Query 043311
Match_columns 257
No_of_seqs 186 out of 1965
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 03:44:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043311.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043311hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 2.5E-37 5.5E-42 283.9 23.4 232 20-256 538-778 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 2.7E-37 6E-42 283.7 23.4 230 22-256 435-673 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 3.2E-34 6.8E-39 259.1 19.9 224 22-256 257-486 (697)
4 PLN03081 pentatricopeptide (PP 100.0 1.1E-33 2.4E-38 255.6 17.7 194 53-256 255-450 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 1.4E-32 3.1E-37 253.5 21.1 233 21-256 320-649 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 2.4E-32 5.1E-37 252.1 21.9 186 63-257 261-449 (857)
7 PF13041 PPR_2: PPR repeat fam 99.6 6.1E-16 1.3E-20 91.4 6.5 50 120-169 1-50 (50)
8 PF13041 PPR_2: PPR repeat fam 99.6 4.9E-15 1.1E-19 87.5 7.0 50 195-244 1-50 (50)
9 PRK11788 tetratricopeptide rep 99.5 1.1E-12 2.3E-17 111.4 18.9 218 29-256 112-342 (389)
10 PRK11788 tetratricopeptide rep 99.5 9.3E-12 2E-16 105.6 20.0 186 63-256 115-306 (389)
11 KOG4422 Uncharacterized conser 99.4 1.5E-11 3.3E-16 100.5 16.9 180 63-251 123-331 (625)
12 TIGR02917 PEP_TPR_lipo putativ 99.4 1.4E-10 3E-15 107.7 20.6 185 63-257 711-896 (899)
13 TIGR02917 PEP_TPR_lipo putativ 99.3 5.8E-10 1.3E-14 103.7 20.4 154 63-224 575-730 (899)
14 KOG4422 Uncharacterized conser 99.3 2.4E-10 5.2E-15 93.7 15.2 159 92-255 212-379 (625)
15 KOG4318 Bicoid mRNA stability 99.1 2.1E-10 4.7E-15 101.1 9.3 164 76-249 11-288 (1088)
16 PF12854 PPR_1: PPR repeat 99.1 9.3E-11 2E-15 62.7 4.1 34 191-224 1-34 (34)
17 PF12854 PPR_1: PPR repeat 99.1 1.3E-10 2.8E-15 62.1 3.9 34 116-149 1-34 (34)
18 TIGR02521 type_IV_pilW type IV 99.1 1.7E-07 3.8E-12 72.9 21.8 186 63-256 39-227 (234)
19 PF13429 TPR_15: Tetratricopep 99.0 7.5E-09 1.6E-13 84.0 13.5 183 66-257 88-273 (280)
20 PRK15174 Vi polysaccharide exp 99.0 1.1E-07 2.4E-12 86.0 21.2 151 95-256 220-376 (656)
21 PRK15174 Vi polysaccharide exp 99.0 3.2E-07 7E-12 83.0 22.2 118 132-256 187-308 (656)
22 TIGR00990 3a0801s09 mitochondr 98.9 4.8E-07 1E-11 81.5 21.4 218 32-257 339-567 (615)
23 PRK10747 putative protoheme IX 98.9 4.6E-07 9.9E-12 77.3 18.6 78 176-257 308-386 (398)
24 TIGR00990 3a0801s09 mitochondr 98.8 2.7E-06 5.8E-11 76.8 22.9 179 68-257 307-492 (615)
25 PF13429 TPR_15: Tetratricopep 98.8 1.9E-08 4.1E-13 81.7 8.1 217 30-257 14-239 (280)
26 TIGR02521 type_IV_pilW type IV 98.8 8.9E-07 1.9E-11 68.9 17.1 192 28-226 35-232 (234)
27 PRK09782 bacteriophage N4 rece 98.7 5E-06 1.1E-10 77.9 22.7 180 66-256 520-701 (987)
28 TIGR00540 hemY_coli hemY prote 98.7 2.5E-06 5.5E-11 73.0 19.3 217 35-257 95-395 (409)
29 TIGR00756 PPR pentatricopeptid 98.7 2.6E-08 5.5E-13 53.6 4.4 34 198-231 1-34 (35)
30 PF13812 PPR_3: Pentatricopept 98.7 2.3E-08 4.9E-13 53.5 4.1 33 123-155 2-34 (34)
31 PF08579 RPM2: Mitochondrial r 98.7 6.1E-07 1.3E-11 60.6 11.5 86 124-209 27-116 (120)
32 TIGR00756 PPR pentatricopeptid 98.7 2.7E-08 5.9E-13 53.5 4.2 34 123-156 1-34 (35)
33 PF13812 PPR_3: Pentatricopept 98.7 3.6E-08 7.9E-13 52.7 4.4 33 198-230 2-34 (34)
34 COG2956 Predicted N-acetylgluc 98.7 2E-06 4.2E-11 68.7 15.7 212 35-254 46-271 (389)
35 PRK14574 hmsH outer membrane p 98.7 8.5E-06 1.8E-10 75.0 21.5 221 31-256 75-391 (822)
36 PRK10049 pgaA outer membrane p 98.6 1.1E-05 2.3E-10 74.6 21.9 184 65-256 247-451 (765)
37 PF08579 RPM2: Mitochondrial r 98.6 1.1E-06 2.3E-11 59.5 9.6 77 93-169 31-116 (120)
38 PRK11447 cellulose synthase su 98.5 7.1E-06 1.5E-10 79.1 18.4 215 30-257 467-736 (1157)
39 PRK14574 hmsH outer membrane p 98.5 3E-05 6.5E-10 71.4 21.1 187 63-256 300-508 (822)
40 PF06239 ECSIT: Evolutionarily 98.5 1.6E-06 3.5E-11 65.7 10.2 104 120-247 45-153 (228)
41 PRK09782 bacteriophage N4 rece 98.5 5E-05 1.1E-09 71.4 22.2 178 67-257 488-668 (987)
42 PRK12370 invasion protein regu 98.5 5E-05 1.1E-09 67.6 21.3 170 67-247 316-490 (553)
43 KOG4626 O-linked N-acetylgluco 98.5 3.9E-06 8.4E-11 72.5 13.5 190 23-224 217-415 (966)
44 COG3071 HemY Uncharacterized e 98.5 2.6E-05 5.7E-10 64.0 17.6 57 198-256 329-385 (400)
45 PRK11447 cellulose synthase su 98.5 1.6E-05 3.5E-10 76.7 18.1 186 63-257 469-696 (1157)
46 PF10037 MRP-S27: Mitochondria 98.5 3.9E-06 8.5E-11 71.0 12.3 122 119-245 63-186 (429)
47 PRK10747 putative protoheme IX 98.4 9.6E-05 2.1E-09 63.1 20.7 210 35-255 95-317 (398)
48 PF01535 PPR: PPR repeat; Int 98.4 2.7E-07 5.9E-12 48.1 3.3 31 123-153 1-31 (31)
49 PF01535 PPR: PPR repeat; Int 98.4 2.8E-07 6.1E-12 48.0 3.3 31 198-228 1-31 (31)
50 PRK12370 invasion protein regu 98.4 9.2E-05 2E-09 66.0 20.9 176 69-257 275-466 (553)
51 PRK10049 pgaA outer membrane p 98.4 7.1E-05 1.5E-09 69.3 20.7 169 63-241 280-469 (765)
52 TIGR00540 hemY_coli hemY prote 98.4 9.4E-05 2E-09 63.4 20.0 186 63-256 92-287 (409)
53 PF04733 Coatomer_E: Coatomer 98.3 9E-06 1.9E-10 66.1 10.3 148 96-255 111-259 (290)
54 PF06239 ECSIT: Evolutionarily 98.3 6.6E-06 1.4E-10 62.5 8.5 71 99-169 64-150 (228)
55 KOG4318 Bicoid mRNA stability 98.2 1.4E-05 3.1E-10 71.6 10.9 133 108-241 11-248 (1088)
56 KOG4626 O-linked N-acetylgluco 98.2 0.00029 6.3E-09 61.4 18.4 195 49-255 277-479 (966)
57 KOG2003 TPR repeat-containing 98.2 0.00019 4.1E-09 60.3 16.7 182 63-249 498-711 (840)
58 PF10037 MRP-S27: Mitochondria 98.2 1.9E-05 4.2E-10 66.9 11.1 107 63-169 74-185 (429)
59 COG2956 Predicted N-acetylgluc 98.2 0.00011 2.5E-09 58.9 14.6 190 32-227 77-279 (389)
60 KOG2003 TPR repeat-containing 98.1 0.00071 1.5E-08 56.9 17.9 124 93-225 598-721 (840)
61 KOG1129 TPR repeat-containing 98.1 0.00013 2.8E-09 58.8 12.6 154 92-256 228-382 (478)
62 KOG1070 rRNA processing protei 98.1 0.00047 1E-08 65.0 17.9 223 23-254 1457-1693(1710)
63 KOG1126 DNA-binding cell divis 98.1 9.8E-05 2.1E-09 64.3 12.7 154 92-257 358-548 (638)
64 COG3071 HemY Uncharacterized e 98.0 0.0038 8.1E-08 51.7 20.7 214 35-256 95-352 (400)
65 TIGR03302 OM_YfiO outer membra 98.0 0.0012 2.6E-08 52.0 17.8 162 93-256 39-227 (235)
66 KOG1155 Anaphase-promoting com 98.0 0.0014 2.9E-08 55.4 17.9 184 63-257 270-491 (559)
67 KOG3081 Vesicle coat complex C 98.0 0.0025 5.5E-08 50.1 18.0 145 94-250 115-259 (299)
68 PF12569 NARP1: NMDA receptor- 97.9 0.0045 9.8E-08 54.4 20.7 212 37-256 17-286 (517)
69 PRK11189 lipoprotein NlpI; Pro 97.9 0.0024 5.3E-08 52.3 18.2 180 63-256 72-260 (296)
70 KOG1129 TPR repeat-containing 97.9 0.0003 6.5E-09 56.7 12.3 155 63-225 231-386 (478)
71 KOG1840 Kinesin light chain [C 97.9 0.0021 4.7E-08 56.0 18.2 189 63-256 249-474 (508)
72 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.0013 2.8E-08 55.7 16.1 121 92-224 174-295 (395)
73 KOG1173 Anaphase-promoting com 97.9 0.0013 2.9E-08 56.6 15.6 200 35-245 323-535 (611)
74 PF04733 Coatomer_E: Coatomer 97.8 0.00027 5.8E-09 57.5 10.6 151 63-226 110-265 (290)
75 PRK15359 type III secretion sy 97.8 0.007 1.5E-07 43.9 16.5 95 125-226 27-121 (144)
76 TIGR03302 OM_YfiO outer membra 97.8 0.0054 1.2E-07 48.2 17.1 157 63-226 41-232 (235)
77 KOG3941 Intermediate in Toll s 97.7 0.00037 7.9E-09 55.2 9.6 105 119-247 64-173 (406)
78 PRK15179 Vi polysaccharide bio 97.7 0.01 2.2E-07 54.2 20.2 137 93-240 92-230 (694)
79 PF05843 Suf: Suppressor of fo 97.7 0.0016 3.6E-08 52.8 13.7 141 92-242 6-150 (280)
80 COG3063 PilF Tfp pilus assembl 97.7 0.0087 1.9E-07 46.2 16.5 183 63-254 43-229 (250)
81 COG3063 PilF Tfp pilus assembl 97.7 0.014 2.9E-07 45.1 19.1 196 31-237 42-245 (250)
82 KOG1070 rRNA processing protei 97.7 0.0061 1.3E-07 58.0 18.0 184 63-257 1466-1659(1710)
83 PF12569 NARP1: NMDA receptor- 97.7 0.016 3.5E-07 51.0 20.0 175 73-255 129-328 (517)
84 KOG1840 Kinesin light chain [C 97.7 0.0026 5.7E-08 55.4 14.7 189 63-256 207-433 (508)
85 cd05804 StaR_like StaR_like; a 97.6 0.024 5.1E-07 47.5 20.2 154 63-226 51-215 (355)
86 COG5010 TadD Flp pilus assembl 97.6 0.019 4E-07 45.1 19.3 153 93-255 72-225 (257)
87 TIGR02552 LcrH_SycD type III s 97.6 0.0071 1.5E-07 43.0 14.6 105 123-236 18-122 (135)
88 PRK10370 formate-dependent nit 97.6 0.011 2.5E-07 45.3 16.3 162 63-241 24-186 (198)
89 KOG3081 Vesicle coat complex C 97.6 0.0054 1.2E-07 48.3 14.1 149 63-225 116-270 (299)
90 PF05843 Suf: Suppressor of fo 97.6 0.00094 2E-08 54.2 10.6 126 122-256 1-131 (280)
91 cd05804 StaR_like StaR_like; a 97.6 0.008 1.7E-07 50.4 16.4 181 66-256 17-210 (355)
92 KOG3060 Uncharacterized conser 97.5 0.026 5.6E-07 44.3 20.0 168 68-247 25-203 (289)
93 KOG0547 Translocase of outer m 97.5 0.0077 1.7E-07 51.4 14.7 185 63-257 368-562 (606)
94 cd00189 TPR Tetratricopeptide 97.5 0.0074 1.6E-07 38.9 12.3 94 125-225 3-96 (100)
95 KOG1155 Anaphase-promoting com 97.5 0.046 1E-06 46.5 18.9 197 50-254 325-529 (559)
96 KOG1915 Cell cycle control pro 97.5 0.019 4.1E-07 49.0 16.6 148 67-225 85-235 (677)
97 KOG1126 DNA-binding cell divis 97.5 0.0077 1.7E-07 52.9 14.8 216 25-253 391-612 (638)
98 KOG3941 Intermediate in Toll s 97.5 0.0014 3.1E-08 51.9 9.5 101 99-223 84-185 (406)
99 COG4783 Putative Zn-dependent 97.5 0.044 9.6E-07 46.8 18.8 105 65-172 316-423 (484)
100 PF09295 ChAPs: ChAPs (Chs5p-A 97.5 0.0091 2E-07 50.6 15.0 121 123-255 170-291 (395)
101 KOG2076 RNA polymerase III tra 97.5 0.0034 7.4E-08 56.9 12.9 230 26-257 209-474 (895)
102 PRK11189 lipoprotein NlpI; Pro 97.4 0.051 1.1E-06 44.5 21.4 149 68-225 39-193 (296)
103 PF12921 ATP13: Mitochondrial 97.4 0.0057 1.2E-07 43.2 11.0 54 191-244 46-100 (126)
104 PF09976 TPR_21: Tetratricopep 97.4 0.015 3.3E-07 42.1 13.7 117 99-222 23-143 (145)
105 TIGR02552 LcrH_SycD type III s 97.4 0.024 5.2E-07 40.2 14.6 102 93-203 23-124 (135)
106 PRK15359 type III secretion sy 97.4 0.022 4.8E-07 41.2 14.5 115 76-201 14-129 (144)
107 PF09976 TPR_21: Tetratricopep 97.4 0.019 4E-07 41.7 13.9 128 122-257 12-143 (145)
108 KOG1915 Cell cycle control pro 97.3 0.017 3.6E-07 49.3 14.4 147 99-256 85-231 (677)
109 PRK10370 formate-dependent nit 97.3 0.054 1.2E-06 41.5 16.7 131 67-206 51-186 (198)
110 KOG2002 TPR-containing nuclear 97.2 0.071 1.5E-06 49.2 17.8 200 51-256 266-476 (1018)
111 COG4783 Putative Zn-dependent 97.1 0.09 2E-06 45.0 17.2 124 93-225 312-436 (484)
112 KOG0547 Translocase of outer m 97.1 0.078 1.7E-06 45.5 16.4 182 67-257 338-528 (606)
113 cd00189 TPR Tetratricopeptide 97.1 0.023 5E-07 36.5 11.4 91 93-190 6-96 (100)
114 TIGR02795 tol_pal_ybgF tol-pal 97.1 0.045 9.8E-07 37.6 13.8 97 125-226 5-105 (119)
115 PRK15179 Vi polysaccharide bio 97.1 0.13 2.7E-06 47.2 18.9 166 63-245 94-268 (694)
116 PF13170 DUF4003: Protein of u 97.1 0.075 1.6E-06 43.5 15.7 155 71-229 78-254 (297)
117 TIGR02795 tol_pal_ybgF tol-pal 97.0 0.049 1.1E-06 37.4 13.0 95 92-191 7-105 (119)
118 KOG4340 Uncharacterized conser 97.0 0.044 9.5E-07 44.1 13.6 178 37-222 125-335 (459)
119 PF14559 TPR_19: Tetratricopep 97.0 0.0038 8.2E-08 38.6 6.4 63 98-163 2-64 (68)
120 KOG1914 mRNA cleavage and poly 97.0 0.15 3.2E-06 44.4 17.4 148 71-226 347-501 (656)
121 COG5010 TadD Flp pilus assembl 97.0 0.13 2.8E-06 40.5 15.6 154 63-224 74-229 (257)
122 PRK10866 outer membrane biogen 96.9 0.14 3E-06 40.7 16.9 168 63-255 40-235 (243)
123 PF12921 ATP13: Mitochondrial 96.9 0.021 4.5E-07 40.3 10.1 82 122-208 2-99 (126)
124 PLN03088 SGT1, suppressor of 96.9 0.054 1.2E-06 45.6 14.1 101 95-204 10-110 (356)
125 PF12895 Apc3: Anaphase-promot 96.8 0.0037 8E-08 40.7 5.3 79 136-222 3-83 (84)
126 PF13170 DUF4003: Protein of u 96.8 0.22 4.8E-06 40.8 17.7 167 70-239 34-224 (297)
127 KOG0495 HAT repeat protein [RN 96.8 0.23 5E-06 44.3 17.0 176 66-255 595-776 (913)
128 CHL00033 ycf3 photosystem I as 96.8 0.079 1.7E-06 39.4 12.7 61 124-189 37-99 (168)
129 PF12895 Apc3: Anaphase-promot 96.7 0.0036 7.8E-08 40.7 4.8 47 101-147 3-50 (84)
130 KOG3616 Selective LIM binding 96.7 0.011 2.4E-07 53.0 8.8 108 130-255 740-847 (1636)
131 KOG2002 TPR-containing nuclear 96.7 0.37 7.9E-06 44.8 18.2 188 63-255 315-519 (1018)
132 PLN03088 SGT1, suppressor of 96.7 0.1 2.2E-06 44.0 14.2 100 65-167 12-113 (356)
133 KOG1914 mRNA cleavage and poly 96.7 0.18 3.8E-06 44.0 15.2 144 103-254 347-494 (656)
134 PF04840 Vps16_C: Vps16, C-ter 96.6 0.12 2.5E-06 42.8 13.9 103 93-220 183-285 (319)
135 PF03704 BTAD: Bacterial trans 96.6 0.014 3.1E-07 42.2 7.7 70 124-199 64-138 (146)
136 KOG1174 Anaphase-promoting com 96.6 0.26 5.6E-06 41.6 15.2 183 63-255 308-494 (564)
137 KOG2796 Uncharacterized conser 96.5 0.25 5.5E-06 39.2 14.2 141 93-238 183-325 (366)
138 KOG3616 Selective LIM binding 96.5 0.033 7.1E-07 50.2 10.5 160 67-254 744-904 (1636)
139 KOG2076 RNA polymerase III tra 96.5 0.66 1.4E-05 42.8 20.4 120 63-190 148-269 (895)
140 KOG3785 Uncharacterized conser 96.5 0.029 6.2E-07 46.2 9.3 182 35-226 296-490 (557)
141 PRK10153 DNA-binding transcrip 96.5 0.41 8.9E-06 42.5 17.1 136 117-256 332-477 (517)
142 KOG2053 Mitochondrial inherita 96.5 0.57 1.2E-05 43.2 17.9 104 63-169 51-156 (932)
143 KOG1173 Anaphase-promoting com 96.5 0.35 7.5E-06 42.3 15.8 180 67-257 324-514 (611)
144 PRK14720 transcript cleavage f 96.4 0.43 9.4E-06 44.8 17.5 211 28-243 35-268 (906)
145 KOG2047 mRNA splicing factor [ 96.4 0.26 5.6E-06 43.9 15.0 45 123-169 249-293 (835)
146 COG5107 RNA14 Pre-mRNA 3'-end 96.4 0.23 5.1E-06 42.4 14.0 140 93-243 403-546 (660)
147 PF13432 TPR_16: Tetratricopep 96.3 0.023 4.9E-07 34.7 6.3 56 94-150 4-59 (65)
148 PF03704 BTAD: Bacterial trans 96.3 0.039 8.5E-07 39.9 8.5 72 159-236 64-140 (146)
149 PF14559 TPR_19: Tetratricopep 96.3 0.024 5.1E-07 34.9 6.3 49 176-225 5-53 (68)
150 KOG0495 HAT repeat protein [RN 96.3 0.79 1.7E-05 41.2 18.8 179 69-256 390-574 (913)
151 PF13525 YfiO: Outer membrane 96.2 0.28 6E-06 37.8 13.3 174 64-252 14-198 (203)
152 KOG3785 Uncharacterized conser 96.2 0.15 3.3E-06 42.1 12.0 180 63-255 293-484 (557)
153 KOG0624 dsRNA-activated protei 96.2 0.49 1.1E-05 39.1 14.6 202 47-255 95-364 (504)
154 PF12688 TPR_5: Tetratrico pep 96.2 0.24 5.1E-06 34.6 11.5 100 63-168 9-117 (120)
155 PRK14720 transcript cleavage f 96.1 0.35 7.5E-06 45.4 15.2 35 134-169 128-162 (906)
156 KOG4340 Uncharacterized conser 96.0 0.26 5.5E-06 39.9 12.1 157 96-255 153-333 (459)
157 KOG0985 Vesicle coat protein c 96.0 0.41 8.9E-06 45.0 14.8 114 122-255 1104-1217(1666)
158 KOG3060 Uncharacterized conser 96.0 0.57 1.2E-05 37.0 16.0 146 100-255 25-177 (289)
159 PRK02603 photosystem I assembl 96.0 0.43 9.4E-06 35.5 14.5 76 93-169 41-118 (172)
160 KOG1128 Uncharacterized conser 95.9 0.2 4.4E-06 45.0 12.1 159 92-255 429-610 (777)
161 PRK02603 photosystem I assembl 95.7 0.58 1.3E-05 34.8 15.9 115 122-246 35-165 (172)
162 CHL00033 ycf3 photosystem I as 95.6 0.36 7.7E-06 35.8 11.1 113 138-256 15-137 (168)
163 PF04840 Vps16_C: Vps16, C-ter 95.5 0.72 1.6E-05 38.2 13.4 105 123-252 178-282 (319)
164 PF07035 Mic1: Colon cancer-as 95.5 0.71 1.5E-05 34.2 14.4 129 106-253 13-141 (167)
165 KOG2047 mRNA splicing factor [ 95.5 1.7 3.7E-05 39.0 15.8 142 93-244 144-293 (835)
166 smart00299 CLH Clathrin heavy 95.5 0.61 1.3E-05 33.3 14.5 125 92-244 12-137 (140)
167 KOG1125 TPR repeat-containing 95.3 0.5 1.1E-05 41.5 12.1 149 96-255 362-521 (579)
168 PF13371 TPR_9: Tetratricopept 95.1 0.29 6.3E-06 30.4 7.9 56 95-151 3-58 (73)
169 KOG1174 Anaphase-promoting com 95.0 2 4.3E-05 36.6 14.5 47 176-224 348-395 (564)
170 KOG2053 Mitochondrial inherita 94.9 0.35 7.5E-06 44.6 10.5 110 99-219 21-132 (932)
171 PF13432 TPR_16: Tetratricopep 94.9 0.34 7.4E-06 29.3 7.7 49 175-225 10-59 (65)
172 PRK04841 transcriptional regul 94.8 3.8 8.3E-05 39.1 18.8 158 63-225 460-640 (903)
173 PRK10803 tol-pal system protei 94.8 1.2 2.5E-05 35.9 12.3 100 122-232 143-250 (263)
174 PF13512 TPR_18: Tetratricopep 94.7 1.1 2.4E-05 32.2 11.7 74 96-169 19-94 (142)
175 COG5107 RNA14 Pre-mRNA 3'-end 94.6 2.5 5.5E-05 36.4 14.1 123 121-253 396-523 (660)
176 PF12688 TPR_5: Tetratrico pep 94.6 1 2.2E-05 31.5 13.3 57 95-151 9-67 (120)
177 PF10300 DUF3808: Protein of u 94.6 2.6 5.5E-05 37.1 14.9 173 76-257 178-372 (468)
178 PRK04841 transcriptional regul 94.5 2.4 5.3E-05 40.4 15.9 189 63-256 417-636 (903)
179 PF14938 SNAP: Soluble NSF att 94.4 1.5 3.2E-05 35.7 12.4 168 70-256 30-220 (282)
180 PF13414 TPR_11: TPR repeat; P 94.3 0.15 3.2E-06 31.4 5.1 63 156-225 2-66 (69)
181 KOG4570 Uncharacterized conser 94.3 2 4.2E-05 35.3 12.2 47 137-188 115-161 (418)
182 KOG0553 TPR repeat-containing 94.2 1.6 3.5E-05 35.3 11.5 98 133-240 92-190 (304)
183 KOG1128 Uncharacterized conser 94.2 0.9 2E-05 41.1 11.0 134 100-242 498-633 (777)
184 KOG0985 Vesicle coat protein c 94.1 5.6 0.00012 38.0 16.5 102 63-172 1056-1181(1666)
185 PF13424 TPR_12: Tetratricopep 94.1 0.078 1.7E-06 33.6 3.5 58 199-256 7-70 (78)
186 PRK15363 pathogenicity island 93.9 1.8 3.9E-05 31.7 11.6 103 123-233 36-140 (157)
187 PRK10803 tol-pal system protei 93.9 2.3 5E-05 34.2 12.3 87 98-191 154-246 (263)
188 PF13414 TPR_11: TPR repeat; P 93.8 0.76 1.7E-05 28.1 7.6 63 122-189 3-65 (69)
189 smart00299 CLH Clathrin heavy 93.8 1.8 3.8E-05 30.9 11.8 88 123-223 8-95 (140)
190 COG3629 DnrI DNA-binding trans 93.7 1.6 3.4E-05 35.4 10.9 78 158-241 154-236 (280)
191 PF14938 SNAP: Soluble NSF att 93.7 2.5 5.4E-05 34.3 12.4 181 63-251 43-253 (282)
192 KOG2376 Signal recognition par 93.7 1.5 3.3E-05 38.8 11.3 149 70-223 356-517 (652)
193 PLN02789 farnesyltranstransfer 93.6 3.6 7.8E-05 34.2 17.1 137 100-244 50-188 (320)
194 PRK10153 DNA-binding transcrip 93.6 3.7 8E-05 36.6 14.0 122 103-235 358-489 (517)
195 PF10602 RPN7: 26S proteasome 93.6 1.1 2.3E-05 33.7 9.3 59 92-150 41-101 (177)
196 KOG3617 WD40 and TPR repeat-co 93.4 1.3 2.9E-05 41.0 10.7 44 63-112 808-851 (1416)
197 KOG3617 WD40 and TPR repeat-co 93.3 4.8 0.0001 37.5 14.0 141 99-256 812-991 (1416)
198 PF13371 TPR_9: Tetratricopept 93.3 1.1 2.5E-05 27.6 7.9 54 131-190 4-57 (73)
199 COG4105 ComL DNA uptake lipopr 92.9 3.9 8.4E-05 32.5 18.2 49 205-253 175-225 (254)
200 PLN03098 LPA1 LOW PSII ACCUMUL 92.9 3.1 6.7E-05 35.9 11.9 58 92-151 80-141 (453)
201 PF13929 mRNA_stabil: mRNA sta 92.8 2.9 6.2E-05 33.9 10.9 116 138-256 144-262 (292)
202 KOG1125 TPR repeat-containing 92.7 5.6 0.00012 35.2 13.3 140 104-252 411-562 (579)
203 PLN03098 LPA1 LOW PSII ACCUMUL 92.7 3.3 7.2E-05 35.8 11.8 87 63-153 83-176 (453)
204 KOG4570 Uncharacterized conser 92.7 1.5 3.2E-05 36.0 9.2 84 67-151 76-164 (418)
205 PF13512 TPR_18: Tetratricopep 92.7 1.4 3E-05 31.7 8.2 75 63-137 18-97 (142)
206 KOG2376 Signal recognition par 92.5 7.4 0.00016 34.7 14.7 129 122-253 376-512 (652)
207 cd00923 Cyt_c_Oxidase_Va Cytoc 92.5 1.6 3.4E-05 29.1 7.5 47 138-189 23-69 (103)
208 KOG2280 Vacuolar assembly/sort 92.3 5.7 0.00012 36.4 13.0 147 84-254 635-792 (829)
209 PF13424 TPR_12: Tetratricopep 92.2 0.86 1.9E-05 28.7 6.3 61 159-224 7-73 (78)
210 COG4649 Uncharacterized protei 92.2 3.9 8.4E-05 30.6 14.5 132 98-231 69-201 (221)
211 KOG1156 N-terminal acetyltrans 92.1 8.9 0.00019 34.6 15.2 174 63-243 83-263 (700)
212 COG3629 DnrI DNA-binding trans 91.9 2.6 5.6E-05 34.1 9.8 73 93-166 159-236 (280)
213 PF02284 COX5A: Cytochrome c o 91.8 2.8 6.1E-05 28.2 9.1 44 141-189 29-72 (108)
214 PRK10866 outer membrane biogen 91.8 5.5 0.00012 31.6 13.3 158 93-254 38-217 (243)
215 COG4700 Uncharacterized protei 91.7 4.7 0.0001 30.6 15.9 127 90-225 92-225 (251)
216 cd00923 Cyt_c_Oxidase_Va Cytoc 91.6 2.3 4.9E-05 28.4 7.5 65 102-167 22-86 (103)
217 PRK15363 pathogenicity island 91.6 4.2 9.1E-05 29.8 15.7 90 93-190 41-131 (157)
218 COG4235 Cytochrome c biogenesi 91.5 6.5 0.00014 31.9 13.1 103 120-227 154-257 (287)
219 PF02284 COX5A: Cytochrome c o 91.2 1.5 3.2E-05 29.5 6.4 63 104-167 27-89 (108)
220 KOG1127 TPR repeat-containing 91.2 6.3 0.00014 37.5 12.4 51 133-189 573-623 (1238)
221 PF13176 TPR_7: Tetratricopept 91.0 0.77 1.7E-05 24.2 4.3 26 199-224 1-26 (36)
222 PF09205 DUF1955: Domain of un 91.0 4.3 9.3E-05 28.9 11.4 129 100-255 15-143 (161)
223 KOG0553 TPR repeat-containing 90.9 7.1 0.00015 31.8 11.1 94 66-165 92-190 (304)
224 PF10602 RPN7: 26S proteasome 90.6 5.6 0.00012 29.9 10.1 61 124-189 38-100 (177)
225 PF07079 DUF1347: Protein of u 90.4 11 0.00024 32.6 12.4 146 99-251 18-186 (549)
226 PLN02789 farnesyltranstransfer 90.3 9.4 0.0002 31.7 19.2 196 45-244 58-267 (320)
227 PF13525 YfiO: Outer membrane 89.6 7.8 0.00017 29.7 13.5 59 93-151 11-71 (203)
228 PF13281 DUF4071: Domain of un 89.5 12 0.00026 31.7 17.8 163 92-256 146-329 (374)
229 PRK10564 maltose regulon perip 89.0 1.3 2.9E-05 35.9 5.9 47 193-239 252-299 (303)
230 PF13762 MNE1: Mitochondrial s 89.0 7 0.00015 28.3 10.5 77 93-169 45-127 (145)
231 PF11848 DUF3368: Domain of un 88.2 2.8 6.1E-05 23.9 5.4 35 207-241 12-46 (48)
232 COG0735 Fur Fe2+/Zn2+ uptake r 87.9 3.4 7.4E-05 29.9 7.0 64 75-138 6-71 (145)
233 KOG1156 N-terminal acetyltrans 87.6 22 0.00047 32.3 18.3 158 63-228 296-470 (700)
234 PF13762 MNE1: Mitochondrial s 87.6 8.8 0.00019 27.8 11.9 100 111-215 26-133 (145)
235 COG1729 Uncharacterized protei 86.6 8.6 0.00019 30.8 9.0 89 63-151 149-244 (262)
236 PF13374 TPR_10: Tetratricopep 86.5 2.6 5.6E-05 22.5 4.6 29 197-225 2-30 (42)
237 PF13428 TPR_14: Tetratricopep 86.5 3.8 8.2E-05 22.6 5.3 28 124-151 3-30 (44)
238 PF13428 TPR_14: Tetratricopep 86.5 2.4 5.1E-05 23.4 4.4 28 199-226 3-30 (44)
239 PF00637 Clathrin: Region in C 86.3 0.19 4.2E-06 36.1 -0.3 85 93-189 13-97 (143)
240 PF13176 TPR_7: Tetratricopept 86.1 2.3 5E-05 22.3 4.0 24 125-148 2-25 (36)
241 PF09205 DUF1955: Domain of un 85.8 11 0.00023 27.0 13.7 135 68-229 15-152 (161)
242 PF00637 Clathrin: Region in C 85.7 0.23 5E-06 35.7 -0.1 109 127-247 12-140 (143)
243 PF13929 mRNA_stabil: mRNA sta 85.0 19 0.00042 29.3 16.1 134 104-242 145-288 (292)
244 PF02259 FAT: FAT domain; Int 84.8 21 0.00046 29.6 13.8 30 197-226 146-175 (352)
245 PF08631 SPO22: Meiosis protei 84.7 20 0.00043 29.1 17.4 161 65-233 3-193 (278)
246 PF04053 Coatomer_WDAD: Coatom 84.5 27 0.00059 30.5 15.5 139 63-221 269-426 (443)
247 KOG4077 Cytochrome c oxidase, 84.1 11 0.00024 26.6 7.4 45 140-189 67-111 (149)
248 KOG0543 FKBP-type peptidyl-pro 84.1 25 0.00055 29.9 12.1 123 95-225 216-354 (397)
249 PF04184 ST7: ST7 protein; In 84.1 29 0.00064 30.6 13.5 78 128-211 265-345 (539)
250 KOG2114 Vacuolar assembly/sort 84.0 20 0.00043 33.6 10.9 101 62-172 341-446 (933)
251 KOG2280 Vacuolar assembly/sort 83.8 9 0.00019 35.2 8.6 106 92-221 689-794 (829)
252 PF11207 DUF2989: Protein of u 83.7 18 0.00038 27.8 9.9 73 179-252 123-198 (203)
253 PF08631 SPO22: Meiosis protei 83.5 22 0.00048 28.8 18.2 185 67-256 47-270 (278)
254 PRK15331 chaperone protein Sic 83.4 16 0.00035 27.1 10.4 51 98-149 48-98 (165)
255 PF11207 DUF2989: Protein of u 83.3 18 0.0004 27.7 10.0 80 131-217 116-198 (203)
256 PF11848 DUF3368: Domain of un 83.0 6.2 0.00014 22.4 5.1 32 98-129 13-44 (48)
257 COG3898 Uncharacterized membra 82.5 30 0.00066 29.6 15.5 90 63-157 128-224 (531)
258 PF13374 TPR_10: Tetratricopep 82.2 4.4 9.6E-05 21.5 4.3 27 123-149 3-29 (42)
259 KOG2114 Vacuolar assembly/sort 81.7 12 0.00026 34.9 8.7 116 92-224 339-458 (933)
260 PRK15331 chaperone protein Sic 81.5 19 0.00042 26.6 12.2 88 132-226 47-134 (165)
261 PRK15180 Vi polysaccharide bio 81.3 27 0.00058 30.8 10.2 117 100-225 302-419 (831)
262 PF11663 Toxin_YhaV: Toxin wit 80.6 1.6 3.5E-05 30.9 2.4 28 101-130 109-136 (140)
263 PRK13342 recombination factor 80.3 38 0.00082 29.3 16.8 71 124-194 229-302 (413)
264 PF07163 Pex26: Pex26 protein; 80.3 30 0.00065 28.1 10.3 92 94-185 90-181 (309)
265 KOG1127 TPR repeat-containing 80.2 59 0.0013 31.5 13.6 136 97-241 502-637 (1238)
266 PF04184 ST7: ST7 protein; In 80.2 23 0.00049 31.2 9.5 115 58-172 203-346 (539)
267 KOG1538 Uncharacterized conser 80.1 22 0.00047 32.5 9.5 67 178-255 763-840 (1081)
268 PF13281 DUF4071: Domain of un 80.1 36 0.00079 29.0 17.5 163 63-227 149-335 (374)
269 PF10366 Vps39_1: Vacuolar sor 79.8 14 0.0003 25.2 6.9 42 175-225 26-67 (108)
270 PF11663 Toxin_YhaV: Toxin wit 79.7 2 4.3E-05 30.5 2.6 33 208-242 106-138 (140)
271 COG4235 Cytochrome c biogenesi 79.6 32 0.00069 28.0 11.6 104 92-205 161-268 (287)
272 PF12926 MOZART2: Mitotic-spin 79.6 11 0.00023 24.5 5.7 44 108-151 29-72 (88)
273 KOG0624 dsRNA-activated protei 79.3 37 0.0008 28.6 11.8 188 33-226 164-370 (504)
274 PRK11639 zinc uptake transcrip 78.7 15 0.00032 27.4 7.3 62 79-140 15-78 (169)
275 PF09454 Vps23_core: Vps23 cor 78.7 4.7 0.0001 24.7 3.8 58 193-251 4-61 (65)
276 PRK11639 zinc uptake transcrip 78.5 8.6 0.00019 28.6 6.0 64 187-251 16-79 (169)
277 PF02259 FAT: FAT domain; Int 78.5 37 0.0008 28.1 11.1 67 154-225 143-212 (352)
278 KOG2610 Uncharacterized conser 78.3 39 0.00085 28.3 11.6 118 99-224 115-236 (491)
279 KOG0687 26S proteasome regulat 77.8 40 0.00086 28.1 11.8 154 69-224 36-208 (393)
280 PF10300 DUF3808: Protein of u 77.4 51 0.0011 29.1 16.2 155 63-225 196-375 (468)
281 COG0735 Fur Fe2+/Zn2+ uptake r 77.2 13 0.00028 26.9 6.4 67 183-250 7-73 (145)
282 KOG4162 Predicted calmodulin-b 76.3 67 0.0015 30.0 14.2 123 125-256 653-778 (799)
283 PHA02875 ankyrin repeat protei 76.1 15 0.00032 31.5 7.6 192 35-256 10-223 (413)
284 COG1729 Uncharacterized protei 76.0 39 0.00085 27.1 11.8 95 124-226 144-244 (262)
285 PF08311 Mad3_BUB1_I: Mad3/BUB 75.6 23 0.0005 24.9 7.2 43 105-147 81-124 (126)
286 TIGR03504 FimV_Cterm FimV C-te 74.9 7.8 0.00017 21.6 3.7 25 203-227 5-29 (44)
287 cd00280 TRFH Telomeric Repeat 74.8 29 0.00064 26.3 7.6 65 70-137 84-158 (200)
288 TIGR02508 type_III_yscG type I 74.6 23 0.00051 23.9 8.2 84 71-161 21-106 (115)
289 PRK15180 Vi polysaccharide bio 74.4 42 0.0009 29.6 9.4 119 128-255 295-414 (831)
290 PF11838 ERAP1_C: ERAP1-like C 74.3 47 0.001 27.2 10.9 143 71-222 146-304 (324)
291 PHA02875 ankyrin repeat protei 74.1 21 0.00046 30.6 8.1 149 63-233 73-231 (413)
292 PF02847 MA3: MA3 domain; Int 74.0 18 0.00038 24.6 6.2 60 92-153 7-68 (113)
293 COG4649 Uncharacterized protei 73.8 36 0.00078 25.7 12.9 133 58-195 60-200 (221)
294 KOG0548 Molecular co-chaperone 73.8 65 0.0014 28.6 15.6 105 130-244 366-471 (539)
295 PRK09462 fur ferric uptake reg 73.0 25 0.00053 25.4 7.0 61 79-139 6-69 (148)
296 PF07721 TPR_4: Tetratricopept 72.9 8.5 0.00018 18.4 3.2 20 202-221 6-25 (26)
297 PF00515 TPR_1: Tetratricopept 72.8 10 0.00023 19.1 4.6 28 198-225 2-29 (34)
298 TIGR03504 FimV_Cterm FimV C-te 72.5 8.7 0.00019 21.5 3.5 25 128-152 5-29 (44)
299 KOG0991 Replication factor C, 72.2 12 0.00025 29.7 5.3 49 119-169 236-284 (333)
300 PF11846 DUF3366: Domain of un 71.9 22 0.00047 26.9 6.9 33 118-150 140-172 (193)
301 TIGR02561 HrpB1_HrpK type III 71.8 16 0.00034 26.6 5.5 94 68-165 23-120 (153)
302 PRK10564 maltose regulon perip 71.4 13 0.00028 30.4 5.6 49 117-165 251-300 (303)
303 KOG4077 Cytochrome c oxidase, 71.0 34 0.00074 24.2 7.4 60 105-165 67-126 (149)
304 PF11846 DUF3366: Domain of un 70.7 41 0.00089 25.4 8.2 52 175-230 124-175 (193)
305 PF14689 SPOB_a: Sensor_kinase 70.5 14 0.00029 22.4 4.4 46 178-225 6-51 (62)
306 KOG2796 Uncharacterized conser 69.5 59 0.0013 26.4 12.7 100 122-226 177-281 (366)
307 COG3118 Thioredoxin domain-con 69.1 63 0.0014 26.5 14.0 143 94-246 141-286 (304)
308 PF09670 Cas_Cas02710: CRISPR- 69.0 74 0.0016 27.2 13.8 57 94-151 138-198 (379)
309 KOG0548 Molecular co-chaperone 68.9 85 0.0018 27.9 13.9 156 93-252 230-412 (539)
310 COG4700 Uncharacterized protei 68.2 52 0.0011 25.2 17.4 144 92-246 61-207 (251)
311 PRK09462 fur ferric uptake reg 68.0 31 0.00068 24.9 6.7 64 186-250 6-70 (148)
312 KOG1550 Extracellular protein 67.1 98 0.0021 28.0 15.2 157 65-228 259-428 (552)
313 PF10475 DUF2450: Protein of u 66.9 70 0.0015 26.2 9.4 109 93-217 104-217 (291)
314 cd08819 CARD_MDA5_2 Caspase ac 66.5 34 0.00073 22.4 7.2 69 180-254 20-88 (88)
315 KOG4162 Predicted calmodulin-b 66.5 1.1E+02 0.0025 28.5 17.0 161 93-256 329-537 (799)
316 PRK14700 recombination factor 66.2 74 0.0016 26.2 10.7 121 63-194 73-198 (300)
317 PF09613 HrpB1_HrpK: Bacterial 66.2 51 0.0011 24.3 11.9 63 68-134 23-89 (160)
318 COG5108 RPO41 Mitochondrial DN 66.0 62 0.0014 29.9 9.0 77 92-168 33-114 (1117)
319 COG5108 RPO41 Mitochondrial DN 65.9 55 0.0012 30.2 8.6 80 127-209 33-115 (1117)
320 KOG0543 FKBP-type peptidyl-pro 65.9 86 0.0019 26.9 12.7 122 63-190 216-354 (397)
321 KOG4555 TPR repeat-containing 65.8 47 0.001 23.8 10.3 54 96-150 52-105 (175)
322 PF11817 Foie-gras_1: Foie gra 65.7 32 0.00069 27.3 6.9 56 93-148 184-244 (247)
323 COG2256 MGS1 ATPase related to 65.4 90 0.002 26.9 14.8 77 119-195 243-322 (436)
324 cd07153 Fur_like Ferric uptake 65.0 16 0.00035 24.9 4.5 48 203-250 6-53 (116)
325 PF13174 TPR_6: Tetratricopept 64.7 11 0.00024 18.6 2.8 24 203-226 6-29 (33)
326 COG4003 Uncharacterized protei 64.0 21 0.00044 23.0 4.2 26 92-117 36-61 (98)
327 PF01475 FUR: Ferric uptake re 63.6 8.6 0.00019 26.6 2.9 47 92-138 12-58 (120)
328 PHA03100 ankyrin repeat protei 63.5 77 0.0017 27.7 9.5 59 92-156 143-203 (480)
329 cd07153 Fur_like Ferric uptake 62.7 28 0.0006 23.7 5.4 48 92-139 5-52 (116)
330 PF12796 Ank_2: Ankyrin repeat 62.5 21 0.00046 22.7 4.6 14 144-157 41-54 (89)
331 PF07163 Pex26: Pex26 protein; 62.1 86 0.0019 25.6 9.6 112 52-167 80-199 (309)
332 COG3118 Thioredoxin domain-con 61.9 89 0.0019 25.7 15.1 146 63-217 142-292 (304)
333 COG4455 ImpE Protein of avirul 61.5 79 0.0017 24.9 7.9 72 93-165 7-80 (273)
334 PF10475 DUF2450: Protein of u 61.1 91 0.002 25.5 9.1 76 92-172 132-212 (291)
335 PF01475 FUR: Ferric uptake re 60.3 14 0.00031 25.5 3.5 51 201-251 11-61 (120)
336 TIGR02508 type_III_yscG type I 60.2 51 0.0011 22.3 8.4 44 178-227 55-98 (115)
337 PF10579 Rapsyn_N: Rapsyn N-te 60.2 41 0.00088 21.6 5.1 15 136-150 20-34 (80)
338 PF09868 DUF2095: Uncharacteri 59.5 56 0.0012 22.6 6.2 27 92-118 66-92 (128)
339 PF14669 Asp_Glu_race_2: Putat 58.7 30 0.00065 26.5 5.0 56 92-147 137-206 (233)
340 PF07719 TPR_2: Tetratricopept 58.6 22 0.00047 17.6 4.6 27 199-225 3-29 (34)
341 KOG2041 WD40 repeat protein [G 58.5 91 0.002 29.1 8.7 30 193-222 848-877 (1189)
342 PF13181 TPR_8: Tetratricopept 58.0 23 0.0005 17.6 4.5 27 199-225 3-29 (34)
343 PRK14956 DNA polymerase III su 57.8 1E+02 0.0023 27.3 9.0 39 121-159 247-285 (484)
344 TIGR02561 HrpB1_HrpK type III 57.7 72 0.0016 23.3 10.4 57 94-152 17-74 (153)
345 COG4455 ImpE Protein of avirul 57.7 93 0.002 24.5 8.0 78 124-207 3-82 (273)
346 PF14689 SPOB_a: Sensor_kinase 57.5 20 0.00042 21.7 3.3 26 125-150 26-51 (62)
347 PF09477 Type_III_YscG: Bacter 57.1 61 0.0013 22.2 9.1 78 69-152 20-99 (116)
348 PHA03100 ankyrin repeat protei 57.0 69 0.0015 28.0 8.1 145 63-231 40-203 (480)
349 PF13431 TPR_17: Tetratricopep 56.3 14 0.0003 19.1 2.2 22 121-142 12-33 (34)
350 KOG2041 WD40 repeat protein [G 56.2 1.8E+02 0.0039 27.3 13.8 135 68-224 747-905 (1189)
351 KOG1585 Protein required for f 55.3 1.1E+02 0.0024 24.6 13.3 56 199-255 192-250 (308)
352 smart00777 Mad3_BUB1_I Mad3/BU 55.0 72 0.0016 22.5 7.5 42 105-146 81-123 (125)
353 KOG4555 TPR repeat-containing 54.5 79 0.0017 22.7 10.9 52 63-114 51-104 (175)
354 PF04097 Nic96: Nup93/Nic96; 54.1 1.8E+02 0.0039 26.8 11.8 37 63-99 119-157 (613)
355 KOG2908 26S proteasome regulat 53.9 1.3E+02 0.0029 25.2 10.5 89 124-215 77-175 (380)
356 PF13934 ELYS: Nuclear pore co 53.7 1.1E+02 0.0023 24.1 10.3 113 83-211 72-186 (226)
357 KOG0276 Vesicle coat complex C 52.9 1.1E+02 0.0023 28.0 8.1 105 93-223 643-747 (794)
358 PF10366 Vps39_1: Vacuolar sor 52.4 28 0.00061 23.7 3.8 28 123-150 40-67 (108)
359 PF09454 Vps23_core: Vps23 cor 51.6 54 0.0012 20.0 5.3 50 119-169 5-54 (65)
360 PF02847 MA3: MA3 domain; Int 51.4 73 0.0016 21.5 7.6 64 126-194 6-69 (113)
361 KOG4567 GTPase-activating prot 50.5 1.3E+02 0.0028 25.0 7.7 70 143-222 264-343 (370)
362 KOG4567 GTPase-activating prot 50.5 68 0.0015 26.6 6.2 59 106-169 262-320 (370)
363 PF08870 DUF1832: Domain of un 50.2 42 0.00092 23.1 4.4 88 139-246 6-96 (113)
364 PF09868 DUF2095: Uncharacteri 49.6 85 0.0018 21.7 6.1 44 191-241 61-104 (128)
365 PF12926 MOZART2: Mitotic-spin 48.9 74 0.0016 20.8 5.9 44 183-226 29-72 (88)
366 COG3947 Response regulator con 48.3 1.6E+02 0.0034 24.4 13.7 141 104-252 150-333 (361)
367 PF09477 Type_III_YscG: Bacter 47.5 91 0.002 21.4 7.9 77 103-191 22-98 (116)
368 KOG2610 Uncharacterized conser 46.4 1.8E+02 0.004 24.6 12.6 151 64-224 112-274 (491)
369 PF10345 Cohesin_load: Cohesin 46.1 2.4E+02 0.0052 25.9 15.1 158 63-224 68-252 (608)
370 PF10579 Rapsyn_N: Rapsyn N-te 46.1 79 0.0017 20.3 5.9 50 94-144 14-65 (80)
371 PF09613 HrpB1_HrpK: Bacterial 45.0 1.3E+02 0.0027 22.3 12.6 57 93-151 16-73 (160)
372 KOG1920 IkappaB kinase complex 44.7 1.6E+02 0.0035 29.2 8.5 156 96-251 860-1058(1265)
373 KOG0991 Replication factor C, 44.5 1.6E+02 0.0036 23.5 12.7 46 195-242 237-282 (333)
374 COG0457 NrfG FOG: TPR repeat [ 44.2 1.2E+02 0.0027 22.0 20.0 184 63-254 67-258 (291)
375 KOG2063 Vacuolar assembly/sort 43.4 3.2E+02 0.0068 26.5 10.3 120 123-245 505-639 (877)
376 PHA02878 ankyrin repeat protei 42.8 2.3E+02 0.0051 24.8 10.5 21 63-83 75-95 (477)
377 KOG0890 Protein kinase of the 42.3 1.5E+02 0.0032 31.8 8.3 145 64-221 1392-1542(2382)
378 KOG0403 Neoplastic transformat 42.3 2.4E+02 0.0053 24.9 9.4 100 93-211 515-616 (645)
379 TIGR02710 CRISPR-associated pr 42.2 2.2E+02 0.0048 24.4 13.2 56 93-148 136-197 (380)
380 cd08780 Death_TRADD Death Doma 42.0 99 0.0021 20.3 4.9 56 198-256 33-89 (90)
381 PRK13342 recombination factor 41.9 2.3E+02 0.005 24.5 14.8 36 211-246 244-279 (413)
382 PF05664 DUF810: Protein of un 41.3 2.1E+02 0.0046 26.7 8.6 85 152-237 212-307 (677)
383 PF14744 WASH-7_mid: WASH comp 40.9 98 0.0021 26.0 5.8 31 138-168 282-312 (350)
384 PF07079 DUF1347: Protein of u 40.4 2.6E+02 0.0057 24.7 16.9 188 63-255 87-321 (549)
385 smart00804 TAP_C C-terminal do 40.3 25 0.00054 21.4 1.8 14 103-116 41-54 (63)
386 KOG0159 Cytochrome P450 CYP11/ 40.2 2.8E+02 0.006 24.9 9.5 36 212-247 313-348 (519)
387 PF13934 ELYS: Nuclear pore co 39.9 1.8E+02 0.004 22.8 10.7 109 52-169 74-184 (226)
388 cd00245 Glm_e Coenzyme B12-dep 39.9 2.1E+02 0.0045 25.1 7.9 155 68-232 24-202 (428)
389 COG5210 GTPase-activating prot 39.8 2.7E+02 0.006 24.8 11.1 60 106-165 361-420 (496)
390 PF11838 ERAP1_C: ERAP1-like C 39.6 2.1E+02 0.0046 23.4 17.9 16 175-190 143-158 (324)
391 cd08819 CARD_MDA5_2 Caspase ac 39.5 1.1E+02 0.0024 20.1 7.1 38 175-217 49-86 (88)
392 PF04053 Coatomer_WDAD: Coatom 39.4 2.7E+02 0.0058 24.5 14.2 117 94-227 268-403 (443)
393 smart00028 TPR Tetratricopepti 39.2 42 0.00092 15.2 3.6 27 199-225 3-29 (34)
394 smart00164 TBC Domain in Tre-2 39.0 1.1E+02 0.0024 22.9 5.9 114 71-193 72-198 (199)
395 PHA02874 ankyrin repeat protei 39.0 2.5E+02 0.0054 24.3 8.6 16 63-78 40-55 (434)
396 KOG2297 Predicted translation 38.7 2.3E+02 0.005 23.6 8.6 19 233-251 322-340 (412)
397 PRK08691 DNA polymerase III su 38.4 3.5E+02 0.0075 25.5 11.0 85 139-231 181-279 (709)
398 PF02607 B12-binding_2: B12 bi 38.1 99 0.0022 19.2 6.3 40 133-172 12-51 (79)
399 COG2405 Predicted nucleic acid 37.6 92 0.002 22.5 4.5 27 178-204 125-151 (157)
400 PF08780 NTase_sub_bind: Nucle 37.4 1.4E+02 0.0031 20.8 6.1 75 139-221 7-83 (124)
401 PF11740 KfrA_N: Plasmid repli 36.6 1.4E+02 0.003 20.4 6.0 44 72-116 4-47 (120)
402 PF12816 Vps8: Golgi CORVET co 36.4 72 0.0016 24.4 4.3 59 155-223 20-78 (196)
403 PF00531 Death: Death domain; 36.2 1E+02 0.0022 19.3 4.4 57 85-144 23-79 (83)
404 PF08461 HTH_12: Ribonuclease 35.9 85 0.0018 19.1 3.8 44 204-247 4-47 (66)
405 COG5159 RPN6 26S proteasome re 35.8 2.5E+02 0.0055 23.2 11.2 23 201-223 129-151 (421)
406 smart00386 HAT HAT (Half-A-TPR 35.7 56 0.0012 15.6 3.8 14 137-150 2-15 (33)
407 COG2405 Predicted nucleic acid 35.6 1.1E+02 0.0025 22.0 4.7 43 199-242 112-154 (157)
408 KOG4279 Serine/threonine prote 35.5 4E+02 0.0087 25.4 9.8 127 75-206 183-332 (1226)
409 PHA02798 ankyrin-like protein; 35.4 2.7E+02 0.0058 24.6 8.3 51 105-157 87-140 (489)
410 KOG4648 Uncharacterized conser 35.3 35 0.00075 28.7 2.5 45 207-253 107-152 (536)
411 smart00638 LPD_N Lipoprotein N 35.3 3.4E+02 0.0074 24.6 15.6 34 101-138 323-356 (574)
412 PF14840 DNA_pol3_delt_C: Proc 35.0 70 0.0015 22.5 3.7 33 94-127 5-37 (125)
413 cd07229 Pat_TGL3_like Triacylg 34.8 1.7E+02 0.0037 25.2 6.6 136 108-249 100-254 (391)
414 cd00280 TRFH Telomeric Repeat 34.6 2.1E+02 0.0045 21.9 11.2 49 178-226 85-140 (200)
415 PRK09857 putative transposase; 34.4 2.6E+02 0.0057 22.9 8.9 66 160-231 209-274 (292)
416 KOG2058 Ypt/Rab GTPase activat 34.4 3.2E+02 0.007 24.0 8.8 70 93-169 292-361 (436)
417 PF08424 NRDE-2: NRDE-2, neces 33.7 2.8E+02 0.006 23.0 12.5 118 71-193 47-185 (321)
418 KOG0550 Molecular chaperone (D 33.4 3.3E+02 0.0072 23.8 10.4 120 63-190 211-349 (486)
419 PF03745 DUF309: Domain of unk 33.3 1.1E+02 0.0024 18.4 5.5 47 98-144 10-61 (62)
420 cd08318 Death_NMPP84 Death dom 32.9 85 0.0018 20.3 3.6 40 213-255 46-86 (86)
421 PF07035 Mic1: Colon cancer-as 32.4 2.1E+02 0.0046 21.3 15.5 135 74-227 13-150 (167)
422 PF08311 Mad3_BUB1_I: Mad3/BUB 32.3 1.8E+02 0.0039 20.4 7.5 42 180-221 81-123 (126)
423 KOG1538 Uncharacterized conser 32.3 3.7E+02 0.008 25.2 8.3 89 124-228 749-848 (1081)
424 PF07443 HARP: HepA-related pr 32.0 20 0.00044 21.1 0.5 32 101-132 6-37 (55)
425 PHA02917 ankyrin-like protein; 31.9 4.3E+02 0.0093 24.7 9.7 81 69-157 46-131 (661)
426 TIGR01529 argR_whole arginine 31.8 87 0.0019 22.7 3.9 37 204-240 7-43 (146)
427 smart00544 MA3 Domain in DAP-5 31.8 1.6E+02 0.0035 19.8 10.5 59 92-152 7-67 (113)
428 PRK10304 ferritin; Provisional 31.6 2.2E+02 0.0047 21.1 6.0 16 105-120 53-68 (165)
429 cd01041 Rubrerythrin Rubreryth 31.4 1.9E+02 0.004 20.3 6.5 57 105-172 49-105 (134)
430 PF14853 Fis1_TPR_C: Fis1 C-te 31.3 1.1E+02 0.0024 17.7 5.0 34 205-240 9-42 (53)
431 PF14162 YozD: YozD-like prote 31.1 1.1E+02 0.0024 17.6 4.3 17 181-197 14-30 (57)
432 KOG2536 MAM33, mitochondrial m 31.0 1.7E+02 0.0037 23.5 5.5 36 79-114 223-258 (263)
433 COG3898 Uncharacterized membra 31.0 3.6E+02 0.0078 23.5 18.7 50 66-115 165-216 (531)
434 PRK14951 DNA polymerase III su 30.8 4.4E+02 0.0095 24.4 12.0 85 139-231 186-284 (618)
435 PF14840 DNA_pol3_delt_C: Proc 30.7 55 0.0012 23.0 2.7 29 134-162 9-37 (125)
436 PF12793 SgrR_N: Sugar transpo 30.3 1.9E+02 0.004 20.0 8.2 84 144-242 5-107 (115)
437 smart00005 DEATH DEATH domain, 30.2 1.5E+02 0.0032 18.8 6.4 59 83-143 26-84 (88)
438 PRK14963 DNA polymerase III su 30.1 4.1E+02 0.0089 23.9 11.6 86 138-231 177-275 (504)
439 PF15297 CKAP2_C: Cytoskeleton 30.1 3.4E+02 0.0074 23.0 9.8 64 178-243 119-186 (353)
440 COG0320 LipA Lipoate synthase 30.0 42 0.00091 27.2 2.1 31 137-169 195-225 (306)
441 PF11768 DUF3312: Protein of u 29.8 2.3E+02 0.0051 25.5 6.7 21 93-113 414-434 (545)
442 PF02184 HAT: HAT (Half-A-TPR) 29.7 89 0.0019 16.1 2.6 13 138-150 3-15 (32)
443 PF08542 Rep_fac_C: Replicatio 29.5 1.5E+02 0.0034 18.8 6.2 18 212-229 19-36 (89)
444 COG1466 HolA DNA polymerase II 28.5 3.5E+02 0.0076 22.6 8.5 86 109-196 149-242 (334)
445 PRK13341 recombination factor 28.5 5.2E+02 0.011 24.5 18.0 67 128-194 261-330 (725)
446 PF11817 Foie-gras_1: Foie gra 28.4 1.4E+02 0.003 23.7 4.9 52 202-253 183-239 (247)
447 PF03444 HrcA_DNA-bdg: Winged 28.1 1.7E+02 0.0036 18.7 4.4 47 198-249 8-54 (78)
448 KOG0890 Protein kinase of the 28.0 7.6E+02 0.017 27.1 10.5 148 93-254 1389-1540(2382)
449 COG4003 Uncharacterized protei 27.8 1.7E+02 0.0038 18.9 5.2 33 203-236 37-69 (98)
450 cd08315 Death_TRAILR_DR4_DR5 D 27.7 1.9E+02 0.0041 19.2 8.3 68 82-152 27-94 (96)
451 TIGR01503 MthylAspMut_E methyl 27.6 4.1E+02 0.009 23.5 7.7 47 69-115 68-114 (480)
452 KOG3303 Predicted alpha-helica 27.5 2.8E+02 0.006 21.1 6.5 66 139-211 5-74 (192)
453 PRK14956 DNA polymerase III su 27.2 4.6E+02 0.0099 23.5 11.6 88 139-233 183-284 (484)
454 PHA02989 ankyrin repeat protei 27.1 2.9E+02 0.0063 24.4 7.2 17 106-122 87-103 (494)
455 COG3107 LppC Putative lipoprot 26.1 5E+02 0.011 23.6 10.3 79 93-172 69-151 (604)
456 COG5210 GTPase-activating prot 25.9 2.4E+02 0.0052 25.2 6.4 59 182-240 362-420 (496)
457 cd01055 Nonheme_Ferritin nonhe 25.9 1.5E+02 0.0033 21.3 4.4 17 138-154 49-65 (156)
458 PF05664 DUF810: Protein of un 25.9 5.6E+02 0.012 24.1 13.2 84 117-202 212-307 (677)
459 PRK07764 DNA polymerase III su 25.8 6.1E+02 0.013 24.5 11.5 44 104-149 182-226 (824)
460 cd08780 Death_TRADD Death Doma 25.4 2E+02 0.0044 18.9 5.0 50 93-145 38-88 (90)
461 COG1747 Uncharacterized N-term 25.3 5.2E+02 0.011 23.5 16.8 155 63-227 74-235 (711)
462 cd01041 Rubrerythrin Rubreryth 25.3 2E+02 0.0043 20.2 4.8 45 178-223 71-115 (134)
463 cd08789 CARD_IPS-1_RIG-I Caspa 25.2 2E+02 0.0043 18.6 4.4 44 93-141 38-81 (84)
464 PF13877 RPAP3_C: Potential Mo 25.2 2E+02 0.0043 18.7 7.7 27 196-222 64-90 (94)
465 cd00904 Ferritin Ferritin iron 25.0 1E+02 0.0022 22.6 3.3 49 197-246 99-147 (160)
466 COG4105 ComL DNA uptake lipopr 25.0 3.7E+02 0.008 21.7 18.8 162 58-226 36-233 (254)
467 PF12862 Apc5: Anaphase-promot 24.8 2E+02 0.0044 18.6 6.7 53 98-150 9-69 (94)
468 PF04124 Dor1: Dor1-like famil 24.7 1.2E+02 0.0026 25.5 4.1 24 161-189 110-133 (338)
469 PHA02878 ankyrin repeat protei 24.6 3.9E+02 0.0084 23.5 7.5 171 63-256 42-222 (477)
470 PLN03192 Voltage-dependent pot 24.4 3.2E+02 0.0069 26.2 7.2 19 202-220 624-642 (823)
471 KOG0276 Vesicle coat complex C 24.4 5.8E+02 0.013 23.7 11.1 102 64-188 646-747 (794)
472 COG2812 DnaX DNA polymerase II 24.1 5.4E+02 0.012 23.3 10.3 89 138-234 180-282 (515)
473 PRK14136 recX recombination re 24.0 4.2E+02 0.0092 22.0 9.6 99 153-257 158-266 (309)
474 PF11864 DUF3384: Domain of un 23.9 5.1E+02 0.011 22.9 17.7 87 139-225 152-244 (464)
475 KOG4279 Serine/threonine prote 23.8 4.3E+02 0.0093 25.2 7.3 152 63-226 209-395 (1226)
476 PF09670 Cas_Cas02710: CRISPR- 23.8 2.9E+02 0.0063 23.7 6.3 55 131-189 140-196 (379)
477 PRK10304 ferritin; Provisional 23.1 1.8E+02 0.0039 21.5 4.3 96 138-247 51-146 (165)
478 PLN03192 Voltage-dependent pot 23.0 4.3E+02 0.0092 25.4 7.8 112 126-255 527-642 (823)
479 PF05119 Terminase_4: Phage te 22.9 1.1E+02 0.0024 20.1 2.9 42 144-194 8-49 (100)
480 PF04090 RNA_pol_I_TF: RNA pol 22.8 3.6E+02 0.0079 20.8 7.0 57 92-149 46-103 (199)
481 cd04445 DEP_PLEK1 DEP (Disheve 22.7 2.3E+02 0.005 19.0 4.2 57 96-152 5-64 (99)
482 KOG2582 COP9 signalosome, subu 22.6 5E+02 0.011 22.3 7.4 53 175-227 290-346 (422)
483 PRK14958 DNA polymerase III su 22.6 5.7E+02 0.012 23.0 12.1 75 149-231 192-279 (509)
484 PF06685 DUF1186: Protein of u 22.5 4E+02 0.0087 21.4 6.4 63 122-186 127-195 (249)
485 PHA02798 ankyrin-like protein; 22.2 5.5E+02 0.012 22.7 8.4 130 92-231 38-175 (489)
486 COG0790 FOG: TPR repeat, SEL1 21.9 4.2E+02 0.0091 21.2 18.4 50 70-119 92-145 (292)
487 KOG1147 Glutamyl-tRNA syntheta 21.9 2.3E+02 0.005 25.6 5.2 69 109-190 255-331 (712)
488 PRK13341 recombination factor 21.6 7E+02 0.015 23.7 13.9 51 196-247 258-308 (725)
489 cd01056 Euk_Ferritin eukaryoti 21.5 1.1E+02 0.0024 22.4 3.0 20 138-157 51-70 (161)
490 PF10155 DUF2363: Uncharacteri 21.5 3E+02 0.0065 19.4 11.4 110 70-188 4-124 (126)
491 PF14401 RLAN: RimK-like ATPgr 21.3 23 0.0005 25.9 -0.7 73 184-256 37-109 (153)
492 cd07229 Pat_TGL3_like Triacylg 21.2 5.5E+02 0.012 22.2 7.9 129 76-214 100-254 (391)
493 PF07304 SRA1: Steroid recepto 21.1 2.3E+02 0.005 20.8 4.5 50 102-151 69-119 (157)
494 PF12002 MgsA_C: MgsA AAA+ ATP 21.0 3.6E+02 0.0079 20.1 9.8 57 137-193 3-59 (168)
495 smart00777 Mad3_BUB1_I Mad3/BU 20.8 3.1E+02 0.0068 19.3 8.1 40 182-221 83-123 (125)
496 KOG2223 Uncharacterized conser 20.6 5.9E+02 0.013 22.5 9.8 38 113-150 465-502 (586)
497 PF02631 RecX: RecX family; I 20.6 2.9E+02 0.0064 18.9 10.8 48 106-154 11-58 (121)
498 KOG0687 26S proteasome regulat 20.3 5.4E+02 0.012 21.8 11.8 90 93-189 110-208 (393)
499 KOG1166 Mitotic checkpoint ser 20.3 4E+02 0.0086 26.3 6.8 60 99-158 90-150 (974)
500 KOG0989 Replication factor C, 20.3 5.2E+02 0.011 21.7 10.2 24 208-231 266-289 (346)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.5e-37 Score=283.91 Aligned_cols=232 Identities=17% Similarity=0.223 Sum_probs=173.2
Q ss_pred CcccccchhhhhhhhcccCCCCccchhhccc----CCCCCCcccccc--ccccCCCCHHHHHHHHHHHHhCCCCCcHH--
Q 043311 20 LRITNTRVNATLQRSLSSSSDQPTKKYVNTK----SKLPPPYDPFKK--VVDEEPTDPRNLQEIFHKMRTEGLTNNAV-- 91 (257)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~p~~~~~~~--~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-- 91 (257)
+.|+..+|+.++..+++.+..+.+.+++.+. .++.|+..+|+. .+|++.|++++|.++|+.|.+.|+.|+..
