICGL 683

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+ K A+  FM M   G++P+  TY  LI G   A D     +G A   +M+M   G
Sbjct: 684 CKQGRMKLAIETFMDMCRMGLSPDIVTYNTLIDGYCKAFD-----VGGADDLMMKMSDSG 738

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             P+  TY      +   +K++ A  +L+++ + G VP+
Sbjct: 739 WEPDLTTYNIRIHGYCTVRKINRAVMILEELISVGIVPN 777



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 64/139 (46%), Gaps = 5/139 (3%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L   G   EA++L   +  KG  P VVA  ++I AY +AG  + A   +  M+  G+ P
Sbjct: 472 GLCWAGRYDEAMKLLENLLGKGIPPSVVAFNSIIAAYGNAGLEERAFYAYGIMVKFGLTP 531

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           ++ T + L+  L          L +A   L +M+ KG       +T + + + R   V+ 
Sbjct: 532 SSSTCSSLLISLVRKGS-----LDEAWIALYDMIDKGFPVTNMAFTVLLDGYFRIGAVNM 586

Query: 216 ARGLLQQMKAKGFVPDEKA 234
           A  L  +MK +G  PD  A
Sbjct: 587 AESLWNEMKGRGVFPDAVA 605



 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 66/163 (40%), Gaps = 7/163 (4%)

Query: 86  LTNNAVK-MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRV 144
           +TN A   + D   + G  + A  L+ ++K +G  PD VA  A I     +G   +A  V
Sbjct: 566 VTNMAFTVLLDGYFRIGAVNMAESLWNEMKGRGVFPDAVAFAAFINGLCISGLMTDAYDV 625

Query: 145 FMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVF 204
           F  ML  G  PN + Y  LI G           L +A K + EM  +G+ P+  T   + 
Sbjct: 626 FSDMLRKGFVPNNFVYNSLIGGFCKVGK-----LNEALKLVREMNKRGLLPDIFTVNMII 680

Query: 205 EAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGF 247
               +  ++  A      M   G  PD       LID   + F
Sbjct: 681 CGLCKQGRMKLAIETFMDMCRMGLSPD-IVTYNTLIDGYCKAF 722



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 70/156 (44%), Gaps = 10/156 (6%)

Query: 77  IFHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +F +MRT+ +  + +  F+ L     + G   +  +L   +   G + D       +   
Sbjct: 415 LFEEMRTKDIVPDGIT-FNTLVAGHYRYGKEEDGNRLLRDLSVSGLLHDSSLCDVTVAGL 473

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             AG+  EA+++   +L  G+ P+   +  +I     AA GNA +   A      MV  G
Sbjct: 474 CWAGRYDEAMKLLENLLGKGIPPSVVAFNSII-----AAYGNAGLEERAFYAYGIMVKFG 528

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
           + P++ T +++  + VR   +DEA   L  M  KGF
Sbjct: 529 LTPSSSTCSSLLISLVRKGSLDEAWIALYDMIDKGF 564



 Score = 47.4 bits (111), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 33/143 (23%), Positives = 57/143 (39%), Gaps = 11/143 (7%)

Query: 91  VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
             + DA  K+G    A + F +I+D G   + + +  +I  Y  A    +A  +F  M  
Sbjct: 362 CTIIDAFCKEGNVELARKYFDEIEDMGLSQNTIVYNIMISGYVKARDISQANLLFEEMRT 421

Query: 151 SGVAPNAYTYAVLIKG---LAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAF 207
             + P+  T+  L+ G        DGN        + L ++   G+  ++          
Sbjct: 422 KDIVPDGITFNTLVAGHYRYGKEEDGN--------RLLRDLSVSGLLHDSSLCDVTVAGL 473

Query: 208 VRAQKVDEARGLLQQMKAKGFVP 230
             A + DEA  LL+ +  KG  P
Sbjct: 474 CWAGRYDEAMKLLENLLGKGIPP 496



 Score = 44.3 bits (103), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 33/163 (20%), Positives = 65/163 (39%), Gaps = 30/163 (18%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
           A  K  +  EAL++ +++++ G  P+  A + +      AG      ++F  ++  G  P
Sbjct: 227 AFVKSEMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCP 286

Query: 156 NAYTYAVLI-----KGLAAAADGNAKILG------DAQKY-------------------L 185
           N +T+ +LI     KG     +    ++G      D   Y                   L
Sbjct: 287 NNFTFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNIVINANCLKGQSSYALHLL 346

Query: 186 MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
             M+  G +P+  T+  + +AF +   V+ AR    +++  G 
Sbjct: 347 NLMIENGCKPSIATFCTIIDAFCKEGNVELARKYFDEIEDMGL 389



 Score = 41.6 bits (96), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 54/137 (39%), Gaps = 9/137 (6%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E F  M   GL+ + V    + D   K      A  L  ++ D G  PD+  +   I  Y
Sbjct: 694 ETFMDMCRMGLSPDIVTYNTLIDGYCKAFDVGGADDLMMKMSDSGWEPDLTTYNIRIHGY 753

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
            +  +   A+ +   +++ G+ PN  TY  +I  +      +A IL      L++M    
Sbjct: 754 CTVRKINRAVMILEELISVGIVPNTVTYNTMINAVCNVILDHAMIL---TAKLLKM---A 807

Query: 193 MRPNAGTYTAVFEAFVR 209
             PN  T   +   F +
Sbjct: 808 FVPNTVTVNVLLSQFCK 824


>gi|410109875|gb|AFV61017.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           herrerae]
          Length = 395

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 73/155 (47%), Gaps = 21/155 (13%)

Query: 77  IFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           + H+   EG    A  +FDA++K GL                 P VV+   ++  Y   G
Sbjct: 129 LMHRFCKEGDIRLAQSVFDAITKWGLR----------------PSVVSFNTLMNGYIRLG 172

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196
              E  R+   M ASGV P+ YTY+VLI GL   +      + DA +   EM+ KG+ PN
Sbjct: 173 DLDEGFRLKNAMHASGVQPDVYTYSVLINGLCKESK-----MDDANELFDEMLDKGLVPN 227

Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             T+T + +   +  +VD A  + +QM ++   PD
Sbjct: 228 GVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 262



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 79/195 (40%), Gaps = 35/195 (17%)

Query: 63  VVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM 119
           +  E   D  N  E+F +M  +GL  N V    + D   K+G    A++++ Q+  +   
Sbjct: 203 LCKESKMDDAN--ELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 260

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD------- 172
           PD++ +  +       G  K+A  +   M   G+ P+  TY  LI G     D       
Sbjct: 261 PDLITYNTLTYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDMETAFEH 320

Query: 173 ---------------GNAKILG--------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
                            A I G        DA+K L EM+  G++PN GTYT +   F +
Sbjct: 321 QKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVGLKPNXGTYTMIINEFCK 380

Query: 210 AQKVDEARGLLQQMK 224
              V     LL++M+
Sbjct: 381 KGDVWTGSKLLKEMQ 395



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 77/158 (48%), Gaps = 6/158 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K+    +A +LF ++ DKG +P+ V  T +I+ +   G+   A+ ++ +ML+  
Sbjct: 199 LINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQS 258

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           ++P+  TY  L  GL    D     L  A   + EM  KG++P+  TYT + +   +   
Sbjct: 259 LSPDLITYNTLTYGLCKKGD-----LKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGD 313

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGV 250
           ++ A    ++M  +    D+  V  ALI    Q  R V
Sbjct: 314 METAFEHQKRMIQENIRLDD-VVYTALISGLCQEGRSV 350


>gi|341606831|gb|AEK83518.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606833|gb|AEK83519.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606835|gb|AEK83520.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606839|gb|AEK83522.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606841|gb|AEK83523.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606843|gb|AEK83524.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606845|gb|AEK83525.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606847|gb|AEK83526.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606849|gb|AEK83527.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606851|gb|AEK83528.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606853|gb|AEK83529.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606855|gb|AEK83530.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606857|gb|AEK83531.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606859|gb|AEK83532.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606861|gb|AEK83533.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606863|gb|AEK83534.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606865|gb|AEK83535.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606867|gb|AEK83536.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606871|gb|AEK83538.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606873|gb|AEK83539.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606875|gb|AEK83540.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606877|gb|AEK83541.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606879|gb|AEK83542.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606881|gb|AEK83543.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606883|gb|AEK83544.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606885|gb|AEK83545.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606887|gb|AEK83546.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606889|gb|AEK83547.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606891|gb|AEK83548.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606893|gb|AEK83549.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606895|gb|AEK83550.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606897|gb|AEK83551.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606899|gb|AEK83552.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606901|gb|AEK83553.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606903|gb|AEK83554.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606905|gb|AEK83555.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606907|gb|AEK83556.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606909|gb|AEK83557.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606911|gb|AEK83558.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606913|gb|AEK83559.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606915|gb|AEK83560.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606917|gb|AEK83561.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606919|gb|AEK83562.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606921|gb|AEK83563.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606923|gb|AEK83564.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606925|gb|AEK83565.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606927|gb|AEK83566.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606929|gb|AEK83567.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606931|gb|AEK83568.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606933|gb|AEK83569.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606935|gb|AEK83570.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606937|gb|AEK83571.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606939|gb|AEK83572.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606941|gb|AEK83573.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606943|gb|AEK83574.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606945|gb|AEK83575.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606947|gb|AEK83576.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606949|gb|AEK83577.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606951|gb|AEK83578.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606953|gb|AEK83579.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606957|gb|AEK83581.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606959|gb|AEK83582.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606961|gb|AEK83583.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606963|gb|AEK83584.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606965|gb|AEK83585.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606967|gb|AEK83586.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606969|gb|AEK83587.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606971|gb|AEK83588.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606973|gb|AEK83589.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
 gi|341606975|gb|AEK83590.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
          Length = 208

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 75/146 (51%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+G  +E   +F  +  KG  P+V  +T +I+ YA +G  ++A+R+  RM+  G  P
Sbjct: 23  GLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKP 82

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY+V++ GL      N ++  +A  Y       G   N+  Y+++ +   +A ++DE
Sbjct: 83  DVVTYSVVVNGLCK----NGRV-EEALDYFQTCRFNGFAINSMFYSSLIDGLGKAGRIDE 137

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      ALID
Sbjct: 138 AERLFEEMSEKGCTRDSYCYN-ALID 162



 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 71/134 (52%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ D+G  PDVV ++ V+      G+ +EAL  F     +G
Sbjct: 55  LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNG 114

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            A N+  Y+ LI GL     G A  + +A++   EM  KG   ++  Y A+ +A  +  K
Sbjct: 115 FAINSMFYSSLIDGL-----GKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGK 169

Query: 213 VDEARGLLQQMKAK 226
           VDEA  L ++M+ +
Sbjct: 170 VDEAMTLFKRMEEE 183



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 6/140 (4%)

Query: 109 LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
           L+ ++ +KG        + VI      G+  E   VF  M+  G  PN   Y VLI G A
Sbjct: 1   LYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYA 60

Query: 169 AAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
            +       + DA + L  M+ +G +P+  TY+ V     +  +V+EA    Q  +  GF
Sbjct: 61  KSGS-----VEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNGF 115

Query: 229 VPDEKAVKEALIDKRGQGFR 248
             +      +LID  G+  R
Sbjct: 116 AIN-SMFYSSLIDGLGKAGR 134


>gi|224086982|ref|XP_002308024.1| predicted protein [Populus trichocarpa]
 gi|222854000|gb|EEE91547.1| predicted protein [Populus trichocarpa]
          Length = 789

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 49/156 (31%), Positives = 74/156 (47%), Gaps = 13/156 (8%)

Query: 84  EGLTNNAVK--------MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASA 135
           E L N  +K        +     K GLT +A++ F  ++D    PDV  +  +++     
Sbjct: 115 EALKNGGIKVHNDAFFVLIKVYLKMGLTDKAMETFGSMRDFDCTPDVYTYNMILDVLIQK 174

Query: 136 GQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP 195
                AL V+ RM+     PN  T+++LI GL  +  GN K   DA     EM  +G+ P
Sbjct: 175 NFLLLALTVYTRMMKLNCLPNVATFSILIDGLCKS--GNVK---DALHLFDEMTQRGILP 229

Query: 196 NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +A TY  V     R+++VD+A  L  +MK  G  PD
Sbjct: 230 DAFTYCVVISGLCRSKRVDDAYRLFDKMKDSGVGPD 265



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/176 (28%), Positives = 80/176 (45%), Gaps = 21/176 (11%)

Query: 72  RNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQI-------------KD 115
           R+ QEIF++M   G   +AV    + D L K G   +A  LF ++             + 
Sbjct: 423 RDAQEIFNEMEKLGCYPSAVTFNSLIDGLCKTGQLEKAHLLFYKMEIGRNPSLFLRLSQG 482

Query: 116 KGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNA 175
             H+ D  +   ++E    +G   +A R+ M++  SG AP  YTY +L+ G     + N 
Sbjct: 483 PSHVLDSASLQKMVEQLCDSGLIHKAYRILMQLADSGDAPGIYTYNILVNGFCKLGNFNG 542

Query: 176 KILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
                A K   EM  KG+ P+  TY  +    +R Q+ ++A  +  QM+  G  PD
Sbjct: 543 -----AYKLFREMQFKGLSPDTVTYGTLINGLLRFQREEDAYKVFDQMEKNGCTPD 593



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E F  MR    T +      + D L +      AL ++ ++     +P+V   + +I+  
Sbjct: 147 ETFGSMRDFDCTPDVYTYNMILDVLIQKNFLLLALTVYTRMMKLNCLPNVATFSILIDGL 206

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             +G  K+AL +F  M   G+ P+A+TY V+I GL       +K + DA +   +M   G
Sbjct: 207 CKSGNVKDALHLFDEMTQRGILPDAFTYCVVISGLC-----RSKRVDDAYRLFDKMKDSG 261

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + P+  T  A+   F    +VDEA  LL+  +  G+V D
Sbjct: 262 VGPDFVTCNALLNGFCMLDRVDEAFSLLRLFEKDGYVLD 300



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 45/169 (26%), Positives = 68/169 (40%), Gaps = 30/169 (17%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K G   +AL LF ++  +G +PD   +  VI     + +  +A R+F +M  SG
Sbjct: 202 LIDGLCKSGNVKDALHLFDEMTQRGILPDAFTYCVVISGLCRSKRVDDAYRLFDKMKDSG 261

Query: 153 VAPNAYTYAVLIKGLAA--------------AADG----------------NAKILGDAQ 182
           V P+  T   L+ G                   DG                 AK   D Q
Sbjct: 262 VGPDFVTCNALLNGFCMLDRVDEAFSLLRLFEKDGYVLDVRGYSCLIRGLFRAKRYEDVQ 321

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
               +M+   ++P+   YT + +    A KV +A  LL +M   G VPD
Sbjct: 322 LLYRKMIEDNVKPDVYLYTIMMKGLAEAGKVRDALELLNEMTESGVVPD 370



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 65/132 (49%), Gaps = 5/132 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M   L++ G   +AL+L  ++ + G +PD V +  +I+ +   G   EA  + + +    
Sbjct: 342 MMKGLAEAGKVRDALELLNEMTESGVVPDTVCYNVLIKGFCDMGLLSEARSLQLEISRHD 401

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN  TY++LI G+         +  DAQ+   EM   G  P+A T+ ++ +   +  +
Sbjct: 402 CFPNVKTYSILISGMCRNG-----LTRDAQEIFNEMEKLGCYPSAVTFNSLIDGLCKTGQ 456

Query: 213 VDEARGLLQQMK 224
           +++A  L  +M+
Sbjct: 457 LEKAHLLFYKME 468



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 5/128 (3%)

Query: 92  KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
           KM + L   GL H+A ++  Q+ D G  P +  +  ++  +   G    A ++F  M   
Sbjct: 494 KMVEQLCDSGLIHKAYRILMQLADSGDAPGIYTYNILVNGFCKLGNFNGAYKLFREMQFK 553

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           G++P+  TY  LI GL            DA K   +M   G  P+A  Y  +     R  
Sbjct: 554 GLSPDTVTYGTLINGLLRFQREE-----DAYKVFDQMEKNGCTPDAAVYRTMMTWMCRRM 608

Query: 212 KVDEARGL 219
           ++  A  L
Sbjct: 609 ELPRAFSL 616



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 9/140 (6%)

Query: 109 LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
           L+ ++ +    PDV  +T +++  A AG+ ++AL +   M  SGV P+   Y VLIKG  
Sbjct: 323 LYRKMIEDNVKPDVYLYTIMMKGLAEAGKVRDALELLNEMTESGVVPDTVCYNVLIKGFC 382

Query: 169 AAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
                +  +L +A+   +E+      PN  TY+ +     R     +A+ +  +M+  G 
Sbjct: 383 -----DMGLLSEARSLQLEISRHDCFPNVKTYSILISGMCRNGLTRDAQEIFNEMEKLGC 437

Query: 229 VPDEKAVKEALID---KRGQ 245
            P       +LID   K GQ
Sbjct: 438 YPSAVTFN-SLIDGLCKTGQ 456



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/160 (23%), Positives = 71/160 (44%), Gaps = 8/160 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F KM+  G+  + V    + +         EA  L    +  G++ DV  ++ +I    
Sbjct: 253 LFDKMKDSGVGPDFVTCNALLNGFCMLDRVDEAFSLLRLFEKDGYVLDVRGYSCLIRGLF 312

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            A + ++   ++ +M+   V P+ Y Y +++KGLA A       + DA + L EM   G+
Sbjct: 313 RAKRYEDVQLLYRKMIEDNVKPDVYLYTIMMKGLAEAGK-----VRDALELLNEMTESGV 367

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK 233
            P+   Y  + + F     + EAR L  ++      P+ K
Sbjct: 368 VPDTVCYNVLIKGFCDMGLLSEARSLQLEISRHDCFPNVK 407


>gi|125570756|gb|EAZ12271.1| hypothetical protein OsJ_02159 [Oryza sativa Japonica Group]
          Length = 596

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 87/174 (50%), Gaps = 13/174 (7%)

Query: 84  EGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALR 143
           +G+T N   +     + G   +AL LF  +  +   PD+V+HT V++A   AG+ ++A R
Sbjct: 244 DGVTYN--TLLSGYCRRGRLQDALHLFDVMPYRRVQPDLVSHTVVMDALCKAGRVRDARR 301

Query: 144 VFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAV 203
           +F RM+ SG++P+A  Y+VLI G       N   L +A+  LMEMVG G          V
Sbjct: 302 MFDRMIQSGLSPDAVAYSVLIAGYC-----NEGRLREARFLLMEMVGCGFSSEGFALKVV 356

Query: 204 FEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI-----DKRGQGFRGVIN 252
            E+ V+  K+     ++  ++  G V   ++    LI     D R    RG+++
Sbjct: 357 VESHVKFSKLLTCLNMVAPIRKHGVVIPSQSYS-CLIGALCEDMRPNAARGLLH 409



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 64/125 (51%), Gaps = 5/125 (4%)

Query: 112 QIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA 171
           +++++G  PD V +  ++  Y   G+ ++AL +F  M    V P+  ++ V++  L  A 
Sbjct: 235 ELEEQGFEPDGVTYNTLLSGYCRRGRLQDALHLFDVMPYRRVQPDLVSHTVVMDALCKA- 293

Query: 172 DGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            G  +   DA++    M+  G+ P+A  Y+ +   +    ++ EAR LL +M   GF  +
Sbjct: 294 -GRVR---DARRMFDRMIQSGLSPDAVAYSVLIAGYCNEGRLREARFLLMEMVGCGFSSE 349

Query: 232 EKAVK 236
             A+K
Sbjct: 350 GFALK 354



 Score = 46.2 bits (108), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 60/142 (42%), Gaps = 16/142 (11%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +  AL +D   + A  L   + + GH P +  +  +IE +      +EAL V + M++  
Sbjct: 391 LIGALCEDMRPNAARGLLHWMIEDGHSPSLAIYNMIIECFCQCDIVEEALDVKVEMISRE 450

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILG---DAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
           V  +  TY  LI             LG   D +  + EM+  G +PN    +A+   F +
Sbjct: 451 VRLDFNTYRALITCFCR--------LGRSLDGESIMAEMIESGFQPNEAICSALVCGFCK 502

Query: 210 AQKVDEARGLLQQMKAKGFVPD 231
              ++ A  +L     + FV D
Sbjct: 503 EGALNRAELIL-----RAFVLD 519



 Score = 44.3 bits (103), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 30/135 (22%), Positives = 61/135 (45%), Gaps = 6/135 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
            L + A I+  G +    +++ +I A     +   A  +   M+  G +P+   Y ++I+
Sbjct: 369 CLNMVAPIRKHGVVIPSQSYSCLIGALCEDMRPNAARGLLHWMIEDGHSPSLAIYNMIIE 428

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
                      I+ +A    +EM+ + +R +  TY A+   F R  +  +   ++ +M  
Sbjct: 429 CFC-----QCDIVEEALDVKVEMISREVRLDFNTYRALITCFCRLGRSLDGESIMAEMIE 483

Query: 226 KGFVPDEKAVKEALI 240
            GF P+E A+  AL+
Sbjct: 484 SGFQPNE-AICSALV 497



 Score = 42.4 bits (98), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 27/44 (61%)

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           M   G+RPNA T+  +  A  R +  + A+G L++++ +GF PD
Sbjct: 201 MARAGVRPNAHTFNILVAALCRGEDAERAQGFLEELEEQGFEPD 244


>gi|255570422|ref|XP_002526170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534547|gb|EEF36246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 504

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 85/159 (53%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+  +M +E  + N      + D+L KDGL  + L++F ++ + G  P+V+ ++++I   
Sbjct: 65  ELHRRMLSEICSGNFFTYGLVIDSLCKDGLAIKGLKMFREMINMGICPNVIVYSSLINGL 124

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+ +EA+ +F  M++ G+  N  TY  LI   A+   G  K   +A +   +MVG+G
Sbjct: 125 CRVGKLREAVNLFDEMVSQGIKANVITYNSLIH--ASCRFGLWK---EATRTFSQMVGEG 179

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + P+  T+T + +   +  KV EA  + + M  +G  P+
Sbjct: 180 ILPDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPN 218



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 80/157 (50%), Gaps = 8/157 (5%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M ++G+  N +    +  A  + GL  EA + F+Q+  +G +PDVV  T +I+  +
Sbjct: 136 LFDEMVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILPDVVTFTTLIDHLS 195

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G+ +EA ++F  M+  G APN  TY  L+ GL          +  A +    MV +G+
Sbjct: 196 KKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQ-----MDHAVRLFEVMVERGI 250

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           + +  +Y  +   +  + K +EA  L ++M+ +   P
Sbjct: 251 KIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEELTP 287



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 80/166 (48%), Gaps = 8/166 (4%)

Query: 72  RNLQEIFHKMRTEGLT---NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R  +E+F+ M+  G +   +    + D L K+G   EA+ +F  +K   + P +  ++ +
Sbjct: 306 RTAKELFNNMQICGQSPSLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKYKPSIRIYSIL 365

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I     A + + A+ +F  +   G+ PN  TY ++I GL          L +A++  ++M
Sbjct: 366 IGGMFQARRWESAMEIFDEIPTVGLVPNIVTYNIMINGLCKEGK-----LLEAERLFVQM 420

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
              G   +  ++  +   F++  +V +A   L++M+ K F P++  
Sbjct: 421 EESGCEQDEISFNFIIRGFLQENQVQKAMEFLKRMREKNFSPNDSV 466



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F +M   G+  N +    + + L + G   EA+ LF ++  +G   +V+ + ++I A 
Sbjct: 100 KMFREMINMGICPNVIVYSSLINGLCRVGKLREAVNLFDEMVSQGIKANVITYNSLIHAS 159

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G  KEA R F +M+  G+ P+  T+  LI  L+         + +A K    M+ +G
Sbjct: 160 CRFGLWKEATRTFSQMVGEGILPDVVTFTTLIDHLSKKGK-----VQEAYKIFELMIKQG 214

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             PN  TY ++        ++D A  L + M  +G   D
Sbjct: 215 EAPNIVTYNSLLNGLCLHHQMDHAVRLFEVMVERGIKID 253



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 79/158 (50%), Gaps = 8/158 (5%)

Query: 76  EIFHKMRTEGLTNNAVKMFDALSKDGLTHE---ALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +IF  M  +G   N V     L+   L H+   A++LF  + ++G   DV+++  +I  Y
Sbjct: 205 KIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVRLFEVMVERGIKIDVISYNTLINGY 264

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
            ++G+ +EA+ +F +M    + P+  TY +L+K L      N +I   A++    M   G
Sbjct: 265 CTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALYQ----NGRI-RTAKELFNNMQICG 319

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
             P+  TYT + +   +   ++EA  + + +K+  + P
Sbjct: 320 QSPSLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKYKP 357



 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 5/132 (3%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            +  +G   +AL+LF ++   G   D++ +  +I A     Q + A+ +  RML+   + 
Sbjct: 18  GMCFEGKVMDALELFDKMTRSGFQGDILLYGYLINALRKTRQARRAVELHRRMLSEICSG 77

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           N +TY ++I  L    DG A       K   EM+  G+ PN   Y+++     R  K+ E
Sbjct: 78  NFFTYGLVIDSL--CKDGLAI---KGLKMFREMINMGICPNVIVYSSLINGLCRVGKLRE 132

Query: 216 ARGLLQQMKAKG 227
           A  L  +M ++G
Sbjct: 133 AVNLFDEMVSQG 144



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 71/159 (44%), Gaps = 8/159 (5%)

Query: 77  IFHKMRTEGLT---NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F KM+ E LT        +  AL ++G    A +LF  ++  G  P +  +T +++   
Sbjct: 276 LFRKMQYEELTPSITTYTILLKALYQNGRIRTAKELFNNMQICGQSPSLDTYTVLLDGLC 335

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G  +EA+ VF  + +    P+   Y++LI G+  A    +     A +   E+   G+
Sbjct: 336 KNGCIEEAIDVFRSLKSIKYKPSIRIYSILIGGMFQARRWES-----AMEIFDEIPTVGL 390

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
            PN  TY  +     +  K+ EA  L  QM+  G   DE
Sbjct: 391 VPNIVTYNIMINGLCKEGKLLEAERLFVQMEESGCEQDE 429



 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 3/99 (3%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           EIF ++ T GL  N V    M + L K+G   EA +LF Q+++ G   D ++   +I  +
Sbjct: 380 EIFDEIPTVGLVPNIVTYNIMINGLCKEGKLLEAERLFVQMEESGCEQDEISFNFIIRGF 439

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA 171
               Q ++A+    RM     +PN     +L+   AA A
Sbjct: 440 LQENQVQKAMEFLKRMREKNFSPNDSVTLMLVNLYAADA 478


>gi|302826367|ref|XP_002994672.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
 gi|300137182|gb|EFJ04264.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
          Length = 816

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 50/162 (30%), Positives = 71/162 (43%), Gaps = 5/162 (3%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           D R+L E   K + +        +   L K G   EA ++   +   G  PDVV +  ++
Sbjct: 525 DARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLV 584

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
             +  AGQ + A  +   M+A G+APN  TY  L+ GL       A  L +A     +M 
Sbjct: 585 HGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLC-----KANRLPEACGVFAQMK 639

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             G  PN  TYTA+   F  A +VD    L  +M   G  PD
Sbjct: 640 SSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPD 681



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 49/172 (28%), Positives = 75/172 (43%), Gaps = 40/172 (23%)

Query: 95  DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS-------------------- 134
           D   + G   EA +L  ++ D GH+PDVV ++ +I    S                    
Sbjct: 480 DQACQRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCK 539

Query: 135 ---------------AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
                          AG+ KEA  V   M++SG +P+  TY  L+ G   A         
Sbjct: 540 PTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTER---- 595

Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            A++ L +MV +G+ PN  TYTA+     +A ++ EA G+  QMK+ G  P+
Sbjct: 596 -ARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPN 646



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 7/163 (4%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+F  M   G   + V    M DA  K G+  EA  L  ++ + GH+PDVV +  V++ 
Sbjct: 378 RELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDG 437

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKI----LGDAQKYLME 187
              + + +EAL +F  M   G  PN  ++  +I GL   +  +       L +A + L  
Sbjct: 438 LCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKR 497

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           M   G  P+  TY+ +        +VD+AR LL+ M  +   P
Sbjct: 498 MTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKP 540



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 71/136 (52%), Gaps = 5/136 (3%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L ++    EA+Q+F ++ ++   PD  ++  +I+  A AG+  +A  +F ++L SGV P
Sbjct: 297 GLCQNDRIDEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTP 356

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +   Y  LI GL  A         DA++   +M  +G  P+  TY  + +A  +   ++E
Sbjct: 357 STVAYTSLIHGLCMANS-----FDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEE 411

Query: 216 ARGLLQQMKAKGFVPD 231
           A  L+++M   G VPD
Sbjct: 412 ACDLIKKMIEDGHVPD 427



 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/162 (25%), Positives = 77/162 (47%), Gaps = 8/162 (4%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F KM    ++ ++     + D L+K G  ++A  LF ++   G  P  VA+T++I   
Sbjct: 309 QMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGL 368

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             A    +A  +F  M   G  P+  TY V+I      A     +L +A   + +M+  G
Sbjct: 369 CMANSFDDARELFADMNRRGCPPSPVTYNVMID-----ASCKRGMLEEACDLIKKMIEDG 423

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
             P+  TY  V +   ++ +V+EA  L  +M+  G  P+ ++
Sbjct: 424 HVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRS 465



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/161 (27%), Positives = 71/161 (44%), Gaps = 15/161 (9%)

Query: 93  MFDALSKDGLTHEALQLFAQ------IKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFM 146
           + D L K G   EA++LF               P +  +  VI       +  EA+++F 
Sbjct: 253 VLDGLCKAGRVEEAVRLFGDRELPSSSSSSSSPPSLRGYNIVILGLCQNDRIDEAVQMFE 312

Query: 147 RMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEA 206
           +M    V+P++++Y +LI GLA A       L DA+    +++  G+ P+   YT++   
Sbjct: 313 KMNERNVSPDSWSYGILIDGLAKAGK-----LNDARNLFQKLLHSGVTPSTVAYTSLIHG 367

Query: 207 FVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID---KRG 244
              A   D+AR L   M  +G  P        +ID   KRG
Sbjct: 368 LCMANSFDDARELFADMNRRG-CPPSPVTYNVMIDASCKRG 407



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 51/183 (27%), Positives = 84/183 (45%), Gaps = 20/183 (10%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+   M   GL  N V    +   L K     EA  +FAQ+K  G  P++  +TA+I  
Sbjct: 597 RELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILG 656

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           + SAGQ    L++F  M+ +G++P+   Y  L   L  +        G + + L E++ +
Sbjct: 657 FCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKS--------GRSARAL-EILRE 707

Query: 192 G---MRPNA---GTYTAVFEAFVRAQKVDEARGLLQQMKAKGFV--PDEKAVKEALIDKR 243
           G   +R  A     Y    +  + A K++ A G ++ M   G +  P+  A   A + K 
Sbjct: 708 GRESLRSEAWGDEVYRFAVDGLLEAGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKS 767

Query: 244 GQG 246
           GQG
Sbjct: 768 GQG 770



 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 60/115 (52%), Gaps = 6/115 (5%)

Query: 116 KGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNA 175
           +G  P  +  T+VI+ + + G+  EA+++F  ++    +P    Y VLI  L+   +  A
Sbjct: 4   QGIFPAPLLFTSVIQGWCNVGRTFEAVKIF-SLMEECHSPYPDVYNVLIDSLSKRQETEA 62

Query: 176 KILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
                 +K +  MV +G  P++ T+T +     +A K+DEA  ++ +M+++   P
Sbjct: 63  -----VKKMVQVMVDRGCFPDSFTFTTILCGLCKAGKMDEAELVMDEMRSRMIPP 112


>gi|356499433|ref|XP_003518545.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Glycine max]
          Length = 905

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 82/164 (50%), Gaps = 8/164 (4%)

Query: 72  RNLQEIFHKMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           ++  ++F++M+ +GL   T     + D   K G  ++A QL  ++K KG  P VV + +V
Sbjct: 603 KDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSV 662

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I+  A   +  EA  +F    +  V  N   Y+ LI G      G    + +A   L E+
Sbjct: 663 IDGLAKIDRLDEAYMLFEEAKSKAVDLNVVVYSSLIDGF-----GKVGRIDEAYLILEEL 717

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           + KG+ PN  T+  + +A V+A+++DEA    Q MK     P+E
Sbjct: 718 MQKGLTPNTYTWNCLLDALVKAEEIDEALVCFQNMKNLKCPPNE 761



 Score = 73.6 bits (179), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 77/168 (45%), Gaps = 9/168 (5%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F + +++ +  N V    + D   K G   EA  +  ++  KG  P+      +++A  
Sbjct: 678 LFEEAKSKAVDLNVVVYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNTYTWNCLLDALV 737

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            A +  EAL  F  M      PN  TY++++ GL      N   +     +  EM  +G+
Sbjct: 738 KAEEIDEALVCFQNMKNLKCPPNEVTYSIMVNGLCKVRKFNKAFV-----FWQEMQKQGL 792

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           +PN  TYT +     R   V EA+ L ++ K+ G +PD  A   A+I+
Sbjct: 793 KPNTITYTTMISGLARVGNVLEAKDLFERFKSSGGIPD-SACYNAMIE 839



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 8/157 (5%)

Query: 81  MRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ 137
           M+  GL  N +    M D L K     EA  +F  +  K   PD V   ++I+     G+
Sbjct: 437 MKEAGLFPNIITVNIMIDRLCKAQRLDEACSIFLGLDHKVCTPDSVTFCSLIDGLGRHGK 496

Query: 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA 197
             +A  ++ +ML SG  PNA  Y  LI+              D  K   EM+ +G  P+ 
Sbjct: 497 VNDAYMLYEKMLDSGQTPNAVVYTSLIRNFFKCGRKE-----DGHKIYKEMMHRGCSPDL 551

Query: 198 GTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
                  +   +A ++++ R L +++KA+G  PD ++
Sbjct: 552 MLLNNYMDCVFKAGEIEKGRALFEEIKAQGLTPDVRS 588



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 82/174 (47%), Gaps = 9/174 (5%)

Query: 75  QEIFHKMRTEGLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            +I+ +M   G + + + +    D + K G   +   LF +IK +G  PDV +++ +I  
Sbjct: 536 HKIYKEMMHRGCSPDLMLLNNYMDCVFKAGEIEKGRALFEEIKAQGLTPDVRSYSILIHG 595

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G  K+  ++F  M   G+  +   Y ++I G   +   N      A + L EM  K
Sbjct: 596 LVKGGFSKDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNK-----AYQLLEEMKTK 650

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
           G++P   TY +V +   +  ++DEA  L ++ K+K  V     V  +LID  G+
Sbjct: 651 GLQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKA-VDLNVVVYSSLIDGFGK 703



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 78/157 (49%), Gaps = 8/157 (5%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           ++ KM   G T NAV    +     K G   +  +++ ++  +G  PD++     ++   
Sbjct: 503 LYEKMLDSGQTPNAVVYTSLIRNFFKCGRKEDGHKIYKEMMHRGCSPDLMLLNNYMDCVF 562

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG+ ++   +F  + A G+ P+  +Y++LI GL     G +K   D  K   EM  +G+
Sbjct: 563 KAGEIEKGRALFEEIKAQGLTPDVRSYSILIHGLVKG--GFSK---DTYKLFYEMKEQGL 617

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
             +   Y  V + F ++ KV++A  LL++MK KG  P
Sbjct: 618 HLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQP 654



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 90/217 (41%), Gaps = 51/217 (23%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQI------------------- 113
           + FH+++++GL  + V    M   L K     EA++LF ++                   
Sbjct: 293 KFFHELKSQGLVPDDVTFTSMIGVLCKAERVDEAVELFEELDSNKSVPCVYAYNTMIMGY 352

Query: 114 ----------------KDKGHMPDVVAHTAVIEAYASAGQGKEALRVF--MRMLASGVAP 155
                           K KG +P V+A+  ++      G+ +EALR+   M+M A   AP
Sbjct: 353 GSVGKFNEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRILEAMKMDA---AP 409

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           N  +Y +LI  L  A +  A     A K    M   G+ PN  T   + +   +AQ++DE
Sbjct: 410 NLTSYNILIDMLCKAGELEA-----ALKVQDSMKEAGLFPNIITVNIMIDRLCKAQRLDE 464

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVIN 252
           A  +   +  K   PD      +LID  G G  G +N
Sbjct: 465 ACSIFLGLDHKVCTPDSVTFC-SLID--GLGRHGKVN 498



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K G    AL++   +K+ G  P+++    +I+    A +  EA  +F+ +    
Sbjct: 417 LIDMLCKAGELEAALKVQDSMKEAGLFPNIITVNIMIDRLCKAQRLDEACSIFLGLDHKV 476

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P++ T+  LI GL     G    + DA     +M+  G  PNA  YT++   F +  +
Sbjct: 477 CTPDSVTFCSLIDGL-----GRHGKVNDAYMLYEKMLDSGQTPNAVVYTSLIRNFFKCGR 531

Query: 213 VDEARGLLQQMKAKGFVPD 231
            ++   + ++M  +G  PD
Sbjct: 532 KEDGHKIYKEMMHRGCSPD 550



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 5/131 (3%)

Query: 94  FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGV 153
            D   K G    A + F ++K +G +PD V  T++I     A +  EA+ +F  + ++  
Sbjct: 279 IDCFGKVGKVDMAWKFFHELKSQGLVPDDVTFTSMIGVLCKAERVDEAVELFEELDSNKS 338

Query: 154 APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV 213
            P  Y Y  +I G  +    N     +A   L     KG  P+   Y  +     R  KV
Sbjct: 339 VPCVYAYNTMIMGYGSVGKFN-----EAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKV 393

Query: 214 DEARGLLQQMK 224
           +EA  +L+ MK
Sbjct: 394 EEALRILEAMK 404



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 8/130 (6%)

Query: 104 HEA---LQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
           HEA   L L  Q+++ G+   V   T +I  +A  G+   AL +   M ++    +   Y
Sbjct: 216 HEADPMLTLLRQMQEIGYEVTVHLFTTLICVFAREGRVDAALSLLDEMKSNSFNADLVLY 275

Query: 161 AVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
            V I        G    +  A K+  E+  +G+ P+  T+T++     +A++VDEA  L 
Sbjct: 276 NVCIDCF-----GKVGKVDMAWKFFHELKSQGLVPDDVTFTSMIGVLCKAERVDEAVELF 330

Query: 221 QQMKAKGFVP 230
           +++ +   VP
Sbjct: 331 EELDSNKSVP 340



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 67/139 (48%), Gaps = 6/139 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L + G   EAL++   +K     P++ ++  +I+    AG+ + AL+V   M  +G
Sbjct: 383 ILTCLGRKGKVEEALRILEAMKMDAA-PNLTSYNILIDMLCKAGELEAALKVQDSMKEAG 441

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN  T  ++I  L       A+ L +A    + +  K   P++ T+ ++ +   R  K
Sbjct: 442 LFPNIITVNIMIDRLC-----KAQRLDEACSIFLGLDHKVCTPDSVTFCSLIDGLGRHGK 496

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V++A  L ++M   G  P+
Sbjct: 497 VNDAYMLYEKMLDSGQTPN 515



 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 5/124 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M + L K    ++A   + +++ +G  P+ + +T +I   A  G   EA  +F R  +SG
Sbjct: 767 MVNGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTTMISGLARVGNVLEAKDLFERFKSSG 826

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P++  Y  +I+GL+     NA    DA     E   KG R  + T   + +A  +A  
Sbjct: 827 GIPDSACYNAMIEGLS-----NANKAMDAYILFEETRLKGCRIYSKTCVVLLDALHKADC 881

Query: 213 VDEA 216
           +++A
Sbjct: 882 LEQA 885



 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 64/162 (39%), Gaps = 8/162 (4%)

Query: 74  LQEIFHKMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           L++I  +M   G     N  ++M  +  K     EA  +   ++     P   A+T +I 
Sbjct: 151 LEQILEEMSMAGFGPSNNTCIEMVASFVKSRKLREAFGVIETMRKFKFRPAYSAYTTLIG 210

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
           A ++A +    L +  +M   G     + +  LI   A     +A     A   L EM  
Sbjct: 211 ALSAAHEADPMLTLLRQMQEIGYEVTVHLFTTLICVFAREGRVDA-----ALSLLDEMKS 265

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
                +   Y    + F +  KVD A     ++K++G VPD+
Sbjct: 266 NSFNADLVLYNVCIDCFGKVGKVDMAWKFFHELKSQGLVPDD 307


>gi|147817754|emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]
          Length = 1060

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 79/170 (46%), Gaps = 9/170 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +F  MR  G+  N      M D   K     +AL+L+ ++   G +P+VV    +I+ 
Sbjct: 248 ESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYXEMLGDGLLPNVVTFGILIDG 307

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
                +   A +  + M + GV PN + Y  LI G   A +     L +A     E+   
Sbjct: 308 LCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGN-----LSEALSLHSEIEKH 362

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
            + P+  TY+ + +      +++EA GLLQ+MK KGF+P+       LID
Sbjct: 363 EILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPN-AVTYNTLID 411



 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 89/199 (44%), Gaps = 34/199 (17%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E++ +M  +GL  N V    + D L K      A +    +   G +P++  +  +I+ Y
Sbjct: 284 ELYXEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGY 343

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAA-----ADG-------------- 173
             AG   EAL +   +    + P+ +TY++LIKGL        ADG              
Sbjct: 344 CKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNA 403

Query: 174 ---NAKILGDAQKYLME--------MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
              N  I G  ++  ME        M  KG+ PN  T++ + + + +A K++ A GL  +
Sbjct: 404 VTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTE 463

Query: 223 MKAKGFVPDEKAVKEALID 241
           M  KG +PD  A   ALID
Sbjct: 464 MVIKGLLPDVVAYT-ALID 481



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 77/172 (44%), Gaps = 21/172 (12%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+  +M  +G+  N +    + D   K G    A+ L+ ++  KG +PDVVA+TA+I+ +
Sbjct: 424 EVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGH 483

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G  KEA R+   M  +G+ PN +T + LI GL    DG    + DA K  +   G  
Sbjct: 484 FKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGL--CKDGR---ISDAIKLFLAKTGTD 538

Query: 193 -------------MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
                          PN   YTA+ +      ++ +A      M+  G  PD
Sbjct: 539 TTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPD 590



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 78/171 (45%), Gaps = 9/171 (5%)

Query: 74  LQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           + +++  M   G + N V    + D   + G   +A +LF ++ +K   P VV +T +I 
Sbjct: 177 MWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIR 236

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
                 +  EA  +F  M  SG+ PN YTY  ++ G    A      +  A +   EM+G
Sbjct: 237 GLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAH-----VKKALELYXEMLG 291

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
            G+ PN  T+  + +   +  ++  AR  L  M + G VP+   V   LID
Sbjct: 292 DGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPN-IFVYNCLID 341



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 74/143 (51%), Gaps = 8/143 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +M+ +G   NAV    + D   K+G   +A+++ +Q+ +KG  P+++  + +I+ Y 
Sbjct: 390 LLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYC 449

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG+ + A+ ++  M+  G+ P+   Y  LI G     DGN K   +A +   EM   G+
Sbjct: 450 KAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDG--HFKDGNTK---EAFRLHKEMQEAGL 504

Query: 194 RPNAGTYTAVFEAFVRAQKVDEA 216
            PN  T + + +   +  ++ +A
Sbjct: 505 HPNVFTLSCLIDGLCKDGRISDA 527



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 5/155 (3%)

Query: 77  IFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           +++KM           + D L K G      +++  +  +G  P+VV +  +I+     G
Sbjct: 148 VYYKMDVLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQG 207

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196
              +A R+F  M+   + P    Y +LI+GL     G ++I  +A+     M   GM PN
Sbjct: 208 DFLKAFRLFDEMIEKKIFPTVVIYTILIRGLC----GESRI-SEAESMFRTMRNSGMLPN 262

Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             TY  + + + +   V +A  L  +M   G +P+
Sbjct: 263 LYTYNTMMDGYCKIAHVKKALELYXEMLGDGLLPN 297



 Score = 46.2 bits (108), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 76/174 (43%), Gaps = 25/174 (14%)

Query: 53  LPPPYDPFKKVVDEEPTDPRNLQEIF--HK-MRTEGLTNNAVKM---FDALSKDGLTHEA 106
           L P    +  ++D    D  N +E F  HK M+  GL  N   +    D L KDG   +A
Sbjct: 469 LLPDVVAYTALIDGHFKDG-NTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDA 527

Query: 107 LQLFA-------------QIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGV 153
           ++LF              ++      P+ V +TA+I+   + G+  +A + F  M  SG+
Sbjct: 528 IKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGL 587

Query: 154 APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAF 207
            P+ +T  V+I+G   A       L D      +++  G+ PN+  Y  + + +
Sbjct: 588 RPDVFTCIVIIQGHFRAMH-----LRDVMMLQADILKMGIIPNSSVYRVLAKGY 636


>gi|255660834|gb|ACU25586.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
          Length = 418

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 111/237 (46%), Gaps = 15/237 (6%)

Query: 2   AATAILRWLLHSPSPKRS-LRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPF 60
           +A+A+   +L +   +RS + + +  + A L+      + +  +  +  + K   P+D  
Sbjct: 47  SASAVFAAILETKGTQRSDIYVFSGLITAYLESGFLRDAIECYR--LTREHKFRVPFDTC 104

Query: 61  KKVVDEEPTDPRNLQEI--FHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIK 114
           +KV+ E     +  + +  F+K   E     ++  F+ L     K+G    +  +F  I+
Sbjct: 105 RKVL-EHLMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEIRLSQSVFDAIR 163

Query: 115 DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174
             G  P VV+   ++  Y   G   +  R+   M ASGV P+ YTY+VLI GL   +   
Sbjct: 164 KWGLRPSVVSFNTLMNGYIRQGDLDKGFRLKSAMHASGVQPDVYTYSVLINGLCKESK-- 221

Query: 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              + +A +   EM+ KG+ PN  T+T + +   +  KVD A  + +QM ++   PD
Sbjct: 222 ---MDEANELFXEMLDKGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQSLSPD 275



 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 87/203 (42%), Gaps = 39/203 (19%)

Query: 63  VVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM 119
           +  E   D  N  E+F +M  +GL  N V    + D   K+G    A++++ Q+  +   
Sbjct: 216 LCKESKMDEAN--ELFXEMLDKGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQSLS 273

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN----- 174
           PD++ +  +I      G  K+A  +   M   G+ P+  TY  LI G  +  DG+     
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQARNLINEMSMKGLKPDKITYTTLIDG--SCKDGDLETAF 331

Query: 175 -------------------AKILG--------DAQKYLMEMVGKGMRPNAGTYTAVFEAF 207
                              A I G        DA+K L EM+  G++P++GTYT +   F
Sbjct: 332 EYRKRMIEENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDSGTYTMIINEF 391

Query: 208 VRAQKVDEARGLLQQMKAKGFVP 230
            +   V     LL++M+  G VP
Sbjct: 392 CKKGDVWTGSKLLKEMQRDGHVP 414



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 6/158 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K+    EA +LF ++ DKG +P+ V  T +I+ +   G+   A+ ++ +ML+  
Sbjct: 212 LINGLCKESKMDEANELFXEMLDKGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQS 271

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           ++P+  TY  LI GL    D     L  A+  + EM  KG++P+  TYT + +   +   
Sbjct: 272 LSPDLITYNTLIYGLCKKGD-----LKQARNLINEMSMKGLKPDKITYTTLIDGSCKDGD 326

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGV 250
           ++ A    ++M  +    D+ A   ALI    Q  R V
Sbjct: 327 LETAFEYRKRMIEENIRLDDVAYT-ALISGLCQEGRSV 363


>gi|18394846|ref|NP_564110.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174883|sp|Q9LN22.1|PPR54_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g20300, mitochondrial; Flags: Precursor
 gi|9558596|gb|AAF88159.1|AC026234_10 Contains similarity to a hypothetical protein T3P18.15 gi|5454201
           from Arabidopsis thaliana BAC T3P18 gb|AC005698 and
           contains multiple PPR PF|01535 repeats [Arabidopsis
           thaliana]
 gi|17386104|gb|AAL38598.1|AF446865_1 At1g20300/F14O10_8 [Arabidopsis thaliana]
 gi|15450347|gb|AAK96467.1| At1g20300/F14O10_8 [Arabidopsis thaliana]
 gi|332191838|gb|AEE29959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 537

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 9/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
            F++M   G   + +    +   LS+     EA   F  +KD+   PDV+ +T ++  + 
Sbjct: 208 CFNRMEDYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSLKDRFE-PDVIVYTNLVRGWC 266

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG+  EA +VF  M  +G+ PN YTY+++I  L          +  A     +M+  G 
Sbjct: 267 RAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQ-----ISRAHDVFADMLDSGC 321

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            PNA T+  +    V+A + ++   +  QMK  G  PD
Sbjct: 322 APNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPD 359



 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 75/160 (46%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +++F +M+  G+  N      + DAL + G    A  +FA + D G  P+ +    ++  
Sbjct: 275 EKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRV 334

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +  AG+ ++ L+V+ +M   G  P+  TY  LI+  A   D N   L +A K L  M+ K
Sbjct: 335 HVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIE--AHCRDEN---LENAVKVLNTMIKK 389

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
               NA T+  +F    + + V+ A  +  +M      P+
Sbjct: 390 KCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCEPN 429



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 69/160 (43%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVKMFDALS---KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            ++F  M   G   NA+   + +    K G T + LQ++ Q+K  G  PD + +  +IEA
Sbjct: 310 HDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEA 369

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +      + A++V   M+      NA T+  + + +    D N      A +   +M+  
Sbjct: 370 HCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDVNG-----AHRMYSKMMEA 424

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              PN  TY  +   FV ++  D    + ++M  K   P+
Sbjct: 425 KCEPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEPN 464


>gi|399107198|gb|AFP20363.1| At1g03560-like protein, partial [Capsella grandiflora]
          Length = 212

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 75/146 (51%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+G  +E   +F  +  KG  P+V  +T +I+ YA +G  ++A+R+  RM+  G  P
Sbjct: 28  GLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKP 87

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY+V++ GL      N ++  +A  Y       G   N+  Y+++ +   +A ++DE
Sbjct: 88  DVVTYSVVVNGLCK----NGRV-EEALDYFQTCRFNGFAINSMFYSSLIDGLGKAGRIDE 142

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      ALID
Sbjct: 143 AERLFEEMSEKGCTRDSYCYN-ALID 167



 Score = 73.6 bits (179), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 71/134 (52%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ D+G  PDVV ++ V+      G+ +EAL  F     +G
Sbjct: 60  LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNG 119

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            A N+  Y+ LI GL     G A  + +A++   EM  KG   ++  Y A+ +A  +  K
Sbjct: 120 FAINSMFYSSLIDGL-----GKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGK 174

Query: 213 VDEARGLLQQMKAK 226
           VDEA  L ++M+ +
Sbjct: 175 VDEAMTLFKRMEEE 188



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 62/143 (43%), Gaps = 6/143 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
            + L+ ++ +KG        + VI      G+  E   VF  M+  G  PN   Y VLI 
Sbjct: 3   CVALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLID 62

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G A +       + DA + L  M+ +G +P+  TY+ V     +  +V+EA    Q  + 
Sbjct: 63  GYAKSGS-----VEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRF 117

Query: 226 KGFVPDEKAVKEALIDKRGQGFR 248
            GF  +      +LID  G+  R
Sbjct: 118 NGFAIN-SMFYSSLIDGLGKAGR 139


>gi|255660820|gb|ACU25579.1| pentatricopeptide repeat-containing protein [Mulguraea
           asparagoides]
          Length = 418

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 110/237 (46%), Gaps = 15/237 (6%)

Query: 2   AATAILRWLLHSPSPKRS-LRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPF 60
           +A+A+   +L +   +RS + + +  + A L+      + +  +  +  + K   P+D  
Sbjct: 47  SASAVFAAILETKGTQRSDIYVFSGLITAYLESGFLRDAIECYR--LTKEHKFRVPFDTC 104

Query: 61  KKVVDEEPTDPRNLQEI--FHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIK 114
           +KV+ E     +  + +  F++   E     ++  F+ L     K+G    A  +F  I 
Sbjct: 105 RKVI-EHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHNFCKEGEIRLAQSVFDSIT 163

Query: 115 DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174
             G  P VV+   ++  Y   G   E  R+   M ASGV P+ YT++VLI GL   +   
Sbjct: 164 KWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVQPDVYTHSVLINGLCKESK-- 221

Query: 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              + DA +   EM+  G+ PN  T+T + +   +  +VD A  + +QM ++  +PD
Sbjct: 222 ---MDDANELFDEMLBNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPD 275



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 82/202 (40%), Gaps = 35/202 (17%)

Query: 63  VVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM 119
           +  E   D  N  E+F +M   GL  N V    + D   K+G    A++++ Q+  +  +
Sbjct: 216 LCKESKMDDAN--ELFDEMLBNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLL 273

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD------- 172
           PD++ +  +I      G  K+   +   M   G+ P+  TY  LI G     D       
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQXXDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEY 333

Query: 173 ---------------GNAKILG--------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
                            A I G        DA+K L EM+  G++P  GTYT +   F +
Sbjct: 334 RKRMIKENIRLDDXAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCK 393

Query: 210 AQKVDEARGLLQQMKAKGFVPD 231
              V     LL++M+  G+ P+
Sbjct: 394 KGDVWTGSKLLKEMQRXGYXPN 415



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 75/158 (47%), Gaps = 6/158 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K+    +A +LF ++ B G +P+ V  T +I+ +   G+   A+ ++ +ML+  
Sbjct: 212 LINGLCKESKMDDANELFDEMLBNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYRQMLSQS 271

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+  TY  LI GL    D     L      + EM  KG++P+  TYT + +   +   
Sbjct: 272 LLPDLITYNTLIYGLCKKGD-----LKQXXDLIDEMSMKGLKPDKITYTTLIDGNCKEGD 326

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGV 250
           ++ A    ++M  +    D+ A   ALI    Q  R V
Sbjct: 327 LETAFEYRKRMIKENIRLDDXAYT-ALISGLCQEGRSV 363


>gi|147841407|emb|CAN66681.1| hypothetical protein VITISV_005087 [Vitis vinifera]
          Length = 882

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 30/169 (17%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +     + G+   A  +F  +  KG + D++ + A+I  Y  +   K+A  V  +ML  G
Sbjct: 547 LISTFCRLGMIRRATLVFKDMMGKGILADIITYNALIHGYCISSHLKKAFAVHSQMLTEG 606

Query: 153 VAPNAYTYAVLIKGLAAA----------------------------ADGNAKI--LGDAQ 182
           V+PN  TY +L+ GL+AA                              G+ KI  + +  
Sbjct: 607 VSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHGKIGNMKECV 666

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           K   EM+ KG  P   TY  +   F + +K+ +A+ L+Q+M+ +G  P+
Sbjct: 667 KLYCEMITKGFVPKTRTYNVLISCFAKGKKMSQAKELMQEMQVRGIPPN 715



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 80/174 (45%), Gaps = 20/174 (11%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +M TEG++ N      +   LS   L  EA  L  Q+K++G +P+   +  ++  + 
Sbjct: 598 VHSQMLTEGVSPNVETYNILLGGLSAARLIKEAAGLVNQMKERGLVPNATTYDILVSGHG 657

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G  KE ++++  M+  G  P   TY VLI   A       K +  A++ + EM  +G+
Sbjct: 658 KIGNMKECVKLYCEMITKGFVPKTRTYNVLISCFA-----KGKKMSQAKELMQEMQVRGI 712

Query: 194 RPNAGTYTAVFEAFVRAQKV------------DEARGLLQQMKAKGFVPDEKAV 235
            PN+ TY  +   + +  K              EA+ L ++M  KGF+P E  +
Sbjct: 713 PPNSSTYDILICGWYKLSKQPELNKSLKRSYQAEAKRLFEEMNEKGFIPCENTL 766



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 76/151 (50%), Gaps = 10/151 (6%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DA  K     +AL ++ ++  K  +PDVV +T ++     +G+ +EA  VF  M   G
Sbjct: 93  LIDAYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGKVEEAKSVFREMEEVG 152

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME--MVGKGMRPNAGTYTAVFEAFVRA 210
           V PN ++YA LI  L    +GN      A+ ++++  MV +G+  +   YTA+ +   +A
Sbjct: 153 VVPNRFSYATLIDSL--FKEGNV-----AEAFVLQGRMVVRGIGFDVVVYTALMDGLFKA 205

Query: 211 QKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
              + A  + Q +  +  VP+      ALID
Sbjct: 206 GMANNAEDMFQVLLEESLVPN-CVTYSALID 235



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 81/163 (49%), Gaps = 14/163 (8%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +F +M   G+  N      + D+L K+G   EA  L  ++  +G   DVV +TA+++ 
Sbjct: 142 KSVFREMEEVGVVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFDVVVYTALMDG 201

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQK---YLMEM 188
              AG    A  +F  +L   + PN  TY+ LI       DG+ K LGD  K    L EM
Sbjct: 202 LFKAGMANNAEDMFQVLLEESLVPNCVTYSALI-------DGHCK-LGDVNKGELLLQEM 253

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             K + PN   Y+++ + + +   ++EA  ++++M  +  +P+
Sbjct: 254 EEKHIFPNVIVYSSIVDGYTKKGLLNEAMDVMRKMVQRNILPN 296



 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 75/162 (46%), Gaps = 8/162 (4%)

Query: 73  NLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           N +++F  +  E L  N V    + D   K G  ++   L  ++++K   P+V+ +++++
Sbjct: 210 NAEDMFQVLLEESLVPNCVTYSALIDGHCKLGDVNKGELLLQEMEEKHIFPNVIVYSSIV 269

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
           + Y   G   EA+ V  +M+   + PN + Y  LI G   A        G A     EM 
Sbjct: 270 DGYTKKGLLNEAMDVMRKMVQRNILPNVFVYGTLIDGYFKADQR-----GIALDLFKEMK 324

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +G+  N     +      R+ +++EA  L + M ++G +PD
Sbjct: 325 SRGLEENNFVIDSFVNNLKRSGRMEEADELFKDMMSRGLLPD 366



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 66/139 (47%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   ++G    A++L   +K +G  PD+V +  ++  +   G    A ++   +    
Sbjct: 23  LIDGYCRNGEISRAVELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEISLVN 82

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN  TY  LI      A   ++ L DA     EM  K + P+  TYT +     ++ K
Sbjct: 83  LEPNVITYTTLID-----AYCKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGK 137

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V+EA+ + ++M+  G VP+
Sbjct: 138 VEEAKSVFREMEEVGVVPN 156



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 81/170 (47%), Gaps = 14/170 (8%)

Query: 76  EIFHKMRTEGLT---NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F  M + GL     N   M D   K G   +A  +  ++ +K    DVVA+  +I   
Sbjct: 353 ELFKDMMSRGLLPDRVNYTSMMDGFFKAGKESDAFNIAQEMTEKSSGFDVVAYNVLINGL 412

Query: 133 ASAGQGK-EALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              G+ + E+    MR L  G+AP++ T+  +I   A   +GN   LG+A K L EM   
Sbjct: 413 FKLGKYESESFHTGMRQL--GLAPDSATFNTMIN--AYCKEGN---LGNALKLLNEMKSY 465

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP---DEKAVKEA 238
           G++PN+ T   + +    A ++++   LL  M   GF P     KAV +A
Sbjct: 466 GLKPNSITCNILVQRLCAAGEIEKTMDLLNDMLVMGFHPTPTTHKAVLDA 515



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 77/169 (45%), Gaps = 9/169 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+   M+TEG   + V    + +   K G    A +L  +I      P+V+ +T +I+AY
Sbjct: 38  ELLEGMKTEGPAPDIVTYNTLMNGFCKIGDLFTAKKLMGEISLVNLEPNVITYTTLIDAY 97

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             +   ++AL ++  M    + P+  TY  ++ GL  +       + +A+    EM   G
Sbjct: 98  CKSQCLEDALYMYDEMTVKSLVPDVVTYTCIMNGLCKSGK-----VEEAKSVFREMEEVG 152

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           + PN  +Y  + ++  +   V EA  L  +M  +G   D   V  AL+D
Sbjct: 153 VVPNRFSYATLIDSLFKEGNVAEAFVLQGRMVVRGIGFD-VVVYTALMD 200



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 73/160 (45%), Gaps = 9/160 (5%)

Query: 76  EIFHK-MRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           E FH  MR  GL  ++     M +A  K+G    AL+L  ++K  G  P+ +    +++ 
Sbjct: 421 ESFHTGMRQLGLAPDSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNILVQR 480

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
             +AG+ ++ + +   ML  G  P   T+  ++   A++    A ++        ++VG 
Sbjct: 481 LCAAGEIEKTMDLLNDMLVMGFHPTPTTHKAVLD--ASSKSRRADVILHXHD---QLVGM 535

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G++ +  TY  +   F R   +  A  + + M  KG + D
Sbjct: 536 GVKLDLSTYNTLISTFCRLGMIRRATLVFKDMMGKGILAD 575



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 77/174 (44%), Gaps = 18/174 (10%)

Query: 77  IFHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           + ++M+  GL  NA   +D L     K G   E ++L+ ++  KG +P    +  +I  +
Sbjct: 633 LVNQMKERGLVPNATT-YDILVSGHGKIGNMKECVKLYCEMITKGFVPKTRTYNVLISCF 691

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKG---LAAAADGNAKI----LGDAQKYL 185
           A   +  +A  +   M   G+ PN+ TY +LI G   L+   + N  +      +A++  
Sbjct: 692 AKGKKMSQAKELMQEMQVRGIPPNSSTYDILICGWYKLSKQPELNKSLKRSYQAEAKRLF 751

Query: 186 MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
            EM  KG  P   T   +     +  K  +A+ +L ++  K      K V+E L
Sbjct: 752 EEMNEKGFIPCENTLACISFTLAKPGKKADAQRILNKLYKK------KTVQELL 799



 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 5/111 (4%)

Query: 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
           +E+      ++  G  PD      +I AY   G    AL++   M + G+ PN+ T  +L
Sbjct: 418 YESESFHTGMRQLGLAPDSATFNTMINAYCKEGNLGNALKLLNEMKSYGLKPNSITCNIL 477

Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
           ++ L AA +     +      L +M+  G  P   T+ AV +A  ++++ D
Sbjct: 478 VQRLCAAGE-----IEKTMDLLNDMLVMGFHPTPTTHKAVLDASSKSRRAD 523


>gi|414875533|tpg|DAA52664.1| TPA: hypothetical protein ZEAMMB73_493958 [Zea mays]
          Length = 688

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 75/156 (48%), Gaps = 10/156 (6%)

Query: 80  KMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           +M  EG+    V    M   L + GL   A   FA+++  G +PDV+ + +++  Y  AG
Sbjct: 300 EMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAG 359

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD-GNAKILGDAQKYLMEMVGKGMRP 195
             KEAL +F  +  +G+AP   TY + I G     D   A+IL +      EM  +G  P
Sbjct: 360 NLKEALLLFGDLRRAGLAPTVLTYNIRIDGYCRLGDLEEARILKE------EMGEQGCLP 413

Query: 196 NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           N  TYT + +  +    +  AR    +M +KG  PD
Sbjct: 414 NVCTYTILMKGSLNVCSLAMAREFFDEMLSKGLQPD 449



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/184 (28%), Positives = 84/184 (45%), Gaps = 13/184 (7%)

Query: 72  RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           ++ +E+  KM + GL  + +    +  A  + GL  EA ++F  +   G +P  V  T +
Sbjct: 502 KDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISDGLLPSAVTFTVI 561

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I AY   G    A   F +ML  GV PN  TY VLI  L     G  ++   A  +  EM
Sbjct: 562 IHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRM--GRTQL---ASHHFHEM 616

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFR 248
           + +G+  N  TYT + +   +    ++A     +M   G  PD    K AL+    +GF 
Sbjct: 617 LERGLVANKYTYTLLIDGNCKVGNWEDAMRFYFEMHQNGIHPDYLTHK-ALV----KGFD 671

Query: 249 GVIN 252
           G ++
Sbjct: 672 GHVH 675



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 81/169 (47%), Gaps = 9/169 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+   +  EG++++ V    +   L K G   +A +L  ++   G  PD + +T +I A+
Sbjct: 471 ELREVLMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAH 530

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G  +EA ++F  M++ G+ P+A T+ V+I   A    GN   L  A  +  +M+ +G
Sbjct: 531 CERGLLREARKIFNNMISDGLLPSAVTFTVIIH--AYCRRGN---LYSAYGWFRKMLEEG 585

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           + PN  TY  +  A  R  +   A     +M  +G V + K     LID
Sbjct: 586 VEPNEITYNVLIHALCRMGRTQLASHHFHEMLERGLVAN-KYTYTLLID 633



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 83/177 (46%), Gaps = 15/177 (8%)

Query: 58  DPFKKVVDEEPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEAL----QLFAQI 113
           D + ++ D E  + R L+E   +M  +G   N V  +  L K  L   +L    + F ++
Sbjct: 388 DGYCRLGDLE--EARILKE---EMGEQGCLPN-VCTYTILMKGSLNVCSLAMAREFFDEM 441

Query: 114 KDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADG 173
             KG  PD  A+   I A    G    AL +   ++  G++ +  TY +LI GL     G
Sbjct: 442 LSKGLQPDCFAYNTRICAELILGDIARALELREVLMLEGISSDTVTYNILIHGLCKT--G 499

Query: 174 NAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           N K   DA++  M+MV  G++P+  TYT +  A      + EAR +   M + G +P
Sbjct: 500 NLK---DAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISDGLLP 553



 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 76/161 (47%), Gaps = 8/161 (4%)

Query: 75  QEIFHKMRTEGLTNNAVKMFDALSKD---GLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E F +M ++GL  +       +  +   G    AL+L   +  +G   D V +  +I  
Sbjct: 435 REFFDEMLSKGLQPDCFAYNTRICAELILGDIARALELREVLMLEGISSDTVTYNILIHG 494

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G  K+A  + M+M+++G+ P+  TY  LI      A     +L +A+K    M+  
Sbjct: 495 LCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIH-----AHCERGLLREARKIFNNMISD 549

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           G+ P+A T+T +  A+ R   +  A G  ++M  +G  P+E
Sbjct: 550 GLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNE 590



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 69/157 (43%), Gaps = 8/157 (5%)

Query: 78  FHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F +MR  GL  + +    + +   K G   EAL LF  ++  G  P V+ +   I+ Y  
Sbjct: 333 FAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNIRIDGYCR 392

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            G  +EA  +   M   G  PN  TY +L+KG       N   L  A+++  EM+ KG++
Sbjct: 393 LGDLEEARILKEEMGEQGCLPNVCTYTILMKG-----SLNVCSLAMAREFFDEMLSKGLQ 447

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           P+   Y     A +    +  A  L + +  +G   D
Sbjct: 448 PDCFAYNTRICAELILGDIARALELREVLMLEGISSD 484



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 13/143 (9%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L   G   +   L  +++++G MP VV + A+I     +G  + A   F  M A G
Sbjct: 281 LITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMG 340

Query: 153 VAPNAYTYAVLIKGLAAAADGNAK----ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFV 208
           + P+  TY  L+ G   A  GN K    + GD ++        G+ P   TY    + + 
Sbjct: 341 LLPDVITYNSLLNGYCKA--GNLKEALLLFGDLRR-------AGLAPTVLTYNIRIDGYC 391

Query: 209 RAQKVDEARGLLQQMKAKGFVPD 231
           R   ++EAR L ++M  +G +P+
Sbjct: 392 RLGDLEEARILKEEMGEQGCLPN 414



 Score = 45.4 bits (106), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 51/127 (40%), Gaps = 7/127 (5%)

Query: 100 DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYT 159
           D  +   L  F ++   G  PDV     V+ A   A +  +   V   ML  G+ P+  T
Sbjct: 147 DTCSTLCLSAFREMASHGVAPDVKDCNHVLRALRDAARWDDICAVHEEMLQLGIEPSIVT 206

Query: 160 YAVLIKGLAAAA--DGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
           Y  L+         D  A +L +     ME  G G  PN  TY  V     R   ++EA 
Sbjct: 207 YNTLLDSFLKEGRKDKVAMLLKE-----METRGSGCLPNDVTYNVVITGLTRKGDLEEAA 261

Query: 218 GLLQQMK 224
            L++ M+
Sbjct: 262 ELVEGMR 268


>gi|341605693|gb|AEK82949.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 75/146 (51%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+G  +E   +F  +  KG  P+V  +T +I+ YA +G  ++A+R+  RM+  G  P
Sbjct: 26  GLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKP 85

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY+V++ GL      N ++  +A  Y       G   N+  Y+++ +   +A ++DE
Sbjct: 86  DVVTYSVVVNGLCK----NGRV-EEALDYFQTCRFNGXAINSXFYSSLIDGLGKAGRIDE 140

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      ALID
Sbjct: 141 AERLFEEMSEKGCTRDSYCYN-ALID 165



 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 71/134 (52%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ D+G  PDVV ++ V+      G+ +EAL  F     +G
Sbjct: 58  LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNG 117

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            A N+  Y+ LI GL     G A  + +A++   EM  KG   ++  Y A+ +A  +  K
Sbjct: 118 XAINSXFYSSLIDGL-----GKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGK 172

Query: 213 VDEARGLLQQMKAK 226
           VDEA  L ++M+ +
Sbjct: 173 VDEAMTLFKRMEEE 186



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 6/143 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
            + L+ ++ +KG        + VI      G+  E   VF  M+  G  PN   Y VLI 
Sbjct: 1   CVALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLID 60

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G A +       + DA + L  M+ +G +P+  TY+ V     +  +V+EA    Q  + 
Sbjct: 61  GYAKSGS-----VEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRF 115

Query: 226 KGFVPDEKAVKEALIDKRGQGFR 248
            G   +      +LID  G+  R
Sbjct: 116 NGXAIN-SXFYSSLIDGLGKAGR 137


>gi|341605791|gb|AEK82998.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 75/146 (51%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+G  +E   +F  +  KG  P+V  +T +I+ YA +G  ++A+R+  RM+  G  P
Sbjct: 26  GLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKP 85

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY+V++ GL      N ++  +A  Y       G   N+  Y+++ +   +A ++DE
Sbjct: 86  DVVTYSVVVNGLCK----NGRV-EEALDYFQTCRFNGXAINSXFYSSLIDGLGKAGRIDE 140

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      ALID
Sbjct: 141 AERLFEEMSEKGCTRDSYCXN-ALID 165



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 70/134 (52%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ D+G  PDVV ++ V+      G+ +EAL  F     +G
Sbjct: 58  LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNG 117

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            A N+  Y+ LI GL     G A  + +A++   EM  KG   ++    A+ +A  +  K
Sbjct: 118 XAINSXFYSSLIDGL-----GKAGRIDEAERLFEEMSEKGCTRDSYCXNALIDALTKHGK 172

Query: 213 VDEARGLLQQMKAK 226
           VDEA  L ++M+ +
Sbjct: 173 VDEAMTLFKRMEEE 186



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 6/143 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
            + L+ ++ +KG        + VI      G+  E   VF  M+  G  PN   Y VLI 
Sbjct: 1   CVALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLID 60

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G A +       + DA + L  M+ +G +P+  TY+ V     +  +V+EA    Q  + 
Sbjct: 61  GYAKSGS-----VEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRF 115

Query: 226 KGFVPDEKAVKEALIDKRGQGFR 248
            G   +      +LID  G+  R
Sbjct: 116 NGXAIN-SXFYSSLIDGLGKAGR 137


>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
 gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
          Length = 782

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 84/193 (43%), Gaps = 43/193 (22%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT------- 126
           +F KMR  GL  N V    + D L K G   +A+  F Q+ D+G  P+++ +T       
Sbjct: 398 VFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLC 457

Query: 127 ----------------------------AVIEAYASAGQGKEALRVFMRMLASGVAPNAY 158
                                       ++I+++   G+  E+ ++F  M+  GV P+  
Sbjct: 458 TCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDII 517

Query: 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218
           TY  LI G   A       + +A K L  MV  G++P+  TY  +   + R  ++D+A  
Sbjct: 518 TYNTLIDGCCLAGK-----MDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALA 572

Query: 219 LLQQMKAKGFVPD 231
           L ++M + G  P+
Sbjct: 573 LFKEMVSSGVSPN 585



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 83/184 (45%), Gaps = 10/184 (5%)

Query: 54  PPPYDPFKKVVDE--EPTDPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQ 108
           PP    +  V++   +  D       +H+M   G+  + V    +  AL K     +A++
Sbjct: 198 PPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAME 257

Query: 109 LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
           +   +   G MPD + + +++  Y S+GQ KEA+    +M + GV PN  TY+ L+  L 
Sbjct: 258 VLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYL- 316

Query: 169 AAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
              +G +    +A+K    M  +G+ P+  TY  + + +     + E   LL  M   G 
Sbjct: 317 -CKNGRST---EARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGI 372

Query: 229 VPDE 232
            PD 
Sbjct: 373 QPDH 376



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 11/147 (7%)

Query: 88  NNAVKMFDALSKDGLTHEALQLFAQIKDK---GHMPDVVAHTAVIEAYASAGQGKEALRV 144
           NN +K    L  +  + EAL+L   + D    G  PDVV++  V+  +   G   +A   
Sbjct: 167 NNLLK---GLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYST 223

Query: 145 FMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVF 204
           +  ML  G+ P+  TY+ +I  L       A+ +  A + L  MV  G+ P+  TY ++ 
Sbjct: 224 YHEMLDRGILPDVVTYSSIIAALC-----KAQAMDKAMEVLNTMVKNGVMPDCMTYNSIL 278

Query: 205 EAFVRAQKVDEARGLLQQMKAKGFVPD 231
             +  + +  EA G L++M++ G  P+
Sbjct: 279 HGYCSSGQPKEAIGTLKKMRSDGVEPN 305



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 71/156 (45%), Gaps = 8/156 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+  +M   G+  N +    + D+  K+G   E+ +LF  +   G  PD++ +  +I+ 
Sbjct: 466 EELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDG 525

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              AG+  EA ++   M++ GV P+  TY  LI G    +      + DA     EMV  
Sbjct: 526 CCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSR-----MDDALALFKEMVSS 580

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
           G+ PN  TY  + +     ++   A+ L   +   G
Sbjct: 581 GVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSG 616



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 77/164 (46%), Gaps = 8/164 (4%)

Query: 71  PRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P+       KMR++G+  N V    + + L K+G + EA ++F  +  +G  PD+  +  
Sbjct: 287 PKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRT 346

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           +++ YA+ G   E   +   M+ +G+ P+ + + +LI   A     +  +L        +
Sbjct: 347 LLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAML-----VFSK 401

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           M   G+ PN   Y  V +   ++  VD+A    +QM  +G  P+
Sbjct: 402 MRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPN 445



 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 64/127 (50%), Gaps = 5/127 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +A+ +F++++  G  P+VV +  VI+    +G   +A+  F +M+  G+ PN   Y  LI
Sbjct: 394 QAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLI 453

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            GL      +      A++ ++EM+ +G+  N   + ++ ++  +  +V E+  L   M 
Sbjct: 454 HGLCTCDKWDK-----AEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMV 508

Query: 225 AKGFVPD 231
             G  PD
Sbjct: 509 RIGVKPD 515



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 76/169 (44%), Gaps = 10/169 (5%)

Query: 60  FKKVVDEEPTDPRNLQ--EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIK 114
           F  ++D    + R ++  ++F  M   G+  + +    + D     G   EA +L A + 
Sbjct: 484 FNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMV 543

Query: 115 DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174
             G  PD+V +  +I  Y    +  +AL +F  M++SGV+PN  TY ++++GL      +
Sbjct: 544 SVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLF-----H 598

Query: 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
            +    A++  + +   G +    TY  +     +    DEA  + Q +
Sbjct: 599 TRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNL 647



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 70/144 (48%), Gaps = 11/144 (7%)

Query: 93  MFDALSKDGLTHEALQL-FAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
           +   L  D  T +A+ +   ++ + G +PDV ++  +++      + +EAL + + M+A 
Sbjct: 133 LLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALEL-LHMMAD 191

Query: 152 ----GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAF 207
               G  P+  +Y  ++ G     D +      A     EM+ +G+ P+  TY+++  A 
Sbjct: 192 DRGGGSPPDVVSYNTVLNGFFKEGDSDK-----AYSTYHEMLDRGILPDVVTYSSIIAAL 246

Query: 208 VRAQKVDEARGLLQQMKAKGFVPD 231
            +AQ +D+A  +L  M   G +PD
Sbjct: 247 CKAQAMDKAMEVLNTMVKNGVMPD 270



 Score = 38.9 bits (89), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 29/163 (17%), Positives = 63/163 (38%), Gaps = 8/163 (4%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M + G++ N +    +   L     T  A +L+  I   G   ++  +  ++    
Sbjct: 573 LFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLC 632

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
                 EALR+F  +  + +     T+ ++I  L          + +A+         G+
Sbjct: 633 KNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGR-----MDEAKDLFAAHSANGL 687

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK 236
            P+  TY+ + E  +    ++E   L   M+  G   D + + 
Sbjct: 688 VPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLN 730


>gi|225452992|ref|XP_002263038.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 644

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 79/164 (48%), Gaps = 10/164 (6%)

Query: 72  RNLQEIFHKMRTEGLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           +++  + ++M    +  NA+ +    DAL K+G+  +A  +   +   G  PDVV +TA+
Sbjct: 266 KHVNTLLNEMVDSKIMPNAISLTTVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTAL 325

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM-E 187
           I+ +    +  EA++VF  M+  G APN ++Y  LI G             D   YL  E
Sbjct: 326 IDGHCLRSEMDEAVKVFDMMVHKGCAPNVFSYNTLINGYCKIER------MDKAMYLFEE 379

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           M  + + PN  TY  +        ++ +A  L ++M A G +PD
Sbjct: 380 MCRQKLIPNTVTYNTLIHGLCHVGRLQDAIALFREMVACGQIPD 423



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 68/139 (48%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K+    +A+ L   I+     PD+  +T VI+    AG+ ++A  +F  + + G
Sbjct: 430 LLDYLCKNCHLDKAMALLKAIEGSNLDPDIQIYTIVIDGMCRAGELEDARDLFSNLSSKG 489

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN +TY ++  GL         +L +A K  MEM       +  TY  + + F+R  +
Sbjct: 490 LKPNVWTYNIMTHGLCKRG-----LLDEATKLFMEMDENACSADGCTYNTITQGFLRNNE 544

Query: 213 VDEARGLLQQMKAKGFVPD 231
              A  LL++M A+GF  D
Sbjct: 545 TSRAIQLLEEMLARGFSCD 563



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 74/177 (41%), Gaps = 11/177 (6%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
            +F KM  EG   + V    + + L K G T  A++L   ++     PDVV +  +I + 
Sbjct: 165 HLFDKMIWEGFQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSL 224

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               Q  +A  +F  M+  G++PN  T   L+  L    +            L EMV   
Sbjct: 225 CKDRQQTQAFNLFSEMITKGISPNIVTCNSLVYALCNLGEWK-----HVNTLLNEMVDSK 279

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRG 249
           + PNA + T V +A  +   V +A  ++  M   G  PD      ALID  G   R 
Sbjct: 280 IMPNAISLTTVVDALCKEGMVAQAHDVVDMMFQSGVEPD-VVTYTALID--GHCLRS 333



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 76/183 (41%), Gaps = 10/183 (5%)

Query: 54  PPPYDPFKKVVDEEPTDPR--NLQEIFHKMRTEGLTNNAVKM---FDALSKDGLTHEALQ 108
           PP    F K++       R   +  +  KM + G+ +N   +    ++       + A  
Sbjct: 71  PPSIVDFAKILTSITKVKRYSTVLSLSRKMDSFGIPHNVYTLNVLINSFCHLNRVNFAFS 130

Query: 109 LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
           + A+I   G  PD  + T +I+     GQ  EAL +F +M+  G  P+   YA LI GL 
Sbjct: 131 VLAKILKLGCQPDTASFTTLIKGLCLEGQIGEALHLFDKMIWEGFQPDVVIYATLINGLC 190

Query: 169 AAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
                +A I     + L  M     +P+   Y  +  +  + ++  +A  L  +M  KG 
Sbjct: 191 KTGHTSAAI-----RLLRSMEKGNCQPDVVVYGTLIHSLCKDRQQTQAFNLFSEMITKGI 245

Query: 229 VPD 231
            P+
Sbjct: 246 SPN 248


>gi|341605797|gb|AEK83001.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605799|gb|AEK83002.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605801|gb|AEK83003.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 75/146 (51%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+G  +E   +F  +  KG  P+V  +T +I+ YA +G  ++A+R+  RM+  G  P
Sbjct: 26  GLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKP 85

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY+V++ GL      N ++  +A  Y       G   N+  Y+++ +   +A ++DE
Sbjct: 86  DVVTYSVVVNGLCK----NGRV-EEALDYFQTCRFNGXAINSXFYSSLIDGLGKAGRIDE 140

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      ALID
Sbjct: 141 AERLFEEMSEKGCTRDSYCYN-ALID 165



 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 71/134 (52%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ D+G  PDVV ++ V+      G+ +EAL  F     +G
Sbjct: 58  LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNG 117

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            A N+  Y+ LI GL     G A  + +A++   EM  KG   ++  Y A+ +A  +  K
Sbjct: 118 XAINSXFYSSLIDGL-----GKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGK 172

Query: 213 VDEARGLLQQMKAK 226
           VDEA  L ++M+ +
Sbjct: 173 VDEAMTLFKRMEEE 186



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 6/143 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
            + L+ ++ +KG        + VI      G+  E   VF  M+  G  PN   Y VLI 
Sbjct: 1   CVALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLID 60

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G A +       + DA + L  M+ +G +P+  TY+ V     +  +V+EA    Q  + 
Sbjct: 61  GYAKSGS-----VEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRF 115

Query: 226 KGFVPDEKAVKEALIDKRGQGFR 248
            G   +      +LID  G+  R
Sbjct: 116 NGXAIN-SXFYSSLIDGLGKAGR 137


>gi|356510096|ref|XP_003523776.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g18475-like [Glycine max]
          Length = 640

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 68/131 (51%), Gaps = 6/131 (4%)

Query: 95  DALSKDGLTHEALQLFAQIKDKGHM-PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGV 153
           D L ++G   EA +LF ++  + H+ PD + +  +I  +   G+   A  V   M ++  
Sbjct: 371 DGLCRNGRVKEAFELFEEMVSRDHIVPDPLTYNVLINEFCRRGKPDRARNVIEFMKSNRC 430

Query: 154 APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV 213
            PN Y Y+ L+ GL          L DA+  L EM G G++P+  TYT++     R  ++
Sbjct: 431 YPNVYNYSALVDGLCKVGK-----LEDAKGVLAEMKGSGLKPDTVTYTSLINFLCRNGQI 485

Query: 214 DEARGLLQQMK 224
            EA GLL+++K
Sbjct: 486 GEAMGLLKEIK 496



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 76/174 (43%), Gaps = 5/174 (2%)

Query: 67  EPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           +P   RN+ E     R      N   + D L K G   +A  + A++K  G  PD V +T
Sbjct: 414 KPDRARNVIEFMKSNRCYPNVYNYSALVDGLCKVGKLEDAKGVLAEMKGSGLKPDTVTYT 473

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
           ++I      GQ  EA+ +   +  +    +  T+ V++ GL            +A   L 
Sbjct: 474 SLINFLCRNGQIGEAMGLLKEIKENTCQADTVTFNVILGGLCREDR-----FEEALDMLE 528

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
           ++  +G+  N G+Y  V  +  +  ++ +A+ LL  M ++GF P      E L+
Sbjct: 529 KLPQQGVYLNKGSYRIVLNSLTQKCELKKAKELLGLMLSRGFRPHYATSNELLV 582



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/154 (24%), Positives = 68/154 (44%), Gaps = 8/154 (5%)

Query: 80  KMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           +M+  GL  + V    + + L ++G   EA+ L  +IK+     D V    ++       
Sbjct: 459 EMKGSGLKPDTVTYTSLINFLCRNGQIGEAMGLLKEIKENTCQADTVTFNVILGGLCRED 518

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196
           + +EAL +  ++   GV  N  +Y +++  L    +     L  A++ L  M+ +G RP+
Sbjct: 519 RFEEALDMLEKLPQQGVYLNKGSYRIVLNSLTQKCE-----LKKAKELLGLMLSRGFRPH 573

Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
             T   +     +A  VD+A   L  +   GF P
Sbjct: 574 YATSNELLVCLCKAGMVDDAAVALFYLVEMGFQP 607


>gi|358348674|ref|XP_003638369.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355504304|gb|AES85507.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 501

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 66/135 (48%), Gaps = 5/135 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  S+ G        F ++K  G MPDVVA+T +I  Y  A + ++A  +F  ML+  
Sbjct: 358 LIDGFSRAGKLDACQYFFNEMKKNGCMPDVVAYTVMITGYVVARELEKAQEMFEEMLSKE 417

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN +TY  +I+GL  A         +A     EM  KG  PN+  Y  +      A +
Sbjct: 418 LVPNVFTYNSMIRGLCMAGK-----FDEACSMFKEMERKGCSPNSVVYITLVSCLRNAGR 472

Query: 213 VDEARGLLQQMKAKG 227
           V +AR +++QM   G
Sbjct: 473 VADAREVIKQMTETG 487



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 66/135 (48%), Gaps = 5/135 (3%)

Query: 97  LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
           L K+    +AL+L   +++ G  P V+  T +I+ ++ AG+       F  M  +G  P+
Sbjct: 327 LGKEKEQFKALKLLNYMRETGIEPTVLHFTTLIDGFSRAGKLDACQYFFNEMKKNGCMPD 386

Query: 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
              Y V+I G   A +     L  AQ+   EM+ K + PN  TY ++      A K DEA
Sbjct: 387 VVAYTVMITGYVVARE-----LEKAQEMFEEMLSKELVPNVFTYNSMIRGLCMAGKFDEA 441

Query: 217 RGLLQQMKAKGFVPD 231
             + ++M+ KG  P+
Sbjct: 442 CSMFKEMERKGCSPN 456


>gi|341605731|gb|AEK82968.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605733|gb|AEK82969.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605735|gb|AEK82970.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 75/146 (51%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+G  +E   +F  +  KG  P+V  +T +I+ YA +G  ++A+R+  RM+  G  P
Sbjct: 26  GLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKP 85

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY+V++ GL      N ++  +A  Y       G   N+  Y+++ +   +A ++DE
Sbjct: 86  DVVTYSVVVNGLCK----NGRV-EEALDYFQTCRXNGXAINSMFYSSLIDGLGKAGRIDE 140

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      ALID
Sbjct: 141 AERLFEEMSEKGCTRDSYCYN-ALID 165



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 71/134 (52%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ D+G  PDVV ++ V+      G+ +EAL  F     +G
Sbjct: 58  LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRXNG 117

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            A N+  Y+ LI GL     G A  + +A++   EM  KG   ++  Y A+ +A  +  K
Sbjct: 118 XAINSMFYSSLIDGL-----GKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGK 172

Query: 213 VDEARGLLQQMKAK 226
           VDEA  L ++M+ +
Sbjct: 173 VDEAMTLFKRMEEE 186



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 6/143 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
            + L+ ++ +KG        + VI      G+  E   VF  M+  G  PN   Y VLI 
Sbjct: 1   CVALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLID 60

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G A +       + DA + L  M+ +G +P+  TY+ V     +  +V+EA    Q  + 
Sbjct: 61  GYAKSGS-----VEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRX 115

Query: 226 KGFVPDEKAVKEALIDKRGQGFR 248
            G   +      +LID  G+  R
Sbjct: 116 NGXAIN-SMFYSSLIDGLGKAGR 137


>gi|255660866|gb|ACU25602.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
          Length = 484

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 12/168 (7%)

Query: 78  FHKMRTEGL-----TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           F+KM +EG+     T N   M       G    A + F  +K +   PDVV +  +I  Y
Sbjct: 138 FNKMLSEGIEPTRHTFNV--MIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGY 195

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               + +EA + F+ M    + P   TY  LIKG  +        + DA + + EM G G
Sbjct: 196 YRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQ-----VDDALRLVEEMKGFG 250

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
           ++PN  TY+ +      A+K+ EAR +L++M  K   P + ++   LI
Sbjct: 251 IKPNTITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLI 298



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 83/171 (48%), Gaps = 30/171 (17%)

Query: 91  VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           V M D+  K+G+  E++++F ++++ G    + ++ A+ +     G+   A R F +ML+
Sbjct: 84  VMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLS 143

Query: 151 SGVAPNAYTYAVLIKGLAAAA----------------------------DGNAKI--LGD 180
            G+ P  +T+ V+I G   +                             +G  ++  + +
Sbjct: 144 EGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEE 203

Query: 181 AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           A+KY +EM G+ + P   TYT + + +V   +VD+A  L+++MK  G  P+
Sbjct: 204 AEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPN 254



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 73/151 (48%), Gaps = 9/151 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
            F  M++  ++ + V    M +   +     EA + F ++K +   P VV +T +I+ Y 
Sbjct: 172 FFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYV 231

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
           S  Q  +ALR+   M   G+ PN  TY+ L+ GL      NA+ + +A+  L EM+ K +
Sbjct: 232 SVDQVDDALRLVEEMKGFGIKPNTITYSTLLPGLC-----NAEKMSEARVILKEMMDKYL 286

Query: 194 RP-NAGTYTAVFEAFVRAQKVDEARGLLQQM 223
            P +   +  +  +  ++   D A  +L+ M
Sbjct: 287 APTDNSIFMRLISSHCKSGNPDAAADVLKAM 317


>gi|115482834|ref|NP_001065010.1| Os10g0506000 [Oryza sativa Japonica Group]
 gi|31432949|gb|AAP54520.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|62733610|gb|AAX95727.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113639619|dbj|BAF26924.1| Os10g0506000 [Oryza sativa Japonica Group]
 gi|125575336|gb|EAZ16620.1| hypothetical protein OsJ_32092 [Oryza sativa Japonica Group]
          Length = 507

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 62/135 (45%), Gaps = 5/135 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D LS+ G        F ++  KG  PDVV +T +I  Y +AG+  EA + F  ML  G
Sbjct: 363 LIDGLSRAGNLEACKYFFDEMVKKGCQPDVVCYTVMITGYVAAGEFDEAQKFFDDMLLRG 422

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN YTY  +I GL    +        A   L +M  +G  PN   Y+ +      A K
Sbjct: 423 QLPNVYTYNSMICGLCIVGE-----FDKACSLLKDMESRGCTPNFTVYSTLVSRLRNAGK 477

Query: 213 VDEARGLLQQMKAKG 227
             EA  ++Q M  KG
Sbjct: 478 DSEANNIIQYMTNKG 492



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 5/126 (3%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           AL L   + D G +P V+  T +I+  + AG  +     F  M+  G  P+   Y V+I 
Sbjct: 341 ALNLLNYMSDVGCVPTVLHFTNLIDGLSRAGNLEACKYFFDEMVKKGCQPDVVCYTVMIT 400

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G  AA +       +AQK+  +M+ +G  PN  TY ++        + D+A  LL+ M++
Sbjct: 401 GYVAAGE-----FDEAQKFFDDMLLRGQLPNVYTYNSMICGLCIVGEFDKACSLLKDMES 455

Query: 226 KGFVPD 231
           +G  P+
Sbjct: 456 RGCTPN 461



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 74/172 (43%), Gaps = 34/172 (19%)

Query: 94  FDALSKDGLTHEALQLFAQIKDK----GHMPDVVAHTAVIEAYASAGQGKEALRVFMRML 149
           F+A+    LT E   L   +  K    GH PDV+ +  V+ A     +  +  ++   M 
Sbjct: 255 FNAILHTLLTIEQYSLIEWVHQKMIAEGHSPDVLTYNVVMRAKYMLRKLDQFHKLLDEMG 314

Query: 150 ASGVAPNAYTYAVLI-------KGLAA---------------------AADGNAKILG-D 180
            +G+AP+ YTY +L+       K LAA                       DG ++    +
Sbjct: 315 KNGLAPDLYTYNLLLHVLGKGDKPLAALNLLNYMSDVGCVPTVLHFTNLIDGLSRAGNLE 374

Query: 181 AQKYLM-EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           A KY   EMV KG +P+   YT +   +V A + DEA+     M  +G +P+
Sbjct: 375 ACKYFFDEMVKKGCQPDVVCYTVMITGYVAAGEFDEAQKFFDDMLLRGQLPN 426



 Score = 38.5 bits (88), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 53/130 (40%), Gaps = 5/130 (3%)

Query: 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
           GL    ++ F +  +  + P   +  A++    +  Q      V  +M+A G +P+  TY
Sbjct: 231 GLRRRLVERFIKSSNFNYRPFRNSFNAILHTLLTIEQYSLIEWVHQKMIAEGHSPDVLTY 290

Query: 161 AVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
            V+++     A    + L    K L EM   G+ P+  TY  +     +  K   A  LL
Sbjct: 291 NVVMR-----AKYMLRKLDQFHKLLDEMGKNGLAPDLYTYNLLLHVLGKGDKPLAALNLL 345

Query: 221 QQMKAKGFVP 230
             M   G VP
Sbjct: 346 NYMSDVGCVP 355


>gi|341605773|gb|AEK82989.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 75/146 (51%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+G  +E   +F  +  KG  P+V  +T +I+ YA +G  ++A+R+  RM+  G  P
Sbjct: 26  GLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKP 85

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY+V++ GL      N ++  +A  Y       G   N+  Y+++ +   +A ++DE
Sbjct: 86  DVVTYSVVVNGLCK----NGRV-EEALDYFQTCRFNGXAINSXFYSSLIDGLGKAGRIDE 140

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      ALID
Sbjct: 141 AERLFEEMSEKGCTRDSYCYN-ALID 165



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 71/134 (52%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ D+G  PDVV ++ V+      G+ +EAL  F     +G
Sbjct: 58  LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNG 117

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            A N+  Y+ LI GL     G A  + +A++   EM  KG   ++  Y A+ +A  +  K
Sbjct: 118 XAINSXFYSSLIDGL-----GKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALXKHGK 172

Query: 213 VDEARGLLQQMKAK 226
           VDEA  L ++M+ +
Sbjct: 173 VDEAMTLFKRMEEE 186



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 6/143 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
            + L+ ++ +KG        + VI      G+  E   VF  M+  G  PN   Y VLI 
Sbjct: 1   CVALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLID 60

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G A +       + DA + L  M+ +G +P+  TY+ V     +  +V+EA    Q  + 
Sbjct: 61  GYAKSGS-----VEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRF 115

Query: 226 KGFVPDEKAVKEALIDKRGQGFR 248
            G   +      +LID  G+  R
Sbjct: 116 NGXAIN-SXFYSSLIDGLGKAGR 137


>gi|341605747|gb|AEK82976.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605749|gb|AEK82977.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605751|gb|AEK82978.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 75/146 (51%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+G  +E   +F  +  KG  P+V  +T +I+ YA +G  ++A+R+  RM+  G  P
Sbjct: 26  GLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKP 85

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY+V++ GL      N ++  +A  Y       G   N+  Y+++ +   +A ++DE
Sbjct: 86  DVVTYSVVVNGLCK----NGRV-EEALDYFQTCRFNGFAINSMFYSSLIDGLGKAGRIDE 140

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      ALID
Sbjct: 141 AERLFEEMSEKGCTRDSYCYN-ALID 165



 Score = 73.6 bits (179), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 71/134 (52%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ D+G  PDVV ++ V+      G+ +EAL  F     +G
Sbjct: 58  LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNG 117

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            A N+  Y+ LI GL     G A  + +A++   EM  KG   ++  Y A+ +A  +  K
Sbjct: 118 FAINSMFYSSLIDGL-----GKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGK 172

Query: 213 VDEARGLLQQMKAK 226
           VDEA  L ++M+ +
Sbjct: 173 VDEAMTLFKRMEEE 186



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 62/143 (43%), Gaps = 6/143 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
            + L+ ++ +KG        + VI      G+  E   VF  M+  G  PN   Y VLI 
Sbjct: 1   CVALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLID 60

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G A +       + DA + L  M+ +G +P+  TY+ V     +  +V+EA    Q  + 
Sbjct: 61  GYAKSGS-----VEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRF 115

Query: 226 KGFVPDEKAVKEALIDKRGQGFR 248
            GF  +      +LID  G+  R
Sbjct: 116 NGFAIN-SMFYSSLIDGLGKAGR 137


>gi|341605737|gb|AEK82971.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605739|gb|AEK82972.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605741|gb|AEK82973.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 75/146 (51%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+G  +E   +F  +  KG  P+V  +T +I+ YA +G  ++A+R+  RM+  G  P
Sbjct: 26  GLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKP 85

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY+V++ GL      N ++  +A  Y       G   N+  Y+++ +   +A ++DE
Sbjct: 86  DVVTYSVVVNGLCK----NGRV-EEALDYFQTCRXNGXAINSMFYSSLIDGLGKAGRIDE 140

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      ALID
Sbjct: 141 AERLFEEMSEKGCTRDSYCYN-ALID 165



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 71/134 (52%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ D+G  PDVV ++ V+      G+ +EAL  F     +G
Sbjct: 58  LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRXNG 117

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            A N+  Y+ LI GL     G A  + +A++   EM  KG   ++  Y A+ +A  +  K
Sbjct: 118 XAINSMFYSSLIDGL-----GKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGK 172

Query: 213 VDEARGLLQQMKAK 226
           VDEA  L ++M+ +
Sbjct: 173 VDEAMXLFKRMEEE 186



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 6/143 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
            + L+ ++ +KG        + VI      G+  E   VF  M+  G  PN   Y VLI 
Sbjct: 1   CVALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLID 60

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G A +       + DA + L  M+ +G +P+  TY+ V     +  +V+EA    Q  + 
Sbjct: 61  GYAKSGS-----VEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRX 115

Query: 226 KGFVPDEKAVKEALIDKRGQGFR 248
            G   +      +LID  G+  R
Sbjct: 116 NGXAIN-SMFYSSLIDGLGKAGR 137


>gi|6633829|gb|AAF19688.1|AC009519_22 F1N19.15 [Arabidopsis thaliana]
          Length = 1048

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 73/159 (45%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+ ++M  +GL  + V    +   L   G   +A ++   +  +   PDVV  TA+I+ +
Sbjct: 197 ELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVF 256

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G   EA  ++  M+ S V PN  TY  +I GL          L DA+K    M  KG
Sbjct: 257 VKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGR-----LYDAKKTFDLMASKG 311

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             PN  TY  +   F + + VDE   L Q+M  +GF  D
Sbjct: 312 CFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNAD 350



 Score = 77.0 bits (188), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 8/165 (4%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D  N  E+F+ M  +G+  +AV    +   LS  G   +A +L   +  +   P+V+  T
Sbjct: 724 DLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFT 783

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
           A+I+ +   G   EA  ++  M+   V PN +TY  LI G           LGDA+    
Sbjct: 784 ALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHG-----CLGDAKYMFD 838

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            MV KG  P+  TY  +   F ++++V++   L  +M  +G V D
Sbjct: 839 LMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGD 883



 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/128 (32%), Positives = 63/128 (49%), Gaps = 5/128 (3%)

Query: 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
            EA+ L   +   G +P+VV +  VI           AL VF  M   G+  +A TY  L
Sbjct: 691 QEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTL 750

Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           I GL+     N+    DA + L +MV + + PN   +TA+ + FV+   + EAR L ++M
Sbjct: 751 ISGLS-----NSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEM 805

Query: 224 KAKGFVPD 231
             +  VP+
Sbjct: 806 IRRSVVPN 813



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 50/202 (24%), Positives = 82/202 (40%), Gaps = 41/202 (20%)

Query: 77   IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
            +F  M ++G   + V    +     K     + ++LF ++  +G + D   +  +I  Y 
Sbjct: 836  MFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYC 895

Query: 134  SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKI------LGDAQKYLME 187
             AG+   A +VF RM+  GV+P+  TY +L+  L      N KI      + D QK  M+
Sbjct: 896  QAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLC----NNGKIEKALVMVEDLQKSEMD 951

Query: 188  ----------------------------MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGL 219
                                        +  KG++P+A  Y  +     R     EA  L
Sbjct: 952  VDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKL 1011

Query: 220  LQQMKAKGFVPDEKAVKEALID 241
             ++MK  GF+P E+   E L D
Sbjct: 1012 CRRMKEDGFMPSERIYDETLRD 1033



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 62/127 (48%), Gaps = 5/127 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +A  L   +   G+ P+VV +  +I+     G+   AL +   M   G+  +  TY  L+
Sbjct: 159 DAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLL 218

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            GL  +   +     DA + L +M+ + + P+  T+TA+ + FV+   +DEA+ L ++M 
Sbjct: 219 TGLCYSGRWS-----DAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMI 273

Query: 225 AKGFVPD 231
                P+
Sbjct: 274 QSSVDPN 280



 Score = 56.6 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 60/124 (48%), Gaps = 5/124 (4%)

Query: 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
           G   +A  +F  +  KG  PDVV +  +I  +  + + ++ +++F  M   G+  +A+TY
Sbjct: 828 GCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTY 887

Query: 161 AVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
             LI G   A   N      AQK    MV  G+ P+  TY  + +      K+++A  ++
Sbjct: 888 NTLIHGYCQAGKLNV-----AQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMV 942

Query: 221 QQMK 224
           + ++
Sbjct: 943 EDLQ 946



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/200 (20%), Positives = 85/200 (42%), Gaps = 37/200 (18%)

Query: 60  FKKVVDEEPTDPRNL--QEIFHKMRTEGLTNNAVKMFDALSKDG---------------- 101
           +K+++ +   DP N+    I + +   G   +A K FD ++  G                
Sbjct: 269 YKEMI-QSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFC 327

Query: 102 ---LTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAY 158
              +  E ++LF ++  +G   D+  +  +I  Y   G+ + AL +F  M++  V P+  
Sbjct: 328 KFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDII 387

Query: 159 TYAVLIKGLAAAADGNAKI-----LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV 213
           T+ +L+ GL    +  + +     + +++KY+              Y  +     +A KV
Sbjct: 388 THCILLHGLCVNGEIESALVKFDDMRESEKYI----------GIVAYNIMIHGLCKADKV 437

Query: 214 DEARGLLQQMKAKGFVPDEK 233
           ++A  L  ++  +G  PD +
Sbjct: 438 EKAWELFCRLPVEGVKPDAR 457



 Score = 45.1 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 69/158 (43%), Gaps = 10/158 (6%)

Query: 76  EIFHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           ++F +M  EG  N  +  ++ L     + G    AL +F  +  +   PD++ H  ++  
Sbjct: 337 KLFQRMSCEGF-NADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHG 395

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G+ + AL  F  M  S        Y ++I GL  A       +  A +    +  +
Sbjct: 396 LCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADK-----VEKAWELFCRLPVE 450

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFV 229
           G++P+A TYT +     +     EA  L+++MK +G +
Sbjct: 451 GVKPDARTYTIMILGLCKNGPRREADELIRRMKEEGII 488



 Score = 44.7 bits (104), Expect = 0.040,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 58/129 (44%), Gaps = 6/129 (4%)

Query: 104 HEALQLFAQ-IKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAV 162
           +E +  F+Q ++  G   D+ + T +I  +    +   AL V  +M+  G  P+  T+  
Sbjct: 87  YETVIYFSQKMELYGISHDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGS 146

Query: 163 LIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
           L+ G           +GDA   ++ MV  G  PN   Y  + +   +  +++ A  LL +
Sbjct: 147 LLHGFCLVNR-----IGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNE 201

Query: 223 MKAKGFVPD 231
           M+ KG   D
Sbjct: 202 MEKKGLGAD 210



 Score = 44.7 bits (104), Expect = 0.043,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 3/95 (3%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           QE++ +M    +  N V    + + L   G  ++A + F  +  KG  P+VV +  +I  
Sbjct: 266 QELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISG 325

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKG 166
           +       E +++F RM   G   + +TY  LI G
Sbjct: 326 FCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHG 360



 Score = 42.7 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 56/127 (44%), Gaps = 5/127 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +A  LF ++     +P +V  T V+   A   +    + ++ +M   G++ + Y++ +LI
Sbjct: 587 DAFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILI 646

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
                 +  +  +    +     M+  G RP+  T  ++   F +  +  EA  L+  M 
Sbjct: 647 HCFCRCSRLSLALALLGK-----MMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMD 701

Query: 225 AKGFVPD 231
             GFVP+
Sbjct: 702 GFGFVPN 708



 Score = 38.1 bits (87), Expect = 4.0,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 61/137 (44%), Gaps = 6/137 (4%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +A  LF ++     +P +V  T ++ A A+  + +  +    +M   G++ + Y++ +LI
Sbjct: 54  DAFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTILI 113

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
                 +      L  A   L +M+  G  P+  T+ ++   F    ++ +A  L+  M 
Sbjct: 114 HCFCRCSR-----LSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMV 168

Query: 225 AKGFVPDEKAVKEALID 241
             G+ P+   V   LID
Sbjct: 169 KSGYEPN-VVVYNTLID 184


>gi|297746120|emb|CBI16176.3| unnamed protein product [Vitis vinifera]
          Length = 819

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 45/133 (33%), Positives = 64/133 (48%), Gaps = 5/133 (3%)

Query: 99  KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAY 158
           K G    A  LF ++   G  P+VV +T++I  Y   G+   A R++  M   G++PN Y
Sbjct: 437 KLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTY 496

Query: 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218
           T+  LI GL      +A  + +A K   EMV   + PN  TY  + E   +      A  
Sbjct: 497 TFTALISGLC-----HANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFE 551

Query: 219 LLQQMKAKGFVPD 231
           LL +M  KG VPD
Sbjct: 552 LLDEMVEKGLVPD 564



 Score = 73.6 bits (179), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 8/161 (4%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +F+ M  +GL  N V    + D+  K G    AL    ++ + G    V  ++++I  
Sbjct: 375 ESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISG 434

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +   G+ + A  +F  M+A+G+ PN   Y  LI G     +     L +A +   EM GK
Sbjct: 435 HCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGE-----LHNAFRLYHEMTGK 489

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           G+ PN  T+TA+      A ++ EA  L  +M     +P+E
Sbjct: 490 GISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNE 530



 Score = 66.6 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 46/173 (26%), Positives = 84/173 (48%), Gaps = 20/173 (11%)

Query: 73  NLQEIFHKMRTEGLTNNAVKMFDALSKDGLTH-----EALQLFAQIKDKGHMPDVVAHTA 127
           N   ++H+M  +G++ N    F AL   GL H     EA +LF ++ +   +P+ V +  
Sbjct: 478 NAFRLYHEMTGKGISPNTYT-FTALIS-GLCHANRMAEANKLFGEMVEWNVIPNEVTYNV 535

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           +IE +   G    A  +   M+  G+ P+ YTY  LI GL +        + +A++++ +
Sbjct: 536 LIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGR-----VSEAREFMND 590

Query: 188 MVGK--------GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           + G+        G  PN  TYTA+     +   +D+A  L ++M A   +P++
Sbjct: 591 LQGEQQKLNEIEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQ 643



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/142 (30%), Positives = 66/142 (46%), Gaps = 7/142 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           AL LF +I   G  PDV  +TAV+ +         A  V  RM +SG   +  TY V I+
Sbjct: 199 ALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCDLSVATYNVFIR 258

Query: 166 GLAAAADGNAKILGDAQ-KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           GL      N ++    + K L+    KG+R + GTY  +     + ++ +    ++ +M 
Sbjct: 259 GLCK----NQRVWEAVEIKNLLSY--KGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEMI 312

Query: 225 AKGFVPDEKAVKEALIDKRGQG 246
             GFVP E AV   +   R +G
Sbjct: 313 EFGFVPSEAAVSNLVDGLRKKG 334



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 8/129 (6%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
            H +  EG   N V    +     K G   EA ++   + D G  PD ++++ +I  Y  
Sbjct: 665 LHDVLLEGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCR 724

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            G  KEA++++  ML  GV P+   Y  LI G     +     L  A +   +M+ +G++
Sbjct: 725 RGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGE-----LTKAFELRDDMMRRGVK 779

Query: 195 PNAGTYTAV 203
           PN  TY ++
Sbjct: 780 PNRATYNSL 788



 Score = 56.6 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 42/169 (24%), Positives = 69/169 (40%), Gaps = 30/169 (17%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K G    A  L  ++K  G  P +  + A+I +    G+  EA  +F  M   G
Sbjct: 326 LVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKG 385

Query: 153 VAPNAYTYAVLIK---------------------GLAAAA-------DGNAKI--LGDAQ 182
           + PN  TY++LI                      G+ A          G+ K+  L  A+
Sbjct: 386 LFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAK 445

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
               EM+  G++PN   YT++   + +  ++  A  L  +M  KG  P+
Sbjct: 446 SLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPN 494



 Score = 49.3 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/167 (25%), Positives = 68/167 (40%), Gaps = 17/167 (10%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDK--------GHMPDVVA 124
           E+  +M  +GL  +      +   L   G   EA +    ++ +        G +P+VV 
Sbjct: 551 ELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEIEGCLPNVVT 610

Query: 125 HTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKY 184
           +TA+I      G   +A  +   MLAS   PN  TYA  +  L   ++GN +        
Sbjct: 611 YTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYL--TSEGNIEKAIQLHDV 668

Query: 185 LMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           L+E    G   N  TY  +   F +  ++ EA  +L  M   G  PD
Sbjct: 669 LLE----GFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPD 711



 Score = 48.9 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/127 (27%), Positives = 52/127 (40%), Gaps = 15/127 (11%)

Query: 99  KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA-------- 150
           K+G T  A +L  ++ +KG +PD   +  +I    S G+  EA R FM  L         
Sbjct: 542 KEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEA-REFMNDLQGEQQKLNE 600

Query: 151 -SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
             G  PN  TY  LI GL         ++  A+    EM+     PN  TY    +    
Sbjct: 601 IEGCLPNVVTYTALINGLCKIG-----LMDKAELLCREMLASNSLPNQNTYACFLDYLTS 655

Query: 210 AQKVDEA 216
              +++A
Sbjct: 656 EGNIEKA 662



 Score = 41.2 bits (95), Expect = 0.38,   Method: Composition-based stats.
 Identities = 40/177 (22%), Positives = 75/177 (42%), Gaps = 12/177 (6%)

Query: 75  QEIFHKMRTEG--LTNNAVKMF-DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+  +M + G  L+     +F   L K+    EA+++   +  KG   DV  +  ++  
Sbjct: 235 REVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLG 294

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
                + +    +   M+  G  P+    + L+ GL    +     +G A   + ++   
Sbjct: 295 LCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGN-----IGSAFDLVNKVKKF 349

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID---KRGQ 245
           G+ P+   Y A+  +  +  K+DEA  L   M  KG  P++      LID   KRG+
Sbjct: 350 GVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPND-VTYSILIDSFCKRGK 405



 Score = 39.3 bits (90), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 35/68 (51%)

Query: 99  KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAY 158
           + G   EA++L+  + ++G  PD VA+  +I      G+  +A  +   M+  GV PN  
Sbjct: 724 RRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRA 783

Query: 159 TYAVLIKG 166
           TY  LI G
Sbjct: 784 TYNSLIHG 791


>gi|222636287|gb|EEE66419.1| hypothetical protein OsJ_22769 [Oryza sativa Japonica Group]
          Length = 1393

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 77/161 (47%), Gaps = 12/161 (7%)

Query: 76  EIFHKMRTEGL-----TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           ++ ++M  EG      T N V   + L K G   +A  +      KG++PDV     +I+
Sbjct: 381 QVMNEMAEEGCHPDIQTYNIV--INGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLID 438

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
            Y    +   AL++  RM   G+AP+  TY  ++ GL  A   N     +  +   EM+ 
Sbjct: 439 GYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVN-----EVNETFQEMIL 493

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           KG  PN  TY  + E F R+ K++EA  ++ +M  +G  PD
Sbjct: 494 KGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPD 534



 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 69/141 (48%), Gaps = 5/141 (3%)

Query: 91  VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
             + + L  +G    AL+LF + + KG  PD+V + ++++     G    AL+V   M  
Sbjct: 329 CSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAE 388

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
            G  P+  TY ++I GL     GN   + DA   + + + KG  P+  T+  + + + + 
Sbjct: 389 EGCHPDIQTYNIVINGLCKM--GN---ISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKR 443

Query: 211 QKVDEARGLLQQMKAKGFVPD 231
            K+D A  L+++M   G  PD
Sbjct: 444 LKLDSALQLVERMWEYGIAPD 464



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 72/165 (43%), Gaps = 29/165 (17%)

Query: 97  LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
           L   G TH+A QLF Q+      P++ A   V+ A    G   EA  +  +++  G++ N
Sbjct: 161 LYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSIN 220

Query: 157 AYTYAVLIKGLAAA---------ADG------------NAKILG--------DAQKYLME 187
            +TY + I+GL  A          DG            N  I G        +A  YL  
Sbjct: 221 LFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRR 280

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           M+ +G  P+  TY  + + + +   V EA  LL+    KGFVPD+
Sbjct: 281 MMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQ 325



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 65/136 (47%), Gaps = 5/136 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   K      ALQL  ++ + G  PD + + +V+     AG+  E    F  M+  G
Sbjct: 436 LIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKG 495

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN  TY +LI+         +  + +A K +++M  +G+ P+A ++  +   F R   
Sbjct: 496 CHPNPITYNILIENFC-----RSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGD 550

Query: 213 VDEARGLLQQMKAKGF 228
           ++ A  L Q+++ KG+
Sbjct: 551 LEGAYLLFQKLEEKGY 566



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 8/155 (5%)

Query: 80  KMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           KM  EGL  +AV    +     ++G    A  LF ++++KG+         +I A++   
Sbjct: 525 KMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKL 584

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196
               A ++F  ML+ G   ++YTY VLI G    A+     +  A  +L+EM+ KG  P+
Sbjct: 585 NMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTAN-----VDRAYMHLVEMIKKGFIPS 639

Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             T+  V  +     +V +A G++  M   G VP+
Sbjct: 640 MSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPE 674



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 59/135 (43%), Gaps = 5/135 (3%)

Query: 97  LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
           L K  +  EA+    ++ ++G +PD   +  +I+ Y      +EA  +    +  G  P+
Sbjct: 265 LCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPD 324

Query: 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
             TY  LI GL A  D     +  A +   E   KG++P+   Y ++ +       +  A
Sbjct: 325 QVTYCSLINGLCAEGD-----VERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHA 379

Query: 217 RGLLQQMKAKGFVPD 231
             ++ +M  +G  PD
Sbjct: 380 LQVMNEMAEEGCHPD 394



 Score = 45.1 bits (105), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 71/164 (43%), Gaps = 13/164 (7%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
           A ++ G   +A+  F ++      P   A+ A+++A   A    +A +V++RMLA+GV+P
Sbjct: 59  AYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGVSP 118

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           + +T+ + ++     A  +      A + L  +  +G    A  Y  V           +
Sbjct: 119 DLHTHTIRLRSFCLTARPHI-----ALRLLRALPHRG----AVAYCTVVCGLYAHGHTHD 169

Query: 216 ARGLLQQMKAKGFVPDEKAVKEAL--IDKRGQGFRGVINILFGK 257
           AR L  QM      P+  A  + L  + KRG        +L GK
Sbjct: 170 ARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEA--GLLLGK 211



 Score = 41.2 bits (95), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 5/105 (4%)

Query: 125 HTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKY 184
           + A I AYA AG+ ++A+  F RM      P A  Y  ++  L  AA  +      A K 
Sbjct: 53  YVASIRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHD-----QAHKV 107

Query: 185 LMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFV 229
            + M+  G+ P+  T+T    +F    +   A  LL+ +  +G V
Sbjct: 108 YVRMLAAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGAV 152


>gi|225435038|ref|XP_002281336.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900 [Vitis vinifera]
          Length = 900

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 45/133 (33%), Positives = 64/133 (48%), Gaps = 5/133 (3%)

Query: 99  KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAY 158
           K G    A  LF ++   G  P+VV +T++I  Y   G+   A R++  M   G++PN Y
Sbjct: 437 KLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTY 496

Query: 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218
           T+  LI GL      +A  + +A K   EMV   + PN  TY  + E   +      A  
Sbjct: 497 TFTALISGLC-----HANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFE 551

Query: 219 LLQQMKAKGFVPD 231
           LL +M  KG VPD
Sbjct: 552 LLDEMVEKGLVPD 564



 Score = 73.6 bits (179), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 8/161 (4%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +F+ M  +GL  N V    + D+  K G    AL    ++ + G    V  ++++I  
Sbjct: 375 ESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISG 434

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +   G+ + A  +F  M+A+G+ PN   Y  LI G     +     L +A +   EM GK
Sbjct: 435 HCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGE-----LHNAFRLYHEMTGK 489

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           G+ PN  T+TA+      A ++ EA  L  +M     +P+E
Sbjct: 490 GISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNE 530



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/142 (30%), Positives = 66/142 (46%), Gaps = 7/142 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           AL LF +I   G  PDV  +TAV+ +         A  V  RM +SG   +  TY V I+
Sbjct: 199 ALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCDLSVATYNVFIR 258

Query: 166 GLAAAADGNAKILGDAQ-KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           GL      N ++    + K L+    KG+R + GTY  +     + ++ +    ++ +M 
Sbjct: 259 GLCK----NQRVWEAVEIKNLLSY--KGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEMI 312

Query: 225 AKGFVPDEKAVKEALIDKRGQG 246
             GFVP E AV   +   R +G
Sbjct: 313 EFGFVPSEAAVSNLVDGLRKKG 334



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 48/165 (29%), Positives = 75/165 (45%), Gaps = 9/165 (5%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D R++ ++  +M  +GL  + V    M DA +K G    A  L+  +  +G +P+VV +T
Sbjct: 650 DRRSIIDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYT 709

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
           A+I      G   +A  +   MLAS   PN  TYA  +  L   ++GN +        L+
Sbjct: 710 ALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYL--TSEGNIEKAIQLHDVLL 767

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           E    G   N  TY  +   F +  ++ EA  +L  M   G  PD
Sbjct: 768 E----GFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPD 808



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 8/129 (6%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
            H +  EG   N V    +     K G   EA ++   + D G  PD ++++ +I  Y  
Sbjct: 762 LHDVLLEGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCR 821

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            G  KEA++++  ML  GV P+   Y  LI G     +     L  A +   +M+ +G++
Sbjct: 822 RGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGE-----LTKAFELRDDMMRRGVK 876

Query: 195 PNAGTYTAV 203
           PN  TY ++
Sbjct: 877 PNRATYNSL 885



 Score = 56.6 bits (135), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 42/169 (24%), Positives = 69/169 (40%), Gaps = 30/169 (17%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K G    A  L  ++K  G  P +  + A+I +    G+  EA  +F  M   G
Sbjct: 326 LVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKG 385

Query: 153 VAPNAYTYAVLIK---------------------GLAAAA-------DGNAKI--LGDAQ 182
           + PN  TY++LI                      G+ A          G+ K+  L  A+
Sbjct: 386 LFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAK 445

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
               EM+  G++PN   YT++   + +  ++  A  L  +M  KG  P+
Sbjct: 446 SLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPN 494



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 40/159 (25%), Positives = 72/159 (45%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+  +M  +GL  +      +   L   G   EA +    ++ +    + +  +A++  Y
Sbjct: 551 ELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEMCFSALLHGY 610

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+  +AL     ML  GVA +   Y+VLI G+    D  + I       L +M  +G
Sbjct: 611 CKEGRLDDALDACREMLGRGVAMDLVCYSVLIYGILRQQDRRSII-----DLLKQMHDQG 665

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +RP+   YT + +A  +A  +  A GL   M ++G +P+
Sbjct: 666 LRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPN 704



 Score = 50.1 bits (118), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 43/159 (27%), Positives = 69/159 (43%), Gaps = 10/159 (6%)

Query: 99  KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP-NA 157
           K+G T  A +L  ++ +KG +PD   +  +I    S G+  EA R FM  L       N 
Sbjct: 542 KEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEA-REFMNDLQGEQQKLNE 600

Query: 158 YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
             ++ L+ G           L DA     EM+G+G+  +   Y+ +    +R Q      
Sbjct: 601 MCFSALLHGYCKEGR-----LDDALDACREMLGRGVAMDLVCYSVLIYGILRQQDRRSII 655

Query: 218 GLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFG 256
            LL+QM  +G  PD   +   +ID   +   G + + FG
Sbjct: 656 DLLKQMHDQGLRPD-NVLYTTMIDANAKA--GNLKMAFG 691



 Score = 41.2 bits (95), Expect = 0.38,   Method: Composition-based stats.
 Identities = 40/177 (22%), Positives = 75/177 (42%), Gaps = 12/177 (6%)

Query: 75  QEIFHKMRTEG--LTNNAVKMF-DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+  +M + G  L+     +F   L K+    EA+++   +  KG   DV  +  ++  
Sbjct: 235 REVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLG 294

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
                + +    +   M+  G  P+    + L+ GL    +     +G A   + ++   
Sbjct: 295 LCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRKKGN-----IGSAFDLVNKVKKF 349

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID---KRGQ 245
           G+ P+   Y A+  +  +  K+DEA  L   M  KG  P++      LID   KRG+
Sbjct: 350 GVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPND-VTYSILIDSFCKRGK 405



 Score = 39.3 bits (90), Expect = 1.5,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 35/68 (51%)

Query: 99  KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAY 158
           + G   EA++L+  + ++G  PD VA+  +I      G+  +A  +   M+  GV PN  
Sbjct: 821 RRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRA 880

