BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043311
(257 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SZL5|PP356_ARATH Pentatricopeptide repeat-containing protein At4g38150
OS=Arabidopsis thaliana GN=At4g38150 PE=2 SV=1
Length = 302
Score = 145 bits (367), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 73/174 (41%), Positives = 109/174 (62%), Gaps = 6/174 (3%)
Query: 71 PRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
P + EIF KM+ GL NAV M D L KDGL EA++LF ++DKG +P+VV +TAV+E
Sbjct: 115 PEDSDEIFKKMKEGGLIPNAVAMLDGLCKDGLVQEAMKLFGLMRDKGTIPEVVIYTAVVE 174
Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
A+ A + ++A R+F +M +G+APNA++Y VL++GL N +L DA + EM+
Sbjct: 175 AFCKAHKIEDAKRIFRKMQNNGIAPNAFSYGVLVQGLY-----NCNMLDDAVAFCSEMLE 229
Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRG 244
G PN T+ + +A R + V++A+ + + KGF + KAVKE +DKR
Sbjct: 230 SGHSPNVPTFVELVDALCRVKGVEQAQSAIDTLNQKGFAVNVKAVKE-FMDKRA 282
>sp|Q8S8P6|PP180_ARATH Pentatricopeptide repeat-containing protein At2g32630
OS=Arabidopsis thaliana GN=At2g32630 PE=3 SV=1
Length = 624
Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 85/161 (52%), Gaps = 10/161 (6%)
Query: 80 KMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGK 139
K+ T TN + D K+G EA +LF ++ KG P+ + + +I AY G+ K
Sbjct: 466 KLSTVSYTN----LIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIK 521
Query: 140 EALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGT 199
EA ++ M A+G+ P++YTY LI G A + + +A + EM KG+ N+ T
Sbjct: 522 EARKLRANMEANGMDPDSYTYTSLIHGECIADN-----VDEAMRLFSEMGLKGLDQNSVT 576
Query: 200 YTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
YT + +A K DEA GL +MK KG+ D K V ALI
Sbjct: 577 YTVMISGLSKAGKSDEAFGLYDEMKRKGYTIDNK-VYTALI 616
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 80/165 (48%), Gaps = 8/165 (4%)
Query: 70 DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
D ++ + M+ +G+ N V + + K+G +A +LF +++++G DV +T
Sbjct: 274 DFSGVEGVLKVMKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRERGIESDVHVYT 333
Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
++I G K A +F + G++P++YTY LI G+ + +G A+ +
Sbjct: 334 SLISWNCRKGNMKRAFLLFDELTEKGLSPSSYTYGALIDGVCKVGE-----MGAAEILMN 388
Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
EM KG+ + + + + R VDEA + M+ KGF D
Sbjct: 389 EMQSKGVNITQVVFNTLIDGYCRKGMVDEASMIYDVMEQKGFQAD 433
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 70/174 (40%), Gaps = 24/174 (13%)
Query: 77 IFHKMRTEGLTNNAVKMFDALSKDGLTHE-------------------ALQLFAQIKDKG 117
+F G+ +++FD + K GL+ + L++F ++ D G
Sbjct: 160 VFRVYVDNGMFEEGLRVFDYMVKKGLSIDERSCIVFLVAAKKRRRIDLCLEIFRRMVDSG 219
Query: 118 HMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKI 177
V + T V+E G+ +++ ++ G+ P AYTY +I D
Sbjct: 220 VKITVYSLTIVVEGLCRRGEVEKSKKLIKEFSVKGIKPEAYTYNTIINAYVKQRD----- 274
Query: 178 LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
+ L M G+ N TYT + E V+ K+ +A L +M+ +G D
Sbjct: 275 FSGVEGVLKVMKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRERGIESD 328
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 73/158 (46%), Gaps = 8/158 (5%)
Query: 77 IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
+F ++ +GL+ ++ + D + K G A L +++ KG V +I+ Y
Sbjct: 351 LFDELTEKGLSPSSYTYGALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLIDGYC 410
Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
G EA ++ M G + +T + A+ K +A+++L M+ G+
Sbjct: 411 RKGMVDEASMIYDVMEQKGFQADVFTCNTI-----ASCFNRLKRYDEAKQWLFRMMEGGV 465
Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
+ + +YT + + + + V+EA+ L +M +KG P+
Sbjct: 466 KLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPN 503
>sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710,
mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2
SV=1
Length = 987
Score = 91.7 bits (226), Expect = 4e-18, Method: Composition-based stats.
Identities = 58/179 (32%), Positives = 89/179 (49%), Gaps = 15/179 (8%)
Query: 77 IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
+F +M+ GL + M D+ K GL +A + F ++++ G P+VV +TA+I AY
Sbjct: 505 LFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYL 564
Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD-----------GNAKILGDAQ 182
A + A +F ML+ G PN TY+ LI G A +K + D
Sbjct: 565 KAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVD 624
Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
Y + RPN TY A+ + F ++ +V+EAR LL M +G P++ V +ALID
Sbjct: 625 MYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQ-IVYDALID 682
Score = 68.6 bits (166), Expect = 4e-11, Method: Composition-based stats.
Identities = 63/246 (25%), Positives = 110/246 (44%), Gaps = 26/246 (10%)
Query: 14 PSPKRSLRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKKVVDEEPTDPRN 73
PSPK I N+ V+A S + + KK V K P Y + ++ D +
Sbjct: 370 PSPK----IFNSLVHAYCTSGDHSYAYKLLKKMV--KCGHMPGYVVYNILIGSICGDKDS 423
Query: 74 L--------QEIFHKMRTEGLTNNAVKMFD---ALSKDGLTHEALQLFAQIKDKGHMPDV 122
L ++ + +M G+ N + + L G +A + ++ +G +PD
Sbjct: 424 LNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDT 483
Query: 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQ 182
++ V+ +A + + A +F M G+ + YTY +++ A ++ A+
Sbjct: 484 STYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAG-----LIEQAR 538
Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID- 241
K+ EM G PN TYTA+ A+++A+KV A L + M ++G +P+ ALID
Sbjct: 539 KWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPN-IVTYSALIDG 597
Query: 242 --KRGQ 245
K GQ
Sbjct: 598 HCKAGQ 603
Score = 68.6 bits (166), Expect = 5e-11, Method: Composition-based stats.
Identities = 43/160 (26%), Positives = 76/160 (47%), Gaps = 8/160 (5%)
Query: 75 QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
+++ M EG N + + D L K G EA ++ ++ + G + ++++I+
Sbjct: 659 RKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDR 718
Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
Y + A +V +ML + APN Y +I GL + +A K + M K
Sbjct: 719 YFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTD-----EAYKLMQMMEEK 773
Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
G +PN TYTA+ + F K++ LL++M +KG P+
Sbjct: 774 GCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPN 813
Score = 64.7 bits (156), Expect = 7e-10, Method: Composition-based stats.
Identities = 49/158 (31%), Positives = 73/158 (46%), Gaps = 10/158 (6%)
Query: 76 EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
++ KM N V +M D L K G T EA +L +++KG P+VV +TA+I+ +
Sbjct: 730 KVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGF 789
Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
G+ + L + RM + GVAPN TY VLI +G + A L EM
Sbjct: 790 GMIGKIETCLELLERMGSKGVAPNYVTYRVLID--HCCKNGALDV---AHNLLEEMKQTH 844
Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
+ Y V E F ++ E+ GLL ++ P
Sbjct: 845 WPTHTAGYRKVIEGF--NKEFIESLGLLDEIGQDDTAP 880
Score = 62.4 bits (150), Expect = 3e-09, Method: Composition-based stats.
Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 5/145 (3%)
Query: 87 TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFM 146
T+ K+ + L A LF ++K G + DV +T +++++ AG ++A + F
Sbjct: 483 TSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFN 542
Query: 147 RMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEA 206
M G PN TY LI AK + A + M+ +G PN TY+A+ +
Sbjct: 543 EMREVGCTPNVVTYTALIHAYL-----KAKKVSYANELFETMLSEGCLPNIVTYSALIDG 597
Query: 207 FVRAQKVDEARGLLQQMKAKGFVPD 231
+A +V++A + ++M VPD
Sbjct: 598 HCKAGQVEKACQIFERMCGSKDVPD 622
Score = 58.2 bits (139), Expect = 6e-08, Method: Composition-based stats.
Identities = 43/175 (24%), Positives = 72/175 (41%), Gaps = 24/175 (13%)
Query: 76 EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLF----------------AQIKDK 116
E+F M +EG N V + D K G +A Q+F Q D
Sbjct: 574 ELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDN 633
Query: 117 GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK 176
P+VV + A+++ + + + +EA ++ M G PN Y LI GL
Sbjct: 634 SERPNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGK---- 689
Query: 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
L +AQ+ EM G TY+++ + + + ++ D A +L +M P+
Sbjct: 690 -LDEAQEVKTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPN 743
Score = 54.3 bits (129), Expect = 7e-07, Method: Composition-based stats.
Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 12/151 (7%)
Query: 81 MRTEGLTNNAVKMFD-ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGK 139
+R +G T ++ F +L K G EAL L ++ + +PD V +T +I A +
Sbjct: 266 LRMDGFT---LRCFAYSLCKVGKWREALTL---VETENFVPDTVFYTKLISGLCEASLFE 319
Query: 140 EALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGT 199
EA+ RM A+ PN TY+ L+ G N K LG ++ L M+ +G P+
Sbjct: 320 EAMDFLNRMRATSCLPNVVTYSTLLCGCL-----NKKQLGRCKRVLNMMMMEGCYPSPKI 374
Query: 200 YTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
+ ++ A+ + A LL++M G +P
Sbjct: 375 FNSLVHAYCTSGDHSYAYKLLKKMVKCGHMP 405
Score = 51.2 bits (121), Expect = 7e-06, Method: Composition-based stats.
Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 1/125 (0%)
Query: 116 KGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADG-N 174
+G P +++ AY ++G A ++ +M+ G P Y +LI + D N
Sbjct: 366 EGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLN 425
Query: 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
+L A+K EM+ G+ N ++ A K ++A ++++M +GF+PD
Sbjct: 426 CDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTST 485
Query: 235 VKEAL 239
+ L
Sbjct: 486 YSKVL 490
Score = 39.3 bits (90), Expect = 0.027, Method: Composition-based stats.
Identities = 42/168 (25%), Positives = 74/168 (44%), Gaps = 20/168 (11%)
Query: 76 EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA----V 128
E+ +M ++G+ N V + D K+G A L ++K + H P HTA V
Sbjct: 800 ELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLEEMK-QTHWP---THTAGYRKV 855
Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA--DGNAKILGDAQKYLM 186
IE + + E+L + + AP Y +LI L A + ++L + +
Sbjct: 856 IEGFNK--EFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSA 913
Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
+V + TY ++ E+ A KV+ A L +M KG +P+ ++
Sbjct: 914 TLVDY-----SSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQS 956
Score = 32.3 bits (72), Expect = 3.6, Method: Composition-based stats.
Identities = 31/139 (22%), Positives = 54/139 (38%), Gaps = 14/139 (10%)
Query: 95 DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
D L L H + L A ++ G A++ G+ +EAL + +
Sbjct: 249 DRLDSASLIHREMSL-ANLRMDGFTLRCFAYS-----LCKVGKWREALTL---VETENFV 299
Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
P+ Y LI GL A+ + +A +L M PN TY+ + + +++
Sbjct: 300 PDTVFYTKLISGLCEAS-----LFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLG 354
Query: 215 EARGLLQQMKAKGFVPDEK 233
+ +L M +G P K
Sbjct: 355 RCKRVLNMMMMEGCYPSPK 373
>sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150
OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1
Length = 761
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 85/159 (53%), Gaps = 8/159 (5%)
Query: 76 EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
E + +M+ GL N V + DA K+G+ +A++ + ++ G +P+ +T++I+A
Sbjct: 353 EFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDAN 412
Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
G +A R+ ML GV N TY LI GL +A+ + +A++ +M G
Sbjct: 413 CKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLC-----DAERMKEAEELFGKMDTAG 467
Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
+ PN +Y A+ FV+A+ +D A LL ++K +G PD
Sbjct: 468 VIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPD 506
Score = 78.6 bits (192), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 78/148 (52%), Gaps = 11/148 (7%)
Query: 86 LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVF 145
+T NA + + K G L+ + ++K G P+VV+++ +++A+ G ++A++ +
Sbjct: 333 ITYNA--LINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFY 390
Query: 146 MRMLASGVAPNAYTYAVLIKGLAAAADGNAKI--LGDAQKYLMEMVGKGMRPNAGTYTAV 203
+ M G+ PN YTY LI D N KI L DA + EM+ G+ N TYTA+
Sbjct: 391 VDMRRVGLVPNEYTYTSLI-------DANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTAL 443
Query: 204 FEAFVRAQKVDEARGLLQQMKAKGFVPD 231
+ A+++ EA L +M G +P+
Sbjct: 444 IDGLCDAERMKEAEELFGKMDTAGVIPN 471
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 69/149 (46%), Gaps = 6/149 (4%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
M D + K+G A LF ++K +G +PD V + ++I+ + G+ + + F M
Sbjct: 268 MIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMC 327
Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
P+ TY LI L ++ EM G G++PN +Y+ + +AF +
Sbjct: 328 CEPDVITYNALINCFCKFGK-----LPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGM 382
Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALID 241
+ +A M+ G VP+E +LID
Sbjct: 383 MQQAIKFYVDMRRVGLVPNEYTYT-SLID 410
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 9/145 (6%)
Query: 76 EIFHKMRTE-GLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
+ F+++ + GL NA M D L KD A LF Q+ KG +PD A+T++++
Sbjct: 598 DYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDG 657
Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
G EAL + +M G+ + Y L+ GL+ + L A+ +L EM+G+
Sbjct: 658 NFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLS-----HCNQLQKARSFLEEMIGE 712
Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEA 216
G+ P+ +V + +DEA
Sbjct: 713 GIHPDEVLCISVLKKHYELGCIDEA 737
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 6/136 (4%)
Query: 112 QIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA 171
++K+ G + + +T +++AY +G E L + M + T+ VLI GL
Sbjct: 532 EMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLC--- 588
Query: 172 DGNAKILGDAQKYLMEMVGK-GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
K++ A Y + G++ NA +TA+ + + +V+ A L +QM KG VP
Sbjct: 589 --KNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVP 646
Query: 231 DEKAVKEALIDKRGQG 246
D A + QG
Sbjct: 647 DRTAYTSLMDGNFKQG 662
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 6/127 (4%)
Query: 119 MPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKIL 178
+P A+ G +EA++ F +M V P + L+ A +
Sbjct: 189 VPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTD---- 244
Query: 179 GDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEA 238
D +++ +M+G G RP TY + + + V+ ARGL ++MK +G VPD +
Sbjct: 245 -DVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPD-TVTYNS 302
Query: 239 LIDKRGQ 245
+ID G+
Sbjct: 303 MIDGFGK 309
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 83/191 (43%), Gaps = 13/191 (6%)
Query: 41 QPTKKYVNTKS-KLPPPYDPFKKVVDEEPTDPRNLQEIF---HKMRTEGLTNNAVK---M 93
Q K YV+ + L P + ++D NL + F ++M G+ N V +
Sbjct: 385 QAIKFYVDMRRVGLVPNEYTYTSLIDAN-CKIGNLSDAFRLGNEMLQVGVEWNVVTYTAL 443
Query: 94 FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGV 153
D L EA +LF ++ G +P++ ++ A+I + A AL + + G+
Sbjct: 444 IDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGI 503
Query: 154 APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV 213
P+ Y I GL + A A+ + EM G++ N+ YT + +A+ ++
Sbjct: 504 KPDLLLYGTFIWGLCSLEKIEA-----AKVVMNEMKECGIKANSLIYTTLMDAYFKSGNP 558
Query: 214 DEARGLLQQMK 224
E LL +MK
Sbjct: 559 TEGLHLLDEMK 569
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 12/169 (7%)
Query: 68 PTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQI-KDKGHMPDVVAHT 126
PT+ +L + ++ E + D L K+ L +A+ F +I D G + T
Sbjct: 558 PTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFT 617
Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
A+I+ Q + A +F +M+ G+ P+ Y L+ DGN K G+ + L
Sbjct: 618 AMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLM-------DGNFK-QGNVLEALA 669
Query: 187 ---EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
+M GM+ + YT++ ++ +AR L++M +G PDE
Sbjct: 670 LRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDE 718
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 80/165 (48%), Gaps = 8/165 (4%)
Query: 70 DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
D R + F++M + +T + + + + G EA +LF ++ KG PD V T
Sbjct: 366 DIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFT 425
Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
+I Y AG K+A RV M+ +G +PN TY LI GL D L A + L
Sbjct: 426 ELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGD-----LDSANELLH 480
Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
EM G++PN TY ++ ++ ++EA L+ + +A G D
Sbjct: 481 EMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNAD 525
Score = 78.2 bits (191), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 80/168 (47%), Gaps = 8/168 (4%)
Query: 70 DPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
D + E+ H+M GL N + + L K G EA++L + + G D V +T
Sbjct: 471 DLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYT 530
Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
+++AY +G+ +A + ML G+ P T+ VL+ G +L D +K L
Sbjct: 531 TLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHG-----MLEDGEKLLN 585
Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
M+ KG+ PNA T+ ++ + + + A + + M ++G PD K
Sbjct: 586 WMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKT 633
Score = 77.8 bits (190), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 8/160 (5%)
Query: 75 QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
+E F +M +G+ + V + D K G A + F ++ + PDV+ +TA+I
Sbjct: 336 EEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISG 395
Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
+ G EA ++F M G+ P++ T+ LI G A G+ K DA + M+
Sbjct: 396 FCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKA--GHMK---DAFRVHNHMIQA 450
Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
G PN TYT + + + +D A LL +M G P+
Sbjct: 451 GCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPN 490
Score = 67.8 bits (164), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 81/177 (45%), Gaps = 9/177 (5%)
Query: 75 QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
QEI +M +GL V + + G+ + +L + KG P+ ++++
Sbjct: 546 QEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQ 605
Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
Y K A ++ M + GV P+ TY L+KG A + + +A EM GK
Sbjct: 606 YCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARN-----MKEAWFLFQEMKGK 660
Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFR 248
G + TY+ + + F++ +K EAR + QM+ +G D K + + D + +G R
Sbjct: 661 GFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAAD-KEIFDFFSDTKYKGKR 716
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 5/131 (3%)
Query: 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
G EA L ++ KG+ PDV++++ V+ Y G+ + ++ M G+ PN+Y Y
Sbjct: 260 GRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIY 319
Query: 161 AVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
+I L L +A++ EM+ +G+ P+ YT + + F + + A
Sbjct: 320 GSIIGLLCRICK-----LAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFF 374
Query: 221 QQMKAKGFVPD 231
+M ++ PD
Sbjct: 375 YEMHSRDITPD 385
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 74/158 (46%), Gaps = 8/158 (5%)
Query: 77 IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
+ + M G + N V + D L K+G A +L ++ G P++ + +++
Sbjct: 443 VHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLC 502
Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
+G +EA+++ A+G+ + TY L+ + + + AQ+ L EM+GKG+
Sbjct: 503 KSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGE-----MDKAQEILKEMLGKGL 557
Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
+P T+ + F +++ LL M AKG P+
Sbjct: 558 QPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPN 595
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 62/127 (48%), Gaps = 5/127 (3%)
Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
EA + F+++ +G +PD V +T +I+ + G + A + F M + + P+ TY +I
Sbjct: 334 EAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAII 393
Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
G D + +A K EM KG+ P++ T+T + + +A + +A + M
Sbjct: 394 SGFCQIGD-----MVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMI 448
Query: 225 AKGFVPD 231
G P+
Sbjct: 449 QAGCSPN 455
Score = 38.1 bits (87), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 56/146 (38%), Gaps = 18/146 (12%)
Query: 86 LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVF 145
+T++ V+ FD L KD G P V + G +EA RVF
Sbjct: 153 VTDSFVQFFDLLV------------YTYKDWGSDPRVF--DVFFQVLVDFGLLREARRVF 198
Query: 146 MRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFE 205
+ML G+ + + V + L+ A A E G+ N +Y V
Sbjct: 199 EKMLNYGLVLSVDSCNVYLTRLSKDCYKTAT----AIIVFREFPEVGVCWNVASYNIVIH 254
Query: 206 AFVRAQKVDEARGLLQQMKAKGFVPD 231
+ ++ EA LL M+ KG+ PD
Sbjct: 255 FVCQLGRIKEAHHLLLLMELKGYTPD 280
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 82/159 (51%), Gaps = 8/159 (5%)
Query: 76 EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
E+ KM + +AVK + D L KDG A LF +++ KG D++ + +I +
Sbjct: 249 ELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGF 308
Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
+AG+ + ++ M+ ++PN T++VLI L +A + L EM+ +G
Sbjct: 309 CNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGK-----LREADQLLKEMMQRG 363
Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
+ PN TY ++ + F + +++EA ++ M +KG PD
Sbjct: 364 IAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPD 402
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 72/139 (51%), Gaps = 5/139 (3%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
+ D+ K+G EA QL ++ +G P+ + + ++I+ + + +EA+++ M++ G
Sbjct: 339 LIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKG 398
Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
P+ T+ +LI G A + D + EM +G+ N TY + + F ++ K
Sbjct: 399 CDPDIMTFNILINGYCKANR-----IDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGK 453
Query: 213 VDEARGLLQQMKAKGFVPD 231
++ A+ L Q+M ++ PD
Sbjct: 454 LEVAKKLFQEMVSRRVRPD 472
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 74/160 (46%), Gaps = 8/160 (5%)
Query: 76 EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
E+F +M G+ N V + + G A +LF ++ + PD+V++ +++
Sbjct: 424 ELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGL 483
Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
G+ ++AL +F ++ S + + Y ++I G+ NA + DA + KG
Sbjct: 484 CDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMC-----NASKVDDAWDLFCSLPLKG 538
Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
++ +A Y + R + +A L ++M +G PDE
Sbjct: 539 VKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDE 578
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 73/169 (43%), Gaps = 30/169 (17%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
+ + L +G +A+ L ++ + G P+ V + V+ +GQ A+ + +M
Sbjct: 199 LVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERN 258
Query: 153 VAPNAYTYAVLIKGLAA-------------------AAD-----------GNAKILGDAQ 182
+ +A Y+++I GL AD NA D
Sbjct: 259 IKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGA 318
Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
K L +M+ + + PN T++ + ++FV+ K+ EA LL++M +G P+
Sbjct: 319 KLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPN 367
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/139 (22%), Positives = 66/139 (47%), Gaps = 5/139 (3%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
+ + L + EAL+L ++ + GH P ++ ++ G+ +A+ + RM+ +G
Sbjct: 164 LLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETG 223
Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
PN TY ++ + + G + A + L +M + ++ +A Y+ + + +
Sbjct: 224 FQPNEVTYGPVLNVMCKS--GQTAL---AMELLRKMEERNIKLDAVKYSIIIDGLCKDGS 278
Query: 213 VDEARGLLQQMKAKGFVPD 231
+D A L +M+ KGF D
Sbjct: 279 LDNAFNLFNEMEIKGFKAD 297
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 62/144 (43%), Gaps = 5/144 (3%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
+ D L +G +AL++F +I+ D+ + +I +A + +A +F + G
Sbjct: 479 LLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKG 538
Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
V +A Y ++I L L A +M +G P+ TY + A +
Sbjct: 539 VKLDARAYNIMISELCRKDS-----LSKADILFRKMTEEGHAPDELTYNILIRAHLGDDD 593
Query: 213 VDEARGLLQQMKAKGFVPDEKAVK 236
A L+++MK+ GF D VK
Sbjct: 594 ATTAAELIEEMKSSGFPADVSTVK 617
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 58/135 (42%), Gaps = 7/135 (5%)
Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
A +I G+ PD V ++ + EAL + RM+ G P T L+
Sbjct: 142 AFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVN 201
Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
GL N K+ DA + MV G +PN TY V ++ + A LL++M+
Sbjct: 202 GLCL----NGKV-SDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEE 256
Query: 226 KGFVPDEKAVKEALI 240
+ D AVK ++I
Sbjct: 257 RNIKLD--AVKYSII 269
Score = 35.8 bits (81), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/126 (20%), Positives = 52/126 (41%), Gaps = 5/126 (3%)
Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
+A+ LF + +P V+ + A A Q + L + +M + G+A + YT +++I
Sbjct: 71 DAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMI 130
Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
+ L A + +++ G P+ + + +V EA L+ +M
Sbjct: 131 NCFC-----RCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMV 185
Query: 225 AKGFVP 230
G P
Sbjct: 186 EMGHKP 191
Score = 30.8 bits (68), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 99 KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAY 158
KD L+ + LF ++ ++GH PD + + +I A+ A + M +SG +
Sbjct: 556 KDSLSKADI-LFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMKSSGFPADVS 614
Query: 159 TYAVLIKGLAAA 170
T ++I L++
Sbjct: 615 TVKMVINMLSSG 626
>sp|O81028|PP171_ARATH Pentatricopeptide repeat-containing protein At2g26790,
mitochondrial OS=Arabidopsis thaliana GN=At2g26790 PE=3
SV=1
Length = 799
Score = 85.5 bits (210), Expect = 3e-16, Method: Composition-based stats.
Identities = 49/141 (34%), Positives = 80/141 (56%), Gaps = 7/141 (4%)
Query: 94 FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGV 153
FDALSK G EA +L ++KD+G +PDV+ +T +I+ Y G+ +AL + M+ +G+
Sbjct: 395 FDALSKLGRVEEAFELLQEMKDRGIVPDVINYTTLIDGYCLQGKVVDALDLIDEMIGNGM 454
Query: 154 APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV 213
+P+ TY VL+ GL A +G+ + + + M +G +PNA T + + E A+KV
Sbjct: 455 SPDLITYNVLVSGL--ARNGHEE---EVLEIYERMKAEGPKPNAVTNSVIIEGLCFARKV 509
Query: 214 DEARGLLQQMKAKGFVPDEKA 234
EA ++ K P+ KA
Sbjct: 510 KEAEDFFSSLEQK--CPENKA 528
Score = 51.2 bits (121), Expect = 8e-06, Method: Composition-based stats.
Identities = 48/193 (24%), Positives = 79/193 (40%), Gaps = 28/193 (14%)
Query: 72 RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
R Q +F M GL + M + +A LF +K +G PDVV +T +
Sbjct: 608 REAQVLFDTMVERGLIPDLFTYTIMIHTYCRLNELQKAESLFEDMKQRGIKPDVVTYTVL 667
Query: 129 IEAY---------ASAGQG----KEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNA 175
++ Y + QG ++A V A+G+ + Y VLI D
Sbjct: 668 LDRYLKLDPEHHETCSVQGEVGKRKASEVLREFSAAGIGLDVVCYTVLI-------DRQC 720
Query: 176 KI--LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK 233
K+ L A + M+ G+ P+ YT + ++ R +D A L+ ++ K +P E
Sbjct: 721 KMNNLEQAAELFDRMIDSGLEPDMVAYTTLISSYFRKGYIDMAVTLVTELSKKYNIPSES 780
Query: 234 ---AVKEALIDKR 243
AVK A + +
Sbjct: 781 FEAAVKSAALKAK 793
Score = 50.1 bits (118), Expect = 2e-05, Method: Composition-based stats.