T Consensus 538 v~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~ty 617 (1060)
T PLN03218 538 VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVY 617 (1060)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHH
Confidence 4455666666666666666666666553322 456666666665 66777777777777777777777766644
Q ss_pred -HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 043311 92 -KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAA 170 (257)
Q Consensus 92 -~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~ 170 (257)
++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|+++|++|.+.|+.||..+|+++|.+|++
T Consensus 618 nsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k- 696 (1060)
T PLN03218 618 TIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSN- 696 (1060)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-
Confidence 477777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred cCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhh
Q 043311 171 ADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGV 250 (257)
Q Consensus 171 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 250 (257)
.|.+++|.++|++|.+.|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|.+.|+.+.
T Consensus 697 ----~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~ 772 (1060)
T PLN03218 697 ----AKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADV 772 (1060)
T ss_pred ----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 4448888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHhhhc
Q 043311 251 INILFG 256 (257)
Q Consensus 251 ~~~l~~ 256 (257)
|.++|+
T Consensus 773 A~~l~~ 778 (1060)
T PLN03218 773 GLDLLS 778 (1060)
T ss_pred HHHHHH
Confidence 888775
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.7e-37 Score=283.66 Aligned_cols=230 Identities=20% Similarity=0.241 Sum_probs=163.0
Q ss_pred ccccchhhhhhhhcccCCCCccchh--hcccCCCCCCcccccc--ccccCCCCHHHHHHHHHHHHhCCCCCcHH---HHH
Q 043311 22 ITNTRVNATLQRSLSSSSDQPTKKY--VNTKSKLPPPYDPFKK--VVDEEPTDPRNLQEIFHKMRTEGLTNNAV---KMF 94 (257)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~p~~~~~~~--~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~ll 94 (257)
|+..+++.++..++..+....+.++ .+...++.|+..+|+. .+|++.|+++.|.++|++|.+.|+.|+.. ++|
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI 514 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4556677777777777777777666 4445667777777766 77777788888888888887777777765 377
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhccC
Q 043311 95 DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA--SGVAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~g~~~~~~t~~~ll~~~~~~~~ 172 (257)
.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|+++|++|.. .|+.||..||+++|.+|++.|+
T Consensus 515 ~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ 594 (1060)
T PLN03218 515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ 594 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCC
Confidence 77777777777777777777777777777777777777777777777777777765 4677777777777777777444
Q ss_pred CcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHH
Q 043311 173 GNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVIN 252 (257)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~ 252 (257)
+++|.++|++|.+.|+.|+..+||++|.+|++.|++++|.++|++|.+.|+.||..||+++|.+|.+.|+.+.|.
T Consensus 595 -----ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~ 669 (1060)
T PLN03218 595 -----VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAF 669 (1060)
T ss_pred -----HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred hhhc
Q 043311 253 ILFG 256 (257)
Q Consensus 253 ~l~~ 256 (257)
++|+
T Consensus 670 ~l~~ 673 (1060)
T PLN03218 670 EILQ 673 (1060)
T ss_pred HHHH
Confidence 6553
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.2e-34 Score=259.07 Aligned_cols=224 Identities=18% Similarity=0.180 Sum_probs=147.8
Q ss_pred ccccchhhhhhhhcccCCCCccchhhcccCCCCCCcccccc--ccccCCCCHHHHHHHHHHHHhCCCCCcHH---HHHHH
Q 043311 22 ITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKK--VVDEEPTDPRNLQEIFHKMRTEGLTNNAV---KMFDA 96 (257)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~--~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~ll~~ 96 (257)
++...+++++...++.+..+.+.+++.... .++..+|+. ..|++.|++++|.++|++|.+.|+.|+.. +++.+
T Consensus 257 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~--~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a 334 (697)
T PLN03081 257 GDTFVSCALIDMYSKCGDIEDARCVFDGMP--EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRI 334 (697)
T ss_pred ccceeHHHHHHHHHHCCCHHHHHHHHHhCC--CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 344455566666666666666666654433 234444444 66677777777777777777777777655 36667
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcch
Q 043311 97 LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK 176 (257)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~ 176 (257)
|++.|++++|.+++.+|.+.|+.||..+||+||++|++.|++++|.++|++|. +||..|||+||.+|++ .|
T Consensus 335 ~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~-----~G 405 (697)
T PLN03081 335 FSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGN-----HG 405 (697)
T ss_pred HHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHH-----cC
Confidence 77777777777777777777766666666666666666666666666666664 3566666666666666 33
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHhhcCCchhhHHhhh
Q 043311 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA-KGFVPDEKAVKEALIDKRGQGFRGVINILF 255 (257)
Q Consensus 177 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~ 255 (257)
+.++|.++|++|.+.|+.||..||+++|.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++.++.+.|..+.|.++|
T Consensus 406 ~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~ 485 (697)
T PLN03081 406 RGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMI 485 (697)
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHH
Confidence 3677777777777777777777777777777777777777777777764 367777777777777777777777766665
Q ss_pred c
Q 043311 256 G 256 (257)
Q Consensus 256 ~ 256 (257)
+
T Consensus 486 ~ 486 (697)
T PLN03081 486 R 486 (697)
T ss_pred H
Confidence 4
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.1e-33 Score=255.56 Aligned_cols=194 Identities=16% Similarity=0.181 Sum_probs=154.5
Q ss_pred CCCCcccccc--ccccCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043311 53 LPPPYDPFKK--VVDEEPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130 (257)
Q Consensus 53 ~~p~~~~~~~--~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 130 (257)
+.|+...++. ..|++.|++++|.++|++|...+ ...++++|.+|++.|++++|.++|++|.+.|+.||..||+++|.
T Consensus 255 ~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~-~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~ 333 (697)
T PLN03081 255 VVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKT-TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIR 333 (697)
T ss_pred CCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCC-hhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3344444443 56667777777777777775532 22344577777777777777777777777777777777777777
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 043311 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210 (257)
Q Consensus 131 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 210 (257)
+|++.|++++|.+++..|.+.|+.||..+|+++|.+|++ +|++++|.++|++|. .||..+||+||.+|++.
T Consensus 334 a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k-----~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~ 404 (697)
T PLN03081 334 IFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK-----WGRMEDARNVFDRMP----RKNLISWNALIAGYGNH 404 (697)
T ss_pred HHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHH-----CCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHc
Confidence 777777777777777777777777777777777777777 555999999999885 47999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 211 QKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 211 ~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
|+.++|.++|++|.+.|+.||..||+++|.+|.+.|..+.+.++|+
T Consensus 405 G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~ 450 (697)
T PLN03081 405 GRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQ 450 (697)
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999986
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.4e-32 Score=253.54 Aligned_cols=233 Identities=19% Similarity=0.169 Sum_probs=141.4
Q ss_pred cccccchhhhhhhhcccCCCCccchhhcccCCCCCCcccccc--ccccCCCCHHHHHHHHHHHHhCCCCCcHH---HHHH
Q 043311 21 RITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKK--VVDEEPTDPRNLQEIFHKMRTEGLTNNAV---KMFD 95 (257)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~--~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~ll~ 95 (257)
.++..++++++...++.+..+.+.+++.+.. .|+..+|+. ..|++.|++++|.++|++|.+.|+.|+.. +++.
T Consensus 320 ~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~--~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~ 397 (857)
T PLN03077 320 AVDVSVCNSLIQMYLSLGSWGEAEKVFSRME--TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLS 397 (857)
T ss_pred ccchHHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHH
Confidence 3444445555555555555555555544332 233344444 55555566666666666665555555543 2455
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-------------------------------hHHHHHH
Q 043311 96 ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ-------------------------------GKEALRV 144 (257)
Q Consensus 96 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~-------------------------------~~~a~~~ 144 (257)
+|++.|+++.|.++++.|.+.|+.|+..+||+||++|++.|+ .++|+.+
T Consensus 398 a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~l 477 (857)
T PLN03077 398 ACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIF 477 (857)
T ss_pred HHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHH
Confidence 555555555555555555555544444444444444444444 4444444
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhccC----------------------------------------------------
Q 043311 145 FMRMLASGVAPNAYTYAVLIKGLAAAAD---------------------------------------------------- 172 (257)
Q Consensus 145 ~~~m~~~g~~~~~~t~~~ll~~~~~~~~---------------------------------------------------- 172 (257)
|++|.. +++||..||+.+|.+|++.|+
T Consensus 478 f~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s 556 (857)
T PLN03077 478 FRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVS 556 (857)
T ss_pred HHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhh
Confidence 555543 356666665555555444332
Q ss_pred --------CcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHhh
Q 043311 173 --------GNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK-AKGFVPDEKAVKEALIDKR 243 (257)
Q Consensus 173 --------~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~-~~g~~p~~~t~~~ll~~~~ 243 (257)
...|+.++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|. +.|+.||..+|+.++.++.
T Consensus 557 ~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~ 636 (857)
T PLN03077 557 WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLG 636 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 0135577888888888888888888888888888888888888888888887 5588888888888888888
Q ss_pred cCCchhhHHhhhc
Q 043311 244 GQGFRGVINILFG 256 (257)
Q Consensus 244 ~~g~~~~~~~l~~ 256 (257)
+.|+.++|+++++
T Consensus 637 r~G~~~eA~~~~~ 649 (857)
T PLN03077 637 RAGKLTEAYNFIN 649 (857)
T ss_pred hCCCHHHHHHHHH
Confidence 8888888887775
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.4e-32 Score=252.08 Aligned_cols=186 Identities=18% Similarity=0.167 Sum_probs=112.1
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHH---HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGK 139 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 139 (257)
..|++.|++++|.++|++|.+.|+.|+.. +++.+|++.|+++.+.+++..|.+.|+.||..+||+||.+|++.|+++
T Consensus 261 ~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~ 340 (857)
T PLN03077 261 SGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWG 340 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHH
Confidence 44444444444444444444444444433 244444444444444444444444444445555555555555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 043311 140 EALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGL 219 (257)
Q Consensus 140 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~ 219 (257)
+|.++|++|. .||..+||++|.+|++ .|.+++|.++|++|.+.|+.||..||+++|.+|++.|+++.|.++
T Consensus 341 ~A~~vf~~m~----~~d~~s~n~li~~~~~-----~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l 411 (857)
T PLN03077 341 EAEKVFSRME----TKDAVSWTAMISGYEK-----NGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKL 411 (857)
T ss_pred HHHHHHhhCC----CCCeeeHHHHHHHHHh-----CCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHH
Confidence 5555554443 3444455555555555 344777777777777777777777777777777777777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 220 LQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 220 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
++.|.+.|+.|+..++++||.+|.+.|+.+.|.++|++
T Consensus 412 ~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~ 449 (857)
T PLN03077 412 HELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHN 449 (857)
T ss_pred HHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77777777777777777777777777777777777753
No 7
>PF13041 PPR_2: PPR repeat family
Probab=99.64 E-value=6.1e-16 Score=91.42 Aligned_cols=50 Identities=44% Similarity=0.818 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043311 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169 (257)
Q Consensus 120 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~ 169 (257)
||+.+||++|.+|++.|++++|+++|++|.+.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78888999999999999999999999999988999999999999988874
No 8
>PF13041 PPR_2: PPR repeat family
Probab=99.60 E-value=4.9e-15 Score=87.52 Aligned_cols=50 Identities=26% Similarity=0.440 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 043311 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRG 244 (257)
Q Consensus 195 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 244 (257)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67777777777777777777777777777777777777777777777753
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.54 E-value=1.1e-12 Score=111.40 Aligned_cols=218 Identities=12% Similarity=0.076 Sum_probs=131.2
Q ss_pred hhhhhhcccCCCCccchhhcccCCCCCCc-ccccc--ccccCCCCHHHHHHHHHHHHhCCCCCcHH-------HHHHHHH
Q 043311 29 ATLQRSLSSSSDQPTKKYVNTKSKLPPPY-DPFKK--VVDEEPTDPRNLQEIFHKMRTEGLTNNAV-------KMFDALS 98 (257)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~--~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-------~ll~~~~ 98 (257)
.+.......+..+.+...+.+.....|.. ..+.. ..+...|++++|.+.++.+.+.+..+... .+...+.
T Consensus 112 ~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 191 (389)
T PRK11788 112 ELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQAL 191 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence 33444444555555555544433333321 11111 56667777777777777776654332211 2344556
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhH
Q 043311 99 KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKIL 178 (257)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~ 178 (257)
+.|++++|..+|+++.+.. +.+...+..+...+.+.|++++|.++|+++.+.+......+++.+..+|...|+ +
T Consensus 192 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~-----~ 265 (389)
T PRK11788 192 ARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGD-----E 265 (389)
T ss_pred hCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCC-----H
Confidence 6777777777777776542 223456666777777777777777777777754322224566777777777433 7
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc---CCchhhHHhhh
Q 043311 179 GDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRG---QGFRGVINILF 255 (257)
Q Consensus 179 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~---~g~~~~~~~l~ 255 (257)
++|...++.+.+. .|+...+..+...+.+.|++++|..+++++.+. .|+..++..++..+.. .|....+..+|
T Consensus 266 ~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~ 341 (389)
T PRK11788 266 AEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLL 341 (389)
T ss_pred HHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHH
Confidence 7777777777654 456666677777777777777777777777654 5777777777665543 34555555444
Q ss_pred c
Q 043311 256 G 256 (257)
Q Consensus 256 ~ 256 (257)
+
T Consensus 342 ~ 342 (389)
T PRK11788 342 R 342 (389)
T ss_pred H
Confidence 3
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.48 E-value=9.3e-12 Score=105.63 Aligned_cols=186 Identities=11% Similarity=0.026 Sum_probs=133.8
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCc--HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcC
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNN--AVKMFDALSKDGLTHEALQLFAQIKDKGHMPD----VVAHTAVIEAYASAG 136 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~~ 136 (257)
..+.+.|+++.|..+|..+.+...... ...+...+.+.|++++|.+.|+.+.+.+..++ ...|..+...+.+.|
T Consensus 115 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 194 (389)
T PRK11788 115 QDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARG 194 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCC
Confidence 566777888888888888876422111 12467778888888888888888877543322 123556666777888
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 043311 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216 (257)
Q Consensus 137 ~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 216 (257)
++++|...|+++.+.. +.+...+..+...+.+. |++++|.++|+++...+-.....+++.+..+|.+.|++++|
T Consensus 195 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A 268 (389)
T PRK11788 195 DLDAARALLKKALAAD-PQCVRASILLGDLALAQ-----GDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEG 268 (389)
T ss_pred CHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHH
Confidence 8888888888887653 33456777777788884 44888888888887643222245678888888888999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 217 RGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 217 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
...++++.+. .|+...+..+...+...|+.+.|..+|+
T Consensus 269 ~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~ 306 (389)
T PRK11788 269 LEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLR 306 (389)
T ss_pred HHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9988888775 4666677788888888888888888775
No 11
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.43 E-value=1.5e-11 Score=100.54 Aligned_cols=180 Identities=15% Similarity=0.182 Sum_probs=141.7
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHH---HHHH--HHHhcCChHHH-HHHHHHHHhCC-------------------
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAV---KMFD--ALSKDGLTHEA-LQLFAQIKDKG------------------- 117 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~ll~--~~~~~~~~~~a-~~~~~~m~~~g------------------- 117 (257)
.-....|.+..+.-+|+.|++.|...+.. .|++ +|....++--+ ++-|-.|.+.|
T Consensus 123 ~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~ 202 (625)
T KOG4422|consen 123 LKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFET 202 (625)
T ss_pred HHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhh
Confidence 44567889999999999999988766643 2322 33333333222 22333343322
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCH
Q 043311 118 HMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA 197 (257)
Q Consensus 118 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 197 (257)
.+-+..+|.+||.++++--..+.|.+++++-.....+.+..+||.+|.+-. +....+++.+|....+.||.
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S---------~~~~K~Lv~EMisqkm~Pnl 273 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS---------YSVGKKLVAEMISQKMTPNL 273 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH---------hhccHHHHHHHHHhhcCCch
Confidence 123568999999999999999999999999998888999999999998654 34448899999999999999
Q ss_pred HHHHHHHHHHHHcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhH
Q 043311 198 GTYTAVFEAFVRAQKVDE----ARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVI 251 (257)
Q Consensus 198 ~~~~~li~~~~~~~~~~~----a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~ 251 (257)
.|||+++++.++.|+++. |.+++.+|.+-|+.|...+|..+|.-+.+.++..++
T Consensus 274 ~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~ 331 (625)
T KOG4422|consen 274 FTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKV 331 (625)
T ss_pred HhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhh
Confidence 999999999999998765 566889999999999999999999999988887654
No 12
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.35 E-value=1.4e-10 Score=107.75 Aligned_cols=185 Identities=16% Similarity=0.097 Sum_probs=129.2
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNA-VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEA 141 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 141 (257)
..+...|++++|.+.|+.+...+..+.. ..+..++.+.|++++|.+.++.+.+. .+.+...++.+...|.+.|++++|
T Consensus 711 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A 789 (899)
T TIGR02917 711 DLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKA 789 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHH
Confidence 4555666666666666666654333221 23566666677777777777666654 234566677777777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 043311 142 LRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221 (257)
Q Consensus 142 ~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 221 (257)
..+|+++.+.+ +.+..+++.+...+.. .|. ++|..+++...+.. +-+..++..+...+...|++++|..+|+
T Consensus 790 ~~~~~~~~~~~-p~~~~~~~~l~~~~~~-----~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 861 (899)
T TIGR02917 790 IKHYRTVVKKA-PDNAVVLNNLAWLYLE-----LKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLR 861 (899)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHh-----cCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 77777777653 4466777777777776 444 45777777665531 2244566777788889999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 222 QMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 222 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
++.+.+.. +..++..+..++...|..+.|..+|+|
T Consensus 862 ~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 896 (899)
T TIGR02917 862 KAVNIAPE-AAAIRYHLALALLATGRKAEARKELDK 896 (899)
T ss_pred HHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99987644 889999999999999999999998864
No 13
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.28 E-value=5.8e-10 Score=103.67 Aligned_cols=154 Identities=16% Similarity=0.070 Sum_probs=62.4
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCC-CcH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLT-NNA-VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~-p~~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 140 (257)
..+...|+++.|.++++.+.+.... +.. ..+..+|.+.|++++|.+.|+.+.+.. +.+...|..+..+|.+.|++++
T Consensus 575 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 653 (899)
T TIGR02917 575 QYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAK 653 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHH
Confidence 3344445555555555544432211 111 124444444455555555554444321 1233344444444444444444
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 043311 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220 (257)
Q Consensus 141 a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 220 (257)
|..+|+++.+.. +.+..++..+...+... |+++.|..+++.+.+.+ +.+...+..+...+.+.|++++|.+.|
T Consensus 654 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~ 726 (899)
T TIGR02917 654 AITSLKRALELK-PDNTEAQIGLAQLLLAA-----KRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAY 726 (899)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHH
Confidence 444444444321 22334444444444442 22444444444443321 122333333334444444444444444
Q ss_pred HHHH
Q 043311 221 QQMK 224 (257)
Q Consensus 221 ~~m~ 224 (257)
+++.
T Consensus 727 ~~~~ 730 (899)
T TIGR02917 727 RKAL 730 (899)
T ss_pred HHHH
Confidence 4433
No 14
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.28 E-value=2.4e-10 Score=93.66 Aligned_cols=159 Identities=19% Similarity=0.219 Sum_probs=128.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcc
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA 171 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~ 171 (257)
.+|.++||....+.|.+++++-.+...+.+..+||.+|.+-+-..+ .+++.+|.+..+.||..|||++++..++.|
T Consensus 212 ~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~c~akfg 287 (625)
T KOG4422|consen 212 IMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLSCAAKFG 287 (625)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHHHHHHhc
Confidence 4899999999999999999999999999999999999988655443 778999999999999999999999999966
Q ss_pred CCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHH----CCCCC----CHHHHHHHHHHh
Q 043311 172 DGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE-ARGLLQQMKA----KGFVP----DEKAVKEALIDK 242 (257)
Q Consensus 172 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~----~g~~p----~~~t~~~ll~~~ 242 (257)
+.+. ....+.+++.+|++-|++|...+|..+|.-+++.++..+ +..++.++.+ +.++| |..-|..-+..|
T Consensus 288 ~F~~-ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic 366 (625)
T KOG4422|consen 288 KFED-ARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSIC 366 (625)
T ss_pred chHH-HHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHH
Confidence 5111 134566788999999999999999999999999887643 4445555544 33443 455677778889
Q ss_pred hcCCchhhHHhhh
Q 043311 243 RGQGFRGVINILF 255 (257)
Q Consensus 243 ~~~g~~~~~~~l~ 255 (257)
.+..+.+.|+++.
T Consensus 367 ~~l~d~~LA~~v~ 379 (625)
T KOG4422|consen 367 SSLRDLELAYQVH 379 (625)
T ss_pred HHhhhHHHHHHHH
Confidence 9999999888764
No 15
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.14 E-value=2.1e-10 Score=101.13 Aligned_cols=164 Identities=21% Similarity=0.247 Sum_probs=112.0
Q ss_pred HHHHHHHhCCCCCcHH---HHHHHHHhcCChHHHHHHHHHHHhCC------------------------CCCCHHHHHHH
Q 043311 76 EIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKG------------------------HMPDVVAHTAV 128 (257)
Q Consensus 76 ~~~~~m~~~~~~p~~~---~ll~~~~~~~~~~~a~~~~~~m~~~g------------------------~~p~~~~~~~l 128 (257)
.+|..+...|+.|+.. .+|.-||..|+++.|- +|..|+-.. -.|...||+.|
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~L 89 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNL 89 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHH
Confidence 5667777777777765 3777777777777777 776665321 24778889999
Q ss_pred HHHHHhcCChHHHHHHHHH-HHH---------------------------------------------------------
Q 043311 129 IEAYASAGQGKEALRVFMR-MLA--------------------------------------------------------- 150 (257)
Q Consensus 129 i~~~~~~~~~~~a~~~~~~-m~~--------------------------------------------------------- 150 (257)
+.+|...||+.. ++.-++ |..
T Consensus 90 l~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvs 168 (1088)
T KOG4318|consen 90 LKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVS 168 (1088)
T ss_pred HHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence 999999988543 222221 211
Q ss_pred ----------------------------CCC-CCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHH
Q 043311 151 ----------------------------SGV-APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYT 201 (257)
Q Consensus 151 ----------------------------~g~-~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 201 (257)
.+. .|++.+|.++++.... +|.++.|..++.+|++.|++.+.+-|-
T Consensus 169 a~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~ala-----ag~~d~Ak~ll~emke~gfpir~HyFw 243 (1088)
T KOG4318|consen 169 AWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALA-----AGDVDGAKNLLYEMKEKGFPIRAHYFW 243 (1088)
T ss_pred cccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHh-----cCchhhHHHHHHHHHHcCCCcccccch
Confidence 111 2445555555554444 345788888888888888888877777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchh
Q 043311 202 AVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRG 249 (257)
Q Consensus 202 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 249 (257)
.||-+ .++...++.+++-|.+.||.|++.|+.--+..+.++|...
T Consensus 244 pLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~ 288 (1088)
T KOG4318|consen 244 PLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTK 288 (1088)
T ss_pred hhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhh
Confidence 77766 7777788888888888888888888888888887766533
No 16
>PF12854 PPR_1: PPR repeat
Probab=99.13 E-value=9.3e-11 Score=62.70 Aligned_cols=34 Identities=35% Similarity=0.695 Sum_probs=29.2
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043311 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224 (257)
Q Consensus 191 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 224 (257)
.|+.||..|||+||.+|++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4788899999999999999999999999988873
No 17
>PF12854 PPR_1: PPR repeat
Probab=99.10 E-value=1.3e-10 Score=62.14 Aligned_cols=34 Identities=38% Similarity=0.652 Sum_probs=28.1
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043311 116 KGHMPDVVAHTAVIEAYASAGQGKEALRVFMRML 149 (257)
Q Consensus 116 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 149 (257)
+|+.||..|||+||.+|++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3778888888888888888888888888888873
No 18
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.05 E-value=1.7e-07 Score=72.93 Aligned_cols=186 Identities=12% Similarity=0.036 Sum_probs=145.7
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCC-CcH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLT-NNA-VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~-p~~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 140 (257)
..+...|++++|.+.+++..+..-. +.. ..+...+...|++++|.+.|+...+.. +.+...+..+-..+...|++++
T Consensus 39 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~g~~~~ 117 (234)
T TIGR02521 39 LGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQGKYEQ 117 (234)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcccHHH
Confidence 6777899999999999998875311 111 136778889999999999999988763 2356678888889999999999
Q ss_pred HHHHHHHHHHCCC-CCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 043311 141 ALRVFMRMLASGV-APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGL 219 (257)
Q Consensus 141 a~~~~~~m~~~g~-~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~ 219 (257)
|...|++..+... ......+..+-..+... |+++.|...+++..... +.+...+..+...+...|++++|...
T Consensus 118 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 191 (234)
T TIGR02521 118 AMQQFEQAIEDPLYPQPARSLENAGLCALKA-----GDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAY 191 (234)
T ss_pred HHHHHHHHHhccccccchHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999986532 22345666677777774 44999999999987642 22456788888999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 220 LQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 220 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
+++.... ...+...+..+...+...|+.+.+..+++
T Consensus 192 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 227 (234)
T TIGR02521 192 LERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGA 227 (234)
T ss_pred HHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999877 34566777778888889999999887754
No 19
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.03 E-value=7.5e-09 Score=83.99 Aligned_cols=183 Identities=15% Similarity=0.122 Sum_probs=109.9
Q ss_pred cCCCCHHHHHHHHHHHHhCCCCCcHH-HHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHH
Q 043311 66 EEPTDPRNLQEIFHKMRTEGLTNNAV-KMFDALSKDGLTHEALQLFAQIKDKG-HMPDVVAHTAVIEAYASAGQGKEALR 143 (257)
Q Consensus 66 ~~~~~~~~a~~~~~~m~~~~~~p~~~-~ll~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~~~~~~a~~ 143 (257)
...+++++|.+++....+..-.|... .++..+.+.++++.+.++++...+.. ...+...|..+-..+.+.|+.++|..
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 68899999998887766544344433 47788899999999999999987543 34677889999999999999999999
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043311 144 VFMRMLASGVAP-NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222 (257)
Q Consensus 144 ~~~~m~~~g~~~-~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 222 (257)
.|++..+. .| |....+.++..+.. .|..+++.+++....... +.|...+..+-.+|...|+.++|...|++
T Consensus 168 ~~~~al~~--~P~~~~~~~~l~~~li~-----~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~ 239 (280)
T PF13429_consen 168 DYRKALEL--DPDDPDARNALAWLLID-----MGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEK 239 (280)
T ss_dssp HHHHHHHH---TT-HHHHHHHHHHHCT-----TCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHc--CCCCHHHHHHHHHHHHH-----CCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccc
Confidence 99999875 44 57788889998888 444888888888877642 45667788999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 223 MKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 223 m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
..... +-|......+..++...|..+.|..+..+
T Consensus 240 ~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 240 ALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHHS-TT-HHHHHHHHHHHT--------------
T ss_pred ccccc-ccccccccccccccccccccccccccccc
Confidence 88753 44888888999999999999999988653
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.01 E-value=1.1e-07 Score=85.96 Aligned_cols=151 Identities=16% Similarity=0.125 Sum_probs=75.2
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 043311 95 DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE----ALRVFMRMLASGVAPNAYTYAVLIKGLAAA 170 (257)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~----a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~ 170 (257)
.++.+.|++++|...|+...+.. +-+...+..+-..|...|++++ |...|++..+.. +.+...+..+-..+..
T Consensus 220 ~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~- 296 (656)
T PRK15174 220 DTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIR- 296 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH-
Confidence 34444555555555555544432 1233444444555555555543 455555554431 2234455555555555
Q ss_pred cCCcchhHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHhhcCCch
Q 043311 171 ADGNAKILGDAQKYLMEMVGKGMRPN-AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA-VKEALIDKRGQGFR 248 (257)
Q Consensus 171 ~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~ 248 (257)
.|++++|...++..... .|+ ...+..+...+.+.|++++|...|+++... .|+... +..+..++...|+.
T Consensus 297 ----~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~ 368 (656)
T PRK15174 297 ----TGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKT 368 (656)
T ss_pred ----CCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCH
Confidence 23366666666665543 232 334445556666666666666666666553 233222 22233455666666
Q ss_pred hhHHhhhc
Q 043311 249 GVINILFG 256 (257)
Q Consensus 249 ~~~~~l~~ 256 (257)
+.|...|+
T Consensus 369 deA~~~l~ 376 (656)
T PRK15174 369 SEAESVFE 376 (656)
T ss_pred HHHHHHHH
Confidence 66666554
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.96 E-value=3.2e-07 Score=83.00 Aligned_cols=118 Identities=11% Similarity=-0.007 Sum_probs=55.8
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 043311 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211 (257)
Q Consensus 132 ~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 211 (257)
+...|++++|..+++.+.+..-.++...+..+...+.. .|++++|...++...... +-+...+..+-..+...|
T Consensus 187 l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~-----~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G 260 (656)
T PRK15174 187 FLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCA-----VGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSG 260 (656)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHH-----CCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcC
Confidence 44445555555555444433212223333333344444 223555555555554431 123344445555555555
Q ss_pred CHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 212 KVDE----ARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 212 ~~~~----a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
++++ |...|++..... +-+...+..+-..+...|+.+.|..+++
T Consensus 261 ~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~ 308 (656)
T PRK15174 261 RSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQ 308 (656)
T ss_pred CchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5553 555555555432 2234455555555666666666655543
No 22
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.91 E-value=4.8e-07 Score=81.54 Aligned_cols=218 Identities=15% Similarity=0.043 Sum_probs=155.1
Q ss_pred hhhcccCCCCccchhhcccCCCCCCccccc-c--ccccCCCCHHHHHHHHHHHHhCCC-CCcHH-HHHHHHHhcCChHHH
Q 043311 32 QRSLSSSSDQPTKKYVNTKSKLPPPYDPFK-K--VVDEEPTDPRNLQEIFHKMRTEGL-TNNAV-KMFDALSKDGLTHEA 106 (257)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~--~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~-~ll~~~~~~~~~~~a 106 (257)
......+..+.+...+.+...+.|+..... . ..+...|++++|...|+...+..- .++.. .+-..+...|++++|
T Consensus 339 ~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 418 (615)
T TIGR00990 339 TFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQA 418 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 333445666666666666656666533222 2 667789999999999998877531 22222 466778889999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHH
Q 043311 107 LQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186 (257)
Q Consensus 107 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~ 186 (257)
...|+...+.. +.+...|..+-.++.+.|++++|...|++..+. .+-+...|+.+-..+...|+ +++|.+.|+
T Consensus 419 ~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~-----~~~A~~~~~ 491 (615)
T TIGR00990 419 GKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNK-----FDEAIEKFD 491 (615)
T ss_pred HHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccC-----HHHHHHHHH
Confidence 99999988752 234667778888899999999999999998865 24457888888888888444 999999999
Q ss_pred HHHhCCCC--C---CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 187 EMVGKGMR--P---NA-GTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 187 ~m~~~g~~--p---~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
......-. + +. ..++.....+...|++++|.+++++..... .-+...+..+...+...|+.+.|..+|++
T Consensus 492 ~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~ 567 (615)
T TIGR00990 492 TAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFER 567 (615)
T ss_pred HHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 87653211 1 11 122222333445699999999999987754 23445688888999999999999988864
No 23
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.86 E-value=4.6e-07 Score=77.26 Aligned_cols=78 Identities=8% Similarity=-0.050 Sum_probs=62.4
Q ss_pred hhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhh
Q 043311 176 KILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINIL 254 (257)
Q Consensus 176 ~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l 254 (257)
+..+++.+..+...+. .| |...+.++-..|.+.+++++|.+.|+...+. .|+..++..+-..+.+.|+.+++..+
T Consensus 308 ~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~ 383 (398)
T PRK10747 308 NNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAM 383 (398)
T ss_pred CChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3466666666666653 34 4455777888899999999999999999874 69999999999999999999999888
Q ss_pred hcC
Q 043311 255 FGK 257 (257)
Q Consensus 255 ~~k 257 (257)
+.+
T Consensus 384 ~~~ 386 (398)
T PRK10747 384 RRD 386 (398)
T ss_pred HHH
Confidence 753
No 24
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.81 E-value=2.7e-06 Score=76.78 Aligned_cols=179 Identities=11% Similarity=-0.038 Sum_probs=140.8
Q ss_pred CCCHHHHHHHHHHHHhCC-CCCcHH----HHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHH
Q 043311 68 PTDPRNLQEIFHKMRTEG-LTNNAV----KMFDALSKDGLTHEALQLFAQIKDKGHMPD-VVAHTAVIEAYASAGQGKEA 141 (257)
Q Consensus 68 ~~~~~~a~~~~~~m~~~~-~~p~~~----~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a 141 (257)
.+++++|.+.|+...+.+ ..|+.. .+-..+...|++++|...|+...+. .|+ ...|..+-..+...|++++|
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKA 384 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHH
Confidence 468899999999988865 344432 2455667889999999999998774 454 55788888889999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 043311 142 LRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQKVDEARGLL 220 (257)
Q Consensus 142 ~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~ 220 (257)
...|++..+.. +-+..+|..+-..+...|+ +++|...|+...+. .| +...+..+-..+.+.|++++|...|
T Consensus 385 ~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~-----~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~ 456 (615)
T TIGR00990 385 EEDFDKALKLN-SEDPDIYYHRAQLHFIKGE-----FAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATF 456 (615)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999988763 3457888888888888554 99999999988764 34 4566777788888999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 221 QQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 221 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
++..+.. +-+...+..+-..+...|+.+.|...|++
T Consensus 457 ~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 492 (615)
T TIGR00990 457 RRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDT 492 (615)
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9988642 33467788888889999999999888763
No 25
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.81 E-value=1.9e-08 Score=81.67 Aligned_cols=217 Identities=14% Similarity=0.096 Sum_probs=94.4
Q ss_pred hhhhhcccCCCCccchhhcc-cCCC-CCCcccccc---ccccCCCCHHHHHHHHHHHHhCCCC-CcHH-HHHHHHHhcCC
Q 043311 30 TLQRSLSSSSDQPTKKYVNT-KSKL-PPPYDPFKK---VVDEEPTDPRNLQEIFHKMRTEGLT-NNAV-KMFDALSKDGL 102 (257)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~-~~~~-~p~~~~~~~---~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~-~ll~~~~~~~~ 102 (257)
+.......+++..+.+.+.+ .... +|+...|-. ......++++.|.+.++.+...+.. |... .++.. ...++
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccc
Confidence 35555667777777777743 3344 355444433 6677899999999999999886533 3333 34444 78899
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhccCCcchhHHHH
Q 043311 103 THEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG-VAPNAYTYAVLIKGLAAAADGNAKILGDA 181 (257)
Q Consensus 103 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~t~~~ll~~~~~~~~~~~~~~~~a 181 (257)
+++|.+++...-+. .++...+..++..+...++++++.++++...... .+.+...|..+-..+.+ .|+.++|
T Consensus 93 ~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~-----~G~~~~A 165 (280)
T PF13429_consen 93 PEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQ-----LGDPDKA 165 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHH-----CCHHHHH
T ss_pred cccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH-----cCCHHHH
Confidence 99999998876554 3677788899999999999999999999987543 46688888888898999 5559999
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 182 QKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 182 ~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
.++++...+. .| |....+.++..+...|+.+++.++++...... ..|...+..+-.++...|+.+.|..+|+|
T Consensus 166 ~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~ 239 (280)
T PF13429_consen 166 LRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEK 239 (280)
T ss_dssp HHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccc
Confidence 9999998864 46 46778889999999999999999998887764 55666788888999999999999988864
No 26
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.80 E-value=8.9e-07 Score=68.90 Aligned_cols=192 Identities=14% Similarity=0.035 Sum_probs=140.7
Q ss_pred hhhhhhhcccCCCCccchhhcccCCCCCCcccccc---ccccCCCCHHHHHHHHHHHHhCCCCCc-H-HHHHHHHHhcCC
Q 043311 28 NATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKK---VVDEEPTDPRNLQEIFHKMRTEGLTNN-A-VKMFDALSKDGL 102 (257)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~---~~~~~~~~~~~a~~~~~~m~~~~~~p~-~-~~ll~~~~~~~~ 102 (257)
..+.......+....+...+.+.....|+...... ..+...|+++.|.+.++...+...... . ..+...+...|+
T Consensus 35 ~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~ 114 (234)
T TIGR02521 35 VQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGK 114 (234)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccc
Confidence 33444555566666666555443333444322212 777889999999999999887543222 1 246778889999
Q ss_pred hHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHH
Q 043311 103 THEALQLFAQIKDKGHM-PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDA 181 (257)
Q Consensus 103 ~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a 181 (257)
+++|.+.|....+.... .....+..+-..+...|++++|...|++..+.. +.+...+..+...+...|+ +++|
T Consensus 115 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~-----~~~A 188 (234)
T TIGR02521 115 YEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQ-----YKDA 188 (234)
T ss_pred HHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCC-----HHHH
Confidence 99999999999875322 234567778888999999999999999988763 3356778888888888555 9999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 043311 182 QKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK 226 (257)
Q Consensus 182 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 226 (257)
...+++.... .+.+...+..+...+...|+.+.|..+.+.+...
T Consensus 189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999998875 3445667778888889999999999998887653
No 27
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.74 E-value=5e-06 Score=77.91 Aligned_cols=180 Identities=14% Similarity=0.093 Sum_probs=103.3
Q ss_pred cCCCCHHHHHHHHHHHHhCCCCCc-HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 043311 66 EEPTDPRNLQEIFHKMRTEGLTNN-AVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRV 144 (257)
Q Consensus 66 ~~~~~~~~a~~~~~~m~~~~~~p~-~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~ 144 (257)
.+.|++++|...|+.+......+. ...+..++.+.|+.++|...|+...+.. ..+...+..+...+...|++++|...
T Consensus 520 ~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~ 598 (987)
T PRK09782 520 YQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALND 598 (987)
T ss_pred HHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHH
Confidence 456666666666666544322111 1123445566666666666666665542 11222222222233344677777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043311 145 FMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN-AGTYTAVFEAFVRAQKVDEARGLLQQM 223 (257)
Q Consensus 145 ~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m 223 (257)
|++..+. .|+...|..+-..+.+. |+.++|...|+..... .|+ ...++.+-..+...|++++|...+++.
T Consensus 599 ~~~AL~l--~P~~~a~~~LA~~l~~l-----G~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~A 669 (987)
T PRK09782 599 LTRSLNI--APSANAYVARATIYRQR-----HNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERA 669 (987)
T ss_pred HHHHHHh--CCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 7666653 45566666666666663 3377777777776653 343 344555555667777777777777777
Q ss_pred HHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 224 KAKGFVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 224 ~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
.+.. +-+...+..+-.++...|+.+.|+..|+
T Consensus 670 L~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~ 701 (987)
T PRK09782 670 HKGL-PDDPALIRQLAYVNQRLDDMAATQHYAR 701 (987)
T ss_pred HHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 6642 2245566666667777777777776665
No 28
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.74 E-value=2.5e-06 Score=73.03 Aligned_cols=217 Identities=12% Similarity=0.018 Sum_probs=138.6
Q ss_pred cccCCCCccchhhcccCCCCCCcccccc---ccccCCCCHHHHHHHHHHHHhCCCCCcH-H--HHHHHHHhcCChHHHHH
Q 043311 35 LSSSSDQPTKKYVNTKSKLPPPYDPFKK---VVDEEPTDPRNLQEIFHKMRTEGLTNNA-V--KMFDALSKDGLTHEALQ 108 (257)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~---~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~--~ll~~~~~~~~~~~a~~ 108 (257)
...+++..+.+...+.....|+...+.+ .+..+.|+++.+.+.+....+..-.+.. . +....+...|+++.|..
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 4456666666665555555554333222 5566778888888888887664322221 1 24666677888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH-------H---------------------
Q 043311 109 LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYT-------Y--------------------- 160 (257)
Q Consensus 109 ~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t-------~--------------------- 160 (257)
.++.+.+.. +-+...+..+...+...|++++|.+++..+.+.++.+.... +
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888887763 22456777888888888888888888888887754322211 1
Q ss_pred -------------HHHHHHHHhccCCcchhHHHHHHHHHHHHhCC----------------------------------C
Q 043311 161 -------------AVLIKGLAAAADGNAKILGDAQKYLMEMVGKG----------------------------------M 193 (257)
Q Consensus 161 -------------~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g----------------------------------~ 193 (257)
..+...+.. .|..+.|.+++++..+.. .
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~-----~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLID-----CDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHH-----CCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 111111222 233444444444433210 1
Q ss_pred CCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 194 RPNAG---TYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 194 ~p~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
.|+.. ...++-..+.+.|++++|.+.|+........|+..++..+-..+...|+.+.|.++|+|
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33333 34466677888899999999999655555678998899999999999999999988864
No 29
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.72 E-value=2.6e-08 Score=53.59 Aligned_cols=34 Identities=32% Similarity=0.629 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 043311 198 GTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231 (257)
Q Consensus 198 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 231 (257)
.+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3799999999999999999999999999999987
No 30
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.72 E-value=2.3e-08 Score=53.53 Aligned_cols=33 Identities=36% Similarity=0.518 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 043311 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155 (257)
Q Consensus 123 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~ 155 (257)
.+||++|.+|++.|+++.|+++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
No 31
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.71 E-value=6.1e-07 Score=60.65 Aligned_cols=86 Identities=14% Similarity=0.274 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhccCCc---chhHHHHHHHHHHHHhCCCCCCHHH
Q 043311 124 AHTAVIEAYASAGQGKEALRVFMRMLASGV-APNAYTYAVLIKGLAAAADGN---AKILGDAQKYLMEMVGKGMRPNAGT 199 (257)
Q Consensus 124 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~t~~~ll~~~~~~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~ 199 (257)
|-...|.-|...+++.....+|+.+++.|+ .|+..+|+.++++.++..-.+ .+.+-..+.++++|...+++|+..|
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 334556666667888888888888888887 778888888888776543211 1235566677777777777888888
Q ss_pred HHHHHHHHHH
Q 043311 200 YTAVFEAFVR 209 (257)
Q Consensus 200 ~~~li~~~~~ 209 (257)
|+.++....+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 8777776654
No 32
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.71 E-value=2.7e-08 Score=53.47 Aligned_cols=34 Identities=35% Similarity=0.654 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 043311 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156 (257)
Q Consensus 123 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~ 156 (257)
.+||++|.+|++.|++++|.++|++|.+.|++||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3688888888888888888888888888888887
No 33
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.69 E-value=3.6e-08 Score=52.71 Aligned_cols=33 Identities=36% Similarity=0.552 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 043311 198 GTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230 (257)
Q Consensus 198 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 230 (257)
.|||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888887
No 34
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.69 E-value=2e-06 Score=68.73 Aligned_cols=212 Identities=12% Similarity=0.030 Sum_probs=137.9
Q ss_pred cccCCCCccchhhcccCCCCCCcccccc---ccccCCCCHHHHHHHHHHHHhCCCCCcHH------HHHHHHHhcCChHH
Q 043311 35 LSSSSDQPTKKYVNTKSKLPPPYDPFKK---VVDEEPTDPRNLQEIFHKMRTEGLTNNAV------KMFDALSKDGLTHE 105 (257)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~---~~~~~~~~~~~a~~~~~~m~~~~~~p~~~------~ll~~~~~~~~~~~ 105 (257)
+-+..++++-..+.......|....... ..+.+.|..+.|+++...+.++.-.+... .|-.-|.+.|-++.
T Consensus 46 LLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred HhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 4466777777776665556665444444 88999999999999999999865544433 36778889999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhccCCcchhHHHH
Q 043311 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA----YTYAVLIKGLAAAADGNAKILGDA 181 (257)
Q Consensus 106 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~----~t~~~ll~~~~~~~~~~~~~~~~a 181 (257)
|+.+|..+.+.|. --...-.-|+..|-...+|++|.++-+++.+.|-.+.. ..|.-+-..+.. ...++.|
T Consensus 126 AE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~-----~~~~d~A 199 (389)
T COG2956 126 AEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA-----SSDVDRA 199 (389)
T ss_pred HHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh-----hhhHHHH
Confidence 9999999987532 23456777899999999999999999999876544322 122222222222 2235666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhh
Q 043311 182 QKYLMEMVGKGMRPNAGTYTAVF-EAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINIL 254 (257)
Q Consensus 182 ~~~~~~m~~~g~~p~~~~~~~li-~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l 254 (257)
..++..-.+. .|+.+--++++ +.+...|++..|.+.++...+.+..--+.+...|..+|...|..+.....
T Consensus 200 ~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~f 271 (389)
T COG2956 200 RELLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNF 271 (389)
T ss_pred HHHHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 6666655543 23322222222 44556666666666666666665544555666666666666666555443
No 35
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.67 E-value=8.5e-06 Score=74.97 Aligned_cols=221 Identities=10% Similarity=-0.016 Sum_probs=140.6
Q ss_pred hhhhcccCCCCccchhhcccCCCCCCcccccc-----ccccCCCCHHHHHHHHHHHHhCCCC-CcHH-HHHHHHHhcCCh
Q 043311 31 LQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKK-----VVDEEPTDPRNLQEIFHKMRTEGLT-NNAV-KMFDALSKDGLT 103 (257)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-----~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~-~ll~~~~~~~~~ 103 (257)
+......+....+..++.+.- .|....+.. ..+...|+++.|.++|+.+.+..-. |+.. .+...+...++.
T Consensus 75 l~l~~~~G~~~~A~~~~eka~--~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~ 152 (822)
T PRK14574 75 LQIAGWAGRDQEVIDVYERYQ--SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRG 152 (822)
T ss_pred HHHHHHcCCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCH
Confidence 333334466666666655554 332222222 3667779999999999988875322 3322 356777888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC-----------
Q 043311 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD----------- 172 (257)
Q Consensus 104 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~----------- 172 (257)
++|++.++.+.+. .|+...+-.+...+...++..+|++.++++.+.+ +-+...+..++.+..+.|-
T Consensus 153 ~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~ 229 (822)
T PRK14574 153 GVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKEN 229 (822)
T ss_pred HHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhC
Confidence 9999988888775 4666666445444444556656899999988763 3356666666666666665
Q ss_pred -------------------------------------------------------------------------CcchhHH
Q 043311 173 -------------------------------------------------------------------------GNAKILG 179 (257)
Q Consensus 173 -------------------------------------------------------------------------~~~~~~~ 179 (257)
...+++.
T Consensus 230 p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~ 309 (822)
T PRK14574 230 PNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTA 309 (822)
T ss_pred ccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHH
Confidence 0114566
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHhhcCCchhhHHhh
Q 043311 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG-----FVPDEKAVKEALIDKRGQGFRGVINIL 254 (257)
Q Consensus 180 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-----~~p~~~t~~~ll~~~~~~g~~~~~~~l 254 (257)
++.+.|+.|...|.+....+-.++.++|...++.++|..+|+.+.... ..++......|..++...+.+++|..+
T Consensus 310 ~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~ 389 (822)
T PRK14574 310 DLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQF 389 (822)
T ss_pred HHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHH
Confidence 666666666666655455566677777777777777777777775432 122333356677777777777777776
Q ss_pred hc
Q 043311 255 FG 256 (257)
Q Consensus 255 ~~ 256 (257)
.+
T Consensus 390 l~ 391 (822)
T PRK14574 390 AV 391 (822)
T ss_pred HH
Confidence 65
No 36
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.65 E-value=1.1e-05 Score=74.60 Aligned_cols=184 Identities=11% Similarity=0.014 Sum_probs=140.7
Q ss_pred ccCCCCHHHHHHHHHHHHhCCC-CCcHH--HHHHHHHhcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCh
Q 043311 65 DEEPTDPRNLQEIFHKMRTEGL-TNNAV--KMFDALSKDGLTHEALQLFAQIKDKGHMP---DVVAHTAVIEAYASAGQG 138 (257)
Q Consensus 65 ~~~~~~~~~a~~~~~~m~~~~~-~p~~~--~ll~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~li~~~~~~~~~ 138 (257)
+...|++++|...|+.+.+.+- .|+.. .+-..|...|++++|..+|+...+..... ....+..+..++...|++
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 4567999999999999998763 35532 26678999999999999999987643211 134566777788999999
Q ss_pred HHHHHHHHHHHHCC-----------CCCC---HHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043311 139 KEALRVFMRMLASG-----------VAPN---AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVF 204 (257)
Q Consensus 139 ~~a~~~~~~m~~~g-----------~~~~---~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 204 (257)
++|..+++.+.+.. -.|+ ...+..+...+.. .|+.++|.++++++... .+-+...+..+.
T Consensus 327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~-----~g~~~eA~~~l~~al~~-~P~n~~l~~~lA 400 (765)
T PRK10049 327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKY-----SNDLPQAEMRARELAYN-APGNQGLRIDYA 400 (765)
T ss_pred HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHh-CCCCHHHHHHHH
Confidence 99999999998652 1123 1244556667777 44499999999998764 244567888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 205 EAFVRAQKVDEARGLLQQMKAKGFVPD-EKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 205 ~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
..+...|++++|++.+++..... |+ ...+......+...|+.+.|+.+++
T Consensus 401 ~l~~~~g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~~~~A~~~~~ 451 (765)
T PRK10049 401 SVLQARGWPRAAENELKKAEVLE--PRNINLEVEQAWTALDLQEWRQMDVLTD 451 (765)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 99999999999999999988753 55 5666666678899999999998875
No 37
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.57 E-value=1.1e-06 Score=59.49 Aligned_cols=77 Identities=19% Similarity=0.311 Sum_probs=68.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGH-MPDVVAHTAVIEAYASAG--------QGKEALRVFMRMLASGVAPNAYTYAVL 163 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~~--------~~~~a~~~~~~m~~~g~~~~~~t~~~l 163 (257)
-|..|...+++.....+|+.++++|+ .|++.+|+.++.+.++.. .+-..+.+|++|...+++|+..||+++
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 56677777999999999999999999 999999999999988753 356788999999999999999999999
Q ss_pred HHHHHh
Q 043311 164 IKGLAA 169 (257)
Q Consensus 164 l~~~~~ 169 (257)
+..+.+
T Consensus 111 l~~Llk 116 (120)
T PF08579_consen 111 LGSLLK 116 (120)
T ss_pred HHHHHH
Confidence 998865
No 38
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.55 E-value=7.1e-06 Score=79.12 Aligned_cols=215 Identities=14% Similarity=0.093 Sum_probs=143.4
Q ss_pred hhhhhcccCCCCccchhhcccCCCCCCcccc--cc-ccccCCCCHHHHHHHHHHHHhCC-CCCcHH-H------------
Q 043311 30 TLQRSLSSSSDQPTKKYVNTKSKLPPPYDPF--KK-VVDEEPTDPRNLQEIFHKMRTEG-LTNNAV-K------------ 92 (257)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~-~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~-~------------ 92 (257)
........+....+...+.+...+.|+.... .+ ..+.+.|++++|...++...+.. -.|... .
T Consensus 467 ~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~ 546 (1157)
T PRK11447 467 QAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDR 546 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHH
Confidence 3344445566666655555554555553322 22 56677777777777777766532 122111 1
Q ss_pred --------------------------------HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 043311 93 --------------------------------MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140 (257)
Q Consensus 93 --------------------------------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 140 (257)
+...+...|+.++|.++++. .+.+...+..+-..+.+.|++++
T Consensus 547 ~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~ 621 (1157)
T PRK11447 547 AALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAA 621 (1157)
T ss_pred HHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHH
Confidence 12334455555555555541 23455667778888899999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 043311 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQKVDEARGL 219 (257)
Q Consensus 141 a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~ 219 (257)
|...|++..+.. +.+...+..+...+...|+ +++|.+.++...+. .| +...+..+-..+...|++++|.++
T Consensus 622 A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~-----~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~ 693 (1157)
T PRK11447 622 ARAAYQRVLTRE-PGNADARLGLIEVDIAQGD-----LAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRT 693 (1157)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCC-----HHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHH
Confidence 999999988763 4467888999999999444 99999999987653 34 345566677788899999999999
Q ss_pred HHHHHHCCC--CC---CHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 220 LQQMKAKGF--VP---DEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 220 ~~~m~~~g~--~p---~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
++++....- .| +...+..+-..+...|+.+.|..+|++
T Consensus 694 ~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~ 736 (1157)
T PRK11447 694 FNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKD 736 (1157)
T ss_pred HHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999987532 22 234555566778899999999988753
No 39
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.53 E-value=3e-05 Score=71.44 Aligned_cols=187 Identities=13% Similarity=0.075 Sum_probs=148.4
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCC-CCcHH--HHHHHHHhcCChHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHh
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGL-TNNAV--KMFDALSKDGLTHEALQLFAQIKDKG-----HMPDVVAHTAVIEAYAS 134 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~--~ll~~~~~~~~~~~a~~~~~~m~~~g-----~~p~~~~~~~li~~~~~ 134 (257)
.++...|+...|.+-|+.+...+. .|+.. .+-++|...+.+++|..+|....+.. ..++......|..+|..
T Consensus 300 ~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld 379 (822)
T PRK14574 300 GALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNE 379 (822)
T ss_pred HHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHh
Confidence 778899999999999999999885 57765 59999999999999999999986643 23455557889999999
Q ss_pred cCChHHHHHHHHHHHHCCC-------------CCCHH-HHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHH
Q 043311 135 AGQGKEALRVFMRMLASGV-------------APNAY-TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTY 200 (257)
Q Consensus 135 ~~~~~~a~~~~~~m~~~g~-------------~~~~~-t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 200 (257)
.+++++|..+++++.+.-- -||-. -+..++..+...|+ +++|++.++++... -+-|....
T Consensus 380 ~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gd-----l~~Ae~~le~l~~~-aP~n~~l~ 453 (822)
T PRK14574 380 SEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALND-----LPTAQKKLEDLSST-APANQNLR 453 (822)
T ss_pred cccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHh-CCCCHHHH
Confidence 9999999999999997311 11222 23345666777444 99999999999764 34478889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 201 TAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 201 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
..+-+.+...|.+..|+..++..... -+-+..+......++...|++..++.+.+
T Consensus 454 ~~~A~v~~~Rg~p~~A~~~~k~a~~l-~P~~~~~~~~~~~~al~l~e~~~A~~~~~ 508 (822)
T PRK14574 454 IALASIYLARDLPRKAEQELKAVESL-APRSLILERAQAETAMALQEWHQMELLTD 508 (822)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhh-CCccHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 99999999999999999999776655 23355667777788889999999987764
No 40
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.51 E-value=1.6e-06 Score=65.75 Aligned_cols=104 Identities=16% Similarity=0.242 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCC
Q 043311 120 PDVVAHTAVIEAYASA-----GQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194 (257)
Q Consensus 120 p~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~ 194 (257)
-|-.+|..+|+.|.+. |..+=...-+..|.+.|+.-|..+|+.||+.+=+ |... -..+|+.+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv------p~n~fQ~~------ 111 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV------PRNFFQAE------ 111 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc------cccHHHHH------
Confidence 3555666666665543 4455555556666666666666666666665544 1100 00001110
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCc
Q 043311 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGF 247 (257)
Q Consensus 195 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 247 (257)
...|- .+-+.|++++++|++.|+.||..|+..|+..+.+.+.