Query: 159 TYAVLIKG 166
           TY  LI G
Sbjct: 881 TYNSLIHG 888


>gi|125526348|gb|EAY74462.1| hypothetical protein OsI_02350 [Oryza sativa Indica Group]
          Length = 596

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 87/174 (50%), Gaps = 13/174 (7%)

Query: 84  EGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALR 143
           +G+T N   +     + G   +AL LF  +  +   PD+V+HT V++A   AG+ ++A R
Sbjct: 244 DGVTYN--TLLSGYCRRGRLQDALHLFDVMPYRRVQPDLVSHTVVMDALCKAGRVRDARR 301

Query: 144 VFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAV 203
           +F RM+ SG++P+A  Y+VLI G       N   L +A+  LMEMVG G          V
Sbjct: 302 MFDRMIQSGLSPDAVAYSVLIAGYC-----NEGRLREARFLLMEMVGCGFSSEGFALKVV 356

Query: 204 FEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI-----DKRGQGFRGVIN 252
            E+ V+  K+     ++  ++  G V   ++    LI     D R    RG+++
Sbjct: 357 VESHVKFSKLLTCLNMVAPIRKHGVVIPSQSYS-CLIGALCEDMRPNAARGLLH 409



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 64/125 (51%), Gaps = 5/125 (4%)

Query: 112 QIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA 171
           +++++G  PD V +  ++  Y   G+ ++AL +F  M    V P+  ++ V++  L  A 
Sbjct: 235 ELEEQGFEPDGVTYNTLLSGYCRRGRLQDALHLFDVMPYRRVQPDLVSHTVVMDALCKA- 293

Query: 172 DGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            G  +   DA++    M+  G+ P+A  Y+ +   +    ++ EAR LL +M   GF  +
Sbjct: 294 -GRVR---DARRMFDRMIQSGLSPDAVAYSVLIAGYCNEGRLREARFLLMEMVGCGFSSE 349

Query: 232 EKAVK 236
             A+K
Sbjct: 350 GFALK 354



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 73/171 (42%), Gaps = 31/171 (18%)

Query: 86  LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVF 145
           L ++ V M DAL K G   +A ++F ++   G  PD VA++ +I  Y + G+ +EA  + 
Sbjct: 280 LVSHTVVM-DALCKAGRVRDARRMFDRMIQSGLSPDAVAYSVLIAGYCNEGRLREARFLL 338

Query: 146 MRMLASGVAPNAYTYAVLIK---------------------GLAAAADGNAKILGD---- 180
           M M+  G +   +   V+++                     G+   +   + ++G     
Sbjct: 339 MEMVGCGFSSEGFALKVVVESHVKFSKLLTCLNMVAPIRKHGVVIPSQSYSCLIGALCED 398

Query: 181 -----AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK 226
                A+  L  M+  G  P+   Y  + E F +   V+EA  +  +M ++
Sbjct: 399 MRPNAARGLLHWMIEDGHSPSLAIYNMIIECFCQCDIVEEALDVKVEMISR 449



 Score = 45.4 bits (106), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 60/142 (42%), Gaps = 16/142 (11%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +  AL +D   + A  L   + + GH P +  +  +IE +      +EAL V + M++  
Sbjct: 391 LIGALCEDMRPNAARGLLHWMIEDGHSPSLAIYNMIIECFCQCDIVEEALDVKVEMISRE 450

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILG---DAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
           V  +  TY  LI             LG   D +  + EM+  G +PN    +A+   F +
Sbjct: 451 VRLDFNTYRALITCFCR--------LGRSLDGELIMAEMIESGFQPNEAICSALVCGFCK 502

Query: 210 AQKVDEARGLLQQMKAKGFVPD 231
              ++ A  +L     + FV D
Sbjct: 503 EGALNRAELIL-----RAFVLD 519



 Score = 42.4 bits (98), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 27/44 (61%)

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           M   G+RPNA T+  +  A  R +  + A+G L++++ +GF PD
Sbjct: 201 MARAGVRPNAHTFNILVAALCRGEDAERAQGFLEELEEQGFEPD 244


>gi|218198940|gb|EEC81367.1| hypothetical protein OsI_24568 [Oryza sativa Indica Group]
          Length = 1380

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 77/161 (47%), Gaps = 12/161 (7%)

Query: 76  EIFHKMRTEGL-----TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           ++ ++M  EG      T N V   + L K G   +A  +      KG++PDV     +I+
Sbjct: 382 QVMNEMAEEGCHPDIQTYNIV--INGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLID 439

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
            Y    +   AL++  RM   G+AP+  TY  ++ GL  A   N     +  +   EM+ 
Sbjct: 440 GYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVN-----EVNETFQEMIL 494

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           KG  PN  TY  + E F R+ K++EA  ++ +M  +G  PD
Sbjct: 495 KGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPD 535



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 69/141 (48%), Gaps = 5/141 (3%)

Query: 91  VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
             + + L  +G    AL+LF + + KG  PD+V + ++++     G    AL+V   M  
Sbjct: 330 CSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAE 389

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
            G  P+  TY ++I GL     GN   + DA   + + + KG  P+  T+  + + + + 
Sbjct: 390 EGCHPDIQTYNIVINGLCKM--GN---ISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKR 444

Query: 211 QKVDEARGLLQQMKAKGFVPD 231
            K+D A  L+++M   G  PD
Sbjct: 445 LKLDSALQLVERMWEYGIAPD 465



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 72/165 (43%), Gaps = 29/165 (17%)

Query: 97  LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
           L   G TH+A QLF Q+      P++ A   V+ A    G   EA  +  +++  G++ N
Sbjct: 162 LYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSIN 221

Query: 157 AYTYAVLIKGLAAA---------ADG------------NAKILG--------DAQKYLME 187
            +TY + I+GL  A          DG            N  I G        +A  YL  
Sbjct: 222 LFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRR 281

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           M+ +G  P+  TY  + + + +   V EA  LL+    KGFVPD+
Sbjct: 282 MMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQ 326



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 65/136 (47%), Gaps = 5/136 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   K      ALQL  ++ + G  PD + + +V+     AG+  E    F  M+  G
Sbjct: 437 LIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKG 496

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN  TY +LI+         +  + +A K +++M  +G+ P+A ++  +   F R   
Sbjct: 497 CHPNPITYNILIENFC-----RSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGD 551

Query: 213 VDEARGLLQQMKAKGF 228
           ++ A  L Q+++ KG+
Sbjct: 552 LEGAYLLFQKLEEKGY 567



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 8/155 (5%)

Query: 80  KMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           KM  EGL  +AV    +     ++G    A  LF ++++KG+         +I A++   
Sbjct: 526 KMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKL 585

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196
               A ++F  ML+ G   ++YTY VLI G    A+     +  A  +L+EM+ KG  P+
Sbjct: 586 NMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTAN-----VDRAYMHLVEMIKKGFIPS 640

Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             T+  V  +     +V +A G++  M   G VP+
Sbjct: 641 MSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPE 675



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 59/135 (43%), Gaps = 5/135 (3%)

Query: 97  LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
           L K  +  EA+    ++ ++G +PD   +  +I+ Y      +EA  +    +  G  P+
Sbjct: 266 LCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPD 325

Query: 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
             TY  LI GL A  D     +  A +   E   KG++P+   Y ++ +       +  A
Sbjct: 326 QVTYCSLINGLCAEGD-----VERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHA 380

Query: 217 RGLLQQMKAKGFVPD 231
             ++ +M  +G  PD
Sbjct: 381 LQVMNEMAEEGCHPD 395



 Score = 45.1 bits (105), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 71/164 (43%), Gaps = 13/164 (7%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
           A ++ G   +A+  F ++      P   A+ A+++A   A    +A +V++RMLA+GV+P
Sbjct: 60  AYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGVSP 119

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           + +T+ + ++     A  +      A + L  +  +G    A  Y  V           +
Sbjct: 120 DLHTHTIRLRSFCLTARPHI-----ALRLLRALPHRG----AVAYCTVVCGLYAHGHTHD 170

Query: 216 ARGLLQQMKAKGFVPDEKAVKEAL--IDKRGQGFRGVINILFGK 257
           AR L  QM      P+  A  + L  + KRG        +L GK
Sbjct: 171 ARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEA--GLLLGK 212



 Score = 41.2 bits (95), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 5/105 (4%)

Query: 125 HTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKY 184
           + A I AYA AG+ ++A+  F RM      P A  Y  ++  L  AA  +      A K 
Sbjct: 54  YVASIRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHD-----QAHKV 108

Query: 185 LMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFV 229
            + M+  G+ P+  T+T    +F    +   A  LL+ +  +G V
Sbjct: 109 YVRMLAAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGAV 153


>gi|46390363|dbj|BAD15828.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|215697127|dbj|BAG91121.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 554

 Score = 77.8 bits (190), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 84/180 (46%), Gaps = 36/180 (20%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +  AL + G    A++L  Q+KDKG  P ++++  VI+    AG+ KEAL +   M++ G
Sbjct: 374 LLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKG 433

Query: 153 VAPNAYTYAVLIKGL--------AAAADG--------------NAKILGDAQK------- 183
           + P+  TY+ +  GL        A  A G              NA ILG  ++       
Sbjct: 434 LQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAI 493

Query: 184 -YLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDK 242
                M+G G  PN  TYT + E       + EAR LL ++ ++G       V+++LI+K
Sbjct: 494 DLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRGV------VRKSLINK 547



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 87/195 (44%), Gaps = 26/195 (13%)

Query: 58  DPFKKVVDEEPTDP--RNLQEIFHKMRTEGLTNNAVKMFDALSK-----DGLTH------ 104
           D  +++V E P +P       +   +   G T NA+ + D + +     D +T+      
Sbjct: 143 DAARRLVAEMPVEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEA 202

Query: 105 --------EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
                   +A++L  +++DKG  PD+V +  V+      G+  +A+     + + G  PN
Sbjct: 203 TCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPN 262

Query: 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
             +Y +++KGL  A         DA++ + EM  KG  PN  T+  +     R   V+ A
Sbjct: 263 TVSYNIVLKGLCTAERWE-----DAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPA 317

Query: 217 RGLLQQMKAKGFVPD 231
             +L+Q+   G  P+
Sbjct: 318 LEVLEQIPKYGCTPN 332



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/139 (34%), Positives = 68/139 (48%), Gaps = 13/139 (9%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   LS  G T EA ++ A        PDV+A+ A++  Y  AGQ   A R+   M    
Sbjct: 102 LIKKLSASGRTAEARRVLAACG-----PDVMAYNAMVAGYCGAGQLDAARRLVAEM---P 153

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V P+AYTY  LI+GL     G  +   +A   L EM+ +   P+  TYT + EA  +   
Sbjct: 154 VEPDAYTYNTLIRGLC----GRGRT-ANALAVLDEMLRRRCVPDVVTYTILLEATCKRSG 208

Query: 213 VDEARGLLQQMKAKGFVPD 231
             +A  LL +M+ KG  PD
Sbjct: 209 YKQAMKLLDEMRDKGCTPD 227



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 5/127 (3%)

Query: 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
            +A +L  ++  KG  P+VV    +I      G  + AL V  ++   G  PN+ +Y  L
Sbjct: 280 EDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPL 339

Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           +           K +  A  +L  MV +G  P+  +Y  +  A  R+ +VD A  LL Q+
Sbjct: 340 LHAFC-----KQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQL 394

Query: 224 KAKGFVP 230
           K KG  P
Sbjct: 395 KDKGCAP 401


>gi|302785473|ref|XP_002974508.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
 gi|300158106|gb|EFJ24730.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
          Length = 567

 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L +     +A +L  ++K+ G +PD   + A+I  Y+ A    +A +    M+ + 
Sbjct: 48  LLRGLCRSNQLEKARKLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNH 107

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P   TY  ++ GL  A         DA K L EM  KG  PN  TY  + E     +K
Sbjct: 108 CLPTVVTYTNIVDGLCKAERTR-----DAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERK 162

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +DEA+ +L++M  +G+ PD
Sbjct: 163 LDEAKKMLEEMAVRGYFPD 181



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 73/149 (48%), Gaps = 5/149 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K G    A ++   + ++G  PDVV ++++I+ +   G+ + A+ +   ML  G
Sbjct: 220 VINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLG 279

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN   Y  L+  L          +G A+  L+EM  +G  P+  +Y A  +   +A++
Sbjct: 280 CRPNMVAYNSLLGALHRLGH-----IGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAER 334

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALID 241
           V +A+ +  +M  +G  P+  +    ++D
Sbjct: 335 VKKAKAVFDRMVERGCTPNASSYSMLIVD 363



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 9/154 (5%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K   T +A++L  +++DKG  P++  +  ++E      +  EA ++   M   G
Sbjct: 118 IVDGLCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRG 177

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  TY   IKGL          + +A+K+L  M    + P+  +YT V     ++  
Sbjct: 178 YFPDVVTYNSFIKGLC-----KCDRVDEARKFLARM---PVTPDVVSYTTVINGLCKSGD 229

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
           +D A  +L  M  +G  PD      +LID   +G
Sbjct: 230 LDSASRMLDHMSNRGCTPD-VVTYSSLIDGFCKG 262



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 72/155 (46%), Gaps = 8/155 (5%)

Query: 92  KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
           K+   L+++    +A  +F ++ DK   PD      ++     + Q ++A ++  RM   
Sbjct: 12  KLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKARKLLGRMKEM 71

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           G  P+   Y  LI G + A D      G A K+L EMV     P   TYT + +   +A+
Sbjct: 72  GCVPDDAIYNALISGYSKAKD-----FGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAE 126

Query: 212 KVDEARGLLQQMKAKGFVPD---EKAVKEALIDKR 243
           +  +A  LL +M+ KG  P+      + E L ++R
Sbjct: 127 RTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEER 161



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 5/112 (4%)

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
           PDVV++T VI     +G    A R+   M   G  P+  TY+ LI G     +     + 
Sbjct: 212 PDVVSYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGE-----VE 266

Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            A   L  M+  G RPN   Y ++  A  R   + +A  +L +M+ +GF PD
Sbjct: 267 RAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPD 318



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 70/140 (50%), Gaps = 6/140 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +  AL + G   +A  +  +++ +G  PDVV++ A I+    A + K+A  VF RM+  G
Sbjct: 290 LLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERG 349

Query: 153 VAPNAYTYAVLIKGL---AAAADGNAK--ILGDAQKYLMEMVG-KGMRPNAGTYTAVFEA 206
             PNA +Y++LI  +       DG  K     +A     +++  K   P+   Y  + ++
Sbjct: 350 CTPNASSYSMLIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDS 409

Query: 207 FVRAQKVDEARGLLQQMKAK 226
             + +++D+A  + +QM  K
Sbjct: 410 HCKRRQIDKALQIHKQMLEK 429



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 81/208 (38%), Gaps = 55/208 (26%)

Query: 77  IFHKMRTEGLTNNAVK-------------MFDALSKDGLTHEALQLFAQIKD-KGHMPDV 122
           +F +M   G T NA               + D L K G   EA  LF+++ D K   PDV
Sbjct: 341 VFDRMVERGCTPNASSYSMLIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDV 400

Query: 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQ 182
             +  +++++    Q  +AL++  +ML      N  T+ +L+ GL          L DA+
Sbjct: 401 FFYNVMLDSHCKRRQIDKALQIHKQMLEKNCC-NVVTWNILVHGLCVDDR-----LSDAE 454

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQK------------------------------ 212
             L+ MV +G  P+  TY  + +A  +  K                              
Sbjct: 455 TMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGL 514

Query: 213 -----VDEARGLLQQMKAKGFVPDEKAV 235
                 +EA  L  ++  + +VPD+K +
Sbjct: 515 VHENMAEEAYLLFTKLVERRWVPDDKTL 542



 Score = 45.1 bits (105), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 6/89 (6%)

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           G   N +TY  L+  L      +      A     EM+ K  +P+A T+  +     R+ 
Sbjct: 2   GYEHNVFTYNKLLLQLTREHRHDK-----ASAVFQEMIDKSCQPDAFTFAILLRGLCRSN 56

Query: 212 KVDEARGLLQQMKAKGFVPDEKAVKEALI 240
           ++++AR LL +MK  G VPD+ A+  ALI
Sbjct: 57  QLEKARKLLGRMKEMGCVPDD-AIYNALI 84



 Score = 42.0 bits (97), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 6/108 (5%)

Query: 63  VVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM 119
            VD+  +D    + +   M  EG   + V    + DA+ K G +  AL+LF +    G +
Sbjct: 445 CVDDRLSDA---ETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCV 501

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
           PDVV ++A+I         +EA  +F +++     P+  T  +L + L
Sbjct: 502 PDVVTYSALITGLVHENMAEEAYLLFTKLVERRWVPDDKTLGLLHRKL 549


>gi|260780352|gb|ACX50722.1| AT1G03560-like protein [Capsella bursa-pastoris]
          Length = 199

 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 75/146 (51%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+G  +E   +F  +  KG  P+V  +T +I+ YA +G  ++A+R+  RM+  G  P
Sbjct: 26  GLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKP 85

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY+V++ GL      N ++  +A  Y       G   N+  Y+++ +   +A ++DE
Sbjct: 86  DVVTYSVVVNGLCK----NGRV-EEALDYFQTCRFNGFAINSMFYSSLIDGLGKAGRIDE 140

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      ALID
Sbjct: 141 AERLFEEMSEKGCTRDSYCYN-ALID 165



 Score = 73.6 bits (179), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 71/134 (52%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ D+G  PDVV ++ V+      G+ +EAL  F     +G
Sbjct: 58  LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNG 117

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            A N+  Y+ LI GL     G A  + +A++   EM  KG   ++  Y A+ +A  +  K
Sbjct: 118 FAINSMFYSSLIDGL-----GKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGK 172

Query: 213 VDEARGLLQQMKAK 226
           VDEA  L ++M+ +
Sbjct: 173 VDEAMTLFKRMEEE 186



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 62/143 (43%), Gaps = 6/143 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
            + L+ ++ +KG        + VI      G+  E   VF  M+  G  PN   Y VLI 
Sbjct: 1   CVALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLID 60

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G A +       + DA + L  M+ +G +P+  TY+ V     +  +V+EA    Q  + 
Sbjct: 61  GYAKSGS-----VEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRF 115

Query: 226 KGFVPDEKAVKEALIDKRGQGFR 248
            GF  +      +LID  G+  R
Sbjct: 116 NGFAIN-SMFYSSLIDGLGKAGR 137


>gi|147768816|emb|CAN62673.1| hypothetical protein VITISV_031897 [Vitis vinifera]
          Length = 653

 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 76/158 (48%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +FH+M   G   + V    + D L K+    +A+ L   I+     PD+  +T +++   
Sbjct: 407 LFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMC 466

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG+ ++A  +F  + + G+ PN +TY ++I GL         +L +A K   EM   G 
Sbjct: 467 RAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQG-----LLAEASKLFSEMNKNGC 521

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            PN  TY  +   F+R  +      LL++M A+GF  D
Sbjct: 522 SPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVD 559



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 79/181 (43%), Gaps = 11/181 (6%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
            +F KM  EG   N V    + + L K G T  A++L   ++     P+VV  + +I++ 
Sbjct: 161 HLFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSL 220

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               Q  EA  +F  M+  G++PN  TY  LI GL    +            + EMV   
Sbjct: 221 CKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWK-----HVTTLMNEMVDSK 275

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVIN 252
           + P+  T   V +A  +   V EA  ++  M  +G  P+      AL+D  G   R  ++
Sbjct: 276 IMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPN-VVTYNALMD--GHCLRNEVD 332

Query: 253 I 253
           +
Sbjct: 333 V 333



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 5/126 (3%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A    A+I   GH PD    T +I      G+  EAL +F +M+  G  PN  TY  LI 
Sbjct: 124 AFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLIN 183

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           GL    + +A I     + L  M     +PN   ++ + ++  + ++V EA  +  +M  
Sbjct: 184 GLCKVGNTSAAI-----RLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMIT 238

Query: 226 KGFVPD 231
           KG  P+
Sbjct: 239 KGISPN 244



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 86/214 (40%), Gaps = 19/214 (8%)

Query: 21  RITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKKVVDEEPTDPRNLQEIFHK 80
           ++ NT     L RS+   + QP     +T        D   K  D + T+  N   IF +
Sbjct: 187 KVGNTSAAIRLLRSMEQGNCQPNVVVFSTL------IDSLCK--DRQVTEAFN---IFSE 235

Query: 81  MRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ 137
           M T+G++ N V    +   L K         L  ++ D   MPDV     V++A    G 
Sbjct: 236 MITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGM 295

Query: 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA 197
             EA  V   M+  GV PN  TY  L+ G     + +      A K    MV K    N 
Sbjct: 296 VAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDV-----AVKVFDTMVHKDCVANV 350

Query: 198 GTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +Y  +   + + Q VD+A  L ++M  +   P+
Sbjct: 351 ISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPN 384



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 7/138 (5%)

Query: 95  DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           DAL K+G+  EA  +   +  +G  P+VV + A+++ +    +   A++VF  M+     
Sbjct: 288 DALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCV 347

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLM-EMVGKGMRPNAGTYTAVFEAFVRAQKV 213
            N  +Y  LI G             D   YL  EM  + + PN  TY  +        ++
Sbjct: 348 ANVISYNTLINGYCKIQS------VDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRL 401

Query: 214 DEARGLLQQMKAKGFVPD 231
            +A  L  +M A+G +PD
Sbjct: 402 QDAISLFHEMVARGQIPD 419



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 5/136 (3%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L  +G   EAL LF ++  +G  P+VV +  +I      G    A+R+   M      P
Sbjct: 149 GLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQP 208

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           N   ++ LI  L        + + +A     EM+ KG+ PN  TY ++     +  +   
Sbjct: 209 NVVVFSTLIDSLC-----KDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKH 263

Query: 216 ARGLLQQMKAKGFVPD 231
              L+ +M     +PD
Sbjct: 264 VTTLMNEMVDSKIMPD 279



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 69/159 (43%), Gaps = 8/159 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M  + LT N V    +   L   G   +A+ LF ++  +G +PD+V +  + +   
Sbjct: 372 LFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLC 431

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
                 +A+ +   +  S   P+   Y  ++ G+  A +     L DA+     +  KG+
Sbjct: 432 KNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGE-----LEDARDLFSNLSSKGL 486

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           +PN  TY  +     +   + EA  L  +M   G  P++
Sbjct: 487 QPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPND 525



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 5/126 (3%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A+++F  +  K  + +V+++  +I  Y       +A+ +F  M    + PN  TY  LI 
Sbjct: 334 AVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIH 393

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           GL          L DA     EMV +G  P+  TY  + +   + + +D+A  LL+ ++ 
Sbjct: 394 GLCHVGR-----LQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEG 448

Query: 226 KGFVPD 231
             + PD
Sbjct: 449 SNWDPD 454



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 62/150 (41%), Gaps = 6/150 (4%)

Query: 92  KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
           ++  +++K       L L  Q+   G  PDV     VI +     +   A     ++L  
Sbjct: 75  RLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVINSLCHLNRVDFAFSALAKILKL 134

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           G  P+A T+  LI+GL          +G+A     +M+G+G +PN  TY  +     +  
Sbjct: 135 GHQPDATTFTTLIRGLCVEGK-----IGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVG 189

Query: 212 KVDEARGLLQQMKAKGFVPDEKAVKEALID 241
               A  LL+ M+     P+   V   LID
Sbjct: 190 NTSAAIRLLRSMEQGNCQPN-VVVFSTLID 218


>gi|222631252|gb|EEE63384.1| hypothetical protein OsJ_18196 [Oryza sativa Japonica Group]
          Length = 378

 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 88/198 (44%), Gaps = 44/198 (22%)

Query: 72  RNLQEIFHKMRTEGLTNNAVKMFD----ALSKDGLTHEALQLFAQIKDK----------- 116
           +N   +F  MRT G  ++ V+ F+    AL+++GL  EA Q+F +++D+           
Sbjct: 18  KNAVGVFEMMRTHGF-DDGVESFNCLLVALAQEGLGREANQVFDRMRDRYAPDLRSYTAL 76

Query: 117 -----------------------GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGV 153
                                  G  PDVV H  +IE      +  EA+++F  M A G 
Sbjct: 77  MLAWCNARNLVEAGRVWNEMLENGLKPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGP 136

Query: 154 APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV 213
           APN +TY +LI+            +  A +   EM   G +P+  TYT +   +  A+++
Sbjct: 137 APNVWTYTMLIRDHCKRGK-----MDMAMRCFEEMQDVGCQPDVATYTCLLVGYGNAKRM 191

Query: 214 DEARGLLQQMKAKGFVPD 231
           D    LL++M  KG  PD
Sbjct: 192 DRVTALLEEMTQKGCPPD 209



 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 11/168 (6%)

Query: 69  TDPRNLQE---IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDV 122
            + RNL E   ++++M   GL  + V    M + L +     EA+++F  +K KG  P+V
Sbjct: 81  CNARNLVEAGRVWNEMLENGLKPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGPAPNV 140

Query: 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQ 182
             +T +I  +   G+   A+R F  M   G  P+  TY  L+ G      GNAK +    
Sbjct: 141 WTYTMLIRDHCKRGKMDMAMRCFEEMQDVGCQPDVATYTCLLVGY-----GNAKRMDRVT 195

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
             L EM  KG  P+  TY A+ +        D+A  + ++M  KG  P
Sbjct: 196 ALLEEMTQKGCPPDGRTYNALIKLLTNRNMPDDAARIYKKMIKKGLEP 243



 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 70/142 (49%), Gaps = 9/142 (6%)

Query: 90  AVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRML 149
           A+K F A    G    A+ +F  ++  G    V +   ++ A A  G G+EA +VF RM 
Sbjct: 7   AIKSFAAA---GEIKNAVGVFEMMRTHGFDDGVESFNCLLVALAQEGLGREANQVFDRM- 62

Query: 150 ASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
               AP+  +Y  L+      A  NA+ L +A +   EM+  G++P+   +  + E  +R
Sbjct: 63  RDRYAPDLRSYTALM-----LAWCNARNLVEAGRVWNEMLENGLKPDVVVHNTMIEGLLR 117

Query: 210 AQKVDEARGLLQQMKAKGFVPD 231
            Q+  EA  + + MKAKG  P+
Sbjct: 118 GQRRPEAVKMFELMKAKGPAPN 139



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 4/119 (3%)

Query: 109 LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
           L  ++  KG  PD   + A+I+   +     +A R++ +M+  G+ P  +TY +++K   
Sbjct: 197 LLEEMTQKGCPPDGRTYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYF 256

Query: 169 AAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
               G   ++G A     EM  KG+ P+  +YT      +R  + +EA   +++M  KG
Sbjct: 257 LG--GRNYMMGCA--VWEEMHRKGICPDVNSYTVFINGHIRHGRPEEACKYIEEMIQKG 311



 Score = 43.1 bits (100), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 66/145 (45%), Gaps = 8/145 (5%)

Query: 84  EGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQG-KEAL 142
           +G T NA  +   L+   +  +A +++ ++  KG  P +  +  ++++Y   G+      
Sbjct: 209 DGRTYNA--LIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYFLGGRNYMMGC 266

Query: 143 RVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTA 202
            V+  M   G+ P+  +Y V I G      G  +   +A KY+ EM+ KGM+     Y  
Sbjct: 267 AVWEEMHRKGICPDVNSYTVFING--HIRHGRPE---EACKYIEEMIQKGMKTPQIDYNK 321

Query: 203 VFEAFVRAQKVDEARGLLQQMKAKG 227
               F +A K D    L Q++K  G
Sbjct: 322 FAADFSKAGKPDILYELAQKVKFTG 346


>gi|18398498|ref|NP_565422.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75146596|sp|Q84J71.1|PP161_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g17670
 gi|28393395|gb|AAO42121.1| unknown protein [Arabidopsis thaliana]
 gi|28973597|gb|AAO64123.1| unknown protein [Arabidopsis thaliana]
 gi|330251570|gb|AEC06664.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 463

 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 72/140 (51%), Gaps = 5/140 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D +       EA+ L +++ + G  PD   +  +++ + +  +G EA+ V+ +M   G
Sbjct: 236 LIDNVCNSKNLREAMYLVSKLGNAGFKPDCFLYNTIMKGFCTLSKGSEAVGVYKKMKEEG 295

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V P+  TY  LI GL+ A       + +A+ YL  MV  G  P+  TYT++     R  +
Sbjct: 296 VEPDQITYNTLIFGLSKAGR-----VEEARMYLKTMVDAGYEPDTATYTSLMNGMCRKGE 350

Query: 213 VDEARGLLQQMKAKGFVPDE 232
              A  LL++M+A+G  P++
Sbjct: 351 SLGALSLLEEMEARGCAPND 370



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 8/142 (5%)

Query: 86  LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVF 145
           L N  +K F  LSK     EA+ ++ ++K++G  PD + +  +I   + AG+ +EA    
Sbjct: 267 LYNTIMKGFCTLSKGS---EAVGVYKKMKEEGVEPDQITYNTLIFGLSKAGRVEEARMYL 323

Query: 146 MRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFE 205
             M+ +G  P+  TY  L+ G+    +     LG A   L EM  +G  PN  TY  +  
Sbjct: 324 KTMVDAGYEPDTATYTSLMNGMCRKGES----LG-ALSLLEEMEARGCAPNDCTYNTLLH 378

Query: 206 AFVRAQKVDEARGLLQQMKAKG 227
              +A+ +D+   L + MK+ G
Sbjct: 379 GLCKARLMDKGMELYEMMKSSG 400



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 10/144 (6%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           ++ KM+ EG+  + +    +   LSK G   EA      + D G+ PD   +T+++    
Sbjct: 287 VYKKMKEEGVEPDQITYNTLIFGLSKAGRVEEARMYLKTMVDAGYEPDTATYTSLMNGMC 346

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV-GKG 192
             G+   AL +   M A G APN  TY  L+ GL  A       L D    L EM+   G
Sbjct: 347 RKGESLGALSLLEEMEARGCAPNDCTYNTLLHGLCKAR------LMDKGMELYEMMKSSG 400

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEA 216
           ++  +  Y  +  + V++ KV EA
Sbjct: 401 VKLESNGYATLVRSLVKSGKVAEA 424



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 60/130 (46%), Gaps = 6/130 (4%)

Query: 105 EALQLFAQIKDKGHMP-DVVAHTAVIEAYASAGQGKEALRVFMRMLAS--GVAPNAYTYA 161
           +A  LF  I     +P D+  H +V+++Y S     + +++F  +L S     P   T+ 
Sbjct: 67  DAKSLFNSIAATSRIPLDLKFHNSVLQSYGSIAVVNDTVKLFQHILKSQPNFRPGRSTFL 126

Query: 162 VLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221
           +L+     A D +   + +  + L  MV  G+ P+  T      +     +VDEA+ L++
Sbjct: 127 ILLSHACRAPDSS---ISNVHRVLNLMVNNGLEPDQVTTDIAVRSLCETGRVDEAKDLMK 183

Query: 222 QMKAKGFVPD 231
           ++  K   PD
Sbjct: 184 ELTEKHSPPD 193



 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 35/164 (21%), Positives = 67/164 (40%), Gaps = 9/164 (5%)

Query: 73  NLQEIFHKMRTEGLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           N+  + + M   GL  + V       +L + G   EA  L  ++ +K   PD   +  ++
Sbjct: 142 NVHRVLNLMVNNGLEPDQVTTDIAVRSLCETGRVDEAKDLMKELTEKHSPPDTYTYNFLL 201

Query: 130 EAYASAGQGKEALRVFMRMLAS-GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           +                 M     V P+  ++ +LI  +      N+K L +A   + ++
Sbjct: 202 KHLCKCKDLHVVYEFVDEMRDDFDVKPDLVSFTILIDNVC-----NSKNLREAMYLVSKL 256

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
              G +P+   Y  + + F    K  EA G+ ++MK +G  PD+
Sbjct: 257 GNAGFKPDCFLYNTIMKGFCTLSKGSEAVGVYKKMKEEGVEPDQ 300


>gi|357144169|ref|XP_003573197.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g43820-like [Brachypodium distachyon]
          Length = 531

 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 63/124 (50%), Gaps = 5/124 (4%)

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
             +A + + G  PD V+H  +IEA   AGQ +E L+VF +M+  G  P    Y  LI   
Sbjct: 261 HFWAMMLEDGLAPDEVSHCHLIEALGRAGQPEEGLKVFEKMVHEGYGPTTTAYNALIFNF 320

Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
            ++ D     L    KY  +MV K   PN+ TY  +  A +RA++V +A  +   M  +G
Sbjct: 321 ISSGD-----LDRCIKYYKDMVDKNCPPNSATYCKMIRALLRARRVADALQMFGDMFTRG 375

Query: 228 FVPD 231
            +P+
Sbjct: 376 VLPN 379



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 65/138 (47%), Gaps = 8/138 (5%)

Query: 74  LQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           L+  +  M  +GL  + V    + +AL + G   E L++F ++  +G+ P   A+ A+I 
Sbjct: 259 LEHFWAMMLEDGLAPDEVSHCHLIEALGRAGQPEEGLKVFEKMVHEGYGPTTTAYNALIF 318

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
            + S+G     ++ +  M+     PN+ TY  +I+ L       A+ + DA +   +M  
Sbjct: 319 NFISSGDLDRCIKYYKDMVDKNCPPNSATYCKMIRALL-----RARRVADALQMFGDMFT 373

Query: 191 KGMRPNAGTYTAVFEAFV 208
           +G+ PN G  T   E   
Sbjct: 374 RGVLPNTGDITLFIEPLC 391


>gi|357139998|ref|XP_003571561.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 807

 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 86/174 (49%), Gaps = 13/174 (7%)

Query: 77  IFHKMRTEGLTNNAVKM--FDA-LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M + G+  N V    F A L K G   EA + F  +  KGH  ++++++ ++  YA
Sbjct: 303 MFKEMTSRGVIPNTVTCSTFVAFLCKHGRIEEAREFFDSMLAKGHKLNIISYSTLLHGYA 362

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
           +AG   +   +F  M+  G+ PN + + +L+ G A        ++ +A     +M  +G+
Sbjct: 363 TAGCLVDMSNLFNLMVRDGIVPNQHVFNILVNGYAKCG-----MVREAMFIFEDMQKRGL 417

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGF 247
            P+  TY AV  AF R   +D+A      M  KG  P+  AV + LI    QGF
Sbjct: 418 NPDVLTYLAVIHAFCRMGSMDDAMDKFNHMIDKGVEPN-FAVYQCLI----QGF 466



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 76/160 (47%), Gaps = 8/160 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++FH+M  +G+  N V    +  AL K     +A  +  Q+   G  PD V +  +I  Y
Sbjct: 232 DLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGILRQMVGNGVQPDNVTYNTLIHGY 291

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           ++ GQ K+A+R+F  M + GV PN  T +  +  L          + +A+++   M+ KG
Sbjct: 292 STLGQWKQAVRMFKEMTSRGVIPNTVTCSTFVAFLCKHGR-----IEEAREFFDSMLAKG 346

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
            + N  +Y+ +   +  A  + +   L   M   G VP++
Sbjct: 347 HKLNIISYSTLLHGYATAGCLVDMSNLFNLMVRDGIVPNQ 386



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 85/185 (45%), Gaps = 15/185 (8%)

Query: 73  NLQEIFHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           ++  +F+ M  +G+  N   +F+ L    +K G+  EA+ +F  ++ +G  PDV+ + AV
Sbjct: 369 DMSNLFNLMVRDGIVPNQ-HVFNILVNGYAKCGMVREAMFIFEDMQKRGLNPDVLTYLAV 427

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I A+   G   +A+  F  M+  GV PN   Y  LI+G     D     L  A++ + E+
Sbjct: 428 IHAFCRMGSMDDAMDKFNHMIDKGVEPNFAVYQCLIQGFCTHGD-----LVKAEELVYEI 482

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKE-----ALIDKR 243
             KG+ P   ++ ++     +  +V EA+ +   +   G   D            LI K 
Sbjct: 483 RNKGLGPCILSFASLINHLCKEGRVFEAQRIFDMIIRTGEKADVNIFTSLIDGYCLIGKM 542

Query: 244 GQGFR 248
            + FR
Sbjct: 543 SEAFR 547



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 71/133 (53%), Gaps = 10/133 (7%)

Query: 103 THEALQ-LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRML---ASGVAPNAY 158
           T EA+  LF ++ + G +PD ++++ V+++    G+ + AL + +RM      G   N  
Sbjct: 154 TDEAVDVLFHRMPELGCVPDAISYSTVLKSVCDDGRSQWALDI-LRMAVKQGGGCPCNVV 212

Query: 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218
            Y+ ++ GL          +G+A     EM  +G+ PN  TY +V  A  +A+ VD+A+G
Sbjct: 213 VYSTVVHGLFKEGK-----VGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQG 267

Query: 219 LLQQMKAKGFVPD 231
           +L+QM   G  PD
Sbjct: 268 ILRQMVGNGVQPD 280



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 5/132 (3%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+G   EA  LF ++  +G  P+VV + +VI A   A    +A  +  +M+ +GV P
Sbjct: 220 GLFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGILRQMVGNGVQP 279

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY  LI G +    G  K    A +   EM  +G+ PN  T +       +  +++E
Sbjct: 280 DNVTYNTLIHGYSTL--GQWK---QAVRMFKEMTSRGVIPNTVTCSTFVAFLCKHGRIEE 334

Query: 216 ARGLLQQMKAKG 227
           AR     M AKG
Sbjct: 335 AREFFDSMLAKG 346



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 75/189 (39%), Gaps = 43/189 (22%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+ +++R +GL    +    + + L K+G   EA ++F  I   G   DV   T++I+ 
Sbjct: 476 EELVYEIRNKGLGPCILSFASLINHLCKEGRVFEAQRIFDMIIRTGEKADVNIFTSLIDG 535

Query: 132 YASAGQGKEALRV-----------------------------------FMRMLASGVAPN 156
           Y   G+  EA RV                                   F  +L  GV P 
Sbjct: 536 YCLIGKMSEAFRVHDAMVSVGIEPDIVTYGTLVNGCCKNGRIDDGLILFRELLHKGVKPT 595

Query: 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
            +TY +++ GL  A    A     A++   EM+  G+     TY+ +     R    +EA
Sbjct: 596 TFTYGIILDGLFHAGRTAA-----AKEMFQEMIESGIAVTIPTYSILLTGLCRNNCTEEA 650

Query: 217 RGLLQQMKA 225
             + Q++ A
Sbjct: 651 ITVFQKLCA 659



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/168 (23%), Positives = 66/168 (39%), Gaps = 30/168 (17%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +   K+G   + L LF ++  KG  P    +  +++    AG+   A  +F  M+ SG
Sbjct: 567 LVNGCCKNGRIDDGLILFRELLHKGVKPTTFTYGIILDGLFHAGRTAAAKEMFQEMIESG 626

Query: 153 VAPNAYTYAVLIKGLA------AAADGNAKILGDAQKY----LMEMVGK----------- 191
           +A    TY++L+ GL        A     K+     K+    L  M+ K           
Sbjct: 627 IAVTIPTYSILLTGLCRNNCTEEAITVFQKLCAMNVKFDIVILNIMISKMFKARRREEAE 686

Query: 192 ---------GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
                    G+ P   TYT + E  ++   V+EA G+   M   G  P
Sbjct: 687 GLFASIPDYGLVPTVQTYTIMMENLIKEGSVEEAEGVFSVMLKSGLSP 734


>gi|356561955|ref|XP_003549241.1| PREDICTED: pentatricopeptide repeat-containing protein At5g11310,
           mitochondrial-like [Glycine max]
          Length = 622

 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 41/129 (31%), Positives = 64/129 (49%), Gaps = 5/129 (3%)

Query: 103 THEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAV 162
             +AL++   +  +G  P+ + +  +I+A A AG+ KEAL +  R     + P   TY  
Sbjct: 327 VEKALEMVGDMTKEGIAPNAIVYNPIIDALAEAGRFKEALGMLERFHVLEIGPTDSTYNS 386

Query: 163 LIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
           L+KG   A D     L  A K L  M+ +G  P+A TY   F  F R +K++E   L  +
Sbjct: 387 LVKGFCKAGD-----LVGASKILKMMISRGFLPSATTYNYFFRYFSRCRKIEEGMNLYTK 441

Query: 223 MKAKGFVPD 231
           +   G+ PD
Sbjct: 442 LIQSGYTPD 450



 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 38/174 (21%), Positives = 73/174 (41%), Gaps = 11/174 (6%)

Query: 76  EIFHKMR---TEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E FH +    T+   N+ VK F    K G    A ++   +  +G +P    +      +
Sbjct: 370 ERFHVLEIGPTDSTYNSLVKGF---CKAGDLVGASKILKMMISRGFLPSATTYNYFFRYF 426

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           +   + +E + ++ +++ SG  P+  TY +L+K L        + L  A +   EM   G
Sbjct: 427 SRCRKIEEGMNLYTKLIQSGYTPDRLTYHLLVKMLC-----EEEKLDLAVQVSKEMRHNG 481

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
              +  T T +     + ++++EA    + M  +G VP     +    D + QG
Sbjct: 482 YDMDLATSTMLVHLLCKVRRLEEAFVEFEDMIRRGIVPQYLTFQRMKADLKKQG 535



 Score = 46.2 bits (108), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 33/159 (20%), Positives = 70/159 (44%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+   M  EG+  NA+    + DAL++ G   EAL +  +       P    + ++++ +
Sbjct: 332 EMVGDMTKEGIAPNAIVYNPIIDALAEAGRFKEALGMLERFHVLEIGPTDSTYNSLVKGF 391

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             AG    A ++   M++ G  P+A TY    +  +       + + +      +++  G
Sbjct: 392 CKAGDLVGASKILKMMISRGFLPSATTYNYFFRYFS-----RCRKIEEGMNLYTKLIQSG 446

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             P+  TY  + +     +K+D A  + ++M+  G+  D
Sbjct: 447 YTPDRLTYHLLVKMLCEEEKLDLAVQVSKEMRHNGYDMD 485


>gi|356561683|ref|XP_003549109.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 445

 Score = 77.8 bits (190), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 79/158 (50%), Gaps = 8/158 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
             +F +M+ + +  N V    + D L K+     A+ L  ++K++G  P+V ++T +++A
Sbjct: 291 MSLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPNVYSYTILLDA 350

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G+ + A + F  +L  G   N  TY V+I GL  A      + GD      +M GK
Sbjct: 351 LCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMINGLCKAG-----LFGDVMDLKSKMEGK 405

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFV 229
           G  PNA T+  +  A +   + D+A   L++M A+G +
Sbjct: 406 GCMPNAITFKTIICALLEKDENDKAEKFLREMIARGLL 443



 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 77/153 (50%), Gaps = 8/153 (5%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DAL+K+G   EA+ LF ++K K   P++V +T++I+        + A+ +  +M   G
Sbjct: 277 LIDALAKEGKIDEAMSLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQG 336

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN Y+Y +L+  L          L +A+++   ++ KG   N  TY  +     +A  
Sbjct: 337 IQPNVYSYTILLDALCKGGR-----LENAKQFFQHLLVKGYHLNVRTYNVMINGLCKAGL 391

Query: 213 VDEARGLLQQMKAKGFVPDE---KAVKEALIDK 242
             +   L  +M+ KG +P+    K +  AL++K
Sbjct: 392 FGDVMDLKSKMEGKGCMPNAITFKTIICALLEK 424



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 74/156 (47%), Gaps = 6/156 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L K+ L  +A  L++++  KG  P+V  +T +I  +   G  KEA  +   M    
Sbjct: 207 IIHCLCKNKLLGDACDLYSEMIVKGISPNVFTYTTLIHGFCIMGNLKEAFSLLNEMKLKN 266

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+ YT+ +LI  LA         + +A     EM  K M PN  TYT++ +   +   
Sbjct: 267 INPDVYTFNILIDALAKEGK-----IDEAMSLFEEMKHKNMFPNIVTYTSLIDGLCKNHH 321

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFR 248
           ++ A  L ++MK +G  P+  +    L+D   +G R
Sbjct: 322 LERAIALCKKMKEQGIQPNVYSY-TILLDALCKGGR 356



 Score = 74.3 bits (181), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 86/213 (40%), Gaps = 35/213 (16%)

Query: 54  PPPYDPFKKVVDEEPTDPR--NLQEIFHKMRTEGLTNNAVKMFDALSK-DGLTH--EALQ 108
           PPP   F  ++     + R   +  +F +    G+T +   +   ++    LTH   A  
Sbjct: 58  PPPTFLFNNILSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSILINCFCHLTHITFAFS 117

Query: 109 LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
           +FA I  +G+ P+ +    +I+     G+ K AL    +++A G   +  +Y  LI GL 
Sbjct: 118 VFANILKRGYHPNAITLNTLIKGLCFCGEIKRALHFHDKVVAQGFQLDQVSYGTLINGLC 177

Query: 169 AAADGNA------------------------------KILGDAQKYLMEMVGKGMRPNAG 198
            A +  A                              K+LGDA     EM+ KG+ PN  
Sbjct: 178 KAGETKAVARLLRKLEGHSVKPDLVMYTTIIHCLCKNKLLGDACDLYSEMIVKGISPNVF 237

Query: 199 TYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           TYT +   F     + EA  LL +MK K   PD
Sbjct: 238 TYTTLIHGFCIMGNLKEAFSLLNEMKLKNINPD 270


>gi|428179291|gb|EKX48163.1| hypothetical protein GUITHDRAFT_86178 [Guillardia theta CCMP2712]
          Length = 557

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 81/164 (49%), Gaps = 12/164 (7%)

Query: 75  QEIFHKMRTEGLTNNAVK-------MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           Q +F  +R  GL  +          M +A ++     +A ++  +++  G  PD + +T 
Sbjct: 88  QTLFSSLRGAGLCISLQPTGVSFNIMVNAYARRRKVEKAFKMLLEMRRAGCKPDQITYTT 147

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           +++A  +AGQ   A R+   M   G+ PNAY+Y  ++ GLA          G A + L  
Sbjct: 148 LVKACVAAGQFDRAERLLGEMEELGIPPNAYSYNCILYGLAQKLQ-----WGKATRLLQR 202

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           M   G+  N  +Y+    A VRA+++ EA  L ++M+ KG VP+
Sbjct: 203 MEEDGVEANLLSYSYCILACVRARRMKEASALFEEMRRKGIVPN 246



 Score = 45.8 bits (107), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 66/132 (50%), Gaps = 15/132 (11%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +A +L  ++++ G   ++++++  I A   A + KEA  +F  M   G+ PN +    ++
Sbjct: 195 KATRLLQRMEEDGVEANLLSYSYCILACVRARRMKEASALFEEMRRKGIVPNLFVMNTMM 254

Query: 165 KGLAA-----AADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGL 219
            G AA      A G  K+L D +          ++ NA T++++ EAF+ A   D+A  +
Sbjct: 255 SGYAAKGMVDEAQGIMKLLQDMR----------IKANAMTFSSLIEAFINAGYADKAVEV 304

Query: 220 LQQMKAKGFVPD 231
            ++M+  G   D
Sbjct: 305 KRKMEELGVEVD 316



 Score = 43.1 bits (100), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 59/135 (43%), Gaps = 13/135 (9%)

Query: 106 ALQLFAQIKDKGH----MPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYA 161
           A++ F+      H     P V  +  +I+AY   GQ + A      M+  G AP+     
Sbjct: 13  AVEAFSYFSSSQHPPSLRPSVHCYGTLIKAYGQLGQLEAAFETLNGMVKGGPAPSIRVIN 72

Query: 162 VLIKGLAAAADGNAKILGDAQKYLMEMVGKGM----RPNAGTYTAVFEAFVRAQKVDEAR 217
            L++    A +     L  AQ     + G G+    +P   ++  +  A+ R +KV++A 
Sbjct: 73  ALLQACVRAGN-----LTAAQTLFSSLRGAGLCISLQPTGVSFNIMVNAYARRRKVEKAF 127

Query: 218 GLLQQMKAKGFVPDE 232
            +L +M+  G  PD+
Sbjct: 128 KMLLEMRRAGCKPDQ 142


>gi|297745840|emb|CBI15896.3| unnamed protein product [Vitis vinifera]
          Length = 650

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 67/141 (47%), Gaps = 5/141 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M + L ++G   E   +  Q+   G  P+     AVI  +  A + ++ALR F  M++ G
Sbjct: 435 MINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKG 494

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P   TY  LI GL+ A         +A   + EM+ KG +PN  TY+ +     + +K
Sbjct: 495 CFPTVVTYNTLINGLSKAER-----FSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKK 549

Query: 213 VDEARGLLQQMKAKGFVPDEK 233
           +D A  L  Q   KGF PD K
Sbjct: 550 LDMALNLWCQALEKGFKPDVK 570



 Score = 63.5 bits (153), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 5/127 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +AL+ F  +  KG  P VV +  +I   + A +  EA  +   ML  G  PN  TY++L+
Sbjct: 482 DALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLM 541

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            GL        K L  A     + + KG +P+   +  +      + KV++A  L  +MK
Sbjct: 542 NGLC-----QGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMK 596

Query: 225 AKGFVPD 231
            +  VP+
Sbjct: 597 QRKCVPN 603



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/192 (20%), Positives = 81/192 (42%), Gaps = 44/192 (22%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+ + M  +G + +      + ++L+K+G   +AL+LF ++ ++G  PDV  +  +I+ 
Sbjct: 169 KELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDG 228

Query: 132 Y------------------------------------ASAGQGKEALRVFMRMLASGVAP 155
           +                                       G+  E+  ++ RM  +    
Sbjct: 229 FFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQ 288

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           + YTY+ LI GL  + +     L  A +   EM   G+ P+   Y  +   ++RA +++E
Sbjct: 289 DLYTYSTLIHGLCGSGN-----LDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEE 343

Query: 216 ARGLLQQMKAKG 227
              L + M+ +G
Sbjct: 344 CLELWKVMEKEG 355



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 70/154 (45%), Gaps = 9/154 (5%)

Query: 75  QEIFHKMRTEGLTNNAVKMFDALSKDGLT----HEALQLFAQIKDKGHMPDVVAHTAVIE 130
           +  F    T GL+ N ++ ++ L K         +A +L   + ++G  PDV ++  +I 
Sbjct: 134 ESFFLYFETMGLSPN-LQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLIN 192

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
           + A  G   +AL++F  M   GV P+   Y +LI G     D    IL  ++ +   + G
Sbjct: 193 SLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGD----ILNASEIWERLLKG 248

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
             + PN  +Y  +     +  K DE+  +  +MK
Sbjct: 249 PSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMK 282



 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 84/185 (45%), Gaps = 30/185 (16%)

Query: 71  PRNL--QEIFHKMRTEGLTNNAVKMFDALSK-DGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P++L  + +   +++E   ++A+ +FD++++  G +H    +F  I  +   P +VAH +
Sbjct: 5   PKSLSPKRVIKLLKSEKNPHSALSIFDSVTRFPGYSHTPY-VFHHILKRLFDPKLVAHVS 63

Query: 128 --------------------VIEAYASAGQGKEALRVFMRMLA-SGVAPNAYTYAVLIKG 166
                               VI+AYA      +AL +F RM    G  P   +Y  L+  
Sbjct: 64  RIVELIRTQKCKCPEDVALTVIKAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNA 123

Query: 167 LAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK 226
           L  +   +     +A+ + +     G+ PN  TY  + +   R ++ D+A+ LL  M  +
Sbjct: 124 LIESNKWD-----EAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQ 178

Query: 227 GFVPD 231
           GF PD
Sbjct: 179 GFSPD 183



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 1/99 (1%)

Query: 74  LQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           ++E+ HK     +   ++ M + L +      AL L+ Q  +KG  PDV  H  +I    
Sbjct: 522 VKEMLHKGWKPNMITYSLLM-NGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLC 580

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172
           S+G+ ++AL+++  M      PN  T+  L++G     D
Sbjct: 581 SSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRD 619



 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 77/191 (40%), Gaps = 38/191 (19%)

Query: 76  EIFHKM----RTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           EI+H+M    R + L   +  +   L   G    A +++ ++ + G  PDVV +  ++  
Sbjct: 276 EIWHRMKKNERGQDLYTYST-LIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNG 334

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKI-----------LGD 180
           Y  AG+ +E L ++  M   G      +Y +LI+GL   A  +  I             D
Sbjct: 335 YLRAGRIEECLELWKVMEKEG-CRTVVSYNILIRGLFENAKVDEAISIWELLPEKDCCAD 393

Query: 181 AQKY------------------LMEMVGKGMRPNAGT--YTAVFEAFVRAQKVDEARGLL 220
           +  Y                  ++E    G R +  T  Y+++     R  ++DE  G+L
Sbjct: 394 SMTYGVLVHGLCKNGYLNKALSILEEAENG-RGDLDTFAYSSMINGLCREGRLDEVAGVL 452

Query: 221 QQMKAKGFVPD 231
            QM   G  P+
Sbjct: 453 DQMTKHGCKPN 463



 Score = 45.1 bits (105), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 30/139 (21%), Positives = 57/139 (41%), Gaps = 6/139 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M + L K G   E+ +++ ++K      D+  ++ +I     +G    A RV+  M  +G
Sbjct: 261 MINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENG 320

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V+P+   Y  ++ G   A       + +  +    M  +G R    +Y  +        K
Sbjct: 321 VSPDVVVYNTMLNGYLRAGR-----IEECLELWKVMEKEGCR-TVVSYNILIRGLFENAK 374

Query: 213 VDEARGLLQQMKAKGFVPD 231
           VDEA  + + +  K    D
Sbjct: 375 VDEAISIWELLPEKDCCAD 393


>gi|356523285|ref|XP_003530271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Glycine max]
          Length = 703

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 79/151 (52%), Gaps = 8/151 (5%)

Query: 74  LQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           L E FH        NN ++    L K+G  H+A ++ + + + G   ++V +  +IE Y 
Sbjct: 387 LSEKFHVKPDVFTCNNLIQ---GLCKEGRVHDAARIHSSMVEMGLQGNIVTYNFLIEGYL 443

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
           +A +  EAL+++   + SG +PN+ TY+V+I GL        ++L  A+    +M   G+
Sbjct: 444 AARKLIEALKLWKYAVESGFSPNSMTYSVMINGLC-----KMQMLSVARGLFCKMKDSGI 498

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           RP    Y A+  +  R   +++AR L Q+M+
Sbjct: 499 RPTVIDYNALMTSLCREDSLEQARSLFQEMR 529



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 74/158 (46%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +M  EGL  +      +  A   +G      +LF ++  +   P+VV ++ +++   
Sbjct: 207 LLEEMEREGLKADVFVYSSLISAFCGEGDIETGRELFDEMLRRKVSPNVVTYSCLMQGLG 266

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G+ +EA  +   M A GV P+   Y VL  GL    +G A   GDA K L  MV KG 
Sbjct: 267 RTGRWREASEMLKDMTARGVRPDVVAYTVLADGLCK--NGRA---GDAIKVLDLMVQKGE 321

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            P   TY  V     +  ++D+A G+++ M  KG  PD
Sbjct: 322 EPGTLTYNVVVNGLCKEDRMDDAFGVVEMMVKKGKKPD 359



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 8/157 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+F +M    ++ N V    +   L + G   EA ++   +  +G  PDVVA+T + + 
Sbjct: 240 RELFDEMLRRKVSPNVVTYSCLMQGLGRTGRWREASEMLKDMTARGVRPDVVAYTVLADG 299

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G+  +A++V   M+  G  P   TY V++ GL          + DA   +  MV K
Sbjct: 300 LCKNGRAGDAIKVLDLMVQKGEEPGTLTYNVVVNGLCKEDR-----MDDAFGVVEMMVKK 354

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
           G +P+A TY  + +    A K+ EA  L + + ++ F
Sbjct: 355 GKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSEKF 391



 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 65/140 (46%), Gaps = 7/140 (5%)

Query: 93  MFDALSKDGLTHEALQLF-AQIKDKGHM-PDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           +   L   G  HEA+ L+   + +K H+ PDV     +I+     G+  +A R+   M+ 
Sbjct: 366 LLKGLCGAGKIHEAMDLWKLLLSEKFHVKPDVFTCNNLIQGLCKEGRVHDAARIHSSMVE 425

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
            G+  N  TY  LI+G  AA     + L +A K     V  G  PN+ TY+ +     + 
Sbjct: 426 MGLQGNIVTYNFLIEGYLAA-----RKLIEALKLWKYAVESGFSPNSMTYSVMINGLCKM 480

Query: 211 QKVDEARGLLQQMKAKGFVP 230
           Q +  ARGL  +MK  G  P
Sbjct: 481 QMLSVARGLFCKMKDSGIRP 500



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 89/198 (44%), Gaps = 32/198 (16%)

Query: 60  FKKVVDEEPTDP----------RNLQE---------IFHKMRTEGLTNNAVKMFDALSKD 100
           F + +D +PT P           NL++         ++HKM    L         AL++ 
Sbjct: 28  FHRTIDNDPTSPPSEPACSTLIDNLRKARQYDAVVSVYHKM-VSALVLPRFTSLSALTES 86

Query: 101 GL-THE---ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS--GVA 154
            + TH    A  + + +  +G   +V     V++ +  +GQ  +A+ +F +M  +   V 
Sbjct: 87  FVNTHHPSFAFSVLSLMTKRGFGVNVYNLNLVLKGFCRSGQCDKAMSLFSQMKRNYDCVV 146

Query: 155 PNAYTYAVLIKGLAAAAD-GNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV 213
           P+  TY  L+ G   A     A++L +A K      G   RPN  TY+ + + + ++ +V
Sbjct: 147 PDCVTYNTLVNGFCKAKRLAEARVLFEAMKK-----GGDCRPNLVTYSVLIDCYCKSGEV 201

Query: 214 DEARGLLQQMKAKGFVPD 231
            E  GLL++M+ +G   D
Sbjct: 202 GEGLGLLEEMEREGLKAD 219



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/148 (27%), Positives = 70/148 (47%), Gaps = 9/148 (6%)

Query: 86  LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVF 145
           LT N V   + L K+    +A  +   +  KG  PD V +  +++    AG+  EA+ ++
Sbjct: 326 LTYNVV--VNGLCKEDRMDDAFGVVEMMVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLW 383

Query: 146 MRMLAS--GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAV 203
             +L+    V P+ +T   LI+GL          + DA +    MV  G++ N  TY  +
Sbjct: 384 KLLLSEKFHVKPDVFTCNNLIQGLCKEGR-----VHDAARIHSSMVEMGLQGNIVTYNFL 438

Query: 204 FEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            E ++ A+K+ EA  L +     GF P+
Sbjct: 439 IEGYLAARKLIEALKLWKYAVESGFSPN 466



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 72/166 (43%), Gaps = 8/166 (4%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F KM+  G+    +    +  +L ++    +A  LF ++++  H  DVV+   +I+   
Sbjct: 489 LFCKMKDSGIRPTVIDYNALMTSLCREDSLEQARSLFQEMRNVNHNVDVVSFNIIIDGTL 548

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG  K A  +   M    + P+A T+++LI   +        +L +A     +MV  G 
Sbjct: 549 KAGDVKSAKELLSEMFMMDLVPDAVTFSILINRFSKLG-----MLDEAMGLYEKMVSCGH 603

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
            P    + ++ + +    + ++   LL QM  K  V D K     L
Sbjct: 604 VPGVVVFDSLLKGYGLKGETEKIISLLHQMADKDVVLDSKLTSTIL 649


>gi|225434476|ref|XP_002278184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09060
           [Vitis vinifera]
          Length = 691

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 68/141 (48%), Gaps = 5/141 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M + L ++G   E   +  Q+   G  P+     AVI  +  A + ++ALR F  M++ G
Sbjct: 435 MINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKG 494

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P   TY  LI GL+      A+   +A   + EM+ KG +PN  TY+ +     + +K
Sbjct: 495 CFPTVVTYNTLINGLS-----KAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKK 549

Query: 213 VDEARGLLQQMKAKGFVPDEK 233
           +D A  L  Q   KGF PD K
Sbjct: 550 LDMALNLWCQALEKGFKPDVK 570



 Score = 63.2 bits (152), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 5/127 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +AL+ F  +  KG  P VV +  +I   + A +  EA  +   ML  G  PN  TY++L+
Sbjct: 482 DALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLM 541

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            GL        K L  A     + + KG +P+   +  +      + KV++A  L  +MK
Sbjct: 542 NGLC-----QGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMK 596

Query: 225 AKGFVPD 231
            +  VP+
Sbjct: 597 QRKCVPN 603



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/192 (20%), Positives = 81/192 (42%), Gaps = 44/192 (22%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+ + M  +G + +      + ++L+K+G   +AL+LF ++ ++G  PDV  +  +I+ 
Sbjct: 169 KELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDG 228

Query: 132 Y------------------------------------ASAGQGKEALRVFMRMLASGVAP 155
           +                                       G+  E+  ++ RM  +    
Sbjct: 229 FFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQ 288

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           + YTY+ LI GL  + +     L  A +   EM   G+ P+   Y  +   ++RA +++E
Sbjct: 289 DLYTYSTLIHGLCGSGN-----LDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEE 343

Query: 216 ARGLLQQMKAKG 227
              L + M+ +G
Sbjct: 344 CLELWKVMEKEG 355



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 69/157 (43%), Gaps = 6/157 (3%)

Query: 74  LQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           ++E+ HK     +   ++ M + L +      AL L+ Q  +KG  PDV  H  +I    
Sbjct: 522 VKEMLHKGWKPNMITYSLLM-NGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLC 580

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
           S+G+ ++AL+++  M      PN  T+  L++G     D        A K    ++  G 
Sbjct: 581 SSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRD-----FERASKIWDHILQYGP 635

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           +P+  +Y    +      ++ +A G L     +G +P
Sbjct: 636 QPDIISYNITLKGLCSCHRISDAVGFLNDAVDRGVLP 672



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 70/154 (45%), Gaps = 9/154 (5%)

Query: 75  QEIFHKMRTEGLTNNAVKMFDALSKDGLT----HEALQLFAQIKDKGHMPDVVAHTAVIE 130
           +  F    T GL+ N ++ ++ L K         +A +L   + ++G  PDV ++  +I 
Sbjct: 134 ESFFLYFETMGLSPN-LQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLIN 192

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
           + A  G   +AL++F  M   GV P+   Y +LI G     D    IL  ++ +   + G
Sbjct: 193 SLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGD----ILNASEIWERLLKG 248

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
             + PN  +Y  +     +  K DE+  +  +MK
Sbjct: 249 PSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMK 282



 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 84/185 (45%), Gaps = 30/185 (16%)

Query: 71  PRNL--QEIFHKMRTEGLTNNAVKMFDALSK-DGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P++L  + +   +++E   ++A+ +FD++++  G +H    +F  I  +   P +VAH +
Sbjct: 5   PKSLSPKRVIKLLKSEKNPHSALSIFDSVTRFPGYSHTP-YVFHHILKRLFDPKLVAHVS 63

Query: 128 --------------------VIEAYASAGQGKEALRVFMRMLA-SGVAPNAYTYAVLIKG 166
                               VI+AYA      +AL +F RM    G  P   +Y  L+  
Sbjct: 64  RIVELIRTQKCKCPEDVALTVIKAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNA 123

Query: 167 LAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK 226
           L  +   +     +A+ + +     G+ PN  TY  + +   R ++ D+A+ LL  M  +
Sbjct: 124 LIESNKWD-----EAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQ 178

Query: 227 GFVPD 231
           GF PD
Sbjct: 179 GFSPD 183



 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 44/191 (23%), Positives = 77/191 (40%), Gaps = 38/191 (19%)

Query: 76  EIFHKM----RTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           EI+H+M    R + L   +  +   L   G    A +++ ++ + G  PDVV +  ++  
Sbjct: 276 EIWHRMKKNERGQDLYTYST-LIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNG 334

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKI-----------LGD 180
           Y  AG+ +E L ++  M   G      +Y +LI+GL   A  +  I             D
Sbjct: 335 YLRAGRIEECLELWKVMEKEG-CRTVVSYNILIRGLFENAKVDEAISIWELLPEKDCCAD 393

Query: 181 AQKY------------------LMEMVGKGMRPNAGT--YTAVFEAFVRAQKVDEARGLL 220
           +  Y                  ++E    G R +  T  Y+++     R  ++DE  G+L
Sbjct: 394 SMTYGVLVHGLCKNGYLNKALSILEEAENG-RGDLDTFAYSSMINGLCREGRLDEVAGVL 452

Query: 221 QQMKAKGFVPD 231
            QM   G  P+
Sbjct: 453 DQMTKHGCKPN 463



 Score = 45.1 bits (105), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 30/139 (21%), Positives = 57/139 (41%), Gaps = 6/139 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M + L K G   E+ +++ ++K      D+  ++ +I     +G    A RV+  M  +G
Sbjct: 261 MINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENG 320

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V+P+   Y  ++ G   A       + +  +    M  +G R    +Y  +        K
Sbjct: 321 VSPDVVVYNTMLNGYLRAGR-----IEECLELWKVMEKEGCR-TVVSYNILIRGLFENAK 374

Query: 213 VDEARGLLQQMKAKGFVPD 231
           VDEA  + + +  K    D
Sbjct: 375 VDEAISIWELLPEKDCCAD 393


>gi|115463377|ref|NP_001055288.1| Os05g0355200 [Oryza sativa Japonica Group]
 gi|55168028|gb|AAV43896.1| unknown protein [Oryza sativa Japonica Group]
 gi|55168069|gb|AAV43937.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578839|dbj|BAF17202.1| Os05g0355200 [Oryza sativa Japonica Group]
          Length = 632

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 88/198 (44%), Gaps = 44/198 (22%)

Query: 72  RNLQEIFHKMRTEGLTNNAVKMFD----ALSKDGLTHEALQLFAQIKDK----------- 116
           +N   +F  MRT G  ++ V+ F+    AL+++GL  EA Q+F +++D+           
Sbjct: 272 KNAVGVFEMMRTHGF-DDGVESFNCLLVALAQEGLGREANQVFDRMRDRYAPDLRSYTAL 330

Query: 117 -----------------------GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGV 153
                                  G  PDVV H  +IE      +  EA+++F  M A G 
Sbjct: 331 MLAWCNARNLVEAGRVWNEMLENGLKPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGP 390

Query: 154 APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV 213
           APN +TY +LI+            +  A +   EM   G +P+  TYT +   +  A+++
Sbjct: 391 APNVWTYTMLIRDHCKRGK-----MDMAMRCFEEMQDVGCQPDVATYTCLLVGYGNAKRM 445

Query: 214 DEARGLLQQMKAKGFVPD 231
           D    LL++M  KG  PD
Sbjct: 446 DRVTALLEEMTQKGCPPD 463



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 11/168 (6%)

Query: 69  TDPRNLQE---IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDV 122
            + RNL E   ++++M   GL  + V    M + L +     EA+++F  +K KG  P+V
Sbjct: 335 CNARNLVEAGRVWNEMLENGLKPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGPAPNV 394

Query: 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQ 182
             +T +I  +   G+   A+R F  M   G  P+  TY  L+ G      GNAK +    
Sbjct: 395 WTYTMLIRDHCKRGKMDMAMRCFEEMQDVGCQPDVATYTCLLVGY-----GNAKRMDRVT 449

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
             L EM  KG  P+  TY A+ +        D+A  + ++M  KG  P
Sbjct: 450 ALLEEMTQKGCPPDGRTYNALIKLLTNRNMPDDAARIYKKMIKKGLEP 497



 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 77/157 (49%), Gaps = 8/157 (5%)

Query: 77  IFHKMRTEG-LTNNAVKM-FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           +  +M  EG L  +A K+   + +  G    A+ +F  ++  G    V +   ++ A A 
Sbjct: 243 LIQEMGKEGALCMDAFKIAIKSFAAAGEIKNAVGVFEMMRTHGFDDGVESFNCLLVALAQ 302

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            G G+EA +VF RM     AP+  +Y  L+      A  NA+ L +A +   EM+  G++
Sbjct: 303 EGLGREANQVFDRM-RDRYAPDLRSYTALM-----LAWCNARNLVEAGRVWNEMLENGLK 356

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           P+   +  + E  +R Q+  EA  + + MKAKG  P+
Sbjct: 357 PDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGPAPN 393



 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 4/119 (3%)

Query: 109 LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
           L  ++  KG  PD   + A+I+   +     +A R++ +M+  G+ P  +TY +++K   
Sbjct: 451 LLEEMTQKGCPPDGRTYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYF 510

Query: 169 AAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
               G   ++G A     EM  KG+ P+  +YT      +R  + +EA   +++M  KG
Sbjct: 511 LG--GRNYMMGCA--VWEEMHRKGICPDVNSYTVFINGHIRHGRPEEACKYIEEMIQKG 565



 Score = 42.7 bits (99), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 66/145 (45%), Gaps = 8/145 (5%)

Query: 84  EGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQG-KEAL 142
           +G T NA  +   L+   +  +A +++ ++  KG  P +  +  ++++Y   G+      
Sbjct: 463 DGRTYNA--LIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYFLGGRNYMMGC 520

Query: 143 RVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTA 202
            V+  M   G+ P+  +Y V I G      G  +   +A KY+ EM+ KGM+     Y  
Sbjct: 521 AVWEEMHRKGICPDVNSYTVFING--HIRHGRPE---EACKYIEEMIQKGMKTPQIDYNK 575

Query: 203 VFEAFVRAQKVDEARGLLQQMKAKG 227
               F +A K D    L Q++K  G
Sbjct: 576 FAADFSKAGKPDILYELAQKVKFTG 600


>gi|302780493|ref|XP_002972021.1| hypothetical protein SELMODRAFT_412471 [Selaginella moellendorffii]
 gi|300160320|gb|EFJ26938.1| hypothetical protein SELMODRAFT_412471 [Selaginella moellendorffii]
          Length = 2052

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 79/166 (47%), Gaps = 17/166 (10%)

Query: 66   EEPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAH 125
            E PTD      + H +  +G  N   ++            A +LF ++ DKGH P  V +
Sbjct: 1797 ECPTDIVTYNTLIHGLCRKG--NGRFRV----------ERAFRLFEEMVDKGHTPTSVTY 1844

Query: 126  TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185
            T VI+A       ++A +V   M  +G A +  TY +LI   A A      ++  A    
Sbjct: 1845 TVVIDALLRVKMDEQAQKVLDLMHENGCAFDLVTYNMLINRFAKAG-----MMDKAMDLF 1899

Query: 186  MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +EM  +G  P+  TY ++ + F +A KV+EA  L  +MKA+G  P+
Sbjct: 1900 VEMPTRGCIPDVVTYNSIVDGFCKAGKVEEANKLFAEMKARGIFPN 1945



 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 88/188 (46%), Gaps = 32/188 (17%)

Query: 75   QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            Q++   M   G   + V    + +  +K G+  +A+ LF ++  +G +PDVV + ++++ 
Sbjct: 1861 QKVLDLMHENGCAFDLVTYNMLINRFAKAGMMDKAMDLFVEMPTRGCIPDVVTYNSIVDG 1920

Query: 132  YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA---DGNAKI-------LGDA 181
            +  AG+ +EA ++F  M A G+ PN  TY  +      A    D +A +       L DA
Sbjct: 1921 FCKAGKVEEANKLFAEMKARGIFPNGRTYTSITDACLKAGRMQDAHAYLVEMRKEGLVDA 1980

Query: 182  QKY-------------------LMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
              Y                   L EM+ KG +PN  T+  VFEA  +    D+A+ ++Q+
Sbjct: 1981 ISYVALISTICKLGKGKLGFQLLREMLEKGFKPNLVTFNVVFEALSKESNTDDAKIMIQE 2040

Query: 223  MKAKGFVP 230
            ++ +   P
Sbjct: 2041 LRQQHSSP 2048



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 80/156 (51%), Gaps = 8/156 (5%)

Query: 77   IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
            +F +M  +G T  +V    + DAL +  +  +A ++   + + G   D+V +  +I  +A
Sbjct: 1828 LFEEMVDKGHTPTSVTYTVVIDALLRVKMDEQAQKVLDLMHENGCAFDLVTYNMLINRFA 1887

Query: 134  SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             AG   +A+ +F+ M   G  P+  TY  ++ G   A       + +A K   EM  +G+
Sbjct: 1888 KAGMMDKAMDLFVEMPTRGCIPDVVTYNSIVDGFCKAGK-----VEEANKLFAEMKARGI 1942

Query: 194  RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFV 229
             PN  TYT++ +A ++A ++ +A   L +M+ +G V
Sbjct: 1943 FPNGRTYTSITDACLKAGRMQDAHAYLVEMRKEGLV 1978



 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 61/135 (45%), Gaps = 1/135 (0%)

Query: 97   LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
            L K G   EAL L   +      PD+  +  +I A    G+ ++A  +   M A     +
Sbjct: 1742 LCKHGKEKEALDLLHSMATTSCAPDIYTYNILINALCKVGRLEDAQGLVEMMQARECPTD 1801

Query: 157  AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
              TY  LI GL    +G  ++   A +   EMV KG  P + TYT V +A +R +  ++A
Sbjct: 1802 IVTYNTLIHGLCRKGNGRFRV-ERAFRLFEEMVDKGHTPTSVTYTVVIDALLRVKMDEQA 1860

Query: 217  RGLLQQMKAKGFVPD 231
            + +L  M   G   D
Sbjct: 1861 QKVLDLMHENGCAFD 1875


>gi|255660822|gb|ACU25580.1| pentatricopeptide repeat-containing protein [Mulguraea scoparia]
          Length = 418

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 108/237 (45%), Gaps = 15/237 (6%)

Query: 2   AATAILRWLLHSPSPKRS-LRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPF 60
           +A+A+   +L +   +RS + + +  + A L+      + +  +  +  + K   P+D  
Sbjct: 47  SASAVFAAILETKGTQRSDIYVFSGLITAYLESGFLRDAIECYR--LTKEHKFRVPFDTC 104

Query: 61  KKVVDEEPTDPRNLQEI--FHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIK 114
           +KV+ E     +  + +  F++   E     ++  F+ L     K G    A  +F  I 
Sbjct: 105 RKVI-EHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHNFCKGGEIXLAQSVFDSIT 163

Query: 115 DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174
             G  P VV+   ++  Y   G   E  R+   M ASGV P+ YTY+VLI GL   +   
Sbjct: 164 KWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVQPDVYTYSVLINGLCKESK-- 221

Query: 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              + DA     EM+  G+ PN  T+T + +   +  +VD A  + +QM ++  +PD
Sbjct: 222 ---MDDANALFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPD 275



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 81/188 (43%), Gaps = 33/188 (17%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M   GL  N V    + D   K+G    A++++ Q+  +  +PD++ +  +I    
Sbjct: 228 LFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLC 287

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKG------LAAAADGNAKILG-------- 179
             G  K+A  +   M   G+ P+  TY  LI G      L  A +   +++         
Sbjct: 288 KKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDV 347

Query: 180 ----------------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
                           DA+K L EM+  G++P  GTYT +   F +   V     LL++M
Sbjct: 348 AYTALISXLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEM 407

Query: 224 KAKGFVPD 231
           +  G++P+
Sbjct: 408 QRDGYLPN 415


>gi|255564599|ref|XP_002523294.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223537382|gb|EEF39010.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 544

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 69/138 (50%), Gaps = 5/138 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +  AL K      A+++  ++   G +P+VV +T ++  Y+S G    A +VF  +   G
Sbjct: 207 LIKALCKKNDVESAVKVLDEMPAMGMIPNVVTYTTILGGYSSRGDMVNANKVFGELFDRG 266

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+A TY +L+ G           L DA K + +M   G+ PN  TY  + EA+ + +K
Sbjct: 267 WLPDATTYTILMNGYCEQGR-----LADAIKLMDDMGENGVEPNEVTYGVMVEAYCKEKK 321

Query: 213 VDEARGLLQQMKAKGFVP 230
             EAR LL  M  + +VP
Sbjct: 322 AGEARNLLDDMLERQYVP 339



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 77/157 (49%), Gaps = 9/157 (5%)

Query: 76  EIFHKM-RTEGLTNNAV--KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E++ +M +   + +NA+   +   L K+G   EA +LF +  ++G +P ++ +  +I   
Sbjct: 362 ELWKRMLKKNCMPDNAIMSTLIHWLCKEGKVWEARKLFGEF-ERGAIPSLLTYNTLIAGM 420

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+  EA +++  M+  G  PNA+TY +LIKG +    GNAK   +  + L EM+   
Sbjct: 421 CEKGELSEAGKLWDDMMEKGYKPNAFTYNMLIKGFSKI--GNAK---EGIRILEEMLDNR 475

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFV 229
             PN  TY  + E   +     E   ++    A G V
Sbjct: 476 CMPNKSTYAILIEELCKMGMEGEVDKVVSMAMASGGV 512



 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 71/153 (46%), Gaps = 7/153 (4%)

Query: 90  AVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRML 149
             K+ D L + G   EA +L+ ++  K  MPD    + +I      G+  EA ++F    
Sbjct: 344 CCKVIDVLCEAGKIEEACELWKRMLKKNCMPDNAIMSTLIHWLCKEGKVWEARKLFGE-F 402

Query: 150 ASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
             G  P+  TY  LI G+    +     L +A K   +M+ KG +PNA TY  + + F +
Sbjct: 403 ERGAIPSLLTYNTLIAGMCEKGE-----LSEAGKLWDDMMEKGYKPNAFTYNMLIKGFSK 457

Query: 210 AQKVDEARGLLQQMKAKGFVPDEKAVKEALIDK 242
                E   +L++M     +P+ K+    LI++
Sbjct: 458 IGNAKEGIRILEEMLDNRCMPN-KSTYAILIEE 489



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 6/125 (4%)

Query: 109 LFAQIKDK-GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
           +F   + K G +P+V     +I+A       + A++V   M A G+ PN  TY  ++ G 
Sbjct: 187 MFKNCRSKYGVLPNVFTCNILIKALCKKNDVESAVKVLDEMPAMGMIPNVVTYTTILGGY 246

Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
           ++  D     + +A K   E+  +G  P+A TYT +   +    ++ +A  L+  M   G
Sbjct: 247 SSRGD-----MVNANKVFGELFDRGWLPDATTYTILMNGYCEQGRLADAIKLMDDMGENG 301

Query: 228 FVPDE 232
             P+E
Sbjct: 302 VEPNE 306


>gi|302784458|ref|XP_002974001.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
 gi|300158333|gb|EFJ24956.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
          Length = 561

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 85/187 (45%), Gaps = 11/187 (5%)

Query: 51  SKLPPPYDPFKKVVDEEPTDPRNLQ--EIFHKMRT--EGLTN--NAVKMFDALSKDGLTH 104
           +K  P    F  +VD      R  +  +IF  M T  + L N      + + L KDG   
Sbjct: 94  TKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLD 153

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
            A++L   + + G  P+V+ ++ ++E    AG+  +   +   M   G  P+   Y  L+
Sbjct: 154 RAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLL 213

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            GL       ++ L +A + +  M+  G  P   TY ++ E F R+++VD A  L+Q M 
Sbjct: 214 NGLC-----KSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMS 268

Query: 225 AKGFVPD 231
            +G  PD
Sbjct: 269 ERGCPPD 275



 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 65/127 (51%), Gaps = 1/127 (0%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A +L   + ++G  PDV+ +  VI       +  +A  +  +M+A+   P+  TY+ +I 
Sbjct: 260 AFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIID 319

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGK-GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           GL      +A    +A   ++EM+ + G  PNAGTY  V E   RA+K  +A  LL++M 
Sbjct: 320 GLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMI 379

Query: 225 AKGFVPD 231
               VPD
Sbjct: 380 DSEVVPD 386



 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 82/190 (43%), Gaps = 10/190 (5%)

Query: 47  VNTKSKLPPPYDPFKKVVDEEPTDPR--NLQEIFHKMRTEGLTNNAVK---MFDALSKDG 101
           ++T S+  P    +  V++    D +     E+   M   G   N +    + + L K G
Sbjct: 126 MHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAG 185

Query: 102 LTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYA 161
            T +   L  ++  +G  PDV+ +  ++     + +  EAL +   M+ SG  P   TY 
Sbjct: 186 RTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYN 245

Query: 162 VLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221
            L++         +K +  A + +  M  +G  P+   Y  V     R  ++D+A+ LL+
Sbjct: 246 SLMELFC-----RSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLK 300

Query: 222 QMKAKGFVPD 231
           QM A   VPD
Sbjct: 301 QMVAARCVPD 310



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 71/175 (40%), Gaps = 41/175 (23%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI----------------------- 129
           +   L K G   +A +L  +++D+G  P V  H  VI                       
Sbjct: 36  LIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIKGLCKAGRFGDALGYFKTVAGTK 95

Query: 130 ------------EAYASAGQGKEALRVFMRM-LASGVAPNAYTYAVLIKGLAAAADGNAK 176
                       +A   +G+ +EA ++F  M  +S   PN  TY  +I GL    DG   
Sbjct: 96  CTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGL--CKDGK-- 151

Query: 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            L  A + L  M   G  PN  TY+ + E   +A + D+   LLQ+M  +GF PD
Sbjct: 152 -LDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPD 205



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 6/133 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
           +L K      A ++F  + ++   P+ VA+ A+I+  +  G+  +A+RVF  M+ S   P
Sbjct: 396 SLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVES-FRP 454

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
              TY  ++ GL          + +A + +  M+ K   P+  +Y A+     R   V+E
Sbjct: 455 GVATYNSVLDGLCGVGR-----IEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEE 509

Query: 216 ARGLLQQMKAKGF 228
           A  L Q ++AKGF
Sbjct: 510 AYELFQAVEAKGF 522



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 70/159 (44%), Gaps = 9/159 (5%)

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           EI   M+  G   NA     + + L +   + +AL L  ++ D   +PD+ + + VI + 
Sbjct: 338 EILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSL 397

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             +     A ++F  M      PN   YA LI GL+   + +  +       + E++ + 
Sbjct: 398 CKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAV------RVFELMVES 451

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            RP   TY +V +      +++EA  +++ M  K   PD
Sbjct: 452 FRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPD 490



 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/183 (21%), Positives = 78/183 (42%), Gaps = 11/183 (6%)

Query: 51  SKLPPPYDPFKKVVDE--EPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHE 105
           S++ P    F  V+    +  D     +IF  M       N V    + D LSK G   +
Sbjct: 381 SEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDK 440

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A+++F ++  +   P V  + +V++     G+ +EA+R+   M+     P+  +Y  LI+
Sbjct: 441 AVRVF-ELMVESFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIR 499

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           GL          + +A +    +  KG     G Y  +     + +++ +A G+  ++  
Sbjct: 500 GLC-----RVSCVEEAYELFQAVEAKGFAMEVGVYNVLVNELCKKKRLSDAHGVANKLIE 554

Query: 226 KGF 228
            G+
Sbjct: 555 AGY 557



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 61/130 (46%), Gaps = 8/130 (6%)

Query: 94  FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGV 153
            + L + G   +A+QLF   +++  +P+   + ++I     AG+  +A  +   M   G+
Sbjct: 5   LNLLVRAGQHGQAVQLF---REERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGI 61

Query: 154 APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV 213
            P    +  +IKGL  A        GDA  Y   + G    P+  T+  + +A V++ +V
Sbjct: 62  PPGVAVHNGVIKGLCKAGR-----FGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRV 116

Query: 214 DEARGLLQQM 223
           +EA  + + M
Sbjct: 117 EEAFQIFESM 126


>gi|302803484|ref|XP_002983495.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
 gi|300148738|gb|EFJ15396.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
          Length = 561

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 85/187 (45%), Gaps = 11/187 (5%)

Query: 51  SKLPPPYDPFKKVVDEEPTDPRNLQ--EIFHKMRT--EGLTN--NAVKMFDALSKDGLTH 104
           +K  P    F  +VD      R  +  +IF  M T  + L N      + + L KDG   
Sbjct: 94  TKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLD 153

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
            A++L   + + G  P+V+ ++ ++E    AG+  +   +   M   G  P+   Y  L+
Sbjct: 154 RAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLL 213

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            GL       ++ L +A + +  M+  G  P   TY ++ E F R+++VD A  L+Q M 
Sbjct: 214 NGLC-----KSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMS 268

Query: 225 AKGFVPD 231
            +G  PD
Sbjct: 269 ERGCPPD 275



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 65/127 (51%), Gaps = 1/127 (0%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A +L   + ++G  PDV+ +  VI       +  +A  +  +M+A+   P+  TY+ +I 
Sbjct: 260 AFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIID 319

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGK-GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           GL      +A    +A   ++EM+ + G  PNAGTY  V E   RA+K  +A  LL++M 
Sbjct: 320 GLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMI 379

Query: 225 AKGFVPD 231
               VPD
Sbjct: 380 DSEVVPD 386



 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 82/190 (43%), Gaps = 10/190 (5%)

Query: 47  VNTKSKLPPPYDPFKKVVDEEPTDPR--NLQEIFHKMRTEGLTNNAVK---MFDALSKDG 101
           ++T S+  P    +  V++    D +     E+   M   G   N +    + + L K G
Sbjct: 126 MHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAG 185

Query: 102 LTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYA 161
            T +   L  ++  +G  PDV+ +  ++     + +  EAL +   M+ SG  P   TY 
Sbjct: 186 RTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYN 245

Query: 162 VLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221
            L++         +K +  A + +  M  +G  P+   Y  V     R  ++D+A+ LL+
Sbjct: 246 SLMELFC-----RSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLK 300

Query: 222 QMKAKGFVPD 231
           QM A   VPD
Sbjct: 301 QMVAARCVPD 310



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/175 (27%), Positives = 71/175 (40%), Gaps = 41/175 (23%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI----------------------- 129
           +   L K G   +A +L  +++D+G  P V  H  VI                       
Sbjct: 36  LIHGLCKAGKLDQAYELLDEMRDRGIPPGVAVHNGVIRGLCKAGRFGDALGYFKTVAGTK 95

Query: 130 ------------EAYASAGQGKEALRVFMRM-LASGVAPNAYTYAVLIKGLAAAADGNAK 176
                       +A   +G+ +EA ++F  M  +S   PN  TY  +I GL    DG   
Sbjct: 96  CTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGL--CKDGK-- 151

Query: 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            L  A + L  M   G  PN  TY+ + E   +A + D+   LLQ+M  +GF PD
Sbjct: 152 -LDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPD 205



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 6/133 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
           +L K      A ++F  + ++   P+ VA+ A+I+  +  G+  +A+RVF  M+ S   P
Sbjct: 396 SLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVES-FRP 454

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
              TY  ++ GL          + +A + +  M+ K   P+  +Y A+     R   V+E
Sbjct: 455 GVATYNSVLDGLCGVGR-----IEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEE 509

Query: 216 ARGLLQQMKAKGF 228
           A  L Q ++AKGF
Sbjct: 510 AYELFQAVEAKGF 522



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 70/159 (44%), Gaps = 9/159 (5%)

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           EI   M+  G   NA     + + L +   + +AL L  ++ D   +PD+ + + VI + 
Sbjct: 338 EILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSL 397

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             +     A ++F  M      PN   YA LI GL+   + +  +       + E++ + 
Sbjct: 398 CKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAV------RVFELMVES 451

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            RP   TY +V +      +++EA  +++ M  K   PD
Sbjct: 452 FRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPD 490



 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/183 (21%), Positives = 78/183 (42%), Gaps = 11/183 (6%)

Query: 51  SKLPPPYDPFKKVVDE--EPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHE 105
           S++ P    F  V+    +  D     +IF  M       N V    + D LSK G   +
Sbjct: 381 SEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDK 440

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A+++F ++  +   P V  + +V++     G+ +EA+R+   M+     P+  +Y  LI+
Sbjct: 441 AVRVF-ELMVESFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIR 499

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           GL          + +A +    +  KG     G Y  +     + +++ +A G+  ++  
Sbjct: 500 GLC-----RVSCVEEAYELFQAVEAKGFAMEVGVYNVLVNELCKKKRLSDAHGVANKLIE 554

Query: 226 KGF 228
            G+
Sbjct: 555 AGY 557



 Score = 47.0 bits (110), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 61/130 (46%), Gaps = 8/130 (6%)

Query: 94  FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGV 153
            + L + G   +A+QLF   +++  +P+   + ++I     AG+  +A  +   M   G+
Sbjct: 5   LNLLVRAGQHGQAVQLF---REERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGI 61

Query: 154 APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV 213
            P    +  +I+GL  A        GDA  Y   + G    P+  T+  + +A V++ +V
Sbjct: 62  PPGVAVHNGVIRGLCKAGR-----FGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRV 116

Query: 214 DEARGLLQQM 223
           +EA  + + M
Sbjct: 117 EEAFQIFESM 126


>gi|255660790|gb|ACU25564.1| pentatricopeptide repeat-containing protein [Verbena hispida]
          Length = 418

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 109/237 (45%), Gaps = 15/237 (6%)

Query: 2   AATAILRWLLHSPSPKRS-LRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPF 60
           +A+A+   +L +   +RS + + +  + A L+      + +  +  +  + K   P+D  
Sbjct: 47  SASAVFAAILETKGTQRSDIYVFSGLITAYLESGFLRDAIECYR--LTKEHKFRVPFDTC 104

Query: 61  KKVVDEEPTDPRNLQEI--FHKMRTEGLTNNAVKMFDALS----KDGLTHEALQLFAQIK 114
           +KV+ E     +  + +  F++   E     ++  F+ L     K+G    A  +F  I 
Sbjct: 105 RKVL-EHLMKLKYFKLVWGFYEENLECGYPASLYFFNILMHGFVKEGEIRLAQSVFDAIT 163

Query: 115 DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174
             G  P VV+   ++  Y   G   E  R+   M ASGV P+ YTY+VLI GL   +   
Sbjct: 164 KWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESK-- 221

Query: 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              + DA     EM+ KG+ PN  T+T + +   +  +VD A  + +QM ++   PD
Sbjct: 222 ---MDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 275



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 83/201 (41%), Gaps = 35/201 (17%)

Query: 63  VVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM 119
           +  E   D  N+  +F +M  +GL  N V    + D   K+G    A++++ Q+  +   
Sbjct: 216 LCKESKMDDANV--LFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 273

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD------- 172
           PD++ +  +I      G  K+A  +   M+  G+ P+  TY  LI G     D       
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKITYTTLIDGNCKEGDLETAFEY 333

Query: 173 ---------------GNAKILG--------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
                            A I G        DA+K L EM+  G++P  GTYT +   F +
Sbjct: 334 RKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCK 393

Query: 210 AQKVDEARGLLQQMKAKGFVP 230
              V     LL++M+  G+ P
Sbjct: 394 KGDVWTGSKLLKEMQRDGYKP 414


>gi|242046162|ref|XP_002460952.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
 gi|241924329|gb|EER97473.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
          Length = 796

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 48/156 (30%), Positives = 77/156 (49%), Gaps = 10/156 (6%)

Query: 72  RNLQEIFHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           + ++E+   M+ E   N++   +++L    S+ G   +   +  +IK  G  PD  ++  
Sbjct: 623 KKVEEVLTLMK-ENSINHSAATYNSLMHMYSRLGDCEKCEAILTEIKSSGMRPDRYSYNT 681

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           VI AY   GQ KEA R+F  M  SGV P+  TY + IK   A       I  D  +YL  
Sbjct: 682 VIYAYGRKGQMKEASRLFSEMKCSGVKPDIVTYNIFIKSYVANLMFEEAI--DLVRYL-- 737

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
            V +G +PN  TY ++ E + R  ++ EA+  L  +
Sbjct: 738 -VAQGCKPNERTYNSILEGYCRHGRMVEAKSFLSNL 772



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 87/167 (52%), Gaps = 8/167 (4%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F  +R+ G   + V    +     ++GL  E   +F ++K  G++P+   + ++I +Y+
Sbjct: 418 VFDDLRSAGYVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYS 477

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G   +A+ ++ RM+ +G+ P+  TY  +   L+A A G   +   A+K   EM  +  
Sbjct: 478 RCGLFDQAMEIYKRMIEAGIYPDISTYNAV---LSALARGGRWV--QAEKLFAEMEDRDC 532

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
           +P+  +Y+++  A+  A+K+D+ + L + + A+   P    VK  ++
Sbjct: 533 KPDELSYSSLLHAYANAKKLDKMKALSEDIYAQRIEPHNWLVKTLVL 579



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 8/157 (5%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +     + GL  EA Q+F ++K  G  PD V   ++++ Y  A + +EA+ V  +M  +G
Sbjct: 262 LISCCRRRGLYREAAQMFDEMKAAGFEPDKVTFNSLLDVYGKARRHEEAIGVLKKMENAG 321

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  TY  LI   A   DG   +L +A +   EM  +GM+P+  TYT +     R  K
Sbjct: 322 CTPSVVTYNSLIS--AYVKDG---LLEEALELKQEMEFRGMKPDVVTYTTLISGLDRIGK 376

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRG 249
           +D A     +M   G  P+      ALI  +  G RG
Sbjct: 377 IDAALATYSEMVRNGCSPN-LCTYNALI--KMHGVRG 410



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  KM   G T + V    +  A  KDGL  EAL+L  +++ +G  PDVV +T +I    
Sbjct: 313 VLKKMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLD 372

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G+   AL  +  M+ +G +PN  TY  LIK       G      +      ++   G 
Sbjct: 373 RIGKIDAALATYSEMVRNGCSPNLCTYNALIK-----MHGVRGKFTEMMIVFDDLRSAGY 427

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            P+  T+  +   F +     E  G+ ++MK  G++P+
Sbjct: 428 VPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPE 465



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 74/163 (45%), Gaps = 8/163 (4%)

Query: 72  RNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R   ++F +M+  G   + V    + D   K     EA+ +  ++++ G  P VV + ++
Sbjct: 273 REAAQMFDEMKAAGFEPDKVTFNSLLDVYGKARRHEEAIGVLKKMENAGCTPSVVTYNSL 332

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I AY   G  +EAL +   M   G+ P+  TY  LI GL    D   KI      Y  EM
Sbjct: 333 ISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGL----DRIGKIDAALATY-SEM 387

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           V  G  PN  TY A+ +      K  E   +   +++ G+VPD
Sbjct: 388 VRNGCSPNLCTYNALIKMHGVRGKFTEMMIVFDDLRSAGYVPD 430



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 9/131 (6%)

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA--AAADGNAKI 177
           PD  A+TA++  ++ AG+ ++A+ VF RM+  GV P   TY V++   +  +       +
Sbjct: 183 PDASAYTALVSEFSRAGRFRDAVAVFRRMVDGGVQPALVTYNVVLHVYSKMSVPWKEVVV 242

Query: 178 LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKE 237
           L D+ K        G+  +  TY  +     R     EA  +  +MKA GF PD K    
Sbjct: 243 LVDSMK------EDGIELDRYTYNTLISCCRRRGLYREAAQMFDEMKAAGFEPD-KVTFN 295

Query: 238 ALIDKRGQGFR 248
           +L+D  G+  R
Sbjct: 296 SLLDVYGKARR 306



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 5/127 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           E + L   +K+ G   D   +  +I      G  +EA ++F  M A+G  P+  T+  L+
Sbjct: 239 EVVVLVDSMKEDGIELDRYTYNTLISCCRRRGLYREAAQMFDEMKAAGFEPDKVTFNSLL 298

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
                   G A+   +A   L +M   G  P+  TY ++  A+V+   ++EA  L Q+M+
Sbjct: 299 D-----VYGKARRHEEAIGVLKKMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEME 353

Query: 225 AKGFVPD 231
            +G  PD
Sbjct: 354 FRGMKPD 360



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/147 (19%), Positives = 66/147 (44%), Gaps = 5/147 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M     K+ +  +  ++   +K+         + +++  Y+  G  ++   +   + +SG
Sbjct: 612 MVSIYGKNKMVKKVEEVLTLMKENSINHSAATYNSLMHMYSRLGDCEKCEAILTEIKSSG 671

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+ Y+Y  +I      A G    + +A +   EM   G++P+  TY    +++V    
Sbjct: 672 MRPDRYSYNTVI-----YAYGRKGQMKEASRLFSEMKCSGVKPDIVTYNIFIKSYVANLM 726

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEAL 239
            +EA  L++ + A+G  P+E+     L
Sbjct: 727 FEEAIDLVRYLVAQGCKPNERTYNSIL 753



 Score = 44.7 bits (104), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 41/191 (21%), Positives = 82/191 (42%), Gaps = 37/191 (19%)

Query: 76  EIFHKMRTEGL-----TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           EI+ +M   G+     T NAV    AL++ G   +A +LFA+++D+   PD +++++++ 
Sbjct: 487 EIYKRMIEAGIYPDISTYNAV--LSALARGGRWVQAEKLFAEMEDRDCKPDELSYSSLLH 544

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVL--------------------------- 163
           AYA+A +  +   +   + A  + P+ +    L                           
Sbjct: 545 AYANAKKLDKMKALSEDIYAQRIEPHNWLVKTLVLVNNKVNSLSETEKAFQELRRRRCSL 604

Query: 164 -IKGLAAAAD--GNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
            I  L A     G  K++   ++ L  M    +  +A TY ++   + R    ++   +L
Sbjct: 605 DINVLNAMVSIYGKNKMVKKVEEVLTLMKENSINHSAATYNSLMHMYSRLGDCEKCEAIL 664

Query: 221 QQMKAKGFVPD 231
            ++K+ G  PD
Sbjct: 665 TEIKSSGMRPD 675


>gi|356564530|ref|XP_003550506.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g11690-like [Glycine max]
          Length = 556

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 72/159 (45%), Gaps = 8/159 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +F KM   GL  N      + +   K GL  E  Q++  +   G +P+  A+  +I  
Sbjct: 213 KNLFCKMDRLGLVPNQHTYSVLMNGFFKQGLQREGFQMYENMNRSGIVPNAYAYNCLISE 272

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y + G   +A +VF  M   G+A    TY +LI GL        K  G+A K + ++   
Sbjct: 273 YCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGLC-----RGKKFGEAVKLVHKVNKV 327

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           G+ PN  TY  +   F    K+D A  L  Q+K+ G  P
Sbjct: 328 GLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSP 366



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 77/159 (48%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F +MR +G+    +    +   L +     EA++L  ++   G  P++V +  +I  +
Sbjct: 284 KVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGF 343

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+   A+R+F ++ +SG++P   TY  LI G +   +     L  A   + EM  + 
Sbjct: 344 CDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVEN-----LAGALDLVKEMEERC 398

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +  +  TYT + +AF R    D+A  +   M+  G VPD
Sbjct: 399 IARSKVTYTILIDAFARLNYTDKACEMHSLMEKSGLVPD 437



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/144 (27%), Positives = 66/144 (45%), Gaps = 5/144 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DA ++   T +A ++ + ++  G +PDV  ++ +I      G  KEA + F  +    
Sbjct: 409 LIDAFARLNYTDKACEMHSLMEKSGLVPDVYTYSVLIHGXCVNGNMKEASKPFKSLGEMH 468

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN+  Y  +I G     +G++     A + L EMV  GM PN  ++ +      R +K
Sbjct: 469 LQPNSVIYNTMIHG--YCKEGSSY---RALRLLNEMVHSGMVPNVASFCSTMGLLCRDEK 523

Query: 213 VDEARGLLQQMKAKGFVPDEKAVK 236
             EA  LL QM   G  P     K
Sbjct: 524 WKEAELLLGQMINSGLKPSVSLYK 547



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 66/150 (44%), Gaps = 8/150 (5%)

Query: 85  GLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEA 141
           GL+ N V    + D   K+G    A  LF ++   G +P+   ++ ++  +   G  +E 
Sbjct: 188 GLSPNVVIYTTLIDGCCKNGDVMLAKNLFCKMDRLGLVPNQHTYSVLMNGFFKQGLQREG 247

Query: 142 LRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYT 201
            +++  M  SG+ PNAY Y  LI         N  ++  A K   EM  KG+     TY 
Sbjct: 248 FQMYENMNRSGIVPNAYAYNCLISEYC-----NDGMVDKAFKVFAEMREKGIACGVMTYN 302

Query: 202 AVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +     R +K  EA  L+ ++   G  P+
Sbjct: 303 ILIGGLCRGKKFGEAVKLVHKVNKVGLSPN 332



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 59/135 (43%), Gaps = 5/135 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M     + G      +L A +++ G  P+VV +T +I+     G    A  +F +M   G
Sbjct: 164 MITGCCEAGYFVRVFRLLAVLEEFGLSPNVVIYTTLIDGCCKNGDVMLAKNLFCKMDRLG 223

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN +TY+VL+ G          +  +  +    M   G+ PNA  Y  +   +     
Sbjct: 224 LVPNQHTYSVLMNGFFKQG-----LQREGFQMYENMNRSGIVPNAYAYNCLISEYCNDGM 278

Query: 213 VDEARGLLQQMKAKG 227
           VD+A  +  +M+ KG
Sbjct: 279 VDKAFKVFAEMREKG 293



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 84/219 (38%), Gaps = 19/219 (8%)

Query: 20  LRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPF-KKVVDEEPTDPRNLQEIF 78
           LR+ + R+ ++L         Q T+ +  + S   P YD      V    TD        
Sbjct: 62  LRLISGRIPSSLML-------QLTQAHFTSCSTYTPLYDAIVNAYVHSHSTDQA--LTFL 112

Query: 79  HKMRTEG---LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASA 135
           H M  EG   L+N    +   L +     +A  +F  +K K  + +  +   +I     A
Sbjct: 113 HHMIHEGHAPLSNTFNNLLCLLIRSNYFDKAWWIFNVLKSKV-VLNAYSFGIMITGCCEA 171

Query: 136 GQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP 195
           G      R+   +   G++PN   Y  LI G     +G+  +   A+    +M   G+ P
Sbjct: 172 GYFVRVFRLLAVLEEFGLSPNVVIYTTLIDG--CCKNGDVML---AKNLFCKMDRLGLVP 226

Query: 196 NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
           N  TY+ +   F +     E   + + M   G VP+  A
Sbjct: 227 NQHTYSVLMNGFFKQGLQREGFQMYENMNRSGIVPNAYA 265



 Score = 40.4 bits (93), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 5/104 (4%)

Query: 100 DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYT 159
           +G   EA + F  + +    P+ V +  +I  Y   G    ALR+   M+ SG+ PN  +
Sbjct: 451 NGNMKEASKPFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVHSGMVPNVAS 510

Query: 160 YAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAV 203
           +   +  L    D   K   +A+  L +M+  G++P+   Y  V
Sbjct: 511 FCSTMGLL--CRDEKWK---EAELLLGQMINSGLKPSVSLYKMV 549


>gi|356499327|ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Glycine max]
          Length = 725

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 74/158 (46%), Gaps = 8/158 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           EI + M  +GL+ N V    +  AL KDG   EALQLF ++  KG  PD+    ++I   
Sbjct: 433 EIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGL 492

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               + +EAL ++  M   GV  N  TY  L+             +  A K + EM+ +G
Sbjct: 493 CKNHKMEEALSLYHDMFLEGVIANTVTYNTLVHAFLMRDS-----IQQAFKLVDEMLFRG 547

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
              +  TY  + +A  +   V++  GL ++M  KG  P
Sbjct: 548 CPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFP 585



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 77/159 (48%), Gaps = 10/159 (6%)

Query: 77  IFHKMRTEGLTNNAVKMFDALSKDGLTHEALQ----LFAQIKDKGHMPDVVAHTAVIEAY 132
           ++H M  EG+  N V  ++ L    L  +++Q    L  ++  +G   D + +  +I+A 
Sbjct: 504 LYHDMFLEGVIANTVT-YNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKAL 562

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G  ++ L +F  ML  G+ P   +  +LI GL      N     DA K+L +M+ +G
Sbjct: 563 CKTGAVEKGLGLFEEMLGKGIFPTIISCNILISGLCRTGKVN-----DALKFLQDMIHRG 617

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + P+  TY ++     +   V EA  L  +++++G  PD
Sbjct: 618 LTPDIVTYNSLINGLCKMGHVQEASNLFNKLQSEGIRPD 656



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 79/168 (47%), Gaps = 10/168 (5%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M D L K G    AL+L  ++  K   P+V+ +T +I  +   G+ +EA  +   M A G
Sbjct: 383 MIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAAEIVNSMSAKG 442

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           ++ N   Y  LI   A   DGN +   +A +   EM GKG +P+  T+ ++     +  K
Sbjct: 443 LSLNTVGYNCLI--CALCKDGNIE---EALQLFGEMSGKGCKPDIYTFNSLINGLCKNHK 497

Query: 213 VDEARGLLQQMKAKGFVPDE---KAVKEALI--DKRGQGFRGVINILF 255
           ++EA  L   M  +G + +      +  A +  D   Q F+ V  +LF
Sbjct: 498 MEEALSLYHDMFLEGVIANTVTYNTLVHAFLMRDSIQQAFKLVDEMLF 545



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 71/158 (44%), Gaps = 7/158 (4%)

Query: 75  QEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           + +F     + +T N   +  AL K G   + L LF ++  KG  P +++   +I     
Sbjct: 542 EMLFRGCPLDNITYNG--LIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISGLCR 599

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            G+  +AL+    M+  G+ P+  TY  LI GL          + +A     ++  +G+R
Sbjct: 600 TGKVNDALKFLQDMIHRGLTPDIVTYNSLINGLCKMGH-----VQEASNLFNKLQSEGIR 654

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           P+A TY  +          ++A  LL +    GF+P+E
Sbjct: 655 PDAITYNTLISRHCHEGMFNDACLLLYKGVDSGFIPNE 692



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 68/159 (42%), Gaps = 13/159 (8%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +   M   G   N+V    +  AL ++    EALQL   +      PDV     VI    
Sbjct: 227 LLRDMAKHGCVPNSVIYQTLIHALCENNRVSEALQLLEDMFLMCCEPDVQTFNDVIHGLC 286

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG+  EA ++  RML  G + +A TY  L+ GL          + +A+     ++ K  
Sbjct: 287 RAGRIHEAAKLLDRMLLRGFSTDALTYGYLMHGLCRMGQ-----VDEARA----LLNKIP 337

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLL-QQMKAKGFVPD 231
            PN   Y  +   +V + + +EA+ LL   M   G+ PD
Sbjct: 338 NPNTVLYNTLISGYVASGRFEEAKDLLYNNMVIAGYEPD 376



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 76/174 (43%), Gaps = 9/174 (5%)

Query: 70  DPRNLQEIFHKMRTEGLT---NNAVKMFDALSKDGLTHEALQLFAQIKDKGHM-PDVVAH 125
           D + ++++  +M+ EGL    +  + +     K GL  +A +L   +       P   ++
Sbjct: 114 DFKVIEKLLKQMKDEGLLFKESLFILIMKHYGKAGLPGQATRLLLDMWGVYSCDPTFKSY 173

Query: 126 TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185
             V++        + A  VF  ML+ GV+P  YT+ V++K L   ++ ++     A   L
Sbjct: 174 NVVLDILVDGDCPRVAPNVFYDMLSRGVSPTVYTFGVVMKALCMVSEVDS-----ACSLL 228

Query: 186 MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
            +M   G  PN+  Y  +  A     +V EA  LL+ M      PD +   + +
Sbjct: 229 RDMAKHGCVPNSVIYQTLIHALCENNRVSEALQLLEDMFLMCCEPDVQTFNDVI 282



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/136 (23%), Positives = 63/136 (46%), Gaps = 8/136 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M  +G+    +    +   L + G  ++AL+    +  +G  PD+V + ++I    
Sbjct: 574 LFEEMLGKGIFPTIISCNILISGLCRTGKVNDALKFLQDMIHRGLTPDIVTYNSLINGLC 633

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G  +EA  +F ++ + G+ P+A TY  LI     +   +  +  DA   L + V  G 
Sbjct: 634 KMGHVQEASNLFNKLQSEGIRPDAITYNTLI-----SRHCHEGMFNDACLLLYKGVDSGF 688

Query: 194 RPNAGTYTAVFEAFVR 209
            PN  T++ +    V+
Sbjct: 689 IPNEVTWSILINYIVK 704



 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 50/123 (40%), Gaps = 5/123 (4%)

Query: 109 LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
           L+  +   G+ PD      +I+     G    AL +   M+A    PN  TY +LI G  
Sbjct: 364 LYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFC 423

Query: 169 AAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
                    L +A + +  M  KG+  N   Y  +  A  +   ++EA  L  +M  KG 
Sbjct: 424 KQGR-----LEEAAEIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKGC 478

Query: 229 VPD 231
            PD
Sbjct: 479 KPD 481



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 7/95 (7%)

Query: 74  LQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           LQ++ H+    GLT + V    + + L K G   EA  LF +++ +G  PD + +  +I 
Sbjct: 610 LQDMIHR----GLTPDIVTYNSLINGLCKMGHVQEASNLFNKLQSEGIRPDAITYNTLIS 665

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
            +   G   +A  +  + + SG  PN  T+++LI 
Sbjct: 666 RHCHEGMFNDACLLLYKGVDSGFIPNEVTWSILIN 700


>gi|296083214|emb|CBI22850.3| unnamed protein product [Vitis vinifera]
          Length = 724

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 75/149 (50%), Gaps = 6/149 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + + K+    EA QL  ++ +KG  P+V+++T +I A + AG  + +L V  +M A G
Sbjct: 252 LINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIINALSDAGNVELSLAVLAKMFARG 311

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            +PN +T+  LIKG       +     +A  +   M+ +G+ PN   Y A+       + 
Sbjct: 312 CSPNLHTFTSLIKGFFLKGGSH-----EALDFWDRMIREGVVPNVVAYNALMHGLCSKRS 366

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALID 241
           + +A  +  QM+  G  P+ +    ALID
Sbjct: 367 LGDAVSVFNQMEINGCCPNVRTYS-ALID 394



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 10/159 (6%)

Query: 77  IFHKMRTEGLTNNAVKMFDALSK----DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +  KM   G + N +  F +L K     G +HEAL  + ++  +G +P+VVA+ A++   
Sbjct: 303 VLAKMFARGCSPN-LHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGL 361

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
            S     +A+ VF +M  +G  PN  TY+ LI G A A D     L  A +    M+  G
Sbjct: 362 CSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGD-----LDGASEVWNWMITHG 416

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             PN   YT + +   R    ++A  L++ M+ +   P+
Sbjct: 417 CHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPN 455



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 91/200 (45%), Gaps = 16/200 (8%)

Query: 38  SSDQPTKKYVNTKS-KLPPPYDPFKKVVDEEPTDPR--NLQEIFHKMRTEGLTNNAVK-- 92
           SS+Q  K +   +  ++ P    +  ++D    + R   +  I+  M+ +G+  N     
Sbjct: 126 SSEQALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQMINPIYSNMKKDGMEPNVFTYN 185

Query: 93  -MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
            +  AL K+     A +L  ++  KG  PD V++T +I +    G+ KEA     R LA 
Sbjct: 186 ILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLGKVKEA-----RELAM 240

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
              P+   Y  LI G+            +A + L EM+ KG+ PN  +YT +  A   A 
Sbjct: 241 SFTPSVPVYNALINGVC-----KEYTFEEAFQLLDEMMNKGIDPNVISYTTIINALSDAG 295

Query: 212 KVDEARGLLQQMKAKGFVPD 231
            V+ +  +L +M A+G  P+
Sbjct: 296 NVELSLAVLAKMFARGCSPN 315



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 96/204 (47%), Gaps = 19/204 (9%)

Query: 44  KKYVNTKS--KLPPPYDP-FKKVVDEEPTDPRNLQEIFHKMRTEGLTNNA---VKMFDAL 97
           K   N+KS    P  Y    +K+  E   D   +Q +  +M+ EG++ +    + +  + 
Sbjct: 64  KSIANSKSFKHTPLTYQMMIEKLASEREMDC--VQYLLQQMKLEGISCSEDLFISVIGSY 121

Query: 98  SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA 157
            + G + +AL+ F +++D    P V  +  +++A     + +    ++  M   G+ PN 
Sbjct: 122 RRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQMINPIYSNMKKDGMEPNV 181

Query: 158 YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
           +TY +L+K L      N ++ G A K L+EM  KG  P+  +YT +  +  +  KV EAR
Sbjct: 182 FTYNILLKALCK----NNRVDG-AHKLLVEMSSKGCDPDEVSYTTLISSLCKLGKVKEAR 236

Query: 218 GLLQQMKAKGFVPDEKAVKEALID 241
            L     A  F P    V  ALI+
Sbjct: 237 EL-----AMSFTP-SVPVYNALIN 254



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 83/181 (45%), Gaps = 11/181 (6%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+++ M T G   N V    M D L ++ + ++A  L   ++ +   P+ V     I+  
Sbjct: 407 EVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGL 466

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             +G+   A++VF +M  SG  PN  TY  L+  L        +  G+A   + +M  +G
Sbjct: 467 CGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLL-----KDRRFGEAFGLVKDMEHRG 521

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVIN 252
           +  N  TY  +   +  A  + EA  LL +M  +G  PD   V   +ID   +  +G +N
Sbjct: 522 IELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVN-IVIDAYCK--QGKVN 578

Query: 253 I 253
           I
Sbjct: 579 I 579



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 68/155 (43%), Gaps = 8/155 (5%)

Query: 77  IFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F++M   G   N      + D  +K G    A +++  +   G  P+VVA+T +++   
Sbjct: 373 VFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLC 432

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
                 +A  +   M      PN  T+   IKGL  +   +  I     K   +M   G 
Sbjct: 433 RNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAI-----KVFDQMGNSGC 487

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
            PN  TY  + ++ ++ ++  EA GL++ M+ +G 
Sbjct: 488 FPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGI 522



 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 10/168 (5%)

Query: 76  EIFHKMRTEGLTNNAVK----MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + + +M  EG+  N V     M    SK  L  +A+ +F Q++  G  P+V  ++A+I+ 
Sbjct: 337 DFWDRMIREGVVPNVVAYNALMHGLCSKRSLG-DAVSVFNQMEINGCCPNVRTYSALIDG 395

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           YA AG    A  V+  M+  G  PN   Y  ++  L   +     +   A   +  M  +
Sbjct: 396 YAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNS-----MFNQAYCLIENMQVE 450

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
              PN  T+    +    + +VD A  +  QM   G  P+     E L
Sbjct: 451 NCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELL 498



 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 10/160 (6%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F +M   G   N     ++ D+L KD    EA  L   ++ +G   ++V +  +I  Y
Sbjct: 477 KVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGY 536

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             AG   EAL +  +M+  G  P+A T  ++I         N  I       LM+ +  G
Sbjct: 537 CCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAI------QLMDRLSAG 590

Query: 193 -MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              P+   YT++         V+EA   L++M ++G  P+
Sbjct: 591 KWHPDIIAYTSLISGICTHIGVEEAIVYLRRMLSEGISPN 630



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 3/95 (3%)

Query: 76  EIFHKMRTEGLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+  KM   G   +A+ +    DA  K G  + A+QL  ++      PD++A+T++I   
Sbjct: 547 ELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMDRLSAGKWHPDIIAYTSLISGI 606

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
            +    +EA+    RML+ G++PN  T+ VL++ L
Sbjct: 607 CTHIGVEEAIVYLRRMLSEGISPNVATWNVLVRHL 641



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 5/103 (4%)

Query: 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
           G+  EAL+L  ++  +G  PD +    VI+AY   G+   A+++  R+ A    P+   Y
Sbjct: 540 GMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMDRLSAGKWHPDIIAY 599

Query: 161 AVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAV 203
             LI G+          + +A  YL  M+ +G+ PN  T+  +
Sbjct: 600 TSLISGICTHIG-----VEEAIVYLRRMLSEGISPNVATWNVL 637


>gi|225452994|ref|XP_002263091.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 588

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 76/158 (48%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +FH+M   G   + V    + D L K+    +A+ L   I+     PD+  +T +++   
Sbjct: 407 LFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMC 466

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG+ ++A  +F  + + G+ PN +TY ++I GL         +L +A K   EM   G 
Sbjct: 467 RAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQG-----LLAEASKLFSEMNKNGC 521

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            PN  TY  +   F+R  +      LL++M A+GF  D
Sbjct: 522 SPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVD 559



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 79/181 (43%), Gaps = 11/181 (6%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
            +F KM  EG   N V    + + L K G T  A++L   ++     P+VV  + +I++ 
Sbjct: 161 HLFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSL 220

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               Q  EA  +F  M+  G++PN  TY  LI GL    +            + EMV   
Sbjct: 221 CKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWK-----HVTTLMNEMVDSK 275

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVIN 252
           + P+  T   V +A  +   V EA  ++  M  +G  P+      AL+D  G   R  ++
Sbjct: 276 IMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPN-VVTYNALMD--GHCLRNEVD 332

Query: 253 I 253
           +
Sbjct: 333 V 333



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 5/126 (3%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A    A+I   GH PD    T +I      G+  EAL +F +M+  G  PN  TY  LI 
Sbjct: 124 AFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLIN 183

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           GL    + +A I     + L  M     +PN   ++ + ++  + ++V EA  +  +M  
Sbjct: 184 GLCKVGNTSAAI-----RLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMIT 238

Query: 226 KGFVPD 231
           KG  P+
Sbjct: 239 KGISPN 244



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 86/214 (40%), Gaps = 19/214 (8%)

Query: 21  RITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKKVVDEEPTDPRNLQEIFHK 80
           ++ NT     L RS+   + QP     +T        D   K  D + T+  N   IF +
Sbjct: 187 KVGNTSAAIRLLRSMEQGNCQPNVVVFSTL------IDSLCK--DRQVTEAFN---IFSE 235

Query: 81  MRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ 137
           M T+G++ N V    +   L K         L  ++ D   MPDV     V++A    G 
Sbjct: 236 MITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGM 295

Query: 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA 197
             EA  V   M+  GV PN  TY  L+ G     + +      A K    MV K    N 
Sbjct: 296 VAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDV-----AVKVFDTMVHKDCVANV 350

Query: 198 GTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +Y  +   + + Q VD+A  L ++M  +   P+
Sbjct: 351 ISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPN 384



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 7/138 (5%)

Query: 95  DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           DAL K+G+  EA  +   +  +G  P+VV + A+++ +    +   A++VF  M+     
Sbjct: 288 DALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCV 347

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLM-EMVGKGMRPNAGTYTAVFEAFVRAQKV 213
            N  +Y  LI G             D   YL  EM  + + PN  TY  +        ++
Sbjct: 348 ANVISYNTLINGYCKIQS------VDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRL 401

Query: 214 DEARGLLQQMKAKGFVPD 231
            +A  L  +M A+G +PD
Sbjct: 402 QDAISLFHEMVARGQIPD 419



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 5/136 (3%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L  +G   EAL LF ++  +G  P+VV +  +I      G    A+R+   M      P
Sbjct: 149 GLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQP 208

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           N   ++ LI  L        + + +A     EM+ KG+ PN  TY ++     +  +   
Sbjct: 209 NVVVFSTLIDSLC-----KDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKH 263

Query: 216 ARGLLQQMKAKGFVPD 231
              L+ +M     +PD
Sbjct: 264 VTTLMNEMVDSKIMPD 279



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 69/159 (43%), Gaps = 8/159 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M  + LT N V    +   L   G   +A+ LF ++  +G +PD+V +  + +   
Sbjct: 372 LFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLC 431

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
                 +A+ +   +  S   P+   Y  ++ G+  A +     L DA+     +  KG+
Sbjct: 432 KNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGE-----LEDARDLFSNLSSKGL 486

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           +PN  TY  +     +   + EA  L  +M   G  P++
Sbjct: 487 QPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPND 525



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 5/126 (3%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A+++F  +  K  + +V+++  +I  Y       +A+ +F  M    + PN  TY  LI 
Sbjct: 334 AVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIH 393

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           GL          L DA     EMV +G  P+  TY  + +   + + +D+A  LL+ ++ 
Sbjct: 394 GLCHVGR-----LQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEG 448

Query: 226 KGFVPD 231
             + PD
Sbjct: 449 SNWDPD 454



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 62/150 (41%), Gaps = 6/150 (4%)

Query: 92  KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
           ++  +++K       L L  Q+   G  PDV     VI +     +   A     ++L  
Sbjct: 75  RLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVINSLCHLNRVDFAFSALAKILKL 134

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           G  P+A T+  LI+GL          +G+A     +M+G+G +PN  TY  +     +  
Sbjct: 135 GHQPDATTFTTLIRGLCVEGK-----IGEALHLFDKMIGEGFQPNVVTYGTLINGLCKVG 189

Query: 212 KVDEARGLLQQMKAKGFVPDEKAVKEALID 241
               A  LL+ M+     P+   V   LID
Sbjct: 190 NTSAAIRLLRSMEQGNCQPN-VVVFSTLID 218


>gi|297721877|ref|NP_001173302.1| Os03g0201300 [Oryza sativa Japonica Group]
 gi|108706707|gb|ABF94502.1| salt-inducible protein, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674288|dbj|BAH92030.1| Os03g0201300 [Oryza sativa Japonica Group]
          Length = 796

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 73/140 (52%), Gaps = 5/140 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DA  K   + +AL+L  +++DKG  P +V H  V+++    G+ +EAL    ++   G
Sbjct: 355 LVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEG 414

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +AP+  TY  LI     A  GN   +  A   + EMVGKG++ +  T   V     + ++
Sbjct: 415 LAPDVITYNTLIDAYCKA--GN---VAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKR 469

Query: 213 VDEARGLLQQMKAKGFVPDE 232
            ++A  LL     +GFVPDE
Sbjct: 470 YEDAEELLHSPPQRGFVPDE 489



 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 106/262 (40%), Gaps = 40/262 (15%)

Query: 10  LLHSPSPKRSLRITNTRVNATLQRSLSSSSDQPTKKYVNTKS----KLPPPYDPFKKVVD 65
           LLHS   +R +R +    NA L     S S  P       +S    +L P +  F  +V 
Sbjct: 157 LLHSLRRRRGVRPSLQAANAVLSALSRSPSTLPQASLDVFRSLIELRLHPNHYTFNLLVH 216