Identities = 37/148 (25%), Positives = 63/148 (42%), Gaps = 8/148 (5%)
Query: 92 KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
KM A K EA LF + ++G +PD+ +T +I Y + ++A +F M
Sbjct: 596 KMIGAFCKLNNVREAQVLFDTMVERGLIPDLFTYTIMIHTYCRLNELQKAESLFEDMKQR 655
Query: 152 GVAPNAYTYAVLIK---GLAAAADGNAKILGD-----AQKYLMEMVGKGMRPNAGTYTAV 203
G+ P+ TY VL+ L + G+ A + L E G+ + YT +
Sbjct: 656 GIKPDVVTYTVLLDRYLKLDPEHHETCSVQGEVGKRKASEVLREFSAAGIGLDVVCYTVL 715
Query: 204 FEAFVRAQKVDEARGLLQQMKAKGFVPD 231
+ + +++A L +M G PD
Sbjct: 716 IDRQCKMNNLEQAAELFDRMIDSGLEPD 743
Score = 45.1 bits (105), Expect = 5e-04, Method: Composition-based stats.
Identities = 44/198 (22%), Positives = 81/198 (40%), Gaps = 60/198 (30%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE---------------------- 130
+ L+++G E L+++ ++K +G P+ V ++ +IE
Sbjct: 464 LVSGLARNGHEEEVLEIYERMKAEGPKPNAVTNSVIIEGLCFARKVKEAEDFFSSLEQKC 523
Query: 131 ---------AYASAGQGKEALRVFMRM---LASGVAPNAYTYAVLIKG-LAAAAD----- 172
Y AG K+A + F+R+ L V + +++ I+G L A D
Sbjct: 524 PENKASFVKGYCEAGLSKKAYKAFVRLEYPLRKSVYIKLF-FSLCIEGYLEKAHDVLKKM 582
Query: 173 -------GNA---KILG---------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV 213
G + K++G +AQ MV +G+ P+ TYT + + R ++
Sbjct: 583 SAYRVEPGRSMCGKMIGAFCKLNNVREAQVLFDTMVERGLIPDLFTYTIMIHTYCRLNEL 642
Query: 214 DEARGLLQQMKAKGFVPD 231
+A L + MK +G PD
Sbjct: 643 QKAESLFEDMKQRGIKPD 660
Score = 42.4 bits (98), Expect = 0.003, Method: Composition-based stats.
Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 5/126 (3%)
Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
A + ++++ G DV A AVI+ Y EAL +ML G+ N +++++
Sbjct: 302 AESVIIEMEEIGFGLDVYACLAVIDRYCKNMNLPEALGFLDKMLGKGLKVNCVIVSLILQ 361
Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
+ +A + E + + Y F+A + +V+EA LLQ+MK
Sbjct: 362 CYC-----KMDMCLEALEKFKEFRDMNIFLDRVCYNVAFDALSKLGRVEEAFELLQEMKD 416
Query: 226 KGFVPD 231
+G VPD
Sbjct: 417 RGIVPD 422
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 85.1 bits (209), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 82/160 (51%), Gaps = 8/160 (5%)
Query: 76 EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
E +MR GL N + D S+ G +EA ++ ++ D G P VV + A+I +
Sbjct: 366 EFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGH 425
Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
G+ ++A+ V M G++P+ +Y+ ++ G + D + +A + EMV KG
Sbjct: 426 CVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYD-----VDEALRVKREMVEKG 480
Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
++P+ TY+++ + F ++ EA L ++M G PDE
Sbjct: 481 IKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDE 520
Score = 74.7 bits (182), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 5/134 (3%)
Query: 98 SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA 157
K+G H+AL + A++ G P V+ +T++I + AG A+ +M G+ PN
Sbjct: 321 CKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNE 380
Query: 158 YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
TY L+ G + N +A + L EM G P+ TY A+ K+++A
Sbjct: 381 RTYTTLVDGFSQKGYMN-----EAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAI 435
Query: 218 GLLQQMKAKGFVPD 231
+L+ MK KG PD
Sbjct: 436 AVLEDMKEKGLSPD 449
Score = 71.6 bits (174), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 82/179 (45%), Gaps = 11/179 (6%)
Query: 77 IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
+F KM T+G N V + D K + +L + KG P+++++ VI
Sbjct: 227 LFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLC 286
Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
G+ KE V M G + + TY LIKG + + ++ A EM+ G+
Sbjct: 287 REGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHA-----EMLRHGL 341
Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVIN 252
P+ TYT++ + +A ++ A L QM+ +G P+E+ L+D Q +G +N
Sbjct: 342 TPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYT-TLVDGFSQ--KGYMN 397
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 68/131 (51%), Gaps = 5/131 (3%)
Query: 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160
G +A+ + +K+KG PDVV+++ V+ + + EALRV M+ G+ P+ TY
Sbjct: 429 GKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITY 488
Query: 161 AVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
+ LI+G + +A EM+ G+ P+ TYTA+ A+ +++A L
Sbjct: 489 SSLIQGFC-----EQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLH 543
Query: 221 QQMKAKGFVPD 231
+M KG +PD
Sbjct: 544 NEMVEKGVLPD 554
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 89/183 (48%), Gaps = 8/183 (4%)
Query: 77 IFHKMRTEGLTNNAVKMFDALSKDGLTH---EALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
+ M+ +GL+ + V LS ++ EAL++ ++ +KG PD + ++++I+ +
Sbjct: 437 VLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFC 496
Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
+ KEA ++ ML G+ P+ +TY LI D L A + EMV KG+
Sbjct: 497 EQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGD-----LEKALQLHNEMVEKGV 551
Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINI 253
P+ TY+ + + + EA+ LL ++ + VP + + + F+ V+++
Sbjct: 552 LPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSL 611
Query: 254 LFG 256
+ G
Sbjct: 612 IKG 614
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 9/129 (6%)
Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
A +F ++ + P+V + +I + AG AL +F +M G PN TY LI
Sbjct: 189 AENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLI- 247
Query: 166 GLAAAADGNAKI--LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
DG K+ + D K L M KG+ PN +Y V R ++ E +L +M
Sbjct: 248 ------DGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEM 301
Query: 224 KAKGFVPDE 232
+G+ DE
Sbjct: 302 NRRGYSLDE 310
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 69/147 (46%), Gaps = 10/147 (6%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
+ +A +G +ALQL ++ +KG +PDVV ++ +I + +EA R+ +++
Sbjct: 526 LINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEE 585
Query: 153 VAPNAYTYAVLI--------KGLAAAADGNAK--ILGDAQKYLMEMVGKGMRPNAGTYTA 202
P+ TY LI K + + G ++ +A + M+GK +P+ Y
Sbjct: 586 SVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNI 645
Query: 203 VFEAFVRAQKVDEARGLLQQMKAKGFV 229
+ RA + +A L ++M GF+
Sbjct: 646 MIHGHCRAGDIRKAYTLYKEMVKSGFL 672
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 68/140 (48%), Gaps = 6/140 (4%)
Query: 103 THEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAV 162
T EA L+ ++ G PD +TA+I AY G ++AL++ M+ GV P+ TY+V
Sbjct: 501 TKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSV 560
Query: 163 LIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
LI GL + +A++ L+++ + P+ TY + E + L++
Sbjct: 561 LINGLNKQSRTR-----EAKRLLLKLFYEESVPSDVTYHTLIENCSNIE-FKSVVSLIKG 614
Query: 223 MKAKGFVPDEKAVKEALIDK 242
KG + + V E+++ K
Sbjct: 615 FCMKGMMTEADQVFESMLGK 634
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 58/143 (40%), Gaps = 5/143 (3%)
Query: 89 NAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRM 148
+ V + G+ EA Q+F + K H PD A+ +I + AG ++A ++ M
Sbjct: 607 SVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEM 666
Query: 149 LASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFV 208
+ SG + T L+K L N + ++ ++ A + E
Sbjct: 667 VKSGFLLHTVTVIALVKALHKEGKVN-----ELNSVIVHVLRSCELSEAEQAKVLVEINH 721
Query: 209 RAQKVDEARGLLQQMKAKGFVPD 231
R +D +L +M GF+P+
Sbjct: 722 REGNMDVVLDVLAEMAKDGFLPN 744
>sp|Q9SI78|PPR93_ARATH Pentatricopeptide repeat-containing protein At1g62720
OS=Arabidopsis thaliana GN=At1g62720 PE=2 SV=1
Length = 485
Score = 84.3 bits (207), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 83/166 (50%), Gaps = 24/166 (14%)
Query: 85 GLTNNAVKMFDALSKDGLTHEAL---QLFAQIKDKGH----------------MPDVVAH 125
GL N+AV++FD + +DG+ +A+ L A + G +P+V+
Sbjct: 188 GLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITF 247
Query: 126 TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185
TAVI+ + G+ EA++++ M V P+ +TY LI GL + +A++ L
Sbjct: 248 TAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGR-----VDEAKQML 302
Query: 186 MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
MV KG P+ TY + F ++++VDE L ++M +G V D
Sbjct: 303 DLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGD 348
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 71/139 (51%), Gaps = 5/139 (3%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
+ + + +A+ L +++++ G PDVV + +I+ G +A+ +F RM G
Sbjct: 145 LINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDG 204
Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
V +A TY L+ GL + + DA + + +MV + + PN T+TAV + FV+ K
Sbjct: 205 VRADAVTYNSLVAGLCCSGRWS-----DAARLMRDMVMRDIVPNVITFTAVIDVFVKEGK 259
Query: 213 VDEARGLLQQMKAKGFVPD 231
EA L ++M + PD
Sbjct: 260 FSEAMKLYEEMTRRCVDPD 278
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 79/189 (41%), Gaps = 36/189 (19%)
Query: 75 QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
+++ M T+G + V + + K E +LF ++ +G + D + + +I+
Sbjct: 299 KQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQG 358
Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA----------------------- 168
Y AG+ A +F RM + PN TY++L+ GL
Sbjct: 359 YFQAGRPDAAQEIFSRMDSR---PNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELD 415
Query: 169 -----AAADGNAKI--LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221
G KI + DA + KG++P+ +YT + F R ++ D++ L +
Sbjct: 416 ITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYR 475
Query: 222 QMKAKGFVP 230
+M+ G +P
Sbjct: 476 KMQEDGLLP 484
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 8/132 (6%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
+ + L G EA Q+ + KG +PDVV + +I + + + E ++F M G
Sbjct: 285 LINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRG 344
Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
+ + TY +I+G A +A AQ+ M RPN TY+ + +
Sbjct: 345 LVGDTITYNTIIQGYFQAGRPDA-----AQEIFSRM---DSRPNIRTYSILLYGLCMNWR 396
Query: 213 VDEARGLLQQMK 224
V++A L + M+
Sbjct: 397 VEKALVLFENMQ 408
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 66/151 (43%), Gaps = 12/151 (7%)
Query: 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
E + LF ++ +P +V + V+ A + + +F M G+ + Y+Y ++
Sbjct: 51 EEEIDLFCKMIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIV 110
Query: 164 IKGLAAAADG--NAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221
I L + ++G K+ G P+ T +++ F + +V +A L+
Sbjct: 111 INCLCRCSRFVIALSVVGKMMKF-------GYEPDVVTVSSLINGFCQGNRVFDAIDLVS 163
Query: 222 QMKAKGFVPDEKAVKEALIDKRGQGFRGVIN 252
+M+ GF PD + +ID G G++N
Sbjct: 164 KMEEMGFRPD-VVIYNTIID--GSCKIGLVN 191
>sp|Q8GYP6|PPR49_ARATH Pentatricopeptide repeat-containing protein At1g18900
OS=Arabidopsis thaliana GN=At1g18900 PE=1 SV=1
Length = 860
Score = 84.3 bits (207), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 84/162 (51%), Gaps = 8/162 (4%)
Query: 74 LQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
+ ++ +M +G N V ++ + + +EA+ +F Q+++ G PD V + +I+
Sbjct: 383 INKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTYCTLID 442
Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
+A AG A+ ++ RM A G++P+ +TY+V+I L G A L A K EMV
Sbjct: 443 IHAKAGFLDIAMDMYQRMQAGGLSPDTFTYSVIINCL-----GKAGHLPAAHKLFCEMVD 497
Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
+G PN TY + + +A+ A L + M+ GF PD+
Sbjct: 498 QGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDK 539
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 75/159 (47%), Gaps = 8/159 (5%)
Query: 75 QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
++F +M +G T N V M D +K AL+L+ +++ G PD V ++ V+E
Sbjct: 489 HKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEV 548
Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
G +EA VF M P+ Y +L+ A GN + A ++ M+
Sbjct: 549 LGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKA--GNVE---KAWQWYQAMLHA 603
Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
G+RPN T ++ F+R K+ EA LLQ M A G P
Sbjct: 604 GLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALGLRP 642
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
G + +TY ++ L G AK G K L EMV G +PN TY + ++ RA
Sbjct: 359 GFKHDGHTYTTMVGNL-----GRAKQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRAN 413
Query: 212 KVDEARGLLQQMKAKGFVPDEKAVKEALID 241
++EA + QM+ G PD + LID
Sbjct: 414 YLNEAMNVFNQMQEAGCKPD-RVTYCTLID 442
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 74/174 (42%), Gaps = 25/174 (14%)
Query: 53 LPPPYDPFKKVVDEEPT--------------DPRNLQ---EIFHKMRTEGLTNNAVK--- 92
LP + F ++VD+ T RN Q +++ M+ G + V
Sbjct: 485 LPAAHKLFCEMVDQGCTPNLVTYNIMMDLHAKARNYQNALKLYRDMQNAGFEPDKVTYSI 544
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
+ + L G EA +F +++ K +PD + +++ + AG ++A + + ML +G
Sbjct: 545 VMEVLGHCGYLEEAEAVFTEMQQKNWIPDEPVYGLLVDLWGKAGNVEKAWQWYQAMLHAG 604
Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEA 206
+ PN T L+ + +A + L M+ G+RP+ TYT +
Sbjct: 605 LRPNVPTCNSLLSTFL-----RVNKIAEAYELLQNMLALGLRPSLQTYTLLLSC 653
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 54/127 (42%), Gaps = 6/127 (4%)
Query: 106 ALQLFAQIKDK-GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
AL F +K + G D +T ++ A Q ++ M+ G PN TY LI
Sbjct: 347 ALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVTYNRLI 406
Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
G A L +A +M G +P+ TY + + +A +D A + Q+M+
Sbjct: 407 HSY-----GRANYLNEAMNVFNQMQEAGCKPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQ 461
Query: 225 AKGFVPD 231
A G PD
Sbjct: 462 AGGLSPD 468
Score = 38.5 bits (88), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
+ D K G +A Q + + G P+V +++ + + EA + MLA G
Sbjct: 580 LVDLWGKAGNVEKAWQWYQAMLHAGLRPNVPTCNSLLSTFLRVNKIAEAYELLQNMLALG 639
Query: 153 VAPNAYTYAVLIKGLAAAADGNAKI 177
+ P+ TY +L L+ DG +K+
Sbjct: 640 LRPSLQTYTLL---LSCCTDGRSKL 661
>sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580
OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1
Length = 763
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 70/139 (50%), Gaps = 5/139 (3%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
+ + L K G +A L + KG+ PD+ +I Y++ + + AL + ML +G
Sbjct: 432 LVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNG 491
Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
V P+ YTY L+ GL + D + MV KG PN T+ + E+ R +K
Sbjct: 492 VDPDVYTYNSLLNGLCKTSK-----FEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRK 546
Query: 213 VDEARGLLQQMKAKGFVPD 231
+DEA GLL++MK K PD
Sbjct: 547 LDEALGLLEEMKNKSVNPD 565
Score = 67.8 bits (164), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 82/169 (48%), Gaps = 9/169 (5%)
Query: 76 EIFHKMRTEGLT---NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
E+F KM G++ + K+ L K G E +L ++ +G +P++ + I+
Sbjct: 202 ELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGL 261
Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
G+ A+R+ ++ G P+ TY LI GL N+K +A+ YL +MV +G
Sbjct: 262 CQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCK----NSK-FQEAEVYLGKMVNEG 316
Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
+ P++ TY + + + V A ++ GFVPD+ + +LID
Sbjct: 317 LEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYR-SLID 364
Score = 67.4 bits (163), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 8/155 (5%)
Query: 80 KMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
KM EGL ++ + K G+ A ++ G +PD + ++I+ G
Sbjct: 311 KMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEG 370
Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196
+ AL +F L G+ PN Y LIKGL+ N ++ +A + EM KG+ P
Sbjct: 371 ETNRALALFNEALGKGIKPNVILYNTLIKGLS-----NQGMILEAAQLANEMSEKGLIPE 425
Query: 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
T+ + + V +A GL++ M +KG+ PD
Sbjct: 426 VQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPD 460
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 5/136 (3%)
Query: 96 ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
L K+ EA ++ ++G PD + +I Y G + A R+ + +G P
Sbjct: 295 GLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVP 354
Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
+ +TY LI GL + N A E +GKG++PN Y + + + E
Sbjct: 355 DQFTYRSLIDGLCHEGETNR-----ALALFNEALGKGIKPNVILYNTLIKGLSNQGMILE 409
Query: 216 ARGLLQQMKAKGFVPD 231
A L +M KG +P+
Sbjct: 410 AAQLANEMSEKGLIPE 425
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 74/167 (44%), Gaps = 12/167 (7%)
Query: 72 RNLQE---IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVV-A 124
R L E + +M+ + + +AV + D K+G A LF ++++ +
Sbjct: 545 RKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPT 604
Query: 125 HTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKY 184
+ +I A+ A ++F M+ + P+ YTY +++ G + N K+
Sbjct: 605 YNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNL-----GYKF 659
Query: 185 LMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
L+EM+ G P+ T V +V EA G++ +M KG VP+
Sbjct: 660 LLEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQKGLVPE 706
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 68/161 (42%), Gaps = 15/161 (9%)
Query: 74 LQEIFHKMR-------TEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
++E+ MR EG+ A+K + + G EA+ +F ++ P V ++
Sbjct: 59 MEEVLVDMRENVGNHMLEGVYVGAMKNY---GRKGKVQEAVNVFERMDFYDCEPTVFSYN 115
Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
A++ +G +A +V+MRM G+ P+ Y++ + +K + +A A + L
Sbjct: 116 AIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHA-----ALRLLN 170
Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
M +G N Y V F E L +M A G
Sbjct: 171 NMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASG 211
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/245 (20%), Positives = 89/245 (36%), Gaps = 42/245 (17%)
Query: 24 NTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKKVVDEEPTDPR--NLQEIFHKM 81
N VN + S +D K + +K P + F ++ T + N EI M
Sbjct: 430 NILVNGLCKMGCVSDADGLVKVMI-SKGYFPDIF-TFNILIHGYSTQLKMENALEILDVM 487
Query: 82 RTEGL-----TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
G+ T N+ + + L K + ++ + + +KG P++ ++E+
Sbjct: 488 LDNGVDPDVYTYNS--LLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYR 545
Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKI------------------- 177
+ EAL + M V P+A T+ LI G D +
Sbjct: 546 KLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTY 605
Query: 178 ------------LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
+ A+K EMV + + P+ TY + + F + V+ L +M
Sbjct: 606 NIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMME 665
Query: 226 KGFVP 230
GF+P
Sbjct: 666 NGFIP 670
>sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940
OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1
Length = 822
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/163 (32%), Positives = 83/163 (50%), Gaps = 8/163 (4%)
Query: 72 RNLQEIFHKMRTEGLTNN---AVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
R + + +MR++GL + + A +++GL EA + FA++K G+ P V + A+
Sbjct: 263 RKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNAL 322
Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
++ + AG EAL V M + ++ TY L+ AA A +A + M
Sbjct: 323 LQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELV-----AAYVRAGFSKEAAGVIEMM 377
Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
KG+ PNA TYT V +A+ +A K DEA L MK G VP+
Sbjct: 378 TKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPN 420
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 68/137 (49%), Gaps = 7/137 (5%)
Query: 96 ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
A + G + EA + + KG MP+ + +T VI+AY AG+ EAL++F M +G P
Sbjct: 360 AYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVP 419
Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
N TY ++ L + N I K L +M G PN T+ + A + +D+
Sbjct: 420 NTCTYNAVLSLLGKKSRSNEMI-----KMLCDMKSNGCSPNRATWNTML-ALCGNKGMDK 473
Query: 216 -ARGLLQQMKAKGFVPD 231
+ ++MK+ GF PD
Sbjct: 474 FVNRVFREMKSCGFEPD 490
Score = 70.9 bits (172), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 54/189 (28%), Positives = 81/189 (42%), Gaps = 12/189 (6%)
Query: 72 RNLQEIFHKMRTEG-----LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
R +E F ++++ G +T NA + K G+ EAL + ++++ D V +
Sbjct: 298 REAKEFFAELKSCGYEPGTVTYNA--LLQVFGKAGVYTEALSVLKEMEENSCPADSVTYN 355
Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
++ AY AG KEA V M GV PNA TY +I A G A +A K
Sbjct: 356 ELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVID-----AYGKAGKEDEALKLFY 410
Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
M G PN TY AV + + +E +L MK+ G P+ L +G
Sbjct: 411 SMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKG 470
Query: 247 FRGVINILF 255
+N +F
Sbjct: 471 MDKFVNRVF 479
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 74/163 (45%), Gaps = 8/163 (4%)
Query: 77 IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
I +R +GL+ + V + D + G +A ++ ++ PD+V++ VI+ +
Sbjct: 653 ILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFC 712
Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
G +EA+R+ M G+ P +TY + G A + + + + M
Sbjct: 713 RRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMG-----MFAEIEDVIECMAKNDC 767
Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK 236
RPN T+ V + + RA K EA + ++K D+++++
Sbjct: 768 RPNELTFKMVVDGYCRAGKYSEAMDFVSKIKTFDPCFDDQSIQ 810
Score = 61.2 bits (147), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 8/155 (5%)
Query: 77 IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
+ M +G+ NA+ + DA K G EAL+LF +K+ G +P+ + AV+
Sbjct: 373 VIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLG 432
Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
+ E +++ M ++G +PN T+ ++ A GN + + EM G
Sbjct: 433 KKSRSNEMIKMLCDMKSNGCSPNRATWNTML-----ALCGNKGMDKFVNRVFREMKSCGF 487
Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
P+ T+ + A+ R +A + +M GF
Sbjct: 488 EPDRDTFNTLISAYGRCGSEVDASKMYGEMTRAGF 522
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 4/125 (3%)
Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
A +L +I + ++ DV A+T ++ AY+ G+ ++A+ +F RM G +P TY V++
Sbjct: 194 AAKLLDKIPLQEYLLDVRAYTTILHAYSRTGKYEKAIDLFERMKEMGPSPTLVTYNVILD 253
Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
KILG L EM KG++ + T + V A R + EA+ ++K+
Sbjct: 254 VFGKMGRSWRKILG----VLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKS 309
Query: 226 KGFVP 230
G+ P
Sbjct: 310 CGYEP 314
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/165 (20%), Positives = 73/165 (44%), Gaps = 11/165 (6%)
Query: 87 TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFM 146
T NA + +AL++ G + + +K KG P +++ +++ YA G R+
Sbjct: 528 TYNA--LLNALARKGDWRSGENVISDMKSKGFKPTETSYSLMLQCYAKGGNYLGIERIEN 585
Query: 147 RMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEA 206