T Consensus 112 ---------F~hyp--~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 ---------FMHYP--RQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ---------hccCc--HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 00000 1235666666666666666666666666666665554
No 41
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.51 E-value=5e-05 Score=71.38 Aligned_cols=178 Identities=13% Similarity=-0.005 Sum_probs=134.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCcHH-H--HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 043311 67 EPTDPRNLQEIFHKMRTEGLTNNAV-K--MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALR 143 (257)
Q Consensus 67 ~~~~~~~a~~~~~~m~~~~~~p~~~-~--ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 143 (257)
..+++++|...|....... |+.. . +...+.+.|++++|...|+.+... .|+...+..+-.++.+.|+.++|..
T Consensus 488 ~~~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~ 563 (987)
T PRK09782 488 RDTLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDR 563 (987)
T ss_pred HhCCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHH
Confidence 3488888999877777643 4433 2 344556899999999999987654 4555567777788899999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043311 144 VFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223 (257)
Q Consensus 144 ~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 223 (257)
.|++..+.+ +.+...+..+...... .|++++|...++...+. .|+...|..+-..+.+.|++++|...|++.
T Consensus 564 ~l~qAL~l~-P~~~~l~~~La~~l~~-----~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~A 635 (987)
T PRK09782 564 WLQQAEQRG-LGDNALYWWLHAQRYI-----PGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAA 635 (987)
T ss_pred HHHHHHhcC-CccHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999998764 2233333333334434 34599999999998764 578888999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 224 KAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 224 ~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
.... +-+...+..+-.++...|+.+.|..+|++
T Consensus 636 L~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~ 668 (987)
T PRK09782 636 LELE-PNNSNYQAALGYALWDSGDIAQSREMLER 668 (987)
T ss_pred HHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 8864 33556666676789999999999888753
No 42
>PRK12370 invasion protein regulator; Provisional
Probab=98.50 E-value=5e-05 Score=67.64 Aligned_cols=170 Identities=14% Similarity=-0.075 Sum_probs=118.5
Q ss_pred CCCCHHHHHHHHHHHHhCCCC-CcHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHH
Q 043311 67 EPTDPRNLQEIFHKMRTEGLT-NNAV-KMFDALSKDGLTHEALQLFAQIKDKGHMPD-VVAHTAVIEAYASAGQGKEALR 143 (257)
Q Consensus 67 ~~~~~~~a~~~~~~m~~~~~~-p~~~-~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~ 143 (257)
..+++++|...+++..+.+-. +... .+-..+...|++++|...|++..+.. |+ ...|..+-.+|...|++++|..
T Consensus 316 ~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~ 393 (553)
T PRK12370 316 KQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQ 393 (553)
T ss_pred cchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 456689999999988885322 2222 24456678899999999999988853 54 5678888888999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043311 144 VFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN-AGTYTAVFEAFVRAQKVDEARGLLQQ 222 (257)
Q Consensus 144 ~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~ 222 (257)
.+++..+.+-. +...+..+...+.. .|++++|...+++..... .|+ ...+..+-..+...|+.++|...+.+
T Consensus 394 ~~~~Al~l~P~-~~~~~~~~~~~~~~-----~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~ 466 (553)
T PRK12370 394 TINECLKLDPT-RAAAGITKLWITYY-----HTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKE 466 (553)
T ss_pred HHHHHHhcCCC-ChhhHHHHHHHHHh-----ccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999876322 22233334444555 344899999998876542 343 34466677778899999999999998
Q ss_pred HHHCCCCCCHHHHHHHH-HHhhcCCc
Q 043311 223 MKAKGFVPDEKAVKEAL-IDKRGQGF 247 (257)
Q Consensus 223 m~~~g~~p~~~t~~~ll-~~~~~~g~ 247 (257)
+... .|+..+....+ ..+...|+
T Consensus 467 ~~~~--~~~~~~~~~~l~~~~~~~g~ 490 (553)
T PRK12370 467 ISTQ--EITGLIAVNLLYAEYCQNSE 490 (553)
T ss_pred hhhc--cchhHHHHHHHHHHHhccHH
Confidence 7554 44544444444 45566664
No 43
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.50 E-value=3.9e-06 Score=72.55 Aligned_cols=190 Identities=12% Similarity=0.053 Sum_probs=91.9
Q ss_pred cccchhhhhhhhcccCCCCccchhhcccCCCCCCcccccc---ccccCCCCHHHHHHHHHHHHhCCCCCcHH----HHHH
Q 043311 23 TNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKK---VVDEEPTDPRNLQEIFHKMRTEGLTNNAV----KMFD 95 (257)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~---~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~ll~ 95 (257)
+...++.+--.+..++.....-..+.+.-.+.|+...--+ ..+...+.+++|...|.+... ..|+.. .+-.
T Consensus 217 fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~--lrpn~A~a~gNla~ 294 (966)
T KOG4626|consen 217 FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN--LRPNHAVAHGNLAC 294 (966)
T ss_pred eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh--cCCcchhhccceEE
Confidence 3334444444444445444444445555555555332211 455555555665555555444 234432 1334
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCc
Q 043311 96 ALSKDGLTHEALQLFAQIKDKGHMPD-VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174 (257)
Q Consensus 96 ~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~ 174 (257)
.|...|.++.|+..|++..+. +|+ ...|+.|-.++-..|++.+|.+.|..-.... .--....+.|-..+..
T Consensus 295 iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E----- 366 (966)
T KOG4626|consen 295 IYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYRE----- 366 (966)
T ss_pred EEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHH-----
Confidence 455566666666666655542 343 3456666666666666666666665555431 1123344455555554
Q ss_pred chhHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043311 175 AKILGDAQKYLMEMVGKGMRPNA-GTYTAVFEAFVRAQKVDEARGLLQQMK 224 (257)
Q Consensus 175 ~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~ 224 (257)
.|.++.|..+|....+ +.|.. ..+|.|-..|-..|++++|...|++..
T Consensus 367 ~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal 415 (966)
T KOG4626|consen 367 QGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL 415 (966)
T ss_pred hccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH
Confidence 3335555555444332 22332 234444444444555555555554443
No 44
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.50 E-value=2.6e-05 Score=63.97 Aligned_cols=57 Identities=9% Similarity=-0.067 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 198 GTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 198 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
-.+.+|=.-|.+.+.|.+|...|+...+ .+|+..+|+.+-.++...|+.+.++.+++
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~ 385 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRR 385 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHH
Confidence 5667778889999999999999996655 57999999999999999999999998764
No 45
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.45 E-value=1.6e-05 Score=76.75 Aligned_cols=186 Identities=12% Similarity=0.052 Sum_probs=123.1
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCC-CcH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLT-NNA-VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~-p~~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 140 (257)
..+...|++++|.+.|++..+..-. |.. ..+...|.+.|++++|...|+...+... -+...+..+-..+...++.++
T Consensus 469 ~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~ 547 (1157)
T PRK11447 469 EALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRA 547 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHH
Confidence 6677899999999999999885322 221 2478889999999999999999876421 133333333333445555555
Q ss_pred HHHHHHHHHHCC---------------------------------------CCCCHHHHHHHHHHHHhccCCcchhHHHH
Q 043311 141 ALRVFMRMLASG---------------------------------------VAPNAYTYAVLIKGLAAAADGNAKILGDA 181 (257)
Q Consensus 141 a~~~~~~m~~~g---------------------------------------~~~~~~t~~~ll~~~~~~~~~~~~~~~~a 181 (257)
|...++.+.... .+.+...+..+-..+.+. |+.++|
T Consensus 548 Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~-----g~~~~A 622 (1157)
T PRK11447 548 ALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQR-----GDYAAA 622 (1157)
T ss_pred HHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHc-----CCHHHH
Confidence 555554432111 133444555566666663 448888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 182 QKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP-DEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 182 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
.+.|+...+.. +-+...+..+...+...|++++|.+.++..... .| +..+...+-.++...|+.+.|.++|++
T Consensus 623 ~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 696 (1157)
T PRK11447 623 RAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNR 696 (1157)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 88888877642 235667888888888888888888888877653 33 344555566677788888888887753
No 46
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.45 E-value=3.9e-06 Score=70.96 Aligned_cols=122 Identities=11% Similarity=0.073 Sum_probs=67.6
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCC
Q 043311 119 MPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS--GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196 (257)
Q Consensus 119 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 196 (257)
..+......+++.+....+++.+..++.+.... ....-..|..++|+.|.+.|. .+.+..++..=...|+=||
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~-----~~~~l~~L~n~~~yGiF~D 137 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGA-----EDELLELLKNRLQYGIFPD 137 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCC-----HHHHHHHHhChhhcccCCC
Confidence 334455555555555555566666666555543 222223344466666666333 5566666555555666666
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcC
Q 043311 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245 (257)
Q Consensus 197 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 245 (257)
..|||.||+.+.+.|++..|.++..+|...+.-.+..|+.--+.+|.+-
T Consensus 138 ~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 138 NFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 6666666666666666666666666666555555555555555555443
No 47
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.44 E-value=9.6e-05 Score=63.14 Aligned_cols=210 Identities=11% Similarity=0.084 Sum_probs=142.2
Q ss_pred cccCCCCccchhhcccCCCCCC-cccccc--ccccCCCCHHHHHHHHHHHHhCCCCCcHH---HHHHHHHhcCChHHHHH
Q 043311 35 LSSSSDQPTKKYVNTKSKLPPP-YDPFKK--VVDEEPTDPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQ 108 (257)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~p~-~~~~~~--~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~ll~~~~~~~~~~~a~~ 108 (257)
...+++..+.+...+.....+. ...+.. ....+.|+++.+.+.+.++.+..-.+... .....+...|+++.|..
T Consensus 95 ~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 95 LAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred HhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 3356777766665554333211 122222 55588999999999999998754333322 23567888999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhccCCcchhHHHH
Q 043311 109 LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA-------YTYAVLIKGLAAAADGNAKILGDA 181 (257)
Q Consensus 109 ~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~-------~t~~~ll~~~~~~~~~~~~~~~~a 181 (257)
.++.+.+.. +-+......+...|.+.|++++|.+++..+.+.+..++. .+|..++....... ..+..
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~-----~~~~l 248 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQ-----GSEGL 248 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc-----CHHHH
Confidence 999998864 335678899999999999999999999999988655333 13333444433422 24566
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhh
Q 043311 182 QKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILF 255 (257)
Q Consensus 182 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~ 255 (257)
.++++.+... .+.+......+...+...|+.++|.+++++..+. .||... .++.+....++.+.+.+..
T Consensus 249 ~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~ 317 (398)
T PRK10747 249 KRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVL 317 (398)
T ss_pred HHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHH
Confidence 6666665432 3457778889999999999999999999998874 555522 2334444557766665544
No 48
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.43 E-value=2.7e-07 Score=48.05 Aligned_cols=31 Identities=39% Similarity=0.567 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 043311 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGV 153 (257)
Q Consensus 123 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 153 (257)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888887764
No 49
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.43 E-value=2.8e-07 Score=48.00 Aligned_cols=31 Identities=19% Similarity=0.530 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 043311 198 GTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228 (257)
Q Consensus 198 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 228 (257)
+|||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3788888888888888888888888888775
No 50
>PRK12370 invasion protein regulator; Provisional
Probab=98.42 E-value=9.2e-05 Score=66.00 Aligned_cols=176 Identities=10% Similarity=-0.017 Sum_probs=127.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCcHH----HHHHHHH---------hcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 043311 69 TDPRNLQEIFHKMRTEGLTNNAV----KMFDALS---------KDGLTHEALQLFAQIKDKGHMP-DVVAHTAVIEAYAS 134 (257)
Q Consensus 69 ~~~~~a~~~~~~m~~~~~~p~~~----~ll~~~~---------~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~ 134 (257)
+++++|..+|++..+. .|+.. .+-.++. ..+++++|...++...+. .| +...|..+-..+..
T Consensus 275 ~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l--dP~~~~a~~~lg~~~~~ 350 (553)
T PRK12370 275 YSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL--DHNNPQALGLLGLINTI 350 (553)
T ss_pred HHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHH
Confidence 4567889999888874 34432 1222222 234578999999988875 34 56677777778889
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCH
Q 043311 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAG-TYTAVFEAFVRAQKV 213 (257)
Q Consensus 135 ~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~~~~ 213 (257)
.|++++|...|++..+.+ +.+...|..+-..+.. .|++++|...++...+. .|+.. .+..+...+...|++
T Consensus 351 ~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~-----~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~ 422 (553)
T PRK12370 351 HSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFM-----AGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGI 422 (553)
T ss_pred ccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCH
Confidence 999999999999998864 3356778888888888 45599999999998864 45432 333445557778999
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 214 DEARGLLQQMKAKGFVPD-EKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 214 ~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
++|...+++..... .|+ ...+..+-..+...|+.+.|...+.+
T Consensus 423 eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~ 466 (553)
T PRK12370 423 DDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKE 466 (553)
T ss_pred HHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999987654 343 44456666677889999999988753
No 51
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.42 E-value=7.1e-05 Score=69.25 Aligned_cols=169 Identities=13% Similarity=0.035 Sum_probs=129.9
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCC------cHHHHHHHHHhcCChHHHHHHHHHHHhCC-----------CCCC---H
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTN------NAVKMFDALSKDGLTHEALQLFAQIKDKG-----------HMPD---V 122 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p------~~~~ll~~~~~~~~~~~a~~~~~~m~~~g-----------~~p~---~ 122 (257)
..+...|++++|...|+.+.+..-.. ....+..++...|++++|..+++.+.+.. -.|+ .
T Consensus 280 ~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~ 359 (765)
T PRK10049 280 SAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWL 359 (765)
T ss_pred HHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHH
Confidence 78889999999999999987643211 12246778899999999999999998752 1233 2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCC-HHHHH
Q 043311 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN-AGTYT 201 (257)
Q Consensus 123 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~ 201 (257)
..+..+...+...|+.++|.++++++... .+-+...+..+...+...|+ .++|.+.++..... .|+ ...+-
T Consensus 360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~g~-----~~~A~~~l~~al~l--~Pd~~~l~~ 431 (765)
T PRK10049 360 QGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQARGW-----PRAAENELKKAEVL--EPRNINLEV 431 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHhh--CCCChHHHH
Confidence 35567778889999999999999999876 35567888888888888444 99999999988864 465 55666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043311 202 AVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241 (257)
Q Consensus 202 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 241 (257)
.....+.+.|++++|+.+++++... .|+....-.+=..
T Consensus 432 ~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~~~~ 469 (765)
T PRK10049 432 EQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQRLARA 469 (765)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 6777889999999999999999984 4555544444333
No 52
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.41 E-value=9.4e-05 Score=63.43 Aligned_cols=186 Identities=8% Similarity=-0.050 Sum_probs=124.4
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHHHH--HHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCh
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAVKM--FDALSKDGLTHEALQLFAQIKDKGHMPDV--VAHTAVIEAYASAGQG 138 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~l--l~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~li~~~~~~~~~ 138 (257)
......|+++.|.+.+....+..-.|-..-+ -.+..+.|+.+.|.+.+.+..+.. |+. ..--..-..+...|++
T Consensus 92 lla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~ 169 (409)
T TIGR00540 92 LLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNEL 169 (409)
T ss_pred HHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCH
Confidence 5566789999999999887776444444433 456677899999999999987653 443 3444457778889999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HHcCCHHH
Q 043311 139 KEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAF---VRAQKVDE 215 (257)
Q Consensus 139 ~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~---~~~~~~~~ 215 (257)
+.|...++.+.+.. +-+...+..+...+...|+ ++.+.++++.+.+.++.++......-..++ ...+..+.
T Consensus 170 ~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d-----~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~ 243 (409)
T TIGR00540 170 HAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGA-----WQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADE 243 (409)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhh-----HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999875 4467788899999999555 999999999988876543322211111111 22222222
Q ss_pred HHHHHHHHHHCC---CCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 216 ARGLLQQMKAKG---FVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 216 a~~~~~~m~~~g---~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
+.+.+..+.... .+.+...+..+...+...|+.+.|.++.+
T Consensus 244 ~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~ 287 (409)
T TIGR00540 244 GIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIF 287 (409)
T ss_pred CHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 223333333321 11366677777777777777777776654
No 53
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.28 E-value=9e-06 Score=66.06 Aligned_cols=148 Identities=15% Similarity=0.130 Sum_probs=95.2
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcc
Q 043311 96 ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNA 175 (257)
Q Consensus 96 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~ 175 (257)
.+...|++++|++++..- -+.......+..|.+.++++.|.+.++.|.+.+ .| .+...+..++.....+ .
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g-~ 180 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATG-G 180 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHT-T
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhC-c
Confidence 345567788887776542 356677777788888888888888888887642 23 4445556655543321 1
Q ss_pred hhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCch-hhHHhh
Q 043311 176 KILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFR-GVINIL 254 (257)
Q Consensus 176 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~-~~~~~l 254 (257)
+.+.+|..+|+++.+. ..++..+.|.+.-++...|++++|.+++.+..+.. .-|..|+..++..+...|+. +.+.++
T Consensus 181 e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp TCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred hhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHH
Confidence 3477888888887654 55677777888888888888888888888866543 33566777777777777766 445444
Q ss_pred h
Q 043311 255 F 255 (257)
Q Consensus 255 ~ 255 (257)
+
T Consensus 259 l 259 (290)
T PF04733_consen 259 L 259 (290)
T ss_dssp H
T ss_pred H
Confidence 3
No 54
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.27 E-value=6.6e-06 Score=62.47 Aligned_cols=71 Identities=17% Similarity=0.277 Sum_probs=55.2
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----------------ChHHHHHHHHHHHHCCCCCCHHHHHH
Q 043311 99 KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG----------------QGKEALRVFMRMLASGVAPNAYTYAV 162 (257)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~----------------~~~~a~~~~~~m~~~g~~~~~~t~~~ 162 (257)
+.|+++-....+..|.+-|+.-|..+|+.||+.+=+.. +-+-|.+++++|...|+.||..|+..
T Consensus 64 RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ 143 (228)
T PF06239_consen 64 RRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQM 143 (228)
T ss_pred CcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 46899999999999999999999999999999987643 23456666666666666666666666
Q ss_pred HHHHHHh
Q 043311 163 LIKGLAA 169 (257)
Q Consensus 163 ll~~~~~ 169 (257)
+++.+++
T Consensus 144 ll~iFG~ 150 (228)
T PF06239_consen 144 LLNIFGR 150 (228)
T ss_pred HHHHhcc
Confidence 6666665
No 55
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.22 E-value=1.4e-05 Score=71.56 Aligned_cols=133 Identities=26% Similarity=0.306 Sum_probs=101.5
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------------------------CCCCCHHHHHHH
Q 043311 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS------------------------GVAPNAYTYAVL 163 (257)
Q Consensus 108 ~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------------------------g~~~~~~t~~~l 163 (257)
.++-.++..|+.|+-+||..+|.-|+..|+++.|- +|.-|+-. --.|...||+.+
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~L 89 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNL 89 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHH
Confidence 56788999999999999999999999999998887 77666431 125678999999
Q ss_pred HHHHHhccC---------------------------------------------------CcchhHHHHHHHH-------
Q 043311 164 IKGLAAAAD---------------------------------------------------GNAKILGDAQKYL------- 185 (257)
Q Consensus 164 l~~~~~~~~---------------------------------------------------~~~~~~~~a~~~~------- 185 (257)
+.+|..+|| ...|.|+.+.+++
T Consensus 90 l~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa 169 (1088)
T KOG4318|consen 90 LKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSA 169 (1088)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCccc
Confidence 999999998 0113333333332
Q ss_pred ---------HHH-------------HhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043311 186 ---------MEM-------------VGKGM-RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241 (257)
Q Consensus 186 ---------~~m-------------~~~g~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 241 (257)
+++ .+.+. .|+..+|.+++.....+|+.+.|..++.+|.++|+..+..=|-.++.+
T Consensus 170 ~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g 248 (1088)
T KOG4318|consen 170 WNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG 248 (1088)
T ss_pred ccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc
Confidence 111 11112 589999999999999999999999999999999998888766666655
No 56
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.22 E-value=0.00029 Score=61.39 Aligned_cols=195 Identities=15% Similarity=0.091 Sum_probs=151.5
Q ss_pred ccCCCCCCcccccc---ccccCCCCHHHHHHHHHHHHhC-CCCCcHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCCC-H
Q 043311 49 TKSKLPPPYDPFKK---VVDEEPTDPRNLQEIFHKMRTE-GLTNNAV-KMFDALSKDGLTHEALQLFAQIKDKGHMPD-V 122 (257)
Q Consensus 49 ~~~~~~p~~~~~~~---~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~-~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~ 122 (257)
+...+.|+.-.... ..|-..|+.+.|...|++..+. .--|++. .|-.++-..|++.+|.+.|...... .|+ .
T Consensus 277 rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~ha 354 (966)
T KOG4626|consen 277 RALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHA 354 (966)
T ss_pred HHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccH
Confidence 33455666444333 7888999999999999998874 3345544 5888888999999999999988774 343 5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHH-HHH
Q 043311 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAG-TYT 201 (257)
Q Consensus 123 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~ 201 (257)
...+.|=..|..-|.++.|..+|..-.+-. +--...++.|-..|-. .|++++|...+++... +.|+.. .|+
T Consensus 355 dam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kq-----qgnl~~Ai~~Ykealr--I~P~fAda~~ 426 (966)
T KOG4626|consen 355 DAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQ-----QGNLDDAIMCYKEALR--IKPTFADALS 426 (966)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHh-----cccHHHHHHHHHHHHh--cCchHHHHHH
Confidence 678889999999999999999998887642 2234678888888888 5559999999988764 677763 688
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhcCCchhhHHhhh
Q 043311 202 AVFEAFVRAQKVDEARGLLQQMKAKGFVPD-EKAVKEALIDKRGQGFRGVINILF 255 (257)
Q Consensus 202 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~~~~l~ 255 (257)
.+=..|-..|+.+.|...+.+...- .|. ...++.|-..+..+|+...|..-+
T Consensus 427 NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY 479 (966)
T KOG4626|consen 427 NMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSY 479 (966)
T ss_pred hcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHH
Confidence 8888888889999999999988764 343 567888888899999988887655
No 57
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.22 E-value=0.00019 Score=60.27 Aligned_cols=182 Identities=13% Similarity=0.175 Sum_probs=106.7
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcH--HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNA--VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 140 (257)
...-.+|+++.|.+.|++.......-.. ..+--.+-+.|+.++|++.|-.+..- +.-+..+.--+-..|-...+...
T Consensus 498 n~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aq 576 (840)
T KOG2003|consen 498 NIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQ 576 (840)
T ss_pred ceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHH
Confidence 4555689999999999988875322111 11223445566777777766554321 01123333333334444444444
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCC-----------------------------cchhHHHHHHHHHHHHhC
Q 043311 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAAADG-----------------------------NAKILGDAQKYLMEMVGK 191 (257)
Q Consensus 141 a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~-----------------------------~~~~~~~a~~~~~~m~~~ 191 (257)
|.+++.+.-.. ++.|.....-+-..|-+-||- +-..++++..+|+...-
T Consensus 577 aie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal- 654 (840)
T KOG2003|consen 577 AIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL- 654 (840)
T ss_pred HHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh-
Confidence 44444333222 333444444444444444430 03446777777776532
Q ss_pred CCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchh
Q 043311 192 GMRPNAGTYTAVFEAFVR-AQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRG 249 (257)
Q Consensus 192 g~~p~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 249 (257)
+.|+..-|..+|..|.+ .|++..|.++|+...+. ++-|...+.-|++-|..-|..+
T Consensus 655 -iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 655 -IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred -cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccchh
Confidence 67889999988877664 68999999999887654 5667777777778787777654
No 58
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.21 E-value=1.9e-05 Score=66.87 Aligned_cols=107 Identities=19% Similarity=0.215 Sum_probs=78.3
Q ss_pred ccccCCCCHHHHHHHHHHHHhCC----CCCcH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEG----LTNNA-VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ 137 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~----~~p~~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 137 (257)
..+...-+++.+..++....... +.|.. .++++.|.+.|..+.+++++..=.+.|+-||..++|.||+.+.+.|+
T Consensus 74 n~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~ 153 (429)
T PF10037_consen 74 NNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGN 153 (429)
T ss_pred hhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhccc
Confidence 45555666777777777666531 22332 25788888888888888888887888888888888888888888888
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043311 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169 (257)
Q Consensus 138 ~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~ 169 (257)
+..|.++..+|...+...+..|+...+.+|.+
T Consensus 154 ~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 154 YKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 88888888887777666777777777777777
No 59
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.21 E-value=0.00011 Score=58.91 Aligned_cols=190 Identities=10% Similarity=0.047 Sum_probs=132.2
Q ss_pred hhhcccCCCCccchh---hcccCCCCCCcccccc----ccccCCCCHHHHHHHHHHHHhCCC-CCcHH-HHHHHHHhcCC
Q 043311 32 QRSLSSSSDQPTKKY---VNTKSKLPPPYDPFKK----VVDEEPTDPRNLQEIFHKMRTEGL-TNNAV-KMFDALSKDGL 102 (257)
Q Consensus 32 ~~~~~~~~~~~~~~~---~~~~~~~~p~~~~~~~----~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~-~ll~~~~~~~~ 102 (257)
..+-+.+..+++-++ +.+.++++-+...+.+ .-|-..|-++.|..+|..+.+.|- .+.+. .|+..|-+..+
T Consensus 77 nLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~tre 156 (389)
T COG2956 77 NLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATRE 156 (389)
T ss_pred HHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhH
Confidence 334445555555433 7777777666544444 566789999999999999998553 44443 59999999999
Q ss_pred hHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhH
Q 043311 103 THEALQLFAQIKDKGHMPDV----VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKIL 178 (257)
Q Consensus 103 ~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~ 178 (257)
|++|.++-+.+.+.+-++.. ..|.-+-..+.-..+.+.|..++.+-.+.+- -....-..+=+.... .|.+
T Consensus 157 W~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~-~cvRAsi~lG~v~~~-----~g~y 230 (389)
T COG2956 157 WEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADK-KCVRASIILGRVELA-----KGDY 230 (389)
T ss_pred HHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCc-cceehhhhhhHHHHh-----ccch
Confidence 99999999988887544432 2355555566667788889988888776531 122332333344455 3448
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 043311 179 GDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227 (257)
Q Consensus 179 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 227 (257)
+.|.+.++...+.+..--..+...|..+|...|+.++....+.++.+..
T Consensus 231 ~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 231 QKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 8888888888876544455678888889999999988888888887653
No 60
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.11 E-value=0.00071 Score=56.93 Aligned_cols=124 Identities=10% Similarity=0.116 Sum_probs=86.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~ 172 (257)
|-+.|-+.|+-..|.+.+-+--.. ++-++.+..=|-.-|....-++++..+|++-.- +.|+..-|..++..|.+
T Consensus 598 l~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~r--- 671 (840)
T KOG2003|consen 598 LADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFR--- 671 (840)
T ss_pred HHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHH---
Confidence 344455555555555544333222 334555555555666666778888888877543 79999999999999976
Q ss_pred CcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043311 173 GNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225 (257)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 225 (257)
+.|++.+|..++.+.... ++-|......|++.+...|. .++.++-+++.+
T Consensus 672 -rsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl-~d~key~~klek 721 (840)
T KOG2003|consen 672 -RSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL-KDAKEYADKLEK 721 (840)
T ss_pred -hcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc-hhHHHHHHHHHH
Confidence 366799999999998864 77788888889998888774 566666666554
No 61
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.08 E-value=0.00013 Score=58.82 Aligned_cols=154 Identities=14% Similarity=0.052 Sum_probs=122.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhc
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAV-LIKGLAAA 170 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~-ll~~~~~~ 170 (257)
.+-++|.+.|.+.+|.+-|+.-.+. .|-+.||-.|-++|.+..+.+.|+.+|.+-.+. .|-.+||-. +.+.+..
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea- 302 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA- 302 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH-
Confidence 3889999999999999999877664 577888999999999999999999999987764 666677654 4445555
Q ss_pred cCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhh
Q 043311 171 ADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGV 250 (257)
Q Consensus 171 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 250 (257)
.++.+++.+++....+.. ..+++...++-.+|.=.++.+.|+++|+++...|+. +...|+.+--.|.-.+.++.
T Consensus 303 ----m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 303 ----MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred ----HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhh
Confidence 444889999998877642 335666777777888889999999999999999986 66788888888888887777
Q ss_pred HHhhhc
Q 043311 251 INILFG 256 (257)
Q Consensus 251 ~~~l~~ 256 (257)
+..-|.
T Consensus 377 ~L~sf~ 382 (478)
T KOG1129|consen 377 VLPSFQ 382 (478)
T ss_pred hHHHHH
Confidence 655543
No 62
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.08 E-value=0.00047 Score=65.01 Aligned_cols=223 Identities=10% Similarity=0.076 Sum_probs=143.9
Q ss_pred cccchhhhhhhhcccCCCCccchhhcccCC-CCCC--cccccc-----ccccCCCCHHHHHHHHHHHHhCCCCCcHH-HH
Q 043311 23 TNTRVNATLQRSLSSSSDQPTKKYVNTKSK-LPPP--YDPFKK-----VVDEEPTDPRNLQEIFHKMRTEGLTNNAV-KM 93 (257)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~--~~~~~~-----~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~l 93 (257)
....|-.++...+.-+....++....+..+ +.+. ..-.++ ..--.-|.-+...++|++.++.--.-... +|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 344556666666666666666666444322 2222 111111 22234456667777777777743222222 57
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhc
Q 043311 94 FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAY---TYAVLIKGLAAA 170 (257)
Q Consensus 94 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~---t~~~ll~~~~~~ 170 (257)
...|-+....++|-++|+.|.+. +.-...+|...+..+.+.++-++|..++.+-.+. -|-.. ...-....=.+.
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhc
Confidence 77888888888888888888765 3345667888888888888878888888776653 23311 112222222343
Q ss_pred cCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhcCCch
Q 043311 171 ADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE--KAVKEALIDKRGQGFR 248 (257)
Q Consensus 171 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~ 248 (257)
|| .+.+..+|+..... .+--.-.|+..|+.=.+.|+.+.+.++|++....++.|-. .-|..-+..-...|+.
T Consensus 1614 GD-----aeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1614 GD-----AERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDE 1687 (1710)
T ss_pred CC-----chhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCch
Confidence 33 78888899888764 2335678999999999999999999999999999887753 4556666666667888
Q ss_pred hhHHhh
Q 043311 249 GVINIL 254 (257)
Q Consensus 249 ~~~~~l 254 (257)
+.+|.+
T Consensus 1688 ~~vE~V 1693 (1710)
T KOG1070|consen 1688 KNVEYV 1693 (1710)
T ss_pred hhHHHH
Confidence 777765
No 63
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.07 E-value=9.8e-05 Score=64.32 Aligned_cols=154 Identities=14% Similarity=0.135 Sum_probs=115.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC--------------------------------C-CCCHHHHHHHHHHHHhcCCh
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKG--------------------------------H-MPDVVAHTAVIEAYASAGQG 138 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g--------------------------------~-~p~~~~~~~li~~~~~~~~~ 138 (257)
.+-++|+..+++++|.++|+..++.. . +-.+.+|-++=.+|.-.++.
T Consensus 358 q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh 437 (638)
T KOG1126|consen 358 QLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDH 437 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHH
Confidence 36778999999999999999887542 1 13467788888889999999
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHH---HHHHHcCCHH
Q 043311 139 KEALRVFMRMLASGVAP-NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVF---EAFVRAQKVD 214 (257)
Q Consensus 139 ~~a~~~~~~m~~~g~~~-~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li---~~~~~~~~~~ 214 (257)
+.|...|++-.+- .| ..++|+.+=.-+.. ...+|.|...|..- +..|..+||+.- -.|.+.++++
T Consensus 438 ~~Aik~f~RAiQl--dp~faYayTLlGhE~~~-----~ee~d~a~~~fr~A----l~~~~rhYnAwYGlG~vy~Kqek~e 506 (638)
T KOG1126|consen 438 DTAIKCFKRAIQL--DPRFAYAYTLLGHESIA-----TEEFDKAMKSFRKA----LGVDPRHYNAWYGLGTVYLKQEKLE 506 (638)
T ss_pred HHHHHHHHHhhcc--CCccchhhhhcCChhhh-----hHHHHhHHHHHHhh----hcCCchhhHHHHhhhhheeccchhh
Confidence 9999999888763 44 66777766555555 23388888888776 456788888764 4578889999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 215 EARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 215 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
.|+--|++..+-+ +-|.+....+-..+.+.|..++|..+|+|
T Consensus 507 ~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~ 548 (638)
T KOG1126|consen 507 FAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEK 548 (638)
T ss_pred HHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHH
Confidence 9999888877643 23566677777788888999998888864
No 64
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.05 E-value=0.0038 Score=51.67 Aligned_cols=214 Identities=11% Similarity=0.080 Sum_probs=132.5
Q ss_pred cccCCCCccchhhccc--CCCCCCcccccc--ccccCCCCHHHHHHHHHHHHhCCCCCcHH---HHHHHHHhcCChHHHH
Q 043311 35 LSSSSDQPTKKYVNTK--SKLPPPYDPFKK--VVDEEPTDPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEAL 107 (257)
Q Consensus 35 ~~~~~~~~~~~~~~~~--~~~~p~~~~~~~--~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~ll~~~~~~~~~~~a~ 107 (257)
+..+++..+.+...+. .+-.|. ..|.. .+.-+.||.+.+.+.+.+..+..-.++.. +.-+.....|+.+.|.
T Consensus 95 l~eG~~~qAEkl~~rnae~~e~p~-l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 95 LFEGDFQQAEKLLRRNAEHGEQPV-LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred HhcCcHHHHHHHHHHhhhcCcchH-HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHH
Confidence 3345555555553332 222222 23333 66678889999999988888863333332 4566778889999988
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhccCCcchhHHH
Q 043311 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA-------YTYAVLIKGLAAAADGNAKILGD 180 (257)
Q Consensus 108 ~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~-------~t~~~ll~~~~~~~~~~~~~~~~ 180 (257)
.-.++..+.+ .-++.......++|.+.|++.....++..|.+.|+--|+ .+|..+++-+...++ .+.
T Consensus 174 ~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~-----~~g 247 (400)
T COG3071 174 ENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG-----SEG 247 (400)
T ss_pred HHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc-----chH
Confidence 8888777653 236778899999999999999999999999999876554 677778876655333 222
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-----------------------------
Q 043311 181 AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD----------------------------- 231 (257)
Q Consensus 181 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----------------------------- 231 (257)
-...|+....+ .+-+...-.+++.-+.+.|+.++|.++..+-.+++..|+
T Consensus 248 L~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~ 326 (400)
T COG3071 248 LKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPE 326 (400)
T ss_pred HHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCC
Confidence 23333333321 222344444445555555555555555554444333322
Q ss_pred -HHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 232 -EKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 232 -~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
+-.+.+|=.-|.+++.+++|...|+
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~le 352 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALE 352 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 2455566666777777777777664
No 65
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.04 E-value=0.0012 Score=51.95 Aligned_cols=162 Identities=16% Similarity=0.144 Sum_probs=90.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCH-HHHHHHHHHHH
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGH-MPD-VVAHTAVIEAYASAGQGKEALRVFMRMLASGVA-PNA-YTYAVLIKGLA 168 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-~~~-~t~~~ll~~~~ 168 (257)
....+.+.|+++.|...|++..+... .|. ...+..+-.++...|++++|...|+++.+..-. +.. .++..+-..+.
T Consensus 39 ~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~ 118 (235)
T TIGR03302 39 EAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNY 118 (235)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHH
Confidence 44455666666666666666654311 111 134455556666666666666666666643211 111 12222222222
Q ss_pred hcc---CCcchhHHHHHHHHHHHHhCCCCCCHH-HH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 043311 169 AAA---DGNAKILGDAQKYLMEMVGKGMRPNAG-TY-----------------TAVFEAFVRAQKVDEARGLLQQMKAKG 227 (257)
Q Consensus 169 ~~~---~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~-----------------~~li~~~~~~~~~~~a~~~~~~m~~~g 227 (257)
... ..+.|..+.|.+.|+.+... .|+.. .+ -.+-..+.+.|++.+|...+++..+..
T Consensus 119 ~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~ 196 (235)
T TIGR03302 119 NQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENY 196 (235)
T ss_pred HhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHC
Confidence 210 01124466666666666543 23221 11 134456778899999999999988762
Q ss_pred --CCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 228 --FVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 228 --~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
-......+..+..++...|+.+.+..+++
T Consensus 197 p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~ 227 (235)
T TIGR03302 197 PDTPATEEALARLVEAYLKLGLKDLAQDAAA 227 (235)
T ss_pred CCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 12245678888889999999998888764
No 66
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=0.0014 Score=55.35 Aligned_cols=184 Identities=13% Similarity=0.122 Sum_probs=144.9
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCC-CCcHH-H----------------------------------HHHHHHhcCChHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGL-TNNAV-K----------------------------------MFDALSKDGLTHEA 106 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~-~----------------------------------ll~~~~~~~~~~~a 106 (257)
.+.-...|++.|.++|+++.+... ..+.. + +-+-|+-.+..+.|
T Consensus 270 ~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKA 349 (559)
T KOG1155|consen 270 AASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKA 349 (559)
T ss_pred HHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHH
Confidence 555678999999999999998632 21110 0 12223344566888
Q ss_pred HHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHH
Q 043311 107 LQLFAQIKDKGHMPD-VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185 (257)
Q Consensus 107 ~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~ 185 (257)
...|+...+- .|. ...|+.|=.=|..-++...|.+-++.-.+-+ +.|-+.|-.+=++|.- .+...-|+-.|
T Consensus 350 v~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYei-----m~Mh~YaLyYf 421 (559)
T KOG1155|consen 350 VMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEI-----MKMHFYALYYF 421 (559)
T ss_pred HHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHH-----hcchHHHHHHH
Confidence 8888887774 343 4577777777999999999999999888764 5588889889999988 55688888888
Q ss_pred HHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 186 MEMVGKGMRP-NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 186 ~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
++.... +| |...|.+|=++|.+.+++++|++.|.+....|- .+...+..+-..+.+-++.+.|.+.|+|
T Consensus 422 qkA~~~--kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l~~LakLye~l~d~~eAa~~yek 491 (559)
T KOG1155|consen 422 QKALEL--KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSALVRLAKLYEELKDLNEAAQYYEK 491 (559)
T ss_pred HHHHhc--CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 887763 44 788999999999999999999999999998873 4778999999999999999999988875
No 67
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.00 E-value=0.0025 Score=50.06 Aligned_cols=145 Identities=17% Similarity=0.116 Sum_probs=113.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCC
Q 043311 94 FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADG 173 (257)
Q Consensus 94 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~ 173 (257)
...|++.|++++|++...... +......=...+.+..+.+.|.+.+++|.+- -+..|.+-|.+++.+...+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhcc
Confidence 446789999999999877622 3444444455567778899999999999864 2678888888888876553
Q ss_pred cchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhh
Q 043311 174 NAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGV 250 (257)
Q Consensus 174 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 250 (257)
.+.+.+|.-+|++|-+. ..|+.-+-|-...++...|++++|..++++..++.- -+..|...++......|....
T Consensus 186 -gek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~-~dpetL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 186 -GEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA-KDPETLANLIVLALHLGKDAE 259 (299)
T ss_pred -chhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-CCHHHHHHHHHHHHHhCCChH
Confidence 34489999999999764 678999999999999999999999999999998753 367788888888877777643
No 68
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.94 E-value=0.0045 Score=54.37 Aligned_cols=212 Identities=12% Similarity=0.109 Sum_probs=126.9
Q ss_pred cCCCCccchhhcccCCCCCCcccccc---ccccCCCCHHHHHHHHHHHHhCCCCCcHH-H-HHHHHHh-----cCChHHH
Q 043311 37 SSSDQPTKKYVNTKSKLPPPYDPFKK---VVDEEPTDPRNLQEIFHKMRTEGLTNNAV-K-MFDALSK-----DGLTHEA 106 (257)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~p~~~~~~~---~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~-ll~~~~~-----~~~~~~a 106 (257)
++....+-..+.+.....+|...+.- ..+.+.|+.++|..+|..+.+.+...... . +..+..- ....+..
T Consensus 17 ~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~ 96 (517)
T PF12569_consen 17 AGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKL 96 (517)
T ss_pred CCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHH
Confidence 44555555555555555555444433 66777888888888888887764322211 1 3333311 1245666
Q ss_pred HHHHHHHHhCCCC------------CC-------------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHC----
Q 043311 107 LQLFAQIKDKGHM------------PD-------------------VVAHTAVIEAYASAGQGKEALRVFMRMLAS---- 151 (257)
Q Consensus 107 ~~~~~~m~~~g~~------------p~-------------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---- 151 (257)
.++|+++.+.-.. ++ +.+|+.|-..|......+-..+++......
T Consensus 97 ~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~ 176 (517)
T PF12569_consen 97 LELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESN 176 (517)
T ss_pred HHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhccc
Confidence 7777776543100 00 223444444444444444444455444322
Q ss_pred C----------CCCCH--HHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHH
Q 043311 152 G----------VAPNA--YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN-AGTYTAVFEAFVRAQKVDEARG 218 (257)
Q Consensus 152 g----------~~~~~--~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~ 218 (257)
| -.|+. +++.-+-++|-..|+ .++|.++++...++ .|+ ...|.+--+.+-+.|++.+|.+
T Consensus 177 ~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~-----~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~ 249 (517)
T PF12569_consen 177 GSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGD-----YEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAE 249 (517)
T ss_pred CCCCCccccccCCchHHHHHHHHHHHHHHHhCC-----HHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 1 12344 344556667777444 88899888877765 465 4567777788888899999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 219 LLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 219 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
.++..+.... -|...=+.....+.+.|..+.|++++.
T Consensus 250 ~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~ 286 (517)
T PF12569_consen 250 AMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTAS 286 (517)
T ss_pred HHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9888887653 366777777778888898888887754
No 69
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.94 E-value=0.0024 Score=52.27 Aligned_cols=180 Identities=15% Similarity=0.021 Sum_probs=103.2
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCC-CcH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLT-NNA-VKMFDALSKDGLTHEALQLFAQIKDKGHMPD-VVAHTAVIEAYASAGQGK 139 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~-p~~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~ 139 (257)
..+.+.|+++.|...|.+..+..-. +.. ..+-..+...|+++.|.+.|+...+. .|+ ..+|..+-.++...|+++
T Consensus 72 ~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~ 149 (296)
T PRK11189 72 VLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIALYYGGRYE 149 (296)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHH
Confidence 5667888888888888888774321 121 13666778888888888888888763 343 567777777788888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 043311 140 EALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGL 219 (257)
Q Consensus 140 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~ 219 (257)
+|.+.|+...+. .|+..........+.. .+..++|...|...... ..|+...+ .+.. ...|+++.+ +.
T Consensus 150 eA~~~~~~al~~--~P~~~~~~~~~~l~~~-----~~~~~~A~~~l~~~~~~-~~~~~~~~-~~~~--~~lg~~~~~-~~ 217 (296)
T PRK11189 150 LAQDDLLAFYQD--DPNDPYRALWLYLAES-----KLDPKQAKENLKQRYEK-LDKEQWGW-NIVE--FYLGKISEE-TL 217 (296)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHc-----cCCHHHHHHHHHHHHhh-CCccccHH-HHHH--HHccCCCHH-HH
Confidence 888888887764 3332211111111222 23377777777554322 12222111 1222 223444333 23
Q ss_pred HHHHHHC---CC--CC-CHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 220 LQQMKAK---GF--VP-DEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 220 ~~~m~~~---g~--~p-~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
+..+... .+ .| ....|..+-..+...|+.+.|...|+
T Consensus 218 ~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~ 260 (296)
T PRK11189 218 MERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFK 260 (296)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4444321 11 01 22456666667777777777777665
No 70
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.94 E-value=0.0003 Score=56.75 Aligned_cols=155 Identities=14% Similarity=0.078 Sum_probs=83.9
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAV-KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEA 141 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 141 (257)
..+.+.|.+++|.+.++.-.+..-.|+.. -|-++|.+...++.|+.+|.+-.+. ++-|+....-+-+.+-..++.++|
T Consensus 231 kCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~~~~a 309 (478)
T KOG1129|consen 231 KCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQQEDA 309 (478)
T ss_pred HHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHhHHHH
Confidence 34557777777777777666655555544 3556777777777777777766553 222332223344445555556666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 043311 142 LRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221 (257)
Q Consensus 142 ~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 221 (257)
.++|+...+.. ..++.....+-.+|.- .++.|.|+.++..+.+.|+. +...|+.+--+|.-.+++|.++-.|+
T Consensus 310 ~~lYk~vlk~~-~~nvEaiAcia~~yfY-----~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 310 LQLYKLVLKLH-PINVEAIACIAVGYFY-----DNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HHHHHHHHhcC-Cccceeeeeeeecccc-----CCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 66665555431 2233333333333333 33456666666666555543 44455544444555555555555555
Q ss_pred HHHH
Q 043311 222 QMKA 225 (257)
Q Consensus 222 ~m~~ 225 (257)
+...
T Consensus 383 RAls 386 (478)
T KOG1129|consen 383 RALS 386 (478)
T ss_pred HHHh
Confidence 5543
No 71
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.92 E-value=0.0021 Score=55.95 Aligned_cols=189 Identities=17% Similarity=0.106 Sum_probs=137.3
Q ss_pred ccccCCCCHHHHHHHHHHHHhC-----CC-CCcHH----HHHHHHHhcCChHHHHHHHHHHHh---C--CC-CCCHH-HH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTE-----GL-TNNAV----KMFDALSKDGLTHEALQLFAQIKD---K--GH-MPDVV-AH 125 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~-----~~-~p~~~----~ll~~~~~~~~~~~a~~~~~~m~~---~--g~-~p~~~-~~ 125 (257)
..+...+++.+|..+|+++... |- .|... .|-.+|.+.|++++|...++...+ + |. .|.+. .+
T Consensus 249 ~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l 328 (508)
T KOG1840|consen 249 LVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQL 328 (508)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHH
Confidence 6778999999999999999862 21 22222 255579999999998887765532 1 22 23333 46
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHh----CC--
Q 043311 126 TAVIEAYASAGQGKEALRVFMRMLAS---GVAP----NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG----KG-- 192 (257)
Q Consensus 126 ~~li~~~~~~~~~~~a~~~~~~m~~~---g~~~----~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~----~g-- 192 (257)
+.+...|...+++++|..+++.-.+. -..+ -..+|+.+-..|-. .|++++|.+++..... .+
T Consensus 329 ~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~-----~gk~~ea~~~~k~ai~~~~~~~~~ 403 (508)
T KOG1840|consen 329 SELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLK-----MGKYKEAEELYKKAIQILRELLGK 403 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHH-----hcchhHHHHHHHHHHHHHHhcccC
Confidence 67777888899999999999775532 1222 24789999999999 6669999999887653 22
Q ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCC--CCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 193 MRPN-AGTYTAVFEAFVRAQKVDEARGLLQQMKA----KGF--VPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 193 ~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~--~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
..+. ...++-|-..|.+.+...+|.++|.+-.. .|. +-...+|..|...|.+.|..+.|+++-+
T Consensus 404 ~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~ 474 (508)
T KOG1840|consen 404 KDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEE 474 (508)
T ss_pred cChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 2222 45678888999999999999999887653 232 2235788999999999999999998865
No 72
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.90 E-value=0.0013 Score=55.66 Aligned_cols=121 Identities=16% Similarity=0.214 Sum_probs=98.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcc
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA 171 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~ 171 (257)
+|+..+...++++.|.++|+++.+.. |+ ..-.+.+.+...++-.+|.+++++..+. .+-|......-.+.|.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcC
Confidence 47888888999999999999999874 55 4455788888888999999999998865 3446677777777788844
Q ss_pred CCcchhHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043311 172 DGNAKILGDAQKYLMEMVGKGMRPNA-GTYTAVFEAFVRAQKVDEARGLLQQMK 224 (257)
Q Consensus 172 ~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~ 224 (257)
+.+.|.++.++..+. .|+. .+|..|..+|.+.|+++.|+..+.-+-
T Consensus 249 -----~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 -----KYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred -----CHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 489999999999874 5655 599999999999999999998888764
No 73
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=0.0013 Score=56.61 Aligned_cols=200 Identities=15% Similarity=0.085 Sum_probs=140.0
Q ss_pred cccCCCCccchhhcccCCCCCCcccccc---ccccCCCCHHHHHHHHHHHHh--CCC-CCcHHHHHHHHHhcCChHHHHH
Q 043311 35 LSSSSDQPTKKYVNTKSKLPPPYDPFKK---VVDEEPTDPRNLQEIFHKMRT--EGL-TNNAVKMFDALSKDGLTHEALQ 108 (257)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~---~~~~~~~~~~~a~~~~~~m~~--~~~-~p~~~~ll~~~~~~~~~~~a~~ 108 (257)
...+..+++++++.+...+.|....-=+ ..++-.|.-+.|...|....+ .|. .|.. =+---|.+.++...|.+
T Consensus 323 l~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~L-Ylgmey~~t~n~kLAe~ 401 (611)
T KOG1173|consen 323 LMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSL-YLGMEYMRTNNLKLAEK 401 (611)
T ss_pred HHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHH-HHHHHHHHhccHHHHHH
Confidence 3345566666666666666655333222 555666666666666665554 232 2322 14445677889999999
Q ss_pred HHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCC----CCHHHHHHHHHHHHhccCCcchhHHHH
Q 043311 109 LFAQIKDKGHMP-DVVAHTAVIEAYASAGQGKEALRVFMRMLAS--GVA----PNAYTYAVLIKGLAAAADGNAKILGDA 181 (257)
Q Consensus 109 ~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~----~~~~t~~~ll~~~~~~~~~~~~~~~~a 181 (257)
.|.+... +-| |+...+-+=-.....+.+.+|..+|+.-... .+- .-.-+++.+=.+|.+ .+..++|
T Consensus 402 Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk-----l~~~~eA 474 (611)
T KOG1173|consen 402 FFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK-----LNKYEEA 474 (611)
T ss_pred HHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH-----HhhHHHH
Confidence 9988665 444 6677777777777788899999999887622 111 133456777777888 6669999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcC
Q 043311 182 QKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245 (257)
Q Consensus 182 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 245 (257)
...++.-... .+-+..+|.++--.|...|+++.|.+.|.+.. ++.||..+...++..+...
T Consensus 475 I~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 475 IDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHHHh
Confidence 9999987754 24488899999999999999999999999865 5789998999888866543
No 74
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.82 E-value=0.00027 Score=57.54 Aligned_cols=151 Identities=14% Similarity=0.097 Sum_probs=107.0
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCh
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAV-KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVA---HTAVIEAYASAGQG 138 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~---~~~li~~~~~~~~~ 138 (257)
.++...|+++.|++++..- -..... -.+..|.+.++++.|.+.++.|.+.. .|... ..+.+..+.-...+
T Consensus 110 ~i~~~~~~~~~AL~~l~~~----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG----GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDSILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHcCCHHHHHHHHHcc----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHhCchhH
Confidence 6778899999999888643 112222 36789999999999999999999853 34332 33334433334479
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH-HHHH
Q 043311 139 KEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV-DEAR 217 (257)
Q Consensus 139 ~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~-~~a~ 217 (257)
++|+.+|+++.+. ..++..+.+.+..+... .|++++|.+++++..+.+ +-+..+.-.+|-.....|+. +.+.
T Consensus 184 ~~A~y~f~El~~~-~~~t~~~lng~A~~~l~-----~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~ 256 (290)
T PF04733_consen 184 QDAFYIFEELSDK-FGSTPKLLNGLAVCHLQ-----LGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAE 256 (290)
T ss_dssp CHHHHHHHHHHCC-S--SHHHHHHHHHHHHH-----CT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred HHHHHHHHHHHhc-cCCCHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHH
Confidence 9999999998765 56788899988888888 455999999999976543 22455666677777777877 7788
Q ss_pred HHHHHHHHC
Q 043311 218 GLLQQMKAK 226 (257)
Q Consensus 218 ~~~~~m~~~ 226 (257)
+++.++...
T Consensus 257 ~~l~qL~~~ 265 (290)
T PF04733_consen 257 RYLSQLKQS 265 (290)
T ss_dssp HHHHHCHHH
T ss_pred HHHHHHHHh
Confidence 899888764
No 75
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.77 E-value=0.007 Score=43.89 Aligned_cols=95 Identities=12% Similarity=-0.094 Sum_probs=64.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043311 125 HTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVF 204 (257)
Q Consensus 125 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 204 (257)
+..+-..+...|++++|...|+...... +.+...|..+-..+.. .|++++|...|+...... +.+...+..+-
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~-----~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg 99 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMM-----LKEYTTAINFYGHALMLD-ASHPEPVYQTG 99 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHhcC-CCCcHHHHHHH
Confidence 4445566677777777777777776653 3366677777777777 444777777777776532 23556666677
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC
Q 043311 205 EAFVRAQKVDEARGLLQQMKAK 226 (257)
Q Consensus 205 ~~~~~~~~~~~a~~~~~~m~~~ 226 (257)
.++...|++++|...|++....
T Consensus 100 ~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 100 VCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 7777777778877777777663
No 76
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.76 E-value=0.0054 Score=48.24 Aligned_cols=157 Identities=15% Similarity=0.100 Sum_probs=110.2
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCC-CCcH----HHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCH-HHHHHHHHHHHhc
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGL-TNNA----VKMFDALSKDGLTHEALQLFAQIKDKGH-MPDV-VAHTAVIEAYASA 135 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~-~p~~----~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~~-~~~~~li~~~~~~ 135 (257)
..+...|+++.|...|++.....- .|.. ..+-.++.+.|+++.|...|+.+.+... .|.. .++..+-.++...
T Consensus 41 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~ 120 (235)
T TIGR03302 41 KEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQ 120 (235)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHh
Confidence 677789999999999999887432 2221 2467788999999999999999987532 1221 1344444444443
Q ss_pred --------CChHHHHHHHHHHHHCCCCCC-HHHHH-----------------HHHHHHHhccCCcchhHHHHHHHHHHHH
Q 043311 136 --------GQGKEALRVFMRMLASGVAPN-AYTYA-----------------VLIKGLAAAADGNAKILGDAQKYLMEMV 189 (257)
Q Consensus 136 --------~~~~~a~~~~~~m~~~g~~~~-~~t~~-----------------~ll~~~~~~~~~~~~~~~~a~~~~~~m~ 189 (257)
|+.++|.+.|+...+. .|+ ...+. .+-..+.+ .|+++.|...++...
T Consensus 121 ~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~-----~g~~~~A~~~~~~al 193 (235)
T TIGR03302 121 IDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLK-----RGAYVAAINRFETVV 193 (235)
T ss_pred cccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCChHHHHHHHHHHH
Confidence 6789999999999875 333 22221 22233455 455999999999987
Q ss_pred hCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 043311 190 GKG--MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK 226 (257)
Q Consensus 190 ~~g--~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 226 (257)
+.. -+.....+..+..++.+.|+.++|..+++.+..+
T Consensus 194 ~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 194 ENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 541 1223467889999999999999999999998765
No 77
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=97.74 E-value=0.00037 Score=55.16 Aligned_cols=105 Identities=17% Similarity=0.194 Sum_probs=67.5
Q ss_pred CCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCC
Q 043311 119 MPDVVAHTAVIEAYASA-----GQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193 (257)
Q Consensus 119 ~p~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~ 193 (257)
+-|-.+|-.++..|... +.++-...-++.|.+.|+..|..+|+.||+.+-+ +. +
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPK-----gk----------------f 122 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPK-----GK----------------F 122 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcc-----cc----------------c
Confidence 45677777777777654 5677777788888888888888888888887665 21 0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCc
Q 043311 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGF 247 (257)
Q Consensus 194 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 247 (257)
.....|....-.|-+. -..+.+++++|...|+.||..+-..|+.++.+.|.
T Consensus 123 -iP~nvfQ~~F~HYP~Q--Q~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 123 -IPQNVFQKVFLHYPQQ--QNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred -ccHHHHHHHHhhCchh--hhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 1112222222222222 24566777777777777777777777777776665
No 78
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.74 E-value=0.01 Score=54.18 Aligned_cols=137 Identities=13% Similarity=0.105 Sum_probs=93.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDV-VAHTAVIEAYASAGQGKEALRVFMRMLASGVAP-NAYTYAVLIKGLAAA 170 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~t~~~ll~~~~~~ 170 (257)
|-....+.|..++|..+++...+. .||. ...-.+..++.+.+++++|+..+++..+. .| +......+-.++..
T Consensus 92 La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~~l~~- 166 (694)
T PRK15179 92 VARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAKSWDE- 166 (694)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHH-
Confidence 445556778888888888888773 5654 46677777888888888888888888775 34 44445555555666
Q ss_pred cCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043311 171 ADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240 (257)
Q Consensus 171 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 240 (257)
.|.+++|..+|++....+ +-+..++..+-..+-..|+.++|...|+...+.- .|-...|+..+.
T Consensus 167 ----~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~ 230 (694)
T PRK15179 167 ----IGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV 230 (694)
T ss_pred ----hcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH
Confidence 444888888888887632 2235667777777778888888888888887652 234455555543
No 79
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.72 E-value=0.0016 Score=52.80 Aligned_cols=141 Identities=12% Similarity=0.173 Sum_probs=104.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKG-HMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAA 170 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~ 170 (257)
.+++.+-+.+..+.|..+|.+..+.+ ...++....++|. |...++.+.|..+|+...+. ...+...|...+..+.+.
T Consensus 6 ~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~ 83 (280)
T PF05843_consen 6 QYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKL 83 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHh
Confidence 57788888888999999999998753 3456666666665 33456677899999998876 566788899999999996
Q ss_pred cCCcchhHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 043311 171 ADGNAKILGDAQKYLMEMVGKGMRPNA---GTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDK 242 (257)
Q Consensus 171 ~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 242 (257)
++ .+.+..+|+..... +.++. ..|...|+-=.+.|+++.+.++.+++.+. .|+...+..++.-|
T Consensus 84 ~d-----~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 84 ND-----INNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp T------HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred Cc-----HHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence 66 99999999998765 33332 48999999999999999999999999874 45555555555443
No 80
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.72 E-value=0.0087 Score=46.16 Aligned_cols=183 Identities=15% Similarity=0.047 Sum_probs=131.6
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCC-CCcHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGL-TNNAV-KMFDALSKDGLTHEALQLFAQIKDKGHMPD-VVAHTAVIEAYASAGQGK 139 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~-~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~ 139 (257)
..|.+.|++..|..-+++..+..- .+... .+-..|-+.|..+.|.+-|+...+. .|+ -.+.|..=.-+|..|+++
T Consensus 43 l~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC~qg~~~ 120 (250)
T COG3063 43 LGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLCAQGRPE 120 (250)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHHhCCChH
Confidence 567788999999988888887532 22222 2455667888899999888887763 343 456666666678888999
Q ss_pred HHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 043311 140 EALRVFMRMLASG-VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218 (257)
Q Consensus 140 ~a~~~~~~m~~~g-~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 218 (257)
+|...|++-...- ..--..||..+--...+ .|..+.|...|+.-.+.. +-...+.-.+.+...+.|+...|..
T Consensus 121 eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~-----~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 121 EAMQQFERALADPAYGEPSDTLENLGLCALK-----AGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred HHHHHHHHHHhCCCCCCcchhhhhhHHHHhh-----cCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHH
Confidence 9999998877542 22233566666555556 555889999888877642 1133566777788888899999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhh
Q 043311 219 LLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINIL 254 (257)
Q Consensus 219 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l 254 (257)
++++....|. ++..+.---|+-..+.|+...+.++
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y 229 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRY 229 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHH
Confidence 9988887765 8888888888888888888777654
No 81
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.70 E-value=0.014 Score=45.13 Aligned_cols=196 Identities=16% Similarity=0.075 Sum_probs=127.1
Q ss_pred hhhhcccCCCCccchhhcccCCCCCCcccccc---ccccCCCCHHHHHHHHHHHHhCCCCCcHHHHHH----HHHhcCCh
Q 043311 31 LQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKK---VVDEEPTDPRNLQEIFHKMRTEGLTNNAVKMFD----ALSKDGLT 103 (257)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~---~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ll~----~~~~~~~~ 103 (257)
....+..++...+..-+++.....|+...-.. ..|.+.|+.+.|.+-|+...+. .|+...+++ .+|..|.+
T Consensus 42 al~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC~qg~~ 119 (250)
T COG3063 42 ALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLCAQGRP 119 (250)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHHhCCCh
Confidence 33455666666666666666666666433333 6777888888888888877763 333333333 44777888
Q ss_pred HHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHH
Q 043311 104 HEALQLFAQIKDKGHMPD-VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQ 182 (257)
Q Consensus 104 ~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~ 182 (257)
++|...|+...+...-+. ..+|..+--+..+.|+.+.|...|++-.+.. +-...+.-.+.+...+ .|....|.
T Consensus 120 ~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~-----~~~y~~Ar 193 (250)
T COG3063 120 EEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYK-----AGDYAPAR 193 (250)
T ss_pred HHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHh-----cccchHHH
Confidence 888888887777643332 3567777777778888888888888777653 2233455556666666 34477888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 043311 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKE 237 (257)
Q Consensus 183 ~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ 237 (257)
.+++.....+. ++..+.-..|+.--+.|+-+.+.++=..+.+. -|.+.-|-.
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~q~ 245 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEYQT 245 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHh
Confidence 77777766554 77777777777777788877777776666543 455444433
No 82
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.69 E-value=0.0061 Score=57.96 Aligned_cols=184 Identities=10% Similarity=0.096 Sum_probs=141.6
Q ss_pred ccccCCCCHHHHHHHHHHHHhC-CCCCc------HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTE-GLTNN------AVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASA 135 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~-~~~p~------~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 135 (257)
....+.++.+.|.++.++.+.. +.... +.++++.-...|.-+...++|++..+.. -.-.+|..|...|.+.