Query: 66  EEPTDPR--NLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMP 120
              +     +       M+  GL+ +AV    + +A  + G+  EA  L A++K  G  P
Sbjct: 217 THCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAP 276

Query: 121 DVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAA---------- 170
               +  ++ A+A  G  K+A +V   M A G  P+  TY VL  GL  A          
Sbjct: 277 TQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAVGLCQAGKVDEAFRLK 336

Query: 171 ---------------------ADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
                                A    +   DA + L EM  KG++P   T+  V ++  +
Sbjct: 337 DEMERLSTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCK 396

Query: 210 AQKVDEARGLLQQMKAKGFVPD 231
             K++EA G L+++  +G  PD
Sbjct: 397 EGKLEEALGKLEKIAEEGLAPD 418



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 5/127 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +A +L      +G +PD V++  V+ AY      + ALR++ +M+   + P+  TY  LI
Sbjct: 472 DAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLI 531

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           KGL        + L +A   L E+V KG+ P+  TY  +  A+ +   ++ A     +M 
Sbjct: 532 KGLC-----RMERLKEAIDKLNELVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMV 586

Query: 225 AKGFVPD 231
              F PD
Sbjct: 587 ENSFKPD 593



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 80/191 (41%), Gaps = 37/191 (19%)

Query: 77  IFHKMRTEGL-----TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +  +MR +G+     T+N V    +L K+G   EAL    +I ++G  PDV+ +  +I+A
Sbjct: 371 LLEEMRDKGVKPTLVTHNIV--VKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDA 428

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAA---ADGNAKILGDAQK----- 183
           Y  AG   +A  +   M+  G+  + +T   ++  L       D    +    Q+     
Sbjct: 429 YCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPD 488

Query: 184 ----------YLME------------MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221
                     Y  E            M+ + + P+  TY  + +   R +++ EA   L 
Sbjct: 489 EVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLN 548

Query: 222 QMKAKGFVPDE 232
           ++  KG VPDE
Sbjct: 549 ELVEKGLVPDE 559



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 5/127 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA+    ++ +KG +PD   +  +I AY   G  + A R   +M+ +   P+  T   L+
Sbjct: 542 EAIDKLNELVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLM 601

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            GL          L  A K     V KG + +  TY  + ++  +   VD A      M+
Sbjct: 602 NGLCLHGK-----LDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDME 656

Query: 225 AKGFVPD 231
            KG  PD
Sbjct: 657 VKGLQPD 663



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 8/134 (5%)

Query: 102 LTHEALQLFAQIKDK-GHMPDVVAHTAVIEAYASAGQG--KEALRVFMRMLASGVAPNAY 158
           L H A QL   ++ + G  P + A  AV+ A + +     + +L VF  ++   + PN Y
Sbjct: 150 LPHLAAQLLHSLRRRRGVRPSLQAANAVLSALSRSPSTLPQASLDVFRSLIELRLHPNHY 209

Query: 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218
           T+ +L+    +        L DA   L  M G G+ P+A TY  +  A  R   + EAR 
Sbjct: 210 TFNLLVHTHCSKG-----TLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARA 264

Query: 219 LLQQMKAKGFVPDE 232
           LL +MK  G  P +
Sbjct: 265 LLARMKRDGIAPTQ 278



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 60/135 (44%), Gaps = 5/135 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +  A  K+G    A +   ++ +    PDVV    ++      G+  +AL++F   +  G
Sbjct: 565 IIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKG 624

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
              +  TY  LI+ +    D +      A  +  +M  KG++P+A TY  V  A   A +
Sbjct: 625 KKVDVITYNTLIQSMCKVGDVDT-----ALHFFDDMEVKGLQPDAFTYNVVLSALSEAGR 679

Query: 213 VDEARGLLQQMKAKG 227
            +EA  +L ++   G
Sbjct: 680 SEEAHNMLHKLADSG 694



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 64/133 (48%), Gaps = 6/133 (4%)

Query: 97  LSKDGLTHEALQLFAQIKD-KGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
           L + G   EA +L  +++     +PDVV +  +++A        +ALR+   M   GV P
Sbjct: 323 LCQAGKVDEAFRLKDEMERLSTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKP 382

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
              T+ +++K L          L +A   L ++  +G+ P+  TY  + +A+ +A  V +
Sbjct: 383 TLVTHNIVVKSLCKEGK-----LEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAK 437

Query: 216 ARGLLQQMKAKGF 228
           A  L+ +M  KG 
Sbjct: 438 AFTLMDEMVGKGL 450



 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 34/151 (22%), Positives = 58/151 (38%), Gaps = 31/151 (20%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +  ++ K G    AL  F  ++ KG  PD   +  V+ A + AG+ +EA  +  ++  SG
Sbjct: 635 LIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEEAHNMLHKLADSG 694

Query: 153 VAPNAYTYAVLIKGLAAAAD-------------------------------GNAKILGDA 181
               ++   +L    A  AD                                    L +A
Sbjct: 695 KLSQSFACPLLKPSSADEADVKEHEGKPEAESSEKAQDNALETYMERLNGLCTGGQLKEA 754

Query: 182 QKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +  L EM+ KGM  ++ TY  + E  ++ QK
Sbjct: 755 KAVLDEMMQKGMPVDSSTYITLMEGLIKRQK 785


>gi|356507117|ref|XP_003522317.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g61400-like [Glycine max]
          Length = 498

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 77/169 (45%), Gaps = 18/169 (10%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+  +M  E +  N +    + D     G    A+ L+ ++  KG +PDVV +TA+I+ +
Sbjct: 261 EVCSQMTEEXIEPNVITFSILIDGFCNKGNVRAAMGLYTEMVIKGIVPDVVTYTALIDGH 320

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G  KEA R+   ML +G++PN +T + +I GL    DG      DA K  +E  G G
Sbjct: 321 CKVGNTKEAFRLHKEMLDAGLSPNMFTVSCVIDGL--LKDGRTN---DAIKMFLEKTGAG 375

Query: 193 ----------MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
                       PN+  Y  + +       + +A     +MK  GF PD
Sbjct: 376 YPGDKMDSRFCSPNSMMYAILIQGLCEDGXIFKATKFFAEMKWNGFKPD 424



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 69/138 (50%), Gaps = 5/138 (3%)

Query: 95  DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           D   K G   +A+++ +Q+ ++   P+V+  + +I+ + + G  + A+ ++  M+  G+ 
Sbjct: 248 DGCCKIGDMEKAIEVCSQMTEEXIEPNVITFSILIDGFCNKGNVRAAMGLYTEMVIKGIV 307

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
           P+  TY  LI G      GN K   +A +   EM+  G+ PN  T + V +  ++  + +
Sbjct: 308 PDVVTYTALIDGHCKV--GNTK---EAFRLHKEMLDAGLSPNMFTVSCVIDGLLKDGRTN 362

Query: 215 EARGLLQQMKAKGFVPDE 232
           +A  +  +    G+  D+
Sbjct: 363 DAIKMFLEKTGAGYPGDK 380



 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 62/151 (41%), Gaps = 9/151 (5%)

Query: 77  IFHKMRTEGLTNNAV----KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +F +MR  G+    +     + D  S  G       L+  +   G  PDVV    +I+  
Sbjct: 86  VFGRMRESGVVTPNLYTYKTLMDGYSMMGDVKRVFYLYCDMLKPGLYPDVVTFATLIDVL 145

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G  K A   F  M    V PN + Y  LI G   A D     L +A    +EM   G
Sbjct: 146 RKMGDLKAAXNCFAYMAKFDVVPNGHAYNSLIHGYCKAGD-----LLEAMWLRLEMERCG 200

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           +  +  TY  + +      +++EA GL+++M
Sbjct: 201 IFSDVVTYNILIKGLCDICRLEEAMGLMEKM 231



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 68/147 (46%), Gaps = 12/147 (8%)

Query: 98  SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA 157
            K G   EA+ L  +++  G   DVV +  +I+      + +EA+ +  +M    V  N+
Sbjct: 181 CKAGDLLEAMWLRLEMERCGIFSDVVTYNILIKGLCDICRLEEAMGLMEKMDEVEVFANS 240

Query: 158 YTYAVLIKGLAAAADGNAKILGDAQKYL---MEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
             + V+I       DG  KI GD +K +    +M  + + PN  T++ + + F     V 
Sbjct: 241 VXFNVVI-------DGCCKI-GDMEKAIEVCSQMTEEXIEPNVITFSILIDGFCNKGNVR 292

Query: 215 EARGLLQQMKAKGFVPDEKAVKEALID 241
            A GL  +M  KG VPD      ALID
Sbjct: 293 AAMGLYTEMVIKGIVPD-VVTYTALID 318



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 62/137 (45%), Gaps = 6/137 (4%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA+ L  ++ +     + V    VI+     G  ++A+ V  +M    + PN  T+++LI
Sbjct: 223 EAMGLMEKMDEVEVFANSVXFNVVIDGCCKIGDMEKAIEVCSQMTEEXIEPNVITFSILI 282

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            G      GN +    A     EMV KG+ P+  TYTA+ +   +     EA  L ++M 
Sbjct: 283 DGFCNK--GNVRA---AMGLYTEMVIKGIVPDVVTYTALIDGHCKVGNTKEAFRLHKEML 337

Query: 225 AKGFVPDEKAVKEALID 241
             G  P+   V   +ID
Sbjct: 338 DAGLSPNMFTVS-CVID 353



 Score = 43.5 bits (101), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 2/95 (2%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L +DG   +A + FA++K  G  PD++ +  +++A+  +    + + +   M+  G
Sbjct: 396 LIQGLCEDGXIFKATKFFAEMKWNGFKPDMLVYVTMLQAHFQSKHMIDVMMLHADMVKMG 455

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           V  N + Y VL +G     +G  K      +YLME
Sbjct: 456 VIQNTFIYRVLSRGY--RENGYLKSALMCSEYLME 488



 Score = 40.4 bits (93), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 15/123 (12%)

Query: 119 MPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKIL 178
           MP +    A++              V++ M++   +P   TY +L+    A  D      
Sbjct: 1   MPTLQPCNALLHGLVKTQMFDSLWEVYVDMMSRRFSPTVITYGILMNCCCAQGD-----F 55

Query: 179 GDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEA 238
            +AQK   EM+ +G+ PN   Y           ++ EA G+  +M+  G V       + 
Sbjct: 56  SNAQKVFDEMLERGIEPNVVIY----------GQMGEAEGVFGRMRESGVVTPNLYTYKT 105

Query: 239 LID 241
           L+D
Sbjct: 106 LMD 108


>gi|410109909|gb|AFV61034.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           viburnoides]
          Length = 431

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 109/237 (45%), Gaps = 15/237 (6%)

Query: 2   AATAILRWLLHSPSPKRS-LRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPF 60
           +A+A+   +  +   +RS J + +  + A L+      + +  +  +  + K   P+D  
Sbjct: 53  SASAVFAAIXETXGTQRSDJYVFSGLITAYLESGFLRDAIECYR--LTXEHKFWVPFDTC 110

Query: 61  KKVVDEEPTDPRNLQEI--FHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIK 114
           +KV+ E     +  + +  F++   E     ++  F+ L     KDG    A  +F  I 
Sbjct: 111 RKVL-EHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAIT 169

Query: 115 DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174
             G  P VV++  ++  Y   G   E  R+   MLASGV P+ YTY+VLI G    +  +
Sbjct: 170 KWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKESKXD 229

Query: 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
                DA +   EM+ KG+ PN   +T + +   +  +VD A  + +QM ++   PD
Sbjct: 230 -----DANELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 281



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 84/198 (42%), Gaps = 35/198 (17%)

Query: 66  EEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDV 122
           E   D  N  E+F +M  +GL  N V    + D   K+G    A++++ Q+  +   PD+
Sbjct: 225 ESKXDDAN--ELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDL 282

Query: 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN-------- 174
           + +  +I      G  K+A  +   M   G+ P+  TY  LI G     D +        
Sbjct: 283 ITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITYTTLIDGCCKEGDLDXAFEHXKR 342

Query: 175 --------------AKILG--------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
                         A I G        DA+K L EM+  G++P+A TYT +   F +   
Sbjct: 343 MIQENXRLDXVXYTALISGLCXEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGD 402

Query: 213 VDEARGLLQQMKAKGFVP 230
           V +   LL++M+  G VP
Sbjct: 403 VWKGSKLLKEMQRDGHVP 420


>gi|356536414|ref|XP_003536733.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g59040-like [Glycine max]
          Length = 553

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 72/142 (50%), Gaps = 5/142 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DA S  G+  +A  +F  ++   + PD+ ++T ++ AY +A   + A + F R++   
Sbjct: 351 LLDAFSISGMVEQAQTVFKSMRRDRYFPDLCSYTTMLSAYVNADDMEGAEKFFKRLIQDD 410

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN  TY  LIKG A   D     L    K   EM+ +G++ N    T + +A+ ++  
Sbjct: 411 FEPNVVTYGTLIKGYAKIND-----LEMVMKKYEEMLVRGIKANQTILTTIMDAYGKSGD 465

Query: 213 VDEARGLLQQMKAKGFVPDEKA 234
            D A    ++M++ G  PD+KA
Sbjct: 466 FDSAVHWFKEMESNGIPPDQKA 487



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 68/154 (44%), Gaps = 5/154 (3%)

Query: 78  FHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ 137
           F  M   G+    V     +S +    E   ++ Q++     PDVV++  ++ AY  A +
Sbjct: 266 FALMAERGIQQTTVTYNSLMSFETDYKEVSNIYDQMQRADLRPDVVSYALLVSAYGKARR 325

Query: 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA 197
            +EAL VF  ML +GV P    Y +L+   + +      ++  AQ     M      P+ 
Sbjct: 326 EEEALAVFEEMLDAGVRPTRKAYNILLDAFSISG-----MVEQAQTVFKSMRRDRYFPDL 380

Query: 198 GTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +YT +  A+V A  ++ A    +++    F P+
Sbjct: 381 CSYTTMLSAYVNADDMEGAEKFFKRLIQDDFEPN 414



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 74/160 (46%), Gaps = 14/160 (8%)

Query: 76  EIFHKMRTEGLTN----NAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           EI   +RT+   +    +   +  A  K G  + A ++   +   G++P+VV+ TA++EA
Sbjct: 120 EILDWLRTQNWWDFGKMDFFMLITAYGKLGDFNGAEKVLGLMNKNGYVPNVVSQTALMEA 179

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN----AKILGDAQKYLME 187
           Y   G+   A  +F RM   G  P+A+TY +++K       GN    A+ L D    L+ 
Sbjct: 180 YGKGGRYNNAEAIFRRMQKWGPEPSAFTYQIILKTF---VQGNKYREAEELFDN---LLN 233

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
                ++P+   +  +   + +A   ++AR     M  +G
Sbjct: 234 DENSPLKPDQKMFNMMIYMYKKAGSYEKARKTFALMAERG 273


>gi|356530296|ref|XP_003533718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g18940-like [Glycine max]
          Length = 830

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 5/132 (3%)

Query: 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
           G   E + +   +  KG MP+ + +T VI+AY  AG+  +ALR+F +M   G APN YTY
Sbjct: 371 GFLDEGMAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSKMKDLGCAPNVYTY 430

Query: 161 AVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
             ++  L     G      D  K L EM   G  PN  T+  +        K +    +L
Sbjct: 431 NSVLAML-----GKKSRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVL 485

Query: 221 QQMKAKGFVPDE 232
           ++MK  GF PD+
Sbjct: 486 REMKNCGFEPDK 497



 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 80/159 (50%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNN---AVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+  +MR++GL  +      +  A  ++G+  EA +  A++K  G+ P  V + ++++ +
Sbjct: 273 ELLDEMRSKGLEFDEFTCSTVISACGREGMLDEARKFLAELKLNGYKPGTVMYNSMLQVF 332

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             AG   EAL +   M  +   P++ TY  L     AA    A  L +    +  M  KG
Sbjct: 333 GKAGIYTEALSILKEMEDNNCPPDSITYNEL-----AATYVRAGFLDEGMAVIDTMTSKG 387

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + PNA TYT V +A+ +A + D+A  L  +MK  G  P+
Sbjct: 388 VMPNAITYTTVIDAYGKAGREDDALRLFSKMKDLGCAPN 426



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 77/165 (46%), Gaps = 8/165 (4%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+ H +   GL  N      + D   ++    +A ++   I++    PDVV++  VI+ 
Sbjct: 657 REMLHFIHECGLQPNLFTYNCLMDLYVREDECWKAEEVLKGIQNSVPEPDVVSYNTVIKG 716

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +   G  +EA+RV   M   G+ P   TY   + G A       ++  +A + +  M+  
Sbjct: 717 FCRKGLMQEAIRVLSEMTTKGIQPTIVTYNTFLSGYAG-----MELFDEANEVIRFMIEH 771

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK 236
             RP+  TY  + + + +A K +EA   + ++K      D+K+VK
Sbjct: 772 NCRPSELTYKILVDGYCKAGKHEEAMDFVTKIKEIDISFDDKSVK 816



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 80/191 (41%), Gaps = 33/191 (17%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +   M ++G+  NA+    + DA  K G   +AL+LF+++KD G  P+V  + +V+    
Sbjct: 379 VIDTMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSKMKDLGCAPNVYTYNSVLAMLG 438

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNA--KILG------------ 179
              + ++ ++V   M  +G APN  T+  ++   +     N   K+L             
Sbjct: 439 KKSRTEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKD 498

Query: 180 ----------------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
                           D+ K   EMV  G  P   TY A+  A         A  ++Q M
Sbjct: 499 TFNTLISSYARCGSEVDSAKMYGEMVKSGFTPCVTTYNALLNALAHRGDWKAAESVIQDM 558

Query: 224 KAKGFVPDEKA 234
           + KGF P+E +
Sbjct: 559 QTKGFKPNETS 569



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 66/160 (41%), Gaps = 5/160 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M     K G+  EAL +  +++D    PD + +  +   Y  AG   E + V   M + G
Sbjct: 328 MLQVFGKAGIYTEALSILKEMEDNNCPPDSITYNELAATYVRAGFLDEGMAVIDTMTSKG 387

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V PNA TY  +I      A G A    DA +   +M   G  PN  TY +V     +  +
Sbjct: 388 VMPNAITYTTVID-----AYGKAGREDDALRLFSKMKDLGCAPNVYTYNSVLAMLGKKSR 442

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVIN 252
            ++   +L +MK  G  P+       L     +G    +N
Sbjct: 443 TEDVIKVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVN 482



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 71/146 (48%), Gaps = 5/146 (3%)

Query: 86  LTNNAVK-MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRV 144
           L N  V+ M   L ++     A +LF  I  + +  DV A+T ++ AYA +G+ K A+ +
Sbjct: 179 LDNQVVELMVRILGRESQHSIASKLFDLIPVEKYSLDVRAYTTILHAYARSGKYKRAIDL 238

Query: 145 FMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVF 204
           F +M   G+ P   TY V++           +IL    + L EM  KG+  +  T + V 
Sbjct: 239 FDKMEGIGLDPTLVTYNVMLDVYGKMGRSWGRIL----ELLDEMRSKGLEFDEFTCSTVI 294

Query: 205 EAFVRAQKVDEARGLLQQMKAKGFVP 230
            A  R   +DEAR  L ++K  G+ P
Sbjct: 295 SACGREGMLDEARKFLAELKLNGYKP 320



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 64/141 (45%), Gaps = 8/141 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++  +M+  G   N      M    S++G  +   ++  ++K+ G  PD      +I +Y
Sbjct: 448 KVLCEMKLNGCAPNRATWNTMLAVCSEEGKHNYVNKVLREMKNCGFEPDKDTFNTLISSY 507

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           A  G   ++ +++  M+ SG  P   TY  L+  LA   D  A     A+  + +M  KG
Sbjct: 508 ARCGSEVDSAKMYGEMVKSGFTPCVTTYNALLNALAHRGDWKA-----AESVIQDMQTKG 562

Query: 193 MRPNAGTYTAVFEAFVRAQKV 213
            +PN  +Y+ +   + +A  V
Sbjct: 563 FKPNETSYSLLLHCYSKAGNV 583



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 79/205 (38%), Gaps = 26/205 (12%)

Query: 64  VDEEPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGL-----THEA------------ 106
           V++   D R    I H     G    A+ +FD +   GL     T+              
Sbjct: 209 VEKYSLDVRAYTTILHAYARSGKYKRAIDLFDKMEGIGLDPTLVTYNVMLDVYGKMGRSW 268

Query: 107 ---LQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
              L+L  +++ KG   D    + VI A    G   EA +    +  +G  P    Y  +
Sbjct: 269 GRILELLDEMRSKGLEFDEFTCSTVISACGREGMLDEARKFLAELKLNGYKPGTVMYNSM 328

Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           ++       G A I  +A   L EM      P++ TY  +   +VRA  +DE   ++  M
Sbjct: 329 LQVF-----GKAGIYTEALSILKEMEDNNCPPDSITYNELAATYVRAGFLDEGMAVIDTM 383

Query: 224 KAKGFVPDEKAVKEALIDKRGQGFR 248
            +KG +P+       +ID  G+  R
Sbjct: 384 TSKGVMPN-AITYTTVIDAYGKAGR 407



 Score = 44.7 bits (104), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 5/121 (4%)

Query: 110 FAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169
           F Q++  G+ PD+V   +++  ++      +A  +   +   G+ PN +TY  L+  L  
Sbjct: 625 FDQLQKYGYKPDLVVINSMLSMFSRNKMFSKAREMLHFIHECGLQPNLFTYNCLMD-LYV 683

Query: 170 AADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFV 229
             D   K    A++ L  +      P+  +Y  V + F R   + EA  +L +M  KG  
Sbjct: 684 REDECWK----AEEVLKGIQNSVPEPDVVSYNTVIKGFCRKGLMQEAIRVLSEMTTKGIQ 739

Query: 230 P 230
           P
Sbjct: 740 P 740


>gi|356513567|ref|XP_003525484.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
           chloroplastic-like [Glycine max]
          Length = 857

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 75/147 (51%), Gaps = 8/147 (5%)

Query: 86  LTNNAVKMFDALSKDGLTHEAL-QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRV 144
           LT N V   +A ++ GL  E L  LFA+++ +G  PDV+ +  ++ A A  G G EA  V
Sbjct: 205 LTYNTV--INACARGGLDWEGLLGLFAEMRHEGIQPDVITYNTLLGACAHRGLGDEAEMV 262

Query: 145 FMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVF 204
           F  M  SG+ P+  TY+ L++       G    L    + L EM   G  P+  +Y  + 
Sbjct: 263 FRTMNESGIVPDINTYSYLVQTF-----GKLNRLEKVSELLREMECGGNLPDITSYNVLL 317

Query: 205 EAFVRAQKVDEARGLLQQMKAKGFVPD 231
           EA+     + EA G+ +QM+A G V +
Sbjct: 318 EAYAELGSIKEAMGVFRQMQAAGCVAN 344



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 76/173 (43%), Gaps = 9/173 (5%)

Query: 77  IFHKMRTEGLT---NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F  M   G+    N    +     K     +  +L  +++  G++PD+ ++  ++EAYA
Sbjct: 262 VFRTMNESGIVPDINTYSYLVQTFGKLNRLEKVSELLREMECGGNLPDITSYNVLLEAYA 321

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G  KEA+ VF +M A+G   NA TY+VL+        G      D +   +EM     
Sbjct: 322 ELGSIKEAMGVFRQMQAAGCVANAATYSVLLN-----LYGKHGRYDDVRDLFLEMKVSNT 376

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
            P+AGTY  + + F       E   L   M  +   P+ +   E LI   G+G
Sbjct: 377 DPDAGTYNILIQVFGEGGYFKEVVTLFHDMAEENVEPNMQTY-EGLIFACGKG 428



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 77/162 (47%), Gaps = 9/162 (5%)

Query: 74  LQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
            +E+F +M + G+         + +A  ++G  H +L+L   +K +   P ++ +  VI 
Sbjct: 153 CREVFDEMPSNGVVRTVYSYTAIINAYGRNGQFHASLELLNGMKQERVSPSILTYNTVIN 212

Query: 131 AYASAGQGKEALR-VFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
           A A  G   E L  +F  M   G+ P+  TY  L+   A    G+     +A+     M 
Sbjct: 213 ACARGGLDWEGLLGLFAEMRHEGIQPDVITYNTLLGACAHRGLGD-----EAEMVFRTMN 267

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             G+ P+  TY+ + + F +  ++++   LL++M+  G +PD
Sbjct: 268 ESGIVPDINTYSYLVQTFGKLNRLEKVSELLREMECGGNLPD 309



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 8/166 (4%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +FH M  E +  N      +  A  K GL  +A ++   + +KG +P   A+T VIEA+ 
Sbjct: 402 LFHDMAEENVEPNMQTYEGLIFACGKGGLYEDAKKILLHMNEKGVVPSSKAYTGVIEAFG 461

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            A   +EAL +F  M   G  P   TY  LI   A        +  +A+  L  M   G+
Sbjct: 462 QAALYEEALVMFNTMNEVGSNPTVETYNSLIHAFARGG-----LYKEAEAILSRMNESGL 516

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
           + +  ++  V EAF +  + +EA     +M+     P+E  ++  L
Sbjct: 517 KRDVHSFNGVIEAFRQGGQYEEAVKSYVEMEKANCEPNELTLEAVL 562



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 104/256 (40%), Gaps = 35/256 (13%)

Query: 7   LRWLLHS---PSPKRSLRITNTRVNATLQRSLSSSSDQPTKKY-------VNTKSKLPP- 55
           LR LL +   PSPKR L +        +   ++ S      KY       +N  + LPP 
Sbjct: 23  LRQLLFTNFTPSPKRRLLLQARAAKPNVLIPINPSVTVEKGKYSYDVETLINRLTALPPR 82

Query: 56  -----PYDPFKK--------VVDEEPTDPRNLQE---IFHKMRTEGLT--NNAVK--MFD 95
                  DPFK         +V +E     + Q    +F  M+ +     N  +   M  
Sbjct: 83  GSIARCLDPFKNKLSLNDFALVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIHTIMIT 142

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L ++GL  +  ++F ++   G +  V ++TA+I AY   GQ   +L +   M    V+P
Sbjct: 143 LLGREGLLDKCREVFDEMPSNGVVRTVYSYTAIINAYGRNGQFHASLELLNGMKQERVSP 202

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY  +I   A        +LG       EM  +G++P+  TY  +  A       DE
Sbjct: 203 SILTYNTVINACARGGLDWEGLLG----LFAEMRHEGIQPDVITYNTLLGACAHRGLGDE 258

Query: 216 ARGLLQQMKAKGFVPD 231
           A  + + M   G VPD
Sbjct: 259 AEMVFRTMNESGIVPD 274



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 63/138 (45%), Gaps = 5/138 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +A  +  L  EAL +F  + + G  P V  + ++I A+A  G  KEA  +  RM  SG
Sbjct: 456 VIEAFGQAALYEEALVMFNTMNEVGSNPTVETYNSLIHAFARGGLYKEAEAILSRMNESG 515

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +  + +++  +I+              +A K  +EM      PN  T  AV   +  A  
Sbjct: 516 LKRDVHSFNGVIEAFRQGGQ-----YEEAVKSYVEMEKANCEPNELTLEAVLSIYCSAGL 570

Query: 213 VDEARGLLQQMKAKGFVP 230
           VDE     Q++KA G +P
Sbjct: 571 VDEGEEQFQEIKASGILP 588



 Score = 38.5 bits (88), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 3/93 (3%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + I  +M   GL  +      + +A  + G   EA++ + +++     P+ +   AV+  
Sbjct: 505 EAILSRMNESGLKRDVHSFNGVIEAFRQGGQYEEAVKSYVEMEKANCEPNELTLEAVLSI 564

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           Y SAG   E    F  + ASG+ P+   Y +++
Sbjct: 565 YCSAGLVDEGEEQFQEIKASGILPSVMCYCMML 597


>gi|357499659|ref|XP_003620118.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
 gi|355495133|gb|AES76336.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
          Length = 841

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 45/175 (25%), Positives = 85/175 (48%), Gaps = 15/175 (8%)

Query: 62  KVVDEEPTDPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGH 118
           K+VDE         ++F +M  + +  + +    + D L K G    AL+L  ++  +G 
Sbjct: 487 KMVDEA-------MKLFKEMHHKQIFPDVITYSSLIDGLCKSGRISYALELVDEMHYRGQ 539

Query: 119 MPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKIL 178
            PD++ + ++++A        +A+ +  ++   G+ P+  TY +L+KGL  +       L
Sbjct: 540 QPDIITYNSILDALCKKHHVDKAITLLTKLKGQGIRPDMNTYTILVKGLCQSGK-----L 594

Query: 179 GDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK 233
            DA+K   +++ KG   +   YT + + F      DEA  LL +M+  G +PD K
Sbjct: 595 EDARKVFEDLLVKGYNLDVYAYTVMIQGFCDKGLFDEALALLSKMEENGCIPDAK 649



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 74/135 (54%), Gaps = 5/135 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D + KD   ++A  L+++   K   PDV  + A+I  +   G+ K+A+ +F +M +  
Sbjct: 339 IIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYNALISGFCIVGKLKDAIDLFNKMTSKN 398

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+ YT+++L+ G     DGN K   +A+  L  M+ + ++P+  TY+++ + +    +
Sbjct: 399 IIPDVYTFSILVDGF--CKDGNIK---EAKNVLAMMMKQSIKPDVVTYSSLMDGYCLVNE 453

Query: 213 VDEARGLLQQMKAKG 227
           V++A  +   M  +G
Sbjct: 454 VNKAESIFNTMSHRG 468



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 47/196 (23%), Positives = 91/196 (46%), Gaps = 24/196 (12%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F+KM ++ +  +      + D   KDG   EA  + A +  +   PDVV ++++++ Y
Sbjct: 389 DLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLMDGY 448

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               +  +A  +F  M   GV  N  +Y ++I G         K++ +A K   EM  K 
Sbjct: 449 CLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFC-----KIKMVDEAMKLFKEMHHKQ 503

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD--------EKAVKEALIDK-- 242
           + P+  TY+++ +   ++ ++  A  L+ +M  +G  PD        +   K+  +DK  
Sbjct: 504 IFPDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAI 563

Query: 243 ------RGQGFRGVIN 252
                 +GQG R  +N
Sbjct: 564 TLLTKLKGQGIRPDMN 579



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/144 (26%), Positives = 72/144 (50%), Gaps = 7/144 (4%)

Query: 86  LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVF 145
           +T N++   DAL K     +A+ L  ++K +G  PD+  +T +++    +G+ ++A +VF
Sbjct: 544 ITYNSI--LDALCKKHHVDKAITLLTKLKGQGIRPDMNTYTILVKGLCQSGKLEDARKVF 601

Query: 146 MRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFE 205
             +L  G   + Y Y V+I+G       +  +  +A   L +M   G  P+A TY  +  
Sbjct: 602 EDLLVKGYNLDVYAYTVMIQGFC-----DKGLFDEALALLSKMEENGCIPDAKTYEIIIL 656

Query: 206 AFVRAQKVDEARGLLQQMKAKGFV 229
           +     + D A  LL++M  +G +
Sbjct: 657 SLFEKDENDMAEKLLREMIMRGLL 680



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 61/139 (43%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K G T  AL+L  +   K   PDVV +  +I+         +A  ++   ++  
Sbjct: 304 LINGLCKVGETKAALELLRRNDGKLVQPDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKR 363

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+ +TY  LI G           L DA     +M  K + P+  T++ + + F +   
Sbjct: 364 IFPDVFTYNALISGFCIVGK-----LKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGN 418

Query: 213 VDEARGLLQQMKAKGFVPD 231
           + EA+ +L  M  +   PD
Sbjct: 419 IKEAKNVLAMMMKQSIKPD 437



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/120 (26%), Positives = 60/120 (50%), Gaps = 8/120 (6%)

Query: 77  IFHKMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  K++ +G+    N    +   L + G   +A ++F  +  KG+  DV A+T +I+ + 
Sbjct: 565 LLTKLKGQGIRPDMNTYTILVKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTVMIQGFC 624

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G   EAL +  +M  +G  P+A TY ++I  L    + +      A+K L EM+ +G+
Sbjct: 625 DKGLFDEALALLSKMEENGCIPDAKTYEIIILSLFEKDENDM-----AEKLLREMIMRGL 679


>gi|357498925|ref|XP_003619751.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494766|gb|AES75969.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 562

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 76/135 (56%), Gaps = 5/135 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D++ KD L ++A  L++++  K   PDV  + A+I  +   G+ K+A+ +F +M +  
Sbjct: 247 IIDSMCKDKLDNDAFDLYSEMVSKRIFPDVNTYNALINGFCIVGKLKDAIGLFNKMTSEN 306

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+ YT+ +L+   A   +G  K   +A+  L  M+ +G++P+  TY ++ + +    +
Sbjct: 307 INPDVYTFNILVD--AFCKEGRVK---EAKNGLAMMMKQGIKPDVVTYNSLMDRYCLVNE 361

Query: 213 VDEARGLLQQMKAKG 227
           V++A+ +   M  +G
Sbjct: 362 VNKAKSIFNTMSHRG 376



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 24/176 (13%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + IF+ M   G+T N      M +   K  +  +A++LF ++  K   P+V+ ++++I+ 
Sbjct: 366 KSIFNTMSHRGVTANVRSYSIMINRFCKIKMVDQAMKLFKEMHHKQIFPNVITYSSLIDG 425

Query: 132 YASAGQGKEALRV---------------FMRMLAS-GVAPNAYTYAVLIKGLAAAADGNA 175
              +G+   AL +                 R L   G+ PN +TY +LI GL        
Sbjct: 426 LCKSGRISYALELNDEMHDRGQQPDIITLTRQLKDQGIRPNMFTYTILIDGLCKGGR--- 482

Query: 176 KILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             L DA+    +++ KG      TYT +   F      DEA  LL +MK    +P+
Sbjct: 483 --LEDARNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEAMTLLSKMKDNCCIPN 536



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 81/175 (46%), Gaps = 11/175 (6%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F+KM +E +  +      + DA  K+G   EA    A +  +G  PDVV + ++++ Y 
Sbjct: 298 LFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDVVTYNSLMDRYC 357

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
              +  +A  +F  M   GV  N  +Y+++I           K++  A K   EM  K +
Sbjct: 358 LVNEVNKAKSIFNTMSHRGVTANVRSYSIMINRFCK-----IKMVDQAMKLFKEMHHKQI 412

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFR 248
            PN  TY+++ +   ++ ++  A  L  +M  +G  PD   +   L D   QG R
Sbjct: 413 FPNVITYSSLIDGLCKSGRISYALELNDEMHDRGQQPDIITLTRQLKD---QGIR 464



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 5/125 (4%)

Query: 107 LQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKG 166
           LQL  ++  K   P++V +  +I++        +A  ++  M++  + P+  TY  LI G
Sbjct: 226 LQLLRRVDGKLLQPNLVMYNTIIDSMCKDKLDNDAFDLYSEMVSKRIFPDVNTYNALING 285

Query: 167 LAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK 226
                      L DA     +M  + + P+  T+  + +AF +  +V EA+  L  M  +
Sbjct: 286 FCIVGK-----LKDAIGLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQ 340

Query: 227 GFVPD 231
           G  PD
Sbjct: 341 GIKPD 345



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 5/131 (3%)

Query: 90  AVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRML 149
           A+++ D +   G   + + L  Q+KD+G  P++  +T +I+     G+ ++A  +F  +L
Sbjct: 435 ALELNDEMHDRGQQPDIITLTRQLKDQGIRPNMFTYTILIDGLCKGGRLEDARNIFEDLL 494

Query: 150 ASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
             G      TY V+I G       N  +  +A   L +M      PNA TY  +  +   
Sbjct: 495 VKGYNITVNTYTVMIHGFC-----NKGLFDEAMTLLSKMKDNCCIPNAVTYEIIIRSLFD 549

Query: 210 AQKVDEARGLL 220
             + D+A    
Sbjct: 550 NDENDKAENFF 560


>gi|255684868|gb|ACU27923.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684870|gb|ACU27924.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684872|gb|ACU27925.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684874|gb|ACU27926.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684876|gb|ACU27927.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684878|gb|ACU27928.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684880|gb|ACU27929.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684882|gb|ACU27930.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684884|gb|ACU27931.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684886|gb|ACU27932.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684888|gb|ACU27933.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684890|gb|ACU27934.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684892|gb|ACU27935.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684894|gb|ACU27936.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684896|gb|ACU27937.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684898|gb|ACU27938.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684908|gb|ACU27943.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684910|gb|ACU27944.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684914|gb|ACU27946.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684918|gb|ACU27948.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684922|gb|ACU27950.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684930|gb|ACU27954.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684932|gb|ACU27955.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684934|gb|ACU27956.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684936|gb|ACU27957.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684938|gb|ACU27958.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684940|gb|ACU27959.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684942|gb|ACU27960.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684944|gb|ACU27961.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684946|gb|ACU27962.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684948|gb|ACU27963.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684950|gb|ACU27964.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684952|gb|ACU27965.1| At1g03560-like protein [Arabidopsis thaliana]
          Length = 193

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 72/132 (54%), Gaps = 5/132 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ D+G  PDVV ++ V+      G+ +EAL  F      G
Sbjct: 20  LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDG 79

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +A N+  Y+ LI GL     G A  + +A++   EM  KG   ++  Y A+ +AF + +K
Sbjct: 80  LAINSMFYSSLIDGL-----GKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRK 134

Query: 213 VDEARGLLQQMK 224
           VDEA  L ++M+
Sbjct: 135 VDEAIALFKRME 146



 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 27/44 (61%)

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           M+ KG +PN   YT + + + ++  V++A  LL +M  +GF PD
Sbjct: 5   MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPD 48


>gi|242089061|ref|XP_002440363.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
 gi|241945648|gb|EES18793.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
          Length = 715

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 88/181 (48%), Gaps = 10/181 (5%)

Query: 53  LPPPYDPFKKVVDEEPT--DPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEAL 107
           L P    F  ++    T  + + ++++  +M   G+  NA+    + D+L K+G   EA 
Sbjct: 361 LSPDIITFTSLIHGLCTIGEWKKVEKLSFEMINRGIHPNAIFLNTIMDSLCKEGRVLEAH 420

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
             F QI   G  PDVV++T +I+ Y   G+  E++++  RM++ G+ P+  TY+ L+ G 
Sbjct: 421 DFFDQIIHVGVKPDVVSYTILIDGYCLDGKMDESIKLLGRMVSIGLRPDNVTYSALLNGY 480

Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
                 N ++  DA     EM  K ++PNA TY  +      A +V  AR    ++   G
Sbjct: 481 CK----NGRV-DDALALYREMFSKDVKPNAITYNIILHGLFHAGRVVAAREFYMKIVDSG 535

Query: 228 F 228
            
Sbjct: 536 I 536



 Score = 73.6 bits (179), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 82/204 (40%), Gaps = 49/204 (24%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSK----------------DGLTHEALQLFAQIKDKG 117
           +FH+M  +G   N V    + D L K                 G   EA++L  ++   G
Sbjct: 161 LFHEMLGQGFPPNIVTYNSVIDGLCKAQAMDKAEAVLQQMFDKGQLEEAVRLLKKMSGGG 220

Query: 118 HMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA------ 171
             PDVV ++ +I+ Y   G+  EA  +F  M+  G  P+AYTY  L+ G A         
Sbjct: 221 LQPDVVTYSLLIDYYCKIGRCTEARNIFDSMVRRGQNPDAYTYRTLLHGYATKGALVDMH 280

Query: 172 --------DG----------------NAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAF 207
                   DG                  + L  A    +EM  KG  PN  TYT V +  
Sbjct: 281 DLLALMIQDGIPLEDHVFNILIRAYAKNETLDKAMTAFIEMRQKGFSPNVVTYTTVIDIL 340

Query: 208 VRAQKVDEARGLLQQMKAKGFVPD 231
            +A +V++A     QM ++G  PD
Sbjct: 341 CKAGRVEDAVSHFSQMVSEGLSPD 364



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 81/157 (51%), Gaps = 8/157 (5%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F +MR +G + N V    + D L K G   +A+  F+Q+  +G  PD++  T++I    +
Sbjct: 318 FIEMRQKGFSPNVVTYTTVIDILCKAGRVEDAVSHFSQMVSEGLSPDIITFTSLIHGLCT 377

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            G+ K+  ++   M+  G+ PNA     ++  L        ++L +A  +  +++  G++
Sbjct: 378 IGEWKKVEKLSFEMINRGIHPNAIFLNTIMDSLCK----EGRVL-EAHDFFDQIIHVGVK 432

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           P+  +YT + + +    K+DE+  LL +M + G  PD
Sbjct: 433 PDVVSYTILIDGYCLDGKMDESIKLLGRMVSIGLRPD 469



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 70/136 (51%), Gaps = 5/136 (3%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
           A +K+    +A+  F +++ KG  P+VV +T VI+    AG+ ++A+  F +M++ G++P
Sbjct: 304 AYAKNETLDKAMTAFIEMRQKGFSPNVVTYTTVIDILCKAGRVEDAVSHFSQMVSEGLSP 363

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  T+  LI GL    +         +K   EM+ +G+ PNA     + ++  +  +V E
Sbjct: 364 DIITFTSLIHGLCTIGEWKK-----VEKLSFEMINRGIHPNAIFLNTIMDSLCKEGRVLE 418

Query: 216 ARGLLQQMKAKGFVPD 231
           A     Q+   G  PD
Sbjct: 419 AHDFFDQIIHVGVKPD 434



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 11/123 (8%)

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL--AAAADGNAKI 177
           P+V+++  VI      G+  +A  +F  ML  G  PN  TY  +I GL  A A D    +
Sbjct: 137 PNVLSYNMVINGLFKEGEVDKAYTLFHEMLGQGFPPNIVTYNSVIDGLCKAQAMDKAEAV 196

Query: 178 LG---------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
           L          +A + L +M G G++P+  TY+ + + + +  +  EAR +   M  +G 
Sbjct: 197 LQQMFDKGQLEEAVRLLKKMSGGGLQPDVVTYSLLIDYYCKIGRCTEARNIFDSMVRRGQ 256

Query: 229 VPD 231
            PD
Sbjct: 257 NPD 259



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 73/166 (43%), Gaps = 26/166 (15%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASA----------------G 136
           + + L K+G   +A  LF ++  +G  P++V + +VI+    A                G
Sbjct: 145 VINGLFKEGEVDKAYTLFHEMLGQGFPPNIVTYNSVIDGLCKAQAMDKAEAVLQQMFDKG 204

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKI--LGDAQKYLMEMVGKGMR 194
           Q +EA+R+  +M   G+ P+  TY++LI       D   KI    +A+     MV +G  
Sbjct: 205 QLEEAVRLLKKMSGGGLQPDVVTYSLLI-------DYYCKIGRCTEARNIFDSMVRRGQN 257

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
           P+A TY  +   +     + +   LL  M   G +P E  V   LI
Sbjct: 258 PDAYTYRTLLHGYATKGALVDMHDLLALMIQDG-IPLEDHVFNILI 302



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 32/175 (18%), Positives = 79/175 (45%), Gaps = 15/175 (8%)

Query: 81  MRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140
           +R + +T +A  + +   K+G   +AL L+ ++  K   P+ + +  ++     AG+   
Sbjct: 466 LRPDNVTYSA--LLNGYCKNGRVDDALALYREMFSKDVKPNAITYNIILHGLFHAGRVVA 523

Query: 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTY 200
           A   +M+++ SG+     TY +++ GL   +      + +A +    +  K  +    T+
Sbjct: 524 AREFYMKIVDSGIQLGINTYNIVLGGLCENS-----FVDEALRMFQGLRSKEFQLEVRTF 578

Query: 201 TAVFEAFVRAQKVDEARGLLQQMKAKGFVPD--------EKAVKEALIDKRGQGF 247
             +    ++  ++ +A+ L   +   G VPD        +  ++E L+++  + F
Sbjct: 579 NIMIVGLLKVGRIGDAKSLFSAILPSGLVPDAIIYGLMIQSHIEEGLLEESDELF 633



 Score = 43.9 bits (102), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 8/128 (6%)

Query: 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
           H+ L L   I+D   + D V +  +I AYA      +A+  F+ M   G +PN  TY  +
Sbjct: 280 HDLLALM--IQDGIPLEDHVFNI-LIRAYAKNETLDKAMTAFIEMRQKGFSPNVVTYTTV 336

Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           I  L  A       + DA  +  +MV +G+ P+  T+T++        +  +   L  +M
Sbjct: 337 IDILCKAGR-----VEDAVSHFSQMVSEGLSPDIITFTSLIHGLCTIGEWKKVEKLSFEM 391

Query: 224 KAKGFVPD 231
             +G  P+
Sbjct: 392 INRGIHPN 399


>gi|225427240|ref|XP_002278451.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580,
           chloroplastic [Vitis vinifera]
          Length = 723

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 90/177 (50%), Gaps = 11/177 (6%)

Query: 74  LQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           ++E+ ++M + G+  + +    +     +  L  +A++ F ++   G MPD V ++A+++
Sbjct: 218 IEELANEMISTGVELDNITYSTIITCAKRCNLFDKAVKWFERMYKTGLMPDEVTYSAILD 277

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKY-LMEMV 189
            YA  G+ +E L ++ R  ASG  P+   +AVL K    A D       D  +Y L EM 
Sbjct: 278 VYAKLGKVEEVLSLYERGRASGWKPDPIAFAVLGKMFGEAGD------YDGIRYVLQEMK 331

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
             G++PN   Y  + EA  +A K   AR L ++M   G +PD K +  AL+   G+ 
Sbjct: 332 SLGVQPNLVVYNTLLEAMGKAGKPGLARSLFEEMVGSGVIPDAKTLT-ALVKIYGKA 387



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 87/194 (44%), Gaps = 26/194 (13%)

Query: 72  RNLQEIFHKMRTEG------LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHM-PDVVA 124
           R+  E++ +MR+ G      L N  + M   L   GL  EA +LF  +K   H  PD  +
Sbjct: 391 RDALELWERMRSNGWPMDFILYNTLLSMCADL---GLEEEAEKLFEDMKKSEHCRPDSWS 447

Query: 125 HTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKY 184
           +TA++  Y S G    A+++F  M   GV  N      L + L     G A+ + D  K 
Sbjct: 448 YTAMLNIYGSGGNVDRAMQLFDEMSELGVQINVMGCTCLSQCL-----GRARRIDDLVKV 502

Query: 185 LMEMVGKGMRPN---AGTYTAVFEAFVRAQKVDEARGLLQQMKAK--GFVP--DEKAVKE 237
               + +G++P+    G   +V      A+  ++    LQQ   K   FV   +EK   E
Sbjct: 503 FEVSLERGVKPDDRLCGCLLSVVSFCEGAEDANKVLACLQQANPKLVAFVNLLEEKISFE 562

Query: 238 ALIDKRGQGFRGVI 251
           AL ++    FRG++
Sbjct: 563 ALKEE----FRGIL 572



 Score = 46.2 bits (108), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 66/156 (42%), Gaps = 10/156 (6%)

Query: 92  KMF-DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           KMF +A   DG+ +    +  ++K  G  P++V +  ++EA   AG+   A  +F  M+ 
Sbjct: 312 KMFGEAGDYDGIRY----VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGLARSLFEEMVG 367

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
           SGV P+A T   L+K       G A+   DA +    M   G   +   Y  +       
Sbjct: 368 SGVIPDAKTLTALVK-----IYGKARWARDALELWERMRSNGWPMDFILYNTLLSMCADL 422

Query: 211 QKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
              +EA  L + MK       +     A+++  G G
Sbjct: 423 GLEEEAEKLFEDMKKSEHCRPDSWSYTAMLNIYGSG 458


>gi|326523953|dbj|BAJ96987.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1092

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 79/166 (47%), Gaps = 10/166 (6%)

Query: 70   DPRNLQEIFHKMRTEGLTNNAVKMF----DALSKDGLTHEALQLFAQIKDKGHMPDVVAH 125
            D   + E+F  M  +G+ N  +K +    D L  DG  ++ L  F Q+ D G  PD++ +
Sbjct: 921  DTEKVCELFESMVEQGM-NPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITY 979

Query: 126  TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185
              +I     +G+ +EAL ++  M   G+APN YTY  LI  L     G A    +A K  
Sbjct: 980  NLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYL-----GKAGKAAEAGKMY 1034

Query: 186  MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             E++ KG +PN  TY A+   +  +   + A     +M   G  P+
Sbjct: 1035 EELLAKGWKPNVFTYNALIRGYSVSGSPENAFAAYGRMIVGGCRPN 1080



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 95/213 (44%), Gaps = 34/213 (15%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D R++ EI++ ++ +G  +N V      DAL + G   EAL +F ++K KG +P   ++ 
Sbjct: 326 DSRSVSEIWNALKADGYNDNVVSYTAAVDALCQVGRVDEALDVFDEMKQKGIIPQQYSYN 385

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI---------------------K 165
           ++I  +  A +   AL +F  M   G  PN YT+ + I                     K
Sbjct: 386 SLISGFLKADRFNRALELFNHMNIHGPTPNGYTHVLFINYHGKSGESLKALKRYELMKSK 445

Query: 166 GLAA-AADGNAKI--------LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
           G+      GNA +        LG A++   E+   G+ P+  TYT + +   +A   DEA
Sbjct: 446 GIVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKAMGISPDNITYTMMIKCCSKASNADEA 505

Query: 217 RGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRG 249
             +  +M      PD  A+  +LID   +  RG
Sbjct: 506 MKIFAEMIENRCAPDVLAMN-SLIDMLYKAGRG 537



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 77/160 (48%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +FH+++  G++ + +    M    SK     EA+++FA++ +    PDV+A  ++I+ 
Sbjct: 471 KRVFHELKAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMIENRCAPDVLAMNSLIDM 530

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              AG+G EA ++F  +    + P   TY  L+ GL    +G  K   +  + L  M   
Sbjct: 531 LYKAGRGNEAWKIFYELKEMNLEPTDCTYNTLLAGL--GREGKVK---EVMQLLEGMNSN 585

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              PN  TY  V +   +  +V+ A  +L  M   G +PD
Sbjct: 586 SFPPNIITYNTVLDCLCKNGEVNYALDMLYSMTMNGCMPD 625



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 67/136 (49%), Gaps = 5/136 (3%)

Query: 97  LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
           L + G   EA ++  +++++G  PDVV +T +I+    AG+  +A  VF +M AS   P+
Sbjct: 251 LGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQILCDAGRLADAKDVFWKMKASDQKPD 310

Query: 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
             TY  L+     + D  +       +    +   G   N  +YTA  +A  +  +VDEA
Sbjct: 311 RVTYITLLDKCGDSGDSRS-----VSEIWNALKADGYNDNVVSYTAAVDALCQVGRVDEA 365

Query: 217 RGLLQQMKAKGFVPDE 232
             +  +MK KG +P +
Sbjct: 366 LDVFDEMKQKGIIPQQ 381



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 79/160 (49%), Gaps = 8/160 (5%)

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F+ M   G T N    V   +   K G + +AL+ +  +K KG +PDVVA  AV+   
Sbjct: 402 ELFNHMNIHGPTPNGYTHVLFINYHGKSGESLKALKRYELMKSKGIVPDVVAGNAVLYGL 461

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           A  G+   A RVF  + A G++P+  TY ++IK  + A++ +     +A K   EM+   
Sbjct: 462 AKTGRLGMAKRVFHELKAMGISPDNITYTMMIKCCSKASNAD-----EAMKIFAEMIENR 516

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
             P+     ++ +   +A + +EA  +  ++K     P +
Sbjct: 517 CAPDVLAMNSLIDMLYKAGRGNEAWKIFYELKEMNLEPTD 556



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 78/160 (48%), Gaps = 8/160 (5%)

Query: 75   QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            + +F +M   G   N      + +     G T +  +LF  + ++G  PD+ ++T VI+ 
Sbjct: 891  EALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTVVIDT 950

Query: 132  YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              + G+  + L  F ++   G+ P+  TY +LI GL     G +  L +A     +M  K
Sbjct: 951  LCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGL-----GKSGRLEEALSLYNDMEKK 1005

Query: 192  GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            G+ PN  TY ++     +A K  EA  + +++ AKG+ P+
Sbjct: 1006 GIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPN 1045



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 81/175 (46%), Gaps = 10/175 (5%)

Query: 63  VVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM 119
           +VDE+  D    +E+F +M+  G   +      + DA+ K     + L++  ++ +KG+ 
Sbjct: 776 LVDEDLIDIA--EELFSEMKRLGCDPDEFTYHLILDAMGKSMRIEDMLKIQEEMHNKGYK 833

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
              V +  +I     +    EA+ ++ ++++ G +P   TY  L+ GL    DGN +   
Sbjct: 834 STYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGL--LKDGNIE--- 888

Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
           DA+    EM+  G  PN   Y  +   +  A   ++   L + M  +G  PD K+
Sbjct: 889 DAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKS 943



 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 76/158 (48%), Gaps = 8/158 (5%)

Query: 87  TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFM 146
           T N +  F  L K G   EA+ ++  +   G +P V  ++ ++ A+      +  + +  
Sbjct: 173 TYNGLIYF--LVKSGFDREAMDVYKAMAADGVVPTVRTYSVLMLAFGKRRDAETVVGLLG 230

Query: 147 RMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEA 206
            M A GV PN Y+Y + I+ L     G A  L +A + L +M  +G +P+  T T + + 
Sbjct: 231 EMEARGVRPNVYSYTICIRVL-----GQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQI 285

Query: 207 FVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRG 244
              A ++ +A+ +  +MKA    PD +     L+DK G
Sbjct: 286 LCDAGRLADAKDVFWKMKASDQKPD-RVTYITLLDKCG 322



 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 76/162 (46%), Gaps = 8/162 (4%)

Query: 73  NLQEIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           ++ ++F  M+ + +  N      +F A+  +G    A      +K+ G + +   +  +I
Sbjct: 119 DVAQVFDLMQRQIIKANVGTFCTVFGAVGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLI 178

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
                +G  +EA+ V+  M A GV P   TY+VL+       D    +       L EM 
Sbjct: 179 YFLVKSGFDREAMDVYKAMAADGVVPTVRTYSVLMLAFGKRRDAETVV-----GLLGEME 233

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +G+RPN  +YT       +A +++EA  +L++M+ +G  PD
Sbjct: 234 ARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPD 275



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +++F KM+      + V    + D     G +    +++  +K  G+  +VV++TA ++A
Sbjct: 296 KDVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGYNDNVVSYTAAVDA 355

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G+  EAL VF  M   G+ P  Y+Y  LI G   A   N      A +    M   
Sbjct: 356 LCQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNR-----ALELFNHMNIH 410

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G  PN  T+        ++ +  +A    + MK+KG VPD
Sbjct: 411 GPTPNGYTHVLFINYHGKSGESLKALKRYELMKSKGIVPD 450



 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 7/92 (7%)

Query: 77   IFHKMRTEGL-----TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            +++ M  +G+     T N++ ++  L K G   EA +++ ++  KG  P+V  + A+I  
Sbjct: 998  LYNDMEKKGIAPNLYTYNSLILY--LGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRG 1055

Query: 132  YASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
            Y+ +G  + A   + RM+  G  PN+ TY  L
Sbjct: 1056 YSVSGSPENAFAAYGRMIVGGCRPNSSTYMQL 1087



 Score = 45.4 bits (106), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 33/167 (19%), Positives = 71/167 (42%), Gaps = 12/167 (7%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +IF++++   L         +   L ++G   E +QL   +      P+++ +  V++  
Sbjct: 542 KIFYELKEMNLEPTDCTYNTLLAGLGREGKVKEVMQLLEGMNSNSFPPNIITYNTVLDCL 601

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+   AL +   M  +G  P+  +Y  ++ GL    +G      D   ++   + K 
Sbjct: 602 CKNGEVNYALDMLYSMTMNGCMPDLSSYNTVMYGL--VKEGRL----DEAFWMFCQMKKV 655

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
           + P+  T   +  +FVR+  + EA   L  ++     PD K  + ++
Sbjct: 656 LAPDYATVCTILPSFVRSGLMKEA---LHTVREYILQPDSKVDRSSV 699


>gi|125532572|gb|EAY79137.1| hypothetical protein OsI_34244 [Oryza sativa Indica Group]
          Length = 508

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 62/135 (45%), Gaps = 5/135 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D LS+ G        F ++  KG  PDVV +T +I  Y +AG+  EA + F  ML  G
Sbjct: 364 LIDGLSRAGNLEACKYFFDEMVKKGCQPDVVCYTVMITGYVAAGEFDEAQKFFDDMLLRG 423

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN YTY  +I GL    +        A   L +M  +G  PN   Y+ +      A K
Sbjct: 424 QLPNVYTYNSMICGLCIVGE-----FDKACSLLKDMESRGCTPNFTVYSTLVSRLRNAGK 478

Query: 213 VDEARGLLQQMKAKG 227
             EA  ++Q M  KG
Sbjct: 479 DSEANNIIQYMTNKG 493



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 73/166 (43%), Gaps = 24/166 (14%)

Query: 85  GLTNNAVKMFDALSKDGLTHE-------------------ALQLFAQIKDKGHMPDVVAH 125
           G  N   K+ D + K+GL  +                   AL L   + D G +P V+  
Sbjct: 302 GKLNQFHKLLDEMGKNGLAPDLYTYNLLLHVLGKGDKPLAALNLLNYMSDVGCVPTVLHF 361

Query: 126 TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185
           T +I+  + AG  +     F  M+  G  P+   Y V+I G  AA +       +AQK+ 
Sbjct: 362 TNLIDGLSRAGNLEACKYFFDEMVKKGCQPDVVCYTVMITGYVAAGE-----FDEAQKFF 416

Query: 186 MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +M+ +G  PN  TY ++        + D+A  LL+ M+++G  P+
Sbjct: 417 DDMLLRGQLPNVYTYNSMICGLCIVGEFDKACSLLKDMESRGCTPN 462



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 75/172 (43%), Gaps = 34/172 (19%)

Query: 94  FDALSKDGLTHEALQLFAQIKDK----GHMPDVVAHTAVIEAYASAGQGKEALRVFMRML 149
           F+A+    LT E   L   +  K    GH PDV+ +  V+ A    G+  +  ++   M 
Sbjct: 256 FNAILHTLLTIEQYSLIEWVHQKMIAEGHSPDVLTYNVVMRAKYMLGKLNQFHKLLDEMG 315

Query: 150 ASGVAPNAYTYAVLI-------KGLAA---------------------AADGNAKILG-D 180
            +G+AP+ YTY +L+       K LAA                       DG ++    +
Sbjct: 316 KNGLAPDLYTYNLLLHVLGKGDKPLAALNLLNYMSDVGCVPTVLHFTNLIDGLSRAGNLE 375

Query: 181 AQKYLM-EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           A KY   EMV KG +P+   YT +   +V A + DEA+     M  +G +P+
Sbjct: 376 ACKYFFDEMVKKGCQPDVVCYTVMITGYVAAGEFDEAQKFFDDMLLRGQLPN 427



 Score = 37.4 bits (85), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 5/130 (3%)

Query: 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
           GL    ++ F +  +  + P   +  A++    +  Q      V  +M+A G +P+  TY
Sbjct: 232 GLRRRLVERFIKSSNFNYRPFRNSFNAILHTLLTIEQYSLIEWVHQKMIAEGHSPDVLTY 291

Query: 161 AVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
            V+++            L    K L EM   G+ P+  TY  +     +  K   A  LL
Sbjct: 292 NVVMRAKYMLGK-----LNQFHKLLDEMGKNGLAPDLYTYNLLLHVLGKGDKPLAALNLL 346

Query: 221 QQMKAKGFVP 230
             M   G VP
Sbjct: 347 NYMSDVGCVP 356


>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g74580-like [Cucumis
           sativus]
          Length = 877

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 8/159 (5%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M  +G+  + +   K+   L K G   E+ +LF+++  +G  P++      I+   
Sbjct: 203 LFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLC 262

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G   EA R+   +++ G+ P+  +Y  LI G    +      L +A+ YL +MV  G+
Sbjct: 263 RKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSK-----LVEAECYLHKMVNSGV 317

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
            PN  TY  +   F +A  +  A  +L+    KGF+PDE
Sbjct: 318 EPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDE 356



 Score = 73.2 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 41/137 (29%), Positives = 65/137 (47%), Gaps = 5/137 (3%)

Query: 95  DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           + L K G   +A  +      KG +PD+     +I+ Y       +A+ +   ML+ G+ 
Sbjct: 434 NGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGIT 493

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
           P+  TY  L+ GL       A+ L +       M+ KG  PN  TY  + E+F + +KV 
Sbjct: 494 PDVITYNTLLNGLC-----KARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVS 548

Query: 215 EARGLLQQMKAKGFVPD 231
           EA  L ++MK +G  PD
Sbjct: 549 EAMELFKEMKTRGLTPD 565



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 69/139 (49%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L  DG  + A+ +F +  +KG    ++ +  +++  +  G   +AL++   M+  G
Sbjct: 362 LINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHG 421

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            +P+ +TY +++ GL          L DA   L + + KG  P+  T+  + + + + + 
Sbjct: 422 CSPDIWTYNLVVNGLCKMG-----CLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRN 476

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +D+A  +L  M + G  PD
Sbjct: 477 MDKAIEILDTMLSHGITPD 495



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 48/199 (24%), Positives = 80/199 (40%), Gaps = 44/199 (22%)

Query: 73  NLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           N+ + F  M  +G T N +    + ++  KD    EA++LF ++K +G  PD+V    +I
Sbjct: 514 NVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLI 573

Query: 130 EAYASAGQGKEALRVFM------------------------------------RMLASGV 153
               S G+  +A  +F+                                    +M  S  
Sbjct: 574 CGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMINAFCXKLNVSMAEKLFHKMGGSDC 633

Query: 154 APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV 213
           AP+ YTY V+I        GN  +   A  +L+E + KG+ P+  T   V        ++
Sbjct: 634 APDNYTYRVMIDSYCKT--GNIDL---AHTFLLENISKGLVPSFTTCGKVLNCLCVTHRL 688

Query: 214 DEARGLLQQMKAKGFVPDE 232
            EA  ++  M   G VP+E
Sbjct: 689 SEAVVIINLMVQNGIVPEE 707



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 5/133 (3%)

Query: 99  KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAY 158
           + G   EA+ +F ++      P V ++ A++      G   +A +V+MRM   G+ P+ Y
Sbjct: 88  RKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVY 147

Query: 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218
           T+ + +K         A     A + L  M G+G   NA +Y AV   F +     EA  
Sbjct: 148 THTIRMKSFCITGRPTA-----ALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYH 202

Query: 219 LLQQMKAKGFVPD 231
           L  +M  +G  PD
Sbjct: 203 LFDEMLKQGICPD 215



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 67/157 (42%), Gaps = 8/157 (5%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
            HKM   G+  N      + +   K G+   A ++      KG +PD   ++++I    +
Sbjct: 309 LHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCN 368

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            G    A+ VF   +  G   +   Y  L+KGL+        ++  A + + +M+  G  
Sbjct: 369 DGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQG-----LVLQALQLMKDMMEHGCS 423

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           P+  TY  V     +   + +A G+L    AKG +PD
Sbjct: 424 PDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPD 460



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 66/139 (47%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L + G   +A +++ ++KD G  PDV  HT  ++++   G+   ALR+   M   G
Sbjct: 117 IMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQG 176

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
              NA +Y  +I G       N +I  +A     EM+ +G+ P+  T+  +     +   
Sbjct: 177 CEFNAVSYCAVISGFYKE---NCQI--EAYHLFDEMLKQGICPDILTFNKLIHVLCKKGN 231

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V E+  L  ++  +G  P+
Sbjct: 232 VQESEKLFSKVMKRGVCPN 250



 Score = 50.4 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 74/189 (39%), Gaps = 34/189 (17%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           EI   M + G+T + +    + + L K       +  F  + +KG  P+++ +  +IE++
Sbjct: 482 EILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESF 541

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKI--------------- 177
               +  EA+ +F  M   G+ P+  T   LI GL +  + +                  
Sbjct: 542 CKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYS 601

Query: 178 ----------------LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221
                           +  A+K   +M G    P+  TY  + +++ +   +D A   L 
Sbjct: 602 TAIFNIMINAFCXKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLL 661

Query: 222 QMKAKGFVP 230
           +  +KG VP
Sbjct: 662 ENISKGLVP 670


>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Cucumis sativus]
          Length = 857

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 8/159 (5%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M  +G+  + +   K+   L K G   E+ +LF+++  +G  P++      I+   
Sbjct: 203 LFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLC 262

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G   EA R+   +++ G+ P+  +Y  LI G    +      L +A+ YL +MV  G+
Sbjct: 263 RKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSK-----LVEAECYLHKMVNSGV 317

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
            PN  TY  +   F +A  +  A  +L+    KGF+PDE
Sbjct: 318 EPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDE 356



 Score = 73.2 bits (178), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 41/137 (29%), Positives = 65/137 (47%), Gaps = 5/137 (3%)

Query: 95  DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           + L K G   +A  +      KG +PD+     +I+ Y       +A+ +   ML+ G+ 
Sbjct: 434 NGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGIT 493

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
           P+  TY  L+ GL       A+ L +       M+ KG  PN  TY  + E+F + +KV 
Sbjct: 494 PDVITYNTLLNGLC-----KARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVS 548

Query: 215 EARGLLQQMKAKGFVPD 231
           EA  L ++MK +G  PD
Sbjct: 549 EAMELFKEMKTRGLTPD 565



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 69/139 (49%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L  DG  + A+ +F +  +KG    ++ +  +++  +  G   +AL++   M+  G
Sbjct: 362 LINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHG 421

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            +P+ +TY +++ GL          L DA   L + + KG  P+  T+  + + + + + 
Sbjct: 422 CSPDIWTYNLVVNGLCKMG-----CLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRN 476

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +D+A  +L  M + G  PD
Sbjct: 477 MDKAIEILDTMLSHGITPD 495



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 48/199 (24%), Positives = 80/199 (40%), Gaps = 44/199 (22%)

Query: 73  NLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           N+ + F  M  +G T N +    + ++  KD    EA++LF ++K +G  PD+V    +I
Sbjct: 514 NVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLI 573

Query: 130 EAYASAGQGKEALRVFM------------------------------------RMLASGV 153
               S G+  +A  +F+                                    +M  S  
Sbjct: 574 CGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMINAFCEKLNVSMAEKLFHKMGGSDC 633

Query: 154 APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV 213
           AP+ YTY V+I        GN  +   A  +L+E + KG+ P+  T   V        ++
Sbjct: 634 APDNYTYRVMIDSYCKT--GNIDL---AHTFLLENISKGLVPSFTTCGKVLNCLCVTHRL 688

Query: 214 DEARGLLQQMKAKGFVPDE 232
            EA  ++  M   G VP+E
Sbjct: 689 SEAVVIINLMVQNGIVPEE 707



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 5/133 (3%)

Query: 99  KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAY 158
           + G   EA+ +F ++      P V ++ A++      G   +A +V+MRM   G+ P+ Y
Sbjct: 88  RKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVY 147

Query: 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218
           T+ + +K         A     A + L  M G+G   NA +Y AV   F +     EA  
Sbjct: 148 THTIRMKSFCITGRPTA-----ALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYH 202

Query: 219 LLQQMKAKGFVPD 231
           L  +M  +G  PD
Sbjct: 203 LFDEMLKQGICPD 215



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/157 (24%), Positives = 67/157 (42%), Gaps = 8/157 (5%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
            HKM   G+  N      + +   K G+   A ++      KG +PD   ++++I    +
Sbjct: 309 LHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCN 368

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            G    A+ VF   +  G   +   Y  L+KGL+        ++  A + + +M+  G  
Sbjct: 369 DGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQG-----LVLQALQLMKDMMEHGCS 423

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           P+  TY  V     +   + +A G+L    AKG +PD
Sbjct: 424 PDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPD 460



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 66/139 (47%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L + G   +A +++ ++KD G  PDV  HT  ++++   G+   ALR+   M   G
Sbjct: 117 IMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQG 176

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
              NA +Y  +I G       N +I  +A     EM+ +G+ P+  T+  +     +   
Sbjct: 177 CEFNAVSYCAVISGFYKE---NCQI--EAYHLFDEMLKQGICPDILTFNKLIHVLCKKGN 231

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V E+  L  ++  +G  P+
Sbjct: 232 VQESEKLFSKVMKRGVCPN 250



 Score = 50.4 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 38/189 (20%), Positives = 74/189 (39%), Gaps = 34/189 (17%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           EI   M + G+T + +    + + L K       +  F  + +KG  P+++ +  +IE++
Sbjct: 482 EILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESF 541

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKI--------------- 177
               +  EA+ +F  M   G+ P+  T   LI GL +  + +                  
Sbjct: 542 CKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYS 601

Query: 178 ----------------LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221
                           +  A+K   +M G    P+  TY  + +++ +   +D A   L 
Sbjct: 602 TAIFNIMINAFCEKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLL 661

Query: 222 QMKAKGFVP 230
           +  +KG VP
Sbjct: 662 ENISKGLVP 670


>gi|8493580|gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
           and contains a RepB PF|01051 protein and multiple PPR
           PF|01535 repeats [Arabidopsis thaliana]
          Length = 613

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 92/205 (44%), Gaps = 31/205 (15%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F +M   GL  N V    +   L + G    A ++F ++   G  PD++ ++ +++  
Sbjct: 400 ELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGL 459

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+ ++AL VF  +  S + P+ YTY ++I+G+  A       + D       +  KG
Sbjct: 460 CKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGK-----VEDGWDLFCSLSLKG 514

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP----------------DEKAVK 236
           ++PN   YT +   F R    +EA  L ++MK  G +P                D+ A  
Sbjct: 515 VKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASA 574

Query: 237 EALIDKRGQGFRG-------VINIL 254
           E + + R  GF G       VIN+L
Sbjct: 575 ELIKEMRSCGFVGDASTISMVINML 599



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 74/139 (53%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DAL      ++AL LF ++ +KG  P+VV + ++I    + G+  +A R+   M+   
Sbjct: 245 IIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERK 304

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN  T++ LI   A   +G    L +A+K   EM+ + + P+  TY+++   F    +
Sbjct: 305 INPNVVTFSALID--AFVKEGK---LVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDR 359

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +DEA+ + + M +K   P+
Sbjct: 360 LDEAKHMFELMISKDCFPN 378



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 76/164 (46%), Gaps = 8/164 (4%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           Q+IF KM ++G+  + +    + D L K G   +AL +F  ++     PD+  +  +IE 
Sbjct: 434 QKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEG 493

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              AG+ ++   +F  +   GV PN   Y  +I G          +  +A     EM   
Sbjct: 494 MCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKG-----LKEEADALFREMKED 548

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAV 235
           G  PN+GTY  +  A +R      +  L+++M++ GFV D   +
Sbjct: 549 GTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTI 592



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 68/137 (49%), Gaps = 5/137 (3%)

Query: 95  DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           + L K G    AL L  +++      DVV +T +I+A  +     +AL +F  M   G+ 
Sbjct: 212 NGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIR 271

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
           PN  TY  LI+ L      N     DA + L +M+ + + PN  T++A+ +AFV+  K+ 
Sbjct: 272 PNVVTYNSLIRCLC-----NYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLV 326

Query: 215 EARGLLQQMKAKGFVPD 231
           EA  L  +M  +   PD
Sbjct: 327 EAEKLYDEMIKRSIDPD 343



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 67/139 (48%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DA  K+G   EA +L+ ++  +   PD+  ++++I  +    +  EA  +F  M++  
Sbjct: 315 LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKD 374

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN  TY  LIKG        AK + +  +   EM  +G+  N  TY  + +   +A  
Sbjct: 375 CFPNVVTYNTLIKGFC-----KAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGD 429

Query: 213 VDEARGLLQQMKAKGFVPD 231
            D A+ + ++M + G  PD
Sbjct: 430 CDMAQKIFKKMVSDGVPPD 448



 Score = 53.9 bits (128), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 65/177 (36%), Gaps = 36/177 (20%)

Query: 100 DGLTH-----EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           +G  H     EA+ L  Q+    + P+ V    +I       +  EA+ +  RM+A G  
Sbjct: 142 NGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQ 201

Query: 155 PNAYTYAVLIKGLAAAAD------------------------------GNAKILGDAQKY 184
           P+ +TY  ++ GL    D                               N K + DA   
Sbjct: 202 PDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNL 261

Query: 185 LMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
             EM  KG+RPN  TY ++        +  +A  LL  M  +   P+      ALID
Sbjct: 262 FTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPN-VVTFSALID 317



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 63/136 (46%), Gaps = 6/136 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           AL +  ++   G+ PD+V  ++++  Y    +  EA+ +  +M      PN  T+  LI 
Sbjct: 118 ALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIH 177

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           GL      +     +A   +  MV +G +P+  TY  V     +   +D A  LL++M+ 
Sbjct: 178 GLFLHNKAS-----EAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKME- 231

Query: 226 KGFVPDEKAVKEALID 241
           KG +  +  +   +ID
Sbjct: 232 KGKIEADVVIYTTIID 247



 Score = 38.9 bits (89), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 5/127 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +A+ LF ++     +P +V    ++ A A   +    + +  RM    ++ + Y+Y +LI
Sbjct: 47  DAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILI 106

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
                 +      L  A   L +M+  G  P+  T +++   +   +++ EA  L+ QM 
Sbjct: 107 NCFCRRSQ-----LPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMF 161

Query: 225 AKGFVPD 231
              + P+
Sbjct: 162 VMEYQPN 168


>gi|79369396|ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62930, chloroplastic; Flags: Precursor
 gi|332195902|gb|AEE34023.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 92/205 (44%), Gaps = 31/205 (15%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F +M   GL  N V    +   L + G    A ++F ++   G  PD++ ++ +++  
Sbjct: 416 ELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGL 475

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+ ++AL VF  +  S + P+ YTY ++I+G+  A       + D       +  KG
Sbjct: 476 CKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGK-----VEDGWDLFCSLSLKG 530

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP----------------DEKAVK 236
           ++PN   YT +   F R    +EA  L ++MK  G +P                D+ A  
Sbjct: 531 VKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASA 590

Query: 237 EALIDKRGQGFRG-------VINIL 254
           E + + R  GF G       VIN+L
Sbjct: 591 ELIKEMRSCGFVGDASTISMVINML 615



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 74/139 (53%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DAL      ++AL LF ++ +KG  P+VV + ++I    + G+  +A R+   M+   
Sbjct: 261 IIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERK 320

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN  T++ LI   A   +G    L +A+K   EM+ + + P+  TY+++   F    +
Sbjct: 321 INPNVVTFSALID--AFVKEGK---LVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDR 375

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +DEA+ + + M +K   P+
Sbjct: 376 LDEAKHMFELMISKDCFPN 394



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 76/164 (46%), Gaps = 8/164 (4%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           Q+IF KM ++G+  + +    + D L K G   +AL +F  ++     PD+  +  +IE 
Sbjct: 450 QKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEG 509

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              AG+ ++   +F  +   GV PN   Y  +I G          +  +A     EM   
Sbjct: 510 MCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKG-----LKEEADALFREMKED 564

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAV 235
           G  PN+GTY  +  A +R      +  L+++M++ GFV D   +
Sbjct: 565 GTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTI 608



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 68/137 (49%), Gaps = 5/137 (3%)

Query: 95  DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           + L K G    AL L  +++      DVV +T +I+A  +     +AL +F  M   G+ 
Sbjct: 228 NGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIR 287

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
           PN  TY  LI+ L      N     DA + L +M+ + + PN  T++A+ +AFV+  K+ 
Sbjct: 288 PNVVTYNSLIRCLC-----NYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLV 342

Query: 215 EARGLLQQMKAKGFVPD 231
           EA  L  +M  +   PD
Sbjct: 343 EAEKLYDEMIKRSIDPD 359



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 67/139 (48%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DA  K+G   EA +L+ ++  +   PD+  ++++I  +    +  EA  +F  M++  
Sbjct: 331 LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKD 390

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN  TY  LIKG        AK + +  +   EM  +G+  N  TY  + +   +A  
Sbjct: 391 CFPNVVTYNTLIKGFC-----KAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGD 445

Query: 213 VDEARGLLQQMKAKGFVPD 231
            D A+ + ++M + G  PD
Sbjct: 446 CDMAQKIFKKMVSDGVPPD 464



 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 65/177 (36%), Gaps = 36/177 (20%)

Query: 100 DGLTH-----EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           +G  H     EA+ L  Q+    + P+ V    +I       +  EA+ +  RM+A G  
Sbjct: 158 NGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQ 217

Query: 155 PNAYTYAVLIKGLAAAAD------------------------------GNAKILGDAQKY 184
           P+ +TY  ++ GL    D                               N K + DA   
Sbjct: 218 PDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNL 277

Query: 185 LMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
             EM  KG+RPN  TY ++        +  +A  LL  M  +   P+      ALID
Sbjct: 278 FTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTF-SALID 333



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 63/136 (46%), Gaps = 6/136 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           AL +  ++   G+ PD+V  ++++  Y    +  EA+ +  +M      PN  T+  LI 
Sbjct: 134 ALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIH 193

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           GL      +     +A   +  MV +G +P+  TY  V     +   +D A  LL++M+ 
Sbjct: 194 GLFLHNKAS-----EAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKME- 247

Query: 226 KGFVPDEKAVKEALID 241
           KG +  +  +   +ID
Sbjct: 248 KGKIEADVVIYTTIID 263



 Score = 38.9 bits (89), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 5/127 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +A+ LF ++     +P +V    ++ A A   +    + +  RM    ++ + Y+Y +LI
Sbjct: 63  DAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILI 122

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
                 +      L  A   L +M+  G  P+  T +++   +   +++ EA  L+ QM 
Sbjct: 123 NCFCRRSQ-----LPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMF 177

Query: 225 AKGFVPD 231
              + P+
Sbjct: 178 VMEYQPN 184


>gi|341605803|gb|AEK83004.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605805|gb|AEK83005.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605823|gb|AEK83014.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 75/146 (51%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+G  +E   +F  +  KG  P+V  +T +I+ YA +G  ++A+R+  RM+  G  P
Sbjct: 26  GLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKP 85

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY V++ GL      N ++  +A  Y       G+  N+  Y+++ +   +A ++DE
Sbjct: 86  DVVTYXVVVNGLCK----NGRV-EEALDYFQTCRFNGLAINSMFYSSLIDGLGKAGRIDE 140

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      ALID
Sbjct: 141 AERLFEEMSEKGCTRDSYCYN-ALID 165



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 71/134 (52%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ D+G  PDVV +  V+      G+ +EAL  F     +G
Sbjct: 58  LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYXVVVNGLCKNGRVEEALDYFQTCRFNG 117

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +A N+  Y+ LI GL     G A  + +A++   EM  KG   ++  Y A+ +A  +  K
Sbjct: 118 LAINSMFYSSLIDGL-----GKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGK 172

Query: 213 VDEARGLLQQMKAK 226
           VDEA  L ++M+ +
Sbjct: 173 VDEAMTLFKRMEEE 186



 Score = 53.5 bits (127), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 60/143 (41%), Gaps = 6/143 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
            + L+ ++ +KG        + VI      G+  E   VF  M+  G  PN   Y VLI 
Sbjct: 1   CVALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLID 60

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G A +       + DA + L  M+ +G +P+  TY  V     +  +V+EA    Q  + 
Sbjct: 61  GYAKSGS-----VEDAIRLLHRMIDEGFKPDVVTYXVVVNGLCKNGRVEEALDYFQTCRF 115

Query: 226 KGFVPDEKAVKEALIDKRGQGFR 248
            G   +      +LID  G+  R
Sbjct: 116 NGLAIN-SMFYSSLIDGLGKAGR 137


>gi|302780731|ref|XP_002972140.1| hypothetical protein SELMODRAFT_450859 [Selaginella moellendorffii]
 gi|300160439|gb|EFJ27057.1| hypothetical protein SELMODRAFT_450859 [Selaginella moellendorffii]
          Length = 482

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
            F++M  +G+    V    + D L K      A ++F    + G  P VV  + +++ + 
Sbjct: 228 FFNRMEKDGVRPQEVTFTVLIDGLCKANRVARAKEIFFSYLESGGSPSVVICSCLMDGFC 287

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G   EA R+F  M   G  PN  +  +LI GL       AK L  A++   E+V +  
Sbjct: 288 KYGGVDEAWRIFELMTNRGCTPNDVSCNILINGLC-----KAKRLSQAREVFEEVVKRQA 342

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +P+  TY+   +   RA +VD+AR +L  +  KG  PD
Sbjct: 343 KPDVVTYSTFMDGLCRAHRVDQARQVLCMLVDKGGTPD 380



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 77/151 (50%), Gaps = 8/151 (5%)

Query: 79  HKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQG 138
            ++R   L N  +   D+L K  +  +A   F ++KD   + + V++  +I A+    + 
Sbjct: 61  QQLRERHLVNITI---DSLCKSDMIDKAESWFQELKDFRGLVNTVSYNILINAFCKTKRI 117

Query: 139 KEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAG 198
            EA+++F  M A G AP+  TY  LI GL        + LG+AQ++   ++  G   +  
Sbjct: 118 DEAIQLFGEMKAPGCAPSTSTYNTLIGGLC-----RVERLGEAQQFYERLLSSGAGASFI 172

Query: 199 TYTAVFEAFVRAQKVDEARGLLQQMKAKGFV 229
           TY  + + F +A +V EA  LL ++ A+G V
Sbjct: 173 TYNILVDGFCKADRVPEAVELLNELVARGGV 203



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 61/110 (55%), Gaps = 6/110 (5%)

Query: 95  DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVF-MRMLASGV 153
           D L +     +A Q+   + DKG  PDVV +TA+I    S G+  EA +VF + M A+G 
Sbjct: 354 DGLCRAHRVDQARQVLCMLVDKGGTPDVVMYTALISGLCSLGRLDEARKVFEVDMRAAGC 413

Query: 154 APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAV 203
           APN +T  VL+ G      G A  L +A++     V +G++P+  T++A+
Sbjct: 414 APNNFTCNVLVNGF-----GLAGRLDEARELFQRFVERGVQPDCRTFSAM 458



 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 73/159 (45%), Gaps = 9/159 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           IF  M   G T N V    + + L K     +A ++F ++  +   PDVV ++  ++   
Sbjct: 298 IFELMTNRGCTPNDVSCNILINGLCKAKRLSQAREVFEEVVKRQAKPDVVTYSTFMDGLC 357

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQK-YLMEMVGKG 192
            A +  +A +V   ++  G  P+   Y  LI GL +        L +A+K + ++M   G
Sbjct: 358 RAHRVDQARQVLCMLVDKGGTPDVVMYTALISGLCSLGR-----LDEARKVFEVDMRAAG 412

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             PN  T   +   F  A ++DEAR L Q+   +G  PD
Sbjct: 413 CAPNNFTCNVLVNGFGLAGRLDEARELFQRFVERGVQPD 451



 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 64/168 (38%), Gaps = 30/168 (17%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +A  K     EA+QLF ++K  G  P    +  +I       +  EA + + R+L+SG
Sbjct: 107 LINAFCKTKRIDEAIQLFGEMKAPGCAPSTSTYNTLIGGLCRVERLGEAQQFYERLLSSG 166

Query: 153 VAPNAYTYAVLIKGLAAA----------------------ADGNAKI--------LGDAQ 182
              +  TY +L+ G   A                      A  N  I        + +A+
Sbjct: 167 AGASFITYNILVDGFCKADRVPEAVELLNELVARGGVVTSAPYNCIIDTLFKKGKIHEAE 226

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
            +   M   G+RP   T+T + +   +A +V  A+ +       G  P
Sbjct: 227 LFFNRMEKDGVRPQEVTFTVLIDGLCKANRVARAKEIFFSYLESGGSP 274



 Score = 42.0 bits (97), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 10/136 (7%)

Query: 96  ALSKDGLTHEALQLF-AQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
            L   G   EAL+LF + + D   +P       ++   + AG+ +E L+V   ML     
Sbjct: 8   CLCHVGKLDEALELFHSLVSDGCGLP----ADLLVRELSKAGRAEECLKVVKLMLDRQQL 63

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
              +   + I  L       + ++  A+ +  E+       N  +Y  +  AF + +++D
Sbjct: 64  RERHLVNITIDSLC-----KSDMIDKAESWFQELKDFRGLVNTVSYNILINAFCKTKRID 118

Query: 215 EARGLLQQMKAKGFVP 230
           EA  L  +MKA G  P
Sbjct: 119 EAIQLFGEMKAPGCAP 134


>gi|297797589|ref|XP_002866679.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312514|gb|EFH42938.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 915

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 49/171 (28%), Positives = 77/171 (45%), Gaps = 34/171 (19%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M D+L K     EA  LF  ++ K  +P+VV +TA+I+ Y  AG+  EA  +  +ML+  
Sbjct: 503 MIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKN 562

Query: 153 VAPNAYTYAVLIKGLAAAADGNAK---------------------------ILGD----- 180
             PN+ T+  LI GL    DG  K                           +L D     
Sbjct: 563 CLPNSLTFNALIHGL--CTDGKLKEATLLEEKMVKIDLQPTVSTDTILIHRLLKDGDFDH 620

Query: 181 AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           A +   +M+  G +P+A TYT   + + R  ++ +A  ++ +MK  G  PD
Sbjct: 621 AYRRFQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKENGVSPD 671



 Score = 76.6 bits (187), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 45/167 (26%), Positives = 83/167 (49%), Gaps = 8/167 (4%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F +M  +G   N V    +   L  +    EA+ LF ++KD    P V  +T +I+A 
Sbjct: 274 KVFKEMPLKGCRRNEVAYTHLIHGLCVERRIDEAMDLFVKMKDDDCYPTVRTYTVLIKAL 333

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             + +  EAL +   M   G+ PN +TY VLI  L +        L  A++ L +M+ KG
Sbjct: 334 CGSERKSEALNLVKEMEEKGIKPNIHTYTVLIDSLCSQCK-----LEKARELLGQMLEKG 388

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
           + PN  TY A+   + +   +++A  +++ M+++   P+ +   E +
Sbjct: 389 LMPNVITYNALINGYCKRGMIEDALDVVELMESRNLRPNTRTYNELI 435



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/139 (30%), Positives = 68/139 (48%), Gaps = 6/139 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D+L       +A +L  Q+ +KG MP+V+ + A+I  Y   G  ++AL V   M +  
Sbjct: 364 LIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDALDVVELMESRN 423

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN  TY  LIKG         + +  A   L +M+ + + P+  TY ++ +   R+  
Sbjct: 424 LRPNTRTYNELIKGYC------KRNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGN 477

Query: 213 VDEARGLLQQMKAKGFVPD 231
            D A  LL  M  +G VPD
Sbjct: 478 FDSAYRLLSLMNDRGLVPD 496



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/128 (26%), Positives = 68/128 (53%), Gaps = 5/128 (3%)

Query: 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
           H+A+ +  ++ ++  +PDVV + ++I+    +G    A R+   M   G+ P+ +TY  +
Sbjct: 444 HKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSM 503

Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           I  L       +K + +A      +  K + PN   YTA+ + + +A KV+EA  +L++M
Sbjct: 504 IDSLC-----KSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKM 558

Query: 224 KAKGFVPD 231
            +K  +P+
Sbjct: 559 LSKNCLPN 566



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 51/191 (26%), Positives = 78/191 (40%), Gaps = 33/191 (17%)

Query: 74  LQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           +++++ +M  + +  N     KM +   K G   EA Q  + I + G  PD   +T++I 
Sbjct: 202 MKQVYMEMLEDKVCPNIYTYNKMVNGYCKVGNVEEANQYVSMIVEAGLDPDFFTYTSLIM 261

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA------AADGNAKILGD---- 180
            Y        A +VF  M   G   N   Y  LI GL        A D   K+  D    
Sbjct: 262 GYCQRKDLDSAFKVFKEMPLKGCRRNEVAYTHLIHGLCVERRIDEAMDLFVKMKDDDCYP 321

Query: 181 --------------------AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
                               A   + EM  KG++PN  TYT + ++     K+++AR LL
Sbjct: 322 TVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHTYTVLIDSLCSQCKLEKARELL 381

Query: 221 QQMKAKGFVPD 231
            QM  KG +P+
Sbjct: 382 GQMLEKGLMPN 392



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 5/132 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + ++L++ GL  E  Q++ ++ +    P++  +  ++  Y   G  +EA +    ++ +G
Sbjct: 189 LLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKVGNVEEANQYVSMIVEAG 248

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+ +TY  LI G     D     L  A K   EM  KG R N   YT +       ++
Sbjct: 249 LDPDFFTYTSLIMGYCQRKD-----LDSAFKVFKEMPLKGCRRNEVAYTHLIHGLCVERR 303

Query: 213 VDEARGLLQQMK 224
           +DEA  L  +MK
Sbjct: 304 IDEAMDLFVKMK 315



 Score = 53.5 bits (127), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 41/185 (22%), Positives = 78/185 (42%), Gaps = 23/185 (12%)

Query: 74  LQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           L+E   K+  +   +    +   L KDG    A + F Q+   G  PD   +T  I+ Y 
Sbjct: 589 LEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYTTFIQTYC 648

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G+ ++A  +  +M  +GV+P+ +TY+ LIKG       N+  +      L  M   G 
Sbjct: 649 REGRLQDAEDMVAKMKENGVSPDLFTYSSLIKGYGDLGRTNSAFV-----VLKRMHDTGC 703

Query: 194 RPNAGTYTAVFEAFVRAQ------------------KVDEARGLLQQMKAKGFVPDEKAV 235
            P+  T+ ++ +  +  +                  + D    LL++M   G  P+ K+ 
Sbjct: 704 EPSQHTFLSLIKHLLEMKYGKVKGGEPGVCVMSNMMEFDIVVELLEKMVEHGVTPNAKSY 763

Query: 236 KEALI 240
           ++ ++
Sbjct: 764 EKLML 768



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 7/147 (4%)

Query: 86  LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVF 145
           LT NA  +   L  DG   EA  L  ++      P V   T +I      G    A R F
Sbjct: 568 LTFNA--LIHGLCTDGKLKEATLLEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHAYRRF 625

Query: 146 MRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFE 205
            +ML+SG  P+A+TY   I+            L DA+  + +M   G+ P+  TY+++ +
Sbjct: 626 QQMLSSGTKPDAHTYTTFIQTYCREGR-----LQDAEDMVAKMKENGVSPDLFTYSSLIK 680

Query: 206 AFVRAQKVDEARGLLQQMKAKGFVPDE 232
            +    + + A  +L++M   G  P +
Sbjct: 681 GYGDLGRTNSAFVVLKRMHDTGCEPSQ 707



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 5/110 (4%)

Query: 125 HTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKY 184
           +  ++ + A  G   E  +V+M ML   V PN YTY  ++ G      GN +   +A +Y
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKV--GNVE---EANQY 240

Query: 185 LMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
           +  +V  G+ P+  TYT++   + + + +D A  + ++M  KG   +E A
Sbjct: 241 VSMIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFKEMPLKGCRRNEVA 290


>gi|357138821|ref|XP_003570985.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g35130-like [Brachypodium distachyon]
          Length = 613

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 86/172 (50%), Gaps = 8/172 (4%)

Query: 71  PRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P +  +IF++M++ G   N      + +A +++GL  +A ++F Q++  GH PDV A+ A
Sbjct: 308 PMSAMKIFNEMQSIGCKANICTYTALVNAFAREGLCEKAEEVFEQMQQAGHEPDVYAYNA 367

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           ++EAY+ AG  + A  +F  M   G  P+  +Y +L+      A G A +  +A+     
Sbjct: 368 LMEAYSRAGFPQGASEIFSLMQHMGCEPDRASYNILVD-----AYGRAGLHREAEATFES 422

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
           +  +GM P   ++  +  A  R+  V     ++ Q+   G  PD  A+   L
Sbjct: 423 LKQQGMAPTMKSHMLLLSAHARSGNVGRCEQVMAQLHKSGLRPDTFALNAML 474



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 78/164 (47%), Gaps = 12/164 (7%)

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E++ +M+ E    N      M +   K      A+++F +++  G   ++  +TA++ A+
Sbjct: 278 EVYQRMKKERCRTNTETYTLMINVYGKSKQPMSAMKIFNEMQSIGCKANICTYTALVNAF 337

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA--DGNAKILGDAQKYLMEMVG 190
           A  G  ++A  VF +M  +G  P+ Y Y  L++  + A    G ++I       LM+ + 
Sbjct: 338 AREGLCEKAEEVFEQMQQAGHEPDVYAYNALMEAYSRAGFPQGASEIFS-----LMQHM- 391

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
            G  P+  +Y  + +A+ RA    EA    + +K +G  P  K+
Sbjct: 392 -GCEPDRASYNILVDAYGRAGLHREAEATFESLKQQGMAPTMKS 434



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 77/175 (44%), Gaps = 15/175 (8%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +M+  G+  +A       D L K   T +A++++ ++K +    +   +T +I  Y 
Sbjct: 244 VISEMQEHGIPPSATVYNAYLDGLLKARCTVKAVEVYQRMKKERCRTNTETYTLMINVYG 303

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            + Q   A+++F  M + G   N  TY  L+   A        +   A++   +M   G 
Sbjct: 304 KSKQPMSAMKIFNEMQSIGCKANICTYTALVNAFAREG-----LCEKAEEVFEQMQQAGH 358

Query: 194 RPNAGTYTAVFEAFVRA---QKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
            P+   Y A+ EA+ RA   Q   E   L+Q M   G  PD +A    L+D  G+
Sbjct: 359 EPDVYAYNALMEAYSRAGFPQGASEIFSLMQHM---GCEPD-RASYNILVDAYGR 409



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 54/105 (51%), Gaps = 5/105 (4%)

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
           PD++ +  +I+AY    Q  +A  ++  +L +   P   TYA+L++        NA+ L 
Sbjct: 185 PDIICYNLLIDAYGRKRQLNKAESIYAAVLEAQCVPTEDTYALLLRAYC-----NARSLH 239

Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            A+  + EM   G+ P+A  Y A  +  ++A+   +A  + Q+MK
Sbjct: 240 RAEGVISEMQEHGIPPSATVYNAYLDGLLKARCTVKAVEVYQRMK 284



 Score = 43.5 bits (101), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 63/169 (37%), Gaps = 30/169 (17%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DA  +    ++A  ++A + +   +P    +  ++ AY +A     A  V   M   G
Sbjct: 193 LIDAYGRKRQLNKAESIYAAVLEAQCVPTEDTYALLLRAYCNARSLHRAEGVISEMQEHG 252

Query: 153 VAPNAYTYAVLIKGLAAA------------------------------ADGNAKILGDAQ 182
           + P+A  Y   + GL  A                                G +K    A 
Sbjct: 253 IPPSATVYNAYLDGLLKARCTVKAVEVYQRMKKERCRTNTETYTLMINVYGKSKQPMSAM 312

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           K   EM   G + N  TYTA+  AF R    ++A  + +QM+  G  PD
Sbjct: 313 KIFNEMQSIGCKANICTYTALVNAFAREGLCEKAEEVFEQMQQAGHEPD 361



 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 74/189 (39%), Gaps = 37/189 (19%)

Query: 72  RNLQEIFHKMRTEGLT---NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R  +  F  ++ +G+     + + +  A ++ G      Q+ AQ+   G  PD  A  A+
Sbjct: 414 REAEATFESLKQQGMAPTMKSHMLLLSAHARSGNVGRCEQVMAQLHKSGLRPDTFALNAM 473

Query: 129 IEAYASAGQGKEALRVFMRMLASG--------VAPNAYTYAVLIKGLAAAADG------- 173
           + AYA AG+  +  R+   M  +G        VA NAY  A  +  + AA +G       
Sbjct: 474 LHAYARAGRLDDMERLLAAMDLAGSADVGSHNVAVNAYARAGYLGRMEAAFEGIRRRKGK 533

Query: 174 -------------------NAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
                                K  G   +   EMV  G  P+AGT   +  A    ++V+
Sbjct: 534 KGGIDADVVSWTSRMGGYARKKEYGKCLEIFEEMVDAGCYPDAGTAKVLMAACSDERQVE 593

Query: 215 EARGLLQQM 223
           +   +++ M
Sbjct: 594 QVAAIVRSM 602


>gi|356522850|ref|XP_003530056.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Glycine max]
          Length = 545

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/173 (26%), Positives = 81/173 (46%), Gaps = 10/173 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
            ++ +M  + +  N V    + D L K G    A  L  ++ D+GH  +V+ + ++I   
Sbjct: 356 NLYKEMHQKNMVPNTVTYNSLIDGLCKSGRISYAWDLIDEMHDRGHHANVITYNSLINGL 415

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              GQ  +A+ +  +M   G+ P+ YT  +L+ GL        K L +AQ    +++ KG
Sbjct: 416 CKNGQLDKAIALINKMKDQGIQPDMYTLNILLHGLLC----KGKRLKNAQGLFQDLLDKG 471

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE---KAVKEALIDK 242
             PN  TY  +     +   +DEA  L  +M+  G  P+    K +  AL++K
Sbjct: 472 YHPNVYTYNIIIYGHCKEGLLDEAYALQSKMEDSGCSPNAITFKIIICALLEK 524



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 75/176 (42%), Gaps = 33/176 (18%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K  L  EA  LF+++  KG   +VV ++A+I  +   G+  EAL     M+   
Sbjct: 209 IIDCLCKRKLVSEACNLFSEMSVKGISANVVTYSAIIHGFCIVGKLTEALGFLNEMVLKA 268

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAF----- 207
           + P+ Y Y  L+  L    +G  K   +A+  L  +V   ++PN  TY  + + +     
Sbjct: 269 INPDVYIYNTLVDAL--HKEGKVK---EAKNVLAVIVKTCLKPNVITYNTLIDGYAKHVF 323

Query: 208 ----------------------VRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
                                  + ++V+EA  L ++M  K  VP+      +LID
Sbjct: 324 NAVGLMGVTPDVWSYNIMINRLCKIKRVEEALNLYKEMHQKNMVPNT-VTYNSLID 378



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 71/158 (44%), Gaps = 9/158 (5%)

Query: 78  FH-KMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           FH K+  +G   + V    + + + K G T  A+QL  +I  +   P+VV +  +I+   
Sbjct: 155 FHDKLLAQGFRLDQVSYGTLINGVCKIGETRAAIQLLRRIDGRLTEPNVVMYNTIIDCLC 214

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
                 EA  +F  M   G++ N  TY+ +I G           L +A  +L EMV K +
Sbjct: 215 KRKLVSEACNLFSEMSVKGISANVVTYSAIIHGFCIVGK-----LTEALGFLNEMVLKAI 269

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            P+   Y  + +A  +  KV EA+ +L  +      P+
Sbjct: 270 NPDVYIYNTLVDALHKEGKVKEAKNVLAVIVKTCLKPN 307



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 5/136 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +     G  + A  + ++I   G+ PD V  T +I+     GQ K+AL    ++LA G
Sbjct: 104 LINCFCHLGQINLAFSVLSKILKWGYQPDTVTLTTLIKGLCLKGQVKKALHFHDKLLAQG 163

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
              +  +Y  LI G+    +  A I     + L  + G+   PN   Y  + +   + + 
Sbjct: 164 FRLDQVSYGTLINGVCKIGETRAAI-----QLLRRIDGRLTEPNVVMYNTIIDCLCKRKL 218

Query: 213 VDEARGLLQQMKAKGF 228
           V EA  L  +M  KG 
Sbjct: 219 VSEACNLFSEMSVKGI 234



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 5/126 (3%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A  +F  +   G  PDV ++  +I       + +EAL ++  M    + PN  TY  LI 
Sbjct: 319 AKHVFNAVGLMGVTPDVWSYNIMINRLCKIKRVEEALNLYKEMHQKNMVPNTVTYNSLID 378

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           GL  +       +  A   + EM  +G   N  TY ++     +  ++D+A  L+ +MK 
Sbjct: 379 GLCKSGR-----ISYAWDLIDEMHDRGHHANVITYNSLINGLCKNGQLDKAIALINKMKD 433

Query: 226 KGFVPD 231
           +G  PD
Sbjct: 434 QGIQPD 439


>gi|307103654|gb|EFN51912.1| hypothetical protein CHLNCDRAFT_59068 [Chlorella variabilis]
          Length = 1025

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 50/159 (31%), Positives = 83/159 (52%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +++ +M  EG T N V    + D   K G   EA+++   ++ +G  P++  +  VI A 
Sbjct: 251 DVYRQMLAEGCTPNLVTYNTLIDVYGKTGAWEEAIRVLDALERQGIDPEIRTYNTVIIAC 310

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             +GQ +EALR++ RMLA+G  P A TY  LI     +A G    L  A +   +MV +G
Sbjct: 311 NMSGQAQEALRIYERMLAAGAQPTATTYTALI-----SAYGKNGQLDRALQIFQDMVRRG 365

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              N  TY+++  A  +A + + A  L ++M  +G  P+
Sbjct: 366 CERNVITYSSLISACEKAGRWELALELFREMHTEGCRPN 404



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/158 (29%), Positives = 72/158 (45%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           I+ +M   G    A     +  A  K+G    ALQ+F  +  +G   +V+ ++++I A  
Sbjct: 322 IYERMLAAGAQPTATTYTALISAYGKNGQLDRALQIFQDMVRRGCERNVITYSSLISACE 381

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG+ + AL +F  M   G  PN  TY  LI   A  A         AQ+   +M  +G 
Sbjct: 382 KAGRWELALELFREMHTEGCRPNVVTYNSLIAACAQGAQWE-----KAQEMFEQMQHRGC 436

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +P+A T+  +  A+ RA     A    +QMKA    PD
Sbjct: 437 KPDAVTFGGLIAAYDRAGHWRRALTAFEQMKAHNCRPD 474



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 3/95 (3%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F +M TEG   N V    +  A ++     +A ++F Q++ +G  PD V    +I AY
Sbjct: 391 ELFREMHTEGCRPNVVTYNSLIAACAQGAQWEKAQEMFEQMQHRGCKPDAVTFGGLIAAY 450

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
             AG  + AL  F +M A    P++  Y  ++  L
Sbjct: 451 DRAGHWRRALTAFEQMKAHNCRPDSVVYNTIVGAL 485



 Score = 50.4 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 51/197 (25%), Positives = 84/197 (42%), Gaps = 43/197 (21%)

Query: 72  RNLQEIFHKMRTEGLTN--------NAVKMFDALSKDGLTHE---ALQLFAQIKDKGHMP 120
           R  QE+F  +R  GL +        N +     +S+ G   +   AL+L A+++ +G   
Sbjct: 171 RRAQELFDWLR--GLDDSHDLYPLCNTMTYTTMISQCGTQQQLRRALELVAEMRSRGIQC 228

Query: 121 DVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK--GLAAAADGNAKIL 178
           +V  ++A++       +   AL V+ +MLA G  PN  TY  LI   G   A +   ++L
Sbjct: 229 NVHTYSALMNVCIKGNELDLALDVYRQMLAEGCTPNLVTYNTLIDVYGKTGAWEEAIRVL 288

Query: 179 -------------------------GDAQKYLM---EMVGKGMRPNAGTYTAVFEAFVRA 210
                                    G AQ+ L     M+  G +P A TYTA+  A+ + 
Sbjct: 289 DALERQGIDPEIRTYNTVIIACNMSGQAQEALRIYERMLAAGAQPTATTYTALISAYGKN 348

Query: 211 QKVDEARGLLQQMKAKG 227
            ++D A  + Q M  +G
Sbjct: 349 GQLDRALQIFQDMVRRG 365



 Score = 42.4 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 68/154 (44%), Gaps = 11/154 (7%)

Query: 93  MFDALSKDGLTHEALQLFAQIK--DKGH----MPDVVAHTAVIEAYASAGQGKEALRVFM 146
           +   L+K G    A +LF  ++  D  H    + + + +T +I    +  Q + AL +  
Sbjct: 160 LLKELNKSGHVRRAQELFDWLRGLDDSHDLYPLCNTMTYTTMISQCGTQQQLRRALELVA 219

Query: 147 RMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEA 206
            M + G+  N +TY+ L+        GN   L  A     +M+ +G  PN  TY  + + 
Sbjct: 220 EMRSRGIQCNVHTYSALMN---VCIKGNE--LDLALDVYRQMLAEGCTPNLVTYNTLIDV 274

Query: 207 FVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
           + +    +EA  +L  ++ +G  P+ +     +I
Sbjct: 275 YGKTGAWEEAIRVLDALERQGIDPEIRTYNTVII 308


>gi|302781572|ref|XP_002972560.1| hypothetical protein SELMODRAFT_32515 [Selaginella moellendorffii]
 gi|300160027|gb|EFJ26646.1| hypothetical protein SELMODRAFT_32515 [Selaginella moellendorffii]
          Length = 341

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/126 (34%), Positives = 67/126 (53%), Gaps = 5/126 (3%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A +LF ++ DKGH P  V +T VI+A       ++A +V   M  +G A +  TY +LI 
Sbjct: 132 AFRLFEEMVDKGHTPTSVTYTVVIDALLRVKMDEQAQKVLDLMHENGCAFDLVTYNMLIN 191

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
             A A      ++  A    +EM  +G  P+  TY +V + F +A KV+EA  L  +MKA
Sbjct: 192 RFAKAG-----MMDKAMDLFVEMPTRGCIPDVVTYNSVVDGFCKAGKVEEANKLFAEMKA 246

Query: 226 KGFVPD 231
           +G  P+
Sbjct: 247 RGIFPN 252



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 81/160 (50%), Gaps = 9/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           Q++   M   G   + V    + +  +K G+  +A+ LF ++  +G +PDVV + +V++ 
Sbjct: 168 QKVLDLMHENGCAFDLVTYNMLINRFAKAGMMDKAMDLFVEMPTRGCIPDVVTYNSVVDG 227

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +  AG+ +EA ++F  M A G+ PN  TY  +      A       + DA  YL+EM  +
Sbjct: 228 FCKAGKVEEANKLFAEMKARGIFPNGRTYTSITDACLKAGR-----MQDAHAYLVEMRKE 282

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G+  +A +Y A+     +  K      LL++M  KGF P+
Sbjct: 283 GL-VDAISYVALISTICKLGKGKLGFQLLREMLEKGFKPN 321



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 80/156 (51%), Gaps = 8/156 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M  +G T  +V    + DAL +  +  +A ++   + + G   D+V +  +I  +A
Sbjct: 135 LFEEMVDKGHTPTSVTYTVVIDALLRVKMDEQAQKVLDLMHENGCAFDLVTYNMLINRFA 194

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG   +A+ +F+ M   G  P+  TY  ++ G   A       + +A K   EM  +G+
Sbjct: 195 KAGMMDKAMDLFVEMPTRGCIPDVVTYNSVVDGFCKAGK-----VEEANKLFAEMKARGI 249

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFV 229
            PN  TYT++ +A ++A ++ +A   L +M+ +G V
Sbjct: 250 FPNGRTYTSITDACLKAGRMQDAHAYLVEMRKEGLV 285



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 61/135 (45%), Gaps = 1/135 (0%)

Query: 97  LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
           L K G   EAL L   +      PD+  +  +I A    G+ ++A  +   M A     +
Sbjct: 49  LCKHGKEKEALDLLHSMATTSCAPDIYTYNILINALCKVGRLEDAQGLVEMMQARDCPTD 108

Query: 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
             TY  LI GL    +G  ++   A +   EMV KG  P + TYT V +A +R +  ++A
Sbjct: 109 IVTYNTLIHGLCRKGNGRFRV-ERAFRLFEEMVDKGHTPTSVTYTVVIDALLRVKMDEQA 167

Query: 217 RGLLQQMKAKGFVPD 231
           + +L  M   G   D
Sbjct: 168 QKVLDLMHENGCAFD 182



 Score = 41.6 bits (96), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 35/167 (20%), Positives = 68/167 (40%), Gaps = 14/167 (8%)

Query: 10  LLHSPSPKRSLRITNTRVN-----ATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKKVV 64
           L+H       L   N  +N       + +++    + PT+  +          D F K  
Sbjct: 173 LMHENGCAFDLVTYNMLINRFAKAGMMDKAMDLFVEMPTRGCIPDVVTYNSVVDGFCKAG 232

Query: 65  DEEPTDPRNLQEIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPD 121
             E  +     ++F +M+  G+  N      + DA  K G   +A     +++ +G + D
Sbjct: 233 KVEEAN-----KLFAEMKARGIFPNGRTYTSITDACLKAGRMQDAHAYLVEMRKEG-LVD 286

Query: 122 VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
            +++ A+I      G+GK   ++   ML  G  PN  T+ V+ + L+
Sbjct: 287 AISYVALISTICKLGKGKLGFQLLREMLEKGFKPNLVTFNVVFEALS 333


>gi|255660894|gb|ACU25616.1| pentatricopeptide repeat-containing protein [Glandularia flava]
          Length = 481

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 12/168 (7%)

Query: 78  FHKMRTEGL-----TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           F+KM +EG+     T N   M       G      + F  +K +   PDVV +  +I  Y
Sbjct: 138 FNKMLSEGIEPTRHTFNV--MIWGFFLSGKVETXNRFFEDMKSREISPDVVTYNTMINGY 195

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               + +EA + F+ M    + P   TY  LIKG  +        + DA + + EM G G
Sbjct: 196 YRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQ-----VDDALRLVEEMKGFG 250

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
           ++PNA TY+ +      A+K+ EAR +L++M  K   P + ++   LI
Sbjct: 251 IKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLI 298



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 82/171 (47%), Gaps = 30/171 (17%)

Query: 91  VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           V M D+  K G+  E++++F ++++ G    + ++ A+ +     G+   A R F +ML+
Sbjct: 84  VMMIDSYGKQGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLS 143

Query: 151 SGVAPNAYTYAVLIKGLAAAA----------------------------DGNAKI--LGD 180
            G+ P  +T+ V+I G   +                             +G  ++  + +
Sbjct: 144 EGIEPTRHTFNVMIWGFFLSGKVETXNRFFEDMKSREISPDVVTYNTMINGYYRVKKMEE 203

Query: 181 AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           A+KY +EM G+ + P   TYT + + +V   +VD+A  L+++MK  G  P+
Sbjct: 204 AEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPN 254



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 82/169 (48%), Gaps = 10/169 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
            F  M++  ++ + V    M +   +     EA + F ++K +   P VV +T +I+ Y 
Sbjct: 172 FFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYV 231

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
           S  Q  +ALR+   M   G+ PNA TY+ L+ GL      NA+ + +A+  L EM+ K +
Sbjct: 232 SVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLC-----NAEKMSEARVILKEMMDKYL 286

Query: 194 RP-NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
            P +   +  +  +  ++  +D A  +L+ M  +  VP E      LI+
Sbjct: 287 APTDNSIFMRLISSHCKSGNLDAAADVLKAM-IRLSVPTEAGHYGVLIE 334


>gi|255684866|gb|ACU27922.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684900|gb|ACU27939.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684902|gb|ACU27940.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684904|gb|ACU27941.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684906|gb|ACU27942.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684912|gb|ACU27945.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684916|gb|ACU27947.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684920|gb|ACU27949.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684924|gb|ACU27951.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684926|gb|ACU27952.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684928|gb|ACU27953.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684954|gb|ACU27966.1| At1g03560-like protein [Arabidopsis thaliana]
 gi|255684960|gb|ACU27969.1| At1g03560-like protein [Arabidopsis thaliana]
          Length = 193

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 72/132 (54%), Gaps = 5/132 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ D+G  PDVV ++ V+      G+ +EAL  F      G
Sbjct: 20  LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDG 79

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +A N+  Y+ LI GL     G A  + +A++   EM  KG   ++  Y A+ +AF + +K
Sbjct: 80  LAINSMFYSSLIDGL-----GKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRK 134

Query: 213 VDEARGLLQQMK 224
           VDEA  L ++M+
Sbjct: 135 VDEAIALFKRME 146



 Score = 39.3 bits (90), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 27/44 (61%)

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           M+ KG +PN   YT + + + ++  V++A  LL +M  +GF PD
Sbjct: 5   MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPD 48


>gi|224083888|ref|XP_002307160.1| predicted protein [Populus trichocarpa]
 gi|222856609|gb|EEE94156.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEG---LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  KMR  G      ++  +   L K G   EA +    + ++G  PD+VA++A ++   
Sbjct: 416 LLKKMRIHGHVPWIKHSTSLVKELCKHGKEVEACKFLVDMAEEGFQPDIVAYSACLDGLI 475

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
              +  +AL++F  + A G  P+   Y +LIKGL        + + +AQ  L EM  KG+
Sbjct: 476 KIQEVDQALKLFQDICAQGYCPDVIAYNILIKGLC-----KTQRIAEAQNLLHEMEEKGL 530

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            P+A TY  + +   +   ++EA   L  M  K   P+
Sbjct: 531 VPSAVTYNTLIDGLCKTDHLEEAMLFLSMMIEKEREPN 568



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 76/160 (47%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           Q + H+M  +GL  +AV    + D L K     EA+   + + +K   P+V+ ++ +I  
Sbjct: 519 QNLLHEMEEKGLVPSAVTYNTLIDGLCKTDHLEEAMLFLSMMIEKEREPNVITYSTLING 578

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
             +AG+  +AL ++  M   G  P++  Y   I GL+     N     +A  YL EM  +
Sbjct: 579 LCNAGRPDDALVLWNEMGRKGCTPSSIAYMAFIHGLSNCGRPN-----EALVYLREMEER 633

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            M+P+   Y  +  AF+       A  +LQ+M  KG  PD
Sbjct: 634 EMKPDTYVYVGLLNAFLVDSNQPLAFEILQEMVDKGKFPD 673



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 69/157 (43%), Gaps = 8/157 (5%)

Query: 81  MRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ 137
           M  EG   + V      D L K     +AL+LF  I  +G+ PDV+A+  +I+      +
Sbjct: 455 MAEEGFQPDIVAYSACLDGLIKIQEVDQALKLFQDICAQGYCPDVIAYNILIKGLCKTQR 514

Query: 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA 197
             EA  +   M   G+ P+A TY  LI GL          L +A  +L  M+ K   PN 
Sbjct: 515 IAEAQNLLHEMEEKGLVPSAVTYNTLIDGLCKTDH-----LEEAMLFLSMMIEKEREPNV 569

Query: 198 GTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
            TY+ +      A + D+A  L  +M  KG  P   A
Sbjct: 570 ITYSTLINGLCNAGRPDDALVLWNEMGRKGCTPSSIA 606



 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 75/169 (44%), Gaps = 30/169 (17%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K G    A+ LF  +   G  PD++ +  +I+   ++ + +E+  +   M  SG
Sbjct: 330 VINGLIKTGDLDLAVGLFRDMARIGCKPDLLLYNNLIDGLCTSNRLQESCGLLQEMEESG 389

Query: 153 VAPNAYTYAVLIKGLAAAADGNA--------KILG----------------------DAQ 182
           + P ++T   +   L    D +         +I G                      +A 
Sbjct: 390 IEPTSFTNNCIFGCLCRRHDISGALHLLKKMRIHGHVPWIKHSTSLVKELCKHGKEVEAC 449

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           K+L++M  +G +P+   Y+A  +  ++ Q+VD+A  L Q + A+G+ PD
Sbjct: 450 KFLVDMAEEGFQPDIVAYSACLDGLIKIQEVDQALKLFQDICAQGYCPD 498



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 67/159 (42%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F  +  +G   + +    +   L K     EA  L  ++++KG +P  V +  +I+  
Sbjct: 485 KLFQDICAQGYCPDVIAYNILIKGLCKTQRIAEAQNLLHEMEEKGLVPSAVTYNTLIDGL 544

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
                 +EA+     M+     PN  TY+ LI GL  A   +     DA     EM  KG
Sbjct: 545 CKTDHLEEAMLFLSMMIEKEREPNVITYSTLINGLCNAGRPD-----DALVLWNEMGRKG 599

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             P++  Y A         + +EA   L++M+ +   PD
Sbjct: 600 CTPSSIAYMAFIHGLSNCGRPNEALVYLREMEEREMKPD 638



 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 68/140 (48%), Gaps = 8/140 (5%)

Query: 93  MFDALSKDGLTHEALQL-FAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
           + + LSK  +  + L++   ++ D G   D    T V++ Y +  +  +AL VF  +   
Sbjct: 72  LLEVLSK-SICIDLLEMRLKEMHDHGWGFDKYTLTPVLQVYCNMAEFDKALDVFNEIHDR 130

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           G   + Y +++L+  LA +  G       A + +  M  K +R N  T+ ++   FV+  
Sbjct: 131 GWV-DEYVFSILV--LAFSKWGKVD---KACELIETMEEKNVRLNKKTFCSLIYGFVKES 184

Query: 212 KVDEARGLLQQMKAKGFVPD 231
           +VD+A  L  +MK  GF PD
Sbjct: 185 RVDKALHLFDKMKKSGFTPD 204



 Score = 42.7 bits (99), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 77/182 (42%), Gaps = 42/182 (23%)

Query: 77  IFHKMRTEGLTNNAVKMFD------ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           +F KM+  G T + + ++D       ++KD    +AL L++++K     PDV   T +I 
Sbjct: 192 LFDKMKKSGFTPD-ISLYDVIIGGLCVNKD--VKKALCLYSEMKGFKIQPDVKIVTKLIS 248

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYT--YAVLIKGLA-------------AAADGNA 175
           +++     +E L  F   +   + P A T  Y  ++  L              A   GN 
Sbjct: 249 SFSK----EEELTCFFEEMHEDMDPKASTLLYNSVLNSLVDNGSVHKAYHLLQAITIGNC 304

Query: 176 KILGDAQKYLMEMVGKGMR------PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFV 229
             +GD +      +GK  R      PN+ T++ V    ++   +D A GL + M   G  
Sbjct: 305 --IGDGE------IGKLFRGKAMVPPNSTTFSIVINGLIKTGDLDLAVGLFRDMARIGCK 356

Query: 230 PD 231
           PD
Sbjct: 357 PD 358


>gi|260780324|gb|ACX50708.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780342|gb|ACX50717.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780358|gb|ACX50725.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780388|gb|ACX50740.1| AT1G03560-like protein [Capsella bursa-pastoris]
          Length = 199

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 75/146 (51%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K G  +E   +F  +  KG  P+V  +T +I+ YA +G  ++A+R+  RM+  G  P
Sbjct: 26  GLCKQGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKP 85

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY+V++ GL      N ++  +A  Y       G+  N+  Y+++ +   +A ++DE
Sbjct: 86  DVVTYSVVVNGLCK----NGRV-EEALDYFQTCRFNGLAINSMFYSSLIDGLGKAGRIDE 140

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      ALID
Sbjct: 141 AERLFEEMSEKGCTRDSYCYN-ALID 165



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 72/134 (53%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ D+G  PDVV ++ V+      G+ +EAL  F     +G
Sbjct: 58  LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNG 117

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +A N+  Y+ LI GL     G A  + +A++   EM  KG   ++  Y A+ +A  +  K
Sbjct: 118 LAINSMFYSSLIDGL-----GKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGK 172

Query: 213 VDEARGLLQQMKAK 226
           VDEA  L ++M+ +
Sbjct: 173 VDEAMTLFKRMEEE 186



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 6/143 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
            + L+ ++ +KG        + VI      G+  E   VF  M+  G  PN   Y VLI 
Sbjct: 1   CVALYQEMDEKGIQVPPHVFSLVIGGLCKQGKLNEGYAVFENMIRKGSKPNVAIYTVLID 60

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G A +       + DA + L  M+ +G +P+  TY+ V     +  +V+EA    Q  + 
Sbjct: 61  GYAKSGS-----VEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRF 115

Query: 226 KGFVPDEKAVKEALIDKRGQGFR 248
            G   +      +LID  G+  R
Sbjct: 116 NGLAIN-SMFYSSLIDGLGKAGR 137


>gi|259490098|ref|NP_001159276.1| uncharacterized protein LOC100304366 [Zea mays]
 gi|223943161|gb|ACN25664.1| unknown [Zea mays]
 gi|414590092|tpg|DAA40663.1| TPA: hypothetical protein ZEAMMB73_658820 [Zea mays]
 gi|414590093|tpg|DAA40664.1| TPA: hypothetical protein ZEAMMB73_658820 [Zea mays]
          Length = 535

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 46/133 (34%), Positives = 67/133 (50%), Gaps = 6/133 (4%)

Query: 99  KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAY 158
           K  L  EA  LF   +     PDVV +TAV+ A+  AG+  EA RVF  M  SG+ PN Y
Sbjct: 218 KKRLASEAQALFDSCR-TVFTPDVVLYTAVVHAWCRAGRLDEAERVFTEMQQSGIMPNVY 276

Query: 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218
           TY  +I  +  A       +  AQ+ L +M+  G  PN  T+ A+  + V+A + ++   
Sbjct: 277 TYTAVIDAMYRAGQ-----VPRAQELLCQMIDSGCPPNTTTFNAIMRSHVKAGRSEQVLQ 331

Query: 219 LLQQMKAKGFVPD 231
           +  QM+     PD
Sbjct: 332 VHNQMQQLRCEPD 344



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 6/160 (3%)

Query: 75  QEIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +F +M+  G+  N      + DA+ + G    A +L  Q+ D G  P+     A++ +
Sbjct: 260 ERVFTEMQQSGIMPNVYTYTAVIDAMYRAGQVPRAQELLCQMIDSGCPPNTTTFNAIMRS 319

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +  AG+ ++ L+V  +M      P+  TY  LI+       GN   L  A K L +M  K
Sbjct: 320 HVKAGRSEQVLQVHNQMQQLRCEPDVITYNFLIETHCGKGQGN---LDAALKVLDKMTAK 376