R+ + P+ L+ A+ + L +++ G +P+ + ++
Sbjct: 586 RIKEGQIFPSWMLLRTLL-----LANFKCRALAGSERAFTLFKKHGYKPDMVIFNSMLSI 640
Query: 207 FVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID---KRGQGFR 248
F R D+A G+L+ ++ G PD +L+D +RG+ ++
Sbjct: 641 FTRNNMYDQAEGILESIREDGLSPD-LVTYNSLMDMYVRRGECWK 684
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 54/133 (40%), Gaps = 8/133 (6%)
Query: 81 MRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ 137
M++ G + N M G+ ++F ++K G PD +I AY G
Sbjct: 447 MKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFREMKSCGFEPDRDTFNTLISAYGRCGS 506
Query: 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA 197
+A +++ M +G TY L+ LA D + + + +M KG +P
Sbjct: 507 EVDASKMYGEMTRAGFNACVTTYNALLNALARKGDWRS-----GENVISDMKSKGFKPTE 561
Query: 198 GTYTAVFEAFVRA 210
+Y+ + + + +
Sbjct: 562 TSYSLMLQCYAKG 574
Score = 40.0 bits (92), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 15/126 (11%)
Query: 110 FAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI----- 164
F K G+ PD+V +++ + +A + + G++P+ TY L+
Sbjct: 619 FTLFKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVR 678
Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
+G A+ K L +Q ++P+ +Y V + F R + EA +L +M
Sbjct: 679 RGECWKAEEILKTLEKSQ----------LKPDLVSYNTVIKGFCRRGLMQEAVRMLSEMT 728
Query: 225 AKGFVP 230
+G P
Sbjct: 729 ERGIRP 734
>sp|Q9SH60|PP103_ARATH Pentatricopeptide repeat-containing protein At1g64100
OS=Arabidopsis thaliana GN=At1g64100 PE=2 SV=2
Length = 666
Score = 83.2 bits (204), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 92/184 (50%), Gaps = 10/184 (5%)
Query: 53 LPPPYDPFKKVVDEEPTDPRNLQE--IFHKMRTEGLTNNAVK---MFDALSKDGLTHEAL 107
L P F +++ + R L+ + +KM +GL + V + + + K G T AL
Sbjct: 222 LTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSAL 281
Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
L +++++ PDVV ++A+I+ G +A +F ML G+APN +TY +I G
Sbjct: 282 NLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGF 341
Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
+ + DAQ+ L +M+ + + P+ T+ A+ A V+ K+ EA L +M +
Sbjct: 342 CSFGRWS-----DAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRC 396
Query: 228 FVPD 231
PD
Sbjct: 397 IFPD 400
Score = 67.8 bits (164), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 75/165 (45%), Gaps = 8/165 (4%)
Query: 75 QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
Q++F +M + G+ + + + ++ EAL+LF I+ D VA+ +I
Sbjct: 487 QDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHG 546
Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
+ EA +F + GV P+ TY V+I G + + DA +M
Sbjct: 547 MCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKS-----AISDANVLFHKMKDN 601
Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK 236
G P+ TY + ++A ++D++ L+ +M++ GF D +K
Sbjct: 602 GHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIK 646
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 89/225 (39%), Gaps = 36/225 (16%)
Query: 43 TKKYVNTKSKLP-----PPYDPFKKVVDEEPTDPR--NLQEIFHKMRTEGLTNNAVK--- 92
TK +N SK+ P + ++D D + Q +F +M +G+ N
Sbjct: 277 TKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNC 336
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
M D G +A +L + ++ PDV+ A+I A G+ EA ++ ML
Sbjct: 337 MIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRC 396
Query: 153 VAPNAYTYAVLIKG---------------LAAAAD-----------GNAKILGDAQKYLM 186
+ P+ TY +I G L A+ D AK + + + L
Sbjct: 397 IFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLR 456
Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
E+ +G+ N TY + F ++ A+ L Q+M + G PD
Sbjct: 457 EISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPD 501
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 11/119 (9%)
Query: 112 QIKDKGHM------PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
+ D HM PDVV +I+ Y A + E +++ + G+ N TY LI
Sbjct: 416 RFDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIH 475
Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
G + NA AQ EM+ G+ P+ T + F +K++EA L + ++
Sbjct: 476 GFCEVDNLNA-----AQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQ 529
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/160 (21%), Positives = 61/160 (38%), Gaps = 21/160 (13%)
Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
A LF ++ G PD + ++ + + +EAL +F + S + + Y ++I
Sbjct: 486 AQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIH 545
Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
G+ + + +A + G+ P+ TY + F + +A L +MK
Sbjct: 546 GMCKGSK-----VDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKD 600
Query: 226 KGFVPDEK--------AVKEALIDK--------RGQGFRG 249
G PD +K IDK R GF G
Sbjct: 601 NGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSG 640
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 62/152 (40%), Gaps = 21/152 (13%)
Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG------------- 152
+L F ++ G PDVV ++ + EAL +F M+ +G
Sbjct: 160 SLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLEAVALFDQMVE 219
Query: 153 --VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
+ P T+ LI GL ++L +A + +MVGKG+ + TY + +
Sbjct: 220 IGLTPVVITFNTLINGLCL----EGRVL-EAAALVNKMVGKGLHIDVVTYGTIVNGMCKM 274
Query: 211 QKVDEARGLLQQMKAKGFVPDEKAVKEALIDK 242
A LL +M+ PD + A+ID+
Sbjct: 275 GDTKSALNLLSKMEETHIKPD-VVIYSAIIDR 305
>sp|Q9FNL2|PP418_ARATH Pentatricopeptide repeat-containing protein At5g46100
OS=Arabidopsis thaliana GN=At5g46100 PE=2 SV=1
Length = 472
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 70/139 (50%), Gaps = 5/139 (3%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
+ L + G EA +LF ++ +K P VV +T++I + EA+R M + G
Sbjct: 198 LISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKG 257
Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
+ PN +TY+ L+ GL DG + A + M+ +G RPN TYT + + QK
Sbjct: 258 IEPNVFTYSSLMDGL--CKDGRSL---QAMELFEMMMARGCRPNMVTYTTLITGLCKEQK 312
Query: 213 VDEARGLLQQMKAKGFVPD 231
+ EA LL +M +G PD
Sbjct: 313 IQEAVELLDRMNLQGLKPD 331
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 78/164 (47%), Gaps = 10/164 (6%)
Query: 73 NLQEIFHK-MRTEGLTNNAVKM---FDALSK-DGLTHEALQLFAQIKDKGHMPDVVAHTA 127
NL F+K MR GL + AL + DG L++F ++ +G PD +
Sbjct: 138 NLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYGT 197
Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
+I G+ EA ++F M+ AP TY LI GL +K + +A +YL E
Sbjct: 198 LISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCG-----SKNVDEAMRYLEE 252
Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
M KG+ PN TY+++ + + + +A L + M A+G P+
Sbjct: 253 MKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPN 296
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 74/155 (47%), Gaps = 15/155 (9%)
Query: 78 FHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
+M+++G+ N + D L KDG + +A++LF + +G P++V +T +I
Sbjct: 250 LEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCK 309
Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
+ +EA+ + RM G+ P+A Y +I G A + +A +L EM+ G+
Sbjct: 310 EQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISK-----FREAANFLDEMILGGIT 364
Query: 195 PNAGTYTAVFEAFVRAQKVDE-ARGLLQQMKAKGF 228
PN T+ + + +E RGL ++ F
Sbjct: 365 PNRLTWN------IHVKTSNEVVRGLCANYPSRAF 393
Score = 54.7 bits (130), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 90/214 (42%), Gaps = 19/214 (8%)
Query: 36 SSSSDQPTKKYVNTKSK-LPPPYDPFKKVVDEEPTDPRNLQ--EIFHKMRTEGLTNNAVK 92
S + D+ + KSK + P + ++D D R+LQ E+F M G N V
Sbjct: 240 SKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVT 299
Query: 93 ---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRML 149
+ L K+ EA++L ++ +G PD + VI + + + +EA M+
Sbjct: 300 YTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMI 359
Query: 150 ASGVAPNAYTYAV-------LIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTA 202
G+ PN T+ + +++GL A A L YL M +G+ T +
Sbjct: 360 LGGITPNRLTWNIHVKTSNEVVRGLCANYPSRAFTL-----YL-SMRSRGISVEVETLES 413
Query: 203 VFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK 236
+ + + + +A L+ ++ G +P + K
Sbjct: 414 LVKCLCKKGEFQKAVQLVDEIVTDGCIPSKGTWK 447
>sp|Q9FLL3|PP412_ARATH Pentatricopeptide repeat-containing protein At5g41170,
mitochondrial OS=Arabidopsis thaliana GN=At5g41170 PE=2
SV=1
Length = 527
Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 85/183 (46%), Gaps = 10/183 (5%)
Query: 49 TKSKLPPPYDPFKKVVDEEPTDPRNL--QEIFHKMRTEGLTNNA---VKMFDALSKDGLT 103
TK K+ P F ++D + + L +E++++M + N + + +G
Sbjct: 239 TKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCV 298
Query: 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
EA Q+F ++ KG PDVVA+T++I + + +A+++F M G+ N TY L
Sbjct: 299 DEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTL 358
Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
I+G N AQ+ MV +G+ PN TY + KV +A + + M
Sbjct: 359 IQGFGQVGKPNV-----AQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDM 413
Query: 224 KAK 226
+ +
Sbjct: 414 QKR 416
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 72/139 (51%), Gaps = 5/139 (3%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
+ D+L K+G + AL LF Q+++ G PDVV +T+++ ++G+ ++A + M
Sbjct: 183 IIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRK 242
Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
+ P+ T+ LI K L DA++ EM+ + PN TYT++ F
Sbjct: 243 IKPDVITFNALIDAFVK----EGKFL-DAEELYNEMIRMSIAPNIFTYTSLINGFCMEGC 297
Query: 213 VDEARGLLQQMKAKGFVPD 231
VDEAR + M+ KG PD
Sbjct: 298 VDEARQMFYLMETKGCFPD 316
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 73/152 (48%), Gaps = 7/152 (4%)
Query: 80 KMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGK 139
K++ + +T NA + DA K+G +A +L+ ++ P++ +T++I + G
Sbjct: 242 KIKPDVITFNA--LIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVD 299
Query: 140 EALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGT 199
EA ++F M G P+ Y LI G K + DA K EM KG+ N T
Sbjct: 300 EARQMFYLMETKGCFPDVVAYTSLINGFCKC-----KKVDDAMKIFYEMSQKGLTGNTIT 354
Query: 200 YTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
YT + + F + K + A+ + M ++G P+
Sbjct: 355 YTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPN 386
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 77/188 (40%), Gaps = 36/188 (19%)
Query: 76 EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
+IF++M +GLT N + + + G + A ++F+ + +G P++ + ++
Sbjct: 338 KIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCL 397
Query: 133 ASAGQGKEALRVFMRML---ASGVAPNAYTYAVLIKGLA--------------------- 168
G+ K+AL +F M GVAPN +TY VL+ GL
Sbjct: 398 CYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMD 457
Query: 169 -------AAADGNAKI--LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGL 219
G K + +A + KG++PN TYT + R EA L
Sbjct: 458 IGIITYTIIIQGMCKAGKVKNAVNLFCSLPSKGVKPNVVTYTTMISGLFREGLKHEAHVL 517
Query: 220 LQQMKAKG 227
++MK G
Sbjct: 518 FRKMKEDG 525
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 94/236 (39%), Gaps = 23/236 (9%)
Query: 6 ILRWLLHSPSPKRSLRITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKKVVD 65
ILR LHS +L + V + R L S D K +N +K+ F V++
Sbjct: 43 ILRNGLHSLQFNEALDLFTHMVES---RPLPSIID--FTKLLNVIAKMKK----FDVVIN 93
Query: 66 EEPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAH 125
D + + H + T L + + + + A ++ G PD+V
Sbjct: 94 --LCDHLQIMGVSHDLYTCNL------LMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTF 145
Query: 126 TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185
T++I + + +EA+ + +M+ G+ P+ Y +I L N A
Sbjct: 146 TSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNY-----ALSLF 200
Query: 186 MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
+M G+RP+ YT++ + + +A LL+ M + PD ALID
Sbjct: 201 DQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITF-NALID 255
Score = 35.0 bits (79), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%)
Query: 96 ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
+ K G A+ LF + KG P+VV +T +I G EA +F +M GV+
Sbjct: 469 GMCKAGKVKNAVNLFCSLPSKGVKPNVVTYTTMISGLFREGLKHEAHVLFRKMKEDGVS 527
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 82/158 (51%), Gaps = 8/158 (5%)
Query: 77 IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
+F++M +G+ + V + L DG + ++ ++ + +PDVV +A+I+ +
Sbjct: 267 LFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFV 326
Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
G+ EA ++ M+ G+AP+ TY LI G L +A + MV KG
Sbjct: 327 KEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFC-----KENCLHEANQMFDLMVSKGC 381
Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
P+ TY+ + ++ +A++VD+ L +++ +KG +P+
Sbjct: 382 EPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPN 419
Score = 81.6 bits (200), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 81/153 (52%), Gaps = 8/153 (5%)
Query: 75 QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
+E++++M T G+ + + + D K+ HEA Q+F + KG PD+V ++ +I +
Sbjct: 335 KELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINS 394
Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
Y A + + +R+F + + G+ PN TY L+ G + NA A++ EMV +
Sbjct: 395 YCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNA-----AKELFQEMVSR 449
Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
G+ P+ TY + + ++++A + ++M+
Sbjct: 450 GVPPSVVTYGILLDGLCDNGELNKALEIFEKMQ 482
Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 71/138 (51%), Gaps = 5/138 (3%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
+ D K+G EA +L+ ++ +G PD + + ++I+ + EA ++F M++ G
Sbjct: 321 LIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKG 380
Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
P+ TY++LI AK + D + E+ KG+ PN TY + F ++ K
Sbjct: 381 CEPDIVTYSILINSYC-----KAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGK 435
Query: 213 VDEARGLLQQMKAKGFVP 230
++ A+ L Q+M ++G P
Sbjct: 436 LNAAKELFQEMVSRGVPP 453
Score = 65.1 bits (157), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 77/184 (41%), Gaps = 41/184 (22%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPD------------------------------- 121
+ + L G EAL L ++ + G PD
Sbjct: 181 LINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERN 240
Query: 122 ----VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKI 177
VV ++ VI++ G +AL +F M G+ + TY+ LI GL DG
Sbjct: 241 IKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGL--CNDGKWD- 297
Query: 178 LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKE 237
D K L EM+G+ + P+ T++A+ + FV+ K+ EA+ L +M +G PD
Sbjct: 298 --DGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPD-TITYN 354
Query: 238 ALID 241
+LID
Sbjct: 355 SLID 358
Score = 64.7 bits (156), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 74/159 (46%), Gaps = 8/159 (5%)
Query: 77 IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
+F ++ ++GL N + + + G + A +LF ++ +G P VV + +++
Sbjct: 407 LFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLC 466
Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
G+ +AL +F +M S + Y ++I G+ NA + DA + KG+
Sbjct: 467 DNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMC-----NASKVDDAWSLFCSLSDKGV 521
Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
+P+ TY + + + EA L ++MK G PD+
Sbjct: 522 KPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDD 560
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 80/175 (45%), Gaps = 11/175 (6%)
Query: 75 QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
+E+F +M + G+ + V + D L +G ++AL++F +++ + + +I
Sbjct: 440 KELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHG 499
Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
+A + +A +F + GV P+ TY V+I GL L +A +M
Sbjct: 500 MCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGS-----LSEADMLFRKMKED 554
Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK---EALIDKR 243
G P+ TY + A + + + L+++MK GF D +K + L D+R
Sbjct: 555 GCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVIDMLSDRR 609
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 64/139 (46%), Gaps = 5/139 (3%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
+ + +G EA+ L ++ + PD+V + +I G+ EAL + RM+ G
Sbjct: 146 LVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYG 205
Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
P+ TY ++ L + GN+ + D + + E + ++ + Y+ V ++ +
Sbjct: 206 FQPDEVTYGPVLNRLCKS--GNSALALDLFRKMEE---RNIKASVVQYSIVIDSLCKDGS 260
Query: 213 VDEARGLLQQMKAKGFVPD 231
D+A L +M+ KG D
Sbjct: 261 FDDALSLFNEMEMKGIKAD 279
Score = 40.4 bits (93), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 5/112 (4%)
Query: 121 DVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGD 180
D+ T +I Y + A V R G P+ T++ L+ G + +
Sbjct: 104 DMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGR-----VSE 158
Query: 181 AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
A + MV RP+ T + + +V EA L+ +M GF PDE
Sbjct: 159 AVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDE 210
Score = 39.3 bits (90), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 48/110 (43%), Gaps = 5/110 (4%)
Query: 117 GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK 176
G+ PD + + ++ + G+ EA+ + RM+ P+ T + LI GL
Sbjct: 135 GYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGR---- 190
Query: 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK 226
+ +A + MV G +P+ TY V ++ A L ++M+ +
Sbjct: 191 -VSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEER 239
>sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990,
mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2
SV=1
Length = 974
Score = 82.0 bits (201), Expect = 4e-15, Method: Composition-based stats.
Identities = 44/157 (28%), Positives = 82/157 (52%), Gaps = 8/157 (5%)
Query: 78 FHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
+ M +G+ +A + + L K+ +A ++F +++ KG PDV ++ +I ++
Sbjct: 580 YRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSK 639
Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
G ++A +F M+ G+ PN Y +L+ G + + + A++ L EM KG+
Sbjct: 640 LGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGE-----IEKAKELLDEMSVKGLH 694
Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
PNA TY + + + ++ + EA L +MK KG VPD
Sbjct: 695 PNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPD 731
Score = 78.2 bits (191), Expect = 6e-14, Method: Composition-based stats.
Identities = 43/159 (27%), Positives = 80/159 (50%), Gaps = 10/159 (6%)
Query: 77 IFHKMRTEGLTNNAVKMFD----ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
+ H+M + G+ N M+D +SK+G+ +A LF + G +P A+ ++IE Y
Sbjct: 334 LVHEMVSHGI-NIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGY 392
Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
++ + + M + + YTY ++KG+ ++ D L A + EM+ G
Sbjct: 393 CREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGD-----LDGAYNIVKEMIASG 447
Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
RPN YT + + F++ + +A +L++MK +G PD
Sbjct: 448 CRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPD 486
Score = 73.9 bits (180), Expect = 1e-12, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 70/127 (55%), Gaps = 5/127 (3%)
Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
A + ++ G P+VV +T +I+ + + +A+RV M G+AP+ + Y LI
Sbjct: 436 AYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLII 495
Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
GL+ AK + +A+ +L+EMV G++PNA TY A ++ A + A +++M+
Sbjct: 496 GLS-----KAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRE 550
Query: 226 KGFVPDE 232
G +P++
Sbjct: 551 CGVLPNK 557
Score = 70.1 bits (170), Expect = 1e-11, Method: Composition-based stats.
Identities = 44/158 (27%), Positives = 75/158 (47%), Gaps = 14/158 (8%)
Query: 80 KMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
+MR G+ N V + + K G EA + + D+G + D +T ++
Sbjct: 547 EMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKND 606
Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQK---YLMEMVGKGM 193
+ +A +F M G+AP+ ++Y VLI G + LG+ QK EMV +G+
Sbjct: 607 KVDDAEEIFREMRGKGIAPDVFSYGVLINGFSK--------LGNMQKASSIFDEMVEEGL 658
Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
PN Y + F R+ ++++A+ LL +M KG P+
Sbjct: 659 TPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPN 696
Score = 67.4 bits (163), Expect = 1e-10, Method: Composition-based stats.
Identities = 40/162 (24%), Positives = 70/162 (43%), Gaps = 40/162 (24%)
Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
+A+++ ++K++G PD+ + ++I + A + EA + M+ +G+ PNA+TY I
Sbjct: 470 DAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFI 529
Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPN---------------------------- 196
G A++ A KY+ EM G+ PN
Sbjct: 530 SGYIEASE-----FASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMV 584
Query: 197 -------AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
A TYT + + KVD+A + ++M+ KG PD
Sbjct: 585 DQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPD 626
Score = 67.0 bits (162), Expect = 1e-10, Method: Composition-based stats.
Identities = 40/148 (27%), Positives = 72/148 (48%), Gaps = 2/148 (1%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
M D L K+G A +LF Q+++ MP V+ +T+++ Y G+ E VF +A+G
Sbjct: 811 MIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAG 870
Query: 153 VAPNAYTYAVLIKG-LAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
+ P+ Y+V+I L A +L D Q + V G + + T A+ F +
Sbjct: 871 IEPDHIMYSVIINAFLKEGMTTKALVLVD-QMFAKNAVDDGCKLSISTCRALLSGFAKVG 929
Query: 212 KVDEARGLLQQMKAKGFVPDEKAVKEAL 239
+++ A +++ M ++PD V E +
Sbjct: 930 EMEVAEKVMENMVRLQYIPDSATVIELI 957
Score = 52.0 bits (123), Expect = 4e-06, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Query: 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTY 200
AL++ M+ G+ P YTY VLI GL K L DA+ L+EM G+ + TY
Sbjct: 261 ALKLKESMICKGLVPLKYTYDVLIDGLC-----KIKRLEDAKSLLVEMDSLGVSLDNHTY 315
Query: 201 TAVFEAFVRAQKVDEARGLLQQMKAKG 227
+ + + ++ + D A+GL+ +M + G
Sbjct: 316 SLLIDGLLKGRNADAAKGLVHEMVSHG 342
Score = 48.5 bits (114), Expect = 4e-05, Method: Composition-based stats.
Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 13/163 (7%)
Query: 75 QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
+E+ +M +GL NAV + D K G EA +LF ++K KG +PD +T +++
Sbjct: 682 KELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDG 741
Query: 132 YASAGQGKEALRVF---MRMLASGVAP-NAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
+ A+ +F + AS AP NA V G + ++L +
Sbjct: 742 CCRLNDVERAITIFGTNKKGCASSTAPFNALINWVFKFG---KTELKTEVLNRLMDGSFD 798
Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
GK PN TY + + + ++ A+ L QM+ +P
Sbjct: 799 RFGK---PNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMP 838
Score = 43.1 bits (100), Expect = 0.002, Method: Composition-based stats.
Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 5/129 (3%)
Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
AL+L + KG +P + +I+ + ++A + + M + GV+ + +TY++LI
Sbjct: 261 ALKLKESMICKGLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLID 320
Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
GL + +A A+ + EMV G+ Y + +++A+ L M A
Sbjct: 321 GLLKGRNADA-----AKGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIA 375
Query: 226 KGFVPDEKA 234
G +P +A
Sbjct: 376 SGLIPQAQA 384
>sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860
OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1
Length = 819
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 87/165 (52%), Gaps = 9/165 (5%)
Query: 71 PRN-LQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
P N + + KM+++G+ +A + + L EA Q+F ++K G D V +
Sbjct: 259 PWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYN 318
Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
A+++ Y + + KEA++V M+ +G +P+ TY LI A A DG +L +A +
Sbjct: 319 ALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLIS--AYARDG---MLDEAMELKN 373
Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
+M KG +P+ TYT + F RA KV+ A + ++M+ G P+
Sbjct: 374 QMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPN 418
Score = 77.4 bits (189), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 81/166 (48%), Gaps = 8/166 (4%)
Query: 71 PRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
P+ ++ ++M G + + V + A ++DG+ EA++L Q+ +KG PDV +T
Sbjct: 330 PKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTT 389
Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
++ + AG+ + A+ +F M +G PN T+ IK GN + K E
Sbjct: 390 LLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIKMY-----GNRGKFTEMMKIFDE 444
Query: 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK 233
+ G+ P+ T+ + F + E G+ ++MK GFVP+ +
Sbjct: 445 INVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERE 490
Score = 75.1 bits (183), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 79/164 (48%), Gaps = 6/164 (3%)
Query: 86 LTNNAVKMF-DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRV 144
L N+ V + L K+G A +F +++ G DV ++T++I A+A++G+ +EA+ V
Sbjct: 171 LDNSVVAIIISMLGKEGRVSSAANMFNGLQEDGFSLDVYSYTSLISAFANSGRYREAVNV 230
Query: 145 FMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVF 204
F +M G P TY V++ KI +K M G+ P+A TY +
Sbjct: 231 FKKMEEDGCKPTLITYNVILNVFGKMGTPWNKITSLVEK----MKSDGIAPDAYTYNTLI 286
Query: 205 EAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFR 248
R EA + ++MKA GF D K AL+D G+ R
Sbjct: 287 TCCKRGSLHQEAAQVFEEMKAAGFSYD-KVTYNALLDVYGKSHR 329
Score = 67.8 bits (164), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 71/139 (51%), Gaps = 9/139 (6%)
Query: 87 TNNAVKMFDALSKD-GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVF 145
T N++ + S D G + E L+ +I KG PD++++ VI AY + ++A R+F
Sbjct: 666 TYNSLMYMHSRSADFGKSEEILR---EILAKGIKPDIISYNTVIYAYCRNTRMRDASRIF 722
Query: 146 MRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFE 205
M SG+ P+ TY I AA + + +A + M+ G RPN TY ++ +
Sbjct: 723 SEMRNSGIVPDVITYNTFIGSYAADS-----MFEEAIGVVRYMIKHGCRPNQNTYNSIVD 777
Query: 206 AFVRAQKVDEARGLLQQMK 224
+ + + DEA+ ++ ++
Sbjct: 778 GYCKLNRKDEAKLFVEDLR 796
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 68/135 (50%), Gaps = 5/135 (3%)
Query: 97 LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
SK L EA + F+++K++G PD+ +++ Y +A V M G P+
Sbjct: 604 CSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTPS 663
Query: 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
TY L+ + +AD G +++ L E++ KG++P+ +Y V A+ R ++ +A
Sbjct: 664 MATYNSLMYMHSRSAD-----FGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDA 718
Query: 217 RGLLQQMKAKGFVPD 231
+ +M+ G VPD
Sbjct: 719 SRIFSEMRNSGIVPD 733
Score = 65.1 bits (157), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 75/153 (49%), Gaps = 8/153 (5%)
Query: 74 LQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
+ +IF ++ GL+ + V + ++G+ E +F ++K G +P+ +I
Sbjct: 438 MMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVPERETFNTLIS 497
Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
AY+ G ++A+ V+ RML +GV P+ TY ++ LA + ++K L EM
Sbjct: 498 AYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGG-----MWEQSEKVLAEMED 552
Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
+PN TY ++ A+ +++ L +++
Sbjct: 553 GRCKPNELTYCSLLHAYANGKEIGLMHSLAEEV 585
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 64/160 (40%), Gaps = 10/160 (6%)
Query: 77 IFHKMRTEGLTNNAVKMFDALSK----DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
IF +MR G N + F+A K G E +++F +I G PD+V ++ +
Sbjct: 406 IFEEMRNAGCKPN-ICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVF 464
Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
G E VF M +G P T+ LI + A M+ G
Sbjct: 465 GQNGMDSEVSGVFKEMKRAGFVPERETFNTLISAYSRCGS-----FEQAMTVYRRMLDAG 519
Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
+ P+ TY V A R +++ +L +M+ P+E
Sbjct: 520 VTPDLSTYNTVLAALARGGMWEQSEKVLAEMEDGRCKPNE 559
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/120 (20%), Positives = 56/120 (46%), Gaps = 5/120 (4%)
Query: 113 IKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172
+K++G P + + +++ ++ + ++ + +LA G+ P+ +Y +I
Sbjct: 655 MKERGFTPSMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCR--- 711
Query: 173 GNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
N + + DA + EM G+ P+ TY ++ +EA G+++ M G P++
Sbjct: 712 -NTR-MRDASRIFSEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQ 769
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 81.6 bits (200), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 81/159 (50%), Gaps = 8/159 (5%)
Query: 76 EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
E+F +MR++G + + D+L G EAL + Q++ G V+ + +I+ +
Sbjct: 421 ELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGF 480
Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
A + +EA +F M GV+ N+ TY LI GL ++ + DA + + +M+ +G
Sbjct: 481 CKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLC-----KSRRVEDAAQLMDQMIMEG 535
Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
+P+ TY ++ F R + +A ++Q M + G PD
Sbjct: 536 QKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPD 574
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 84/184 (45%), Gaps = 15/184 (8%)
Query: 72 RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
R +EIF +M G++ N+V + D L K +A QL Q+ +G PD + ++
Sbjct: 487 REAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSL 546
Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
+ + G K+A + M ++G P+ TY LI GL A G ++ A K L +
Sbjct: 547 LTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKA--GRVEV---ASKLLRSI 601
Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFR 248
KG+ Y V + R +K EA L ++M + P + AV ++ FR
Sbjct: 602 QMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPD-AVSYRIV------FR 654
Query: 249 GVIN 252
G+ N
Sbjct: 655 GLCN 658
Score = 68.2 bits (165), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 63/137 (45%), Gaps = 6/137 (4%)
Query: 96 ALSKDGLTHEALQLFAQIKDK-GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
K+G +AL ++ ++ G PD ++ AG K A+ + ML G
Sbjct: 268 GFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYD 327
Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
P+ YTY +I GL + + +A + L +M+ + PN TY + + +V+
Sbjct: 328 PDVYTYNSVISGLCKLGE-----VKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVE 382
Query: 215 EARGLLQQMKAKGFVPD 231
EA L + + +KG +PD
Sbjct: 383 EATELARVLTSKGILPD 399
Score = 66.6 bits (161), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 72/169 (42%), Gaps = 9/169 (5%)
Query: 76 EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
E+ +M T + N V + L K+ EA +L + KG +PDV ++I+
Sbjct: 351 EVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGL 410
Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
+ A+ +F M + G P+ +TY +LI L + L +A L +M G
Sbjct: 411 CLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGK-----LDEALNMLKQMELSG 465
Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
+ TY + + F +A K EA + +M+ G V LID
Sbjct: 466 CARSVITYNTLIDGFCKANKTREAEEIFDEMEVHG-VSRNSVTYNTLID 513
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 5/140 (3%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
+ + L K G A+++ + +G+ PDV + +VI G+ KEA+ V +M+
Sbjct: 301 LVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRD 360
Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
+PN TY LI L + +A + + KG+ P+ T+ ++ + +
Sbjct: 361 CSPNTVTYNTLISTLCKENQ-----VEEATELARVLTSKGILPDVCTFNSLIQGLCLTRN 415
Query: 213 VDEARGLLQQMKAKGFVPDE 232
A L ++M++KG PDE
Sbjct: 416 HRVAMELFEEMRSKGCEPDE 435
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 6/108 (5%)
Query: 128 VIEAYASAGQGKEALRVFMRMLAS-GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
+IE+YA E L V M+ G+ P+ + Y ++ L DGN+ L + M
Sbjct: 124 LIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLV---DGNSLKLVEISHAKM 180
Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
+ G++P+ T+ + +A RA ++ A +L+ M + G VPDEK
Sbjct: 181 SV--WGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKT 226
Score = 44.7 bits (104), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 12/164 (7%)
Query: 74 LQEIFH-KMRTEGLTNNAVKMFD----ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
L EI H KM G+ + V F+ AL + A+ + + G +PD T V
Sbjct: 172 LVEISHAKMSVWGIKPD-VSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTV 230
Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
++ Y G ALR+ +M+ G + + + V++ G +G + DA ++ EM
Sbjct: 231 MQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGF--CKEGRVE---DALNFIQEM 285
Query: 189 VGK-GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
+ G P+ T+ + +A V A ++ M +G+ PD
Sbjct: 286 SNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPD 329
>sp|Q9SSF9|PP123_ARATH Pentatricopeptide repeat-containing protein At1g74750
OS=Arabidopsis thaliana GN=At1g74750 PE=2 SV=1
Length = 855
Score = 81.6 bits (200), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 84/162 (51%), Gaps = 8/162 (4%)
Query: 74 LQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
+ ++ +M +G N V ++ + + EA+ +F Q+++ G PD V + +I+
Sbjct: 378 INKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLKEAMNVFNQMQEAGCEPDRVTYCTLID 437
Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
+A AG A+ ++ RM +G++P+ +TY+V+I L G A L A + EMVG
Sbjct: 438 IHAKAGFLDIAMDMYQRMQEAGLSPDTFTYSVIINCL-----GKAGHLPAAHRLFCEMVG 492
Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
+G PN T+ + +A+ + A L + M+ GF PD+
Sbjct: 493 QGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDK 534
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 74/159 (46%), Gaps = 8/159 (5%)
Query: 75 QEIFHKMRTEGLTNNAV--KMFDALSKDGLTHE-ALQLFAQIKDKGHMPDVVAHTAVIEA 131
+F +M +G T N V + AL +E AL+L+ +++ G PD V ++ V+E
Sbjct: 484 HRLFCEMVGQGCTPNLVTFNIMIALHAKARNYETALKLYRDMQNAGFQPDKVTYSIVMEV 543
Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
G +EA VF M P+ Y +L+ A + + A ++ M+
Sbjct: 544 LGHCGFLEEAEGVFAEMQRKNWVPDEPVYGLLVDLWGKAGN-----VDKAWQWYQAMLQA 598
Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
G+RPN T ++ F+R ++ EA LLQ M A G P
Sbjct: 599 GLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLALGLHP 637
Score = 50.8 bits (120), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
G + +TY ++ L G AK G+ K L EMV G +PN TY + ++ RA
Sbjct: 354 GFKHDGHTYTTMVGNL-----GRAKQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRAN 408
Query: 212 KVDEARGLLQQMKAKGFVPDEKAVKEALID 241
+ EA + QM+ G PD + LID
Sbjct: 409 YLKEAMNVFNQMQEAGCEPD-RVTYCTLID 437
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 53/127 (41%), Gaps = 6/127 (4%)
Query: 106 ALQLFAQIKDK-GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
AL F +K + G D +T ++ A Q E ++ M+ G PN TY LI
Sbjct: 342 ALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGEINKLLDEMVRDGCKPNTVTYNRLI 401
Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
G A L +A +M G P+ TY + + +A +D A + Q+M+
Sbjct: 402 HSY-----GRANYLKEAMNVFNQMQEAGCEPDRVTYCTLIDIHAKAGFLDIAMDMYQRMQ 456
Query: 225 AKGFVPD 231
G PD
Sbjct: 457 EAGLSPD 463
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 34/78 (43%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
+ D K G +A Q + + G P+V +++ + + EA + MLA G
Sbjct: 575 LVDLWGKAGNVDKAWQWYQAMLQAGLRPNVPTCNSLLSTFLRVHRMSEAYNLLQSMLALG 634
Query: 153 VAPNAYTYAVLIKGLAAA 170
+ P+ TY +L+ A
Sbjct: 635 LHPSLQTYTLLLSCCTDA 652
>sp|Q0WKZ3|PP105_ARATH Pentatricopeptide repeat-containing protein At1g64580
OS=Arabidopsis thaliana GN=At1g64580 PE=2 SV=1
Length = 523
Score = 81.3 bits (199), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 78/165 (47%), Gaps = 8/165 (4%)
Query: 70 DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
D N E+F+ M +G+ +AV + LS G +A +L + + P+V+ T
Sbjct: 199 DLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFT 258
Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
A+I+ + G EA ++ M+ V PN +TY LI G LGDA+
Sbjct: 259 ALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHG-----CLGDAKYMFD 313
Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
MV KG P+ TY + F ++++V++ L +M +G V D
Sbjct: 314 LMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGD 358
Score = 67.4 bits (163), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 63/127 (49%), Gaps = 5/127 (3%)
Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
EA+ L + G +P+VV + VI AL VF M G+ +A TY LI
Sbjct: 167 EAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLI 226
Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
GL+ N+ DA + L +MV + + PN +TA+ + FV+ + EAR L ++M
Sbjct: 227 SGLS-----NSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMI 281
Query: 225 AKGFVPD 231
+ VP+
Sbjct: 282 RRSVVPN 288
Score = 65.1 bits (157), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 82/202 (40%), Gaps = 41/202 (20%)
Query: 77 IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
+F M ++G + V + K + ++LF ++ +G + D + +I Y
Sbjct: 311 MFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYC 370
Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKI------LGDAQKYLME 187
AG+ A +VF RM+ GV+P+ TY +L+ L N KI + D QK M+
Sbjct: 371 QAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLC----NNGKIEKALVMVEDLQKSEMD 426
Query: 188 ----------------------------MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGL 219
+ KG++P+A Y + R EA L
Sbjct: 427 VDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKL 486
Query: 220 LQQMKAKGFVPDEKAVKEALID 241
++MK GF+P E+ E L D
Sbjct: 487 CRRMKEDGFMPSERIYDETLRD 508
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 62/132 (46%), Gaps = 5/132 (3%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
+ + G +A +F + KG PDVV + +I + + + ++ +++F M G
Sbjct: 295 LINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQG 354
Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
+ +A+TY LI G A N AQK MV G+ P+ TY + + K
Sbjct: 355 LVGDAFTYNTLIHGYCQAGKLNV-----AQKVFNRMVDCGVSPDIVTYNILLDCLCNNGK 409
Query: 213 VDEARGLLQQMK 224
+++A +++ ++
Sbjct: 410 IEKALVMVEDLQ 421
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/127 (21%), Positives = 56/127 (44%), Gaps = 5/127 (3%)
Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
+A LF ++ +P +V T V+ A + + ++ +M G++ + Y++ +LI
Sbjct: 62 DAFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILI 121
Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
+ + + + M+ G RP+ T ++ F + + EA L+ M
Sbjct: 122 HCFCRCSRLSLALALLGK-----MMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMD 176
Query: 225 AKGFVPD 231
GFVP+
Sbjct: 177 GFGFVPN 183
>sp|Q940A6|PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440,
chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2
SV=2
Length = 838
Score = 81.3 bits (199), Expect = 7e-15, Method: Composition-based stats.
Identities = 57/185 (30%), Positives = 85/185 (45%), Gaps = 10/185 (5%)
Query: 75 QEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
QE F +M ++ + N V + A + G AL+L +K KG P+ +T++I+
Sbjct: 643 QEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKG 702
Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
+ + +EA +F M G+ PN + Y LI G G + + L EM K
Sbjct: 703 MSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGY-----GKLGQMVKVECLLREMHSK 757
Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVI 251
+ PN TYT + + R V EA LL +M+ KG VPD KE + QG GV+
Sbjct: 758 NVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFIYGYLKQG--GVL 815
Query: 252 NILFG 256
G
Sbjct: 816 EAFKG 820
Score = 79.0 bits (193), Expect = 3e-14, Method: Composition-based stats.
Identities = 44/134 (32%), Positives = 71/134 (52%), Gaps = 5/134 (3%)
Query: 95 DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
+A K G EA++LF+++++ G P+VV VI+ G+ EA +M+ G+
Sbjct: 281 NAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGME 340
Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
P TY++L+KGL AK +GDA L EM KG PN Y + ++F+ A ++
Sbjct: 341 PTLITYSILVKGLT-----RAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLN 395
Query: 215 EARGLLQQMKAKGF 228
+A + M +KG
Sbjct: 396 KAIEIKDLMVSKGL 409
Score = 75.5 bits (184), Expect = 3e-13, Method: Composition-based stats.
Identities = 40/116 (34%), Positives = 65/116 (56%), Gaps = 5/116 (4%)
Query: 116 KGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNA 175
KG PDV T I A+ G+ +EA+++F +M +GVAPN T+ +I GL G
Sbjct: 267 KGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGL-----GMC 321
Query: 176 KILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
+A + +MV +GM P TY+ + + RA+++ +A +L++M KGF P+
Sbjct: 322 GRYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPN 377
Score = 67.0 bits (162), Expect = 1e-10, Method: Composition-based stats.
Identities = 41/141 (29%), Positives = 70/141 (49%), Gaps = 6/141 (4%)
Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
EA+Q + K G +PDV ++ +I+ A + +E F M++ V PN Y LI
Sbjct: 606 EAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLI 665
Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
+ + L A + +M KG+ PN+ TYT++ + +V+EA+ L ++M+
Sbjct: 666 RAYCRSGR-----LSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMR 720
Query: 225 AKGFVPDEKAVKEALIDKRGQ 245
+G P+ ALID G+
Sbjct: 721 MEGLEPNVFHYT-ALIDGYGK 740
Score = 64.7 bits (156), Expect = 5e-10, Method: Composition-based stats.
Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 5/139 (3%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
+ L K G +AL+L+ Q +KG + D A++ AG+ EA R+ +L G
Sbjct: 489 LISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRG 548
Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
+ +Y LI G K L +A +L EMV +G++P+ TY+ + K
Sbjct: 549 CVMDRVSYNTLISGCCG-----KKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNK 603
Query: 213 VDEARGLLQQMKAKGFVPD 231
V+EA K G +PD
Sbjct: 604 VEEAIQFWDDCKRNGMLPD 622
Score = 56.2 bits (134), Expect = 2e-07, Method: Composition-based stats.
Identities = 43/175 (24%), Positives = 75/175 (42%), Gaps = 32/175 (18%)
Query: 87 TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFM 146
T+NA + L + G EA ++ +I +G + D V++ +I + EA
Sbjct: 520 TSNA--LLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLD 577
Query: 147 RMLASGVAPNAYTYAVLIKGL----------------------------AAAADG--NAK 176
M+ G+ P+ YTY++LI GL + DG A+
Sbjct: 578 EMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCKAE 637
Query: 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
+ Q++ EM+ K ++PN Y + A+ R+ ++ A L + MK KG P+
Sbjct: 638 RTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPN 692
Score = 47.4 bits (111), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/159 (22%), Positives = 67/159 (42%), Gaps = 30/159 (18%)
Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
+A + ++ KG P+V+ + +I+++ AG +A+ + M++ G++ + TY LI
Sbjct: 361 DAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLI 420
Query: 165 KGLA--AAADGNAKILGD----------------------------AQKYLMEMVGKGMR 194
KG AD ++L + A +++ EM+ + M
Sbjct: 421 KGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMS 480
Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK 233
P G T + + K +A L Q KGFV D +
Sbjct: 481 PGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTR 519
Score = 38.5 bits (88), Expect = 0.044, Method: Composition-based stats.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 10/93 (10%)
Query: 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQK--YLMEMVGKGMRPNAG 198
AL VF + G+ P+ T +L+ L A + QK ++V KG+ P+
Sbjct: 223 ALDVFPVLANKGMFPSKTTCNILLTSLVRA--------NEFQKCCEAFDVVCKGVSPDVY 274
Query: 199 TYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
+T AF + KV+EA L +M+ G P+
Sbjct: 275 LFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPN 307
>sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850,
chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1
Length = 862
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 87/179 (48%), Gaps = 14/179 (7%)
Query: 76 EIFHKMRTEG-----LTNNAVKMFDALSKDGLTHEAL-QLFAQIKDKGHMPDVVAHTAVI 129
E+ +M+ E LT N V +A ++ GL E L LFA+++ +G PD+V + ++
Sbjct: 197 ELLDRMKNEKISPSILTYNTV--INACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLL 254
Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
A A G G EA VF M G+ P+ TY+ L++ G + L L EM
Sbjct: 255 SACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETF-----GKLRRLEKVCDLLGEMA 309
Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFR 248
G P+ +Y + EA+ ++ + EA G+ QM+A G P+ L++ GQ R
Sbjct: 310 SGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYS-VLLNLFGQSGR 367
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 68/143 (47%), Gaps = 6/143 (4%)
Query: 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
+ L ++ G +PD+ ++ ++EAYA +G KEA+ VF +M A+G PNA TY+VL
Sbjct: 299 EKVCDLLGEMASGGSLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVL 358
Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
+ G + D ++ +EM P+A TY + E F E L M
Sbjct: 359 LNLF-----GQSGRYDDVRQLFLEMKSSNTDPDAATYNILIEVFGEGGYFKEVVTLFHDM 413
Query: 224 KAKGFVPDEKAVKEALIDKRGQG 246
+ PD + E +I G+G
Sbjct: 414 VEENIEPDMETY-EGIIFACGKG 435
Score = 64.7 bits (156), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 74/153 (48%), Gaps = 6/153 (3%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
+ +A +K G EA+ +F Q++ G P+ ++ ++ + +G+ + ++F+ M +S
Sbjct: 323 LLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSSN 382
Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
P+A TY +LI+ G + +MV + + P+ TY + A +
Sbjct: 383 TDPDAATYNILIEVF-----GEGGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGL 437
Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245
++AR +LQ M A VP KA +I+ GQ
Sbjct: 438 HEDARKILQYMTANDIVPSSKAYT-GVIEAFGQ 469
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 4/139 (2%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
M L ++GL + L++F ++ +G V ++TA+I AY G+ + +L + RM
Sbjct: 147 MISLLGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEK 206
Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
++P+ TY +I A +LG EM +G++P+ TY + A
Sbjct: 207 ISPSILTYNTVINACARGGLDWEGLLG----LFAEMRHEGIQPDIVTYNTLLSACAIRGL 262
Query: 213 VDEARGLLQQMKAKGFVPD 231
DEA + + M G VPD
Sbjct: 263 GDEAEMVFRTMNDGGIVPD 281
Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 73/166 (43%), Gaps = 8/166 (4%)
Query: 77 IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
+FH M E + + + A K GL +A ++ + +P A+T VIEA+
Sbjct: 409 LFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKAYTGVIEAFG 468
Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
A +EAL F M G P+ T+ L+ A ++ +++ L +V G+
Sbjct: 469 QAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGG-----LVKESEAILSRLVDSGI 523
Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
N T+ A EA+ + K +EA M+ PDE+ ++ L
Sbjct: 524 PRNRDTFNAQIEAYKQGGKFEEAVKTYVDMEKSRCDPDERTLEAVL 569
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 5/138 (3%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
+ +A + L EAL F + + G P + +++ ++A G KE+ + R++ SG
Sbjct: 463 VIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILSRLVDSG 522
Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
+ N T+ I+ +A K ++M P+ T AV + A+
Sbjct: 523 IPRNRDTFNAQIEAYKQGGK-----FEEAVKTYVDMEKSRCDPDERTLEAVLSVYSFARL 577
Query: 213 VDEARGLLQQMKAKGFVP 230
VDE R ++MKA +P
Sbjct: 578 VDECREQFEEMKASDILP 595
Score = 37.4 bits (85), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 63/146 (43%), Gaps = 7/146 (4%)
Query: 88 NNAVKMFDALSKDGLTHEALQLFAQIKDKGHM-PDVVAHTAVIEAYASAGQGKEALRVFM 146
N+ +F + G +L+LF ++ + P+ +T +I G + L VF
Sbjct: 106 NDFALVFKEFAGRGDWQRSLRLFKYMQRQIWCKPNEHIYTIMISLLGREGLLDKCLEVFD 165
Query: 147 RMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEA 206
M + GV+ + ++Y LI A +G + + + L M + + P+ TY V A
Sbjct: 166 EMPSQGVSRSVFSYTALIN--AYGRNGRYET---SLELLDRMKNEKISPSILTYNTVINA 220
Query: 207 FVRAQKVDEA-RGLLQQMKAKGFVPD 231
R E GL +M+ +G PD
Sbjct: 221 CARGGLDWEGLLGLFAEMRHEGIQPD 246
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 90/192 (46%), Gaps = 21/192 (10%)
Query: 76 EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
E+ KM + +AVK + D L KDG A LF +++ KG D++ +T +I +
Sbjct: 233 ELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGF 292
Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
AG+ + ++ M+ + P+ ++ LI L +A++ EM+ +G
Sbjct: 293 CYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGK-----LREAEELHKEMIQRG 347
Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA--------VKEALIDK-- 242
+ P+ TYT++ + F + ++D+A +L M +KG P+ + K LID
Sbjct: 348 ISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGL 407
Query: 243 ---RGQGFRGVI 251
R RGV+
Sbjct: 408 ELFRKMSLRGVV 419
Score = 67.4 bits (163), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 68/139 (48%), Gaps = 5/139 (3%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
+ D K+G EA +L ++ +G PD V +T++I+ + Q +A + M++ G
Sbjct: 323 LIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKG 382
Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
PN T+ +LI G A ++ D + +M +G+ + TY + + F K
Sbjct: 383 CGPNIRTFNILINGYC-----KANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGK 437
Query: 213 VDEARGLLQQMKAKGFVPD 231
++ A+ L Q+M ++ PD
Sbjct: 438 LEVAKELFQEMVSRRVRPD 456
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 69/139 (49%), Gaps = 5/139 (3%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
+ + L +G EAL+L ++ + GH P ++ A++ G+ +A+ + RM+ +G
Sbjct: 148 LINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETG 207
Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
PN TY ++K + + G + A + L +M + ++ +A Y+ + + +
Sbjct: 208 FQPNEVTYGPVLKVMCKS--GQTAL---AMELLRKMEERKIKLDAVKYSIIIDGLCKDGS 262
Query: 213 VDEARGLLQQMKAKGFVPD 231
+D A L +M+ KGF D
Sbjct: 263 LDNAFNLFNEMEIKGFKAD 281
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 66/145 (45%), Gaps = 11/145 (7%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
+ + K L + L+LF ++ +G + D V + +I+ + G+ + A +F M++
Sbjct: 393 LINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRR 452
Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL--MEMVGKG-MRPNAGTYTAVFEAFVR 209
V P+ +Y +L+ GL G+ +K L E + K M + G Y +
Sbjct: 453 VRPDIVSYKILLDGLCDN--------GEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCN 504
Query: 210 AQKVDEARGLLQQMKAKGFVPDEKA 234
A KVD+A L + KG PD K
Sbjct: 505 ASKVDDAWDLFCSLPLKGVKPDVKT 529
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 74/165 (44%), Gaps = 8/165 (4%)
Query: 75 QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
+E+F +M + + + V + D L +G +AL++F +I+ D+ + +I
Sbjct: 442 KELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHG 501
Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
+A + +A +F + GV P+ TY ++I GL L +A +M
Sbjct: 502 MCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGS-----LSEADLLFRKMEED 556
Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK 236
G PN TY + A + ++ L++++K GF D VK
Sbjct: 557 GHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTVK 601
Score = 58.2 bits (139), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 74/159 (46%), Gaps = 8/159 (5%)
Query: 76 EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
E+F KM G+ + V + + G A +LF ++ + PD+V++ +++
Sbjct: 408 ELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGL 467
Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
G+ ++AL +F ++ S + + Y ++I G+ NA + DA + KG
Sbjct: 468 CDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMC-----NASKVDDAWDLFCSLPLKG 522
Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
++P+ TY + + + EA L ++M+ G P+
Sbjct: 523 VKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPN 561
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 10/168 (5%)
Query: 76 EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
++ +M +G+ +N M + + A +I G+ PD V + +I
Sbjct: 93 DLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGL 152
Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
G+ EAL + RM+ G P T L+ GL N K+ DA + MV G
Sbjct: 153 CLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCL----NGKV-SDAVLLIDRMVETG 207
Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
+PN TY V + ++ + A LL++M+ + D AVK ++I
Sbjct: 208 FQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLD--AVKYSII 253
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 68/164 (41%), Gaps = 16/164 (9%)
Query: 52 KLPPPYDPFKKVVD--EEPTDPRNLQEIFHKMRTE------GLTNNAVKMFDALSKDGLT 103
++ P +K ++D + +P EIF K+ G+ N + SK
Sbjct: 452 RVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASK---V 508
Query: 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
+A LF + KG PDV + +I G EA +F +M G +PN TY +L