T Consensus 1466 af~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~L~~iy~k~ 1543 (1710)
T KOG1070|consen 1466 AFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLKLLGIYEKS 1543 (1710)
T ss_pred HHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHh
Confidence 4556889999999999988863 23222 2246666677788888999999999863 2345789999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCC
Q 043311 136 GQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA---GTYTAVFEAFVRAQK 212 (257)
Q Consensus 136 ~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~~~~ 212 (257)
...++|-++|+.|.++ ..-....|.-....+.+..+ -+.|.++++...+. -|.. ....-.+..-.+.|+
T Consensus 1544 ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne-----~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1544 EKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNE-----AEAARELLKRALKS--LPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred hcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccH-----HHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhcCC
Confidence 9999999999999976 23466788888998888444 78899998887653 3443 334445555678899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 213 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
.+.+..+|+.....- +--...|+..|+.-.++|+...+..+|++
T Consensus 1616 aeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeR 1659 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFER 1659 (1710)
T ss_pred chhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHH
Confidence 999999999998763 22345899999999999999999999974
No 83
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.68 E-value=0.016 Score=50.98 Aligned_cols=175 Identities=16% Similarity=0.152 Sum_probs=124.7
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHhcCChHHHHHHHHHHHhC----C----------CCCCHHHH--HHHHHHHHhcC
Q 043311 73 NLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDK----G----------HMPDVVAH--TAVIEAYASAG 136 (257)
Q Consensus 73 ~a~~~~~~m~~~~~~p~~~~ll~~~~~~~~~~~a~~~~~~m~~~----g----------~~p~~~~~--~~li~~~~~~~ 136 (257)
.+...+..+...|+++-...|-..|.......-..+++...... + -.|+...| .-+-..|-..|
T Consensus 129 ~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g 208 (517)
T PF12569_consen 129 RLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLG 208 (517)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhC
Confidence 35555677777886555555666666555555556666655432 1 13445444 55566688899
Q ss_pred ChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 043311 137 QGKEALRVFMRMLASGVAPN-AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215 (257)
Q Consensus 137 ~~~~a~~~~~~m~~~g~~~~-~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 215 (257)
++++|++++++-.++ .|+ +..|..--+.+-+.|+ +.+|.+.++....... -|...=+-....+.++|+.++
T Consensus 209 ~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~-----~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~ 280 (517)
T PF12569_consen 209 DYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGD-----LKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEE 280 (517)
T ss_pred CHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHH
Confidence 999999999998886 444 7888888888889555 9999999999887543 267777778888999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHH--------HHHHHHhhcCCchhhHHhhh
Q 043311 216 ARGLLQQMKAKGFVPDEKAV--------KEALIDKRGQGFRGVINILF 255 (257)
Q Consensus 216 a~~~~~~m~~~g~~p~~~t~--------~~ll~~~~~~g~~~~~~~l~ 255 (257)
|.+++....+.+..|-...+ ...-.+|.+.|+.+.|.+-|
T Consensus 281 A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~ 328 (517)
T PF12569_consen 281 AEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRF 328 (517)
T ss_pred HHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999988764433222 23334688899988887765
No 84
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.67 E-value=0.0026 Score=55.44 Aligned_cols=189 Identities=17% Similarity=0.136 Sum_probs=133.2
Q ss_pred ccccCCCCHHHHHHHHHHHHhC-----CC-CCcHHH----HHHHHHhcCChHHHHHHHHHHHhC-----C-CCCCH-HHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTE-----GL-TNNAVK----MFDALSKDGLTHEALQLFAQIKDK-----G-HMPDV-VAH 125 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~-----~~-~p~~~~----ll~~~~~~~~~~~a~~~~~~m~~~-----g-~~p~~-~~~ 125 (257)
..|...|+++.|..++++..+. |. -|...+ +-..|...+++.+|..+|+++..- | ..|.+ .++
T Consensus 207 ~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l 286 (508)
T KOG1840|consen 207 EMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATL 286 (508)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 8899999999999999988764 32 233223 445778899999999999988642 1 22333 467
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH---C--C-CCCCHH-HHHHHHHHHHhccCCcchhHHHHHHHHHHHHh---CCCCC
Q 043311 126 TAVIEAYASAGQGKEALRVFMRMLA---S--G-VAPNAY-TYAVLIKGLAAAADGNAKILGDAQKYLMEMVG---KGMRP 195 (257)
Q Consensus 126 ~~li~~~~~~~~~~~a~~~~~~m~~---~--g-~~~~~~-t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~---~g~~p 195 (257)
+.|=.+|.+.|++++|...+++-.+ + | ..|... -++.+...|+. .+.++.|..+++...+ .-+.+
T Consensus 287 ~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~-----~~~~Eea~~l~q~al~i~~~~~g~ 361 (508)
T KOG1840|consen 287 NNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQS-----MNEYEEAKKLLQKALKIYLDAPGE 361 (508)
T ss_pred HHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHH-----hcchhHHHHHHHHHHHHHHhhccc
Confidence 7777789999999888887766432 1 2 223333 33444555556 4458899888886542 11223
Q ss_pred CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C-CCC-CHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 196 NA----GTYTAVFEAFVRAQKVDEARGLLQQMKAK-----G-FVP-DEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 196 ~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g-~~p-~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
+. .+|+.|-..|...|++++|.++|+..... | ..+ ....++.+-.+|.+.+..+.+.++|+
T Consensus 362 ~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~ 433 (508)
T KOG1840|consen 362 DNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFE 433 (508)
T ss_pred cchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHH
Confidence 32 57999999999999999999999988642 1 122 35677788888999999999999885
No 85
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.65 E-value=0.024 Score=47.50 Aligned_cols=154 Identities=9% Similarity=0.042 Sum_probs=104.9
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHHHHHH---HHHh----cCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHh
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAVKMFD---ALSK----DGLTHEALQLFAQIKDKGHMPDV-VAHTAVIEAYAS 134 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ll~---~~~~----~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~ 134 (257)
..+...|+++++.++++...+. .|+....+. .+.. .+..+.+.+.+.. ..+..|+. .....+-..+..
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~ 126 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDD--YPRDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEE 126 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHH
Confidence 5667889999999999988875 343322221 2222 3444555555544 22223333 344455567888
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHHcC
Q 043311 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM-RPNA--GTYTAVFEAFVRAQ 211 (257)
Q Consensus 135 ~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~-~p~~--~~~~~li~~~~~~~ 211 (257)
.|++++|...+++..+.. +.+...+..+-..+.. .|++++|..+++......- .|+. ..|-.+...+...|
T Consensus 127 ~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~-----~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G 200 (355)
T cd05804 127 AGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEM-----QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERG 200 (355)
T ss_pred cCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH-----cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCC
Confidence 999999999999998864 4456777888888888 4449999999998775321 2333 34556778899999
Q ss_pred CHHHHHHHHHHHHHC
Q 043311 212 KVDEARGLLQQMKAK 226 (257)
Q Consensus 212 ~~~~a~~~~~~m~~~ 226 (257)
++++|..++++....
T Consensus 201 ~~~~A~~~~~~~~~~ 215 (355)
T cd05804 201 DYEAALAIYDTHIAP 215 (355)
T ss_pred CHHHHHHHHHHHhcc
Confidence 999999999998643
No 86
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.64 E-value=0.019 Score=45.10 Aligned_cols=153 Identities=13% Similarity=0.054 Sum_probs=110.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~ 172 (257)
+-..+...|+-+....+....... ..-|....+..+....+.|++.+|...|++...- -++|..+|+.+=-+|.+.|+
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr 149 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGR 149 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccC
Confidence 444555666666666665553332 2345556667888888888888888888888765 36788888888888888554
Q ss_pred CcchhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhH
Q 043311 173 GNAKILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVI 251 (257)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~ 251 (257)
++.|..-|.+..+- .| +...+|.|--.+.-.|++..|..++.+....+- -|...-..+..+....|+.+.|
T Consensus 150 -----~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 150 -----FDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred -----hhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHH
Confidence 88888877776653 33 445677777778888888888888888877653 3566777777788888888888
Q ss_pred Hhhh
Q 043311 252 NILF 255 (257)
Q Consensus 252 ~~l~ 255 (257)
+.+-
T Consensus 222 ~~i~ 225 (257)
T COG5010 222 EDIA 225 (257)
T ss_pred Hhhc
Confidence 7764
No 87
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.63 E-value=0.0071 Score=43.03 Aligned_cols=105 Identities=14% Similarity=0.049 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHH
Q 043311 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTA 202 (257)
Q Consensus 123 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 202 (257)
.....+-..+...|++++|.+.|+.....+ +.+...|..+-..+.. .|+++.|..+++.....+ +.+...+..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~-----~~~~~~A~~~~~~~~~~~-p~~~~~~~~ 90 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQM-----LKEYEEAIDAYALAAALD-PDDPRPYFH 90 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcC-CCChHHHHH
Confidence 344555556666777777777777766543 3355666666666666 344777777777665442 224455555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 043311 203 VFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK 236 (257)
Q Consensus 203 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~ 236 (257)
+-..+...|+++.|...|++..+. .|+...+.
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 122 (135)
T TIGR02552 91 AAECLLALGEPESALKALDLAIEI--CGENPEYS 122 (135)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--ccccchHH
Confidence 556667777777777777776654 34544443
No 88
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.62 E-value=0.011 Score=45.30 Aligned_cols=162 Identities=12% Similarity=0.076 Sum_probs=106.4
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEAL 142 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 142 (257)
..|...|+++.+....+.+... . ..+...++.+++...+....+. -+.|...|..+-..|...|++++|.
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~~-~--------~~~~~~~~~~~~i~~l~~~L~~-~P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLADP-L--------HQFASQQTPEAQLQALQDKIRA-NPQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhCc-c--------ccccCchhHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 5566777777765444222211 1 1112355556666666665553 2356778999989999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHH-HhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 043311 143 RVFMRMLASGVAPNAYTYAVLIKGL-AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221 (257)
Q Consensus 143 ~~~~~m~~~g~~~~~~t~~~ll~~~-~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 221 (257)
..|++..+.. +-|...+..+-.++ ...|+ ...++|.+++++..+.+ +-+...+..+-..+...|++++|...|+
T Consensus 94 ~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~---~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 94 LAYRQALQLR-GENAELYAALATVLYYQAGQ---HMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhcCC---CCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999888763 33667777766654 44222 11488999999888753 2255677777788889999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHH
Q 043311 222 QMKAKGFVPDEKAVKEALID 241 (257)
Q Consensus 222 ~m~~~g~~p~~~t~~~ll~~ 241 (257)
++.+.. .|+..-+ .+|.+
T Consensus 169 ~aL~l~-~~~~~r~-~~i~~ 186 (198)
T PRK10370 169 KVLDLN-SPRVNRT-QLVES 186 (198)
T ss_pred HHHhhC-CCCccHH-HHHHH
Confidence 998763 4554443 33344
No 89
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.60 E-value=0.0054 Score=48.27 Aligned_cols=149 Identities=12% Similarity=0.064 Sum_probs=103.7
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHHH-HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH----HHHHHHhcCC
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAVK-MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA----VIEAYASAGQ 137 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~----li~~~~~~~~ 137 (257)
..|.+.|++++|.+..... ..-.... =...+.+..+++.|.+..+.|.+. -+..|.+- .|....-.+.
T Consensus 116 ~i~~~~~~~deAl~~~~~~----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek 188 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLG----ENLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEK 188 (299)
T ss_pred HHhhcCCChHHHHHHHhcc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchh
Confidence 7889999999999887762 1222221 245567888899999999999985 34455554 4444444567
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHH
Q 043311 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ-KVDEA 216 (257)
Q Consensus 138 ~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~-~~~~a 216 (257)
+..|+-+|++|.++ ..|+..+.+-....+.. .|++++|..++++.....-. +..|.-.+|-.....| +.+..
T Consensus 189 ~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~-----~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~ 261 (299)
T KOG3081|consen 189 IQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQ-----LGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVT 261 (299)
T ss_pred hhhHHHHHHHHhcc-cCCChHHHccHHHHHHH-----hcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHH
Confidence 99999999999875 68899999998888888 45599999999998876433 3444444444333444 44555
Q ss_pred HHHHHHHHH
Q 043311 217 RGLLQQMKA 225 (257)
Q Consensus 217 ~~~~~~m~~ 225 (257)
.+.+..+..
T Consensus 262 ~r~l~QLk~ 270 (299)
T KOG3081|consen 262 ERNLSQLKL 270 (299)
T ss_pred HHHHHHHHh
Confidence 566666554
No 90
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.60 E-value=0.00094 Score=54.19 Aligned_cols=126 Identities=14% Similarity=0.151 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHH
Q 043311 122 VVAHTAVIEAYASAGQGKEALRVFMRMLASG-VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTY 200 (257)
Q Consensus 122 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 200 (257)
+.+|-.+|+..-+.+.++.|..+|.+.++.+ +...++...+.|..++. +..+.|.++|+...+. +.-+...|
T Consensus 1 t~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~------~d~~~A~~Ife~glk~-f~~~~~~~ 73 (280)
T PF05843_consen 1 TLVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCN------KDPKRARKIFERGLKK-FPSDPDFW 73 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTC------S-HHHHHHHHHHHHHH-HTT-HHHH
T ss_pred CHHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC------CCHHHHHHHHHHHHHH-CCCCHHHH
Confidence 3578899999999999999999999998653 45566666666664432 2267799999988764 56678889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHhhcCCchhhHHhhhc
Q 043311 201 TAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE----KAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 201 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
..-++-+.+.|+.+.|..+|++.... .|.. ..|...+.-=.+.|+.+.+.++..
T Consensus 74 ~~Y~~~l~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~ 131 (280)
T PF05843_consen 74 LEYLDFLIKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEK 131 (280)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999866 3343 489999999999999988888764
No 91
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.58 E-value=0.008 Score=50.36 Aligned_cols=181 Identities=13% Similarity=-0.003 Sum_probs=113.7
Q ss_pred cCCCCHHHHHHHHHHHHhCC-CCCcHH--HHH--HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cC
Q 043311 66 EEPTDPRNLQEIFHKMRTEG-LTNNAV--KMF--DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS----AG 136 (257)
Q Consensus 66 ~~~~~~~~a~~~~~~m~~~~-~~p~~~--~ll--~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~ 136 (257)
...|+++.+.+.+....+.. ..++.. ..+ ..+...|++++|.++++...+.. +.|...+.. ...+.. .+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~ 94 (355)
T cd05804 17 LLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSG 94 (355)
T ss_pred HhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhccccc
Confidence 34456666555555554422 122322 222 34567899999999999887752 223344442 223333 34
Q ss_pred ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 043311 137 QGKEALRVFMRMLASGVAPNA-YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215 (257)
Q Consensus 137 ~~~~a~~~~~~m~~~g~~~~~-~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 215 (257)
....+.+.+.. .....|+. .....+-..+.. .|++++|...++...+.. +.+...+..+-..+...|++++
T Consensus 95 ~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~-----~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~e 166 (355)
T cd05804 95 MRDHVARVLPL--WAPENPDYWYLLGMLAFGLEE-----AGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKE 166 (355)
T ss_pred CchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHH
Confidence 45555555544 12233333 344455556667 455999999999988752 3345667788888999999999
Q ss_pred HHHHHHHHHHCCC-CCCH--HHHHHHHHHhhcCCchhhHHhhhc
Q 043311 216 ARGLLQQMKAKGF-VPDE--KAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 216 a~~~~~~m~~~g~-~p~~--~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
|..++++.....- .|+. ..+..+...+...|+.+.|..+|+
T Consensus 167 A~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~ 210 (355)
T cd05804 167 GIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYD 210 (355)
T ss_pred HHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999887532 2333 234467778999999999998876
No 92
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.54 E-value=0.026 Score=44.27 Aligned_cols=168 Identities=16% Similarity=0.137 Sum_probs=107.5
Q ss_pred CCCHHHHHHHHHHHHh---CC-CCCcHHH----HHHHHHhcCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcC
Q 043311 68 PTDPRNLQEIFHKMRT---EG-LTNNAVK----MFDALSKDGLTHEALQLFAQIKDKGHMPDV---VAHTAVIEAYASAG 136 (257)
Q Consensus 68 ~~~~~~a~~~~~~m~~---~~-~~p~~~~----ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~~~ 136 (257)
..+.+++.+++.++.. .| ..++..+ ++.+..-.|+.+.|..+++.+...- |.. .-..+|+ +-..|
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~--lEa~~ 100 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAML--LEATG 100 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHH--HHHhh
Confidence 4577888888888875 45 5666664 5556667888888999998887752 332 2222221 34568
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 043311 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216 (257)
Q Consensus 137 ~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 216 (257)
++++|.++++.+.+.+ +.|..+|--=+-..-.. |.--+|.+-+.+..+. +.-|...|--+-+.|...|++.+|
T Consensus 101 ~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~-----GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA 173 (289)
T KOG3060|consen 101 NYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQ-----GKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKA 173 (289)
T ss_pred chhhHHHHHHHHhccC-cchhHHHHHHHHHHHHc-----CCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHH
Confidence 8899999999988776 55666665333333221 1133444444444432 566889999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhhcCCc
Q 043311 217 RGLLQQMKAKGFVPDEKAVKEALIDKRGQGF 247 (257)
Q Consensus 217 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 247 (257)
.-+++++.-.. +.+..-|..+-..+.-.|.
T Consensus 174 ~fClEE~ll~~-P~n~l~f~rlae~~Yt~gg 203 (289)
T KOG3060|consen 174 AFCLEELLLIQ-PFNPLYFQRLAEVLYTQGG 203 (289)
T ss_pred HHHHHHHHHcC-CCcHHHHHHHHHHHHHHhh
Confidence 99999987642 2244444444444433333
No 93
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.50 E-value=0.0077 Score=51.36 Aligned_cols=185 Identities=13% Similarity=0.039 Sum_probs=124.1
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCC-CCcHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGL-TNNAV-KMFDALSKDGLTHEALQLFAQIKDKGHMP-DVVAHTAVIEAYASAGQGK 139 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~-~ll~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~ 139 (257)
.+|....+.++..+.|+...+.+- .|+.. +=-..+.-.+++++|..=|+.-..- .| ++..|--+-.+.-+.+.++
T Consensus 368 ~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~ 445 (606)
T KOG0547|consen 368 AAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DPENAYAYIQLCCALYRQHKIA 445 (606)
T ss_pred HHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--ChhhhHHHHHHHHHHHHHHHHH
Confidence 778888888888888888887443 34432 2222223345667777777766653 33 3344555555556677889
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhC-----CC--CCCHHHHHHHHHHHHHcCC
Q 043311 140 EALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK-----GM--RPNAGTYTAVFEAFVRAQK 212 (257)
Q Consensus 140 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~-----g~--~p~~~~~~~li~~~~~~~~ 212 (257)
+++..|++.++. .+--..+|+..-..+.. .++++.|.+.|+...+. ++ .+....--+++..-.+ ++
T Consensus 446 ~~m~~Fee~kkk-FP~~~Evy~~fAeiLtD-----qqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk-~d 518 (606)
T KOG0547|consen 446 ESMKTFEEAKKK-FPNCPEVYNLFAEILTD-----QQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK-ED 518 (606)
T ss_pred HHHHHHHHHHHh-CCCCchHHHHHHHHHhh-----HHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchh-hh
Confidence 999999988876 56677888888888888 55599999988876542 11 1112222333333344 78
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 213 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
+..|..+++...+..-+ ....|..|-..-...|+.++|..+|+|
T Consensus 519 ~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEk 562 (606)
T KOG0547|consen 519 INQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEK 562 (606)
T ss_pred HHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 88899998888775433 346788888888889999999999875
No 94
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.48 E-value=0.0074 Score=38.90 Aligned_cols=94 Identities=19% Similarity=0.136 Sum_probs=52.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043311 125 HTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVF 204 (257)
Q Consensus 125 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 204 (257)
|..+...+...|++++|..+|++..+.. +.+...+..+...+.. .+.++.|.+.|+...... +.+..++..+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 75 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYK-----LGKYEEALEDYEKALELD-PDNAKAYYNLG 75 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhCC-CcchhHHHHHH
Confidence 3444555566666666666666665542 2233455555555555 333666666666655432 22334555666
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 043311 205 EAFVRAQKVDEARGLLQQMKA 225 (257)
Q Consensus 205 ~~~~~~~~~~~a~~~~~~m~~ 225 (257)
..+...|+.+.|...+.+..+
T Consensus 76 ~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 76 LAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHhHHHHHHHHHHHHc
Confidence 666666777777766666543
No 95
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=0.046 Score=46.50 Aligned_cols=197 Identities=13% Similarity=0.042 Sum_probs=147.2
Q ss_pred cCCCCCCccccccccccCCCCHHHHHHHHHHHHhCCCCCc-HHHHH-HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 043311 50 KSKLPPPYDPFKKVVDEEPTDPRNLQEIFHKMRTEGLTNN-AVKMF-DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127 (257)
Q Consensus 50 ~~~~~p~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~ll-~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 127 (257)
-....|........-++-.++.+.|...|++..+.+-.-. .+||| --|...++...|.+-|+...+-. +.|-..|-.
T Consensus 325 idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYG 403 (559)
T KOG1155|consen 325 IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYG 403 (559)
T ss_pred hccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhh
Confidence 3455666555555677778899999999999998653332 33544 46888899999999999887731 347789999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043311 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAF 207 (257)
Q Consensus 128 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 207 (257)
|=++|.-.+...=|+-.|++-.+- .+-|.+.|.+|=+.|.+ -++.++|.+.|......|-. +...|..|-+.|
T Consensus 404 LGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~k-----l~~~~eAiKCykrai~~~dt-e~~~l~~LakLy 476 (559)
T KOG1155|consen 404 LGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEK-----LNRLEEAIKCYKRAILLGDT-EGSALVRLAKLY 476 (559)
T ss_pred hhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHH-----hccHHHHHHHHHHHHhcccc-chHHHHHHHHHH
Confidence 999999999999999999998875 35588999999999999 44499999999988765422 557889999999
Q ss_pred HHcCCHHHHHHHHHHHHH----CCCCCCHHHHHH--HHHHhhcCCchhhHHhh
Q 043311 208 VRAQKVDEARGLLQQMKA----KGFVPDEKAVKE--ALIDKRGQGFRGVINIL 254 (257)
Q Consensus 208 ~~~~~~~~a~~~~~~m~~----~g~~p~~~t~~~--ll~~~~~~g~~~~~~~l 254 (257)
-+.++..+|...|+.-.+ .|..-+...... |-.-+.+.++++.|..+
T Consensus 477 e~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Y 529 (559)
T KOG1155|consen 477 EELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYY 529 (559)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 999999999888776654 354433222222 33346777888777654
No 96
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.47 E-value=0.019 Score=48.99 Aligned_cols=148 Identities=14% Similarity=0.127 Sum_probs=66.3
Q ss_pred CCCCHHHHHHHHHHHHhCCCC--CcHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChHHHHH
Q 043311 67 EPTDPRNLQEIFHKMRTEGLT--NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDV-VAHTAVIEAYASAGQGKEALR 143 (257)
Q Consensus 67 ~~~~~~~a~~~~~~m~~~~~~--p~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~~~~~~a~~ 143 (257)
+.++++.|.++|+........ |-+...+.+=.+...++.|..+|+....- -|-+ ..|---+.+=-..|++..|.+
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHH
Confidence 455666666666666653321 11112333334444555555555544331 2222 233333444444445555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043311 144 VFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223 (257)
Q Consensus 144 ~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 223 (257)
+|+.-.+ -.|+...|++.|+-=.+ -..++.|.++++...- +.|+..+|--...-=-++|....+..+|++.
T Consensus 163 iferW~~--w~P~eqaW~sfI~fElR-----ykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerA 233 (677)
T KOG1915|consen 163 IFERWME--WEPDEQAWLSFIKFELR-----YKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERA 233 (677)
T ss_pred HHHHHHc--CCCcHHHHHHHHHHHHH-----hhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 5544332 34555555555544444 2224455555544442 1244444444444444444444444444444
Q ss_pred HH
Q 043311 224 KA 225 (257)
Q Consensus 224 ~~ 225 (257)
.+
T Consensus 234 ie 235 (677)
T KOG1915|consen 234 IE 235 (677)
T ss_pred HH
Confidence 43
No 97
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.47 E-value=0.0077 Score=52.92 Aligned_cols=216 Identities=12% Similarity=-0.039 Sum_probs=107.9
Q ss_pred cchhhhhhhhcccCCCCccchhhcccCCCCCCccccccccccCCCCHHHHHHHHHHHHhCCCCCc-HHHHH-HHHHhcCC
Q 043311 25 TRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKKVVDEEPTDPRNLQEIFHKMRTEGLTNN-AVKMF-DALSKDGL 102 (257)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~ll-~~~~~~~~ 102 (257)
..|++.+...-..-...-+.+-+.+..+..|..=......+.-.++.+.|++.|++..+.+-.-. +.||+ --+.....
T Consensus 391 eiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee 470 (638)
T KOG1126|consen 391 EIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEE 470 (638)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHH
Confidence 34455554432222222222224444445554322222556667788888888888777432111 11221 11222334
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHH---HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHH
Q 043311 103 THEALQLFAQIKDKGHMPDVVAHTAV---IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179 (257)
Q Consensus 103 ~~~a~~~~~~m~~~g~~p~~~~~~~l---i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~ 179 (257)
+|.|...|+.... .|+..||++ --.|.|.++.+.|+--|+.-.+-+ +-|.+....+...+.+ .|..+
T Consensus 471 ~d~a~~~fr~Al~----~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~-----~k~~d 540 (638)
T KOG1126|consen 471 FDKAMKSFRKALG----VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQ-----LKRKD 540 (638)
T ss_pred HHhHHHHHHhhhc----CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHH-----hhhhh
Confidence 4555555554333 455555553 344667777777777776665532 2233444444444555 33367
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHhhcCCchhhHHh
Q 043311 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA-VKEALIDKRGQGFRGVINI 253 (257)
Q Consensus 180 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~~~~ 253 (257)
+|+.++++..-..-+ |...----...+...++.++|+..++++.. +.|+..+ |..+-..|.+.|..+.|..
T Consensus 541 ~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~ 612 (638)
T KOG1126|consen 541 KALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALL 612 (638)
T ss_pred HHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHH
Confidence 777777665533211 221111123344556677777777777665 3454433 3333345666666665543
No 98
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=97.47 E-value=0.0014 Score=51.89 Aligned_cols=101 Identities=14% Similarity=0.111 Sum_probs=70.2
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhH
Q 043311 99 KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKIL 178 (257)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~ 178 (257)
+.++++-..-.++.|.+.|+.-|..+|+.||..+-+..- . ....|..+.-+|-+ +-
T Consensus 84 ~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------i-P~nvfQ~~F~HYP~-------QQ 139 (406)
T KOG3941|consen 84 GRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------I-PQNVFQKVFLHYPQ-------QQ 139 (406)
T ss_pred ccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------c-cHHHHHHHHhhCch-------hh
Confidence 457888888999999999999999999999988766542 2 22233334444444 14
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHH
Q 043311 179 GDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV-DEARGLLQQM 223 (257)
Q Consensus 179 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~-~~a~~~~~~m 223 (257)
+.+..++++|+.+|+.||..+-..|+.++.+.+-. .+..++.--|
T Consensus 140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 56777888888888888888888888888776642 3333443333
No 99
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.47 E-value=0.044 Score=46.77 Aligned_cols=105 Identities=13% Similarity=0.156 Sum_probs=52.9
Q ss_pred ccCCCCHHHHHHHHHHHHhCCC-CCcHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHH
Q 043311 65 DEEPTDPRNLQEIFHKMRTEGL-TNNAV-KMFDALSKDGLTHEALQLFAQIKDKGHMPD-VVAHTAVIEAYASAGQGKEA 141 (257)
Q Consensus 65 ~~~~~~~~~a~~~~~~m~~~~~-~p~~~-~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a 141 (257)
.-..|+++.|...++.+....- .|... .....+.+.++..+|.+.|+.+... .|+ ...+-.+=.+|.+.|+..+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHH
Confidence 3345555555555555444211 11111 2444555556666666665555543 333 33444445555555666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhccC
Q 043311 142 LRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 142 ~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~ 172 (257)
..+++..... .+-|...|..|-++|...|+
T Consensus 394 i~~L~~~~~~-~p~dp~~w~~LAqay~~~g~ 423 (484)
T COG4783 394 IRILNRYLFN-DPEDPNGWDLLAQAYAELGN 423 (484)
T ss_pred HHHHHHHhhc-CCCCchHHHHHHHHHHHhCc
Confidence 6555555544 24455566666666655444
No 100
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.46 E-value=0.0091 Score=50.62 Aligned_cols=121 Identities=11% Similarity=0.028 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHH
Q 043311 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTA 202 (257)
Q Consensus 123 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 202 (257)
..-.+|+..+...++++.|.++|+++.+.. |+ ....+.+.+... +...+|.+++++.... .+-+....+.
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~-----~~E~~AI~ll~~aL~~-~p~d~~LL~~ 239 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLM-----NEEVEAIRLLNEALKE-NPQDSELLNL 239 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhc-----CcHHHHHHHHHHHHHh-CCCCHHHHHH
Confidence 345567777888899999999999999764 55 444577777763 3367888888887753 2335666666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhcCCchhhHHhhh
Q 043311 203 VFEAFVRAQKVDEARGLLQQMKAKGFVPDEK-AVKEALIDKRGQGFRGVINILF 255 (257)
Q Consensus 203 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~~~~l~ 255 (257)
-.+-+.+.++.+.|..+.+++.+. .|+.. +|..|..+|...|+++.|....
T Consensus 240 Qa~fLl~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaL 291 (395)
T PF09295_consen 240 QAEFLLSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLAL 291 (395)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 677788999999999999999874 56555 9999999999999999986543
No 101
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.46 E-value=0.0034 Score=56.88 Aligned_cols=230 Identities=10% Similarity=0.008 Sum_probs=143.4
Q ss_pred chhhhhhhhcccCCCCccchhhcccCCCCCCcccccc---ccccCCCCHHHHHHHHHHHHhCCCCCcHH-------HHHH
Q 043311 26 RVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKK---VVDEEPTDPRNLQEIFHKMRTEGLTNNAV-------KMFD 95 (257)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~---~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-------~ll~ 95 (257)
.|..+...+...+++..+.-...+.-...|+-..+.. .+|-+.|+...|..-|.++.+..-..+.. .++.
T Consensus 209 ~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~ 288 (895)
T KOG2076|consen 209 LWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAH 288 (895)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHH
Confidence 3444445555555555555555555555666555555 78889999999999999999864422221 2566
Q ss_pred HHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH--------------
Q 043311 96 ALSKDGLTHEALQLFAQIKDK-GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY-------------- 160 (257)
Q Consensus 96 ~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~-------------- 160 (257)
.+...++.+.|.+.++..... +-.-+...++++...|.+...++.|......+.....++|..-|
T Consensus 289 ~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~ 368 (895)
T KOG2076|consen 289 YFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALC 368 (895)
T ss_pred HHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccc
Confidence 677777778888887766552 33456677889999999999999999998888873233333222
Q ss_pred --------HHH-HHHHHhccCCcchhHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 043311 161 --------AVL-IKGLAAAADGNAKILGDAQKYLMEMVGKGM--RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFV 229 (257)
Q Consensus 161 --------~~l-l~~~~~~~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 229 (257)
..= ++.+...-..+. .+....+...+.+..+ .-+...|.-+.+++...|+++.|+++|..+.+....
T Consensus 369 ~~~~~~s~~l~v~rl~icL~~L~~--~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~ 446 (895)
T KOG2076|consen 369 EVGKELSYDLRVIRLMICLVHLKE--RELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGY 446 (895)
T ss_pred cCCCCCCccchhHhHhhhhhcccc--cchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccc
Confidence 110 111111111111 2222223333333332 224456777777888888888888888888776444
Q ss_pred CCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 230 PDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 230 p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
-+...|.-+-..|...|..+.|...|+|
T Consensus 447 ~~~~vw~~~a~c~~~l~e~e~A~e~y~k 474 (895)
T KOG2076|consen 447 QNAFVWYKLARCYMELGEYEEAIEFYEK 474 (895)
T ss_pred cchhhhHHHHHHHHHHhhHHHHHHHHHH
Confidence 4567777777777777887777777654
No 102
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.41 E-value=0.051 Score=44.51 Aligned_cols=149 Identities=16% Similarity=0.021 Sum_probs=109.0
Q ss_pred CCCHHHHHHHHHHHHhC-CCCCcHH-----HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 043311 68 PTDPRNLQEIFHKMRTE-GLTNNAV-----KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEA 141 (257)
Q Consensus 68 ~~~~~~a~~~~~~m~~~-~~~p~~~-----~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 141 (257)
.+..+.+..-+..+... ...|... .+-..|.+.|++++|...|++..+.. +.+...|+.+=..+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 36777788888777753 3344431 24456788999999999999988853 23568899999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 043311 142 LRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221 (257)
Q Consensus 142 ~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 221 (257)
...|+...+.. +-+..+|..+-..+.. .|++++|.+.|+...+. .|+..........+...++.++|...|.
T Consensus 118 ~~~~~~Al~l~-P~~~~a~~~lg~~l~~-----~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~ 189 (296)
T PRK11189 118 YEAFDSVLELD-PTYNYAYLNRGIALYY-----GGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLK 189 (296)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHH
Confidence 99999998753 2246777777777877 55599999999998764 4544322222333445678999999997
Q ss_pred HHHH
Q 043311 222 QMKA 225 (257)
Q Consensus 222 ~m~~ 225 (257)
+...
T Consensus 190 ~~~~ 193 (296)
T PRK11189 190 QRYE 193 (296)
T ss_pred HHHh
Confidence 7653
No 103
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.39 E-value=0.0057 Score=43.16 Aligned_cols=54 Identities=13% Similarity=0.031 Sum_probs=43.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHhhc
Q 043311 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK-GFVPDEKAVKEALIDKRG 244 (257)
Q Consensus 191 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~~~~ 244 (257)
....|+..+..+++.+|+..|++..|.++++...+. ++..+..+|..|+.-+..
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 346788888888888888888888888888888877 888888888888885443
No 104
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.38 E-value=0.015 Score=42.09 Aligned_cols=117 Identities=18% Similarity=0.141 Sum_probs=62.3
Q ss_pred hcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhccCCc
Q 043311 99 KDGLTHEALQLFAQIKDKGHMP--DVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA--YTYAVLIKGLAAAADGN 174 (257)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~--~t~~~ll~~~~~~~~~~ 174 (257)
..++...+...++.+.+..-.- .....-.+-..+...|++++|...|+........++. .....+...+..
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~----- 97 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQ----- 97 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH-----
Confidence 3666666766677666642111 0112222335566677777777777777765422221 122233444555
Q ss_pred chhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043311 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222 (257)
Q Consensus 175 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 222 (257)
.|.+++|...++......+ ....+...=+.|.+.|+.++|...|+.
T Consensus 98 ~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 98 QGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred cCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3447777777755433222 223344455666777777777777664
No 105
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.38 E-value=0.024 Score=40.25 Aligned_cols=102 Identities=17% Similarity=0.107 Sum_probs=76.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~ 172 (257)
+...+.+.|+.++|.+.|+...+.+ +.+...|..+-..+.+.|++++|..+|+...+.+ +.+..+|..+-..+...|+
T Consensus 23 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~ 100 (135)
T TIGR02552 23 LAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGE 100 (135)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCC
Confidence 5667788899999999998887753 3366788888888888999999999998877664 4456677677777777444
Q ss_pred CcchhHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 043311 173 GNAKILGDAQKYLMEMVGKGMRPNAGTYTAV 203 (257)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 203 (257)
++.|...|+...+. .|+...+..+
T Consensus 101 -----~~~A~~~~~~al~~--~p~~~~~~~~ 124 (135)
T TIGR02552 101 -----PESALKALDLAIEI--CGENPEYSEL 124 (135)
T ss_pred -----HHHHHHHHHHHHHh--ccccchHHHH
Confidence 99999999887764 4555554433
No 106
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.38 E-value=0.022 Score=41.25 Aligned_cols=115 Identities=13% Similarity=0.021 Sum_probs=85.1
Q ss_pred HHHHHHHhCCCCCcHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 043311 76 EIFHKMRTEGLTNNAV-KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154 (257)
Q Consensus 76 ~~~~~m~~~~~~p~~~-~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 154 (257)
.+|++..+. .|+.. ..-..+.+.|++++|...|....... +.+...|..+-.++.+.|++++|...|+.....+ +
T Consensus 14 ~~~~~al~~--~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p 89 (144)
T PRK15359 14 DILKQLLSV--DPETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-A 89 (144)
T ss_pred HHHHHHHHc--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-C
Confidence 344444443 23322 35667788999999999999987752 3367788888899999999999999999998763 4
Q ss_pred CCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHH
Q 043311 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYT 201 (257)
Q Consensus 155 ~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 201 (257)
.+...+..+-.++... |+.++|...|+..... .|+..-|.
T Consensus 90 ~~~~a~~~lg~~l~~~-----g~~~eAi~~~~~Al~~--~p~~~~~~ 129 (144)
T PRK15359 90 SHPEPVYQTGVCLKMM-----GEPGLAREAFQTAIKM--SYADASWS 129 (144)
T ss_pred CCcHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHh--CCCChHHH
Confidence 5778888888888884 4499999999988763 46554443
No 107
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.35 E-value=0.019 Score=41.66 Aligned_cols=128 Identities=16% Similarity=0.066 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCH--
Q 043311 122 VVAHTAVIEAYASAGQGKEALRVFMRMLASGVA--PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA-- 197 (257)
Q Consensus 122 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-- 197 (257)
...|..++..+. .++...+...++.+.+..-. ......-.+-..+.. .|.+++|...|+........|+.
T Consensus 12 ~~~y~~~~~~~~-~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~-----~g~~~~A~~~l~~~~~~~~d~~l~~ 85 (145)
T PF09976_consen 12 SALYEQALQALQ-AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYE-----QGDYDEAKAALEKALANAPDPELKP 85 (145)
T ss_pred HHHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHhhCCCHHHHH
Confidence 345666777664 88899999999999976322 112333334456666 45599999999999986522322
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 198 GTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 198 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
...--|-..+...|++++|...++....... ....+...=..+.+.|+.+.|...|++
T Consensus 86 ~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 86 LARLRLARILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 2334466788899999999999977443332 344555566679999999999998864
No 108
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.30 E-value=0.017 Score=49.31 Aligned_cols=147 Identities=11% Similarity=0.104 Sum_probs=116.9
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhH
Q 043311 99 KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKIL 178 (257)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~ 178 (257)
..+++..|..+|+...... ..++..|---+.+=.+++.+..|..+|+.-...--..|. .|--.+-.=-..|+ +
T Consensus 85 sq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~ymEE~LgN-----i 157 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIYMEEMLGN-----I 157 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHHHHHHhcc-----c
Confidence 3567788999999887753 457778888888889999999999999998764222233 23233333334333 9
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 179 GDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 179 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
..|.++|+.-.+ ..|+...|++.|.-=.+.+.++.|..+|++..- +.|+..+|.-...--.++|+++.+..+|+
T Consensus 158 ~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~Vye 231 (677)
T KOG1915|consen 158 AGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYE 231 (677)
T ss_pred HHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 999999998765 689999999999999999999999999999876 46999999888888888999988888875
No 109
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.25 E-value=0.054 Score=41.54 Aligned_cols=131 Identities=15% Similarity=0.098 Sum_probs=95.3
Q ss_pred CCCCHHHHHHHHHHHHhCC-CCCcHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCC--hHHH
Q 043311 67 EPTDPRNLQEIFHKMRTEG-LTNNAV-KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA-YASAGQ--GKEA 141 (257)
Q Consensus 67 ~~~~~~~a~~~~~~m~~~~-~~p~~~-~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-~~~~~~--~~~a 141 (257)
..++.+++...++...+.. -.+... .+-..|...|++++|...|+...+.. .-+...+..+-.+ +...|+ .++|
T Consensus 51 ~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred CchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 3677788888887766643 222222 46778899999999999999988853 2256677776665 467777 5999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043311 142 LRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEA 206 (257)
Q Consensus 142 ~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 206 (257)
.+++++..+.+ +-+...+..+-..+...|+ +++|...|+.+.+. .+|+..-+..+ ++
T Consensus 130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~-----~~~Ai~~~~~aL~l-~~~~~~r~~~i-~~ 186 (198)
T PRK10370 130 REMIDKALALD-ANEVTALMLLASDAFMQAD-----YAQAIELWQKVLDL-NSPRVNRTQLV-ES 186 (198)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHcCC-----HHHHHHHHHHHHhh-CCCCccHHHHH-HH
Confidence 99999999874 3377888888888888555 99999999999875 35555544433 54
No 110
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.16 E-value=0.071 Score=49.25 Aligned_cols=200 Identities=11% Similarity=0.007 Sum_probs=139.4
Q ss_pred CCCCCCccccccccccCCCCHHHHHHHHHHHHhCCCCCc-----HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--H
Q 043311 51 SKLPPPYDPFKKVVDEEPTDPRNLQEIFHKMRTEGLTNN-----AVKMFDALSKDGLTHEALQLFAQIKDKGHMPDV--V 123 (257)
Q Consensus 51 ~~~~p~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~ 123 (257)
.+-.|...+.....+-..|+++.|..+...+........ ..-+-++|-..|+++.|...|.+-.+. .+|- .
T Consensus 266 n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l 343 (1018)
T KOG2002|consen 266 NNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVL 343 (1018)
T ss_pred cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccc
Confidence 344555555555777788999999999999887542211 124788999999999999998877664 3443 4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 043311 124 AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAV 203 (257)
Q Consensus 124 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 203 (257)
.+--+-..|.+.|+++.+...|+..... .+-+..|.-++=..|+..+. .....+.|..++...... .+-|...|-.+
T Consensus 344 ~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~-~~~~~d~a~~~l~K~~~~-~~~d~~a~l~l 420 (1018)
T KOG2002|consen 344 PLVGLGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAK-KQEKRDKASNVLGKVLEQ-TPVDSEAWLEL 420 (1018)
T ss_pred cccchhHHHHHhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhh-hhHHHHHHHHHHHHHHhc-ccccHHHHHHH
Confidence 4556788999999999999999999876 24455666666666665321 022346666666665543 23466677666
Q ss_pred HHHHHHcCCHHHHHHHHHHH----HHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 204 FEAFVRAQKVDEARGLLQQM----KAKGFVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 204 i~~~~~~~~~~~a~~~~~~m----~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
-..+-..+ ...++.+|... ...|-.+-....+.+-......|+.++|...|+
T Consensus 421 aql~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~ 476 (1018)
T KOG2002|consen 421 AQLLEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFK 476 (1018)
T ss_pred HHHHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHH
Confidence 66665554 44446665544 456666888999999999999999999988875
No 111
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.14 E-value=0.09 Score=44.97 Aligned_cols=124 Identities=17% Similarity=0.079 Sum_probs=95.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcc
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN-AYTYAVLIKGLAAAA 171 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~t~~~ll~~~~~~~ 171 (257)
.-..+...|..++|+..++.+.+. .+-|+..+......+.+.++.++|.+.++.+... .|+ ....-.+-+++.+
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~-- 386 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLK-- 386 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHh--
Confidence 444556788999999999998875 3345667777788899999999999999999875 566 5666677788888
Q ss_pred CCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043311 172 DGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225 (257)
Q Consensus 172 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 225 (257)
.|...++..+++..... .+-|...|..|-++|...|+..++.....++..
T Consensus 387 ---~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 387 ---GGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred ---cCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 44488999999888754 455788999999998888777666666555543
No 112
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.10 E-value=0.078 Score=45.50 Aligned_cols=182 Identities=17% Similarity=0.099 Sum_probs=125.3
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCcH--HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 043311 67 EPTDPRNLQEIFHKMRTEGLTNNA--VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRV 144 (257)
Q Consensus 67 ~~~~~~~a~~~~~~m~~~~~~p~~--~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~ 144 (257)
-.|+.-.+..-|+......-.++. ..+-..|....+.++.+..|.....-.. -|..+|.--=..+.-.+++++|..=
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHHHHH
Confidence 356777777777777775544443 2456678888888999999998876421 2445666666667777889999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043311 145 FMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224 (257)
Q Consensus 145 ~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 224 (257)
|++-.+-. +-++..|.-+.-+.-+ .+.+++++..|++.... ++--...||..-..+...++++.|.+.|+...
T Consensus 417 F~Kai~L~-pe~~~~~iQl~~a~Yr-----~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 417 FQKAISLD-PENAYAYIQLCCALYR-----QHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHhhcC-hhhhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 99887642 2244555555555555 56699999999998875 56567889999999999999999999999987
Q ss_pred HC-----CCCCCHH--HHHHHHHHhhcCCchhhHHhhhcC
Q 043311 225 AK-----GFVPDEK--AVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 225 ~~-----g~~p~~~--t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
+. ++..+.. ....++..=.+ ++...+++|+.|
T Consensus 490 ~LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~K 528 (606)
T KOG0547|consen 490 ELEPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRK 528 (606)
T ss_pred hhccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHH
Confidence 53 2222322 22333333233 777777777654
No 113
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.10 E-value=0.023 Score=36.45 Aligned_cols=91 Identities=20% Similarity=0.130 Sum_probs=67.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~ 172 (257)
+...+...|++++|..+|....+.. ..+...+..+-..+...+++++|.+.|+...+.+ +.+..++..+...+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~--- 80 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK--- 80 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH---
Confidence 4556777889999999998887652 2234677778888888899999999998887754 3344677777777777
Q ss_pred CcchhHHHHHHHHHHHHh
Q 043311 173 GNAKILGDAQKYLMEMVG 190 (257)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~ 190 (257)
.|..+.|...+.....
T Consensus 81 --~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 --LGKYEEALEAYEKALE 96 (100)
T ss_pred --HHhHHHHHHHHHHHHc
Confidence 4448888888877654
No 114
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.09 E-value=0.045 Score=37.57 Aligned_cols=97 Identities=16% Similarity=0.075 Sum_probs=49.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCC--CCCCHHHH
Q 043311 125 HTAVIEAYASAGQGKEALRVFMRMLASGV--APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG--MRPNAGTY 200 (257)
Q Consensus 125 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~~~ 200 (257)
+-.+...+.+.|++++|...|..+.+..- ......+..+...+.+ .|+++.|...|+.+.... -......+
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 79 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYA-----QGKYADAAKAFLAVVKKYPKSPKAPDAL 79 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHh-----hccHHHHHHHHHHHHHHCCCCCcccHHH
Confidence 34444555556666666666666654311 1112344445555555 333666666666655321 01112344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 043311 201 TAVFEAFVRAQKVDEARGLLQQMKAK 226 (257)
Q Consensus 201 ~~li~~~~~~~~~~~a~~~~~~m~~~ 226 (257)
..+-..+.+.|+.++|...++++.+.
T Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 80 LKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 44555556666666666666666654
No 115
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.08 E-value=0.13 Score=47.24 Aligned_cols=166 Identities=10% Similarity=0.068 Sum_probs=106.9
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHH----HHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCC
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAV----KMFDALSKDGLTHEALQLFAQIKDKGHMPDV-VAHTAVIEAYASAGQ 137 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~~~ 137 (257)
.+..+.|.+++|..+|+...+. .|+.. .+...+.+.+++++|+..++..... .|+. ...+.+=.++.+.|+
T Consensus 94 ~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~~l~~~g~ 169 (694)
T PRK15179 94 RALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAKSWDEIGQ 169 (694)
T ss_pred HHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHhcc
Confidence 5666788888888888888774 55543 4777888888888888888887775 3543 445555566777888
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 043311 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217 (257)
Q Consensus 138 ~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 217 (257)
+++|..+|++....+ .-+..++..+-..+...|+ .++|...|+...+. ..|...-|+-.+. ++..-.
T Consensus 170 ~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~-----~~~A~~~~~~a~~~-~~~~~~~~~~~~~------~~~~~~ 236 (694)
T PRK15179 170 SEQADACFERLSRQH-PEFENGYVGWAQSLTRRGA-----LWRARDVLQAGLDA-IGDGARKLTRRLV------DLNADL 236 (694)
T ss_pred hHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHh-hCcchHHHHHHHH------HHHHHH
Confidence 888888888888732 3346777777777777444 88888888877643 2344455554433 455556
Q ss_pred HHHHHHHHCC----CCCCHHHHHHHHHHhhcC
Q 043311 218 GLLQQMKAKG----FVPDEKAVKEALIDKRGQ 245 (257)
Q Consensus 218 ~~~~~m~~~g----~~p~~~t~~~ll~~~~~~ 245 (257)
.+++++.-.+ ...........|.-+.+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 237 AALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 6666665443 233333444444444433
No 116
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=97.05 E-value=0.075 Score=43.46 Aligned_cols=155 Identities=14% Similarity=0.297 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHhc---------CChHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCC-
Q 043311 71 PRNLQEIFHKMRTEGLTNNAVKMFDALSKD---------GLTHEALQLFAQIKDKG---HMPDVVAHTAVIEAYASAGQ- 137 (257)
Q Consensus 71 ~~~a~~~~~~m~~~~~~p~~~~ll~~~~~~---------~~~~~a~~~~~~m~~~g---~~p~~~~~~~li~~~~~~~~- 137 (257)
++.+.++++.|.+.|..-+..+.+.++.-. .....+..+|+.|+++. ..++..++..||.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 455678899999999988876655544322 23567899999999873 25677788888766 3333
Q ss_pred ---hHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHHcCC
Q 043311 138 ---GKEALRVFMRMLASGVAPNAY-TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVF-EAFVRAQK 212 (257)
Q Consensus 138 ---~~~a~~~~~~m~~~g~~~~~~-t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li-~~~~~~~~ 212 (257)
.+.+..+|+.+.+.|...+.. -+.+-+-++....+ ......+.++++.+.+.|+++....|..+= -++...+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~--~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~ 233 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDD--QEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPE 233 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccc--hHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCch
Confidence 467788888888888765443 33333333332222 222778999999999999999888876552 22233333
Q ss_pred ---HHHHHHHHHHHHHC-CCC
Q 043311 213 ---VDEARGLLQQMKAK-GFV 229 (257)
Q Consensus 213 ---~~~a~~~~~~m~~~-g~~ 229 (257)
.+...++.+.+.+. |..
T Consensus 234 ~~~~~~i~ev~~~L~~~k~~~ 254 (297)
T PF13170_consen 234 EKIVEEIKEVIDELKEQKGFG 254 (297)
T ss_pred HHHHHHHHHHHHHHhhCcccC
Confidence 45666666666655 433
No 117
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.04 E-value=0.049 Score=37.39 Aligned_cols=95 Identities=19% Similarity=0.119 Sum_probs=58.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHH
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGH--MPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG--VAPNAYTYAVLIKGL 167 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~~~~~t~~~ll~~~ 167 (257)
.+...+.+.|++++|.+.|..+.+..- ......+..+-.++.+.|++++|...|+...... .......+..+...+
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 345566777777778777777765421 1113455567777777777888888887776542 111234555555666
Q ss_pred HhccCCcchhHHHHHHHHHHHHhC
Q 043311 168 AAAADGNAKILGDAQKYLMEMVGK 191 (257)
Q Consensus 168 ~~~~~~~~~~~~~a~~~~~~m~~~ 191 (257)
.+.+ ..+.|...++.+.+.
T Consensus 87 ~~~~-----~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 87 QELG-----DKEKAKATLQQVIKR 105 (119)
T ss_pred HHhC-----ChHHHHHHHHHHHHH
Confidence 6633 377777777777654
No 118
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=0.044 Score=44.15 Aligned_cols=178 Identities=12% Similarity=0.037 Sum_probs=113.8
Q ss_pred cCCCCccchhhcccCCCCCCcccccc--ccccCCCCHHHHHHHHHHHHh-CCCCCcHH-HHHHHHHhcCChHHHHHHHHH
Q 043311 37 SSSDQPTKKYVNTKSKLPPPYDPFKK--VVDEEPTDPRNLQEIFHKMRT-EGLTNNAV-KMFDALSKDGLTHEALQLFAQ 112 (257)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~p~~~~~~~--~~~~~~~~~~~a~~~~~~m~~-~~~~p~~~-~ll~~~~~~~~~~~a~~~~~~ 112 (257)
+++....+.+.+..++-. +.++.+. ...-+.|++++|.+-|....+ .|..|-.. .+--+-.+.|+.+.|+++.++
T Consensus 125 e~Dl~g~rsLveQlp~en-~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSE 203 (459)
T KOG4340|consen 125 EGDLPGSRSLVEQLPSEN-EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISE 203 (459)
T ss_pred cccCcchHHHHHhccCCC-ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHH
Confidence 344444444454444321 2222222 566789999999999998887 66777654 577777889999999999999
Q ss_pred HHhCCCC-------------CCHH--------HHHHHHH-------HHHhcCChHHHHHHHHHHH-HCCCCCCHHHHHHH
Q 043311 113 IKDKGHM-------------PDVV--------AHTAVIE-------AYASAGQGKEALRVFMRML-ASGVAPNAYTYAVL 163 (257)
Q Consensus 113 m~~~g~~-------------p~~~--------~~~~li~-------~~~~~~~~~~a~~~~~~m~-~~g~~~~~~t~~~l 163 (257)
+.++|++ ||+. .-..++. .+.+.|+.+.|.+-+.+|. +.--..|.+|...+
T Consensus 204 IieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~ 283 (459)
T KOG4340|consen 204 IIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQ 283 (459)
T ss_pred HHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHH
Confidence 9988753 2321 1223333 3456789999999999887 33356677777765
Q ss_pred HHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043311 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222 (257)
Q Consensus 164 l~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 222 (257)
.-.-... ++.+..+-++-+.+-. +-...||..++-.||++.-++.|-+++.+
T Consensus 284 Al~n~~~------~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 284 ALMNMDA------RPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHhcccC------CccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 4332221 1222233333333321 23567888888999999888888887765
No 119
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.01 E-value=0.0038 Score=38.63 Aligned_cols=63 Identities=25% Similarity=0.353 Sum_probs=39.7
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043311 98 SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL 163 (257)
Q Consensus 98 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~l 163 (257)
.+.|++++|.++|+...+.. +-+...+-.+..+|.+.|++++|..+++.+... .|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 45677777777777776542 125566667777777777777777777777654 4454444433
No 120
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.01 E-value=0.15 Score=44.38 Aligned_cols=148 Identities=14% Similarity=0.214 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHh-CCCCCcHH--HHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHH
Q 043311 71 PRNLQEIFHKMRT-EGLTNNAV--KMFDALSKDGLTHEALQLFAQIKDKGHMP-DVVAHTAVIEAYASAGQGKEALRVFM 146 (257)
Q Consensus 71 ~~~a~~~~~~m~~-~~~~p~~~--~ll~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~ 146 (257)
.+.....++.++. ....|+.. .+|+.-.+...+..|..+|.+.++.+..+ ++.+++++|.-|+. +|.+-|+.+|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 4445555555554 23344432 46777777888888999999999888888 78888888886664 55788899987
Q ss_pred H-HHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043311 147 R-MLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA--GTYTAVFEAFVRAQKVDEARGLLQQM 223 (257)
Q Consensus 147 ~-m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~m 223 (257)
- |++.| -+..--...+.-+...++ -..+..+|+.....++.||. ..|.-+|+-=...|++..+.++-+++
T Consensus 426 LGLkkf~--d~p~yv~~YldfL~~lNd-----d~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~ 498 (656)
T KOG1914|consen 426 LGLKKFG--DSPEYVLKYLDFLSHLND-----DNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRR 498 (656)
T ss_pred HHHHhcC--CChHHHHHHHHHHHHhCc-----chhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 6 44433 122222334444555444 66788888888877666655 57999998888889999998888887
Q ss_pred HHC
Q 043311 224 KAK 226 (257)
Q Consensus 224 ~~~ 226 (257)
...
T Consensus 499 ~~a 501 (656)
T KOG1914|consen 499 FTA 501 (656)
T ss_pred HHh
Confidence 643
No 121
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=96.96 E-value=0.13 Score=40.51 Aligned_cols=154 Identities=15% Similarity=0.035 Sum_probs=109.2
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHHH--HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAVK--MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 140 (257)
..+.-.|+-+....+............... ......+.|++..|..+|.+...- -++|...|+.+=-+|.+.|+.++
T Consensus 74 ~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~ 152 (257)
T COG5010 74 TALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDE 152 (257)
T ss_pred HHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhH
Confidence 444445555555555444333221211112 567778899999999999998774 45788999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 043311 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220 (257)
Q Consensus 141 a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 220 (257)
|..-|.+..+-... +...+|.+-=.+.-.|+ .+.|..++..-...+.. |...-..|...-...|++++|.++.
T Consensus 153 Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd-----~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 153 ARRAYRQALELAPN-EPSIANNLGMSLLLRGD-----LEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred HHHHHHHHHHhccC-CchhhhhHHHHHHHcCC-----HHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 99999998875322 34455555555555444 99999999988765432 5666677777888999999999987
Q ss_pred HHHH
Q 043311 221 QQMK 224 (257)
Q Consensus 221 ~~m~ 224 (257)
..-.
T Consensus 226 ~~e~ 229 (257)
T COG5010 226 VQEL 229 (257)
T ss_pred cccc
Confidence 6544
No 122
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.94 E-value=0.14 Score=40.67 Aligned_cols=168 Identities=11% Similarity=0.060 Sum_probs=99.0
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHH-----HHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHh--
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAV-----KMFDALSKDGLTHEALQLFAQIKDKG-HMPDVVAHTAVIEAYAS-- 134 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-----~ll~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~-- 134 (257)
..+...|+++.|.+.|+.+...--.+... .+..++.+.++++.|...|++..+.- -.|++ -|--.+.+.+.
T Consensus 40 ~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~a~Y~~g~~~~~ 118 (243)
T PRK10866 40 QQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DYVLYMRGLTNMA 118 (243)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HHHHHHHHHhhhh
Confidence 55567889999999999888743322222 26677888999999999998887652 22332 33344444331
Q ss_pred c---------------CC---hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCC
Q 043311 135 A---------------GQ---GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196 (257)
Q Consensus 135 ~---------------~~---~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 196 (257)
. .| ..+|+..|+.+. +-|-. ..-..+|...+..+.+. =
T Consensus 119 ~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li---------------~~yP~-----S~ya~~A~~rl~~l~~~----l 174 (243)
T PRK10866 119 LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV---------------RGYPN-----SQYTTDATKRLVFLKDR----L 174 (243)
T ss_pred cchhhhhhccCCCccccCHHHHHHHHHHHHHHH---------------HHCcC-----ChhHHHHHHHHHHHHHH----H
Confidence 0 01 123333444433 33222 22244444444444321 0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHhhcCCchhhHHhhh
Q 043311 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAK--GFVPDEKAVKEALIDKRGQGFRGVINILF 255 (257)
Q Consensus 197 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g~~~~~~~l~ 255 (257)
...--.+.+-|.+.|.+..|..=++.+.+. +-.........+..+|...|..+.+.++.
T Consensus 175 a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~ 235 (243)
T PRK10866 175 AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVA 235 (243)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 111113445577888888888888888876 55566777778888888888888776643
No 123
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.92 E-value=0.021 Score=40.33 Aligned_cols=82 Identities=12% Similarity=0.052 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHH---------------HCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHH
Q 043311 122 VVAHTAVIEAYASAGQGKEALRVFMRML---------------ASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186 (257)
Q Consensus 122 ~~~~~~li~~~~~~~~~~~a~~~~~~m~---------------~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~ 186 (257)
..++.++|.++++.|+++....+++..= ...+.|+..+..+++.+|+..++ +..|.++++
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~-----i~~al~~vd 76 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGD-----IFSALKLVD 76 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhccc-----HHHHHHHHH
Confidence 3455555555666665555555554321 12345677777777777766333 777777777
Q ss_pred HHH-hCCCCCCHHHHHHHHHHHH
Q 043311 187 EMV-GKGMRPNAGTYTAVFEAFV 208 (257)
Q Consensus 187 ~m~-~~g~~p~~~~~~~li~~~~ 208 (257)
.+. ..+++.+..+|..|++=+.
T Consensus 77 ~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 77 FFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHH
Confidence 655 3566666667776665443
No 124
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.89 E-value=0.054 Score=45.62 Aligned_cols=101 Identities=15% Similarity=0.054 Sum_probs=71.3
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCc
Q 043311 95 DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174 (257)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~ 174 (257)
..+...|+++.|.+.|++..+.. .-+...|..+-.+|.+.|++++|+..+++..+.. +.+...|..+-.+|...|+
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~-- 85 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE-- 85 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC--
Confidence 45667788888888888887752 2245677777778888888888888888887753 3356677777777777444
Q ss_pred chhHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043311 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVF 204 (257)
Q Consensus 175 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 204 (257)
++.|...|+..... .|+.......+
T Consensus 86 ---~~eA~~~~~~al~l--~P~~~~~~~~l 110 (356)
T PLN03088 86 ---YQTAKAALEKGASL--APGDSRFTKLI 110 (356)
T ss_pred ---HHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 88888888887753 45555444444
No 125
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.82 E-value=0.0037 Score=40.66 Aligned_cols=79 Identities=16% Similarity=0.225 Sum_probs=32.6
Q ss_pred CChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCH
Q 043311 136 GQGKEALRVFMRMLASGV-APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA-GTYTAVFEAFVRAQKV 213 (257)
Q Consensus 136 ~~~~~a~~~~~~m~~~g~-~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~~~~ 213 (257)
|+++.|..+|+++.+..- .++...+-.+-..+.+ .|.+++|..+++. .+ +.|+. ...-.+-.+|.+.|++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~-----~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y 74 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ-----QGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKY 74 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH-----TTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-H
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH-----CCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCH
Confidence 455555555555554321 1122333334444555 3335555555544 11 11111 1111223445555555
Q ss_pred HHHHHHHHH
Q 043311 214 DEARGLLQQ 222 (257)
Q Consensus 214 ~~a~~~~~~ 222 (257)
++|.+++++
T Consensus 75 ~eAi~~l~~ 83 (84)
T PF12895_consen 75 EEAIKALEK 83 (84)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 555555543
No 126
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.79 E-value=0.22 Score=40.75 Aligned_cols=167 Identities=14% Similarity=0.204 Sum_probs=108.4
Q ss_pred CHHHHHHHHHHHHhC-----CCCCcHH-HHHHHHHhcCC-h----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cC
Q 043311 70 DPRNLQEIFHKMRTE-----GLTNNAV-KMFDALSKDGL-T----HEALQLFAQIKDKGHMPDVVAHTAVIEAYAS--AG 136 (257)
Q Consensus 70 ~~~~a~~~~~~m~~~-----~~~p~~~-~ll~~~~~~~~-~----~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~--~~ 136 (257)
+.+...++-+.+++. ++..+.. .+...++-.+. + ++..++++.|.+.|+.-+..+|-+..-.... ..