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              P+  T+  +F   +    +  A  L ++M+     P+
Sbjct: 377 KCVPDCHTFNPMFRLLLVLGNIGAAHKLYEKMRELQCKPN 416



 Score = 45.4 bits (106), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 68/150 (45%), Gaps = 8/150 (5%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           MF  L   G    A +L+ ++++    P+VV +  ++  +         LR+   M A G
Sbjct: 388 MFRLLLVLGNIGAAHKLYEKMRELQCKPNVVTYNCLLRLFNKEKSMDMVLRMKKDMDAEG 447

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV-GKGMRPNAGTYTAVFEAFVRAQ 211
           + PN +TYA LI+  A    GN K    A   L EM+  K  +P+      V     +A 
Sbjct: 448 IEPNMHTYAALIE--AFCGRGNWK---RAHTTLKEMIEEKSFKPSKQVRDMVLVLLRKAG 502

Query: 212 KVDEARGLLQQMKAKGFV--PDEKAVKEAL 239
           ++ +   L++ M  +GF+  P   A+  AL
Sbjct: 503 QLKKHEELVELMVDRGFISQPPNDALWSAL 532


>gi|21553611|gb|AAM62704.1| unknown [Arabidopsis thaliana]
          Length = 463

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 72/140 (51%), Gaps = 5/140 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D +       EA+ L +++ + G  PD   +  +++ + +  +G EA+ V+ +M   G
Sbjct: 236 LIDNVCNSKNLREAMYLVSKLGNAGFKPDCFLYNTIMKGFCTLSKGSEAVGVYKKMKEEG 295

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V P+  TY  LI GL+ A       + +A+ YL  MV  G  P+  TYT++     R  +
Sbjct: 296 VEPDQITYNTLIFGLSKAGR-----VEEARMYLKTMVDAGYEPDTATYTSLMNGMCRKGE 350

Query: 213 VDEARGLLQQMKAKGFVPDE 232
              A  LL++M+A+G  P++
Sbjct: 351 SLGALSLLEEMEARGCAPND 370



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 8/142 (5%)

Query: 86  LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVF 145
           L N  +K F  LSK     EA+ ++ ++K++G  PD + +  +I   + AG+ +EA    
Sbjct: 267 LYNTIMKGFCTLSKGS---EAVGVYKKMKEEGVEPDQITYNTLIFGLSKAGRVEEARMYL 323

Query: 146 MRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFE 205
             M+ +G  P+  TY  L+ G+    +     LG A   L EM  +G  PN  TY  +  
Sbjct: 324 KTMVDAGYEPDTATYTSLMNGMCRKGES----LG-ALSLLEEMEARGCAPNDCTYNTLLH 378

Query: 206 AFVRAQKVDEARGLLQQMKAKG 227
              +A+ +D+   L + MK+ G
Sbjct: 379 GLCKARLMDKGMELYEMMKSSG 400



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 10/144 (6%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           ++ KM+ EG+  + +    +   LSK G   EA      + D G+ PD   +T+++    
Sbjct: 287 VYKKMKEEGVEPDQITYNTLIFGLSKAGRVEEARMYLKTMVDAGYEPDTATYTSLMNGMC 346

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV-GKG 192
             G+   AL +   M A G APN  TY  L+ GL  A       L D    L EM+   G
Sbjct: 347 RKGESLGALSLLEEMEARGCAPNDCTYNTLLHGLCKAR------LMDKGMELYEMMKSSG 400

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEA 216
           ++  +  Y  +  + V++ KV EA
Sbjct: 401 VKLESNGYATLVRSLVKSGKVAEA 424



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 60/130 (46%), Gaps = 6/130 (4%)

Query: 105 EALQLFAQIKDKGHMP-DVVAHTAVIEAYASAGQGKEALRVFMRMLAS--GVAPNAYTYA 161
           +A  LF  I     +P D+  H +V+++YAS     + ++ F  ++ S     P   T+ 
Sbjct: 67  DAKSLFNSIAATSRIPLDLKFHNSVLQSYASIAVVDDTVKFFQHIMKSQPNFRPGRSTFL 126

Query: 162 VLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221
           +L+     A D +   + +  + L  MV  G+ P+  T      +     +VDEA+ L++
Sbjct: 127 ILLSHACRAPDSS---ISNVHRVLNLMVNNGLEPDQVTTDIAVRSLCETGRVDEAKDLMK 183

Query: 222 QMKAKGFVPD 231
           ++  K   PD
Sbjct: 184 ELTEKHSPPD 193



 Score = 47.0 bits (110), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 70/167 (41%), Gaps = 15/167 (8%)

Query: 73  NLQEIFHKMRTEGL------TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           N+  + + M   GL      T+ AV+   +L + G   EA  L  ++ +K   PD   + 
Sbjct: 142 NVHRVLNLMVNNGLEPDQVTTDIAVR---SLCETGRVDEAKDLMKELTEKHSPPDTYTYN 198

Query: 127 AVIEAYASAGQGKEALRVFMRMLAS-GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185
            +++                 M     V P+  ++ +LI  +      N+K L +A   +
Sbjct: 199 FLLKHLCKCKDLHVVYEFVDEMRDDFDVKPDLVSFTILIDNVC-----NSKNLREAMYLV 253

Query: 186 MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
            ++   G +P+   Y  + + F    K  EA G+ ++MK +G  PD+
Sbjct: 254 SKLGNAGFKPDCFLYNTIMKGFCTLSKGSEAVGVYKKMKEEGVEPDQ 300


>gi|15221674|ref|NP_176496.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169918|sp|Q9CAN5.1|PPR98_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63080, mitochondrial; Flags: Precursor
 gi|12323262|gb|AAG51614.1|AC010795_18 unknown protein; 41955-40111 [Arabidopsis thaliana]
 gi|332195930|gb|AEE34051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 614

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 77/165 (46%), Gaps = 5/165 (3%)

Query: 67  EPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           EP    NL     K + E        + D+L K     +AL LF ++ +KG  PDV  ++
Sbjct: 220 EPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYS 279

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
           ++I    + G+  +A R+   ML   + PN  T+  LI   A         L +A+K   
Sbjct: 280 SLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGK-----LIEAEKLFD 334

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           EM+ + + PN  TY ++   F    ++DEA+ +   M +K  +PD
Sbjct: 335 EMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPD 379



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DA +K+G   EA +LF ++  +   P++V + ++I  +    +  EA ++F  M++  
Sbjct: 316 LIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKD 375

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  TY  LI G        AK + D  +   +M  +G+  N  TYT +   F +A  
Sbjct: 376 CLPDVVTYNTLINGFC-----KAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASD 430

Query: 213 VDEARGLLQQMKAKGFVPD 231
            D A+ + +QM + G  P+
Sbjct: 431 CDNAQMVFKQMVSDGVHPN 449



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K G    AL L  +++      DVV ++ VI++        +AL +F  M   G
Sbjct: 211 VINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKG 270

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+ +TY+ LI  L      N     DA + L +M+ + + PN  T+ ++ +AF +  K
Sbjct: 271 IRPDVFTYSSLISCLC-----NYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGK 325

Query: 213 VDEARGLLQQMKAKGFVPD 231
           + EA  L  +M  +   P+
Sbjct: 326 LIEAEKLFDEMIQRSIDPN 344



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 88/193 (45%), Gaps = 12/193 (6%)

Query: 67  EPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVV 123
           + +D  N Q +F +M ++G+  N +    + D L K+G   +A+ +F  ++     PD+ 
Sbjct: 427 QASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIY 486

Query: 124 AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQK 183
            +  + E    AG+ ++   +F  +   GV P+   Y  +I G          +  +A  
Sbjct: 487 TYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKG-----LKEEAYT 541

Query: 184 YLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA---VKEALI 240
             ++M   G  P++GTY  +  A +R      +  L+++M++  F  D      V + L 
Sbjct: 542 LFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGDASTYGLVTDMLH 601

Query: 241 DKR-GQGFRGVIN 252
           D R  +GF  V++
Sbjct: 602 DGRLDKGFLEVLS 614



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 10/161 (6%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           Q+IF  M ++    + V    + +   K     + ++LF  +  +G + + V +T +I  
Sbjct: 365 QQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHG 424

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +  A     A  VF +M++ GV PN  TY  L+ GL      N K+  +    + E + K
Sbjct: 425 FFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCK----NGKL--EKAMVVFEYLQK 478

Query: 192 G-MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             M P+  TY  + E   +A KV++   L   +  KG  PD
Sbjct: 479 SKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPD 519



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 10/137 (7%)

Query: 100 DGLTH-----EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           +G  H     EA+ L  Q+ + G+ PD V  T ++       +  EA+ +  RM+  G  
Sbjct: 143 NGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQ 202

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
           P+  TY  +I GL    + +      A   L +M    +  +   Y+ V ++  + + VD
Sbjct: 203 PDLVTYGAVINGLCKRGEPDL-----ALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVD 257

Query: 215 EARGLLQQMKAKGFVPD 231
           +A  L  +M  KG  PD
Sbjct: 258 DALNLFTEMDNKGIRPD 274



 Score = 53.5 bits (127), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 9/141 (6%)

Query: 95  DALSKDGLTH----EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           + LS++ L H    EA+ LF ++      P +V  + ++ A A   +    +    +M  
Sbjct: 34  EKLSRNALLHLKLDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEI 93

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
            GV+ N YTY ++I  L   +      L  A   L +M+  G  P+  T  ++   F   
Sbjct: 94  LGVSHNLYTYNIMINCLCRRSQ-----LSFALAILGKMMKLGYGPSIVTLNSLLNGFCHG 148

Query: 211 QKVDEARGLLQQMKAKGFVPD 231
            ++ EA  L+ QM   G+ PD
Sbjct: 149 NRISEAVALVDQMVEMGYQPD 169


>gi|359485438|ref|XP_003633275.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 572

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 79/163 (48%), Gaps = 8/163 (4%)

Query: 72  RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R+   +FH+M   G   + V    +FD L K+    EA+ L   I+     PD+  ++ V
Sbjct: 386 RDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIV 445

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           ++    AG+ + A  +F ++ + G+ P+  TY ++I GL         +L +A K   EM
Sbjct: 446 MDGMCRAGELEAARDLFSKLSSKGLHPDVRTYTIMINGLCQQG-----LLAEASKLFGEM 500

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              G  PNA TY  +   F+R  +   A  L Q+M ++GF  D
Sbjct: 501 DENGCSPNACTYNLITRGFLRNNETLRAIQLFQEMLSRGFSID 543



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 78/159 (49%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F KM  EG   + +    + + L K G T  A++    ++ +   P VV ++ +I++ 
Sbjct: 145 QLFDKMTGEGFQPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSL 204

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               Q  EAL +F  MLA G++PN +TY+ LI GL     G+ K   +A +    M+ + 
Sbjct: 205 CKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCIL--GHWK---EAIRLFYAMIHRK 259

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + P+  T+  + +A  +   V +A  ++  M      PD
Sbjct: 260 IMPDQLTFNTLVDALCKEGMVVKAHYVVDVMIQSDLKPD 298



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/216 (22%), Positives = 95/216 (43%), Gaps = 10/216 (4%)

Query: 47  VNTKSKLPPPYDPFKKVVDEEP--TDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDG 101
           V  +S L P    +  ++D     ++      +F  M  +G   + +    + +   K  
Sbjct: 289 VMIQSDLKPDVVTYNSLMDGHCLRSEMGKTVNVFDTMVRKGCVPSVISYTTLINGYCKIQ 348

Query: 102 LTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYA 161
           +  +A+ LF ++  +G +PD V +  +I      G+ ++A+ +F  M+  G  P+  TY 
Sbjct: 349 IMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYR 408

Query: 162 VLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221
           +L   L      N + L +A   L  + G  + P+   Y+ V +   RA +++ AR L  
Sbjct: 409 ILFDYLCK----NHR-LAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFS 463

Query: 222 QMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257
           ++ +KG  PD +     +     QG     + LFG+
Sbjct: 464 KLSSKGLHPDVRTYTIMINGLCQQGLLAEASKLFGE 499



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 82/183 (44%), Gaps = 12/183 (6%)

Query: 55  PPYDPFKKVVDEEPTDPRNLQE---IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQ 108
           P    +  ++D    D R L E   +F  M  +G++ N      +   L   G   EA++
Sbjct: 192 PTVVVYSTIIDSLCKD-RQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIR 250

Query: 109 LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
           LF  +  +  MPD +    +++A    G   +A  V   M+ S + P+  TY  L+ G  
Sbjct: 251 LFYAMIHRKIMPDQLTFNTLVDALCKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHC 310

Query: 169 AAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
             ++     +G        MV KG  P+  +YT +   + + Q +D+A GL ++M  +G 
Sbjct: 311 LRSE-----MGKTVNVFDTMVRKGCVPSVISYTTLINGYCKIQIMDKAMGLFEEMSQQGL 365

Query: 229 VPD 231
           +PD
Sbjct: 366 IPD 368



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 78/187 (41%), Gaps = 16/187 (8%)

Query: 54  PPPYDPFKKVVDE--EPTDPRNLQEIFHKMRTEGLTNNA------VKMFDALSKDGLTHE 105
           PP    F K++           +  ++ +M + G+ +N       +  F  L++ G    
Sbjct: 51  PPSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNILINSFCHLNRLGF--- 107

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A  +   I   G+ P     T +I      G+  EAL++F +M   G  P+  TY  LI 
Sbjct: 108 AFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLIN 167

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           GL    + +  I     ++L  M  +  RP    Y+ + ++  + +++ EA  L   M A
Sbjct: 168 GLCKVGNTSTAI-----RFLRSMEQRNCRPTVVVYSTIIDSLCKDRQLTEALSLFSDMLA 222

Query: 226 KGFVPDE 232
           KG  P+ 
Sbjct: 223 KGISPNN 229



 Score = 60.1 bits (144), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 7/155 (4%)

Query: 77  IFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           I  K+  + LT N   + DAL K+G+  +A  +   +      PDVV + ++++ +    
Sbjct: 256 IHRKIMPDQLTFNT--LVDALCKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRS 313

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196
           +  + + VF  M+  G  P+  +Y  LI G         +I+  A     EM  +G+ P+
Sbjct: 314 EMGKTVNVFDTMVRKGCVPSVISYTTLINGYC-----KIQIMDKAMGLFEEMSQQGLIPD 368

Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             TY  +        ++ +A  L  +M   G +PD
Sbjct: 369 TVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPD 403



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 57/137 (41%), Gaps = 5/137 (3%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L  +G   EALQLF ++  +G  PDV+ +  +I      G    A+R    M      P
Sbjct: 133 GLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQRNCRP 192

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
               Y+ +I  L        + L +A     +M+ KG+ PN  TY+++           E
Sbjct: 193 TVVVYSTIIDSLC-----KDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKE 247

Query: 216 ARGLLQQMKAKGFVPDE 232
           A  L   M  +  +PD+
Sbjct: 248 AIRLFYAMIHRKIMPDQ 264



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 5/111 (4%)

Query: 95  DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           D + + G    A  LF+++  KG  PDV  +T +I      G   EA ++F  M  +G +
Sbjct: 447 DGMCRAGELEAARDLFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASKLFGEMDENGCS 506

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFE 205
           PNA TY ++ +G       N + L   Q +  EM+ +G   +  T T + E
Sbjct: 507 PNACTYNLITRGFLR----NNETLRAIQLF-QEMLSRGFSIDVSTTTLLVE 552



 Score = 47.8 bits (112), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 56/127 (44%), Gaps = 5/127 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +AL LF ++      P +V  + ++ +          L ++ +M + G+  N YT  +LI
Sbjct: 37  DALSLFNRMLRMRPPPSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNILI 96

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
                    +   LG A   L +++  G +P+  T+T +        K+ EA  L  +M 
Sbjct: 97  NSFC-----HLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMT 151

Query: 225 AKGFVPD 231
            +GF PD
Sbjct: 152 GEGFQPD 158


>gi|326510087|dbj|BAJ87260.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326520816|dbj|BAJ92771.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1092

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 79/166 (47%), Gaps = 10/166 (6%)

Query: 70   DPRNLQEIFHKMRTEGLTNNAVKMF----DALSKDGLTHEALQLFAQIKDKGHMPDVVAH 125
            D   + E+F  M  +G+ N  +K +    D L  DG  ++ L  F Q+ D G  PD++ +
Sbjct: 921  DTEKVCELFESMVEQGM-NPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITY 979

Query: 126  TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185
              +I     +G+ +EAL ++  M   G+APN YTY  LI  L     G A    +A K  
Sbjct: 980  NLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYL-----GKAGKAAEAGKMY 1034

Query: 186  MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             E++ KG +PN  TY A+   +  +   + A     +M   G  P+
Sbjct: 1035 EELLAKGWKPNVFTYNALIRGYSVSGSPENAFAAYGRMIVGGCRPN 1080



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 95/213 (44%), Gaps = 34/213 (15%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D R++ EI++ ++ +G  +N V      DAL + G   EAL +F ++K KG +P   ++ 
Sbjct: 326 DSRSVSEIWNALKADGYNDNVVSYTAAVDALCQVGRVDEALDVFDEMKQKGIIPQQYSYN 385

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI---------------------K 165
           ++I  +  A +   AL +F  M   G  PN YT+ + I                     K
Sbjct: 386 SLISGFLKADRFNRALELFNHMNIHGPTPNGYTHVLFINYHGKSGESLKALKRYELMKSK 445

Query: 166 GLAA-AADGNAKI--------LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
           G+      GNA +        LG A++   E+   G+ P+  TYT + +   +A   DEA
Sbjct: 446 GIVPDVVAGNAVLYGLAKTGRLGMAKRVFHELKAMGISPDNITYTMMIKCCSKASNADEA 505

Query: 217 RGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRG 249
             +  +M      PD  A+  +LID   +  RG
Sbjct: 506 MKIFAEMIENRCAPDVLAMN-SLIDMLYKAGRG 537



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 77/160 (48%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +FH+++  G++ + +    M    SK     EA+++FA++ +    PDV+A  ++I+ 
Sbjct: 471 KRVFHELKAMGISPDNITYTMMIKCCSKASNADEAMKIFAEMIENRCAPDVLAMNSLIDM 530

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              AG+G EA ++F  +    + P   TY  L+ GL    +G  K   +  + L  M   
Sbjct: 531 LYKAGRGNEAWKIFYELKEMNLEPTDCTYNTLLAGL--GREGKVK---EVMQLLEGMNSN 585

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              PN  TY  V +   +  +V+ A  +L  M   G +PD
Sbjct: 586 SFPPNIITYNTVLDCLCKNGEVNYALDMLYSMTMNGCMPD 625



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 67/136 (49%), Gaps = 5/136 (3%)

Query: 97  LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
           L + G   EA ++  +++++G  PDVV +T +I+    AG+  +A  VF +M AS   P+
Sbjct: 251 LGQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQILCDAGRLADAKDVFWKMKASDQKPD 310

Query: 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
             TY  L+     + D  +       +    +   G   N  +YTA  +A  +  +VDEA
Sbjct: 311 RVTYITLLDKCGDSGDSRS-----VSEIWNALKADGYNDNVVSYTAAVDALCQVGRVDEA 365

Query: 217 RGLLQQMKAKGFVPDE 232
             +  +MK KG +P +
Sbjct: 366 LDVFDEMKQKGIIPQQ 381



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 79/160 (49%), Gaps = 8/160 (5%)

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F+ M   G T N    V   +   K G + +AL+ +  +K KG +PDVVA  AV+   
Sbjct: 402 ELFNHMNIHGPTPNGYTHVLFINYHGKSGESLKALKRYELMKSKGIVPDVVAGNAVLYGL 461

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           A  G+   A RVF  + A G++P+  TY ++IK  + A++ +     +A K   EM+   
Sbjct: 462 AKTGRLGMAKRVFHELKAMGISPDNITYTMMIKCCSKASNAD-----EAMKIFAEMIENR 516

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
             P+     ++ +   +A + +EA  +  ++K     P +
Sbjct: 517 CAPDVLAMNSLIDMLYKAGRGNEAWKIFYELKEMNLEPTD 556



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 78/160 (48%), Gaps = 8/160 (5%)

Query: 75   QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            + +F +M   G   N      + +     G T +  +LF  + ++G  PD+ ++T VI+ 
Sbjct: 891  EALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKSYTVVIDT 950

Query: 132  YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              + G+  + L  F ++   G+ P+  TY +LI GL     G +  L +A     +M  K
Sbjct: 951  LCADGRLNDGLSYFKQLTDMGLEPDLITYNLLIHGL-----GKSGRLEEALSLYNDMEKK 1005

Query: 192  GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            G+ PN  TY ++     +A K  EA  + +++ AKG+ P+
Sbjct: 1006 GIAPNLYTYNSLILYLGKAGKAAEAGKMYEELLAKGWKPN 1045



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 81/175 (46%), Gaps = 10/175 (5%)

Query: 63  VVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM 119
           +VDE+  D    +E+F +M+  G   +      + DA+ K     + L++  ++ +KG+ 
Sbjct: 776 LVDEDLIDIA--EELFSEMKRLGCDPDEFTYHLILDAMGKSMRIEDMLKIQEEMHNKGYK 833

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
              V +  +I     +    EA+ ++ ++++ G +P   TY  L+ GL    DGN +   
Sbjct: 834 STYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGL--LKDGNIE--- 888

Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
           DA+    EM+  G  PN   Y  +   +  A   ++   L + M  +G  PD K+
Sbjct: 889 DAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKS 943



 Score = 61.2 bits (147), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 76/158 (48%), Gaps = 8/158 (5%)

Query: 87  TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFM 146
           T N +  F  L K G   EA+ ++  +   G +P V  ++ ++ A+      +  + +  
Sbjct: 173 TYNGLIYF--LVKSGFDREAMDVYKAMAADGVVPTVRTYSVLMLAFGKRRDAETVVGLLG 230

Query: 147 RMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEA 206
            M A GV PN Y+Y + I+ L     G A  L +A + L +M  +G +P+  T T + + 
Sbjct: 231 EMEARGVRPNVYSYTICIRVL-----GQAGRLEEAYRILRKMEEEGCKPDVVTNTVLIQI 285

Query: 207 FVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRG 244
              A ++ +A+ +  +MKA    PD +     L+DK G
Sbjct: 286 LCDAGRLADAKDVFWKMKASDQKPD-RVTYITLLDKCG 322



 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 76/162 (46%), Gaps = 8/162 (4%)

Query: 73  NLQEIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           ++ ++F  M+ + +  N      +F A+  +G    A      +K+ G + +   +  +I
Sbjct: 119 DVAQVFDLMQRQIIKANVGTFCTVFGAVGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLI 178

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
                +G  +EA+ V+  M A GV P   TY+VL+       D    +       L EM 
Sbjct: 179 YFLVKSGFDREAMDVYKAMAADGVVPTVRTYSVLMLAFGKRRDAETVV-----GLLGEME 233

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +G+RPN  +YT       +A +++EA  +L++M+ +G  PD
Sbjct: 234 ARGVRPNVYSYTICIRVLGQAGRLEEAYRILRKMEEEGCKPD 275



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +++F KM+      + V    + D     G +    +++  +K  G+  +VV++TA ++A
Sbjct: 296 KDVFWKMKASDQKPDRVTYITLLDKCGDSGDSRSVSEIWNALKADGYNDNVVSYTAAVDA 355

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G+  EAL VF  M   G+ P  Y+Y  LI G   A   N      A +    M   
Sbjct: 356 LCQVGRVDEALDVFDEMKQKGIIPQQYSYNSLISGFLKADRFNR-----ALELFNHMNIH 410

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G  PN  T+        ++ +  +A    + MK+KG VPD
Sbjct: 411 GPTPNGYTHVLFINYHGKSGESLKALKRYELMKSKGIVPD 450



 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 7/92 (7%)

Query: 77   IFHKMRTEGL-----TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            +++ M  +G+     T N++ ++  L K G   EA +++ ++  KG  P+V  + A+I  
Sbjct: 998  LYNDMEKKGIAPNLYTYNSLILY--LGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRG 1055

Query: 132  YASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
            Y+ +G  + A   + RM+  G  PN+ TY  L
Sbjct: 1056 YSVSGSPENAFAAYGRMIVGGCRPNSSTYMQL 1087



 Score = 44.3 bits (103), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 32/167 (19%), Positives = 69/167 (41%), Gaps = 12/167 (7%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +IF++++   L         +   L ++G   E +QL   +      P+++ +  V++  
Sbjct: 542 KIFYELKEMNLEPTDCTYNTLLAGLGREGKVKEVMQLLEGMNSNSFPPNIITYNTVLDCL 601

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+   AL +   M  +G  P+  +Y  ++ GL            D   ++   + K 
Sbjct: 602 CKNGEVNYALDMLYSMTMNGCMPDLSSYNTVMYGLVKEDR------LDEAFWMFCQMKKV 655

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
           + P+  T   +  +FVR+  + EA   L  ++     PD K  + ++
Sbjct: 656 LAPDYATVCTILPSFVRSGLMKEA---LHTVREYILQPDSKVDRSSV 699


>gi|255660798|gb|ACU25568.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
          Length = 418

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 109/237 (45%), Gaps = 15/237 (6%)

Query: 2   AATAILRWLLHSPSPKRS-LRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPF 60
           +A+A+   +L +   +RS + + +  + A L+      + +  +  +  + K   P+D  
Sbjct: 47  SASAVFAAILETKGTQRSDIYVFSGLITAYLESGFLRDAIECYR--LTKEHKFRVPFDTC 104

Query: 61  KKVVDEEPTDPRNLQEI--FHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIK 114
           +KV+ E     +  + +  F++   E     ++  F+ L     K+G    A  +F  I 
Sbjct: 105 RKVL-EHLMKLKYFKLVWGFYEENLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAIT 163

Query: 115 DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174
             G  P VV+   ++  Y   G   E  R+   M ASGV P+ YTY+VLI GL   +   
Sbjct: 164 KWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESK-- 221

Query: 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              + DA     EM+ KG+ PN  T+T + +   +  +VD A  + +QM ++   PD
Sbjct: 222 ---MDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 275



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 84/201 (41%), Gaps = 35/201 (17%)

Query: 63  VVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM 119
           +  E   D  N+  +F +M  +GL  N V    + D   K+G    A++++ Q+  +   
Sbjct: 216 LCKESKMDDANV--LFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 273

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD------- 172
           PD++ +  +I      G  K+A  +   M+  G+ P+  TY  LI G     D       
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKITYTTLIDGNCKEGDLETAFEY 333

Query: 173 ---------------GNAKILG--------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
                            A I G        DA+K L EM+  G++P  GTYT +   F +
Sbjct: 334 RKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCK 393

Query: 210 AQKVDEARGLLQQMKAKGFVP 230
              V     LL++M+  G++P
Sbjct: 394 KGDVWTGSKLLKEMQRDGYMP 414


>gi|341606829|gb|AEK83517.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
          Length = 208

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 75/146 (51%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+G  +E   +F  +  KG  P+V  +T +I+ YA +G  ++A+R+  RM+  G  P
Sbjct: 23  GLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKP 82

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY+V++ GL      N ++  +A  Y       G   N+  Y+++ +   +A ++DE
Sbjct: 83  DVVTYSVVVNGLCK----NGRV-EEALDYFQTCRFNGXAINSMFYSSLIDGLGKAGRIDE 137

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      ALID
Sbjct: 138 AERLFEEMSEKGCTRDSYCYN-ALID 162



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 71/134 (52%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ D+G  PDVV ++ V+      G+ +EAL  F     +G
Sbjct: 55  LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNG 114

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            A N+  Y+ LI GL     G A  + +A++   EM  KG   ++  Y A+ +A  +  K
Sbjct: 115 XAINSMFYSSLIDGL-----GKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGK 169

Query: 213 VDEARGLLQQMKAK 226
           VBEA  L ++M+ +
Sbjct: 170 VBEAMTLFKRMEEE 183



 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 60/140 (42%), Gaps = 6/140 (4%)

Query: 109 LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
           L+ ++ +KG        + VI      G+  E   VF  M+  G  PN   Y VLI G A
Sbjct: 1   LYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYA 60

Query: 169 AAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
            +       + DA + L  M+ +G +P+  TY+ V     +  +V+EA    Q  +  G 
Sbjct: 61  KSGS-----VEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNGX 115

Query: 229 VPDEKAVKEALIDKRGQGFR 248
             +      +LID  G+  R
Sbjct: 116 AIN-SMFYSSLIDGLGKAGR 134


>gi|260780314|gb|ACX50703.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780316|gb|ACX50704.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780320|gb|ACX50706.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780322|gb|ACX50707.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780326|gb|ACX50709.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780328|gb|ACX50710.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780334|gb|ACX50713.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780336|gb|ACX50714.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780350|gb|ACX50721.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780354|gb|ACX50723.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780356|gb|ACX50724.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780360|gb|ACX50726.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780362|gb|ACX50727.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780364|gb|ACX50728.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780366|gb|ACX50729.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780368|gb|ACX50730.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780370|gb|ACX50731.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780372|gb|ACX50732.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780374|gb|ACX50733.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780376|gb|ACX50734.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780378|gb|ACX50735.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780380|gb|ACX50736.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780382|gb|ACX50737.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780384|gb|ACX50738.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780386|gb|ACX50739.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780390|gb|ACX50741.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780392|gb|ACX50742.1| AT1G03560-like protein [Capsella bursa-pastoris]
          Length = 199

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 75/146 (51%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K G  +E   +F  +  KG  P+V  +T +I+ YA +G  ++A+R+  RM+  G  P
Sbjct: 26  GLCKQGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKP 85

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY+V++ GL      N ++  +A  Y       G+  N+  Y+++ +   +A ++DE
Sbjct: 86  DVVTYSVVVNGLCK----NGRV-EEALDYFQTCRFNGLAINSMFYSSLIDGLGKAGRIDE 140

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      ALID
Sbjct: 141 AERLFEEMSEKGCTRDSYCYN-ALID 165



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 72/134 (53%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ D+G  PDVV ++ V+      G+ +EAL  F     +G
Sbjct: 58  LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNG 117

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +A N+  Y+ LI GL     G A  + +A++   EM  KG   ++  Y A+ +A  +  K
Sbjct: 118 LAINSMFYSSLIDGL-----GKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGK 172

Query: 213 VDEARGLLQQMKAK 226
           VDEA  L ++M+ +
Sbjct: 173 VDEAMTLFKRMEEE 186



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 6/143 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
            + L+ ++ +KG        + VI      G+  E   VF  M+  G  PN   Y VLI 
Sbjct: 1   CVALYQEMDEKGVQVPPHVFSLVIGGLCKQGKLNEGYAVFENMIRKGSKPNVAIYTVLID 60

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G A +       + DA + L  M+ +G +P+  TY+ V     +  +V+EA    Q  + 
Sbjct: 61  GYAKSGS-----VEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRF 115

Query: 226 KGFVPDEKAVKEALIDKRGQGFR 248
            G   +      +LID  G+  R
Sbjct: 116 NGLAIN-SMFYSSLIDGLGKAGR 137


>gi|225432035|ref|XP_002273694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Vitis vinifera]
          Length = 666

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 75/149 (50%), Gaps = 6/149 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + + K+    EA QL  ++ +KG  P+V+++T +I A + AG  + +L V  +M A G
Sbjct: 252 LINGVCKEYTFEEAFQLLDEMMNKGIDPNVISYTTIINALSDAGNVELSLAVLAKMFARG 311

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            +PN +T+  LIKG       +     +A  +   M+ +G+ PN   Y A+       + 
Sbjct: 312 CSPNLHTFTSLIKGFFLKGGSH-----EALDFWDRMIREGVVPNVVAYNALMHGLCSKRS 366

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALID 241
           + +A  +  QM+  G  P+ +    ALID
Sbjct: 367 LGDAVSVFNQMEINGCCPNVRTYS-ALID 394



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 10/159 (6%)

Query: 77  IFHKMRTEGLTNNAVKMFDALSK----DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +  KM   G + N +  F +L K     G +HEAL  + ++  +G +P+VVA+ A++   
Sbjct: 303 VLAKMFARGCSPN-LHTFTSLIKGFFLKGGSHEALDFWDRMIREGVVPNVVAYNALMHGL 361

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
            S     +A+ VF +M  +G  PN  TY+ LI G A A D     L  A +    M+  G
Sbjct: 362 CSKRSLGDAVSVFNQMEINGCCPNVRTYSALIDGYAKAGD-----LDGASEVWNWMITHG 416

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             PN   YT + +   R    ++A  L++ M+ +   P+
Sbjct: 417 CHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPN 455



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 92/202 (45%), Gaps = 16/202 (7%)

Query: 36  SSSSDQPTKKYVNTKS-KLPPPYDPFKKVVDEEPTDPR--NLQEIFHKMRTEGLTNNAVK 92
           + SS+Q  K +   +  ++ P    +  ++D    + R   +  I+  M+ +G+  N   
Sbjct: 124 AGSSEQALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQMINPIYSNMKKDGMEPNVFT 183

Query: 93  ---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRML 149
              +  AL K+     A +L  ++  KG  PD V++T +I +    G+ KEA     R L
Sbjct: 184 YNILLKALCKNNRVDGAHKLLVEMSSKGCDPDEVSYTTLISSLCKLGKVKEA-----REL 238

Query: 150 ASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
           A    P+   Y  LI G+            +A + L EM+ KG+ PN  +YT +  A   
Sbjct: 239 AMSFTPSVPVYNALINGVC-----KEYTFEEAFQLLDEMMNKGIDPNVISYTTIINALSD 293

Query: 210 AQKVDEARGLLQQMKAKGFVPD 231
           A  V+ +  +L +M A+G  P+
Sbjct: 294 AGNVELSLAVLAKMFARGCSPN 315



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 96/204 (47%), Gaps = 19/204 (9%)

Query: 44  KKYVNTKS--KLPPPYDP-FKKVVDEEPTDPRNLQEIFHKMRTEGLTNNA---VKMFDAL 97
           K   N+KS    P  Y    +K+  E   D   +Q +  +M+ EG++ +    + +  + 
Sbjct: 64  KSIANSKSFKHTPLTYQMMIEKLASEREMDC--VQYLLQQMKLEGISCSEDLFISVIGSY 121

Query: 98  SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA 157
            + G + +AL+ F +++D    P V  +  +++A     + +    ++  M   G+ PN 
Sbjct: 122 RRAGSSEQALKTFYRMQDFRVKPTVKIYNHILDALLDENRFQMINPIYSNMKKDGMEPNV 181

Query: 158 YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
           +TY +L+K L      N ++ G A K L+EM  KG  P+  +YT +  +  +  KV EAR
Sbjct: 182 FTYNILLKALCK----NNRVDG-AHKLLVEMSSKGCDPDEVSYTTLISSLCKLGKVKEAR 236

Query: 218 GLLQQMKAKGFVPDEKAVKEALID 241
            L     A  F P    V  ALI+
Sbjct: 237 EL-----AMSFTP-SVPVYNALIN 254



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 83/182 (45%), Gaps = 11/182 (6%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            E+++ M T G   N V    M D L ++ + ++A  L   ++ +   P+ V     I+ 
Sbjct: 406 SEVWNWMITHGCHPNVVAYTCMVDVLCRNSMFNQAYCLIENMQVENCPPNTVTFNTFIKG 465

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              +G+   A++VF +M  SG  PN  TY  L+  L        +  G+A   + +M  +
Sbjct: 466 LCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELLDSLL-----KDRRFGEAFGLVKDMEHR 520

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVI 251
           G+  N  TY  +   +  A  + EA  LL +M  +G  PD   V   +ID   +  +G +
Sbjct: 521 GIELNLVTYNTIIYGYCCAGMLGEALELLGKMVVRGTKPDAITVN-IVIDAYCK--QGKV 577

Query: 252 NI 253
           NI
Sbjct: 578 NI 579



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 68/155 (43%), Gaps = 8/155 (5%)

Query: 77  IFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F++M   G   N      + D  +K G    A +++  +   G  P+VVA+T +++   
Sbjct: 373 VFNQMEINGCCPNVRTYSALIDGYAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLC 432

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
                 +A  +   M      PN  T+   IKGL  +   +  I     K   +M   G 
Sbjct: 433 RNSMFNQAYCLIENMQVENCPPNTVTFNTFIKGLCGSGRVDWAI-----KVFDQMGNSGC 487

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
            PN  TY  + ++ ++ ++  EA GL++ M+ +G 
Sbjct: 488 FPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGI 522



 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 10/168 (5%)

Query: 76  EIFHKMRTEGLTNNAVK----MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + + +M  EG+  N V     M    SK  L  +A+ +F Q++  G  P+V  ++A+I+ 
Sbjct: 337 DFWDRMIREGVVPNVVAYNALMHGLCSKRSLG-DAVSVFNQMEINGCCPNVRTYSALIDG 395

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           YA AG    A  V+  M+  G  PN   Y  ++  L   +     +   A   +  M  +
Sbjct: 396 YAKAGDLDGASEVWNWMITHGCHPNVVAYTCMVDVLCRNS-----MFNQAYCLIENMQVE 450

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
              PN  T+    +    + +VD A  +  QM   G  P+     E L
Sbjct: 451 NCPPNTVTFNTFIKGLCGSGRVDWAIKVFDQMGNSGCFPNTTTYNELL 498



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 10/160 (6%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F +M   G   N     ++ D+L KD    EA  L   ++ +G   ++V +  +I  Y
Sbjct: 477 KVFDQMGNSGCFPNTTTYNELLDSLLKDRRFGEAFGLVKDMEHRGIELNLVTYNTIIYGY 536

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             AG   EAL +  +M+  G  P+A T  ++I         N  I       LM+ +  G
Sbjct: 537 CCAGMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAI------QLMDRLSAG 590

Query: 193 -MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              P+   YT++         V+EA   L++M ++G  P+
Sbjct: 591 KWHPDIIAYTSLISGICTHIGVEEAIVYLRRMLSEGISPN 630



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 3/95 (3%)

Query: 76  EIFHKMRTEGLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+  KM   G   +A+ +    DA  K G  + A+QL  ++      PD++A+T++I   
Sbjct: 547 ELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMDRLSAGKWHPDIIAYTSLISGI 606

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
            +    +EA+    RML+ G++PN  T+ VL++ L
Sbjct: 607 CTHIGVEEAIVYLRRMLSEGISPNVATWNVLVRHL 641



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 5/128 (3%)

Query: 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
           G+  EAL+L  ++  +G  PD +    VI+AY   G+   A+++  R+ A    P+   Y
Sbjct: 540 GMLGEALELLGKMVVRGTKPDAITVNIVIDAYCKQGKVNIAIQLMDRLSAGKWHPDIIAY 599

Query: 161 AVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
             LI G+          + +A  YL  M+ +G+ PN  T+  +            A   L
Sbjct: 600 TSLISGICTHIG-----VEEAIVYLRRMLSEGISPNVATWNVLVRHLFSNMGHSGAVQFL 654

Query: 221 QQMKAKGF 228
             +   GF
Sbjct: 655 DAVLGSGF 662


>gi|410109905|gb|AFV61032.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           rugosa]
          Length = 414

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 109/237 (45%), Gaps = 15/237 (6%)

Query: 2   AATAILRWLLHSPSPKRS-LRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPF 60
           +A+A+   +  +   +RS J + +  + A L+      + +  +  +  + K   P+D  
Sbjct: 36  SASAVFAAIXETXGTQRSDJYVFSGLITAYLESGFLRDAIECYR--LTXEHKFWVPFDTC 93

Query: 61  KKVVDEEPTDPRNLQEI--FHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIK 114
           +KV+ E     +  + +  F++   E     ++  F+ L     KDG    A  +F  I 
Sbjct: 94  RKVL-EHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAIT 152

Query: 115 DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174
             G  P VV++  ++  Y   G   E  R+   MLASGV P+ YTY+VLI G    +  +
Sbjct: 153 KWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKESKXD 212

Query: 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
                DA +   EM+ KG+ PN   +T + +   +  +VD A  + +QM ++   PD
Sbjct: 213 -----DANELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 264



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 84/198 (42%), Gaps = 35/198 (17%)

Query: 66  EEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDV 122
           E   D  N  E+F +M  +GL  N V    + D   K+G    A++++ Q+  +   PD+
Sbjct: 208 ESKXDDAN--ELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDL 265

Query: 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN-------- 174
           + +  +I      G  K+A  +   M   G+ P+  TY  LI G     D +        
Sbjct: 266 ITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKITYTTLIDGCCKEGDLDSAFEHXKR 325

Query: 175 --------------AKILG--------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
                         A I G        DA+K L EM+  G++P+A TYT +   F +   
Sbjct: 326 MIQENXRLDEVXYTALISGLCXEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGD 385

Query: 213 VDEARGLLQQMKAKGFVP 230
           V +   LL++M+  G VP
Sbjct: 386 VWKGSKLLKEMQRDGHVP 403


>gi|359491317|ref|XP_003634263.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Vitis vinifera]
          Length = 665

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/199 (28%), Positives = 89/199 (44%), Gaps = 34/199 (17%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E++ +M  +GL  N V    + D L K      A +    +   G +P++  +  +I+ Y
Sbjct: 284 ELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGY 343

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAA-----ADG-------------- 173
             AG   EAL +   +    + P+ +TY++LIKGL        ADG              
Sbjct: 344 CKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNA 403

Query: 174 ---NAKILGDAQKYLME--------MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
              N  I G  ++  ME        M  KG+ PN  T++ + + + +A K++ A GL  +
Sbjct: 404 VTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTE 463

Query: 223 MKAKGFVPDEKAVKEALID 241
           M  KG +PD  A   ALID
Sbjct: 464 MVIKGLLPDVVAYT-ALID 481



 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 79/170 (46%), Gaps = 9/170 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +F  MR  G+  N      M D   K     +AL+L+ ++   G +P+VV    +I+ 
Sbjct: 248 ESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDG 307

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
                +   A +  + M + GV PN + Y  LI G   A +     L +A     E+   
Sbjct: 308 LCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGN-----LSEALSLHSEIEKH 362

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
            + P+  TY+ + +      +++EA GLLQ+MK KGF+P+       LID
Sbjct: 363 EILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPN-AVTYNTLID 411



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 77/172 (44%), Gaps = 21/172 (12%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+  +M  +G+  N +    + D   K G    A+ L+ ++  KG +PDVVA+TA+I+ +
Sbjct: 424 EVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGH 483

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G  KEA R+   M  +G+ PN +T + LI GL    DG    + DA K  +   G  
Sbjct: 484 FKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGL--CKDGR---ISDAIKLFLAKTGTD 538

Query: 193 -------------MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
                          PN   YTA+ +      ++ +A      M+  G  PD
Sbjct: 539 TTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPD 590



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 89/203 (43%), Gaps = 15/203 (7%)

Query: 46  YVNTKSKLPPPYDPFKKVVDEEPTDPR--NLQEIFHKMRTEGLTNNAVK---MFDALSKD 100
           +V  K  + P       V+D      R   + +++  M   G + N V    + D   + 
Sbjct: 147 WVYYKMDVLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQ 206

Query: 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
           G   +A +LF ++ +K   P VV +T +I       +  EA  +F  M  SG+ PN YTY
Sbjct: 207 GDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTY 266

Query: 161 AVLIKGLAAAADGNAKI--LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218
             ++       DG  KI  +  A +   EM+G G+ PN  T+  + +   +  ++  AR 
Sbjct: 267 NTMM-------DGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARK 319

Query: 219 LLQQMKAKGFVPDEKAVKEALID 241
            L  M + G VP+   V   LID
Sbjct: 320 FLIDMASFGVVPN-IFVYNCLID 341



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 74/143 (51%), Gaps = 8/143 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +M+ +G   NAV    + D   K+G   +A+++ +Q+ +KG  P+++  + +I+ Y 
Sbjct: 390 LLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYC 449

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG+ + A+ ++  M+  G+ P+   Y  LI G     DGN K   +A +   EM   G+
Sbjct: 450 KAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDG--HFKDGNTK---EAFRLHKEMQEAGL 504

Query: 194 RPNAGTYTAVFEAFVRAQKVDEA 216
            PN  T + + +   +  ++ +A
Sbjct: 505 HPNVFTLSCLIDGLCKDGRISDA 527



 Score = 46.2 bits (108), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 73/167 (43%), Gaps = 25/167 (14%)

Query: 53  LPPPYDPFKKVVDEEPTDPRNLQEIF--HK-MRTEGLTNNAVKM---FDALSKDGLTHEA 106
           L P    +  ++D    D  N +E F  HK M+  GL  N   +    D L KDG   +A
Sbjct: 469 LLPDVVAYTALIDGHFKDG-NTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDA 527

Query: 107 LQLFA-------------QIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGV 153
           ++LF              ++      P+ V +TA+I+   + G+  +A + F  M  SG+
Sbjct: 528 IKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGL 587

Query: 154 APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTY 200
            P+ +T  V+I+G   A       L D      +++  G+ PN+  Y
Sbjct: 588 RPDVFTCIVIIQGHFRAMH-----LRDVMMLQADILKMGIIPNSSVY 629



 Score = 40.4 bits (93), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 20/74 (27%), Positives = 36/74 (48%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L  DG   +A + F+ ++  G  PDV     +I+ +  A   ++ + +   +L  G
Sbjct: 562 LIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMG 621

Query: 153 VAPNAYTYAVLIKG 166
           + PN+  Y VL KG
Sbjct: 622 IIPNSSVYRVLAKG 635


>gi|255660800|gb|ACU25569.1| pentatricopeptide repeat-containing protein [Verbena rigida]
          Length = 418

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 61/237 (25%), Positives = 109/237 (45%), Gaps = 15/237 (6%)

Query: 2   AATAILRWLLHSPSPKRS-LRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPF 60
           +A+A+   +L +   +RS + + +  + A L+      + +  +  +  + K   P+D  
Sbjct: 47  SASAVFAAILETKGTQRSDIYVFSGLITAYLESGFLRDAIECYR--LTKEHKFRVPFDTC 104

Query: 61  KKVVDEEPTDPRNLQEI--FHKMRTEGLTNNAVKMFDALS----KDGLTHEALQLFAQIK 114
           +KV+ E     +  + +  F++   E     ++  F+ L     K+G    A  +F  I 
Sbjct: 105 RKVL-EHLMKLKYFKLVWGFYEENLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAIT 163

Query: 115 DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174
             G  P VV+   ++  Y   G   E  R+   M ASGV P+ YTY+VLI GL   +   
Sbjct: 164 KWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESK-- 221

Query: 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              + DA     EM+ KG+ PN  T+T + +   +  +VD A  + +QM ++   PD
Sbjct: 222 ---MDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 275



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 84/201 (41%), Gaps = 35/201 (17%)

Query: 63  VVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM 119
           +  E   D  N+  +F +M  +GL  N V    + D   K+G    A++++ Q+  +   
Sbjct: 216 LCKESKMDDANV--LFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 273

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD------- 172
           PD++ +  +I      G  K+A  +   M+  G+ P+ +TY  LI G     D       
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKFTYTTLIDGNCKEGDLETAFEY 333

Query: 173 ---------------GNAKILG--------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
                            A I G        DA+K L EM+  G++P  GTYT +   F +
Sbjct: 334 RKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCK 393

Query: 210 AQKVDEARGLLQQMKAKGFVP 230
              V     LL++M+  G+ P
Sbjct: 394 KGDVWXGSKLLKEMQRDGYKP 414


>gi|125551971|gb|EAY97680.1| hypothetical protein OsI_19602 [Oryza sativa Indica Group]
          Length = 586

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 88/198 (44%), Gaps = 44/198 (22%)

Query: 72  RNLQEIFHKMRTEGLTNNAVKMFD----ALSKDGLTHEALQLFAQIKDK----------- 116
           +N   +F  MRT G  ++ V+ F+    AL+++GL  EA Q+F +++D+           
Sbjct: 272 KNAVGVFEMMRTHGF-DDGVESFNCLLVALAQEGLGREANQVFDRMRDRYAPDLRSYTAL 330

Query: 117 -----------------------GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGV 153
                                  G  PDVV H  +IE      +  EA+++F  M A G 
Sbjct: 331 MLAWCNARNLVEAGRVWNEMLENGLKPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGP 390

Query: 154 APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV 213
           APN +TY +LI+            +  A +   EM   G +P+  TYT +   +  A+++
Sbjct: 391 APNVWTYTMLIRDHCKRGK-----MDMAMRCFEEMQDVGCQPDVATYTCLLVGYGNAKRM 445

Query: 214 DEARGLLQQMKAKGFVPD 231
           D    LL++M  KG  PD
Sbjct: 446 DRVTALLEEMTQKGCPPD 463



 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 78/168 (46%), Gaps = 11/168 (6%)

Query: 69  TDPRNLQE---IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDV 122
            + RNL E   ++++M   GL  + V    M + L +     EA+++F  +K KG  P+V
Sbjct: 335 CNARNLVEAGRVWNEMLENGLKPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGPAPNV 394

Query: 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQ 182
             +T +I  +   G+   A+R F  M   G  P+  TY  L+ G      GNAK +    
Sbjct: 395 WTYTMLIRDHCKRGKMDMAMRCFEEMQDVGCQPDVATYTCLLVGY-----GNAKRMDRVT 449

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
             L EM  KG  P+  TY A+ +        D+A  + ++M  KG  P
Sbjct: 450 ALLEEMTQKGCPPDGRTYNALIKLLTNRNMPDDAARIYKKMIKKGLEP 497



 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 79/162 (48%), Gaps = 8/162 (4%)

Query: 72  RNLQEIFHKMRTEG-LTNNAVKM-FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           +++  +  +M  EG L  +A K+   + +  G    A+ +F  ++  G    V +   ++
Sbjct: 238 QSMVALIQEMGKEGALCMDAFKIAIKSFAAAGEIKNAVGVFEMMRTHGFDDGVESFNCLL 297

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
            A A  G G+EA +VF RM     AP+  +Y  L+         NA+ L +A +   EM+
Sbjct: 298 VALAQEGLGREANQVFDRM-RDRYAPDLRSYTALMLAWC-----NARNLVEAGRVWNEML 351

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             G++P+   +  + E  +R Q+  EA  + + MKAKG  P+
Sbjct: 352 ENGLKPDVVVHNTMIEGLLRGQRRPEAVKMFELMKAKGPAPN 393



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 4/120 (3%)

Query: 109 LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
           L  ++  KG  PD   + A+I+   +     +A R++ +M+  G+ P  +TY +++K   
Sbjct: 451 LLEEMTQKGCPPDGRTYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYF 510

Query: 169 AAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
               G   ++G A     EM  KG+ P+  +YT      +R  + +EA   +++M  KG 
Sbjct: 511 LG--GRNYMMGCA--VWEEMHRKGICPDVNSYTVFINGHIRHGRPEEACKYIEEMIQKGM 566



 Score = 37.0 bits (84), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 8/112 (7%)

Query: 84  EGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQG-KEAL 142
           +G T NA  +   L+   +  +A +++ ++  KG  P +  +  ++++Y   G+      
Sbjct: 463 DGRTYNA--LIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYFLGGRNYMMGC 520

Query: 143 RVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            V+  M   G+ P+  +Y V I G      G  +   +A KY+ EM+ KGM+
Sbjct: 521 AVWEEMHRKGICPDVNSYTVFING--HIRHGRPE---EACKYIEEMIQKGMK 567


>gi|399107188|gb|AFP20358.1| At1g03560-like protein, partial [Capsella grandiflora]
          Length = 212

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 75/146 (51%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+G  +E   +F  +  KG  P+V  +T +I+ YA +G  ++A+R+  RM+  G  P
Sbjct: 28  GLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKP 87

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY+V++ GL      N ++  +A  Y       G   N+  Y+++ +   +A ++DE
Sbjct: 88  DVVTYSVVVNGLCK----NGRV-EEALDYFQTCRFNGXAINSMFYSSLIDGLGKAGRIDE 142

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      ALID
Sbjct: 143 AERLFEEMSEKGCTRDSYCYN-ALID 167



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 71/134 (52%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ D+G  PDVV ++ V+      G+ +EAL  F     +G
Sbjct: 60  LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNG 119

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            A N+  Y+ LI GL     G A  + +A++   EM  KG   ++  Y A+ +A  +  K
Sbjct: 120 XAINSMFYSSLIDGL-----GKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGK 174

Query: 213 VDEARGLLQQMKAK 226
           VBEA  L ++M+ +
Sbjct: 175 VBEAMTLFKRMEEE 188



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 6/143 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
            + L+ ++ +KG        + VI      G+  E   VF  M+  G  PN   Y VLI 
Sbjct: 3   CVALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLID 62

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G A +       + DA + L  M+ +G +P+  TY+ V     +  +V+EA    Q  + 
Sbjct: 63  GYAKSGS-----VEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRF 117

Query: 226 KGFVPDEKAVKEALIDKRGQGFR 248
            G   +      +LID  G+  R
Sbjct: 118 NGXAIN-SMFYSSLIDGLGKAGR 139


>gi|357499119|ref|XP_003619848.1| CCP [Medicago truncatula]
 gi|355494863|gb|AES76066.1| CCP [Medicago truncatula]
          Length = 556

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 82/179 (45%), Gaps = 31/179 (17%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D+  KD LT +A  L+ +I D G  PD++ +T++I  +   GQ  E  ++   M+   
Sbjct: 230 IIDSFCKDELTCKARDLYLKIVDMGIDPDILTYTSLIRGFCRTGQWGEVKQLMCEMVNKN 289

Query: 153 VAPNAYTYAVLI-----KGLAAAADG-----------------NAKILG--------DAQ 182
           + PN YT+ VLI     KG    A G                 N  I G        +A+
Sbjct: 290 INPNVYTFNVLIDAFCRKGKMIEAQGMFNLMVKRGQQPDIVTFNTLISGHCLHGNVLEAR 349

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           K    +  +G+ P+  +YT +   + + +++DEA  L  +M+ K  V D   +  +LID
Sbjct: 350 KLFDTVFERGILPDVWSYTILIIGYCKCKRIDEAVSLFNEMRCKNMVLD-IVLYSSLID 407



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 73/139 (52%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K G + +A QL  +++ +   P++V +  +I+++       +A  ++++++  G
Sbjct: 195 LINGLCKIGRSIDAFQLLQEMEGQVVKPNIVIYNMIIDSFCKDELTCKARDLYLKIVDMG 254

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+  TY  LI+G            G+ ++ + EMV K + PN  T+  + +AF R  K
Sbjct: 255 IDPDILTYTSLIRGFCRTGQ-----WGEVKQLMCEMVNKNINPNVYTFNVLIDAFCRKGK 309

Query: 213 VDEARGLLQQMKAKGFVPD 231
           + EA+G+   M  +G  PD
Sbjct: 310 MIEAQGMFNLMVKRGQQPD 328



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 80/169 (47%), Gaps = 9/169 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
            +F++MR + +  + V    + D L K G    A +LF+ I + G  P+V+ +  +I+A+
Sbjct: 385 SLFNEMRCKNMVLDIVLYSSLIDGLCKSGRISYAWELFSTINNDGPPPNVITYNILIDAF 444

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
                    + +F  M   G+ P   TY +LI G        +K + +A   L  M  K 
Sbjct: 445 CKIQDIDMGIELFKLMCGKGLTPTVLTYNILINGYC-----KSKRIREAMNLLSVMQSKN 499

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           + P++ TY ++F+   ++ ++ +A  L + M   G  P + A    L+D
Sbjct: 500 LAPDSITYNSLFDGLCKSGRISDAWELFKVMHVGG-PPVDVATYNVLLD 547



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 63/128 (49%), Gaps = 5/128 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA+ LF +++ K  + D+V ++++I+    +G+   A  +F  +   G  PN  TY +LI
Sbjct: 382 EAVSLFNEMRCKNMVLDIVLYSSLIDGLCKSGRISYAWELFSTINNDGPPPNVITYNILI 441

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
                  D +  I     +    M GKG+ P   TY  +   + +++++ EA  LL  M+
Sbjct: 442 DAFCKIQDIDMGI-----ELFKLMCGKGLTPTVLTYNILINGYCKSKRIREAMNLLSVMQ 496

Query: 225 AKGFVPDE 232
           +K   PD 
Sbjct: 497 SKNLAPDS 504



 Score = 43.5 bits (101), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 28/128 (21%), Positives = 56/128 (43%), Gaps = 5/128 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +A+ LF  + +   +P V+    +I +         A+ +  +M+  GV P+ +T ++ I
Sbjct: 67  DAVTLFNHLINMQPLPSVIQFNTIIGSVVKMKHCPVAISLLKQMVFKGVTPSIFTLSIWI 126

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
                  +     +G A   L  ++ +G +PN  T T V +      +V +A      + 
Sbjct: 127 NCYCHLGE-----MGFAFSVLGIVLKRGYQPNNITLTTVMKGLCINGEVQKAMDFHDNVA 181

Query: 225 AKGFVPDE 232
           A+G + DE
Sbjct: 182 AQGMLLDE 189



 Score = 40.8 bits (94), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 31/130 (23%), Positives = 53/130 (40%), Gaps = 16/130 (12%)

Query: 54  PPP--------YDPFKKVVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGL 102
           PPP         D F K+ D +        E+F  M  +GLT   +    + +   K   
Sbjct: 430 PPPNVITYNILIDAFCKIQDIDMG-----IELFKLMCGKGLTPTVLTYNILINGYCKSKR 484

Query: 103 THEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAV 162
             EA+ L + ++ K   PD + + ++ +    +G+  +A  +F  M   G   +  TY V
Sbjct: 485 IREAMNLLSVMQSKNLAPDSITYNSLFDGLCKSGRISDAWELFKVMHVGGPPVDVATYNV 544

Query: 163 LIKGLAAAAD 172
           L+     A D
Sbjct: 545 LLDAFCKAQD 554


>gi|12324355|gb|AAG52147.1|AC022355_8 hypothetical protein; 57683-56685 [Arabidopsis thaliana]
          Length = 332

 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 75/139 (53%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L KDG    A  LF ++ DKG  PDV+ ++ +I+++  +G+  +A ++   M+   
Sbjct: 82  IIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMIDSFCRSGRWTDAEQLLRDMIERQ 141

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+  T++ LI  L          + +A++   +M+ +G+ P   TY ++ + F +  +
Sbjct: 142 INPDVVTFSALINALVKEGK-----VSEAEEIYGDMLRRGIFPTTITYNSMIDGFCKQDR 196

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +++A+ +L  M +K   PD
Sbjct: 197 LNDAKRMLDSMASKSCSPD 215



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 68/159 (42%), Gaps = 8/159 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +EI+  M   G+    +    M D   K    ++A ++   +  K   PDVV  + +I  
Sbjct: 166 EEIYGDMLRRGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLING 225

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y  A +    + +F  M   G+  N  TY  LI G     D +A     AQ  L  M+  
Sbjct: 226 YCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDA-----AQDLLNVMISS 280

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           G+ PN  T+ ++  +    +++ +A  +L+ ++     P
Sbjct: 281 GVAPNYITFQSMLASLCSKKELRKAFAILEDLQKSEVCP 319



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 5/138 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K G T  AL L +++++      VV + A+I+     G    A  +F  M   G
Sbjct: 47  IINGLCKMGDTESALNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKG 106

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+  TY+ +I     +         DA++ L +M+ + + P+  T++A+  A V+  K
Sbjct: 107 IFPDVITYSGMIDSFCRSGRWT-----DAEQLLRDMIERQINPDVVTFSALINALVKEGK 161

Query: 213 VDEARGLLQQMKAKGFVP 230
           V EA  +   M  +G  P
Sbjct: 162 VSEAEEIYGDMLRRGIFP 179



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 58/147 (39%), Gaps = 34/147 (23%)

Query: 115 DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174
           + G  PDVV  T ++      G+  +AL +  RM+  G  P    Y  +I GL    D  
Sbjct: 3   ETGCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQP----YGTIINGLCKMGDTE 58

Query: 175 A-------------------------KILGD-----AQKYLMEMVGKGMRPNAGTYTAVF 204
           +                         ++  D     AQ    EM  KG+ P+  TY+ + 
Sbjct: 59  SALNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMI 118

Query: 205 EAFVRAQKVDEARGLLQQMKAKGFVPD 231
           ++F R+ +  +A  LL+ M  +   PD
Sbjct: 119 DSFCRSGRWTDAEQLLRDMIERQINPD 145


>gi|13872949|dbj|BAB44054.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 909

 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 85/183 (46%), Gaps = 10/183 (5%)

Query: 55  PPYDPFKKVVDEEPTDPR--NLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQL 109
           P    +  ++D+   + R  +   +F +M   GL  N V    +  AL K G+  +AL L
Sbjct: 359 PNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCL 418

Query: 110 FAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169
           F +++DKG    V  + ++I  Y   G    A  +   M+  G+ P A +Y+ LI GL  
Sbjct: 419 FDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCR 478

Query: 170 AADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFV 229
             D     L    +   EM  +G+  N  T+TA+   F + +K+DEA  L  +M     +
Sbjct: 479 NGD-----LSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVI 533

Query: 230 PDE 232
           P+E
Sbjct: 534 PNE 536



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 67/142 (47%), Gaps = 5/142 (3%)

Query: 89  NAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRM 148
           N   M D L K  L  EA  L  ++ D G +P+V A+ A+I+      +  +A R+F  M
Sbjct: 328 NCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEM 387

Query: 149 LASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFV 208
              G+ PN  TYA+LI  L         ++ DA     +M  KG++     Y ++   + 
Sbjct: 388 AGRGLEPNEVTYAILIHALCKRG-----MIEDALCLFDKMRDKGIKVTVYPYNSLINGYC 442

Query: 209 RAQKVDEARGLLQQMKAKGFVP 230
           +   +D ARGLL  M  +G  P
Sbjct: 443 KQGSLDRARGLLSGMVKEGLTP 464



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 9/158 (5%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M+ +G+  + +    M DALSK+    +AL  + Q+   G+ P+ V HT +I    
Sbjct: 663 LFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLC 722

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            +G    A  +   MLA  V PN +TY   +   A   D       +  K L   + +G 
Sbjct: 723 KSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGD------MEKAKDLHSAMLQGH 776

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             +  ++  + +   +A K+ EA  L+ ++   GF PD
Sbjct: 777 LASIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPD 814



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 8/161 (4%)

Query: 70  DPRNLQEIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D  +  E+  +M   G+  N      + +   KD    EA +LF ++ D   +P+ V   
Sbjct: 481 DLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFN 540

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
            +IE Y   G  ++A +++ +M+  G+ P+ YTY  LI GL   + G +K    A +++ 
Sbjct: 541 VMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTS-GVSK----ANEFVA 595

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
           ++       N  + TA+   F R  +  E   L  +M  +G
Sbjct: 596 DLENSYAVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRG 636



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 11/115 (9%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L K G   EA+ L ++I + G  PD ++++ +I      G   +A  ++  ML  G
Sbjct: 786 LIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKG 845

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL---MEMVGKGMRPNAGTYTAVF 204
           + P+   Y + I+           + G++ K L     M+  G++PN  TY A+ 
Sbjct: 846 LKPDVVAYNIFIRW--------CNVHGESDKALGIYTNMIRSGVQPNWDTYRALL 892



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 8/147 (5%)

Query: 81  MRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ 137
           M  EGLT  A     +   L ++G     ++L  ++ ++G   +    TA+I  +    +
Sbjct: 457 MVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKK 516

Query: 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA 197
             EA R+F +M+ S V PN  T+ V+I+G      GN +    A +   +MV  G++P+ 
Sbjct: 517 MDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLV--GNIR---KAFQLYDQMVEMGLKPDN 571

Query: 198 GTYTAVFEAFVRAQKVDEARGLLQQMK 224
            TY ++         V +A   +  ++
Sbjct: 572 YTYRSLISGLCLTSGVSKANEFVADLE 598



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 60/128 (46%), Gaps = 13/128 (10%)

Query: 116 KGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNA 175
           +GH+  +V+   +I+    AG+ +EA+ +  ++  SG +P+  +Y+ +I  L    D N 
Sbjct: 774 QGHLASIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDIN- 832

Query: 176 KILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV----DEARGLLQQMKAKGFVPD 231
                A +   EM+ KG++P+   Y      F+R   V    D+A G+   M   G  P+
Sbjct: 833 ----KAFELWNEMLYKGLKPDVVAYN----IFIRWCNVHGESDKALGIYTNMIRSGVQPN 884

Query: 232 EKAVKEAL 239
               +  L
Sbjct: 885 WDTYRALL 892



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 4/107 (3%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++  K+   G + + +    +   L K G  ++A +L+ ++  KG  PDVVA+   I   
Sbjct: 801 DLMSKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWC 860

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA-AAADGNAKIL 178
              G+  +AL ++  M+ SGV PN  TY  L+ G++   + G A +L
Sbjct: 861 NVHGESDKALGIYTNMIRSGVQPNWDTYRALLSGISLMVSKGQALLL 907



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 77/175 (44%), Gaps = 21/175 (12%)

Query: 69  TDPRNL---QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDV 122
            + RNL   + +  +M +EG+  +AV    +   L K+    EA+++   + + G   D 
Sbjct: 232 CESRNLDGARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADE 291

Query: 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI-----KGLAAAADGNAKI 177
           V +  ++  +    + + ALR+   M+  G  P+    + +I     K L   A   A  
Sbjct: 292 VTYRTLVYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACK 351

Query: 178 LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           LGD           GM PN   Y A+ +   + ++ D+A  L ++M  +G  P+E
Sbjct: 352 LGDL----------GMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNE 396



 Score = 45.1 bits (105), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 5/127 (3%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A  LF ++   G   D   +TA I AY  +     A  + +RM + GV  +A  Y VL+ 
Sbjct: 205 ARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLVVRMESEGVKASAVPYNVLMY 264

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           GL      N ++  +A +    MV  G+  +  TY  +   F R ++++ A  +   M  
Sbjct: 265 GLCK----NMRV-QEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMIR 319

Query: 226 KGFVPDE 232
            GFVP E
Sbjct: 320 LGFVPSE 326



 Score = 41.6 bits (96), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 29/134 (21%), Positives = 59/134 (44%), Gaps = 5/134 (3%)

Query: 99  KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAY 158
           ++G   E   L+ ++  +G   D+V+ T ++ A       +++  +F  M   GV P+  
Sbjct: 618 REGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDI 677

Query: 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218
            Y  +I  L+   +     +  A     +MV  G  PN  T+T +     ++  +  A  
Sbjct: 678 FYTCMIDALSKEEN-----MIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSAEL 732

Query: 219 LLQQMKAKGFVPDE 232
           L ++M A   +P++
Sbjct: 733 LCKEMLAGNVLPNK 746


>gi|46091165|dbj|BAD13711.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score = 77.4 bits (189), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 44/141 (31%), Positives = 68/141 (48%), Gaps = 7/141 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGH--MPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           +   L  D  + EAL+L   + D G    PDVV++T VI  +   G   +A   +  ML 
Sbjct: 168 LLKGLCDDNRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLD 227

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
            G+ PN  TY+ +I  L       A+ +  A + L  MV  G+ PN  TY ++   +  +
Sbjct: 228 RGILPNVVTYSSIIAALC-----KAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSS 282

Query: 211 QKVDEARGLLQQMKAKGFVPD 231
            +  EA G L++M + G  PD
Sbjct: 283 GQPKEAIGFLKKMHSDGVEPD 303



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 8/157 (5%)

Query: 78  FHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           +H+M   G+  N V    +  AL K     +A+++   +   G MP+   + +++  Y S
Sbjct: 222 YHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCS 281

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
           +GQ KEA+    +M + GV P+  TY  L+  L      N +   +A+K    M  +G++
Sbjct: 282 SGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCK----NGRCT-EARKMFDSMTKRGLK 336

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           P   TY  + + +     + E  GLL  M   G  P+
Sbjct: 337 PEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPN 373



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 46/193 (23%), Positives = 83/193 (43%), Gaps = 43/193 (22%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMP------------- 120
           +F KMR +GL  + V    +   L K G   +A++ F Q+ D+   P             
Sbjct: 396 VFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLC 455

Query: 121 ----------------------DVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAY 158
                                 D +   ++I+++   G+  E+ ++F  M+  GV P+  
Sbjct: 456 IFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDII 515

Query: 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218
           TY+ LI G   A       + +A K L  MV  GM+P+  TY  +   + +  ++++A  
Sbjct: 516 TYSTLIDGYCLAGK-----MDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALV 570

Query: 219 LLQQMKAKGFVPD 231
           L ++M++ G  PD
Sbjct: 571 LFREMESSGVSPD 583



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 36/133 (27%), Positives = 69/133 (51%), Gaps = 5/133 (3%)

Query: 99  KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAY 158
           K+G   +A   + ++ D+G +P+VV ++++I A   A    +A+ V   M+ +GV PN  
Sbjct: 211 KEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCR 270

Query: 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218
           TY  ++ G  ++  G  K   +A  +L +M   G+ P+  TY ++ +   +  +  EAR 
Sbjct: 271 TYNSIVHGYCSS--GQPK---EAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARK 325

Query: 219 LLQQMKAKGFVPD 231
           +   M  +G  P+
Sbjct: 326 MFDSMTKRGLKPE 338



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 76/163 (46%), Gaps = 8/163 (4%)

Query: 71  PRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P+       KM ++G+  + V    + D L K+G   EA ++F  +  +G  P++  +  
Sbjct: 285 PKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGT 344

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           +++ YA+ G   E   +   M+ +G+ PN Y +++LI   A     +  +L        +
Sbjct: 345 LLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAML-----VFSK 399

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           M  +G+ P+  TY  V     ++ +V++A    +QM  +   P
Sbjct: 400 MRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSP 442



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 41/166 (24%), Positives = 75/166 (45%), Gaps = 30/166 (18%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
           A +K G   +A+ +F++++ +G  PD V +  VI     +G+ ++A+R F +M+   ++P
Sbjct: 383 AYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSP 442

Query: 156 NAYTYAVLIKGLA----------------------------AAADGNAK--ILGDAQKYL 185
               Y  LI  L                             +  D + K   + +++K  
Sbjct: 443 GNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLF 502

Query: 186 MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             MV  G++P+  TY+ + + +  A K+DEA  LL  M + G  PD
Sbjct: 503 DLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPD 548



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 50/221 (22%), Positives = 94/221 (42%), Gaps = 38/221 (17%)

Query: 60  FKKVVDEEPTDPRNLQ--EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIK 114
           F  ++D    + R ++  ++F  M   G+  + +    + D     G   EA +L A + 
Sbjct: 482 FNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMV 541

Query: 115 DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL------A 168
             G  PD V +  +I  Y    + ++AL +F  M +SGV+P+  TY ++++GL      A
Sbjct: 542 SVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTA 601

Query: 169 AAAD----------------------GNAK--ILGDAQKYLMEMVGKGMRPNAGTYTAVF 204
           AA +                      G  K  +  +A +    +    ++    T+  + 
Sbjct: 602 AAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMI 661

Query: 205 EAFVRAQKVDEARGLLQQMKAKGFVPDEKA---VKEALIDK 242
            A ++  + DEA+ L   + A G VPD +    + E LI++
Sbjct: 662 GALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQ 702



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 4/117 (3%)

Query: 116 KGHMPDVVAHTAVIEAYASAGQGKEALRVFMR-MLASGVAPNAYTYAVLIKGLAAAADGN 174
           KG + D +A T +++   +  +  +A+ + +R M   G  PN ++Y +L+KGL    D N
Sbjct: 120 KGFIVDAIAFTPMLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGL---CDDN 176

Query: 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
                     +M   G    P+  +YT V   F +   +D+A G   +M  +G +P+
Sbjct: 177 RSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPN 233


>gi|341605721|gb|AEK82963.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605821|gb|AEK83013.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 75/146 (51%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+G  +E   +F  +  KG  P+V  +T +I+ YA +G  ++A+R+  RM+  G  P
Sbjct: 26  GLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKP 85

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY+V++ GL      N ++  +A  Y       G+  N+  Y+++     +A ++DE
Sbjct: 86  DVVTYSVVVNGLCK----NGRV-EEALDYFQTCRFNGLAINSMFYSSLIXGLGKAGRIDE 140

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      ALID
Sbjct: 141 AERLFEEMSEKGCTRDSYCYN-ALID 165



 Score = 73.9 bits (180), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 72/134 (53%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ D+G  PDVV ++ V+      G+ +EAL  F     +G
Sbjct: 58  LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNG 117

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +A N+  Y+ LI GL     G A  + +A++   EM  KG   ++  Y A+ +A  +  K
Sbjct: 118 LAINSMFYSSLIXGL-----GKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGK 172

Query: 213 VDEARGLLQQMKAK 226
           VDEA  L ++M+ +
Sbjct: 173 VDEAMTLFKRMEEE 186



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 5/123 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
            + L+ ++ +KG        + VI      G+  E   VF  M+  G  PN   Y VLI 
Sbjct: 1   CVALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLID 60

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G A +       + DA + L  M+ +G +P+  TY+ V     +  +V+EA    Q  + 
Sbjct: 61  GYAKSGS-----VEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRF 115

Query: 226 KGF 228
            G 
Sbjct: 116 NGL 118


>gi|115434588|ref|NP_001042052.1| Os01g0153200 [Oryza sativa Japonica Group]
 gi|113531583|dbj|BAF03966.1| Os01g0153200 [Oryza sativa Japonica Group]
          Length = 1139

 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 76/159 (47%), Gaps = 8/159 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M   GL  N V    +  AL K G+  +AL LF +++DKG    V  + ++I  Y 
Sbjct: 360 LFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGIKVTVYPYNSLINGYC 419

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G    A  +   M+  G+ P A +Y+ LI GL    D     L    +   EM  +G+
Sbjct: 420 KQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCRNGD-----LSSCMELHREMAERGI 474

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
             N  T+TA+   F + +K+DEA  L  +M     +P+E
Sbjct: 475 AWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNE 513



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 67/142 (47%), Gaps = 5/142 (3%)

Query: 89  NAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRM 148
           N   M D L K  L  EA  L  ++ D G +P+V A+ A+I+      +  +A R+F  M
Sbjct: 305 NCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEM 364

Query: 149 LASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFV 208
              G+ PN  TYA+LI  L         ++ DA     +M  KG++     Y ++   + 
Sbjct: 365 AGRGLEPNEVTYAILIHALCKRG-----MIEDALCLFDKMRDKGIKVTVYPYNSLINGYC 419

Query: 209 RAQKVDEARGLLQQMKAKGFVP 230
           +   +D ARGLL  M  +G  P
Sbjct: 420 KQGSLDRARGLLSGMVKEGLTP 441



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 9/158 (5%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M+ +G+  + +    M DALSK+    +AL  + Q+   G+ P+ V HT +I    
Sbjct: 640 LFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLC 699

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            +G    A  +   MLA  V PN +TY   +   A   D       +  K L   + +G 
Sbjct: 700 KSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGD------MEKAKDLHSAMLQGH 753

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             +  ++  + +   +A K+ EA  L+ ++   GF PD
Sbjct: 754 LASIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPD 791



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 8/161 (4%)

Query: 70  DPRNLQEIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D  +  E+  +M   G+  N      + +   KD    EA +LF ++ D   +P+ V   
Sbjct: 458 DLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFN 517

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
            +IE Y   G  ++A +++ +M+  G+ P+ YTY  LI GL   + G +K    A +++ 
Sbjct: 518 VMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTS-GVSK----ANEFVA 572

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
           ++       N  + TA+   F R  +  E   L  +M  +G
Sbjct: 573 DLENSYAVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRG 613



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 11/115 (9%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L K G   EA+ L ++I + G  PD ++++ +I      G   +A  ++  ML  G
Sbjct: 763 LIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKG 822

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL---MEMVGKGMRPNAGTYTAVF 204
           + P+   Y + I+           + G++ K L     M+  G++PN  TY A+ 
Sbjct: 823 LKPDVVAYNIFIRW--------CNVHGESDKALGIYTNMIRSGVQPNWDTYRALL 869



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 8/147 (5%)

Query: 81  MRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ 137
           M  EGLT  A     +   L ++G     ++L  ++ ++G   +    TA+I  +    +
Sbjct: 434 MVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKK 493

Query: 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA 197
             EA R+F +M+ S V PN  T+ V+I+G      GN +    A +   +MV  G++P+ 
Sbjct: 494 MDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLV--GNIR---KAFQLYDQMVEMGLKPDN 548

Query: 198 GTYTAVFEAFVRAQKVDEARGLLQQMK 224
            TY ++         V +A   +  ++
Sbjct: 549 YTYRSLISGLCLTSGVSKANEFVADLE 575



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 60/128 (46%), Gaps = 13/128 (10%)

Query: 116 KGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNA 175
           +GH+  +V+   +I+    AG+ +EA+ +  ++  SG +P+  +Y+ +I  L    D N 
Sbjct: 751 QGHLASIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDIN- 809

Query: 176 KILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV----DEARGLLQQMKAKGFVPD 231
                A +   EM+ KG++P+   Y      F+R   V    D+A G+   M   G  P+
Sbjct: 810 ----KAFELWNEMLYKGLKPDVVAYN----IFIRWCNVHGESDKALGIYTNMIRSGVQPN 861

Query: 232 EKAVKEAL 239
               +  L
Sbjct: 862 WDTYRALL 869



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 50/96 (52%), Gaps = 3/96 (3%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++  K+   G + + +    +   L K G  ++A +L+ ++  KG  PDVVA+   I   
Sbjct: 778 DLMSKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWC 837

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
              G+  +AL ++  M+ SGV PN  TY  L+ G++
Sbjct: 838 NVHGESDKALGIYTNMIRSGVQPNWDTYRALLSGIS 873



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 83/189 (43%), Gaps = 23/189 (12%)

Query: 69  TDPRNL---QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDV 122
            + RNL   + +  +M +EG+  +AV    +   L K+    EA+++   + + G   D 
Sbjct: 209 CESRNLDGARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADE 268

Query: 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI-----KGLAAAADGNAKI 177
           V +  ++  +    + + ALR+   M+  G  P+    + +I     K L   A   A  
Sbjct: 269 VTYRTLVYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACK 328

Query: 178 LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE--KAV 235
           LGD           GM PN   Y A+ +   + ++ D+A  L ++M  +G  P+E   A+
Sbjct: 329 LGDL----------GMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAI 378

Query: 236 KEALIDKRG 244
               + KRG
Sbjct: 379 LIHALCKRG 387



 Score = 45.1 bits (105), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 5/127 (3%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A  LF ++   G   D   +TA I AY  +     A  + +RM + GV  +A  Y VL+ 
Sbjct: 182 ARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLVVRMESEGVKASAVPYNVLMY 241

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           GL      N ++  +A +    MV  G+  +  TY  +   F R ++++ A  +   M  
Sbjct: 242 GLCK----NMRV-QEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMIR 296

Query: 226 KGFVPDE 232
            GFVP E
Sbjct: 297 LGFVPSE 303



 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 29/134 (21%), Positives = 59/134 (44%), Gaps = 5/134 (3%)

Query: 99  KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAY 158
           ++G   E   L+ ++  +G   D+V+ T ++ A       +++  +F  M   GV P+  
Sbjct: 595 REGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDI 654

Query: 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218
            Y  +I  L+   +     +  A     +MV  G  PN  T+T +     ++  +  A  
Sbjct: 655 FYTCMIDALSKEEN-----MIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSAEL 709

Query: 219 LLQQMKAKGFVPDE 232
           L ++M A   +P++
Sbjct: 710 LCKEMLAGNVLPNK 723


>gi|399107200|gb|AFP20364.1| At1g03560-like protein, partial [Capsella grandiflora]
          Length = 212

 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 75/146 (51%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+G  +E   +F  +  KG  P+V  +T +I+ YA +G  ++A+R+  RM+  G  P
Sbjct: 28  GLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKP 87

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY+V++ GL      N ++  +A  Y       G   N+  Y+++ +   +A ++DE
Sbjct: 88  DVVTYSVVVNGLCK----NGRV-EEALDYFQTCRFNGXAINSMFYSSLIDGLGKAGRIDE 142

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      ALID
Sbjct: 143 AERLFEEMSEKGCTRDSYCYN-ALID 167



 Score = 73.6 bits (179), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 71/134 (52%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ D+G  PDVV ++ V+      G+ +EAL  F     +G
Sbjct: 60  LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNG 119

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            A N+  Y+ LI GL     G A  + +A++   EM  KG   ++  Y A+ +A  +  K
Sbjct: 120 XAINSMFYSSLIDGL-----GKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGK 174

Query: 213 VDEARGLLQQMKAK 226
           VDEA  L ++M+ +
Sbjct: 175 VDEAMTLFKRMEEE 188



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 6/143 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
            + L+ ++ +KG        + VI      G+  E   VF  M+  G  PN   Y VLI 
Sbjct: 3   CVALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLID 62

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G A +       + DA + L  M+ +G +P+  TY+ V     +  +V+EA    Q  + 
Sbjct: 63  GYAKSGS-----VEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRF 117

Query: 226 KGFVPDEKAVKEALIDKRGQGFR 248
            G   +      +LID  G+  R
Sbjct: 118 NGXAIN-SMFYSSLIDGLGKAGR 139


>gi|260780548|gb|ACX50820.1| AT1G03560-like protein [Capsella bursa-pastoris]
          Length = 183

 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 76/146 (52%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+G  +E   +F  +  KG  P+V  +T +I+ YA +G  ++A+R+  RM+  G  P
Sbjct: 16  GLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGNVEDAIRLLHRMIDEGFKP 75

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  T++V++ GL      N ++  +A  Y       G+  N+  Y+++ +   +A ++DE
Sbjct: 76  DVVTFSVVVNGLCK----NGRV-EEALDYFQTCQFNGLAINSMFYSSLIDGLGKAGRIDE 130

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      ALID
Sbjct: 131 AERLFEEMSEKGCTRDSYCYN-ALID 155



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 71/132 (53%), Gaps = 5/132 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ D+G  PDVV  + V+      G+ +EAL  F     +G
Sbjct: 48  LIDGYAKSGNVEDAIRLLHRMIDEGFKPDVVTFSVVVNGLCKNGRVEEALDYFQTCQFNG 107

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +A N+  Y+ LI GL     G A  + +A++   EM  KG   ++  Y A+ +AF +  K
Sbjct: 108 LAINSMFYSSLIDGL-----GKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHGK 162

Query: 213 VDEARGLLQQMK 224
           VDEA  L ++M+
Sbjct: 163 VDEAMTLFKRME 174



 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 6/125 (4%)

Query: 124 AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQK 183
           A + VI      G+  E   VF  M+  G  PN   Y VLI G A +  GN +   DA +
Sbjct: 9   AFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKS--GNVE---DAIR 63

Query: 184 YLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKR 243
            L  M+ +G +P+  T++ V     +  +V+EA    Q  +  G   +      +LID  
Sbjct: 64  LLHRMIDEGFKPDVVTFSVVVNGLCKNGRVEEALDYFQTCQFNGLAIN-SMFYSSLIDGL 122

Query: 244 GQGFR 248
           G+  R
Sbjct: 123 GKAGR 127


>gi|222636757|gb|EEE66889.1| hypothetical protein OsJ_23712 [Oryza sativa Japonica Group]
          Length = 579

 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F + +++G+  N V    + D   K G   EA  +  ++  KG  P+V    ++++A  
Sbjct: 389 LFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALV 448

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            A +  EAL  F  M      PN YTY++LI GL      N   +     +  +M  +G+
Sbjct: 449 KAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFV-----FWQDMQKQGL 503

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            PN  TYT +     +   + +A  L ++ KA G +PD
Sbjct: 504 VPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPD 541



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 11/145 (7%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M D L K     EA ++F     +G  PD V + ++I+     GQ  EA R+F +ML +G
Sbjct: 163 MVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAG 222

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILG---DAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
              N   Y  LI+        N  I G   D  K   E++ +G +P+        +   +
Sbjct: 223 HNANPVVYTSLIR--------NFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFK 274

Query: 210 AQKVDEARGLLQQMKAKGFVPDEKA 234
           A +V++ R + + +++ GF+PD ++
Sbjct: 275 AGEVEKGRMIFEDIRSYGFLPDVRS 299



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L+K     EA  LF + K KG   +VV ++++I+ +   G+  EA  +   M+  G
Sbjct: 373 IVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKG 432

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN YT+  L+  L  A + N     +A      M      PN  TY+ +     R QK
Sbjct: 433 LTPNVYTWNSLLDALVKAEEIN-----EALVCFQSMKEMKCPPNTYTYSILINGLCRVQK 487

Query: 213 VDEARGLLQQMKAKGFVPD 231
            ++A    Q M+ +G VP+
Sbjct: 488 YNKAFVFWQDMQKQGLVPN 506



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 72/151 (47%), Gaps = 6/151 (3%)

Query: 95  DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           D + K G   +   +F  I+  G +PDV +++ +I     AGQ +E   +F  M   G A
Sbjct: 270 DCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFA 329

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
            +A  Y  ++ G   +       +  A + L EM  K ++P   TY A+ +   +  ++D
Sbjct: 330 LDARAYNAVVDGFCKSGK-----VHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLD 384

Query: 215 EARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
           EA  L ++ K+KG +     +  +LID  G+
Sbjct: 385 EAYMLFEEAKSKG-IELNVVLYSSLIDGFGK 414



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 80/159 (50%), Gaps = 9/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           + FH+++ +GL  + V    M   L K G   EA +LFAQ++ +  +P   A+  +I  Y
Sbjct: 4   KFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGY 63

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
            SAG+ ++A ++  R+   G  P+  ++  ++  L     G  + + +A   L E++ K 
Sbjct: 64  GSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCL-----GKKRKVDEALS-LFEVMKKD 117

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             PN+ TY  + +      +V+EA  +L +M+     P+
Sbjct: 118 AEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPN 156



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 74/160 (46%), Gaps = 12/160 (7%)

Query: 77  IFHKMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           IF  +R+ G      +   +   L+K G   E   +F  +K +G   D  A+ AV++ + 
Sbjct: 284 IFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFC 343

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKI--LGDAQKYLMEMVGK 191
            +G+  +A  +   M    V P   TY  ++ GL       AKI  L +A     E   K
Sbjct: 344 KSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGL-------AKIDRLDEAYMLFEEAKSK 396

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G+  N   Y+++ + F +  ++DEA  +L++M  KG  P+
Sbjct: 397 GIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPN 436



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 61/119 (51%), Gaps = 5/119 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A + F ++K +G  PD V++T++I     AG+  EA  +F +M A    P AY Y  +I 
Sbjct: 2   AWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIM 61

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           G      G+A    DA K L  +  +G  P+  ++ ++     + +KVDEA  L + MK
Sbjct: 62  GY-----GSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMK 115



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 82/200 (41%), Gaps = 46/200 (23%)

Query: 72  RNLQE---IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAH 125
           R L+E   IF      G   + V    + D L K G   EA +LF ++ D GH  + V +
Sbjct: 171 RKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVY 230

Query: 126 TAVIEAYASAGQGKEALRVFMRMLASGVAP-----NAY---------------------- 158
           T++I  +   G+ ++  ++F  ++  G  P     N Y                      
Sbjct: 231 TSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRS 290

Query: 159 --------TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
                   +Y++LI GL  A  G A+   +       M  +G   +A  Y AV + F ++
Sbjct: 291 YGFLPDVRSYSILIHGLTKA--GQAR---ETSNIFHAMKQQGFALDARAYNAVVDGFCKS 345

Query: 211 QKVDEARGLLQQMKAKGFVP 230
            KV +A  +L++MK K   P
Sbjct: 346 GKVHKAYEILEEMKEKCVQP 365



 Score = 41.6 bits (96), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 43/78 (55%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L +    ++A   +  ++ +G +P+VV +T +I   A  G   +A  +F R  A+G
Sbjct: 478 LINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANG 537

Query: 153 VAPNAYTYAVLIKGLAAA 170
             P+A ++  LI+G++ A
Sbjct: 538 GIPDAASFNALIEGMSNA 555


>gi|260780506|gb|ACX50799.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780508|gb|ACX50800.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780510|gb|ACX50801.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780512|gb|ACX50802.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780514|gb|ACX50803.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780516|gb|ACX50804.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780518|gb|ACX50805.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780520|gb|ACX50806.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780522|gb|ACX50807.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780524|gb|ACX50808.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780526|gb|ACX50809.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780528|gb|ACX50810.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780530|gb|ACX50811.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780532|gb|ACX50812.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780534|gb|ACX50813.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780536|gb|ACX50814.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780538|gb|ACX50815.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780540|gb|ACX50816.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780542|gb|ACX50817.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780544|gb|ACX50818.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780550|gb|ACX50821.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780552|gb|ACX50822.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780554|gb|ACX50823.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780556|gb|ACX50824.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780560|gb|ACX50826.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780562|gb|ACX50827.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780564|gb|ACX50828.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780566|gb|ACX50829.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780568|gb|ACX50830.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780570|gb|ACX50831.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780572|gb|ACX50832.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780574|gb|ACX50833.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780576|gb|ACX50834.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780578|gb|ACX50835.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780580|gb|ACX50836.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780582|gb|ACX50837.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780584|gb|ACX50838.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780586|gb|ACX50839.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780588|gb|ACX50840.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780590|gb|ACX50841.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780592|gb|ACX50842.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780594|gb|ACX50843.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780596|gb|ACX50844.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780598|gb|ACX50845.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780600|gb|ACX50846.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780602|gb|ACX50847.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780604|gb|ACX50848.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780606|gb|ACX50849.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780608|gb|ACX50850.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780610|gb|ACX50851.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780612|gb|ACX50852.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780614|gb|ACX50853.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780616|gb|ACX50854.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780618|gb|ACX50855.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780620|gb|ACX50856.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780622|gb|ACX50857.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780624|gb|ACX50858.1| AT1G03560-like protein [Capsella bursa-pastoris]
          Length = 183

 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 76/146 (52%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+G  +E   +F  +  KG  P+V  +T +I+ YA +G  ++A+R+  RM+  G  P
Sbjct: 16  GLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGNVEDAIRLLHRMIDEGFKP 75

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  T++V++ GL      N ++  +A  Y       G+  N+  Y+++ +   +A ++DE
Sbjct: 76  DVVTFSVVVNGLCK----NGRV-EEALDYFQTCQFNGLAINSMFYSSLIDGLGKAGRIDE 130

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      ALID
Sbjct: 131 AERLFEEMSEKGCTRDSYCYN-ALID 155



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 72/134 (53%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ D+G  PDVV  + V+      G+ +EAL  F     +G
Sbjct: 48  LIDGYAKSGNVEDAIRLLHRMIDEGFKPDVVTFSVVVNGLCKNGRVEEALDYFQTCQFNG 107

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +A N+  Y+ LI GL     G A  + +A++   EM  KG   ++  Y A+ +AF +  K
Sbjct: 108 LAINSMFYSSLIDGL-----GKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHGK 162

Query: 213 VDEARGLLQQMKAK 226
           VDEA  L ++M+ +
Sbjct: 163 VDEAMTLFKRMEEE 176



 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 6/125 (4%)

Query: 124 AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQK 183
           A + VI      G+  E   VF  M+  G  PN   Y VLI G A +  GN +   DA +
Sbjct: 9   AFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKS--GNVE---DAIR 63

Query: 184 YLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKR 243
            L  M+ +G +P+  T++ V     +  +V+EA    Q  +  G   +      +LID  
Sbjct: 64  LLHRMIDEGFKPDVVTFSVVVNGLCKNGRVEEALDYFQTCQFNGLAIN-SMFYSSLIDGL 122

Query: 244 GQGFR 248
           G+  R
Sbjct: 123 GKAGR 127


>gi|125542792|gb|EAY88931.1| hypothetical protein OsI_10416 [Oryza sativa Indica Group]
          Length = 796

 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 73/140 (52%), Gaps = 5/140 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DA  K   + +AL+L  +++DKG  P +V H  V+++    G+ +EAL    ++   G
Sbjct: 355 LVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEG 414

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +AP+  TY  LI     A  GN   +  A   + EMVGKG++ +  T   V     + ++
Sbjct: 415 LAPDVITYNTLIDAYCKA--GN---VAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKR 469

Query: 213 VDEARGLLQQMKAKGFVPDE 232
            ++A  LL     +GFVPDE
Sbjct: 470 YEDAEELLHSPPQRGFVPDE 489



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 107/262 (40%), Gaps = 40/262 (15%)

Query: 10  LLHSPSPKRSLRITNTRVNATLQRSLSSSSDQPTKKYVNTKS----KLPPPYDPFKKVVD 65
           LLHS   +R +R +    NA L     S S  P       +S    +L P +  F  +V 
Sbjct: 157 LLHSLRRRRGVRPSLQAANAVLSALSRSPSTLPQASLDVFRSLIELRLHPNHYTFNLLVH 216

Query: 66  EEPTDPR--NLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMP 120
              +     +       M+  GL+ +AV    + +A  + G+  EA  L A++K  G  P
Sbjct: 217 THCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAP 276

Query: 121 DVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD-------- 172
               +  ++ A+A  G  K+A +V   M A G  P+  TY VL  GL  A          
Sbjct: 277 TQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAMGLCQAGKVDEAFRLK 336

Query: 173 ------GNA-----------------KILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
                 G A                 +   DA + L EM  KG++P   T+  V ++  +
Sbjct: 337 DEMERLGTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCK 396

Query: 210 AQKVDEARGLLQQMKAKGFVPD 231
             K++EA G L+++  +G  PD
Sbjct: 397 EGKLEEALGKLEKIAEEGLAPD 418



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 5/127 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +A +L      +G +PD V++  V+ AY      + ALR++ +M+   + P+  TY  LI
Sbjct: 472 DAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLI 531

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           KGL        + L +A   L E V KG+ P+  TY  +  A+ +   ++ A     +M 
Sbjct: 532 KGLC-----RMERLKEAIDKLNEFVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMV 586

Query: 225 AKGFVPD 231
              F PD
Sbjct: 587 ENSFKPD 593



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 8/134 (5%)

Query: 102 LTHEALQLFAQIKDK-GHMPDVVAHTAVIEAYASAGQG--KEALRVFMRMLASGVAPNAY 158
           L H A QL   ++ + G  P + A  AV+ A + +     + +L VF  ++   + PN Y
Sbjct: 150 LPHLAAQLLHSLRRRRGVRPSLQAANAVLSALSRSPSTLPQASLDVFRSLIELRLHPNHY 209

Query: 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218
           T+ +L+    +        L DA   L  M G G+ P+A TY  +  A  R   + EAR 
Sbjct: 210 TFNLLVHTHCSKG-----TLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARA 264

Query: 219 LLQQMKAKGFVPDE 232
           LL +MK  G  P +
Sbjct: 265 LLARMKRDGIAPTQ 278



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 53/127 (41%), Gaps = 5/127 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA+    +  +KG +PD   +  +I AY   G  + A R   +M+ +   P+  T   L+
Sbjct: 542 EAIDKLNEFVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLM 601

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            GL          L  A K     V KG + +  TY  + ++  +   VD A      M+
Sbjct: 602 NGLCLHGK-----LDKALKLFESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDME 656

Query: 225 AKGFVPD 231
            KG  PD
Sbjct: 657 VKGLQPD 663



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 79/191 (41%), Gaps = 37/191 (19%)

Query: 77  IFHKMRTEGL-----TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +  +MR +G+     T+N V    +L K+G   EAL    +I ++G  PDV+ +  +I+A
Sbjct: 371 LLEEMRDKGVKPTLVTHNIV--VKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDA 428

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAA---ADGNAKILGDAQK----- 183
           Y  AG   +A  +   M+  G+  + +T   ++  L       D    +    Q+     
Sbjct: 429 YCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPD 488

Query: 184 ----------YLME------------MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221
                     Y  E            M+ + + P+  TY  + +   R +++ EA   L 
Sbjct: 489 EVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLN 548

Query: 222 QMKAKGFVPDE 232
           +   KG VPDE
Sbjct: 549 EFVEKGLVPDE 559



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 69/143 (48%), Gaps = 8/143 (5%)

Query: 87  TNNAVKMFDALSKDGLTHEALQLFAQIKDKGH-MPDVVAHTAVIEAYASAGQGKEALRVF 145
           T N + M   L + G   EA +L  +++  G  +PDVV +  +++A        +ALR+ 
Sbjct: 315 TYNVLAM--GLCQAGKVDEAFRLKDEMERLGTALPDVVTYNTLVDACFKWRCSSDALRLL 372

Query: 146 MRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFE 205
             M   GV P   T+ +++K L          L +A   L ++  +G+ P+  TY  + +
Sbjct: 373 EEMRDKGVKPTLVTHNIVVKSLCKEGK-----LEEALGKLEKIAEEGLAPDVITYNTLID 427

Query: 206 AFVRAQKVDEARGLLQQMKAKGF 228
           A+ +A  V +A  L+ +M  KG 
Sbjct: 428 AYCKAGNVAKAFTLMDEMVGKGL 450



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 60/135 (44%), Gaps = 5/135 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +  A  K+G    A +   ++ +    PDVV    ++      G+  +AL++F   +  G
Sbjct: 565 IIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKG 624

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
              +  TY  LI+ +    D +      A  +  +M  KG++P+A TY  V  A   A +
Sbjct: 625 KKVDVITYNTLIQSMCKVGDVDT-----ALHFFDDMEVKGLQPDAFTYNVVLSALSEAGR 679

Query: 213 VDEARGLLQQMKAKG 227
            +EA  +L ++   G
Sbjct: 680 SEEAHNMLHKLADSG 694



 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 58/141 (41%), Gaps = 5/141 (3%)

Query: 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
           G   +AL   + ++  G  PD V +  ++ A+   G   EA  +  RM   G+AP   TY
Sbjct: 222 GTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTY 281

Query: 161 AVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
             L+   A         +  A K +  M   G  P+  TY  +     +A KVDEA  L 
Sbjct: 282 NTLVSAFARLG-----WIKQATKVVESMTAYGFEPDLRTYNVLAMGLCQAGKVDEAFRLK 336

Query: 221 QQMKAKGFVPDEKAVKEALID 241
            +M+  G    +      L+D
Sbjct: 337 DEMERLGTALPDVVTYNTLVD 357



 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 34/151 (22%), Positives = 57/151 (37%), Gaps = 31/151 (20%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +  ++ K G    AL  F  ++ KG  PD   +  V+ A + AG+ +EA  +  ++  SG
Sbjct: 635 LIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEEAHNMLHKLADSG 694

Query: 153 VAPNAYTYAVLIKGLAAAAD-------------------------------GNAKILGDA 181
               ++   +L    A  AD                                    L +A
Sbjct: 695 KLSQSFACPLLKPSSADEADVKEHEGKPEAESSEKAQDNALETYMERLNGLCTGGQLKEA 754

Query: 182 QKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +  L EM+ KGM  +  TY  + E  ++ QK
Sbjct: 755 KAVLDEMMQKGMPVDCSTYITLMEGLIKRQK 785


>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
          Length = 746

 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 77/160 (48%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+F +M  +G++ NA+    + D L KD    +A QL +Q+  +G  P+ + + +++  
Sbjct: 485 EEVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQLISQMISEGLQPNNITYNSILTH 544

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y   G  K+A  +   M A+G   +  TY  LI GL  A  G  ++   A K L  M  K
Sbjct: 545 YCKQGDIKKAADILQTMTANGFEVDVVTYGTLINGLCKA--GRTQV---ALKLLRGMRIK 599

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           GMR     Y  V ++  R     +A  L ++M   G  PD
Sbjct: 600 GMRATPKAYNPVIQSLFRRNNTRDAMNLFREMTEVGEPPD 639



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 75/154 (48%), Gaps = 5/154 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +AL K G    AL+LF ++K  G  PD V +  +I+   S G+  +AL +   M ++G
Sbjct: 401 LINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAG 460

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
              +  TY  +I GL          + +A++   +M  +G+  NA T+  + +   + ++
Sbjct: 461 CPRSTVTYNTIIDGLCKKMR-----IEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKR 515

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
           +D+A  L+ QM ++G  P+       L     QG
Sbjct: 516 IDDANQLISQMISEGLQPNNITYNSILTHYCKQG 549



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 69/147 (46%), Gaps = 6/147 (4%)

Query: 95  DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           + L K+G   EA  +  Q+ ++G +PD+     +I A  S  + +EAL +  ++   G++
Sbjct: 333 NCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLS 392

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
           P+ YT+ +LI  L    D        A +   EM   G  P+  TY  + +      K+ 
Sbjct: 393 PDVYTFNILINALCKVGDPQL-----ALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLG 447

Query: 215 EARGLLQQMKAKGFVPDEKAVKEALID 241
           +A  LL++M++ G  P        +ID
Sbjct: 448 KALDLLKEMESAG-CPRSTVTYNTIID 473



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 78/191 (40%), Gaps = 33/191 (17%)

Query: 74  LQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           L+ ++ +M   G+  + V    +  AL +      A+ +  ++   G  PD    T +++
Sbjct: 169 LETVYSEMGERGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSSGVAPDETTFTTLMQ 228

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKG---LAAAADGNAKI---------- 177
            +   G  K ALRV  RML  G +P   T  VLI G   L    D    I          
Sbjct: 229 GFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLINGYCKLGRVEDALGYIQQEIANGFEP 288

Query: 178 -----------------LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
                            +G A K +  MV +G  P+  TY  V     +  +++EA+G+L
Sbjct: 289 DQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGIL 348

Query: 221 QQMKAKGFVPD 231
            QM  +G +PD
Sbjct: 349 NQMVERGCLPD 359



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 8/168 (4%)

Query: 75  QEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           QEI +    + +T N     + L ++G    AL++   +  +GH PDV  +  V+     
Sbjct: 280 QEIANGFEPDQITYNT--FVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCK 337

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            GQ +EA  +  +M+  G  P+  T+  LI  L +   GN   L +A     ++  KG+ 
Sbjct: 338 NGQLEEAKGILNQMVERGCLPDITTFNTLIVALCS---GNR--LEEALDLARQVTLKGLS 392

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDK 242
           P+  T+  +  A  +      A  L ++MK+ G  PDE      LID 
Sbjct: 393 PDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDE-VTYNTLIDN 439



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 66/124 (53%), Gaps = 5/124 (4%)

Query: 109 LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
           +++++ ++G  PDVV    +++A   A Q + A+ +   M +SGVAP+  T+  L++G  
Sbjct: 172 VYSEMGERGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSSGVAPDETTFTTLMQGFV 231

Query: 169 AAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
              +G+ K     +  ++EM   G  P   T   +   + +  +V++A G +QQ  A GF
Sbjct: 232 E--EGSIKAALRVKARMLEM---GCSPTKVTVNVLINGYCKLGRVEDALGYIQQEIANGF 286

Query: 229 VPDE 232
            PD+
Sbjct: 287 EPDQ 290



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +   K G   +AL    Q    G  PD + +   +      G    AL+V   M+  G
Sbjct: 261 LINGYCKLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEG 320

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+ +TY +++  L          L +A+  L +MV +G  P+  T+  +  A     +
Sbjct: 321 HDPDVFTYNIVVNCLCKNGQ-----LEEAKGILNQMVERGCLPDITTFNTLIVALCSGNR 375

Query: 213 VDEARGLLQQMKAKGFVPD 231
           ++EA  L +Q+  KG  PD
Sbjct: 376 LEEALDLARQVTLKGLSPD 394



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 7/142 (4%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D +   +I   M   G   + V    + + L K G T  AL+L   ++ KG      A+ 
Sbjct: 550 DIKKAADILQTMTANGFEVDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGMRATPKAYN 609

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
            VI++       ++A+ +F  M   G  P+A+TY ++ +GL     G+ +   +A  +L+
Sbjct: 610 PVIQSLFRRNNTRDAMNLFREMTEVGEPPDAFTYKIVFRGLCRGG-GSIR---EAFDFLL 665

Query: 187 EMVGKGMRPNAGTYTAVFEAFV 208
           EMV KG  P   ++  + E  +
Sbjct: 666 EMVDKGFIPEFSSFRMLAEGLL 687


>gi|255660878|gb|ACU25608.1| pentatricopeptide repeat-containing protein [Verbena hispida]
          Length = 484

 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 12/168 (7%)

Query: 78  FHKMRTEGL-----TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           F+KM +EG+     T N   M       G    A + F  +K +   PDVV +  +I  Y
Sbjct: 138 FNKMLSEGIEPTRHTFNV--MIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGY 195

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               + +EA + F+ M    + P   TY  LIKG  +        + D  + + EM G G
Sbjct: 196 YRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQ-----VDDXLRLVEEMKGFG 250

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
           ++PNA TY+ +      A+K+ EAR +L++M  K   P + ++   LI
Sbjct: 251 IKPNAITYSTLLPGLCNAEKMSEARVILKEMMDKYLAPTDNSIFMRLI 298



 Score = 70.9 bits (172), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 82/171 (47%), Gaps = 30/171 (17%)

Query: 91  VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           V M D+  K+G+  E++++F ++++ G    + ++ A+ +     G+   A R F +ML+
Sbjct: 84  VMMIDSYGKEGIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLS 143

Query: 151 SGVAPNAYTYAVLIKGLAAAA----------------------------DGNAKI--LGD 180
            G+ P  +T+ V+I G   +                             +G  ++  + +
Sbjct: 144 EGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEE 203

Query: 181 AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           A+KY +EM G+ + P   TYT + + +V   +VD+   L+++MK  G  P+
Sbjct: 204 AEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDXLRLVEEMKGFGIKPN 254



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 74/151 (49%), Gaps = 9/151 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
            F  M++  ++ + V    M +   +     EA + F ++K +   P VV +T +I+ Y 
Sbjct: 172 FFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYV 231

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
           S  Q  + LR+   M   G+ PNA TY+ L+ GL      NA+ + +A+  L EM+ K +
Sbjct: 232 SVDQVDDXLRLVEEMKGFGIKPNAITYSTLLPGLC-----NAEKMSEARVILKEMMDKYL 286

Query: 194 RP-NAGTYTAVFEAFVRAQKVDEARGLLQQM 223
            P +   +  +  +  ++  +D A  +L+ M
Sbjct: 287 APTDNSIFMRLISSHCKSGNLDAAADVLKAM 317


>gi|125569067|gb|EAZ10582.1| hypothetical protein OsJ_00414 [Oryza sativa Japonica Group]
          Length = 1003

 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 85/183 (46%), Gaps = 10/183 (5%)

Query: 55  PPYDPFKKVVDEEPTDPR--NLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQL 109
           P    +  ++D+   + R  +   +F +M   GL  N V    +  AL K G+  +AL L
Sbjct: 336 PNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCL 395

Query: 110 FAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169
           F +++DKG    V  + ++I  Y   G    A  +   M+  G+ P A +Y+ LI GL  
Sbjct: 396 FDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGLCR 455

Query: 170 AADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFV 229
             D     L    +   EM  +G+  N  T+TA+   F + +K+DEA  L  +M     +
Sbjct: 456 NGD-----LSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVI 510

Query: 230 PDE 232
           P+E
Sbjct: 511 PNE 513



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 67/142 (47%), Gaps = 5/142 (3%)

Query: 89  NAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRM 148
           N   M D L K  L  EA  L  ++ D G +P+V A+ A+I+      +  +A R+F  M
Sbjct: 305 NCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNALIDKLCKNERFDDADRLFKEM 364

Query: 149 LASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFV 208
              G+ PN  TYA+LI  L         ++ DA     +M  KG++     Y ++   + 
Sbjct: 365 AGRGLEPNEVTYAILIHALCKRG-----MIEDALCLFDKMRDKGIKVTVYPYNSLINGYC 419

Query: 209 RAQKVDEARGLLQQMKAKGFVP 230
           +   +D ARGLL  M  +G  P
Sbjct: 420 KQGSLDRARGLLSGMVKEGLTP 441



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 9/158 (5%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M+ +G+  + +    M DALSK+    +AL  + Q+   G+ P+ V HT +I    
Sbjct: 640 LFREMKEQGVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLC 699

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            +G    A  +   MLA  V PN +TY   +   A   D       +  K L   + +G 
Sbjct: 700 KSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGD------MEKAKDLHSAMLQGH 753

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             +  ++  + +   +A K+ EA  L+ ++   GF PD
Sbjct: 754 LASIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPD 791



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 8/161 (4%)

Query: 70  DPRNLQEIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D  +  E+  +M   G+  N      + +   KD    EA +LF ++ D   +P+ V   
Sbjct: 458 DLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNEVTFN 517

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
            +IE Y   G  ++A +++ +M+  G+ P+ YTY  LI GL   + G +K    A +++ 
Sbjct: 518 VMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRSLISGLCLTS-GVSK----ANEFVA 572

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
           ++       N  + TA+   F R  +  E   L  +M  +G
Sbjct: 573 DLENSYAVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRG 613



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 5/112 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L K G   EA+ L ++I + G  PD ++++ +I      G   +A  ++  ML  G
Sbjct: 763 LIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKG 822

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVF 204
           + P+   Y + I+      + + K LG        M+  G++PN  TY A+ 
Sbjct: 823 LKPDVVAYNIFIRWCNVHGESD-KALG----IYTNMIRSGVQPNWDTYRALL 869



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 8/147 (5%)

Query: 81  MRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ 137
           M  EGLT  A     +   L ++G     ++L  ++ ++G   +    TA+I  +    +
Sbjct: 434 MVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKK 493

Query: 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA 197
             EA R+F +M+ S V PN  T+ V+I+G      GN +    A +   +MV  G++P+ 
Sbjct: 494 MDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLV--GNIR---KAFQLYDQMVEMGLKPDN 548

Query: 198 GTYTAVFEAFVRAQKVDEARGLLQQMK 224
            TY ++         V +A   +  ++
Sbjct: 549 YTYRSLISGLCLTSGVSKANEFVADLE 575



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 60/128 (46%), Gaps = 13/128 (10%)

Query: 116 KGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNA 175
           +GH+  +V+   +I+    AG+ +EA+ +  ++  SG +P+  +Y+ +I  L    D N 
Sbjct: 751 QGHLASIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINK 810

Query: 176 KILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV----DEARGLLQQMKAKGFVPD 231
                A +   EM+ KG++P+   Y      F+R   V    D+A G+   M   G  P+
Sbjct: 811 -----AFELWNEMLYKGLKPDVVAYN----IFIRWCNVHGESDKALGIYTNMIRSGVQPN 861

Query: 232 EKAVKEAL 239
               +  L
Sbjct: 862 WDTYRALL 869



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 3/113 (2%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++  K+   G + + +    +   L K G  ++A +L+ ++  KG  PDVVA+   I   
Sbjct: 778 DLMSKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWC 837

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185
              G+  +AL ++  M+ SGV PN  TY  L+ G++     +       ++Y+
Sbjct: 838 NVHGESDKALGIYTNMIRSGVQPNWDTYRALLSGISLMLHYDFSCFRGTKQYI 890



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 77/175 (44%), Gaps = 21/175 (12%)

Query: 69  TDPRNL---QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDV 122
            + RNL   + +  +M +EG+  +AV    +   L K+    EA+++   + + G   D 
Sbjct: 209 CESRNLDGARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADE 268

Query: 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI-----KGLAAAADGNAKI 177
           V +  ++  +    + + ALR+   M+  G  P+    + +I     K L   A   A  
Sbjct: 269 VTYRTLVYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACK 328

Query: 178 LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           LGD           GM PN   Y A+ +   + ++ D+A  L ++M  +G  P+E
Sbjct: 329 LGDL----------GMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNE 373



 Score = 45.4 bits (106), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 5/127 (3%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A  LF ++   G   D   +TA I AY  +     A  + +RM + GV  +A  Y VL+ 
Sbjct: 182 ARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLVVRMESEGVKASAVPYNVLMY 241

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           GL      N ++  +A +    MV  G+  +  TY  +   F R ++++ A  +   M  
Sbjct: 242 GLCK----NMRV-QEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEELEMALRITHDMIR 296

Query: 226 KGFVPDE 232
            GFVP E
Sbjct: 297 LGFVPSE 303



 Score = 42.0 bits (97), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 29/134 (21%), Positives = 59/134 (44%), Gaps = 5/134 (3%)

Query: 99  KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAY 158
           ++G   E   L+ ++  +G   D+V+ T ++ A       +++  +F  M   GV P+  
Sbjct: 595 REGRFTETYHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDI 654

Query: 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218
            Y  +I  L+   +     +  A     +MV  G  PN  T+T +     ++  +  A  
Sbjct: 655 FYTCMIDALSKEEN-----MIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSAEL 709

Query: 219 LLQQMKAKGFVPDE 232
           L ++M A   +P++
Sbjct: 710 LCKEMLAGNVLPNK 723


>gi|15228767|ref|NP_191806.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181319|sp|Q9LZP3.1|PP293_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g62470, mitochondrial; Flags: Precursor
 gi|7340718|emb|CAB82961.1| putative protein [Arabidopsis thaliana]
 gi|34365579|gb|AAQ65101.1| At3g62470 [Arabidopsis thaliana]
 gi|332646835|gb|AEE80356.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 599

 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 72/136 (52%), Gaps = 6/136 (4%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA +++  + D+G  PD+VAH  ++E    + +  +A+++F  M + G  PN  +Y ++I
Sbjct: 316 EAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCPNVRSYTIMI 375

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           +     +     I     +Y  +MV  G++P+A  YT +   F   +K+D    LL++M+
Sbjct: 376 RDFCKQSSMETAI-----EYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQ 430

Query: 225 AKGFVPDEKAVKEALI 240
            KG  PD K    ALI
Sbjct: 431 EKGHPPDGKTYN-ALI 445



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 11/138 (7%)

Query: 72  RNLQE---IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAH 125
           RNL E   I++ M  +GL  + V    M + L +     +A++LF  +K KG  P+V ++
Sbjct: 312 RNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCPNVRSY 371

Query: 126 TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185
           T +I  +      + A+  F  M+ SG+ P+A  Y  LI G      G  K L    + L
Sbjct: 372 TIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGF-----GTQKKLDTVYELL 426

Query: 186 MEMVGKGMRPNAGTYTAV 203
            EM  KG  P+  TY A+
Sbjct: 427 KEMQEKGHPPDGKTYNAL 444



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 64/120 (53%), Gaps = 5/120 (4%)

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
           +L  ++++KGH PD   + A+I+  A+    + A R++ +M+ + + P+ +T+ +++K  
Sbjct: 424 ELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKSY 483

Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
             A +     +G A     EM+ KG+ P+  +YT +    +   K  EA   L++M  KG
Sbjct: 484 FMARNYE---MGRA--VWEEMIKKGICPDDNSYTVLIRGLIGEGKSREACRYLEEMLDKG 538



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 6/129 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A+ +F  +K       V     ++++   A  GKEA +V    L     PN  TY VL+ 
Sbjct: 248 AVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEA-QVLFDKLKERFTPNMMTYTVLLN 306

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G         + L +A +   +M+ +G++P+   +  + E  +R++K  +A  L   MK+
Sbjct: 307 GWC-----RVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKS 361

Query: 226 KGFVPDEKA 234
           KG  P+ ++
Sbjct: 362 KGPCPNVRS 370



 Score = 44.3 bits (103), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 38/180 (21%), Positives = 79/180 (43%), Gaps = 22/180 (12%)

Query: 49  TKSKLPPPYDPFKKVVDE-EPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEAL 107
           T+ KL   Y+  K++ ++  P D +    +   M  + +  +A ++++ + ++ +     
Sbjct: 415 TQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKMIQNEIE---- 470

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
                       P +     ++++Y  A   +    V+  M+  G+ P+  +Y VLI+GL
Sbjct: 471 ------------PSIHTFNMIMKSYFMARNYEMGRAVWEEMIKKGICPDDNSYTVLIRGL 518

Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
               +G ++   +A +YL EM+ KGM+     Y      F R  + +    L Q+ K  G
Sbjct: 519 IG--EGKSR---EACRYLEEMLDKGMKTPLIDYNKFAADFHRGGQPEIFEELAQRAKFSG 573


>gi|341605723|gb|AEK82964.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 75/146 (51%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+G  +E   +F  +  KG  P+V  +T +I+ YA +G  ++A+R+  RM+  G  P
Sbjct: 26  GLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKP 85

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY+V++ GL      N ++  +A  Y       G+  N+  Y+++     +A ++DE
Sbjct: 86  DVVTYSVVVNGLCK----NGRV-EEALDYFQTCRFNGLAINSMFYSSLIXGLGKAGRIDE 140

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      ALID
Sbjct: 141 AERLFEEMSEKGCTRDSYCYN-ALID 165



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 72/134 (53%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ D+G  PDVV ++ V+      G+ +EAL  F     +G
Sbjct: 58  LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNG 117

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +A N+  Y+ LI GL     G A  + +A++   EM  KG   ++  Y A+ +A  +  K
Sbjct: 118 LAINSMFYSSLIXGL-----GKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGK 172

Query: 213 VDEARGLLQQMKAK 226
           VDEA  L ++M+ +
Sbjct: 173 VDEAMXLFKRMEEE 186



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 5/123 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
            + L+ ++ +KG        + VI      G+  E   VF  M+  G  PN   Y VLI 
Sbjct: 1   CVALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLID 60

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G A +       + DA + L  M+ +G +P+  TY+ V     +  +V+EA    Q  + 
Sbjct: 61  GYAKSGS-----VEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRF 115

Query: 226 KGF 228
            G 
Sbjct: 116 NGL 118


>gi|41152688|dbj|BAD08213.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 762

 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 82/193 (42%), Gaps = 43/193 (22%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA------ 127
           +F KMR  GL  N V    +   L K G   +A+  F Q+ D+G  P+++ +T+      
Sbjct: 393 VFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLC 452

Query: 128 -----------------------------VIEAYASAGQGKEALRVFMRMLASGVAPNAY 158
                                        +I ++   G+  E+ ++F  M+  GV PN  
Sbjct: 453 IFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVI 512

Query: 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218
           TY+ LI G   A       + +A K L  M   GM+P+  TY  +   + R  ++D+A  
Sbjct: 513 TYSTLIDGYCLAGK-----MDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALA 567

Query: 219 LLQQMKAKGFVPD 231
           L ++M + G  P+
Sbjct: 568 LFKEMVSSGVSPN 580



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 71/142 (50%), Gaps = 8/142 (5%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDK---GHMPDVVAHTAVIEAYASAGQGKEALRVFMRML 149
           +   L  +  + EAL+L   + D    G  PDVV++T VI  +   G   +A   +  ML
Sbjct: 164 LLKGLCDENRSQEALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEML 223

Query: 150 ASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
              ++P+  TY+ +I   AA   G A  +  A + L  MV  G+ PN  TY ++   +  
Sbjct: 224 DRRISPDVVTYSSII---AALCKGQA--MDKAMEVLTTMVKNGVMPNCMTYNSILHGYCS 278

Query: 210 AQKVDEARGLLQQMKAKGFVPD 231
           +++  EA G L++M++ G  PD
Sbjct: 279 SEQPKEAIGFLKKMRSDGVEPD 300



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 79/164 (48%), Gaps = 8/164 (4%)

Query: 71  PRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P+       KMR++G+  + V    + D L K+G + EA ++F  +  +G  PD+  +  
Sbjct: 282 PKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCT 341

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           +++ YA+ G   E   +   M+ +G+ P+ + + +LI      A    + + +A     +
Sbjct: 342 LLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILI-----CAYAKQEKVDEAMLVFSK 396

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           M   G+ PN  TY AV     ++  VD+A    +QM  +G  P+
Sbjct: 397 MRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPN 440



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 73/157 (46%), Gaps = 10/157 (6%)

Query: 75  QEIFHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           +E+  +M   G+  N +  F+++     K+G   E+ +LF  +   G  P+V+ ++ +I+
Sbjct: 461 EELILEMLDRGICLNTI-FFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLID 519

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
            Y  AG+  EA ++   M + G+ P+  TY  LI G    +      + DA     EMV 
Sbjct: 520 GYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSR-----MDDALALFKEMVS 574

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
            G+ PN  TY  + +     ++   A+ L   +   G
Sbjct: 575 SGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSG 611



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 67/139 (48%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +   K+G + +A   + ++ D+   PDVV ++++I A        +A+ V   M+ +G
Sbjct: 202 VINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNG 261

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V PN  TY  ++ G  ++         +A  +L +M   G+ P+  TY ++ +   +  +
Sbjct: 262 VMPNCMTYNSILHGYCSSEQPK-----EAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGR 316

Query: 213 VDEARGLLQQMKAKGFVPD 231
             EAR +   M  +G  PD
Sbjct: 317 STEARKIFDSMTKRGLEPD 335



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 73/158 (46%), Gaps = 8/158 (5%)

Query: 78  FHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           +H+M    ++ + V    +  AL K     +A+++   +   G MP+ + + +++  Y S
Sbjct: 219 YHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCS 278

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
           + Q KEA+    +M + GV P+  TY  L+  L    +G +    +A+K    M  +G+ 
Sbjct: 279 SEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYL--CKNGRST---EARKIFDSMTKRGLE 333

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           P+  TY  + + +     + E   LL  M   G  PD 
Sbjct: 334 PDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDH 371



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 30/157 (19%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA+ +F++++  G  P+VV + AVI     +G   +A+  F +M+  G+ PN   Y  LI
Sbjct: 389 EAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLI 448

Query: 165 KGLAA------AADGNAKILG------------------------DAQKYLMEMVGKGMR 194
             L        A +   ++L                         +++K    MV  G++
Sbjct: 449 HSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVK 508

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           PN  TY+ + + +  A K+DEA  LL  M + G  PD
Sbjct: 509 PNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPD 545



 Score = 60.1 bits (144), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/221 (22%), Positives = 93/221 (42%), Gaps = 38/221 (17%)

Query: 60  FKKVVDEEPTDPRNLQ--EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIK 114
           F  ++     + R ++  ++F  M   G+  N +    + D     G   EA +L + + 
Sbjct: 479 FNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMF 538

Query: 115 DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL------A 168
             G  PD V +  +I  Y    +  +AL +F  M++SGV+PN  TY ++++GL      A
Sbjct: 539 SVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTA 598