Sbjct: 509 DDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNIL 568
Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAF 207
I+ A +G+A + K + E+ G +A T V +
Sbjct: 569 IR--AHLGEGDAT---KSAKLIEEIKRCGFSVDASTVKMVVDML 607
Score = 35.4 bits (80), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/126 (20%), Positives = 52/126 (41%), Gaps = 5/126 (3%)
Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
+A+ LF ++ P ++ + + A Q L + +M G+A N YT +++I
Sbjct: 55 DAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMI 114
Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
+ L A + +++ G P+ T++ + +V EA L+ +M
Sbjct: 115 NCCC-----RCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMV 169
Query: 225 AKGFVP 230
G P
Sbjct: 170 EMGHKP 175
>sp|Q9LR67|PPR9_ARATH Pentatricopeptide repeat-containing protein At1g03560,
mitochondrial OS=Arabidopsis thaliana GN=At1g03560 PE=2
SV=1
Length = 660
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 76/146 (52%), Gaps = 6/146 (4%)
Query: 96 ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155
L K+G +E +F + KG P+V +T +I+ YA +G ++A+R+ RM+ G P
Sbjct: 336 GLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKP 395
Query: 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215
+ TY+V++ GL N ++ +A Y G+ N+ Y+++ + +A +VDE
Sbjct: 396 DVVTYSVVVNGLCK----NGRV-EEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDE 450
Query: 216 ARGLLQQMKAKGFVPDEKAVKEALID 241
A L ++M KG D ALID
Sbjct: 451 AERLFEEMSEKGCTRDSYCYN-ALID 475
Score = 78.6 bits (192), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 72/132 (54%), Gaps = 5/132 (3%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
+ D +K G +A++L ++ D+G PDVV ++ V+ G+ +EAL F G
Sbjct: 368 LIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDG 427
Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
+A N+ Y+ LI GL G A + +A++ EM KG ++ Y A+ +AF + +K
Sbjct: 428 LAINSMFYSSLIDGL-----GKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRK 482
Query: 213 VDEARGLLQQMK 224
VDEA L ++M+
Sbjct: 483 VDEAIALFKRME 494
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 79/170 (46%), Gaps = 11/170 (6%)
Query: 76 EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
+ FH R +GL N++ + D L K G EA +LF ++ +KG D + A+I+A+
Sbjct: 418 DYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAF 477
Query: 133 ASAGQGKEALRVFMRMLAS-GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
+ EA+ +F RM G YTY +L+ G+ +A K M+ K
Sbjct: 478 TKHRKVDEAIALFKRMEEEEGCDQTVYTYTILLSGMFKEHRNE-----EALKLWDMMIDK 532
Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
G+ P A + A+ + KV A +L ++ G + D A E +I+
Sbjct: 533 GITPTAACFRALSTGLCLSGKVARACKILDELAPMGVILD--AACEDMIN 580
Score = 57.8 bits (138), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 64/156 (41%), Gaps = 6/156 (3%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
M A D + L+ ++ +KG A + VI G+ E VF M+ G
Sbjct: 298 MIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKG 357
Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
PN Y VLI G A + + DA + L M+ +G +P+ TY+ V + +
Sbjct: 358 SKPNVAIYTVLIDGYAKSGS-----VEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGR 412
Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFR 248
V+EA + G + +LID G+ R
Sbjct: 413 VEEALDYFHTCRFDGLAIN-SMFYSSLIDGLGKAGR 447
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 58/140 (41%), Gaps = 8/140 (5%)
Query: 88 NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMR 147
N +K F L G+ E L ++ ++K+ G P + + ++ SA A RVF
Sbjct: 191 NALIKSFGKL---GMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEV 247
Query: 148 MLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAF 207
M + + P+ TY +IKG A A + L +M +G + TY + +A
Sbjct: 248 MESGRIKPDIVTYNTMIKGYCKAGQTQK-----AMEKLRDMETRGHEADKITYMTMIQAC 302
Query: 208 VRAQKVDEARGLLQQMKAKG 227
L Q+M KG
Sbjct: 303 YADSDFGSCVALYQEMDEKG 322
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 69/127 (54%), Gaps = 5/127 (3%)
Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
+A+ L ++ + G+ PD+VA+ A+I++ + +A F + G+ PN TY L+
Sbjct: 173 DAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALV 232
Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
GL N+ DA + L +M+ K + PN TY+A+ +AFV+ KV EA+ L ++M
Sbjct: 233 NGLC-----NSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMV 287
Query: 225 AKGFVPD 231
PD
Sbjct: 288 RMSIDPD 294
Score = 73.9 bits (180), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 71/139 (51%), Gaps = 5/139 (3%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
+ D+L K ++A F +I+ KG P+VV +TA++ ++ + +A R+ M+
Sbjct: 196 IIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKK 255
Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
+ PN TY+ L+ N K+L +A++ EMV + P+ TY+++ +
Sbjct: 256 ITPNVITYSALLDAFVK----NGKVL-EAKELFEEMVRMSIDPDIVTYSSLINGLCLHDR 310
Query: 213 VDEARGLLQQMKAKGFVPD 231
+DEA + M +KG + D
Sbjct: 311 IDEANQMFDLMVSKGCLAD 329
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 5/139 (3%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
+ DA K+G EA +LF ++ PD+V ++++I + EA ++F M++ G
Sbjct: 266 LLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKG 325
Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
+ +Y LI G AK + D K EM +G+ N TY + + F +A
Sbjct: 326 CLADVVSYNTLINGFC-----KAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGD 380
Query: 213 VDEARGLLQQMKAKGFVPD 231
VD+A+ QM G PD
Sbjct: 381 VDKAQEFFSQMDFFGISPD 399
Score = 61.2 bits (147), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 84/182 (46%), Gaps = 10/182 (5%)
Query: 50 KSKLPPPYDPFKKVVDEEPTDPRNLQ--EIFHKMRTEGLTNNAV---KMFDALSKDGLTH 104
K K+ P + ++D + + L+ E+F +M + + V + + L
Sbjct: 253 KKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRID 312
Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
EA Q+F + KG + DVV++ +I + A + ++ +++F M G+ N TY LI
Sbjct: 313 EANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLI 372
Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
+G A D + AQ++ +M G+ P+ TY + ++++A + + M+
Sbjct: 373 QGFFQAGD-----VDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQ 427
Query: 225 AK 226
+
Sbjct: 428 KR 429
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 72/166 (43%), Gaps = 8/166 (4%)
Query: 76 EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
++F +M GL +N V + + G +A + F+Q+ G PD+ + ++
Sbjct: 351 KLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGL 410
Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
G+ ++AL +F M + + TY +I+G+ + +A + KG
Sbjct: 411 CDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGK-----VEEAWSLFCSLSLKG 465
Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEA 238
++P+ TYT + + E L +MK +G + ++ + +
Sbjct: 466 LKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTLSDG 511
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 5/115 (4%)
Query: 117 GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK 176
G D+ VI + Q AL + +ML G P+ T L+ G
Sbjct: 115 GIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFC-----RRN 169
Query: 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
+ DA + +MV G +P+ Y A+ ++ + ++V++A ++++ KG P+
Sbjct: 170 RVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPN 224
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 58/130 (44%), Gaps = 8/130 (6%)
Query: 75 QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
QE F +M G++ + + L +G +AL +F ++ + D+V +T VI
Sbjct: 385 QEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRG 444
Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
G+ +EA +F + G+ P+ TY ++ GL +L + + +M +
Sbjct: 445 MCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKG-----LLHEVEALYTKMKQE 499
Query: 192 GMRPNAGTYT 201
G+ N T +
Sbjct: 500 GLMKNDCTLS 509
>sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700,
mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3
SV=1
Length = 602
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 8/165 (4%)
Query: 75 QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
+E+F +M + G+ + + + D L +G +AL++F ++ +V +T +IE
Sbjct: 423 EELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEG 482
Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
G+ ++A +F + GV PN TY V+I GL L +A L +M
Sbjct: 483 MCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGS-----LSEANILLRKMEED 537
Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK 236
G PN TY + A +R + + L+++MK+ GF D ++K
Sbjct: 538 GNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIK 582
Score = 67.8 bits (164), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 68/139 (48%), Gaps = 5/139 (3%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
+ + + + G T AL L +++++ DV ++ +I++ G A+ +F M G
Sbjct: 199 IVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKG 258
Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
+ + TY L++GL A N D L +MV + + PN T+ + + FV+ K
Sbjct: 259 IKSSVVTYNSLVRGLCKAGKWN-----DGALLLKDMVSREIVPNVITFNVLLDVFVKEGK 313
Query: 213 VDEARGLLQQMKAKGFVPD 231
+ EA L ++M +G P+
Sbjct: 314 LQEANELYKEMITRGISPN 332
Score = 67.4 bits (163), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 69/139 (49%), Gaps = 5/139 (3%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
+ D K+G EA +L+ ++ +G P+++ + +++ Y + EA + M+ +
Sbjct: 304 LLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNK 363
Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
+P+ T+ LIKG K + D K + +G+ NA TY+ + + F ++ K
Sbjct: 364 CSPDIVTFTSLIKGYCM-----VKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGK 418
Query: 213 VDEARGLLQQMKAKGFVPD 231
+ A L Q+M + G +PD
Sbjct: 419 IKLAEELFQEMVSHGVLPD 437
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 5/139 (3%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
+ D+L +DG A+ LF +++ KG VV + +++ AG+ + + M++
Sbjct: 234 IIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSRE 293
Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
+ PN T+ VL+ L +A + EM+ +G+ PN TY + + + +
Sbjct: 294 IVPNVITFNVLLDVFVKEGK-----LQEANELYKEMITRGISPNIITYNTLMDGYCMQNR 348
Query: 213 VDEARGLLQQMKAKGFVPD 231
+ EA +L M PD
Sbjct: 349 LSEANNMLDLMVRNKCSPD 367
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 63/132 (47%), Gaps = 5/132 (3%)
Query: 100 DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYT 159
+G EA+ L ++ + G PDVV + +++ +G AL + +M V + +T
Sbjct: 171 EGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFT 230
Query: 160 YAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGL 219
Y+ +I L DG + A EM KG++ + TY ++ +A K ++ L
Sbjct: 231 YSTIIDSL--CRDG---CIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALL 285
Query: 220 LQQMKAKGFVPD 231
L+ M ++ VP+
Sbjct: 286 LKDMVSREIVPN 297
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/136 (22%), Positives = 62/136 (45%), Gaps = 5/136 (3%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
M + + T A + ++ G+ PD +I+ G+ EA+ + RM+ +G
Sbjct: 129 MINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENG 188
Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
P+ TY ++ G+ + D + A L +M + ++ + TY+ + ++ R
Sbjct: 189 CQPDVVTYNSIVNGICRSGDTSL-----ALDLLRKMEERNVKADVFTYSTIIDSLCRDGC 243
Query: 213 VDEARGLLQQMKAKGF 228
+D A L ++M+ KG
Sbjct: 244 IDAAISLFKEMETKGI 259
Score = 40.0 bits (92), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 50/129 (38%), Gaps = 9/129 (6%)
Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
+A+ LF ++ +P +V + A A Q L ++ +G+A N YT ++I
Sbjct: 71 DAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMI 130
Query: 165 KGLAAAADGN--AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
+LG K G P+ T+ + + KV EA L+ +
Sbjct: 131 NCFCRCCKTCFAYSVLGKVMKL-------GYEPDTTTFNTLIKGLFLEGKVSEAVVLVDR 183
Query: 223 MKAKGFVPD 231
M G PD
Sbjct: 184 MVENGCQPD 192
>sp|Q9LS25|PP420_ARATH Pentatricopeptide repeat-containing protein At5g46580,
chloroplastic OS=Arabidopsis thaliana GN=At5g46580 PE=2
SV=1
Length = 711
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 79/149 (53%), Gaps = 8/149 (5%)
Query: 99 KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAY 158
+ L ++A++ F ++ G MPD V ++A+++ Y+ +G+ +E L ++ R +A+G P+A
Sbjct: 233 RCNLYNKAIEWFERMYKTGLMPDEVTYSAILDVYSKSGKVEEVLSLYERAVATGWKPDAI 292
Query: 159 TYAVLIKGLAAAADGNAKILGDAQKY-LMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217
++VL K A D D +Y L EM ++PN Y + EA RA K AR
Sbjct: 293 AFSVLGKMFGEAGD------YDGIRYVLQEMKSMDVKPNVVVYNTLLEAMGRAGKPGLAR 346
Query: 218 GLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
L +M G P+EK + AL+ G+
Sbjct: 347 SLFNEMLEAGLTPNEKTLT-ALVKIYGKA 374
Score = 64.7 bits (156), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 72/159 (45%), Gaps = 8/159 (5%)
Query: 76 EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
E F +M GL + V + D SK G E L L+ + G PD +A + + + +
Sbjct: 242 EWFERMYKTGLMPDEVTYSAILDVYSKSGKVEEVLSLYERAVATGWKPDAIAFSVLGKMF 301
Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
AG V M + V PN Y L++ + G A G A+ EM+ G
Sbjct: 302 GEAGDYDGIRYVLQEMKSMDVKPNVVVYNTLLEAM-----GRAGKPGLARSLFNEMLEAG 356
Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
+ PN T TA+ + + +A+ +A L ++MKAK + D
Sbjct: 357 LTPNEKTLTALVKIYGKARWARDALQLWEEMKAKKWPMD 395
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 77/169 (45%), Gaps = 18/169 (10%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHM-PDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
+ + + GL EA +LF +K+ PD ++TA++ Y S G+ ++A+ +F ML +
Sbjct: 402 LLNMCADIGLEEEAERLFNDMKESVQCRPDNFSYTAMLNIYGSGGKAEKAMELFEEMLKA 461
Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN---AGTYTAVFEAFV 208
GV N L++ L G AK + D + +G++P+ G +V
Sbjct: 462 GVQVNVMGCTCLVQCL-----GKAKRIDDVVYVFDLSIKRGVKPDDRLCGCLLSVMALCE 516
Query: 209 RAQKVDEARGLLQQMKAK-----GFVPDEKAVKEALIDKRGQGFRGVIN 252
++ ++ L++ K + DEK E + ++ F+ VIN
Sbjct: 517 SSEDAEKVMACLERANKKLVTFVNLIVDEKTEYETVKEE----FKLVIN 561
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 76/164 (46%), Gaps = 11/164 (6%)
Query: 75 QEIFHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
+ +F++M GLT N K AL K +ALQL+ ++K K D + + ++
Sbjct: 346 RSLFNEMLEAGLTPNE-KTLTALVKIYGKARWARDALQLWEEMKAKKWPMDFILYNTLLN 404
Query: 131 AYASAGQGKEALRVFMRMLAS-GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
A G +EA R+F M S P+ ++Y ++ + G A+ A + EM+
Sbjct: 405 MCADIGLEEEAERLFNDMKESVQCRPDNFSYTAMLN--IYGSGGKAE---KAMELFEEML 459
Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK 233
G++ N T + + +A+++D+ + +G PD++
Sbjct: 460 KAGVQVNVMGCTCLVQCLGKAKRIDDVVYVFDLSIKRGVKPDDR 503
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 79.3 bits (194), Expect = 3e-14, Method: Composition-based stats.
Identities = 49/139 (35%), Positives = 70/139 (50%), Gaps = 5/139 (3%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
M D+L K EA LF ++ KG P+VV +TA+I+ Y AG+ EA + +ML+
Sbjct: 503 MIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKN 562
Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
PN+ T+ LI GL ADG K +A +MV G++P T T + ++
Sbjct: 563 CLPNSLTFNALIHGL--CADGKLK---EATLLEEKMVKIGLQPTVSTDTILIHRLLKDGD 617
Query: 213 VDEARGLLQQMKAKGFVPD 231
D A QQM + G PD
Sbjct: 618 FDHAYSRFQQMLSSGTKPD 636
Score = 73.6 bits (179), Expect = 1e-12, Method: Composition-based stats.
Identities = 43/167 (25%), Positives = 83/167 (49%), Gaps = 8/167 (4%)
Query: 76 EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
++F++M +G N V + L EA+ LF ++KD P V +T +I++
Sbjct: 274 KVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSL 333
Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
+ + EAL + M +G+ PN +TY VLI L + A++ L +M+ KG
Sbjct: 334 CGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCK-----FEKARELLGQMLEKG 388
Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
+ PN TY A+ + + +++A +++ M+++ P+ + E +
Sbjct: 389 LMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELI 435
Score = 68.9 bits (167), Expect = 3e-11, Method: Composition-based stats.
Identities = 41/140 (29%), Positives = 70/140 (50%), Gaps = 6/140 (4%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
+ D+L +A +L Q+ +KG MP+V+ + A+I Y G ++A+ V M +
Sbjct: 364 LIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRK 423
Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
++PN TY LIKG + + A L +M+ + + P+ TY ++ + R+
Sbjct: 424 LSPNTRTYNELIKGYCKSN------VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGN 477
Query: 213 VDEARGLLQQMKAKGFVPDE 232
D A LL M +G VPD+
Sbjct: 478 FDSAYRLLSLMNDRGLVPDQ 497
Score = 68.2 bits (165), Expect = 6e-11, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 69/128 (53%), Gaps = 5/128 (3%)
Query: 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
H+A+ + ++ ++ +PDVV + ++I+ +G A R+ M G+ P+ +TY +
Sbjct: 444 HKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSM 503
Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
I L +K + +A + KG+ PN YTA+ + + +A KVDEA +L++M
Sbjct: 504 IDSLC-----KSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKM 558
Query: 224 KAKGFVPD 231
+K +P+
Sbjct: 559 LSKNCLPN 566
Score = 62.0 bits (149), Expect = 4e-09, Method: Composition-based stats.
Identities = 36/132 (27%), Positives = 65/132 (49%), Gaps = 5/132 (3%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
+ ++L++ GL E Q++ ++ + P++ + ++ Y G +EA + +++ +G
Sbjct: 189 LLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAG 248
Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
+ P+ +TY LI G D L A K EM KG R N YT + A++
Sbjct: 249 LDPDFFTYTSLIMGYCQRKD-----LDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARR 303
Query: 213 VDEARGLLQQMK 224
+DEA L +MK
Sbjct: 304 IDEAMDLFVKMK 315
Score = 59.3 bits (142), Expect = 3e-08, Method: Composition-based stats.
Identities = 50/191 (26%), Positives = 77/191 (40%), Gaps = 33/191 (17%)
Query: 74 LQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
+++++ +M + + N KM + K G EA Q ++I + G PD +T++I
Sbjct: 202 MKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIM 261
Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA------AADGNAKILGD---- 180
Y A +VF M G N Y LI GL A D K+ D
Sbjct: 262 GYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFP 321
Query: 181 --------------------AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220
A + EM G++PN TYT + ++ K ++AR LL
Sbjct: 322 TVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELL 381
Query: 221 QQMKAKGFVPD 231
QM KG +P+
Sbjct: 382 GQMLEKGLMPN 392
Score = 58.2 bits (139), Expect = 6e-08, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 5/138 (3%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
+ D + G A +L + + D+G +PD +T++I++ + + +EA +F + G
Sbjct: 468 LIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKG 527
Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
V PN Y LI G A + +A L +M+ K PN+ T+ A+ K
Sbjct: 528 VNPNVVMYTALIDGYCKAGK-----VDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGK 582
Query: 213 VDEARGLLQQMKAKGFVP 230
+ EA L ++M G P
Sbjct: 583 LKEATLLEEKMVKIGLQP 600
Score = 53.1 bits (126), Expect = 2e-06, Method: Composition-based stats.
Identities = 40/147 (27%), Positives = 66/147 (44%), Gaps = 7/147 (4%)
Query: 86 LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVF 145
LT NA + L DG EA L ++ G P V T +I G A F
Sbjct: 568 LTFNA--LIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRF 625
Query: 146 MRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFE 205
+ML+SG P+A+TY I+ L DA+ + +M G+ P+ TY+++ +
Sbjct: 626 QQMLSSGTKPDAHTYTTFIQTYCREGR-----LLDAEDMMAKMRENGVSPDLFTYSSLIK 680
Query: 206 AFVRAQKVDEARGLLQQMKAKGFVPDE 232
+ + + A +L++M+ G P +
Sbjct: 681 GYGDLGQTNFAFDVLKRMRDTGCEPSQ 707
Score = 52.0 bits (123), Expect = 4e-06, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 56/110 (50%), Gaps = 5/110 (4%)
Query: 125 HTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKY 184
+ ++ + A G E +V+M ML V PN YTY ++ G GN + +A +Y
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKL--GNVE---EANQY 240
Query: 185 LMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
+ ++V G+ P+ TYT++ + + + +D A + +M KG +E A
Sbjct: 241 VSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVA 290
Score = 49.7 bits (117), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/185 (22%), Positives = 73/185 (39%), Gaps = 23/185 (12%)
Query: 74 LQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
L+E K+ + + + L KDG A F Q+ G PD +T I+ Y
Sbjct: 589 LEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYC 648
Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
G+ +A + +M +GV+P+ +TY+ LIKG N A L M G
Sbjct: 649 REGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNF-----AFDVLKRMRDTGC 703
Query: 194 RPNAGTYTAVFE------------------AFVRAQKVDEARGLLQQMKAKGFVPDEKAV 235
P+ T+ ++ + A + D LL++M P+ K+
Sbjct: 704 EPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSY 763
Query: 236 KEALI 240
++ ++
Sbjct: 764 EKLIL 768
>sp|P0C7R3|PP106_ARATH Pentatricopeptide repeat-containing protein At1g64583,
mitochondrial OS=Arabidopsis thaliana GN=At1g64583 PE=2
SV=1
Length = 512
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 73/159 (45%), Gaps = 8/159 (5%)
Query: 76 EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
E+ ++M +GL + V + L G +A ++ + + PDVV TA+I+ +
Sbjct: 197 ELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVF 256
Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
G EA ++ M+ S V PN TY +I GL L DA+K M KG
Sbjct: 257 VKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGR-----LYDAKKTFDLMASKG 311
Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
PN TY + F + + VDE L Q+M +GF D
Sbjct: 312 CFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNAD 350
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 62/127 (48%), Gaps = 5/127 (3%)
Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
+A L + G+ P+VV + +I+ G+ AL + M G+ + TY L+
Sbjct: 159 DAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLL 218
Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
GL + + DA + L +M+ + + P+ T+TA+ + FV+ +DEA+ L ++M
Sbjct: 219 TGLCYSGRWS-----DAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMI 273
Query: 225 AKGFVPD 231
P+
Sbjct: 274 QSSVDPN 280
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/211 (19%), Positives = 88/211 (41%), Gaps = 37/211 (17%)
Query: 50 KSKLPPPYDPFKKVVDEEPTDPRNL--QEIFHKMRTEGLTNNAVKMFDALSKDG------ 101
+ L + +K+++ + DP N+ I + + G +A K FD ++ G
Sbjct: 259 QGNLDEAQELYKEMI-QSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVV 317
Query: 102 -------------LTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRM 148
+ E ++LF ++ +G D+ + +I Y G+ + AL +F M
Sbjct: 318 TYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWM 377
Query: 149 LASGVAPNAYTYAVLIKGLAAAADGNAKI-----LGDAQKYLMEMVGKGMRPNAGTYTAV 203
++ V P+ T+ +L+ GL + + + + +++KY+ Y +
Sbjct: 378 VSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYI----------GIVAYNIM 427
Query: 204 FEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
+A KV++A L ++ +G PD +
Sbjct: 428 IHGLCKADKVEKAWELFCRLPVEGVKPDART 458
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 58/129 (44%), Gaps = 6/129 (4%)
Query: 104 HEALQLFAQ-IKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAV 162
+E + F+Q ++ G D+ + T +I + + AL V +M+ G P+ T+
Sbjct: 87 YETVIYFSQKMELYGISHDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGS 146
Query: 163 LIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222
L+ G +GDA ++ MV G PN Y + + + +++ A LL +
Sbjct: 147 LLHGFCLVNR-----IGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNE 201
Query: 223 MKAKGFVPD 231
M+ KG D
Sbjct: 202 MEKKGLGAD 210
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 10/168 (5%)
Query: 76 EIFHKMRTEGLTNNAVKMFDAL----SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
++F +M EG N + ++ L + G AL +F + + PD++ H ++
Sbjct: 337 KLFQRMSCEGF-NADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHG 395
Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
G+ + AL F M S Y ++I GL AD K A + + +
Sbjct: 396 LCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGL-CKADKVEK----AWELFCRLPVE 450
Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
G++P+A TYT + + EA L+++MK +G + A + L
Sbjct: 451 GVKPDARTYTIMILGLCKNGPRREADELIRRMKEEGIICQMNAEDDHL 498
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 66/149 (44%), Gaps = 8/149 (5%)
Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
+A LF ++ +P +V T ++ A A+ + + + +M G++ + Y++ +LI
Sbjct: 54 DAFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTILI 113
Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
+ L A L +M+ G P+ T+ ++ F ++ +A L+ M
Sbjct: 114 HCFCRCSR-----LSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMV 168
Query: 225 AKGFVPDEKAVKEALIDKRGQGFRGVINI 253
G+ P+ V LID G G +NI
Sbjct: 169 KSGYEPN-VVVYNTLID--GLCKNGELNI 194
>sp|Q9ZUE9|PP149_ARATH Pentatricopeptide repeat-containing protein At2g06000
OS=Arabidopsis thaliana GN=At2g06000 PE=2 SV=1
Length = 536
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 81/160 (50%), Gaps = 7/160 (4%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
+ D +K G A ++ ++ G PDVV T++I+ Y GQ + R++ M A G
Sbjct: 318 LVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARG 377
Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
+ PNA+TY++LI L N L A++ L ++ K + P Y V + F +A K
Sbjct: 378 MFPNAFTYSILINALC-----NENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGK 432
Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDK--RGQGFRGV 250
V+EA ++++M+ K PD+ +I +G+ F V
Sbjct: 433 VNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAV 472
Score = 68.2 bits (165), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 71/140 (50%), Gaps = 6/140 (4%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHM-PDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151
+ K ++A ++F +K PDVV +T++I Y AG+ +EA + ML
Sbjct: 247 LIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRL 306
Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
G+ P T+ VL+ G A A + + A++ +M+ G P+ T+T++ + + R
Sbjct: 307 GIYPTNVTFNVLVDGYAKAGE-----MLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVG 361
Query: 212 KVDEARGLLQQMKAKGFVPD 231
+V + L ++M A+G P+
Sbjct: 362 QVSQGFRLWEEMNARGMFPN 381
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 62/156 (39%), Gaps = 8/156 (5%)
Query: 77 IFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136
+ EG + + L K +A++LF + D +I G
Sbjct: 161 LLQSFEVEGCCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVG 220
Query: 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN--AKILGDAQKYLMEMVGKGMR 194
+ ++AL + M G P+ TY LI+G + + N +++ D + G
Sbjct: 221 KAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKS------GSVCS 274
Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
P+ TYT++ + +A K+ EA LL M G P
Sbjct: 275 PDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYP 310
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 65/154 (42%), Gaps = 9/154 (5%)
Query: 77 IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
++ +M G+ NA + +AL + +A +L Q+ K +P + VI+ +
Sbjct: 369 LWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFC 428
Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
AG+ EA + M P+ T+ +LI G + +A +MV G
Sbjct: 429 KAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGR-----MFEAVSIFHKMVAIGC 483
Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
P+ T +++ ++A EA L Q+ KG
Sbjct: 484 SPDKITVSSLLSCLLKAGMAKEAYH-LNQIARKG 516
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 78.6 bits (192), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 79/159 (49%), Gaps = 8/159 (5%)
Query: 76 EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
++ +MR G T + V + + + K+G EA++ + G P+V+ H ++ +
Sbjct: 260 KLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSM 319
Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
S G+ +A ++ ML G +P+ T+ +LI L +LG A L +M G
Sbjct: 320 CSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKG-----LLGRAIDILEKMPQHG 374
Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
+PN+ +Y + F + +K+D A L++M ++G PD
Sbjct: 375 CQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPD 413
Score = 78.2 bits (191), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 81/162 (50%), Gaps = 8/162 (4%)
Query: 76 EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
E +M + G + V M AL KDG +A+++ Q+ KG P ++ + VI+
Sbjct: 400 EYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGL 459
Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
A AG+ +A+++ M A + P+ TY+ L+ GL+ + +A K+ E G
Sbjct: 460 AKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGK-----VDEAIKFFHEFERMG 514
Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
+RPNA T+ ++ ++++ D A L M +G P+E +
Sbjct: 515 IRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETS 556
Score = 70.9 bits (172), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 82/164 (50%), Gaps = 12/164 (7%)
Query: 76 EIFHKMRTEG-----LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130
EI +++ ++G +T N V D L+K G T +A++L +++ K PD + +++++
Sbjct: 435 EILNQLSSKGCSPVLITYNTV--IDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVG 492
Query: 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
+ G+ EA++ F G+ PNA T+ ++ GL + + I +L+ M+
Sbjct: 493 GLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAI-----DFLVFMIN 547
Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
+G +PN +YT + E EA LL ++ KG + A
Sbjct: 548 RGCKPNETSYTILIEGLAYEGMAKEALELLNELCNKGLMKKSSA 591
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 68/139 (48%), Gaps = 5/139 (3%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
+ +A +D A++L +++D+G PDVV + ++ G+ EA++ M +SG
Sbjct: 245 LIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSG 304
Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