T Consensus 34 d~~~~~~~~~~IK~~t~~fS~lr~~~~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~ 113 (297)
T PF13170_consen 34 DAERFKEISKYIKKNTGWFSPLRGNHRFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKE 113 (297)
T ss_pred CHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccc
Confidence 444555555555552 2333322 34444444444 4 5577889999999999998887774444433 22
Q ss_pred ----ChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHH
Q 043311 137 ----QGKEALRVFMRMLASG---VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAG-TYTAVFEAFV 208 (257)
Q Consensus 137 ----~~~~a~~~~~~m~~~g---~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~ 208 (257)
....|..+|+.|++.. ..++-.++.+++.. . .+.-....+.++.+|+.+.+.|+..+-. -+.+-|-++.
T Consensus 114 ~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~-~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~ 190 (297)
T PF13170_consen 114 DYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--T-SEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALS 190 (297)
T ss_pred cHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--c-cccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhc
Confidence 3578999999999874 35677888888765 2 1112344688899999999988877544 3444444443
Q ss_pred HcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043311 209 RAQ---KVDEARGLLQQMKAKGFVPDEKAVKEAL 239 (257)
Q Consensus 209 ~~~---~~~~a~~~~~~m~~~g~~p~~~t~~~ll 239 (257)
... ....+.++++.+.+.|+++....|..+=
T Consensus 191 ~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 191 EGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred cccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 322 2457889999999999998877766553
No 127
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.78 E-value=0.23 Score=44.35 Aligned_cols=176 Identities=14% Similarity=0.071 Sum_probs=105.2
Q ss_pred cCCCCHHHHHHHHHHHHhCCCCCcHH----HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 043311 66 EEPTDPRNLQEIFHKMRTEGLTNNAV----KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEA 141 (257)
Q Consensus 66 ~~~~~~~~a~~~~~~m~~~~~~p~~~----~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 141 (257)
-..||...|..++....+.. |+.. .-+..-+....++.|..+|..... ..|+..+|.--+..-.-.+..++|
T Consensus 595 w~agdv~~ar~il~~af~~~--pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA 670 (913)
T KOG0495|consen 595 WKAGDVPAARVILDQAFEAN--PNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEA 670 (913)
T ss_pred HhcCCcHHHHHHHHHHHHhC--CCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHH
Confidence 34577777777776666532 2222 234455566667777777766555 345666666666655566667777
Q ss_pred HHHHHHHHHCCCCCCH-HHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHH
Q 043311 142 LRVFMRMLASGVAPNA-YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN-AGTYTAVFEAFVRAQKVDEARGL 219 (257)
Q Consensus 142 ~~~~~~m~~~g~~~~~-~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~ 219 (257)
.+++++-.+. -|+- ..|..+=+.+-+ .++++.|.+.|..=.. ..|+ ...|-.|...=-+.|.+..|..+
T Consensus 671 ~rllEe~lk~--fp~f~Kl~lmlGQi~e~-----~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~i 741 (913)
T KOG0495|consen 671 LRLLEEALKS--FPDFHKLWLMLGQIEEQ-----MENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSI 741 (913)
T ss_pred HHHHHHHHHh--CCchHHHHHHHhHHHHH-----HHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHH
Confidence 7777666553 2322 233333333444 2335555554443222 2343 34566666666677788888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhh
Q 043311 220 LQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILF 255 (257)
Q Consensus 220 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~ 255 (257)
+++..-++ +-|..-|...|+.-.+.|+.+.|+.+.
T Consensus 742 ldrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lm 776 (913)
T KOG0495|consen 742 LDRARLKN-PKNALLWLESIRMELRAGNKEQAELLM 776 (913)
T ss_pred HHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHH
Confidence 88877665 446778888888888888888777654
No 128
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.75 E-value=0.079 Score=39.36 Aligned_cols=61 Identities=15% Similarity=0.102 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHH
Q 043311 124 AHTAVIEAYASAGQGKEALRVFMRMLASGVAP--NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189 (257)
Q Consensus 124 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~--~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~ 189 (257)
.|..+...+...|++++|...|++.......+ ...+|..+-..+... |..++|...++...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~-----g~~~eA~~~~~~Al 99 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSN-----GEHTKALEYYFQAL 99 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHc-----CCHHHHHHHHHHHH
Confidence 34444444444555555555555544331111 123444444444442 22555555554444
No 129
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.73 E-value=0.0036 Score=40.70 Aligned_cols=47 Identities=15% Similarity=0.326 Sum_probs=21.4
Q ss_pred CChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 043311 101 GLTHEALQLFAQIKDKGH-MPDVVAHTAVIEAYASAGQGKEALRVFMR 147 (257)
Q Consensus 101 ~~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 147 (257)
|+++.|..+|+.+.+... .++...+-.+-.+|.+.|++++|..+++.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 445555555555544321 11233333345555555555555555544
No 130
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.73 E-value=0.011 Score=53.04 Aligned_cols=108 Identities=17% Similarity=0.161 Sum_probs=79.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 043311 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209 (257)
Q Consensus 130 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 209 (257)
.+-...+.|.+|..+++.++..+ .-+.-|..+.+.|+..|+ ++.|+++|-+- -.++-.|.+|.+
T Consensus 740 eaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~d-----fe~ae~lf~e~---------~~~~dai~my~k 803 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGD-----FEIAEELFTEA---------DLFKDAIDMYGK 803 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchh-----HHHHHHHHHhc---------chhHHHHHHHhc
Confidence 34455678899999999998763 345568889999999666 99999998653 245667899999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhh
Q 043311 210 AQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILF 255 (257)
Q Consensus 210 ~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~ 255 (257)
+|+|.+|.++-.+. .|-+.....|.+--.-.-.+|.+..|+++|
T Consensus 804 ~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 804 AGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred cccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 99999999987664 343444555555555677778777777765
No 131
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=96.69 E-value=0.37 Score=44.84 Aligned_cols=188 Identities=13% Similarity=0.042 Sum_probs=125.6
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCC---CcHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcC--
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLT---NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDV-VAHTAVIEAYASAG-- 136 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~---p~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~~-- 136 (257)
.++-..|+++.|...|....+..-. -...-|-..|.+.|+.+.+...|+...+. .||- .+..+|=..|...+
T Consensus 315 Rs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~ 392 (1018)
T KOG2002|consen 315 RSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKK 392 (1018)
T ss_pred HHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhh
Confidence 6777899999999999887763221 12224888999999999999999998874 3544 45554444455443
Q ss_pred --ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 043311 137 --QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214 (257)
Q Consensus 137 --~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 214 (257)
..+.|..++.+-.+. ...|+..|..+-..+....- ...++.-....+.|...+-.+..+..|.+-.-+...|++.
T Consensus 393 ~~~~d~a~~~l~K~~~~-~~~d~~a~l~laql~e~~d~--~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~ 469 (1018)
T KOG2002|consen 393 QEKRDKASNVLGKVLEQ-TPVDSEAWLELAQLLEQTDP--WASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIE 469 (1018)
T ss_pred hHHHHHHHHHHHHHHhc-ccccHHHHHHHHHHHHhcCh--HHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChH
Confidence 456777777766654 25588889888888876322 1112222223334555666688899999999999999999
Q ss_pred HHHHHHHHHHHC---CCCCCH-----H-HHHHHHHHhhcCCchhhHHhhh
Q 043311 215 EARGLLQQMKAK---GFVPDE-----K-AVKEALIDKRGQGFRGVINILF 255 (257)
Q Consensus 215 ~a~~~~~~m~~~---g~~p~~-----~-t~~~ll~~~~~~g~~~~~~~l~ 255 (257)
.|...|...... ...+|. . +-..+-.....-++.+.|+..|
T Consensus 470 ~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Y 519 (1018)
T KOG2002|consen 470 KALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMY 519 (1018)
T ss_pred HHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHH
Confidence 999999998765 223333 2 2233333444455777777655
No 132
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.67 E-value=0.1 Score=44.01 Aligned_cols=100 Identities=15% Similarity=-0.029 Sum_probs=68.8
Q ss_pred ccCCCCHHHHHHHHHHHHhCCCCC-cHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 043311 65 DEEPTDPRNLQEIFHKMRTEGLTN-NAV-KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEAL 142 (257)
Q Consensus 65 ~~~~~~~~~a~~~~~~m~~~~~~p-~~~-~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 142 (257)
+...|+++.|.+.|++..+..-.. ... .+-.+|.+.|++++|...++...+.. ..+...|..+-.+|...|++++|.
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA~ 90 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTAK 90 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHHH
Confidence 446688888888888888743221 111 35667788888888888888887742 224567777778888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHH
Q 043311 143 RVFMRMLASGVAPNAYTYAVLIKGL 167 (257)
Q Consensus 143 ~~~~~m~~~g~~~~~~t~~~ll~~~ 167 (257)
..|++..+. .|+.......+..|
T Consensus 91 ~~~~~al~l--~P~~~~~~~~l~~~ 113 (356)
T PLN03088 91 AALEKGASL--APGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHH
Confidence 888888764 45554444444433
No 133
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.66 E-value=0.18 Score=43.97 Aligned_cols=144 Identities=12% Similarity=0.097 Sum_probs=111.3
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhccCCcchhHHHH
Q 043311 103 THEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP-NAYTYAVLIKGLAAAADGNAKILGDA 181 (257)
Q Consensus 103 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~t~~~ll~~~~~~~~~~~~~~~~a 181 (257)
.+....+++.....-..--+-+|-..|+.-.+..-++.|..+|.+..+.+..+ .+..++++|.-+|. +..+.|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs------kD~~~A 420 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS------KDKETA 420 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc------CChhHH
Confidence 34455566666554322334578888888888888999999999999887666 89999999998885 337899
Q ss_pred HHHHHH-HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHhhcCCchhhHHhh
Q 043311 182 QKYLME-MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD--EKAVKEALIDKRGQGFRGVINIL 254 (257)
Q Consensus 182 ~~~~~~-m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~~~~l 254 (257)
.++|+- |+..| -+..-.+..++-+...|+-..+..+|++....++.|+ ...|..+|.-=+.-|+...+.++
T Consensus 421 frIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~l 494 (656)
T KOG1914|consen 421 FRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKL 494 (656)
T ss_pred HHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHH
Confidence 999985 44443 2344556777888888999999999999999976664 47899999999999998888765
No 134
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.63 E-value=0.12 Score=42.83 Aligned_cols=103 Identities=17% Similarity=0.139 Sum_probs=56.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~ 172 (257)
.|.-|...|....|.++-.+++- ||-..|-..|.+|+..++|++...+-.. +-++.-|-.++.+|.+.
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fkv----~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~-- 250 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFKV----PDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKY-- 250 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcCC----cHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHC--
Confidence 45555556666666665555432 5666666666666666666665443221 12335666666666663
Q ss_pred CcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 043311 173 GNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220 (257)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 220 (257)
|...+|..++..+ ++.--+..|.+.|++.+|.+.-
T Consensus 251 ---~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 251 ---GNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred ---CCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHH
Confidence 3356666655542 1234455566666666665543
No 135
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.61 E-value=0.014 Score=42.20 Aligned_cols=70 Identities=30% Similarity=0.366 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHH-----hCCCCCCHH
Q 043311 124 AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV-----GKGMRPNAG 198 (257)
Q Consensus 124 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~-----~~g~~p~~~ 198 (257)
+...++..+...|++++|..+.+.+.... +.|...|..+|.++... |+...|.++|+.+. +.|+.|+..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~-----g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQ-----GRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHT-----T-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHC-----cCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 34444445555555555555555555432 33455555555555552 22555555555443 235555554
Q ss_pred H
Q 043311 199 T 199 (257)
Q Consensus 199 ~ 199 (257)
+
T Consensus 138 ~ 138 (146)
T PF03704_consen 138 T 138 (146)
T ss_dssp H
T ss_pred H
Confidence 4
No 136
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.26 Score=41.64 Aligned_cols=183 Identities=12% Similarity=0.029 Sum_probs=113.1
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHHHHH--HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAVKMF--DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ll--~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 140 (257)
...-..++++.|+.+-+...+..-..-..-++ ..+...+++++|.-.|+..+.- -+-+..+|.-|+..|...|++.+
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L-ap~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQML-APYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhc-chhhHHHHHHHHHHHHhhchHHH
Confidence 33344555555555555544422111111122 3456789999999999987763 12478899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHH-HHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHH
Q 043311 141 ALRVFMRMLASGVAPNAYTYAVL-IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA-GTYTAVFEAFVRAQKVDEARG 218 (257)
Q Consensus 141 a~~~~~~m~~~g~~~~~~t~~~l-l~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~~~~~~a~~ 218 (257)
|.-+-++..+. +.-+..+.+.+ -..|.. + ...-|+|.++++.-.. +.|+- ...+.+-.-|...|...++..
T Consensus 387 A~~~An~~~~~-~~~sA~~LtL~g~~V~~~--d--p~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~ 459 (564)
T KOG1174|consen 387 ANALANWTIRL-FQNSARSLTLFGTLVLFP--D--PRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIK 459 (564)
T ss_pred HHHHHHHHHHH-hhcchhhhhhhcceeecc--C--chhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHH
Confidence 88777665443 23344444433 122221 1 2224677777766543 34543 356666667777777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhh
Q 043311 219 LLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILF 255 (257)
Q Consensus 219 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~ 255 (257)
++++-.. ..||....+.|-.........+.+...|
T Consensus 460 LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y 494 (564)
T KOG1174|consen 460 LLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYY 494 (564)
T ss_pred HHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHH
Confidence 7777654 4677777777777777777766666555
No 137
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.55 E-value=0.25 Score=39.23 Aligned_cols=141 Identities=12% Similarity=0.059 Sum_probs=97.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~ 172 (257)
++.++.-.|.+.-....+.+..+..-+-++..-..|.+.-...||.+.|..+|++..+..-+.|..+++.++..-...-.
T Consensus 183 ~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~ 262 (366)
T KOG2796|consen 183 MANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLH 262 (366)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhhe
Confidence 44444556667777888888888766778888999999999999999999999998877667788888776654333222
Q ss_pred CcchhHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043311 173 GNAKILGDAQKYLMEMVGKGMRPNAGTYT--AVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEA 238 (257)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~l 238 (257)
..++++..+...+.++...+ .-|....| +|+..| .|+..+|.+.++.|... .|...+..++
T Consensus 263 lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllY--lg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 263 LGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLY--LGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred ecccchHHHHHHHhhccccC-CCchhhhchHHHHHHH--HHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 22344777888887776542 11333333 344444 47899999999998874 4554444433
No 138
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.54 E-value=0.033 Score=50.16 Aligned_cols=160 Identities=13% Similarity=0.183 Sum_probs=82.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCcHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 043311 67 EPTDPRNLQEIFHKMRTEGLTNNAV-KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVF 145 (257)
Q Consensus 67 ~~~~~~~a~~~~~~m~~~~~~p~~~-~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 145 (257)
..++|..|..+++.+.......... .+-+-|+..|+++.|.++|-+- ..++-.|.+|.++|+|+.|+++-
T Consensus 744 ~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla 814 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLA 814 (1636)
T ss_pred hhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHH
Confidence 3344444444444444333222221 2555666666666666666542 23556677777777777777765
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043311 146 MRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225 (257)
Q Consensus 146 ~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 225 (257)
.+.. |-+..+..|.+-..-.-+ .|.+.+|++++-.+. .|+ -.|.+|-+.|..|+.+++.++-..
T Consensus 815 ~e~~--~~e~t~~~yiakaedlde-----hgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~ 878 (1636)
T KOG3616|consen 815 EECH--GPEATISLYIAKAEDLDE-----HGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHG 878 (1636)
T ss_pred HHhc--CchhHHHHHHHhHHhHHh-----hcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhCh
Confidence 5442 334444555544444444 344666665553332 233 245666677777777666655322
Q ss_pred CCCCCCHHHHHHHHHHhhcCCchhhHHhh
Q 043311 226 KGFVPDEKAVKEALIDKRGQGFRGVINIL 254 (257)
Q Consensus 226 ~g~~p~~~t~~~ll~~~~~~g~~~~~~~l 254 (257)
.-+ ..|...+-.-+...|+...|+.-
T Consensus 879 d~l---~dt~~~f~~e~e~~g~lkaae~~ 904 (1636)
T KOG3616|consen 879 DHL---HDTHKHFAKELEAEGDLKAAEEH 904 (1636)
T ss_pred hhh---hHHHHHHHHHHHhccChhHHHHH
Confidence 111 23444445555555555555543
No 139
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=96.52 E-value=0.66 Score=42.81 Aligned_cols=120 Identities=13% Similarity=0.083 Sum_probs=68.1
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCC-CCcHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGL-TNNAV-KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~-~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 140 (257)
..+++ |++++|.+++.+..+..- .+-.. +|-..|-+.|+.+++...+-..-. -.+-|...|-.+=....+.|+++.
T Consensus 148 ~lfar-g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH-L~p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 148 NLFAR-GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH-LNPKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHHh-CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHhcccHHH
Confidence 34444 999999999988887433 23322 566677777777776664433222 122344566666666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHh
Q 043311 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190 (257)
Q Consensus 141 a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~ 190 (257)
|.-.|.+..+.. +++...+---...|-+.|+ ...|...|.++..
T Consensus 226 A~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~-----~~~Am~~f~~l~~ 269 (895)
T KOG2076|consen 226 ARYCYSRAIQAN-PSNWELIYERSSLYQKTGD-----LKRAMETFLQLLQ 269 (895)
T ss_pred HHHHHHHHHhcC-CcchHHHHHHHHHHHHhCh-----HHHHHHHHHHHHh
Confidence 666666665542 3344444444455555333 5555555555554
No 140
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.51 E-value=0.029 Score=46.20 Aligned_cols=182 Identities=14% Similarity=0.077 Sum_probs=109.4
Q ss_pred cccCCCCccchhhcccCCCCCCccccccccccCCC-------CHHHHHHHHHHHHhCCCC----CcHHHHHHHHHhcCCh
Q 043311 35 LSSSSDQPTKKYVNTKSKLPPPYDPFKKVVDEEPT-------DPRNLQEIFHKMRTEGLT----NNAVKMFDALSKDGLT 103 (257)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-------~~~~a~~~~~~m~~~~~~----p~~~~ll~~~~~~~~~ 103 (257)
+..++.+.+..+.....+..|-.........++.| ...-|.+.|.-.-..+.. |-..++-.++.-...+
T Consensus 296 L~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qF 375 (557)
T KOG3785|consen 296 LNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQF 375 (557)
T ss_pred cccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHH
Confidence 44455555555554444444443332222222222 234456666555555443 3334566666666677
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHhccCCcchhHHHHH
Q 043311 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK-GLAAAADGNAKILGDAQ 182 (257)
Q Consensus 104 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~-~~~~~~~~~~~~~~~a~ 182 (257)
++++-.+..++..-+.-|...|| +-.+++..|.+.+|.++|-......++ |..+|-.++. .|.+ ++..+.||
T Consensus 376 ddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~-----nkkP~lAW 448 (557)
T KOG3785|consen 376 DDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIR-----NKKPQLAW 448 (557)
T ss_pred HHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHh-----cCCchHHH
Confidence 77777777777664444555554 567788888899999999877765555 6667766554 4466 44478888
Q ss_pred HHHHHHHhCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 043311 183 KYLMEMVGKGMRPNAGT-YTAVFEAFVRAQKVDEARGLLQQMKAK 226 (257)
Q Consensus 183 ~~~~~m~~~g~~p~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~ 226 (257)
.++-.+.. +-+..+ ...+..-|.+.+.+--|-+.|++++..
T Consensus 449 ~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 449 DMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred HHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 77766543 223333 333446788888888888888888764
No 141
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.48 E-value=0.41 Score=42.48 Aligned_cols=136 Identities=15% Similarity=0.008 Sum_probs=91.6
Q ss_pred CCCCCHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhccCC---cchhHHHHHHHHHH
Q 043311 117 GHMPDVVAHTAVIEAYASAG-----QGKEALRVFMRMLASGVAPN-AYTYAVLIKGLAAAADG---NAKILGDAQKYLME 187 (257)
Q Consensus 117 g~~p~~~~~~~li~~~~~~~-----~~~~a~~~~~~m~~~g~~~~-~~t~~~ll~~~~~~~~~---~~~~~~~a~~~~~~ 187 (257)
+.+.|...|...+++..... +.+.|..+|++..+. .|| ...|..+..++...... ....+..+.+..+.
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 44567889999999966533 367899999998875 554 34555443333221111 11234444544444
Q ss_pred HHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 188 MVGK-GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 188 m~~~-g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
.... ....+...|.++--.+...|++++|...+++..+.+ |+...|..+-..+...|+.+.|...|+
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~ 477 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYS 477 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3332 233455678777666677899999999999998865 788888888889999999999888765
No 142
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.48 E-value=0.57 Score=43.23 Aligned_cols=104 Identities=13% Similarity=0.127 Sum_probs=73.2
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHH--HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAV--KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 140 (257)
....+.|..++|..+++.....+...+.. .+-.+|...++.++|..+|+...+. .|+-.....+.-+|.+.+++.+
T Consensus 51 Lsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 51 LSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKK 128 (932)
T ss_pred HHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHH
Confidence 67788899999998888877766553332 3666777888899999999888764 5777777777888888887766
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043311 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAA 169 (257)
Q Consensus 141 a~~~~~~m~~~g~~~~~~t~~~ll~~~~~ 169 (257)
-.+.=-+|.+ ..+-+.+.|-.+|+.+..
T Consensus 129 qQkaa~~LyK-~~pk~~yyfWsV~Slilq 156 (932)
T KOG2053|consen 129 QQKAALQLYK-NFPKRAYYFWSVISLILQ 156 (932)
T ss_pred HHHHHHHHHH-hCCcccchHHHHHHHHHH
Confidence 5555444444 244456666666666554
No 143
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.35 Score=42.35 Aligned_cols=180 Identities=16% Similarity=0.090 Sum_probs=115.8
Q ss_pred CCCCHHHHHHHHHHHHh--CCCCCcHHHHHHHHHhcCChHHHHHHHHHHHhC--C-CCCCHHHHHHHHHHHHhcCChHHH
Q 043311 67 EPTDPRNLQEIFHKMRT--EGLTNNAVKMFDALSKDGLTHEALQLFAQIKDK--G-HMPDVVAHTAVIEAYASAGQGKEA 141 (257)
Q Consensus 67 ~~~~~~~a~~~~~~m~~--~~~~p~~~~ll~~~~~~~~~~~a~~~~~~m~~~--g-~~p~~~~~~~li~~~~~~~~~~~a 141 (257)
-.|...+|.+.|..... ....|-+..+--.|.-.|.-+.|+..|...-+- | ..|. .|-. + =|.+.++.+.|
T Consensus 324 ~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~--LYlg-m-ey~~t~n~kLA 399 (611)
T KOG1173|consen 324 MIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPS--LYLG-M-EYMRTNNLKLA 399 (611)
T ss_pred HhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchH--HHHH-H-HHHHhccHHHH
Confidence 33677777777765554 223444445555666666666666665544432 1 1121 1211 1 16677888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhC--CC---CC-CHHHHHHHHHHHHHcCCHHH
Q 043311 142 LRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK--GM---RP-NAGTYTAVFEAFVRAQKVDE 215 (257)
Q Consensus 142 ~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~--g~---~p-~~~~~~~li~~~~~~~~~~~ 215 (257)
.+.|.+-..- .+-|+..++-+=-..-. .+.+.+|..+|+.-... .+ .+ -..+++.|=-+|.+.+.+++
T Consensus 400 e~Ff~~A~ai-~P~Dplv~~Elgvvay~-----~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 400 EKFFKQALAI-APSDPLVLHELGVVAYT-----YEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred HHHHHHHHhc-CCCcchhhhhhhheeeh-----HhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 8888776543 23345555544333333 33488999988876621 11 11 33457777788899999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 216 ARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 216 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
|+..++...... +-|..|++++--.+.-.|+.+.|...|-|
T Consensus 474 AI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhK 514 (611)
T KOG1173|consen 474 AIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHK 514 (611)
T ss_pred HHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHH
Confidence 999999998763 55888999999999999999999988754
No 144
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=96.44 E-value=0.43 Score=44.81 Aligned_cols=211 Identities=10% Similarity=0.072 Sum_probs=128.1
Q ss_pred hhhhhhhcccCCCCccchhhcccCCCCCCcccccc---ccccCCCCHHHHHH------------------HHHHHHhCCC
Q 043311 28 NATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKK---VVDEEPTDPRNLQE------------------IFHKMRTEGL 86 (257)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~---~~~~~~~~~~~a~~------------------~~~~m~~~~~ 86 (257)
..++......+.++.+.+.........|+...+-. ..+.+.++.+.+.. ++..|...+-
T Consensus 35 ~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~~i~~~~~ 114 (906)
T PRK14720 35 DDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICDKILLYGE 114 (906)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHHHHHHhhhh
Confidence 34444444556666666665555555555444433 33344444444333 3333333222
Q ss_pred CCcHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043311 87 TNNAV-KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165 (257)
Q Consensus 87 ~p~~~-~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~ 165 (257)
...+. ++-.+|-+.|+.+++..+|++..+.. .-|+.+.|.+=..|+.. ++++|.+++.+.... -.+..-|+.+..
T Consensus 115 ~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~--~i~~kq~~~~~e 190 (906)
T PRK14720 115 NKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR--FIKKKQYVGIEE 190 (906)
T ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH--HHhhhcchHHHH
Confidence 22222 57778888999999999999999875 44678888888889888 999999998887654 222333444444
Q ss_pred HHHhccCCcchhHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 043311 166 GLAAAADGNAKILGDAQKYLMEMVGK-GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKR 243 (257)
Q Consensus 166 ~~~~~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 243 (257)
...+.=..+...++.-..+.+.+... |..--..++-.+-..|-..++|+++..+++...+.. .-|.....-++..|.
T Consensus 191 ~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 191 IWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 32221111122244444455555432 445556677778888889999999999999998864 235555666666544
No 145
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.42 E-value=0.26 Score=43.90 Aligned_cols=45 Identities=11% Similarity=0.211 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043311 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169 (257)
Q Consensus 123 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~ 169 (257)
..|++|-+-|.+.|++++|.++|++-.+. ..+..-|+.+.++|+.
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~ 293 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQ 293 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHH
Confidence 35999999999999999999999987664 4466667777777665
No 146
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.37 E-value=0.23 Score=42.38 Aligned_cols=140 Identities=19% Similarity=0.234 Sum_probs=99.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhc
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKG-HMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY-AVLIKGLAAA 170 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~-~~ll~~~~~~ 170 (257)
.|+...+...++.|..+|.+.++.| +.+++.+++++|.-++ .|+...|..+|+-=..+ -||...| .-.+.-+...
T Consensus 403 ~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~i 479 (660)
T COG5107 403 HLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRI 479 (660)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHh
Confidence 4555556677888999999999998 6788999999999665 56678899999763332 3344444 3455556665
Q ss_pred cCCcchhHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 043311 171 ADGNAKILGDAQKYLMEMVGKGMRPN--AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKR 243 (257)
Q Consensus 171 ~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 243 (257)
++ -+.|..+|+.-..+ +.-+ ...|..+|+-=...|++..+..+-++|.. +.|...+...+..-|.
T Consensus 480 nd-----e~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ 546 (660)
T COG5107 480 ND-----EENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYA 546 (660)
T ss_pred Cc-----HHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHh
Confidence 55 77888888844321 2223 46799999988999999999999888876 4677666666665554
No 147
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.32 E-value=0.023 Score=34.75 Aligned_cols=56 Identities=25% Similarity=0.206 Sum_probs=40.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043311 94 FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150 (257)
Q Consensus 94 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 150 (257)
-..+.+.|++++|.++|+...+.. +-+...|..+=.++...|++++|..+|++..+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345677788888888888887764 22556777777777888888888888887765
No 148
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.31 E-value=0.039 Score=39.90 Aligned_cols=72 Identities=15% Similarity=0.190 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHH
Q 043311 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA-----KGFVPDEK 233 (257)
Q Consensus 159 t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~ 233 (257)
+...++..+.. .|.++.|..+.+.+... -+.|...|..+|.+|...|+...|.+.|+++.+ .|+.|+..
T Consensus 64 ~~~~l~~~~~~-----~~~~~~a~~~~~~~l~~-dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 64 ALERLAEALLE-----AGDYEEALRLLQRALAL-DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHH-----TT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHHHh-----ccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 44555555666 33377777777776654 255777777777777777777777777776642 37777766
Q ss_pred HHH
Q 043311 234 AVK 236 (257)
Q Consensus 234 t~~ 236 (257)
|-.
T Consensus 138 ~~~ 140 (146)
T PF03704_consen 138 TRA 140 (146)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 149
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.30 E-value=0.024 Score=34.93 Aligned_cols=49 Identities=16% Similarity=0.249 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043311 176 KILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225 (257)
Q Consensus 176 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 225 (257)
|++++|.++|+.+.... +-+...+-.+..+|.+.|++++|..+++++..
T Consensus 5 ~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp THHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred cCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33555555555554321 11344444455555555555555555555554
No 150
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.29 E-value=0.79 Score=41.17 Aligned_cols=179 Identities=13% Similarity=0.165 Sum_probs=117.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCcHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH-
Q 043311 69 TDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMR- 147 (257)
Q Consensus 69 ~~~~~a~~~~~~m~~~~~~p~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~- 147 (257)
.+.+.|.-++.+..+ +-|....|..+|.+...++.|..+++..++. ++.+..+|-+--..=-.+|+.+....++++
T Consensus 390 E~~~darilL~rAve--ccp~s~dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rg 466 (913)
T KOG0495|consen 390 EEPEDARILLERAVE--CCPQSMDLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRG 466 (913)
T ss_pred cChHHHHHHHHHHHH--hccchHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 333444444444444 4555556788888888888888888888875 666777887776666777888777777654
Q ss_pred ---HHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043311 148 ---MLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP--NAGTYTAVFEAFVRAQKVDEARGLLQQ 222 (257)
Q Consensus 148 ---m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~ 222 (257)
+...|++.|..-|..=...|-+ .|..-.|..++.....-|+.- -..||+.--+.|.+.+.++.|..+|..
T Consensus 467 l~~L~~ngv~i~rdqWl~eAe~~e~-----agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~ 541 (913)
T KOG0495|consen 467 LSELQANGVEINRDQWLKEAEACED-----AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAH 541 (913)
T ss_pred HHHHhhcceeecHHHHHHHHHHHhh-----cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHH
Confidence 4456788888777777777777 333667777776666555433 234677777777777777777777777
Q ss_pred HHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 223 MKAKGFVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 223 m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
..+- ..-+...|......--..|..+..+.+|.
T Consensus 542 alqv-fp~k~slWlra~~~ek~hgt~Esl~Allq 574 (913)
T KOG0495|consen 542 ALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQ 574 (913)
T ss_pred HHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 6653 23344555555555556666666665554
No 151
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.25 E-value=0.28 Score=37.79 Aligned_cols=174 Identities=15% Similarity=0.071 Sum_probs=86.3
Q ss_pred cccCCCCHHHHHHHHHHHHhCC-CCCcHH----HHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCC
Q 043311 64 VDEEPTDPRNLQEIFHKMRTEG-LTNNAV----KMFDALSKDGLTHEALQLFAQIKDKG-HMPDVVAHTAVIEAYASAGQ 137 (257)
Q Consensus 64 ~~~~~~~~~~a~~~~~~m~~~~-~~p~~~----~ll~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~~~ 137 (257)
..-..|++..|.+.|+.+...- ..|-.. .+..++.+.|+++.|...|+.+.+.- -.|. .-+-..+.+.+.-..
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~-~~~A~Y~~g~~~~~~ 92 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK-ADYALYMLGLSYYKQ 92 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc-hhhHHHHHHHHHHHh
Confidence 3445677788888887777632 122221 36777777788888877777765531 1222 222222333222111
Q ss_pred hHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH
Q 043311 138 GKEALRVFMRMLASGVA---PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD 214 (257)
Q Consensus 138 ~~~a~~~~~~m~~~g~~---~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 214 (257)
..... ....+.. --..+|..+++-|-. ....++|...+..+.+. . ...=-.+.+-|.+.|.+.
T Consensus 93 ~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~-----S~y~~~A~~~l~~l~~~---l-a~~e~~ia~~Y~~~~~y~ 158 (203)
T PF13525_consen 93 IPGIL-----RSDRDQTSTRKAIEEFEELIKRYPN-----SEYAEEAKKRLAELRNR---L-AEHELYIARFYYKRGKYK 158 (203)
T ss_dssp HHHHH------TT---HHHHHHHHHHHHHHHH-TT-----STTHHHHHHHHHHHHHH---H-HHHHHHHHHHHHCTT-HH
T ss_pred Cccch-----hcccChHHHHHHHHHHHHHHHHCcC-----chHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHcccHH
Confidence 11110 0000000 011233344444433 33355555555544431 0 111112446688899999
Q ss_pred HHHHHHHHHHHC--CCCCCHHHHHHHHHHhhcCCchhhHH
Q 043311 215 EARGLLQQMKAK--GFVPDEKAVKEALIDKRGQGFRGVIN 252 (257)
Q Consensus 215 ~a~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g~~~~~~ 252 (257)
.|..-++.+.+. +-.-.......++.++.+-|..+.+.
T Consensus 159 aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 159 AAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 999999999876 33333456677888888888877554
No 152
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.23 E-value=0.15 Score=42.10 Aligned_cols=180 Identities=11% Similarity=0.125 Sum_probs=94.3
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHH-----Hh----cCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAVKMFDAL-----SK----DGLTHEALQLFAQIKDKGHMPDV-VAHTAVIEAY 132 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ll~~~-----~~----~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~ 132 (257)
..+.+.+++++|..+.+++. +..|-.. ++.+. .+ ..+..-|...|.-..+.+..-|+ .--.++-..+
T Consensus 293 iYyL~q~dVqeA~~L~Kdl~--PttP~Ey-ilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~f 369 (557)
T KOG3785|consen 293 IYYLNQNDVQEAISLCKDLD--PTTPYEY-ILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYF 369 (557)
T ss_pred eeecccccHHHHHHHHhhcC--CCChHHH-HHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHH
Confidence 55566777777766655432 1223221 22222 11 11233355555555555444333 2344555555
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHHcC
Q 043311 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVF-EAFVRAQ 211 (257)
Q Consensus 133 ~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li-~~~~~~~ 211 (257)
.-..++++++-.++.+...=..-|...|| +.++.+..|+ ..+|+++|-.+....++ |..+|.+++ ++|.+.+
T Consensus 370 FL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgn-----y~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nk 442 (557)
T KOG3785|consen 370 FLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGN-----YVEAEELFIRISGPEIK-NKILYKSMLARCYIRNK 442 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcC-----hHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcC
Confidence 66666777777777666653343444443 4556666444 77777777665543333 455555444 6677777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HhhcCCchhhHHhhh
Q 043311 212 KVDEARGLLQQMKAKGFVPDEKAVKEALI-DKRGQGFRGVINILF 255 (257)
Q Consensus 212 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~-~~~~~g~~~~~~~l~ 255 (257)
....|++++-.+. -..+..+...+|. .|...+++--+.+-|
T Consensus 443 kP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAF 484 (557)
T KOG3785|consen 443 KPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAF 484 (557)
T ss_pred CchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7777776665543 2334444444443 466666655444444
No 153
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=96.21 E-value=0.49 Score=39.12 Aligned_cols=202 Identities=13% Similarity=0.149 Sum_probs=120.7
Q ss_pred hcccCCCCCCcccccc---ccccCCCCHHHHHHHHHHHHhCCCCCcHH-----------------HHHHHHHhcCChHHH
Q 043311 47 VNTKSKLPPPYDPFKK---VVDEEPTDPRNLQEIFHKMRTEGLTNNAV-----------------KMFDALSKDGLTHEA 106 (257)
Q Consensus 47 ~~~~~~~~p~~~~~~~---~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-----------------~ll~~~~~~~~~~~a 106 (257)
+.+...++|+...-.+ ..+.+.|.++.|..=|+...+........ ..+..+...|+...|
T Consensus 95 l~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~a 174 (504)
T KOG0624|consen 95 LSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNA 174 (504)
T ss_pred HHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhH
Confidence 4555567777655555 78889999999999999998864422211 135556668888889
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC-------------
Q 043311 107 LQLFAQIKDKGHMP-DVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD------------- 172 (257)
Q Consensus 107 ~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~------------- 172 (257)
++....+.+ +.| |...|..--.+|...|++..|..=++...+.. .-|+.++--+-..+-..|+
T Consensus 175 i~~i~~llE--i~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK 251 (504)
T KOG0624|consen 175 IEMITHLLE--IQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK 251 (504)
T ss_pred HHHHHHHHh--cCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence 888888876 333 66777777788888888888776665554432 2233333333333334333
Q ss_pred ----------------------------CcchhHHHHHHHHHHHHhCCCCCC--HHH---HHHHHHHHHHcCCHHHHHHH
Q 043311 173 ----------------------------GNAKILGDAQKYLMEMVGKGMRPN--AGT---YTAVFEAFVRAQKVDEARGL 219 (257)
Q Consensus 173 ----------------------------~~~~~~~~a~~~~~~m~~~g~~p~--~~~---~~~li~~~~~~~~~~~a~~~ 219 (257)
.+.+.|.++.+-.+...+. .|. .+. +..+=.++...+++.+|+..
T Consensus 252 ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~--ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqq 329 (504)
T KOG0624|consen 252 LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN--EPEETMIRYNGFRVLCTCYREDEQFGEAIQQ 329 (504)
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc--CCcccceeeeeeheeeecccccCCHHHHHHH
Confidence 1123344444444444332 232 222 33344455566778888877
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHhhcCCchhhHHhhh
Q 043311 220 LQQMKAKGFVPD-EKAVKEALIDKRGQGFRGVINILF 255 (257)
Q Consensus 220 ~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~~~~l~ 255 (257)
..+..+ +.|| ..++.---.+|...-+++.|..=|
T Consensus 330 C~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dy 364 (504)
T KOG0624|consen 330 CKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDY 364 (504)
T ss_pred HHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 777765 3454 566666566666655555555433
No 154
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.20 E-value=0.24 Score=34.65 Aligned_cols=100 Identities=21% Similarity=0.236 Sum_probs=56.9
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHH-----HHHHHHHhcCChHHHHHHHHHHHhCCCCCC---H-HHHHHHHHHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAV-----KMFDALSKDGLTHEALQLFAQIKDKGHMPD---V-VAHTAVIEAYA 133 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-----~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~---~-~~~~~li~~~~ 133 (257)
.++-..|+.++|..+|+.....|+..... .+-+.|...|++++|..+|+...... |+ . .....+--++.
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHH
Confidence 34456677777777777777776655432 25566667777777777777666542 32 1 11111222456
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 043311 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168 (257)
Q Consensus 134 ~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~ 168 (257)
..|+.++|++++-.... ++..-|.--|..|+
T Consensus 87 ~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 66777777777765542 23335555555444
No 155
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=96.14 E-value=0.35 Score=45.42 Aligned_cols=35 Identities=14% Similarity=0.160 Sum_probs=15.9
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043311 134 SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169 (257)
Q Consensus 134 ~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~ 169 (257)
+.|+.+++..+|+++.+.. .-|+...|.+--.|+.
T Consensus 128 k~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae 162 (906)
T PRK14720 128 KLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEE 162 (906)
T ss_pred HcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHH
Confidence 3344444444444444443 3344444444444444
No 156
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.04 E-value=0.26 Score=39.92 Aligned_cols=157 Identities=15% Similarity=0.118 Sum_probs=98.2
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-------------CHH----
Q 043311 96 ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP-------------NAY---- 158 (257)
Q Consensus 96 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~-------------~~~---- 158 (257)
...+.|+.+.|.+-|....+-|---....||..+.-|. .|+...|++...++.+.|++- |..
T Consensus 153 llykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~-~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgN 231 (459)
T KOG4340|consen 153 LLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYS-SRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGN 231 (459)
T ss_pred eeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHh-hhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccc
Confidence 34688999999999998877643344678888887664 567899999999998876542 211
Q ss_pred HH----HHHHHHHHhcc--CCcchhHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 043311 159 TY----AVLIKGLAAAA--DGNAKILGDAQKYLMEMVG-KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231 (257)
Q Consensus 159 t~----~~ll~~~~~~~--~~~~~~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 231 (257)
|. ..++.++--.. ....++++.|.+-+-+|.- ..-..|.+|...+--.- -.+++.+..+=+.-+...+- ..
T Consensus 232 t~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP 309 (459)
T KOG4340|consen 232 TLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FP 309 (459)
T ss_pred hHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CC
Confidence 11 12222210000 0123458888888888862 23344556543332211 23445555555555555533 45
Q ss_pred HHHHHHHHHHhhcCCchhhHHhhh
Q 043311 232 EKAVKEALIDKRGQGFRGVINILF 255 (257)
Q Consensus 232 ~~t~~~ll~~~~~~g~~~~~~~l~ 255 (257)
..||..++--|+++..++.|..++
T Consensus 310 ~ETFANlLllyCKNeyf~lAADvL 333 (459)
T KOG4340|consen 310 PETFANLLLLYCKNEYFDLAADVL 333 (459)
T ss_pred hHHHHHHHHHHhhhHHHhHHHHHH
Confidence 679999999999999988887664
No 157
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.04 E-value=0.41 Score=45.02 Aligned_cols=114 Identities=14% Similarity=0.215 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHH
Q 043311 122 VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYT 201 (257)
Q Consensus 122 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 201 (257)
...|.-+-.+-.+.|.+.+|.+-|-+- -|...|..+++.+.+ .|.|++-.+++...++..-+|... +
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~-----~~~~edLv~yL~MaRkk~~E~~id--~ 1170 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASR-----TGKYEDLVKYLLMARKKVREPYID--S 1170 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHh-----cCcHHHHHHHHHHHHHhhcCccch--H
Confidence 456777777777777777776655322 266778888888888 444888888777776665555554 3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhh
Q 043311 202 AVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILF 255 (257)
Q Consensus 202 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~ 255 (257)
.||-+|++.+++.+.+++. .-||......+=+-|...|.++.|.-+|
T Consensus 1171 eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y 1217 (1666)
T KOG0985|consen 1171 ELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLY 1217 (1666)
T ss_pred HHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHH
Confidence 5778888888877665554 3477777777777777777777776554
No 158
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.02 E-value=0.57 Score=37.03 Aligned_cols=146 Identities=15% Similarity=0.072 Sum_probs=105.4
Q ss_pred cCChHHHHHHHHHHHhC---C-CCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhccC
Q 043311 100 DGLTHEALQLFAQIKDK---G-HMPDVV-AHTAVIEAYASAGQGKEALRVFMRMLASG--VAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 100 ~~~~~~a~~~~~~m~~~---g-~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~~~~~t~~~ll~~~~~~~~ 172 (257)
..+.++..+++.++... | ..++.. .|.-++-+....|+.+.|...++.+...- ...=...+..++.+-..
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~--- 101 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGN--- 101 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhc---
Confidence 45678888888888643 4 567764 57788888999999999999999998762 22222445555665544
Q ss_pred CcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHH
Q 043311 173 GNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVIN 252 (257)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~ 252 (257)
+++|.++++.+.+.+ +-|.++|--=+...-..|+--+|++-+..-.+. +.-|...|.-+-.-|...|++++|-
T Consensus 102 -----~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~ 174 (289)
T KOG3060|consen 102 -----YKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAA 174 (289)
T ss_pred -----hhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHH
Confidence 999999999999765 446666654444444556555666655555543 6789999999999999999999886
Q ss_pred hhh
Q 043311 253 ILF 255 (257)
Q Consensus 253 ~l~ 255 (257)
-.+
T Consensus 175 fCl 177 (289)
T KOG3060|consen 175 FCL 177 (289)
T ss_pred HHH
Confidence 443
No 159
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.00 E-value=0.43 Score=35.52 Aligned_cols=76 Identities=17% Similarity=0.103 Sum_probs=44.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPD--VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~ 169 (257)
+-..+...|++++|...|++..+....+. ...|..+-..+.+.|++++|...+++..+.. +-+...+..+...+..
T Consensus 41 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~ 118 (172)
T PRK02603 41 DGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVIYHK 118 (172)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 44455666777777777777665432221 3466666677777777777777777766542 2234444444444444
No 160
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=95.90 E-value=0.2 Score=45.03 Aligned_cols=159 Identities=12% Similarity=0.025 Sum_probs=111.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----C-CCCCHHHHHHHHH
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS-----G-VAPNAYTYAVLIK 165 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g-~~~~~~t~~~ll~ 165 (257)
.++.+|...|+-.+|..+..+-.+ -+||...|..+-+......-+++|.++++..... | ...+...|....+
T Consensus 429 ~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~ 506 (777)
T KOG1128|consen 429 PVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADK 506 (777)
T ss_pred HHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHH
Confidence 389999999999999998877766 3688889999888888877788888888765422 1 1112223333333
Q ss_pred HHHhccC----------------CcchhHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 043311 166 GLAAAAD----------------GNAKILGDAQKYLMEMVGKGMRPNA-GTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228 (257)
Q Consensus 166 ~~~~~~~----------------~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 228 (257)
.+-..-. -..+++..+.+.|..-.. ..||. ..||.+-.+|.+.++-.+|...+.+..+.+
T Consensus 507 hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn- 583 (777)
T KOG1128|consen 507 HLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN- 583 (777)
T ss_pred HHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-
Confidence 2221111 112447777777766554 35654 679999999999999999999999998887
Q ss_pred CCCHHHHHHHHHHhhcCCchhhHHhhh
Q 043311 229 VPDEKAVKEALIDKRGQGFRGVINILF 255 (257)
Q Consensus 229 ~p~~~t~~~ll~~~~~~g~~~~~~~l~ 255 (257)
.-+...+-..+-.....|+++.|.+.+
T Consensus 584 ~~~w~iWENymlvsvdvge~eda~~A~ 610 (777)
T KOG1128|consen 584 YQHWQIWENYMLVSVDVGEFEDAIKAY 610 (777)
T ss_pred CCCCeeeechhhhhhhcccHHHHHHHH
Confidence 556667777777778888887776654
No 161
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=95.71 E-value=0.58 Score=34.82 Aligned_cols=115 Identities=16% Similarity=0.116 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHH
Q 043311 122 VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN--AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGT 199 (257)
Q Consensus 122 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 199 (257)
...|..+-..+...|++++|...|++..+.+-.++ ...|..+-..+.+.|+ ++.|...+++..... +-+...
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~-----~~~A~~~~~~al~~~-p~~~~~ 108 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGE-----HDKALEYYHQALELN-PKQPSA 108 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHhC-cccHHH
Confidence 34566666777778888888888888775432222 3566677777777444 888888888777543 335666
Q ss_pred HHHHHHHHHHcCC--------------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 043311 200 YTAVFEAFVRAQK--------------VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246 (257)
Q Consensus 200 ~~~li~~~~~~~~--------------~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 246 (257)
+..+-..+...|+ +++|.+++++.... .|+. +..++..+...|
T Consensus 109 ~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~--~p~~--~~~~~~~~~~~~ 165 (172)
T PRK02603 109 LNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL--APNN--YIEAQNWLKTTG 165 (172)
T ss_pred HHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh--Cchh--HHHHHHHHHhcC
Confidence 6677777777666 57788888877653 3443 545555444443
No 162
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=95.60 E-value=0.36 Score=35.80 Aligned_cols=113 Identities=12% Similarity=0.048 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCCHH
Q 043311 138 GKEALRVFMRML-ASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP--NAGTYTAVFEAFVRAQKVD 214 (257)
Q Consensus 138 ~~~a~~~~~~m~-~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~~~~~ 214 (257)
...+...+..+. ..+..--...|..+...+... |.+++|...|+......-.+ ...+|..+-..+...|+++
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~-----g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~ 89 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSE-----GEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHT 89 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHH
Confidence 334444555553 333333345666666667774 44999999999887542222 2347888889999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhh-------cCCchhhHHhhhc
Q 043311 215 EARGLLQQMKAKGFVPDEKAVKEALIDKR-------GQGFRGVINILFG 256 (257)
Q Consensus 215 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~-------~~g~~~~~~~l~~ 256 (257)
+|...+++..... +....++..+...+. ..|+.+.+...++
T Consensus 90 eA~~~~~~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 90 KALEYYFQALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHH
Confidence 9999999988752 233455666666666 7777776655543
No 163
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.52 E-value=0.72 Score=38.22 Aligned_cols=105 Identities=18% Similarity=0.183 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHH
Q 043311 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTA 202 (257)
Q Consensus 123 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 202 (257)
.+.+..|.-|...|+...|..+-.+.. .||..-|...+++++..++ |++-.++-.. +-+.+-|..
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~-----w~eL~~fa~s------kKsPIGyep 242 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKD-----WDELEKFAKS------KKSPIGYEP 242 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCC-----HHHHHHHHhC------CCCCCChHH
Confidence 355666777888899888877766663 5899999999999999555 8877765432 224588999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHH
Q 043311 203 VFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVIN 252 (257)
Q Consensus 203 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~ 252 (257)
++..|.+.|+..+|..+..+ +.+ ..-+..|.+.|++..|.
T Consensus 243 Fv~~~~~~~~~~eA~~yI~k-----~~~-----~~rv~~y~~~~~~~~A~ 282 (319)
T PF04840_consen 243 FVEACLKYGNKKEASKYIPK-----IPD-----EERVEMYLKCGDYKEAA 282 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHh-----CCh-----HHHHHHHHHCCCHHHHH
Confidence 99999999999999999888 222 23334555556555543
No 164
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.49 E-value=0.71 Score=34.24 Aligned_cols=129 Identities=15% Similarity=0.151 Sum_probs=85.2
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHH
Q 043311 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185 (257)
Q Consensus 106 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~ 185 (257)
..+....+.+.++.|+...|..+|+.+.+.|+.. .+..+.+.++-+|+......+-..... ...+.++=
T Consensus 13 llEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~----~L~qllq~~Vi~DSk~lA~~LLs~~~~-------~~~~~Ql~ 81 (167)
T PF07035_consen 13 LLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFS----QLHQLLQYHVIPDSKPLACQLLSLGNQ-------YPPAYQLG 81 (167)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH----HHHHHHhhcccCCcHHHHHHHHHhHcc-------ChHHHHHH
Confidence 3566677778899999999999999999999754 456777888888888877666544331 33444444
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHh
Q 043311 186 MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINI 253 (257)
Q Consensus 186 ~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~ 253 (257)
-+|..+ =...+..+++.+...|++-+|.++.+..... +...-..++.+....++...-..
T Consensus 82 lDMLkR----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~ 141 (167)
T PF07035_consen 82 LDMLKR----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYA 141 (167)
T ss_pred HHHHHH----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHH
Confidence 444432 1225677888888999999999988775322 11222445666666655544333
No 165
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.47 E-value=1.7 Score=39.00 Aligned_cols=142 Identities=11% Similarity=0.102 Sum_probs=93.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCCCHHHHHHHHHH
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS------GVAPNAYTYAVLIKG 166 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~~~~~t~~~ll~~ 166 (257)
.+......+.++-+..+|+...+- ++..-+--|.-+++.+++++|-+.+...... .-+-+...|.-+...
T Consensus 144 yl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdl 219 (835)
T KOG2047|consen 144 YLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDL 219 (835)
T ss_pred HHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHH
Confidence 444455566667777777777663 4555777788888888888888887666422 234566677777776
Q ss_pred HHhccCCcchhHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 043311 167 LAAAADGNAKILGDAQKYLMEMVGKGMRPNA--GTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRG 244 (257)
Q Consensus 167 ~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 244 (257)
..++.+ .+.--....++..+.. .-+|. ..|++|.+-|.+.|+++.|.++|++....- .+..-|+.+.++|+.
T Consensus 220 is~~p~--~~~slnvdaiiR~gi~--rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~ 293 (835)
T KOG2047|consen 220 ISQNPD--KVQSLNVDAIIRGGIR--RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQ 293 (835)
T ss_pred HHhCcc--hhcccCHHHHHHhhcc--cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHH
Confidence 666444 2222233344444432 23454 469999999999999999999999987653 355566677776654
No 166
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.46 E-value=0.61 Score=33.33 Aligned_cols=125 Identities=14% Similarity=0.129 Sum_probs=88.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcc
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA 171 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~ 171 (257)
.++..+...+.+.....+++.+...+ ..+...+|.+|..|++.+. ++..+.+.. ..+......+++.|.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~-- 81 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEK-- 81 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHH--
Confidence 58888888889999999999988876 3678899999999998753 455555542 1234445558888888
Q ss_pred CCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 043311 172 DGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA-QKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRG 244 (257)
Q Consensus 172 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 244 (257)
.+.++.+.-++..+.. ... .++.+... ++.+.|.+++.+ .-+...|..++..+..
T Consensus 82 ---~~l~~~~~~l~~k~~~-----~~~----Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l~ 137 (140)
T smart00299 82 ---AKLYEEAVELYKKDGN-----FKD----AIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALLD 137 (140)
T ss_pred ---cCcHHHHHHHHHhhcC-----HHH----HHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHHc
Confidence 5558888888877642 222 33333444 788888888876 2366788888877654
No 167
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.34 E-value=0.5 Score=41.45 Aligned_cols=149 Identities=9% Similarity=0.068 Sum_probs=94.0
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCC--------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHH
Q 043311 96 ALSKDGLTHEALQLFAQIKDKGHM--------PDVVAHTAVIEAYASAGQGKEALRVFMRMLAS-GVAPNAYTYAVLIKG 166 (257)
Q Consensus 96 ~~~~~~~~~~a~~~~~~m~~~g~~--------p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~t~~~ll~~ 166 (257)
.|...|.-..|+..++.......+ ++...=+. ..+.....+....++|-++... +.++|...+..|=-.
T Consensus 362 SytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVL 439 (579)
T KOG1125|consen 362 SYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVL 439 (579)
T ss_pred HHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHH
Confidence 445566667777777776543210 01000000 2233333456667777777644 544555555555444
Q ss_pred HHhccCCcchhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhc
Q 043311 167 LAAAADGNAKILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD-EKAVKEALIDKRG 244 (257)
Q Consensus 167 ~~~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~ 244 (257)
|-- .|.+++|..+|+.... ++| |..+||-|=..++...+-.+|...|.+..+ ++|+ .+....|-.+|..
T Consensus 440 y~l-----s~efdraiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mN 510 (579)
T KOG1125|consen 440 YNL-----SGEFDRAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMN 510 (579)
T ss_pred Hhc-----chHHHHHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhh
Confidence 445 3449999999998875 456 556899999999999999999999999887 4554 2344556667777
Q ss_pred CCchhhHHhhh
Q 043311 245 QGFRGVINILF 255 (257)
Q Consensus 245 ~g~~~~~~~l~ 255 (257)
.|.+.+|.+.|
T Consensus 511 lG~ykEA~~hl 521 (579)
T KOG1125|consen 511 LGAYKEAVKHL 521 (579)
T ss_pred hhhHHHHHHHH
Confidence 88777776554
No 168
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.06 E-value=0.29 Score=30.40 Aligned_cols=56 Identities=18% Similarity=0.102 Sum_probs=34.4
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043311 95 DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151 (257)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 151 (257)
..|.+.++++.|.++++.+.+.. +.+...|...=.++.+.|++++|...|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35566667777777777666642 124455555556666667777777777666654
No 169
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.00 E-value=2 Score=36.59 Aligned_cols=47 Identities=15% Similarity=0.211 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043311 176 KILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQKVDEARGLLQQMK 224 (257)
Q Consensus 176 ~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 224 (257)
++.+.|.-.|..... +.| +...|.-|+.+|...|.+.+|.-+-....
T Consensus 348 ~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~ 395 (564)
T KOG1174|consen 348 ERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTI 395 (564)
T ss_pred cchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHH
Confidence 345666655655443 232 55677777777777777776666554443
No 170
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=94.94 E-value=0.35 Score=44.57 Aligned_cols=110 Identities=18% Similarity=0.230 Sum_probs=65.2
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcch
Q 043311 99 KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY--ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK 176 (257)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~ 176 (257)
..+++..|....+.+.+. .|+. .|..++.++ .+.|+.++|..+++.....+.. |..|..++-..|.+ .+
T Consensus 21 d~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d-----~~ 91 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRD-----LG 91 (932)
T ss_pred hhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHH-----Hh
Confidence 355666666666655443 1332 334444443 4556777777766666655433 66777777666666 44
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 043311 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGL 219 (257)
Q Consensus 177 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~ 219 (257)
+.+++..+|+.... ..|+......+..+|++.+++.+-.++
T Consensus 92 ~~d~~~~~Ye~~~~--~~P~eell~~lFmayvR~~~yk~qQka 132 (932)
T KOG2053|consen 92 KLDEAVHLYERANQ--KYPSEELLYHLFMAYVREKSYKKQQKA 132 (932)
T ss_pred hhhHHHHHHHHHHh--hCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777777776654 356666666677777777666544443
No 171
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=94.89 E-value=0.34 Score=29.34 Aligned_cols=49 Identities=12% Similarity=0.137 Sum_probs=32.3
Q ss_pred chhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043311 175 AKILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225 (257)
Q Consensus 175 ~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 225 (257)
.|++++|.+.|+...+.. | +...+..+-..+...|++++|..+|++..+
T Consensus 10 ~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 10 QGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp CTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444777777777777653 4 445566666777777777777777777764
No 172
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.83 E-value=3.8 Score=39.08 Aligned_cols=158 Identities=13% Similarity=0.075 Sum_probs=98.7
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHH-------HHHHHHHhcCChHHHHHHHHHHHhC----CC-CCCHHHHHHHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAV-------KMFDALSKDGLTHEALQLFAQIKDK----GH-MPDVVAHTAVIE 130 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-------~ll~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~~~~~li~ 130 (257)
..+...|+++.+...++.....-...+.. .+-..+...|+++.|...+.+..+. |- .....++..+-.
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 44567899999999998877631111211 1344566789999999988877643 11 111234555566
Q ss_pred HHHhcCChHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhC--CCCCC--HHH
Q 043311 131 AYASAGQGKEALRVFMRMLAS----GVA--P-NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK--GMRPN--AGT 199 (257)
Q Consensus 131 ~~~~~~~~~~a~~~~~~m~~~----g~~--~-~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~--g~~p~--~~~ 199 (257)
.+...|++++|...+++.... |.. + ....+..+-..+.. .|+++.|...+++.... ...+. ...
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-----~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 614 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWE-----WARLDEAEQCARKGLEVLSNYQPQQQLQC 614 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH-----hcCHHHHHHHHHHhHHhhhccCchHHHHH
Confidence 778899999999998876542 221 1 22334444444555 34488988888776531 11122 233
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043311 200 YTAVFEAFVRAQKVDEARGLLQQMKA 225 (257)
Q Consensus 200 ~~~li~~~~~~~~~~~a~~~~~~m~~ 225 (257)
+..+-..+...|+.+.|.+.+++...
T Consensus 615 ~~~la~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 615 LAMLAKISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455677788999999998888754
No 173
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=94.80 E-value=1.2 Score=35.92 Aligned_cols=100 Identities=18% Similarity=0.171 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCC-
Q 043311 122 VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA----YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN- 196 (257)
Q Consensus 122 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~----~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~- 196 (257)
...|+..+..+.+.|++++|...|+.+.+. .|+. ..+--+-..|...|+ ++.|...|+.+.+. .|+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~-----~~~A~~~f~~vv~~--yP~s 213 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGK-----KDDAAYYFASVVKN--YPKS 213 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHH--CCCC
Confidence 345777777767789999999999999875 3332 455556667777444 99999999998753 122
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 043311 197 ---AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232 (257)
Q Consensus 197 ---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 232 (257)
...+--+...+...|+.+.|..+|++..+. .|+.
T Consensus 214 ~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~--yP~s 250 (263)
T PRK10803 214 PKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK--YPGT 250 (263)
T ss_pred cchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCC
Confidence 223333455677889999999999998875 4554
No 174
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.71 E-value=1.1 Score=32.23 Aligned_cols=74 Identities=19% Similarity=0.236 Sum_probs=52.2
Q ss_pred HHHhcCChHHHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043311 96 ALSKDGLTHEALQLFAQIKDKG-H-MPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169 (257)
Q Consensus 96 ~~~~~~~~~~a~~~~~~m~~~g-~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~ 169 (257)
...+.|++++|.+.|+.+..+- . .-....--.++.+|.+.+++++|...+++..+.+-.--..-|...+.|++.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 3456788888888888887761 1 123455667888888888888888888888876433233667777777766
No 175
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.62 E-value=2.5 Score=36.40 Aligned_cols=123 Identities=12% Similarity=0.144 Sum_probs=92.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHH-HHhCCCCCCHH
Q 043311 121 DVVAHTAVIEAYASAGQGKEALRVFMRMLASG-VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME-MVGKGMRPNAG 198 (257)
Q Consensus 121 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~-m~~~g~~p~~~ 198 (257)
-+.+|.+.|..-.+..-++.|..+|-+..+.| +.+++..++++|..++. |....|..+|+- |... ||..