Query: 169 AAAD----------------------GNAK--ILGDAQKYLMEMVGKGMRPNAGTYTAVF 204
           AA +                      G  K  +  +A +    +    ++    T+  + 
Sbjct: 599 AAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMI 658

Query: 205 EAFVRAQKVDEARGLLQQMKAKGFVPDEKA---VKEALIDK 242
            A ++  + DEA+ L   + A G VPD +    + E LI++
Sbjct: 659 GALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQ 699



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 65/143 (45%), Gaps = 9/143 (6%)

Query: 93  MFDALSKDGLTHEALQL-FAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRML-- 149
           +   L  D  T +A+ +   ++ +   MPDV + T +++      + +EAL +   M   
Sbjct: 128 LLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADD 187

Query: 150 -ASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFV 208
              G AP+  +Y  +I G     D +      A     EM+ + + P+  TY+++  A  
Sbjct: 188 RGGGSAPDVVSYTTVINGFFKEGDSDK-----AYSTYHEMLDRRISPDVVTYSSIIAALC 242

Query: 209 RAQKVDEARGLLQQMKAKGFVPD 231
           + Q +D+A  +L  M   G +P+
Sbjct: 243 KGQAMDKAMEVLTTMVKNGVMPN 265


>gi|359472741|ref|XP_003631192.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Vitis vinifera]
          Length = 708

 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 34/188 (18%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F KM   GL  N +    + + L K G   +A +L  ++  +G  P+V  HT +I+    
Sbjct: 282 FWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCK 341

Query: 135 AGQGKEALRVFMRMLAS-GVAPNAYTYAVLIKGLA------------------------- 168
            G  ++A R+F++++ S G  PN +TY  +I G                           
Sbjct: 342 KGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTN 401

Query: 169 ---AAADGNAKILGDAQKY-LMEMVGK-GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
                 DG+ K+    + Y LM+++GK G  PN  TY A+ +   +   +DEA  LL ++
Sbjct: 402 TYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKV 461

Query: 224 KAKGFVPD 231
              G   D
Sbjct: 462 SVHGLQAD 469



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 7/150 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DA  + G  +  +  F ++ + G  P+V+  TA+I      G  K+A  +   M+  G
Sbjct: 265 IIDAFCQKGYVNRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRG 324

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV-GKGMRPNAGTYTAVFEAFVRAQ 211
             PN YT+  LI GL             A +  +++V   G +PN  TYTA+   + +  
Sbjct: 325 WKPNVYTHTTLIDGLCKKGWTE-----KAFRLFLKLVRSDGYKPNVHTYTAMINGYCKED 379

Query: 212 KVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           K++ A  LL +M+ +G VP+       LID
Sbjct: 380 KLNRAEMLLSRMQEQGLVPNTNTYT-TLID 408



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 70/154 (45%), Gaps = 7/154 (4%)

Query: 79  HKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQG 138
           H ++ +G+T   +        D  T+ +L  F ++   G  PD+ ++T +I  +    Q 
Sbjct: 464 HGLQADGVTYTILMSVHCRQAD--TNRSLVFFNKMLKVGFTPDIHSYTTLISTFCRQKQM 521

Query: 139 KEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAG 198
           KE+ R+F   ++ G+ P   TY  +I G      GN  +   A K    M   G  P++ 
Sbjct: 522 KESERLFEEAVSLGLIPTKKTYTSMICGYCRY--GNTSL---AVKLFQRMSNHGCAPDSI 576

Query: 199 TYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           TY A+     +  K+D+AR L   M  KG  P E
Sbjct: 577 TYGALISGLCKESKLDDARNLYDAMMDKGLSPCE 610



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 77/161 (47%), Gaps = 9/161 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +F +M   G++ + V    M  A    G   EA +    + ++G + D    T +I+A
Sbjct: 209 ENMFVEMCQRGVSPDCVSFKLMVVACCNMGRVLEAERWLNAMVERGFIVDNATCTLIIDA 268

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +   G     +  F +M+  G+APN   +  LI GL     G+ K    A + L EMV +
Sbjct: 269 FCQKGYVNRVVGYFWKMVEMGLAPNVINFTALINGL--CKQGSIK---QAFELLEEMVRR 323

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEA-RGLLQQMKAKGFVPD 231
           G +PN  T+T + +   +    ++A R  L+ +++ G+ P+
Sbjct: 324 GWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPN 364



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 71/159 (44%), Gaps = 9/159 (5%)

Query: 77  IFHKM-RTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +F K+ R++G   N      M +   K+   + A  L ++++++G +P+   +T +I+ +
Sbjct: 351 LFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGH 410

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G    A  +   M   G +PN YTY  +I GL          L +A + L ++   G
Sbjct: 411 CKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGS-----LDEAYRLLNKVSVHG 465

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           ++ +  TYT +     R    + +     +M   GF PD
Sbjct: 466 LQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTPD 504



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 8/156 (5%)

Query: 77  IFHKMRTEGLT---NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
            F+KM   G T   ++   +     +     E+ +LF +    G +P    +T++I  Y 
Sbjct: 492 FFNKMLKVGFTPDIHSYTTLISTFCRQKQMKESERLFEEAVSLGLIPTKKTYTSMICGYC 551

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G    A+++F RM   G AP++ TY  LI GL   +      L DA+     M+ KG+
Sbjct: 552 RYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESK-----LDDARNLYDAMMDKGL 606

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFV 229
            P   T   +   + +      A  +L +++ + ++
Sbjct: 607 SPCEVTRLTLAYEYCKKDDSSTAINVLDRLEKRQWI 642


>gi|260780558|gb|ACX50825.1| AT1G03560-like protein [Capsella bursa-pastoris]
          Length = 176

 Score = 77.4 bits (189), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 76/146 (52%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+G  +E   +F  +  KG  P+V  +T +I+ YA +G  ++A+R+  RM+  G  P
Sbjct: 16  GLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGNVEDAIRLLHRMIDEGFKP 75

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  T++V++ GL      N ++  +A  Y       G+  N+  Y+++ +   +A ++DE
Sbjct: 76  DVVTFSVVVNGLCK----NGRV-EEALDYFQTCQFNGLAINSMFYSSLIDGLGKAGRIDE 130

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      ALID
Sbjct: 131 AERLFEEMSEKGCTRDSYCYN-ALID 155



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 71/132 (53%), Gaps = 5/132 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ D+G  PDVV  + V+      G+ +EAL  F     +G
Sbjct: 48  LIDGYAKSGNVEDAIRLLHRMIDEGFKPDVVTFSVVVNGLCKNGRVEEALDYFQTCQFNG 107

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +A N+  Y+ LI GL     G A  + +A++   EM  KG   ++  Y A+ +AF +  K
Sbjct: 108 LAINSMFYSSLIDGL-----GKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHGK 162

Query: 213 VDEARGLLQQMK 224
           VDEA  L ++M+
Sbjct: 163 VDEAMTLFKRME 174



 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 6/125 (4%)

Query: 124 AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQK 183
           A + VI      G+  E   VF  M+  G  PN   Y VLI G A +  GN +   DA +
Sbjct: 9   AFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKS--GNVE---DAIR 63

Query: 184 YLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKR 243
            L  M+ +G +P+  T++ V     +  +V+EA    Q  +  G   +      +LID  
Sbjct: 64  LLHRMIDEGFKPDVVTFSVVVNGLCKNGRVEEALDYFQTCQFNGLAIN-SMFYSSLIDGL 122

Query: 244 GQGFR 248
           G+  R
Sbjct: 123 GKAGR 127


>gi|255660814|gb|ACU25576.1| pentatricopeptide repeat-containing protein [Junellia spathulata]
          Length = 418

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 109/237 (45%), Gaps = 15/237 (6%)

Query: 2   AATAILRWLLHSPSPKRS-LRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPF 60
           +A+A+   +L +   +RS + + +  + A L+      + +  +  +  + K   P+D  
Sbjct: 47  SASAVFAAILETRGTQRSDIYVFSGLITAYLESGFLRDAIECXR--LTKEHKFRVPFDTC 104

Query: 61  KKVVDEEPTDPRNLQEI--FHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIK 114
           +KV+ E     +  + +  F++   E     ++  F+ L     K+G    A  +F  I 
Sbjct: 105 RKVL-EHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAIT 163

Query: 115 DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174
             G  P VV+   ++  Y   G   E  R+   M ASGV P+ YTY+VLI GL   +   
Sbjct: 164 KWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESK-- 221

Query: 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              + DA +   EM+  G+ PN  T+T + +   +  +VD A  + +QM ++   PD
Sbjct: 222 ---MDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 275



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 81/201 (40%), Gaps = 35/201 (17%)

Query: 63  VVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM 119
           +  E   D  N  E+F +M   GL  N V    + D   K+G    A++++ Q+  +   
Sbjct: 216 LCKESKMDDAN--ELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 273

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD------- 172
           PD++ +  +I      G  K+A  +   M   G+ P+  TY  LI G     D       
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEY 333

Query: 173 ---------------GNAKILG--------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
                            A I G        DA+K L EM+  G++   GTYT +   F +
Sbjct: 334 RKIMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKLEIGTYTMIINEFCK 393

Query: 210 AQKVDEARGLLQQMKAKGFVP 230
              V     L+++M+  G+VP
Sbjct: 394 KGDVWTGSKLMKEMQRDGYVP 414



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 65/124 (52%), Gaps = 5/124 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K+    +A +LF ++ D G +P+ V  T +I+ +   G+   A+ ++ +ML+  
Sbjct: 212 LINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQS 271

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           ++P+  TY  LI GL    D     L  AQ  + EM  KG++P+  TYT + +   +   
Sbjct: 272 LSPDLITYNTLIYGLCKKGD-----LKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGD 326

Query: 213 VDEA 216
           ++ A
Sbjct: 327 LETA 330


>gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 546

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 80/158 (50%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           I  +MR +G+  N V    + D   KD     A+++FA++  +G  P+VV + ++I    
Sbjct: 223 ILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLC 282

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
           + G+  EA  +  +M+ S + PN  T+  L+ G         K++  A +   +M  +G+
Sbjct: 283 NNGKVNEATALRDQMVNSCLKPNIITHNALLNGFCK-----NKMVKQAGELFDDMPKQGI 337

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            PN  TY  + +A+ + + +++A  L + M  KG  PD
Sbjct: 338 TPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVCPD 375



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 88/208 (42%), Gaps = 46/208 (22%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDV---------- 122
           E+F  M  +G+T N      + DA  KD    +A  L+  +  KG  PDV          
Sbjct: 327 ELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGL 386

Query: 123 -------------------------VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA 157
                                    + +  +I++  + G+ K+ALR+   M   G+ P+ 
Sbjct: 387 CRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQ 446

Query: 158 YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
            TY  +I G     +  A +   +Q   ME VG+    N  TY  + + F +  K+++A 
Sbjct: 447 LTYNTMIDGYCKEGNLRAALNLRSQ---MEKVGR--LANVATYNVLIKGFCKKDKLEDAN 501

Query: 218 GLLQQMKAKGFVPDE---KAVKEALIDK 242
           GLL +M  KG +P+    + V E +++K
Sbjct: 502 GLLNEMLEKGLIPNRMTYEIVTEEMMEK 529



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 7/147 (4%)

Query: 86  LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVF 145
           +T+NA  + +   K+ +  +A +LF  +  +G  P+V  +  +I+AY      ++A  ++
Sbjct: 307 ITHNA--LLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALY 364

Query: 146 MRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFE 205
             ML  GV P+  TY  LI GL    D     L  A+  + EM  K ++ +  TY  + +
Sbjct: 365 RIMLGKGVCPDVSTYNCLIAGLCRKGD-----LEAARNLVSEMDTKHLKADLITYNILID 419

Query: 206 AFVRAQKVDEARGLLQQMKAKGFVPDE 232
           +     ++ +A  LL +M  KG  P +
Sbjct: 420 SLCNKGEMKKALRLLDEMCRKGLKPSQ 446



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/139 (32%), Positives = 61/139 (43%), Gaps = 21/139 (15%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D+L   G   +AL+L  ++  KG  P  + +  +I+ Y   G  + AL +  +M   G
Sbjct: 417 LIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVG 476

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
              N  TY VLIKG           L DA   L EM+ KG+ PN  TY  V E       
Sbjct: 477 RLANVATYNVLIKGFCKKDK-----LEDANGLLNEMLEKGLIPNRMTYEIVTE------- 524

Query: 213 VDEARGLLQQMKAKGFVPD 231
                    +M  KGFVPD
Sbjct: 525 ---------EMMEKGFVPD 534



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 72/162 (44%), Gaps = 11/162 (6%)

Query: 76  EIFHKMRTEGLTNNAVKM------FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           +I   M+  G++ N +        +  + K G  ++A  +  +++  G  P+ V    +I
Sbjct: 184 DIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKADAILKEMRADGICPNEVTFNILI 243

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
           + +        A++VF  M   GV PN  TY  LI GL      N K+  +A     +MV
Sbjct: 244 DGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLC----NNGKV-NEATALRDQMV 298

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              ++PN  T+ A+   F + + V +A  L   M  +G  P+
Sbjct: 299 NSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPN 340



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 48/234 (20%), Positives = 95/234 (40%), Gaps = 33/234 (14%)

Query: 13  SPSPKRSLRI-------TNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKKVVD 65
           + SPK++L++       T +  N T  RS    S +P        S++  P   F     
Sbjct: 22  ASSPKKALQLRLRSSSETGSNNNKTSSRSNIGQSSKPI-------SRVQTPLLSFINYST 74

Query: 66  EEPTDPRNLQEIFHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIKDKGHMPD 121
           +E T      +I   +  +    N++ + D L    +K+  T    + F +  D G    
Sbjct: 75  QEQT------QILLSVSGDSFCANSI-IVDILVWAYAKNLRTRLGFEAFKRASDYGLKLS 127

Query: 122 VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDA 181
           V +   ++      G+  +   V+  M+   + P   ++ ++I GL          L  A
Sbjct: 128 VTSCNPLMSGLVKVGEIGDMEFVYKEMIRRRIEPTLISFNIVINGLCKVGK-----LNKA 182

Query: 182 QKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE---ARGLLQQMKAKGFVPDE 232
              + +M  +G+  N  TY  + + + +  K+ +   A  +L++M+A G  P+E
Sbjct: 183 GDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKADAILKEMRADGICPNE 236



 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 2/112 (1%)

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
           P +++   VI      G+  +A  +   M   GV+ N  TY  LI G      G    + 
Sbjct: 161 PTLISFNIVINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKM--GKIGKMY 218

Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            A   L EM   G+ PN  T+  + + F + + V  A  +  +M  +G  P+
Sbjct: 219 KADAILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPN 270


>gi|224077524|ref|XP_002305285.1| predicted protein [Populus trichocarpa]
 gi|222848249|gb|EEE85796.1| predicted protein [Populus trichocarpa]
          Length = 523

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 75/163 (46%), Gaps = 8/163 (4%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +++F +MR  G   + +    + +AL K G   EA ++F +I   G  PD  ++   I A
Sbjct: 237 RKVFDEMRGRGCALDVLAYNSLLEALCKGGNVDEAYKMFREIGSHGVEPDACSYAIFIRA 296

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y  A        V  RM    + PN +TY  +IK L      N K+  DA + L EM+ +
Sbjct: 297 YCEANNIHSVFSVLDRMKRYDLVPNVFTYNCIIKKLCK----NGKV-EDAYQLLHEMMER 351

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
           G+ P+A +Y  +        +V+ A  L+  M     +PD  +
Sbjct: 352 GVSPDAWSYNTILAYHCEHSEVNRATKLISIMVKDNCLPDRHS 394



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 69/129 (53%), Gaps = 9/129 (6%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA ++F +++ +G   DV+A+ +++EA    G   EA ++F  + + GV P+A +YA+ I
Sbjct: 235 EARKVFDEMRGRGCALDVLAYNSLLEALCKGGNVDEAYKMFREIGSHGVEPDACSYAIFI 294

Query: 165 KGLAAAADGNA--KILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
           +    A + ++   +L   ++Y        + PN  TY  + +   +  KV++A  LL +
Sbjct: 295 RAYCEANNIHSVFSVLDRMKRY-------DLVPNVFTYNCIIKKLCKNGKVEDAYQLLHE 347

Query: 223 MKAKGFVPD 231
           M  +G  PD
Sbjct: 348 MMERGVSPD 356



 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 31/152 (20%), Positives = 66/152 (43%), Gaps = 8/152 (5%)

Query: 97  LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
           L K+G   +A QL  ++ ++G  PD  ++  ++  +    +   A ++   M+     P+
Sbjct: 332 LCKNGKVEDAYQLLHEMMERGVSPDAWSYNTILAYHCEHSEVNRATKLISIMVKDNCLPD 391

Query: 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ-KVDE 215
            ++Y +L+K L             A +    M  +G  P+  TY+ +     + + K++E
Sbjct: 392 RHSYNMLLKLLVRVGR-----FDRATEIWESMGERGFYPSVSTYSVMIHGLCKKKGKLEE 446

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALIDKRGQGF 247
           A    + M  +G  P    ++  ++  R  GF
Sbjct: 447 ACRYFETMIDEGIPPYASTIE--MLRNRLIGF 476


>gi|326525088|dbj|BAK07814.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 539

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 80/160 (50%), Gaps = 10/160 (6%)

Query: 76  EIFHKMRT--EGLTNNAV--KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           E+F +M     G+ + AV   +  ALSK  L  EA  LF   K     PDVV +T ++ A
Sbjct: 195 ELFRRMEEYGAGVPDPAVLASLLGALSKKRLAGEAQALFDSYKSV-FPPDVVLYTTLVHA 253

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +  AG   +A +VF  M  +G+ PN YTY  +I  +  A       +  AQ+ L +M+  
Sbjct: 254 WCRAGCLDKAEQVFAEMQQAGIMPNVYTYTSVIDAMYRAGQ-----VPRAQELLCQMMET 308

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G  PN  T+ A+  A V+A + ++   +  QM+  G  PD
Sbjct: 309 GCPPNTATFNAIMRAHVKAGRSEQVLQVHNQMRQLGCDPD 348



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 76/160 (47%), Gaps = 6/160 (3%)

Query: 75  QEIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +++F +M+  G+  N      + DA+ + G    A +L  Q+ + G  P+     A++ A
Sbjct: 264 EQVFAEMQQAGIMPNVYTYTSVIDAMYRAGQVPRAQELLCQMMETGCPPNTATFNAIMRA 323

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +  AG+ ++ L+V  +M   G  P+  TY  L++        N   L  A K L +M+ K
Sbjct: 324 HVKAGRSEQVLQVHNQMRQLGCDPDIITYNFLMETHCGKGQSN---LDAAMKVLAKMIAK 380

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G  P+  T+  + +  +    V+ AR L ++M+     P+
Sbjct: 381 GCIPDCHTFNPMLKLVLGTGNVEAARRLYERMQELQCKPN 420



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 72/144 (50%), Gaps = 13/144 (9%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +  A  + G   +A Q+FA+++  G MP+V  +T+VI+A   AGQ   A  +  +M+ +G
Sbjct: 250 LVHAWCRAGCLDKAEQVFAEMQQAGIMPNVYTYTSVIDAMYRAGQVPRAQELLCQMMETG 309

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM---EMVGKGMRPNAGTYTAVFEAFV- 208
             PN  T+  +++    A        G +++ L    +M   G  P+  TY  + E    
Sbjct: 310 CPPNTATFNAIMRAHVKA--------GRSEQVLQVHNQMRQLGCDPDIITYNFLMETHCG 361

Query: 209 RAQ-KVDEARGLLQQMKAKGFVPD 231
           + Q  +D A  +L +M AKG +PD
Sbjct: 362 KGQSNLDAAMKVLAKMIAKGCIPD 385



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 64/169 (37%), Gaps = 30/169 (17%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M D L+K      A  L  +++++          A+I  Y  AG   EA  +F RM   G
Sbjct: 145 MIDLLAKHHHFPLARHLLDEMRERSIPVSSQVILAIIRRYVRAGMSPEASELFRRMEEYG 204

Query: 153 V-APNAYTYAVLIKGLA-----------------------------AAADGNAKILGDAQ 182
              P+    A L+  L+                               A   A  L  A+
Sbjct: 205 AGVPDPAVLASLLGALSKKRLAGEAQALFDSYKSVFPPDVVLYTTLVHAWCRAGCLDKAE 264

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +   EM   G+ PN  TYT+V +A  RA +V  A+ LL QM   G  P+
Sbjct: 265 QVFAEMQQAGIMPNVYTYTSVIDAMYRAGQVPRAQELLCQMMETGCPPN 313



 Score = 45.8 bits (107), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 66/142 (46%), Gaps = 8/142 (5%)

Query: 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
           G    A +L+ ++++    P+VV +  +++ +         LR+   M A GV PN  TY
Sbjct: 400 GNVEAARRLYERMQELQCKPNVVTYNLLMKLFNKEKSMDMVLRIKKDMDAQGVEPNVNTY 459

Query: 161 AVLIKGLAAAADGNAKILGDAQKYLMEMV-GKGMRPNAGTYTAVFEAFVRAQKVDEARGL 219
             LI+       GN +    A   L EMV  K ++P    Y  V     +A ++ +   L
Sbjct: 460 GALIESF--CGRGNWR---RAHATLREMVEEKSLKPTKPVYDMVLMLLRKAGQLRKHEEL 514

Query: 220 LQQMKAKGFV--PDEKAVKEAL 239
           ++ M  +GF+  P E A+ +A+
Sbjct: 515 VELMADRGFIKRPSEDALWKAV 536



 Score = 45.8 bits (107), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 8/143 (5%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A+++ A++  KG +PD      +++     G  + A R++ RM      PN  TY +L+K
Sbjct: 370 AMKVLAKMIAKGCIPDCHTFNPMLKLVLGTGNVEAARRLYERMQELQCKPNVVTYNLLMK 429

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
                     K +    +   +M  +G+ PN  TY A+ E+F        A   L++M  
Sbjct: 430 LF-----NKEKSMDMVLRIKKDMDAQGVEPNVNTYGALIESFCGRGNWRRAHATLREMVE 484

Query: 226 KGFVPDEKAVKE---ALIDKRGQ 245
           +  +   K V +    L+ K GQ
Sbjct: 485 EKSLKPTKPVYDMVLMLLRKAGQ 507


>gi|297821162|ref|XP_002878464.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324302|gb|EFH54723.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 628

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 69/129 (53%), Gaps = 5/129 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA +++  + D+G  PD+VAH  ++E    + +  +A+++F  M + G  PN  +Y ++I
Sbjct: 325 EAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCPNVRSYTIMI 384

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           +     +     I     +Y  +MV  G++P+A  YT +   F   +K+D    LL++M+
Sbjct: 385 RDFCKQSSMETAI-----EYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQ 439

Query: 225 AKGFVPDEK 233
            KG  PD K
Sbjct: 440 EKGHPPDGK 448



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 11/158 (6%)

Query: 72  RNLQE---IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAH 125
           RNL E   I++ M  +GL  + V    M + L +     +A++LF  +K KG  P+V ++
Sbjct: 321 RNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCPNVRSY 380

Query: 126 TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185
           T +I  +      + A+  F  M+ SG+ P+A  Y  LI G      G  K L    + L
Sbjct: 381 TIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGF-----GTQKKLDTVYELL 435

Query: 186 MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
            EM  KG  P+  TY A+ +     +  + A  +  +M
Sbjct: 436 KEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKM 473



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 64/120 (53%), Gaps = 5/120 (4%)

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
           +L  ++++KGH PD   + A+I+  A+    + A R++ +M+ + + P+ +T+ +++K  
Sbjct: 433 ELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKSY 492

Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
             A +     +G A     EM+ KG+ P+  +YT +    +   K  EA   L++M  KG
Sbjct: 493 FMARNYE---MGSA--VWDEMIKKGICPDDNSYTVLIRGLIGEGKSREACRYLEEMLDKG 547



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 62/130 (47%), Gaps = 6/130 (4%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +A+ +F  +K       V     ++++   A  GKEA +V    L     PN  TY VL+
Sbjct: 256 KAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEA-QVLFDKLKERFTPNMMTYTVLL 314

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            G     +     L +A +   +M+ +G++P+   +  + E  +R++K  +A  L   MK
Sbjct: 315 NGWCRVRN-----LIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMK 369

Query: 225 AKGFVPDEKA 234
           +KG  P+ ++
Sbjct: 370 SKGPCPNVRS 379



 Score = 43.1 bits (100), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 31/147 (21%), Positives = 69/147 (46%), Gaps = 22/147 (14%)

Query: 49  TKSKLPPPYDPFKKVVDE-EPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEAL 107
           T+ KL   Y+  K++ ++  P D +    +   M  + +  +A ++++ + ++ +     
Sbjct: 424 TQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKMIQNEIE---- 479

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
                       P +     ++++Y  A   +    V+  M+  G+ P+  +Y VLI+GL
Sbjct: 480 ------------PSIHTFNMIMKSYFMARNYEMGSAVWDEMIKKGICPDDNSYTVLIRGL 527

Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMR 194
               +G ++   +A +YL EM+ KGM+
Sbjct: 528 --IGEGKSR---EACRYLEEMLDKGMK 549


>gi|255660818|gb|ACU25578.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
          Length = 418

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 110/237 (46%), Gaps = 15/237 (6%)

Query: 2   AATAILRWLLHSPSPKRS-LRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPF 60
           +A+A+   +L +   +RS + + +  + A L+      + +  +  +  + K   P+D  
Sbjct: 47  SASAVFAAILETKGTQRSDIYVFSGLITAYLESGFLRDAIECYR--LTKEHKFRVPFDTC 104

Query: 61  KKVVDEEPTDPRNLQEI--FHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIK 114
           +KV+ E     +  + +  F++   E     ++  F+ L     K+G    A  +F  I 
Sbjct: 105 RKVL-EHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAIT 163

Query: 115 DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174
             G  P VV+   ++  Y   G   E  R+   M ASGV P+ YTY+VLI GL   +   
Sbjct: 164 KWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESK-- 221

Query: 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              L DA +   EM+  G+ PN+ ++T + +   +  +VD A  + +QM ++   PD
Sbjct: 222 ---LDDANELFDEMLDNGLVPNSVSFTTLIDGHCKDGRVDLAMEIYKQMLSQSLSPD 275



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 87/183 (47%), Gaps = 10/183 (5%)

Query: 53  LPPPYDPFKKVVDEEPTDPR-NL-QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEAL 107
           L P    F  ++D    D R +L  EI+ +M ++ L+ + +    +   L K+G   +A 
Sbjct: 237 LVPNSVSFTTLIDGHCKDGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKNGDLKQAQ 296

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
            L  ++  KG  PD + +T +I+     G  + A     RM+   +  +   Y  LI GL
Sbjct: 297 DLINEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGL 356

Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
               +G +    DA+K L EM+  G++P  GTYT +   F +   V     L+++M+  G
Sbjct: 357 CQ--EGRSV---DAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDG 411

Query: 228 FVP 230
           +VP
Sbjct: 412 YVP 414



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 79/158 (50%), Gaps = 6/158 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K+    +A +LF ++ D G +P+ V+ T +I+ +   G+   A+ ++ +ML+  
Sbjct: 212 LINGLCKESKLDDANELFDEMLDNGLVPNSVSFTTLIDGHCKDGRVDLAMEIYKQMLSQS 271

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           ++P+  TY  LI GL    D     L  AQ  + EM  KG++P+  TYT + +   +   
Sbjct: 272 LSPDLITYNTLIYGLCKNGD-----LKQAQDLINEMSMKGLKPDKITYTTLIDGSCKEGD 326

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGV 250
           ++ A    ++M  +    D+ A   ALI    Q  R V
Sbjct: 327 LETAFEYRKRMIKENIRLDDVAYT-ALISGLCQEGRSV 363


>gi|125548475|gb|EAY94297.1| hypothetical protein OsI_16066 [Oryza sativa Indica Group]
          Length = 602

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 10/171 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++  KM   G T N V    + + L +      A+ L +++K  G  PD+V +  +++  
Sbjct: 328 QLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGL 387

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
            SA Q  +A  +   M  +G  P+  T+  LI  L         ++ DA +   +M  KG
Sbjct: 388 CSAAQWVDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKG-----LMVDAIEVFKQMPDKG 442

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE--KAVKEALID 241
             PN+ TY+ +     +A K+D+A  L  +M  KGF PD+  + + E L D
Sbjct: 443 CTPNSITYSTIISGLAKATKLDQALELFNEMGHKGFNPDKIYQLLAECLND 493



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 64/140 (45%), Gaps = 5/140 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L + G   +AL +   +  +G  PDVV +  ++EA       ++A+ +   M A G
Sbjct: 173 LIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAEG 232

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN  TY VL+ G+    D     + DA + L  +   G +P+   Y  V +    A++
Sbjct: 233 CTPNNVTYNVLMDGMCGEGD-----VDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAER 287

Query: 213 VDEARGLLQQMKAKGFVPDE 232
             +A  L+ +M  +   P+E
Sbjct: 288 WGDADELVTEMLRENCPPNE 307



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/193 (21%), Positives = 83/193 (43%), Gaps = 12/193 (6%)

Query: 57  YDPFKKVVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQI 113
           Y+P    + E     R+   +   M   G   + V    + +A  K     +A++L   +
Sbjct: 170 YNPLIHTLCER-GQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAMELIDLM 228

Query: 114 KDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADG 173
           + +G  P+ V +  +++     G   +AL +   + + G  P+   Y  ++KGL +A   
Sbjct: 229 RAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSA--- 285

Query: 174 NAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD-- 231
             +  GDA + + EM+ +   PN  T+  V  +  R   + +A  LL++M   G   +  
Sbjct: 286 --ERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIV 343

Query: 232 -EKAVKEALIDKR 243
              A+   L ++R
Sbjct: 344 TYNAIINGLCEQR 356



 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 80/168 (47%), Gaps = 9/168 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F +M  +G T N++    +   L+K     +AL+LF ++  KG  PD + +  + E  
Sbjct: 433 EVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEMGHKGFNPDKI-YQLLAECL 491

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
                 +EA++   ++  SG++P+   Y  ++ GL    +G  +   D   Y   MV  G
Sbjct: 492 NDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCR--NGKTEFAIDIMAY---MVSSG 546

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
             P+  TY  + E       ++EAR LL ++ ++  + +     EAL+
Sbjct: 547 CMPDDLTYVILIEGLAYEGYLNEARELLIKLCSRDVLVNSLIKSEALL 594



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 8/125 (6%)

Query: 122 VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDA 181
           VVA+ A+ + Y  AG+  +A RV   M    V PNAYTY  LI  L          + DA
Sbjct: 135 VVAYGALTDGYCRAGRLGDARRVVGGM---PVQPNAYTYNPLIHTLCERGQ-----VRDA 186

Query: 182 QKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
              L +M+ +G  P+  TY  + EA  + +   +A  L+  M+A+G  P+       +  
Sbjct: 187 LSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAEGCTPNNVTYNVLMDG 246

Query: 242 KRGQG 246
             G+G
Sbjct: 247 MCGEG 251



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 13/115 (11%)

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
           P+   +  +I      GQ ++AL V   ML  G AP+  TY +L++         A   G
Sbjct: 165 PNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLE---------ATCKG 215

Query: 180 DAQKYLMEMV----GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
              +  ME++     +G  PN  TY  + +       VD+A  LL+ + + G  P
Sbjct: 216 RGYRQAMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKP 270


>gi|297802850|ref|XP_002869309.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297315145|gb|EFH45568.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1114

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 6/140 (4%)

Query: 93   MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
            + D LSK G  +EA QLF  + D G  P+   +  +I  +  AG+   A  +F RM+  G
Sbjct: 899  LIDGLSKSGRLYEAKQLFEGMSDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEG 958

Query: 153  VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            V P+  TY+VL+  L          + +   Y  E+   G+ P+   Y  +     +  +
Sbjct: 959  VRPDLKTYSVLVDCLCMVGR-----VDEGLHYFRELKESGLNPDVVCYNLIINGLGKFHR 1013

Query: 213  VDEARGLLQQM-KAKGFVPD 231
            ++EA  L  +M K++G  PD
Sbjct: 1014 LEEALVLFNEMKKSRGITPD 1033



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 80/163 (49%), Gaps = 8/163 (4%)

Query: 72  RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R  ++IF+ ++  GL  ++V    M    SK G   EA++L +++ +    PDV+   ++
Sbjct: 487 REAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMVENCCEPDVIVVNSL 546

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I     A +  EA ++FMRM    + P   TY  L+ GL      N KI  +A +    M
Sbjct: 547 INTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGK----NGKI-QEAIELFEGM 601

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           V KG  PN  T+  +F+   +  +V  A  +L +M   G VPD
Sbjct: 602 VQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPD 644



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/158 (28%), Positives = 78/158 (49%), Gaps = 8/158 (5%)

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           EIF  M + G+   A   +   D   K G +  AL+ F ++K KG  P++VA  A + + 
Sbjct: 421 EIFDNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSL 480

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           A AG+ +EA ++F  +   G+ P++ TY +++K  +   +     + +A K L EMV   
Sbjct: 481 AKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGE-----IDEAIKLLSEMVENC 535

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
             P+     ++     +A +VDEA  +  +MK     P
Sbjct: 536 CEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKP 573



 Score = 70.1 bits (170), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 50/160 (31%), Positives = 76/160 (47%), Gaps = 11/160 (6%)

Query: 77   IFHKMRTEG----LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
            +F +M  EG    L   +V + D L   G   E L  F ++K+ G  PDVV +  +I   
Sbjct: 950  LFKRMVKEGVRPDLKTYSV-LVDCLCMVGRVDEGLHYFRELKESGLNPDVVCYNLIINGL 1008

Query: 133  ASAGQGKEALRVFMRMLAS-GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
                + +EAL +F  M  S G+ P+ YTY  LI  L     G A ++ +A K   E+   
Sbjct: 1009 GKFHRLEEALVLFNEMKKSRGITPDLYTYNSLILNL-----GIAGMVEEAGKIYNEIQRA 1063

Query: 192  GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            G+ PN  T+ A+   +  + K + A  + Q M   GF P+
Sbjct: 1064 GLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPN 1103



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 78/170 (45%), Gaps = 12/170 (7%)

Query: 75  QEIFHKMRT-----EGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           +E+F KM+T     + +T   + + D  S +       Q +++++  GH+PDVV  T ++
Sbjct: 315 KEVFAKMKTGRHKPDRVT--YITLLDRFSDNRDLDSVNQFWSEMEKDGHVPDVVTFTILV 372

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
           +A   AG   EA      M   G+ PN +TY  LI GL          L DA +    M 
Sbjct: 373 DALCKAGNFGEAFAKLDVMRDQGILPNLHTYNTLICGLL-----RVHRLDDALEIFDNME 427

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
             G++P A TY    + + ++     A    ++MK KG  P+  A   +L
Sbjct: 428 SLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASL 477



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 8/154 (5%)

Query: 79  HKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQI-KDKGHMPDVVAHTAVIEAYASAGQ 137
           H+     +T+N V     L K G   +AL L+  +  D+   P    +  +I+  + +G+
Sbjct: 851 HECEPNTITHNIV--ISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGR 908

Query: 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA 197
             EA ++F  M   G  PN   Y +LI G   A + +A     A      MV +G+RP+ 
Sbjct: 909 LYEAKQLFEGMSDYGCRPNCAIYNILINGFGKAGEADA-----ACALFKRMVKEGVRPDL 963

Query: 198 GTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            TY+ + +      +VDE     +++K  G  PD
Sbjct: 964 KTYSVLVDCLCMVGRVDEGLHYFRELKESGLNPD 997



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 77/171 (45%), Gaps = 10/171 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           Q++F +++  G   +      + DA  K G   E  +++ ++      P+ + H  VI  
Sbjct: 807 QDVFLQVKNTGCIPDVATYNFLLDAYGKSGKIDELFEIYKEMSAHECEPNTITHNIVISG 866

Query: 132 YASAGQGKEALRVFMRMLAS-GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
              AG   +AL ++  +++    +P A TY  LI GL+ +       L +A++    M  
Sbjct: 867 LVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGR-----LYEAKQLFEGMSD 921

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
            G RPN   Y  +   F +A + D A  L ++M  +G  PD K     L+D
Sbjct: 922 YGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTY-SVLVD 971



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 70/145 (48%), Gaps = 5/145 (3%)

Query: 87  TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFM 146
           TN  + +F  LS  G   +A     ++++ G + +  ++  +I     +    EA+ V+ 
Sbjct: 155 TNTYLTIFKCLSVKGGLRQAPFALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYR 214

Query: 147 RMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEA 206
           RM+  G  P+  TY+ L+ GL     G  + +      L EM   G++PN  T+T     
Sbjct: 215 RMILDGFRPSLQTYSSLMVGL-----GKRRDIESVMGLLKEMETLGLKPNVYTFTICIRV 269

Query: 207 FVRAQKVDEARGLLQQMKAKGFVPD 231
             RA K++EA  +L++M  +G  PD
Sbjct: 270 LGRAGKINEAYEILKRMDDEGCGPD 294



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 8/165 (4%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D  ++  +  +M T GL  N          L + G  +EA ++  ++ D+G  PDVV +T
Sbjct: 240 DIESVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYT 299

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
            +I+A  +A +   A  VF +M      P+  TY  L+   +   D     L    ++  
Sbjct: 300 VLIDALCTARKLDCAKEVFAKMKTGRHKPDRVTYITLLDRFSDNRD-----LDSVNQFWS 354

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           EM   G  P+  T+T + +A  +A    EA   L  M+ +G +P+
Sbjct: 355 EMEKDGHVPDVVTFTILVDALCKAGNFGEAFAKLDVMRDQGILPN 399



 Score = 53.9 bits (128), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 5/127 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +AL++F  ++  G  P    +   I+ Y  +G    AL  F +M   G+APN       +
Sbjct: 418 DALEIFDNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASL 477

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
             LA A         +A++    +   G+ P++ TY  + + + +  ++DEA  LL +M 
Sbjct: 478 YSLAKAGRDR-----EAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMV 532

Query: 225 AKGFVPD 231
                PD
Sbjct: 533 ENCCEPD 539



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 9/127 (7%)

Query: 78   FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIK-DKGHMPDVVAHTAVIEAYA 133
            F +++  GL  + V    + + L K     EAL LF ++K  +G  PD+  + ++I    
Sbjct: 986  FRELKESGLNPDVVCYNLIINGLGKFHRLEEALVLFNEMKKSRGITPDLYTYNSLILNLG 1045

Query: 134  SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             AG  +EA +++  +  +G+ PN +T+  LI+G + +          A      MV  G 
Sbjct: 1046 IAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPE-----HAYAVYQTMVTGGF 1100

Query: 194  RPNAGTY 200
             PN GTY
Sbjct: 1101 SPNTGTY 1107



 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 59/125 (47%), Gaps = 6/125 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+G   EA++LF  +  KG  P+ +    + +      +   AL++  +M+  G  P
Sbjct: 584 GLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVP 643

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           + +TY  +I GL    +G  K   +A  +  +M  K + P+  T   +    V+A  +++
Sbjct: 644 DVFTYNTIIFGL--VKNGQVK---EAMCFFHQM-KKLVYPDFVTLCTLLPGVVKAGLIED 697

Query: 216 ARGLL 220
           A  ++
Sbjct: 698 AYKII 702



 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 35/63 (55%)

Query: 101  GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
            G+  EA +++ +I+  G  P+V    A+I  Y+ +G+ + A  V+  M+  G +PN  TY
Sbjct: 1048 GMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTY 1107

Query: 161  AVL 163
              L
Sbjct: 1108 EQL 1110



 Score = 39.3 bits (90), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 5/80 (6%)

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           GV P   TY +LI GL       A ++  AQ   +++   G  P+  TY  + +A+ ++ 
Sbjct: 782 GVQPKLPTYNLLIGGLL-----EADMIEIAQDVFLQVKNTGCIPDVATYNFLLDAYGKSG 836

Query: 212 KVDEARGLLQQMKAKGFVPD 231
           K+DE   + ++M A    P+
Sbjct: 837 KIDELFEIYKEMSAHECEPN 856


>gi|147771990|emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
          Length = 2021

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 45/158 (28%), Positives = 77/158 (48%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +FH+M   G   + V    + D+L K+    EA+ L   I+     PD+  +  +I+   
Sbjct: 402 LFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQVYNIIIDGMC 461

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG+ + A  +F  + + G+ P+ +TY ++I GL         +L +A K  MEM G   
Sbjct: 462 RAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRG-----LLNEANKLFMEMDGNDC 516

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            P+  TY  +   F++  +   A  LL++M A+GF  D
Sbjct: 517 SPDGCTYNTIARGFLQNNETLRAIQLLEEMLARGFSAD 554



 Score = 76.6 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 51/188 (27%), Positives = 84/188 (44%), Gaps = 33/188 (17%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F KM  EG   N V    + + L K G T  A++L   ++     PDVV +T++I++  
Sbjct: 157 LFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLC 216

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADG-----------NAKILGD-- 180
              Q  EA  +F +M+  G++P+ +TY  L+  L    +            N+KIL D  
Sbjct: 217 KDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVV 276

Query: 181 -----------------AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
                            A + +  M+ +G+ P+  TYT + +      ++DEA  +   M
Sbjct: 277 IFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMM 336

Query: 224 KAKGFVPD 231
             KGF PD
Sbjct: 337 VRKGFAPD 344



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/126 (31%), Positives = 60/126 (47%), Gaps = 5/126 (3%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A  + A+I   GH PD    T +I      G+  EAL +F +M+  G  PN  TY  LI 
Sbjct: 119 AFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNVVTYGTLIN 178

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           GL    + +A I     + L  M     +P+   YT++ ++  + ++V EA  L  QM  
Sbjct: 179 GLCKVGNTSAAI-----RLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVG 233

Query: 226 KGFVPD 231
           +G  PD
Sbjct: 234 QGISPD 239



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 7/138 (5%)

Query: 95  DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           DAL K+G   EA ++   +  +G  PDVV +T +++ +    +  EA++VF  M+  G A
Sbjct: 283 DALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFA 342

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLM-EMVGKGMRPNAGTYTAVFEAFVRAQKV 213
           P+  +Y  LI G         KI  D   YL  EM  K   P+  TY  +        ++
Sbjct: 343 PDVISYTTLINGYCKI----HKI--DKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRL 396

Query: 214 DEARGLLQQMKAKGFVPD 231
            +A  L  +M A+G +PD
Sbjct: 397 QDAIALFHEMVARGQMPD 414



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 55/217 (25%), Positives = 94/217 (43%), Gaps = 21/217 (9%)

Query: 21  RITNTRVNATLQRSLSSSSDQP-TKKYVNTKSKLPPPYDPFKKVVDEEPTDPRNLQEIFH 79
           ++ NT     L RS+   + QP    Y +    L           D + T+  NL   F 
Sbjct: 182 KVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSL---------CKDRQVTEAFNL---FS 229

Query: 80  KMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           +M  +G++ +      +  AL           L  Q+ +   +PDVV  + V++A    G
Sbjct: 230 QMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEG 289

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196
           +  EA  +   M+  GV P+  TY  L+ G    ++     + +A K    MV KG  P+
Sbjct: 290 KVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSE-----MDEAVKVFDMMVRKGFAPD 344

Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK 233
             +YT +   + +  K+D+A  L ++M  K ++PD K
Sbjct: 345 VISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTK 381



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 75/171 (43%), Gaps = 26/171 (15%)

Query: 79  HKMRTEGLTNNAVKMFDALSKDGLT-------------------HEALQLFAQIKDKGHM 119
           H +++E   + AVK+FD + + G                      +A+ LF ++  K  +
Sbjct: 320 HCLQSE--MDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWI 377

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
           PD   +  ++      G+ ++A+ +F  M+A G  P+  TY++L+  L        + L 
Sbjct: 378 PDTKTYNTLMYGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLC-----KNRHLE 432

Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           +A   L  +    + P+   Y  + +   RA +++ AR L   + +KG  P
Sbjct: 433 EAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHP 483



 Score = 43.1 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 5/127 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +AL  F ++      P +V    ++ + A        L +  +M + GV PN YT  +LI
Sbjct: 48  DALSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILI 107

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
                    +   +G A   L +++  G +P+  T+T +        K+ EA  L  +M 
Sbjct: 108 NSFC-----HLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMI 162

Query: 225 AKGFVPD 231
            +GF P+
Sbjct: 163 DEGFQPN 169


>gi|302784232|ref|XP_002973888.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
 gi|300158220|gb|EFJ24843.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
          Length = 399

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 69/137 (50%), Gaps = 9/137 (6%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
           AL K G   EA+++   +KD    PDVV    +I     AG+  EA +V   M  SG A 
Sbjct: 63  ALCKSGKVPEAMEVVKNMKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAA 122

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           N  TY  LI GL++A        G + + ++ M G    P+  TY A+   F ++ ++D 
Sbjct: 123 NLVTYNTLINGLSSA--------GRSGEAVLVMQGMTTTPDTQTYNAIIHGFCKSGEIDR 174

Query: 216 ARGLLQQMKAK-GFVPD 231
           A G L++MK + G  PD
Sbjct: 175 AYGFLEEMKQRAGCSPD 191



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 72/144 (50%), Gaps = 12/144 (8%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A +L + + + G  PDVV ++ +I+     G   +   +  +M++ G  P+  TY VL+ 
Sbjct: 247 ARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVT 306

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           GL  A       + +A + +  M+  G  PNA TY+ VF+   +  K+D A  LL  ++ 
Sbjct: 307 GLCKAGK-----MVEACRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRD 361

Query: 226 KGFVPDEKA-------VKEALIDK 242
           KG + D  A       VK+ L+D+
Sbjct: 362 KGRITDVVAFEALLLSVKKRLLDR 385



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 79/192 (41%), Gaps = 38/192 (19%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           Q++  +M   G   N V    + + LS  G + EA+ +   +      PD   + A+I  
Sbjct: 109 QQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGMTTT---PDTQTYNAIIHG 165

Query: 132 YASAGQGKEALRVFMRMLA-SGVAPNAYTYAVLIKGLAAAA------------------- 171
           +  +G+   A      M   +G +P+ +TY++LI GL  ++                   
Sbjct: 166 FCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEMIGRKDCC 225

Query: 172 ----------DGNAKI--LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGL 219
                     DG  K   L  A++ L  M+  G  P+  TY+ + +   R   VD+   L
Sbjct: 226 ASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFAL 285

Query: 220 LQQMKAKGFVPD 231
           L++M ++G  PD
Sbjct: 286 LEKMVSRGCKPD 297



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 5/114 (4%)

Query: 60  FKKVVD--EEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIK 114
           F  +VD   +  D    +E+   M   G   + V    + D L + G   +   L  ++ 
Sbjct: 231 FNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMV 290

Query: 115 DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
            +G  PDVV +T ++     AG+  EA R+  RML  G  PNA TY+++  GL 
Sbjct: 291 SRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSLVFDGLC 344


>gi|15237662|ref|NP_201237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171655|sp|Q9FMF6.1|PP444_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g64320, mitochondrial; Flags: Precursor
 gi|9759408|dbj|BAB09863.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010486|gb|AED97869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 730

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 73/160 (45%), Gaps = 8/160 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+ H MR +G   N      + D   K G   EA  +  ++   G  P+ V    +I A+
Sbjct: 410 EVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAF 469

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               +  EA+ +F  M   G  P+ YT+  LI GL    +     +  A   L +M+ +G
Sbjct: 470 CKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDE-----IKHALWLLRDMISEG 524

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           +  N  TY  +  AF+R  ++ EAR L+ +M  +G   DE
Sbjct: 525 VVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDE 564



 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 76/157 (48%), Gaps = 8/157 (5%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           + ++M  +GL  N V    +  A  K+    EA+++F ++  KG  PDV    ++I    
Sbjct: 446 VLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLC 505

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
              + K AL +   M++ GV  N  TY  LI       +     + +A+K + EMV +G 
Sbjct: 506 EVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGE-----IKEARKLVNEMVFQGS 560

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
             +  TY ++ +   RA +VD+AR L ++M   G  P
Sbjct: 561 PLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAP 597



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 64/146 (43%), Gaps = 10/146 (6%)

Query: 91  VKMFDALSKDGLTHEALQ-----LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVF 145
           + +F+ L    +TH  L      L   +   G +PDV  + ++I  Y   G    AL V 
Sbjct: 353 IVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVL 412

Query: 146 MRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFE 205
             M   G  PN Y+Y +L+ G           + +A   L EM   G++PN   +  +  
Sbjct: 413 HDMRNKGCKPNVYSYTILVDGFCKLGK-----IDEAYNVLNEMSADGLKPNTVGFNCLIS 467

Query: 206 AFVRAQKVDEARGLLQQMKAKGFVPD 231
           AF +  ++ EA  + ++M  KG  PD
Sbjct: 468 AFCKEHRIPEAVEIFREMPRKGCKPD 493



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 10/140 (7%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS- 151
           + + L K G    A  LF +I      P++V    +I  + + G+  +A  V   M+ S 
Sbjct: 328 LMNGLCKIGRVDAAKDLFYRIPK----PEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSY 383

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           G+ P+  TY  LI G          ++G A + L +M  KG +PN  +YT + + F +  
Sbjct: 384 GIVPDVCTYNSLIYGYWKEG-----LVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLG 438

Query: 212 KVDEARGLLQQMKAKGFVPD 231
           K+DEA  +L +M A G  P+
Sbjct: 439 KIDEAYNVLNEMSADGLKPN 458



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 82/158 (51%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +   M +EG+  N V    + +A  + G   EA +L  ++  +G   D + + ++I+   
Sbjct: 516 LLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLC 575

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG+  +A  +F +ML  G AP+  +  +LI GL  +      ++ +A ++  EMV +G 
Sbjct: 576 RAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSG-----MVEEAVEFQKEMVLRGS 630

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            P+  T+ ++     RA ++++   + ++++A+G  PD
Sbjct: 631 TPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPD 668



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 64/133 (48%), Gaps = 5/133 (3%)

Query: 99  KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAY 158
           K+GL   AL++   +++KG  P+V ++T +++ +   G+  EA  V   M A G+ PN  
Sbjct: 401 KEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTV 460

Query: 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218
            +  LI             + +A +   EM  KG +P+  T+ ++        ++  A  
Sbjct: 461 GFNCLISAFCKEHR-----IPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALW 515

Query: 219 LLQQMKAKGFVPD 231
           LL+ M ++G V +
Sbjct: 516 LLRDMISEGVVAN 528



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/227 (19%), Positives = 102/227 (44%), Gaps = 13/227 (5%)

Query: 21  RITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKKVVDEEPTDP--RNLQEIF 78
           +IT  ++   L+  L+ S+      +  +++     +D ++ ++ +   +   + +  + 
Sbjct: 75  KITPFQLYKLLELPLNVSTSMELFSWTGSQNGYRHSFDVYQVLIGKLGANGEFKTIDRLL 134

Query: 79  HKMRTEGLTNNAVKMFDALSKD----GLTHEALQLFAQIKD-KGHMPDVVAHTAVIEAYA 133
            +M+ EG+      +F ++ +D    G   +  +L  ++++     P   ++  V+E   
Sbjct: 135 IQMKDEGIVFKE-SLFISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILV 193

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
           S    K A  VF  ML+  + P  +T+ V++K   A  +     +  A   L +M   G 
Sbjct: 194 SGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNE-----IDSALSLLRDMTKHGC 248

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
            PN+  Y  +  +  +  +V+EA  LL++M   G VPD +   + ++
Sbjct: 249 VPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVIL 295



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 33/146 (22%), Positives = 70/146 (47%), Gaps = 8/146 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +F KM  +G   + +    + + L + G+  EA++   ++  +G  PD+V   ++I  
Sbjct: 584 RSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLING 643

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              AG+ ++ L +F ++ A G+ P+  T+  L+  L          + DA   L E +  
Sbjct: 644 LCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGG-----FVYDACLLLDEGIED 698

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEAR 217
           G  PN  T++ + ++ +  + +D  R
Sbjct: 699 GFVPNHRTWSILLQSIIPQETLDRRR 724



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 5/113 (4%)

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
           P +     V++A+ +  +   AL +   M   G  PN+  Y  LI  L+     N     
Sbjct: 215 PTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVN----- 269

Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           +A + L EM   G  P+A T+  V     +  +++EA  ++ +M  +GF PD+
Sbjct: 270 EALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDD 322


>gi|388499386|gb|AFK37759.1| unknown [Lotus japonicus]
          Length = 500

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 113/249 (45%), Gaps = 14/249 (5%)

Query: 5   AILRWLLHSPSPKRSLRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKKVV 64
           +I RW+L   S K+ +   N  ++A  Q+ L   ++    + +  +++  P  D +  ++
Sbjct: 147 SICRWILLRSSFKQDVICYNLLIDAFGQKFLYKEAESTYLQLL--EARCIPNEDTYALLI 204

Query: 65  DEEPTDP--RNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHM 119
                       + +F +M+  GL ++AV      + L K G  ++A ++F ++K  G  
Sbjct: 205 KAYCLSGLLEKAEAVFVEMKNYGLPSSAVVYNSYINGLMKGGNPNKAEEIFLRMKRDGCK 264

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
           P    +T +I  Y   G+   AL+VF  ML+    PN  TY  L+   A        +  
Sbjct: 265 PSTETYTMLINLYGKDGKSFMALKVFNEMLSHKCKPNICTYTALVNAFAREG-----LCE 319

Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
            A++   +M   G+ P+  +Y A+ EA+ RA     A  +   M+  G  PD +A    L
Sbjct: 320 KAEEVFEQMQEAGLEPDVYSYNALMEAYSRAGFPYGAAEIFSLMQHMGCEPD-RASYNIL 378

Query: 240 IDKRGQ-GF 247
           +D  G+ GF
Sbjct: 379 VDAYGRAGF 387



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 88/170 (51%), Gaps = 12/170 (7%)

Query: 70  DPRNLQEIFHKMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           +P   +EIF +M+ +G    T     + +   KDG +  AL++F ++      P++  +T
Sbjct: 247 NPNKAEEIFLRMKRDGCKPSTETYTMLINLYGKDGKSFMALKVFNEMLSHKCKPNICTYT 306

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA--DGNAKILGDAQKY 184
           A++ A+A  G  ++A  VF +M  +G+ P+ Y+Y  L++  + A    G A+I       
Sbjct: 307 ALVNAFAREGLCEKAEEVFEQMQEAGLEPDVYSYNALMEAYSRAGFPYGAAEIFS----- 361

Query: 185 LMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
           LM+ +  G  P+  +Y  + +A+ RA  +++A  + + MK  G  P  K+
Sbjct: 362 LMQHM--GCEPDRASYNILVDAYGRAGFLNDAEAVFEDMKRVGITPTMKS 409



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 75/153 (49%), Gaps = 7/153 (4%)

Query: 79  HKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQG 138
           HK +    T  A  + +A +++GL  +A ++F Q+++ G  PDV ++ A++EAY+ AG  
Sbjct: 296 HKCKPNICTYTA--LVNAFAREGLCEKAEEVFEQMQEAGLEPDVYSYNALMEAYSRAGFP 353

Query: 139 KEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAG 198
             A  +F  M   G  P+  +Y +L+      A G A  L DA+    +M   G+ P   
Sbjct: 354 YGAAEIFSLMQHMGCEPDRASYNILVD-----AYGRAGFLNDAEAVFEDMKRVGITPTMK 408

Query: 199 TYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           ++  +  AF +   V +   +L QM   G   D
Sbjct: 409 SHMVLLSAFSKTGNVSKCEDILNQMCKSGLKLD 441


>gi|356561685|ref|XP_003549110.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 477

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 8/156 (5%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M+ + +  N V    + D L K+     A+ L  ++K++G  PDV ++T +++A  
Sbjct: 325 LFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALC 384

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G+ + A + F  +L  G   N  TY V+I GL  A      + GD      +M GKG 
Sbjct: 385 KGGRLENAKQFFQHLLVKGYHLNVRTYNVMINGLCKAG-----LFGDVMDLKSKMEGKGC 439

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFV 229
            P+A T+  +  A     + D+A   L++M A+G +
Sbjct: 440 MPDAITFKTIICALFEKDENDKAEKFLREMIARGLL 475



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 75/153 (49%), Gaps = 8/153 (5%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DAL K+G   EA+ LF ++K K   P++V +T++I+        + A+ +  +M   G
Sbjct: 309 LIDALGKEGKIDEAISLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQG 368

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+ Y+Y +L+  L          L +A+++   ++ KG   N  TY  +     +A  
Sbjct: 369 IQPDVYSYTILLDALCKGGR-----LENAKQFFQHLLVKGYHLNVRTYNVMINGLCKAGL 423

Query: 213 VDEARGLLQQMKAKGFVPDE---KAVKEALIDK 242
             +   L  +M+ KG +PD    K +  AL +K
Sbjct: 424 FGDVMDLKSKMEGKGCMPDAITFKTIICALFEK 456



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 68/139 (48%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K G T    +L  +++     PDVV +T +I       +  +A  ++  M+  G
Sbjct: 204 LINGLCKAGETKAVARLLRKLEGHSVKPDVVMYTTIIHCLCKNKRVGDACDLYSEMIVKG 263

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           ++PN +TY  LI G      GN K   +A   L EM  K + P+  T+  + +A  +  K
Sbjct: 264 ISPNVFTYNTLIYGFCIM--GNLK---EAFSLLNEMKLKNINPDVYTFNILIDALGKEGK 318

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +DEA  L ++MK K   P+
Sbjct: 319 IDEAISLFEEMKHKNMFPN 337



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 86/227 (37%), Gaps = 36/227 (15%)

Query: 54  PPPYDPFKKVVDEEPTDPRNLQEI--FHKMRTEGLTNNAVKM---FDALSKDGLTHEALQ 108
           PPP   F  ++     +   L  I  F + ++ G+T N   +    +          A  
Sbjct: 90  PPPTFHFDNILSSLVKNKHYLTVISLFKQFQSNGVTPNLCTLNILINCFCHLAHITFAFS 149

Query: 109 LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
           +FA I  +G+ PD +    +I+     G+ K AL    +++A G   +  +Y  LI GL 
Sbjct: 150 VFANILKRGYHPDAITLNTLIKGLCFCGEIKRALYFHDKVVAQGFQLDQVSYGTLINGLC 209

Query: 169 AAADGNA------------------------------KILGDAQKYLMEMVGKGMRPNAG 198
            A +  A                              K +GDA     EM+ KG+ PN  
Sbjct: 210 KAGETKAVARLLRKLEGHSVKPDVVMYTTIIHCLCKNKRVGDACDLYSEMIVKGISPNVF 269

Query: 199 TYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
           TY  +   F     + EA  LL +MK K   PD       LID  G+
Sbjct: 270 TYNTLIYGFCIMGNLKEAFSLLNEMKLKNINPDVYTF-NILIDALGK 315



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 70/156 (44%), Gaps = 8/156 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +++ +M  +G++ N      +       G   EA  L  ++K K   PDV     +I+A 
Sbjct: 254 DLYSEMIVKGISPNVFTYNTLIYGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDAL 313

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+  EA+ +F  M    + PN  TY  LI GL          L  A     +M  +G
Sbjct: 314 GKEGKIDEAISLFEEMKHKNMFPNIVTYTSLIDGLCKNHH-----LERAIALCKKMKEQG 368

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
           ++P+  +YT + +A  +  +++ A+   Q +  KG+
Sbjct: 369 IQPDVYSYTILLDALCKGGRLENAKQFFQHLLVKGY 404


>gi|356529499|ref|XP_003533328.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 447

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 78/157 (49%), Gaps = 8/157 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++  +MR  G   + +    + D L K+G    A+ LF ++KD+G  P++   T +++  
Sbjct: 296 DLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNMFTFTILLDGL 355

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+ K+A  VF  +L  G   N YTY V+I G          +L +A   L +M   G
Sbjct: 356 WKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQG-----LLEEALTMLSKMEDNG 410

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFV 229
             PNA T+  +  A  +  + D+A  LL+QM A+G +
Sbjct: 411 CIPNAFTFETIIIALFKKDENDKAEKLLRQMIARGLL 447



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 75/155 (48%), Gaps = 12/155 (7%)

Query: 93  MFDALSKDGLTHEA-------LQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVF 145
           + DAL K+G   EA         L  +++D+G   DV+ ++++I+     G    A+ +F
Sbjct: 274 LVDALCKEGKVKEAKRRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALF 333

Query: 146 MRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFE 205
            +M   G+ PN +T+ +L+ GL          L DAQ+   +++ KG   N  TY  +  
Sbjct: 334 NKMKDQGIRPNMFTFTILLDGLWKGGR-----LKDAQEVFQDLLTKGYHLNVYTYNVMIN 388

Query: 206 AFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
              +   ++EA  +L +M+  G +P+    +  +I
Sbjct: 389 GHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIII 423



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 6/143 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DAL K  L  EA  LF+++  KG   DVV +  +I  +   G+ KEA+ +   M+   
Sbjct: 204 IIDALCKYQLVSEAYGLFSEMTVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNVMVLKT 263

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM----EMVGKGMRPNAGTYTAVFEAFV 208
           + P+ YTY +L+  L    +G  K       Y+     EM  +G   +  TY+++ +   
Sbjct: 264 INPDVYTYTILVDAL--CKEGKVKEAKRRISYVWDLIDEMRDRGQPADVITYSSLIDGLC 321

Query: 209 RAQKVDEARGLLQQMKAKGFVPD 231
           +   +D A  L  +MK +G  P+
Sbjct: 322 KNGHLDRAIALFNKMKDQGIRPN 344



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 17/175 (9%)

Query: 78  FH-KMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           FH K+  +G   N V    + + + K G T  A++L  +I  +   PDVV ++ +I+A  
Sbjct: 150 FHDKLLAQGFQLNQVGYGTLINGVCKIGDTRAAIKLLKKIDGRLTKPDVVMYSTIIDALC 209

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
                 EA  +F  M   G++ +  TY  LI G           L +A   L  MV K +
Sbjct: 210 KYQLVSEAYGLFSEMTVKGISADVVTYNTLIYGFCIVGK-----LKEAIGLLNVMVLKTI 264

Query: 194 RPNAGTYTAVFEAFVRAQKVDEAR-------GLLQQMKAKGFVPDEKAVKEALID 241
            P+  TYT + +A  +  KV EA+        L+ +M+ +G  P +     +LID
Sbjct: 265 NPDVYTYTILVDALCKEGKVKEAKRRISYVWDLIDEMRDRG-QPADVITYSSLID 318


>gi|302771513|ref|XP_002969175.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
 gi|300163680|gb|EFJ30291.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
          Length = 399

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 69/137 (50%), Gaps = 9/137 (6%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
           AL K G   EA+++   +KD    PDVV    +I     AG+  EA +V   M  SG A 
Sbjct: 63  ALCKSGKVPEAMEVVKNMKDGACKPDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAA 122

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           N  TY  LI GL++A        G + + ++ M G    P+  TY A+   F ++ ++D 
Sbjct: 123 NLVTYNTLINGLSSA--------GRSGEAVLVMQGMTTTPDTQTYNAIIHGFCKSGEIDR 174

Query: 216 ARGLLQQMKAK-GFVPD 231
           A G L++MK + G  PD
Sbjct: 175 AYGFLEEMKQRAGCSPD 191



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 68/135 (50%), Gaps = 5/135 (3%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A +L + + + G  PDVV ++ +I+     G   +   +  +M++ G  P+  TY VL+ 
Sbjct: 247 ARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVT 306

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           GL  A       + +A + +  M+  G  PNA TY+ VF+   +  K+D A  LL  ++ 
Sbjct: 307 GLCKAGK-----MVEACRLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRD 361

Query: 226 KGFVPDEKAVKEALI 240
           KG V D  A +  L+
Sbjct: 362 KGRVTDVVAFETLLL 376



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 79/192 (41%), Gaps = 38/192 (19%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           Q++  +M   G   N V    + + LS  G + EA+ +   +      PD   + A+I  
Sbjct: 109 QQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGMTTT---PDTQTYNAIIHG 165

Query: 132 YASAGQGKEALRVFMRMLA-SGVAPNAYTYAVLIKGLAAAA------------------- 171
           +  +G+   A      M   +G +P+ +TY++LI GL  ++                   
Sbjct: 166 FCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEMIGRKDCC 225

Query: 172 ----------DGNAKI--LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGL 219
                     DG  K   L  A++ L  M+  G  P+  TY+ + +   R   VD+   L
Sbjct: 226 ASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFAL 285

Query: 220 LQQMKAKGFVPD 231
           L++M ++G  PD
Sbjct: 286 LEKMVSRGCKPD 297



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 5/114 (4%)

Query: 60  FKKVVD--EEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIK 114
           F  +VD   +  D    +E+   M   G   + V    + D L + G   +   L  ++ 
Sbjct: 231 FNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMV 290

Query: 115 DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
            +G  PDVV +T ++     AG+  EA R+  RML  G  PNA TY+++  GL 
Sbjct: 291 SRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSLVFDGLC 344


>gi|255577248|ref|XP_002529506.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531022|gb|EEF32875.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 808

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 83/170 (48%), Gaps = 8/170 (4%)

Query: 73  NLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           N + +F  M  EGLT   V    +  A +  G++ EAL +F +IK  G +PDVV++T+++
Sbjct: 338 NCKAVFSTMLAEGLTPTIVSYNALIGAYAFHGMSEEALSVFKKIKASGLLPDVVSYTSLL 397

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
            +Y  + Q K+A  +F  M  + + PN  ++  LI      A G+  +L DA K L EM 
Sbjct: 398 SSYGRSKQPKKAREMFNMMKKAKLKPNVVSFNALID-----AYGSNGLLADAVKVLREME 452

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
             G+ PN  T   +  A  R  +      +L   K +G   +  A   A+
Sbjct: 453 QDGIHPNIVTICTLLAACGRCGQKVNIDAVLSAAKMRGIKLNTVACNSAI 502



 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 82/166 (49%), Gaps = 10/166 (6%)

Query: 81  MRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDK--GHMPDVVAHTAVIEAYASAGQG 138
           +R +  T N V     L K G   +A+ +F  +++K     PD+V  T++I  Y+ +GQ 
Sbjct: 279 IRPDTTTRNIV--IYCLVKLGQCEKAIDIFNSMREKRAECRPDIVTFTSIIHLYSLSGQV 336

Query: 139 KEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAG 198
           +    VF  MLA G+ P   +Y  LI   A A  G ++   +A     ++   G+ P+  
Sbjct: 337 ENCKAVFSTMLAEGLTPTIVSYNALIG--AYAFHGMSE---EALSVFKKIKASGLLPDVV 391

Query: 199 TYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRG 244
           +YT++  ++ R+++  +AR +   MK     P+  +   ALID  G
Sbjct: 392 SYTSLLSSYGRSKQPKKAREMFNMMKKAKLKPNVVSF-NALIDAYG 436



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 86/187 (45%), Gaps = 10/187 (5%)

Query: 50  KSKLPPPYDPFKKVVDEEPTDP--RNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEAL 107
           K+KL P    F  ++D   ++    +  ++  +M  +G+  N V +   L+  G   + +
Sbjct: 418 KAKLKPNVVSFNALIDAYGSNGLLADAVKVLREMEQDGIHPNIVTICTLLAACGRCGQKV 477

Query: 108 QLFAQI---KDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
            + A +   K +G   + VA  + I +Y + G+ ++A+ ++  M    VAPN+ TY VLI
Sbjct: 478 NIDAVLSAAKMRGIKLNTVACNSAIGSYMNVGEYEKAVALYNSMRKMKVAPNSVTYTVLI 537

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            G    +       G A ++  +M+   +       ++V  A+ +  ++ EA  +   MK
Sbjct: 538 SGCCKMSK-----YGKAIEFFADMMELKIALTKEVCSSVICAYSKQGQITEAESIFTMMK 592

Query: 225 AKGFVPD 231
             G  PD
Sbjct: 593 MAGCCPD 599



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 74/162 (45%), Gaps = 21/162 (12%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           D      I H     G   N   +F  +  +GLT                P +V++ A+I
Sbjct: 319 DIVTFTSIIHLYSLSGQVENCKAVFSTMLAEGLT----------------PTIVSYNALI 362

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
            AYA  G  +EAL VF ++ ASG+ P+  +Y  L+     ++ G +K    A++    M 
Sbjct: 363 GAYAFHGMSEEALSVFKKIKASGLLPDVVSYTSLL-----SSYGRSKQPKKAREMFNMMK 417

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              ++PN  ++ A+ +A+     + +A  +L++M+  G  P+
Sbjct: 418 KAKLKPNVVSFNALIDAYGSNGLLADAVKVLREMEQDGIHPN 459



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 64/143 (44%), Gaps = 13/143 (9%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +A    G   EAL++  Q+ + G  PD+V H  V+ AY +  Q  +AL  F  M  + 
Sbjct: 219 LINACGSSGNWREALKVSKQMTENGVGPDLVTHNIVLSAYKTGAQYSKALSYFELMKGTN 278

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL-----MEMVGKGMRPNAGTYTAVFEAF 207
           + P+  T  ++I  L          LG  +K +     M       RP+  T+T++   +
Sbjct: 279 IRPDTTTRNIVIYCLVK--------LGQCEKAIDIFNSMREKRAECRPDIVTFTSIIHLY 330

Query: 208 VRAQKVDEARGLLQQMKAKGFVP 230
             + +V+  + +   M A+G  P
Sbjct: 331 SLSGQVENCKAVFSTMLAEGLTP 353



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 90/214 (42%), Gaps = 27/214 (12%)

Query: 40  DQPTKKYVNTKSKLPPPYDPFKKVVDE------EPTDPRNLQEI------------FHKM 81
           D    + V+   +L P YD  + V++           PR ++EI            F  M
Sbjct: 74  DWTLSQVVSKILELNPKYDDVEVVLNHWIGRFARKNFPRLIKEITQRGALEHSNLVFRWM 133

Query: 82  RTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ 137
           + +        M++ +    ++  LT +A  LF ++++    PD   + A+I A+  AGQ
Sbjct: 134 KLQKNYCARTDMYNMMIRLHARHNLTDQARGLFFEMQEWRCKPDSETYNALINAHGRAGQ 193

Query: 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA 197
            + A+ +   ML   + P+  TY  LI   A  + GN +   +A K   +M   G+ P+ 
Sbjct: 194 WRWAMNIMEDMLREAIPPSRSTYNNLIN--ACGSSGNWR---EALKVSKQMTENGVGPDL 248

Query: 198 GTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            T+  V  A+    +  +A    + MK     PD
Sbjct: 249 VTHNIVLSAYKTGAQYSKALSYFELMKGTNIRPD 282



 Score = 44.7 bits (104), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 30/134 (22%), Positives = 57/134 (42%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +A  + G    A+ +   +  +   P    +  +I A  S+G  +EAL+V  +M  +G
Sbjct: 184 LINAHGRAGQWRWAMNIMEDMLREAIPPSRSTYNNLINACGSSGNWREALKVSKQMTENG 243

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V P+  T+ +++      A         A  Y   M G  +RP+  T   V    V+  +
Sbjct: 244 VGPDLVTHNIVLSAYKTGAQ-----YSKALSYFELMKGTNIRPDTTTRNIVIYCLVKLGQ 298

Query: 213 VDEARGLLQQMKAK 226
            ++A  +   M+ K
Sbjct: 299 CEKAIDIFNSMREK 312


>gi|260780546|gb|ACX50819.1| AT1G03560-like protein [Capsella bursa-pastoris]
          Length = 182

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 76/146 (52%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+G  +E   +F  +  KG  P+V  +T +I+ YA +G  ++A+R+  RM+  G  P
Sbjct: 15  GLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGNVEDAIRLLHRMIDEGFKP 74

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  T++V++ GL      N ++  +A  Y       G+  N+  Y+++ +   +A ++DE
Sbjct: 75  DVVTFSVVVNGLCK----NGRV-EEALDYFQTCQFNGLAINSMFYSSLIDGLGKAGRIDE 129

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      ALID
Sbjct: 130 AERLFEEMSEKGCTRDSYCYN-ALID 154



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 72/134 (53%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ D+G  PDVV  + V+      G+ +EAL  F     +G
Sbjct: 47  LIDGYAKSGNVEDAIRLLHRMIDEGFKPDVVTFSVVVNGLCKNGRVEEALDYFQTCQFNG 106

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +A N+  Y+ LI GL     G A  + +A++   EM  KG   ++  Y A+ +AF +  K
Sbjct: 107 LAINSMFYSSLIDGL-----GKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHGK 161

Query: 213 VDEARGLLQQMKAK 226
           VDEA  L ++M+ +
Sbjct: 162 VDEAMTLFKRMEEE 175



 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 6/125 (4%)

Query: 124 AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQK 183
           A + VI      G+  E   VF  M+  G  PN   Y VLI G A +  GN +   DA +
Sbjct: 8   AFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKS--GNVE---DAIR 62

Query: 184 YLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKR 243
            L  M+ +G +P+  T++ V     +  +V+EA    Q  +  G   +      +LID  
Sbjct: 63  LLHRMIDEGFKPDVVTFSVVVNGLCKNGRVEEALDYFQTCQFNGLAIN-SMFYSSLIDGL 121

Query: 244 GQGFR 248
           G+  R
Sbjct: 122 GKAGR 126


>gi|225430498|ref|XP_002283327.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic [Vitis vinifera]
 gi|296082142|emb|CBI21147.3| unnamed protein product [Vitis vinifera]
          Length = 1113

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 49/165 (29%), Positives = 79/165 (47%), Gaps = 8/165 (4%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D   +  +  +M + GL  N          L + G   EA  +  ++ D G  PDVV +T
Sbjct: 242 DIETVMGLLQEMESLGLRPNIYTFTICIRILGRAGKIDEAYGILKRMDDAGCGPDVVTYT 301

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
            +I+A  +AG+   A  +F++M AS   P+  TY  L+   +   D +A      +++  
Sbjct: 302 VLIDALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFSDHGDLDA-----IKEFWS 356

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           EM   G  P+  T+T + +A  +  KVDEA G L  MK +G  P+
Sbjct: 357 EMEADGYLPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPN 401



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 48/158 (30%), Positives = 79/158 (50%), Gaps = 8/158 (5%)

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F+ M + GL   A   +   D   K G + +A++ F ++K  G +P++VA  A + + 
Sbjct: 423 ELFNSMESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMKTNGIVPNIVACNASLYSL 482

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           A  G+ +EA   F  +   G+AP+A TY +L++       G A  + DA K L EM   G
Sbjct: 483 AEQGRLEEAKEFFNGLKKCGLAPDAITYNILMR-----CYGKAGRVDDAIKLLSEMEENG 537

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
             P      ++ +   +A +VDEA  + Q+MK     P
Sbjct: 538 CDPEVVIINSLIDTLYKADRVDEAWKMFQRMKEMKLAP 575



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 5/139 (3%)

Query: 93   MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
            + D L K G   EA Q F ++ D G MP+   +  ++  +   G  + A  +F RM+  G
Sbjct: 899  LIDGLLKLGRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETACELFRRMVKEG 958

Query: 153  VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            + P+  +Y++++  L          + DA  Y  E+   G+ P+   Y  +     R+Q+
Sbjct: 959  IRPDLKSYSIMVDCLCMVGK-----VDDALHYFEELKLSGLDPDLVCYNLMINGLGRSQR 1013

Query: 213  VDEARGLLQQMKAKGFVPD 231
            V+EA  L  +M+ +G  PD
Sbjct: 1014 VEEALSLFDEMRNRGITPD 1032



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 75/159 (47%), Gaps = 8/159 (5%)

Query: 76   EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
            E+F +M  EG+  +      M D L   G   +AL  F ++K  G  PD+V +  +I   
Sbjct: 949  ELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHYFEELKLSGLDPDLVCYNLMINGL 1008

Query: 133  ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              + + +EAL +F  M   G+ P+ YTY  LI  L     G A ++ +A K   E+  KG
Sbjct: 1009 GRSQRVEEALSLFDEMRNRGITPDLYTYNALILNL-----GIAGMVEEAGKMYEELQLKG 1063

Query: 193  MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            + PN  TY A+      +   D A  + ++M   G  P+
Sbjct: 1064 LEPNVFTYNALIRGHSMSGNPDRAYAVYKKMMVGGCRPN 1102



 Score = 70.1 bits (170), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 43/144 (29%), Positives = 71/144 (49%), Gaps = 5/144 (3%)

Query: 88  NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMR 147
           N  + +F  L   G   EA     +++  G + +  ++  +I     +G  +EAL+V+ R
Sbjct: 158 NTYLTIFKVLYIRGGLREAPVALEKMRKVGFVLNGYSYIGLIHLLLKSGFCREALKVYRR 217

Query: 148 MLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAF 207
           M++ G+ P+  TY+ L+  L     G  + +      L EM   G+RPN  T+T      
Sbjct: 218 MVSEGIKPSLKTYSALMVAL-----GKRRDIETVMGLLQEMESLGLRPNIYTFTICIRIL 272

Query: 208 VRAQKVDEARGLLQQMKAKGFVPD 231
            RA K+DEA G+L++M   G  PD
Sbjct: 273 GRAGKIDEAYGILKRMDDAGCGPD 296



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/161 (26%), Positives = 74/161 (45%), Gaps = 8/161 (4%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F+KM+  G T +        DAL K G   E   L+ ++  +G  P+ + H  VI    
Sbjct: 810 LFYKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDLYEEMLFRGCKPNTITHNIVIFGLV 869

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            +    +A+ ++  +++   +P  +TY  LI GL          L +A+++  EM+  G 
Sbjct: 870 KSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKLGR-----LEEAKQFFEEMLDYGC 924

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
            PN   Y  +   F +   V+ A  L ++M  +G  PD K+
Sbjct: 925 MPNCPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDLKS 965



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 49/177 (27%), Positives = 79/177 (44%), Gaps = 8/177 (4%)

Query: 73  NLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           N +E+F KM+      + V    + D  S  G      + +++++  G++PDVV  T +I
Sbjct: 315 NAKELFLKMKASSHKPDRVTYITLLDKFSDHGDLDAIKEFWSEMEADGYLPDVVTFTILI 374

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
           +A    G+  EA      M   GVAPN +TY  LI GL          L +A +    M 
Sbjct: 375 DALCKVGKVDEAFGTLDVMKKQGVAPNLHTYNTLICGLL-----RLNRLDEALELFNSME 429

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
             G+   A TY    + + ++ +  +A    ++MK  G VP+  A   +L     QG
Sbjct: 430 SLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMKTNGIVPNIVACNASLYSLAEQG 486



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/168 (27%), Positives = 78/168 (46%), Gaps = 9/168 (5%)

Query: 78  FHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
             KMR  G   N    + +   L K G   EAL+++ ++  +G  P +  ++A++ A   
Sbjct: 180 LEKMRKVGFVLNGYSYIGLIHLLLKSGFCREALKVYRRMVSEGIKPSLKTYSALMVALGK 239

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
               +  + +   M + G+ PN YT+ + I+ L     G A  + +A   L  M   G  
Sbjct: 240 RRDIETVMGLLQEMESLGLRPNIYTFTICIRIL-----GRAGKIDEAYGILKRMDDAGCG 294

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDK 242
           P+  TYT + +A   A K++ A+ L  +MKA    PD +     L+DK
Sbjct: 295 PDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPD-RVTYITLLDK 341



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/126 (28%), Positives = 65/126 (51%), Gaps = 8/126 (6%)

Query: 78   FHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
            F +++  GL  + V    M + L +     EAL LF +++++G  PD+  + A+I     
Sbjct: 986  FEELKLSGLDPDLVCYNLMINGLGRSQRVEEALSLFDEMRNRGITPDLYTYNALILNLGI 1045

Query: 135  AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            AG  +EA +++  +   G+ PN +TY  LI+G + + + +      A     +M+  G R
Sbjct: 1046 AGMVEEAGKMYEELQLKGLEPNVFTYNALIRGHSMSGNPDR-----AYAVYKKMMVGGCR 1100

Query: 195  PNAGTY 200
            PN GT+
Sbjct: 1101 PNTGTF 1106



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/160 (24%), Positives = 74/160 (46%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E F+ ++  GL  +A+    +     K G   +A++L +++++ G  P+VV   ++I+ 
Sbjct: 492 KEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVIINSLIDT 551

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              A +  EA ++F RM    +AP   TY  L+ GL     G    + +A      M+  
Sbjct: 552 LYKADRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGL-----GKEGRVQEATALFKGMIAD 606

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              PN  ++  + +   +  +VD A  +L +M      PD
Sbjct: 607 DCPPNTISFNTLLDCLCKNGEVDLALKMLFRMTEMNCFPD 646



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/137 (27%), Positives = 67/137 (48%), Gaps = 6/137 (4%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EAL+LF  ++  G       +   I+ Y  +G+  +A++ F +M  +G+ PN       +
Sbjct: 420 EALELFNSMESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMKTNGIVPNIVACNASL 479

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
             LA         L +A+++   +   G+ P+A TY  +   + +A +VD+A  LL +M+
Sbjct: 480 YSLAEQGR-----LEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEME 534

Query: 225 AKGFVPDEKAVKEALID 241
             G  P E  +  +LID
Sbjct: 535 ENGCDP-EVVIINSLID 550



 Score = 48.5 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 51/91 (56%), Gaps = 5/91 (5%)

Query: 77   IFHKMRTEGLTNNAVKMFDALSKD----GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
            +F +MR  G+T + +  ++AL  +    G+  EA +++ +++ KG  P+V  + A+I  +
Sbjct: 1020 LFDEMRNRGITPD-LYTYNALILNLGIAGMVEEAGKMYEELQLKGLEPNVFTYNALIRGH 1078

Query: 133  ASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
            + +G    A  V+ +M+  G  PN  T+A L
Sbjct: 1079 SMSGNPDRAYAVYKKMMVGGCRPNTGTFAQL 1109


>gi|260780468|gb|ACX50780.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780484|gb|ACX50788.1| AT1G03560-like protein [Capsella bursa-pastoris]
          Length = 199

 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 76/146 (52%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+G  +E   +F  +  KG  P+V  +T +I+ YA +G  ++A+R+  RM+  G  P
Sbjct: 26  GLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGNVEDAIRLLHRMIDEGFKP 85

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  T++V++ GL      N ++  +A  Y       G+  N+  Y+++ +   +A ++DE
Sbjct: 86  DVVTFSVVVNGLCK----NGRV-EEALDYFQTCQFNGLAINSMFYSSLIDGLGKAGRIDE 140

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      ALID
Sbjct: 141 AERLFEEMSEKGCTRDSYCYN-ALID 165



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 72/134 (53%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ D+G  PDVV  + V+      G+ +EAL  F     +G
Sbjct: 58  LIDGYAKSGNVEDAIRLLHRMIDEGFKPDVVTFSVVVNGLCKNGRVEEALDYFQTCQFNG 117

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +A N+  Y+ LI GL     G A  + +A++   EM  KG   ++  Y A+ +AF +  K
Sbjct: 118 LAINSMFYSSLIDGL-----GKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHGK 172

Query: 213 VDEARGLLQQMKAK 226
           VDEA  L ++M+ +
Sbjct: 173 VDEAMTLFKRMEEE 186



 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 6/125 (4%)

Query: 124 AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQK 183
           A + VI      G+  E   VF  M+  G  PN   Y VLI G A +  GN +   DA +
Sbjct: 19  AFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKS--GNVE---DAIR 73

Query: 184 YLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKR 243
            L  M+ +G +P+  T++ V     +  +V+EA    Q  +  G   +      +LID  
Sbjct: 74  LLHRMIDEGFKPDVVTFSVVVNGLCKNGRVEEALDYFQTCQFNGLAIN-SMFYSSLIDGL 132

Query: 244 GQGFR 248
           G+  R
Sbjct: 133 GKAGR 137


>gi|224084127|ref|XP_002307219.1| predicted protein [Populus trichocarpa]
 gi|222856668|gb|EEE94215.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 66/136 (48%), Gaps = 5/136 (3%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
              ++G   EA +++ Q+ ++G +P  + +  +I  +   G  +EAL +   M+  G  P
Sbjct: 439 GFCEEGAIQEAKRVYDQMNNEGGIPSALVYDCLIHGFCQEGCVREALELMNEMVFLGYFP 498

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
            A T+  LI G            G A K L +MVG+G  P+ G+Y+ + +A  R +   +
Sbjct: 499 VASTFNALISGFCRLGKD-----GSALKLLEDMVGRGCVPDTGSYSPLIDALCRKKSFQK 553

Query: 216 ARGLLQQMKAKGFVPD 231
           A  LL QM   G  PD
Sbjct: 554 AASLLLQMVENGITPD 569



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 56/123 (45%), Gaps = 5/123 (4%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +AL L  +    G +PDVV  T V+E   + G+  EA+ +  R+ + G   +   +  LI
Sbjct: 238 QALVLLEKSFSLGFVPDVVTVTKVVEILCNVGRVTEAVEILERVESKGGVVDVVAHNTLI 297

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           KG      G  K+       L EM  KG  PNA TY A+   F  +  ++ A  +   MK
Sbjct: 298 KGFCKF--GKVKL---GHGLLKEMERKGCLPNADTYNALISGFCESGMLESALDMFNDMK 352

Query: 225 AKG 227
             G
Sbjct: 353 TDG 355



 Score = 53.5 bits (127), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 5/133 (3%)

Query: 92  KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
           K+ + L   G   EA+++  +++ KG + DVVAH  +I+ +   G+ K    +   M   
Sbjct: 260 KVVEILCNVGRVTEAVEILERVESKGGVVDVVAHNTLIKGFCKFGKVKLGHGLLKEMERK 319

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           G  PNA TY  LI G   +      +L  A     +M   G+  N  T+  + +      
Sbjct: 320 GCLPNADTYNALISGFCESG-----MLESALDMFNDMKTDGINCNFVTFDTLIKGLFSRG 374

Query: 212 KVDEARGLLQQMK 224
           + ++   +L+ M+
Sbjct: 375 RTEDGFKILELME 387



 Score = 48.1 bits (113), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 5/78 (6%)

Query: 147 RMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEA 206
           +M+ +G+  + YTY +L+KGL          +G+  K L  +  +G++PN   Y  +  A
Sbjct: 144 KMMGAGIQGDDYTYGILMKGLCLTNR-----IGEGFKLLQVIKSRGLKPNVVIYNTLLHA 198

Query: 207 FVRAQKVDEARGLLQQMK 224
                KV  AR L+ ++K
Sbjct: 199 LCNNGKVGRARSLMNEIK 216



 Score = 43.9 bits (102), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 36/159 (22%), Positives = 69/159 (43%), Gaps = 12/159 (7%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++   +++ GL  N V    +  AL  +G    A  L  +IK+    P+ V    +I  Y
Sbjct: 175 KLLQVIKSRGLKPNVVIYNTLLHALCNNGKVGRARSLMNEIKE----PNDVTFNVLICGY 230

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
                  +AL +  +  + G  P+  T   +++ L      N   + +A + L  +  KG
Sbjct: 231 CKEDNFVQALVLLEKSFSLGFVPDVVTVTKVVEILC-----NVGRVTEAVEILERVESKG 285

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              +   +  + + F +  KV    GLL++M+ KG +P+
Sbjct: 286 GVVDVVAHNTLIKGFCKFGKVKLGHGLLKEMERKGCLPN 324


>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Vitis vinifera]
          Length = 746

 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 84/175 (48%), Gaps = 9/175 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + IF +M ++G+  + V    +   LSK+G   +AL+ F  +K+ G  PD V +T +I  
Sbjct: 379 ERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGG 438

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +   G   EAL+V   ML  G   +  TY  ++ GL        K+L +A +   EM  +
Sbjct: 439 FCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCK-----EKMLSEADELFTEMTER 493

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
           G+ P+  T+T +   + +   +++A  L + M  +   PD       LID   +G
Sbjct: 494 GVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPD-VVTYNTLIDGFCKG 547



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 73/159 (45%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           EI+ ++   G+  N      M +AL K+          + +++KG  PDVV +  +I AY
Sbjct: 240 EIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAY 299

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G  +EA  +   M   G+ P  +TY  +I GL        K L  A+  L EM+  G
Sbjct: 300 CRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKT----GKYL-RAKGVLDEMLKIG 354

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           M P+  TY  +     R   + +A  +  +M ++G VPD
Sbjct: 355 MSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPD 393



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/217 (20%), Positives = 90/217 (41%), Gaps = 35/217 (16%)

Query: 52  KLPPPYDPFKKVVD--EEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEA 106
            L P    +  ++D   + ++   + E+++ M +  +  N +    + +     G   EA
Sbjct: 529 NLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEA 588

Query: 107 LQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKG 166
            +L+ ++ +KG    ++    +++ Y  AG   +A      ML  G+ P+  TY  LI G
Sbjct: 589 FRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLING 648

Query: 167 LAAAAD-----------GNAKILGDAQKY-------------------LMEMVGKGMRPN 196
                +            N+ +L D   Y                   +++M+ +G+ P+
Sbjct: 649 FIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPD 708

Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK 233
             TYT++    V    + EA  +  +M  +GFVPD+K
Sbjct: 709 RSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPDDK 745



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 63/136 (46%), Gaps = 5/136 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K+ +  EA +LF ++ ++G  PD    T +I  Y+  G   +A+ +F  M+   
Sbjct: 470 ILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRN 529

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+  TY  LI G    ++     +    +   +M+ + + PN  +Y  +   +     
Sbjct: 530 LKPDVVTYNTLIDGFCKGSE-----MEKVNELWNDMISRRIYPNHISYGILINGYCNMGC 584

Query: 213 VDEARGLLQQMKAKGF 228
           V EA  L  +M  KGF
Sbjct: 585 VSEAFRLWDEMVEKGF 600



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/189 (22%), Positives = 82/189 (43%), Gaps = 33/189 (17%)

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F +M   G+  +      + +  SKDG  ++A+ LF  +  +   PDVV +  +I+ +
Sbjct: 485 ELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGF 544

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL----------------------AAA 170
               + ++   ++  M++  + PN  +Y +LI G                       A  
Sbjct: 545 CKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATI 604

Query: 171 ADGNAKILG--------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
              N  + G         A ++L  M+ KG+ P+  TY  +   F++ + +D A  L+ +
Sbjct: 605 ITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNK 664

Query: 223 MKAKGFVPD 231
           M+  G +PD
Sbjct: 665 MENSGLLPD 673



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 64/127 (50%), Gaps = 5/127 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +A ++F ++  +G +PD+V+ +A+I   +  G   +AL+ F  M  +G+AP+   Y +LI
Sbjct: 377 DAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILI 436

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            G          ++ +A K   EM+ +G   +  TY  +     + + + EA  L  +M 
Sbjct: 437 GGFCRNG-----VMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMT 491

Query: 225 AKGFVPD 231
            +G  PD
Sbjct: 492 ERGVFPD 498



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 5/127 (3%)

Query: 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
            E  + F  +K KG    + A  +++      G    A  ++  ++ SGV  N YT  ++
Sbjct: 201 REGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIM 260

Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           I  L      N KI  + + +L +M  KG+ P+  TY  +  A+ R   ++EA  L+  M
Sbjct: 261 INALCK----NQKI-ENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSM 315

Query: 224 KAKGFVP 230
             KG  P
Sbjct: 316 SGKGLKP 322



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 71/170 (41%), Gaps = 10/170 (5%)

Query: 76  EIFHKMRTEGLT---NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E F  ++++GL    N    +   L K G    A +++ ++   G   +V     +I A 
Sbjct: 205 EAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINAL 264

Query: 133 ASAGQGKEALRVFMR-MLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               Q  E  + F+  M   GV P+  TY  LI            +L +A + +  M GK
Sbjct: 265 CK-NQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQG-----LLEEAFELMDSMSGK 318

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           G++P   TY A+     +  K   A+G+L +M   G  PD       L++
Sbjct: 319 GLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVE 368



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 67/161 (41%), Gaps = 12/161 (7%)

Query: 76  EIFHKMRTEGL-----TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           E+   M  +GL     T NA+   + L K G    A  +  ++   G  PD   +  ++ 
Sbjct: 310 ELMDSMSGKGLKPCVFTYNAI--INGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLV 367

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
                    +A R+F  M + GV P+  +++ LI  L+         L  A KY  +M  
Sbjct: 368 ECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNG-----CLDQALKYFRDMKN 422

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            G+ P+   YT +   F R   + EA  +  +M  +G V D
Sbjct: 423 AGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLD 463


>gi|341605743|gb|AEK82974.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605753|gb|AEK82979.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
 gi|341605831|gb|AEK83018.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
          Length = 208

 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 75/146 (51%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+G  +E   +F  +  KG  P+V  +T +I+ YA +G  ++A+R+  RM+  G  P
Sbjct: 26  GLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKP 85

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY+V++ GL      N ++  +A  Y       G   N+  Y+++ +   +A ++DE
Sbjct: 86  DVVTYSVVVNGLCK----NGRV-EEALDYFQTCRFNGXAINSMFYSSLIDGLGKAGRIDE 140

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      ALID
Sbjct: 141 AERLFEEMSEKGCTRDSYCYN-ALID 165



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/134 (31%), Positives = 71/134 (52%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ D+G  PDVV ++ V+      G+ +EAL  F     +G
Sbjct: 58  LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNG 117

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            A N+  Y+ LI GL     G A  + +A++   EM  KG   ++  Y A+ +A  +  K
Sbjct: 118 XAINSMFYSSLIDGL-----GKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGK 172

Query: 213 VDEARGLLQQMKAK 226
           VDEA  L ++M+ +
Sbjct: 173 VDEAMTLFKRMEEE 186



 Score = 53.9 bits (128), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 6/143 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
            + L+ ++ +KG        + VI      G+  E   VF  M+  G  PN   Y VLI 
Sbjct: 1   CVALYQEMDEKGIQVPPHVFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLID 60

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G A +       + DA + L  M+ +G +P+  TY+ V     +  +V+EA    Q  + 
Sbjct: 61  GYAKSGS-----VEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRF 115

Query: 226 KGFVPDEKAVKEALIDKRGQGFR 248
            G   +      +LID  G+  R
Sbjct: 116 NGXAIN-SMFYSSLIDGLGKAGR 137


>gi|115471383|ref|NP_001059290.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|33146978|dbj|BAC80051.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50508482|dbj|BAD30659.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610826|dbj|BAF21204.1| Os07g0249100 [Oryza sativa Japonica Group]
 gi|215767773|dbj|BAH00002.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 882

 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F + +++G+  N V    + D   K G   EA  +  ++  KG  P+V    ++++A  
Sbjct: 655 LFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALV 714

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            A +  EAL  F  M      PN YTY++LI GL      N   +     +  +M  +G+
Sbjct: 715 KAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFV-----FWQDMQKQGL 769

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            PN  TYT +     +   + +A  L ++ KA G +PD
Sbjct: 770 VPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPD 807



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 11/145 (7%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M D L K     EA ++F     +G  PD V + ++I+     GQ  EA R+F +ML +G
Sbjct: 429 MVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAG 488

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILG---DAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
              N   Y  LI+        N  I G   D  K   E++ +G +P+        +   +
Sbjct: 489 HNANPVVYTSLIR--------NFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFK 540

Query: 210 AQKVDEARGLLQQMKAKGFVPDEKA 234
           A +V++ R + + +++ GF+PD ++
Sbjct: 541 AGEVEKGRMIFEDIRSYGFLPDVRS 565



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L+K     EA  LF + K KG   +VV ++++I+ +   G+  EA  +   M+  G
Sbjct: 639 IVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKG 698

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN YT+  L+  L  A + N     +A      M      PN  TY+ +     R QK
Sbjct: 699 LTPNVYTWNSLLDALVKAEEIN-----EALVCFQSMKEMKCPPNTYTYSILINGLCRVQK 753

Query: 213 VDEARGLLQQMKAKGFVPD 231
            ++A    Q M+ +G VP+
Sbjct: 754 YNKAFVFWQDMQKQGLVPN 772



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 80/159 (50%), Gaps = 9/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           + FH+++ +GL  + V    M   L K G   EA +LFAQ++ +  +P   A+  +I  Y
Sbjct: 270 KFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGY 329

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
            SAG+ ++A ++  R+   G  P+  ++  ++  L     G  + + +A   L E++ K 
Sbjct: 330 GSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCL-----GKKRKVDEALS-LFEVMKKD 383

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             PN+ TY  + +      +V+EA  +L +M+     P+
Sbjct: 384 AEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPN 422



 Score = 66.6 bits (161), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 72/151 (47%), Gaps = 6/151 (3%)

Query: 95  DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           D + K G   +   +F  I+  G +PDV +++ +I     AGQ +E   +F  M   G A
Sbjct: 536 DCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFA 595

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
            +A  Y  ++ G   +       +  A + L EM  K ++P   TY A+ +   +  ++D
Sbjct: 596 LDARAYNAVVDGFCKSGK-----VHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLD 650

Query: 215 EARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
           EA  L ++ K+KG +     +  +LID  G+
Sbjct: 651 EAYMLFEEAKSKG-IELNVVLYSSLIDGFGK 680



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 5/132 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
             D   K G    A + F ++K +G  PD V++T++I     AG+  EA  +F +M A  
Sbjct: 255 CIDCFGKAGNVDMAWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAER 314

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P AY Y  +I G      G+A    DA K L  +  +G  P+  ++ ++     + +K
Sbjct: 315 SVPCAYAYNTMIMGY-----GSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRK 369

Query: 213 VDEARGLLQQMK 224
           VDEA  L + MK
Sbjct: 370 VDEALSLFEVMK 381



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 74/160 (46%), Gaps = 12/160 (7%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           IF  +R+ G   +      +   L+K G   E   +F  +K +G   D  A+ AV++ + 
Sbjct: 550 IFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFC 609

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKI--LGDAQKYLMEMVGK 191
            +G+  +A  +   M    V P   TY  ++ GL       AKI  L +A     E   K
Sbjct: 610 KSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGL-------AKIDRLDEAYMLFEEAKSK 662

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G+  N   Y+++ + F +  ++DEA  +L++M  KG  P+
Sbjct: 663 GIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPN 702



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 69/138 (50%), Gaps = 5/138 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +  AL++      AL+L  Q+++ G+   V   T ++ A A  GQ  +AL +   +  S 
Sbjct: 185 LIGALAEARRPERALELLRQMQEVGYEVGVHLFTTLVRALAREGQVADALALVDEVKGSC 244

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+   Y V I     A  GN  +   A K+  E+  +G++P+  +YT++     +A +
Sbjct: 245 LEPDIVLYNVCIDCFGKA--GNVDM---AWKFFHELKAQGLKPDDVSYTSMIWVLCKAGR 299

Query: 213 VDEARGLLQQMKAKGFVP 230
           + EA  L  QM+A+  VP
Sbjct: 300 LGEAEELFAQMEAERSVP 317



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 82/200 (41%), Gaps = 46/200 (23%)

Query: 72  RNLQE---IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAH 125
           R L+E   IF      G   + V    + D L K G   EA +LF ++ D GH  + V +
Sbjct: 437 RKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVY 496

Query: 126 TAVIEAYASAGQGKEALRVFMRMLASGVAP-----NAY---------------------- 158
           T++I  +   G+ ++  ++F  ++  G  P     N Y                      
Sbjct: 497 TSLIRNFFIHGRKEDGHKIFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRS 556

Query: 159 --------TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
                   +Y++LI GL  A  G A+   +       M  +G   +A  Y AV + F ++
Sbjct: 557 YGFLPDVRSYSILIHGLTKA--GQAR---ETSNIFHAMKQQGFALDARAYNAVVDGFCKS 611

Query: 211 QKVDEARGLLQQMKAKGFVP 230
            KV +A  +L++MK K   P
Sbjct: 612 GKVHKAYEILEEMKEKCVQP 631



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 78/182 (42%), Gaps = 8/182 (4%)

Query: 54  PPPYDPFKKVVDEEPTDPRNLQEIFHKMRT--EGLTNNAV-KMFDALSKDGLTHEALQLF 110
           P P D +  V+     D   L+++  +M     GL N A   +  AL +     +A+   
Sbjct: 108 PLPADAYHAVLPFLHHDLAALEKVLEEMAVLGYGLPNQACAHLAAALVRARRLDDAVLAV 167

Query: 111 AQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAA 170
           A ++     P   A+T +I A A A + + AL +  +M   G     + +  L++ LA  
Sbjct: 168 AVMRRLKFRPAFSAYTVLIGALAEARRPERALELLRQMQEVGYEVGVHLFTTLVRALARE 227

Query: 171 ADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
                  + DA   + E+ G  + P+   Y    + F +A  VD A     ++KA+G  P
Sbjct: 228 GQ-----VADALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMAWKFFHELKAQGLKP 282

Query: 231 DE 232
           D+
Sbjct: 283 DD 284



 Score = 47.0 bits (110), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 64/124 (51%), Gaps = 5/124 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L +    ++A   +  ++ +G +P+VV +T +I   A  G   +A  +F R  A+G
Sbjct: 744 LINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANG 803

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+A ++  LI+G++     NA    +A +   E   +G R N  +  ++ +A  +++ 
Sbjct: 804 GIPDAASFNALIEGMS-----NANRAMEAYQVFEETRLRGCRINIKSCISLLDALNKSEC 858

Query: 213 VDEA 216
           +++A
Sbjct: 859 LEQA 862



 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 3/94 (3%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
            +  M+ +GL  N V    M   L+K G   +A  LF + K  G +PD  +  A+IE  +
Sbjct: 760 FWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDAASFNALIEGMS 819

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
           +A +  EA +VF      G   N  +   L+  L
Sbjct: 820 NANRAMEAYQVFEETRLRGCRINIKSCISLLDAL 853


>gi|147798989|emb|CAN61637.1| hypothetical protein VITISV_008458 [Vitis vinifera]
          Length = 708

 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 34/188 (18%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F KM   GL  N +    + + L K G   +A +L  ++  +G  P+V  HT +I+    
Sbjct: 282 FWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCK 341

Query: 135 AGQGKEALRVFMRMLAS-GVAPNAYTYAVLIKGLA------------------------- 168
            G  ++A R+F++++ S G  PN +TY  +I G                           
Sbjct: 342 KGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTN 401

Query: 169 ---AAADGNAKILGDAQKY-LMEMVGK-GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
                 DG+ K+    + Y LM+++GK G  PN  TY A+ +   +   +DEA  LL ++
Sbjct: 402 TYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKV 461

Query: 224 KAKGFVPD 231
              G   D
Sbjct: 462 SVHGLQAD 469



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 7/150 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DA  + G  +  +  F ++ + G  P+V+  TA+I      G  K+A  +   M+  G
Sbjct: 265 IIDAFCQKGYVNRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRG 324

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV-GKGMRPNAGTYTAVFEAFVRAQ 211
             PN YT+  LI GL             A +  +++V   G +PN  TYTA+   + +  
Sbjct: 325 WKPNVYTHTTLIDGLCKKGWTE-----KAFRLFLKLVRSDGYKPNVHTYTAMINGYCKED 379

Query: 212 KVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           K++ A  LL +M+ +G VP+       LID
Sbjct: 380 KLNRAEMLLSRMQEQGLVPNTNTYT-TLID 408



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 70/154 (45%), Gaps = 7/154 (4%)

Query: 79  HKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQG 138
           H ++ +G+T   +        D  T+ +L  F ++   G  PD+ ++T +I  +    Q 
Sbjct: 464 HGLQADGVTYTILMSVHCRQAD--TNRSLVFFNKMLKVGFTPDIHSYTTLISXFCRQKQM 521

Query: 139 KEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAG 198
           KE+ R+F   ++ G+ P   TY  +I G      GN  +   A K    M   G  P++ 
Sbjct: 522 KESERLFEEAVSLGLIPTKKTYTSMICGYCRY--GNTSL---AVKLFQRMSNHGCAPDSI 576

Query: 199 TYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           TY A+     +  K+D+AR L   M  KG  P E
Sbjct: 577 TYGALISGLCKESKLDDARNLYDAMMDKGLSPCE 610



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 77/161 (47%), Gaps = 9/161 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +F +M   G++ + V    M  A    G   EA +    + ++G + D    T +I+A
Sbjct: 209 ENMFVEMCQRGVSPDCVSFKLMVVACCNMGRVLEAEKWLNAMVERGFIVDNATCTLIIDA 268

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +   G     +  F +M+  G+APN   +  LI GL     G+ K    A + L EMV +
Sbjct: 269 FCQKGYVNRVVGYFWKMVEMGLAPNVINFTALINGL--CKQGSIK---QAFELLEEMVRR 323

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEA-RGLLQQMKAKGFVPD 231
           G +PN  T+T + +   +    ++A R  L+ +++ G+ P+
Sbjct: 324 GWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPN 364



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/159 (23%), Positives = 71/159 (44%), Gaps = 9/159 (5%)

Query: 77  IFHKM-RTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +F K+ R++G   N      M +   K+   + A  L ++++++G +P+   +T +I+ +
Sbjct: 351 LFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGH 410

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G    A  +   M   G +PN YTY  +I GL          L +A + L ++   G
Sbjct: 411 CKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGS-----LDEAYRLLNKVSVHG 465

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           ++ +  TYT +     R    + +     +M   GF PD
Sbjct: 466 LQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTPD 504



 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 8/156 (5%)

Query: 77  IFHKMRTEGLT---NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
            F+KM   G T   ++   +     +     E+ +LF +    G +P    +T++I  Y 
Sbjct: 492 FFNKMLKVGFTPDIHSYTTLISXFCRQKQMKESERLFEEAVSLGLIPTKKTYTSMICGYC 551

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G    A+++F RM   G AP++ TY  LI GL   +      L DA+     M+ KG+
Sbjct: 552 RYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESK-----LDDARNLYDAMMDKGL 606

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFV 229
            P   T   +   + +      A  +L +++ + ++
Sbjct: 607 SPCEVTRLTLAYEYCKKDDSSTAINVLDRLEKRQWI 642


>gi|15241491|ref|NP_196981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|9755745|emb|CAC01876.1| putative protein [Arabidopsis thaliana]
 gi|332004692|gb|AED92075.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 938

 Score = 77.0 bits (188), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 42/139 (30%), Positives = 75/139 (53%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D+L K  +   AL L++Q+  +G   D+V +T +++    AG  +EA + F  +L   
Sbjct: 300 LVDSLFKANIYRHALALYSQMVVRGIPVDLVVYTVLMDGLFKAGDLREAEKTFKMLLEDN 359

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN  TY  L+ GL  A D     L  A+  + +M+ K + PN  TY+++   +V+   
Sbjct: 360 QVPNVVTYTALVDGLCKAGD-----LSSAEFIITQMLEKSVIPNVVTYSSMINGYVKKGM 414

Query: 213 VDEARGLLQQMKAKGFVPD 231
           ++EA  LL++M+ +  VP+
Sbjct: 415 LEEAVSLLRKMEDQNVVPN 433



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/134 (28%), Positives = 71/134 (52%), Gaps = 5/134 (3%)

Query: 97  LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
           L K G+T +A  +   ++ +G +PD V   +++  Y      ++AL  +  M+ +G++PN
Sbjct: 688 LCKLGMTKKAAMVMGDMEARGFIPDTVTFNSLMHGYFVGSHVRKALSTYSVMMEAGISPN 747

Query: 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
             TY  +I+GL+     +A ++ +  K+L EM  +GMRP+  TY A+     +   +  +
Sbjct: 748 VATYNTIIRGLS-----DAGLIKEVDKWLSEMKSRGMRPDDFTYNALISGQAKIGNMKGS 802

Query: 217 RGLLQQMKAKGFVP 230
             +  +M A G VP
Sbjct: 803 MTIYCEMIADGLVP 816



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/180 (26%), Positives = 81/180 (45%), Gaps = 21/180 (11%)

Query: 72  RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R     +  M   G++ N      +   LS  GL  E  +  +++K +G  PD   + A+
Sbjct: 730 RKALSTYSVMMEAGISPNVATYNTIIRGLSDAGLIKEVDKWLSEMKSRGMRPDDFTYNAL 789

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I   A  G  K ++ ++  M+A G+ P   TY VLI   A     N   +  A++ L EM
Sbjct: 790 ISGQAKIGNMKGSMTIYCEMIADGLVPKTSTYNVLISEFA-----NVGKMLQARELLKEM 844

Query: 189 VGKGMRPNAGTYTAVFEAFV------------RAQKVDEARGLLQQM-KAKGFVPDEKAV 235
             +G+ PN  TY  +                 +A  + EA+GLL++M + KG++P  + +
Sbjct: 845 GKRGVSPNTSTYCTMISGLCKLCTHPDVEWNKKAMYLAEAKGLLKEMVEEKGYIPCNQTI 904



 Score = 63.5 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 8/166 (4%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D R  ++ F  +  +    N V    + D L K G    A  +  Q+ +K  +P+VV ++
Sbjct: 344 DLREAEKTFKMLLEDNQVPNVVTYTALVDGLCKAGDLSSAEFIITQMLEKSVIPNVVTYS 403

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
           ++I  Y   G  +EA+ +  +M    V PN +TY  +I GL  A  G  ++  +  K   
Sbjct: 404 SMINGYVKKGMLEEAVSLLRKMEDQNVVPNGFTYGTVIDGLFKA--GKEEMAIELSK--- 458

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           EM   G+  N     A+     R  ++ E +GL++ M +KG   D+
Sbjct: 459 EMRLIGVEENNYILDALVNHLKRIGRIKEVKGLVKDMVSKGVTLDQ 504



 Score = 45.4 bits (106), Expect = 0.023,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 70/157 (44%), Gaps = 8/157 (5%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           +  MR +G+  +      M ++  K G +   L+L+ ++K  G  P +++   V+     
Sbjct: 561 YKGMREKGIEPDIATFNIMMNSQRKQGDSEGILKLWDKMKSCGIKPSLMSCNIVVGMLCE 620

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            G+ +EA+ +  +M+   + PN  TY + +   +     +A       K    ++  G++
Sbjct: 621 NGKMEEAIHILNQMMLMEIHPNLTTYRIFLDTSSKHKRADAIF-----KTHETLLSYGIK 675

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +   Y  +     +     +A  ++  M+A+GF+PD
Sbjct: 676 LSRQVYNTLIATLCKLGMTKKAAMVMGDMEARGFIPD 712



 Score = 42.4 bits (98), Expect = 0.20,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 57/150 (38%), Gaps = 40/150 (26%)

Query: 117 GHMPDVVAHTAVIEAYASAGQGKE-----------------------------------A 141
           G  PDVV  +++I      G+  E                                   A
Sbjct: 254 GFDPDVVTFSSIINRLCKGGKVLEGGLLLREMEEMSVYPNHVTYTTLVDSLFKANIYRHA 313

Query: 142 LRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYT 201
           L ++ +M+  G+  +   Y VL+ GL  A D     L +A+K    ++     PN  TYT
Sbjct: 314 LALYSQMVVRGIPVDLVVYTVLMDGLFKAGD-----LREAEKTFKMLLEDNQVPNVVTYT 368

Query: 202 AVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           A+ +   +A  +  A  ++ QM  K  +P+
Sbjct: 369 ALVDGLCKAGDLSSAEFIITQMLEKSVIPN 398



 Score = 41.6 bits (96), Expect = 0.32,   Method: Composition-based stats.
 Identities = 38/146 (26%), Positives = 59/146 (40%), Gaps = 14/146 (9%)

Query: 87  TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFM 146
           T++  K  DA+ K   THE L  +  IK    +     +  +I      G  K+A  V  
Sbjct: 652 TSSKHKRADAIFK---THETLLSYG-IKLSRQV-----YNTLIATLCKLGMTKKAAMVMG 702

Query: 147 RMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEA 206
            M A G  P+  T+  L+ G    +      +  A      M+  G+ PN  TY  +   
Sbjct: 703 DMEARGFIPDTVTFNSLMHGYFVGSH-----VRKALSTYSVMMEAGISPNVATYNTIIRG 757

Query: 207 FVRAQKVDEARGLLQQMKAKGFVPDE 232
              A  + E    L +MK++G  PD+
Sbjct: 758 LSDAGLIKEVDKWLSEMKSRGMRPDD 783


>gi|413924821|gb|AFW64753.1| hypothetical protein ZEAMMB73_344298 [Zea mays]
          Length = 698

 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 102/219 (46%), Gaps = 15/219 (6%)

Query: 19  SLRITNTRVNATLQ-RSLSSSSDQPTKKYVNTKSKLPPPYDPFKKVVD--EEPTDPRNLQ 75
           +++I NT +NA  + RS S +SD   +     KS+  P    F  ++       D R   
Sbjct: 185 NVQIYNTVINALCKCRSASQASDMLNQM---VKSRFNPDVVTFNTMIAGFCREGDVREAL 241

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++  +    GL  N +    +       G    A  L  ++  +GH PD++   A+I   
Sbjct: 242 KLLREAIRRGLEPNQLSYTPLIHGFCVRGEAMVASDLLVEMMGRGHTPDMITLGALIHGL 301

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             +GQ  +AL V  +M    V P+A  Y VLI GL        ++L  A+  L EM+ + 
Sbjct: 302 VVSGQVNDALIVREKMAERQVMPDANIYNVLISGLC-----KKRMLSAAKNLLEEMLEQK 356

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           ++P+   YT + + FVR+ K+ +AR + + M+ K   PD
Sbjct: 357 VQPDKFIYTTLIDGFVRSDKLSDARKIFEFMEEKA-CPD 394



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 5/143 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M     K G+  EA+   + ++  G +PD   +T +++ YA  G    +LR+   M+   
Sbjct: 401 MIKGYCKFGMMKEAVTCMSSMRKAGCIPDEFTYTTLVDGYAKKGDISASLRLLCDMMKRR 460

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN +TYA LI G     D  +     A+    +M  +G+ PN   YT +  +  +  K
Sbjct: 461 CKPNIFTYASLICGYCNIGDTYS-----AEDLFAKMQSEGLFPNVVHYTVLIGSLFKKDK 515

Query: 213 VDEARGLLQQMKAKGFVPDEKAV 235
           V +A    + M      P++  V
Sbjct: 516 VIQAAAYFEHMLLNHCPPNDATV 538



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 67/139 (48%), Gaps = 6/139 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   +     +A ++F  +++K   PD+VA+  +I+ Y   G  KEA+     M  +G
Sbjct: 367 LIDGFVRSDKLSDARKIFEFMEEKA-CPDIVAYNVMIKGYCKFGMMKEAVTCMSSMRKAG 425

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+ +TY  L+ G A   D +A +     + L +M+ +  +PN  TY ++   +     
Sbjct: 426 CIPDEFTYTTLVDGYAKKGDISASL-----RLLCDMMKRRCKPNIFTYASLICGYCNIGD 480

Query: 213 VDEARGLLQQMKAKGFVPD 231
              A  L  +M+++G  P+
Sbjct: 481 TYSAEDLFAKMQSEGLFPN 499



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 80/166 (48%), Gaps = 10/166 (6%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVKMFD----ALSKDGLTHEALQLFAQIKDKGHMPDVVAH 125
           D   ++ +  +MR  GL+ N V++++    AL K     +A  +  Q+      PDVV  
Sbjct: 166 DLTKVESLLGEMRARGLSPN-VQIYNTVINALCKCRSASQASDMLNQMVKSRFNPDVVTF 224

Query: 126 TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185
             +I  +   G  +EAL++    +  G+ PN  +Y  LI G      G A +  D    L
Sbjct: 225 NTMIAGFCREGDVREALKLLREAIRRGLEPNQLSYTPLIHGFCVR--GEAMVASD---LL 279

Query: 186 MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +EM+G+G  P+  T  A+    V + +V++A  + ++M  +  +PD
Sbjct: 280 VEMMGRGHTPDMITLGALIHGLVVSGQVNDALIVREKMAERQVMPD 325



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 67/149 (44%), Gaps = 6/149 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M     ++G   EAL+L  +   +G  P+ +++T +I  +   G+   A  + + M+  G
Sbjct: 227 MIAGFCREGDVREALKLLREAIRRGLEPNQLSYTPLIHGFCVRGEAMVASDLLVEMMGRG 286

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  T   LI GL  +   N     DA     +M  + + P+A  Y  +     + + 
Sbjct: 287 HTPDMITLGALIHGLVVSGQVN-----DALIVREKMAERQVMPDANIYNVLISGLCKKRM 341

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALID 241
           +  A+ LL++M  +   PD K +   LID
Sbjct: 342 LSAAKNLLEEMLEQKVQPD-KFIYTTLID 369



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +M T+G+    V    +   L + G   +   L  +++ +G  P+V  +  VI A  
Sbjct: 138 LLGEMETKGIIPTVVTYGAIIHWLGRKGDLTKVESLLGEMRARGLSPNVQIYNTVINALC 197

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
                 +A  +  +M+ S   P+  T+  +I G     D     + +A K L E + +G+
Sbjct: 198 KCRSASQASDMLNQMVKSRFNPDVVTFNTMIAGFCREGD-----VREALKLLREAIRRGL 252

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            PN  +YT +   F    +   A  LL +M  +G  PD
Sbjct: 253 EPNQLSYTPLIHGFCVRGEAMVASDLLVEMMGRGHTPD 290



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 62/152 (40%), Gaps = 8/152 (5%)

Query: 84  EGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140
           EG    AV    + D   + G     L L  +++ KG +P VV + A+I      G   +
Sbjct: 110 EGCVPGAVFYNVLIDGYCRRGDIGRGLLLLGEMETKGIIPTVVTYGAIIHWLGRKGDLTK 169

Query: 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTY 200
              +   M A G++PN   Y  +I  L      +      A   L +MV     P+  T+
Sbjct: 170 VESLLGEMRARGLSPNVQIYNTVINALCKCRSAS-----QASDMLNQMVKSRFNPDVVTF 224

Query: 201 TAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
             +   F R   V EA  LL++   +G  P++
Sbjct: 225 NTMIAGFCREGDVREALKLLREAIRRGLEPNQ 256



 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 10/141 (7%)

Query: 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
           G T+ A  LFA+++ +G  P+VV +T +I +     +  +A   F  ML +   PN  T 
Sbjct: 479 GDTYSAEDLFAKMQSEGLFPNVVHYTVLIGSLFKKDKVIQAAAYFEHMLLNHCPPNDATV 538

Query: 161 AVLIKGLAAAADG--NAKILGDAQKY----LME----MVGKGMRPNAGTYTAVFEAFVRA 210
             L+ GL     G  N+      Q +    L++    ++  G+ P    Y A+  +  R 
Sbjct: 539 HYLVNGLVNCRHGMVNSNRSDTKQAHEKSALLDVFRGLISDGLDPRISAYNAIIFSLCRH 598

Query: 211 QKVDEARGLLQQMKAKGFVPD 231
             + +A  L  +M  KG +PD
Sbjct: 599 NMLGKAMDLKDKMSNKGCLPD 619


>gi|357481229|ref|XP_003610900.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512235|gb|AES93858.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1508

 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 82/163 (50%), Gaps = 8/163 (4%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +F K+++ G + +AV    +  A SK+G T +   +  ++   G   D + +  +I  
Sbjct: 391 EHLFEKLKSNGFSPDAVTYNSLLYAFSKEGNTEKVRDISEEMVKMGFGKDEMTYNTIIHM 450

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y   G+  EALR++  M +SG  P+A TY VLI  L     G A  + +A K + EM+  
Sbjct: 451 YGKHGRHDEALRLYRDMKSSGRNPDAVTYTVLIDLL-----GKASKIEEASKVMSEMLDA 505

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
           G++P   TY+A+  A+ +  +  EA     +M+  G   D  A
Sbjct: 506 GVKPTLHTYSALICAYAKVGRRVEAEETFNRMRESGIKADHLA 548



 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 82/163 (50%), Gaps = 11/163 (6%)

Query: 72  RNLQEIFHKM---RTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R++ E   KM   + E   N  + M+    K G   EAL+L+  +K  G  PD V +T +
Sbjct: 426 RDISEEMVKMGFGKDEMTYNTIIHMY---GKHGRHDEALRLYRDMKSSGRNPDAVTYTVL 482

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I+    A + +EA +V   ML +GV P  +TY+ LI    A A    ++  +A++    M
Sbjct: 483 IDLLGKASKIEEASKVMSEMLDAGVKPTLHTYSALI---CAYAKVGRRV--EAEETFNRM 537

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              G++ +   Y+ + + F+R  ++ +A  L Q+M   GF PD
Sbjct: 538 RESGIKADHLAYSVMLDFFLRFNEIKKAAALYQEMIEAGFTPD 580



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 81/166 (48%), Gaps = 8/166 (4%)

Query: 81  MRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140
           +R + +T N   +  A S++    EA+ +F+ ++     PD+  + A+I  Y   G   +
Sbjct: 332 LRPDIITYNT--LISACSRESNLKEAIGVFSHMESNRCQPDLWTYNAMISVYGRCGFALK 389

Query: 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTY 200
           A  +F ++ ++G +P+A TY  L+   A + +GN + + D  +   EMV  G   +  TY
Sbjct: 390 AEHLFEKLKSNGFSPDAVTYNSLL--YAFSKEGNTEKVRDISE---EMVKMGFGKDEMTY 444

Query: 201 TAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
             +   + +  + DEA  L + MK+ G  PD       LID  G+ 
Sbjct: 445 NTIIHMYGKHGRHDEALRLYRDMKSSGRNPD-AVTYTVLIDLLGKA 489



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 76/165 (46%), Gaps = 12/165 (7%)

Query: 74  LQEIFHKMRTEGLTNNAVKMFDAL------SKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           + E+F+ MR  G   + V  F+ L      S   ++  A++L  ++   G  PD++ +  
Sbjct: 283 VNEMFNLMRERGCEPDIVS-FNTLINAKVKSCATVSGLAIELLDEVGKFGLRPDIITYNT 341

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           +I A +     KEA+ VF  M ++   P+ +TY  +I     +  G       A+    +
Sbjct: 342 LISACSRESNLKEAIGVFSHMESNRCQPDLWTYNAMI-----SVYGRCGFALKAEHLFEK 396