PN T+ ++++ + + DA+K L +M+ KG P+ T+ + R
Sbjct: 305 CQPNVITHNIILRSMCSTGR-----WMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGL 359
Query: 213 VDEARGLLQQMKAKGFVPD 231
+ A +L++M G P+
Sbjct: 360 LGRAIDILEKMPQHGCQPN 378
Score = 68.2 bits (165), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 8/159 (5%)
Query: 76 EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
+I KM G N++ + K+ A++ ++ +G PD+V + ++ A
Sbjct: 365 DILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTAL 424
Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
G+ ++A+ + ++ + G +P TY +I GLA A G A K L EM K
Sbjct: 425 CKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGK-----TGKAIKLLDEMRAKD 479
Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
++P+ TY+++ R KVDEA + + G P+
Sbjct: 480 LKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPN 518
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 64/139 (46%), Gaps = 8/139 (5%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
M K G + AL + ++ PDVV + ++ + +G+ K+A+ V RML
Sbjct: 178 MISGYCKAGEINNALSVLDRMSVS---PDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRD 234
Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
P+ TY +LI+ A D +G A K L EM +G P+ TY + + +
Sbjct: 235 CYPDVITYTILIE--ATCRDSG---VGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGR 289
Query: 213 VDEARGLLQQMKAKGFVPD 231
+DEA L M + G P+
Sbjct: 290 LDEAIKFLNDMPSSGCQPN 308
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 5/138 (3%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
+ +L G +A+++ ++ + PDV+ +T +IEA A+++ M G
Sbjct: 210 ILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRG 269
Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
P+ TY VL+ G+ L +A K+L +M G +PN T+ + + +
Sbjct: 270 CTPDVVTYNVLVNGICKEGR-----LDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGR 324
Query: 213 VDEARGLLQQMKAKGFVP 230
+A LL M KGF P
Sbjct: 325 WMDAEKLLADMLRKGFSP 342
Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 5/139 (3%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
+ + L + GL A+ + ++ G P+ +++ ++ + + A+ RM++ G
Sbjct: 350 LINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRG 409
Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
P+ TY ++ L DG + DA + L ++ KG P TY V + +A K
Sbjct: 410 CYPDIVTYNTMLTAL--CKDGKVE---DAVEILNQLSSKGCSPVLITYNTVIDGLAKAGK 464
Query: 213 VDEARGLLQQMKAKGFVPD 231
+A LL +M+AK PD
Sbjct: 465 TGKAIKLLDEMRAKDLKPD 483
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 71/172 (41%), Gaps = 30/172 (17%)
Query: 87 TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFM 146
+NN ++ + + G E + + G++PD++ T +I + G+ ++A ++
Sbjct: 105 SNNHLR---QMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILE 161
Query: 147 RMLASGVAPNAYTYAVLIKGLAAAADGNAKI---------------------------LG 179
+ SG P+ TY V+I G A + N + L
Sbjct: 162 ILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVSPDVVTYNTILRSLCDSGKLK 221
Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
A + L M+ + P+ TYT + EA R V A LL +M+ +G PD
Sbjct: 222 QAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPD 273
Score = 35.8 bits (81), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 63/162 (38%), Gaps = 7/162 (4%)
Query: 80 KMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGK 139
K+ + GL A K F+ LS ++ + + DV ++ + G+ +
Sbjct: 62 KVESSGLNGRAQK-FETLSSGYSNSNGNGHYSSVNSSFALEDVESNNH-LRQMVRTGELE 119
Query: 140 EALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGT 199
E + M+ G P+ LI+G G + A K L + G G P+ T
Sbjct: 120 EGFKFLENMVYHGNVPDIIPCTTLIRGFCRL--GKTR---KAAKILEILEGSGAVPDVIT 174
Query: 200 YTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
Y + + +A +++ A +L +M V + +L D
Sbjct: 175 YNVMISGYCKAGEINNALSVLDRMSVSPDVVTYNTILRSLCD 216
>sp|Q9LSF5|PP254_ARATH Pentatricopeptide repeat-containing protein At3g25210,
mitochondrial OS=Arabidopsis thaliana GN=At3g25210 PE=2
SV=1
Length = 379
Score = 78.6 bits (192), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 61/128 (47%), Gaps = 5/128 (3%)
Query: 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
H L Q+K G +PD +I+AYA + EA+RVF M G PNAYTY+ L
Sbjct: 205 HAVRSLTKQMKSNGVIPDTFVLNMIIKAYAKCLEVDEAIRVFKEMALYGSEPNAYTYSYL 264
Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
+KG+ +G + EM KGM PN Y + + +++DEA ++ M
Sbjct: 265 VKGVCEKGR-----VGQGLGFYKEMQVKGMVPNGSCYMVLICSLSMERRLDEAVEVVYDM 319
Query: 224 KAKGFVPD 231
A PD
Sbjct: 320 LANSLSPD 327
Score = 35.4 bits (80), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/101 (21%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
Query: 77 IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
+F +M G NA + + + G + L + +++ KG +P+ + +I + +
Sbjct: 245 VFKEMALYGSEPNAYTYSYLVKGVCEKGRVGQGLGFYKEMQVKGMVPNGSCYMVLICSLS 304
Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174
+ EA+ V MLA+ ++P+ TY ++ L G+
Sbjct: 305 MERRLDEAVEVVYDMLANSLSPDMLTYNTVLTELCRGGRGS 345
>sp|Q9LN22|PPR54_ARATH Pentatricopeptide repeat-containing protein At1g20300,
mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2
SV=1
Length = 537
Score = 77.8 bits (190), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 9/158 (5%)
Query: 77 IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
F++M G + + + LS+ EA F +KD+ PDV+ +T ++ +
Sbjct: 208 CFNRMEDYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSLKDRFE-PDVIVYTNLVRGWC 266
Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
AG+ EA +VF M +G+ PN YTY+++I L + A +M+ G
Sbjct: 267 RAGEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQ-----ISRAHDVFADMLDSGC 321
Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
PNA T+ + V+A + ++ + QMK G PD
Sbjct: 322 APNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPD 359
Score = 64.7 bits (156), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 75/160 (46%), Gaps = 8/160 (5%)
Query: 75 QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
+++F +M+ G+ N + DAL + G A +FA + D G P+ + ++
Sbjct: 275 EKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRV 334
Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
+ AG+ ++ L+V+ +M G P+ TY LI+ A D N L +A K L M+ K
Sbjct: 335 HVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIE--AHCRDEN---LENAVKVLNTMIKK 389
Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
NA T+ +F + + V+ A + +M P+
Sbjct: 390 KCEVNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCEPN 429
Score = 57.8 bits (138), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 69/160 (43%), Gaps = 8/160 (5%)
Query: 75 QEIFHKMRTEGLTNNAVKMFDALS---KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
++F M G NA+ + + K G T + LQ++ Q+K G PD + + +IEA
Sbjct: 310 HDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEA 369
Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
+ + A++V M+ NA T+ + + + D N A + +M+
Sbjct: 370 HCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKRDVNG-----AHRMYSKMMEA 424
Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
PN TY + FV ++ D + ++M K P+
Sbjct: 425 KCEPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEPN 464
Score = 39.7 bits (91), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/138 (21%), Positives = 59/138 (42%), Gaps = 6/138 (4%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
+F + K + A ++++++ + P+ V + ++ + + L++ M
Sbjct: 401 IFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKE 460
Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV-GKGMRPNAGTYTAVFEAFVRAQ 211
V PN TY +L+ N +A K EMV K + P+ Y V RA
Sbjct: 461 VEPNVNTYRLLVTMFCGMGHWN-----NAYKLFKEMVEEKCLTPSLSLYEMVLAQLRRAG 515
Query: 212 KVDEARGLLQQMKAKGFV 229
++ + L+++M KG V
Sbjct: 516 QLKKHEELVEKMIQKGLV 533
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 70/175 (40%), Gaps = 18/175 (10%)
Query: 68 PTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQL-FAQIKDKGHMPDVVAHT 126
P D + +++ FH + + N DA+ LT AL L F+QI+ P VV
Sbjct: 59 PEDTQTVEK-FHSIIKDHYRKNPTSPNDAILNPSLTLHALSLDFSQIETSQVSPSVVR-- 115
Query: 127 AVIEAYASAGQG---KEALRVF----MRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
VIE S G ++L F R +P+ Y + + G D
Sbjct: 116 CVIEKCGSVRHGIPLHQSLAFFNWATSRDDYDHKSPHPYNEMIDLSGKVRQFDL------ 169
Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
A + M + + + T+T + +VRA EA +M+ G VPD+ A
Sbjct: 170 -AWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRMEDYGCVPDKIA 223
>sp|Q84J71|PP161_ARATH Pentatricopeptide repeat-containing protein At2g17670
OS=Arabidopsis thaliana GN=At2g17670 PE=2 SV=1
Length = 463
Score = 77.8 bits (190), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 72/140 (51%), Gaps = 5/140 (3%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
+ D + EA+ L +++ + G PD + +++ + + +G EA+ V+ +M G
Sbjct: 236 LIDNVCNSKNLREAMYLVSKLGNAGFKPDCFLYNTIMKGFCTLSKGSEAVGVYKKMKEEG 295
Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
V P+ TY LI GL+ A + +A+ YL MV G P+ TYT++ R +
Sbjct: 296 VEPDQITYNTLIFGLSKAGR-----VEEARMYLKTMVDAGYEPDTATYTSLMNGMCRKGE 350
Query: 213 VDEARGLLQQMKAKGFVPDE 232
A LL++M+A+G P++
Sbjct: 351 SLGALSLLEEMEARGCAPND 370
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 8/142 (5%)
Query: 86 LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVF 145
L N +K F LSK EA+ ++ ++K++G PD + + +I + AG+ +EA
Sbjct: 267 LYNTIMKGFCTLSKGS---EAVGVYKKMKEEGVEPDQITYNTLIFGLSKAGRVEEARMYL 323
Query: 146 MRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFE 205
M+ +G P+ TY L+ G+ + LG A L EM +G PN TY +
Sbjct: 324 KTMVDAGYEPDTATYTSLMNGMCRKGES----LG-ALSLLEEMEARGCAPNDCTYNTLLH 378
Query: 206 AFVRAQKVDEARGLLQQMKAKG 227
+A+ +D+ L + MK+ G
Sbjct: 379 GLCKARLMDKGMELYEMMKSSG 400
Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 10/144 (6%)
Query: 77 IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
++ KM+ EG+ + + + LSK G EA + D G+ PD +T+++
Sbjct: 287 VYKKMKEEGVEPDQITYNTLIFGLSKAGRVEEARMYLKTMVDAGYEPDTATYTSLMNGMC 346
Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV-GKG 192
G+ AL + M A G APN TY L+ GL A L D L EM+ G
Sbjct: 347 RKGESLGALSLLEEMEARGCAPNDCTYNTLLHGLCKAR------LMDKGMELYEMMKSSG 400
Query: 193 MRPNAGTYTAVFEAFVRAQKVDEA 216
++ + Y + + V++ KV EA
Sbjct: 401 VKLESNGYATLVRSLVKSGKVAEA 424
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 60/130 (46%), Gaps = 6/130 (4%)
Query: 105 EALQLFAQIKDKGHMP-DVVAHTAVIEAYASAGQGKEALRVFMRMLAS--GVAPNAYTYA 161
+A LF I +P D+ H +V+++Y S + +++F +L S P T+
Sbjct: 67 DAKSLFNSIAATSRIPLDLKFHNSVLQSYGSIAVVNDTVKLFQHILKSQPNFRPGRSTFL 126
Query: 162 VLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221
+L+ A D + + + + L MV G+ P+ T + +VDEA+ L++
Sbjct: 127 ILLSHACRAPDSS---ISNVHRVLNLMVNNGLEPDQVTTDIAVRSLCETGRVDEAKDLMK 183
Query: 222 QMKAKGFVPD 231
++ K PD
Sbjct: 184 ELTEKHSPPD 193
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 67/164 (40%), Gaps = 9/164 (5%)
Query: 73 NLQEIFHKMRTEGLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129
N+ + + M GL + V +L + G EA L ++ +K PD + ++
Sbjct: 142 NVHRVLNLMVNNGLEPDQVTTDIAVRSLCETGRVDEAKDLMKELTEKHSPPDTYTYNFLL 201
Query: 130 EAYASAGQGKEALRVFMRMLAS-GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
+ M V P+ ++ +LI + N+K L +A + ++
Sbjct: 202 KHLCKCKDLHVVYEFVDEMRDDFDVKPDLVSFTILIDNVC-----NSKNLREAMYLVSKL 256
Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
G +P+ Y + + F K EA G+ ++MK +G PD+
Sbjct: 257 GNAGFKPDCFLYNTIMKGFCTLSKGSEAVGVYKKMKEEGVEPDQ 300
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 77.4 bits (189), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 92/205 (44%), Gaps = 31/205 (15%)
Query: 76 EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
E+F +M GL N V + L + G A ++F ++ G PD++ ++ +++
Sbjct: 416 ELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGL 475
Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
G+ ++AL VF + S + P+ YTY ++I+G+ A + D + KG
Sbjct: 476 CKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGK-----VEDGWDLFCSLSLKG 530
Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP----------------DEKAVK 236
++PN YT + F R +EA L ++MK G +P D+ A
Sbjct: 531 VKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASA 590
Query: 237 EALIDKRGQGFRG-------VINIL 254
E + + R GF G VIN+L
Sbjct: 591 ELIKEMRSCGFVGDASTISMVINML 615
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 74/139 (53%), Gaps = 5/139 (3%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
+ DAL ++AL LF ++ +KG P+VV + ++I + G+ +A R+ M+
Sbjct: 261 IIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERK 320
Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
+ PN T++ LI A +G L +A+K EM+ + + P+ TY+++ F +
Sbjct: 321 INPNVVTFSALID--AFVKEGK---LVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDR 375
Query: 213 VDEARGLLQQMKAKGFVPD 231
+DEA+ + + M +K P+
Sbjct: 376 LDEAKHMFELMISKDCFPN 394
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 76/164 (46%), Gaps = 8/164 (4%)
Query: 75 QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
Q+IF KM ++G+ + + + D L K G +AL +F ++ PD+ + +IE
Sbjct: 450 QKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEG 509
Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
AG+ ++ +F + GV PN Y +I G + +A EM
Sbjct: 510 MCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKG-----LKEEADALFREMKED 564
Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAV 235
G PN+GTY + A +R + L+++M++ GFV D +
Sbjct: 565 GTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTI 608
Score = 71.6 bits (174), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 68/137 (49%), Gaps = 5/137 (3%)
Query: 95 DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
+ L K G AL L +++ DVV +T +I+A + +AL +F M G+
Sbjct: 228 NGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIR 287
Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
PN TY LI+ L N DA + L +M+ + + PN T++A+ +AFV+ K+
Sbjct: 288 PNVVTYNSLIRCLC-----NYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLV 342
Query: 215 EARGLLQQMKAKGFVPD 231
EA L +M + PD
Sbjct: 343 EAEKLYDEMIKRSIDPD 359
Score = 64.7 bits (156), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 67/139 (48%), Gaps = 5/139 (3%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
+ DA K+G EA +L+ ++ + PD+ ++++I + + EA +F M++
Sbjct: 331 LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKD 390
Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
PN TY LIKG AK + + + EM +G+ N TY + + +A
Sbjct: 391 CFPNVVTYNTLIKGFC-----KAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGD 445
Query: 213 VDEARGLLQQMKAKGFVPD 231
D A+ + ++M + G PD
Sbjct: 446 CDMAQKIFKKMVSDGVPPD 464
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 65/177 (36%), Gaps = 36/177 (20%)
Query: 100 DGLTH-----EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
+G H EA+ L Q+ + P+ V +I + EA+ + RM+A G
Sbjct: 158 NGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQ 217
Query: 155 PNAYTYAVLIKGLAAAAD------------------------------GNAKILGDAQKY 184
P+ +TY ++ GL D N K + DA
Sbjct: 218 PDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNL 277
Query: 185 LMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
EM KG+RPN TY ++ + +A LL M + P+ ALID
Sbjct: 278 FTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTF-SALID 333
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 63/136 (46%), Gaps = 6/136 (4%)
Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
AL + ++ G+ PD+V ++++ Y + EA+ + +M PN T+ LI
Sbjct: 134 ALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIH 193
Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
GL + +A + MV +G +P+ TY V + +D A LL++M+
Sbjct: 194 GLFLHNKAS-----EAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKME- 247
Query: 226 KGFVPDEKAVKEALID 241
KG + + + +ID
Sbjct: 248 KGKIEADVVIYTTIID 263
Score = 38.9 bits (89), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 5/127 (3%)
Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
+A+ LF ++ +P +V ++ A A + + + RM ++ + Y+Y +LI
Sbjct: 63 DAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILI 122
Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
+ L A L +M+ G P+ T +++ + +++ EA L+ QM
Sbjct: 123 NCFCRRSQ-----LPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMF 177
Query: 225 AKGFVPD 231
+ P+
Sbjct: 178 VMEYQPN 184
>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080,
mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2
SV=1
Length = 614
Score = 77.4 bits (189), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 77/165 (46%), Gaps = 5/165 (3%)
Query: 67 EPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
EP NL K + E + D+L K +AL LF ++ +KG PDV ++
Sbjct: 220 EPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYS 279
Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
++I + G+ +A R+ ML + PN T+ LI A L +A+K
Sbjct: 280 SLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGK-----LIEAEKLFD 334
Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
EM+ + + PN TY ++ F ++DEA+ + M +K +PD
Sbjct: 335 EMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPD 379
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 5/139 (3%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
+ DA +K+G EA +LF ++ + P++V + ++I + + EA ++F M++
Sbjct: 316 LIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKD 375
Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
P+ TY LI G AK + D + +M +G+ N TYT + F +A
Sbjct: 376 CLPDVVTYNTLINGFC-----KAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASD 430
Query: 213 VDEARGLLQQMKAKGFVPD 231
D A+ + +QM + G P+
Sbjct: 431 CDNAQMVFKQMVSDGVHPN 449
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 5/139 (3%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
+ + L K G AL L +++ DVV ++ VI++ +AL +F M G
Sbjct: 211 VINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKG 270
Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
+ P+ +TY+ LI L N DA + L +M+ + + PN T+ ++ +AF + K
Sbjct: 271 IRPDVFTYSSLISCLC-----NYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGK 325
Query: 213 VDEARGLLQQMKAKGFVPD 231
+ EA L +M + P+
Sbjct: 326 LIEAEKLFDEMIQRSIDPN 344
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 88/193 (45%), Gaps = 12/193 (6%)
Query: 67 EPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVV 123
+ +D N Q +F +M ++G+ N + + D L K+G +A+ +F ++ PD+
Sbjct: 427 QASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIY 486
Query: 124 AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQK 183
+ + E AG+ ++ +F + GV P+ Y +I G + +A
Sbjct: 487 TYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKG-----LKEEAYT 541
Query: 184 YLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA---VKEALI 240
++M G P++GTY + A +R + L+++M++ F D V + L
Sbjct: 542 LFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGDASTYGLVTDMLH 601
Query: 241 DKR-GQGFRGVIN 252
D R +GF V++
Sbjct: 602 DGRLDKGFLEVLS 614
Score = 61.2 bits (147), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 10/161 (6%)
Query: 75 QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
Q+IF M ++ + V + + K + ++LF + +G + + V +T +I
Sbjct: 365 QQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHG 424
Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
+ A A VF +M++ GV PN TY L+ GL N K+ + + E + K
Sbjct: 425 FFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCK----NGKL--EKAMVVFEYLQK 478
Query: 192 G-MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
M P+ TY + E +A KV++ L + KG PD
Sbjct: 479 SKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPD 519
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 10/137 (7%)
Query: 100 DGLTH-----EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
+G H EA+ L Q+ + G+ PD V T ++ + EA+ + RM+ G
Sbjct: 143 NGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQ 202
Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
P+ TY +I GL + + A L +M + + Y+ V ++ + + VD
Sbjct: 203 PDLVTYGAVINGLCKRGEPDL-----ALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVD 257
Query: 215 EARGLLQQMKAKGFVPD 231
+A L +M KG PD
Sbjct: 258 DALNLFTEMDNKGIRPD 274
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 9/141 (6%)
Query: 95 DALSKDGLTH----EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150
+ LS++ L H EA+ LF ++ P +V + ++ A A + + +M
Sbjct: 34 EKLSRNALLHLKLDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEI 93
Query: 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210
GV+ N YTY ++I L + L A L +M+ G P+ T ++ F
Sbjct: 94 LGVSHNLYTYNIMINCLCRRSQ-----LSFALAILGKMMKLGYGPSIVTLNSLLNGFCHG 148
Query: 211 QKVDEARGLLQQMKAKGFVPD 231
++ EA L+ QM G+ PD
Sbjct: 149 NRISEAVALVDQMVEMGYQPD 169
>sp|Q9LZP3|PP293_ARATH Pentatricopeptide repeat-containing protein At3g62470,
mitochondrial OS=Arabidopsis thaliana GN=At3g62470 PE=2
SV=1
Length = 599
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 72/136 (52%), Gaps = 6/136 (4%)
Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
EA +++ + D+G PD+VAH ++E + + +A+++F M + G PN +Y ++I
Sbjct: 316 EAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCPNVRSYTIMI 375
Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
+ + I +Y +MV G++P+A YT + F +K+D LL++M+
Sbjct: 376 RDFCKQSSMETAI-----EYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQ 430
Query: 225 AKGFVPDEKAVKEALI 240
KG PD K ALI
Sbjct: 431 EKGHPPDGKTYN-ALI 445
Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 11/138 (7%)
Query: 72 RNLQE---IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAH 125
RNL E I++ M +GL + V M + L + +A++LF +K KG P+V ++
Sbjct: 312 RNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCPNVRSY 371
Query: 126 TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185
T +I + + A+ F M+ SG+ P+A Y LI G G K L + L
Sbjct: 372 TIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGF-----GTQKKLDTVYELL 426
Query: 186 MEMVGKGMRPNAGTYTAV 203
EM KG P+ TY A+
Sbjct: 427 KEMQEKGHPPDGKTYNAL 444
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 64/120 (53%), Gaps = 5/120 (4%)
Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
+L ++++KGH PD + A+I+ A+ + A R++ +M+ + + P+ +T+ +++K
Sbjct: 424 ELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKSY 483
Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
A + +G A EM+ KG+ P+ +YT + + K EA L++M KG
Sbjct: 484 FMARNYE---MGRA--VWEEMIKKGICPDDNSYTVLIRGLIGEGKSREACRYLEEMLDKG 538
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 6/129 (4%)
Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
A+ +F +K V ++++ A GKEA +V L PN TY VL+
Sbjct: 248 AVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEA-QVLFDKLKERFTPNMMTYTVLLN 306
Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
G + L +A + +M+ +G++P+ + + E +R++K +A L MK+
Sbjct: 307 GWC-----RVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKS 361
Query: 226 KGFVPDEKA 234
KG P+ ++
Sbjct: 362 KGPCPNVRS 370
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 79/180 (43%), Gaps = 22/180 (12%)
Query: 49 TKSKLPPPYDPFKKVVDE-EPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEAL 107
T+ KL Y+ K++ ++ P D + + M + + +A ++++ + ++ +
Sbjct: 415 TQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKMIQNEIE---- 470
Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
P + ++++Y A + V+ M+ G+ P+ +Y VLI+GL
Sbjct: 471 ------------PSIHTFNMIMKSYFMARNYEMGRAVWEEMIKKGICPDDNSYTVLIRGL 518
Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
+G ++ +A +YL EM+ KGM+ Y F R + + L Q+ K G
Sbjct: 519 IG--EGKSR---EACRYLEEMLDKGMKTPLIDYNKFAADFHRGGQPEIFEELAQRAKFSG 573
>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
SV=1
Length = 730
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 73/160 (45%), Gaps = 8/160 (5%)
Query: 76 EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
E+ H MR +G N + D K G EA + ++ G P+ V +I A+
Sbjct: 410 EVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAF 469
Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
+ EA+ +F M G P+ YT+ LI GL + + A L +M+ +G
Sbjct: 470 CKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDE-----IKHALWLLRDMISEG 524
Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
+ N TY + AF+R ++ EAR L+ +M +G DE
Sbjct: 525 VVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDE 564
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 76/157 (48%), Gaps = 8/157 (5%)
Query: 77 IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
+ ++M +GL N V + A K+ EA+++F ++ KG PDV ++I
Sbjct: 446 VLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLC 505
Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
+ K AL + M++ GV N TY LI + + +A+K + EMV +G
Sbjct: 506 EVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGE-----IKEARKLVNEMVFQGS 560
Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
+ TY ++ + RA +VD+AR L ++M G P
Sbjct: 561 PLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAP 597
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 64/146 (43%), Gaps = 10/146 (6%)
Query: 91 VKMFDALSKDGLTHEALQ-----LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVF 145
+ +F+ L +TH L L + G +PDV + ++I Y G AL V
Sbjct: 353 IVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVL 412
Query: 146 MRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFE 205
M G PN Y+Y +L+ G + +A L EM G++PN + +
Sbjct: 413 HDMRNKGCKPNVYSYTILVDGFCKLGK-----IDEAYNVLNEMSADGLKPNTVGFNCLIS 467
Query: 206 AFVRAQKVDEARGLLQQMKAKGFVPD 231
AF + ++ EA + ++M KG PD
Sbjct: 468 AFCKEHRIPEAVEIFREMPRKGCKPD 493
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 10/140 (7%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS- 151
+ + L K G A LF +I P++V +I + + G+ +A V M+ S
Sbjct: 328 LMNGLCKIGRVDAAKDLFYRIPK----PEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSY 383
Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
G+ P+ TY LI G ++G A + L +M KG +PN +YT + + F +
Sbjct: 384 GIVPDVCTYNSLIYGYWKEG-----LVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLG 438
Query: 212 KVDEARGLLQQMKAKGFVPD 231
K+DEA +L +M A G P+
Sbjct: 439 KIDEAYNVLNEMSADGLKPN 458
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 82/158 (51%), Gaps = 8/158 (5%)
Query: 77 IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
+ M +EG+ N V + +A + G EA +L ++ +G D + + ++I+
Sbjct: 516 LLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLC 575
Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
AG+ +A +F +ML G AP+ + +LI GL + ++ +A ++ EMV +G
Sbjct: 576 RAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSG-----MVEEAVEFQKEMVLRGS 630
Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
P+ T+ ++ RA ++++ + ++++A+G PD
Sbjct: 631 TPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPD 668
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 64/133 (48%), Gaps = 5/133 (3%)
Query: 99 KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAY 158
K+GL AL++ +++KG P+V ++T +++ + G+ EA V M A G+ PN
Sbjct: 401 KEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTV 460
Query: 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218
+ LI + +A + EM KG +P+ T+ ++ ++ A
Sbjct: 461 GFNCLISAFCKEHR-----IPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALW 515
Query: 219 LLQQMKAKGFVPD 231
LL+ M ++G V +
Sbjct: 516 LLRDMISEGVVAN 528
Score = 62.0 bits (149), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/227 (19%), Positives = 102/227 (44%), Gaps = 13/227 (5%)
Query: 21 RITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKKVVDEEPTDP--RNLQEIF 78
+IT ++ L+ L+ S+ + +++ +D ++ ++ + + + + +
Sbjct: 75 KITPFQLYKLLELPLNVSTSMELFSWTGSQNGYRHSFDVYQVLIGKLGANGEFKTIDRLL 134
Query: 79 HKMRTEGLTNNAVKMFDALSKD----GLTHEALQLFAQIKD-KGHMPDVVAHTAVIEAYA 133
+M+ EG+ +F ++ +D G + +L ++++ P ++ V+E
Sbjct: 135 IQMKDEGIVFKE-SLFISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEILV 193
Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
S K A VF ML+ + P +T+ V++K A + + A L +M G
Sbjct: 194 SGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNE-----IDSALSLLRDMTKHGC 248
Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
PN+ Y + + + +V+EA LL++M G VPD + + ++
Sbjct: 249 VPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVIL 295
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 70/146 (47%), Gaps = 8/146 (5%)
Query: 75 QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
+ +F KM +G + + + + L + G+ EA++ ++ +G PD+V ++I
Sbjct: 584 RSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLING 643
Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
AG+ ++ L +F ++ A G+ P+ T+ L+ L + DA L E +
Sbjct: 644 LCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGG-----FVYDACLLLDEGIED 698
Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEAR 217
G PN T++ + ++ + + +D R
Sbjct: 699 GFVPNHRTWSILLQSIIPQETLDRRR 724
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 5/113 (4%)
Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
P + V++A+ + + AL + M G PN+ Y LI L+ N
Sbjct: 215 PTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVN----- 269
Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
+A + L EM G P+A T+ V + +++EA ++ +M +GF PD+
Sbjct: 270 EALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDD 322
>sp|Q9LER0|PP381_ARATH Pentatricopeptide repeat-containing protein At5g14770,
mitochondrial OS=Arabidopsis thaliana GN=At5g14770 PE=2
SV=2
Length = 940
Score = 77.0 bits (188), Expect = 1e-13, Method: Composition-based stats.
Identities = 42/139 (30%), Positives = 75/139 (53%), Gaps = 5/139 (3%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
+ D+L K + AL L++Q+ +G D+V +T +++ AG +EA + F +L
Sbjct: 302 LVDSLFKANIYRHALALYSQMVVRGIPVDLVVYTVLMDGLFKAGDLREAEKTFKMLLEDN 361
Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
PN TY L+ GL A D L A+ + +M+ K + PN TY+++ +V+
Sbjct: 362 QVPNVVTYTALVDGLCKAGD-----LSSAEFIITQMLEKSVIPNVVTYSSMINGYVKKGM 416
Query: 213 VDEARGLLQQMKAKGFVPD 231
++EA LL++M+ + VP+
Sbjct: 417 LEEAVSLLRKMEDQNVVPN 435
Score = 75.9 bits (185), Expect = 3e-13, Method: Composition-based stats.