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~------~d~~ta~~ifelGl~~f---~d~~ 466 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT------GDRATAYNIFELGLLKF---PDST 466 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc------CCcchHHHHHHHHHHhC---CCch
Confidence 46788899999888888999999999999999 78999999999998875 336788888875 4332 4444
Q ss_pred H-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHhhcCCchhhHHh
Q 043311 199 T-YTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD--EKAVKEALIDKRGQGFRGVINI 253 (257)
Q Consensus 199 ~-~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~~~~ 253 (257)
. .+-.+.-+.+-++-..|..+|+.-..+ +.-+ ..+|..+|.--...|+...+..
T Consensus 467 ~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~s 523 (660)
T COG5107 467 LYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYS 523 (660)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHh
Confidence 3 455666677888989999999954433 2222 4688888888888887755543
No 176
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=94.62 E-value=1 Score=31.47 Aligned_cols=57 Identities=21% Similarity=0.168 Sum_probs=37.6
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043311 95 DALSKDGLTHEALQLFAQIKDKGHMPDV--VAHTAVIEAYASAGQGKEALRVFMRMLAS 151 (257)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 151 (257)
.++-..|+.++|..+|+.-.+.|..... ..+-.+=..+...|++++|..+|++....
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455667777777777777777665442 23444555667777777777777776654
No 177
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.59 E-value=2.6 Score=37.09 Aligned_cols=173 Identities=13% Similarity=0.084 Sum_probs=107.1
Q ss_pred HHHHHHHhCCCCCcHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHh----cCChHHHHHHH
Q 043311 76 EIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDK-GHMPD-----VVAHTAVIEAYAS----AGQGKEALRVF 145 (257)
Q Consensus 76 ~~~~~m~~~~~~p~~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~~p~-----~~~~~~li~~~~~----~~~~~~a~~~~ 145 (257)
-+|.-+... ++|....++....-.|+-+.+++.+.+-.+. ++.-. .-.|+.++..+.. ..+.+.+.+++
T Consensus 178 G~f~L~lSl-LPp~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL 256 (468)
T PF10300_consen 178 GLFNLVLSL-LPPKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELL 256 (468)
T ss_pred HHHHHHHHh-CCHHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHH
Confidence 334444432 3455556888888889999999988776553 22211 2346666655544 45678999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhC--CCC--CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 043311 146 MRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK--GMR--PNAGTYTAVFEAFVRAQKVDEARGLLQ 221 (257)
Q Consensus 146 ~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~--g~~--p~~~~~~~li~~~~~~~~~~~a~~~~~ 221 (257)
..+.+. -|+..-|...-.-+... .|+++.|.+.|+..... ..+ .....|. +.-.+.-..+|++|.+.|.
T Consensus 257 ~~~~~~--yP~s~lfl~~~gR~~~~----~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~E-l~w~~~~~~~w~~A~~~f~ 329 (468)
T PF10300_consen 257 EEMLKR--YPNSALFLFFEGRLERL----KGNLEEAIESFERAIESQSEWKQLHHLCYFE-LAWCHMFQHDWEEAAEYFL 329 (468)
T ss_pred HHHHHh--CCCcHHHHHHHHHHHHH----hcCHHHHHHHHHHhccchhhHHhHHHHHHHH-HHHHHHHHchHHHHHHHHH
Confidence 999875 67877665544333221 45599999999975431 111 1122233 3334666789999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHh-hcCCch-------hhHHhhhcC
Q 043311 222 QMKAKGFVPDEKAVKEALIDK-RGQGFR-------GVINILFGK 257 (257)
Q Consensus 222 ~m~~~g~~p~~~t~~~ll~~~-~~~g~~-------~~~~~l~~k 257 (257)
++.+.. ..+..+|..+..+| ...|.. +.|..+|.|
T Consensus 330 ~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~ 372 (468)
T PF10300_consen 330 RLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRK 372 (468)
T ss_pred HHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHH
Confidence 999863 34555555555543 345666 677777653
No 178
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.52 E-value=2.4 Score=40.39 Aligned_cols=189 Identities=12% Similarity=0.025 Sum_probs=116.3
Q ss_pred ccccCCCCHHHHHHHHHHHHhC--CC----CCcHHH-----HHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTE--GL----TNNAVK-----MFDALSKDGLTHEALQLFAQIKDKGHMPDV----VAHTA 127 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~--~~----~p~~~~-----ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ 127 (257)
..+...|+++++..++...... .. .+.... +-..+...|+++.|...++...+.-...+. ...+.
T Consensus 417 ~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 496 (903)
T PRK04841 417 WLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSV 496 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 4455778999999988877542 11 111111 223456789999999999887653111121 24455
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC--C-CC--CHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHh----CCCC--C-
Q 043311 128 VIEAYASAGQGKEALRVFMRMLASG--V-AP--NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG----KGMR--P- 195 (257)
Q Consensus 128 li~~~~~~~~~~~a~~~~~~m~~~g--~-~~--~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~----~g~~--p- 195 (257)
+-..+...|++++|...+++..... . .+ -..++..+-..+... |+++.|...+++... .|.. +
T Consensus 497 lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~-----G~~~~A~~~~~~al~~~~~~~~~~~~~ 571 (903)
T PRK04841 497 LGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ-----GFLQAAYETQEKAFQLIEEQHLEQLPM 571 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHhccccccH
Confidence 5566778999999999998876431 1 11 123444455566664 448899888777553 2321 1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 196 NAGTYTAVFEAFVRAQKVDEARGLLQQMKAK--GFVPD--EKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 196 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~--~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
....+..+-..+...|++++|...+++.... ...+. ...+..+-......|+.+.+...++
T Consensus 572 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~ 636 (903)
T PRK04841 572 HEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLN 636 (903)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 2233445556677789999999999887653 12222 2333334456778898888876654
No 179
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=94.42 E-value=1.5 Score=35.70 Aligned_cols=168 Identities=14% Similarity=0.168 Sum_probs=87.3
Q ss_pred CHHHHHHHHHHHHhCCCCCcHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChHHHHHH
Q 043311 70 DPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDK----GHMPD-VVAHTAVIEAYASAGQGKEALRV 144 (257)
Q Consensus 70 ~~~~a~~~~~~m~~~~~~p~~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~~~~~~a~~~ 144 (257)
+++.|..+|...- ..|...|++++|.+.|....+. +-..+ ...|.....+|.+. ++++|...
T Consensus 30 ~~e~Aa~~y~~Aa------------~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~ 96 (282)
T PF14938_consen 30 DYEEAADLYEKAA------------NCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIEC 96 (282)
T ss_dssp HHHHHHHHHHHHH------------HHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHH
T ss_pred CHHHHHHHHHHHH------------HHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHH
Confidence 5555555555443 3444556666665555544211 11111 12334444444333 66666666
Q ss_pred HHHHHH----CCCCCC--HHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHHHcCC
Q 043311 145 FMRMLA----SGVAPN--AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG----KGMRPN--AGTYTAVFEAFVRAQK 212 (257)
Q Consensus 145 ~~~m~~----~g~~~~--~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~----~g~~p~--~~~~~~li~~~~~~~~ 212 (257)
+++... .| .|+ ..++..+-..|... .|.++.|.+.|+.-.+ .| .+. ...+.-+...+++.|+
T Consensus 97 ~~~A~~~y~~~G-~~~~aA~~~~~lA~~ye~~----~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~ 170 (282)
T PF14938_consen 97 YEKAIEIYREAG-RFSQAAKCLKELAEIYEEQ----LGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGR 170 (282)
T ss_dssp HHHHHHHHHHCT--HHHHHHHHHHHHHHHCCT----T--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCC
Confidence 655442 22 111 23444444555552 0347888887776542 23 111 2346777788999999
Q ss_pred HHHHHHHHHHHHHCCCC-----CCHH-HHHHHHHHhhcCCchhhHHhhhc
Q 043311 213 VDEARGLLQQMKAKGFV-----PDEK-AVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 213 ~~~a~~~~~~m~~~g~~-----p~~~-t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
+++|.++|++....-.. .+.. .|...+-.+...|+.-.|.+.|+
T Consensus 171 y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~ 220 (282)
T PF14938_consen 171 YEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALE 220 (282)
T ss_dssp HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999998865322 2222 23333446667788888877765
No 180
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=94.30 E-value=0.15 Score=31.36 Aligned_cols=63 Identities=19% Similarity=0.161 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Q 043311 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQ-KVDEARGLLQQMKA 225 (257)
Q Consensus 156 ~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~ 225 (257)
+..+|..+-..+.. .|++++|...|+...+. .| +...|..+-.+|.+.| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~-----~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQ-----QGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHH-----TTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 45566666667777 44478888877776653 23 4455666667777777 67777777776654
No 181
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.29 E-value=2 Score=35.26 Aligned_cols=47 Identities=17% Similarity=0.429 Sum_probs=26.8
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHH
Q 043311 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188 (257)
Q Consensus 137 ~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m 188 (257)
+.+++..++..=.+.|+-||.+|++.+|+.+.+.++ +.+|.++.-.|
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n-----~~~aa~vvt~~ 161 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKEN-----YKDAASVVTEV 161 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhccc-----HHHHHHHHHHH
Confidence 355666666666666666666666666666666333 55555554443
No 182
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.18 E-value=1.6 Score=35.33 Aligned_cols=98 Identities=18% Similarity=0.217 Sum_probs=44.2
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcC
Q 043311 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN-AGTYTAVFEAFVRAQ 211 (257)
Q Consensus 133 ~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~ 211 (257)
.+.+++++|+..|.+-++.. +-|.+-|..--.+|.+.|. ++.|++=-+.-.. +.|. ..+|..|=.+|...|
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~-----~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGE-----YEDAVKDCESALS--IDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcc-----hHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccC
Confidence 44455555555555555431 2344555555555555332 3333322221111 1121 134555555555555
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043311 212 KVDEARGLLQQMKAKGFVPDEKAVKEALI 240 (257)
Q Consensus 212 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 240 (257)
++.+|.+.|++.++ +.|+-.+|-.=|.
T Consensus 164 k~~~A~~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 164 KYEEAIEAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred cHHHHHHHHHhhhc--cCCCcHHHHHHHH
Confidence 55555555555443 4455555444433
No 183
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=94.15 E-value=0.9 Score=41.11 Aligned_cols=134 Identities=12% Similarity=0.031 Sum_probs=93.9
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhccCCcchhH
Q 043311 100 DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP-NAYTYAVLIKGLAAAADGNAKIL 178 (257)
Q Consensus 100 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~t~~~ll~~~~~~~~~~~~~~ 178 (257)
.++++++.+.|+.-.+-. .....+|-..=.+..+.++++.|.+-|..-..- .| +...||++-.+|.+.+. -
T Consensus 498 ~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~-----k 569 (777)
T KOG1128|consen 498 NKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKK-----K 569 (777)
T ss_pred chhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhh-----h
Confidence 466666666666443321 124556777777777888999999999887763 44 45789999999999444 8
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHh
Q 043311 179 GDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG-FVPDEKAVKEALIDK 242 (257)
Q Consensus 179 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~ 242 (257)
.+|...+.+-.+.. .-+...|..-+-...+.|.+++|.+.+.++.+.. -.-|......++...
T Consensus 570 ~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 570 KRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred HHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHH
Confidence 89999999888765 3355566667777789999999999999987642 122544555555443
No 184
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.11 E-value=5.6 Score=37.99 Aligned_cols=102 Identities=16% Similarity=0.153 Sum_probs=72.1
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCC-----------------------CCcHH-HHHHHHHhcCChHHHHHHHHHHHhCCC
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGL-----------------------TNNAV-KMFDALSKDGLTHEALQLFAQIKDKGH 118 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~-----------------------~p~~~-~ll~~~~~~~~~~~a~~~~~~m~~~g~ 118 (257)
..+..++-+++|..+|+...-.+. .|..+ .+-.+-.+.|.+.+|.+-|-. .
T Consensus 1056 ~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyik--a--- 1130 (1666)
T KOG0985|consen 1056 EIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIK--A--- 1130 (1666)
T ss_pred HHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHh--c---
Confidence 567788889999988876543211 12222 366677778888888775533 2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC
Q 043311 119 MPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 119 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~ 172 (257)
-|+..|.-+|+...+.|.|++-..++.-.+++.-+|.+. +.+|-+|++.+.
T Consensus 1131 -dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~r 1181 (1666)
T KOG0985|consen 1131 -DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNR 1181 (1666)
T ss_pred -CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhch
Confidence 378899999999999999999988886656665566655 467778888554
No 185
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.06 E-value=0.078 Score=33.64 Aligned_cols=58 Identities=14% Similarity=0.075 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCC-HHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 199 TYTAVFEAFVRAQKVDEARGLLQQMKAK----GF-VPD-EKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 199 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~p~-~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
+|+.+-..|...|++++|+..|++..+. |- .|+ ..++..+-..+...|+.+.|.++|+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~ 70 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQ 70 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4455555555555666555555555432 10 111 3344444445555666655555554
No 186
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=93.94 E-value=1.8 Score=31.70 Aligned_cols=103 Identities=15% Similarity=0.003 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHH
Q 043311 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA-YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYT 201 (257)
Q Consensus 123 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~-~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 201 (257)
...-.+=.-+...|++++|..+|+-+... .|.. .-|-.|=-.|-. .|++++|...|........ -|...+-
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~-----~g~~~~AI~aY~~A~~L~~-ddp~~~~ 107 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQA-----QKHWGEAIYAYGRAAQIKI-DAPQAPW 107 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHhcCC-CCchHHH
Confidence 33444445567889999999999999875 4444 444444444455 4559999999998876543 3667777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHH
Q 043311 202 AVFEAFVRAQKVDEARGLLQQMKAK-GFVPDEK 233 (257)
Q Consensus 202 ~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~ 233 (257)
.+=.++...|+.+.|.+.|+..... +-.|...
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~ 140 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAVVRICGEVSEHQ 140 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhccChhHH
Confidence 7888999999999999999988876 4444433
No 187
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=93.90 E-value=2.3 Score=34.20 Aligned_cols=87 Identities=14% Similarity=0.085 Sum_probs=54.9
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcc
Q 043311 98 SKDGLTHEALQLFAQIKDKGHMPDV----VAHTAVIEAYASAGQGKEALRVFMRMLASG--VAPNAYTYAVLIKGLAAAA 171 (257)
Q Consensus 98 ~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~~~~~t~~~ll~~~~~~~ 171 (257)
.+.|++++|...|+.+.+.- |+. ..+--+-.+|...|++++|...|+.+.+.- -......+-.+...+...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 45678888888888887642 332 355566677778888888888888887541 1112233333344455533
Q ss_pred CCcchhHHHHHHHHHHHHhC
Q 043311 172 DGNAKILGDAQKYLMEMVGK 191 (257)
Q Consensus 172 ~~~~~~~~~a~~~~~~m~~~ 191 (257)
..+.|..+|+.+.+.
T Consensus 232 -----~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 232 -----DTAKAKAVYQQVIKK 246 (263)
T ss_pred -----CHHHHHHHHHHHHHH
Confidence 388888888877653
No 188
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=93.81 E-value=0.76 Score=28.08 Aligned_cols=63 Identities=17% Similarity=0.133 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHH
Q 043311 122 VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189 (257)
Q Consensus 122 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~ 189 (257)
..+|..+=..+...|++++|...|++..+.+ +-+...|..+-.++...|+ .+++|.+.++...
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~----~~~~A~~~~~~al 65 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGK----DYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTT----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCc----cHHHHHHHHHHHH
Confidence 3445555555666666666666666655542 2244455555555555220 3566665555543
No 189
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.75 E-value=1.8 Score=30.92 Aligned_cols=88 Identities=17% Similarity=0.093 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHH
Q 043311 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTA 202 (257)
Q Consensus 123 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 202 (257)
.-...+|..+.+.+..+....+++.+...|. .+...++.++..|++... +...+.+.. ..+.....-
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~------~~ll~~l~~------~~~~yd~~~ 74 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP------QKEIERLDN------KSNHYDIEK 74 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH------HHHHHHHHh------ccccCCHHH
Confidence 3445788888888999999999999998874 688899999999998422 333344432 123444555
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 043311 203 VFEAFVRAQKVDEARGLLQQM 223 (257)
Q Consensus 203 li~~~~~~~~~~~a~~~~~~m 223 (257)
+++.|-+.+.++++..++.++
T Consensus 75 ~~~~c~~~~l~~~~~~l~~k~ 95 (140)
T smart00299 75 VGKLCEKAKLYEEAVELYKKD 95 (140)
T ss_pred HHHHHHHcCcHHHHHHHHHhh
Confidence 777777777777777777775
No 190
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.74 E-value=1.6 Score=35.36 Aligned_cols=78 Identities=15% Similarity=0.106 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCH
Q 043311 158 YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA-----KGFVPDE 232 (257)
Q Consensus 158 ~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~ 232 (257)
.++..++..+.. +++.+.+.+.++++.... +-+...|..+|.+|.+.|+...|+..|+.+.+ .|+.|..
T Consensus 154 ~~l~~lae~~~~-----~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~ 227 (280)
T COG3629 154 KALTKLAEALIA-----CGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAP 227 (280)
T ss_pred HHHHHHHHHHHh-----cccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccH
Confidence 355666666766 445788888888877642 34777888888888888888888888887764 4888887
Q ss_pred HHHHHHHHH
Q 043311 233 KAVKEALID 241 (257)
Q Consensus 233 ~t~~~ll~~ 241 (257)
.+.......
T Consensus 228 ~~~~~y~~~ 236 (280)
T COG3629 228 ELRALYEEI 236 (280)
T ss_pred HHHHHHHHH
Confidence 777666665
No 191
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=93.70 E-value=2.5 Score=34.33 Aligned_cols=181 Identities=15% Similarity=0.127 Sum_probs=106.5
Q ss_pred ccccCCCCHHHHHHHHHHHHhCC--CC-Cc-HH----HHHHHHHhcCChHHHHHHHHHHHh----CCCCCC--HHHHHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEG--LT-NN-AV----KMFDALSKDGLTHEALQLFAQIKD----KGHMPD--VVAHTAV 128 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~--~~-p~-~~----~ll~~~~~~~~~~~a~~~~~~m~~----~g~~p~--~~~~~~l 128 (257)
..+...|+++.|.+.|......- .. +. .. ....+| +..++++|.+.|+...+ .|- |+ ...+..+
T Consensus 43 ~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~~y~~~G~-~~~aA~~~~~l 120 (282)
T PF14938_consen 43 NCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKAIEIYREAGR-FSQAAKCLKEL 120 (282)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHHHCT--HHHHHHHHHHH
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHH
Confidence 55667889999988888776421 11 11 11 133344 44488888888776643 232 22 3356666
Q ss_pred HHHHHhc-CChHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCC-----CCH
Q 043311 129 IEAYASA-GQGKEALRVFMRMLAS----GVA-PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR-----PNA 197 (257)
Q Consensus 129 i~~~~~~-~~~~~a~~~~~~m~~~----g~~-~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~-----p~~ 197 (257)
=..|... |++++|.+.|++-... |.. --..++.-+...+.+ .|++++|.++|++....-.. .+.
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~-----l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR-----LGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-----TT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 6777777 8999999999876532 311 113555667777788 44599999999998754222 222
Q ss_pred H-HHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHhhcCCchhhH
Q 043311 198 G-TYTAVFEAFVRAQKVDEARGLLQQMKAK--GFVPD--EKAVKEALIDKRGQGFRGVI 251 (257)
Q Consensus 198 ~-~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~--~~t~~~ll~~~~~~g~~~~~ 251 (257)
. .|-..+-.+...|+...|.+.+++.... ++..+ ......||.+| ..|+.+..
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~-~~~D~e~f 253 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY-EEGDVEAF 253 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH-HTT-CCCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-HhCCHHHH
Confidence 2 2333444667789999999999998754 44333 34445555555 44444443
No 192
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.66 E-value=1.5 Score=38.79 Aligned_cols=149 Identities=15% Similarity=0.177 Sum_probs=92.9
Q ss_pred CHHHHHHHHHHHHhCCCCCcH-H--HHHHHHHhcCChHHHHHHHH--------HHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 043311 70 DPRNLQEIFHKMRTEGLTNNA-V--KMFDALSKDGLTHEALQLFA--------QIKDKGHMPDVVAHTAVIEAYASAGQG 138 (257)
Q Consensus 70 ~~~~a~~~~~~m~~~~~~p~~-~--~ll~~~~~~~~~~~a~~~~~--------~m~~~g~~p~~~~~~~li~~~~~~~~~ 138 (257)
....+..++....+..-.-.. . .++......|+++.|.+++. .+.+.+..|-++ ..+...+.+.++.
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V--~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTV--GAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHH--HHHHHHHHhccCC
Confidence 455566666555543211111 1 35566677899999998888 555545555444 4556667777776
Q ss_pred HHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 043311 139 KEALRVFMRMLAS--GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEA 216 (257)
Q Consensus 139 ~~a~~~~~~m~~~--g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 216 (257)
+.|-+++++-.+. ...+......+++.-.+...-. .|..++|..+++++.+. -++|..+..-++.+|++. +.+.|
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr-~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~-d~eka 510 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLR-HGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL-DPEKA 510 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHh-cCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc-CHHHH
Confidence 7777777665532 2233445555555544433221 36688899999998874 356888888888888887 46777
Q ss_pred HHHHHHH
Q 043311 217 RGLLQQM 223 (257)
Q Consensus 217 ~~~~~~m 223 (257)
..+-..+
T Consensus 511 ~~l~k~L 517 (652)
T KOG2376|consen 511 ESLSKKL 517 (652)
T ss_pred HHHhhcC
Confidence 7776554
No 193
>PLN02789 farnesyltranstransferase
Probab=93.64 E-value=3.6 Score=34.17 Aligned_cols=137 Identities=9% Similarity=-0.020 Sum_probs=81.2
Q ss_pred cCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchh
Q 043311 100 DGLTHEALQLFAQIKDKGHMPDV-VAHTAVIEAYASAG-QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKI 177 (257)
Q Consensus 100 ~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~ 177 (257)
.+..++|+.+.++..+. .|+. .+|+.-=.++.+.| ++++++..++++.+.+-+ +..+|+..-..+.+.+. ..
T Consensus 50 ~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~---~~ 123 (320)
T PLN02789 50 DERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGP---DA 123 (320)
T ss_pred CCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCc---hh
Confidence 45666777777777663 3433 34554444455555 568888888887766433 44556654444444322 11
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 043311 178 LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRG 244 (257)
Q Consensus 178 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 244 (257)
.+.+..+++.+.+.. +-+...|+-.--.+...|+++++++.++++.+.+.. |...|+.....+.+
T Consensus 124 ~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~ 188 (320)
T PLN02789 124 ANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITR 188 (320)
T ss_pred hHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHh
Confidence 355666776666532 225667777667777778888888888888877654 33455554444433
No 194
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=93.58 E-value=3.7 Score=36.59 Aligned_cols=122 Identities=13% Similarity=0.040 Sum_probs=80.4
Q ss_pred hHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcC--------ChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhccC
Q 043311 103 THEALQLFAQIKDKGHMPDV-VAHTAVIEAYASAG--------QGKEALRVFMRMLAS-GVAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 103 ~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~~--------~~~~a~~~~~~m~~~-g~~~~~~t~~~ll~~~~~~~~ 172 (257)
...|..+|++..+. .|+- ..|..+-.++.... ++..+.+........ ....+...|.++--....
T Consensus 358 ~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~--- 432 (517)
T PRK10153 358 LNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALV--- 432 (517)
T ss_pred HHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHh---
Confidence 56789999988874 4653 34444333332221 223344444433222 234455777777555555
Q ss_pred CcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 043311 173 GNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAV 235 (257)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~ 235 (257)
.|++++|...++..... .|+...|..+-..+...|+.++|.+.+++.... .|...||
T Consensus 433 --~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~pt~ 489 (517)
T PRK10153 433 --KGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGENTL 489 (517)
T ss_pred --cCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCchH
Confidence 34599999999998875 478889999999999999999999999998764 3444444
No 195
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.55 E-value=1.1 Score=33.73 Aligned_cols=59 Identities=19% Similarity=0.178 Sum_probs=43.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGHMPD--VVAHTAVIEAYASAGQGKEALRVFMRMLA 150 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 150 (257)
.+-..|.+.|+.+.|.+.|..+.+....+. +..+-.+|+...-.+++..+.....+...
T Consensus 41 ~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 41 DLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 367778888888888888888887755554 34567778888888888887777766554
No 196
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=93.37 E-value=1.3 Score=40.96 Aligned_cols=44 Identities=14% Similarity=0.169 Sum_probs=31.1
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHhcCChHHHHHHHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQ 112 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ll~~~~~~~~~~~a~~~~~~ 112 (257)
....+.|.+++|..+|++.++.++ |=..|-..|.|++|.++-+.
T Consensus 808 vLAieLgMlEeA~~lYr~ckR~DL------lNKlyQs~g~w~eA~eiAE~ 851 (1416)
T KOG3617|consen 808 VLAIELGMLEEALILYRQCKRYDL------LNKLYQSQGMWSEAFEIAET 851 (1416)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHH------HHHHHHhcccHHHHHHHHhh
Confidence 666789999999999999887532 22344556777777776543
No 197
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=93.31 E-value=4.8 Score=37.55 Aligned_cols=141 Identities=20% Similarity=0.110 Sum_probs=73.6
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhH
Q 043311 99 KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKIL 178 (257)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~ 178 (257)
..|-+++|..+|.+-+. |..|=..|-..|+|++|+++-+.=-+-.++- ||-.-...+...+| .
T Consensus 812 eLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~---Tyy~yA~~Lear~D-----i 874 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHLRN---TYYNYAKYLEARRD-----I 874 (1416)
T ss_pred HHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceehhh---hHHHHHHHHHhhcc-----H
Confidence 34555666666655544 3344455666677777777665433333333 33333333333333 5
Q ss_pred HHHHHHHHHHH-----------hC--------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-------------
Q 043311 179 GDAQKYLMEMV-----------GK--------GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK------------- 226 (257)
Q Consensus 179 ~~a~~~~~~m~-----------~~--------g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------------- 226 (257)
+.|.+.|++-. +. .-.-|...|.-.-.-.-..|++|.|+.+|....+.
T Consensus 875 ~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~ 954 (1416)
T KOG3617|consen 875 EAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKT 954 (1416)
T ss_pred HHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCc
Confidence 55555444321 11 00122233333333333457777777777665431
Q ss_pred -------CCCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 227 -------GFVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 227 -------g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
.-.-|......+-+.|...|++.+|..+|-
T Consensus 955 ~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfT 991 (1416)
T KOG3617|consen 955 DKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFT 991 (1416)
T ss_pred hHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 012356667778888888888888887774
No 198
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=93.31 E-value=1.1 Score=27.61 Aligned_cols=54 Identities=19% Similarity=0.130 Sum_probs=26.4
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHh
Q 043311 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190 (257)
Q Consensus 131 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~ 190 (257)
.|.+.+++++|.++++.+...+ +.+...|...-..+.. .|++++|.+.|+...+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~-----~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQ-----LGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHH-----hccHHHHHHHHHHHHH
Confidence 4455555555555555555442 2233444444444444 2225555555555543
No 199
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.94 E-value=3.9 Score=32.49 Aligned_cols=49 Identities=6% Similarity=-0.009 Sum_probs=28.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHhhcCCchhhHHh
Q 043311 205 EAFVRAQKVDEARGLLQQMKAK--GFVPDEKAVKEALIDKRGQGFRGVINI 253 (257)
Q Consensus 205 ~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g~~~~~~~ 253 (257)
+-|.+.|.+..|..-+++|.+. .-.-....+..+..+|..-|..+.|++
T Consensus 175 ryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~ 225 (254)
T COG4105 175 RYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKK 225 (254)
T ss_pred HHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHH
Confidence 4456667777777777777765 111223344455556666666665554
No 200
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=92.92 E-value=3.1 Score=35.92 Aligned_cols=58 Identities=21% Similarity=0.157 Sum_probs=49.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGHMPDV----VAHTAVIEAYASAGQGKEALRVFMRMLAS 151 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 151 (257)
.+-.+|.+.|++++|...|+...+. .|+. .+|..+-.+|.+.|+.++|...|++..+.
T Consensus 80 NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 80 NLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4777889999999999999997774 4664 45899999999999999999999998864
No 201
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=92.83 E-value=2.9 Score=33.88 Aligned_cols=116 Identities=11% Similarity=0.080 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHcCCHHH
Q 043311 138 GKEALRVFMRMLA-SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV-GKGMRPNAGTYTAVFEAFVRAQKVDE 215 (257)
Q Consensus 138 ~~~a~~~~~~m~~-~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~-~~g~~p~~~~~~~li~~~~~~~~~~~ 215 (257)
+.+|+.+|+...- ..+--|..+...+++......+. ....-.++.+-+. ..|-.++..+...+|..+++.++|..
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~---~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENT---KLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhcccc---chhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 4455555552221 22445666666666655442221 1333333333333 23455666666677777777777777
Q ss_pred HHHHHHHHHHC-CCCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 216 ARGLLQQMKAK-GFVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 216 a~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
..++++.-... +-.-|..-|..+|......|+.+.+.++.+
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 77776665544 445566677777777777777766666543
No 202
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.74 E-value=5.6 Score=35.20 Aligned_cols=140 Identities=14% Similarity=0.095 Sum_probs=90.2
Q ss_pred HHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHH
Q 043311 104 HEALQLFAQI-KDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQ 182 (257)
Q Consensus 104 ~~a~~~~~~m-~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~ 182 (257)
....++|-++ .+.+.++|..++..|=-.|--.|++++|.+.|+..++.. +-|...||-|=-.++. +.+-++|.
T Consensus 411 ~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN-----~~~s~EAI 484 (579)
T KOG1125|consen 411 AHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLAN-----GNRSEEAI 484 (579)
T ss_pred HHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcC-----CcccHHHH
Confidence 3445555554 345655677777777777888888888888888887742 3356777777666666 55578888
Q ss_pred HHHHHHHhCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHH---C------CCCCCHHHHHHHHHHhhcCCchhhH
Q 043311 183 KYLMEMVGKGMRPNAG--TYTAVFEAFVRAQKVDEARGLLQQMKA---K------GFVPDEKAVKEALIDKRGQGFRGVI 251 (257)
Q Consensus 183 ~~~~~m~~~g~~p~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~---~------g~~p~~~t~~~ll~~~~~~g~~~~~ 251 (257)
+.|++..+ +.|+-+ =||.-| +|...|.+++|.+.|-+.+. . +..++...|.+|=.++...+..+.+
T Consensus 485 sAY~rALq--LqP~yVR~RyNlgI-S~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 485 SAYNRALQ--LQPGYVRVRYNLGI-SCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred HHHHHHHh--cCCCeeeeehhhhh-hhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 88888776 456543 366444 46777888888887665542 1 2233455666666666555555533
Q ss_pred H
Q 043311 252 N 252 (257)
Q Consensus 252 ~ 252 (257)
.
T Consensus 562 ~ 562 (579)
T KOG1125|consen 562 Q 562 (579)
T ss_pred H
Confidence 3
No 203
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=92.74 E-value=3.3 Score=35.76 Aligned_cols=87 Identities=6% Similarity=-0.085 Sum_probs=58.9
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCc-----HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHhc
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNN-----AVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE--AYASA 135 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~--~~~~~ 135 (257)
..+.+.|++++|...|+...+..-... ...+-.+|.+.|+.++|.+.++...+.+ ...|..+.. .+..-
T Consensus 83 ~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels----n~~f~~i~~DpdL~pl 158 (453)
T PLN03098 83 LSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY----NLKFSTILNDPDLAPF 158 (453)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----chhHHHHHhCcchhhh
Confidence 788899999999999999887543322 3468889999999999999999998841 112221111 01112
Q ss_pred CChHHHHHHHHHHHHCCC
Q 043311 136 GQGKEALRVFMRMLASGV 153 (257)
Q Consensus 136 ~~~~~a~~~~~~m~~~g~ 153 (257)
.+.++..++++...+.|.
T Consensus 159 R~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 159 RASPEFKELQEEARKGGE 176 (453)
T ss_pred cccHHHHHHHHHHHHhCC
Confidence 233466677777777664
No 204
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.74 E-value=1.5 Score=35.96 Aligned_cols=84 Identities=14% Similarity=0.162 Sum_probs=64.7
Q ss_pred CCCCHHHHHHHHHHHHhCC---CCCcH--HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 043311 67 EPTDPRNLQEIFHKMRTEG---LTNNA--VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEA 141 (257)
Q Consensus 67 ~~~~~~~a~~~~~~m~~~~---~~p~~--~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 141 (257)
+..+++.+...+-.++... ..|++ .++++.|.+- +++.++.+...=.+.|+-||.++++.+|+.+.+.+++.+|
T Consensus 76 ~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllky-~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~a 154 (418)
T KOG4570|consen 76 SREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLKY-DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDA 154 (418)
T ss_pred cccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHcc-ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHH
Confidence 3566777777766666532 22332 2567776654 5778999998889999999999999999999999999999
Q ss_pred HHHHHHHHHC
Q 043311 142 LRVFMRMLAS 151 (257)
Q Consensus 142 ~~~~~~m~~~ 151 (257)
.++...|...
T Consensus 155 a~vvt~~~~q 164 (418)
T KOG4570|consen 155 ASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHHH
Confidence 9998888754
No 205
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.69 E-value=1.4 Score=31.72 Aligned_cols=75 Identities=12% Similarity=0.022 Sum_probs=54.4
Q ss_pred ccccCCCCHHHHHHHHHHHHhC-CCCCcHH----HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTE-GLTNNAV----KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ 137 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~----~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 137 (257)
....+.|++++|.+.|+.+... ...+-.. .++.+|.+.++++.|...++.+.+....--..-|--.+.+++.-..
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~ 97 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQ 97 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 4556789999999999999974 2233222 4899999999999999999998875432223556666666655443
No 206
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.52 E-value=7.4 Score=34.71 Aligned_cols=129 Identities=15% Similarity=0.065 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCC
Q 043311 122 VVAHTAVIEAYASAGQGKEALRVFM--------RMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193 (257)
Q Consensus 122 ~~~~~~li~~~~~~~~~~~a~~~~~--------~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~ 193 (257)
..+--.++......|+++.|.+++. .+.+.+-.|-.+.+...+.--.+.++.....++.|...|..-....
T Consensus 376 ~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s- 454 (652)
T KOG2376|consen 376 KVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGS- 454 (652)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccc-
Confidence 4566677778888999999999999 6666555555555444443333333322333455555554432111
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHh
Q 043311 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINI 253 (257)
Q Consensus 194 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~ 253 (257)
.--..++--+..--.+.|+-++|..+++++.+.. .+|..+...++.+|++. +.+.++.
T Consensus 455 ~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~ 512 (652)
T KOG2376|consen 455 IALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAES 512 (652)
T ss_pred hHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHH
Confidence 1111223333333456799999999999999864 57888888888888764 3444443
No 207
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=92.46 E-value=1.6 Score=29.07 Aligned_cols=47 Identities=15% Similarity=0.194 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHH
Q 043311 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189 (257)
Q Consensus 138 ~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~ 189 (257)
.-++.+-++.+....+.|+.....+.+++|-+.+| +..|..+|+..+
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND-----~alAVR~lE~vK 69 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVND-----FALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhh-----HHHHHHHHHHHH
Confidence 34555555555555566666666666666666444 566666665554
No 208
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.26 E-value=5.7 Score=36.42 Aligned_cols=147 Identities=17% Similarity=0.122 Sum_probs=95.7
Q ss_pred CCCCCcHHHHHHHHHhcCChHHH----------HHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 043311 84 EGLTNNAVKMFDALSKDGLTHEA----------LQLFAQIKD-KGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152 (257)
Q Consensus 84 ~~~~p~~~~ll~~~~~~~~~~~a----------~~~~~~m~~-~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 152 (257)
.|..|+..+.-+.|.+....+.. ++++..+.. .|..-..-+.+-.+.-+...|+..+|.++-.+.+
T Consensus 635 ~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk--- 711 (829)
T KOG2280|consen 635 EGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK--- 711 (829)
T ss_pred cccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC---
Confidence 35556655566666665442221 222222222 2333444455566667888899999987776664
Q ss_pred CCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 043311 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232 (257)
Q Consensus 153 ~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 232 (257)
-||-..|-.=+.+++..++ |++-+++-+.+. ...=|..++..|.+.|+.++|.+++-+. .+..
T Consensus 712 -ipdKr~~wLk~~aLa~~~k-----weeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv-----~~l~ 774 (829)
T KOG2280|consen 712 -IPDKRLWWLKLTALADIKK-----WEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRV-----GGLQ 774 (829)
T ss_pred -CcchhhHHHHHHHHHhhhh-----HHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhcc-----CChH
Confidence 7899999999999999444 766665544432 2566788899999999999999998873 2222
Q ss_pred HHHHHHHHHhhcCCchhhHHhh
Q 043311 233 KAVKEALIDKRGQGFRGVINIL 254 (257)
Q Consensus 233 ~t~~~ll~~~~~~g~~~~~~~l 254 (257)
-...+|.+.|++..|.++
T Consensus 775 ----ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 775 ----EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred ----HHHHHHHHhccHHHHHHH
Confidence 456677777777666543
No 209
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=92.24 E-value=0.86 Score=28.69 Aligned_cols=61 Identities=21% Similarity=0.256 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhccCCcchhHHHHHHHHHHHHh----CCC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043311 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMVG----KGM-RPN-AGTYTAVFEAFVRAQKVDEARGLLQQMK 224 (257)
Q Consensus 159 t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~----~g~-~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~ 224 (257)
+|+.+-..|... |++++|...|++..+ .|- .|+ ..+++.+-..|...|++++|.+++++..
T Consensus 7 ~~~~la~~~~~~-----~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYREL-----GRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHT-----T-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444555555552 225555555554432 110 111 2345555666666677777776666543
No 210
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.16 E-value=3.9 Score=30.63 Aligned_cols=132 Identities=17% Similarity=0.176 Sum_probs=86.3
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcch
Q 043311 98 SKDGLTHEALQLFAQIKDKGHMPDVVA-HTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK 176 (257)
Q Consensus 98 ~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~ 176 (257)
.+.+..++|+.-|.++.+.|...-.+. ---+-......|+...|...|++.-.-.-.|-..-=..-+++-.-.-| .|
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD--~g 146 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVD--NG 146 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhc--cc
Confidence 567888999999999988766433322 222333456788999999999998765444443322233333222222 55
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 043311 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231 (257)
Q Consensus 177 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 231 (257)
.++.+..-.+-+...|-+.-...-.+|=-+-.+.|++.+|...|..+.+.-..|-
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~apr 201 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPR 201 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcH
Confidence 5888887777776554444444556777777889999999999999887654453
No 211
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=92.07 E-value=8.9 Score=34.60 Aligned_cols=174 Identities=12% Similarity=0.077 Sum_probs=107.1
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHHHHHHH----HHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAVKMFDA----LSKDGLTHEALQLFAQIKDKGHMP-DVVAHTAVIEAYASAGQ 137 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ll~~----~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~ 137 (257)
..+...+++++|.+.|...... .||...+++- =.+.++++...+......+. .| ....|-.+..++.-.|+
T Consensus 83 l~~R~dK~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~ 158 (700)
T KOG1156|consen 83 LLQRSDKKYDEAIKCYRNALKI--EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGE 158 (700)
T ss_pred HHHhhhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHH
Confidence 3445566777777777766653 3443332221 23445555555555555443 23 34578888889999999
Q ss_pred hHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhccC-CcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 043311 138 GKEALRVFMRMLASG-VAPNAYTYAVLIKGLAAAAD-GNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215 (257)
Q Consensus 138 ~~~a~~~~~~m~~~g-~~~~~~t~~~ll~~~~~~~~-~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 215 (257)
...|..++++..+.- ..|+...|--.....-+..- .+.|..+.|.+.+..-+.. +.-....-.+--.-+.+.+++++
T Consensus 159 y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEe 237 (700)
T KOG1156|consen 159 YKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEE 237 (700)
T ss_pred HHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHh
Confidence 999999999988764 35777666543332222100 1144467777766555432 11122223344456678899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 043311 216 ARGLLQQMKAKGFVPDEKAVKEALIDKR 243 (257)
Q Consensus 216 a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 243 (257)
|..++..+... .||..-|...+..+.
T Consensus 238 A~~~y~~Ll~r--nPdn~~Yy~~l~~~l 263 (700)
T KOG1156|consen 238 AVKVYRRLLER--NPDNLDYYEGLEKAL 263 (700)
T ss_pred HHHHHHHHHhh--CchhHHHHHHHHHHH
Confidence 99999999987 488888887777665
No 212
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.91 E-value=2.6 Score=34.11 Aligned_cols=73 Identities=19% Similarity=0.260 Sum_probs=49.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCHHHHHHHHHH
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA-----SGVAPNAYTYAVLIKG 166 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~~~~~t~~~ll~~ 166 (257)
+...+...|+.+.+.+.++++.+. -+-+...|..+|.+|.+.|+...|...|+++.+ -|+.|...+.....+.
T Consensus 159 lae~~~~~~~~~~~~~~l~~Li~~-dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~~~ 236 (280)
T COG3629 159 LAEALIACGRADAVIEHLERLIEL-DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYEEI 236 (280)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHH
Confidence 455556667777777777776664 234666777777777777777777777777665 3677777666666665
No 213
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=91.78 E-value=2.8 Score=28.22 Aligned_cols=44 Identities=11% Similarity=0.146 Sum_probs=19.8
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHH
Q 043311 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189 (257)
Q Consensus 141 a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~ 189 (257)
..+-++.+....+.|+.....+.+++|.+.+| +..|.++|+.++
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND-----~a~AVR~lE~iK 72 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVND-----FALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT------HHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhh-----HHHHHHHHHHHH
Confidence 34444444444555555555555555555333 555555555444
No 214
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=91.77 E-value=5.5 Score=31.61 Aligned_cols=158 Identities=13% Similarity=0.107 Sum_probs=91.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAH---TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~---~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~ 169 (257)
--..+.+.|++++|.+.|+.+...-..+ ...- -.+..++.+.+++++|...|++..+..-.-...-|.-.+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 3445577899999999999998853222 2222 34567789999999999999999876433233455555555442
Q ss_pred --cc-------------CCcchhHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 043311 170 --AA-------------DGNAKILGDAQKYLMEMVGK----GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230 (257)
Q Consensus 170 --~~-------------~~~~~~~~~a~~~~~~m~~~----g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 230 (257)
.+ +.+......|...|+.+.+. ...|+....-..++--.....+..|.-.+++ ....+
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~---~~y~A 193 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKR---GAYVA 193 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CchHH
Confidence 11 11233345666677776643 2222222233333322222333333333332 23445
Q ss_pred CHHHHHHHHHHhhcCCchhhHHhh
Q 043311 231 DEKAVKEALIDKRGQGFRGVINIL 254 (257)
Q Consensus 231 ~~~t~~~ll~~~~~~g~~~~~~~l 254 (257)
-...+..++.-|-.....+.|.-+
T Consensus 194 A~~r~~~v~~~Yp~t~~~~eal~~ 217 (243)
T PRK10866 194 VVNRVEQMLRDYPDTQATRDALPL 217 (243)
T ss_pred HHHHHHHHHHHCCCCchHHHHHHH
Confidence 667778888888777777666443
No 215
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=91.71 E-value=4.7 Score=30.63 Aligned_cols=127 Identities=17% Similarity=0.177 Sum_probs=84.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHH
Q 043311 90 AVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG---VAPNAYTYAVLIKG 166 (257)
Q Consensus 90 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g---~~~~~~t~~~ll~~ 166 (257)
...|-.++...|+..+|...|.+-..--+--|....-.+-++....++...|..+++.+.+.+ -.|| +.-.+-+.
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~Ll~aR~ 169 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHLLFART 169 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chHHHHHH
Confidence 335788888889999999999888776566677778888888888889999999998887653 3333 34445566
Q ss_pred HHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHHHHHH
Q 043311 167 LAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR----GLLQQMKA 225 (257)
Q Consensus 167 ~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~----~~~~~m~~ 225 (257)
+.. .|..++|+.-|+...+. .|+...-.---....+.|+.+++. ++++...+
T Consensus 170 laa-----~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r 225 (251)
T COG4700 170 LAA-----QGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVVDTAKR 225 (251)
T ss_pred HHh-----cCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 666 44488888888877764 444443222223345666555444 34444443
No 216
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=91.60 E-value=2.3 Score=28.35 Aligned_cols=65 Identities=11% Similarity=0.112 Sum_probs=50.2
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043311 102 LTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167 (257)
Q Consensus 102 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~ 167 (257)
+.-++.+-++.+......|++.+..+.+++|.+-+|+..|.++|+-.+.+ +..+...|..+++-.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lqei 86 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQEI 86 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHHHH
Confidence 34456667777777788999999999999999999999999999988744 222455777777644
No 217
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=91.56 E-value=4.2 Score=29.82 Aligned_cols=90 Identities=14% Similarity=-0.030 Sum_probs=71.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcc
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMP-DVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA 171 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~ 171 (257)
+-..+...|++++|..+|+.+... .| +..-|-.|=-+|-..|++++|...|......+. -|...+-.+-..+...|
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcC
Confidence 444557899999999999999874 34 345566666777788999999999999888763 57788888888888855
Q ss_pred CCcchhHHHHHHHHHHHHh
Q 043311 172 DGNAKILGDAQKYLMEMVG 190 (257)
Q Consensus 172 ~~~~~~~~~a~~~~~~m~~ 190 (257)
+ .+.|.+.|+....
T Consensus 118 ~-----~~~A~~aF~~Ai~ 131 (157)
T PRK15363 118 N-----VCYAIKALKAVVR 131 (157)
T ss_pred C-----HHHHHHHHHHHHH
Confidence 5 9999999987654
No 218
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=91.54 E-value=6.5 Score=31.92 Aligned_cols=103 Identities=17% Similarity=0.132 Sum_probs=81.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCC-HH
Q 043311 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN-AG 198 (257)
Q Consensus 120 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~ 198 (257)
-|...|-.|=..|...|+...|..-|.+-.+- -.+|...+..+-.++....+ ...-.++..+|++.... .|+ ..
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~--~~~ta~a~~ll~~al~~--D~~~ir 228 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAG--QQMTAKARALLRQALAL--DPANIR 228 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcC--CcccHHHHHHHHHHHhc--CCccHH
Confidence 36788999999999999999999999888765 24567777777787777666 44467899999998864 344 44
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 043311 199 TYTAVFEAFVRAQKVDEARGLLQQMKAKG 227 (257)
Q Consensus 199 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g 227 (257)
+-..|-..+...|++.+|...|+.|.+..
T Consensus 229 al~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 45555577888999999999999999873
No 219
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=91.21 E-value=1.5 Score=29.51 Aligned_cols=63 Identities=13% Similarity=0.134 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043311 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167 (257)
Q Consensus 104 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~ 167 (257)
-+..+-++.+....+.|++.+..+.+++|.+.+|+..|.++|+-.+.+ +......|..+++-.
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lqEl 89 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQEL 89 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHHHH
Confidence 346666777777788999999999999999999999999999998854 222233777777744
No 220
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=91.16 E-value=6.3 Score=37.47 Aligned_cols=51 Identities=14% Similarity=0.046 Sum_probs=26.1
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHH
Q 043311 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189 (257)
Q Consensus 133 ~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~ 189 (257)
-+.++...+..-|+.-.+.. +-|...|..+.++|.+ +|++..|.++|....
T Consensus 573 Lea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~-----sGry~~AlKvF~kAs 623 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPE-----SGRYSHALKVFTKAS 623 (1238)
T ss_pred cCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHh-----cCceehHHHhhhhhH
Confidence 33444555555555444432 2255555566666665 444666666665443
No 221
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.04 E-value=0.77 Score=24.21 Aligned_cols=26 Identities=8% Similarity=0.060 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043311 199 TYTAVFEAFVRAQKVDEARGLLQQMK 224 (257)
Q Consensus 199 ~~~~li~~~~~~~~~~~a~~~~~~m~ 224 (257)
+|+.|-..|.+.|++++|.++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888999999999999998854
No 222
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=91.02 E-value=4.3 Score=28.93 Aligned_cols=129 Identities=10% Similarity=0.070 Sum_probs=60.9
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHH
Q 043311 100 DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179 (257)
Q Consensus 100 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~ 179 (257)
.|.+++..++..+.... .+..-||=+|--...+-+=+-.+++++..-+- .|. ..+|++.
T Consensus 15 dG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDi---------------s~C~NlK 73 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDI---------------SKCGNLK 73 (161)
T ss_dssp TT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-G---------------GG-S-TH
T ss_pred hchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc---------------hhhcchH
Confidence 45566666666655543 34455555555555555545544554444321 111 1122244
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhh
Q 043311 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILF 255 (257)
Q Consensus 180 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~ 255 (257)
.....+-.+ ..+...++..++..+..|+-|...+++.++.. +-++++.....+-.||.+-|+...+..++
T Consensus 74 rVi~C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell 143 (161)
T PF09205_consen 74 RVIECYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELL 143 (161)
T ss_dssp HHHHHHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHH
Confidence 444433322 12455566666666777777776666666654 23566666666666777777666666654
No 223
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.87 E-value=7.1 Score=31.76 Aligned_cols=94 Identities=18% Similarity=0.168 Sum_probs=46.8
Q ss_pred cCCCCHHHHHHHHHHHHhCCCCCcHHH----HHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHH
Q 043311 66 EEPTDPRNLQEIFHKMRTEGLTNNAVK----MFDALSKDGLTHEALQLFAQIKDKGHMPD-VVAHTAVIEAYASAGQGKE 140 (257)
Q Consensus 66 ~~~~~~~~a~~~~~~m~~~~~~p~~~~----ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~ 140 (257)
.+.+++++|+..|.+..+. .|+... =-.+|++.|..+.|++=.+.-.+ +.|+ ..+|..|=.+|...|++++
T Consensus 92 m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHH
Confidence 3555666666666655553 222111 23355555655555554444333 2222 2355555555666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHH
Q 043311 141 ALRVFMRMLASGVAPNAYTYAVLIK 165 (257)
Q Consensus 141 a~~~~~~m~~~g~~~~~~t~~~ll~ 165 (257)
|.+-|++-.+ +.|+..+|-.=++
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHHHHH
Confidence 6666555443 4555555544443
No 224
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.63 E-value=5.6 Score=29.87 Aligned_cols=61 Identities=20% Similarity=0.257 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhccCCcchhHHHHHHHHHHHH
Q 043311 124 AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYT--YAVLIKGLAAAADGNAKILGDAQKYLMEMV 189 (257)
Q Consensus 124 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t--~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~ 189 (257)
.+..+-.-|.+.|+.++|++.|.++......+.... +-.+|+.+...++ +..+...+.+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d-----~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGD-----WSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCC-----HHHHHHHHHHHH
Confidence 456666666666666666666666666544433332 1234455555333 566555555544
No 225
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=90.37 E-value=11 Score=32.64 Aligned_cols=146 Identities=16% Similarity=0.135 Sum_probs=72.0
Q ss_pred hcCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCC
Q 043311 99 KDGLTHEALQLFAQIKDKGHM-PD----VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADG 173 (257)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~ 173 (257)
+.++..++.++|...-+.... |. -..-+.+|++|..++ ++.....+..+.+. .| ...|-.+..+...-.
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~n-ld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~-- 91 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNN-LDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYK-- 91 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhh-HHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHH--
Confidence 456666666666666543111 11 222345566665544 44544455444433 11 223333333322111
Q ss_pred cchhHHHHHHHHHHHHhC--CCC------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCHHHH
Q 043311 174 NAKILGDAQKYLMEMVGK--GMR------------PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK----GFVPDEKAV 235 (257)
Q Consensus 174 ~~~~~~~a~~~~~~m~~~--g~~------------p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~~~t~ 235 (257)
.+.+.+|.+.+..-.+. +-. +|...=+..+.+....|+++++..++.+|... ....|..+|
T Consensus 92 -~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 92 -QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred -hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 23355555554444332 211 12222245556666777777777777776643 344677777
Q ss_pred HHHHHHhhcCCchhhH
Q 043311 236 KEALIDKRGQGFRGVI 251 (257)
Q Consensus 236 ~~ll~~~~~~g~~~~~ 251 (257)
+.++-.++++-..+..
T Consensus 171 d~~vlmlsrSYfLEl~ 186 (549)
T PF07079_consen 171 DRAVLMLSRSYFLELK 186 (549)
T ss_pred HHHHHHHhHHHHHHHH
Confidence 7766666555544443
No 226
>PLN02789 farnesyltranstransferase
Probab=90.33 E-value=9.4 Score=31.72 Aligned_cols=196 Identities=12% Similarity=0.050 Sum_probs=113.4
Q ss_pred hhhcccCCCCCCcccccc---ccccCCC-CHHHHHHHHHHHHhCCCCCcHH-H-HHHHHHhcCC--hHHHHHHHHHHHhC
Q 043311 45 KYVNTKSKLPPPYDPFKK---VVDEEPT-DPRNLQEIFHKMRTEGLTNNAV-K-MFDALSKDGL--THEALQLFAQIKDK 116 (257)
Q Consensus 45 ~~~~~~~~~~p~~~~~~~---~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~-~-ll~~~~~~~~--~~~a~~~~~~m~~~ 116 (257)
....+.-.+.|+..+.-. .++...| ++++++..++.+.+........ . ---.+.+.|. .+++.++++.+.+.
T Consensus 58 ~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~ 137 (320)
T PLN02789 58 DLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL 137 (320)
T ss_pred HHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh
Confidence 334444444555444322 3444555 5788888888877754333211 1 1112233444 25667777777653
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC--CcchhHHHHHHHHHHHHhCCCC
Q 043311 117 GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD--GNAKILGDAQKYLMEMVGKGMR 194 (257)
Q Consensus 117 g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~--~~~~~~~~a~~~~~~m~~~g~~ 194 (257)
. .-|..+|+-.-.++.+.|+++++++.++++.+.+.. |...|+-....+.+.+. +.....+...++..+.... -+
T Consensus 138 d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~-~P 214 (320)
T PLN02789 138 D-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA-NP 214 (320)
T ss_pred C-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh-CC
Confidence 2 235678888888888888888888888888877644 66677766655555322 0011234555555444432 12
Q ss_pred CCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 043311 195 PNAGTYTAVFEAFVRA----QKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRG 244 (257)
Q Consensus 195 p~~~~~~~li~~~~~~----~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 244 (257)
-|...|+-+-..+... ++..+|.+.+.+....+ ..+...+..|+..+..
T Consensus 215 ~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 215 RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 3556777777777663 33456777877766644 2356677777777764
No 227
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=89.62 E-value=7.8 Score=29.71 Aligned_cols=59 Identities=24% Similarity=0.292 Sum_probs=44.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGH-MP-DVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~-~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 151 (257)
.-..+...|++++|.+.|+.+...-. .| -....-.+..++.+.|+++.|...|++..+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34556789999999999999987522 11 2345667788999999999999999998865
No 228
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=89.48 E-value=12 Score=31.73 Aligned_cols=163 Identities=13% Similarity=0.059 Sum_probs=99.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGHM---PDVVAHTAVIEAYAS---AGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~---p~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~ 165 (257)
.++-+|....+++...++.+.+...... -...+-.-.--++.+ .|+.++|++++..+....-.++..||..+-+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4777889999999999999999886211 111211122334455 7899999999999776666788889988877
Q ss_pred HHHhc----cCCcchhHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHHc-CCHHHHHHHH----HHHHHCCC---CC
Q 043311 166 GLAAA----ADGNAKILGDAQKYLMEMVGKGMRPNAGT---YTAVFEAFVRA-QKVDEARGLL----QQMKAKGF---VP 230 (257)
Q Consensus 166 ~~~~~----~~~~~~~~~~a~~~~~~m~~~g~~p~~~~---~~~li~~~~~~-~~~~~a~~~~----~~m~~~g~---~p 230 (257)
.|-.. +..+....+.|...|.+--+ +.||..+ +-+|+...... ..-.+..++- ....+.|. ..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 76432 12223446777777765433 3354433 23333322211 0111222222 22223443 45
Q ss_pred CHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 231 DEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 231 ~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
|---+.+++.++.-.|+.+++.+..+
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e 329 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAE 329 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 67778899999999999998887654
No 229
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=89.01 E-value=1.3 Score=35.90 Aligned_cols=47 Identities=17% Similarity=0.271 Sum_probs=38.6
Q ss_pred CCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043311 193 MRPNAGT-YTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239 (257)
Q Consensus 193 ~~p~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll 239 (257)
+.||..+ ||..|...++.||+++|+.+++|.++.|+.--..||..-+
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 4566654 7899999999999999999999999999887666765444
No 230
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=88.98 E-value=7 Score=28.28 Aligned_cols=77 Identities=10% Similarity=0.155 Sum_probs=39.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKG-----HMPDVVAHTAVIEAYASAGQ-GKEALRVFMRMLASGVAPNAYTYAVLIKG 166 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g-----~~p~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~g~~~~~~t~~~ll~~ 166 (257)
++.-....++......+++.+..-. -..+-..|++++.+.++..- ---+..+|.-|++.+.+++..-|-.+|++
T Consensus 45 iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~ 124 (145)
T PF13762_consen 45 ILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKA 124 (145)
T ss_pred HHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3444444455555555555442110 01234456666666655444 33455555666655556666666666665
Q ss_pred HHh
Q 043311 167 LAA 169 (257)
Q Consensus 167 ~~~ 169 (257)
+.+
T Consensus 125 ~l~ 127 (145)
T PF13762_consen 125 ALR 127 (145)
T ss_pred HHc
Confidence 554
No 231
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=88.19 E-value=2.8 Score=23.88 Aligned_cols=35 Identities=26% Similarity=0.372 Sum_probs=27.2
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043311 207 FVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241 (257)
Q Consensus 207 ~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 241 (257)
..+.|-++++..++++|.+.|+..+...|..++.-
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 45667777888888888888888888888777754
No 232
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=87.94 E-value=3.4 Score=29.91 Aligned_cols=64 Identities=13% Similarity=0.249 Sum_probs=51.0
Q ss_pred HHHHHHHHhCCCCCcHH--HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 043311 75 QEIFHKMRTEGLTNNAV--KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQG 138 (257)
Q Consensus 75 ~~~~~~m~~~~~~p~~~--~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 138 (257)
.++...+.+.|++++.. .+++.+.+.+..-.|.++|+++.+.+...+..|--..++.+...|-+
T Consensus 6 ~~~~~~lk~~glr~T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 6 EDAIERLKEAGLRLTPQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 44566777788876654 69999999988889999999999988888877777777888888744
No 233
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=87.62 E-value=22 Score=32.31 Aligned_cols=158 Identities=16% Similarity=0.207 Sum_probs=100.9
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHhcCChHHHHHHHHHHHhC--C------------CCCCHHHHH--
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDK--G------------HMPDVVAHT-- 126 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ll~~~~~~~~~~~a~~~~~~m~~~--g------------~~p~~~~~~-- 126 (257)
.......-.+.+..++..+.+.|+.+-..++...|-.-...+-..++.-.+... | -+|.+..|.
T Consensus 296 svl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y 375 (700)
T KOG1156|consen 296 SVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLY 375 (700)
T ss_pred HHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHH
Confidence 333444455556667777888888777666666665433333223332222211 1 145555444
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043311 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNA-YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFE 205 (257)
Q Consensus 127 ~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~-~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 205 (257)
.++..|-+.|+++.|..+++.-..+ .|+. .-|.+=-+.+...| .++.|..++++..+-+ .||...=.--..
T Consensus 376 ~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G-----~l~eAa~~l~ea~elD-~aDR~INsKcAK 447 (700)
T KOG1156|consen 376 FLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAG-----LLDEAAAWLDEAQELD-TADRAINSKCAK 447 (700)
T ss_pred HHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHhcc-chhHHHHHHHHH
Confidence 5677788899999999999988765 4443 45555557777744 4999999999887642 234333223344
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCC
Q 043311 206 AFVRAQKVDEARGLLQQMKAKGF 228 (257)
Q Consensus 206 ~~~~~~~~~~a~~~~~~m~~~g~ 228 (257)
-..++++.++|.++.....+.|.
T Consensus 448 YmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 448 YMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHccccHHHHHHHHHhhhccc
Confidence 45678999999999999988875
No 234
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=87.56 E-value=8.8 Score=27.77 Aligned_cols=100 Identities=8% Similarity=0.100 Sum_probs=58.5
Q ss_pred HHHHhCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhccCCcchh-HHHHH
Q 043311 111 AQIKDKGHMPDV--VAHTAVIEAYASAGQGKEALRVFMRMLASG-----VAPNAYTYAVLIKGLAAAADGNAKI-LGDAQ 182 (257)
Q Consensus 111 ~~m~~~g~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-----~~~~~~t~~~ll~~~~~~~~~~~~~-~~~a~ 182 (257)
..|++.+..+++ ...|+++.-.+..++......+++.+..-. -..+..+|.+++++..+ ... --.+.
T Consensus 26 ~y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~Slsn-----SsSaK~~~~ 100 (145)
T PF13762_consen 26 PYMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSN-----SSSAKLTSL 100 (145)
T ss_pred HHhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHcc-----ChHHHHHHH
Confidence 334445555554 346777777777777777777777774221 02344556667666644 221 23445
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 043311 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215 (257)
Q Consensus 183 ~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 215 (257)
.+|+-|++.+.+++..-|-.+|.++.+....+.