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           +   G  P+A TY ++  AF +    ++ R + ++M   GF  DE
Sbjct: 397 LKSNGFSPDAVTYNSLLYAFSKEGNTEKVRDISEEMVKMGFGKDE 441



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 8/154 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           ++  M++ G   +AV    + D L K     EA ++ +++ D G  P +  ++A+I AYA
Sbjct: 463 LYRDMKSSGRNPDAVTYTVLIDLLGKASKIEEASKVMSEMLDAGVKPTLHTYSALICAYA 522

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G+  EA   F RM  SG+  +   Y+V++       +     +  A     EM+  G 
Sbjct: 523 KVGRRVEAEETFNRMRESGIKADHLAYSVMLDFFLRFNE-----IKKAAALYQEMIEAGF 577

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
            P+ G Y  +  A VR    D    ++Q  K  G
Sbjct: 578 TPDTGLYEVMLPALVRENMGDVIERVVQDTKELG 611



 Score = 46.2 bits (108), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 69/160 (43%), Gaps = 8/160 (5%)

Query: 77   IFHKMRTEG---LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
            IF+ M  EG      +   +  AL  DG   E   +  +++D        +   ++EA+A
Sbjct: 846  IFNTMMREGPSPTVESVNGLLQALIVDGRLSELYVVIQELQDMDLKISKSSILLMLEAFA 905

Query: 134  SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             AG   E  +V+  M A+G  P  + Y ++I  L        K + D +  L EM   G 
Sbjct: 906  QAGNLFEVQKVYNGMKAAGYFPTMHLYRLMIGLLC-----RFKRVRDVRVMLSEMGEAGF 960

Query: 194  RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK 233
            +P+   + +V + +   ++      + Q ++  G  PDE+
Sbjct: 961  KPDLQIFNSVLKLYSSIEEFQNMGVIYQMIQDAGLAPDEE 1000



 Score = 45.4 bits (106), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 27/123 (21%), Positives = 60/123 (48%), Gaps = 5/123 (4%)

Query: 109  LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
            + +++ + G  PD+    +V++ Y+S  + +    ++  +  +G+AP+  TY  LI    
Sbjct: 951  MLSEMGEAGFKPDLQIFNSVLKLYSSIEEFQNMGVIYQMIQDAGLAPDEETYNTLIT--M 1008

Query: 169  AAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
               D   +   +    + +M   G+ P   TY ++  AF + Q  D+A  L +++++ G+
Sbjct: 1009 YCRDHRPE---EGLSLMHKMKSLGLEPKRDTYRSMIAAFSKQQLYDQAEELFEELRSNGY 1065

Query: 229  VPD 231
              D
Sbjct: 1066 KLD 1068


>gi|223635763|sp|Q9LER0.2|PP381_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g14770, mitochondrial; Flags: Precursor
          Length = 940

 Score = 77.0 bits (188), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 42/139 (30%), Positives = 75/139 (53%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D+L K  +   AL L++Q+  +G   D+V +T +++    AG  +EA + F  +L   
Sbjct: 302 LVDSLFKANIYRHALALYSQMVVRGIPVDLVVYTVLMDGLFKAGDLREAEKTFKMLLEDN 361

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN  TY  L+ GL  A D     L  A+  + +M+ K + PN  TY+++   +V+   
Sbjct: 362 QVPNVVTYTALVDGLCKAGD-----LSSAEFIITQMLEKSVIPNVVTYSSMINGYVKKGM 416

Query: 213 VDEARGLLQQMKAKGFVPD 231
           ++EA  LL++M+ +  VP+
Sbjct: 417 LEEAVSLLRKMEDQNVVPN 435



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/134 (28%), Positives = 71/134 (52%), Gaps = 5/134 (3%)

Query: 97  LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
           L K G+T +A  +   ++ +G +PD V   +++  Y      ++AL  +  M+ +G++PN
Sbjct: 690 LCKLGMTKKAAMVMGDMEARGFIPDTVTFNSLMHGYFVGSHVRKALSTYSVMMEAGISPN 749

Query: 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
             TY  +I+GL+     +A ++ +  K+L EM  +GMRP+  TY A+     +   +  +
Sbjct: 750 VATYNTIIRGLS-----DAGLIKEVDKWLSEMKSRGMRPDDFTYNALISGQAKIGNMKGS 804

Query: 217 RGLLQQMKAKGFVP 230
             +  +M A G VP
Sbjct: 805 MTIYCEMIADGLVP 818



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/180 (26%), Positives = 81/180 (45%), Gaps = 21/180 (11%)

Query: 72  RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R     +  M   G++ N      +   LS  GL  E  +  +++K +G  PD   + A+
Sbjct: 732 RKALSTYSVMMEAGISPNVATYNTIIRGLSDAGLIKEVDKWLSEMKSRGMRPDDFTYNAL 791

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I   A  G  K ++ ++  M+A G+ P   TY VLI   A     N   +  A++ L EM
Sbjct: 792 ISGQAKIGNMKGSMTIYCEMIADGLVPKTSTYNVLISEFA-----NVGKMLQARELLKEM 846

Query: 189 VGKGMRPNAGTYTAVFEAFV------------RAQKVDEARGLLQQM-KAKGFVPDEKAV 235
             +G+ PN  TY  +                 +A  + EA+GLL++M + KG++P  + +
Sbjct: 847 GKRGVSPNTSTYCTMISGLCKLCTHPDVEWNKKAMYLAEAKGLLKEMVEEKGYIPCNQTI 906



 Score = 63.5 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 8/166 (4%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D R  ++ F  +  +    N V    + D L K G    A  +  Q+ +K  +P+VV ++
Sbjct: 346 DLREAEKTFKMLLEDNQVPNVVTYTALVDGLCKAGDLSSAEFIITQMLEKSVIPNVVTYS 405

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
           ++I  Y   G  +EA+ +  +M    V PN +TY  +I GL  A  G  ++  +  K   
Sbjct: 406 SMINGYVKKGMLEEAVSLLRKMEDQNVVPNGFTYGTVIDGLFKA--GKEEMAIELSK--- 460

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           EM   G+  N     A+     R  ++ E +GL++ M +KG   D+
Sbjct: 461 EMRLIGVEENNYILDALVNHLKRIGRIKEVKGLVKDMVSKGVTLDQ 506



 Score = 45.4 bits (106), Expect = 0.024,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 70/157 (44%), Gaps = 8/157 (5%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           +  MR +G+  +      M ++  K G +   L+L+ ++K  G  P +++   V+     
Sbjct: 563 YKGMREKGIEPDIATFNIMMNSQRKQGDSEGILKLWDKMKSCGIKPSLMSCNIVVGMLCE 622

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            G+ +EA+ +  +M+   + PN  TY + +   +     +A       K    ++  G++
Sbjct: 623 NGKMEEAIHILNQMMLMEIHPNLTTYRIFLDTSSKHKRADAIF-----KTHETLLSYGIK 677

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +   Y  +     +     +A  ++  M+A+GF+PD
Sbjct: 678 LSRQVYNTLIATLCKLGMTKKAAMVMGDMEARGFIPD 714



 Score = 42.4 bits (98), Expect = 0.21,   Method: Composition-based stats.
 Identities = 34/150 (22%), Positives = 57/150 (38%), Gaps = 40/150 (26%)

Query: 117 GHMPDVVAHTAVIEAYASAGQGKE-----------------------------------A 141
           G  PDVV  +++I      G+  E                                   A
Sbjct: 256 GFDPDVVTFSSIINRLCKGGKVLEGGLLLREMEEMSVYPNHVTYTTLVDSLFKANIYRHA 315

Query: 142 LRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYT 201
           L ++ +M+  G+  +   Y VL+ GL  A D     L +A+K    ++     PN  TYT
Sbjct: 316 LALYSQMVVRGIPVDLVVYTVLMDGLFKAGD-----LREAEKTFKMLLEDNQVPNVVTYT 370

Query: 202 AVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           A+ +   +A  +  A  ++ QM  K  +P+
Sbjct: 371 ALVDGLCKAGDLSSAEFIITQMLEKSVIPN 400



 Score = 41.6 bits (96), Expect = 0.32,   Method: Composition-based stats.
 Identities = 38/146 (26%), Positives = 59/146 (40%), Gaps = 14/146 (9%)

Query: 87  TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFM 146
           T++  K  DA+ K   THE L  +  IK    +     +  +I      G  K+A  V  
Sbjct: 654 TSSKHKRADAIFK---THETLLSYG-IKLSRQV-----YNTLIATLCKLGMTKKAAMVMG 704

Query: 147 RMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEA 206
            M A G  P+  T+  L+ G    +      +  A      M+  G+ PN  TY  +   
Sbjct: 705 DMEARGFIPDTVTFNSLMHGYFVGSH-----VRKALSTYSVMMEAGISPNVATYNTIIRG 759

Query: 207 FVRAQKVDEARGLLQQMKAKGFVPDE 232
              A  + E    L +MK++G  PD+
Sbjct: 760 LSDAGLIKEVDKWLSEMKSRGMRPDD 785


>gi|15240891|ref|NP_195731.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174092|sp|Q9LFC5.1|PP360_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g01110
 gi|6759434|emb|CAB69839.1| putative protein [Arabidopsis thaliana]
 gi|28973740|gb|AAO64186.1| unknown protein [Arabidopsis thaliana]
 gi|110736884|dbj|BAF00399.1| hypothetical protein [Arabidopsis thaliana]
 gi|332002917|gb|AED90300.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 729

 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 68/139 (48%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M +AL KDG   +     +Q+++KG  PD+V +  +I AY+S G  +EA  +   M   G
Sbjct: 241 MVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKG 300

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            +P  YTY  +I GL             A++   EM+  G+ P++ TY ++     +   
Sbjct: 301 FSPGVYTYNTVINGLCKHGKYER-----AKEVFAEMLRSGLSPDSTTYRSLLMEACKKGD 355

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V E   +   M+++  VPD
Sbjct: 356 VVETEKVFSDMRSRDVVPD 374



 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 85/182 (46%), Gaps = 10/182 (5%)

Query: 50  KSKLPPPYDPFKKVVDE--EPTDPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTH 104
           +S L P    ++ ++ E  +  D    +++F  MR+  +  + V    M    ++ G   
Sbjct: 333 RSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLD 392

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +AL  F  +K+ G +PD V +T +I+ Y   G    A+ +   ML  G A +  TY  ++
Sbjct: 393 KALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTIL 452

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            GL        K+LG+A K   EM  + + P++ T T + +   +   +  A  L Q+MK
Sbjct: 453 HGLC-----KRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMK 507

Query: 225 AK 226
            K
Sbjct: 508 EK 509



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/139 (23%), Positives = 68/139 (48%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   K G    A++LF ++K+K    DVV +  +++ +   G    A  ++  M++  
Sbjct: 486 LIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKE 545

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P   +Y++L+  L +        L +A +   EM+ K ++P      ++ + + R+  
Sbjct: 546 ILPTPISYSILVNALCSKGH-----LAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGN 600

Query: 213 VDEARGLLQQMKAKGFVPD 231
             +    L++M ++GFVPD
Sbjct: 601 ASDGESFLEKMISEGFVPD 619



 Score = 59.3 bits (142), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 74/173 (42%), Gaps = 32/173 (18%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +AL   G   EA +++ ++  K   P V+   ++I+ Y  +G   +      +M++ G
Sbjct: 556 LVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEG 615

Query: 153 VAPNAYTYAVLIKGLA-----AAADG-------------------NAKILG--------D 180
             P+  +Y  LI G       + A G                   N+ + G        +
Sbjct: 616 FVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKE 675

Query: 181 AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK 233
           A+  L +M+ +G+ P+  TYT +   FV    + EA  +  +M  +GF PD+K
Sbjct: 676 AEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSPDDK 728



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 77/170 (45%), Gaps = 9/170 (5%)

Query: 75  QEIFHKMRTEGLTNNAVKMFDAL---SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+F +M   GL+ ++      L    K G   E  ++F+ ++ +  +PD+V  ++++  
Sbjct: 325 KEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSL 384

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +  +G   +AL  F  +  +G+ P+   Y +LI+G          ++  A     EM+ +
Sbjct: 385 FTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKG-----MISVAMNLRNEMLQQ 439

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           G   +  TY  +     + + + EA  L  +M  +   PD   +   LID
Sbjct: 440 GCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLT-ILID 488



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/178 (21%), Positives = 73/178 (41%), Gaps = 8/178 (4%)

Query: 72  RNLQEIFHKMRTEGLT---NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R   E F  +R++G T   +    +  +L + G    A  ++ +I   G   +V     +
Sbjct: 182 REAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIM 241

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           + A    G+ ++      ++   GV P+  TY  LI   ++       ++ +A + +  M
Sbjct: 242 VNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKG-----LMEEAFELMNAM 296

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
            GKG  P   TY  V     +  K + A+ +  +M   G  PD    +  L++   +G
Sbjct: 297 PGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKG 354



 Score = 42.0 bits (97), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 29/139 (20%), Positives = 57/139 (41%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K G    A ++FA++   G  PD   + +++      G   E  +VF  M +  
Sbjct: 311 VINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRD 370

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V P+   ++ ++     + +     L  A  Y   +   G+ P+   YT + + + R   
Sbjct: 371 VVPDLVCFSSMMSLFTRSGN-----LDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGM 425

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +  A  L  +M  +G   D
Sbjct: 426 ISVAMNLRNEMLQQGCAMD 444


>gi|297832386|ref|XP_002884075.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329915|gb|EFH60334.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 462

 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 72/140 (51%), Gaps = 5/140 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D +       EA+ L +++ + G  PD   +  +++ + +  +G EA+ V+ +M   G
Sbjct: 235 LIDNVCNSKNLREAMYLVSKLGNAGFKPDCFLYNTIMKGFCTLSKGSEAIGVYKKMKEEG 294

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V P+  TY  LI GL+ +       + +A+ YL  MV  G  P+  TYT++     R  +
Sbjct: 295 VEPDQITYNTLIYGLSKSGR-----VEEARMYLKTMVDAGYEPDTATYTSLMNGMCRKGE 349

Query: 213 VDEARGLLQQMKAKGFVPDE 232
              A  LL++M+A+G  P++
Sbjct: 350 SLGALSLLEEMEARGCAPND 369



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 70/142 (49%), Gaps = 8/142 (5%)

Query: 86  LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVF 145
           L N  +K F  LSK     EA+ ++ ++K++G  PD + +  +I   + +G+ +EA    
Sbjct: 266 LYNTIMKGFCTLSKGS---EAIGVYKKMKEEGVEPDQITYNTLIYGLSKSGRVEEARMYL 322

Query: 146 MRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFE 205
             M+ +G  P+  TY  L+ G+    +     LG A   L EM  +G  PN  TY  +  
Sbjct: 323 KTMVDAGYEPDTATYTSLMNGMCRKGES----LG-ALSLLEEMEARGCAPNDCTYNTLLH 377

Query: 206 AFVRAQKVDEARGLLQQMKAKG 227
              +A+ +D+   L + MK+ G
Sbjct: 378 GLCKARLMDKGMELYELMKSSG 399



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 8/143 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           ++ KM+ EG+  + +    +   LSK G   EA      + D G+ PD   +T+++    
Sbjct: 286 VYKKMKEEGVEPDQITYNTLIYGLSKSGRVEEARMYLKTMVDAGYEPDTATYTSLMNGMC 345

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G+   AL +   M A G APN  TY  L+ GL       A+++    +    M   G+
Sbjct: 346 RKGESLGALSLLEEMEARGCAPNDCTYNTLLHGLC-----KARLMDKGMELYELMKSSGV 400

Query: 194 RPNAGTYTAVFEAFVRAQKVDEA 216
           +     Y  +  + V++ KV EA
Sbjct: 401 KLETNGYATLVRSLVKSGKVAEA 423



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 61/130 (46%), Gaps = 6/130 (4%)

Query: 105 EALQLFAQIKDKGHMP-DVVAHTAVIEAYASAGQGKEALRVFMRMLAS--GVAPNAYTYA 161
           +A  LF  I     +P D+  H +V+++YAS     + +++F  +L S     P   T+ 
Sbjct: 66  DAKSLFNSIAATSRIPLDLKFHNSVLQSYASIAAVDDTVKLFQHILKSQPNFRPGRSTFL 125

Query: 162 VLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221
           +L+     A D +   + +  + L  MV  G+ P+  T      +     +VDEA+ L++
Sbjct: 126 ILLSHACRAPDSS---ISNVHRVLNLMVNNGLEPDQVTTDIAVRSLCETGRVDEAKDLMK 182

Query: 222 QMKAKGFVPD 231
           ++  K   PD
Sbjct: 183 ELTEKHSPPD 192



 Score = 46.2 bits (108), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 70/167 (41%), Gaps = 15/167 (8%)

Query: 73  NLQEIFHKMRTEGL------TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           N+  + + M   GL      T+ AV+   +L + G   EA  L  ++ +K   PD   + 
Sbjct: 141 NVHRVLNLMVNNGLEPDQVTTDIAVR---SLCETGRVDEAKDLMKELTEKHSPPDTYTYN 197

Query: 127 AVIEAYASAGQGKEALRVFMRMLAS-GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185
            +++                 M     V P+  ++ +LI  +      N+K L +A   +
Sbjct: 198 FLLKHLCKCKDLHVVYEFVDEMRDDFDVKPDLVSFTILIDNVC-----NSKNLREAMYLV 252

Query: 186 MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
            ++   G +P+   Y  + + F    K  EA G+ ++MK +G  PD+
Sbjct: 253 SKLGNAGFKPDCFLYNTIMKGFCTLSKGSEAIGVYKKMKEEGVEPDQ 299


>gi|260780426|gb|ACX50759.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780428|gb|ACX50760.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780432|gb|ACX50762.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780434|gb|ACX50763.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780436|gb|ACX50764.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780438|gb|ACX50765.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780440|gb|ACX50766.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780442|gb|ACX50767.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780444|gb|ACX50768.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780446|gb|ACX50769.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780448|gb|ACX50770.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780450|gb|ACX50771.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780452|gb|ACX50772.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780454|gb|ACX50773.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780456|gb|ACX50774.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780458|gb|ACX50775.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780460|gb|ACX50776.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780462|gb|ACX50777.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780464|gb|ACX50778.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780466|gb|ACX50779.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780470|gb|ACX50781.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780472|gb|ACX50782.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780474|gb|ACX50783.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780476|gb|ACX50784.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780478|gb|ACX50785.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780480|gb|ACX50786.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780482|gb|ACX50787.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780486|gb|ACX50789.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780488|gb|ACX50790.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780490|gb|ACX50791.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780492|gb|ACX50792.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780494|gb|ACX50793.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780498|gb|ACX50795.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780500|gb|ACX50796.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780502|gb|ACX50797.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780504|gb|ACX50798.1| AT1G03560-like protein [Capsella bursa-pastoris]
          Length = 199

 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 76/146 (52%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+G  +E   +F  +  KG  P+V  +T +I+ YA +G  ++A+R+  RM+  G  P
Sbjct: 26  GLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGNVEDAIRLLHRMIDEGFKP 85

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  T++V++ GL      N ++  +A  Y       G+  N+  Y+++ +   +A ++DE
Sbjct: 86  DVVTFSVVVNGLCK----NGRV-EEALDYFQTCQFNGLAINSMFYSSLIDGLGKAGRIDE 140

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      ALID
Sbjct: 141 AERLFEEMSEKGCTRDSYCYN-ALID 165



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 72/134 (53%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ D+G  PDVV  + V+      G+ +EAL  F     +G
Sbjct: 58  LIDGYAKSGNVEDAIRLLHRMIDEGFKPDVVTFSVVVNGLCKNGRVEEALDYFQTCQFNG 117

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +A N+  Y+ LI GL     G A  + +A++   EM  KG   ++  Y A+ +AF +  K
Sbjct: 118 LAINSMFYSSLIDGL-----GKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHGK 172

Query: 213 VDEARGLLQQMKAK 226
           VDEA  L ++M+ +
Sbjct: 173 VDEAMTLFKRMEEE 186



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 64/143 (44%), Gaps = 6/143 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
            + L+ ++ +KG      A + VI      G+  E   VF  M+  G  PN   Y VLI 
Sbjct: 1   CVALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLID 60

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G A +  GN +   DA + L  M+ +G +P+  T++ V     +  +V+EA    Q  + 
Sbjct: 61  GYAKS--GNVE---DAIRLLHRMIDEGFKPDVVTFSVVVNGLCKNGRVEEALDYFQTCQF 115

Query: 226 KGFVPDEKAVKEALIDKRGQGFR 248
            G   +      +LID  G+  R
Sbjct: 116 NGLAIN-SMFYSSLIDGLGKAGR 137


>gi|449436958|ref|XP_004136259.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Cucumis sativus]
 gi|449497032|ref|XP_004160294.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Cucumis sativus]
          Length = 504

 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 107/225 (47%), Gaps = 19/225 (8%)

Query: 17  KRSLRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLP--PPYDPFKKVVDEEPTDPRNL 74
           K SL+  +T +N  ++   S   D   K  VN +SKL   P    F  +V     +  +L
Sbjct: 151 KPSLKAISTCLNLLVE---SDRVDLARKLLVNARSKLNLRPNTCIFNILVKHHCRNG-DL 206

Query: 75  Q---EIFHKMRTEGLTN-NAVK---MFDALSKDGLTHEALQLFAQIKDKGH-MPDVVAHT 126
           Q   E+  +M++  ++  N V    +   L ++G   EA++ F ++  K + +PD + + 
Sbjct: 207 QAAFEVVKEMKSARVSYPNLVTYSTLIGGLCENGKLKEAIEFFEEMVSKDNILPDALTYN 266

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
            +I  +   G+   A  +   M ++G +PN + Y+VL+ G           L +A++   
Sbjct: 267 ILINGFCQRGKVDRARTILEFMKSNGCSPNVFNYSVLMNGYCKEGR-----LQEAKEVFN 321

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           E+   GM+P+  +YT +     R  +VDEA  LLQQMK K    D
Sbjct: 322 EIKSLGMKPDTISYTTLINCLCRTGRVDEATELLQQMKDKDCRAD 366



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 69/157 (43%), Gaps = 8/157 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           I   M++ G + N      + +   K+G   EA ++F +IK  G  PD +++T +I    
Sbjct: 284 ILEFMKSNGCSPNVFNYSVLMNGYCKEGRLQEAKEVFNEIKSLGMKPDTISYTTLINCLC 343

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G+  EA  +  +M       +  T+ V++ GL            +A   + ++  +G 
Sbjct: 344 RTGRVDEATELLQQMKDKDCRADTVTFNVMLGGLCREGR-----FDEALDMVQKLPFEGF 398

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
             N G+Y  V     +  ++ +A  LL  M  +GFVP
Sbjct: 399 YLNKGSYRIVLNFLTQKGELRKATELLGLMLNRGFVP 435


>gi|125582553|gb|EAZ23484.1| hypothetical protein OsJ_07180 [Oryza sativa Japonica Group]
          Length = 457

 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 79/156 (50%), Gaps = 12/156 (7%)

Query: 76  EIFHKMRTEG-----LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           E+ H+++ +G     ++ N V   D L+K G T EAL+L  ++  KG  PD++ ++ +  
Sbjct: 263 ELLHQLKDKGCAPVLISYNTV--IDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAA 320

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
                 + ++A+R F ++   G+ PN   Y  +I GL    + ++ I  D   Y   M+G
Sbjct: 321 GLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAI--DLFAY---MIG 375

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK 226
            G  PN  TYT + E       + EAR LL ++ ++
Sbjct: 376 NGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSR 411



 Score = 73.9 bits (180), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 75/159 (47%), Gaps = 8/159 (5%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +  AL + G    A++L  Q+KDKG  P ++++  VI+    AG+ KEAL +   M++ G
Sbjct: 248 LLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKG 307

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+  TY+ +  GL          + DA +   ++   G+RPN   Y A+     + ++
Sbjct: 308 LQPDIITYSTIAAGLC-----REDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRE 362

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVI 251
              A  L   M   G +P+E       I   G  + G+I
Sbjct: 363 THSAIDLFAYMIGNGCMPNESTYT---ILIEGLAYEGLI 398



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/195 (24%), Positives = 87/195 (44%), Gaps = 26/195 (13%)

Query: 58  DPFKKVVDEEPTDP--RNLQEIFHKMRTEGLTNNAVKMFDALSK-----DGLTH------ 104
           D  +++V E P +P       +   +   G T NA+ + D + +     D +T+      
Sbjct: 17  DAARRLVAEMPVEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEA 76

Query: 105 --------EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
                   +A++L  +++DKG  PD+V +  V+      G+  +A+     + + G  PN
Sbjct: 77  TCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPN 136

Query: 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
             +Y +++KGL  A         DA++ + EM  KG  PN  T+  +     R   V+ A
Sbjct: 137 TVSYNIVLKGLCTAERWE-----DAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPA 191

Query: 217 RGLLQQMKAKGFVPD 231
             +L+Q+   G  P+
Sbjct: 192 LEVLEQIPKYGCTPN 206



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 5/127 (3%)

Query: 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
            +A +L  ++  KG  P+VV    +I      G  + AL V  ++   G  PN+ +Y  L
Sbjct: 154 EDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPL 213

Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           +           K +  A  +L  MV +G  P+  +Y  +  A  R+ +VD A  LL Q+
Sbjct: 214 LHAFC-----KQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQL 268

Query: 224 KAKGFVP 230
           K KG  P
Sbjct: 269 KDKGCAP 275


>gi|77552391|gb|ABA95188.1| salt-inducible protein, putative [Oryza sativa Japonica Group]
          Length = 938

 Score = 77.0 bits (188), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 54/174 (31%), Positives = 88/174 (50%), Gaps = 24/174 (13%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY-- 132
           FH M   GL+ + +    + +   K G   EA QLF Q+ + G  PDV+A+T +++ +  
Sbjct: 750 FHDMVQRGLSVDVIVYTILMNGYCKAGRLQEACQLFVQMTNLGIKPDVIAYTVLLDGHLK 809

Query: 133 ASAGQGKEAL----RVFM------RMLAS----GVAPNAYTYAVLIKGLAAAADGNAKIL 178
            +  QG E +    R F+      ++L+S     + P+   Y VLI G        A+ L
Sbjct: 810 ETLQQGWEGIAKERRSFLLRANHNKLLSSMKDMQIEPDVPCYTVLIDGKC-----KAEYL 864

Query: 179 GDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
            +A++   EM+ KG+ P+A  YTA+   +    ++ +A  LLQ+M  KG  PDE
Sbjct: 865 VEARELFDEMLQKGLTPDAYAYTALINGYCSQGEISKAEDLLQEMIDKGIEPDE 918



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 8/153 (5%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F K +  GL  + V      D   K+G  +EA++L  ++K  G  PD + +T +I  Y  
Sbjct: 505 FLKFKDSGLHLDKVIYNIAMDTYCKNGNMNEAVKLLNEMKYGGLTPDKIHYTCLISGYCL 564

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            G+ + A +VF  ML + + P+  TY +L  G   +      ++ +    L  M  +G+ 
Sbjct: 565 KGEMQNAQQVFEEMLKANIEPDIVTYNILASGFCKSG-----LVMEVFDLLDRMADQGLE 619

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
           PN+ TY      F R   + EA  L   ++ KG
Sbjct: 620 PNSLTYGIAIVGFCRGGNLSEAEVLFNVVEEKG 652



 Score = 64.3 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 12/161 (7%)

Query: 92  KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
           K+     ++G   +A   F  +  +G   DV+ +T ++  Y  AG+ +EA ++F++M   
Sbjct: 732 KLISIYCQNGDMDKAHLWFHDMVQRGLSVDVIVYTILMNGYCKAGRLQEACQLFVQMTNL 791

Query: 152 GVAPNAYTYAVLIKG-----LAAAADGNAK------ILGDAQKYLMEMVGKGMRPNAGTY 200
           G+ P+   Y VL+ G     L    +G AK      +  +  K L  M    + P+   Y
Sbjct: 792 GIKPDVIAYTVLLDGHLKETLQQGWEGIAKERRSFLLRANHNKLLSSMKDMQIEPDVPCY 851

Query: 201 TAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           T + +   +A+ + EAR L  +M  KG  PD  A   ALI+
Sbjct: 852 TVLIDGKCKAEYLVEARELFDEMLQKGLTPDAYAYT-ALIN 891



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 41/162 (25%), Positives = 70/162 (43%), Gaps = 8/162 (4%)

Query: 73  NLQEIFHKMRTEGLTNN---AVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           N  + +  M + G+  N      +     K G+T EA+  F + KD G   D V +   +
Sbjct: 465 NAVDHYEAMVSHGIETNCHIVSYLLQCFRKLGMTSEAIAYFLKFKDSGLHLDKVIYNIAM 524

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
           + Y   G   EA+++   M   G+ P+   Y  LI G     +     + +AQ+   EM+
Sbjct: 525 DTYCKNGNMNEAVKLLNEMKYGGLTPDKIHYTCLISGYCLKGE-----MQNAQQVFEEML 579

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              + P+  TY  +   F ++  V E   LL +M  +G  P+
Sbjct: 580 KANIEPDIVTYNILASGFCKSGLVMEVFDLLDRMADQGLEPN 621



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/106 (30%), Positives = 57/106 (53%), Gaps = 5/106 (4%)

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
           +L + +KD    PDV  +T +I+    A    EA  +F  ML  G+ P+AY Y  LI G 
Sbjct: 834 KLLSSMKDMQIEPDVPCYTVLIDGKCKAEYLVEARELFDEMLQKGLTPDAYAYTALINGY 893

Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV 213
            +  +     +  A+  L EM+ KG+ P+  T++ + ++ +R++K+
Sbjct: 894 CSQGE-----ISKAEDLLQEMIDKGIEPDELTFSVLNQSSLRSRKI 934



 Score = 47.8 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 35/59 (59%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
           EA +LF ++  KG  PD  A+TA+I  Y S G+  +A  +   M+  G+ P+  T++VL
Sbjct: 866 EARELFDEMLQKGLTPDAYAYTALINGYCSQGEISKAEDLLQEMIDKGIEPDELTFSVL 924



 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 45/183 (24%), Positives = 78/183 (42%), Gaps = 10/183 (5%)

Query: 63  VVDEEPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQ----LFAQIKDKGH 118
           V     + P  L  + H  RT     +   M D L K  +T   +Q    LF+ I   G 
Sbjct: 244 VSSSNASGPEILPLVDHHRRTCATPCSLSFMVDCLIKACITCYDVQATICLFSGICRLGV 303

Query: 119 MPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKIL 178
           +P V     +++  A  G+ +  L  +  M    + P+ YT+A++ + L       AK +
Sbjct: 304 VPSVWTWNLLLKFIAETGEYEMVLAAYNEMKCFQLTPDVYTFAIVTRSLF-----QAKKV 358

Query: 179 GDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEA 238
            +A +   EM   G++P+A  Y++         K D A  +LQ++  +  VP E      
Sbjct: 359 DEALQVWAEMTEMGVKPDARGYSSFLIGLCDCGKYDLAYVILQEINREK-VPVEAMAYNM 417

Query: 239 LID 241
           ++D
Sbjct: 418 VMD 420



 Score = 43.5 bits (101), Expect = 0.084,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 49/118 (41%), Gaps = 17/118 (14%)

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
           PDV     V  +   A +  EAL+V+  M   GV P+A  Y+  + GL            
Sbjct: 340 PDVYTFAIVTRSLFQAKKVDEALQVWAEMTEMGVKPDARGYSSFLIGLC----------- 388

Query: 180 DAQKY------LMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           D  KY      L E+  + +   A  Y  V +   +  ++DEA  LL+    +G  PD
Sbjct: 389 DCGKYDLAYVILQEINREKVPVEAMAYNMVMDGLCKEMRLDEAEKLLENKARQGSNPD 446


>gi|222616383|gb|EEE52515.1| hypothetical protein OsJ_34721 [Oryza sativa Japonica Group]
          Length = 820

 Score = 77.0 bits (188), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 54/174 (31%), Positives = 88/174 (50%), Gaps = 24/174 (13%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY-- 132
           FH M   GL+ + +    + +   K G   EA QLF Q+ + G  PDV+A+T +++ +  
Sbjct: 632 FHDMVQRGLSVDVIVYTILMNGYCKAGRLQEACQLFVQMTNLGIKPDVIAYTVLLDGHLK 691

Query: 133 ASAGQGKEAL----RVFM------RMLAS----GVAPNAYTYAVLIKGLAAAADGNAKIL 178
            +  QG E +    R F+      ++L+S     + P+   Y VLI G        A+ L
Sbjct: 692 ETLQQGWEGIAKERRSFLLRANHNKLLSSMKDMQIEPDVPCYTVLIDGKC-----KAEYL 746

Query: 179 GDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
            +A++   EM+ KG+ P+A  YTA+   +    ++ +A  LLQ+M  KG  PDE
Sbjct: 747 VEARELFDEMLQKGLTPDAYAYTALINGYCSQGEISKAEDLLQEMIDKGIEPDE 800



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 8/153 (5%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F K +  GL  + V      D   K+G  +EA++L  ++K  G  PD + +T +I  Y  
Sbjct: 387 FLKFKDSGLHLDKVIYNIAMDTYCKNGNMNEAVKLLNEMKYGGLTPDKIHYTCLISGYCL 446

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            G+ + A +VF  ML + + P+  TY +L  G   +      ++ +    L  M  +G+ 
Sbjct: 447 KGEMQNAQQVFEEMLKANIEPDIVTYNILASGFCKSG-----LVMEVFDLLDRMADQGLE 501

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
           PN+ TY      F R   + EA  L   ++ KG
Sbjct: 502 PNSLTYGIAIVGFCRGGNLSEAEVLFNVVEEKG 534



 Score = 64.3 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 12/161 (7%)

Query: 92  KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
           K+     ++G   +A   F  +  +G   DV+ +T ++  Y  AG+ +EA ++F++M   
Sbjct: 614 KLISIYCQNGDMDKAHLWFHDMVQRGLSVDVIVYTILMNGYCKAGRLQEACQLFVQMTNL 673

Query: 152 GVAPNAYTYAVLIKG-----LAAAADGNAK------ILGDAQKYLMEMVGKGMRPNAGTY 200
           G+ P+   Y VL+ G     L    +G AK      +  +  K L  M    + P+   Y
Sbjct: 674 GIKPDVIAYTVLLDGHLKETLQQGWEGIAKERRSFLLRANHNKLLSSMKDMQIEPDVPCY 733

Query: 201 TAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           T + +   +A+ + EAR L  +M  KG  PD  A   ALI+
Sbjct: 734 TVLIDGKCKAEYLVEARELFDEMLQKGLTPDAYAYT-ALIN 773



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 41/162 (25%), Positives = 70/162 (43%), Gaps = 8/162 (4%)

Query: 73  NLQEIFHKMRTEGLTNN---AVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
           N  + +  M + G+  N      +     K G+T EA+  F + KD G   D V +   +
Sbjct: 347 NAVDHYEAMVSHGIETNCHIVSYLLQCFRKLGMTSEAIAYFLKFKDSGLHLDKVIYNIAM 406

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
           + Y   G   EA+++   M   G+ P+   Y  LI G     +     + +AQ+   EM+
Sbjct: 407 DTYCKNGNMNEAVKLLNEMKYGGLTPDKIHYTCLISGYCLKGE-----MQNAQQVFEEML 461

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              + P+  TY  +   F ++  V E   LL +M  +G  P+
Sbjct: 462 KANIEPDIVTYNILASGFCKSGLVMEVFDLLDRMADQGLEPN 503



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/106 (30%), Positives = 57/106 (53%), Gaps = 5/106 (4%)

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
           +L + +KD    PDV  +T +I+    A    EA  +F  ML  G+ P+AY Y  LI G 
Sbjct: 716 KLLSSMKDMQIEPDVPCYTVLIDGKCKAEYLVEARELFDEMLQKGLTPDAYAYTALINGY 775

Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV 213
            +  +     +  A+  L EM+ KG+ P+  T++ + ++ +R++K+
Sbjct: 776 CSQGE-----ISKAEDLLQEMIDKGIEPDELTFSVLNQSSLRSRKI 816



 Score = 47.8 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 35/59 (59%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
           EA +LF ++  KG  PD  A+TA+I  Y S G+  +A  +   M+  G+ P+  T++VL
Sbjct: 748 EARELFDEMLQKGLTPDAYAYTALINGYCSQGEISKAEDLLQEMIDKGIEPDELTFSVL 806



 Score = 47.0 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 45/183 (24%), Positives = 78/183 (42%), Gaps = 10/183 (5%)

Query: 63  VVDEEPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQ----LFAQIKDKGH 118
           V     + P  L  + H  RT     +   M D L K  +T   +Q    LF+ I   G 
Sbjct: 126 VSSSNASGPEILPLVDHHRRTCATPCSLSFMVDCLIKACITCYDVQATICLFSGICRLGV 185

Query: 119 MPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKIL 178
           +P V     +++  A  G+ +  L  +  M    + P+ YT+A++ + L       AK +
Sbjct: 186 VPSVWTWNLLLKFIAETGEYEMVLAAYNEMKCFQLTPDVYTFAIVTRSLF-----QAKKV 240

Query: 179 GDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEA 238
            +A +   EM   G++P+A  Y++         K D A  +LQ++  +  VP E      
Sbjct: 241 DEALQVWAEMTEMGVKPDARGYSSFLIGLCDCGKYDLAYVILQEINREK-VPVEAMAYNM 299

Query: 239 LID 241
           ++D
Sbjct: 300 VMD 302



 Score = 43.5 bits (101), Expect = 0.084,   Method: Composition-based stats.
 Identities = 33/118 (27%), Positives = 49/118 (41%), Gaps = 17/118 (14%)

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
           PDV     V  +   A +  EAL+V+  M   GV P+A  Y+  + GL            
Sbjct: 222 PDVYTFAIVTRSLFQAKKVDEALQVWAEMTEMGVKPDARGYSSFLIGLC----------- 270

Query: 180 DAQKY------LMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           D  KY      L E+  + +   A  Y  V +   +  ++DEA  LL+    +G  PD
Sbjct: 271 DCGKYDLAYVILQEINREKVPVEAMAYNMVMDGLCKEMRLDEAEKLLENKARQGSNPD 328


>gi|410109873|gb|AFV61016.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           citrodora]
          Length = 380

 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 108/237 (45%), Gaps = 15/237 (6%)

Query: 2   AATAILRWLLHSPSPKRS-LRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPF 60
           +A+A+   +L +   +RS + + +  + A L+      + +  +  +  + K   P D  
Sbjct: 45  SASAVFAAILETKGTQRSDIYVFSGLITAYLESGFLRDAIECYR--LTREHKFWVPLDTC 102

Query: 61  KKVVDEEPTDPRNLQEI--FHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIK 114
           +KV+ E     +  + +  F+K   E     ++  F+ L     K+G    A  +   I 
Sbjct: 103 RKVL-EHLMKLKYFKLVWGFYKEILECGYPASLYFFNILMQRFCKEGDIRVAQLVLNAIT 161

Query: 115 DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174
             G  P VV+   +I  Y   G   E  R+   M ASGV P+ YTY+VLI GL   +   
Sbjct: 162 KWGLRPSVVSFNTLINGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESK-- 219

Query: 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              + DA +   EM+ KGM PN  T+T + +   +  +VD A  + +QM ++   PD
Sbjct: 220 ---MDDANELFDEMLDKGMVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 273



 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/158 (26%), Positives = 78/158 (49%), Gaps = 6/158 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K+    +A +LF ++ DKG +P+ V  T +I+ +   G+   A+ ++ +ML+  
Sbjct: 210 LINGLCKESKMDDANELFDEMLDKGMVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQS 269

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           ++P+  TY  LI GL    +     L  A   + EM  +G++P+  TYT + +   +   
Sbjct: 270 LSPDLITYNTLIYGLCKKGE-----LKQAHDLIDEMSMEGLKPDKITYTTLIDGCCKEGD 324

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGV 250
           ++ A    ++M  +    D+  V  ALI    Q  R V
Sbjct: 325 METAFEHQKRMIQENIRLDD-VVYTALISGLCQEGRSV 361



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 8/126 (6%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           EI+ +M ++ L+ + +    +   L K G   +A  L  ++  +G  PD + +T +I+  
Sbjct: 260 EIYKQMLSQSLSPDLITYNTLIYGLCKKGELKQAHDLIDEMSMEGLKPDKITYTTLIDGC 319

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G  + A     RM+   +  +   Y  LI GL    +G +    DA+K L EM+  G
Sbjct: 320 CKEGDMETAFEHQKRMIQENIRLDDVVYTALISGL--CQEGRSV---DAEKMLREMLSVG 374

Query: 193 MRPNAG 198
           ++PN G
Sbjct: 375 LKPNTG 380


>gi|297819626|ref|XP_002877696.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297323534|gb|EFH53955.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1188

 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 48/173 (27%), Positives = 84/173 (48%), Gaps = 10/173 (5%)

Query: 72  RNLQEIFHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           ++  ++F  MR +   N  ++ F +L     ++G   EA ++  Q+K+ G  PD+V  T 
Sbjct: 222 KDASKVFEDMREKIPPN--LRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTN 279

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           ++  YA AG+  +A  +   M   G  PNA  Y VLI+ L        K + +A +  +E
Sbjct: 280 LLSGYAHAGKMADAYDLLNDMRKRGYEPNANCYTVLIQALCRT----EKRMDEAMRVFVE 335

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
           M   G   +  TYTA+   F +   +D+   +L  M+ KG +P +    + L+
Sbjct: 336 MERYGCEADIVTYTALISGFCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQILV 388



 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 92/199 (46%), Gaps = 19/199 (9%)

Query: 43  TKKYVNTKSKLPPPYDPFKKVVDEEPTDPRNLQ--EIFHKMRTEGLTNNAVKMFDALSKD 100
           +K + + + K+PP    F  ++     + + ++  E+  +M+  GL  + V   + LS  
Sbjct: 225 SKVFEDMREKIPPNLRYFTSLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLS-- 282

Query: 101 GLTH-----EALQLFAQIKDKGHMPDVVAHTAVIEAYA-SAGQGKEALRVFMRMLASGVA 154
           G  H     +A  L   ++ +G+ P+   +T +I+A   +  +  EA+RVF+ M   G  
Sbjct: 283 GYAHAGKMADAYDLLNDMRKRGYEPNANCYTVLIQALCRTEKRMDEAMRVFVEMERYGCE 342

Query: 155 PNAYTYAVLIKGLA--AAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            +  TY  LI G       D    +L D +K       KG+ P+  TY  +  A  + ++
Sbjct: 343 ADIVTYTALISGFCKWGMIDKGYSVLDDMRK-------KGVMPSQVTYMQILVAHEKKEQ 395

Query: 213 VDEARGLLQQMKAKGFVPD 231
            +E   L+++MK  G  PD
Sbjct: 396 FEECLELIEKMKQIGCHPD 414



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 75/155 (48%), Gaps = 10/155 (6%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +   MR +G+  + V   ++  A  K     E L+L  ++K  G  PD++ +  VI    
Sbjct: 367 VLDDMRKKGVMPSQVTYMQILVAHEKKEQFEECLELIEKMKQIGCHPDLLIYNVVIRLAC 426

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
           +  + KEA+R++  M A+G++P A  + ++I G  +        L +A  +  EMV +G+
Sbjct: 427 NFREVKEAVRLWNEMEANGLSPGADMFVIMINGFTSQG-----YLIEACSHFKEMVSRGI 481

Query: 194 --RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK 226
              P  GT  ++    +R  K++ A+ +   +  K
Sbjct: 482 FSAPQYGTLKSLLNTLLRDDKLEMAKDVWSCISNK 516



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/131 (22%), Positives = 61/131 (46%), Gaps = 6/131 (4%)

Query: 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
            +  +A+++  ++   G  PD      +++A    G  K+A +VF  M    + PN   +
Sbjct: 184 NMVKKAVEVLDEMPKYGFEPDEYVFGCLLDALCKNGSVKDASKVFEDM-REKIPPNLRYF 242

Query: 161 AVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
             L+ G           L +A++ L++M   G+ P+   +T +   +  A K+ +A  LL
Sbjct: 243 TSLLYGWCREGK-----LMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLL 297

Query: 221 QQMKAKGFVPD 231
             M+ +G+ P+
Sbjct: 298 NDMRKRGYEPN 308


>gi|255660884|gb|ACU25611.1| pentatricopeptide repeat-containing protein [Verbena litoralis]
          Length = 484

 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 79/168 (47%), Gaps = 12/168 (7%)

Query: 78  FHKMRTEGL-----TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           F+KM +EG+     T N   M       G    A + F  +K +   PDVV +  +I  Y
Sbjct: 138 FNKMLSEGIEPTRHTFNV--MIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGY 195

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               + +EA + F+ M    + P   TY  LIKG  +        + DA + + EM G G
Sbjct: 196 YRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQ-----VDDALRLVEEMKGFG 250

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
           ++PNA TY+ +      A+ + EAR +L++M  K   P + ++   LI
Sbjct: 251 IKPNAITYSTLLPGLCNAEXMSEARVILKEMMDKYLAPTDNSIFMRLI 298



 Score = 69.7 bits (169), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 82/171 (47%), Gaps = 30/171 (17%)

Query: 91  VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           V M D+  K+ +  E++++F ++++ G    + ++ A+ +     G+   A R F +ML+
Sbjct: 84  VMMIDSYGKEXIVQESVKMFQKMEELGVERTIKSYNALFKVILRRGRYMMAKRYFNKMLS 143

Query: 151 SGVAPNAYTYAVLIKGLAAAA----------------------------DGNAKI--LGD 180
            G+ P  +T+ V+I G   +                             +G  ++  + +
Sbjct: 144 EGIEPTRHTFNVMIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKMEE 203

Query: 181 AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           A+KY +EM G+ + P   TYT + + +V   +VD+A  L+++MK  G  P+
Sbjct: 204 AEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPN 254



 Score = 63.5 bits (153), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 87/181 (48%), Gaps = 13/181 (7%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
            F  M++  ++ + V    M +   +     EA + F ++K +   P VV +T +I+ Y 
Sbjct: 172 FFEDMKSREISPDVVTYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYV 231

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
           S  Q  +ALR+   M   G+ PNA TY+ L+ GL      NA+ + +A+  L EM+ K +
Sbjct: 232 SVDQVDDALRLVEEMKGFGIKPNAITYSTLLPGLC-----NAEXMSEARVILKEMMDKYL 286

Query: 194 RP-NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID---KRGQGFRG 249
            P +   +  +  +  ++  +D A  +L+ M  +  VP E      LI+   K GQ  + 
Sbjct: 287 APTDNSIFMRLISSHCKSGNLDAAADVLKAM-IRLSVPTEAGHYGXLIENFCKXGQYDKA 345

Query: 250 V 250
           V
Sbjct: 346 V 346


>gi|357476703|ref|XP_003608637.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509692|gb|AES90834.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 715

 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 84/166 (50%), Gaps = 10/166 (6%)

Query: 74  LQEIFHKMRTEGLTNNAVKMFDALS---KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           ++E+ H+M   G+  + +     +S   K  L  +A+  F ++   G MPD V  +A+++
Sbjct: 209 IEELAHQMIDGGVELDNITYSTIISCAKKCNLFDKAVYWFERMYKTGLMPDEVTFSAILD 268

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKY-LMEMV 189
            YA  G+ +E + +F R  A+G  P+  T++VL K    A D       D  +Y L EM 
Sbjct: 269 VYARLGKVEEVVNLFERGRATGWKPDPITFSVLGKMFGEAGD------YDGIRYVLQEMK 322

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAV 235
             G++PN   Y  + EA  +A K   AR L ++M   G  P+EK +
Sbjct: 323 SLGVQPNLVVYNTLLEAMGKAGKPGFARSLFEEMIDSGIAPNEKTL 368



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 78/165 (47%), Gaps = 9/165 (5%)

Query: 67  EPTDPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVV 123
           E  D   ++ +  +M++ G+  N V    + +A+ K G    A  LF ++ D G  P+  
Sbjct: 307 EAGDYDGIRYVLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGFARSLFEEMIDSGIAPNEK 366

Query: 124 AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQK 183
             TAVI+ Y  A   K+AL ++ RM  +G   +   Y  L+   A     +  ++ +A+ 
Sbjct: 367 TLTAVIKIYGKARWSKDALELWKRMKENGWPMDFILYNTLLNMCA-----DVGLIEEAET 421

Query: 184 YLMEM-VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
              +M   +  +P++ +YTA+   +     VD+A  L ++M   G
Sbjct: 422 LFRDMKQSEHCKPDSWSYTAMLNIYGSEGAVDKAMKLFEEMSKFG 466



 Score = 47.4 bits (111), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 9/125 (7%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHM-PDVVAHTAVIEA 131
           E++ +M+  G   + +    + +  +  GL  EA  LF  +K   H  PD  ++TA++  
Sbjct: 386 ELWKRMKENGWPMDFILYNTLLNMCADVGLIEEAETLFRDMKQSEHCKPDSWSYTAMLNI 445

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y S G   +A+++F  M   G+  N      LI+ L     G A  + D  K     V +
Sbjct: 446 YGSEGAVDKAMKLFEEMSKFGIELNVMGCTCLIQCL-----GKAMEIDDLVKVFDISVER 500

Query: 192 GMRPN 196
           G++P+
Sbjct: 501 GVKPD 505



 Score = 46.6 bits (109), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 10/134 (7%)

Query: 92  KMF-DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           KMF +A   DG+ +    +  ++K  G  P++V +  ++EA   AG+   A  +F  M+ 
Sbjct: 303 KMFGEAGDYDGIRY----VLQEMKSLGVQPNLVVYNTLLEAMGKAGKPGFARSLFEEMID 358

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
           SG+APN  T   +IK       G A+   DA +    M   G   +   Y  +       
Sbjct: 359 SGIAPNEKTLTAVIK-----IYGKARWSKDALELWKRMKENGWPMDFILYNTLLNMCADV 413

Query: 211 QKVDEARGLLQQMK 224
             ++EA  L + MK
Sbjct: 414 GLIEEAETLFRDMK 427


>gi|356528166|ref|XP_003532676.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Glycine max]
          Length = 852

 Score = 77.0 bits (188), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 43/156 (27%), Positives = 80/156 (51%), Gaps = 8/156 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +F +M+ +GL  + V    + D   K G+   A+ +F ++KD G  PDV+ + ++I  
Sbjct: 271 RSLFEEMKAKGLRPDIVTYNSLIDGYGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINC 330

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +    +  +A      M   G+ PN  TY+ LI     A      +L +A K+ ++M+  
Sbjct: 331 FCKFERIPQAFEYLHGMKQRGLQPNVVTYSTLIDAFCKAG-----MLLEANKFFVDMIRV 385

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
           G++PN  TYT++ +A  +   ++EA  L  +M+  G
Sbjct: 386 GLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQAG 421



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E  H M+  GL  N V    + DA  K G+  EA + F  +   G  P+   +T++I+A 
Sbjct: 342 EYLHGMKQRGLQPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDAN 401

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G   EA ++   M  +GV  N  TY  L+ GL    DG  +   +A++    ++  G
Sbjct: 402 CKIGDLNEAFKLESEMQQAGVNLNIVTYTALLDGLCE--DGRMR---EAEELFGALLKAG 456

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              N   YT++F  +++A+ +++A  +L++M  K   PD
Sbjct: 457 WTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKNLKPD 495



 Score = 71.6 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/140 (31%), Positives = 69/140 (49%), Gaps = 5/140 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K GL  +A++ F  +   G  P+++ +TA+I+        +EA  +F  ML  G
Sbjct: 572 LIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKNLFNEMLDKG 631

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           ++P+   Y  LI G      GN    G+A      MV  GM  +   YT++   F R  +
Sbjct: 632 ISPDKLVYTSLIDG--NMKHGNP---GEALSLRNRMVEIGMELDLCAYTSLIWGFSRYGQ 686

Query: 213 VDEARGLLQQMKAKGFVPDE 232
           V  A+ LL +M  KG +PD+
Sbjct: 687 VQLAKSLLDEMLRKGIIPDQ 706



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 8/158 (5%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F  M   GL+ +      +   L+++G    A  LF ++K KG  PD+V + ++I+ Y  
Sbjct: 239 FKDMVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGYGK 298

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            G    A+ VF  M  +G  P+  TY  LI           + +  A +YL  M  +G++
Sbjct: 299 VGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFC-----KFERIPQAFEYLHGMKQRGLQ 353

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           PN  TY+ + +AF +A  + EA      M   G  P+E
Sbjct: 354 PNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNE 391



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 41/146 (28%), Positives = 69/146 (47%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L +     +++ +  ++ D G   +   +T +I+AY   G+  EA+ +   M   G+  
Sbjct: 505 GLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKI 564

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
              TY VLI GL         ++  A +Y   M   G++PN   YTA+ +   +   ++E
Sbjct: 565 TVVTYGVLIDGLCKIG-----LVQQAVRYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEE 619

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A+ L  +M  KG  PD K V  +LID
Sbjct: 620 AKNLFNEMLDKGISPD-KLVYTSLID 644



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/162 (27%), Positives = 77/162 (47%), Gaps = 12/162 (7%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M+  G   + +    + +   K     +A +    +K +G  P+VV ++ +I+A+ 
Sbjct: 308 VFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYSTLIDAFC 367

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKI--LGDAQKYLMEMVGK 191
            AG   EA + F+ M+  G+ PN +TY  LI       D N KI  L +A K   EM   
Sbjct: 368 KAGMLLEANKFFVDMIRVGLQPNEFTYTSLI-------DANCKIGDLNEAFKLESEMQQA 420

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK 233
           G+  N  TYTA+ +      ++ EA  L   +   G+  +++
Sbjct: 421 GVNLNIVTYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQ 462



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/134 (30%), Positives = 58/134 (43%), Gaps = 8/134 (5%)

Query: 98  SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA 157
           SK GL   AL  F  +   G  P V  +  VI   A  G  + A  +F  M A G+ P+ 
Sbjct: 230 SKGGL---ALSFFKDMVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDI 286

Query: 158 YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
            TY  LI G      G   +L  A     EM   G  P+  TY ++   F + +++ +A 
Sbjct: 287 VTYNSLIDGY-----GKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAF 341

Query: 218 GLLQQMKAKGFVPD 231
             L  MK +G  P+
Sbjct: 342 EYLHGMKQRGLQPN 355



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 8/155 (5%)

Query: 78  FHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F  M   GL  N +    + D L K+    EA  LF ++ DKG  PD + +T++I+    
Sbjct: 589 FDHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLIDGNMK 648

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            G   EAL +  RM+  G+  +   Y  LI G +    G  ++   A+  L EM+ KG+ 
Sbjct: 649 HGNPGEALSLRNRMVEIGMELDLCAYTSLIWGFSRY--GQVQL---AKSLLDEMLRKGII 703

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFV 229
           P+      +   +     ++EA  L   M  +G +
Sbjct: 704 PDQVLCICLLRKYYELGDINEALALHDDMARRGLI 738



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 41/169 (24%), Positives = 76/169 (44%), Gaps = 9/169 (5%)

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           + F  M   GL  N      + DA  K G  +EA +L ++++  G   ++V +TA+++  
Sbjct: 377 KFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQAGVNLNIVTYTALLDGL 436

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+ +EA  +F  +L +G   N   Y  L  G        AK++  A   L EM  K 
Sbjct: 437 CEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYI-----KAKMMEKAMDILEEMNKKN 491

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           ++P+   Y        R  +++++  ++++M   G   +   +   LID
Sbjct: 492 LKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANS-YIYTTLID 539



 Score = 49.7 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 6/110 (5%)

Query: 136 GQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP 195
           G  +EA + F +M    V P   +   L+  L+ ++ G     G A  +  +MV  G+ P
Sbjct: 195 GMLEEARQCFWKMNKFRVLPKVRSCNELLHRLSKSSKG-----GLALSFFKDMVVAGLSP 249

Query: 196 NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
           +  TY  V     R   ++ AR L ++MKAKG  PD      +LID  G+
Sbjct: 250 SVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPD-IVTYNSLIDGYGK 298


>gi|326488077|dbj|BAJ89877.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 395

 Score = 77.0 bits (188), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 78/166 (46%), Gaps = 10/166 (6%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVKMF----DALSKDGLTHEALQLFAQIKDKGHMPDVVAH 125
           D   + E+F  M  +G+ N  +K +    D L  DG  ++ L  F Q+ D G  PD++ +
Sbjct: 224 DTEKVCELFESMVEQGM-NPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITY 282

Query: 126 TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185
             +I     +G+ +EAL ++  M   G+APN YTY  LI  L  A         +A K  
Sbjct: 283 NLLIHGLGKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKA-----AEAGKMY 337

Query: 186 MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            E++ KG +PN  TY A+   +  +   + A     +M   G  P+
Sbjct: 338 EELLAKGWKPNVFTYNALIRGYSVSGSPENAFAAYGRMIVGGCRPN 383



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/131 (29%), Positives = 69/131 (52%), Gaps = 5/131 (3%)

Query: 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
           G T +  +LF  + ++G  PD+ ++T VI+   + G+  + L  F ++   G+ P+  TY
Sbjct: 223 GDTEKVCELFESMVEQGMNPDIKSYTVVIDTLCADGRLNDGLSYFKQLTDMGLEPDLITY 282

Query: 161 AVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
            +LI GL     G +  L +A     +M  KG+ PN  TY ++     +A K  EA  + 
Sbjct: 283 NLLIHGL-----GKSGRLEEALSLYNDMEKKGIAPNLYTYNSLILYLGKAGKAAEAGKMY 337

Query: 221 QQMKAKGFVPD 231
           +++ AKG+ P+
Sbjct: 338 EELLAKGWKPN 348



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 81/175 (46%), Gaps = 10/175 (5%)

Query: 63  VVDEEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM 119
           +VDE+  D    +E+F +M+  G   +      + DA+ K     + L++  ++ +KG+ 
Sbjct: 79  LVDEDLIDIA--EELFSEMKRLGCDPDEFTYHLILDAMGKSMRIEDMLKIQEEMHNKGYK 136

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
              V +  +I     +    EA+ ++ ++++ G +P   TY  L+ GL    DGN +   
Sbjct: 137 STYVTYNTIISGLVKSKMLDEAINLYYQLMSEGFSPTPCTYGPLLDGL--LKDGNIE--- 191

Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
           DA+    EM+  G  PN   Y  +   +  A   ++   L + M  +G  PD K+
Sbjct: 192 DAEALFDEMLECGCEPNCAIYNILLNGYRIAGDTEKVCELFESMVEQGMNPDIKS 246



 Score = 45.8 bits (107), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 7/92 (7%)

Query: 77  IFHKMRTEGL-----TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +++ M  +G+     T N++ ++  L K G   EA +++ ++  KG  P+V  + A+I  
Sbjct: 301 LYNDMEKKGIAPNLYTYNSLILY--LGKAGKAAEAGKMYEELLAKGWKPNVFTYNALIRG 358

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
           Y+ +G  + A   + RM+  G  PN+ TY  L
Sbjct: 359 YSVSGSPENAFAAYGRMIVGGCRPNSSTYMQL 390


>gi|449440241|ref|XP_004137893.1| PREDICTED: pentatricopeptide repeat-containing protein At2g38420,
           mitochondrial-like [Cucumis sativus]
 gi|449483740|ref|XP_004156675.1| PREDICTED: pentatricopeptide repeat-containing protein At2g38420,
           mitochondrial-like [Cucumis sativus]
          Length = 491

 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 81/168 (48%), Gaps = 15/168 (8%)

Query: 80  KMRTEGLT------NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +MR +G        +N +K F      G+  +A+ L  ++K  G  PD+V +T V+    
Sbjct: 241 EMRQKGFCPAVVDYSNVIKFF---VTRGMGSDAVDLLNKMKADGFKPDIVCYTMVLNGVI 297

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
           + G  K A  +F  +L  G+ P+ YTY V I GL    D  A +     + +  M   G 
Sbjct: 298 ADGDYKMADELFDELLLFGLVPDIYTYNVYIHGLCKQGDSVAGL-----QMIPHMEALGC 352

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           +PN  TY  + ++  +  ++DEAR L  +M+ KG   + +  +  +ID
Sbjct: 353 QPNVITYNVILKSLCKTGELDEARKLRSKMQLKGLAENLRTFR-IMID 399



 Score = 60.5 bits (145), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/179 (24%), Positives = 80/179 (44%), Gaps = 8/179 (4%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D +   E+F ++   GL  +          L K G +   LQ+   ++  G  P+V+ + 
Sbjct: 301 DYKMADELFDELLLFGLVPDIYTYNVYIHGLCKQGDSVAGLQMIPHMEALGCQPNVITYN 360

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
            ++++    G+  EA ++  +M   G+A N  T+ ++I GL      N +++ +A   L 
Sbjct: 361 VILKSLCKTGELDEARKLRSKMQLKGLAENLRTFRIMIDGLFH----NGEVI-EACVLLE 415

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
           EM+G    P   T++ +     +   V +A  LL  M  K F P  KA +  L+    +
Sbjct: 416 EMLGSRFPPQISTFSEILSWLCKRHMVGKAVELLALMVGKNFSPGPKAWEILLLSSESE 474


>gi|302780869|ref|XP_002972209.1| hypothetical protein SELMODRAFT_96926 [Selaginella moellendorffii]
 gi|300160508|gb|EFJ27126.1| hypothetical protein SELMODRAFT_96926 [Selaginella moellendorffii]
          Length = 363

 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 77/154 (50%), Gaps = 6/154 (3%)

Query: 88  NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMR 147
           N    + D L K G   E  +LF ++K K   PDV+ ++ +I  +    +   A  +F  
Sbjct: 46  NTYNTLIDGLCKTGRVPEVNRLFGEMKAKFCNPDVITYSCLIGGFCKLDRINMACTLFDD 105

Query: 148 MLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAF 207
           ML     P+  T+  L++G       NA ++ DA++ L E+V     P+  TYT++ + F
Sbjct: 106 MLKQAALPDVVTFPTLVEGYC-----NAGLVDDAERLLEEIVASDCSPDVYTYTSLVDGF 160

Query: 208 VRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
            + +++ EA  +L++M AKG       +  ALID
Sbjct: 161 CKVKRMVEAHRVLKRM-AKGECQPNVVIYTALID 193



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 62/126 (49%), Gaps = 5/126 (3%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A  LF  +  +  +PDVV    ++E Y +AG   +A R+   ++AS  +P+ YTY  L+ 
Sbjct: 99  ACTLFDDMLKQAALPDVVTFPTLVEGYCNAGLVDDAERLLEEIVASDCSPDVYTYTSLVD 158

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G         K + +A + L  M     +PN   YTA+ +AF  A K   A  LL++M  
Sbjct: 159 GFC-----KVKRMVEAHRVLKRMAKGECQPNVVIYTALIDAFCSAGKPTVAYKLLEEMVG 213

Query: 226 KGFVPD 231
            G  P+
Sbjct: 214 NGVQPN 219



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 5/132 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +     GL  +A +L  +I      PDV  +T++++ +    +  EA RV  RM    
Sbjct: 121 LVEGYCNAGLVDDAERLLEEIVASDCSPDVYTYTSLVDGFCKVKRMVEAHRVLKRMAKGE 180

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN   Y  LI    +A          A K L EMVG G++PNA TY ++   F     
Sbjct: 181 CQPNVVIYTALIDAFCSAGKPTV-----AYKLLEEMVGNGVQPNAITYRSLIGGFCGTGD 235

Query: 213 VDEARGLLQQMK 224
           ++EA  +L++++
Sbjct: 236 LEEAHKMLERLE 247



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 9/154 (5%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   K     EA ++  ++      P+VV +TA+I+A+ SAG+   A ++   M+ +G
Sbjct: 156 LVDGFCKVKRMVEAHRVLKRMAKGECQPNVVIYTALIDAFCSAGKPTVAYKLLEEMVGNG 215

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV-GKGMRPNAGTYTAVFEAFVRAQ 211
           V PNA TY  LI G     D     L +A K L  +   +  + +   Y  + +   R  
Sbjct: 216 VQPNAITYRSLIGGFCGTGD-----LEEAHKMLERLERNENCKADMFAYRVMMDGLCRTG 270

Query: 212 KVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
           ++  A  LL+ +K  G  P    +  ALI  RG+
Sbjct: 271 RMSAALELLEAIKQSG-TPPRHDIYVALI--RGE 301


>gi|358346916|ref|XP_003637510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503445|gb|AES84648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 718

 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 72/147 (48%), Gaps = 6/147 (4%)

Query: 86  LTNNAVK-MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRV 144
           LTN +VK + +   K+G   EAL+   ++ ++G  PD V   +++  +   G   +AL +
Sbjct: 226 LTNVSVKVLVNGFCKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDI 285

Query: 145 FMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVF 204
              M+  G  P+ YTY  LI G+    +    I     + L +M+ +   PN  TY  + 
Sbjct: 286 VDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAI-----EILQQMILRECSPNTVTYNTLI 340

Query: 205 EAFVRAQKVDEARGLLQQMKAKGFVPD 231
            A  +  +++ A  L + + +KG +PD
Sbjct: 341 SALCKENEIEAATDLARILVSKGLLPD 367



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 69/126 (54%), Gaps = 5/126 (3%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A+++F ++K+KG  PD   ++ +I++     + KEAL +   M +SG A NA  Y  LI 
Sbjct: 387 AMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLID 446

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           GL       ++ + DA++   +M   G+  ++ TY  + +   + ++V+EA  L+ QM  
Sbjct: 447 GLC-----KSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIM 501

Query: 226 KGFVPD 231
           +G  PD
Sbjct: 502 EGLKPD 507



 Score = 67.4 bits (163), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 81/159 (50%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F +M+ +G   +      + D+L  +    EAL L  +++  G   + V +  +I+  
Sbjct: 389 EMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGL 448

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             + + ++A  +F +M   GV+ ++ TY  LI GL        K + +A + + +M+ +G
Sbjct: 449 CKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLC-----KNKRVEEASQLMDQMIMEG 503

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           ++P+  TY ++   F R   +++A  ++Q M + G  PD
Sbjct: 504 LKPDKFTYNSLLTYFCRVGDIEKAGDIVQTMASNGCEPD 542



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 86/183 (46%), Gaps = 20/183 (10%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +EIF +M   G++ ++V    + D L K+    EA QL  Q+  +G  PD   + +++  
Sbjct: 458 EEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLLTY 517

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAA--ADGNAKILGDAQKYLMEMV 189
           +   G  ++A  +   M ++G  P+ +TY  LI GL  A   D  +K+L   Q     M 
Sbjct: 518 FCRVGDIEKAGDIVQTMASNGCEPDIFTYGTLIGGLCRAGRVDVASKLLRSVQ-----MK 572

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRG 249
           G  + P+A  Y  V +A    ++  E   L ++M  K   PD  A+   ++      FRG
Sbjct: 573 GIVLTPHA--YNPVIQALFMRKRTKEGMRLFREMMEKSDPPD--ALTHKIV------FRG 622

Query: 250 VIN 252
           + N
Sbjct: 623 LCN 625



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 71/169 (42%), Gaps = 9/169 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           EI  +M     + N V    +  AL K+     A  L   +  KG +PDV     +I+  
Sbjct: 319 EILQQMILRECSPNTVTYNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGL 378

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             +     A+ +F  M   G  P+ +TY++LI  L        + L +A   L EM   G
Sbjct: 379 CLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCY-----ERRLKEALMLLKEMESSG 433

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
              NA  Y  + +   +++++++A  +  QM+  G V         LID
Sbjct: 434 CARNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLG-VSRSSVTYNTLID 481



 Score = 50.4 bits (119), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 63/139 (45%), Gaps = 5/139 (3%)

Query: 94  FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGV 153
            +AL +D        L +++ ++G + DV     +I+A   A Q + A+ +   M   G+
Sbjct: 130 LNALVEDNKLKLVEMLHSKMVNEGIVLDVSTFNVLIKALCKAHQLRPAILMLEEMANHGL 189

Query: 154 APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV 213
            P+  T+  L++G     D N      A K   +M+G G      +   +   F +  +V
Sbjct: 190 KPDEITFTTLMQGFIEEGDLNG-----ALKMKKQMLGYGCLLTNVSVKVLVNGFCKEGRV 244

Query: 214 DEARGLLQQMKAKGFVPDE 232
           +EA   + ++  +GF PD+
Sbjct: 245 EEALRFVLEVSEEGFSPDQ 263



 Score = 45.8 bits (107), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 41/189 (21%), Positives = 77/189 (40%), Gaps = 8/189 (4%)

Query: 49  TKSKLPPPYDPFKKVVDEEPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQ 108
           T   LPP      ++      D  ++  +  ++++ G   NA      +      HE   
Sbjct: 51  THHPLPPNETLLLQLTQSSSFD--SITTLLKQLKSSGSIPNATTFATLIQSFTNFHEIEN 108

Query: 109 LFAQIKDK-GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
           L   ++++ G  PD   +   + A     + K    +  +M+  G+  +  T+ VLIK L
Sbjct: 109 LLKILENELGFKPDTNFYNIALNALVEDNKLKLVEMLHSKMVNEGIVLDVSTFNVLIKAL 168

Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
             A      IL      L EM   G++P+  T+T + + F+    ++ A  + +QM   G
Sbjct: 169 CKAHQLRPAIL-----MLEEMANHGLKPDEITFTTLMQGFIEEGDLNGALKMKKQMLGYG 223

Query: 228 FVPDEKAVK 236
            +    +VK
Sbjct: 224 CLLTNVSVK 232



 Score = 39.3 bits (90), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 26/117 (22%), Positives = 54/117 (46%), Gaps = 12/117 (10%)

Query: 103 THEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQG-KEALRVFMRMLASGVAPNAYTYA 161
           T E ++LF ++ +K   PD + H  V     + G   +EA+   + ML  G+ P   ++ 
Sbjct: 594 TKEGMRLFREMMEKSDPPDALTHKIVFRGLCNGGGPIQEAIDFTVEMLEKGILPEFPSFG 653

Query: 162 VLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGT--YTAVFEAFVRAQKVDEA 216
            L +GL + +          +  L+E++   M     +   T++   F++ +K ++A
Sbjct: 654 FLAEGLCSLS---------MEDTLIELINMVMEKAQMSERETSMIRGFLKIRKFNDA 701


>gi|302816356|ref|XP_002989857.1| hypothetical protein SELMODRAFT_45144 [Selaginella moellendorffii]
 gi|300142423|gb|EFJ09124.1| hypothetical protein SELMODRAFT_45144 [Selaginella moellendorffii]
          Length = 394

 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 71/137 (51%), Gaps = 6/137 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG-VA 154
           +L KD    EA +L  Q  ++  MP V   T +++    + + +EA  +  RML +G  A
Sbjct: 231 SLCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLCKSRRVEEACVILERMLEAGDRA 290

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
           P+  TY+ +I GL       A  L DA   L +M   G  P+  TYTA+ +AF +  ++D
Sbjct: 291 PSVVTYSAVIDGLC-----KADRLDDAYIVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLD 345

Query: 215 EARGLLQQMKAKGFVPD 231
           EAR L Q+M  +G   D
Sbjct: 346 EARELFQRMHERGCASD 362



 Score = 67.8 bits (164), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/168 (27%), Positives = 76/168 (45%), Gaps = 9/168 (5%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +M+  G+T   V    +   L +   T++ALQ+F Q+ D    PD   +T VI    
Sbjct: 1   LLGEMKAAGITPTIVTFGSLIRKLCELNFTNKALQIFHQMIDMKVKPDAFLYTVVIGHLC 60

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
              +   A   F +M+ SG  P+  TY VL+  L  A            +   EM+ KG 
Sbjct: 61  KINKLDLAASYFEQMVQSGCLPDKVTYTVLVHSLFKACKWE-----QGHQIFEEMLSKGH 115

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
            P   TY  V   + +A ++D+A  L++++K  G  P   ++   LID
Sbjct: 116 SPELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSP-SGSLYSTLID 162



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 75/170 (44%), Gaps = 33/170 (19%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K     EA +LF      G + DV+ +T+ I     AG+  EA  V ++M+ +G
Sbjct: 160 LIDGLCKHDRHEEARELFEMAA--GDVQDVIVYTSFISGLCKAGKLDEAKAVHVKMIEAG 217

Query: 153 VAPNAYTYAVLIKGLA----------------------------AAADGNAKI--LGDAQ 182
            AP+  +Y V+I  L                                DG  K   + +A 
Sbjct: 218 CAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLCKSRRVEEAC 277

Query: 183 KYLMEMVGKGMR-PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             L  M+  G R P+  TY+AV +   +A ++D+A  +LQ+M+  G VPD
Sbjct: 278 VILERMLEAGDRAPSVVTYSAVIDGLCKADRLDDAYIVLQKMRRAGCVPD 327



 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 7/124 (5%)

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
           Q+F ++  KGH P++V +  V+  Y  AG+  +AL +  R+  +G +P+   Y+ LI GL
Sbjct: 105 QIFEEMLSKGHSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGL 164

Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
               D +     +  + L EM   G   +   YT+      +A K+DEA+ +  +M   G
Sbjct: 165 -CKHDRH-----EEARELFEMAA-GDVQDVIVYTSFISGLCKAGKLDEAKAVHVKMIEAG 217

Query: 228 FVPD 231
             PD
Sbjct: 218 CAPD 221



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 16/147 (10%)

Query: 56  PYDPFKKVVDEEPTDPRNLQE---IFHKMRTEG------LTNNAVKMFDALSKDGLTHEA 106
           P  P   V+ +     R ++E   I  +M   G      +T +AV   D L K     +A
Sbjct: 255 PGVPVCTVLVDGLCKSRRVEEACVILERMLEAGDRAPSVVTYSAV--IDGLCKADRLDDA 312

Query: 107 LQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKG 166
             +  +++  G +PDVV +TA+I+A+   G+  EA  +F RM   G A +   Y +LI+G
Sbjct: 313 YIVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCASDVVAYNILIRG 372

Query: 167 LAAAADGNAKILGDAQKYLMEMVGKGM 193
              AA      + +A   + EM G+G+
Sbjct: 373 YCRAAK-----VDEAIAMIEEMAGRGI 394



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 70/159 (44%), Gaps = 10/159 (6%)

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +IFH+M    +  +A     +   L K      A   F Q+   G +PD V +T ++ + 
Sbjct: 35  QIFHQMIDMKVKPDAFLYTVVIGHLCKINKLDLAASYFEQMVQSGCLPDKVTYTVLVHSL 94

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             A + ++  ++F  ML+ G +P   TYA ++ G   A       +  A   +  + G G
Sbjct: 95  FKACKWEQGHQIFEEMLSKGHSPELVTYATVVNGYCKAGR-----IDQALSLMRRLKGTG 149

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             P+   Y+ + +   +  + +EAR L +   A G V D
Sbjct: 150 RSPSGSLYSTLIDGLCKHDRHEEARELFEM--AAGDVQD 186


>gi|42562903|ref|NP_176512.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|114050643|gb|ABI49471.1| At1g63230 [Arabidopsis thaliana]
 gi|332195952|gb|AEE34073.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 323

 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 75/139 (53%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L KDG    A  LF ++ DKG  PDV+ ++ +I+++  +G+  +A ++   M+   
Sbjct: 82  IIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMIDSFCRSGRWTDAEQLLRDMIERQ 141

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+  T++ LI  L          + +A++   +M+ +G+ P   TY ++ + F +  +
Sbjct: 142 INPDVVTFSALINALVKEGK-----VSEAEEIYGDMLRRGIFPTTITYNSMIDGFCKQDR 196

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +++A+ +L  M +K   PD
Sbjct: 197 LNDAKRMLDSMASKSCSPD 215



 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 82/177 (46%), Gaps = 10/177 (5%)

Query: 60  FKKVVDEEPTDPRNL--QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIK 114
           +  ++D    D  ++  Q +F +M  +G+  + +    M D+  + G   +A QL   + 
Sbjct: 79  YNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMIDSFCRSGRWTDAEQLLRDMI 138

Query: 115 DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174
           ++   PDVV  +A+I A    G+  EA  ++  ML  G+ P   TY  +I G        
Sbjct: 139 ERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFPTTITYNSMIDGFC-----K 193

Query: 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              L DA++ L  M  K   P+  T++ +   + +A++VD    +  +M  +G V +
Sbjct: 194 QDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVAN 250



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 8/153 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +EI+  M   G+    +    M D   K    ++A ++   +  K   PDVV  + +I  
Sbjct: 166 EEIYGDMLRRGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLING 225

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y  A +    + +F  M   G+  N  TY  LI G     D +A     AQ  L  M+  
Sbjct: 226 YCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDA-----AQDLLNVMISS 280

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           G+ PN  T+ ++  +    +++ +A  +L+ ++
Sbjct: 281 GVAPNYITFQSMLASLCSKKELRKAFAILEDLQ 313



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 5/138 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K G T  AL L +++++      VV + A+I+     G    A  +F  M   G
Sbjct: 47  IINGLCKMGDTESALNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKG 106

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+  TY+ +I     +         DA++ L +M+ + + P+  T++A+  A V+  K
Sbjct: 107 IFPDVITYSGMIDSFCRSGRWT-----DAEQLLRDMIERQINPDVVTFSALINALVKEGK 161

Query: 213 VDEARGLLQQMKAKGFVP 230
           V EA  +   M  +G  P
Sbjct: 162 VSEAEEIYGDMLRRGIFP 179



 Score = 48.1 bits (113), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 58/147 (39%), Gaps = 34/147 (23%)

Query: 115 DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174
           + G  PDVV  T ++      G+  +AL +  RM+  G  P    Y  +I GL    D  
Sbjct: 3   ETGCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQP----YGTIINGLCKMGDTE 58

Query: 175 A-------------------------KILGD-----AQKYLMEMVGKGMRPNAGTYTAVF 204
           +                         ++  D     AQ    EM  KG+ P+  TY+ + 
Sbjct: 59  SALNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMI 118

Query: 205 EAFVRAQKVDEARGLLQQMKAKGFVPD 231
           ++F R+ +  +A  LL+ M  +   PD
Sbjct: 119 DSFCRSGRWTDAEQLLRDMIERQINPD 145


>gi|358347568|ref|XP_003637828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503763|gb|AES84966.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 529

 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 92/202 (45%), Gaps = 18/202 (8%)

Query: 47  VNTKSKLPPPYDPFKKVVDEEPTDPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLT 103
           VN   K    ++   K+VDE          +F +M  + +  + V    + D L K G T
Sbjct: 270 VNVVKKAKSIFNTMIKMVDEA-------MNLFEEMHFKQIYPDMVIYNSLIDGLCKSGRT 322

Query: 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
             AL+   ++  +G  PD+  + ++++A        +A+ +  ++   G+ P+  TY +L
Sbjct: 323 PYALKFIGEMHYRGQPPDIFTYNSLLDALCKNYHVDKAIELLTKLKDQGIQPSVCTYNIL 382

Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           I GL  +       L DA+K   +++ KG   +  TY A+ + F +    DE   ++ +M
Sbjct: 383 INGLCKSGR-----LKDAEKVFEDLLVKGYNTDVYTYNAMIKGFCKKGLFDETLAMVSKM 437

Query: 224 KAKGFVPDEKAVK---EALIDK 242
           K  G  PD K  +    +L DK
Sbjct: 438 KDSGCSPDAKNCEIIIRSLFDK 459



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 9/158 (5%)

Query: 78  FH-KMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           FH K+  +G   N V    + + L K G T  AL+   +I  K   PDVV +  +I+   
Sbjct: 104 FHDKVVAQGFKLNQVSYGTLINGLCKVGQTRAALEFLRRIDGKLVQPDVVMYNTIIDGLC 163

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
                 +A  ++  M+A  + P+  TY  LI GL   A      L DA   L +M+ + +
Sbjct: 164 KDKLVNDAFNLYFEMVAKRICPSVVTYNTLICGLCIMAQ-----LKDAIGLLHKMILEDI 218

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            P   T++ + +AF +  K+ EA+ +   M  +   P+
Sbjct: 219 NPTVYTFSILIDAFCKEGKMKEAKNVFAVMMKEDVKPN 256



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 8/154 (5%)

Query: 80  KMRTEGLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           +M   GL +N V +    +  S+ G    +  +FA I  KG+  D +  T +I+     G
Sbjct: 37  QMEFNGLASNLVTLSILINCYSQLGQNALSFSVFANILKKGYGSDAITFTTLIKGLCLKG 96

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196
           +  +AL    +++A G   N  +Y  LI GL       A     A ++L  + GK ++P+
Sbjct: 97  EIHKALHFHDKVVAQGFKLNQVSYGTLINGLCKVGQTRA-----ALEFLRRIDGKLVQPD 151

Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
              Y  + +   + + V++A  L  +M AK   P
Sbjct: 152 VVMYNTIIDGLCKDKLVNDAFNLYFEMVAKRICP 185



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 63/135 (46%), Gaps = 6/135 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DAL K+    +A++L  ++KD+G  P V  +  +I     +G+ K+A +VF  +L  G
Sbjct: 347 LLDALCKNYHVDKAIELLTKLKDQGIQPSVCTYNILINGLCKSGRLKDAEKVFEDLLVKG 406

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
              + YTY  +IKG          +  +    + +M   G  P+A     +  +     +
Sbjct: 407 YNTDVYTYNAMIKGFCKKG-----LFDETLAMVSKMKDSGCSPDAKNCEIIIRSLFDKGE 461

Query: 213 VDEARGLLQQMKAKG 227
            D+A G  ++M  +G
Sbjct: 462 NDKA-GKFREMIVRG 475



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 76/172 (44%), Gaps = 24/172 (13%)

Query: 77  IFHKMRTEGLTNNAVKMF----DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           + HKM  E + N  V  F    DA  K+G   EA  +FA +  +   P++V + ++++ +
Sbjct: 209 LLHKMILEDI-NPTVYTFSILIDAFCKEGKMKEAKNVFAVMMKEDVKPNIVTYNSLMDGH 267

Query: 133 ASAGQGK--------------EALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKIL 178
                 K              EA+ +F  M    + P+   Y  LI GL  +        
Sbjct: 268 HLVNVVKKAKSIFNTMIKMVDEAMNLFEEMHFKQIYPDMVIYNSLIDGLCKSGRTPY--- 324

Query: 179 GDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
             A K++ EM  +G  P+  TY ++ +A  +   VD+A  LL ++K +G  P
Sbjct: 325 --ALKFIGEMHYRGQPPDIFTYNSLLDALCKNYHVDKAIELLTKLKDQGIQP 374



 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 32/140 (22%), Positives = 60/140 (42%), Gaps = 5/140 (3%)

Query: 92  KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
           K+  +L K       + L  Q++  G   ++V  + +I  Y+  GQ   +  VF  +L  
Sbjct: 17  KILGSLVKANHYSIVVSLHRQMEFNGLASNLVTLSILINCYSQLGQNALSFSVFANILKK 76

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           G   +A T+  LIKGL    +     +  A  +  ++V +G + N  +Y  +     +  
Sbjct: 77  GYGSDAITFTTLIKGLCLKGE-----IHKALHFHDKVVAQGFKLNQVSYGTLINGLCKVG 131

Query: 212 KVDEARGLLQQMKAKGFVPD 231
           +   A   L+++  K   PD
Sbjct: 132 QTRAALEFLRRIDGKLVQPD 151



 Score = 45.8 bits (107), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 70/183 (38%), Gaps = 44/183 (24%)

Query: 93  MFDALSKDGLTHEALQLF-------------------------AQIKDKGHM-------- 119
           + D L KD L ++A  L+                         AQ+KD   +        
Sbjct: 158 IIDGLCKDKLVNDAFNLYFEMVAKRICPSVVTYNTLICGLCIMAQLKDAIGLLHKMILED 217

Query: 120 --PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKG---------LA 168
             P V   + +I+A+   G+ KEA  VF  M+   V PN  TY  L+ G           
Sbjct: 218 INPTVYTFSILIDAFCKEGKMKEAKNVFAVMMKEDVKPNIVTYNSLMDGHHLVNVVKKAK 277

Query: 169 AAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
           +  +   K++ +A     EM  K + P+   Y ++ +   ++ +   A   + +M  +G 
Sbjct: 278 SIFNTMIKMVDEAMNLFEEMHFKQIYPDMVIYNSLIDGLCKSGRTPYALKFIGEMHYRGQ 337

Query: 229 VPD 231
            PD
Sbjct: 338 PPD 340


>gi|260780430|gb|ACX50761.1| AT1G03560-like protein [Capsella bursa-pastoris]
 gi|260780496|gb|ACX50794.1| AT1G03560-like protein [Capsella bursa-pastoris]
          Length = 188

 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 76/146 (52%), Gaps = 6/146 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K+G  +E   +F  +  KG  P+V  +T +I+ YA +G  ++A+R+  RM+  G  P
Sbjct: 26  GLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGNVEDAIRLLHRMIDEGFKP 85

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  T++V++ GL      N ++  +A  Y       G+  N+  Y+++ +   +A ++DE
Sbjct: 86  DVVTFSVVVNGLCK----NGRV-EEALDYFQTCQFNGLAINSMFYSSLIDGLGKAGRIDE 140

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
           A  L ++M  KG   D      ALID
Sbjct: 141 AERLFEEMSEKGCTRDSYCYN-ALID 165



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 72/134 (53%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  +K G   +A++L  ++ D+G  PDVV  + V+      G+ +EAL  F     +G
Sbjct: 58  LIDGYAKSGNVEDAIRLLHRMIDEGFKPDVVTFSVVVNGLCKNGRVEEALDYFQTCQFNG 117

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +A N+  Y+ LI GL     G A  + +A++   EM  KG   ++  Y A+ +AF +  K
Sbjct: 118 LAINSMFYSSLIDGL-----GKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHGK 172

Query: 213 VDEARGLLQQMKAK 226
           VDEA  L ++M+ +
Sbjct: 173 VDEAMTLFKRMEEE 186



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/143 (27%), Positives = 64/143 (44%), Gaps = 6/143 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
            + L+ ++ +KG      A + VI      G+  E   VF  M+  G  PN   Y VLI 
Sbjct: 1   CVALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLID 60

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G A +  GN +   DA + L  M+ +G +P+  T++ V     +  +V+EA    Q  + 
Sbjct: 61  GYAKS--GNVE---DAIRLLHRMIDEGFKPDVVTFSVVVNGLCKNGRVEEALDYFQTCQF 115

Query: 226 KGFVPDEKAVKEALIDKRGQGFR 248
            G   +      +LID  G+  R
Sbjct: 116 NGLAIN-SMFYSSLIDGLGKAGR 137


>gi|242095134|ref|XP_002438057.1| hypothetical protein SORBIDRAFT_10g007440 [Sorghum bicolor]
 gi|241916280|gb|EER89424.1| hypothetical protein SORBIDRAFT_10g007440 [Sorghum bicolor]
          Length = 499

 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 112/245 (45%), Gaps = 24/245 (9%)

Query: 3   ATAILRWLLHSPSPKRSLRITNTRVNATLQRSLSSSS-----DQPTKKYVNTKSK-LPPP 56
           A A+LR+L   P+  R+ R+++  +   L R +SS       D+      + ++K LP P
Sbjct: 127 ALALLRFL---PALLRTSRVSHKALAVCLDRLVSSRGCHGVLDELLSDLRDPRNKYLPRP 183

Query: 57  YDPFKKVVDEEPTDPRNLQ---EIFHKMRTEGLTN---NAVK---MFDALSKDGLTHEAL 107
                 ++ +       L+   ++  +MR     +   N V    +   L + G   EA 
Sbjct: 184 NTCVYNILIKHFVRIGELETAFKVLDEMREYTCADVKPNLVTYSTLIAGLCRGGKMMEAF 243

Query: 108 QLFAQIKDKGHM-PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKG 166
           +LF ++ +K  + PD + +  +I+ +   GQ  +A  +F  M  +   PNA+ YA LI G
Sbjct: 244 ELFEEMIEKDRIVPDQLLYNVIIDGFCRLGQVDKARAIFGFMKKNDCEPNAFNYATLING 303

Query: 167 LAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK 226
               AD  A     A+    EM   G+ P+A +YTA+     R   VDEA  L+ +MK K
Sbjct: 304 HCKKADIEA-----ARSVFEEMRNAGVEPDAVSYTALIGCLCRHGSVDEAINLVLEMKQK 358

Query: 227 GFVPD 231
           G   D
Sbjct: 359 GCRAD 363



 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 71/186 (38%), Gaps = 33/186 (17%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +F +MR  G+  +AV    +   L + G   EA+ L  ++K KG   DVV +  VIE 
Sbjct: 314 RSVFEEMRNAGVEPDAVSYTALIGCLCRHGSVDEAINLVLEMKQKGCRADVVTYNLVIEG 373

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA---------------------- 169
               G+  EA+ +   +   GV  N  +Y +L+  L +                      
Sbjct: 374 LCRDGRTVEAMDLLESVPLEGVKLNVASYRILMNCLCSRGEMDKAVGLLGLMLGRGFLPH 433

Query: 170 -AADGNAKI-------LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221
            AA  N  I       + DA   L  +   G  P A  +  + E   R +K   +  LL 
Sbjct: 434 YAASNNLLIGLCDAGRIADATMALYGLADAGFMPEARCWERLVETMCRERKQRRSTELLD 493

Query: 222 QMKAKG 227
            +   G
Sbjct: 494 VLVGVG 499



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 5/135 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   + G   +A  +F  +K     P+   +  +I  +      + A  VF  M  +G
Sbjct: 265 IIDGFCRLGQVDKARAIFGFMKKNDCEPNAFNYATLINGHCKKADIEAARSVFEEMRNAG 324

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V P+A +Y  LI  L          + +A   ++EM  KG R +  TY  V E   R  +
Sbjct: 325 VEPDAVSYTALIGCLCRHGS-----VDEAINLVLEMKQKGCRADVVTYNLVIEGLCRDGR 379

Query: 213 VDEARGLLQQMKAKG 227
             EA  LL+ +  +G
Sbjct: 380 TVEAMDLLESVPLEG 394



 Score = 45.8 bits (107), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 34/143 (23%), Positives = 62/143 (43%), Gaps = 8/143 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           IF  M+      NA     + +   K      A  +F ++++ G  PD V++TA+I    
Sbjct: 281 IFGFMKKNDCEPNAFNYATLINGHCKKADIEAARSVFEEMRNAGVEPDAVSYTALIGCLC 340

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G   EA+ + + M   G   +  TY ++I+GL    DG      +A   L  +  +G+
Sbjct: 341 RHGSVDEAINLVLEMKQKGCRADVVTYNLVIEGL--CRDGRTV---EAMDLLESVPLEGV 395

Query: 194 RPNAGTYTAVFEAFVRAQKVDEA 216
           + N  +Y  +        ++D+A
Sbjct: 396 KLNVASYRILMNCLCSRGEMDKA 418


>gi|7340725|emb|CAB82968.1| putative protein [Arabidopsis thaliana]
          Length = 308

 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 71/136 (52%), Gaps = 6/136 (4%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA +++  + D G  PD+VAH  ++E    + +  +A+++F  M + G  PN  +Y ++I
Sbjct: 25  EAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMI 84

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           +     +     I     +Y  +MV  G++P+A  YT +   F   +K+D    LL++M+
Sbjct: 85  RDFCKQSSMETAI-----EYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQ 139

Query: 225 AKGFVPDEKAVKEALI 240
            KG  PD K    ALI
Sbjct: 140 EKGHPPDGKTYN-ALI 154



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 67/140 (47%), Gaps = 11/140 (7%)

Query: 72  RNLQE---IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAH 125
           RNL E   I++ M   GL  + V    M + L +     +A++LF  +K KG  P+V ++
Sbjct: 21  RNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSY 80

Query: 126 TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185
           T +I  +      + A+  F  M+ SG+ P+A  Y  LI G      G  K L    + L
Sbjct: 81  TIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGF-----GTQKKLDTVYELL 135

Query: 186 MEMVGKGMRPNAGTYTAVFE 205
            EM  KG  P+  TY A+ +
Sbjct: 136 KEMQEKGHPPDGKTYNALIK 155



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 68/134 (50%), Gaps = 12/134 (8%)

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
           +L  ++++KGH PD   + A+I+  A+    +   R++ +M+ + + P+ +T+ +++K  
Sbjct: 133 ELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSY 192

Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
             A +     +G A     EM+ KG+ P+  +YT +    +   K  EA   L++M  KG
Sbjct: 193 FVARNYE---MGRA--VWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKG 247

Query: 228 FVPDEKAVKEALID 241
                  +K  LID
Sbjct: 248 -------MKTPLID 254



 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 37/180 (20%), Positives = 79/180 (43%), Gaps = 22/180 (12%)

Query: 49  TKSKLPPPYDPFKKVVDE-EPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEAL 107
           T+ KL   Y+  K++ ++  P D +    +   M  + +  +  ++++ + ++ +     
Sbjct: 124 TQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIE---- 179

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
                       P +     ++++Y  A   +    V+  M+  G+ P+  +Y VLI+GL
Sbjct: 180 ------------PSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGL 227

Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
            +  +G ++   +A +YL EM+ KGM+     Y      F R  + +    L Q+ K  G
Sbjct: 228 IS--EGKSR---EACRYLEEMLDKGMKTPLIDYNKFAADFHRGGQPEIFEELAQRAKFSG 282



 Score = 42.4 bits (98), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 5/81 (6%)

Query: 154 APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV 213
            PN  TY VL+ G     +     L +A +   +M+  G++P+   +  + E  +R+ K 
Sbjct: 4   TPNMMTYTVLLNGWCRVRN-----LIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKK 58

Query: 214 DEARGLLQQMKAKGFVPDEKA 234
            +A  L   MK+KG  P+ ++
Sbjct: 59  SDAIKLFHVMKSKGPCPNVRS 79


>gi|299471515|emb|CBN80001.1| conserved unknown protein [Ectocarpus siliculosus]
          Length = 687

 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 100/216 (46%), Gaps = 36/216 (16%)

Query: 76  EIFHKMRTEGLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++  +MRT+G++ N +      DA +K     EAL L  ++   G +P V+++ +   A 
Sbjct: 308 DLLEQMRTQGVSPNVISYNSAIDACAKGDRWKEALDLLREMTTVGLVPTVISYNSATAAC 367

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTY---------------AV-LIKGLAAAADG--- 173
           A  G+  EAL +   M A G+APN  +Y               AV L++G++        
Sbjct: 368 AVNGRWVEALELLKEMPAQGIAPNTISYNSALDACAKGGQWEKAVKLLRGMSTVGSDPDI 427

Query: 174 ---NAKI--LGDAQKY------LMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
              N+ I   G  Q++      L EM   G+ PN  TY +  EA  R+ +  EA GL ++
Sbjct: 428 ISFNSAIDACGRGQQWETAVELLREMPTAGLTPNVITYNSAIEACGRSARWQEAMGLFRE 487

Query: 223 MKAKGFVPDEKAVKEALID--KRGQGFRGVINILFG 256
           M  +G  P+      ++ID   +G+ +   + +L G
Sbjct: 488 MPTRGLSPN-VVTYNSMIDACAKGEQWELAVQLLTG 522



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 87/177 (49%), Gaps = 11/177 (6%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQI--KDKGHMPDVVAHTAVIEA 131
           +  +M TEG+T + V       A SK G   EA+ L  Q+    +G  PDVV + + I A
Sbjct: 132 LLREMPTEGVTPDVVTYNSAIAACSKGGRWKEAMDLLTQMVAPTEGITPDVVTYNSAIAA 191

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
            ++ G+ KEA+ +  +M+A GV PN  TY   I    A A G  +   +A   L E++ +
Sbjct: 192 CSNGGRWKEAMDLLEQMVAQGVPPNLITYNSAI---GACAKG--RRWEEAMDLLEEVIEQ 246

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFR 248
           G  P+  TY  V +A  +  +  EA  LL QM     +P +     ++I   G+G R
Sbjct: 247 GFPPSTRTYNPVIDACAKGGRWLEAMDLLGQMLTND-IPADVISYSSVIAACGRGRR 302



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 9/174 (5%)

Query: 76  EIFHKMRTEGLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+  +M  +G+  N +      DA +K G   +A++L   +   G  PD+++  + I+A 
Sbjct: 378 ELLKEMPAQGIAPNTISYNSALDACAKGGQWEKAVKLLRGMSTVGSDPDIISFNSAIDAC 437

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               Q + A+ +   M  +G+ PN  TY   I+     A G +    +A     EM  +G
Sbjct: 438 GRGQQWETAVELLREMPTAGLTPNVITYNSAIE-----ACGRSARWQEAMGLFREMPTRG 492

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
           + PN  TY ++ +A  + ++ + A  LL  M A+G  PD  +   A I+  G+G
Sbjct: 493 LSPNVVTYNSMIDACAKGEQWELAVQLLTGMPARGVAPDVISYNSA-IEACGKG 545



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 79/159 (49%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+  +M T GLT N +      +A  +     EA+ LF ++  +G  P+VV + ++I+A 
Sbjct: 448 ELLREMPTAGLTPNVITYNSAIEACGRSARWQEAMGLFREMPTRGLSPNVVTYNSMIDAC 507

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           A   Q + A+++   M A GVAP+  +Y   I+     A G  +    A + L  M  +G
Sbjct: 508 AKGEQWELAVQLLTGMPARGVAPDVISYNSAIE-----ACGKGEQWELALQLLKGMPTRG 562

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +P+  +Y +   A  ++ +  EA GLL+ M   G  P+
Sbjct: 563 PKPDIISYNSAVTACAKSGRWREALGLLKDMATVGLTPN 601



 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 75/145 (51%), Gaps = 8/145 (5%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA--SGVAPNAYTYAVL 163
           A++L  ++  +G  PDVV + + I A +  G+ KEA+ +  +M+A   G+ P+  TY   
Sbjct: 129 AVRLLREMPTEGVTPDVVTYNSAIAACSKGGRWKEAMDLLTQMVAPTEGITPDVVTYNSA 188

Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           I     AA  N     +A   L +MV +G+ PN  TY +   A  + ++ +EA  LL+++
Sbjct: 189 I-----AACSNGGRWKEAMDLLEQMVAQGVPPNLITYNSAIGACAKGRRWEEAMDLLEEV 243

Query: 224 KAKGFVPDEKAVKEALIDKRGQGFR 248
             +GF P  +     +ID   +G R
Sbjct: 244 IEQGFPPSTRTYNP-VIDACAKGGR 267



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 66/138 (47%), Gaps = 5/138 (3%)

Query: 94  FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGV 153
            +A  K      ALQL   +  +G  PD++++ + + A A +G+ +EAL +   M   G+
Sbjct: 539 IEACGKGEQWELALQLLKGMPTRGPKPDIISYNSAVTACAKSGRWREALGLLKDMATVGL 598

Query: 154 APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV 213
            PN  +Y     G A  A G  +    A + L EM   G  PN  TY+A  +A  +  + 
Sbjct: 599 TPNTVSY-----GAAIHACGKGEQWDVAVRILKEMQTHGATPNLITYSAAIDACAKQGRW 653

Query: 214 DEARGLLQQMKAKGFVPD 231
            EA  LL  ++ +G  PD
Sbjct: 654 KEAVDLLTDLRRQGLTPD 671



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 75/160 (46%), Gaps = 7/160 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DA +K G   EA+ L  Q+       DV+++++VI A     + KEA+ +  +M   G
Sbjct: 258 VIDACAKGGRWLEAMDLLGQMLTNDIPADVISYSSVIAACGRGRRWKEAMDLLEQMRTQG 317

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V+PN  +Y   I    A A G+     +A   L EM   G+ P   +Y +   A     +
Sbjct: 318 VSPNVISYNSAID---ACAKGDR--WKEALDLLREMTTVGLVPTVISYNSATAACAVNGR 372

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEAL--IDKRGQGFRGV 250
             EA  LL++M A+G  P+  +   AL    K GQ  + V
Sbjct: 373 WVEALELLKEMPAQGIAPNTISYNSALDACAKGGQWEKAV 412



 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 56/123 (45%), Gaps = 8/123 (6%)

Query: 88  NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMR 147
           N+AV    A +K G   EAL L   +   G  P+ V++ A I A     Q   A+R+   
Sbjct: 571 NSAVT---ACAKSGRWREALGLLKDMATVGLTPNTVSYGAAIHACGKGEQWDVAVRILKE 627

Query: 148 MLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAF 207
           M   G  PN  TY+  I   A A  G  K   +A   L ++  +G+ P+A TY  V  AF
Sbjct: 628 MQTHGATPNLITYSAAID--ACAKQGRWK---EAVDLLTDLRRQGLTPDAQTYLTVISAF 682

Query: 208 VRA 210
            R 
Sbjct: 683 QRC 685



 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 63/141 (44%), Gaps = 9/141 (6%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +A  +D  T  AL    + K  G   D  ++   I A ++  Q   A+R+   M   G
Sbjct: 83  LLEAKGRDWRT--ALAALDEFKISGGSLDTTSYNIAIAACSNGRQWATAVRLLREMPTEG 140

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG--KGMRPNAGTYTAVFEAFVRA 210
           V P+  TY   I   A +  G  K   +A   L +MV   +G+ P+  TY +   A    
Sbjct: 141 VTPDVVTYNSAIA--ACSKGGRWK---EAMDLLTQMVAPTEGITPDVVTYNSAIAACSNG 195

Query: 211 QKVDEARGLLQQMKAKGFVPD 231
            +  EA  LL+QM A+G  P+
Sbjct: 196 GRWKEAMDLLEQMVAQGVPPN 216



 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 3/99 (3%)

Query: 77  IFHKMRTEGLTNNAVKMFDALSKDGLTHE---ALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +   M T GLT N V    A+   G   +   A+++  +++  G  P+++ ++A I+A A
Sbjct: 589 LLKDMATVGLTPNTVSYGAAIHACGKGEQWDVAVRILKEMQTHGATPNLITYSAAIDACA 648

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172
             G+ KEA+ +   +   G+ P+A TY  +I      +D
Sbjct: 649 KQGRWKEAVDLLTDLRRQGLTPDAQTYLTVISAFQRCSD 687


>gi|297797449|ref|XP_002866609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312444|gb|EFH42868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 724

 Score = 77.0 bits (188), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 73/160 (45%), Gaps = 8/160 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+   MR +G   N      + D   K G   EA  L  ++   G  P+ V    +I A+
Sbjct: 404 EVLRDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAF 463

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               +  EA+ +F  M   G  P+ YT+  LI GL    +     +  A   L +M+ +G
Sbjct: 464 CKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDE-----IKHALWLLRDMISEG 518

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           +  N  TY  +  AF+R  ++ EAR L+ +M  +G + DE
Sbjct: 519 VVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSLLDE 558



 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 77/157 (49%), Gaps = 8/157 (5%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           + ++M  +GL  N V    +  A  K+    EA+++F ++  KG  PDV    ++I    
Sbjct: 440 LLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLC 499

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
              + K AL +   M++ GV  N  TY  LI       +     + +A+K + EMV +G 
Sbjct: 500 EVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGE-----IKEARKLVNEMVFQGS 554

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
             +  TY ++ +   RA +VD+AR L ++M   G VP
Sbjct: 555 LLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGLVP 591



 Score = 70.1 bits (170), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 84/158 (53%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +   M +EG+  N V    + +A  + G   EA +L  ++  +G + D + + ++I+   
Sbjct: 510 LLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLC 569

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG+  +A  +F +ML  G+ P++ +  +LI GL  +      ++ +A ++  EMV +G 
Sbjct: 570 RAGEVDKARSLFEKMLRDGLVPSSISCNILINGLCRSG-----MVEEAVEFQKEMVLRGS 624

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            P+  T+ ++     RA ++++   + ++++A+G  PD
Sbjct: 625 TPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPD 662



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 13/160 (8%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++ ++M   G T + +    + + L K G    A  LF +I      P  V    +I  +
Sbjct: 302 KMVNRMLIRGFTPDDITYGYLMNGLCKIGRVDAAKDLFYRIPK----PTSVIFNTLIHGF 357

Query: 133 ASAGQGKEALRVFMRMLAS-GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
            + G+  +A  V   M+ S G+ P+  TY  LI G          ++G A + L +M  K
Sbjct: 358 VTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKG-----LVGLALEVLRDMRNK 412

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G +PN  +YT + + F +  K+DEA  LL +M A G  P+
Sbjct: 413 GCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPN 452



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 71/143 (49%), Gaps = 8/143 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +F KM  +GL  +++    + + L + G+  EA++   ++  +G  PD+V   ++I  
Sbjct: 578 RSLFEKMLRDGLVPSSISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLING 637

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              AG+ ++ L +F ++ A G+ P+  TY  L+  L          + DA   L E +  
Sbjct: 638 LCRAGRIEDGLTMFRKLQAEGIPPDTVTYNTLMSWLCKGG-----FVYDACLLLDEGIED 692

Query: 192 GMRPNAGTYTAVFEAFVRAQKVD 214
           G  PN  T++ + ++ V  + +D
Sbjct: 693 GFVPNDRTWSILLQSLVPQETLD 715



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/227 (20%), Positives = 103/227 (45%), Gaps = 13/227 (5%)

Query: 21  RITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKKVVDEEPTDP--RNLQEIF 78
           +IT  ++   L+  L  S+      +  ++      +D ++ ++ +  ++   + +  + 
Sbjct: 69  KITPFQLCKLLELPLDVSTSMELFSWTGSQKGYRHSFDVYQVLIGKLGSNGEFKTIDRLL 128

Query: 79  HKMRTEGLTNNAVKMFDALSKD----GLTHEALQLFAQIKD-KGHMPDVVAHTAVIEAYA 133
            +M+ EG+      +F ++ +D    G   +  +L  ++++     P   ++  V+E   
Sbjct: 129 MQMKDEGIVFKE-SLFISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILV 187

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
           S    K A  VF  ML+  + P  +T+ V++K L A  + ++     A   L +M   G 
Sbjct: 188 SGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKALCAVNEVDS-----ALSVLRDMTKHGC 242

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
            PN+  Y  +  +  +  +V+EA  LL++M   G VPD +   + ++
Sbjct: 243 VPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVIL 289



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 5/113 (4%)

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
           P +     V++A  +  +   AL V   M   G  PN+  Y  LI  L+     N     
Sbjct: 209 PTLFTFGVVMKALCAVNEVDSALSVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVN----- 263

Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           +A + L EM   G  P+A T+  V     +  +++EA  ++ +M  +GF PD+
Sbjct: 264 EALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFTPDD 316



 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 69/160 (43%), Gaps = 7/160 (4%)

Query: 75  QEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           + +F     + +T N+  +   L + G   +A  LF ++   G +P  ++   +I     
Sbjct: 548 EMVFQGSLLDEITYNS--LIKGLCRAGEVDKARSLFEKMLRDGLVPSSISCNILINGLCR 605

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
           +G  +EA+     M+  G  P+  T+  LI GL  A       + D      ++  +G+ 
Sbjct: 606 SGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGR-----IEDGLTMFRKLQAEGIP 660

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
           P+  TY  +     +   V +A  LL +    GFVP+++ 
Sbjct: 661 PDTVTYNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNDRT 700


>gi|255565671|ref|XP_002523825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536913|gb|EEF38551.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 528

 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 60/127 (47%), Gaps = 6/127 (4%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA   F  +KDK   PDV+ +T ++  +  AG   EA RVF  M  +G  PN YTY ++I
Sbjct: 230 EAQSFFDSLKDKFE-PDVIVYTNLVRGWCRAGNIPEAERVFTEMKVAGCMPNVYTYTIVI 288

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
             L          +  A     EM+  G  PN+ T+  +    V+A + ++   +  QMK
Sbjct: 289 DALCRCGQ-----ITRAHDVFAEMLDVGCEPNSITFNNLLRVHVKAGRTEKVLQVYNQMK 343

Query: 225 AKGFVPD 231
             G  PD
Sbjct: 344 RMGCPPD 350



 Score = 75.5 bits (184), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 77/153 (50%), Gaps = 8/153 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +F +M+  G   N      + DAL + G    A  +FA++ D G  P+ +    ++  
Sbjct: 266 ERVFTEMKVAGCMPNVYTYTIVIDALCRCGQITRAHDVFAEMLDVGCEPNSITFNNLLRV 325

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +  AG+ ++ L+V+ +M   G  P+  TY  LI+  +   DGN   L +A K L  MV K
Sbjct: 326 HVKAGRTEKVLQVYNQMKRMGCPPDTVTYNFLIE--SHCKDGN---LDEALKVLNSMVKK 380

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           G  PNA T+  +F +  + + V+ A  L  +MK
Sbjct: 381 GCSPNASTFNGLFGSIAKLRDVNGAHRLYAKMK 413



 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 71/160 (44%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVKMFDALS---KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            ++F +M   G   N++   + L    K G T + LQ++ Q+K  G  PD V +  +IE+
Sbjct: 301 HDVFAEMLDVGCEPNSITFNNLLRVHVKAGRTEKVLQVYNQMKRMGCPPDTVTYNFLIES 360

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +   G   EAL+V   M+  G +PNA T+  L   +A   D N      A +   +M   
Sbjct: 361 HCKDGNLDEALKVLNSMVKKGCSPNASTFNGLFGSIAKLRDVNG-----AHRLYAKMKEL 415

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             + N  TY  +   FV  +  D    L ++M      P+
Sbjct: 416 KCKANTVTYNILMRMFVDTKSTDMVLKLKKEMDEDDVEPN 455



 Score = 45.4 bits (106), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 42/183 (22%), Positives = 79/183 (43%), Gaps = 13/183 (7%)

Query: 53  LPPPYDPFKKVVDEEPTDPRNLQE---IFHKMRTEGLTNNAVK---MFDALSKDGLTHEA 106
            PP    +  +++    D  NL E   + + M  +G + NA     +F +++K    + A
Sbjct: 347 CPPDTVTYNFLIESHCKDG-NLDEALKVLNSMVKKGCSPNASTFNGLFGSIAKLRDVNGA 405

Query: 107 LQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKG 166
            +L+A++K+     + V +  ++  +         L++   M    V PN  TY VLI  
Sbjct: 406 HRLYAKMKELKCKANTVTYNILMRMFVDTKSTDMVLKLKKEMDEDDVEPNVNTYCVLIAM 465

Query: 167 LAAAADGNAKILGDAQKYLMEMV-GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
                  N     +A K+  EMV  K ++P+   Y  V +   +A ++ +   L+  M  
Sbjct: 466 YCGMGHWN-----NAYKFFREMVEEKCLKPSLPVYEKVLQQLRKAGQLKKHEELVAVMVD 520

Query: 226 KGF 228
           +GF
Sbjct: 521 RGF 523


>gi|449521772|ref|XP_004167903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Cucumis sativus]
          Length = 645

 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 82/184 (44%), Gaps = 10/184 (5%)

Query: 53  LPPPYDPFKKVVD--EEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEAL 107
           L P    F  ++D      D    QE+F +MR +G+    +    +   L  D    EA 
Sbjct: 178 LSPSVITFGTLIDGCCRQGDLLRAQEMFDEMRVKGIVPTVIVYTILIRGLCSDNKIEEAE 237

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
            +   +++ G  P+V  +  +++ Y      K+ALR++  ML  G+ P+  T+ +LI GL
Sbjct: 238 SMHRAMREVGVYPNVYTYNTLMDGYCKLANAKQALRLYQDMLGEGLVPDVVTFGILIDGL 297

Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
               +  A     A+   + M+   + PN   Y ++ +A+ +   V EA  L  +++   
Sbjct: 298 CKFGEMKA-----ARNLFVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMALFLELERFE 352

Query: 228 FVPD 231
             PD
Sbjct: 353 VSPD 356



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 77/158 (48%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           ++  M  EGL  + V    + D L K G    A  LF  +      P++  + ++I+AY 
Sbjct: 274 LYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDAYC 333

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G   EA+ +F+ +    V+P+ +TY++LI+GL + +        +A     +M  +G+
Sbjct: 334 KVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTE-----EAGNIFEKMTKEGI 388

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             N+ TY ++ +   +  K+D+A  +  QM   G  P+
Sbjct: 389 LANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPN 426



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 85/207 (41%), Gaps = 56/207 (27%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKG---------------- 117
           IF KM  EG+  N+V    + D   K+G   +AL++ +Q+ + G                
Sbjct: 379 IFEKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTLIDGYC 438

Query: 118 -------------------HMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAY 158
                                PDVV +TA+I+ +   G  KEAL+++  ML +G+ PN Y
Sbjct: 439 KIRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYGSMKEALKLYSDMLDNGITPNCY 498

Query: 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMV----------GKGMRP---NAGTYTAVFE 205
           T + L+ GL    DG    + DA +   E +            G +P   N   YTA+  
Sbjct: 499 TISCLLDGL--CKDGK---ISDALELFTEKIEFQTPRCNVDAGGSKPSLTNHVAYTALIH 553

Query: 206 AFVRAQKVDEARGLLQQMKAKGFVPDE 232
              +  +  +A  L   M+  G  PDE
Sbjct: 554 GLCQDGQFSKAVKLFSDMRRYGLQPDE 580



 Score = 70.1 bits (170), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 83/171 (48%), Gaps = 9/171 (5%)

Query: 74  LQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           L  I+ +M + GL+ + +    + D   + G    A ++F +++ KG +P V+ +T +I 
Sbjct: 166 LWRIYEEMISNGLSPSVITFGTLIDGCCRQGDLLRAQEMFDEMRVKGIVPTVIVYTILIR 225

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
              S  + +EA  +   M   GV PN YTY  L+ G    A  NAK    A +   +M+G
Sbjct: 226 GLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLA--NAK---QALRLYQDMLG 280

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           +G+ P+  T+  + +   +  ++  AR L   M      P+  AV  +LID
Sbjct: 281 EGLVPDVVTFGILIDGLCKFGEMKAARNLFVNMIKFSVTPN-IAVYNSLID 330



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 67/141 (47%), Gaps = 10/141 (7%)

Query: 103 THEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAV 162
           T EA  +F ++  +G + + V + ++I+     G+  +AL +  +M  +GV PN  T++ 
Sbjct: 373 TEEAGNIFEKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFST 432

Query: 163 LIKGLAAAADGNAKI--LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
           LI       DG  KI  L  A     EMV K + P+  TYTA+ +   +   + EA  L 
Sbjct: 433 LI-------DGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYGSMKEALKLY 485

Query: 221 QQMKAKGFVPDEKAVKEALID 241
             M   G  P+   +   L+D
Sbjct: 486 SDMLDNGITPNCYTIS-CLLD 505



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 67/156 (42%), Gaps = 7/156 (4%)

Query: 77  IFHKMRTEGLTNNAVK-MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASA 135
           ++HK+    LT  A   +   L K G      +++ ++   G  P V+    +I+     
Sbjct: 137 MYHKVGA-ALTIQACNVLLYVLVKTGRFELLWRIYEEMISNGLSPSVITFGTLIDGCCRQ 195

Query: 136 GQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP 195
           G    A  +F  M   G+ P    Y +LI+GL +    + KI  +A+     M   G+ P
Sbjct: 196 GDLLRAQEMFDEMRVKGIVPTVIVYTILIRGLCS----DNKI-EEAESMHRAMREVGVYP 250

Query: 196 NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           N  TY  + + + +     +A  L Q M  +G VPD
Sbjct: 251 NVYTYNTLMDGYCKLANAKQALRLYQDMLGEGLVPD 286



 Score = 52.0 bits (123), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/153 (24%), Positives = 68/153 (44%), Gaps = 33/153 (21%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQ----------IKDKGHMPDV 122
           +++  M   G+T N      + D L KDG   +AL+LF +          +   G  P +
Sbjct: 483 KLYSDMLDNGITPNCYTISCLLDGLCKDGKISDALELFTEKIEFQTPRCNVDAGGSKPSL 542

Query: 123 ---VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
              VA+TA+I      GQ  +A+++F  M   G+ P+   Y V+++GL            
Sbjct: 543 TNHVAYTALIHGLCQDGQFSKAVKLFSDMRRYGLQPDEVIYVVMLRGLFQV--------- 593

Query: 180 DAQKYLM-----EMVGKGMRPNAGTYTAVFEAF 207
              KY++     +M+  G+ PN+  +  + E +
Sbjct: 594 ---KYILMMLHADMLKFGVIPNSAVHVILCECY 623


>gi|302756535|ref|XP_002961691.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
 gi|300170350|gb|EFJ36951.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
          Length = 545

 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 91/188 (48%), Gaps = 18/188 (9%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM-PDVVAHTAVIEA 131
           ++F + R +G     V    M D L K G    AL L+  +  + H+ PD+  ++A+I  
Sbjct: 261 DLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMVREPHLKPDMFTYSALING 320

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM-VG 190
              + +G++A  ++  ML +G +P+  TY  L+ GL  +   +      A +   +M VG
Sbjct: 321 LNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLDGLCKSGCEDK-----AMEIFRKMGVG 375

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD--------EKAVKEALIDK 242
               PN  TYT + + F +  ++ +A  L ++M+ +  +PD        +K  KE+ ID+
Sbjct: 376 NVCDPNVITYTVLIDRFCKVDRLGDAVKLAKEMEGRSLLPDAVTFTTVIQKLCKESRIDE 435

Query: 243 RGQGFRGV 250
             + F  +
Sbjct: 436 AHELFESI 443



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 77/174 (44%), Gaps = 18/174 (10%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M D L K     +A+ LF Q+ DK   PDVV + A+I+      + KEA  +F    A G
Sbjct: 211 MIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKG 270

Query: 153 VAPNAYTYAVLIKGLAAAAD-GNAKILGDAQKYLMEMVGK-GMRPNAGTYTAVFEAFVRA 210
             P   TY  +I GL       NA  L D      +MV +  ++P+  TY+A+      +
Sbjct: 271 CHPTVVTYNTMIDGLCKCGRIENALTLYD------DMVREPHLKPDMFTYSALINGLNLS 324

Query: 211 QKVDEARGLLQQMKAKGFVPD--------EKAVKEALIDKRGQGFR--GVINIL 254
            + ++A  L ++M   G  PD        +   K    DK  + FR  GV N+ 
Sbjct: 325 NRGEKAYELYEEMLDTGCSPDVVTYNTLLDGLCKSGCEDKAMEIFRKMGVGNVC 378



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 89/201 (44%), Gaps = 37/201 (18%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHM--PDVVAHTAVIE 130
           E++ +M   G + + V    + D L K G   +A+++F ++   G++  P+V+ +T +I+
Sbjct: 332 ELYEEMLDTGCSPDVVTYNTLLDGLCKSGCEDKAMEIFRKMG-VGNVCDPNVITYTVLID 390

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD------------------ 172
            +    +  +A+++   M    + P+A T+  +I+ L   +                   
Sbjct: 391 RFCKVDRLGDAVKLAKEMEGRSLLPDAVTFTTVIQKLCKESRIDEAHELFESIGKTCKPD 450

Query: 173 ---------GNAKI--LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221
                    G  KI  + DA+K    M+  G  P   TYTA+   F R  +  +A  +  
Sbjct: 451 SVLFNTMLAGYCKITRIDDAKKLHDRMLDSGCAPTLATYTALVTGFCRTGRYSDALIMYH 510

Query: 222 QMKAKGFVPDEKAVKEALIDK 242
           +M   GF P E+ + E L+D+
Sbjct: 511 EMIEMGF-PPERHLAE-LVDR 529



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 86/195 (44%), Gaps = 13/195 (6%)

Query: 58  DPFKKVVDEEPTDPRNLQEIFHKM-RTEGLTNNAVKMFDALS---KDGLTHEALQLFAQI 113
           D   KV+   P DP    E+F    +    T+N     + LS   K     +A   F   
Sbjct: 70  DLVGKVIHRIP-DPNTAWEVFQWAGKQSKFTHNRFTCNNLLSVYVKARRVEDAHLFFQSH 128

Query: 114 KDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADG 173
                 PD V++  ++  +  AG  K+AL +F  M  SG+A    ++ ++++GL +    
Sbjct: 129 MKNVFEPDEVSYNTLMNGFFKAGDVKKALALFGEMKDSGIAV-LRSHNIVLRGLCSGGK- 186

Query: 174 NAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK 233
               +  A +   +M G    PN  +YT + +   +++KVD+A  L +QM  K   PD  
Sbjct: 187 ----ISMAWEVFKDMSGI-FSPNLISYTIMIDGLCKSRKVDKAITLFKQMVDKAIYPD-V 240

Query: 234 AVKEALIDKRGQGFR 248
               ALID  G+  R
Sbjct: 241 VTYGALIDGLGKQRR 255



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/130 (22%), Positives = 58/130 (44%), Gaps = 5/130 (3%)

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
           P+++++T +I+    + +  +A+ +F +M+   + P+  TY  LI GL     G  + + 
Sbjct: 203 PNLISYTIMIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGL-----GKQRRVK 257

Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
           +A     E   KG  P   TY  + +   +  +++ A  L   M  +  +  +     AL
Sbjct: 258 EAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMVREPHLKPDMFTYSAL 317

Query: 240 IDKRGQGFRG 249
           I+      RG
Sbjct: 318 INGLNLSNRG 327


>gi|302794007|ref|XP_002978768.1| hypothetical protein SELMODRAFT_109608 [Selaginella moellendorffii]
 gi|300153577|gb|EFJ20215.1| hypothetical protein SELMODRAFT_109608 [Selaginella moellendorffii]
          Length = 713

 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 84/159 (52%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +++  M + GL  + V    +  A  K G   +AL +   I+    +P +  +T++++ Y
Sbjct: 362 KVWEDMVSAGLKPDIVTYNILVHAFCKAGRMDKALGVLENIQANRLLPTIETYTSILDGY 421

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G  ++AL VF R+  +G+ P   +Y  L+ GLA      A+ + +A+  L EM+  G
Sbjct: 422 VKGGHIQKALEVFDRIKTAGLRPGVVSYNSLLSGLA-----KARQMENARLMLDEMLANG 476