Identities = 38/134 (28%), Positives = 71/134 (52%), Gaps = 5/134 (3%)
Query: 97 LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156
L K G+T +A + ++ +G +PD V +++ Y ++AL + M+ +G++PN
Sbjct: 690 LCKLGMTKKAAMVMGDMEARGFIPDTVTFNSLMHGYFVGSHVRKALSTYSVMMEAGISPN 749
Query: 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216
TY +I+GL+ +A ++ + K+L EM +GMRP+ TY A+ + + +
Sbjct: 750 VATYNTIIRGLS-----DAGLIKEVDKWLSEMKSRGMRPDDFTYNALISGQAKIGNMKGS 804
Query: 217 RGLLQQMKAKGFVP 230
+ +M A G VP
Sbjct: 805 MTIYCEMIADGLVP 818
Score = 71.6 bits (174), Expect = 6e-12, Method: Composition-based stats.
Identities = 48/180 (26%), Positives = 81/180 (45%), Gaps = 21/180 (11%)
Query: 72 RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
R + M G++ N + LS GL E + +++K +G PD + A+
Sbjct: 732 RKALSTYSVMMEAGISPNVATYNTIIRGLSDAGLIKEVDKWLSEMKSRGMRPDDFTYNAL 791
Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
I A G K ++ ++ M+A G+ P TY VLI A N + A++ L EM
Sbjct: 792 ISGQAKIGNMKGSMTIYCEMIADGLVPKTSTYNVLISEFA-----NVGKMLQARELLKEM 846
Query: 189 VGKGMRPNAGTYTAVFEAFV------------RAQKVDEARGLLQQM-KAKGFVPDEKAV 235
+G+ PN TY + +A + EA+GLL++M + KG++P + +
Sbjct: 847 GKRGVSPNTSTYCTMISGLCKLCTHPDVEWNKKAMYLAEAKGLLKEMVEEKGYIPCNQTI 906
Score = 63.5 bits (153), Expect = 1e-09, Method: Composition-based stats.
Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 8/166 (4%)
Query: 70 DPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
D R ++ F + + N V + D L K G A + Q+ +K +P+VV ++
Sbjct: 346 DLREAEKTFKMLLEDNQVPNVVTYTALVDGLCKAGDLSSAEFIITQMLEKSVIPNVVTYS 405
Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
++I Y G +EA+ + +M V PN +TY +I GL A G ++ + K
Sbjct: 406 SMINGYVKKGMLEEAVSLLRKMEDQNVVPNGFTYGTVIDGLFKA--GKEEMAIELSK--- 460
Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
EM G+ N A+ R ++ E +GL++ M +KG D+
Sbjct: 461 EMRLIGVEENNYILDALVNHLKRIGRIKEVKGLVKDMVSKGVTLDQ 506
Score = 45.4 bits (106), Expect = 4e-04, Method: Composition-based stats.
Identities = 31/157 (19%), Positives = 70/157 (44%), Gaps = 8/157 (5%)
Query: 78 FHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134
+ MR +G+ + M ++ K G + L+L+ ++K G P +++ V+
Sbjct: 563 YKGMREKGIEPDIATFNIMMNSQRKQGDSEGILKLWDKMKSCGIKPSLMSCNIVVGMLCE 622
Query: 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194
G+ +EA+ + +M+ + PN TY + + + +A K ++ G++
Sbjct: 623 NGKMEEAIHILNQMMLMEIHPNLTTYRIFLDTSSKHKRADAIF-----KTHETLLSYGIK 677
Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
+ Y + + +A ++ M+A+GF+PD
Sbjct: 678 LSRQVYNTLIATLCKLGMTKKAAMVMGDMEARGFIPD 714
Score = 42.4 bits (98), Expect = 0.004, Method: Composition-based stats.
Identities = 34/150 (22%), Positives = 57/150 (38%), Gaps = 40/150 (26%)
Query: 117 GHMPDVVAHTAVIEAYASAGQGKE-----------------------------------A 141
G PDVV +++I G+ E A
Sbjct: 256 GFDPDVVTFSSIINRLCKGGKVLEGGLLLREMEEMSVYPNHVTYTTLVDSLFKANIYRHA 315
Query: 142 LRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYT 201
L ++ +M+ G+ + Y VL+ GL A D L +A+K ++ PN TYT
Sbjct: 316 LALYSQMVVRGIPVDLVVYTVLMDGLFKAGD-----LREAEKTFKMLLEDNQVPNVVTYT 370
Query: 202 AVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
A+ + +A + A ++ QM K +P+
Sbjct: 371 ALVDGLCKAGDLSSAEFIITQMLEKSVIPN 400
Score = 41.6 bits (96), Expect = 0.006, Method: Composition-based stats.
Identities = 38/146 (26%), Positives = 59/146 (40%), Gaps = 14/146 (9%)
Query: 87 TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFM 146
T++ K DA+ K THE L + IK + + +I G K+A V
Sbjct: 654 TSSKHKRADAIFK---THETLLSYG-IKLSRQV-----YNTLIATLCKLGMTKKAAMVMG 704
Query: 147 RMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEA 206
M A G P+ T+ L+ G + + A M+ G+ PN TY +
Sbjct: 705 DMEARGFIPDTVTFNSLMHGYFVGSH-----VRKALSTYSVMMEAGISPNVATYNTIIRG 759
Query: 207 FVRAQKVDEARGLLQQMKAKGFVPDE 232
A + E L +MK++G PD+
Sbjct: 760 LSDAGLIKEVDKWLSEMKSRGMRPDD 785
>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
Length = 729
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 68/139 (48%), Gaps = 5/139 (3%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
M +AL KDG + +Q+++KG PD+V + +I AY+S G +EA + M G
Sbjct: 241 MVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKG 300
Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
+P YTY +I GL A++ EM+ G+ P++ TY ++ +
Sbjct: 301 FSPGVYTYNTVINGLCKHGKYER-----AKEVFAEMLRSGLSPDSTTYRSLLMEACKKGD 355
Query: 213 VDEARGLLQQMKAKGFVPD 231
V E + M+++ VPD
Sbjct: 356 VVETEKVFSDMRSRDVVPD 374
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 85/182 (46%), Gaps = 10/182 (5%)
Query: 50 KSKLPPPYDPFKKVVDE--EPTDPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTH 104
+S L P ++ ++ E + D +++F MR+ + + V M ++ G
Sbjct: 333 RSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLD 392
Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
+AL F +K+ G +PD V +T +I+ Y G A+ + ML G A + TY ++
Sbjct: 393 KALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTIL 452
Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
GL K+LG+A K EM + + P++ T T + + + + A L Q+MK
Sbjct: 453 HGLC-----KRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMK 507
Query: 225 AK 226
K
Sbjct: 508 EK 509
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 68/139 (48%), Gaps = 5/139 (3%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
+ D K G A++LF ++K+K DVV + +++ + G A ++ M++
Sbjct: 486 LIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKE 545
Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
+ P +Y++L+ L + L +A + EM+ K ++P ++ + + R+
Sbjct: 546 ILPTPISYSILVNALCSKGH-----LAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGN 600
Query: 213 VDEARGLLQQMKAKGFVPD 231
+ L++M ++GFVPD
Sbjct: 601 ASDGESFLEKMISEGFVPD 619
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 74/173 (42%), Gaps = 32/173 (18%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
+ +AL G EA +++ ++ K P V+ ++I+ Y +G + +M++ G
Sbjct: 556 LVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEG 615
Query: 153 VAPNAYTYAVLIKGLA-----AAADG-------------------NAKILG--------D 180
P+ +Y LI G + A G N+ + G +
Sbjct: 616 FVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKE 675
Query: 181 AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK 233
A+ L +M+ +G+ P+ TYT + FV + EA + +M +GF PD+K
Sbjct: 676 AEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSPDDK 728
Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 77/170 (45%), Gaps = 9/170 (5%)
Query: 75 QEIFHKMRTEGLTNNAVKMFDAL---SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
+E+F +M GL+ ++ L K G E ++F+ ++ + +PD+V ++++
Sbjct: 325 KEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSL 384
Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
+ +G +AL F + +G+ P+ Y +LI+G ++ A EM+ +
Sbjct: 385 FTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKG-----MISVAMNLRNEMLQQ 439
Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241
G + TY + + + + EA L +M + PD + LID
Sbjct: 440 GCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLT-ILID 488
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 73/178 (41%), Gaps = 8/178 (4%)
Query: 72 RNLQEIFHKMRTEGLT---NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
R E F +R++G T + + +L + G A ++ +I G +V +
Sbjct: 182 REAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIM 241
Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
+ A G+ ++ ++ GV P+ TY LI ++ ++ +A + + M
Sbjct: 242 VNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKG-----LMEEAFELMNAM 296
Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246
GKG P TY V + K + A+ + +M G PD + L++ +G
Sbjct: 297 PGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKG 354
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/139 (20%), Positives = 57/139 (41%), Gaps = 5/139 (3%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
+ + L K G A ++FA++ G PD + +++ G E +VF M +
Sbjct: 311 VINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRD 370
Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
V P+ ++ ++ + + L A Y + G+ P+ YT + + + R
Sbjct: 371 VVPDLVCFSSMMSLFTRSGN-----LDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGM 425
Query: 213 VDEARGLLQQMKAKGFVPD 231
+ A L +M +G D
Sbjct: 426 ISVAMNLRNEMLQQGCAMD 444
>sp|Q9LUR2|PP238_ARATH Putative pentatricopeptide repeat-containing protein At3g16710,
mitochondrial OS=Arabidopsis thaliana GN=At3g16710 PE=3
SV=1
Length = 507
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 77/164 (46%), Gaps = 8/164 (4%)
Query: 76 EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
+IF++M +G+ N + + G A ++F Q+ + PD+ + +++
Sbjct: 349 KIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGL 408
Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
G+ ++AL +F M + N TY ++I+G+ + DA + KG
Sbjct: 409 CCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGK-----VEDAFDLFCSLFSKG 463
Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK 236
M+PN TYT + F R + EA L ++MK GF+P+E K
Sbjct: 464 MKPNVITYTTMISGFCRRGLIHEADSLFKKMKEDGFLPNESVYK 507
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 65/137 (47%), Gaps = 10/137 (7%)
Query: 100 DGLTH-----EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154
+G H +A+ LF QI G P+VV +T +I A+ +F +M +G
Sbjct: 161 NGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSR 220
Query: 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214
PN TY L+ GL GDA L +M+ + + PN T+TA+ +AFV+ K+
Sbjct: 221 PNVVTYNALVTGLCEIGR-----WGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLM 275
Query: 215 EARGLLQQMKAKGFVPD 231
EA+ L M PD
Sbjct: 276 EAKELYNVMIQMSVYPD 292
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 76/159 (47%), Gaps = 8/159 (5%)
Query: 76 EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
E+F++M T G N V + L + G +A L + + P+V+ TA+I+A+
Sbjct: 209 ELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAF 268
Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
G+ EA ++ M+ V P+ +TY LI GL +L +A++ M G
Sbjct: 269 VKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYG-----LLDEARQMFYLMERNG 323
Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
PN YT + F ++++V++ + +M KG V +
Sbjct: 324 CYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVAN 362
Score = 61.2 bits (147), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 61/139 (43%), Gaps = 5/139 (3%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
+ DA K G EA +L+ + PDV + ++I G EA ++F M +G
Sbjct: 264 LIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNG 323
Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
PN Y LI G +K + D K EM KG+ N TYT + + + +
Sbjct: 324 CYPNEVIYTTLIHGFC-----KSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGR 378
Query: 213 VDEARGLLQQMKAKGFVPD 231
D A+ + QM ++ PD
Sbjct: 379 PDVAQEVFNQMSSRRAPPD 397
Score = 60.8 bits (146), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
+ + L GL EA Q+F ++ G P+ V +T +I + + + ++ +++F M G
Sbjct: 299 LINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKG 358
Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
V N TY VLI+G + AQ+ +M + P+ TY + + K
Sbjct: 359 VVANTITYTVLIQGYCLVGRPDV-----AQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGK 413
Query: 213 VDEARGLLQQMKAK 226
V++A + + M+ +
Sbjct: 414 VEKALMIFEYMRKR 427
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 68/159 (42%), Gaps = 8/159 (5%)
Query: 77 IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
+F ++ G N V + L K+ + A++LF Q+ G P+VV + A++
Sbjct: 175 LFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLC 234
Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
G+ +A + M+ + PN T+ LI L +A++ M+ +
Sbjct: 235 EIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGK-----LMEAKELYNVMIQMSV 289
Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
P+ TY ++ +DEAR + M+ G P+E
Sbjct: 290 YPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNE 328
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/128 (19%), Positives = 59/128 (46%), Gaps = 5/128 (3%)
Query: 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
++AL LF ++ +P ++ T ++ A + + +F +M G+ P T ++
Sbjct: 65 NDALDLFTRMVHSRPLPSIIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCNIV 124
Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
+ + ++ A +L +M+ G P+ T+T++ + ++++A L Q+
Sbjct: 125 MHCVCLSSQP-----CRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQI 179
Query: 224 KAKGFVPD 231
GF P+
Sbjct: 180 LGMGFKPN 187
>sp|Q9C6S6|PPR67_ARATH Putative pentatricopeptide repeat-containing protein At1g31840
OS=Arabidopsis thaliana GN=At1g31840 PE=2 SV=2
Length = 840
Score = 76.6 bits (187), Expect = 2e-13, Method: Composition-based stats.
Identities = 37/158 (23%), Positives = 80/158 (50%), Gaps = 8/158 (5%)
Query: 77 IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
++ +M +G++ N V + L +DG +EA ++ QI +G P +V ++++I+ +
Sbjct: 378 VYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSLIDGFC 437
Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
G + ++ M+ G P+ Y VL+ GL+ ++ A ++ ++M+G+ +
Sbjct: 438 KCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQG-----LMLHAMRFSVKMLGQSI 492
Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
R N + ++ + + R + DEA + + M G PD
Sbjct: 493 RLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYGIKPD 530
Score = 75.1 bits (183), Expect = 5e-13, Method: Composition-based stats.
Identities = 46/159 (28%), Positives = 78/159 (49%), Gaps = 8/159 (5%)
Query: 76 EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
++F M G+ + + + D K G+ +LF+Q KG DVV ++ I+ Y
Sbjct: 307 DLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMGHKLFSQALHKGVKLDVVVFSSTIDVY 366
Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
+G A V+ RML G++PN TY +LIKGL DG + +A +++ +G
Sbjct: 367 VKSGDLATASVVYKRMLCQGISPNVVTYTILIKGL--CQDGR---IYEAFGMYGQILKRG 421
Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
M P+ TY+++ + F + + L + M G+ PD
Sbjct: 422 MEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPD 460
Score = 56.2 bits (134), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 5/126 (3%)
Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
+A + F + + PD+V + +I Y S + EA R+F + + PN T +LI
Sbjct: 619 DASKFFNNLIEGKMEPDIVTYNTMICGYCSLRRLDEAERIFELLKVTPFGPNTVTLTILI 678
Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
L D + I + M KG +PNA TY + + F ++ ++ + L ++M+
Sbjct: 679 HVLCKNNDMDGAI-----RMFSIMAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEMQ 733
Query: 225 AKGFVP 230
KG P
Sbjct: 734 EKGISP 739
Score = 53.9 bits (128), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 5/127 (3%)
Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
EA ++F +K P+ V T +I A+R+F M G PNA TY L+
Sbjct: 654 EAERIFELLKVTPFGPNTVTLTILIHVLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCLM 713
Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
+ + D + + K EM KG+ P+ +Y+ + + + +VDEA + Q
Sbjct: 714 DWFSKSVD-----IEGSFKLFEEMQEKGISPSIVSYSIIIDGLCKRGRVDEATNIFHQAI 768
Query: 225 AKGFVPD 231
+PD
Sbjct: 769 DAKLLPD 775
Score = 52.8 bits (125), Expect = 2e-06, Method: Composition-based stats.
Identities = 40/157 (25%), Positives = 63/157 (40%), Gaps = 30/157 (19%)
Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
EAL++F + G PDV T V+ G+ +EAL +F RM G+ P+A Y LI
Sbjct: 514 EALKVFRLMGIYGIKPDVATFTTVMRVSIMEGRLEEALFLFFRMFKMGLEPDALAYCTLI 573
Query: 165 KGL----------------------AAAADGNAKI--------LGDAQKYLMEMVGKGMR 194
A A N I + DA K+ ++ M
Sbjct: 574 DAFCKHMKPTIGLQLFDLMQRNKISADIAVCNVVIHLLFKCHRIEDASKFFNNLIEGKME 633
Query: 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
P+ TY + + +++DEA + + +K F P+
Sbjct: 634 PDIVTYNTMICGYCSLRRLDEAERIFELLKVTPFGPN 670
Score = 50.8 bits (120), Expect = 8e-06, Method: Composition-based stats.
Identities = 30/161 (18%), Positives = 73/161 (45%), Gaps = 8/161 (4%)
Query: 75 QEIFHKMRTEGLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
+ IF ++ N V + L K+ A+++F+ + +KG P+ V + +++
Sbjct: 656 ERIFELLKVTPFGPNTVTLTILIHVLCKNNDMDGAIRMFSIMAEKGSKPNAVTYGCLMDW 715
Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
++ + + + ++F M G++P+ +Y+++I GL + +A + +
Sbjct: 716 FSKSVDIEGSFKLFEEMQEKGISPSIVSYSIIIDGLCKRGR-----VDEATNIFHQAIDA 770
Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232
+ P+ Y + + + ++ EA L + M G PD+
Sbjct: 771 KLLPDVVAYAILIRGYCKVGRLVEAALLYEHMLRNGVKPDD 811
Score = 46.2 bits (108), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 5/120 (4%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
+ D LSK GL A++ ++ + +VV ++I+ + + EAL+VF M G
Sbjct: 467 LVDGLSKQGLMLHAMRFSVKMLGQSIRLNVVVFNSLIDGWCRLNRFDEALKVFRLMGIYG 526
Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
+ P+ T+ +++ + +G L +A M G+ P+A Y + +AF + K
Sbjct: 527 IKPDVATFTTVMR--VSIMEGR---LEEALFLFFRMFKMGLEPDALAYCTLIDAFCKHMK 581
Score = 33.1 bits (74), Expect = 1.9, Method: Composition-based stats.
Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 6/110 (5%)
Query: 122 VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDA 181
V AH V++A G+ +AL ++ G + ++KGL+ + A
Sbjct: 217 VSAHGFVLDALFCKGEVTKALDFHRLVMERGFRVGIVSCNKVLKGLSVDQ------IEVA 270
Query: 182 QKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
+ L ++ G PN T+ + F + ++D A L + M+ +G PD
Sbjct: 271 SRLLSLVLDCGPAPNVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPD 320
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850,
chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 76.3 bits (186), Expect = 2e-13, Method: Composition-based stats.
Identities = 51/163 (31%), Positives = 81/163 (49%), Gaps = 8/163 (4%)
Query: 72 RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128
R ++IF+ ++ GL ++V M SK G EA++L +++ + G PDV+ ++
Sbjct: 485 REAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSL 544
Query: 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188
I A + EA ++FMRM + P TY L+ GL N KI +A + M
Sbjct: 545 INTLYKADRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGK----NGKI-QEAIELFEGM 599
Query: 189 VGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
V KG PN T+ +F+ + +V A +L +M G VPD
Sbjct: 600 VQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPD 642
Score = 75.1 bits (183), Expect = 5e-13, Method: Composition-based stats.
Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 6/140 (4%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
+ D LSK G +EA QLF + D G P+ + +I + AG+ A +F RM+ G
Sbjct: 897 LIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEG 956
Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
V P+ TY+VL+ L + + Y E+ G+ P+ Y + ++ +
Sbjct: 957 VRPDLKTYSVLVDCLCMVGR-----VDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHR 1011
Query: 213 VDEARGLLQQMK-AKGFVPD 231
++EA L +MK ++G PD
Sbjct: 1012 LEEALVLFNEMKTSRGITPD 1031
Score = 72.0 bits (175), Expect = 4e-12, Method: Composition-based stats.
Identities = 44/158 (27%), Positives = 79/158 (50%), Gaps = 8/158 (5%)
Query: 76 EIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
E+F M + G+ A + D K G + AL+ F ++K KG P++VA A + +
Sbjct: 419 ELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSL 478
Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
A AG+ +EA ++F + G+ P++ TY +++K + + + +A K L EM+ G
Sbjct: 479 AKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGE-----IDEAIKLLSEMMENG 533
Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
P+ ++ +A +VDEA + +MK P
Sbjct: 534 CEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKP 571
Score = 71.2 bits (173), Expect = 6e-12, Method: Composition-based stats.
Identities = 48/159 (30%), Positives = 76/159 (47%), Gaps = 9/159 (5%)
Query: 77 IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
+F +M EG+ + + D L G E L F ++K+ G PDVV + +I
Sbjct: 948 LFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLG 1007
Query: 134 SAGQGKEALRVFMRMLAS-GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
+ + +EAL +F M S G+ P+ YTY LI L G A ++ +A K E+ G
Sbjct: 1008 KSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNL-----GIAGMVEEAGKIYNEIQRAG 1062
Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
+ PN T+ A+ + + K + A + Q M GF P+
Sbjct: 1063 LEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPN 1101
Score = 70.9 bits (172), Expect = 8e-12, Method: Composition-based stats.
Identities = 48/168 (28%), Positives = 76/168 (45%), Gaps = 8/168 (4%)
Query: 75 QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
+E+F KM+T + V + D S + Q +++++ GH+PDVV T +++A
Sbjct: 313 KEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDA 372
Query: 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191
AG EA M G+ PN +TY LI GL L DA + M
Sbjct: 373 LCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLL-----RVHRLDDALELFGNMESL 427
Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239
G++P A TY + + ++ A ++MK KG P+ A +L
Sbjct: 428 GVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASL 475
Score = 68.6 bits (166), Expect = 5e-11, Method: Composition-based stats.
Identities = 44/162 (27%), Positives = 74/162 (45%), Gaps = 9/162 (5%)
Query: 74 LQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQI-KDKGHMPDVVAHTAVI 129
L E++ +M T N + + L K G +AL L+ + D+ P + +I
Sbjct: 839 LFELYKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLI 898
Query: 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189
+ + +G+ EA ++F ML G PN Y +LI G A + +A A MV
Sbjct: 899 DGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADA-----ACALFKRMV 953
Query: 190 GKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
+G+RP+ TY+ + + +VDE +++K G PD
Sbjct: 954 KEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPD 995
Score = 65.5 bits (158), Expect = 4e-10, Method: Composition-based stats.
Identities = 42/163 (25%), Positives = 75/163 (46%), Gaps = 9/163 (5%)
Query: 75 QEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA 131
Q++F ++++ G + + DA K G E +L+ ++ + + H VI
Sbjct: 805 QDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISG 864
Query: 132 YASAGQGKEALRVFMRMLAS-GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190
AG +AL ++ +++ +P A TY LI GL+ + L +A++ M+
Sbjct: 865 LVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGR-----LYEAKQLFEGMLD 919
Query: 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK 233
G RPN Y + F +A + D A L ++M +G PD K
Sbjct: 920 YGCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLK 962
Score = 64.3 bits (155), Expect = 8e-10, Method: Composition-based stats.
Identities = 41/145 (28%), Positives = 74/145 (51%), Gaps = 5/145 (3%)
Query: 87 TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFM 146
TN + +F +LS G +A ++++ G + + ++ +I + EA+ V+
Sbjct: 153 TNTYLTIFKSLSVKGGLKQAPYALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYR 212
Query: 147 RMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEA 206
RM+ G P+ TY+ L+ GL D ++ ++G L EM G++PN T+T
Sbjct: 213 RMILEGFRPSLQTYSSLMVGLGKRRDIDS-VMG----LLKEMETLGLKPNVYTFTICIRV 267
Query: 207 FVRAQKVDEARGLLQQMKAKGFVPD 231
RA K++EA +L++M +G PD
Sbjct: 268 LGRAGKINEAYEILKRMDDEGCGPD 292
Score = 62.4 bits (150), Expect = 3e-09, Method: Composition-based stats.
Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 8/165 (4%)
Query: 70 DPRNLQEIFHKMRTEGLTNNAVKM---FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT 126
D ++ + +M T GL N L + G +EA ++ ++ D+G PDVV +T
Sbjct: 238 DIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYT 297
Query: 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
+I+A +A + A VF +M P+ TY L+ + D L +++
Sbjct: 298 VLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRD-----LDSVKQFWS 352
Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
EM G P+ T+T + +A +A EA L M+ +G +P+
Sbjct: 353 EMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPN 397
Score = 58.9 bits (141), Expect = 4e-08, Method: Composition-based stats.
Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 5/127 (3%)
Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
+AL+LF ++ G P + I+ Y +G AL F +M G+APN +
Sbjct: 416 DALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASL 475
Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
LA A +A++ + G+ P++ TY + + + + ++DEA LL +M
Sbjct: 476 YSLAKAGRDR-----EAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMM 530
Query: 225 AKGFVPD 231
G PD
Sbjct: 531 ENGCEPD 537
Score = 55.1 bits (131), Expect = 4e-07, Method: Composition-based stats.
Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 9/127 (7%)
Query: 78 FHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIK-DKGHMPDVVAHTAVIEAYA 133
F +++ GL + V + + L K EAL LF ++K +G PD+ + ++I
Sbjct: 984 FKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLG 1043
Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
AG +EA +++ + +G+ PN +T+ LI+G + + A MV G
Sbjct: 1044 IAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPE-----HAYAVYQTMVTGGF 1098
Query: 194 RPNAGTY 200
PN GTY
Sbjct: 1099 SPNTGTY 1105
Score = 52.4 bits (124), Expect = 3e-06, Method: Composition-based stats.
Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 5/139 (3%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
M +AL DG E +F ++ + D + + ++ + G K+A +M G
Sbjct: 124 MLEALRVDGKLEEMAYVFDLMQKRIIKRDTNTYLTIFKSLSVKGGLKQAPYALRKMREFG 183
Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
NAY+Y LI L ++ +A + M+ +G RP+ TY+++ + +
Sbjct: 184 FVLNAYSYNGLIHLLL-----KSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRD 238
Query: 213 VDEARGLLQQMKAKGFVPD 231
+D GLL++M+ G P+
Sbjct: 239 IDSVMGLLKEMETLGLKPN 257
Score = 47.0 bits (110), Expect = 1e-04, Method: Composition-based stats.