T Consensus 101 ~Lf~~Lk~~~~~~t~~dy~~li~~~l~g~~~~~ 133 (145)
T PF13762_consen 101 TLFNFLKKNDIEFTPSDYSCLIKAALRGYFHDS 133 (145)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCcc
Confidence 566666666666667777777776665544333
No 235
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.62 E-value=8.6 Score=30.80 Aligned_cols=89 Identities=17% Similarity=0.149 Sum_probs=46.4
Q ss_pred ccccCCCCHHHHHHHHHHHHhCC----CCCcHH-HHHHHHHhcCChHHHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEG----LTNNAV-KMFDALSKDGLTHEALQLFAQIKDK-GHMPD-VVAHTAVIEAYASA 135 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~----~~p~~~-~ll~~~~~~~~~~~a~~~~~~m~~~-g~~p~-~~~~~~li~~~~~~ 135 (257)
.-+...|++..|...|....+.. ..|+.. =|-.++...|++++|-.+|..+.+. +-.|- ...+--|=....+.
T Consensus 149 ~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l 228 (262)
T COG1729 149 LDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRL 228 (262)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHh
Confidence 34445566666666666666532 122222 1555666666666666666666543 11121 13333344445556
Q ss_pred CChHHHHHHHHHHHHC
Q 043311 136 GQGKEALRVFMRMLAS 151 (257)
Q Consensus 136 ~~~~~a~~~~~~m~~~ 151 (257)
|+.++|..+|++..+.
T Consensus 229 ~~~d~A~atl~qv~k~ 244 (262)
T COG1729 229 GNTDEACATLQQVIKR 244 (262)
T ss_pred cCHHHHHHHHHHHHHH
Confidence 6666666666666543
No 236
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.52 E-value=2.6 Score=22.47 Aligned_cols=29 Identities=21% Similarity=0.273 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043311 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKA 225 (257)
Q Consensus 197 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 225 (257)
..+++.|-..|...|++++|..++++...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35678888888889999999998888764
No 237
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=86.50 E-value=3.8 Score=22.56 Aligned_cols=28 Identities=43% Similarity=0.463 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043311 124 AHTAVIEAYASAGQGKEALRVFMRMLAS 151 (257)
Q Consensus 124 ~~~~li~~~~~~~~~~~a~~~~~~m~~~ 151 (257)
+|..+-.+|...|++++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455556666666666666666666654
No 238
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=86.47 E-value=2.4 Score=23.40 Aligned_cols=28 Identities=32% Similarity=0.382 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 043311 199 TYTAVFEAFVRAQKVDEARGLLQQMKAK 226 (257)
Q Consensus 199 ~~~~li~~~~~~~~~~~a~~~~~~m~~~ 226 (257)
++..+-..|...|++++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5677889999999999999999999986
No 239
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=86.27 E-value=0.19 Score=36.07 Aligned_cols=85 Identities=12% Similarity=0.166 Sum_probs=53.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~ 172 (257)
++..+.+.+.+.....+++.+...+..-+....+.++..|++.++.++...+++.. +..-...+++.|.+
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~--- 82 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEK--- 82 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHT---
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHh---
Confidence 66667777777777777777776665566777888888888887767776666511 11333456666666
Q ss_pred CcchhHHHHHHHHHHHH
Q 043311 173 GNAKILGDAQKYLMEMV 189 (257)
Q Consensus 173 ~~~~~~~~a~~~~~~m~ 189 (257)
.|.++.+.-++..+.
T Consensus 83 --~~l~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 83 --HGLYEEAVYLYSKLG 97 (143)
T ss_dssp --TTSHHHHHHHHHCCT
T ss_pred --cchHHHHHHHHHHcc
Confidence 444666666665543
No 240
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=86.07 E-value=2.3 Score=22.33 Aligned_cols=24 Identities=13% Similarity=0.234 Sum_probs=14.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Q 043311 125 HTAVIEAYASAGQGKEALRVFMRM 148 (257)
Q Consensus 125 ~~~li~~~~~~~~~~~a~~~~~~m 148 (257)
|+.|=..|.+.|++++|.++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455556666666666666666663
No 241
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=85.81 E-value=11 Score=27.01 Aligned_cols=135 Identities=16% Similarity=0.128 Sum_probs=71.9
Q ss_pred CCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCChHHHHHH
Q 043311 68 PTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAH---TAVIEAYASAGQGKEALRV 144 (257)
Q Consensus 68 ~~~~~~a~~~~~~m~~~~~~p~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~---~~li~~~~~~~~~~~a~~~ 144 (257)
.|..++..++..+.....-...++=+|--..-.-+-+...++++...+ .-|...+ -.++.+|++.|.
T Consensus 15 dG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis~C~NlKrVi~C~~~~n~------- 84 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDISKCGNLKRVIECYAKRNK------- 84 (161)
T ss_dssp TT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GGG-S-THHHHHHHHHTT--------
T ss_pred hchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHhh---hcCchhhcchHHHHHHHHHhcc-------
Confidence 466777777776666533221111122222222233333444444333 3444332 223444444432
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043311 145 FMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224 (257)
Q Consensus 145 ~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 224 (257)
+...+...+..... .|.-+.-.+++.++.+. -.++....-.+-.+|.+.|+..++.+++.+..
T Consensus 85 -----------~se~vD~ALd~lv~-----~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~AC 147 (161)
T PF09205_consen 85 -----------LSEYVDLALDILVK-----QGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEAC 147 (161)
T ss_dssp -------------HHHHHHHHHHHH-----TT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred -----------hHHHHHHHHHHHHH-----hccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 34455666777777 55577778888887642 35677788888899999999999999999999
Q ss_pred HCCCC
Q 043311 225 AKGFV 229 (257)
Q Consensus 225 ~~g~~ 229 (257)
+.|+.
T Consensus 148 ekG~k 152 (161)
T PF09205_consen 148 EKGLK 152 (161)
T ss_dssp HTT-H
T ss_pred HhchH
Confidence 99874
No 242
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=85.72 E-value=0.23 Score=35.66 Aligned_cols=109 Identities=14% Similarity=0.097 Sum_probs=69.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043311 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEA 206 (257)
Q Consensus 127 ~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 206 (257)
.+|..+.+.+.++....+++.+...+..-+....+.++..|++.+. .+...++++.. +..-...+++.
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~-----~~~l~~~L~~~-------~~yd~~~~~~~ 79 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDP-----YEKLLEFLKTS-------NNYDLDKALRL 79 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTT-----CCHHHHTTTSS-------SSS-CTHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCC-----chHHHHHcccc-------cccCHHHHHHH
Confidence 4577788889999999999999988777789999999999999544 45555555521 11223445555
Q ss_pred HHHcCCHHHHHHHHHHHHHC--CC------------------CCCHHHHHHHHHHhhcCCc
Q 043311 207 FVRAQKVDEARGLLQQMKAK--GF------------------VPDEKAVKEALIDKRGQGF 247 (257)
Q Consensus 207 ~~~~~~~~~a~~~~~~m~~~--g~------------------~p~~~t~~~ll~~~~~~g~ 247 (257)
|.+.|.++++.-++.++... .+ ..|...|..++..|...+.
T Consensus 80 c~~~~l~~~a~~Ly~~~~~~~~al~i~~~~~~~~~a~e~~~~~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 80 CEKHGLYEEAVYLYSKLGNHDEALEILHKLKDYEEAIEYAKKVDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHTTTSHHHHHHHHHCCTTHTTCSSTSSSTHCSCCCTTTGGGCSSSHHHHHHHHHHCTSTC
T ss_pred HHhcchHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
Confidence 56666666666666554321 11 2345666666666666554
No 243
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=85.02 E-value=19 Score=29.27 Aligned_cols=134 Identities=9% Similarity=0.085 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhccCCcchhHH
Q 043311 104 HEALQLFAQIKD-KGHMPDVVAHTAVIEAYASAG--QGKEALRVFMRMLAS-GVAPNAYTYAVLIKGLAAAADGNAKILG 179 (257)
Q Consensus 104 ~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~-g~~~~~~t~~~ll~~~~~~~~~~~~~~~ 179 (257)
.+|+++|+...- ..+--|..+-..+++...... ....-.++.+-+... |-.++..+...+|+.+++.++ |.
T Consensus 145 v~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~d-----W~ 219 (292)
T PF13929_consen 145 VEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRD-----WN 219 (292)
T ss_pred HHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhccc-----HH
Confidence 445555553222 235567777788888777622 344555566666543 568899999999999999666 99
Q ss_pred HHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-----HHCCCCCCHHHHHHHHHHh
Q 043311 180 DAQKYLMEMVGK-GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM-----KAKGFVPDEKAVKEALIDK 242 (257)
Q Consensus 180 ~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m-----~~~g~~p~~~t~~~ll~~~ 242 (257)
+-+++++..... +..-|...|..+|......|+..-..++.++- .+.|+..+...-..+-..+
T Consensus 220 kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 220 KLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 999999887654 56668999999999999999998888777663 3456777766655554443
No 244
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=84.80 E-value=21 Score=29.57 Aligned_cols=30 Identities=17% Similarity=0.068 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 043311 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAK 226 (257)
Q Consensus 197 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 226 (257)
..+|.-+.+.+.+.|.++.|...+.++...
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~ 175 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQL 175 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhcc
Confidence 345666666666666666666666666553
No 245
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=84.66 E-value=20 Score=29.08 Aligned_cols=161 Identities=14% Similarity=0.161 Sum_probs=95.4
Q ss_pred ccCCCCHHHHHHHHHHHHhC--CCCCcHH-H-------HHHHHHhcC-ChHHHHHHHHHHHhC--------CCCCC----
Q 043311 65 DEEPTDPRNLQEIFHKMRTE--GLTNNAV-K-------MFDALSKDG-LTHEALQLFAQIKDK--------GHMPD---- 121 (257)
Q Consensus 65 ~~~~~~~~~a~~~~~~m~~~--~~~p~~~-~-------ll~~~~~~~-~~~~a~~~~~~m~~~--------g~~p~---- 121 (257)
..+.|+++.|.-++.+.... ...|+.. . +-....+.+ +++.|...+++-.+. ...|+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 35678899999988888763 3445443 2 223334556 788887776654332 12233
Q ss_pred -HHHHHHHHHHHHhcCCh---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCH
Q 043311 122 -VVAHTAVIEAYASAGQG---KEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA 197 (257)
Q Consensus 122 -~~~~~~li~~~~~~~~~---~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 197 (257)
..+...+..+|...+.. ++|.++++.+... ..-...+|..-|+.+.+.++ .+.+.+.+..|... +.-..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~-----~~~~~~~L~~mi~~-~~~~e 155 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFD-----EEEYEEILMRMIRS-VDHSE 155 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCC-----hhHHHHHHHHHHHh-ccccc
Confidence 24566667777776654 4455566556433 33336777778888877344 77788888887764 22234
Q ss_pred HHHHHHHHHH---HHcCCHHHHHHHHHHHHHCCCCCCHH
Q 043311 198 GTYTAVFEAF---VRAQKVDEARGLLQQMKAKGFVPDEK 233 (257)
Q Consensus 198 ~~~~~li~~~---~~~~~~~~a~~~~~~m~~~g~~p~~~ 233 (257)
..+..++..+ ... ....+...++++....+.|...
T Consensus 156 ~~~~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~ 193 (278)
T PF08631_consen 156 SNFDSILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSED 193 (278)
T ss_pred chHHHHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCChh
Confidence 4555555554 333 3456667777776665555553
No 246
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=84.49 E-value=27 Score=30.54 Aligned_cols=139 Identities=15% Similarity=0.139 Sum_probs=61.2
Q ss_pred ccccCCCCHHHHHHHHHHHH-hCCCCCcHH-HHHHHHHhcCChHHHHHHHHHHHh-------CC----------CCCCHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMR-TEGLTNNAV-KMFDALSKDGLTHEALQLFAQIKD-------KG----------HMPDVV 123 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~-~~~~~p~~~-~ll~~~~~~~~~~~a~~~~~~m~~-------~g----------~~p~~~ 123 (257)
....-.++++.+.++.+.-. -..+.++.. .++..+-+.|..+.|+.+-.+-.. .| ...+..
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~ 348 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDPE 348 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTHH
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcHH
Confidence 34455678888766665111 122222222 477777777877777776433221 11 123455
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 043311 124 AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAV 203 (257)
Q Consensus 124 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 203 (257)
.|..|=+...+.|+++-|.+.|.+.. -|..++-.|...|+ .+...++.+.....| -+|..
T Consensus 349 ~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~-----~~~L~kl~~~a~~~~------~~n~a 408 (443)
T PF04053_consen 349 KWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGD-----REKLSKLAKIAEERG------DINIA 408 (443)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT------HHHHHHHHHHHHHTT-------HHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCC-----HHHHHHHHHHHHHcc------CHHHH
Confidence 55555555555566555555555443 23334444444333 344444433333322 14444
Q ss_pred HHHHHHcCCHHHHHHHHH
Q 043311 204 FEAFVRAQKVDEARGLLQ 221 (257)
Q Consensus 204 i~~~~~~~~~~~a~~~~~ 221 (257)
+.++.-.|+.++..+++.
T Consensus 409 f~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 409 FQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 445555555555555444
No 247
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=84.13 E-value=11 Score=26.56 Aligned_cols=45 Identities=11% Similarity=0.198 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHH
Q 043311 140 EALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189 (257)
Q Consensus 140 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~ 189 (257)
+..+.++.+...++.|+....-..+++|-+.+| +..|..+|+.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvND-----fa~aVRilE~iK 111 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVND-----FATAVRILEAIK 111 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhcc-----HHHHHHHHHHHH
Confidence 444555555555566666666666666655444 555555555554
No 248
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=84.13 E-value=25 Score=29.92 Aligned_cols=123 Identities=15% Similarity=0.152 Sum_probs=81.2
Q ss_pred HHHHhcCChHHHHHHHHHHHhC-----CC---------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 043311 95 DALSKDGLTHEALQLFAQIKDK-----GH---------MPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160 (257)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~m~~~-----g~---------~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~ 160 (257)
+.|.+.|++..|..-|+..... +. ..-+.+++.+.-+|.+.+++..|.+.=+..+..+ +.|....
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 3667888888888877764322 11 1235567888888899999999988888877664 4455555
Q ss_pred HHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCC-HHHHHHHHHHHHH
Q 043311 161 AVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVR-AQK-VDEARGLLQQMKA 225 (257)
Q Consensus 161 ~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-~~~-~~~a~~~~~~m~~ 225 (257)
---=++|...++ ++.|+..|+.+.+ +.|+-...+.=|..|.+ ..+ .+.-.++|..|-.
T Consensus 295 yRrG~A~l~~~e-----~~~A~~df~ka~k--~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 295 YRRGQALLALGE-----YDLARDDFQKALK--LEPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHhhcc-----HHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445556666444 9999999999886 46766655554444443 333 3344667777754
No 249
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=84.05 E-value=29 Score=30.58 Aligned_cols=78 Identities=21% Similarity=0.179 Sum_probs=50.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCH--HHHHHHH
Q 043311 128 VIEAYASAGQGKEALRVFMRMLASG-VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA--GTYTAVF 204 (257)
Q Consensus 128 li~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~li 204 (257)
+=.++.+.|+.++|.+.|++|.+.. ..-+....-+|+..+.. .+.+.++..++.+..+.. -|.. ..|++.+
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLe-----lq~Yad~q~lL~kYdDi~-lpkSAti~YTaAL 338 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLE-----LQAYADVQALLAKYDDIS-LPKSATICYTAAL 338 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHh-----cCCHHHHHHHHHHhcccc-CCchHHHHHHHHH
Confidence 4444566799999999999987652 22244566778888888 444888888888865422 2333 4577766
Q ss_pred HHHHHcC
Q 043311 205 EAFVRAQ 211 (257)
Q Consensus 205 ~~~~~~~ 211 (257)
--+-..+
T Consensus 339 LkaRav~ 345 (539)
T PF04184_consen 339 LKARAVG 345 (539)
T ss_pred HHHHhhc
Confidence 5444333
No 250
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.00 E-value=20 Score=33.60 Aligned_cols=101 Identities=16% Similarity=0.132 Sum_probs=59.0
Q ss_pred cccccCCCCHHHHHHHHHHHHhCCCCCcHH-HH----HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 043311 62 KVVDEEPTDPRNLQEIFHKMRTEGLTNNAV-KM----FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG 136 (257)
Q Consensus 62 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~l----l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 136 (257)
+..+.+...+..|.++-+ ..+..++.. .+ -+-+.+.|++++|..-|-+-... +.| .-+|.-|.+..
T Consensus 341 L~iL~kK~ly~~Ai~LAk---~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq 411 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLAK---SQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQ 411 (933)
T ss_pred HHHHHHhhhHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHH
Confidence 356666677777766543 334444433 12 33445677777777766554432 112 23455566666
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC
Q 043311 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 137 ~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~ 172 (257)
++.+--.+++.+.+.|+. +...-+.||..|.+.+|
T Consensus 412 ~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd 446 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKD 446 (933)
T ss_pred HHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcc
Confidence 666666777777777655 55666677777777666
No 251
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.78 E-value=9 Score=35.20 Aligned_cols=106 Identities=21% Similarity=0.181 Sum_probs=82.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcc
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA 171 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~ 171 (257)
..+..+...|+-.+|.++-.+++- ||-..|--=+.+++..++|++-+++-+.++ ...-|...+.+|.+
T Consensus 689 dTv~~li~~g~~k~a~ql~~~Fki----pdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~-- 756 (829)
T KOG2280|consen 689 DTVTTLILIGQNKRAEQLKSDFKI----PDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLK-- 756 (829)
T ss_pred HHHHHHHHccchHHHHHHHHhcCC----cchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHh--
Confidence 367777888999999998888765 899999999999999999998766655443 36678889999999
Q ss_pred CCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 043311 172 DGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221 (257)
Q Consensus 172 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 221 (257)
.|+.++|.+++...... . -...+|.+.|++.+|.++--
T Consensus 757 ---~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 757 ---QGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred ---cccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHHH
Confidence 55599999988775321 1 46678888888888877643
No 252
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.74 E-value=18 Score=27.81 Aligned_cols=73 Identities=7% Similarity=-0.012 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHhhcCCchhhHH
Q 043311 179 GDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK---GFVPDEKAVKEALIDKRGQGFRGVIN 252 (257)
Q Consensus 179 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~t~~~ll~~~~~~g~~~~~~ 252 (257)
+.|.+.|-.++..+.- +....-..+..|.-..+.+++..++.+..+. +-.+|...+.+|...+.+.|+.+.|.
T Consensus 123 ~~A~~~fL~~E~~~~l-~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPEL-ETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 5666666667665544 3333334444444455677777776666643 33667777777777777777766653
No 253
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=83.46 E-value=22 Score=28.77 Aligned_cols=185 Identities=10% Similarity=0.052 Sum_probs=104.5
Q ss_pred CCC-CHHHHHHHHHHHHhC--------CCCCcHH--------HHHHHHHhcCChHH---HHHHHHHHHhCCCCCCHHHHH
Q 043311 67 EPT-DPRNLQEIFHKMRTE--------GLTNNAV--------KMFDALSKDGLTHE---ALQLFAQIKDKGHMPDVVAHT 126 (257)
Q Consensus 67 ~~~-~~~~a~~~~~~m~~~--------~~~p~~~--------~ll~~~~~~~~~~~---a~~~~~~m~~~g~~p~~~~~~ 126 (257)
+.+ +++.|..++++..+. ...|+.. .+..+|...+..+. |..+.+.+..... -...+|-
T Consensus 47 ~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~-~~~~~~~ 125 (278)
T PF08631_consen 47 SKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYG-NKPEVFL 125 (278)
T ss_pred HcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC-CCcHHHH
Confidence 444 888877776655442 2233332 26777777776554 5666666654421 1245555
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHH-HHHHHH-
Q 043311 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAG-TYTAVF- 204 (257)
Q Consensus 127 ~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li- 204 (257)
.=|..+.+.++.+++.+++.+|... +.-....|..+++.+-...+ .. .+.+...++.+....+.|... -...++
T Consensus 126 L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l~~i~~l~~--~~-~~~a~~~ld~~l~~r~~~~~~~~~e~~vl 201 (278)
T PF08631_consen 126 LKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSILHHIKQLAE--KS-PELAAFCLDYLLLNRFKSSEDQWLEKLVL 201 (278)
T ss_pred HHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHHHHHHHHHHh--hC-cHHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 6677777799999999999999976 33345566666666643333 11 345555666655444555443 111111
Q ss_pred -HH--HHHc------CCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHH-------hhcCCchhhHHhhhc
Q 043311 205 -EA--FVRA------QKVDEARGLLQQMKAK-GFVPDEKAVKEALID-------KRGQGFRGVINILFG 256 (257)
Q Consensus 205 -~~--~~~~------~~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~-------~~~~g~~~~~~~l~~ 256 (257)
.. ..+. .+++.+.++++..... +.+.+..+-.++..- +.+.+++..|...|+
T Consensus 202 ~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~ 270 (278)
T PF08631_consen 202 TRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYE 270 (278)
T ss_pred HHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 11 1111 1255666666655443 556666665555443 566777777776653
No 254
>PRK15331 chaperone protein SicA; Provisional
Probab=83.43 E-value=16 Score=27.07 Aligned_cols=51 Identities=12% Similarity=0.011 Sum_probs=24.7
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043311 98 SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRML 149 (257)
Q Consensus 98 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 149 (257)
...|++++|..+|..+.-.+. -+..-|..|=.+|-..+++++|...|....
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~ 98 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAF 98 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666555554321 123334444444444555555555554433
No 255
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.33 E-value=18 Score=27.72 Aligned_cols=80 Identities=13% Similarity=0.191 Sum_probs=65.5
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHH
Q 043311 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG---KGMRPNAGTYTAVFEAF 207 (257)
Q Consensus 131 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~---~g~~p~~~~~~~li~~~ 207 (257)
-..+.|| +.|++.|-++...+ ..+....-..+-.|--..| .+++..++....+ .+-.+|...+.+|...|
T Consensus 116 ~Wsr~~d-~~A~~~fL~~E~~~-~l~t~elq~aLAtyY~krD-----~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~ 188 (203)
T PF11207_consen 116 HWSRFGD-QEALRRFLQLEGTP-ELETAELQYALATYYTKRD-----PEKTIQLLLRALELSNPDDNFNPEILKSLASIY 188 (203)
T ss_pred HhhccCc-HHHHHHHHHHcCCC-CCCCHHHHHHHHHHHHccC-----HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 3555565 99999999999886 4588888888888887555 8999999887764 34478899999999999
Q ss_pred HHcCCHHHHH
Q 043311 208 VRAQKVDEAR 217 (257)
Q Consensus 208 ~~~~~~~~a~ 217 (257)
.+.|+.+.|.
T Consensus 189 ~~~~~~e~AY 198 (203)
T PF11207_consen 189 QKLKNYEQAY 198 (203)
T ss_pred HHhcchhhhh
Confidence 9999999875
No 256
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=82.96 E-value=6.2 Score=22.43 Aligned_cols=32 Identities=16% Similarity=0.286 Sum_probs=15.0
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043311 98 SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129 (257)
Q Consensus 98 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 129 (257)
.+.|.++++..+++.|.+.|+-.+...|+.++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34444444444455554444444444444443
No 257
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=82.50 E-value=30 Score=29.60 Aligned_cols=90 Identities=18% Similarity=0.185 Sum_probs=54.5
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHH-----HHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAV-----KMFDALSKDGLTHEALQLFAQIKDKGHMPD-VVAHTAVIEAYASAG 136 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-----~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~ 136 (257)
+...-.|+++.|.+-|+.|... |..- .|.-.--+.|+.+.|..+-+.--+. -|. ...+.++|...+..|
T Consensus 128 Qaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~g 202 (531)
T COG3898 128 QAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEK--APQLPWAARATLEARCAAG 202 (531)
T ss_pred HHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcC
Confidence 4445567777777777777763 2211 1222223456666666555544332 233 357888888889999
Q ss_pred ChHHHHHHHHHHHHCC-CCCCH
Q 043311 137 QGKEALRVFMRMLASG-VAPNA 157 (257)
Q Consensus 137 ~~~~a~~~~~~m~~~g-~~~~~ 157 (257)
+|+.|+++.+.-++.. +.+|.
T Consensus 203 dWd~AlkLvd~~~~~~vie~~~ 224 (531)
T COG3898 203 DWDGALKLVDAQRAAKVIEKDV 224 (531)
T ss_pred ChHHHHHHHHHHHHHHhhchhh
Confidence 9999999888766542 44544
No 258
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=82.19 E-value=4.4 Score=21.48 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043311 123 VAHTAVIEAYASAGQGKEALRVFMRML 149 (257)
Q Consensus 123 ~~~~~li~~~~~~~~~~~a~~~~~~m~ 149 (257)
.+++.|-..|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 456667777777777777777776654
No 259
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.68 E-value=12 Score=34.90 Aligned_cols=116 Identities=19% Similarity=0.327 Sum_probs=75.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA----SAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~----~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~ 167 (257)
+-|+.+++-..++.|..+-+.-. .|..+-..++..|+ ..|++++|...|-+-... ++|.. +|+-|
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~~-----~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s~-----Vi~kf 407 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQH-----LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPSE-----VIKKF 407 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChHH-----HHHHh
Confidence 46788888888888877655422 34555555555554 468888888887766543 44433 33434
Q ss_pred HhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043311 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224 (257)
Q Consensus 168 ~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 224 (257)
.. +.++..-..+++.+.+.|+. +..+-+.|+.+|.+.++.++..++.+.-.
T Consensus 408 Ld-----aq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 408 LD-----AQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred cC-----HHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 33 45566667778888877765 55566778888888887777666665544
No 260
>PRK15331 chaperone protein SicA; Provisional
Probab=81.45 E-value=19 Score=26.64 Aligned_cols=88 Identities=13% Similarity=-0.029 Sum_probs=58.7
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 043311 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211 (257)
Q Consensus 132 ~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 211 (257)
+-..|++++|..+|+-+.-.+.. |..-|..|-..|-. .+.+++|..+|...-..+..-... +=-.-.+|...|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~-----~k~y~~Ai~~Y~~A~~l~~~dp~p-~f~agqC~l~l~ 119 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQL-----KKQFQKACDLYAVAFTLLKNDYRP-VFFTGQCQLLMR 119 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHcccCCCCc-cchHHHHHHHhC
Confidence 55679999999999998875422 34434444444444 455999999887654332221111 222457788999
Q ss_pred CHHHHHHHHHHHHHC
Q 043311 212 KVDEARGLLQQMKAK 226 (257)
Q Consensus 212 ~~~~a~~~~~~m~~~ 226 (257)
+.+.|...|+...+.
T Consensus 120 ~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 120 KAAKARQCFELVNER 134 (165)
T ss_pred CHHHHHHHHHHHHhC
Confidence 999999999998873
No 261
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=81.26 E-value=27 Score=30.76 Aligned_cols=117 Identities=15% Similarity=0.171 Sum_probs=63.6
Q ss_pred cCChHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhH
Q 043311 100 DGLTHE-ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKIL 178 (257)
Q Consensus 100 ~~~~~~-a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~ 178 (257)
.|++-. ..++|.-++...-.|+.+..-+.| +...|+++.+++.+....+. +.....+-.++++...+ .|+|
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~-----l~r~ 373 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHG-----LARW 373 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhc-----hhhH
Confidence 444433 345666666654455554444433 45567777777666554433 34455566666666666 4447
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043311 179 GDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225 (257)
Q Consensus 179 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 225 (257)
+.|..+-..|....++ |...........-..|-+|++.-.+++...
T Consensus 374 ~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 374 REALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLL 419 (831)
T ss_pred HHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhc
Confidence 7777776666655444 223222222233344556666666666543
No 262
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=80.62 E-value=1.6 Score=30.92 Aligned_cols=28 Identities=25% Similarity=0.590 Sum_probs=13.3
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043311 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130 (257)
Q Consensus 101 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 130 (257)
|.-.+|..||..|.++|-.|| .|+.|+.
T Consensus 109 gsk~DaY~VF~kML~~G~pPd--dW~~Ll~ 136 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD--DWDALLK 136 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc--cHHHHHH
Confidence 333445555555555555444 2444443
No 263
>PRK13342 recombination factor protein RarA; Reviewed
Probab=80.31 E-value=38 Score=29.28 Aligned_cols=71 Identities=21% Similarity=0.182 Sum_probs=53.6
Q ss_pred HHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCC
Q 043311 124 AHTAVIEAYAS---AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194 (257)
Q Consensus 124 ~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~ 194 (257)
.+..++.++.+ .++.+.|+.++..|.+.|..|....--.++.++...|-.+......|...++..+.-|++
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~g~p 302 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERIGMP 302 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHhCCc
Confidence 34556666666 378999999999999999888887777777777776655555677777777777776753
No 264
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=80.28 E-value=30 Score=28.11 Aligned_cols=92 Identities=13% Similarity=0.016 Sum_probs=45.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCC
Q 043311 94 FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADG 173 (257)
Q Consensus 94 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~ 173 (257)
|.++...++|.++....-+--+..-+....+...-|-.|+|.++...+.++-..=.+..-.-+.-.|.++...|..+---
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 56666666666655433222222222233444445555667776666666655544321111223366655555442222
Q ss_pred cchhHHHHHHHH
Q 043311 174 NAKILGDAQKYL 185 (257)
Q Consensus 174 ~~~~~~~a~~~~ 185 (257)
-.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 235566666655
No 265
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=80.22 E-value=59 Score=31.46 Aligned_cols=136 Identities=14% Similarity=0.086 Sum_probs=85.0
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcch
Q 043311 97 LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK 176 (257)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~ 176 (257)
|+...+...|.+.|+...+-. ..|...+...-+.|+...+++.|+.+.-.--+. -+.-...+|-.-.+... .+.+
T Consensus 502 Yrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qk-a~a~~~k~nW~~rG~yy---Lea~ 576 (1238)
T KOG1127|consen 502 YRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQK-APAFACKENWVQRGPYY---LEAH 576 (1238)
T ss_pred HHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhh-chHHHHHhhhhhccccc---cCcc
Confidence 333334455666666555421 135567888899999999999998883222222 11122223322222111 2355
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043311 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241 (257)
Q Consensus 177 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 241 (257)
++..+..-|+.-.... +-|...|..+.++|.+.|+...|.++|.+... ++|+ .+|.....+
T Consensus 577 n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~-s~y~~fk~A 637 (1238)
T KOG1127|consen 577 NLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPL-SKYGRFKEA 637 (1238)
T ss_pred chhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcH-hHHHHHHHH
Confidence 6777777777765432 33778999999999999999999999998765 4666 355555544
No 266
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=80.21 E-value=23 Score=31.22 Aligned_cols=115 Identities=15% Similarity=0.221 Sum_probs=76.4
Q ss_pred cccccccccCCCCHHHHHHHHHHHHhCC---CCCcH-----------------H-------HHHHHHHhcCChHHHHHHH
Q 043311 58 DPFKKVVDEEPTDPRNLQEIFHKMRTEG---LTNNA-----------------V-------KMFDALSKDGLTHEALQLF 110 (257)
Q Consensus 58 ~~~~~~~~~~~~~~~~a~~~~~~m~~~~---~~p~~-----------------~-------~ll~~~~~~~~~~~a~~~~ 110 (257)
+.|.+.+-.......++.++|++..+.| +..+. . .+-.++-+.|+.++|.+.|
T Consensus 203 dAYILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~ 282 (539)
T PF04184_consen 203 DAYILLAEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMF 282 (539)
T ss_pred HHHhhcccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHH
Confidence 3333344445667888888888776522 11110 0 1555667889999999999
Q ss_pred HHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhccC
Q 043311 111 AQIKDKG-HMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGV-APNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 111 ~~m~~~g-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~t~~~ll~~~~~~~~ 172 (257)
.+|.+.. ..-+..+...||.++...+.+.++..++.+-.+-.. +--..+|+..+--.-..+|
T Consensus 283 rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d 346 (539)
T PF04184_consen 283 RDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGD 346 (539)
T ss_pred HHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhcc
Confidence 9997643 223455888999999999999999999988754322 2234778876654444333
No 267
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=80.11 E-value=22 Score=32.52 Aligned_cols=67 Identities=21% Similarity=0.190 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-----------HHHHHHHHhhcCC
Q 043311 178 LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK-----------AVKEALIDKRGQG 246 (257)
Q Consensus 178 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-----------t~~~ll~~~~~~g 246 (257)
+..|-++|+.|-+ .-.+++..+..++|++|..+-++.-+ ..||.. -|..-=.++.+.|
T Consensus 763 ~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrFeEAqkAfhkAG 831 (1081)
T KOG1538|consen 763 PGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRFEEAQKAFHKAG 831 (1081)
T ss_pred cchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhhhHHHHHHHHHHhc
Confidence 5566666666532 23466777888888888888776543 333321 2222334555666
Q ss_pred chhhHHhhh
Q 043311 247 FRGVINILF 255 (257)
Q Consensus 247 ~~~~~~~l~ 255 (257)
...+|.+++
T Consensus 832 r~~EA~~vL 840 (1081)
T KOG1538|consen 832 RQREAVQVL 840 (1081)
T ss_pred chHHHHHHH
Confidence 655555544
No 268
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=80.08 E-value=36 Score=28.96 Aligned_cols=163 Identities=15% Similarity=0.134 Sum_probs=103.0
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCC--cHH----HHHHHHHh---cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTN--NAV----KMFDALSK---DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~----~ll~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 133 (257)
..|....+++...++.+.+....... +.. ...-++.+ .|+.++|.+++..+......++..+|..+-+.|-
T Consensus 149 lSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyK 228 (374)
T PF13281_consen 149 LSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYK 228 (374)
T ss_pred HHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 67889999999999999999864221 111 23445556 8999999999999766667788888877766653
Q ss_pred hc---------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCC--cchhHHHHHHHHHHHH-hCCCC---CCHH
Q 043311 134 SA---------GQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADG--NAKILGDAQKYLMEMV-GKGMR---PNAG 198 (257)
Q Consensus 134 ~~---------~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~--~~~~~~~a~~~~~~m~-~~g~~---p~~~ 198 (257)
.. ...++|.+.|.+--+ +.||.++--.+...+.-.|.. .........-.+..+. +.|.. .|-=
T Consensus 229 D~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYW 306 (374)
T PF13281_consen 229 DLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYW 306 (374)
T ss_pred HHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHH
Confidence 31 236777777775544 345554433333333333321 1111122222223322 33332 2333
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 043311 199 TYTAVFEAFVRAQKVDEARGLLQQMKAKG 227 (257)
Q Consensus 199 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g 227 (257)
-+.+++.+++-.|+.++|.+..++|....
T Consensus 307 d~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 307 DVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 46889999999999999999999999763
No 269
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=79.83 E-value=14 Score=25.21 Aligned_cols=42 Identities=19% Similarity=0.262 Sum_probs=33.4
Q ss_pred chhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043311 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225 (257)
Q Consensus 175 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 225 (257)
...++++++.+.+ ..-|..|+.-|...|.+.+|.+++.+..+
T Consensus 26 ~C~~~~~e~~L~~---------~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 26 YCDLEEVEEVLKE---------HGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred cCCHHHHHHHHHH---------cCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 4446777666533 34688999999999999999999999987
No 270
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=79.67 E-value=2 Score=30.46 Aligned_cols=33 Identities=18% Similarity=0.231 Sum_probs=26.0
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 043311 208 VRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDK 242 (257)
Q Consensus 208 ~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 242 (257)
-+.|.-.+|..+|++|.++|-.|| .|+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 355677789999999999998888 577777665
No 271
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=79.64 E-value=32 Score=28.05 Aligned_cols=104 Identities=14% Similarity=0.071 Sum_probs=73.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDK-GHMPDVVAHTAVIEAYAS---AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~ 167 (257)
-|-..|...|+.+.|..-|..-.+- |- +...+..+-.++.. ..+..++..+|++..+.+ +-|+.+-..+-..+
T Consensus 161 ~Lg~~ym~~~~~~~A~~AY~~A~rL~g~--n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~lLA~~a 237 (287)
T COG4235 161 LLGRAYMALGRASDALLAYRNALRLAGD--NPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALSLLAFAA 237 (287)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHHHHHHHH
Confidence 4788999999999999999988764 33 33444443333322 235688999999999864 34666777777777
Q ss_pred HhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043311 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFE 205 (257)
Q Consensus 168 ~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 205 (257)
.. .|++..|...|+.|.+. -|....+..+|+
T Consensus 238 fe-----~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie 268 (287)
T COG4235 238 FE-----QGDYAEAAAAWQMLLDL--LPADDPRRSLIE 268 (287)
T ss_pred HH-----cccHHHHHHHHHHHHhc--CCCCCchHHHHH
Confidence 88 55599999999999975 344445555554
No 272
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=79.58 E-value=11 Score=24.53 Aligned_cols=44 Identities=9% Similarity=0.112 Sum_probs=32.4
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043311 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151 (257)
Q Consensus 108 ~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 151 (257)
++|+..+..|+..|..+|-.++..+.-+-..+..+++++.|...
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s~ 72 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCSG 72 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHcc
Confidence 67777777777777777777777777777777777777777643
No 273
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=79.33 E-value=37 Score=28.59 Aligned_cols=188 Identities=13% Similarity=0.098 Sum_probs=103.7
Q ss_pred hhcccCCCCccchhhcccCCCCCCcccccc---ccccCCCCHHHHHHHHHHHHhCCCCCcH--HHHHHHHHhcCChHHHH
Q 043311 33 RSLSSSSDQPTKKYVNTKSKLPPPYDPFKK---VVDEEPTDPRNLQEIFHKMRTEGLTNNA--VKMFDALSKDGLTHEAL 107 (257)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~---~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~ll~~~~~~~~~~~a~ 107 (257)
....+++-.-+..+......+.|=...+-. ..+...|++..|..=++...+.....+. ..+-..+...|+.+.++
T Consensus 164 s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL 243 (504)
T KOG0624|consen 164 SASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSL 243 (504)
T ss_pred HHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHH
Confidence 334444444444554444445443322222 6677788888777655555543222221 13666777888888888
Q ss_pred HHHHHHHhCCCCCCHHHH----HHH---------HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCc
Q 043311 108 QLFAQIKDKGHMPDVVAH----TAV---------IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174 (257)
Q Consensus 108 ~~~~~m~~~g~~p~~~~~----~~l---------i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~ 174 (257)
...++..+ +.||.-.+ -.| +......++|.++.+-.+...+..-.....+|+..=..|.....
T Consensus 244 ~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~-- 319 (504)
T KOG0624|consen 244 KEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYRE-- 319 (504)
T ss_pred HHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccc--
Confidence 77777666 34654321 111 22234456677777777766655333234444432222211111
Q ss_pred chhHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 043311 175 AKILGDAQKYLMEMVGKGMRPN-AGTYTAVFEAFVRAQKVDEARGLLQQMKAK 226 (257)
Q Consensus 175 ~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 226 (257)
.+++.+|.+.-.+..+ +.|| ..++.-=..+|....++|.|+.=|+...+.
T Consensus 320 d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 320 DEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred cCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 4557776665555543 3454 667766677777777888888777776653
No 274
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=78.73 E-value=15 Score=27.39 Aligned_cols=62 Identities=6% Similarity=0.033 Sum_probs=48.1
Q ss_pred HHHHhCCCCCcHH--HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 043311 79 HKMRTEGLTNNAV--KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140 (257)
Q Consensus 79 ~~m~~~~~~p~~~--~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 140 (257)
+.+.+.|+..+.. .++..+...+..-.|.++++.+.+.+..++..|-...|..+...|-+.+
T Consensus 15 ~~L~~~GlR~T~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 15 KLCAQRNVRLTPQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 4455678776654 6888888777777899999999999888888887777888888886543
No 275
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=78.69 E-value=4.7 Score=24.73 Aligned_cols=58 Identities=9% Similarity=0.095 Sum_probs=42.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhH
Q 043311 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVI 251 (257)
Q Consensus 193 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~ 251 (257)
+.|+...++.+++.+++..-+++++.++.+..+.|. .+..+|.--++.+++..+...+
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaReQF~~Ra 61 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAREQFLKRA 61 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 356777888888888888888888888888888885 5677777777777776554443
No 276
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=78.54 E-value=8.6 Score=28.63 Aligned_cols=64 Identities=17% Similarity=0.088 Sum_probs=47.9
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhH
Q 043311 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVI 251 (257)
Q Consensus 187 ~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~ 251 (257)
.+...|++++..=. ++++.....++.-.|.++++++.+.|..++..|....|..+.+.|.....
T Consensus 16 ~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~~ 79 (169)
T PRK11639 16 LCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHKV 79 (169)
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEEE
Confidence 35567877665443 45555555667788999999999998888889998999888888876544
No 277
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=78.47 E-value=37 Score=28.12 Aligned_cols=67 Identities=13% Similarity=-0.013 Sum_probs=49.1
Q ss_pred CCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043311 154 APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP---NAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225 (257)
Q Consensus 154 ~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 225 (257)
.....+|..+.+.+.+ .|.++.|...+..+...+... +....-.-.......|+..+|...+++..+
T Consensus 143 ~~~~~~~l~~a~~aRk-----~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 143 EELAETWLKFAKLARK-----AGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred hHHHHHHHHHHHHHHH-----CCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4456788889999988 566999999999887643211 233333445666788999999999988887
No 278
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.31 E-value=39 Score=28.34 Aligned_cols=118 Identities=15% Similarity=0.147 Sum_probs=60.4
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhccCCcc
Q 043311 99 KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS---GVAPNAYTYAVLIKGLAAAADGNA 175 (257)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~~~~~t~~~ll~~~~~~~~~~~ 175 (257)
..|...+|...|+++.+. .+.|...++-.=++|.-.|+.+.-...+++..-+ +++-.++.-...--++.. +
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E-----~ 188 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE-----C 188 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH-----h
Confidence 355566666666666654 4556677777777777777777777777766633 222112222222222233 4
Q ss_pred hhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043311 176 KILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQKVDEARGLLQQMK 224 (257)
Q Consensus 176 ~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 224 (257)
|.+++|++.-++-.+- .| |.=.-.+.--..--.|++.++.++..+-.
T Consensus 189 g~y~dAEk~A~ralqi--N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te 236 (491)
T KOG2610|consen 189 GIYDDAEKQADRALQI--NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTE 236 (491)
T ss_pred ccchhHHHHHHhhccC--CCcchHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 4466666555444321 11 22222233333334566666666655544
No 279
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=77.82 E-value=40 Score=28.11 Aligned_cols=154 Identities=14% Similarity=0.158 Sum_probs=80.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCcHH------------HHHHHHHhcCC--hHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 043311 69 TDPRNLQEIFHKMRTEGLTNNAV------------KMFDALSKDGL--THEALQLFAQIKDK-GHMPDVVAHTAVIEAYA 133 (257)
Q Consensus 69 ~~~~~a~~~~~~m~~~~~~p~~~------------~ll~~~~~~~~--~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~ 133 (257)
++.+....+++.+...+..|-.. .++....+.+. +++-.+..++.+++ |-.--...+-..-.-|+
T Consensus 36 ~~~~~~e~l~~~Ird~~Map~Ye~lce~~~i~~D~~~l~~m~~~neeki~eld~~iedaeenlGE~ev~ea~~~kaeYyc 115 (393)
T KOG0687|consen 36 QKAAAREKLLAAIRDEDMAPLYEYLCESLVIKLDQDLLNSMKKANEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYC 115 (393)
T ss_pred cCHHHHHHHHHHHHhcccchHHHHHHhhcceeccHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 46666677777777777777653 25555554432 22223333333332 22122344555556688
Q ss_pred hcCChHHHHHHHHHHHH----CCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 043311 134 SAGQGKEALRVFMRMLA----SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209 (257)
Q Consensus 134 ~~~~~~~a~~~~~~m~~----~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 209 (257)
+.||.+.|++.++...+ .|.+.|+..+.+-+-.+....+.-...+++|..++++=-+..-+--..+|.-+-. ..
T Consensus 116 qigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~--ms 193 (393)
T KOG0687|consen 116 QIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYC--MS 193 (393)
T ss_pred HhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHH--HH
Confidence 99999999988877654 3778888777766654433211111223344433332211111112234544433 23
Q ss_pred cCCHHHHHHHHHHHH
Q 043311 210 AQKVDEARGLLQQMK 224 (257)
Q Consensus 210 ~~~~~~a~~~~~~m~ 224 (257)
.+++.+|-.+|-+..
T Consensus 194 vR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 194 VRNFKEAADLFLDSV 208 (393)
T ss_pred HHhHHHHHHHHHHHc
Confidence 346777777766654
No 280
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=77.35 E-value=51 Score=29.10 Aligned_cols=155 Identities=14% Similarity=0.125 Sum_probs=99.0
Q ss_pred ccccCCCCHHHHHHHHHHHHhCC-CCCcHHH--------HHHHHH----hcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEG-LTNNAVK--------MFDALS----KDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~--------ll~~~~----~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 129 (257)
....=.||-+.+++.+....+.+ +.-.... ++..++ ...+.+.+.+++..+.++ -|+...|...-
T Consensus 196 ~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~~ 273 (468)
T PF10300_consen 196 SFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFFE 273 (468)
T ss_pred hhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 44555689999999988776633 3222221 222222 245678899999999885 57777775544
Q ss_pred H-HHHhcCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043311 130 E-AYASAGQGKEALRVFMRMLASG---VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFE 205 (257)
Q Consensus 130 ~-~~~~~~~~~~a~~~~~~m~~~g---~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 205 (257)
. .+...|++++|.+.|++..... -+.....|--+...+.. .++|++|.+.|..+.+.. .-+..+|.-+..
T Consensus 274 gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~-----~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 274 GRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF-----QHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH-----HchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 3 3566799999999999755321 12223344445555666 344999999999998631 224555665555
Q ss_pred HHH-HcCCH-------HHHHHHHHHHHH
Q 043311 206 AFV-RAQKV-------DEARGLLQQMKA 225 (257)
Q Consensus 206 ~~~-~~~~~-------~~a~~~~~~m~~ 225 (257)
+|. ..|+. ++|.++|.+...
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 443 35666 888888888753
No 281
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=77.15 E-value=13 Score=26.87 Aligned_cols=67 Identities=18% Similarity=0.153 Sum_probs=52.7
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhh
Q 043311 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGV 250 (257)
Q Consensus 183 ~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 250 (257)
.+.+.+.+.|++++.. =..+++.....++.-.|.++++++.+.+...+..|....|..+...|.+..
T Consensus 7 ~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv~~ 73 (145)
T COG0735 7 DAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLVHR 73 (145)
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCEEE
Confidence 3555677788876654 334667777777779999999999999888889999999999998887654
No 282
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=76.31 E-value=67 Score=29.95 Aligned_cols=123 Identities=15% Similarity=0.058 Sum_probs=86.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCH-HHHHHH
Q 043311 125 HTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA-GTYTAV 203 (257)
Q Consensus 125 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l 203 (257)
|...-..+.+.+..++|...+.+..+.. ......|.-.=..+.. .|.+++|.+.|..-.. +.|+. ....++
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~-----~~~~~EA~~af~~Al~--ldP~hv~s~~Al 724 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEV-----KGQLEEAKEAFLVALA--LDPDHVPSMTAL 724 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHH-----HHhhHHHHHHHHHHHh--cCCCCcHHHHHH
Confidence 4455566777777788776666665432 2233333333223333 4558899988887664 45654 567888
Q ss_pred HHHHHHcCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 204 FEAFVRAQKVDEARG--LLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 204 i~~~~~~~~~~~a~~--~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
-..+.+.|+...+.. ++.++.+.+ .-|...|..+=......|+.+.|...|.
T Consensus 725 a~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 725 AELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQ 778 (799)
T ss_pred HHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHH
Confidence 899999998888888 999998876 4588899999999999999998877663
No 283
>PHA02875 ankyrin repeat protein; Provisional
Probab=76.12 E-value=15 Score=31.53 Aligned_cols=192 Identities=9% Similarity=0.110 Sum_probs=94.4
Q ss_pred cccCCCCccchhhcccCCCCCCccc---ccc-ccccCCCCHHHHHHHHHHHHhCCCCCcHH-----HHHHHHHhcCChHH
Q 043311 35 LSSSSDQPTKKYVNTKSKLPPPYDP---FKK-VVDEEPTDPRNLQEIFHKMRTEGLTNNAV-----KMFDALSKDGLTHE 105 (257)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~p~~~~---~~~-~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-----~ll~~~~~~~~~~~ 105 (257)
...+..+..+.++.. +..|+... +.. ..++..|+.+.+ +.+.+.|..|+.. +.+-..++.|+.+.
T Consensus 10 ~~~g~~~iv~~Ll~~--g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~ 83 (413)
T PHA02875 10 ILFGELDIARRLLDI--GINPNFEIYDGISPIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDIESELHDAVEEGDVKA 83 (413)
T ss_pred HHhCCHHHHHHHHHC--CCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCccccCCCcccHHHHHHHCCCHHH
Confidence 344455444444443 33343322 222 455566776544 4444556555432 45556667788766
Q ss_pred HHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhccCCcchhH
Q 043311 106 ALQLFAQIKDKGHMPD----VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAY---TYAVLIKGLAAAADGNAKIL 178 (257)
Q Consensus 106 a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~---t~~~ll~~~~~~~~~~~~~~ 178 (257)
+..+++ .|...+ ..-+ +.+...+..|+.+ +++.+.+.|..|+.. -.+.+. ..+..|+ .
T Consensus 84 v~~Ll~----~~~~~~~~~~~~g~-tpL~~A~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh-~A~~~~~-----~ 148 (413)
T PHA02875 84 VEELLD----LGKFADDVFYKDGM-TPLHLATILKKLD----IMKLLIARGADPDIPNTDKFSPLH-LAVMMGD-----I 148 (413)
T ss_pred HHHHHH----cCCcccccccCCCC-CHHHHHHHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHH-HHHHcCC-----H
Confidence 555443 332221 1122 3334444566653 455556667665442 223333 3344333 4
Q ss_pred HHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHhhcCCchhhHH
Q 043311 179 GDAQKYLMEMVGKGMRPNAG---TYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAV---KEALIDKRGQGFRGVIN 252 (257)
Q Consensus 179 ~~a~~~~~~m~~~g~~p~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~---~~ll~~~~~~g~~~~~~ 252 (257)
+.+. .+.+.|..++.. -++. +...+..|+.+ +++.+.+.|..|+...- .+.+......|..+.+.
T Consensus 149 ~~v~----~Ll~~g~~~~~~d~~g~Tp-L~~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~ 219 (413)
T PHA02875 149 KGIE----LLIDHKACLDIEDCCGCTP-LIIAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVR 219 (413)
T ss_pred HHHH----HHHhcCCCCCCCCCCCCCH-HHHHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHH
Confidence 4433 344455544432 2333 33445566655 44555667777664332 24555455677777777
Q ss_pred hhhc
Q 043311 253 ILFG 256 (257)
Q Consensus 253 ~l~~ 256 (257)
-+++
T Consensus 220 ~Ll~ 223 (413)
T PHA02875 220 LFIK 223 (413)
T ss_pred HHHH
Confidence 6654
No 284
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.01 E-value=39 Score=27.15 Aligned_cols=95 Identities=26% Similarity=0.291 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhC-CCCCCH-
Q 043311 124 AHTAVIEAYASAGQGKEALRVFMRMLASG----VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK-GMRPNA- 197 (257)
Q Consensus 124 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g----~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~-g~~p~~- 197 (257)
.|+.-+.. .+.|++.+|..-|....+.. ..||..-| |-+.+...|+ +++|..+|..+.+. +-.|..
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~-----y~~Aa~~f~~~~k~~P~s~KAp 215 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGD-----YEDAAYIFARVVKDYPKSPKAP 215 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhccc-----chHHHHHHHHHHHhCCCCCCCh
Confidence 45555442 33444555555555555431 11222222 3344444222 55555555554431 111211
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 043311 198 GTYTAVFEAFVRAQKVDEARGLLQQMKAK 226 (257)
Q Consensus 198 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 226 (257)
..+--|-....+.|+.++|..+|++..++
T Consensus 216 dallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 216 DALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 33444444555555555555555555543
No 285
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=75.65 E-value=23 Score=24.90 Aligned_cols=43 Identities=16% Similarity=0.159 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHH
Q 043311 105 EALQLFAQIKDKGHMPD-VVAHTAVIEAYASAGQGKEALRVFMR 147 (257)
Q Consensus 105 ~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~ 147 (257)
.+.++|..|..+|+--. ...|...=..+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 67777777777766443 34566666666777777777777653
No 286
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=74.90 E-value=7.8 Score=21.63 Aligned_cols=25 Identities=24% Similarity=0.513 Sum_probs=20.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCC
Q 043311 203 VFEAFVRAQKVDEARGLLQQMKAKG 227 (257)
Q Consensus 203 li~~~~~~~~~~~a~~~~~~m~~~g 227 (257)
|-.+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5578888899999999999888655
No 287
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=74.77 E-value=29 Score=26.26 Aligned_cols=65 Identities=6% Similarity=0.059 Sum_probs=40.0
Q ss_pred CHHHHHHHHHHHHhCCCCCcHH----------HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 043311 70 DPRNLQEIFHKMRTEGLTNNAV----------KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ 137 (257)
Q Consensus 70 ~~~~a~~~~~~m~~~~~~p~~~----------~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 137 (257)
-++.|+.+|+.+.+.--.|... ..+-.|.+.|.++.|.++++..-.. |+......-+....+.+|
T Consensus 84 PLESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 84 PLESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIREKD 158 (200)
T ss_pred hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHHccc
Confidence 3567888888888765555322 1455677777777777777776663 455544444444444443
No 288
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=74.62 E-value=23 Score=23.89 Aligned_cols=84 Identities=26% Similarity=0.337 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhCCCCCcHHHHHH--HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043311 71 PRNLQEIFHKMRTEGLTNNAVKMFD--ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRM 148 (257)
Q Consensus 71 ~~~a~~~~~~m~~~~~~p~~~~ll~--~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 148 (257)
.++|..|-+.+...+-....+++|+ .+...|++++|..+.+.+ ..||...|-+|-. .+.|-.+++..-+..|
T Consensus 21 HqEA~tIAdwL~~~~~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rl 94 (115)
T TIGR02508 21 HQEANTIADWLHLKGESEEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRL 94 (115)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHH
Confidence 4455555555555443333334433 344556666666555444 2466666655432 3455555555555555
Q ss_pred HHCCCCCCHHHHH
Q 043311 149 LASGVAPNAYTYA 161 (257)
Q Consensus 149 ~~~g~~~~~~t~~ 161 (257)
..+| .|-...|.
T Consensus 95 a~sg-~p~lq~Fa 106 (115)
T TIGR02508 95 AASG-DPRLQTFV 106 (115)
T ss_pred HhCC-CHHHHHHH
Confidence 5554 33334443
No 289
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=74.38 E-value=42 Score=29.63 Aligned_cols=119 Identities=10% Similarity=0.036 Sum_probs=75.5
Q ss_pred HHHHHHhcCChHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043311 128 VIEAYASAGQGKEA-LRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEA 206 (257)
Q Consensus 128 li~~~~~~~~~~~a-~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 206 (257)
-|.--...||+-.| .++|..+....-.|+..-.-..|. ...|+ +|.+...+...... +.-...+-.++++.
T Consensus 295 si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~--~~lg~-----ye~~~~~~s~~~~~-~~s~~~~~~~~~r~ 366 (831)
T PRK15180 295 SITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIF--SHLGY-----YEQAYQDISDVEKI-IGTTDSTLRCRLRS 366 (831)
T ss_pred HHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHH--HHhhh-----HHHHHHHhhchhhh-hcCCchHHHHHHHh
Confidence 34444556666554 456666666545566555444443 34333 88888888776543 34467789999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhh
Q 043311 207 FVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILF 255 (257)
Q Consensus 207 ~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~ 255 (257)
..+.|+|++|..+-.-|....|+-. .....--.+...-|.++++...|
T Consensus 367 ~~~l~r~~~a~s~a~~~l~~eie~~-ei~~iaa~sa~~l~~~d~~~~~w 414 (831)
T PRK15180 367 LHGLARWREALSTAEMMLSNEIEDE-EVLTVAAGSADALQLFDKSYHYW 414 (831)
T ss_pred hhchhhHHHHHHHHHHHhccccCCh-hheeeecccHHHHhHHHHHHHHH
Confidence 9999999999999999998887633 33322222333345555555444
No 290
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=74.29 E-value=47 Score=27.24 Aligned_cols=143 Identities=15% Similarity=0.209 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHhC------CCCCcHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 043311 71 PRNLQEIFHKMRTE------GLTNNAV-KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALR 143 (257)
Q Consensus 71 ~~~a~~~~~~m~~~------~~~p~~~-~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 143 (257)
.+.+.+.|+..... .+.|+.. .++....+.|+.+.-..+++..... .+......++.+++-..+.+...+
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~l~aLa~~~d~~~~~~ 222 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRLLSALACSPDPELLKR 222 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHHHHHHTT-S-HHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHHHHhhhccCCHHHHHH
Confidence 45567777777764 2233332 4777777888876666666666654 478888999999999999999999
Q ss_pred HHHHHHHCC-CCCCHHHHHHHHHHHHhccCCcchhHHHHHHHH----HHHHhCCCCCCHHHHHHHHHHH----HHcCCHH
Q 043311 144 VFMRMLASG-VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL----MEMVGKGMRPNAGTYTAVFEAF----VRAQKVD 214 (257)
Q Consensus 144 ~~~~m~~~g-~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~----~~m~~~g~~p~~~~~~~li~~~----~~~~~~~ 214 (257)
+++.....+ +++ ...+. ++.++...+. . ..+.+++++ +.+.+. +..+......++..+ +.....+
T Consensus 223 ~l~~~l~~~~v~~-~d~~~-~~~~~~~~~~--~-~~~~~~~~~~~n~~~i~~~-~~~~~~~~~~~~~~~~~~~~t~~~~~ 296 (324)
T PF11838_consen 223 LLDLLLSNDKVRS-QDIRY-VLAGLASSNP--V-GRDLAWEFFKENWDAIIKK-FGTNSSALSRVIKSFAGNFSTEEQLD 296 (324)
T ss_dssp HHHHHHCTSTS-T-TTHHH-HHHHHH-CST--T-CHHHHHHHHHHCHHHHHCH-C-TTSHCCHHHHHCCCTT--SHHHHH
T ss_pred HHHHHcCCccccc-HHHHH-HHHHHhcCCh--h-hHHHHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHhccCCCHHHHH
Confidence 998888754 443 33333 3344442111 0 124444443 344432 233333445555543 3334455
Q ss_pred HHHHHHHH
Q 043311 215 EARGLLQQ 222 (257)
Q Consensus 215 ~a~~~~~~ 222 (257)
++.++|+.
T Consensus 297 ~~~~f~~~ 304 (324)
T PF11838_consen 297 ELEEFFED 304 (324)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 55555544
No 291
>PHA02875 ankyrin repeat protein; Provisional
Probab=74.12 E-value=21 Score=30.59 Aligned_cols=149 Identities=11% Similarity=0.109 Sum_probs=80.2
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCC--CcHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCh
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLT--NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVA--HTAVIEAYASAGQG 138 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~~~~ 138 (257)
...+..|+.+.+..+++.-...... .+-.+.+...+..|+. ++.+.+.+.|..|+... -.+.+...+..|+.
T Consensus 73 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~ 148 (413)
T PHA02875 73 HDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDI 148 (413)
T ss_pred HHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCH
Confidence 5666788888776666432111000 1112344445566665 45566667777665432 22344555567776
Q ss_pred HHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHHcCC
Q 043311 139 KEALRVFMRMLASGVAPN---AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGT---YTAVFEAFVRAQK 212 (257)
Q Consensus 139 ~~a~~~~~~m~~~g~~~~---~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~---~~~li~~~~~~~~ 212 (257)
+-+ +.+.+.|..++ ..-++.+.-++ ..|+ .+ +.+.+.+.|..|+... ..+++...+..|+
T Consensus 149 ~~v----~~Ll~~g~~~~~~d~~g~TpL~~A~-~~g~-----~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~ 214 (413)
T PHA02875 149 KGI----ELLIDHKACLDIEDCCGCTPLIIAM-AKGD-----IA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNK 214 (413)
T ss_pred HHH----HHHHhcCCCCCCCCCCCCCHHHHHH-HcCC-----HH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCC
Confidence 544 44445555443 33344444443 3222 33 4555666777776543 2355555567777
Q ss_pred HHHHHHHHHHHHHCCCCCCHH
Q 043311 213 VDEARGLLQQMKAKGFVPDEK 233 (257)
Q Consensus 213 ~~~a~~~~~~m~~~g~~p~~~ 233 (257)
.+ +.+.+.+.|..+|..
T Consensus 215 ~~----iv~~Ll~~gad~n~~ 231 (413)
T PHA02875 215 ID----IVRLFIKRGADCNIM 231 (413)
T ss_pred HH----HHHHHHHCCcCcchH
Confidence 65 455556678888754
No 292
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=74.00 E-value=18 Score=24.59 Aligned_cols=60 Identities=8% Similarity=0.072 Sum_probs=32.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHCCC
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG--QGKEALRVFMRMLASGV 153 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~ 153 (257)
.++..|...|+.++|..-+.++... .-.......+|..+...+ .-+.+..++..+.+.|.
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el~~~--~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~ 68 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKELKLP--SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKL 68 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHTT-G--GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhcCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCC
Confidence 4677788888888888877775332 112233344444444442 23445566666666553
No 293
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.81 E-value=36 Score=25.69 Aligned_cols=133 Identities=14% Similarity=0.188 Sum_probs=88.1
Q ss_pred ccccc-ccccCCCCHHHHHHHHHHHHhCCCCCcHH----HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHH-
Q 043311 58 DPFKK-VVDEEPTDPRNLQEIFHKMRTEGLTNNAV----KMFDALSKDGLTHEALQLFAQIKDKGHMPDVV-AHTAVIE- 130 (257)
Q Consensus 58 ~~~~~-~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~- 130 (257)
+.|.. .-+++.+..++|+.-|.++.+.|...-.. ..-......|+...|...|++.-...-.|-+. -...|=.