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + PN  +YTA+ E + RA  V++A G+ Q+MK +    D
Sbjct: 477 VVPNERSYTALTEGYARAGDVEKAFGMFQRMKKENLAID 515



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 77/160 (48%), Gaps = 8/160 (5%)

Query: 74  LQEIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           ++ +  +M  EG   N      + +  ++     + L  F ++K  G  P    +  +++
Sbjct: 255 VEALLAQMEEEGFQGNLGLYTTVLNGFAEIRDEEKCLSFFHRLKACGLSPTAATYGCIVK 314

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
            +  AG   +AL +   M   GV+PN   YA+++ G A   D  A     A K   +MV 
Sbjct: 315 LFTKAGNMAKALDILEEMDKHGVSPNKMIYAMIMDGYARGGDFTA-----AFKVWEDMVS 369

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
            G++P+  TY  +  AF +A ++D+A G+L+ ++A   +P
Sbjct: 370 AGLKPDIVTYNILVHAFCKAGRMDKALGVLENIQANRLLP 409



 Score = 60.1 bits (144), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 30/169 (17%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   K G   +AL++F +IK  G  P VV++ +++   A A Q + A  +   MLA+G
Sbjct: 417 ILDGYVKGGHIQKALEVFDRIKTAGLRPGVVSYNSLLSGLAKARQMENARLMLDEMLANG 476

Query: 153 VAPNAYTYAVLIKGLAAAAD------------------------------GNAKILGDAQ 182
           V PN  +Y  L +G A A D                                +  +  A 
Sbjct: 477 VVPNERSYTALTEGYARAGDVEKAFGMFQRMKKENLAIDIVAYGALLKACCKSGAMQRAV 536

Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +   ++   G++ N  TY  + + + R  ++ +AR LL+ M+  GF  D
Sbjct: 537 EVFQQITDAGLKHNRITYCTMLDGWARKGELSKARDLLKDMQKHGFHLD 585



 Score = 57.0 bits (136), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 68/160 (42%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +  F K + E L    +    +  A  + G       L AQ++++G   ++  +T V+  
Sbjct: 221 EHWFEKFKAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEGFQGNLGLYTTVLNG 280

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +A     ++ L  F R+ A G++P A TY  ++K    A +     +  A   L EM   
Sbjct: 281 FAEIRDEEKCLSFFHRLKACGLSPTAATYGCIVKLFTKAGN-----MAKALDILEEMDKH 335

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G+ PN   Y  + + + R      A  + + M + G  PD
Sbjct: 336 GVSPNKMIYAMIMDGYARGGDFTAAFKVWEDMVSAGLKPD 375



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 67/158 (42%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M+ E L  + V    +  A  K G    A+++F QI D G   + + +  +++ +A
Sbjct: 503 MFQRMKKENLAIDIVAYGALLKACCKSGAMQRAVEVFQQITDAGLKHNRITYCTMLDGWA 562

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G+  +A  +   M   G   +   Y   IK    + D       +  + L  M  K +
Sbjct: 563 RKGELSKARDLLKDMQKHGFHLDTICYTSFIKACFRSGDTE-----EVTETLAVMREKKL 617

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             NA TYT +   ++ A   D+A    +Q KA G   D
Sbjct: 618 EVNARTYTTLIHGWLAAADPDQAISCYEQAKASGLQLD 655



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 55/109 (50%), Gaps = 5/109 (4%)

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
           P+V  +T++I AYA A   + A+     ML+ G+  N   +  +I G A+A +  A    
Sbjct: 164 PNVHIYTSLIHAYAEARDMEGAVACTEEMLSQGIQLNEAVFCSIISGYASAGNNEA---- 219

Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
            A+ +  +   + + P    Y ++ +A+ +A  ++    LL QM+ +GF
Sbjct: 220 -AEHWFEKFKAENLVPGGIVYNSIVQAYCQAGNMETVEALLAQMEEEGF 267



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 63/132 (47%), Gaps = 5/132 (3%)

Query: 95  DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           +  ++ G   +A  +F ++K +    D+VA+ A+++A   +G  + A+ VF ++  +G+ 
Sbjct: 489 EGYARAGDVEKAFGMFQRMKKENLAIDIVAYGALLKACCKSGAMQRAVEVFQQITDAGLK 548

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
            N  TY  ++ G A   +     L  A+  L +M   G   +   YT+  +A  R+   +
Sbjct: 549 HNRITYCTMLDGWARKGE-----LSKARDLLKDMQKHGFHLDTICYTSFIKACFRSGDTE 603

Query: 215 EARGLLQQMKAK 226
           E    L  M+ K
Sbjct: 604 EVTETLAVMREK 615



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/170 (22%), Positives = 74/170 (43%), Gaps = 9/170 (5%)

Query: 80  KMRTEGLT-NNAV--KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
           +M ++G+  N AV   +    +  G    A   F + K +  +P  + + ++++AY  AG
Sbjct: 191 EMLSQGIQLNEAVFCSIISGYASAGNNEAAEHWFEKFKAENLVPGGIVYNSIVQAYCQAG 250

Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196
             +    +  +M   G   N   Y  ++ G A   D   K L     +   +   G+ P 
Sbjct: 251 NMETVEALLAQMEEEGFQGNLGLYTTVLNGFAEIRD-EEKCL----SFFHRLKACGLSPT 305

Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
           A TY  + + F +A  + +A  +L++M   G  P+ K +   ++D   +G
Sbjct: 306 AATYGCIVKLFTKAGNMAKALDILEEMDKHGVSPN-KMIYAMIMDGYARG 354



 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 3/100 (3%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F ++   GL +N +    M D  ++ G   +A  L   ++  G   D + +T+ I+A 
Sbjct: 537 EVFQQITDAGLKHNRITYCTMLDGWARKGELSKARDLLKDMQKHGFHLDTICYTSFIKAC 596

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172
             +G  +E       M    +  NA TY  LI G  AAAD
Sbjct: 597 FRSGDTEEVTETLAVMREKKLEVNARTYTTLIHGWLAAAD 636


>gi|224056220|ref|XP_002298762.1| predicted protein [Populus trichocarpa]
 gi|222846020|gb|EEE83567.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 76/159 (47%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+  +M   G + + V    +  A ++DGL  EA++L  Q+ + G   DV  +T ++  +
Sbjct: 160 EVLREMEVNGCSPSIVTYNSLISAYARDGLLKEAMELKNQMVEGGINLDVFTYTTLLSGF 219

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             AG+ + A+RVF  M A+G  PN  T+  LIK       GN     +  K   E+    
Sbjct: 220 VRAGKDESAMRVFAEMRAAGCKPNICTFNALIK-----MHGNRGKFAEMMKVFEEIKNSC 274

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             P+  T+  +   F +     E  G+ ++MK  GFVP+
Sbjct: 275 CVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPE 313



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 87/181 (48%), Gaps = 14/181 (7%)

Query: 71  PRN-LQEIFHKMRTEGL-----TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVA 124
           P N ++ +F  M+  G+     T N   +     +  L  EA  +F  +K  G +PD V 
Sbjct: 84  PWNKIKGLFEGMKNAGVLPDEYTYNT--LITCCRRGSLHEEAAAVFKDMKSMGFVPDKVT 141

Query: 125 HTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKY 184
           + A+++ Y  + + KEA+ V   M  +G +P+  TY  LI   A A DG   +L +A + 
Sbjct: 142 YNALLDVYGKSRRTKEAMEVLREMEVNGCSPSIVTYNSLIS--AYARDG---LLKEAMEL 196

Query: 185 LMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRG 244
             +MV  G+  +  TYT +   FVRA K + A  +  +M+A G  P+      ALI   G
Sbjct: 197 KNQMVEGGINLDVFTYTTLLSGFVRAGKDESAMRVFAEMRAAGCKPN-ICTFNALIKMHG 255

Query: 245 Q 245
            
Sbjct: 256 N 256



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 74/158 (46%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F  M++ G   + V    + D   K   T EA+++  +++  G  P +V + ++I AYA
Sbjct: 126 VFKDMKSMGFVPDKVTYNALLDVYGKSRRTKEAMEVLREMEVNGCSPSIVTYNSLISAYA 185

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G  KEA+ +  +M+  G+  + +TY  L+ G   A    +     A +   EM   G 
Sbjct: 186 RDGLLKEAMELKNQMVEGGINLDVFTYTTLLSGFVRAGKDES-----AMRVFAEMRAAGC 240

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +PN  T+ A+ +      K  E   + +++K    VPD
Sbjct: 241 KPNICTFNALIKMHGNRGKFAEMMKVFEEIKNSCCVPD 278



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 70/153 (45%), Gaps = 7/153 (4%)

Query: 97  LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
           L K+G    A  L   +   G   DV A+T++I A  S G+ +EA+ VF +M   G  P 
Sbjct: 8   LGKEGKVSVAASLLNDLHKDGFGLDVYAYTSLITACVSNGRYREAVMVFKKMEEEGCKPT 67

Query: 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLME-MVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
             TY V++           KI G     L E M   G+ P+  TY  +     R    +E
Sbjct: 68  LITYNVILNVYGKMGMPWNKIKG-----LFEGMKNAGVLPDEYTYNTLITCCRRGSLHEE 122

Query: 216 ARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFR 248
           A  + + MK+ GFVPD K    AL+D  G+  R
Sbjct: 123 AAAVFKDMKSMGFVPD-KVTYNALLDVYGKSRR 154



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 5/109 (4%)

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
           ++  +I  KG  PD +++  VI AY   G+ KEA R+F  M  SG+ P+  TY   +   
Sbjct: 510 EVLKEILAKGIKPDTISYNTVIFAYCRNGRMKEASRIFSEMRESGLVPDVITYNTFVASY 569

Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
           AA +     +  DA   +  M+  G +PN  TY +V + + +    D+A
Sbjct: 570 AADS-----MFEDAIDVVRYMIKHGCKPNQNTYNSVVDGYCKHNHRDDA 613



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 71/160 (44%), Gaps = 10/160 (6%)

Query: 77  IFHKMRTEGLTNNAVKMFDALSK----DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +F +MR  G   N +  F+AL K     G   E +++F +IK+   +PD+V    ++  +
Sbjct: 231 VFAEMRAAGCKPN-ICTFNALIKMHGNRGKFAEMMKVFEEIKNSCCVPDIVTWNTLLAVF 289

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G   E   VF  M  +G  P   TY  LI   +     +  +  D  K ++E    G
Sbjct: 290 GQNGMDSEVSGVFKEMKRAGFVPERDTYNTLISAYSRCGSFDQAM--DIYKRMLE---AG 344

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           + P+  TY AV  A  R    +++  +  +MK     P+E
Sbjct: 345 ITPDLSTYNAVLAALARGGLWEQSEKIFAEMKDGRCKPNE 384



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 74/153 (48%), Gaps = 8/153 (5%)

Query: 74  LQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           + ++F +++      + V    +     ++G+  E   +F ++K  G +P+   +  +I 
Sbjct: 263 MMKVFEEIKNSCCVPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERDTYNTLIS 322

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
           AY+  G   +A+ ++ RML +G+ P+  TY  +   LAA A G   +   ++K   EM  
Sbjct: 323 AYSRCGSFDQAMDIYKRMLEAGITPDLSTYNAV---LAALARGG--LWEQSEKIFAEMKD 377

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
              +PN  TY ++  A+   +++     L +++
Sbjct: 378 GRCKPNELTYCSLLHAYANGKEIGRMLALAEEI 410



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 5/134 (3%)

Query: 98  SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA 157
           SK  L  EA   F ++K KG  PD+    A++  Y       +   +   M  SG  P+ 
Sbjct: 430 SKCDLLVEAEVAFLELKRKGFSPDLSTLNAMLSIYGRRQMFTKTNEILNFMNESGFTPSL 489

Query: 158 YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
            TY  L+          ++    +++ L E++ KG++P+  +Y  V  A+ R  ++ EA 
Sbjct: 490 ATYNSLM-----YMHSRSENFERSEEVLKEILAKGIKPDTISYNTVIFAYCRNGRMKEAS 544

Query: 218 GLLQQMKAKGFVPD 231
            +  +M+  G VPD
Sbjct: 545 RIFSEMRESGLVPD 558



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/188 (21%), Positives = 74/188 (39%), Gaps = 35/188 (18%)

Query: 77  IFHKMRTEGLT---NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M+  G     +    +  A S+ G   +A+ ++ ++ + G  PD+  + AV+ A A
Sbjct: 301 VFKEMKRAGFVPERDTYNTLISAYSRCGSFDQAMDIYKRMLEAGITPDLSTYNAVLAALA 360

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTY-------------------------------AV 162
             G  +++ ++F  M      PN  TY                               AV
Sbjct: 361 RGGLWEQSEKIFAEMKDGRCKPNELTYCSLLHAYANGKEIGRMLALAEEICSGVIEPHAV 420

Query: 163 LIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
           L+K L    +    +L +A+   +E+  KG  P+  T  A+   + R Q   +   +L  
Sbjct: 421 LLKTL-VLVNSKCDLLVEAEVAFLELKRKGFSPDLSTLNAMLSIYGRRQMFTKTNEILNF 479

Query: 223 MKAKGFVP 230
           M   GF P
Sbjct: 480 MNESGFTP 487



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/96 (27%), Positives = 53/96 (55%), Gaps = 3/96 (3%)

Query: 74  LQEIFHK-MRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           L+EI  K ++ + ++ N V    A  ++G   EA ++F+++++ G +PDV+ +   + +Y
Sbjct: 512 LKEILAKGIKPDTISYNTVIF--AYCRNGRMKEASRIFSEMRESGLVPDVITYNTFVASY 569

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
           A+    ++A+ V   M+  G  PN  TY  ++ G  
Sbjct: 570 AADSMFEDAIDVVRYMIKHGCKPNQNTYNSVVDGYC 605


>gi|414878622|tpg|DAA55753.1| TPA: hypothetical protein ZEAMMB73_281441 [Zea mays]
          Length = 573

 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 83/180 (46%), Gaps = 23/180 (12%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVK--MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           D  N +  FH M   GL++  V   + +   K G   EA +LF Q+ + G  PDVVA+T 
Sbjct: 381 DMHNARLWFHDMVERGLSDVIVYTVLMNGYCKVGRLQEACELFVQMINLGIKPDVVAYTV 440

Query: 128 VIEAY-------ASAGQGKEALRVFMR---------MLASGVAPNAYTYAVLIKGLAAAA 171
           +++ +          G  KE    F+R         M    + P+   Y VLI G     
Sbjct: 441 LLDGHLKETLQQGWQGIAKERRTFFLRTKHKVLLNSMKDMEIEPDVTCYTVLIDGRC--- 497

Query: 172 DGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              A+ L +A+    EM+ KG+ P+  TYTA+   +    ++ +A  L Q+M AKG  PD
Sbjct: 498 --KAEYLEEARGLFDEMLAKGLIPDVHTYTALINGYCSQGEIAKAEDLFQEMIAKGMKPD 555



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 74/154 (48%), Gaps = 8/154 (5%)

Query: 78  FHKMRTEGLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F K R  G+  + V      DA  K G  +EA++L  ++     +PD + +T +I  Y  
Sbjct: 144 FQKFRDLGVHLDGVLYNIAMDAYCKLGNMNEAVKLLNEMMAGSLVPDKIHYTCLINGYCL 203

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            G+ + A +VF  ML + + P+  TY +L  G   + +G    + D  +++M+   +G+ 
Sbjct: 204 KGETENAWQVFEEMLKANIKPDVVTYNILASGY--SRNGLVMKVFDILEHMMD---QGLE 258

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
           PN+ TY      F R   + EA  L   ++ +G 
Sbjct: 259 PNSLTYGIAIAGFCRGGNLSEAEVLFNIVEERGI 292



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 5/104 (4%)

Query: 109 LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
           L   +KD    PDV  +T +I+    A   +EA  +F  MLA G+ P+ +TY  LI G  
Sbjct: 473 LLNSMKDMEIEPDVTCYTVLIDGRCKAEYLEEARGLFDEMLAKGLIPDVHTYTALINGYC 532

Query: 169 AAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +  +     +  A+    EM+ KGM+P+  +++ + +  +R +K
Sbjct: 533 SQGE-----IAKAEDLFQEMIAKGMKPDVLSFSVLHKRTLRHEK 571



 Score = 55.8 bits (133), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/154 (23%), Positives = 66/154 (42%), Gaps = 8/154 (5%)

Query: 81  MRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ 137
           M + G+  N      +   L K G+  E +  F + +D G   D V +   ++AY   G 
Sbjct: 112 MVSHGIEINCYIVAYLLQCLRKLGMVSEVIVHFQKFRDLGVHLDGVLYNIAMDAYCKLGN 171

Query: 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA 197
             EA+++   M+A  + P+   Y  LI G     +       +A +   EM+   ++P+ 
Sbjct: 172 MNEAVKLLNEMMAGSLVPDKIHYTCLINGYCLKGETE-----NAWQVFEEMLKANIKPDV 226

Query: 198 GTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            TY  +   + R   V +   +L+ M  +G  P+
Sbjct: 227 VTYNILASGYSRNGLVMKVFDILEHMMDQGLEPN 260



 Score = 53.1 bits (126), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 81/189 (42%), Gaps = 18/189 (9%)

Query: 73  NLQE---IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           NL E   +F+ +   G+ N  V    M       G T  A  LF ++  +G+M D ++ +
Sbjct: 276 NLSEAEVLFNIVEERGIDNINVLYGSMVCGYLHSGWTDHAYMLFLRVAKQGNMVDRLSCS 335

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
            +I       +  EA  V   ML   V P+  +Y+ LI       D     + +A+ +  
Sbjct: 336 KLINGLCRDEKVGEASTVCKMMLEKNVVPDVISYSKLISAYCQTRD-----MHNARLWFH 390

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKR--- 243
           +MV +G+  +   YT +   + +  ++ EA  L  QM   G  PD  A    L+D     
Sbjct: 391 DMVERGL-SDVIVYTVLMNGYCKVGRLQEACELFVQMINLGIKPDVVAYT-VLLDGHLKE 448

Query: 244 --GQGFRGV 250
              QG++G+
Sbjct: 449 TLQQGWQGI 457



 Score = 48.5 bits (114), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 41/73 (56%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   K     EA  LF ++  KG +PDV  +TA+I  Y S G+  +A  +F  M+A G
Sbjct: 492 LIDGRCKAEYLEEARGLFDEMLAKGLIPDVHTYTALINGYCSQGEIAKAEDLFQEMIAKG 551

Query: 153 VAPNAYTYAVLIK 165
           + P+  +++VL K
Sbjct: 552 MKPDVLSFSVLHK 564



 Score = 45.1 bits (105), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 71/160 (44%), Gaps = 8/160 (5%)

Query: 74  LQEIFH-KMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           LQEI   ++  E +  N V   D L K+    EA ++       G  PD+ +++ +I ++
Sbjct: 39  LQEISQERVPIEAMAYNMV--IDGLCKEMKLKEAEKVLEIKTRHGSAPDLYSYSYLIHSH 96

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G  ++A      M++ G+  N Y  A L++ L         ++ +   +  +    G
Sbjct: 97  CKMGNLEKAWYHVEDMVSHGIEINCYIVAYLLQCLRKLG-----MVSEVIVHFQKFRDLG 151

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           +  +   Y    +A+ +   ++EA  LL +M A   VPD+
Sbjct: 152 VHLDGVLYNIAMDAYCKLGNMNEAVKLLNEMMAGSLVPDK 191


>gi|356561776|ref|XP_003549154.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 567

 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 84/177 (47%), Gaps = 9/177 (5%)

Query: 67  EPTDPRNLQEIFHKMRTEG---LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVV 123
           E   P   +E+F  M+ +G   +      + D L K  L  EA+ LF  ++  G   D+V
Sbjct: 379 EVGKPLAAKELFITMKDQGQVPILQTCAVVLDGLYKCWLDSEAMTLFRAMEKSGLDLDIV 438

Query: 124 AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQK 183
            +  +++     G+  +A ++   +L  G+  ++YT+ ++IKGL         +L DA++
Sbjct: 439 IYNIMLDGMCKMGKLNDARKLLSFVLVKGLKIDSYTWNIMIKGLCREG-----LLDDAEE 493

Query: 184 YLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
            L +M   G  PN  +Y    +  +R   +  +R  LQ MK KGF P +    E LI
Sbjct: 494 LLRKMKENGCPPNKCSYNVFVQGLLRKYDISRSRKYLQIMKDKGF-PVDATTAELLI 549



 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 82/199 (41%), Gaps = 37/199 (18%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D     E   KM    L  N V    + D L K GL  EAL LF ++      P+VV + 
Sbjct: 168 DTSGALESLKKMVKRNLEPNVVVYNAILDGLCKRGLVGEALGLFYEMGVVNVEPNVVTYN 227

Query: 127 AVIEAYAS-AGQGKEALRVFMRMLAS-GVAPNAYTYAVLIKGLAA--------------- 169
            +I+      G  +E + +F  M+A  G+ P+  T+++L+ G                  
Sbjct: 228 CLIQGLCGEVGGWREGVGLFNEMVAEKGIVPDVQTFSILVNGFCKEGLLLRAESMVGFMI 287

Query: 170 -------AADGNAKILGDAQKYLME--------MV--GKGMRPNAGTYTAVFEAFVRAQK 212
                      N+ I G   +  ME        MV  G+G  P+  TY ++   + + +K
Sbjct: 288 RIGVELNVVTYNSLISGYCLRNRMEEAVRVFDLMVREGEGCLPSVVTYNSLIHGWCKVKK 347

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V++A  LL +M  KG  PD
Sbjct: 348 VNKAMSLLSEMVGKGLDPD 366



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 65/140 (46%), Gaps = 7/140 (5%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRML--A 150
           + +   K+GL   A  +   +   G   +VV + ++I  Y    + +EA+RVF  M+   
Sbjct: 266 LVNGFCKEGLLLRAESMVGFMIRIGVELNVVTYNSLISGYCLRNRMEEAVRVFDLMVREG 325

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
            G  P+  TY  LI G         K +  A   L EMVGKG+ P+  T+T++   F   
Sbjct: 326 EGCLPSVVTYNSLIHGWC-----KVKKVNKAMSLLSEMVGKGLDPDVFTWTSLIGGFFEV 380

Query: 211 QKVDEARGLLQQMKAKGFVP 230
            K   A+ L   MK +G VP
Sbjct: 381 GKPLAAKELFITMKDQGQVP 400



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 89  NAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRM 148
           N + + + L K G T  AL+   ++  +   P+VV + A+++     G   EAL +F  M
Sbjct: 155 NGLCIVNGLCKIGDTSGALESLKKMVKRNLEPNVVVYNAILDGLCKRGLVGEALGLFYEM 214

Query: 149 LASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFV 208
               V PN  TY  LI+GL     G  + +G   + + E   KG+ P+  T++ +   F 
Sbjct: 215 GVVNVEPNVVTYNCLIQGLCGEVGGWREGVGLFNEMVAE---KGIVPDVQTFSILVNGFC 271

Query: 209 R 209
           +
Sbjct: 272 K 272


>gi|357517409|ref|XP_003628993.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523015|gb|AET03469.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 819

 Score = 76.6 bits (187), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 49/149 (32%), Positives = 75/149 (50%), Gaps = 6/149 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +  +L K    H++ ++F  +   G + DV  +   I AY   G+  EA+ +F++M   G
Sbjct: 212 LMSSLVKSNELHKSFRVFDAMCRGGVLIDVYTYATAINAYCKGGKIDEAVGLFLKMGEGG 271

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V PN  TY  LI GL  +       L +A  +   MV   + P+  TY  +    V+ +K
Sbjct: 272 VLPNVVTYNNLIDGLCKSGR-----LEEALMFKGRMVENKVNPSLVTYGILVNGLVKFEK 326

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALID 241
            DEA  +L +M +KGF P+E  V  ALID
Sbjct: 327 FDEANSVLVEMYSKGFSPNE-FVFNALID 354



 Score = 73.2 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/141 (29%), Positives = 72/141 (51%), Gaps = 11/141 (7%)

Query: 102 LTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYA 161
           L  EA  +F +++++G MP+V  +TA+I  Y   GQ  +   +   M ++ + PN  TY 
Sbjct: 677 LVEEAKGIFEEMRNEGLMPNVFCYTALIGGYCKLGQMDQIESILQEMTSNCIQPNKITYT 736

Query: 162 VLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221
           ++I G      GN K   +A K L EM+  G+ P+  TYT + + + +  +++E      
Sbjct: 737 IMIDGYCKM--GNTK---EATKLLNEMIANGISPDTVTYTVLQKGYCKENELEET----- 786

Query: 222 QMKAKGFVPDEKAVKEALIDK 242
            ++    VP E+     L+DK
Sbjct: 787 -LQGDTAVPLEEITYTTLVDK 806



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/137 (29%), Positives = 70/137 (51%), Gaps = 5/137 (3%)

Query: 95  DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           +A  K G   EA+ LF ++ + G +P+VV +  +I+    +G+ +EAL    RM+ + V 
Sbjct: 249 NAYCKGGKIDEAVGLFLKMGEGGVLPNVVTYNNLIDGLCKSGRLEEALMFKGRMVENKVN 308

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
           P+  TY +L+ GL        +   +A   L+EM  KG  PN   + A+ + + R   +D
Sbjct: 309 PSLVTYGILVNGLV-----KFEKFDEANSVLVEMYSKGFSPNEFVFNALIDGYSRKGNMD 363

Query: 215 EARGLLQQMKAKGFVPD 231
           +A  +   M  KG  P+
Sbjct: 364 DALRVRDDMTLKGLKPN 380



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 41/166 (24%), Positives = 76/166 (45%), Gaps = 8/166 (4%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F KM   G+  N V    + D L K G   EAL    ++ +    P +V +  ++    
Sbjct: 263 LFLKMGEGGVLPNVVTYNNLIDGLCKSGRLEEALMFKGRMVENKVNPSLVTYGILVNGLV 322

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
              +  EA  V + M + G +PN + +  LI G +   +     + DA +   +M  KG+
Sbjct: 323 KFEKFDEANSVLVEMYSKGFSPNEFVFNALIDGYSRKGN-----MDDALRVRDDMTLKGL 377

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
           +PNA T+  + + F R  ++++A  +L+ + +     +E A    L
Sbjct: 378 KPNAVTHNTLLQGFCRTNQMEQAEQVLEYLLSNVLSVNEDACSYVL 423



 Score = 60.1 bits (144), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 36/137 (26%), Positives = 67/137 (48%), Gaps = 7/137 (5%)

Query: 87  TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFM 146
           T+NA  +   L + G   E   +  ++ ++G + D +++  +I     +G+ +EA ++  
Sbjct: 489 TSNA--LLYGLCERGNMEEVFPVCKEMVERGLVLDGISYNTLIFGCCKSGKIEEAFKLKE 546

Query: 147 RMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEA 206
           +M+  G  P+ YTY  L+KGLA         + D  + L E    G+ PN  TY  + E 
Sbjct: 547 KMMKQGFKPDTYTYNFLMKGLADKGK-----MDDVGRVLHEAKDHGVVPNIYTYALMLEG 601

Query: 207 FVRAQKVDEARGLLQQM 223
           +  A ++D A  L  ++
Sbjct: 602 YCNADRIDNAVSLFNKL 618



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 43/195 (22%), Positives = 79/195 (40%), Gaps = 36/195 (18%)

Query: 73  NLQEIF---HKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           N++E+F    +M   GL  + +    +     K G   EA +L  ++  +G  PD   + 
Sbjct: 502 NMEEVFPVCKEMVERGLVLDGISYNTLIFGCCKSGKIEEAFKLKEKMMKQGFKPDTYTYN 561

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKG-------------------- 166
            +++  A  G+  +  RV       GV PN YTYA++++G                    
Sbjct: 562 FLMKGLADKGKMDDVGRVLHEAKDHGVVPNIYTYALMLEGYCNADRIDNAVSLFNKLVYN 621

Query: 167 ----------LAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
                     +  AA   A    +A K    M    + P   TY+++         V+EA
Sbjct: 622 KVELSYVVYNILIAAHSKAGNFTEAFKLRDAMRSSNIHPTIFTYSSIIHGMCCNDLVEEA 681

Query: 217 RGLLQQMKAKGFVPD 231
           +G+ ++M+ +G +P+
Sbjct: 682 KGIFEEMRNEGLMPN 696



 Score = 44.3 bits (103), Expect = 0.048,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA  +  ++  KG  P+     A+I+ Y+  G   +ALRV   M   G+ PNA T+  L+
Sbjct: 329 EANSVLVEMYSKGFSPNEFVFNALIDGYSRKGNMDDALRVRDDMTLKGLKPNAVTHNTLL 388

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           +G           +  A++ L  ++   +  N    + V     ++ K D A  +++ +
Sbjct: 389 QGFCRTNQ-----MEQAEQVLEYLLSNVLSVNEDACSYVLHLLCKSSKFDSALKIVKAL 442



 Score = 43.9 bits (102), Expect = 0.061,   Method: Composition-based stats.
 Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 6/137 (4%)

Query: 96  ALSKDGLTHEALQLFAQIKDK-GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
            L K G   EA+ L+ ++ DK G   +     A++      G  +E   V   M+  G+ 
Sbjct: 460 GLCKCGKHLEAIDLWFRLADKKGLAANTTTSNALLYGLCERGNMEEVFPVCKEMVERGLV 519

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
            +  +Y  LI G   +       + +A K   +M+ +G +P+  TY  + +      K+D
Sbjct: 520 LDGISYNTLIFGCCKSGK-----IEEAFKLKEKMMKQGFKPDTYTYNFLMKGLADKGKMD 574

Query: 215 EARGLLQQMKAKGFVPD 231
           +   +L + K  G VP+
Sbjct: 575 DVGRVLHEAKDHGVVPN 591


>gi|255582603|ref|XP_002532083.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528243|gb|EEF30297.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 841

 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 93/188 (49%), Gaps = 10/188 (5%)

Query: 52  KLPPPYDPFKKVVDEEPTDPR--NLQEIFHKMRTEGLTNNA---VKMFDALSKDGLTHEA 106
           K+ P +  F  +VD      R     +I+ +M+  GL ++A   V + ++ +K G    A
Sbjct: 353 KIRPSFGIFSSLVDSMGKSGRLDTSMKIYMEMQGFGLRSSASMYVSLIESYTKAGKLDTA 412

Query: 107 LQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKG 166
           L+L+ ++K  G  P+   +T +IE++A +G+   A  +F  M  +G  P   TY+ L++ 
Sbjct: 413 LRLWDEMKKAGFRPNYGLYTLIIESHAKSGKLDIATSIFKDMDKAGFLPTPSTYSCLLEM 472

Query: 167 LAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK 226
            AA+   ++     A K    M   G++P   TYTA+       + VD A  +L +MKA 
Sbjct: 473 HAASGQVDS-----AMKLYNSMTNAGLKPGLSTYTALLTLLASKKLVDVAAKILLEMKAM 527

Query: 227 GFVPDEKA 234
           GF  D  A
Sbjct: 528 GFSVDVSA 535



 Score = 67.0 bits (162), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 78/163 (47%), Gaps = 8/163 (4%)

Query: 71  PRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           P    EI+  M+    + +A     M  +L+K G    A +LF ++K++   P     ++
Sbjct: 304 PYKAFEIYESMQAAQCSLDASTYELMIPSLAKSGRLDVAFKLFQEMKERKIRPSFGIFSS 363

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           ++++   +G+   +++++M M   G+  +A  Y  LI+    A       L  A +   E
Sbjct: 364 LVDSMGKSGRLDTSMKIYMEMQGFGLRSSASMYVSLIESYTKAGK-----LDTALRLWDE 418

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           M   G RPN G YT + E+  ++ K+D A  + + M   GF+P
Sbjct: 419 MKKAGFRPNYGLYTLIIESHAKSGKLDIATSIFKDMDKAGFLP 461



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 74/158 (46%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
            F K++  G    T     +  +    GL ++A +++  ++      D   +  +I + A
Sbjct: 275 CFKKVQDSGCKIDTQTYNALITSFLNKGLPYKAFEIYESMQAAQCSLDASTYELMIPSLA 334

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            +G+   A ++F  M    + P+   ++ L+  +     G +  L  + K  MEM G G+
Sbjct: 335 KSGRLDVAFKLFQEMKERKIRPSFGIFSSLVDSM-----GKSGRLDTSMKIYMEMQGFGL 389

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           R +A  Y ++ E++ +A K+D A  L  +MK  GF P+
Sbjct: 390 RSSASMYVSLIESYTKAGKLDTALRLWDEMKKAGFRPN 427


>gi|125557843|gb|EAZ03379.1| hypothetical protein OsI_25524 [Oryza sativa Indica Group]
          Length = 716

 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F + +++G+  N V    + D   K G   EA  +  ++  KG  P+V    ++++A  
Sbjct: 521 LFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALV 580

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            A +  EAL  F  M      PN YTY++LI GL      N   +     +  +M  +G+
Sbjct: 581 KAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFV-----FWQDMQKQGL 635

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            PN  TYT +     +   + +A  L ++ KA G +PD
Sbjct: 636 VPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPD 673



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 11/145 (7%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M D L K     EA ++F     +G  PD V + ++I+     GQ  EA R+F +ML +G
Sbjct: 295 MVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAG 354

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILG---DAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209
              N   Y  LI+        N  I G   D  K   E++ +G +P+        +   +
Sbjct: 355 HNANPVVYTSLIR--------NFFIHGRKEDGHKVFKELIRRGCKPDLTLLNTYMDCVFK 406

Query: 210 AQKVDEARGLLQQMKAKGFVPDEKA 234
           A +V++ R + + +++ GF+PD ++
Sbjct: 407 AGEVEKGRMIFEDIRSYGFLPDVRS 431



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L+K     EA  LF + K KG   +VV ++++I+ +   G+  EA  +   M+  G
Sbjct: 505 IVDGLAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKG 564

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN YT+  L+  L  A + N     +A      M      PN  TY+ +     R QK
Sbjct: 565 LTPNVYTWNSLLDALVKAEEIN-----EALVCFQSMKEMKCPPNTYTYSILINGLCRVQK 619

Query: 213 VDEARGLLQQMKAKGFVPD 231
            ++A    Q M+ +G VP+
Sbjct: 620 YNKAFVFWQDMQKQGLVPN 638



 Score = 66.6 bits (161), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 80/159 (50%), Gaps = 9/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           + FH+++ +GL  + V    M   L K G   EA +LFAQ++ +  +P   A+  +I  Y
Sbjct: 136 KFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGY 195

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
            SAG+ ++A ++  R+   G  P+  ++  ++  L     G  + + +A   L E++ K 
Sbjct: 196 GSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCL-----GKKRKVDEALS-LFEVMKKD 249

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             PN+ TY  + +      +V+EA  +L +M+     P+
Sbjct: 250 AEPNSSTYNIIIDMLCLGGRVEEAYRILDEMEHASLFPN 288



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 72/151 (47%), Gaps = 6/151 (3%)

Query: 95  DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           D + K G   +   +F  I+  G +PDV +++ +I     AGQ +E   +F  M   G A
Sbjct: 402 DCVFKAGEVEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFA 461

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
            +A  Y  ++ G   +       +  A + L EM  K ++P   TY A+ +   +  ++D
Sbjct: 462 LDARAYNAVVDGFCKSGK-----VHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLD 516

Query: 215 EARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
           EA  L ++ K+KG +     +  +LID  G+
Sbjct: 517 EAYMLFEEAKSKG-IELNVVLYSSLIDGFGK 546



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 64/130 (49%), Gaps = 5/130 (3%)

Query: 95  DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           D   K G    A + F ++K +G  PD V++T++I     AG+  EA  +F +M A    
Sbjct: 123 DCFGKAGNVDMACKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSV 182

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
           P AY Y  +I G      G+A    DA K L  +  +G  P+  ++ ++     + +KVD
Sbjct: 183 PCAYAYNTMIMGY-----GSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVD 237

Query: 215 EARGLLQQMK 224
           EA  L + MK
Sbjct: 238 EALSLFEVMK 247



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 74/160 (46%), Gaps = 12/160 (7%)

Query: 77  IFHKMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           IF  +R+ G      +   +   L+K G   E   +F  +K +G   D  A+ AV++ + 
Sbjct: 416 IFEDIRSYGFLPDVRSYSILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFC 475

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKI--LGDAQKYLMEMVGK 191
            +G+  +A  +   M    V P   TY  ++ GL       AKI  L +A     E   K
Sbjct: 476 KSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGL-------AKIDRLDEAYMLFEEAKSK 528

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G+  N   Y+++ + F +  ++DEA  +L++M  KG  P+
Sbjct: 529 GIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPN 568



 Score = 57.0 bits (136), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 82/200 (41%), Gaps = 46/200 (23%)

Query: 72  RNLQE---IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAH 125
           R L+E   IF      G   + V    + D L K G   EA +LF ++ D GH  + V +
Sbjct: 303 RKLEEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKMLDAGHNANPVVY 362

Query: 126 TAVIEAYASAGQGKEALRVFMRMLASGVAP-----NAY---------------------- 158
           T++I  +   G+ ++  +VF  ++  G  P     N Y                      
Sbjct: 363 TSLIRNFFIHGRKEDGHKVFKELIRRGCKPDLTLLNTYMDCVFKAGEVEKGRMIFEDIRS 422

Query: 159 --------TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
                   +Y++LI GL  A  G A+   +       M  +G   +A  Y AV + F ++
Sbjct: 423 YGFLPDVRSYSILIHGLTKA--GQAR---ETSNIFHAMKQQGFALDARAYNAVVDGFCKS 477

Query: 211 QKVDEARGLLQQMKAKGFVP 230
            KV +A  +L++MK K   P
Sbjct: 478 GKVHKAYEILEEMKEKCVQP 497



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 5/125 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           AL+L  Q+++ G+   V   T ++ A A  GQ  +AL +   +  S + P+   Y V I 
Sbjct: 64  ALELLRQMQEVGYEVGVHLFTTLVRALAREGQVADALALVDEVKGSCLEPDIVLYNVCID 123

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
               A  GN  +   A K+  E+  +G++P+  +YT++     +A ++ EA  L  QM+A
Sbjct: 124 CFGKA--GNVDM---ACKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEA 178

Query: 226 KGFVP 230
           +  VP
Sbjct: 179 ERSVP 183



 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 5/113 (4%)

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
           P   A+T +I A A A + + AL +  +M   G     + +  L++ LA         + 
Sbjct: 43  PAFSAYTVLIGALAEARRPERALELLRQMQEVGYEVGVHLFTTLVRALAREGQ-----VA 97

Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           DA   + E+ G  + P+   Y    + F +A  VD A     ++KA+G  PD+
Sbjct: 98  DALALVDEVKGSCLEPDIVLYNVCIDCFGKAGNVDMACKFFHELKAQGLKPDD 150



 Score = 41.2 bits (95), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 21/78 (26%), Positives = 43/78 (55%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L +    ++A   +  ++ +G +P+VV +T +I   A  G   +A  +F R  A+G
Sbjct: 610 LINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANG 669

Query: 153 VAPNAYTYAVLIKGLAAA 170
             P+A ++  LI+G++ A
Sbjct: 670 GIPDAASFNALIEGMSNA 687


>gi|384251704|gb|EIE25181.1| TPR-like protein [Coccomyxa subellipsoidea C-169]
          Length = 905

 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 9/174 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           + ++ MR +G   N V    + D   K GL  + +++   +K +G  P +  +  +I A 
Sbjct: 266 DTYNHMRQDGACPNVVTYNTLIDVYGKMGLWEQGIKVLTLMKTEGVEPVLRTYNTLIIAC 325

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              GQ +EA+ V+ RML  G +PNA TY  LI     +A G A  L    +   EMV KG
Sbjct: 326 NMCGQPREAMAVYKRMLDEGYSPNATTYNALI-----SAYGKAGQLDKVMEVFQEMVHKG 380

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
              +  TY+++  A  +A + + A  L  +M  +G +P+      +LI    QG
Sbjct: 381 CERSVITYSSLISACEKAGQWELALELFNEMAGEGCIPN-TVTYNSLITACAQG 433



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 80/174 (45%), Gaps = 9/174 (5%)

Query: 71  PRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           PR    ++ +M  EG + NA     +  A  K G   + +++F ++  KG    V+ +++
Sbjct: 331 PREAMAVYKRMLDEGYSPNATTYNALISAYGKAGQLDKVMEVFQEMVHKGCERSVITYSS 390

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
           +I A   AGQ + AL +F  M   G  PN  TY  LI   A  A         A +   +
Sbjct: 391 LISACEKAGQWELALELFNEMAGEGCIPNTVTYNSLITACAQGAQWE-----KASEVFEQ 445

Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           M   G  P+  T+TA+  ++ +  +   A G  +QM+ +   PD   V  A+ID
Sbjct: 446 MQKGGCTPDVVTFTALISSYEKGGQWRRALGAYEQMRLQRCKPD-AIVFNAIID 498



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 3/95 (3%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F++M  EG   N V    +  A ++     +A ++F Q++  G  PDVV  TA+I +Y
Sbjct: 406 ELFNEMAGEGCIPNTVTYNSLITACAQGAQWEKASEVFEQMQKGGCTPDVVTFTALISSY 465

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
              GQ + AL  + +M      P+A  +  +I  L
Sbjct: 466 EKGGQWRRALGAYEQMRLQRCKPDAIVFNAIIDTL 500



 Score = 38.1 bits (87), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 11/140 (7%)

Query: 97  LSKDGLTHEALQLFAQIK--DKGH----MPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           LSK GL   A+++F  ++  D  H    + DV  +TA+I           A+ +   M  
Sbjct: 179 LSKAGLGFRAVEIFEWLRNLDANHPLASLCDVYTYTAMISMCIYQQDVDRAMDLAKEMRV 238

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
             +  N +TY  L+        GN  +  D   ++ +    G  PN  TY  + + + + 
Sbjct: 239 RNIERNVHTYTALMN--VCIKCGNCPLALDTYNHMRQ---DGACPNVVTYNTLIDVYGKM 293

Query: 211 QKVDEARGLLQQMKAKGFVP 230
              ++   +L  MK +G  P
Sbjct: 294 GLWEQGIKVLTLMKTEGVEP 313


>gi|356551783|ref|XP_003544253.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 576

 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 76/159 (47%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F++MR +G   + V    +     K G   EA++   ++   G  PDV++H  ++ + 
Sbjct: 237 KLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEAIRFLKKLPSYGCQPDVISHNMILRSL 296

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
            S G+  +A+++   ML  G  P+  T+ +LI  L         +LG A   L  M   G
Sbjct: 297 CSGGRWMDAMKLLATMLRKGCLPSVVTFNILINFLCQKG-----LLGKALNVLEMMPKHG 351

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             PN+ ++  + + F   + +D A   L+ M ++G  PD
Sbjct: 352 HTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPD 390



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 83/169 (49%), Gaps = 14/169 (8%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           I  ++ ++G + + +    + D L K G    A++L  ++  KG  PD++  T+V+   +
Sbjct: 413 ILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLS 472

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G+ +EA++ F  +    + PNA+ Y  +I GL  +   +  I      +L +MV KG 
Sbjct: 473 REGKVREAMKFFHYLKRFAIRPNAFIYNSIITGLCKSQQTSLAI-----DFLADMVAKGC 527

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDK 242
           +P   TYT + +        ++A  L  ++ ++G       VK +L++K
Sbjct: 528 KPTEATYTTLIKGITYEGLAEDASKLSNELYSRGL------VKRSLVEK 570



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 76/155 (49%), Gaps = 10/155 (6%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DA  K+    +A++LF ++++KG  PDVV +  +I+ +   G+  EA+R   ++ + G
Sbjct: 222 LIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEAIRFLKKLPSYG 281

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  ++ ++++ L +          DA K L  M+ KG  P+  T+  +     +   
Sbjct: 282 CQPDVISHNMILRSLCSGGR-----WMDAMKLLATMLRKGCLPSVVTFNILINFLCQKGL 336

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGF 247
           + +A  +L+ M   G  P+ ++    +     QGF
Sbjct: 337 LGKALNVLEMMPKHGHTPNSRSFNPLI-----QGF 366



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 5/140 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +  AL KDG   +A+ + +Q+  KG  P ++++  VI+     G+ + A+ +   M   G
Sbjct: 397 LLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKG 456

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+  T   ++ GL  + +G  +   +A K+   +    +RPNA  Y ++     ++Q+
Sbjct: 457 LKPDLITCTSVVGGL--SREGKVR---EAMKFFHYLKRFAIRPNAFIYNSIITGLCKSQQ 511

Query: 213 VDEARGLLQQMKAKGFVPDE 232
              A   L  M AKG  P E
Sbjct: 512 TSLAIDFLADMVAKGCKPTE 531



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 71/142 (50%), Gaps = 10/142 (7%)

Query: 91  VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           ++    L ++G   E  +    + +KG  PDV+A TA+I  +   G+ K A ++   +  
Sbjct: 83  IRHLRRLIRNGELEEGSRFLEYMTNKGKSPDVIACTALIREFCKIGRTKNASQIMGILEE 142

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
           SG   +  +Y VLI G   + +     + +A + L  M   G+ PNA TY AV  +    
Sbjct: 143 SGAVIDVTSYNVLISGYCKSGE-----IEEALRVLDRM---GVSPNAATYDAVLCSLCDR 194

Query: 211 QKVDEARGLL-QQMKAKGFVPD 231
            K+ +A  +L +Q+++K + PD
Sbjct: 195 GKLKQAMQVLGRQLQSKCY-PD 215



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 12/162 (7%)

Query: 74  LQEIFHKMRTEGLTNNAVKMFDA----LSKDGLTHEALQLFA-QIKDKGHMPDVVAHTAV 128
           ++E    +   G++ NA   +DA    L   G   +A+Q+   Q++ K + PDVV  T +
Sbjct: 165 IEEALRVLDRMGVSPNAAT-YDAVLCSLCDRGKLKQAMQVLGRQLQSKCY-PDVVTCTVL 222

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I+A        +A+++F  M   G  P+  TY VLIKG           L +A ++L ++
Sbjct: 223 IDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGR-----LDEAIRFLKKL 277

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
              G +P+  ++  +  +     +  +A  LL  M  KG +P
Sbjct: 278 PSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLP 319


>gi|242064536|ref|XP_002453557.1| hypothetical protein SORBIDRAFT_04g008050 [Sorghum bicolor]
 gi|241933388|gb|EES06533.1| hypothetical protein SORBIDRAFT_04g008050 [Sorghum bicolor]
          Length = 390

 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 74/161 (45%), Gaps = 8/161 (4%)

Query: 74  LQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           +  ++ KM+  G+  +      M  +  + GL  +A +LF ++ D    PDV+ + ++I 
Sbjct: 201 MSSLYDKMKANGVAPDVFTYNIMISSFGRVGLVDKASELFEEMDDSSCKPDVITYNSMIN 260

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
                G   EA  +F  M   G  P+ +TY++LI+       G +  +  A     EM+ 
Sbjct: 261 CLGKNGDLDEAHMLFKDMQEKGYDPDVFTYSILIECF-----GKSNKVDMACSLFDEMIA 315

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +G  PN  TY  + +   R  K  EA  L + +K +G  PD
Sbjct: 316 QGCVPNIVTYNILLDCLERHGKTREAHKLYETLKQQGLAPD 356



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 5/141 (3%)

Query: 91  VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           V M +AL     T EA+ L   + +KG   DV  +  +  A     Q      ++ +M A
Sbjct: 151 VSMLEALCNAEKTAEAIDLLHMMPEKGITTDVGMYNIIFSALGKLKQVSFMSSLYDKMKA 210

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
           +GVAP+ +TY ++I        G   ++  A +   EM     +P+  TY ++     + 
Sbjct: 211 NGVAPDVFTYNIMISSF-----GRVGLVDKASELFEEMDDSSCKPDVITYNSMINCLGKN 265

Query: 211 QKVDEARGLLQQMKAKGFVPD 231
             +DEA  L + M+ KG+ PD
Sbjct: 266 GDLDEAHMLFKDMQEKGYDPD 286



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/145 (26%), Positives = 70/145 (48%), Gaps = 8/145 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F +M       + +    M + L K+G   EA  LF  +++KG+ PDV  ++ +IE +
Sbjct: 238 ELFEEMDDSSCKPDVITYNSMINCLGKNGDLDEAHMLFKDMQEKGYDPDVFTYSILIECF 297

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             + +   A  +F  M+A G  PN  TY +L+  L     G  +   +A K    +  +G
Sbjct: 298 GKSNKVDMACSLFDEMIAQGCVPNIVTYNILLDCL--ERHGKTR---EAHKLYETLKQQG 352

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEAR 217
           + P++ TY+ +     R+Q+    R
Sbjct: 353 LAPDSITYSILERLESRSQRTARIR 377



 Score = 41.2 bits (95), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 148 MLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAF 207
           M  +   P+AYTY +LI+ ++  A    K +     +L EMV KG   N   Y  V EA 
Sbjct: 1   MKQNNCDPDAYTYTILIR-MSGKAGKATKFVS----FLEEMVSKGCVLNLIAYNTVIEAL 55

Query: 208 VRAQKVDEARGLLQQMKAKGFVPDE 232
            + + VD+A  +L +M      P++
Sbjct: 56  GKNKMVDKAIFMLSKMIESDCQPNQ 80


>gi|357436823|ref|XP_003588687.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477735|gb|AES58938.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 587

 Score = 76.6 bits (187), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 77/163 (47%), Gaps = 8/163 (4%)

Query: 72  RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           ++ + ++ +M+ E +  + V    + +   +     +AL++  ++  +G  P+ + +  +
Sbjct: 271 KHAERLWEEMKNENVRPSVVTYGTLVEGYCRMRRVEKALEMVGEMTKEGIKPNAIVYNPI 330

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I+A A AG+ KEAL +  R     + P   TY  L+KG   A D     +  A K L +M
Sbjct: 331 IDALAEAGRFKEALGMMERFHVLQIGPTLSTYNSLVKGFCKAGD-----IEGASKILKKM 385

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + +G  P   TY   F  F R  KVDE   L  +M   G  PD
Sbjct: 386 ISRGFLPIPTTYNYFFRYFSRCGKVDEGMNLYTKMIESGHNPD 428



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 77/176 (43%), Gaps = 11/176 (6%)

Query: 74  LQEIFHKMR---TEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           + E FH ++   T    N+ VK F    K G    A ++  ++  +G +P    +     
Sbjct: 346 MMERFHVLQIGPTLSTYNSLVKGF---CKAGDIEGASKILKKMISRGFLPIPTTYNYFFR 402

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
            ++  G+  E + ++ +M+ SG  P+  TY +++K L          L  A +  MEM  
Sbjct: 403 YFSRCGKVDEGMNLYTKMIESGHNPDRLTYHLVLKMLCEEEK-----LELAVQVSMEMRH 457

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
           KG   +  T T +     +  K++EA    + M  +G +P     ++  ++ + QG
Sbjct: 458 KGYDMDLATSTMLTHLLCKMHKLEEAFAEFEDMIRRGIIPQYLTFQKLNVELKKQG 513


>gi|413926076|gb|AFW66008.1| hypothetical protein ZEAMMB73_411794 [Zea mays]
          Length = 633

 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 73/161 (45%), Gaps = 8/161 (4%)

Query: 74  LQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           +  ++  MR  G+  +      M  +  + GL  +A +LF +++D    PDVV + ++I 
Sbjct: 444 MSSLYDTMRANGVVPDVFTYNIMISSFGRVGLVDKASELFEEMEDGSCKPDVVTYNSMIN 503

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
                G   EA  +F  M   G  P+ +TY++LI+       G +  +  A     EMV 
Sbjct: 504 CLGKNGDLDEAHMLFKDMQEKGYDPDVFTYSILIECF-----GKSNKVDMACSLFDEMVA 558

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +G  PN  TY  + +   R  K  EA    + +K +G  PD
Sbjct: 559 QGCIPNIVTYNILLDCLERRGKTTEAHKFYETLKQQGLTPD 599



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 69/146 (47%), Gaps = 8/146 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            E+F +M       + V    M + L K+G   EA  LF  +++KG+ PDV  ++ +IE 
Sbjct: 480 SELFEEMEDGSCKPDVVTYNSMINCLGKNGDLDEAHMLFKDMQEKGYDPDVFTYSILIEC 539

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +  + +   A  +F  M+A G  PN  TY +L+  L            +A K+   +  +
Sbjct: 540 FGKSNKVDMACSLFDEMVAQGCIPNIVTYNILLDCLERRGKTT-----EAHKFYETLKQQ 594

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEAR 217
           G+ P++ TY+ +     R+Q+    R
Sbjct: 595 GLTPDSITYSILERLESRSQRTVRIR 620



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 5/141 (3%)

Query: 91  VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           V M +AL     T EA+ L   + +KG   DV  +  +  A     Q      ++  M A
Sbjct: 394 VSMLEALCNAEKTTEAIDLLHMMPEKGITTDVGMYNMIFSALGKLKQVSFMSSLYDTMRA 453

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
           +GV P+ +TY ++I        G   ++  A +   EM     +P+  TY ++     + 
Sbjct: 454 NGVVPDVFTYNIMISSF-----GRVGLVDKASELFEEMEDGSCKPDVVTYNSMINCLGKN 508

Query: 211 QKVDEARGLLQQMKAKGFVPD 231
             +DEA  L + M+ KG+ PD
Sbjct: 509 GDLDEAHMLFKDMQEKGYDPD 529



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 66/128 (51%), Gaps = 5/128 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +  +++ +++ KG+  D+ A+  ++ A A AG   +A +VF  M  +   P+AYTY +LI
Sbjct: 201 KGFEVYEKMRRKGYKLDIFAYNMLLNALAKAGMVDQAYQVFEDMKQNYCDPDAYTYTILI 260

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           + ++  A    K +      L EMV +G   N   Y  V EA  + + VDEA  +L +M 
Sbjct: 261 R-MSGKAGKTTKFVS----LLEEMVSEGCVLNLIAYNTVIEALGKNKMVDEAIFMLSKMI 315

Query: 225 AKGFVPDE 232
                P++
Sbjct: 316 ESDCRPNQ 323



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 78/190 (41%), Gaps = 40/190 (21%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMP---------DVVA 124
           +  +M +EG   N +    + +AL K+ +  EA+ + +++ +    P         DV++
Sbjct: 275 LLEEMVSEGCVLNLIAYNTVIEALGKNKMVDEAIFMLSKMIESDCRPNQFTYSIMLDVLS 334

Query: 125 -----------------------HTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYA 161
                                  ++ +I+A   +G   EA  VF RM  S    + Y + 
Sbjct: 335 TGGQLHRLNEILDICSGCLNRPVYSYLIKALCKSGHASEAHSVFCRMWNSHEKGDRYAFV 394

Query: 162 VLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221
            +++ L      NA+   +A   L  M  KG+  + G Y  +F A  + ++V     L  
Sbjct: 395 SMLEALC-----NAEKTTEAIDLLHMMPEKGITTDVGMYNMIFSALGKLKQVSFMSSLYD 449

Query: 222 QMKAKGFVPD 231
            M+A G VPD
Sbjct: 450 TMRANGVVPD 459



 Score = 45.8 bits (107), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 36/163 (22%), Positives = 63/163 (38%), Gaps = 33/163 (20%)

Query: 99  KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAY 158
           K G T + + L  ++  +G + +++A+  VIEA        EA+ +  +M+ S   PN +
Sbjct: 265 KAGKTTKFVSLLEEMVSEGCVLNLIAYNTVIEALGKNKMVDEAIFMLSKMIESDCRPNQF 324

Query: 159 TYAVLIKGL------------------------------AAAADGNAKILGDAQKYLMEM 188
           TY++++  L                              A    G+A    +A      M
Sbjct: 325 TYSIMLDVLSTGGQLHRLNEILDICSGCLNRPVYSYLIKALCKSGHA---SEAHSVFCRM 381

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
                + +   + ++ EA   A+K  EA  LL  M  KG   D
Sbjct: 382 WNSHEKGDRYAFVSMLEALCNAEKTTEAIDLLHMMPEKGITTD 424



 Score = 37.0 bits (84), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 36/160 (22%), Positives = 70/160 (43%), Gaps = 12/160 (7%)

Query: 73  NLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV-IEA 131
           +L +    +R    T  A ++  AL+ D     +   FA     G   D  ++  + +  
Sbjct: 69  DLDDYLRSLRLTLTTAEASEVMKALAPDTSLALSFFRFAATSLPGFRHDAFSYNRILVLL 128

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +++     EA+R+   M   GV  N  T  +L+ G+        + L  A K+       
Sbjct: 129 FSNRADPAEAMRLIAEMERDGVPGNISTVNLLV-GMGVEV---GRCLDLASKW------- 177

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G+R N  TY  + +A +R+++V +   + ++M+ KG+  D
Sbjct: 178 GLRLNGYTYKCLVQAHLRSREVWKGFEVYEKMRRKGYKLD 217


>gi|297800058|ref|XP_002867913.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297313749|gb|EFH44172.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 724

 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 79/172 (45%), Gaps = 12/172 (6%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F KM   G   N +    + D L K G   +A ++  ++   G  P+V  HTA+I+    
Sbjct: 298 FRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCK 357

Query: 135 AGQGKEALRVFMRMLASGV-APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            G  ++A R+F++++ S +  PN +TY  +I G           L  A+     M  +G+
Sbjct: 358 RGWTEKAFRLFLKLVRSDIYKPNVHTYTSMIGGYCKEDK-----LNRAEMLFSRMKEQGL 412

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD---EKAVKEALIDK 242
            PN  TYT +     +A   D A  L+  M  +GF P+     AV ++L  K
Sbjct: 413 FPNVNTYTTLINGHCKAGNFDRAYELMNLMDDEGFRPNIYTYNAVIDSLCKK 464



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 71/140 (50%), Gaps = 6/140 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +  AL ++GL + A+  F ++ D G  P+++  T++I+     G  K+A  +   M+ +G
Sbjct: 281 ILSALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNG 340

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM-RPNAGTYTAVFEAFVRAQ 211
             PN YT+  LI GL             A +  +++V   + +PN  TYT++   + +  
Sbjct: 341 WKPNVYTHTALIDGLCKRGWTEK-----AFRLFLKLVRSDIYKPNVHTYTSMIGGYCKED 395

Query: 212 KVDEARGLLQQMKAKGFVPD 231
           K++ A  L  +MK +G  P+
Sbjct: 396 KLNRAEMLFSRMKEQGLFPN 415



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 69/160 (43%), Gaps = 8/160 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+ +K  + GL  + V    +     K     +AL  F ++   G   D+  +  +I A+
Sbjct: 472 ELLNKAFSCGLEADGVTYTILIQEQCKQSDIKQALAFFCRMNKTGFEADMRLNNILIAAF 531

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               + KE+ R+F  +++ G+ P   TY  +I G     D +      A KY   M   G
Sbjct: 532 CRQKKMKESERLFQLVVSLGLVPTKETYTSMISGYCKEGDFDL-----ALKYFHNMKRHG 586

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
             P++ TY ++     +   VDEA  L + M  +G  P E
Sbjct: 587 CVPDSFTYGSLISGLCKKSMVDEACKLYEAMIDRGLSPPE 626



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 68/157 (43%), Gaps = 8/157 (5%)

Query: 77  IFHKMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M+ +GL    N    + +   K G    A +L   + D+G  P++  + AVI++  
Sbjct: 403 LFSRMKEQGLFPNVNTYTTLINGHCKAGNFDRAYELMNLMDDEGFRPNIYTYNAVIDSLC 462

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
              +  EA  +  +  + G+  +  TY +LI+     +D     +  A  +   M   G 
Sbjct: 463 KKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQSD-----IKQALAFFCRMNKTGF 517

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
             +      +  AF R +K+ E+  L Q + + G VP
Sbjct: 518 EADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLVP 554



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 72/161 (44%), Gaps = 9/161 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +F +M   G+  ++     M     +DG   EA +  + +  +G +PD    T ++ A
Sbjct: 225 ENVFDEMSVRGVCPDSSSFKLMVIGCFRDGKIQEADRWLSGMIQRGFIPDNATCTLILSA 284

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G    A+  F +M+  G  PN   +  LI GL          +  A + L EMV  
Sbjct: 285 LCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGS-----IKQAFEMLEEMVRN 339

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEA-RGLLQQMKAKGFVPD 231
           G +PN  T+TA+ +   +    ++A R  L+ +++  + P+
Sbjct: 340 GWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDIYKPN 380



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 59/139 (42%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M     K+   + A  LF+++K++G  P+V  +T +I  +  AG    A  +   M   G
Sbjct: 387 MIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGNFDRAYELMNLMDDEG 446

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN YTY  +I  L   +        +A + L +    G+  +  TYT + +   +   
Sbjct: 447 FRPNIYTYNAVIDSLCKKSRA-----PEAYELLNKAFSCGLEADGVTYTILIQEQCKQSD 501

Query: 213 VDEARGLLQQMKAKGFVPD 231
           + +A     +M   GF  D
Sbjct: 502 IKQALAFFCRMNKTGFEAD 520



 Score = 53.9 bits (128), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 70/159 (44%), Gaps = 14/159 (8%)

Query: 73  NLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           NLQ+    MR          M    S+ G  +EA+ +   ++++G  P  +    V+E  
Sbjct: 165 NLQKAHEVMRC---------MLRNFSEIGRLNEAVGMVMDMQNQGLSPSSITMNCVLEIA 215

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             +G    A  VF  M   GV P++ ++ +++ G     DG  +   +A ++L  M+ +G
Sbjct: 216 IESGLIDYAENVFDEMSVRGVCPDSSSFKLMVIG--CFRDGKIQ---EADRWLSGMIQRG 270

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             P+  T T +  A      V+ A    ++M   GF P+
Sbjct: 271 FIPDNATCTLILSALCENGLVNRAIWYFRKMIDLGFKPN 309


>gi|302774715|ref|XP_002970774.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
 gi|300161485|gb|EFJ28100.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
          Length = 497

 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 73/159 (45%), Gaps = 9/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E F KM  +  + N +    + D L K     +A++L   +K +G  PDV+ +T +++  
Sbjct: 100 EFFRKM-DDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGL 158

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               +   A  V   ML +G  PN  TY  L+ GL       A+ + DA   + +M  +G
Sbjct: 159 CKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLC-----RARRVSDALALMRDMTCRG 213

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             PN  TY  + +   +  +V +A  +L  M  KG  PD
Sbjct: 214 CTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPD 252



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +   M   G T N V    + D L K G   +A  + A + DKG  PD++ +  +I    
Sbjct: 205 LMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLC 264

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            A Q  E++ +  R ++ G+ P+  TY+ +I GL       +  L +A + L+ +  +G 
Sbjct: 265 KADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLC-----RSNRLDEACRLLLYVKSRGC 319

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            P+   Y+ + +   +A KVDEA  L + M   G   D
Sbjct: 320 PPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDAD 357



 Score = 74.7 bits (182), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 78/157 (49%), Gaps = 8/157 (5%)

Query: 75  QEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           QE+  +   + ++ N   +   L + G    AL+ F ++ D+   P+V+ ++ +I+    
Sbjct: 69  QEMLDRRSHDVISFNI--LVTGLCRAGKIETALEFFRKMDDRCS-PNVITYSVLIDGLCK 125

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
           A +  +A+ +   M A G +P+  TY +L+ GL   +   A     A + L EM+  G  
Sbjct: 126 ANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAA-----AWEVLREMLDAGCV 180

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           PN  TY ++     RA++V +A  L++ M  +G  P+
Sbjct: 181 PNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPN 217



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 73/159 (45%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+  +M   G   N V    +   L +     +AL L   +  +G  P+VV +  +I+  
Sbjct: 169 EVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGL 228

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+ K+A  +   M+  G  P+   Y +LI GL  A   +  I       L   V  G
Sbjct: 229 CKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESI-----ALLRRAVSGG 283

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           ++P+  TY++V     R+ ++DEA  LL  +K++G  PD
Sbjct: 284 IKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPD 322



 Score = 70.5 bits (171), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 65/140 (46%), Gaps = 6/140 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L K G   EA  L+  +   G   DVV ++ +I+    AG+  EA  +  RM+  G
Sbjct: 329 LIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMG 388

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  TY  LIKGL      +   L +A + + EM      P+A TY  +     R ++
Sbjct: 389 TPPSTMTYNSLIKGLC-----DLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMER 443

Query: 213 VDE-ARGLLQQMKAKGFVPD 231
           VD  A    Q+M   G +PD
Sbjct: 444 VDSAALDYFQEMIDNGVIPD 463



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 5/135 (3%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L +     EA +L   +K +G  PDV+ ++ +I+    AG+  EA  ++  M   G   
Sbjct: 297 GLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDA 356

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           +  TY+ LI GL  A       + +A   L  MV  G  P+  TY ++ +       +DE
Sbjct: 357 DVVTYSTLIDGLCKAGR-----VDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDE 411

Query: 216 ARGLLQQMKAKGFVP 230
           A  L+++M+     P
Sbjct: 412 AIELVEEMERSNCAP 426



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 89/206 (43%), Gaps = 23/206 (11%)

Query: 36  SSSSDQPTKKYVNTKSK-LPPPYDPFKKVVD--------EEPTDPRNLQEIFHKMRTEGL 86
           S+  D+  +  +  KS+  PP    +  ++D        +E  D      ++  M  +G 
Sbjct: 301 SNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFD------LYEVMTGDGC 354

Query: 87  TNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALR 143
             + V    + D L K G   EA  L A++   G  P  + + ++I+         EA+ 
Sbjct: 355 DADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIE 414

Query: 144 VFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAV 203
           +   M  S  AP+A TY +LI G+        ++   A  Y  EM+  G+ P+  TY+ +
Sbjct: 415 LVEEMERSNCAPSAVTYNILIHGMCRME----RVDSAALDYFQEMIDNGVIPDHITYSIL 470

Query: 204 FEAFVRAQKVDEARGL-LQQMKAKGF 228
            E   +++ + E R L L QM   G+
Sbjct: 471 LEGLKKSKDLHELRHLVLDQMVQLGY 496


>gi|356541205|ref|XP_003539071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g01570-like [Glycine max]
          Length = 768

 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 79/155 (50%), Gaps = 5/155 (3%)

Query: 92  KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
            +  A SK     +A+++F Q++  G  PD +A+ ++++ +  A +  EA ++F +M+  
Sbjct: 290 NLIQACSKTYRMEDAIRIFNQMQSNGFRPDTLAYNSLLDGHFKATKVMEACQLFEKMVQE 349

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           GV P+ +TY +LI GL       A     A     ++  KG   +  TY+ V     +  
Sbjct: 350 GVRPSCWTYNILIHGLFRNGRAEA-----AYTMFCDLKKKGQFVDGITYSIVVLQLCKEG 404

Query: 212 KVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
           +++EA  L+++M+++GFV D   +   LI     G
Sbjct: 405 QLEEALQLVEEMESRGFVVDLVTITSLLISIHRHG 439



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 69/135 (51%), Gaps = 5/135 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +  AL + G   +A+ ++ ++    H PD   +T +I+A +   + ++A+R+F +M ++G
Sbjct: 256 LITALCRLGKVDDAITVYEELNGSAHQPDRFTYTNLIQACSKTYRMEDAIRIFNQMQSNG 315

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+   Y  L+ G   A     K++ +A +   +MV +G+RP+  TY  +     R  +
Sbjct: 316 FRPDTLAYNSLLDGHFKA----TKVM-EACQLFEKMVQEGVRPSCWTYNILIHGLFRNGR 370

Query: 213 VDEARGLLQQMKAKG 227
            + A  +   +K KG
Sbjct: 371 AEAAYTMFCDLKKKG 385



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 66/152 (43%), Gaps = 9/152 (5%)

Query: 92  KMFDALSKDGLTHEALQLFAQIKDK-GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           ++  AL K  +  E  Q+F ++++K G   D   +   I A+   G       +F  M  
Sbjct: 181 QLLVALRKADMRVEFEQVFQRLREKRGFSFDTWGYNVCIHAFGCWGDLATCFALFKEMKG 240

Query: 151 SG---VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAF 207
                VAP+  TY  LI  L          + DA     E+ G   +P+  TYT + +A 
Sbjct: 241 GNKGFVAPDLCTYNSLITALCRLGK-----VDDAITVYEELNGSAHQPDRFTYTNLIQAC 295

Query: 208 VRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
            +  ++++A  +  QM++ GF PD  A    L
Sbjct: 296 SKTYRMEDAIRIFNQMQSNGFRPDTLAYNSLL 327



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 39/71 (54%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +AL K     E  +LF Q++  G  PDVV +  +IE ++ AG+ K+A +    ML +G
Sbjct: 673 LINALGKASRIDEVNKLFEQMRSSGINPDVVTYNTLIEVHSKAGRLKDAYKFLKMMLDAG 732

Query: 153 VAPNAYTYAVL 163
            +PN  T   L
Sbjct: 733 CSPNHVTDTTL 743



 Score = 47.4 bits (111), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 63/146 (43%), Gaps = 8/146 (5%)

Query: 86  LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVF 145
           + N  + +F A  K  L   A +LF    D G  P    + +++ ++   G   EA  + 
Sbjct: 564 MVNTFLSIFLAKGKLSL---ACKLFEIFSDAGVDPVSYTYNSIMSSFVKKGYFAEAWAIL 620

Query: 146 MRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFE 205
             M       +  TY ++I+GL     G A +   A   L  ++ +G   +   Y  +  
Sbjct: 621 TEMGEKFCPTDIATYNMIIQGLGKM--GRADL---ASAVLDRLLRQGGYLDIVMYNTLIN 675

Query: 206 AFVRAQKVDEARGLLQQMKAKGFVPD 231
           A  +A ++DE   L +QM++ G  PD
Sbjct: 676 ALGKASRIDEVNKLFEQMRSSGINPD 701



 Score = 45.1 bits (105), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 5/88 (5%)

Query: 116 KGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNA 175
           +G   D+V +  +I A   A +  E  ++F +M +SG+ P+  TY  LI+         A
Sbjct: 661 QGGYLDIVMYNTLINALGKASRIDEVNKLFEQMRSSGINPDVVTYNTLIE-----VHSKA 715

Query: 176 KILGDAQKYLMEMVGKGMRPNAGTYTAV 203
             L DA K+L  M+  G  PN  T T +
Sbjct: 716 GRLKDAYKFLKMMLDAGCSPNHVTDTTL 743


>gi|297838419|ref|XP_002887091.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297332932|gb|EFH63350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 568

 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 78/159 (49%), Gaps = 8/159 (5%)

Query: 75  QEIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +++F +M   GL  N      +   L K+G+  +  +++ ++++ G  P++  +  V+  
Sbjct: 218 KDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEDGVFPNLYTYNCVMNQ 277

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +   G+ K+A ++F  M   GV+ N  TY  LI GL      N     +A K + +M   
Sbjct: 278 HCKDGRTKDAFKLFDEMRERGVSCNIVTYNTLIGGLCREMKAN-----EANKVMDQMKSD 332

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           G+ PN  TY  + + F    K+ +A  L + +K++G  P
Sbjct: 333 GINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSP 371



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 78/178 (43%), Gaps = 13/178 (7%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++  ++R  G + N V    + D   K G   +A  LF ++   G + +   +T +I   
Sbjct: 184 DLLVELREFGFSPNVVIYTTLIDGCCKRGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGL 243

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G  K+   ++ +M   GV PN YTY  ++       DG  K   DA K   EM  +G
Sbjct: 244 FKNGIKKQGFEMYEKMQEDGVFPNLYTYNCVMN--QHCKDGRTK---DAFKLFDEMRERG 298

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGV 250
           +  N  TY  +     R  K +EA  ++ QMK+ G  P+       LID    GF GV
Sbjct: 299 VSCNIVTYNTLIGGLCREMKANEANKVMDQMKSDGINPN-LITYNTLID----GFCGV 351



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 69/140 (49%), Gaps = 5/140 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D  ++     +A+QL + +++ G  PDV  ++ +I  +   GQ  EA R+F  M+A  
Sbjct: 414 LIDTFARMDNMEKAIQLRSPMEELGLTPDVHTYSVLIHGFCIKGQMNEASRLFKLMVAKK 473

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN   Y  ++  L    +G++     A +   EM  K + PN  +Y  + E   + +K
Sbjct: 474 LEPNKVIYNTMV--LGYCKEGSSY---RALRLFREMEEKELPPNVASYRYMIEVLCKERK 528

Query: 213 VDEARGLLQQMKAKGFVPDE 232
             EA GL+++M   G  P +
Sbjct: 529 SKEAEGLVEKMIDTGIDPSD 548



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 79/182 (43%), Gaps = 12/182 (6%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            ++  +M+++G+  N +    + D     G   +AL L   +K +G  P +V +  ++  
Sbjct: 323 NKVMDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSG 382

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +   G    A +V   M   G+ P+  TY +LI   A   +     +  A +    M   
Sbjct: 383 FCKKGDTSGAGKVVKEMEERGIKPSKITYTILIDTFARMDN-----MEKAIQLRSPMEEL 437

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI---DKRGQGFR 248
           G+ P+  TY+ +   F    +++EA  L + M AK   P+ K +   ++    K G  +R
Sbjct: 438 GLTPDVHTYSVLIHGFCIKGQMNEASRLFKLMVAKKLEPN-KVIYNTMVLGYCKEGSSYR 496

Query: 249 GV 250
            +
Sbjct: 497 AL 498



 Score = 52.8 bits (125), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 72/154 (46%), Gaps = 8/154 (5%)

Query: 81  MRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ 137
           +++ GL+ + V    +     K G T  A ++  +++++G  P  + +T +I+ +A    
Sbjct: 364 LKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKITYTILIDTFARMDN 423

Query: 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA 197
            ++A+++   M   G+ P+ +TY+VLI G       N     +A +    MV K + PN 
Sbjct: 424 MEKAIQLRSPMEELGLTPDVHTYSVLIHGFCIKGQMN-----EASRLFKLMVAKKLEPNK 478

Query: 198 GTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             Y  +   + +      A  L ++M+ K   P+
Sbjct: 479 VIYNTMVLGYCKEGSSYRALRLFREMEEKELPPN 512


>gi|222637127|gb|EEE67259.1| hypothetical protein OsJ_24425 [Oryza sativa Japonica Group]
          Length = 799

 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 73/157 (46%), Gaps = 8/157 (5%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F +M+  GL  + V    + + L + G   EA ++  +++DKG   D V +T +I+ Y  
Sbjct: 378 FDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCK 437

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            G+  EA  V  +M+   V PN  TY  L  GL    D  A     A + L EM  KG+ 
Sbjct: 438 VGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCA-----ANELLHEMCSKGLE 492

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            N  TY ++     +A  +++A   +  M   G  PD
Sbjct: 493 LNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPD 529



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 76/158 (48%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           + +KM  + +T N V    + D L K G    A +L  ++  KG   ++  + ++I    
Sbjct: 447 VHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLC 506

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG  ++A+R  + M  +G+ P+ YTY  +I  L       +K L  A   L EM+ KG+
Sbjct: 507 KAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALC-----QSKELDRAHSLLQEMLDKGI 561

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +P   TY  +   F  + +V+  + LL+ M  K   P+
Sbjct: 562 KPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPN 599



 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 75/161 (46%), Gaps = 8/161 (4%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            E+ H+M ++GL  N      + + L K G   +A++    + + G  PDV  +T +I A
Sbjct: 480 NELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGA 539

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              + +   A  +   ML  G+ P   TY VL+ G   +     ++ G  ++ L  M+ K
Sbjct: 540 LCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMS----GRVEG-GKRLLEWMLEK 594

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
            + PN  TY ++ + +   + +     + + M ++  VP+E
Sbjct: 595 NIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNE 635



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 65/126 (51%), Gaps = 5/126 (3%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A++L +++  +G   + VA+T+VI      GQ  +A+RV   M+  GV  +A  +  ++ 
Sbjct: 304 AIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMS 363

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G     D     L  A+ +  EM  +G+  +  TYTA+     RA ++ EA  +LQ+M+ 
Sbjct: 364 GFCRKGD-----LAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMED 418

Query: 226 KGFVPD 231
           KG   D
Sbjct: 419 KGLDVD 424



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 70/152 (46%), Gaps = 8/152 (5%)

Query: 74  LQEIFHK-MRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           LQE+  K ++   +T N   + +     G      +L   + +K   P+   + ++++ Y
Sbjct: 553 LQEMLDKGIKPTIVTYNV--LMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQY 610

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
                 K    ++  ML+  V PN  TY +LIKG        A+ + +A  +  EM+ KG
Sbjct: 611 CIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKG-----HCKARNMKEALYFHSEMIEKG 665

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            R  A +Y A+     + +K  EAR L ++M+
Sbjct: 666 FRLTASSYNALIRLLNKKKKFTEARRLFEKMR 697



 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 71/159 (44%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++  +M   GL  N V    +   L  +G   +A+++   +   G + D    T V+  +
Sbjct: 306 KLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGF 365

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G    A   F  M   G+A +  TY  LI GL  A +     L +A++ L EM  KG
Sbjct: 366 CRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGE-----LKEAERVLQEMEDKG 420

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +  +A TYT + + + +  K+ EA  +  +M  K   P+
Sbjct: 421 LDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPN 459


>gi|168054024|ref|XP_001779433.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162669118|gb|EDQ55711.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 570

 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 76/157 (48%), Gaps = 9/157 (5%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F +M   G   + V    M D   K G   EA+ L+ ++K  G  PD V +  ++  +  
Sbjct: 101 FDRMHEAGCVPDVVTYSTMIDVYGKMGKYDEAIALYERVKQAGWKPDKVTYGTMVRLFGR 160

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
           AG  + A+ +F  M  SGV P+A  Y ++I  L     G A  +G A K   EM  +G++
Sbjct: 161 AGYIRAAVSIFEEMKGSGVQPDAIVYNIMIACL-----GRAGRMGHALKVFEEMEREGVK 215

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           PNA T + V E + R   V E   + Q+++ +G   D
Sbjct: 216 PNAVTLSTVMETYSRCGNVMEGLEVFQRLR-QGVACD 251



 Score = 69.3 bits (168), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 9/166 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           IF +M+  G+  +A+    M   L + G    AL++F +++ +G  P+ V  + V+E Y+
Sbjct: 170 IFEEMKGSGVQPDAIVYNIMIACLGRAGRMGHALKVFEEMEREGVKPNAVTLSTVMETYS 229

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G   E L VF R L  GVA +   Y  ++K    A      +  +A++YL EM   G 
Sbjct: 230 RCGNVMEGLEVFQR-LRQGVACDVIVYNAVLKMCREAG-----LASEAEQYLREMTESGH 283

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
           +PN  TY  +   + +     EA     QM   G+  D  A    L
Sbjct: 284 QPNDWTYRNMISVYAKKGMAVEAHRTFSQMVEAGYQIDVMAYTSLL 329



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 83/165 (50%), Gaps = 19/165 (11%)

Query: 77  IFHKMRTEGLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M  EG+  NAV +    +  S+ G   E L++F +++ +G   DV+ + AV++   
Sbjct: 205 VFEEMEREGVKPNAVTLSTVMETYSRCGNVMEGLEVFQRLR-QGVACDVIVYNAVLKMCR 263

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLI-----KGLAAAADGNAKILGDAQKYLMEM 188
            AG   EA +    M  SG  PN +TY  +I     KG+A           +A +   +M
Sbjct: 264 EAGLASEAEQYLREMTESGHQPNDWTYRNMISVYAKKGMAV----------EAHRTFSQM 313

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK 233
           V  G + +   YT++ +A+  A++ ++ + +L +M +    PDE+
Sbjct: 314 VEAGYQIDVMAYTSLLQAYGNAKEYNKVQEILDEMTSVNCAPDER 358



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 65/126 (51%), Gaps = 5/126 (3%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A+  F ++ + G +PDVV ++ +I+ Y   G+  EA+ ++ R+  +G  P+  TY  +++
Sbjct: 97  AMAWFDRMHEAGCVPDVVTYSTMIDVYGKMGKYDEAIALYERVKQAGWKPDKVTYGTMVR 156

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
                  G A  +  A     EM G G++P+A  Y  +     RA ++  A  + ++M+ 
Sbjct: 157 LF-----GRAGYIRAAVSIFEEMKGSGVQPDAIVYNIMIACLGRAGRMGHALKVFEEMER 211

Query: 226 KGFVPD 231
           +G  P+
Sbjct: 212 EGVKPN 217



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/150 (26%), Positives = 70/150 (46%), Gaps = 12/150 (8%)

Query: 76  EIFHKMRTEGLTNNAVKMFDALSK----DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           E+F ++R +G+  + + +++A+ K     GL  EA Q   ++ + GH P+   +  +I  
Sbjct: 239 EVFQRLR-QGVACDVI-VYNAVLKMCREAGLASEAEQYLREMTESGHQPNDWTYRNMISV 296

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           YA  G   EA R F +M+ +G   +   Y  L++     A GNAK     Q+ L EM   
Sbjct: 297 YAKKGMAVEAHRTFSQMVEAGYQIDVMAYTSLLQ-----AYGNAKEYNKVQEILDEMTSV 351

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221
              P+      +    + +   DE  G+L+
Sbjct: 352 NCAPDERLCCVILN-LLDSCDTDEELGILR 380



 Score = 43.1 bits (100), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 17/118 (14%)

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
           PD + ++ +I           A+  F RM  +G  P+  TY+ +I            + G
Sbjct: 76  PDNITYSTLISCANRCNYQDAAMAWFDRMHEAGCVPDVVTYSTMI-----------DVYG 124

Query: 180 DAQKY-----LMEMVGK-GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              KY     L E V + G +P+  TY  +   F RA  +  A  + ++MK  G  PD
Sbjct: 125 KMGKYDEAIALYERVKQAGWKPDKVTYGTMVRLFGRAGYIRAAVSIFEEMKGSGVQPD 182


>gi|186510147|ref|NP_188293.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274280|sp|Q9LUR2.1|PP238_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g16710, mitochondrial; Flags: Precursor
 gi|11994626|dbj|BAB02763.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642334|gb|AEE75855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 507

 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 8/164 (4%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +IF++M  +G+  N +    +       G    A ++F Q+  +   PD+  +  +++  
Sbjct: 349 KIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGL 408

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+ ++AL +F  M    +  N  TY ++I+G+          + DA      +  KG
Sbjct: 409 CCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGK-----VEDAFDLFCSLFSKG 463

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK 236
           M+PN  TYT +   F R   + EA  L ++MK  GF+P+E   K
Sbjct: 464 MKPNVITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPNESVYK 507



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 65/137 (47%), Gaps = 10/137 (7%)

Query: 100 DGLTH-----EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           +G  H     +A+ LF QI   G  P+VV +T +I           A+ +F +M  +G  
Sbjct: 161 NGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSR 220

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
           PN  TY  L+ GL           GDA   L +M+ + + PN  T+TA+ +AFV+  K+ 
Sbjct: 221 PNVVTYNALVTGLCEIGR-----WGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLM 275

Query: 215 EARGLLQQMKAKGFVPD 231
           EA+ L   M      PD
Sbjct: 276 EAKELYNVMIQMSVYPD 292



 Score = 70.5 bits (171), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 76/159 (47%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F++M T G   N V    +   L + G   +A  L   +  +   P+V+  TA+I+A+
Sbjct: 209 ELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAF 268

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+  EA  ++  M+   V P+ +TY  LI GL         +L +A++    M   G
Sbjct: 269 VKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYG-----LLDEARQMFYLMERNG 323

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             PN   YT +   F ++++V++   +  +M  KG V +
Sbjct: 324 CYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVAN 362



 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 61/139 (43%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + DA  K G   EA +L+  +      PDV  + ++I      G   EA ++F  M  +G
Sbjct: 264 LIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNG 323

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN   Y  LI G        +K + D  K   EM  KG+  N  TYT + + +    +
Sbjct: 324 CYPNEVIYTTLIHGFC-----KSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGR 378

Query: 213 VDEARGLLQQMKAKGFVPD 231
            D A+ +  QM ++   PD
Sbjct: 379 PDVAQEVFNQMSSRRAPPD 397



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 63/134 (47%), Gaps = 5/134 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L   GL  EA Q+F  ++  G  P+ V +T +I  +  + + ++ +++F  M   G
Sbjct: 299 LINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKG 358

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V  N  TY VLI+G       +      AQ+   +M  +   P+  TY  + +      K
Sbjct: 359 VVANTITYTVLIQGYCLVGRPDV-----AQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGK 413

Query: 213 VDEARGLLQQMKAK 226
           V++A  + + M+ +
Sbjct: 414 VEKALMIFEYMRKR 427



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/159 (23%), Positives = 68/159 (42%), Gaps = 8/159 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F ++   G   N V    +   L K+   + A++LF Q+   G  P+VV + A++    
Sbjct: 175 LFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLC 234

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G+  +A  +   M+   + PN  T+  LI             L +A++    M+   +
Sbjct: 235 EIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGK-----LMEAKELYNVMIQMSV 289

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
            P+  TY ++         +DEAR +   M+  G  P+E
Sbjct: 290 YPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNE 328



 Score = 46.6 bits (109), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 25/128 (19%), Positives = 59/128 (46%), Gaps = 5/128 (3%)

Query: 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
           ++AL LF ++     +P ++  T ++   A   +    + +F +M   G+ P   T  ++
Sbjct: 65  NDALDLFTRMVHSRPLPSIIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCNIV 124

Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
           +  +  ++         A  +L +M+  G  P+  T+T++   +    ++++A  L  Q+
Sbjct: 125 MHCVCLSSQP-----CRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQI 179

Query: 224 KAKGFVPD 231
              GF P+
Sbjct: 180 LGMGFKPN 187


>gi|255660934|gb|ACU25636.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
          Length = 484

 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 79/168 (47%), Gaps = 12/168 (7%)

Query: 78  FHKMRTEGL-----TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           F+KM +EG+     T N   M       G    A + F  +K +   PDV+ +  +I  Y
Sbjct: 138 FNKMLSEGIEPTRHTFNV--MIWGFFLCGKVETANRFFEDMKXREISPDVITYNTMINGY 195

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               + +EA + F+ M    + P   TY  LIKG  +        + DA   L EM G G
Sbjct: 196 YRVKKIEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDR-----VDDALTLLEEMKGFG 250

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
           ++PNA TY+ +      A+K+ EA G+L++M  K   P + ++   LI
Sbjct: 251 IKPNAITYSTLLPGLCNAEKMSEASGILKEMVDKYIAPKDNSIFLRLI 298



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 81/171 (47%), Gaps = 30/171 (17%)

Query: 91  VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           V M D+  K G+  E+++LF ++++ G    + ++ A+ +     G+   A R F +ML+
Sbjct: 84  VLMIDSYGKAGIVQESVKLFQKMEELGVERTIKSYDALFKVILRRGRYMMAKRYFNKMLS 143

Query: 151 SGVAPNAYTYAVLIKGLAAAA----------------------------DGNAKI--LGD 180
            G+ P  +T+ V+I G                                 +G  ++  + +
Sbjct: 144 EGIEPTRHTFNVMIWGFFLCGKVETANRFFEDMKXREISPDVITYNTMINGYYRVKKIEE 203

Query: 181 AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           A+KY +EM G+ + P   TYT + + +V   +VD+A  LL++MK  G  P+
Sbjct: 204 AEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDRVDDALTLLEEMKGFGIKPN 254



 Score = 58.2 bits (139), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 61/120 (50%), Gaps = 6/120 (5%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA + F ++K +   P VV +T +I+ Y S  +  +AL +   M   G+ PNA TY+ L+
Sbjct: 203 EAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDRVDDALTLLEEMKGFGIKPNAITYSTLL 262

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQKVDEARGLLQQM 223
            GL      NA+ + +A   L EMV K + P +   +  +     +A  +D A  +L+ M
Sbjct: 263 PGLC-----NAEKMSEASGILKEMVDKYIAPKDNSIFLRLISGQCKAGNLDAAADVLKAM 317


>gi|357463605|ref|XP_003602084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491132|gb|AES72335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 579

 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 76/154 (49%), Gaps = 8/154 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           ++ +M  +G+  N      + DAL KD    +A+ L A +  KG  P+VV + A+++ Y 
Sbjct: 169 LYSEMIAKGIFPNVYTFSILVDALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYC 228

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
              Q  +AL +F  M+  GV PN + Y ++I GL        K + +A     EM  K +
Sbjct: 229 LVNQVNKALNIFNVMVQEGVEPNVWCYNIIINGLC-----KKKRVDEAMNLFKEMHWKKI 283

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
            P+  TY  + +   +  K+  +  L+ +M++ G
Sbjct: 284 NPDVVTYNILIDGLCKLGKISTSLELVDEMRSIG 317



 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 66/139 (47%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D+L K     +A +L++++  KG  P+V   + +++A     +GK+A+ +   M+  G
Sbjct: 153 IIDSLCKGKFVTDAYRLYSEMIAKGIFPNVYTFSILVDALCKDRKGKQAMNLLAMMMKKG 212

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V PN  TY  ++ G       N      A      MV +G+ PN   Y  +     + ++
Sbjct: 213 VKPNVVTYGAIMDGYCLVNQVNK-----ALNIFNVMVQEGVEPNVWCYNIIINGLCKKKR 267

Query: 213 VDEARGLLQQMKAKGFVPD 231
           VDEA  L ++M  K   PD
Sbjct: 268 VDEAMNLFKEMHWKKINPD 286



 Score = 68.2 bits (165), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 68/139 (48%), Gaps = 8/139 (5%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K G T  A+Q+  +        DVV ++ +I++        +A R++  M+A G
Sbjct: 121 LMNGLCKMGETRAAMQMLRKTWVNA---DVVMYSTIIDSLCKGKFVTDAYRLYSEMIAKG 177

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN YT+++L+  L     G       A   L  M+ KG++PN  TY A+ + +    +
Sbjct: 178 IFPNVYTFSILVDALCKDRKGK-----QAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQ 232

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V++A  +   M  +G  P+
Sbjct: 233 VNKALNIFNVMVQEGVEPN 251



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 76/173 (43%), Gaps = 13/173 (7%)

Query: 61  KKVVDEEPTDPRNLQEIFH--KMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGH 118
           KK VDE      NL +  H  K+  + +T N   + D L K G    +L+L  +++  G 
Sbjct: 265 KKRVDE----AMNLFKEMHWKKINPDVVTYNI--LIDGLCKLGKISTSLELVDEMRSIGK 318

Query: 119 MPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKIL 178
             D++ + +++ A        +A+ +   +   G+ PN  TY  LI GL    DG    L
Sbjct: 319 TVDIITYNSLLHALCKNHHLDQAITLVKEIKDQGIQPNVCTYTTLIDGL--CKDGR---L 373

Query: 179 GDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            DA     E++ +G      TY  +     +    DEA  LL +M+    +PD
Sbjct: 374 EDAYVIFQEILTEGYHITVWTYNVMINGLCKKGLFDEALALLSRMEDNACIPD 426



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 70/156 (44%), Gaps = 8/156 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+  +MR+ G T + +    +  AL K+    +A+ L  +IKD+G  P+V  +T +I+  
Sbjct: 308 ELVDEMRSIGKTVDIITYNSLLHALCKNHHLDQAITLVKEIKDQGIQPNVCTYTTLIDGL 367

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+ ++A  +F  +L  G     +TY V+I GL         +  +A   L  M    
Sbjct: 368 CKDGRLEDAYVIFQEILTEGYHITVWTYNVMINGLCKKG-----LFDEALALLSRMEDNA 422

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
             P+A +Y  +  A     +  +   LL  M  +G 
Sbjct: 423 CIPDAVSYETIIYALSEKGETVKTNKLLCAMIVRGL 458



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 71/155 (45%), Gaps = 8/155 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           IF+ M  EG+  N      + + L K     EA+ LF ++  K   PDVV +  +I+   
Sbjct: 239 IFNVMVQEGVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNILIDGLC 298

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G+   +L +   M + G   +  TY  L+  L          L  A   + E+  +G+
Sbjct: 299 KLGKISTSLELVDEMRSIGKTVDIITYNSLLHALCKNHH-----LDQAITLVKEIKDQGI 353

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
           +PN  TYT + +   +  ++++A  + Q++  +G+
Sbjct: 354 QPNVCTYTTLIDGLCKDGRLEDAYVIFQEILTEGY 388



 Score = 48.9 bits (115), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 63/141 (44%), Gaps = 9/141 (6%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A+ LF Q++  G  P +V  T ++  Y   G       +  ++L  G  PN+ T+  LIK
Sbjct: 29  AISLFRQLEFNGIKPSIVTLTILMNCYCHTGGITFLFSILTKILKMGYEPNSITFTTLIK 88

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G+    +G A    +A  +   +V  G + +  +Y  +        K+ E R  +Q ++ 
Sbjct: 89  GM--CLNGQAY---EALLFHDHVVAHGFKLDQVSYAILMNGLC---KMGETRAAMQMLR- 139

Query: 226 KGFVPDEKAVKEALIDKRGQG 246
           K +V  +  +   +ID   +G
Sbjct: 140 KTWVNADVVMYSTIIDSLCKG 160



 Score = 44.7 bits (104), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 11/110 (10%)

Query: 53  LPPPYDPFKKVVDEEPTDPRNLQE---IFHKMRTEG-----LTNNAVKMFDALSKDGLTH 104
           + P    +  ++D    D R L++   IF ++ TEG      T N   M + L K GL  
Sbjct: 353 IQPNVCTYTTLIDGLCKDGR-LEDAYVIFQEILTEGYHITVWTYNV--MINGLCKKGLFD 409

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           EAL L ++++D   +PD V++  +I A +  G+  +  ++   M+  G++
Sbjct: 410 EALALLSRMEDNACIPDAVSYETIIYALSEKGETVKTNKLLCAMIVRGLS 459


>gi|242067341|ref|XP_002448947.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
 gi|241934790|gb|EES07935.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
          Length = 797

 Score = 76.6 bits (187), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 46/172 (26%), Positives = 82/172 (47%), Gaps = 15/172 (8%)

Query: 70  DPRNLQE----IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKD---KGHM 119
           D + L+E    +  +M   G T + V    +      +    EAL+L   + D   +   
Sbjct: 141 DAKRLREAMDILIKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCP 200

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
           P+VV++  VI  + + GQ  +A  +F+ M+  G+ PN  TY  +I GL       A+++ 
Sbjct: 201 PNVVSYATVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLC-----KAQVVD 255

Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            A+    +M+ KG++P+  TY  +   ++   K  E   +L++M A G  PD
Sbjct: 256 RAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPD 307



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 51/177 (28%), Positives = 80/177 (45%), Gaps = 16/177 (9%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F +M   G+  N V    + D L K  +   A  +F Q+ DKG  PD   +  +I  Y 
Sbjct: 225 LFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYL 284

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
           S G+ KE +R+   M A G+ P+ YTY  L+  L    +G  +   +A+ +   M+ KG+
Sbjct: 285 SIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYL--CNNGRCR---EARFFFDSMIRKGI 339

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA--------VKEALIDK 242
           +PN   Y  +   +     + E   LL  M   G  PD            K+A+ID+
Sbjct: 340 KPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDE 396



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/139 (30%), Positives = 74/139 (53%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +F A +K  +  EA+ +F ++K +G  PDVV   A+I+A    G+  +A+  F +M+  G
Sbjct: 384 IFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALCKLGRVDDAVLKFNQMMNEG 443

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           VAPN + +  L+ GL    D   K    A+++  EM+ +G+RP+   +  +        +
Sbjct: 444 VAPNIFVFNSLVYGL-CTVDKWEK----AKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQ 498

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V +A+ L+  M+  G  PD
Sbjct: 499 VMKAQRLIDLMERVGTRPD 517



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 41/132 (31%), Positives = 62/132 (46%), Gaps = 5/132 (3%)

Query: 100 DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYT 159
           +G   +A  LF ++ D+G  P+VV +T VI+    A     A  VF +M+  GV P+  T
Sbjct: 216 EGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDT 275

Query: 160 YAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGL 219
           Y  LI G  +   G  K   +  + L EM   G++P+  TY ++        +  EAR  
Sbjct: 276 YNCLIHGYLSI--GKWK---EVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFF 330

Query: 220 LQQMKAKGFVPD 231
              M  KG  P+
Sbjct: 331 FDSMIRKGIKPN 342



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 84/187 (44%), Gaps = 33/187 (17%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           IF+KM+ +GL+ + V    + DAL K G   +A+  F Q+ ++G  P++    +++    
Sbjct: 400 IFNKMKQQGLSPDVVNFGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLC 459

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLI-----KGLAAAAD---------------- 172
           +  + ++A   +  ML  G+ P+   +  ++     KG    A                 
Sbjct: 460 TVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPDVI 519

Query: 173 ------GNAKILG---DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
                 G   ++G   +A K L  M+  G++P+  TY  +   + RA ++D+A G+ ++M
Sbjct: 520 SYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREM 579

Query: 224 KAKGFVP 230
              G  P
Sbjct: 580 LRNGITP 586



 Score = 59.3 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/156 (25%), Positives = 70/156 (44%), Gaps = 8/156 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E + +M  +G+  + V    +   L   G   +A +L   ++  G  PDV+++T +I  
Sbjct: 468 KEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPDVISYTTLIGG 527

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +   G+  EA +    ML+ G+ P+ +TY  L+ G   A       + DA     EM+  
Sbjct: 528 HCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGR-----IDDAYGVFREMLRN 582

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
           G+ P   TY+ +       ++  EA+ L   M   G
Sbjct: 583 GITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSG 618



 Score = 53.5 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 5/128 (3%)

Query: 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
           G   EA +    +   G  PD   +  ++  Y  AG+  +A  VF  ML +G+ P   TY
Sbjct: 532 GRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTY 591

Query: 161 AVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
           + ++ GL        +   +A++  + M+  G + N   Y  +     +   VDEA  L 
Sbjct: 592 STILHGLF-----TTRRFSEAKELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLF 646

Query: 221 QQMKAKGF 228
           Q + +K F
Sbjct: 647 QSLCSKDF 654



 Score = 46.2 bits (108), Expect = 0.015,   Method: Composition-based stats.
 Identities = 35/163 (21%), Positives = 63/163 (38%), Gaps = 8/163 (4%)

Query: 72  RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R  +  F  M  +G+  N      +    +  G   E   L   + + G  PD      +
Sbjct: 325 REARFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNII 384

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
             AYA      EA+ +F +M   G++P+   +  LI  L          + DA     +M
Sbjct: 385 FTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALCKLGR-----VDDAVLKFNQM 439

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + +G+ PN   + ++        K ++A+    +M  +G  PD
Sbjct: 440 MNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPD 482



 Score = 45.1 bits (105), Expect = 0.030,   Method: Composition-based stats.
 Identities = 35/132 (26%), Positives = 53/132 (40%), Gaps = 5/132 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M  AL K G   +A+ LFA I   G +PDV  +  + E     G  +E   +F  M  SG
Sbjct: 664 MIGALFKSGRNEDAMHLFATISSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSG 723

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN+     L++ L    D     +  A  YL ++  K     A T   +     R + 
Sbjct: 724 TTPNSRMLNALVRRLLHRGD-----ITRAGAYLSKLDEKNFSLEASTTAMLISLLSRDEY 778

Query: 213 VDEARGLLQQMK 224
              A  L ++ +
Sbjct: 779 HHHATSLPEKYR 790



 Score = 45.1 bits (105), Expect = 0.031,   Method: Composition-based stats.
 Identities = 28/136 (20%), Positives = 57/136 (41%), Gaps = 5/136 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + LSK+    EA +LF  +  K    ++     +I A   +G+ ++A+ +F  + + G
Sbjct: 629 ILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNEDAMHLFATISSYG 688

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+ +TY ++ + L          L +       M   G  PN+    A+    +    
Sbjct: 689 LVPDVFTYCLIAENLIEEG-----YLEEFDDLFSAMEKSGTTPNSRMLNALVRRLLHRGD 743

Query: 213 VDEARGLLQQMKAKGF 228
           +  A   L ++  K F
Sbjct: 744 ITRAGAYLSKLDEKNF 759


>gi|115472343|ref|NP_001059770.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|27818007|dbj|BAC55770.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|50509504|dbj|BAD31185.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|113611306|dbj|BAF21684.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|215715304|dbj|BAG95055.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 754

 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 73/157 (46%), Gaps = 8/157 (5%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F +M+  GL  + V    + + L + G   EA ++  +++DKG   D V +T +I+ Y  
Sbjct: 378 FDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCK 437

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            G+  EA  V  +M+   V PN  TY  L  GL    D  A     A + L EM  KG+ 
Sbjct: 438 VGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCA-----ANELLHEMCSKGLE 492

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            N  TY ++     +A  +++A   +  M   G  PD
Sbjct: 493 LNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPD 529



 Score = 72.0 bits (175), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 76/158 (48%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           + +KM  + +T N V    + D L K G    A +L  ++  KG   ++  + ++I    
Sbjct: 447 VHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLC 506

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG  ++A+R  + M  +G+ P+ YTY  +I  L       +K L  A   L EM+ KG+
Sbjct: 507 KAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALC-----QSKELDRAHSLLQEMLDKGI 561

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +P   TY  +   F  + +V+  + LL+ M  K   P+
Sbjct: 562 KPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPN 599



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 65/126 (51%), Gaps = 5/126 (3%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A++L +++  +G   + VA+T+VI      GQ  +A+RV   M+  GV  +A  +  ++ 
Sbjct: 304 AIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMS 363

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G     D     L  A+ +  EM  +G+  +  TYTA+     RA ++ EA  +LQ+M+ 
Sbjct: 364 GFCRKGD-----LAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMED 418

Query: 226 KGFVPD 231
           KG   D
Sbjct: 419 KGLDVD 424



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 75/161 (46%), Gaps = 8/161 (4%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            E+ H+M ++GL  N      + + L K G   +A++    + + G  PDV  +T +I A
Sbjct: 480 NELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGA 539

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              + +   A  +   ML  G+ P   TY VL+ G   +     ++ G  ++ L  M+ K
Sbjct: 540 LCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMS----GRVEG-GKRLLEWMLEK 594

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
            + PN  TY ++ + +   + +     + + M ++  VP+E
Sbjct: 595 NIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNE 635



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 70/152 (46%), Gaps = 8/152 (5%)

Query: 74  LQEIFHK-MRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           LQE+  K ++   +T N   + +     G      +L   + +K   P+   + ++++ Y
Sbjct: 553 LQEMLDKGIKPTIVTYNV--LMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQY 610

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
                 K    ++  ML+  V PN  TY +LIKG        A+ + +A  +  EM+ KG
Sbjct: 611 CIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKG-----HCKARNMKEALYFHSEMIEKG 665

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            R  A +Y A+     + +K  EAR L ++M+
Sbjct: 666 FRLTASSYNALIRLLNKKKKFTEARRLFEKMR 697



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 71/159 (44%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++  +M   GL  N V    +   L  +G   +A+++   +   G + D    T V+  +
Sbjct: 306 KLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGF 365

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G    A   F  M   G+A +  TY  LI GL  A +     L +A++ L EM  KG
Sbjct: 366 CRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGE-----LKEAERVLQEMEDKG 420

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +  +A TYT + + + +  K+ EA  +  +M  K   P+
Sbjct: 421 LDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPN 459


>gi|218199706|gb|EEC82133.1| hypothetical protein OsI_26175 [Oryza sativa Indica Group]
          Length = 799

 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 73/157 (46%), Gaps = 8/157 (5%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F +M+  GL  + V    + + L + G   EA ++  +++DKG   D V +T +I+ Y  
Sbjct: 378 FDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCK 437

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            G+  EA  V  +M+   V PN  TY  L  GL    D  A     A + L EM  KG+ 
Sbjct: 438 VGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCA-----ANELLHEMCSKGLE 492

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            N  TY ++     +A  +++A   +  M   G  PD
Sbjct: 493 LNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPD 529



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 76/158 (48%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           + +KM  + +T N V    + D L K G    A +L  ++  KG   ++  + ++I    
Sbjct: 447 VHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLC 506

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG  ++A+R  + M  +G+ P+ YTY  +I  L       +K L  A   L EM+ KG+
Sbjct: 507 KAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALC-----QSKELDRAHSLLQEMLDKGI 561

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +P   TY  +   F  + +V+  + LL+ M  K   P+
Sbjct: 562 KPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPN 599



 Score = 63.9 bits (154), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 75/161 (46%), Gaps = 8/161 (4%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            E+ H+M ++GL  N      + + L K G   +A++    + + G  PDV  +T +I A
Sbjct: 480 NELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGA 539

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              + +   A  +   ML  G+ P   TY VL+ G   +     ++ G  ++ L  M+ K
Sbjct: 540 LCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMS----GRVEG-GKRLLEWMLEK 594

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
            + PN  TY ++ + +   + +     + + M ++  VP+E
Sbjct: 595 NIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNE 635



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 65/126 (51%), Gaps = 5/126 (3%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A++L +++  +G   + VA+T+VI      GQ  +A+RV   M+  GV  +A  +  ++ 
Sbjct: 304 AIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMS 363

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G     D     L  A+ +  EM  +G+  +  TYTA+     RA ++ EA  +LQ+M+ 
Sbjct: 364 GFCRKGD-----LAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMED 418

Query: 226 KGFVPD 231
           KG   D
Sbjct: 419 KGLDVD 424



 Score = 57.4 bits (137), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/152 (25%), Positives = 70/152 (46%), Gaps = 8/152 (5%)

Query: 74  LQEIFHK-MRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           LQE+  K ++   +T N   + +     G      +L   + +K   P+   + ++++ Y
Sbjct: 553 LQEMLDKGIKPTIVTYNV--LMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQY 610

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
                 K    ++  ML+  V PN  TY +LIKG        A+ + +A  +  EM+ KG
Sbjct: 611 CIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKG-----HCKARNMKEALYFHSEMIEKG 665

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
            R  A +Y A+     + +K  EAR L ++M+
Sbjct: 666 FRLTASSYNALIRLLNKKKKFTEARRLFEKMR 697



 Score = 56.6 bits (135), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 71/159 (44%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++  +M   GL  N V    +   L  +G   +A+++   +   G + D    T V+  +
Sbjct: 306 KLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGF 365

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G    A   F  M   G+A +  TY  LI GL  A +     L +A++ L EM  KG
Sbjct: 366 CRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGE-----LKEAERVLQEMEDKG 420

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +  +A TYT + + + +  K+ EA  +  +M  K   P+
Sbjct: 421 LDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPN 459


>gi|147789724|emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera]
          Length = 592

 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 5/138 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +  AL K+G    A+ +   +   G +PD+V +  ++ A    G   +AL +F ++   G
Sbjct: 363 LISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMG 422

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN  +Y  +I  L +  D  ++ LG     +  M+ KG+ P+  TY ++     R   
Sbjct: 423 CPPNVSSYNTMISALWSCGD-RSRALG----MVPAMISKGIDPDEITYNSLISCLCRDGL 477

Query: 213 VDEARGLLQQMKAKGFVP 230
           V+EA GLL  M+  GF P
Sbjct: 478 VEEAIGLLDDMEQSGFRP 495



 Score = 75.9 bits (185), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 80/161 (49%), Gaps = 8/161 (4%)

Query: 89  NAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRM 148
           N   +  AL K+G  ++AL++F +++  G  P+V ++  +I A  S G    AL +   M
Sbjct: 394 NYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAM 453

Query: 149 LASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFV 208
           ++ G+ P+  TY  LI  L    DG   ++ +A   L +M   G RP   +Y  V     
Sbjct: 454 ISKGIDPDEITYNSLISCL--CRDG---LVEEAIGLLDDMEQSGFRPTVISYNIVLLGLC 508

Query: 209 RAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRG 249
           + +++D+A G+  +M  KG  P+E      ++   G GF G
Sbjct: 509 KVRRIDDAIGMFAEMIEKGCRPNETTY---ILLIEGIGFAG 546



 Score = 73.2 bits (178), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 77/161 (47%), Gaps = 12/161 (7%)

Query: 76  EIFHKMRTEGL-----TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           ++  +M   GL     T NA+     + K+G+   A +L   +  KG  PDV+++  ++ 
Sbjct: 238 KLLEEMLARGLLPDMYTYNAI--IRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLR 295

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
           A+ + G+  E  ++   M + G  PN  TY++LI  L          + +A   L  M+ 
Sbjct: 296 AFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGR-----IDEAISVLKVMIE 350

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           K + P+  +Y  +  A  +  ++D A G++  M + G +PD
Sbjct: 351 KELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPD 391



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 77/160 (48%), Gaps = 8/160 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++ ++M+  G   + V    M  +L        AL +  Q+     MP V+ +T +IEA 
Sbjct: 168 QVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALTVLDQLLLDNCMPTVITYTILIEAT 227

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G   EA+++   MLA G+ P+ YTY  +I+G+         ++  A + +  +  KG
Sbjct: 228 IVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEG-----MVERAAELITSLTSKG 282

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
             P+  +Y  +  AF+   K DE   L+ +M ++G  P++
Sbjct: 283 CEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNK 322



 Score = 68.9 bits (167), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 58/112 (51%), Gaps = 5/112 (4%)

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
           PDV A+ AVI  +    Q + A +V  RM A G  P+  TY ++I  L      N + LG
Sbjct: 145 PDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLC-----NRRKLG 199

Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            A   L +++     P   TYT + EA +    ++EA  LL++M A+G +PD
Sbjct: 200 LALTVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPD 251



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 64/126 (50%), Gaps = 5/126 (3%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A Q+  ++K +G +PD+V +  +I +  +  +   AL V  ++L     P   TY +LI+
Sbjct: 166 ATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALTVLDQLLLDNCMPTVITYTILIE 225

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
             A   +G    + +A K L EM+ +G+ P+  TY A+     +   V+ A  L+  + +
Sbjct: 226 --ATIVEGG---INEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTS 280

Query: 226 KGFVPD 231
           KG  PD
Sbjct: 281 KGCEPD 286



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 67/157 (42%), Gaps = 8/157 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           EIF+K+R  G   N      M  AL   G    AL +   +  KG  PD + + ++I   
Sbjct: 413 EIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGIDPDEITYNSLISCL 472

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G  +EA+ +   M  SG  P   +Y +++ GL        + + DA     EM+ KG
Sbjct: 473 CRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLC-----KVRRIDDAIGMFAEMIEKG 527

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFV 229
            RPN  TY  + E    A    EA  L   + ++  +
Sbjct: 528 CRPNETTYILLIEGIGFAGWRTEAMELANSLFSRDVI 564



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 71/161 (44%), Gaps = 8/161 (4%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +++  +M + G   N V    +  +L + G   EA+ +   + +K   PD  ++  +I A
Sbjct: 307 EKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISA 366

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G+   A+ +   M+++G  P+   Y  ++  L    +GNA     A +   ++ G 
Sbjct: 367 LCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAAL--CKNGNAN---QALEIFNKLRGM 421

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           G  PN  +Y  +  A         A G++  M +KG  PDE
Sbjct: 422 GCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGIDPDE 462



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 6/99 (6%)

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             AG+  E+L     ++  G  P+      LIKG       N K +  A + +ME++   
Sbjct: 89  CKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFF-----NFKNIEKASR-VMEILESH 142

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             P+   Y AV   F +  +++ A  +L +MKA+GF+PD
Sbjct: 143 TEPDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPD 181


>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 602

 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 78/159 (49%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++  +MR +G   + V    + + + K+G   EA++    +   G  P+V+ H  ++ + 
Sbjct: 264 KLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSM 323

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
            S G+  +A R+   ML  G +P+  T+ +LI  L        ++LG A   L +M   G
Sbjct: 324 CSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLC-----RKRLLGRAIDVLEKMPKHG 378

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             PN+ +Y  +   F + +K+D A   L+ M ++G  PD
Sbjct: 379 CVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPD 417



 Score = 73.6 bits (179), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 5/140 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +  AL KDG    A+++  Q+  KG  P ++ +  VI+     G+ + A+ +   M   G
Sbjct: 424 LLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKG 483

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+  TY+ L++GL     G    + +A K   +M G  ++P+A TY A+     +AQ+
Sbjct: 484 LKPDIITYSTLLRGL-----GREGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQ 538

Query: 213 VDEARGLLQQMKAKGFVPDE 232
              A   L  M  KG  P E
Sbjct: 539 TSRAIDFLAYMVEKGCKPTE 558



 Score = 70.9 bits (172), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 83/164 (50%), Gaps = 12/164 (7%)

Query: 76  EIFHKMRTEG-----LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           EI +++ ++G     +T N V   D L+K G T  A++L  +++ KG  PD++ ++ ++ 
Sbjct: 439 EILNQLSSKGCSPVLITYNTV--IDGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLR 496

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
                G+  EA+++F  M    + P+A TY  ++ GL  A   +  I      +L  MV 
Sbjct: 497 GLGREGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAI-----DFLAYMVE 551

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
           KG +P   TYT + E        +EA  LL ++ ++GFV    A
Sbjct: 552 KGCKPTEATYTILIEGIADEGLAEEALELLNELCSRGFVKKSSA 595



 Score = 68.2 bits (165), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 68/139 (48%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +A   D    +A++L  +++ KG  PDVV +  +I      G+  EA++    M + G
Sbjct: 249 LIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYG 308

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN  T+ ++++ + +          DA++ L +M+ KG  P+  T+  +     R + 
Sbjct: 309 CKPNVITHNIILRSMCSTGR-----WMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRL 363

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +  A  +L++M   G VP+
Sbjct: 364 LGRAIDVLEKMPKHGCVPN 382



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 8/139 (5%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +     K G   +AL++  ++      PDVV +  ++ +   +G+ KEA+ V  R L   
Sbjct: 182 LIGGYCKSGEIDKALEVLERMSVA---PDVVTYNTILRSLCDSGKLKEAMEVLDRQLQRE 238

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  TY +LI+     A  N   +G A K L EM  KG +P+  TY  +     +  +
Sbjct: 239 CYPDVITYTILIE-----ATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGR 293

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +DEA   L  M + G  P+
Sbjct: 294 LDEAIKFLNNMPSYGCKPN 312



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 27/162 (16%)

Query: 97  LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
           L ++G   E L+   ++  +G +PDV+A T++I  +  +G+ K+A R+   +  SG  P+
Sbjct: 116 LVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEILENSGAVPD 175

Query: 157 AYTYAVLIKGLAAAADGNAKI---------------------------LGDAQKYLMEMV 189
             TY VLI G   + + +  +                           L +A + L   +
Sbjct: 176 VITYNVLIGGYCKSGEIDKALEVLERMSVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQL 235

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +   P+  TYT + EA      V +A  LL +M+ KG  PD
Sbjct: 236 QRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPD 277



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 5/138 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +  +L   G   EA+++  +   +   PDV+ +T +IEA  +     +A+++   M   G
Sbjct: 214 ILRSLCDSGKLKEAMEVLDRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKG 273

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  TY VLI G+          L +A K+L  M   G +PN  T+  +  +     +
Sbjct: 274 CKPDVVTYNVLINGICKEGR-----LDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGR 328

Query: 213 VDEARGLLQQMKAKGFVP 230
             +A  LL  M  KG  P
Sbjct: 329 WMDAERLLSDMLRKGCSP 346



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/158 (22%), Positives = 67/158 (42%), Gaps = 8/158 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++  KM   G   N++    +     ++     A++    +  +G  PD+V +  ++ A 
Sbjct: 369 DVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTAL 428

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+   A+ +  ++ + G +P   TY  +I GL             A + L EM  KG
Sbjct: 429 CKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEY-----AVELLEEMRRKG 483

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           ++P+  TY+ +     R  KVDEA  +   M+     P
Sbjct: 484 LKPDIITYSTLLRGLGREGKVDEAIKIFHDMEGLSIKP 521


>gi|297811615|ref|XP_002873691.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319528|gb|EFH49950.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 938

 Score = 76.6 bits (187), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 71/135 (52%), Gaps = 5/135 (3%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            L K G+T +A  +   ++ +G +PD V   A++  Y       +AL  +  M+ +G++P
Sbjct: 687 TLCKLGMTRKAAMVMEDMEARGFVPDTVTFNALMHGYFVGSHVGKALSTYSMMMEAGISP 746

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           N  TY  +I+GL+     +A ++ + +K+L EM  +GMRP+  TY A+     +     E
Sbjct: 747 NVATYNTIIRGLS-----DAGLIKEVEKWLSEMKSRGMRPDDFTYNALISGQAKIGNKKE 801

Query: 216 ARGLLQQMKAKGFVP 230
           +  +  +M A G VP
Sbjct: 802 SMTIYCEMIADGLVP 816



 Score = 73.9 bits (180), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 90/186 (48%), Gaps = 10/186 (5%)

Query: 51  SKLPPPYDPFKKVVDEEPTDPRNLQE--IFHKMRTEGLTNNAVK---MFDALSKDGLTHE 105
           S   P    F  +++    D + ++   +  +M   G+  N V    + D+L K      
Sbjct: 253 SGFDPDVVTFSSIINRLCKDGKVMEGGLLLREMEEMGVYPNHVTYTTLVDSLFKAKDYRH 312

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           AL L++Q+  +G   D+V +T ++     AG  +EA + F  +L     PN  TY  L+ 
Sbjct: 313 ALALYSQMVVRGIPVDLVVYTVLMAGLFKAGDLREAEKTFKMLLEDNEVPNVVTYTALVD 372

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           GL  A D     L  A+  + +M+ K + PN  TY+++   +V+   ++EA  L+++M+ 
Sbjct: 373 GLCKAGD-----LSSAEFIITQMLEKSVFPNVVTYSSMINGYVKKGMLEEAVSLMRKMED 427

Query: 226 KGFVPD 231
           +  VP+
Sbjct: 428 QNVVPN 433



 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 73/153 (47%), Gaps = 18/153 (11%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
            LS  GL  E  +  +++K +G  PD   + A+I   A  G  KE++ ++  M+A G+ P
Sbjct: 757 GLSDAGLIKEVEKWLSEMKSRGMRPDDFTYNALISGQAKIGNKKESMTIYCEMIADGLVP 816

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFV------- 208
              TY VLI   A       K+L  A + + EM  + + PN  TY  +            
Sbjct: 817 KTSTYNVLISEFAKV----GKML-QATELMKEMGKRRVSPNTSTYCTMISGLCKLCTHPE 871

Query: 209 -----RAQKVDEARGLLQQM-KAKGFVPDEKAV 235
                +A  + EA+GLL++M + KG++P  + +
Sbjct: 872 VEWNKKAMYLAEAKGLLKEMIEEKGYIPYNQTI 904



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 75/165 (45%), Gaps = 8/165 (4%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D R  ++ F  +  +    N V    + D L K G    A  +  Q+ +K   P+VV ++
Sbjct: 344 DLREAEKTFKMLLEDNEVPNVVTYTALVDGLCKAGDLSSAEFIITQMLEKSVFPNVVTYS 403

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
           ++I  Y   G  +EA+ +  +M    V PN +TY  +I GL  A  G  ++  +  K   
Sbjct: 404 SMINGYVKKGMLEEAVSLMRKMEDQNVVPNGFTYGTVIDGLFKA--GKQEVASEMSK--- 458

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           EM   G+  N     A+     R  ++ E +GL++ M +KG   D
Sbjct: 459 EMRLIGVEENNYILDALVNHLKRIGRIKEVKGLVKDMVSKGVTLD 503



 Score = 44.3 bits (103), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 5/109 (4%)

Query: 124 AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQK 183
            +  +I      G  ++A  V   M A G  P+  T+  L+ G    +      +G A  
Sbjct: 680 VYNTLIATLCKLGMTRKAAMVMEDMEARGFVPDTVTFNALMHGYFVGSH-----VGKALS 734

Query: 184 YLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
               M+  G+ PN  TY  +      A  + E    L +MK++G  PD+
Sbjct: 735 TYSMMMEAGISPNVATYNTIIRGLSDAGLIKEVEKWLSEMKSRGMRPDD 783



 Score = 43.9 bits (102), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 30/139 (21%), Positives = 63/139 (45%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M ++  K G     L+L+ ++K  G  P ++    V+      G+ KEA+ +  +M+   
Sbjct: 579 MMNSQRKQGDFEGILKLWDKMKSCGIKPSLMICNIVVGMLCEKGKMKEAIDILDQMMFME 638

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN  TY + +    ++    A  +    + L+     G++ +   Y  +     +   
Sbjct: 639 IHPNLTTYRIFLD--MSSKHKRADAIFKTHETLLSY---GIKLSRQVYNTLIATLCKLGM 693

Query: 213 VDEARGLLQQMKAKGFVPD 231
             +A  +++ M+A+GFVPD
Sbjct: 694 TRKAAMVMEDMEARGFVPD 712


>gi|255561341|ref|XP_002521681.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539072|gb|EEF40668.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 458

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 13/158 (8%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D +       EA++L   +++ G  PD   +  +++ Y    +G +A++VF +M   G
Sbjct: 231 LIDNVCNSKNLREAMRLLGILRECGFKPDCFVYNTIMKGYCMLSKGSDAIQVFKKMKEEG 290

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+  TY  LI GL+         + +A++YL  MV  G  P+A TYT++     R   
Sbjct: 291 IEPDLITYNTLIFGLSKGGR-----VSEAKRYLKIMVESGHFPDAVTYTSLMNGLCRKGD 345

Query: 213 VDEARGLLQQMKAKGFVPDEKA--------VKEALIDK 242
              A  LL+ M+ KG  P+            KE L++K
Sbjct: 346 ALGALALLEDMEMKGCSPNSCTYNTLLYGLCKERLLEK 383



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 72/146 (49%), Gaps = 12/146 (8%)

Query: 88  NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMR 147
           N  +K +  LSK     +A+Q+F ++K++G  PD++ +  +I   +  G+  EA R    
Sbjct: 264 NTIMKGYCMLSKGS---DAIQVFKKMKEEGIEPDLITYNTLIFGLSKGGRVSEAKRYLKI 320