Identities = 34/144 (23%), Positives = 66/144 (45%), Gaps = 9/144 (6%)
Query: 76 EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
++F +M+ L V + L K+G EA++LF + KG P+ + + +
Sbjct: 559 KMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCL 618
Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
+ AL++ +M+ G P+ +TY +I GL +G K +A + +M K
Sbjct: 619 CKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFGL--VKNGQVK---EAMCFFHQM-KKL 672
Query: 193 MRPNAGTYTAVFEAFVRAQKVDEA 216
+ P+ T + V+A +++A
Sbjct: 673 VYPDFVTLCTLLPGVVKASLIEDA 696
Score = 44.3 bits (103), Expect = 0.001, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 77 IFHKMRT-EGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
+F++M+T G+T + + L G+ EA +++ +I+ G P+V A+I Y
Sbjct: 1018 LFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGY 1077
Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
+ +G+ + A V+ M+ G +PN TY L
Sbjct: 1078 SLSGKPEHAYAVYQTMVTGGFSPNTGTYEQL 1108
Score = 38.1 bits (87), Expect = 0.058, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211
GV P TY +LI GL A ++ AQ +++ G P+ TY + +A+ ++
Sbjct: 780 GVQPKLPTYNLLIGGLL-----EADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSG 834
Query: 212 KVDEARGLLQQM 223
K+DE L ++M
Sbjct: 835 KIDELFELYKEM 846
Score = 31.6 bits (70), Expect = 5.5, Method: Composition-based stats.
Identities = 42/193 (21%), Positives = 75/193 (38%), Gaps = 37/193 (19%)
Query: 96 ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMR-------- 147
L K+G EA+ F Q+K K PD V ++ A ++A ++
Sbjct: 652 GLVKNGQVKEAMCFFHQMK-KLVYPDFVTLCTLLPGVVKASLIEDAYKIITNFLYNCADQ 710
Query: 148 ------------MLASGVAPNAYTYAVLIKGLAAAADGNAKILG-----------DAQKY 184
+LA NA +++ + DG++ ++ +
Sbjct: 711 PANLFWEDLIGSILAEAGIDNAVSFSERLVANGICRDGDSILVPIIRYSCKHNNVSGART 770
Query: 185 LMEMVGK--GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDK 242
L E K G++P TY + + A ++ A+ + Q+K+ G +PD A L+D
Sbjct: 771 LFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPD-VATYNFLLDA 829
Query: 243 RGQGFRGVINILF 255
G+ G I+ LF
Sbjct: 830 YGKS--GKIDELF 840
>sp|Q9LEQ7|PP382_ARATH Pentatricopeptide repeat-containing protein At5g14820,
mitochondrial OS=Arabidopsis thaliana GN=At5g14820 PE=2
SV=1
Length = 598
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 68/129 (52%), Gaps = 5/129 (3%)
Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
EA +++ + D G PD+VAH ++E + + +A+++F M + G PN +Y ++I
Sbjct: 315 EAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMI 374
Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
+ + I +Y +MV G++P+A YT + F +K+D LL++M+
Sbjct: 375 RDFCKQSSMETAI-----EYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQ 429
Query: 225 AKGFVPDEK 233
KG PD K
Sbjct: 430 EKGHPPDGK 438
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 66/138 (47%), Gaps = 11/138 (7%)
Query: 72 RNLQE---IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAH 125
RNL E I++ M GL + V M + L + +A++LF +K KG P+V ++
Sbjct: 311 RNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSY 370
Query: 126 TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185
T +I + + A+ F M+ SG+ P+A Y LI G G K L + L
Sbjct: 371 TIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGF-----GTQKKLDTVYELL 425
Query: 186 MEMVGKGMRPNAGTYTAV 203
EM KG P+ TY A+
Sbjct: 426 KEMQEKGHPPDGKTYNAL 443
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 63/120 (52%), Gaps = 5/120 (4%)
Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
+L ++++KGH PD + A+I+ A+ + R++ +M+ + + P+ +T+ +++K
Sbjct: 423 ELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSY 482
Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
A + +G A EM+ KG+ P+ +YT + + K EA L++M KG
Sbjct: 483 FVARNYE---MGRA--VWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKG 537
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 6/129 (4%)
Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
A+ +F +K V ++++ A GKEA +V L PN TY VL+
Sbjct: 247 AVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEA-QVLFDKLKERFTPNMMTYTVLLN 305
Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
G + L +A + +M+ G++P+ + + E +R+ K +A L MK+
Sbjct: 306 GWCRVRN-----LIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKS 360
Query: 226 KGFVPDEKA 234
KG P+ ++
Sbjct: 361 KGPCPNVRS 369
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/180 (20%), Positives = 79/180 (43%), Gaps = 22/180 (12%)
Query: 49 TKSKLPPPYDPFKKVVDE-EPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEAL 107
T+ KL Y+ K++ ++ P D + + M + + + ++++ + ++ +
Sbjct: 414 TQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIE---- 469
Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
P + ++++Y A + V+ M+ G+ P+ +Y VLI+GL
Sbjct: 470 ------------PSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGL 517
Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
+ +G ++ +A +YL EM+ KGM+ Y F R + + L Q+ K G
Sbjct: 518 IS--EGKSR---EACRYLEEMLDKGMKTPLIDYNKFAADFHRGGQPEIFEELAQRAKFSG 572
>sp|Q3EAF8|PP294_ARATH Pentatricopeptide repeat-containing protein At3g62540,
mitochondrial OS=Arabidopsis thaliana GN=At3g62540 PE=2
SV=1
Length = 599
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 68/129 (52%), Gaps = 5/129 (3%)
Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
EA +++ + D G PD+VAH ++E + + +A+++F M + G PN +Y ++I
Sbjct: 316 EAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMI 375
Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
+ + I +Y +MV G++P+A YT + F +K+D LL++M+
Sbjct: 376 RDFCKQSSMETAI-----EYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELLKEMQ 430
Query: 225 AKGFVPDEK 233
KG PD K
Sbjct: 431 EKGHPPDGK 439
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 66/138 (47%), Gaps = 11/138 (7%)
Query: 72 RNLQE---IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAH 125
RNL E I++ M GL + V M + L + +A++LF +K KG P+V ++
Sbjct: 312 RNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSY 371
Query: 126 TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185
T +I + + A+ F M+ SG+ P+A Y LI G G K L + L
Sbjct: 372 TIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGF-----GTQKKLDTVYELL 426
Query: 186 MEMVGKGMRPNAGTYTAV 203
EM KG P+ TY A+
Sbjct: 427 KEMQEKGHPPDGKTYNAL 444
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 63/120 (52%), Gaps = 5/120 (4%)
Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
+L ++++KGH PD + A+I+ A+ + R++ +M+ + + P+ +T+ +++K
Sbjct: 424 ELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSY 483
Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
A + +G A EM+ KG+ P+ +YT + + K EA L++M KG
Sbjct: 484 FVARNYE---MGRA--VWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKG 538
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 6/129 (4%)
Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
A+ +F +K V ++++ A GKEA +V L PN TY VL+
Sbjct: 248 AVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEA-QVLFDKLKERFTPNMMTYTVLLN 306
Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
G + L +A + +M+ G++P+ + + E +R+ K +A L MK+
Sbjct: 307 GWC-----RVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKS 361
Query: 226 KGFVPDEKA 234
KG P+ ++
Sbjct: 362 KGPCPNVRS 370
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/180 (20%), Positives = 79/180 (43%), Gaps = 22/180 (12%)
Query: 49 TKSKLPPPYDPFKKVVDE-EPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEAL 107
T+ KL Y+ K++ ++ P D + + M + + + ++++ + ++ +
Sbjct: 415 TQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIE---- 470
Query: 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167
P + ++++Y A + V+ M+ G+ P+ +Y VLI+GL
Sbjct: 471 ------------PSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGL 518
Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
+ +G ++ +A +YL EM+ KGM+ Y F R + + L Q+ K G
Sbjct: 519 IS--EGKSR---EACRYLEEMLDKGMKTPLIDYNKFAADFHRGGQPEIFEELAQRAKFSG 573
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 80/159 (50%), Gaps = 8/159 (5%)
Query: 76 EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
E+ KM + +AVK + D L K G A LF +++ KG +++ + +I +
Sbjct: 249 ELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGF 308
Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
+AG+ + ++ M+ + PN T++VLI L +A++ EM+ +G
Sbjct: 309 CNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGK-----LREAEELHKEMIHRG 363
Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
+ P+ TYT++ + F + +D+A ++ M +KG P+
Sbjct: 364 IAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPN 402
Score = 74.3 bits (181), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 83/180 (46%), Gaps = 16/180 (8%)
Query: 77 IFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
+ KM G NAV + + + K G T A++L +++++ D V ++ +I+
Sbjct: 215 LIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLC 274
Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193
G A +F M G+ N TY +LI G NA D K L +M+ + +
Sbjct: 275 KHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFC-----NAGRWDDGAKLLRDMIKRKI 329
Query: 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD--------EKAVKEALIDKRGQ 245
PN T++ + ++FV+ K+ EA L ++M +G PD + KE +DK Q
Sbjct: 330 NPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQ 389
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 68/139 (48%), Gaps = 5/139 (3%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
+ D+ K+G EA +L ++ +G PD + +T++I+ + +A ++ M++ G
Sbjct: 339 LIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKG 398
Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
PN T+ +LI G A + D + +M +G+ + TY + + F K
Sbjct: 399 CDPNIRTFNILINGYCKANR-----IDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGK 453
Query: 213 VDEARGLLQQMKAKGFVPD 231
++ A+ L Q+M ++ P+
Sbjct: 454 LNVAKELFQEMVSRKVPPN 472
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 68/139 (48%), Gaps = 5/139 (3%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
+ + L +G EAL+L ++ + GH PD++ ++ +G+ EA+ + +M+ G
Sbjct: 164 LINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYG 223
Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
PNA TY ++ + + G + A + L +M + ++ +A Y+ + + +
Sbjct: 224 CQPNAVTYGPVLNVMCKS--GQTAL---AMELLRKMEERNIKLDAVKYSIIIDGLCKHGS 278
Query: 213 VDEARGLLQQMKAKGFVPD 231
+D A L +M+ KG +
Sbjct: 279 LDNAFNLFNEMEMKGITTN 297
Score = 58.9 bits (141), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 11/145 (7%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
+ + K + L+LF ++ +G + D V + +I+ + G+ A +F M++
Sbjct: 409 LINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRK 468
Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL--MEMVGKG-MRPNAGTYTAVFEAFVR 209
V PN TY +L+ GL G+++K L E + K M + G Y +
Sbjct: 469 VPPNIVTYKILLDGLCDN--------GESEKALEIFEKIEKSKMELDIGIYNIIIHGMCN 520
Query: 210 AQKVDEARGLLQQMKAKGFVPDEKA 234
A KVD+A L + KG P K
Sbjct: 521 ASKVDDAWDLFCSLPLKGVKPGVKT 545
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 73/159 (45%), Gaps = 8/159 (5%)
Query: 76 EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
E+F KM G+ + V + + G + A +LF ++ + P++V + +++
Sbjct: 424 ELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGL 483
Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192
G+ ++AL +F ++ S + + Y ++I G+ NA + DA + KG
Sbjct: 484 CDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMC-----NASKVDDAWDLFCSLPLKG 538
Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
++P TY + + + EA L ++M+ G PD
Sbjct: 539 VKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPD 577
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 75/168 (44%), Gaps = 15/168 (8%)
Query: 74 LQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
L+ I H + T + N F K L A+ +I G+ P+ + + +I
Sbjct: 116 LKGIAHNLYTLSIMINC---FCRCRKLCLAFSAM---GKIIKLGYEPNTITFSTLINGLC 169
Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA-DGNAKILGDAQKYLMEMVGKG 192
G+ EAL + RM+ G P+ T L+ GL + + A +L D +MV G
Sbjct: 170 LEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLID------KMVEYG 223
Query: 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240
+PNA TY V ++ + A LL++M+ + D AVK ++I
Sbjct: 224 CQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLD--AVKYSII 269
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 5/127 (3%)
Query: 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLI 164
+A+ LF + +P V+ + + A A Q L + +M G+A N YT +++I
Sbjct: 71 DAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMI 130
Query: 165 KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224
+ L A + +++ G PN T++ + +V EA L+ +M
Sbjct: 131 NCFC-----RCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMV 185
Query: 225 AKGFVPD 231
G PD
Sbjct: 186 EMGHKPD 192
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 68/164 (41%), Gaps = 16/164 (9%)
Query: 52 KLPPPYDPFKKVVD--EEPTDPRNLQEIFHKMRTE------GLTNNAVKMFDALSKDGLT 103
K+PP +K ++D + + EIF K+ G+ N + SK
Sbjct: 468 KVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASK---V 524
Query: 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163
+A LF + KG P V + +I G EA +F +M G AP+ +TY +L
Sbjct: 525 DDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNIL 584
Query: 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAF 207
I+ A DG+A + K + E+ G +A T V +
Sbjct: 585 IR--AHLGDGDAT---KSVKLIEELKRCGFSVDASTIKMVIDML 623
Score = 37.0 bits (84), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
M L K G EA LF ++++ GH PD + +I A+ G +++++ + G
Sbjct: 549 MIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCG 608
Query: 153 VAPNAYTYAVLIKGLAAAADGNAK 176
+ +A T ++I L +DG K
Sbjct: 609 FSVDASTIKMVIDML---SDGRLK 629
>sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900
OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1
Length = 907
Score = 76.3 bits (186), Expect = 2e-13, Method: Composition-based stats.
Identities = 45/146 (30%), Positives = 72/146 (49%), Gaps = 12/146 (8%)
Query: 86 LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVF 145
L N K D + +G A++ +K P VV +T+++ Y S G+ +ALR++
Sbjct: 443 LINGHCKFGDISAAEGF-------MAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLY 495
Query: 146 MRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFE 205
M G+AP+ YT+ L+ GL A ++ DA K EM ++PN TY + E
Sbjct: 496 HEMTGKGIAPSIYTFTTLLSGLFRAG-----LIRDAVKLFNEMAEWNVKPNRVTYNVMIE 550
Query: 206 AFVRAQKVDEARGLLQQMKAKGFVPD 231
+ + +A L++M KG VPD
Sbjct: 551 GYCEEGDMSKAFEFLKEMTEKGIVPD 576
Score = 63.2 bits (152), Expect = 2e-09, Method: Composition-based stats.
Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 12/156 (7%)
Query: 77 IFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
++H+M +G+ + + L + GL +A++LF ++ + P+ V + +IE Y
Sbjct: 494 LYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYC 553
Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN-AKILGDAQKYLMEMVGKG 192
G +A M G+ P+ Y+Y LI GL + AK+ D + KG
Sbjct: 554 EEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDG-------LHKG 606
Query: 193 -MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
N YT + F R K++EA + Q+M +G
Sbjct: 607 NCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRG 642
Score = 62.8 bits (151), Expect = 2e-09, Method: Composition-based stats.
Identities = 48/172 (27%), Positives = 73/172 (42%), Gaps = 34/172 (19%)
Query: 94 FDALSKDGLTHEALQLF----AQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRML 149
+ L L H+ +LF ++ D+G PD V +T++I+A + G KEA ++ M+
Sbjct: 650 YGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMI 709
Query: 150 ASGVAPNAYTYAVLIKGLAAAADGN-AKILG---------------------------DA 181
G PN TY +I GL A N A++L D
Sbjct: 710 NEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDM 769
Query: 182 QKY--LMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
QK L + KG+ N TY + F R +++EA L+ +M G PD
Sbjct: 770 QKAVELHNAILKGLLANTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPD 821
Score = 62.0 bits (149), Expect = 4e-09, Method: Composition-based stats.
Identities = 45/168 (26%), Positives = 74/168 (44%), Gaps = 30/168 (17%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
+ + L K G EAL L ++ D G P++ + A+I++ + EA +F RM G
Sbjct: 338 LVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIG 397
Query: 153 VAPNAYTYAVLI-----KG--------LAAAADGNAKI--------------LGD---AQ 182
+ PN TY++LI +G L D K+ GD A+
Sbjct: 398 LRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAE 457
Query: 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230
++ EM+ K + P TYT++ + K+++A L +M KG P
Sbjct: 458 GFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAP 505
Score = 61.2 bits (147), Expect = 6e-09, Method: Composition-based stats.
Identities = 55/191 (28%), Positives = 77/191 (40%), Gaps = 33/191 (17%)
Query: 77 IFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133
+ +M GL + V M DA SK G EA ++ + ++G +P+ V +TAVI
Sbjct: 669 LLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLC 728
Query: 134 SAGQGKEALRVFMRMLASGVAPNAYTYA----VLIKG------------------LAAAA 171
AG EA + +M PN TY +L KG LA A
Sbjct: 729 KAGFVNEAEVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAILKGLLANTA 788
Query: 172 DGNAKILG--------DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223
N I G +A + + M+G G+ P+ TYT + R V +A L M
Sbjct: 789 TYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSM 848
Query: 224 KAKGFVPDEKA 234
KG PD A
Sbjct: 849 TEKGIRPDRVA 859
Score = 53.1 bits (126), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 5/109 (4%)
Query: 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179
P A ++++E G+ +EAL + R++ GV+PN + Y LI L +
Sbjct: 330 PSEAAVSSLVEGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLC-----KGRKFH 384
Query: 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228
+A+ M G+RPN TY+ + + F R K+D A L +M G
Sbjct: 385 EAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGL 433
Score = 52.0 bits (123), Expect = 4e-06, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 5/121 (4%)
Query: 116 KGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNA 175
KG + + + +I + G+ +EA + RM+ GV+P+ TY +I L D
Sbjct: 781 KGLLANTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRND--- 837
Query: 176 KILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAV 235
+ A + M KG+RP+ Y + A ++ +A L +M +G +P+ K
Sbjct: 838 --VKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLIPNNKTS 895
Query: 236 K 236
+
Sbjct: 896 R 896
Score = 50.4 bits (119), Expect = 1e-05, Method: Composition-based stats.
Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 7/142 (4%)
Query: 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165
A++LF + G PDV +T VI + A + M A+G N Y VLI
Sbjct: 211 AMELFNDMVSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHMEATGCDVNIVPYNVLID 270
Query: 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225
GL + + +A ++ GK ++P+ TY + + Q+ + ++ +M
Sbjct: 271 GLC-----KKQKVWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLC 325
Query: 226 KGFVPDEKAVKEAL--IDKRGQ 245
F P E AV + + KRG+
Sbjct: 326 LRFSPSEAAVSSLVEGLRKRGK 347
Score = 47.8 bits (112), Expect = 9e-05, Method: Composition-based stats.
Identities = 44/199 (22%), Positives = 79/199 (39%), Gaps = 43/199 (21%)
Query: 72 RNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDV------ 122
R+ ++F++M + N V M + ++G +A + ++ +KG +PD
Sbjct: 524 RDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPL 583
Query: 123 -----------------------------VAHTAVIEAYASAGQGKEALRVFMRMLASGV 153
+ +T ++ + G+ +EAL V M+ GV
Sbjct: 584 IHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGV 643
Query: 154 APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV 213
+ Y VLI G D G L EM +G++P+ YT++ +A +
Sbjct: 644 DLDLVCYGVLIDGSLKHKD-RKLFFG----LLKEMHDRGLKPDDVIYTSMIDAKSKTGDF 698
Query: 214 DEARGLLQQMKAKGFVPDE 232
EA G+ M +G VP+E
Sbjct: 699 KEAFGIWDLMINEGCVPNE 717
Score = 45.8 bits (107), Expect = 3e-04, Method: Composition-based stats.
Identities = 43/185 (23%), Positives = 75/185 (40%), Gaps = 12/185 (6%)
Query: 67 EPTDPRNLQEIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVV 123
E D +E+ M G N V + D L K EA+ + + K PDVV
Sbjct: 239 ELKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVV 298
Query: 124 AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQK 183
+ ++ + + L + ML +P+ + L++GL + +A
Sbjct: 299 TYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGK-----IEEALN 353
Query: 184 YLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID-- 241
+ +V G+ PN Y A+ ++ + +K EA L +M G P++ LID
Sbjct: 354 LVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPND-VTYSILIDMF 412
Query: 242 -KRGQ 245
+RG+
Sbjct: 413 CRRGK 417
Score = 45.8 bits (107), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 5/113 (4%)
Query: 119 MPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKIL 178
+P+V +A++ A+ +F M++ G+ P+ Y Y +I+ L D L
Sbjct: 189 LPEVRTLSALLHGLVKFRHFGLAMELFNDMVSVGIRPDVYIYTGVIRSLCELKD-----L 243
Query: 179 GDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
A++ + M G N Y + + + QKV EA G+ + + K PD
Sbjct: 244 SRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPD 296
Score = 38.9 bits (89), Expect = 0.041, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 76 EIFHKMRTEGLTNNAVK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132
E+ +M +G++ + + M + L + +A++L+ + +KG PD VA+ +I
Sbjct: 808 ELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGC 867
Query: 133 ASAGQGKEALRVFMRMLASGVAPNAYT 159
AG+ +A + ML G+ PN T
Sbjct: 868 CVAGEMGKATELRNEMLRQGLIPNNKT 894
Score = 37.4 bits (85), Expect = 0.100, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 128 VIEAYASAGQGKEALRVFMRMLAS-GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186
+I+ Y + + + + VF M+ + P T + L+ GL + G A +
Sbjct: 162 LIQHYVRSRRVLDGVLVFKMMITKVSLLPEVRTLSALLHGLV-----KFRHFGLAMELFN 216
Query: 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
+MV G+RP+ YT V + + + A+ ++ M+A G
Sbjct: 217 DMVSVGIRPDVYIYTGVIRSLCELKDLSRAKEMIAHMEATG 257
>sp|O49436|PP327_ARATH Pentatricopeptide repeat-containing protein At4g20090
OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1
Length = 660
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 69/142 (48%), Gaps = 5/142 (3%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
+ L K+G EA+ L+ ++ +KG P++V ++ +++ G+ EA + RM+ASG
Sbjct: 368 LISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASG 427
Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
PNAYTY+ L+KG + +A + EM G N Y+ + + +
Sbjct: 428 CLPNAYTYSSLMKGFFKTG-----LCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGR 482
Query: 213 VDEARGLLQQMKAKGFVPDEKA 234
V EA + +M G PD A
Sbjct: 483 VKEAMMVWSKMLTIGIKPDTVA 504
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 76/167 (45%), Gaps = 11/167 (6%)
Query: 71 PRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127
P +EI ++M G NA + K GL EA+Q++ ++ G + ++
Sbjct: 413 PNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSV 472
Query: 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187
+I+ G+ KEA+ V+ +ML G+ P+ Y+ +IKGL +A A K E
Sbjct: 473 LIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDA-----ALKLYHE 527
Query: 188 MVGK---GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231
M+ + +P+ TY + + + + A LL M +G PD
Sbjct: 528 MLCQEEPKSQPDVVTYNILLDGLCMQKDISRAVDLLNSMLDRGCDPD 574
Score = 65.5 bits (158), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 76/158 (48%), Gaps = 10/158 (6%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
+ + L K +A++L + ++++G+ + ++ +I G+ +EA+ ++ +M G
Sbjct: 333 LINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKG 392
Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
PN Y+VL+ GL N +A++ L M+ G PNA TY+++ + F +
Sbjct: 393 CKPNIVVYSVLVDGLCREGKPN-----EAKEILNRMIASGCLPNAYTYSSLMKGFFKTGL 447
Query: 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGV 250
+EA + ++M G K LID G GV
Sbjct: 448 CEEAVQVWKEMDKTG-CSRNKFCYSVLID----GLCGV 480
Score = 61.6 bits (148), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 7/148 (4%)
Query: 85 GLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRV 144
GL+ N V AL K A+++F + ++ +PD + +++ + EA+ +
Sbjct: 187 GLSFNLV--IKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLL 244
Query: 145 FMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVF 204
M + G +P+ Y VLI GL D L K + M KG PN TY +
Sbjct: 245 LDEMQSEGCSPSPVIYNVLIDGLCKKGD-----LTRVTKLVDNMFLKGCVPNEVTYNTLI 299
Query: 205 EAFVRAQKVDEARGLLQQMKAKGFVPDE 232
K+D+A LL++M + +P++
Sbjct: 300 HGLCLKGKLDKAVSLLERMVSSKCIPND 327
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 56/136 (41%), Gaps = 5/136 (3%)
Query: 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152
+ D L K+ EA+ L +++ +G P V + +I+ G ++ M G
Sbjct: 228 LMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKG 287
Query: 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212
PN TY LI GL L A L MV PN TY + V+ ++
Sbjct: 288 CVPNEVTYNTLIHGLCLKGK-----LDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRR 342
Query: 213 VDEARGLLQQMKAKGF 228
+A LL M+ +G+
Sbjct: 343 ATDAVRLLSSMEERGY 358
>sp|Q9ZUY1|PP173_ARATH Pentatricopeptide repeat-containing protein At2g27800,
mitochondrial OS=Arabidopsis thaliana GN=At2g27800 PE=2
SV=2
Length = 442
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 65/124 (52%), Gaps = 6/124 (4%)
Query: 109 LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRM-LASGVAPNAYTYAVLIKGL 167
LF Q+ D G PDV A +++ Y + +ALR+F +M + PN++TY LI GL
Sbjct: 275 LFRQMVDSGIEPDVFALNCLVKGYVLSLHVNDALRIFHQMSVVYDCEPNSFTYDYLIHGL 334
Query: 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227
A +A++ L EM GKG PN +Y ++ AF + ++D+A L +M G
Sbjct: 335 CAQGRT-----INARELLSEMKGKGFVPNGKSYNSLVNAFALSGEIDDAVKCLWEMIENG 389
Query: 228 FVPD 231
V D
Sbjct: 390 RVVD 393
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 71/163 (43%), Gaps = 20/163 (12%)
Query: 84 EGLTNNAVKMFDALSKDGLTHEALQLFAQI---KDKGHMPDVVAHTAVIEAYASAGQGK- 139
E L N+ + F +K G A+ +F + K+ P + + + +A G
Sbjct: 207 ENLYNSIIFYF---TKAGKLIRAVNIFRHMVTSKNLECRPTIRTYHILFKALLGRGNNSY 263
Query: 140 ------EALR-VFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM-VGK 191
E +R +F +M+ SG+ P+ + L+KG + N DA + +M V
Sbjct: 264 INHVYMETVRSLFRQMVDSGIEPDVFALNCLVKGYVLSLHVN-----DALRIFHQMSVVY 318
Query: 192 GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234
PN+ TY + + AR LL +MK KGFVP+ K+
Sbjct: 319 DCEPNSFTYDYLIHGLCAQGRTINARELLSEMKGKGFVPNGKS 361
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,894,855
Number of Sequences: 539616
Number of extensions: 3738599
Number of successful extensions: 16170
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 117
Number of HSP's that attempted gapping in prelim test: 12055
Number of HSP's gapped (non-prelim): 2530
length of query: 257
length of database: 191,569,459
effective HSP length: 115
effective length of query: 142
effective length of database: 129,513,619
effective search space: 18390933898
effective search space used: 18390933898
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)