Query: 148 MLASGVAPNAYTYAVLIKGLAAAAD--GNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFE 205
           M+ SG  P+A TY  L+ GL    D  G   +L D     MEM  KG  PN+ TY  +  
Sbjct: 321 MVESGHFPDAVTYTSLMNGLCRKGDALGALALLED-----MEM--KGCSPNSCTYNTLLY 373

Query: 206 AFVRAQKVDEARGLLQQMKAKGFVPD 231
              + + +++   L   +K  G + D
Sbjct: 374 GLCKERLLEKGIELYNVIKEGGMLLD 399



 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 63/144 (43%), Gaps = 8/144 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F KM+ EG+  + +    +   LSK G   EA +    + + GH PD V +T+++   
Sbjct: 281 QVFKKMKEEGIEPDLITYNTLIFGLSKGGRVSEAKRYLKIMVESGHFPDAVTYTSLMNGL 340

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G    AL +   M   G +PN+ TY  L+ GL        ++L    +    +   G
Sbjct: 341 CRKGDALGALALLEDMEMKGCSPNSCTYNTLLYGLC-----KERLLEKGIELYNVIKEGG 395

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEA 216
           M  +  +Y     A  R  KV EA
Sbjct: 396 MLLDTASYATFVRALCREGKVAEA 419



 Score = 54.7 bits (130), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/112 (25%), Positives = 55/112 (49%), Gaps = 5/112 (4%)

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
           P++V +T +I+   ++   +EA+R+   +   G  P+ + Y  ++KG    + G+     
Sbjct: 223 PNLVTYTILIDNVCNSKNLREAMRLLGILRECGFKPDCFVYNTIMKGYCMLSKGS----- 277

Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           DA +   +M  +G+ P+  TY  +     +  +V EA+  L+ M   G  PD
Sbjct: 278 DAIQVFKKMKEEGIEPDLITYNTLIFGLSKGGRVSEAKRYLKIMVESGHFPD 329



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 9/129 (6%)

Query: 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
           H+ L L     + G MP  V     + A  SAG+  +A+++   +      P+++TY  L
Sbjct: 139 HQILNLMV---NNGFMPTQVTVDIAVRALCSAGKEDDAVKLVKELSLKHSKPDSFTYNFL 195

Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGK-GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
           +K L        + L +   ++ EM     + PN  TYT + +    ++ + EA  LL  
Sbjct: 196 VKCLC-----KCRALSNVYSFIDEMRSSFDLEPNLVTYTILIDNVCNSKNLREAMRLLGI 250

Query: 223 MKAKGFVPD 231
           ++  GF PD
Sbjct: 251 LRECGFKPD 259



 Score = 41.2 bits (95), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 6/131 (4%)

Query: 104 HEALQLFAQIKDKGHMP-DVVAHTAVIEAYASAGQGKEALRVFMRMLAS--GVAPNAYTY 160
           +EA ++F  +     +P D+  H + +++Y+S     +++ +   M+ +     P   TY
Sbjct: 61  NEAKEIFNSLISTTRVPLDLRFHHSFLQSYSSISTIDDSISLLRHMIKTLPSFTPTISTY 120

Query: 161 AVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
            +L+     A D     L    + L  MV  G  P   T      A   A K D+A  L+
Sbjct: 121 HILLSQSCKAPDPT---LSPVHQILNLMVNNGFMPTQVTVDIAVRALCSAGKEDDAVKLV 177

Query: 221 QQMKAKGFVPD 231
           +++  K   PD
Sbjct: 178 KELSLKHSKPD 188


>gi|9502386|gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]
          Length = 1245

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 8/165 (4%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+F +M + G+  + +    + D L  +G   +AL++F  ++       +V +T +IE 
Sbjct: 413 EELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEG 472

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
               G+ ++A  +F  +   GV PN  TY V+I GL          L +A   L +M   
Sbjct: 473 MCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGS-----LSEANILLRKMEED 527

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK 236
           G  PN  TY  +  A +R   +  +  L+++MK+ GF  D  ++K
Sbjct: 528 GNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIK 572



 Score = 65.1 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/139 (25%), Positives = 69/139 (49%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D   K+G   EA +L+ ++  +G  P+++ +  +++ Y    +  EA  +   M+ + 
Sbjct: 294 LLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNK 353

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            +P+  T+  LIKG         K + D  K    +  +G+  NA TY+ + + F ++ K
Sbjct: 354 CSPDIVTFTSLIKGYCM-----VKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGK 408

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +  A  L Q+M + G +PD
Sbjct: 409 IKLAEELFQEMVSHGVLPD 427



 Score = 64.3 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 36/139 (25%), Positives = 68/139 (48%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + + + G T  AL L  +++++    DV  ++ +I++    G    A+ +F  M   G
Sbjct: 189 IVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKG 248

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           +  +  TY  L++GL  A   N     D    L +MV + + PN  T+  + + FV+  K
Sbjct: 249 IKSSVVTYNSLVRGLCKAGKWN-----DGALLLKDMVSREIVPNVITFNVLLDVFVKEGK 303

Query: 213 VDEARGLLQQMKAKGFVPD 231
           + EA  L ++M  +G  P+
Sbjct: 304 LQEANELYKEMITRGISPN 322



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D+L +DG    A+ LF +++ KG    VV + +++     AG+  +   +   M++  
Sbjct: 224 IIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSRE 283

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN  T+ VL+             L +A +   EM+ +G+ PN  TY  + + +    +
Sbjct: 284 IVPNVITFNVLLDVFVKEGK-----LQEANELYKEMITRGISPNIITYNTLMDGYCMQNR 338

Query: 213 VDEARGLLQQMKAKGFVPD 231
           + EA  +L  M      PD
Sbjct: 339 LSEANNMLDLMVRNKCSPD 357



 Score = 53.5 bits (127), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 37/152 (24%), Positives = 68/152 (44%), Gaps = 5/152 (3%)

Query: 80  KMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGK 139
           K+  E  T     +   L  +G   EA+ L  ++ + G  PDVV + +++     +G   
Sbjct: 141 KLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTS 200

Query: 140 EALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGT 199
            AL +  +M    V  + +TY+ +I  L      +A I         EM  KG++ +  T
Sbjct: 201 LALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAI-----SLFKEMETKGIKSSVVT 255

Query: 200 YTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           Y ++     +A K ++   LL+ M ++  VP+
Sbjct: 256 YNSLVRGLCKAGKWNDGALLLKDMVSREIVPN 287



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A  +  ++   G+ PD      +I+     G+  EA+ +  RM+ +G  P+  TY  ++ 
Sbjct: 132 AYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVN 191

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G+  + D +      A   L +M  + ++ +  TY+ + ++  R   +D A  L ++M+ 
Sbjct: 192 GICRSGDTSL-----ALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMET 246

Query: 226 KG 227
           KG
Sbjct: 247 KG 248



 Score = 39.7 bits (91), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 38/66 (57%), Gaps = 1/66 (1%)

Query: 181 AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
           A++   EM+ +G+ PN  TY+++ + F +  ++DEA  +L  M  KG   D + +   L+
Sbjct: 718 AEELHKEMIQRGIAPNTITYSSLIDGFCKENRLDEANQMLDLMVTKG-DSDIRYLLAGLM 776

Query: 241 DKRGQG 246
            K+ +G
Sbjct: 777 RKKRKG 782


>gi|357142605|ref|XP_003572629.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 543

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 76/157 (48%), Gaps = 5/157 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +  AL   G   +AL +F  +  +G  P VV ++ +++A       K+A+ +   M + G
Sbjct: 166 LIRALCVRGCVLDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYKQAVVLLDEMRSKG 225

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P+  TY VLI  + +  D     +G+A K L  +   G +P+A TYT V ++   +++
Sbjct: 226 CEPDIVTYNVLINAMCSQGD-----VGEALKVLNSLPSYGCKPDAVTYTPVLKSLCSSER 280

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRG 249
            +EA  LL +M +    PDE      +     +GF G
Sbjct: 281 WEEADKLLTKMFSNDCAPDEVTFNAVITSLCQKGFVG 317



 Score = 74.3 bits (181), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 89/193 (46%), Gaps = 37/193 (19%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F  M   G + + V    + DA  K+    +A+ L  +++ KG  PD+V +  +I A  
Sbjct: 182 VFDDMLHRGCSPSVVTYSILLDATCKESGYKQAVVLLDEMRSKGCEPDIVTYNVLINAMC 241

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAA-----ADG--------------- 173
           S G   EAL+V   + + G  P+A TY  ++K L ++     AD                
Sbjct: 242 SQGDVGEALKVLNSLPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMFSNDCAPDEV 301

Query: 174 --NAKI--------LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA----RGL 219
             NA I        +G A K L +M   G  P+  TY+++ +   + ++VDEA    + L
Sbjct: 302 TFNAVITSLCQKGFVGRATKVLAQMSEHGCTPDIITYSSIMDGLCKERRVDEAIKLLKEL 361

Query: 220 LQQMKAKGFVPDE 232
           L +M +K  +PD+
Sbjct: 362 LAEMVSKNCIPDQ 374



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 74/156 (47%), Gaps = 12/156 (7%)

Query: 86  LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVF 145
           +T NAV    +L + G    A ++ AQ+ + G  PD++ ++++++      +  EA+++ 
Sbjct: 301 VTFNAV--ITSLCQKGFVGRATKVLAQMSEHGCTPDIITYSSIMDGLCKERRVDEAIKLL 358

Query: 146 MRMLASGVA----PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYT 201
             +LA  V+    P+  T+  +I  L         +   A K + EM   G  P+  TY 
Sbjct: 359 KELLAEMVSKNCIPDQVTFNTIITSLCQKG-----LFDRAIKVVDEMSEHGCIPDITTYN 413

Query: 202 AVFEAFV-RAQKVDEARGLLQQMKAKGFVPDEKAVK 236
            + + F+ ++ K +EA  LL  M + G  PD    K
Sbjct: 414 CIVDGFLCKSCKTEEALDLLNLMVSNGLCPDTTTYK 449



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 73/164 (44%), Gaps = 11/164 (6%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEAL----QLFAQIKDKGHMPDVVAHTAV 128
           ++  +M   G T + +    + D L K+    EA+    +L A++  K  +PD V    +
Sbjct: 321 KVLAQMSEHGCTPDIITYSSIMDGLCKERRVDEAIKLLKELLAEMVSKNCIPDQVTFNTI 380

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I +    G    A++V   M   G  P+  TY  ++ G    +        +A   L  M
Sbjct: 381 ITSLCQKGLFDRAIKVVDEMSEHGCIPDITTYNCIVDGFLCKSCKTE----EALDLLNLM 436

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           V  G+ P+  TY ++     R  +++ A G+ ++++A G  PD+
Sbjct: 437 VSNGLCPDTTTYKSLAFGLSREDEMERAIGMFRRVQAMGLSPDK 480



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/163 (21%), Positives = 79/163 (48%), Gaps = 9/163 (5%)

Query: 74  LQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           L+E+  +M ++    + V    +  +L + GL   A+++  ++ + G +PD+  +  +++
Sbjct: 358 LKELLAEMVSKNCIPDQVTFNTIITSLCQKGLFDRAIKVVDEMSEHGCIPDITTYNCIVD 417

Query: 131 AY-ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
            +   + + +EAL +   M+++G+ P+  TY  L  GL+   D   + +G  ++    + 
Sbjct: 418 GFLCKSCKTEEALDLLNLMVSNGLCPDTTTYKSLAFGLSRE-DEMERAIGMFRR----VQ 472

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
             G+ P+   Y A+     +  + D A      M + G +PDE
Sbjct: 473 AMGLSPDKMLYNAILLGLCKKWRTDLAIDFFAYMVSNGCMPDE 515



 Score = 54.3 bits (129), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 69/161 (42%), Gaps = 8/161 (4%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++ + + + G   +AV    +  +L       EA +L  ++      PD V   AVI + 
Sbjct: 251 KVLNSLPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMFSNDCAPDEVTFNAVITSL 310

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAA--ADGNAKILGDAQKYLMEMVG 190
              G    A +V  +M   G  P+  TY+ ++ GL      D   K+L   ++ L EMV 
Sbjct: 311 CQKGFVGRATKVLAQMSEHGCTPDIITYSSIMDGLCKERRVDEAIKLL---KELLAEMVS 367

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           K   P+  T+  +  +  +    D A  ++ +M   G +PD
Sbjct: 368 KNCIPDQVTFNTIITSLCQKGLFDRAIKVVDEMSEHGCIPD 408



 Score = 50.4 bits (119), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 68/176 (38%), Gaps = 25/176 (14%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGL--------------------THEALQL 109
           D      I   +  +GL + A+K+ D +S+ G                     T EAL L
Sbjct: 373 DQVTFNTIITSLCQKGLFDRAIKVVDEMSEHGCIPDITTYNCIVDGFLCKSCKTEEALDL 432

Query: 110 FAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169
              +   G  PD   + ++    +   + + A+ +F R+ A G++P+   Y  ++ GL  
Sbjct: 433 LNLMVSNGLCPDTTTYKSLAFGLSREDEMERAIGMFRRVQAMGLSPDKMLYNAILLGLCK 492

Query: 170 AADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
               +  I      +   MV  G  P+  TY  + E       ++EA+ LL  +  
Sbjct: 493 KWRTDLAI-----DFFAYMVSNGCMPDESTYIILVEGIAYEGFLEEAKELLGNLSC 543


>gi|297844992|ref|XP_002890377.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336219|gb|EFH66636.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 537

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 9/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
            F++M   G   + +    +   LS+     EA   F  +KD+   PDV+ +T ++  + 
Sbjct: 208 CFNRMEDYGCVPDQIAFSIVISNLSRKRRASEAQSFFDSLKDRFE-PDVIVYTNLVRGWC 266

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            AG+  EA +VF  M  +G+ PN YTY+++I  L          +  A     +M+  G 
Sbjct: 267 RAGEISEAEKVFKDMKLAGIEPNVYTYSIVIDALCRCGQ-----ISRAHDVFADMLDSGC 321

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            PNA T+  +    V+A + ++   +  QMK  G  PD
Sbjct: 322 APNAITFNNLMRVHVKAGRPEKVLQVYNQMKKLGCEPD 359



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 73/160 (45%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +++F  M+  G+  N      + DAL + G    A  +FA + D G  P+ +    ++  
Sbjct: 275 EKVFKDMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRV 334

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +  AG+ ++ L+V+ +M   G  P+  TY  LI+      D N   L +A K L  M+ K
Sbjct: 335 HVKAGRPEKVLQVYNQMKKLGCEPDTITYNFLIE--THCRDEN---LENAVKVLNTMIKK 389

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
               NA T+  +F    + + V+ A  +  +M      P+
Sbjct: 390 KCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCEPN 429



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/160 (21%), Positives = 65/160 (40%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAVKMFDALS---KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
            ++F  M   G   NA+   + +    K G   + LQ++ Q+K  G  PD + +  +IE 
Sbjct: 310 HDVFADMLDSGCAPNAITFNNLMRVHVKAGRPEKVLQVYNQMKKLGCEPDTITYNFLIET 369

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +      + A++V   M+      NA T+  + + +    D N      A +   +M+  
Sbjct: 370 HCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDVNG-----AHRMYSKMMEA 424

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              PN  TY  +   F  ++  D    + + M  K   P+
Sbjct: 425 KCEPNTVTYNILMRMFAGSKSTDMVLKMKKDMDDKEVEPN 464


>gi|255660932|gb|ACU25635.1| pentatricopeptide repeat-containing protein [Rhaphithamnus
           venustus]
          Length = 484

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 80/166 (48%), Gaps = 8/166 (4%)

Query: 78  FHKMRTEGL--TNNAVK-MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F+KM +EG+  T +    M       G    A + F  +K++   PDV+ +  +I  Y  
Sbjct: 138 FNKMLSEGIEPTRHTFNIMIWGFFLSGKVETANRFFEDMKNREITPDVITYNTMINGYYR 197

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
             + +EA + F+ M    + P   TY  LIKG  +        + DA + + EM G G++
Sbjct: 198 VKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQ-----VDDALRLVEEMKGYGIK 252

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
            NA TY+ +      A+K+ EAR +L++M  K   P + ++   LI
Sbjct: 253 ANAITYSTLLPGLCNAEKMSEARSILKEMVDKYIAPTDNSIFMRLI 298



 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 79/168 (47%), Gaps = 30/168 (17%)

Query: 91  VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           V M D+    G+  E+++LF ++ + G    + ++ A+ +  +  G+   A R F +ML+
Sbjct: 84  VLMIDSYGNGGIVQESVKLFQKMDELGVERTIKSYDALFKVISRRGRYMMAKRYFNKMLS 143

Query: 151 SGVAPNAYTYAVLIKGLAAAA----------------------------DGNAKI--LGD 180
            G+ P  +T+ ++I G   +                             +G  ++  + +
Sbjct: 144 EGIEPTRHTFNIMIWGFFLSGKVETANRFFEDMKNREITPDVITYNTMINGYYRVKKMEE 203

Query: 181 AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
           A+KY +EM G+ + P   TYT + + +V   +VD+A  L+++MK  G 
Sbjct: 204 AEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGYGI 251



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 82/176 (46%), Gaps = 13/176 (7%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
            F  M+   +T + +    M +   +     EA + F ++K +   P VV +T +I+ Y 
Sbjct: 172 FFEDMKNREITPDVITYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTYTTLIKGYV 231

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
           S  Q  +ALR+   M   G+  NA TY+ L+ GL      NA+ + +A+  L EMV K +
Sbjct: 232 SVDQVDDALRLVEEMKGYGIKANAITYSTLLPGLC-----NAEKMSEARSILKEMVDKYI 286

Query: 194 RP-NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID---KRGQ 245
            P +   +  +     +A  +D A  +L+ M  +  VP E      LI+   K GQ
Sbjct: 287 APTDNSIFMRLISGQCKAGNLDAAADVLKAM-IRLSVPTEAGHYGVLIENYCKAGQ 341



 Score = 46.2 bits (108), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 65/141 (46%), Gaps = 5/141 (3%)

Query: 91  VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           +K+ + L +    + A  +   +  KG   D      +I++Y + G  +E++++F +M  
Sbjct: 49  LKIIEILGRASKLNHARCILLDMPKKGLEWDEDMWVLMIDSYGNGGIVQESVKLFQKMDE 108

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
            GV     +Y  L K ++    G   +   A++Y  +M+ +G+ P   T+  +   F  +
Sbjct: 109 LGVERTIKSYDALFKVISRR--GRYMM---AKRYFNKMLSEGIEPTRHTFNIMIWGFFLS 163

Query: 211 QKVDEARGLLQQMKAKGFVPD 231
            KV+ A    + MK +   PD
Sbjct: 164 GKVETANRFFEDMKNREITPD 184


>gi|334182978|ref|NP_001185123.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
 gi|332193283|gb|AEE31404.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 811

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 80/158 (50%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           ++ +M  +G++ N V    +   L +DG  +EA  ++ QI  +G  P +V ++++I+ + 
Sbjct: 378 VYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFC 437

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G  +    ++  M+  G  P+   Y VL+ GL+        ++  A ++ ++M+G+ +
Sbjct: 438 KCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQG-----LMLHAMRFSVKMLGQSI 492

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           R N   + ++ + + R  + DEA  + + M   G  PD
Sbjct: 493 RLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPD 530



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F  M   G+  + +    + D   K G+     +LF+Q   KG   DVV  ++ I+ Y
Sbjct: 307 DLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVY 366

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             +G    A  V+ RML  G++PN  TY +LIKGL    DG    + +A     +++ +G
Sbjct: 367 VKSGDLATASVVYKRMLCQGISPNVVTYTILIKGL--CQDGR---IYEAFGMYGQILKRG 421

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           M P+  TY+++ + F +   +     L + M   G+ PD
Sbjct: 422 MEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPD 460



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 5/126 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +A + F  + +    PD+V +  +I  Y S  +  EA R+F  +  +   PN  T  +LI
Sbjct: 590 DASKFFNNLIEGKMEPDIVTYNTMICGYCSLRRLDEAERIFELLKVTPFGPNTVTLTILI 649

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
             L    D +  I     +    M  KG +PNA TY  + + F ++  ++ +  L ++M+
Sbjct: 650 HVLCKNNDMDGAI-----RMFSIMAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEMQ 704

Query: 225 AKGFVP 230
            KG  P
Sbjct: 705 EKGISP 710



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 5/127 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA ++F  +K     P+ V  T +I           A+R+F  M   G  PNA TY  L+
Sbjct: 625 EAERIFELLKVTPFGPNTVTLTILIHVLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCLM 684

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
              + + D     +  + K   EM  KG+ P+  +Y+ + +   +  +VDEA  +  Q  
Sbjct: 685 DWFSKSVD-----IEGSFKLFEEMQEKGISPSIVSYSIIIDGLCKRGRVDEATNIFHQAI 739

Query: 225 AKGFVPD 231
               +PD
Sbjct: 740 DAKLLPD 746



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 73/161 (45%), Gaps = 8/161 (4%)

Query: 75  QEIFHKMRTEGLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + IF  ++      N V +      L K+     A+++F+ + +KG  P+ V +  +++ 
Sbjct: 627 ERIFELLKVTPFGPNTVTLTILIHVLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCLMDW 686

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           ++ +   + + ++F  M   G++P+  +Y+++I GL          + +A     + +  
Sbjct: 687 FSKSVDIEGSFKLFEEMQEKGISPSIVSYSIIIDGLCKRGR-----VDEATNIFHQAIDA 741

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
            + P+   Y  +   + +  ++ EA  L + M   G  PD+
Sbjct: 742 KLLPDVVAYAILIRGYCKVGRLVEAALLYEHMLRNGVKPDD 782


>gi|255660910|gb|ACU25624.1| pentatricopeptide repeat-containing protein [Mulguraea scoparia]
          Length = 484

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 77/166 (46%), Gaps = 8/166 (4%)

Query: 78  FHKMRTEGLT---NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F+KM +EG+         +       G    A + F  +K +   PDVV +  +I  Y  
Sbjct: 138 FNKMLSEGIEPTRXTFXVLIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYR 197

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
             + +EA + F+ M    + P   TY  LIKG  +        + DA + + EM G G++
Sbjct: 198 VKKXEEAEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQ-----VDDALRLVEEMKGFGIK 252

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
           PNA  Y+ +      A+K+ EAR +L++M  K   P + ++   LI
Sbjct: 253 PNAIXYSTLLPGLCNAEKMSEARSILKEMMDKYLAPTDNSIFMRLI 298



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 79/171 (46%), Gaps = 30/171 (17%)

Query: 91  VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
           V M D+  K G+  E+++LF ++++ G    + ++ A+ +     G+   A R F +ML+
Sbjct: 84  VMMIDSYGKQGIVQESVKLFQKMEELGVERTIKSYDALFKVILRRGRYMMAKRYFNKMLS 143

Query: 151 SGVAPNAYTYAVLIKGLAAA----------------------ADGNAKILG--------D 180
            G+ P   T+ VLI G   +                         N  I G        +
Sbjct: 144 EGIEPTRXTFXVLIWGFFLSGKVETANRFFEDMKSREISPDVVTYNTMINGYYRVKKXEE 203

Query: 181 AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           A+KY +EM G+ + P   TYT + + +V   +VD+A  L+++MK  G  P+
Sbjct: 204 AEKYFVEMKGRNIEPTVVTYTTLIKGYVSVDQVDDALRLVEEMKGFGIKPN 254



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 75/154 (48%), Gaps = 15/154 (9%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
            F  M++  ++ + V    M +   +     EA + F ++K +   P VV +T +I+ Y 
Sbjct: 172 FFEDMKSREISPDVVTYNTMINGYYRVKKXEEAEKYFVEMKGRNIEPTVVTYTTLIKGYV 231

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
           S  Q  +ALR+   M   G+ PNA  Y+ L+ GL      NA+ + +A+  L EM+ K +
Sbjct: 232 SVDQVDDALRLVEEMKGFGIKPNAIXYSTLLPGLC-----NAEKMSEARSILKEMMDKYL 286

Query: 194 RPNAGTYTAVFEAFVRAQ----KVDEARGLLQQM 223
            P   T  ++F   + +Q     +D A  +L+ M
Sbjct: 287 AP---TDNSIFMRLITSQCKSGNLDAASDVLKAM 317



 Score = 47.0 bits (110), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 43/189 (22%), Positives = 79/189 (41%), Gaps = 10/189 (5%)

Query: 48  NTKSKLPPPYDP--FKKVVDEEPTDPRNLQEIFHKMRTEGLTNN---AVKMFDALSKDGL 102
           NT   L P +D      V+    T    LQ      R+    +N    +K+ + L +   
Sbjct: 1   NTIRNLXPSFDHELVYNVLHSAKTSEHALQFFRWVERSNLFEHNRETHLKIIEILGRASK 60

Query: 103 THEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAV 162
            + A  +   +  KG   D      +I++Y   G  +E++++F +M   GV     +Y  
Sbjct: 61  LNHARCILLDMPKKGLEWDEDMWVMMIDSYGKQGIVQESVKLFQKMEELGVERTIKSYDA 120

Query: 163 LIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
           L K +     G   +   A++Y  +M+ +G+ P   T+  +   F  + KV+ A    + 
Sbjct: 121 LFKVILRR--GRYMM---AKRYFNKMLSEGIEPTRXTFXVLIWGFFLSGKVETANRFFED 175

Query: 223 MKAKGFVPD 231
           MK++   PD
Sbjct: 176 MKSREISPD 184


>gi|240254191|ref|NP_174467.4| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
 gi|357528959|sp|Q9C6S6.2|PPR67_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g31840
 gi|332193282|gb|AEE31403.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 840

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 80/158 (50%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           ++ +M  +G++ N V    +   L +DG  +EA  ++ QI  +G  P +V ++++I+ + 
Sbjct: 378 VYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFC 437

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G  +    ++  M+  G  P+   Y VL+ GL+        ++  A ++ ++M+G+ +
Sbjct: 438 KCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQG-----LMLHAMRFSVKMLGQSI 492

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           R N   + ++ + + R  + DEA  + + M   G  PD
Sbjct: 493 RLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPD 530



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F  M   G+  + +    + D   K G+     +LF+Q   KG   DVV  ++ I+ Y
Sbjct: 307 DLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVY 366

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             +G    A  V+ RML  G++PN  TY +LIKGL    DG    + +A     +++ +G
Sbjct: 367 VKSGDLATASVVYKRMLCQGISPNVVTYTILIKGL--CQDGR---IYEAFGMYGQILKRG 421

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           M P+  TY+++ + F +   +     L + M   G+ PD
Sbjct: 422 MEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPD 460



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 5/126 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +A + F  + +    PD+V +  +I  Y S  +  EA R+F  +  +   PN  T  +LI
Sbjct: 619 DASKFFNNLIEGKMEPDIVTYNTMICGYCSLRRLDEAERIFELLKVTPFGPNTVTLTILI 678

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
             L    D +  I     +    M  KG +PNA TY  + + F ++  ++ +  L ++M+
Sbjct: 679 HVLCKNNDMDGAI-----RMFSIMAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEMQ 733

Query: 225 AKGFVP 230
            KG  P
Sbjct: 734 EKGISP 739



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 5/127 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA ++F  +K     P+ V  T +I           A+R+F  M   G  PNA TY  L+
Sbjct: 654 EAERIFELLKVTPFGPNTVTLTILIHVLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCLM 713

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
              + + D     +  + K   EM  KG+ P+  +Y+ + +   +  +VDEA  +  Q  
Sbjct: 714 DWFSKSVD-----IEGSFKLFEEMQEKGISPSIVSYSIIIDGLCKRGRVDEATNIFHQAI 768

Query: 225 AKGFVPD 231
               +PD
Sbjct: 769 DAKLLPD 775



 Score = 52.8 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/157 (25%), Positives = 63/157 (40%), Gaps = 30/157 (19%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EAL++F  +   G  PDV   T V+      G+ +EAL +F RM   G+ P+A  Y  LI
Sbjct: 514 EALKVFRLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMGLEPDALAYCTLI 573

Query: 165 KGL----------------------AAAADGNAKI--------LGDAQKYLMEMVGKGMR 194
                                    A  A  N  I        + DA K+   ++   M 
Sbjct: 574 DAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDASKFFNNLIEGKME 633

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           P+  TY  +   +   +++DEA  + + +K   F P+
Sbjct: 634 PDIVTYNTMICGYCSLRRLDEAERIFELLKVTPFGPN 670



 Score = 50.8 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 73/161 (45%), Gaps = 8/161 (4%)

Query: 75  QEIFHKMRTEGLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + IF  ++      N V +      L K+     A+++F+ + +KG  P+ V +  +++ 
Sbjct: 656 ERIFELLKVTPFGPNTVTLTILIHVLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCLMDW 715

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           ++ +   + + ++F  M   G++P+  +Y+++I GL          + +A     + +  
Sbjct: 716 FSKSVDIEGSFKLFEEMQEKGISPSIVSYSIIIDGLCKRGR-----VDEATNIFHQAIDA 770

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
            + P+   Y  +   + +  ++ EA  L + M   G  PD+
Sbjct: 771 KLLPDVVAYAILIRGYCKVGRLVEAALLYEHMLRNGVKPDD 811



 Score = 46.2 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 5/120 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D LSK GL   A++   ++  +    +VV   ++I+ +    +  EAL+VF  M   G
Sbjct: 467 LVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYG 526

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+  T+  +++   +  +G    L +A      M   G+ P+A  Y  + +AF +  K
Sbjct: 527 IKPDVATFTTVMR--VSIMEGR---LEEALFLFFRMFKMGLEPDALAYCTLIDAFCKHMK 581


>gi|224107129|ref|XP_002314384.1| predicted protein [Populus trichocarpa]
 gi|222863424|gb|EEF00555.1| predicted protein [Populus trichocarpa]
          Length = 764

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 80/164 (48%), Gaps = 8/164 (4%)

Query: 72  RNLQEIFHKMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R   E+++ M+ +G    T     + D   K G  ++A QL  ++K  GH P VV + +V
Sbjct: 462 RETYELYYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTMGHHPTVVTYGSV 521

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           ++  A   +  EA  +F    ++G+  N   Y+ LI G      G    + +A   + EM
Sbjct: 522 VDGLAKIDRLDEAYMLFEEAKSNGIELNQVIYSSLIDGF-----GKVGRVDEAYLVMEEM 576

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           + KG+ PN  T+  + +  V+A++++EA    Q MK     P++
Sbjct: 577 MQKGLTPNVYTWNCLLDGLVKAEEINEALVCFQSMKDLKCTPNQ 620



 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F + ++ G+  N V    + D   K G   EA  +  ++  KG  P+V     +++   
Sbjct: 537 LFEEAKSNGIELNQVIYSSLIDGFGKVGRVDEAYLVMEEMMQKGLTPNVYTWNCLLDGLV 596

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            A +  EAL  F  M      PN  TY +LI GL      N   +     +  EM  +G+
Sbjct: 597 KAEEINEALVCFQSMKDLKCTPNQITYCILINGLCKVRKFNKAFV-----FWQEMQKQGL 651

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +PN  TYTA+     ++  V +A  L ++ +A G +PD
Sbjct: 652 KPNTITYTAMISGLAKSGNVAQASSLFERFRASGGIPD 689



 Score = 63.9 bits (154), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 6/151 (3%)

Query: 95  DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           D + K G T +   LF +IK +G +PD  +++ +I +   AG  +E   ++  M   G  
Sbjct: 418 DCVFKAGETEKGRALFEEIKARGFLPDTRSYSILIHSLVKAGFARETYELYYAMKDQGCV 477

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
            +   Y  +I G   +   N      A + L EM   G  P   TY +V +   +  ++D
Sbjct: 478 LDTRAYNTVIDGFCKSGKVNK-----AYQLLEEMKTMGHHPTVVTYGSVVDGLAKIDRLD 532

Query: 215 EARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
           EA  L ++ K+ G +   + +  +LID  G+
Sbjct: 533 EAYMLFEEAKSNG-IELNQVIYSSLIDGFGK 562



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 5/142 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M D L K     EA  +F  +  K   PD     ++I+     G+  +A R++ RML + 
Sbjct: 311 MIDRLCKAQKLDEACSIFEGMDYKVCSPDGATFCSLIDGLGKQGRVDDAYRIYERMLDAD 370

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN   Y  LI+              D  K   EM+  G  P+        +   +A +
Sbjct: 371 QIPNVVVYTSLIRNFFKCDRKE-----DGHKMYKEMMRSGCSPDLMLLNTYMDCVFKAGE 425

Query: 213 VDEARGLLQQMKAKGFVPDEKA 234
            ++ R L +++KA+GF+PD ++
Sbjct: 426 TEKGRALFEEIKARGFLPDTRS 447



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 79/184 (42%), Gaps = 10/184 (5%)

Query: 52  KLPPPYDPFKKVVD--EEPTDPRNLQEIFHKMRTEGLTNNA---VKMFDALSKDGLTHEA 106
           K  P +  +  ++    E  +   +  +F++M+  G   N      +    S++G    A
Sbjct: 56  KFRPAFSAYTTLIGALSEVGESDRMLALFNQMQELGYEVNVHLLTTLIRVFSREGRVDAA 115

Query: 107 LQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKG 166
           L L  ++K      D+V +   I+ +   G+   A + F  M A+G+ P+  TY  ++  
Sbjct: 116 LSLLDEMKSNTFDADIVLYNVCIDCFGKVGKVDMAWKFFHEMKANGLVPDDVTYTSMMGV 175

Query: 167 LAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK 226
           L       A  L +A +   +M      P A  Y  +   +  A K DEA  LL++ +AK
Sbjct: 176 LC-----KANRLDEAVEIFEQMEQNRQVPCAYAYNTMIMGYGSAGKFDEAYSLLERQRAK 230

Query: 227 GFVP 230
           G +P
Sbjct: 231 GCIP 234



 Score = 61.2 bits (147), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 84/202 (41%), Gaps = 33/202 (16%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           + FH+M+  GL  + V    M   L K     EA+++F Q++    +P   A+  +I  Y
Sbjct: 152 KFFHEMKANGLVPDDVTYTSMMGVLCKANRLDEAVEIFEQMEQNRQVPCAYAYNTMIMGY 211

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA--AAADGNAKILGDAQK------- 183
            SAG+  EA  +  R  A G  P+   Y  ++  L      D   +I  + ++       
Sbjct: 212 GSAGKFDEAYSLLERQRAKGCIPSVVAYNCILTCLGKKGKTDKALRIFEEMKRDAMPNLP 271

Query: 184 ---YLMEMVGK-----------------GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
               ++ M+ K                 G+ PN  T   + +   +AQK+DEA  + + M
Sbjct: 272 TYNIIIGMLCKAGNVEAAFKVRDAMKEAGLFPNVRTINIMIDRLCKAQKLDEACSIFEGM 331

Query: 224 KAKGFVPDEKAVKEALIDKRGQ 245
             K   PD  A   +LID  G+
Sbjct: 332 DYKVCSPD-GATFCSLIDGLGK 352



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 66/154 (42%), Gaps = 8/154 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +M  +GLT N      + D L K    +EAL  F  +KD    P+ + +  +I    
Sbjct: 572 VMEEMMQKGLTPNVYTWNCLLDGLVKAEEINEALVCFQSMKDLKCTPNQITYCILINGLC 631

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
              +  +A   +  M   G+ PN  TY  +I GLA +  GN   +  A          G 
Sbjct: 632 KVRKFNKAFVFWQEMQKQGLKPNTITYTAMISGLAKS--GN---VAQASSLFERFRASGG 686

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
            P++ +Y A+ E    A +  +A  L ++ + KG
Sbjct: 687 IPDSASYNAMIEGLSIANRALDAYQLFEETRLKG 720



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 58/130 (44%), Gaps = 5/130 (3%)

Query: 95  DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           D   K G    A + F ++K  G +PD V +T+++     A +  EA+ +F +M  +   
Sbjct: 139 DCFGKVGKVDMAWKFFHEMKANGLVPDDVTYTSMMGVLCKANRLDEAVEIFEQMEQNRQV 198

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
           P AY Y  +I G      G+A    +A   L     KG  P+   Y  +     +  K D
Sbjct: 199 PCAYAYNTMIMGY-----GSAGKFDEAYSLLERQRAKGCIPSVVAYNCILTCLGKKGKTD 253

Query: 215 EARGLLQQMK 224
           +A  + ++MK
Sbjct: 254 KALRIFEEMK 263



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/144 (20%), Positives = 66/144 (45%), Gaps = 5/144 (3%)

Query: 91  VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
             + D L K G   +A +++ ++ D   +P+VV +T++I  +    + ++  +++  M+ 
Sbjct: 344 CSLIDGLGKQGRVDDAYRIYERMLDADQIPNVVVYTSLIRNFFKCDRKEDGHKMYKEMMR 403

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
           SG +P+       +  +  A +         +    E+  +G  P+  +Y+ +  + V+A
Sbjct: 404 SGCSPDLMLLNTYMDCVFKAGETEK-----GRALFEEIKARGFLPDTRSYSILIHSLVKA 458

Query: 211 QKVDEARGLLQQMKAKGFVPDEKA 234
               E   L   MK +G V D +A
Sbjct: 459 GFARETYELYYAMKDQGCVLDTRA 482



 Score = 49.7 bits (117), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 71/143 (49%), Gaps = 8/143 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
            F  M+    T N +    + + L K    ++A   + +++ +G  P+ + +TA+I   A
Sbjct: 607 CFQSMKDLKCTPNQITYCILINGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTAMISGLA 666

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            +G   +A  +F R  ASG  P++ +Y  +I+GL+ A   N  +  DA +   E   KG 
Sbjct: 667 KSGNVAQASSLFERFRASGGIPDSASYNAMIEGLSIA---NRAL--DAYQLFEETRLKGC 721

Query: 194 RPNAGTYTAVFEAFVRAQKVDEA 216
             +  T  A+ +A  +A+ +++A
Sbjct: 722 SIHTKTCVALLDALHKAECLEQA 744



 Score = 49.3 bits (116), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 65/162 (40%), Gaps = 8/162 (4%)

Query: 74  LQEIFHKMRTEGL--TN-NAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           L++I  +M   G   TN   V++  +  K     EA  L   ++     P   A+T +I 
Sbjct: 10  LEQILGEMSIAGFGPTNYTCVELVASCVKSRKLIEAFDLLQMMRHFKFRPAFSAYTTLIG 69

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
           A +  G+    L +F +M   G   N +    LI+  +     +A     A   L EM  
Sbjct: 70  ALSEVGESDRMLALFNQMQELGYEVNVHLLTTLIRVFSREGRVDA-----ALSLLDEMKS 124

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
                +   Y    + F +  KVD A     +MKA G VPD+
Sbjct: 125 NTFDADIVLYNVCIDCFGKVGKVDMAWKFFHEMKANGLVPDD 166


>gi|224135699|ref|XP_002322139.1| predicted protein [Populus trichocarpa]
 gi|222869135|gb|EEF06266.1| predicted protein [Populus trichocarpa]
          Length = 866

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 79/162 (48%), Gaps = 13/162 (8%)

Query: 76  EIFHKMRTEG-----LTNNAVKMFDALSKDGLTHEAL-QLFAQIKDKGHMPDVVAHTAVI 129
           E+  +M+ E      LT N V   ++ ++ GL  E L  LFA+++ +G  PD+V +  ++
Sbjct: 199 ELLERMKKERVSPSILTYNTV--INSCARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLL 256

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
            A ++ G G EA  VF  M   GV P+  TY  L+        G    L    + L EM 
Sbjct: 257 CACSNRGLGDEAEMVFRTMNEGGVVPDITTYTYLVDTF-----GKLNRLDKVSELLKEMA 311

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
             G  P   +Y  + EA+ R   +++A G+ + M+  G VP+
Sbjct: 312 STGNVPEISSYNVLLEAYARIGNIEDATGVFRLMQEAGCVPN 353



 Score = 63.2 bits (152), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 73/166 (43%), Gaps = 8/166 (4%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +FH M  E +  N      +  A  K GL  +A ++   + +KG +P   A+T VIEAY 
Sbjct: 411 LFHDMAEENVEPNMETYEGLIFACGKGGLHDDAKKILLHMSEKGMIPSSKAYTGVIEAYG 470

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
            A   +EAL     M   G  P   TY  LI   A        +  + +  L++M   G+
Sbjct: 471 QAAMYEEALVTLNTMNEMGSKPTIETYNTLIYMFARGG-----LYKETEAILLKMGDFGV 525

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
                ++  V E F +  + +EA     +M+    VPDE+ ++  L
Sbjct: 526 ARERDSFNGVIEGFRQGGQFEEAIKAYVEMEKSRLVPDERTLEAVL 571



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 57/238 (23%), Positives = 92/238 (38%), Gaps = 47/238 (19%)

Query: 50  KSKLPPPYDPFKKVVDEEP---TDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLT 103
           K ++ P    +  V++       D   L  +F +MR EG+  + V    +  A S  GL 
Sbjct: 206 KERVSPSILTYNTVINSCARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLCACSNRGLG 265

Query: 104 HEALQLFAQIKDKGHMPDVVAHT-----------------------------------AV 128
            EA  +F  + + G +PD+  +T                                    +
Sbjct: 266 DEAEMVFRTMNEGGVVPDITTYTYLVDTFGKLNRLDKVSELLKEMASTGNVPEISSYNVL 325

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           +EAYA  G  ++A  VF  M  +G  PNA TY++L+ GL     G      + ++  +EM
Sbjct: 326 LEAYARIGNIEDATGVFRLMQEAGCVPNAETYSILL-GLY----GKHGRYDEVRELFLEM 380

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
                 P+A TY  + + F       E   L   M  +   P+ +   E LI   G+G
Sbjct: 381 KVSNTEPDAATYNTLIDVFGEGGYFKEVVTLFHDMAEENVEPNMETY-EGLIFACGKG 437



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 4/139 (2%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M   L ++GL  +   +F ++   G    V ++TA+I +Y   G+ + +L +  RM    
Sbjct: 149 MISLLGREGLLEKCSDIFEEMGAHGVSRSVFSYTALINSYGRNGKYEVSLELLERMKKER 208

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V+P+  TY  +I   A        +LG       EM  +G++P+  TY  +  A      
Sbjct: 209 VSPSILTYNTVINSCARGGLDWEGLLG----LFAEMRHEGIQPDIVTYNTLLCACSNRGL 264

Query: 213 VDEARGLLQQMKAKGFVPD 231
            DEA  + + M   G VPD
Sbjct: 265 GDEAEMVFRTMNEGGVVPD 283



 Score = 40.0 bits (92), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 59/132 (44%), Gaps = 6/132 (4%)

Query: 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
           GL  E+++ F +IK  G +P+V+ +  ++  YA + +  EA  +   ML +  +      
Sbjct: 578 GLVDESVEQFQEIKASGILPNVMCYCMMLAVYAKSDRWNEAYELLDEMLTNRASNIHQVI 637

Query: 161 AVLIKGLAAAADGNAKILGDA-QKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGL 219
             +IKG     D N +++     K   E  G GMR     Y  + EA     + + A  +
Sbjct: 638 GQMIKG-DFDDDSNWQMVEYVFDKLNSEGCGLGMR----FYNTLLEALWWLGQKERAVRV 692

Query: 220 LQQMKAKGFVPD 231
           L +   +G  P+
Sbjct: 693 LGEATKRGHFPE 704



 Score = 39.3 bits (90), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 5/97 (5%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +   + G   EA++ + +++    +PD     AV+  Y  AG   E++  F  + ASG
Sbjct: 535 VIEGFRQGGQFEEAIKAYVEMEKSRLVPDERTLEAVLSVYCIAGLVDESVEQFQEIKASG 594

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
           + PN   Y +++   A +   N     +A + L EM+
Sbjct: 595 ILPNVMCYCMMLAVYAKSDRWN-----EAYELLDEML 626


>gi|357159149|ref|XP_003578355.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18900-like [Brachypodium distachyon]
          Length = 857

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 79/161 (49%), Gaps = 5/161 (3%)

Query: 72  RNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           RNL    ++ R +       ++  A  +     EA+++F ++++ G+ PD V +  +I+ 
Sbjct: 384 RNLLHEMNRDRCKPTVVTYNRIIHAYGRANYLREAVKVFEEMEEAGYEPDRVTYCTLIDI 443

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +A AG  + A+ ++ RM   G++P+ +TY+ ++  L     G    L  A K   EM+  
Sbjct: 444 HAKAGYLEVAMDLYGRMQEVGLSPDTFTYSAMVNCL-----GKGGQLAAAYKLFCEMIEN 498

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
           G  PN  TY  +     +A+  D    L + M+  GF PD+
Sbjct: 499 GCTPNLVTYNIIIALQAKARNYDNVVKLYRDMQVAGFRPDK 539



 Score = 60.5 bits (145), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/187 (21%), Positives = 81/187 (43%), Gaps = 32/187 (17%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +++ +M+  GL+ +      M + L K G    A +LF ++ + G  P++V +  +I   
Sbjct: 455 DLYGRMQEVGLSPDTFTYSAMVNCLGKGGQLAAAYKLFCEMIENGCTPNLVTYNIIIALQ 514

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK--------------------------- 165
           A A      ++++  M  +G  P+  TY+++++                           
Sbjct: 515 AKARNYDNVVKLYRDMQVAGFRPDKITYSIVMEVLGHCGHLDEAEAVFIEMRRDWAPDEP 574

Query: 166 --GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
             GL     G A  +  A  +   M+  G++PN  T  ++  AF++  +  +A  +LQ M
Sbjct: 575 VYGLLVDLWGKAGNVDKALGWYHAMLQDGLQPNVPTCNSLLSAFLKINRFQDAYSVLQNM 634

Query: 224 KAKGFVP 230
            A+G VP
Sbjct: 635 LAQGLVP 641



 Score = 41.2 bits (95), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 7/107 (6%)

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           G   + +TY  +I  L     G A+  G  +  L EM     +P   TY  +  A+ RA 
Sbjct: 359 GFKHDGHTYTTMIGIL-----GQARQFGIMRNLLHEMNRDRCKPTVVTYNRIIHAYGRAN 413

Query: 212 KVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ-GFRGVINILFGK 257
            + EA  + ++M+  G+ PD +     LID   + G+  V   L+G+
Sbjct: 414 YLREAVKVFEEMEEAGYEPD-RVTYCTLIDIHAKAGYLEVAMDLYGR 459



 Score = 39.7 bits (91), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 7/118 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK--MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           + +F +MR +   +  V   + D   K G   +AL  +  +   G  P+V    +++ A+
Sbjct: 559 EAVFIEMRRDWAPDEPVYGLLVDLWGKAGNVDKALGWYHAMLQDGLQPNVPTCNSLLSAF 618

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
               + ++A  V   MLA G+ P+  TY +L   L+   D +A++    Q  LM + G
Sbjct: 619 LKINRFQDAYSVLQNMLAQGLVPSLQTYTLL---LSCCTDAHAQMGLCCQ--LMAITG 671


>gi|225423589|ref|XP_002275605.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Vitis vinifera]
          Length = 644

 Score = 76.6 bits (187), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 76/153 (49%), Gaps = 8/153 (5%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           ++ KM  +G   N V    + D L ++G   EA ++  ++ +KG  P+   ++++I+ + 
Sbjct: 369 LWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFF 428

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G  ++A+RV+  M  +   PN   Y+VLI GL    DG    L +A      M+G+G+
Sbjct: 429 KTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCE--DGK---LREAMMMWTHMLGRGL 483

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK 226
           RP+   Y+++      A  V+    L  +M  +
Sbjct: 484 RPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQ 516



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 73/140 (52%), Gaps = 5/140 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K G + + + L + ++++GH  +  A++ +I       + +EA+ ++ +M+  G
Sbjct: 318 LINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKG 377

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN   Y+ LI GL          L +A++ L EMV KG  PNA TY+++ + F +   
Sbjct: 378 CQPNIVVYSALIDGLCREGK-----LDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGN 432

Query: 213 VDEARGLLQQMKAKGFVPDE 232
             +A  + ++M     VP+E
Sbjct: 433 SQKAIRVWKEMAKNNCVPNE 452



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L K+  + EA+ L+ ++ +KG  P++V ++A+I+     G+  EA  +   M+  G
Sbjct: 353 LISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKG 412

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PNA+TY+ LIKG      GN++    A +   EM      PN   Y+ +        K
Sbjct: 413 CTPNAFTYSSLIKGFFKT--GNSQ---KAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGK 467

Query: 213 VDEARGLLQQMKAKGFVPD 231
           + EA  +   M  +G  PD
Sbjct: 468 LREAMMMWTHMLGRGLRPD 486



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 81/188 (43%), Gaps = 33/188 (17%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +M+ EG   ++V    + + L K G      +L   +  KG +P+ V +  +I    
Sbjct: 229 LLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLC 288

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA---AADG----------------- 173
             G+  +A+ +  RM+AS   PN  TY  LI GL     + DG                 
Sbjct: 289 LKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEY 348

Query: 174 --NAKILG--------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
             +  I G        +A     +MV KG +PN   Y+A+ +   R  K+DEA+ +L +M
Sbjct: 349 AYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEM 408

Query: 224 KAKGFVPD 231
             KG  P+
Sbjct: 409 VNKGCTPN 416



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 86/224 (38%), Gaps = 12/224 (5%)

Query: 17  KRSLRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKKVVDEEP---TDPRN 73
           +R++R  N+ +N  +Q  L   + +  +  V  K+ + P    F  V+          R 
Sbjct: 132 RRTVRSFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNVLSFNLVIKAMCKLGLVDRA 191

Query: 74  LQEIFHKM---RTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           + E+F +M   + E        + D L K+    EA+ L  +++ +G  P  V    +I 
Sbjct: 192 I-EVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLIN 250

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
                G      ++   M   G  PN  TY  +I GL          L  A   L  MV 
Sbjct: 251 GLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGK-----LDKAVSLLDRMVA 305

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
               PN  TY  +    V+  +  +   LL  ++ +G   +E A
Sbjct: 306 SKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYA 349



 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 7/117 (5%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA-- 150
           +   L +DG   EA+ ++  +  +G  PDVVA++++I    +AG  +  L++F  ML   
Sbjct: 458 LIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQE 517

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAF 207
           S   P+  TY +L++ L          +  A   L  M+ +G  P+  T      A 
Sbjct: 518 SDSQPDVVTYNILLRALCKQNS-----ISHAIDLLNSMLDRGCNPDLITCNIFLNAL 569


>gi|356519580|ref|XP_003528450.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial-like [Glycine max]
          Length = 1012

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 46/158 (29%), Positives = 79/158 (50%), Gaps = 8/158 (5%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +I  K+   GL  N +    +   L + G+T +A  +  ++  KG   D+V + A+I  Y
Sbjct: 676 QIHKKLVDMGLNLNQMVYNTLITVLCRLGMTKKANVVLTEMVIKGISADIVTYNALIRGY 735

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
            +    ++A   + +ML SG++PN  TY  L++GL+        ++ DA K + EM  +G
Sbjct: 736 CTGSHVEKAFNTYSQMLVSGISPNITTYNALLEGLSTNG-----LMRDADKLVSEMRERG 790

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
           + PNA TY  +     R     ++  L  +M  KGF+P
Sbjct: 791 LVPNATTYNILVSGHGRVGNKRDSIKLYCEMITKGFIP 828



 Score = 73.9 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 41/173 (23%), Positives = 86/173 (49%), Gaps = 20/173 (11%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           + +M   G++ N      + + LS +GL  +A +L ++++++G +P+   +  ++  +  
Sbjct: 748 YSQMLVSGISPNITTYNALLEGLSTNGLMRDADKLVSEMRERGLVPNATTYNILVSGHGR 807

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            G  +++++++  M+  G  P   TY VLI+  A A       +  A++ L EM+ +G  
Sbjct: 808 VGNKRDSIKLYCEMITKGFIPTTGTYNVLIQDYAKAGK-----MRQARELLNEMLTRGRI 862

Query: 195 PNAGTYTAV------------FEAFVRAQKVDEARGLLQQMKAKGFVPDEKAV 235
           PN+ TY  +             +  ++    +EA+ LL++M  KG VP E  +
Sbjct: 863 PNSSTYDVLICGWCKLSCQPEMDRLLKLSYQNEAKKLLREMCEKGHVPSESTL 915



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/160 (28%), Positives = 77/160 (48%), Gaps = 10/160 (6%)

Query: 72  RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R+  ++  +MR  GL  NA     +     + G   ++++L+ ++  KG +P    +  +
Sbjct: 777 RDADKLVSEMRERGLVPNATTYNILVSGHGRVGNKRDSIKLYCEMITKGFIPTTGTYNVL 836

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA-----DGNAKI--LGDA 181
           I+ YA AG+ ++A  +   ML  G  PN+ TY VLI G    +     D   K+    +A
Sbjct: 837 IQDYAKAGKMRQARELLNEMLTRGRIPNSSTYDVLICGWCKLSCQPEMDRLLKLSYQNEA 896

Query: 182 QKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221
           +K L EM  KG  P+  T   +   F    K D+A+ LL+
Sbjct: 897 KKLLREMCEKGHVPSESTLMYISSNFSAPGKRDDAKRLLK 936



 Score = 63.5 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 5/136 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M D L K G + EA ++F  I     +P+ V +TA+++ +   G  + A  V  +M    
Sbjct: 347 MMDGLFKAGKSKEAEEMFQTILKLNLVPNCVTYTALLDGHCKVGDVEFAETVLQKMEKEH 406

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           V PN  T++ +I G A        +L  A + L +MV   + PN   Y  + + + R  +
Sbjct: 407 VLPNVVTFSSIINGYAKKG-----MLNKAVEVLRKMVQMNIMPNVFVYAILLDGYFRTGQ 461

Query: 213 VDEARGLLQQMKAKGF 228
            + A G  ++MK+ G 
Sbjct: 462 HEAAAGFYKEMKSWGL 477



 Score = 57.8 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 43/161 (26%), Positives = 78/161 (48%), Gaps = 14/161 (8%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +M   GL  N V    +  AL K G   EA    +Q+  +G   D+V  T +++   
Sbjct: 293 LLREMYNMGLDPNHVSYTTIISALLKSGRVMEAFNHQSQMVVRGISIDLVLCTTMMDGLF 352

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGD---AQKYLMEMVG 190
            AG+ KEA  +F  +L   + PN  TY  L+       DG+ K+ GD   A+  L +M  
Sbjct: 353 KAGKSKEAEEMFQTILKLNLVPNCVTYTALL-------DGHCKV-GDVEFAETVLQKMEK 404

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           + + PN  T++++   + +   +++A  +L++M     +P+
Sbjct: 405 EHVLPNVVTFSSIINGYAKKGMLNKAVEVLRKMVQMNIMPN 445



 Score = 54.3 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/129 (28%), Positives = 60/129 (46%), Gaps = 13/129 (10%)

Query: 94  FDALSKDGLTHEALQL--------FAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVF 145
           FD ++ + LT   L+L        F+++ + G  PD V + +V+  Y   G+ + AL + 
Sbjct: 549 FDVVAYNALTKGLLRLGKYEPKSVFSRMIELGLTPDCVTYNSVMNTYFIQGKTENALDLL 608

Query: 146 MRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFE 205
             M + GV PN  TY +LI GL         I       L EM+  G  P    +  + +
Sbjct: 609 NEMKSYGVMPNMVTYNILIGGLCKTGAIEKVI-----SVLHEMLAVGYVPTPIIHKFLLK 663

Query: 206 AFVRAQKVD 214
           A+ R++K D
Sbjct: 664 AYSRSRKAD 672



 Score = 53.5 bits (127), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 45/190 (23%), Positives = 74/190 (38%), Gaps = 33/190 (17%)

Query: 75  QEIFHKMRTEGLTNNAVKMFDALSK---DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +F +M   GLT + V     ++     G T  AL L  ++K  G MP++V +  +I  
Sbjct: 570 KSVFSRMIELGLTPDCVTYNSVMNTYFIQGKTENALDLLNEMKSYGVMPNMVTYNILIGG 629

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKI-------------- 177
               G  ++ + V   MLA G  P    +  L+K  + +   +A +              
Sbjct: 630 LCKTGAIEKVISVLHEMLAVGYVPTPIIHKFLLKAYSRSRKADAILQIHKKLVDMGLNLN 689

Query: 178 -------------LGDAQK---YLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221
                        LG  +K    L EMV KG+  +  TY A+   +     V++A     
Sbjct: 690 QMVYNTLITVLCRLGMTKKANVVLTEMVIKGISADIVTYNALIRGYCTGSHVEKAFNTYS 749

Query: 222 QMKAKGFVPD 231
           QM   G  P+
Sbjct: 750 QMLVSGISPN 759



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 6/142 (4%)

Query: 89  NAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRM 148
           N   + D   K+G    AL +  ++ +K    DVVA+ A+ +     G+  E   VF RM
Sbjct: 518 NYSSLMDGYFKEGNESAALSVVQEMTEKDMQFDVVAYNALTKGLLRLGK-YEPKSVFSRM 576

Query: 149 LASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFV 208
           +  G+ P+  TY  ++               +A   L EM   G+ PN  TY  +     
Sbjct: 577 IELGLTPDCVTYNSVMNTYFIQGKTE-----NALDLLNEMKSYGVMPNMVTYNILIGGLC 631

Query: 209 RAQKVDEARGLLQQMKAKGFVP 230
           +   +++   +L +M A G+VP
Sbjct: 632 KTGAIEKVISVLHEMLAVGYVP 653



 Score = 51.2 bits (121), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 5/112 (4%)

Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
           P VV  T +I AY       +   ++ +M+ SGV P+  T + ++ GL          L 
Sbjct: 234 PTVVTWTTLIAAYCKHRGIDDFFSLYEQMIMSGVMPDVVTCSSILYGLCRHGK-----LT 288

Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +A   L EM   G+ PN  +YT +  A +++ +V EA     QM  +G   D
Sbjct: 289 EAAMLLREMYNMGLDPNHVSYTTIISALLKSGRVMEAFNHQSQMVVRGISID 340



 Score = 50.8 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 36/158 (22%), Positives = 67/158 (42%), Gaps = 8/158 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           + H+M   G     +    +  A S+       LQ+  ++ D G   + + +  +I    
Sbjct: 642 VLHEMLAVGYVPTPIIHKFLLKAYSRSRKADAILQIHKKLVDMGLNLNQMVYNTLITVLC 701

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G  K+A  V   M+  G++ +  TY  LI+G    +      +  A     +M+  G+
Sbjct: 702 RLGMTKKANVVLTEMVIKGISADIVTYNALIRGYCTGSH-----VEKAFNTYSQMLVSGI 756

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            PN  TY A+ E       + +A  L+ +M+ +G VP+
Sbjct: 757 SPNITTYNALLEGLSTNGLMRDADKLVSEMRERGLVPN 794



 Score = 50.1 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 73/155 (47%), Gaps = 8/155 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +  KM  E +  N V    + +  +K G+ ++A+++  ++     MP+V  +  +++ 
Sbjct: 396 ETVLQKMEKEHVLPNVVTFSSIINGYAKKGMLNKAVEVLRKMVQMNIMPNVFVYAILLDG 455

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y   GQ + A   +  M + G+  N   + +L+  L  +       + +AQ  + +++ K
Sbjct: 456 YFRTGQHEAAAGFYKEMKSWGLEENNIIFDILLNNLKRSGG-----MKEAQSLIKDILSK 510

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK 226
           G+  +   Y+++ + + +      A  ++Q+M  K
Sbjct: 511 GIYLDVFNYSSLMDGYFKEGNESAALSVVQEMTEK 545



 Score = 45.1 bits (105), Expect = 0.030,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 5/125 (4%)

Query: 107 LQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKG 166
             L+ Q+   G MPDVV  ++++      G+  EA  +   M   G+ PN  +Y  +I  
Sbjct: 256 FSLYEQMIMSGVMPDVVTCSSILYGLCRHGKLTEAAMLLREMYNMGLDPNHVSYTTIISA 315

Query: 167 LAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK 226
           L  +     +++ +A  +  +MV +G+  +    T + +   +A K  EA  + Q +   
Sbjct: 316 LLKS----GRVM-EAFNHQSQMVVRGISIDLVLCTTMMDGLFKAGKSKEAEEMFQTILKL 370

Query: 227 GFVPD 231
             VP+
Sbjct: 371 NLVPN 375



 Score = 40.4 bits (93), Expect = 0.79,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 57/152 (37%), Gaps = 26/152 (17%)

Query: 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
           GL   A  +   +   G   D +    +++ Y   G    AL +      +GV P+  TY
Sbjct: 124 GLVQYAEWIMGNLVGGGVPLDAIGLNTLVDGYCEVGLVSRALDLVEDGWKNGVKPDIVTY 183

Query: 161 AVLIKGLAAAADGNAKILGDAQKYLMEMVG---------------------KGMRPNAGT 199
             L+       D     L  A+  + E++G                     + ++P   T
Sbjct: 184 NTLVNAFCKRGD-----LAKAESVVNEILGFRRDDESGVLNDCGVETWDGLRDLQPTVVT 238

Query: 200 YTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           +T +  A+ + + +D+   L +QM   G +PD
Sbjct: 239 WTTLIAAYCKHRGIDDFFSLYEQMIMSGVMPD 270


>gi|302775252|ref|XP_002971043.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
 gi|300161025|gb|EFJ27641.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
          Length = 457

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 79/165 (47%), Gaps = 14/165 (8%)

Query: 76  EIFHKM-RTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           E+  +M  ++G   N V    + D L K G T EA  +   +   G  PDVV +++++  
Sbjct: 278 EMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNG 337

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              AG+ +EA+     M   G  PNA TY  L+ GL +        L +A++ + EM   
Sbjct: 338 LCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGR-----LAEAERMVEEMSSG 392

Query: 192 GMR-----PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G       P+  TY A+     +A ++D+A    Q+M+++G  PD
Sbjct: 393 GGGGDHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPD 437



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 86/197 (43%), Gaps = 37/197 (18%)

Query: 72  RNLQ---EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAH 125
           +NL+    +   M   G+  + V    + D L K G   EA QL  ++K  G  PDVVA+
Sbjct: 166 KNLEMADSLLQTMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAY 225

Query: 126 TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA---------------AA 170
           ++ +     +G+   A +V  +M  S   PN  TY  ++ GL                A+
Sbjct: 226 SSFVYGLCKSGKVLNAHQVLEQMRDSDHDPNVVTYNTILDGLCKSGKIDTALEMMEQMAS 285

Query: 171 ADGNA-KILG---------------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
           +DG    ++G               +A+  +  M   G RP+  TY+++     +A K++
Sbjct: 286 SDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIE 345

Query: 215 EARGLLQQMKAKGFVPD 231
           EA   +++M  +G  P+
Sbjct: 346 EAVEAVREMAMEGCKPN 362



 Score = 63.5 bits (153), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 49/219 (22%), Positives = 90/219 (41%), Gaps = 37/219 (16%)

Query: 50  KSKLPPPYDPFKKVVD--EEPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTH 104
           ++  PP    F  +V+   +   P + + +   M   G+  N V    + + L K    H
Sbjct: 3   RTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLERWH 62

Query: 105 EALQLFAQIKDKG--HMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAV 162
           EA +L   +  +G    PD+V ++ ++  Y  AG+ +E+  +   +++ G+ P+A  Y  
Sbjct: 63  EAEELVRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTK 122

Query: 163 LIKGLAAAADG----------------------NAKILGD--------AQKYLMEMVGKG 192
           ++  L  +A                        N  I G         A   L  M   G
Sbjct: 123 VMASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAASG 182

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           ++ +  TY  + +   +A ++ EA  LL++MKA G  PD
Sbjct: 183 VKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPD 221



 Score = 43.5 bits (101), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 8/101 (7%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKG----HMP-DVVAHTA 127
           E   +M  EG   NAV    +   L   G   EA ++  ++   G    H P  V  + A
Sbjct: 349 EAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGDHCPPSVSTYNA 408

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
           +I     AG+  +AL+ F RM + G  P+  +Y+ +++GLA
Sbjct: 409 LIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLA 449



 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 71/160 (44%), Gaps = 8/160 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+  ++ + GL  +A+   K+  +L K     EAL+L  ++   G  P ++    +I  
Sbjct: 102 RELLKEVISRGLRPDALMYTKVMASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISG 161

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
                  + A  +   M ASGV  +  TY  L+ GL  A       L +A++ L  M   
Sbjct: 162 CCREKNLEMADSLLQTMAASGVKADVVTYNTLMDGLCKAGR-----LQEAEQLLERMKAS 216

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G  P+   Y++      ++ KV  A  +L+QM+     P+
Sbjct: 217 GCAPDVVAYSSFVYGLCKSGKVLNAHQVLEQMRDSDHDPN 256


>gi|242045792|ref|XP_002460767.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
 gi|241924144|gb|EER97288.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
          Length = 762

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 75/157 (47%), Gaps = 8/157 (5%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F +M+ +GL  + V    + + L + G   EA ++  ++  +    D V +T +++ Y  
Sbjct: 387 FDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCK 446

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            G+  EA +V   M+  GVAPN  TY  L  GL    D  A     A + L EM  KG+ 
Sbjct: 447 RGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQA-----ANELLHEMSNKGLE 501

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            NA TY ++     +A  +D+A   +  M A G  PD
Sbjct: 502 LNACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPD 538



 Score = 72.8 bits (177), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 79/166 (47%), Gaps = 8/166 (4%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D +   E+ H+M  +GL  NA     + + L K G   +A++  A +   G  PDV  +T
Sbjct: 484 DVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYT 543

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
            +I+A   +G+   A  +   ML +G+ P   TY VL+ G   +     ++ G  +K L 
Sbjct: 544 TLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMS----GRVEG-GKKLLE 598

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
            M+ K + PNA TY ++ + +     +     + + M ++   P+E
Sbjct: 599 WMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKGMCSRNVEPNE 644



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 73/159 (45%), Gaps = 8/159 (5%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++ + M   G+  N V    + D L K G    A +L  ++ +KG   +   + ++I   
Sbjct: 455 QVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGL 514

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             AG   +A+R    M A+G+ P+ YTY  LI  L  + +     L  A   L EM+  G
Sbjct: 515 CKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGE-----LDRAHDLLQEMLDNG 569

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           ++P   TY  +   F  + +V+  + LL+ M  K   P+
Sbjct: 570 IKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPN 608



 Score = 63.5 bits (153), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 7/126 (5%)

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
           +L   + +K   P+   + ++++ Y      K    ++  M +  V PN  TY +LIKG 
Sbjct: 595 KLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKGMCSRNVEPNENTYNILIKGH 654

Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
                  A+ + +AQ +  EM+ KG R  A +Y+A+     + +K  EAR L   M+ +G
Sbjct: 655 C-----KARSMKEAQYFHNEMIEKGFRLTASSYSALIRLLNKKKKFVEARKLFHDMRKEG 709

Query: 228 FV--PD 231
           F   PD
Sbjct: 710 FTAEPD 715



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 5/123 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A + F +++ KG   D V +T +I     AG+ KEA +V   MLA  +  +  TY VL+ 
Sbjct: 383 ARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVD 442

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G           + +A +    MV +G+ PN  TYTA+ +   +   V  A  LL +M  
Sbjct: 443 GYCKRGK-----MAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSN 497

Query: 226 KGF 228
           KG 
Sbjct: 498 KGL 500



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 81/192 (42%), Gaps = 26/192 (13%)

Query: 61  KKVVDE--EPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEAL---QLFAQIKD 115
           +++ DE   P D      + H     G   NAVK+ D +   G+   A     + A + D
Sbjct: 282 RQLFDEMASPPDVVTYGILIHGYCALGELENAVKLLDDMVARGVEPNATVYTSVVALLCD 341

Query: 116 KGHMPDVVA----------------HTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYT 159
           KG + D +                 +T V+  + + G    A R F  M   G+A +  T
Sbjct: 342 KGRVSDALTVVEDMVHHKVILDEAVYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVT 401

Query: 160 YAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGL 219
           Y  LI GL  A +     L +A+K L EM+ + +  +  TYT + + + +  K+ EA  +
Sbjct: 402 YTTLINGLCRAGE-----LKEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQV 456

Query: 220 LQQMKAKGFVPD 231
              M  +G  P+
Sbjct: 457 HNTMVQRGVAPN 468



 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 86/199 (43%), Gaps = 41/199 (20%)

Query: 84  EGLTNNAVKMFDALSK----DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGK 139
           +GL +  V  ++ L K     G   +A QLF ++      PDVV +  +I  Y + G+ +
Sbjct: 255 QGLPDKNVCSYNILLKVLCGAGRVEDARQLFDEMASP---PDVVTYGILIHGYCALGELE 311

Query: 140 EALRVFMRMLASGVAPNAYTYAVLI-----KG-----LAAAAD----------------- 172
            A+++   M+A GV PNA  Y  ++     KG     L    D                 
Sbjct: 312 NAVKLLDDMVARGVEPNATVYTSVVALLCDKGRVSDALTVVEDMVHHKVILDEAVYTTVL 371

Query: 173 ---GNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFV 229
               N   L  A+++  EM  KG+  +  TYT +     RA ++ EA  +LQ+M A+   
Sbjct: 372 SGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLD 431

Query: 230 PDEKAVKEALID---KRGQ 245
            DE      L+D   KRG+
Sbjct: 432 VDE-VTYTVLVDGYCKRGK 449


>gi|15236546|ref|NP_194913.1| proton gradient regulation 3 [Arabidopsis thaliana]
 gi|75213543|sp|Q9SZ52.1|PP344_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g31850, chloroplastic; AltName: Full=Protein PROTON
           GRADIENT REGULATION 3; Flags: Precursor
 gi|4584524|emb|CAB40755.1| putative protein [Arabidopsis thaliana]
 gi|7270088|emb|CAB79903.1| putative protein [Arabidopsis thaliana]
 gi|332660567|gb|AEE85967.1| proton gradient regulation 3 [Arabidopsis thaliana]
          Length = 1112

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 51/163 (31%), Positives = 81/163 (49%), Gaps = 8/163 (4%)

Query: 72  RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
           R  ++IF+ ++  GL  ++V    M    SK G   EA++L +++ + G  PDV+   ++
Sbjct: 485 REAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSL 544

Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
           I     A +  EA ++FMRM    + P   TY  L+ GL      N KI  +A +    M
Sbjct: 545 INTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGK----NGKI-QEAIELFEGM 599

Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           V KG  PN  T+  +F+   +  +V  A  +L +M   G VPD
Sbjct: 600 VQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPD 642



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 6/140 (4%)

Query: 93   MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
            + D LSK G  +EA QLF  + D G  P+   +  +I  +  AG+   A  +F RM+  G
Sbjct: 897  LIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEG 956

Query: 153  VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
            V P+  TY+VL+  L          + +   Y  E+   G+ P+   Y  +     ++ +
Sbjct: 957  VRPDLKTYSVLVDCLCMVGR-----VDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHR 1011

Query: 213  VDEARGLLQQMK-AKGFVPD 231
            ++EA  L  +MK ++G  PD
Sbjct: 1012 LEEALVLFNEMKTSRGITPD 1031



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/158 (27%), Positives = 79/158 (50%), Gaps = 8/158 (5%)

Query: 76  EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           E+F  M + G+   A   +   D   K G +  AL+ F ++K KG  P++VA  A + + 
Sbjct: 419 ELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSL 478

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
           A AG+ +EA ++F  +   G+ P++ TY +++K  +   +     + +A K L EM+  G
Sbjct: 479 AKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGE-----IDEAIKLLSEMMENG 533

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
             P+     ++     +A +VDEA  +  +MK     P
Sbjct: 534 CEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKP 571



 Score = 71.2 bits (173), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 76/159 (47%), Gaps = 9/159 (5%)

Query: 77   IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
            +F +M  EG+  +      + D L   G   E L  F ++K+ G  PDVV +  +I    
Sbjct: 948  LFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLG 1007

Query: 134  SAGQGKEALRVFMRMLAS-GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             + + +EAL +F  M  S G+ P+ YTY  LI  L     G A ++ +A K   E+   G
Sbjct: 1008 KSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNL-----GIAGMVEEAGKIYNEIQRAG 1062

Query: 193  MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            + PN  T+ A+   +  + K + A  + Q M   GF P+
Sbjct: 1063 LEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPN 1101



 Score = 70.9 bits (172), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 48/168 (28%), Positives = 76/168 (45%), Gaps = 8/168 (4%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+F KM+T     + V    + D  S +       Q +++++  GH+PDVV  T +++A
Sbjct: 313 KEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDA 372

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              AG   EA      M   G+ PN +TY  LI GL          L DA +    M   
Sbjct: 373 LCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLL-----RVHRLDDALELFGNMESL 427

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
           G++P A TY    + + ++     A    ++MK KG  P+  A   +L
Sbjct: 428 GVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASL 475



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/162 (27%), Positives = 74/162 (45%), Gaps = 9/162 (5%)

Query: 74  LQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQI-KDKGHMPDVVAHTAVI 129
           L E++ +M T     N +    +   L K G   +AL L+  +  D+   P    +  +I
Sbjct: 839 LFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLI 898

Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
           +  + +G+  EA ++F  ML  G  PN   Y +LI G   A + +A     A      MV
Sbjct: 899 DGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADA-----ACALFKRMV 953

Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            +G+RP+  TY+ + +      +VDE     +++K  G  PD
Sbjct: 954 KEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPD 995



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/163 (25%), Positives = 75/163 (46%), Gaps = 9/163 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           Q++F ++++ G   +      + DA  K G   E  +L+ ++       + + H  VI  
Sbjct: 805 QDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISG 864

Query: 132 YASAGQGKEALRVFMRMLAS-GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
              AG   +AL ++  +++    +P A TY  LI GL+ +       L +A++    M+ 
Sbjct: 865 LVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGR-----LYEAKQLFEGMLD 919

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK 233
            G RPN   Y  +   F +A + D A  L ++M  +G  PD K
Sbjct: 920 YGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLK 962



 Score = 64.3 bits (155), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 41/145 (28%), Positives = 74/145 (51%), Gaps = 5/145 (3%)

Query: 87  TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFM 146
           TN  + +F +LS  G   +A     ++++ G + +  ++  +I     +    EA+ V+ 
Sbjct: 153 TNTYLTIFKSLSVKGGLKQAPYALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYR 212

Query: 147 RMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEA 206
           RM+  G  P+  TY+ L+ GL    D ++ ++G     L EM   G++PN  T+T     
Sbjct: 213 RMILEGFRPSLQTYSSLMVGLGKRRDIDS-VMG----LLKEMETLGLKPNVYTFTICIRV 267

Query: 207 FVRAQKVDEARGLLQQMKAKGFVPD 231
             RA K++EA  +L++M  +G  PD
Sbjct: 268 LGRAGKINEAYEILKRMDDEGCGPD 292



 Score = 62.4 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 8/165 (4%)

Query: 70  DPRNLQEIFHKMRTEGLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
           D  ++  +  +M T GL  N          L + G  +EA ++  ++ D+G  PDVV +T
Sbjct: 238 DIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYT 297

Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
            +I+A  +A +   A  VF +M      P+  TY  L+   +   D     L   +++  
Sbjct: 298 VLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRD-----LDSVKQFWS 352

Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           EM   G  P+  T+T + +A  +A    EA   L  M+ +G +P+
Sbjct: 353 EMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPN 397



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 5/127 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           +AL+LF  ++  G  P    +   I+ Y  +G    AL  F +M   G+APN       +
Sbjct: 416 DALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASL 475

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
             LA A         +A++    +   G+ P++ TY  + + + +  ++DEA  LL +M 
Sbjct: 476 YSLAKAGRDR-----EAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMM 530

Query: 225 AKGFVPD 231
             G  PD
Sbjct: 531 ENGCEPD 537



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 9/127 (7%)

Query: 78   FHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIK-DKGHMPDVVAHTAVIEAYA 133
            F +++  GL  + V    + + L K     EAL LF ++K  +G  PD+  + ++I    
Sbjct: 984  FKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLG 1043

Query: 134  SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             AG  +EA +++  +  +G+ PN +T+  LI+G + +          A      MV  G 
Sbjct: 1044 IAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPE-----HAYAVYQTMVTGGF 1098

Query: 194  RPNAGTY 200
             PN GTY
Sbjct: 1099 SPNTGTY 1105



 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M +AL  DG   E   +F  ++ +    D   +  + ++ +  G  K+A     +M   G
Sbjct: 124 MLEALRVDGKLEEMAYVFDLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKMREFG 183

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
              NAY+Y  LI  L       ++   +A +    M+ +G RP+  TY+++     + + 
Sbjct: 184 FVLNAYSYNGLIHLLL-----KSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRD 238

Query: 213 VDEARGLLQQMKAKGFVPD 231
           +D   GLL++M+  G  P+
Sbjct: 239 IDSVMGLLKEMETLGLKPN 257



 Score = 47.0 bits (110), Expect = 0.007,   Method: Composition-based stats.
 Identities = 34/144 (23%), Positives = 66/144 (45%), Gaps = 9/144 (6%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++F +M+   L    V    +   L K+G   EA++LF  +  KG  P+ +    + +  
Sbjct: 559 KMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCL 618

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
               +   AL++  +M+  G  P+ +TY  +I GL    +G  K   +A  +  +M  K 
Sbjct: 619 CKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGL--VKNGQVK---EAMCFFHQM-KKL 672

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEA 216
           + P+  T   +    V+A  +++A
Sbjct: 673 VYPDFVTLCTLLPGVVKASLIEDA 696



 Score = 44.3 bits (103), Expect = 0.055,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 4/91 (4%)

Query: 77   IFHKMRT-EGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
            +F++M+T  G+T +      +   L   G+  EA +++ +I+  G  P+V    A+I  Y
Sbjct: 1018 LFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGY 1077

Query: 133  ASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
            + +G+ + A  V+  M+  G +PN  TY  L
Sbjct: 1078 SLSGKPEHAYAVYQTMVTGGFSPNTGTYEQL 1108



 Score = 38.1 bits (87), Expect = 3.4,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 5/72 (6%)

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           GV P   TY +LI GL       A ++  AQ   +++   G  P+  TY  + +A+ ++ 
Sbjct: 780 GVQPKLPTYNLLIGGLL-----EADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSG 834

Query: 212 KVDEARGLLQQM 223
           K+DE   L ++M
Sbjct: 835 KIDELFELYKEM 846


>gi|255660938|gb|ACU25638.1| pentatricopeptide repeat-containing protein [Citharexylum
           montevidense]
          Length = 481

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 78/166 (46%), Gaps = 8/166 (4%)

Query: 78  FHKMRTEGL--TNNAVK-MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F+KM +EG+  T +    M       G    A + F  +K +   PDV+ +  +I  Y  
Sbjct: 138 FNKMLSEGIEPTRHTFNIMIWGFFLSGKVETAXRFFEDMKSRDITPDVITYNTMINGYYR 197

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
             + +EA + F+ M    + P   T+  LIKG  A        + DA + + EM G G++
Sbjct: 198 VKKMEEAEKYFVEMKGRNIEPTVVTHTTLIKGYVAVDR-----VDDALRLVEEMKGFGIK 252

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
           PNA TY+        A+K+ EAR  L++M  K   P + ++   LI
Sbjct: 253 PNAITYSTXLPGLCNAEKMSEARSXLKEMVDKYIAPTDNSIFLRLI 298



 Score = 67.8 bits (164), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 78/160 (48%), Gaps = 10/160 (6%)

Query: 76  EIFHKMRTEGLTNNAVKMFDALSK----DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           ++FHKM   G+    +K +D L K     G    A + F ++  +G  P       +I  
Sbjct: 101 KLFHKMEELGV-ERTIKSYDVLFKVILRRGRYMMAKRYFNKMLSEGIEPTRHTFNIMIWG 159

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           +  +G+ + A R F  M +  + P+  TY  +I G         K + +A+KY +EM G+
Sbjct: 160 FFLSGKVETAXRFFEDMKSRDITPDVITYNTMINGYY-----RVKKMEEAEKYFVEMKGR 214

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            + P   T+T + + +V   +VD+A  L+++MK  G  P+
Sbjct: 215 NIEPTVVTHTTLIKGYVAVDRVDDALRLVEEMKGFGIKPN 254



 Score = 61.6 bits (148), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 80/169 (47%), Gaps = 10/169 (5%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
            F  M++  +T + +    M +   +     EA + F ++K +   P VV HT +I+ Y 
Sbjct: 172 FFEDMKSRDITPDVITYNTMINGYYRVKKMEEAEKYFVEMKGRNIEPTVVTHTTLIKGYV 231

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
           +  +  +ALR+   M   G+ PNA TY+  + GL      NA+ + +A+  L EMV K +
Sbjct: 232 AVDRVDDALRLVEEMKGFGIKPNAITYSTXLPGLC-----NAEKMSEARSXLKEMVDKYI 286

Query: 194 RP-NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
            P +   +  +     +A  +D A  +L+ M  +  VP E      LI+
Sbjct: 287 APTDNSIFLRLISGQCKAGNLDAAADVLKAM-IRLSVPTEAGHYGVLIE 334


>gi|297738031|emb|CBI27232.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 76/153 (49%), Gaps = 8/153 (5%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           ++ KM  +G   N V    + D L ++G   EA ++  ++ +KG  P+   ++++I+ + 
Sbjct: 385 LWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFF 444

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G  ++A+RV+  M  +   PN   Y+VLI GL    DG    L +A      M+G+G+
Sbjct: 445 KTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCE--DGK---LREAMMMWTHMLGRGL 499

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK 226
           RP+   Y+++      A  V+    L  +M  +
Sbjct: 500 RPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQ 532



 Score = 75.1 bits (183), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 73/140 (52%), Gaps = 5/140 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + + L K G + + + L + ++++GH  +  A++ +I       + +EA+ ++ +M+  G
Sbjct: 334 LINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKG 393

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PN   Y+ LI GL          L +A++ L EMV KG  PNA TY+++ + F +   
Sbjct: 394 CQPNIVVYSALIDGLCREGK-----LDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGN 448

Query: 213 VDEARGLLQQMKAKGFVPDE 232
             +A  + ++M     VP+E
Sbjct: 449 SQKAIRVWKEMAKNNCVPNE 468



 Score = 72.4 bits (176), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +   L K+  + EA+ L+ ++ +KG  P++V ++A+I+     G+  EA  +   M+  G
Sbjct: 369 LISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKG 428

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             PNA+TY+ LIKG      GN++    A +   EM      PN   Y+ +        K
Sbjct: 429 CTPNAFTYSSLIKGFFKT--GNSQ---KAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGK 483

Query: 213 VDEARGLLQQMKAKGFVPD 231
           + EA  +   M  +G  PD
Sbjct: 484 LREAMMMWTHMLGRGLRPD 502



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 81/188 (43%), Gaps = 33/188 (17%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +M+ EG   ++V    + + L K G      +L   +  KG +P+ V +  +I    
Sbjct: 245 LLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLC 304

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA---AADG----------------- 173
             G+  +A+ +  RM+AS   PN  TY  LI GL     + DG                 
Sbjct: 305 LKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEY 364

Query: 174 --NAKILG--------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
             +  I G        +A     +MV KG +PN   Y+A+ +   R  K+DEA+ +L +M
Sbjct: 365 AYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEM 424

Query: 224 KAKGFVPD 231
             KG  P+
Sbjct: 425 VNKGCTPN 432



 Score = 56.6 bits (135), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/224 (22%), Positives = 86/224 (38%), Gaps = 12/224 (5%)

Query: 17  KRSLRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKKVVDEEP---TDPRN 73
           +R++R  N+ +N  +Q  L   + +  +  V  K+ + P    F  V+          R 
Sbjct: 148 RRTVRSFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNVLSFNLVIKAMCKLGLVDRA 207

Query: 74  LQEIFHKM---RTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
           + E+F +M   + E        + D L K+    EA+ L  +++ +G  P  V    +I 
Sbjct: 208 I-EVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLIN 266

Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
                G      ++   M   G  PN  TY  +I GL          L  A   L  MV 
Sbjct: 267 GLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGK-----LDKAVSLLDRMVA 321

Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
               PN  TY  +    V+  +  +   LL  ++ +G   +E A
Sbjct: 322 SKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYA 365



 Score = 53.5 bits (127), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 7/117 (5%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA-- 150
           +   L +DG   EA+ ++  +  +G  PDVVA++++I    +AG  +  L++F  ML   
Sbjct: 474 LIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQE 533

Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAF 207
           S   P+  TY +L++ L          +  A   L  M+ +G  P+  T      A 
Sbjct: 534 SDSQPDVVTYNILLRALCKQNS-----ISHAIDLLNSMLDRGCNPDLITCNIFLNAL 585


>gi|15228788|ref|NP_191813.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122214682|sp|Q3EAF8.1|PP294_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g62540, mitochondrial; Flags: Precursor
 gi|332646841|gb|AEE80362.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 599

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 68/129 (52%), Gaps = 5/129 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA +++  + D G  PD+VAH  ++E    + +  +A+++F  M + G  PN  +Y ++I
Sbjct: 316 EAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMI 375

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           +     +     I     +Y  +MV  G++P+A  YT +   F   +K+D    LL++M+
Sbjct: 376 RDFCKQSSMETAI-----EYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQ 430

Query: 225 AKGFVPDEK 233
            KG  PD K
Sbjct: 431 EKGHPPDGK 439



 Score = 60.5 bits (145), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 66/138 (47%), Gaps = 11/138 (7%)

Query: 72  RNLQE---IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAH 125
           RNL E   I++ M   GL  + V    M + L +     +A++LF  +K KG  P+V ++
Sbjct: 312 RNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSY 371

Query: 126 TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185
           T +I  +      + A+  F  M+ SG+ P+A  Y  LI G      G  K L    + L
Sbjct: 372 TIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGF-----GTQKKLDTVYELL 426

Query: 186 MEMVGKGMRPNAGTYTAV 203
            EM  KG  P+  TY A+
Sbjct: 427 KEMQEKGHPPDGKTYNAL 444



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 63/120 (52%), Gaps = 5/120 (4%)

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
           +L  ++++KGH PD   + A+I+  A+    +   R++ +M+ + + P+ +T+ +++K  
Sbjct: 424 ELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSY 483

Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
             A +     +G A     EM+ KG+ P+  +YT +    +   K  EA   L++M  KG
Sbjct: 484 FVARNYE---MGRA--VWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKG 538



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 6/129 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A+ +F  +K       V     ++++   A  GKEA +V    L     PN  TY VL+ 
Sbjct: 248 AVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEA-QVLFDKLKERFTPNMMTYTVLLN 306

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G         + L +A +   +M+  G++P+   +  + E  +R+ K  +A  L   MK+
Sbjct: 307 GWC-----RVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKS 361

Query: 226 KGFVPDEKA 234
           KG  P+ ++
Sbjct: 362 KGPCPNVRS 370



 Score = 42.7 bits (99), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 37/180 (20%), Positives = 79/180 (43%), Gaps = 22/180 (12%)

Query: 49  TKSKLPPPYDPFKKVVDE-EPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEAL 107
           T+ KL   Y+  K++ ++  P D +    +   M  + +  +  ++++ + ++ +     
Sbjct: 415 TQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIE---- 470

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
                       P +     ++++Y  A   +    V+  M+  G+ P+  +Y VLI+GL
Sbjct: 471 ------------PSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGL 518

Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
            +  +G ++   +A +YL EM+ KGM+     Y      F R  + +    L Q+ K  G
Sbjct: 519 IS--EGKSR---EACRYLEEMLDKGMKTPLIDYNKFAADFHRGGQPEIFEELAQRAKFSG 573


>gi|302757245|ref|XP_002962046.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
 gi|300170705|gb|EFJ37306.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
          Length = 465

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 79/165 (47%), Gaps = 14/165 (8%)

Query: 76  EIFHKM-RTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           E+  +M  ++G   N V    + D L K G T EA  +   +   G  PDVV +++++  
Sbjct: 278 EMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNG 337

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
              AG+ +EA+     M   G  PNA TY  L+ GL +        L +A++ + EM   
Sbjct: 338 LCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGR-----LAEAERMVEEMSSG 392

Query: 192 GMR-----PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G       P+  TY A+     +A ++D+A    Q+M+++G  PD
Sbjct: 393 GGGGHHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPD 437



 Score = 66.2 bits (160), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 88/197 (44%), Gaps = 37/197 (18%)

Query: 72  RNLQ---EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAH 125
           +NL+    +  KM   G+  + V    + D L K G   EA QL  ++K  G  PDVVA+
Sbjct: 166 KNLEMADSLLQKMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAY 225

Query: 126 TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA---------------AA 170
           ++ +     +G+  +A +V  +M  S   PN  TY  ++ GL                A+
Sbjct: 226 SSFVYGLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNTILDGLCKSGKIDTALEMMEQMAS 285

Query: 171 ADGNA-KILG---------------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
           +DG    ++G               +A+  +  M   G RP+  TY+++     +A K++
Sbjct: 286 SDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIE 345

Query: 215 EARGLLQQMKAKGFVPD 231
           EA   +++M  +G  P+
Sbjct: 346 EAVEAVREMAMEGCKPN 362



 Score = 63.9 bits (154), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 65/139 (46%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +     K G   E+ +L  ++  +G  PD + +T V+ +   + +  EAL +   M+ +G
Sbjct: 88  LLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVVASLCKSARLGEALELLEEMIRAG 147

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
             P   T+  LI G         K L  A   L +M   G++ +  TY  + +   +A +
Sbjct: 148 CCPTLITFNTLISGCC-----REKNLEMADSLLQKMAASGVKADVVTYNTLMDGLCKAGR 202

Query: 213 VDEARGLLQQMKAKGFVPD 231
           + EA  LL++MKA G  PD
Sbjct: 203 LQEAEQLLERMKASGCAPD 221



 Score = 57.4 bits (137), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 63/117 (53%), Gaps = 7/117 (5%)

Query: 117 GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK 176
           G  P+ V   A++  ++  G+  +  R+   M A  + PN  +Y  L++GL      +  
Sbjct: 5   GCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLERWH-- 62

Query: 177 ILGDAQKYLMEMVGKGMR--PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
              +A++ + +M+ +G R  P+  TY+ +   + +A KV+E+R LL+++ ++G  PD
Sbjct: 63  ---EAEELVRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPD 116



 Score = 46.6 bits (109), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 69/140 (49%), Gaps = 7/140 (5%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + +  SK G   +  +L   +  +   P+VV++  ++E      +  EA  +   M++ G
Sbjct: 16  LVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLERWHEAEELVRDMISRG 75

Query: 153 --VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
               P+  TY+ L+ G   A       + ++++ L E++ +G+RP+A  YT V  +  ++
Sbjct: 76  GRSTPDMVTYSTLLSGYCKAGK-----VEESRELLKEVISRGLRPDALMYTKVVASLCKS 130

Query: 211 QKVDEARGLLQQMKAKGFVP 230
            ++ EA  LL++M   G  P
Sbjct: 131 ARLGEALELLEEMIRAGCCP 150



 Score = 44.3 bits (103), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 39/153 (25%), Positives = 71/153 (46%), Gaps = 8/153 (5%)

Query: 75  QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+  ++ + GL  +A+   K+  +L K     EAL+L  ++   G  P ++    +I  
Sbjct: 102 RELLKEVISRGLRPDALMYTKVVASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISG 161

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
                  + A  +  +M ASGV  +  TY  L+ GL  A       L +A++ L  M   
Sbjct: 162 CCREKNLEMADSLLQKMAASGVKADVVTYNTLMDGLCKAGR-----LQEAEQLLERMKAS 216

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           G  P+   Y++      ++ KV +A  +L+QM+
Sbjct: 217 GCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQMR 249



 Score = 43.5 bits (101), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 8/101 (7%)

Query: 76  EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHM-----PDVVAHTA 127
           E   +M  EG   NAV    +   L   G   EA ++  ++   G       P V  + A
Sbjct: 349 EAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERMVEEMSSGGGGGHHCPPSVSTYNA 408

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168
           +I     AG+  +AL+ F RM + G  P+  +Y+ +++GLA
Sbjct: 409 LIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLA 449


>gi|15241508|ref|NP_196986.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173968|sp|Q9LEQ7.1|PP382_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g14820, mitochondrial; Flags: Precursor
 gi|9755750|emb|CAC01881.1| putative protein [Arabidopsis thaliana]
 gi|332004697|gb|AED92080.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 598

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 68/129 (52%), Gaps = 5/129 (3%)

Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
           EA +++  + D G  PD+VAH  ++E    + +  +A+++F  M + G  PN  +Y ++I
Sbjct: 315 EAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMI 374

Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
           +     +     I     +Y  +MV  G++P+A  YT +   F   +K+D    LL++M+
Sbjct: 375 RDFCKQSSMETAI-----EYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQ 429

Query: 225 AKGFVPDEK 233
            KG  PD K
Sbjct: 430 EKGHPPDGK 438



 Score = 60.8 bits (146), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 66/138 (47%), Gaps = 11/138 (7%)

Query: 72  RNLQE---IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAH 125
           RNL E   I++ M   GL  + V    M + L +     +A++LF  +K KG  P+V ++
Sbjct: 311 RNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSY 370

Query: 126 TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185
           T +I  +      + A+  F  M+ SG+ P+A  Y  LI G      G  K L    + L
Sbjct: 371 TIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGF-----GTQKKLDTVYELL 425

Query: 186 MEMVGKGMRPNAGTYTAV 203
            EM  KG  P+  TY A+
Sbjct: 426 KEMQEKGHPPDGKTYNAL 443



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 63/120 (52%), Gaps = 5/120 (4%)

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
           +L  ++++KGH PD   + A+I+  A+    +   R++ +M+ + + P+ +T+ +++K  
Sbjct: 423 ELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSY 482

Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
             A +     +G A     EM+ KG+ P+  +YT +    +   K  EA   L++M  KG
Sbjct: 483 FVARNYE---MGRA--VWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKG 537



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 6/129 (4%)

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           A+ +F  +K       V     ++++   A  GKEA +V    L     PN  TY VL+ 
Sbjct: 247 AVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEA-QVLFDKLKERFTPNMMTYTVLLN 305

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
           G     +     L +A +   +M+  G++P+   +  + E  +R+ K  +A  L   MK+
Sbjct: 306 GWCRVRN-----LIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKS 360

Query: 226 KGFVPDEKA 234
           KG  P+ ++
Sbjct: 361 KGPCPNVRS 369



 Score = 42.7 bits (99), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 37/180 (20%), Positives = 79/180 (43%), Gaps = 22/180 (12%)

Query: 49  TKSKLPPPYDPFKKVVDE-EPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEAL 107
           T+ KL   Y+  K++ ++  P D +    +   M  + +  +  ++++ + ++ +     
Sbjct: 414 TQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIE---- 469

Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
                       P +     ++++Y  A   +    V+  M+  G+ P+  +Y VLI+GL
Sbjct: 470 ------------PSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGL 517

Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
            +  +G ++   +A +YL EM+ KGM+     Y      F R  + +    L Q+ K  G
Sbjct: 518 IS--EGKSR---EACRYLEEMLDKGMKTPLIDYNKFAADFHRGGQPEIFEELAQRAKFSG 572


>gi|414880311|tpg|DAA57442.1| TPA: hypothetical protein ZEAMMB73_673693 [Zea mays]
          Length = 770

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 67/138 (48%), Gaps = 5/138 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M     K     EA+QL   +  +G  PD+      + AY + G+ ++ L +  +M + G
Sbjct: 503 MIQFCCKASKMEEAIQLRDDMIKRGFKPDLFTFNTFLRAYCNLGKVEDILHLLDQMKSEG 562

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+  TY  +I G   A D     +  A KYL+E++  G+RPNA  Y A+   + R   
Sbjct: 563 LKPDIVTYGTIIDGYCKAKD-----VHKANKYLIELIKNGLRPNAVIYNALIGGYGRNGS 617

Query: 213 VDEARGLLQQMKAKGFVP 230
           + +A G+L  MK  G  P
Sbjct: 618 ISDAIGVLDTMKHNGIQP 635



 Score = 64.7 bits (156), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 5/136 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M  AL + G    A  + A+++  G  P VV +  +++A   +G+ +EA ++  RM+   
Sbjct: 222 MIKALCRAGEIDAAFVMLAELERSGIQPTVVTYNVLMDALCRSGRVEEAFQLKGRMVEGR 281

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+  T+ +LI GLA       +  G+    L EM G G+ PN   Y  +     R   
Sbjct: 282 LRPSIVTFGILINGLA-----RGQRFGEVDAVLQEMEGFGITPNEVIYNQLIGWHCREGH 336

Query: 213 VDEARGLLQQMKAKGF 228
             EA  L  +M +KG 
Sbjct: 337 CSEALRLFDEMVSKGI 352



 Score = 60.8 bits (146), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 80/194 (41%), Gaps = 36/194 (18%)

Query: 74  LQEIFH---KMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
           +++I H   +M++EGL  + V    + D   K    H+A +   ++   G  P+ V + A
Sbjct: 548 VEDILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDVHKANKYLIELIKNGLRPNAVIYNA 607

Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA---------------- 171
           +I  Y   G   +A+ V   M  +G+ P   TY  L+  +  A                 
Sbjct: 608 LIGGYGRNGSISDAIGVLDTMKHNGIQPTPITYNSLMYWMCHAGLVEEAKEIFAQCILKN 667

Query: 172 ------------DGNAKI--LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
                        G  KI  + +A  Y  EM  + +RPN  TYT +  A+ +    +EA 
Sbjct: 668 IELGVIGYTIIIQGFCKIGKIDEAVMYFKEMHYRDIRPNKMTYTTLMYAYCKCGNKEEAF 727

Query: 218 GLLQQMKAKGFVPD 231
            L  +M + G VPD
Sbjct: 728 KLFDEMVSSGIVPD 741



 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 7/146 (4%)

Query: 88  NNAV--KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVF 145
           N+AV       L K G   EA +++  +  KG   ++    A+I         KEA +V 
Sbjct: 426 NDAVMTACIQELCKRGKHEEAAEIWFLVLGKGLGVNIATSNALIHGLCQGNNMKEATKVL 485

Query: 146 MRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFE 205
             M+ SGV  +  TY ++I+    A+      + +A +   +M+ +G +P+  T+     
Sbjct: 486 KAMVDSGVEFDRITYNIMIQFCCKASK-----MEEAIQLRDDMIKRGFKPDLFTFNTFLR 540

Query: 206 AFVRAQKVDEARGLLQQMKAKGFVPD 231
           A+    KV++   LL QMK++G  PD
Sbjct: 541 AYCNLGKVEDILHLLDQMKSEGLKPD 566



 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 6/115 (5%)

Query: 110 FAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRML-ASGVAPNAYTYAVLIKGLA 168
           F ++  +G  P +     ++EA    GQ   A +VF  M   + VAP+ YTY V+IK L 
Sbjct: 168 FLELSTRGASPSIKTCNILVEALGCGGQLDLARKVFGEMRDGNAVAPDVYTYTVMIKALC 227

Query: 169 AAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
            A + +A  +      L E+   G++P   TY  + +A  R+ +V+EA  L  +M
Sbjct: 228 RAGEIDAAFV-----MLAELERSGIQPTVVTYNVLMDALCRSGRVEEAFQLKGRM 277



 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 6/141 (4%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHM-PDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
           + +AL   G    A ++F +++D   + PDV  +T +I+A   AG+   A  +   +  S
Sbjct: 186 LVEALGCGGQLDLARKVFGEMRDGNAVAPDVYTYTVMIKALCRAGEIDAAFVMLAELERS 245

Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
           G+ P   TY VL+  L  +       + +A +    MV   +RP+  T+  +     R Q
Sbjct: 246 GIQPTVVTYNVLMDALCRSGR-----VEEAFQLKGRMVEGRLRPSIVTFGILINGLARGQ 300

Query: 212 KVDEARGLLQQMKAKGFVPDE 232
           +  E   +LQ+M+  G  P+E
Sbjct: 301 RFGEVDAVLQEMEGFGITPNE 321



 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 5/126 (3%)

Query: 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
           G   + L L  Q+K +G  PD+V +  +I+ Y  A    +A +  + ++ +G+ PNA  Y
Sbjct: 546 GKVEDILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDVHKANKYLIELIKNGLRPNAVIY 605

Query: 161 AVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
             LI G      G    + DA   L  M   G++P   TY ++      A  V+EA+ + 
Sbjct: 606 NALIGGY-----GRNGSISDAIGVLDTMKHNGIQPTPITYNSLMYWMCHAGLVEEAKEIF 660

Query: 221 QQMKAK 226
            Q   K
Sbjct: 661 AQCILK 666



 Score = 51.6 bits (122), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 5/115 (4%)

Query: 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
           GL  EA ++FAQ   K     V+ +T +I+ +   G+  EA+  F  M    + PN  TY
Sbjct: 651 GLVEEAKEIFAQCILKNIELGVIGYTIIIQGFCKIGKIDEAVMYFKEMHYRDIRPNKMTY 710

Query: 161 AVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
             L+   A    GN +   +A K   EMV  G+ P+  +Y  +         +D+
Sbjct: 711 TTLM--YAYCKCGNKE---EAFKLFDEMVSSGIVPDTVSYNTLISGCCEVDSLDK 760



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 21/76 (27%), Positives = 39/76 (51%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +     K G   EA+  F ++  +   P+ + +T ++ AY   G  +EA ++F  M++SG
Sbjct: 678 IIQGFCKIGKIDEAVMYFKEMHYRDIRPNKMTYTTLMYAYCKCGNKEEAFKLFDEMVSSG 737

Query: 153 VAPNAYTYAVLIKGLA 168
           + P+  +Y  LI G  
Sbjct: 738 IVPDTVSYNTLISGCC 753



 Score = 47.8 bits (112), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 77/173 (44%), Gaps = 8/173 (4%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +  +M   G+T N V   ++     ++G   EAL+LF ++  KG    VV +  + +A  
Sbjct: 308 VLQEMEGFGITPNEVIYNQLIGWHCREGHCSEALRLFDEMVSKGIKQTVVTYNLIAKALC 367

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
             G+ + A ++   ML +G+  +   +  ++   A    G  + L    + + EMV + +
Sbjct: 368 KEGEMEHAEQILDEMLLAGMTVHCSLFNSVV---AWHLRGTGR-LDVVLRLIREMVARFL 423

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
           +PN    TA  +   +  K +EA  +   +  KG   +  A   ALI    QG
Sbjct: 424 KPNDAVMTACIQELCKRGKHEEAAEIWFLVLGKGLGVN-IATSNALIHGLCQG 475


>gi|357111070|ref|XP_003557338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Brachypodium distachyon]
          Length = 878

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 78/168 (46%), Gaps = 9/168 (5%)

Query: 77  IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           +F + +++G+  N +    + D   K G   EA  +  ++  KG  P+V    ++++A  
Sbjct: 652 LFEEAKSKGIELNVILYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALV 711

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
              +  EAL  F  M     +PN YTY++LI GL      N   +     +  EM  +G+
Sbjct: 712 KTEEIDEALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFV-----FWQEMQKQGL 766

Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
            PN  TYT +     +   + +A  L ++ K  G +PD  +   ALI+
Sbjct: 767 IPNVVTYTTMISGLAKVGNITDAYSLFERFKTNGGIPDSASFN-ALIE 813



 Score = 68.6 bits (166), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/162 (26%), Positives = 75/162 (46%), Gaps = 8/162 (4%)

Query: 76  EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +I  +M   GL  N +    M D L K     EA ++F    ++G  P+ V + ++I+  
Sbjct: 406 KIRDEMELAGLFPNLLSVNIMVDRLCKANQLEEAHRIFESASERGCNPNSVTYCSLIDGL 465

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G+  +A R+F +ML +G   N   Y  LI+              D  K   EM+ +G
Sbjct: 466 GKKGKIDDAYRLFEKMLDAGHDANPIIYTSLIRNFFMHGRKE-----DGHKIYKEMIRRG 520

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
            RP+        +   +A +V++ R + + MK+ GF+PD ++
Sbjct: 521 GRPDLTLLNTYMDCVFKAGEVEKGRAIFEDMKSFGFLPDVRS 562



 Score = 67.4 bits (163), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L+K     EA  LF + K KG   +V+ ++++I+ +   G+  EA  +   M+  G
Sbjct: 636 IVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGKVGRIDEAYLILEEMMKKG 695

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN YT+  L+  L    +     + +A      M      PN  TY+ +     R QK
Sbjct: 696 LTPNVYTWNSLMDALVKTEE-----IDEALICFQSMKEMKCSPNTYTYSILINGLCRVQK 750

Query: 213 VDEARGLLQQMKAKGFVPD 231
            ++A    Q+M+ +G +P+
Sbjct: 751 YNKAFVFWQEMQKQGLIPN 769



 Score = 67.0 bits (162), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 86/185 (46%), Gaps = 12/185 (6%)

Query: 52  KLPPPYDPFKKVVDE--EPTDPRNLQEIFHKMRTEGLTNNAVKMFD----ALSKDGLTHE 105
           K  PP+  +  ++    E   P    E+  +M+  G    +V +F     AL+++G    
Sbjct: 171 KFRPPFSAYTVLIGALAEARQPERALELLRQMQDVGY-EVSVPLFTTLVRALAREGQMEP 229

Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
           AL L  ++K     PD+V +   I+ +  AG    A + F  + A G+ P+  +Y  ++ 
Sbjct: 230 ALALVDEVKGSCLEPDIVLYNVCIDCFGKAGSVDMAWKFFHELKAHGLRPDDVSYTSMVW 289

Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
            L  A       LG+A++   +M  +   P A  Y  +   +  A++ D+A  LL++++ 
Sbjct: 290 VLCKAGR-----LGEAEELFGQMEAERDVPCAYAYNTMIMGYGSAERFDDAYKLLERLRE 344

Query: 226 KGFVP 230
           +G +P
Sbjct: 345 RGCIP 349



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 72/151 (47%), Gaps = 6/151 (3%)

Query: 95  DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           D + K G   +   +F  +K  G +PDV +++ +I     AGQ +E   +F  M   G A
Sbjct: 533 DCVFKAGEVEKGRAIFEDMKSFGFLPDVRSYSILIHGLTKAGQARETSNIFQAMSQQGFA 592

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
            +A  Y  ++ GL  +       +  A + L EM  K + P   TY ++ +   +  ++D
Sbjct: 593 LDARAYNAVVDGLCKSGK-----VDKAYEVLEEMKVKHVHPTVATYGSIVDGLAKIDRLD 647

Query: 215 EARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
           EA  L ++ K+KG +     +  +LID  G+
Sbjct: 648 EAYMLFEEAKSKG-IELNVILYSSLIDGFGK 677



 Score = 64.3 bits (155), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 5/131 (3%)

Query: 94  FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGV 153
            D   K G    A + F ++K  G  PD V++T+++     AG+  EA  +F +M A   
Sbjct: 253 IDCFGKAGSVDMAWKFFHELKAHGLRPDDVSYTSMVWVLCKAGRLGEAEELFGQMEAERD 312

Query: 154 APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV 213
            P AY Y  +I G      G+A+   DA K L  +  +G  P+  ++ ++     + +KV
Sbjct: 313 VPCAYAYNTMIMGY-----GSAERFDDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKV 367

Query: 214 DEARGLLQQMK 224
           DEA  L   MK
Sbjct: 368 DEALTLFDVMK 378



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 72/160 (45%), Gaps = 12/160 (7%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
           IF  M++ G   +      +   L+K G   E   +F  +  +G   D  A+ AV++   
Sbjct: 547 IFEDMKSFGFLPDVRSYSILIHGLTKAGQARETSNIFQAMSQQGFALDARAYNAVVDGLC 606

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKI--LGDAQKYLMEMVGK 191
            +G+  +A  V   M    V P   TY  ++ GL       AKI  L +A     E   K
Sbjct: 607 KSGKVDKAYEVLEEMKVKHVHPTVATYGSIVDGL-------AKIDRLDEAYMLFEEAKSK 659

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           G+  N   Y+++ + F +  ++DEA  +L++M  KG  P+
Sbjct: 660 GIELNVILYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPN 699



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 76/158 (48%), Gaps = 10/158 (6%)

Query: 77  IFHKMRTEGLTNNAVKMFDALSKDGLTH----EALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           +F KM   G   N + ++ +L ++   H    +  +++ ++  +G  PD+      ++  
Sbjct: 477 LFEKMLDAGHDANPI-IYTSLIRNFFMHGRKEDGHKIYKEMIRRGGRPDLTLLNTYMDCV 535

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
             AG+ ++   +F  M + G  P+  +Y++LI GL  A  G A+   +       M  +G
Sbjct: 536 FKAGEVEKGRAIFEDMKSFGFLPDVRSYSILIHGLTKA--GQAR---ETSNIFQAMSQQG 590

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
              +A  Y AV +   ++ KVD+A  +L++MK K   P
Sbjct: 591 FALDARAYNAVVDGLCKSGKVDKAYEVLEEMKVKHVHP 628



 Score = 50.1 bits (118), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 90/225 (40%), Gaps = 20/225 (8%)

Query: 36  SSSSDQPTKKYVNTKSKLPPPYDPFKKVVDEEPTDPRNLQEIFHKMRT--EGLTNNAVKM 93
           S+SS QP          LPP  D +  V+     D   L+++  +M     GL N A   
Sbjct: 99  SASSSQP----------LPP--DAYNAVLPFLSHDLAALEKVLEEMSHLGYGLPNPACAA 146

Query: 94  FDA-LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
             A L +     +A ++   ++     P   A+T +I A A A Q + AL +  +M   G
Sbjct: 147 LVATLVRSRRLEDAFRVIGAMRHLKFRPPFSAYTVLIGALAEARQPERALELLRQMQDVG 206

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
              +   +  L++ LA         +  A   + E+ G  + P+   Y    + F +A  
Sbjct: 207 YEVSVPLFTTLVRALAREGQ-----MEPALALVDEVKGSCLEPDIVLYNVCIDCFGKAGS 261

Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257
           VD A     ++KA G  PD+ +    +      G  G    LFG+
Sbjct: 262 VDMAWKFFHELKAHGLRPDDVSYTSMVWVLCKAGRLGEAEELFGQ 306



 Score = 44.3 bits (103), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 3/94 (3%)

Query: 77  IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
            + +M+ +GL  N V    M   L+K G   +A  LF + K  G +PD  +  A+IE  +
Sbjct: 757 FWQEMQKQGLIPNVVTYTTMISGLAKVGNITDAYSLFERFKTNGGIPDSASFNALIEGMS 816

Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
           +A +  EA +VF      G   N  T   L+  L
Sbjct: 817 NANRPMEAYQVFEETRLRGCRLNVKTCISLLDAL 850


>gi|224111844|ref|XP_002316000.1| predicted protein [Populus trichocarpa]
 gi|222865040|gb|EEF02171.1| predicted protein [Populus trichocarpa]
          Length = 745

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 73/140 (52%), Gaps = 5/140 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           M D   K G   EA++L+ +++DK   P +V   ++I  +    +  EA R+   +   G
Sbjct: 437 MIDGYVKLGDVEEAVRLYKRLRDKAITPSIVTFNSLIYGFCKNRKVVEARRLLESIKLHG 496

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + P+A TY  L+   A   +GN   L    + L+EM  K + P   TYT V +   + +K
Sbjct: 497 LEPSAVTYTTLMN--AYCEEGNINKL---HELLLEMNLKDIEPTVVTYTVVIKGLCKQRK 551

Query: 213 VDEARGLLQQMKAKGFVPDE 232
           ++E+  LL+ M+AKG  PD+
Sbjct: 552 LEESVQLLEDMRAKGLAPDQ 571



 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 73/138 (52%), Gaps = 5/138 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           +  +L K G   EALQL  +++     PD+V ++ +I      G+ ++A++++  M  + 
Sbjct: 332 LLSSLCKRGQVDEALQLLYEMEANNLQPDLVTYSILIHGLCKQGKVQQAIQLYKEMCFNR 391

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
           + PN++ ++ ++KGL         +L DA+ Y   ++   +RP+   Y  + + +V+   
Sbjct: 392 IFPNSFAHSGILKGLCEKG-----MLSDARMYFDSLIMSNLRPDVTLYNIMIDGYVKLGD 446

Query: 213 VDEARGLLQQMKAKGFVP 230
           V+EA  L ++++ K   P
Sbjct: 447 VEEAVRLYKRLRDKAITP 464



 Score = 62.0 bits (149), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 78/169 (46%), Gaps = 11/169 (6%)

Query: 77  IFHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
           ++ ++R + +T + V  F++L     K+    EA +L   IK  G  P  V +T ++ AY
Sbjct: 453 LYKRLRDKAITPSIVT-FNSLIYGFCKNRKVVEARRLLESIKLHGLEPSAVTYTTLMNAY 511

Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
              G   +   + + M    + P   TY V+IKGL        + L ++ + L +M  KG
Sbjct: 512 CEEGNINKLHELLLEMNLKDIEPTVVTYTVVIKGLC-----KQRKLEESVQLLEDMRAKG 566

Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
           + P+  TY  + + F +A+ + +A  LL  M      P   A    LID
Sbjct: 567 LAPDQITYNTIIQCFCKAKDMRKAFELLDDMLIHNLEP-TPATYNVLID 614



 Score = 56.2 bits (134), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/206 (23%), Positives = 80/206 (38%), Gaps = 33/206 (16%)

Query: 67  EPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVV 123
           E  +   L E+  +M  + +    V    +   L K     E++QL   ++ KG  PD +
Sbjct: 513 EEGNINKLHELLLEMNLKDIEPTVVTYTVVIKGLCKQRKLEESVQLLEDMRAKGLAPDQI 572

Query: 124 AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA-------------AA 170
            +  +I+ +  A   ++A  +   ML   + P   TY VLI GL              + 
Sbjct: 573 TYNTIIQCFCKAKDMRKAFELLDDMLIHNLEPTPATYNVLIDGLCRYGDVEDADRVLVSL 632

Query: 171 ADGNAKIL--------------GDAQ---KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV 213
            D N  +               GDAQ   K   +MV KG   +   Y+AV     +   +
Sbjct: 633 QDRNINLTKVAYTTMIKAHCVKGDAQRAVKVFHQMVEKGFEVSIKDYSAVINRLCKRCLI 692

Query: 214 DEARGLLQQMKAKGFVPDEKAVKEAL 239
           +EA+     M + G  PD++  +  L
Sbjct: 693 NEAKYYFCIMLSDGVSPDQEIFEMML 718



 Score = 55.1 bits (131), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 61/138 (44%), Gaps = 6/138 (4%)

Query: 95  DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
           D L       +A+    Q   K   P VV+   ++  Y   G    A   F  ML  G+ 
Sbjct: 158 DGLCGQSRFRDAVLFLRQNDGKEFAPSVVSFNTIMSRYCKLGLADVAKSFFCMMLKYGIL 217

Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
           P+ Y+Y +LI GL  A       + +A +   +M  +G++P+  TY  V + F     + 
Sbjct: 218 PDTYSYNILIHGLIVAGS-----MEEALELTNDMEKQGLQPDMVTYKIVAKGFHLLGLMS 272

Query: 215 EARGLLQQMKA-KGFVPD 231
            AR ++Q+M   +G  PD
Sbjct: 273 GAREIIQKMLTDEGLKPD 290



 Score = 53.9 bits (128), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 5/139 (3%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
           + D L + G   +A ++   ++D+      VA+T +I+A+   G  + A++VF +M+  G
Sbjct: 612 LIDGLCRYGDVEDADRVLVSLQDRNINLTKVAYTTMIKAHCVKGDAQRAVKVFHQMVEKG 671

Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
              +   Y+ +I  L         ++ +A+ Y   M+  G+ P+   +  +  AF RA  
Sbjct: 672 FEVSIKDYSAVINRLCKRC-----LINEAKYYFCIMLSDGVSPDQEIFEMMLNAFHRAGH 726

Query: 213 VDEARGLLQQMKAKGFVPD 231
           V     LL  M   G + D
Sbjct: 727 VHSVFELLAVMIKFGLLHD 745



 Score = 51.2 bits (121), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 74/156 (47%), Gaps = 8/156 (5%)

Query: 75  QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           + +   ++  GL  +AV    + +A  ++G  ++  +L  ++  K   P VV +T VI+ 
Sbjct: 486 RRLLESIKLHGLEPSAVTYTTLMNAYCEEGNINKLHELLLEMNLKDIEPTVVTYTVVIKG 545

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
                + +E++++   M A G+AP+  TY  +I+    A D     +  A + L +M+  
Sbjct: 546 LCKQRKLEESVQLLEDMRAKGLAPDQITYNTIIQCFCKAKD-----MRKAFELLDDMLIH 600

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
            + P   TY  + +   R   V++A  +L  ++ + 
Sbjct: 601 NLEPTPATYNVLIDGLCRYGDVEDADRVLVSLQDRN 636


>gi|242043154|ref|XP_002459448.1| hypothetical protein SORBIDRAFT_02g004810 [Sorghum bicolor]
 gi|241922825|gb|EER95969.1| hypothetical protein SORBIDRAFT_02g004810 [Sorghum bicolor]
          Length = 316

 Score = 76.3 bits (186), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/136 (30%), Positives = 67/136 (49%), Gaps = 5/136 (3%)

Query: 96  ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
           A  K G   EA   F +++  G MPD+V +T VI+     G+  +A+  F +M+  G++P
Sbjct: 89  AYCKCGRLDEASLTFNKMQQLGFMPDIVTYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSP 148

Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
           N  T+  LI G +            A++   EM+ +G+ PN  T+ ++ +   +  KV E
Sbjct: 149 NIITFTTLIHGFSMYGKWEK-----AEELFYEMMDRGIPPNVNTFNSMIDRLFKEGKVTE 203

Query: 216 ARGLLQQMKAKGFVPD 231
           AR L   M   G  P+
Sbjct: 204 ARKLFDLMPRAGAKPN 219



 Score = 67.0 bits (162), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 5/115 (4%)

Query: 117 GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK 176
           G  P+VV ++ +I     +G   EA  +F  M+ SG  PNA TY  L+ G   A +GN  
Sbjct: 5   GQGPNVVTYSMLINCLCKSGLRAEAREIFNSMIQSGQKPNAATYRSLLHGY--ATEGNLV 62

Query: 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
            + + +     MV  GMRP+   +     A+ +  ++DEA     +M+  GF+PD
Sbjct: 63  DMNNVKDL---MVQNGMRPDRHVFNIEIYAYCKCGRLDEASLTFNKMQQLGFMPD 114



 Score = 65.9 bits (159), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 72/157 (45%), Gaps = 8/157 (5%)

Query: 78  FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
           F+KM+  G   + V    + D L K G   +A+  F Q+ D G  P+++  T +I  ++ 
Sbjct: 103 FNKMQQLGFMPDIVTYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPNIITFTTLIHGFSM 162

Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
            G+ ++A  +F  M+  G+ PN  T+  +I  L          + +A+K    M   G +
Sbjct: 163 YGKWEKAEELFYEMMDRGIPPNVNTFNSMIDRLFKEGK-----VTEARKLFDLMPRAGAK 217

Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
           PN  +Y  +   +  A +V E   LL  M   G  P+
Sbjct: 218 PNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGLKPN 254



 Score = 62.8 bits (151), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 70/155 (45%), Gaps = 24/155 (15%)

Query: 75  QEIFHKMRTEGL---TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
           +E+F++M   G+    N    M D L K+G   EA +LF  +   G  P+VV++  +I  
Sbjct: 170 EELFYEMMDRGIPPNVNTFNSMIDRLFKEGKVTEARKLFDLMPRAGAKPNVVSYNTMIHG 229

Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
           Y  AG+  E +++   ML  G+ PNA     L+ G                     M+  
Sbjct: 230 YFIAGEVGEVMKLLDDMLLIGLKPNAVNLNTLLDG---------------------MLSI 268

Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK 226
           G++PN  T   + ++     ++++   L ++M +K
Sbjct: 269 GLKPNVDTCKTLIDSCCEDDRIEDILTLFREMLSK 303



 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 68/185 (36%), Gaps = 41/185 (22%)

Query: 93  MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV------------------------ 128
           + + L K GL  EA ++F  +   G  P+   + ++                        
Sbjct: 16  LINCLCKSGLRAEAREIFNSMIQSGQKPNAATYRSLLHGYATEGNLVDMNNVKDLMVQNG 75

Query: 129 -----------IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKI 177
                      I AY   G+  EA   F +M   G  P+  TY  +I GL          
Sbjct: 76  MRPDRHVFNIEIYAYCKCGRLDEASLTFNKMQQLGFMPDIVTYTTVIDGLCKIGR----- 130

Query: 178 LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKE 237
           L DA     +M+  G+ PN  T+T +   F    K ++A  L  +M  +G  P+      
Sbjct: 131 LDDAMSRFCQMIDDGLSPNIITFTTLIHGFSMYGKWEKAEELFYEMMDRGIPPNVNTFN- 189

Query: 238 ALIDK 242
           ++ID+
Sbjct: 190 SMIDR 194



 Score = 38.1 bits (87), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 5/84 (5%)

Query: 148 MLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAF 207
           M   G  PN  TY++LI  L  +      +  +A++    M+  G +PNA TY ++   +
Sbjct: 1   MSRDGQGPNVVTYSMLINCLCKSG-----LRAEAREIFNSMIQSGQKPNAATYRSLLHGY 55

Query: 208 VRAQKVDEARGLLQQMKAKGFVPD 231
                + +   +   M   G  PD
Sbjct: 56  ATEGNLVDMNNVKDLMVQNGMRPD 79


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.317    0.132    0.371 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,902,293,585
Number of Sequences: 23463169
Number of extensions: 154631355
Number of successful extensions: 596652
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5875
Number of HSP's successfully gapped in prelim test: 4362
Number of HSP's that attempted gapping in prelim test: 509954
Number of HSP's gapped (non-prelim): 56600
length of query: 257
length of database: 8,064,228,071
effective HSP length: 139
effective length of query: 118
effective length of database: 9,097,814,876
effective search space: 1073542155368
effective search space used: 1073542155368
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 75 (33.5 bits)