T Consensus 60 d~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa 139 (221)
T COG4649 60 DAFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAA 139 (221)
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHH
Confidence 34444 45678899999999999999987654432 23445678899999999999998875555444 2222222
Q ss_pred -HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCC
Q 043311 131 -AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP 195 (257)
Q Consensus 131 -~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p 195 (257)
.+..+|.++....-.+-+...|-+.-...--.|--+--+ .|.+.+|.+.|+.+.+..-.|
T Consensus 140 ~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~k-----agd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 140 YLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYK-----AGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHh-----ccchHHHHHHHHHHHccccCc
Confidence 256788888888877777654433333333344444445 455999999999987643333
No 294
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=73.76 E-value=65 Score=28.62 Aligned_cols=105 Identities=14% Similarity=0.094 Sum_probs=56.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHH
Q 043311 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAG-TYTAVFEAFV 208 (257)
Q Consensus 130 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~ 208 (257)
..+.+.|++..|..-|.++...+ +-|...|...--+|.+.++ +..|.+=-+.-.+. .|+.. -|.-=-.++.
T Consensus 366 ne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~-----~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~ 437 (539)
T KOG0548|consen 366 NEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGE-----YPEALKDAKKCIEL--DPNFIKAYLRKGAALR 437 (539)
T ss_pred HHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhh-----HHHHHHHHHHHHhc--CchHHHHHHHHHHHHH
Confidence 34566777788888887777664 5567777777777777444 55444433332221 23311 1111111122
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 043311 209 RAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRG 244 (257)
Q Consensus 209 ~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 244 (257)
...+++.|.+.|.+..+.. |+..-+.--+.-|..
T Consensus 438 ~mk~ydkAleay~eale~d--p~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 438 AMKEYDKALEAYQEALELD--PSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHHHH
Confidence 2346677777777766543 555544444444444
No 295
>PRK09462 fur ferric uptake regulator; Provisional
Probab=73.02 E-value=25 Score=25.45 Aligned_cols=61 Identities=18% Similarity=0.296 Sum_probs=46.4
Q ss_pred HHHHhCCCCCcHH--HHHHHHHhc-CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 043311 79 HKMRTEGLTNNAV--KMFDALSKD-GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGK 139 (257)
Q Consensus 79 ~~m~~~~~~p~~~--~ll~~~~~~-~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 139 (257)
+.+.+.|+..+.. .++..+... +..-.|.++++.+.+.+...+..|--..|..+...|-+.
T Consensus 6 ~~l~~~glr~T~qR~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~ 69 (148)
T PRK09462 6 TALKKAGLKVTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (148)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 3456677776654 588888765 457789999999999888788888777788888888553
No 296
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=72.86 E-value=8.5 Score=18.40 Aligned_cols=20 Identities=35% Similarity=0.418 Sum_probs=12.8
Q ss_pred HHHHHHHHcCCHHHHHHHHH
Q 043311 202 AVFEAFVRAQKVDEARGLLQ 221 (257)
Q Consensus 202 ~li~~~~~~~~~~~a~~~~~ 221 (257)
.+-..+...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34556666777777776654
No 297
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=72.81 E-value=10 Score=19.05 Aligned_cols=28 Identities=18% Similarity=0.196 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043311 198 GTYTAVFEAFVRAQKVDEARGLLQQMKA 225 (257)
Q Consensus 198 ~~~~~li~~~~~~~~~~~a~~~~~~m~~ 225 (257)
.+|..+-..|...|++++|+..|++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3567777888889999999999988876
No 298
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=72.49 E-value=8.7 Score=21.45 Aligned_cols=25 Identities=20% Similarity=0.372 Sum_probs=17.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC
Q 043311 128 VIEAYASAGQGKEALRVFMRMLASG 152 (257)
Q Consensus 128 li~~~~~~~~~~~a~~~~~~m~~~g 152 (257)
+-.+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 3456777777777777777777543
No 299
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=72.16 E-value=12 Score=29.68 Aligned_cols=49 Identities=16% Similarity=0.272 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043311 119 MPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169 (257)
Q Consensus 119 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~ 169 (257)
.|.+.....++..|.+. ++++|.++|.++-+.|..|. ...+++.+.+-.
T Consensus 236 ~PhP~~v~~ml~~~~~~-~~~~A~~il~~lw~lgysp~-Dii~~~FRv~K~ 284 (333)
T KOG0991|consen 236 EPHPLLVKKMLQACLKR-NIDEALKILAELWKLGYSPE-DIITTLFRVVKN 284 (333)
T ss_pred CCChHHHHHHHHHHHhc-cHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHh
Confidence 36666677777766544 47778888877777776643 334555665544
No 300
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=71.85 E-value=22 Score=26.95 Aligned_cols=33 Identities=24% Similarity=0.139 Sum_probs=24.3
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043311 118 HMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150 (257)
Q Consensus 118 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 150 (257)
..|+..+|..++.++...|+.++|.++..++..
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 457777777777777777777777777777765
No 301
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=71.78 E-value=16 Score=26.62 Aligned_cols=94 Identities=18% Similarity=0.152 Sum_probs=49.8
Q ss_pred CCCHHHHHHHHHHHHhCCCCCcHH--HHH--HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 043311 68 PTDPRNLQEIFHKMRTEGLTNNAV--KMF--DALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALR 143 (257)
Q Consensus 68 ~~~~~~a~~~~~~m~~~~~~p~~~--~ll--~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 143 (257)
..+++.+..+++.|.-. .|... .++ -.+.+.|+|.+|..+|++..+.+. ...--..|+..|.....=..-..
T Consensus 23 ~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~--~~p~~kAL~A~CL~al~Dp~Wr~ 98 (153)
T TIGR02561 23 SADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG--APPYGKALLALCLNAKGDAEWHV 98 (153)
T ss_pred cCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC--CchHHHHHHHHHHHhcCChHHHH
Confidence 66777788887777763 33322 222 234677888888888888877642 22222333333333322122222
Q ss_pred HHHHHHHCCCCCCHHHHHHHHH
Q 043311 144 VFMRMLASGVAPNAYTYAVLIK 165 (257)
Q Consensus 144 ~~~~m~~~g~~~~~~t~~~ll~ 165 (257)
.=+++...|-.|+.....-.+.
T Consensus 99 ~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 99 HADEVLARDADADAVALVRALL 120 (153)
T ss_pred HHHHHHHhCCCHhHHHHHHHHh
Confidence 3345556555555555444333
No 302
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=71.44 E-value=13 Score=30.40 Aligned_cols=49 Identities=16% Similarity=0.203 Sum_probs=38.6
Q ss_pred CCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043311 117 GHMPDVVA-HTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165 (257)
Q Consensus 117 g~~p~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~ 165 (257)
.+.||+.+ ||..|....+.||+++|+.++++-++.|+.--..||...++
T Consensus 251 ~v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V~ 300 (303)
T PRK10564 251 PMLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSVK 300 (303)
T ss_pred ccCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHhh
Confidence 34566654 67999999999999999999999999998766666655443
No 303
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=70.99 E-value=34 Score=24.21 Aligned_cols=60 Identities=15% Similarity=0.180 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043311 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165 (257)
Q Consensus 105 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~ 165 (257)
+..+.++.+....+.|+..+-..-+++|.+-+|+..|.++|+-++.+ ..+-...|-.+++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHH
Confidence 34555666666678888888888999999999999999999888754 2222224555544
No 304
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=70.66 E-value=41 Score=25.42 Aligned_cols=52 Identities=19% Similarity=0.316 Sum_probs=37.7
Q ss_pred chhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 043311 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP 230 (257)
Q Consensus 175 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 230 (257)
....+...+..++... ..|+..+|..++..+...|+.++|.+..+++.. ..|
T Consensus 124 ~~~l~~~~~~a~~~l~--~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~--lyP 175 (193)
T PF11846_consen 124 PEMLEAYIEWAERLLR--RRPDPNVYQRYALALALLGDPEEARQWLARARR--LYP 175 (193)
T ss_pred HHHHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCC
Confidence 3334444444444443 478999999999999999999999999888876 355
No 305
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=70.47 E-value=14 Score=22.36 Aligned_cols=46 Identities=13% Similarity=0.239 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043311 178 LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225 (257)
Q Consensus 178 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 225 (257)
++...++++.+... .-|..---.+|.|+...|++++|.++.+++.+
T Consensus 6 ~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55566666666531 22555566778999999999999998888764
No 306
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.53 E-value=59 Score=26.37 Aligned_cols=100 Identities=7% Similarity=0.004 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHH
Q 043311 122 VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYT 201 (257)
Q Consensus 122 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 201 (257)
..+.++++..+.-.|.+.-....+.+..+..-+-++.....+.+.-...|| .+.|...|+..++..-+.|..+++
T Consensus 177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD-----~k~a~~yf~~vek~~~kL~~~q~~ 251 (366)
T KOG2796|consen 177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGD-----IKTAEKYFQDVEKVTQKLDGLQGK 251 (366)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhccc-----HHHHHHHHHHHHHHHhhhhccchh
Confidence 345667777777778888889999999987767788888888888888666 999999999887644455556655
Q ss_pred HHH-----HHHHHcCCHHHHHHHHHHHHHC
Q 043311 202 AVF-----EAFVRAQKVDEARGLLQQMKAK 226 (257)
Q Consensus 202 ~li-----~~~~~~~~~~~a~~~~~~m~~~ 226 (257)
.++ ..|...+++..|...+++....
T Consensus 252 ~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~ 281 (366)
T KOG2796|consen 252 IMVLMNSAFLHLGQNNFAEAHRFFTEILRM 281 (366)
T ss_pred HHHHhhhhhheecccchHHHHHHHhhcccc
Confidence 554 3456678899999999888754
No 307
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=69.08 E-value=63 Score=26.50 Aligned_cols=143 Identities=19% Similarity=0.133 Sum_probs=90.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCC
Q 043311 94 FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADG 173 (257)
Q Consensus 94 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~ 173 (257)
-......|+..+|..+|+...+..- -+...--.+..+|...|+.+.|..++..+...--.........-|..+.+..+
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~- 218 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAA- 218 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhc-
Confidence 3455678999999999988876521 23456677888999999999999999988755322233332333444444333
Q ss_pred cchhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHhhcCC
Q 043311 174 NAKILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQKVDEARGLLQQMKAK--GFVPDEKAVKEALIDKRGQG 246 (257)
Q Consensus 174 ~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g 246 (257)
..+...+-...-. .| |...=-.+-..+...|+.+.|.+.+=.+.++ |.. |...-..++..+.--|
T Consensus 219 ----~~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g 286 (304)
T COG3118 219 ----TPEIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG 286 (304)
T ss_pred ----CCCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence 3333334444433 35 5556666778888999999998875555543 544 4455556666555544
No 308
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=68.97 E-value=74 Score=27.23 Aligned_cols=57 Identities=16% Similarity=0.075 Sum_probs=42.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHH--HHHHHHHHH--HhcCChHHHHHHHHHHHHC
Q 043311 94 FDALSKDGLTHEALQLFAQIKDKGHMPDVV--AHTAVIEAY--ASAGQGKEALRVFMRMLAS 151 (257)
Q Consensus 94 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~--~~~~~~~~a~~~~~~m~~~ 151 (257)
...+.+.+++..|.++|+++.+. ++++.. .|..+..+| ....++++|.+.|+.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 44556889999999999999987 555554 455555555 4567889999999987754
No 309
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=68.90 E-value=85 Score=27.94 Aligned_cols=156 Identities=14% Similarity=0.093 Sum_probs=82.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~ 172 (257)
+.++..+..+++.+.+.+....+.. -++.-++..=.+|...|.+.+...+-..-.+.|-. ...-|+.+-.++++.|.
T Consensus 230 lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 230 LGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGN 306 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhh
Confidence 5555566666666666666555532 34444444445566666555544444443333321 23344444444444333
Q ss_pred --CcchhHHHHHHHHHHHHhCCCCCCHHH-------------------------HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043311 173 --GNAKILGDAQKYLMEMVGKGMRPNAGT-------------------------YTAVFEAFVRAQKVDEARGLLQQMKA 225 (257)
Q Consensus 173 --~~~~~~~~a~~~~~~m~~~g~~p~~~~-------------------------~~~li~~~~~~~~~~~a~~~~~~m~~ 225 (257)
...+..+.+...|+........||..+ .-.=-..+.+.|++..|.+.|.+++.
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk 386 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK 386 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 112334444444444332222222211 00112345677888888888888887
Q ss_pred CCCCCCHHHHHHHHHHhhcCCchhhHH
Q 043311 226 KGFVPDEKAVKEALIDKRGQGFRGVIN 252 (257)
Q Consensus 226 ~g~~p~~~t~~~ll~~~~~~g~~~~~~ 252 (257)
+. +-|...|+.---+|.+.|.+..+.
T Consensus 387 r~-P~Da~lYsNRAac~~kL~~~~~aL 412 (539)
T KOG0548|consen 387 RD-PEDARLYSNRAACYLKLGEYPEAL 412 (539)
T ss_pred cC-CchhHHHHHHHHHHHHHhhHHHHH
Confidence 76 456777777777777777766554
No 310
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=68.15 E-value=52 Score=25.21 Aligned_cols=144 Identities=17% Similarity=0.120 Sum_probs=100.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcc
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA 171 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~ 171 (257)
++..+..+.=+++...+-..+ +-.+-|++..--.|-.++...|+..+|...|.+-..--..-|....-.+-++....+
T Consensus 61 ~~~~a~~q~ldP~R~~Rea~~--~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~ 138 (251)
T COG4700 61 TLLMALQQKLDPERHLREATE--ELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQ 138 (251)
T ss_pred HHHHHHHHhcChhHHHHHHHH--HHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhc
Confidence 455555555555544332221 123458888888899999999999999999999876556678888888888888855
Q ss_pred CCcchhHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 043311 172 DGNAKILGDAQKYLMEMVGK---GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246 (257)
Q Consensus 172 ~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 246 (257)
+ +..|...++++-+. +-.||. .-.+-+.+...|...+|+.-|+...+. .|+...-...-..+.++|
T Consensus 139 ~-----~A~a~~tLe~l~e~~pa~r~pd~--~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qg 207 (251)
T COG4700 139 E-----FAAAQQTLEDLMEYNPAFRSPDG--HLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQG 207 (251)
T ss_pred c-----HHHHHHHHHHHhhcCCccCCCCc--hHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhc
Confidence 5 89999999988764 233443 344568889999999999999998875 444443333333344444
No 311
>PRK09462 fur ferric uptake regulator; Provisional
Probab=67.95 E-value=31 Score=24.90 Aligned_cols=64 Identities=13% Similarity=0.101 Sum_probs=45.1
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhh
Q 043311 186 MEMVGKGMRPNAGTYTAVFEAFVRA-QKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGV 250 (257)
Q Consensus 186 ~~m~~~g~~p~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 250 (257)
+.+.+.|++++..= .++++..... +..-.|.++++++.+.+...+..|....|..+...|....
T Consensus 6 ~~l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~~ 70 (148)
T PRK09462 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTR 70 (148)
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 34566777765543 3344444443 4677889999999888888888888888888888887654
No 312
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.14 E-value=98 Score=28.00 Aligned_cols=157 Identities=18% Similarity=0.138 Sum_probs=91.8
Q ss_pred ccCCCCHHHHHHHHHHHHh-------CCCCCcHHHHHHHHHhcC-----ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043311 65 DEEPTDPRNLQEIFHKMRT-------EGLTNNAVKMFDALSKDG-----LTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132 (257)
Q Consensus 65 ~~~~~~~~~a~~~~~~m~~-------~~~~p~~~~ll~~~~~~~-----~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 132 (257)
.....|++.|...|+...+ .|..+-...+-.+|.+.. +.+.|..+|..--+.|. |+....-..+.-.
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~ 337 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYET 337 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHc
Confidence 5577899999999988877 564444445666666643 55668888888777654 4444444444333
Q ss_pred Hh-cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 043311 133 AS-AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211 (257)
Q Consensus 133 ~~-~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 211 (257)
.. ..+...|+++|..--+.|.. ...-+..++-... .+-....+.|..++....+.|......... .+..+.. +
T Consensus 338 g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G---~gv~r~~~~A~~~~k~aA~~g~~~A~~~~~-~~~~~g~-~ 411 (552)
T KOG1550|consen 338 GTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELG---LGVERNLELAFAYYKKAAEKGNPSAAYLLG-AFYEYGV-G 411 (552)
T ss_pred CCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhC---CCcCCCHHHHHHHHHHHHHccChhhHHHHH-HHHHHcc-c
Confidence 33 35678899999888887743 3333333333222 222445788888888877776222222222 2222222 5
Q ss_pred CHHHHHHHHHHHHHCCC
Q 043311 212 KVDEARGLLQQMKAKGF 228 (257)
Q Consensus 212 ~~~~a~~~~~~m~~~g~ 228 (257)
+.+.+.-.+..+...|.
T Consensus 412 ~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 412 RYDTALALYLYLAELGY 428 (552)
T ss_pred cccHHHHHHHHHHHhhh
Confidence 56666665555555543
No 313
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=66.89 E-value=70 Score=26.17 Aligned_cols=109 Identities=17% Similarity=0.204 Sum_probs=56.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~ 172 (257)
++....+.++.....+.+..+.. +..-...|..+...|++.+|+++..+..+. .. +-..|++ ++....
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~~-l~-~l~~~~c-~~~L~~--- 171 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQL-LE-ELKGYSC-VRHLSS--- 171 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HH-hcccchH-HHHHhH---
Confidence 44444444444445555554443 455566677777888888888888877653 10 1111111 111111
Q ss_pred CcchhHHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHHcCCHHHHH
Q 043311 173 GNAKILGDAQKYLMEMVGK-----GMRPNAGTYTAVFEAFVRAQKVDEAR 217 (257)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~~-----g~~p~~~~~~~li~~~~~~~~~~~a~ 217 (257)
++++.....+++.+. -..-|...|..++.+|.-.|+...+.
T Consensus 172 ----~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 172 ----QLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAM 217 (291)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHH
Confidence 133333333332211 01357778888888888877654433
No 314
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=66.53 E-value=34 Score=22.39 Aligned_cols=69 Identities=13% Similarity=0.092 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhh
Q 043311 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINIL 254 (257)
Q Consensus 180 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l 254 (257)
.+.++++.+.+.|+ .+..-.+-+-.+--..|+.+.|.+++.++. +| |+ -|..++.+....|..+.|+.+
T Consensus 20 ~~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg--~~--aF~~Fl~aLreT~~~~LA~el 88 (88)
T cd08819 20 KTRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QK--EG--WFSKFLQALRETEHHELAREL 88 (88)
T ss_pred hHHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cC--Cc--HHHHHHHHHHHcCchhhhhcC
Confidence 34556777776653 233333333332235578888888888887 54 44 678888888888887777653
No 315
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=66.52 E-value=1.1e+02 Score=28.54 Aligned_cols=161 Identities=14% Similarity=0.035 Sum_probs=93.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcc
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG-VAPNAYTYAVLIKGLAAAA 171 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~t~~~ll~~~~~~~ 171 (257)
|.-++..+|+++.+-+.|++.... ..-....|+.+=..|.-+|.-..|..+++.-.... -.+|...+-..-+.|.+.-
T Consensus 329 Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l 407 (799)
T KOG4162|consen 329 LTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERL 407 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhch
Confidence 445566777888887777776543 12234556666666666666666666665544321 1223333333333332211
Q ss_pred C----------------------------------------------CcchhHHHHHHHHHHHHhC-CCCCCHHHHHHHH
Q 043311 172 D----------------------------------------------GNAKILGDAQKYLMEMVGK-GMRPNAGTYTAVF 204 (257)
Q Consensus 172 ~----------------------------------------------~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li 204 (257)
. .+.....++.+.+++..+. +-.|+...|-++-
T Consensus 408 ~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq 487 (799)
T KOG4162|consen 408 KLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQ 487 (799)
T ss_pred hhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 1 0112234555555555432 3345555554443
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 205 EAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 205 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
|+..++++.|.+..++..+.+-.-+...|..+.-.+..++....|+.+.+
T Consensus 488 --~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd 537 (799)
T KOG4162|consen 488 --YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVD 537 (799)
T ss_pred --HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 46677899999999999988656677777777777777788877777653
No 316
>PRK14700 recombination factor protein RarA; Provisional
Probab=66.22 E-value=74 Score=26.21 Aligned_cols=121 Identities=13% Similarity=0.112 Sum_probs=78.7
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhc---CC
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGH--MPDVVAHTAVIEAYASA---GQ 137 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~---~~ 137 (257)
.+-...||...|+..++.+.......+.. .| ..+...++. .+..+ .-+-..+--+|+++.|+ .|
T Consensus 73 ia~~a~GDaR~aLN~LE~a~~~~~~~~~~-~i-------t~~~~~~~~---~~~~~~yDk~gd~HYd~iSAf~KSiRGSD 141 (300)
T PRK14700 73 MHNYNEGDCRKILNLLERMFLISTRGDEI-YL-------NKELFDQAV---GETSRDFHREGKEFYEQLSAFHKSVRGTD 141 (300)
T ss_pred HHHhcCCHHHHHHHHHHHHHhhccccCCC-cc-------CHHHHHHHH---hHHHhcccCCcchhHHHHHHHHHHhhcCC
Confidence 45567888888888888755311000000 00 011222222 11212 22333455568888775 68
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCC
Q 043311 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194 (257)
Q Consensus 138 ~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~ 194 (257)
.+.|+-++-.|.+.|-.|....=-.++-++...|..+..-...|...++..+.-|++
T Consensus 142 pDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~P 198 (300)
T PRK14700 142 PDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMP 198 (300)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCh
Confidence 999999999999999999988888999999888876666678888888888777753
No 317
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=66.22 E-value=51 Score=24.35 Aligned_cols=63 Identities=17% Similarity=0.303 Sum_probs=27.9
Q ss_pred CCCHHHHHHHHHHHHhCCCCCcHH--HHHH--HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 043311 68 PTDPRNLQEIFHKMRTEGLTNNAV--KMFD--ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134 (257)
Q Consensus 68 ~~~~~~a~~~~~~m~~~~~~p~~~--~ll~--~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 134 (257)
.++.+.+..++..+.-. .|... .+.. .+.+.|+|.+|..+|+++.+.+ |.......|+..|..
T Consensus 23 ~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 23 LGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLY 89 (160)
T ss_pred cCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHH
Confidence 34555555555555542 22221 1222 2344555666666666655432 333333444444433
No 318
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=65.96 E-value=62 Score=29.87 Aligned_cols=77 Identities=18% Similarity=0.170 Sum_probs=46.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHH--HHHHHHH-HHHCCCCCCHHHHHHHHHH
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDK--GHMPDVVAHTAVIEAYASAGQGKE--ALRVFMR-MLASGVAPNAYTYAVLIKG 166 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~~~~~~--a~~~~~~-m~~~g~~~~~~t~~~ll~~ 166 (257)
+|+.+|...|++-.+..+++.+..+ |-+.-...||.-|+-+.+.|.++. ..+-..+ +++.-+.-|..||..++++
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 5777888888887777777777544 334445667777777777776532 1111112 2222355677777777765
Q ss_pred HH
Q 043311 167 LA 168 (257)
Q Consensus 167 ~~ 168 (257)
..
T Consensus 113 sl 114 (1117)
T COG5108 113 SL 114 (1117)
T ss_pred hc
Confidence 43
No 319
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=65.92 E-value=55 Score=30.21 Aligned_cols=80 Identities=14% Similarity=0.183 Sum_probs=56.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhccCCcc-hhHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 043311 127 AVIEAYASAGQGKEALRVFMRMLAS--GVAPNAYTYAVLIKGLAAAADGNA-KILGDAQKYLMEMVGKGMRPNAGTYTAV 203 (257)
Q Consensus 127 ~li~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~t~~~ll~~~~~~~~~~~-~~~~~a~~~~~~m~~~g~~p~~~~~~~l 203 (257)
+|+.+|..+|++..+.++++..... |-+.=...||..|+...+.|+..- ...+.+.++++.- .+.-|.-||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a---~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA---RLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh---hcCCcchHHHHH
Confidence 8999999999999999999999865 444556678888888888766221 1123444444443 356688888887
Q ss_pred HHHHHH
Q 043311 204 FEAFVR 209 (257)
Q Consensus 204 i~~~~~ 209 (257)
+.+...
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 766543
No 320
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=65.85 E-value=86 Score=26.87 Aligned_cols=122 Identities=12% Similarity=0.043 Sum_probs=85.9
Q ss_pred ccccCCCCHHHHHHHHHHHHhC-----CCCCcHH------------HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTE-----GLTNNAV------------KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAH 125 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~-----~~~p~~~------------~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 125 (257)
..+-+.|++..|...|+..... +..+... .+.-+|.|.+++..|++..+...+.. ++|+-..
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 3667889999999998886651 1222111 26778889999999999988887752 3455555
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHh
Q 043311 126 TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190 (257)
Q Consensus 126 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~ 190 (257)
-.==.+|...|+++.|...|+.+++ +.|+...-..=|..|.+.- ....+...++|..|-.
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~k~---~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQKI---REYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhh
Confidence 5556678888999999999999998 5788777777666665411 1224455778888763
No 321
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=65.84 E-value=47 Score=23.83 Aligned_cols=54 Identities=28% Similarity=0.241 Sum_probs=33.7
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043311 96 ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150 (257)
Q Consensus 96 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 150 (257)
++...|+.+.|++.|.+-..- .+-....||.--.++.-.|+.++|++=+++-.+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 445667777777777665543 123456677777777777777777666666553
No 322
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=65.70 E-value=32 Score=27.33 Aligned_cols=56 Identities=14% Similarity=0.087 Sum_probs=32.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHH-----hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043311 93 MFDALSKDGLTHEALQLFAQIK-----DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRM 148 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~-----~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 148 (257)
+-..|.+.|++++|.++|+.+. +....+...+...+..++.+.|+.+....+--+|
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 5556666677777777666653 1123444555556666666666666665555444
No 323
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=65.37 E-value=90 Score=26.94 Aligned_cols=77 Identities=19% Similarity=0.122 Sum_probs=59.8
Q ss_pred CCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCC
Q 043311 119 MPDVVAHTAVIEAYASA---GQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP 195 (257)
Q Consensus 119 ~p~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p 195 (257)
..+-..+-.+|+++.|+ .|.+.|+-++-+|.+.|-.|-...--.++-++...|..+..-...|...++..+.-|.+-
T Consensus 243 Dk~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIGlAdP~Al~~a~aa~da~~~lG~PE 322 (436)
T COG2256 243 DKDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIGLADPNALQVAVAALDAVERLGSPE 322 (436)
T ss_pred CCCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHHhCCch
Confidence 34556677788888875 589999999999999998788777777888888877755666777777777777767543
No 324
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=65.04 E-value=16 Score=24.92 Aligned_cols=48 Identities=15% Similarity=0.153 Sum_probs=35.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhh
Q 043311 203 VFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGV 250 (257)
Q Consensus 203 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 250 (257)
+++.....+..-.|.++++++.+.+..++..|....|..+...|....
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~ 53 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVRE 53 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 445555556667788888888888777788888888888887776544
No 325
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=64.74 E-value=11 Score=18.60 Aligned_cols=24 Identities=17% Similarity=0.293 Sum_probs=18.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC
Q 043311 203 VFEAFVRAQKVDEARGLLQQMKAK 226 (257)
Q Consensus 203 li~~~~~~~~~~~a~~~~~~m~~~ 226 (257)
+-.++.+.|++++|.+.|+++.+.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 345567788999999999888764
No 326
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=64.01 E-value=21 Score=22.96 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=18.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKG 117 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g 117 (257)
++++.+.++.-.++|+++.+.|.++|
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG 61 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG 61 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC
Confidence 46677777777777777777777765
No 327
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=63.65 E-value=8.6 Score=26.62 Aligned_cols=47 Identities=13% Similarity=0.225 Sum_probs=29.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQG 138 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 138 (257)
.++..+.+.+..-.|.++++.+.+.+...+..|.-.-|+.+.+.|-+
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 46666666666666777777777776666666655556666666543
No 328
>PHA03100 ankyrin repeat protein; Provisional
Probab=63.54 E-value=77 Score=27.70 Aligned_cols=59 Identities=14% Similarity=0.139 Sum_probs=25.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVA--HTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~ 156 (257)
+.+...++.|. .-.++.+.+.+.|..++... -.+.+...+..|+.+- .+.+.+.|..++
T Consensus 143 t~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~i----v~~Ll~~ga~~~ 203 (480)
T PHA03100 143 NLLHLYLESNK--IDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDV----IKFLLDNGADIN 203 (480)
T ss_pred cHHHHHHHcCC--ChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHH----HHHHHHcCCCcc
Confidence 34555555552 11334444555555544322 1233444445554433 334444454444
No 329
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=62.74 E-value=28 Score=23.73 Aligned_cols=48 Identities=15% Similarity=0.252 Sum_probs=33.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGK 139 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 139 (257)
.++..+...+..-.|.++++.+.+.+...+..|--..|+.+.+.|-+.
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 456666666666677888888887777777777777777777777543
No 330
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=62.51 E-value=21 Score=22.68 Aligned_cols=14 Identities=21% Similarity=0.382 Sum_probs=6.2
Q ss_pred HHHHHHHCCCCCCH
Q 043311 144 VFMRMLASGVAPNA 157 (257)
Q Consensus 144 ~~~~m~~~g~~~~~ 157 (257)
+++.+.+.|..++.
T Consensus 41 ~~~~Ll~~g~~~~~ 54 (89)
T PF12796_consen 41 IVKLLLENGADINS 54 (89)
T ss_dssp HHHHHHHTTTCTT-
T ss_pred HHHHHHHhcccccc
Confidence 34444445555444
No 331
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=62.12 E-value=86 Score=25.60 Aligned_cols=112 Identities=13% Similarity=0.008 Sum_probs=76.5
Q ss_pred CCCCCccccccccccCCCCHHHHHHHHHHHHh--CCCCCcHHHH-HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 043311 52 KLPPPYDPFKKVVDEEPTDPRNLQEIFHKMRT--EGLTNNAVKM-FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAV 128 (257)
Q Consensus 52 ~~~p~~~~~~~~~~~~~~~~~~a~~~~~~m~~--~~~~p~~~~l-l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 128 (257)
.++-......+.++++.++++++....-.--+ +.+.|....| |-.|+|.+.+..+.++-+...+..-.-+...|.++
T Consensus 80 evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~v 159 (309)
T PF07163_consen 80 EVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTV 159 (309)
T ss_pred hhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHH
Confidence 44444555555888999999998877544433 3455555443 66788999999999999998887544556669998
Q ss_pred HHHHHh-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043311 129 IEAYAS-----AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167 (257)
Q Consensus 129 i~~~~~-----~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~ 167 (257)
...|.. .|.+++|.++. ......+..=-...++..
T Consensus 160 aELyLl~VLlPLG~~~eAeelv----~gs~af~EeQr~~aL~~v 199 (309)
T PF07163_consen 160 AELYLLHVLLPLGHFSEAEELV----VGSAAFTEEQRQEALQAV 199 (309)
T ss_pred HHHHHHHHHhccccHHHHHHHH----hcCCCCCHHHHHHHHHHH
Confidence 888777 49999997776 333444444444444433
No 332
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=61.91 E-value=89 Score=25.68 Aligned_cols=146 Identities=16% Similarity=0.127 Sum_probs=91.5
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHH--HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAV--KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 140 (257)
......|++..|..+|+......-..... .+..+|...|+++.|..++..+...--.........-|..+.+.....+
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 46678899999999999888754333322 5889999999999999999998765322223333334555666655555
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 043311 141 ALRVFMRMLASGVAP-NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG--KGMRPNAGTYTAVFEAFVRAQKVDEAR 217 (257)
Q Consensus 141 a~~~~~~m~~~g~~~-~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~--~g~~p~~~~~~~li~~~~~~~~~~~a~ 217 (257)
...+-.+.-. .| |...=..+-..+.- .|+.+.|.+.+-.+.. .|.. |...=..|++.+.--|.-|.+.
T Consensus 222 ~~~l~~~~aa---dPdd~~aa~~lA~~~~~-----~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~Dp~~ 292 (304)
T COG3118 222 IQDLQRRLAA---DPDDVEAALALADQLHL-----VGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPADPLV 292 (304)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCCHHH
Confidence 5555555543 33 55555555566666 4447887776665553 3443 4555566666666666443333
No 333
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=61.49 E-value=79 Score=24.93 Aligned_cols=72 Identities=18% Similarity=0.139 Sum_probs=47.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCCHHHHHHHHH
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG--VAPNAYTYAVLIK 165 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~~~~~t~~~ll~ 165 (257)
.++.+.+.+..++++....+-.+.. +.|..+-..+++.|+-.|+|++|..-++-.-+.. -.+-..+|..+|.
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 4567778888888888777665542 3356677788888999999998887766554431 2223345555444
No 334
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=61.11 E-value=91 Score=25.51 Aligned_cols=76 Identities=16% Similarity=0.156 Sum_probs=45.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-----CCCCHHHHHHHHHH
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG-----VAPNAYTYAVLIKG 166 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-----~~~~~~t~~~ll~~ 166 (257)
.-+..+...|++..|.++..+.++.-- ....|+++=. -..++++.....+++.+.. ...|...|..++.+
T Consensus 132 ~~l~~ll~~~dy~~Al~li~~~~~~l~--~l~~~~c~~~---L~~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~A 206 (291)
T PF10475_consen 132 SRLQELLEEGDYPGALDLIEECQQLLE--ELKGYSCVRH---LSSQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEA 206 (291)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHH--hcccchHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 367778899999999999988876410 1111111111 1123344444444433221 26799999999999
Q ss_pred HHhccC
Q 043311 167 LAAAAD 172 (257)
Q Consensus 167 ~~~~~~ 172 (257)
|.-.|+
T Consensus 207 Y~lLgk 212 (291)
T PF10475_consen 207 YQLLGK 212 (291)
T ss_pred HHHHhh
Confidence 999655
No 335
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=60.30 E-value=14 Score=25.50 Aligned_cols=51 Identities=18% Similarity=0.134 Sum_probs=39.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhH
Q 043311 201 TAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVI 251 (257)
Q Consensus 201 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~ 251 (257)
.++++.....+.+-.|.++++.|...|...+..|....|..+.+.|.....
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~~~ 61 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIRKI 61 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEEEE
Confidence 456666667777888999999999988888999999999988888876543
No 336
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=60.24 E-value=51 Score=22.34 Aligned_cols=44 Identities=18% Similarity=0.186 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 043311 178 LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227 (257)
Q Consensus 178 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 227 (257)
+++|..+.+.+ ..||.+.|-+|-. .+.|..+....-+.+|..+|
T Consensus 55 Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 55 YQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence 55554444443 2345555444433 34444444444444444444
No 337
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=60.22 E-value=41 Score=21.56 Aligned_cols=15 Identities=20% Similarity=0.408 Sum_probs=6.6
Q ss_pred CChHHHHHHHHHHHH
Q 043311 136 GQGKEALRVFMRMLA 150 (257)
Q Consensus 136 ~~~~~a~~~~~~m~~ 150 (257)
++.++|+..|....+
T Consensus 20 ~~~~~Al~~W~~aL~ 34 (80)
T PF10579_consen 20 NETQQALQKWRKALE 34 (80)
T ss_pred chHHHHHHHHHHHHh
Confidence 334444444444443
No 338
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=59.55 E-value=56 Score=22.56 Aligned_cols=27 Identities=22% Similarity=0.411 Sum_probs=20.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCC
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGH 118 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~ 118 (257)
|+++-+.+|...++|++|.+.|.++|-
T Consensus 66 tViD~lrRC~T~EEALEVInylek~GE 92 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRGE 92 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhCC
Confidence 366777777778888888888888763
No 339
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=58.74 E-value=30 Score=26.47 Aligned_cols=56 Identities=11% Similarity=0.096 Sum_probs=42.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCC--------------CCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGH--------------MPDVVAHTAVIEAYASAGQGKEALRVFMR 147 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~--------------~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 147 (257)
+++..|.+..+|.++.++++.|.+..+ .+--..-|.....|.++|.++.|..++++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 378888888899999999888876532 23345577777888888888888888763
No 340
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=58.62 E-value=22 Score=17.60 Aligned_cols=27 Identities=11% Similarity=0.153 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043311 199 TYTAVFEAFVRAQKVDEARGLLQQMKA 225 (257)
Q Consensus 199 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 225 (257)
.|..+=..+...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345566778888999999999888765
No 341
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=58.47 E-value=91 Score=29.07 Aligned_cols=30 Identities=10% Similarity=0.150 Sum_probs=18.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043311 193 MRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222 (257)
Q Consensus 193 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 222 (257)
++-|....-.+-+++.+.|..++|.+.|-+
T Consensus 848 Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 848 LPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred cCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 344555566666777777777776666544
No 342
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=57.99 E-value=23 Score=17.63 Aligned_cols=27 Identities=11% Similarity=0.165 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043311 199 TYTAVFEAFVRAQKVDEARGLLQQMKA 225 (257)
Q Consensus 199 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 225 (257)
+|..+-..|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455666777888888888888887654
No 343
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=57.80 E-value=1e+02 Score=27.32 Aligned_cols=39 Identities=10% Similarity=0.200 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 043311 121 DVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYT 159 (257)
Q Consensus 121 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t 159 (257)
+...+..++.+....+....|+.++++|.+.|..|....
T Consensus 247 ~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~~ 285 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKFL 285 (484)
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHHH
Confidence 444455566655555556788999999998887776543
No 344
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=57.67 E-value=72 Score=23.30 Aligned_cols=57 Identities=12% Similarity=0.180 Sum_probs=40.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 043311 94 FDALSKDGLTHEALQLFAQIKDKG-HMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152 (257)
Q Consensus 94 l~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 152 (257)
+..-...++.+++..+++.|.--. -.+...++...| +...|+|++|.++|++..+.+
T Consensus 17 ~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 17 LMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC
Confidence 333345888899999988887632 123445555555 567899999999999998764
No 345
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=57.66 E-value=93 Score=24.54 Aligned_cols=78 Identities=14% Similarity=0.056 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHh--CCCCCCHHHHH
Q 043311 124 AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG--KGMRPNAGTYT 201 (257)
Q Consensus 124 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~--~g~~p~~~~~~ 201 (257)
|.+..|+.+.+.+.+.+++...++-.+.+ +.|..+-..+++.+|-.|+ |++|..=++-... ....+-..+|.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGd-----w~kAl~Ql~l~a~l~p~~t~~a~lyr 76 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGD-----WEKALAQLNLAATLSPQDTVGASLYR 76 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcch-----HHHHHHHHHHHhhcCcccchHHHHHH
Confidence 34556778889999999999998877763 5577788889999999555 9999876654432 23344556777
Q ss_pred HHHHHH
Q 043311 202 AVFEAF 207 (257)
Q Consensus 202 ~li~~~ 207 (257)
.+|++-
T Consensus 77 ~lir~e 82 (273)
T COG4455 77 HLIRCE 82 (273)
T ss_pred HHHHHH
Confidence 777643
No 346
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=57.48 E-value=20 Score=21.65 Aligned_cols=26 Identities=23% Similarity=0.211 Sum_probs=17.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 043311 125 HTAVIEAYASAGQGKEALRVFMRMLA 150 (257)
Q Consensus 125 ~~~li~~~~~~~~~~~a~~~~~~m~~ 150 (257)
.--+|.+|...|++++|.++++++.+
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34467777777777777777777653
No 347
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=57.13 E-value=61 Score=22.24 Aligned_cols=78 Identities=21% Similarity=0.229 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCcHHHHHH--HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 043311 69 TDPRNLQEIFHKMRTEGLTNNAVKMFD--ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFM 146 (257)
Q Consensus 69 ~~~~~a~~~~~~m~~~~~~p~~~~ll~--~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 146 (257)
...++|..|.+.+...+.....+++|+ .+.+.|++++|.. .....-.||...|-+| +-.+.|--+++...+.
T Consensus 20 HcH~EA~tIa~wL~~~~~~~E~v~lIr~~sLmNrG~Yq~ALl----~~~~~~~pdL~p~~AL--~a~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGEMEEVVALIRLSSLMNRGDYQEALL----LPQCHCYPDLEPWAAL--CAWKLGLASALESRLT 93 (116)
T ss_dssp T-HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHTT-HHHHHH----HHTTS--GGGHHHHHH--HHHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHH----hcccCCCccHHHHHHH--HHHhhccHHHHHHHHH
Confidence 345667777777776665444455544 3456677777611 1122234666666554 3356666666666666
Q ss_pred HHHHCC
Q 043311 147 RMLASG 152 (257)
Q Consensus 147 ~m~~~g 152 (257)
++..+|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 666554
No 348
>PHA03100 ankyrin repeat protein; Provisional
Probab=56.99 E-value=69 Score=28.01 Aligned_cols=145 Identities=14% Similarity=0.123 Sum_probs=64.9
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHH-----HHHHH-----HHhcCChHHHHHHHHHHHhCCCCCCH---HHHHHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAV-----KMFDA-----LSKDGLTHEALQLFAQIKDKGHMPDV---VAHTAVI 129 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-----~ll~~-----~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~li 129 (257)
...++.|+.+.+..+ .+.|..|+.. +.+.. ....|+ .++.+.+.+.|..++. ...+.+.
T Consensus 40 ~~A~~~~~~~ivk~L----l~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~----~~iv~~Ll~~ga~i~~~d~~g~tpL~ 111 (480)
T PHA03100 40 YLAKEARNIDVVKIL----LDNGADINSSTKNNSTPLHYLSNIKYNLTDV----KEIVKLLLEYGANVNAPDNNGITPLL 111 (480)
T ss_pred hhhhccCCHHHHHHH----HHcCCCCCCccccCcCHHHHHHHHHHHhhch----HHHHHHHHHCCCCCCCCCCCCCchhh
Confidence 344556665544444 3455554432 23333 344444 3344445556654432 2344444
Q ss_pred HHHH-hcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHH--HHHH
Q 043311 130 EAYA-SAGQGKEALRVFMRMLASGVAPNAY---TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGT--YTAV 203 (257)
Q Consensus 130 ~~~~-~~~~~~~a~~~~~~m~~~g~~~~~~---t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~l 203 (257)
.+.. ..|+.+ +++.+.+.|..++.. .++ .+..++..+. .-.++++.+.+.|..++... -.+.
T Consensus 112 ~A~~~~~~~~~----iv~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~-------~~~~iv~~Ll~~g~din~~d~~g~tp 179 (480)
T PHA03100 112 YAISKKSNSYS----IVEYLLDNGANVNIKNSDGEN-LLHLYLESNK-------IDLKILKLLIDKGVDINAKNRYGYTP 179 (480)
T ss_pred HHHhcccChHH----HHHHHHHcCCCCCccCCCCCc-HHHHHHHcCC-------ChHHHHHHHHHCCCCcccccCCCCCH
Confidence 4443 455543 344445556554332 223 3333344220 12334445555666554332 1234
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 043311 204 FEAFVRAQKVDEARGLLQQMKAKGFVPD 231 (257)
Q Consensus 204 i~~~~~~~~~~~a~~~~~~m~~~g~~p~ 231 (257)
+..++..|+.+.+..++ +.|..|+
T Consensus 180 L~~A~~~~~~~iv~~Ll----~~ga~~~ 203 (480)
T PHA03100 180 LHIAVEKGNIDVIKFLL----DNGADIN 203 (480)
T ss_pred HHHHHHhCCHHHHHHHH----HcCCCcc
Confidence 45556666655444443 4455444
No 349
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=56.27 E-value=14 Score=19.09 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=17.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHH
Q 043311 121 DVVAHTAVIEAYASAGQGKEAL 142 (257)
Q Consensus 121 ~~~~~~~li~~~~~~~~~~~a~ 142 (257)
|...|+.+=..|...|++++|.
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 5678888888888888888875
No 350
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=56.16 E-value=1.8e+02 Score=27.33 Aligned_cols=135 Identities=13% Similarity=0.225 Sum_probs=66.7
Q ss_pred CCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHhcCChHHHHH----------------HHHHHHhCCCCCCHHHHHHHHHH
Q 043311 68 PTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQ----------------LFAQIKDKGHMPDVVAHTAVIEA 131 (257)
Q Consensus 68 ~~~~~~a~~~~~~m~~~~~~p~~~~ll~~~~~~~~~~~a~~----------------~~~~m~~~g~~p~~~~~~~li~~ 131 (257)
-|.+++|.++|-+|-+.++. +..+.+.|+|-.+.+ .|+.|-+. -.+...|...-..
T Consensus 747 ~g~feeaek~yld~drrDLA------ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~--fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDLA------IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGET--FAEMMEWEEAAKY 818 (1189)
T ss_pred hcchhHhhhhhhccchhhhh------HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 46777777777666655432 233333444433333 33333331 1244456666666
Q ss_pred HHhcCChHHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 043311 132 YASAGQGKEALRVFMRMLAS--------GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAV 203 (257)
Q Consensus 132 ~~~~~~~~~a~~~~~~m~~~--------g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 203 (257)
|..+|+.+.-.+.+-.+... .++-|....-.+-+++.+ .|.-+.|.+.|-. .+. | .+.
T Consensus 819 Y~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~s-----vGMC~qAV~a~Lr---~s~-p-----kaA 884 (1189)
T KOG2041|consen 819 YSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTS-----VGMCDQAVEAYLR---RSL-P-----KAA 884 (1189)
T ss_pred HHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHh-----hchHHHHHHHHHh---ccC-c-----HHH
Confidence 77766665543333222211 233444555555566665 3334444443322 111 1 234
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 043311 204 FEAFVRAQKVDEARGLLQQMK 224 (257)
Q Consensus 204 i~~~~~~~~~~~a~~~~~~m~ 224 (257)
+..|...++|.+|.++-++..
T Consensus 885 v~tCv~LnQW~~avelaq~~~ 905 (1189)
T KOG2041|consen 885 VHTCVELNQWGEAVELAQRFQ 905 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 566677777777777766543
No 351
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.27 E-value=1.1e+02 Score=24.62 Aligned_cols=56 Identities=14% Similarity=0.162 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHhhcCCchhhHHhhh
Q 043311 199 TYTAVFEAFVRAQKVDEARGLLQQMKAKG---FVPDEKAVKEALIDKRGQGFRGVINILF 255 (257)
Q Consensus 199 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~t~~~ll~~~~~~g~~~~~~~l~ 255 (257)
.|-+.|-.|.-..++..|.++++.-.+-+ -.-+..+...||.+| ..|+.+.+.++.
T Consensus 192 ~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 192 AYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 46666777777789999999999855432 233567777888776 567777777664
No 352
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=55.01 E-value=72 Score=22.46 Aligned_cols=42 Identities=24% Similarity=0.255 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHH
Q 043311 105 EALQLFAQIKDKGHMPDV-VAHTAVIEAYASAGQGKEALRVFM 146 (257)
Q Consensus 105 ~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~~~~~~a~~~~~ 146 (257)
+..++|..|.++|+-... ..|...-..+-..|++.+|.++|+
T Consensus 81 dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 81 EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 355566666666554433 234444444555566666666553
No 353
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=54.48 E-value=79 Score=22.74 Aligned_cols=52 Identities=21% Similarity=0.125 Sum_probs=22.2
Q ss_pred ccccCCCCHHHHHHHHHHHHhC-CCCCcHH-HHHHHHHhcCChHHHHHHHHHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTE-GLTNNAV-KMFDALSKDGLTHEALQLFAQIK 114 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~-~ll~~~~~~~~~~~a~~~~~~m~ 114 (257)
.+++..|+++.|++.|...... .-.++.. .=-.++.-.|+.++|++=+++..
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Al 104 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKAL 104 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHH
Confidence 3445555555555555544432 1112211 12334444455555554444433
No 354
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=54.14 E-value=1.8e+02 Score=26.79 Aligned_cols=37 Identities=11% Similarity=0.035 Sum_probs=16.4
Q ss_pred ccccCCCCHHHHHHHHHHHHhC--CCCCcHHHHHHHHHh
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTE--GLTNNAVKMFDALSK 99 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~ll~~~~~ 99 (257)
..|.++|++++|.++....... ....+....+..|..
T Consensus 119 yy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~ 157 (613)
T PF04097_consen 119 YYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYAS 157 (613)
T ss_dssp HHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTT
T ss_pred HHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHh
Confidence 4445556666665555333331 122333345555544
No 355
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=53.90 E-value=1.3e+02 Score=25.25 Aligned_cols=89 Identities=12% Similarity=0.196 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHh-----CCCCC
Q 043311 124 AHTAVIEAYASAGQGKEALRVFMRMLAS---GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG-----KGMRP 195 (257)
Q Consensus 124 ~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~-----~g~~p 195 (257)
....++...-+.+|.++|++.++++.+. --.|+.+.|.....+-++. +.|...++.+++++.++ .|++|
T Consensus 77 lvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L---~i~DLk~~kk~ldd~~~~ld~~~~v~~ 153 (380)
T KOG2908|consen 77 LVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKL---EINDLKEIKKLLDDLKSMLDSLDGVTS 153 (380)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH---hcccHHHHHHHHHHHHHHHhcccCCCh
Confidence 3445555666677888999999888754 2356777776655554443 14448888888888776 67777
Q ss_pred CHHH-HHHHHHHHHH-cCCHHH
Q 043311 196 NAGT-YTAVFEAFVR-AQKVDE 215 (257)
Q Consensus 196 ~~~~-~~~li~~~~~-~~~~~~ 215 (257)
++.+ |..+=+-|.+ .|++..
T Consensus 154 ~Vh~~fY~lssqYyk~~~d~a~ 175 (380)
T KOG2908|consen 154 NVHSSFYSLSSQYYKKIGDFAS 175 (380)
T ss_pred hhhhhHHHHHHHHHHHHHhHHH
Confidence 6643 5555554444 355443
No 356
>PF13934 ELYS: Nuclear pore complex assembly
Probab=53.70 E-value=1.1e+02 Score=24.06 Aligned_cols=113 Identities=15% Similarity=0.185 Sum_probs=62.4
Q ss_pred hCCCCCcHHHHHHHHHh--cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 043311 83 TEGLTNNAVKMFDALSK--DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY 160 (257)
Q Consensus 83 ~~~~~p~~~~ll~~~~~--~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~ 160 (257)
..++.+....+++++-. .++++.|.+.+.+- .+.|+- -.-+|.++...|+.+.|+.+++.+.-... +...-
T Consensus 72 ~f~ip~~~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~--~~~Il~~L~~~~~~~lAL~y~~~~~p~l~--s~~~~ 144 (226)
T PF13934_consen 72 AFGIPPKYIKFIQGFWLLDHGDFEEALELLSHP---SLIPWF--PDKILQALLRRGDPKLALRYLRAVGPPLS--SPEAL 144 (226)
T ss_pred HhCCCHHHHHHHHHHHHhChHhHHHHHHHhCCC---CCCccc--HHHHHHHHHHCCChhHHHHHHHhcCCCCC--CHHHH
Confidence 45666677677777754 35556666655221 122222 22477778888888888888877643221 22222
Q ss_pred HHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 043311 161 AVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211 (257)
Q Consensus 161 ~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 211 (257)
..++.. .. .+.+.+|+.+-....+. -....+..++..+....
T Consensus 145 ~~~~~~-La-----~~~v~EAf~~~R~~~~~---~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 145 TLYFVA-LA-----NGLVTEAFSFQRSYPDE---LRRRLFEQLLEHCLEEC 186 (226)
T ss_pred HHHHHH-HH-----cCCHHHHHHHHHhCchh---hhHHHHHHHHHHHHHHh
Confidence 333333 23 33477887765554331 11446777777776443
No 357
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.87 E-value=1.1e+02 Score=28.03 Aligned_cols=105 Identities=19% Similarity=0.146 Sum_probs=69.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~ 172 (257)
-.....+.|+.+.|.++..+.. +..-|..|=++....+++..|.+.|..-. -|..|+-.+...|+
T Consensus 643 rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~---------d~~~LlLl~t~~g~ 707 (794)
T KOG0276|consen 643 RFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRAR---------DLGSLLLLYTSSGN 707 (794)
T ss_pred hhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhc---------chhhhhhhhhhcCC
Confidence 3444566777777766655433 56778888888899999988888876654 35666777777555
Q ss_pred CcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043311 173 GNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223 (257)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 223 (257)
-+....+-+.-++.| ..|...-+|...|+++++.+++.+-
T Consensus 708 -----~~~l~~la~~~~~~g------~~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 708 -----AEGLAVLASLAKKQG------KNNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred -----hhHHHHHHHHHHhhc------ccchHHHHHHHcCCHHHHHHHHHhc
Confidence 333333333333333 2455566788889999988887653
No 358
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=52.40 E-value=28 Score=23.72 Aligned_cols=28 Identities=14% Similarity=0.344 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043311 123 VAHTAVIEAYASAGQGKEALRVFMRMLA 150 (257)
Q Consensus 123 ~~~~~li~~~~~~~~~~~a~~~~~~m~~ 150 (257)
.-|..|+..|...|..++|++++.++..
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3589999999999999999999999887
No 359
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=51.56 E-value=54 Score=20.04 Aligned_cols=50 Identities=16% Similarity=0.167 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043311 119 MPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169 (257)
Q Consensus 119 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~ 169 (257)
.|....++-++..+++..-++.+...+.+..+.|. .+..+|.--++.+++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 46667788888888888888888888888887774 466777777776666
No 360
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=51.43 E-value=73 Score=21.46 Aligned_cols=64 Identities=13% Similarity=0.159 Sum_probs=36.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCC
Q 043311 126 TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194 (257)
Q Consensus 126 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~ 194 (257)
..+|.-|...++.++|..-+.++... .--......++..+... +...-+....++..+.+.+..
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~--~~~~~vv~~~l~~~le~---~~~~r~~~~~Ll~~L~~~~~~ 69 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLP--SQHHEVVKVILECALEE---KKSYREYYSKLLSHLCKRKLI 69 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-G--GGHHHHHHHHHHHHHTS---SHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHhhc---cHHHHHHHHHHHHHHHhcCCC
Confidence 45666788889999999999886422 11222333344444332 123345666677777766544
No 361
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=50.49 E-value=1.3e+02 Score=25.01 Aligned_cols=70 Identities=11% Similarity=0.166 Sum_probs=34.5
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----------cCC
Q 043311 143 RVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVR----------AQK 212 (257)
Q Consensus 143 ~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----------~~~ 212 (257)
++++.|.+.++.|.-+.|-=+.-.+.. .=.+.++..+|+.+... ..-|..|+..||. .|+
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQ-----EF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~D 333 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQ-----EFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGD 333 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhc-----cCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 456666666666655544332222233 22266666666666653 1124444444432 356
Q ss_pred HHHHHHHHHH
Q 043311 213 VDEARGLLQQ 222 (257)
Q Consensus 213 ~~~a~~~~~~ 222 (257)
+....++++.
T Consensus 334 F~~nmkLLQ~ 343 (370)
T KOG4567|consen 334 FTVNMKLLQN 343 (370)
T ss_pred hHHHHHHHhc
Confidence 6666655543
No 362
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=50.49 E-value=68 Score=26.56 Aligned_cols=59 Identities=12% Similarity=0.194 Sum_probs=49.5
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043311 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169 (257)
Q Consensus 106 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~ 169 (257)
-.++|+.|++.++.|.-..+-=+.-.+...-.+..+..+|+.+.. |..-|-.++..||.
T Consensus 262 D~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 262 DEELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCS 320 (370)
T ss_pred hHHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHH
Confidence 367899999999999998888888888999999999999999975 33337888888876
No 363
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=50.17 E-value=42 Score=23.13 Aligned_cols=88 Identities=17% Similarity=0.217 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhccCCcchhHHHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 043311 139 KEALRVFMRMLAS-GVAP-NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM-VGKGMRPNAGTYTAVFEAFVRAQKVDE 215 (257)
Q Consensus 139 ~~a~~~~~~m~~~-g~~~-~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m-~~~g~~p~~~~~~~li~~~~~~~~~~~ 215 (257)
+++.+.+.++.+. |+.| |+.+=-++...+..-.- +. -..+ ...|++.+-.||. |+++.
T Consensus 6 ~~~~~~L~~Lk~~tgi~~~Nil~R~A~~~SL~~~~~-----~~-----~~~~~~d~g~e~~~~t~~---------Ge~~~ 66 (113)
T PF08870_consen 6 KKAKEQLKKLKRRTGITPWNILCRIAFCRSLEEPSI-----PS-----DEDIKDDSGLELNWKTFT---------GEYDD 66 (113)
T ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHccCCC-----CC-----CCccCCCCCeEEeeeeec---------CchHH
Confidence 4566677776643 7777 66555555544443111 11 0001 1223333333333 55555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 043311 216 ARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246 (257)
Q Consensus 216 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 246 (257)
....+=.+.. |...|...+...+.+-...|
T Consensus 67 ~~~~ll~q~~-g~~~d~~~l~~~~~~Hl~rG 96 (113)
T PF08870_consen 67 IYEALLKQRY-GPELDDEELPKYFKLHLDRG 96 (113)
T ss_pred HHHHHHHHHh-CCCCCHHHHHHHHHHHHHHh
Confidence 5554444433 55556666666666555544
No 364
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=49.60 E-value=85 Score=21.70 Aligned_cols=44 Identities=20% Similarity=0.305 Sum_probs=28.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043311 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241 (257)
Q Consensus 191 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 241 (257)
+|..|+ +|+-..++...++|+++.+-|.++| ..+...-+.|-.-
T Consensus 61 sGy~Pt------ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~ 104 (128)
T PF09868_consen 61 SGYNPT------VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSI 104 (128)
T ss_pred cCCCCh------HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 456665 4555677888888888888888887 3444444444333
No 365
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=48.89 E-value=74 Score=20.78 Aligned_cols=44 Identities=9% Similarity=0.083 Sum_probs=32.7
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 043311 183 KYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK 226 (257)
Q Consensus 183 ~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 226 (257)
++|+-.+..|+..|...|.++++-..-.--.+....+++.|...
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s~ 72 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCSG 72 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHcc
Confidence 67777777788888888888887776666777777777777643
No 366
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=48.26 E-value=1.6e+02 Score=24.41 Aligned_cols=141 Identities=20% Similarity=0.163 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH-------HH-------------------CCCCCCH
Q 043311 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRM-------LA-------------------SGVAPNA 157 (257)
Q Consensus 104 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m-------~~-------------------~g~~~~~ 157 (257)
..|+++|..+.++.- -.++-+-+|.++....+..+|...|... .. .+++.|.
T Consensus 150 ~KA~ELFayLv~hkg--k~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld~~~~k~Dv 227 (361)
T COG3947 150 RKALELFAYLVEHKG--KEVTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLDAGLPKYDV 227 (361)
T ss_pred hHHHHHHHHHHHhcC--CcccHhHHHHHHccccchhhHHHHHHHHHHHHHHHhchhccCceEEEcCCceEEecCCccccH
Confidence 456677766655421 2334445566666666665555554322 11 2345566
Q ss_pred HHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCC--------C---------HHHHHHHHHHHHHcCCHHHHHHHH
Q 043311 158 YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP--------N---------AGTYTAVFEAFVRAQKVDEARGLL 220 (257)
Q Consensus 158 ~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p--------~---------~~~~~~li~~~~~~~~~~~a~~~~ 220 (257)
.-|-..++-.....+ .++++.++....+. ++-| | ..+++..-..|..+|.+.+|..+.
T Consensus 228 ~e~es~~rqi~~inl----tide~kelv~~ykg-dyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~ 302 (361)
T COG3947 228 QEYESLARQIEAINL----TIDELKELVGQYKG-DYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLH 302 (361)
T ss_pred HHHHHHhhhhhcccc----CHHHHHHHHHHhcC-CcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 666666655444332 15555555544431 1111 1 123445556788889999999998
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhhcCCchhhHH
Q 043311 221 QQMKAKGFVPDEKAVKEALIDKRGQGFRGVIN 252 (257)
Q Consensus 221 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~ 252 (257)
++...-. +.++..+-.++..+...|+.-.+.
T Consensus 303 qr~ltld-pL~e~~nk~lm~~la~~gD~is~~ 333 (361)
T COG3947 303 QRALTLD-PLSEQDNKGLMASLATLGDEISAI 333 (361)
T ss_pred HHHhhcC-hhhhHHHHHHHHHHHHhccchhhh
Confidence 8887654 457778888888888888854443
No 367
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=47.46 E-value=91 Score=21.41 Aligned_cols=77 Identities=16% Similarity=0.197 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHH
Q 043311 103 THEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQ 182 (257)
Q Consensus 103 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~ 182 (257)
.++|..+.+.+...+- ..-.+--+-+..+.+.|++++|+ . .-.....||...|.++... + .|.-+.+.
T Consensus 22 H~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~AL--l--~~~~~~~pdL~p~~AL~a~--k-----lGL~~~~e 89 (116)
T PF09477_consen 22 HQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEAL--L--LPQCHCYPDLEPWAALCAW--K-----LGLASALE 89 (116)
T ss_dssp HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHH--H--HHTTS--GGGHHHHHHHHH--H-----CT-HHHHH
T ss_pred HHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHH--H--hcccCCCccHHHHHHHHHH--h-----hccHHHHH
Confidence 4555555555555432 11222222333455555555551 1 1112234555555555442 2 23344444
Q ss_pred HHHHHHHhC
Q 043311 183 KYLMEMVGK 191 (257)
Q Consensus 183 ~~~~~m~~~ 191 (257)
..+..+...
T Consensus 90 ~~l~rla~~ 98 (116)
T PF09477_consen 90 SRLTRLASS 98 (116)
T ss_dssp HHHHHHCT-
T ss_pred HHHHHHHhC
Confidence 444445443
No 368
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.44 E-value=1.8e+02 Score=24.62 Aligned_cols=151 Identities=9% Similarity=0.034 Sum_probs=92.2
Q ss_pred cccCCCCHHHHHHHHHHHHhCCCCCcH-HH---HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH--HH--HHHHHHHhc
Q 043311 64 VDEEPTDPRNLQEIFHKMRTEGLTNNA-VK---MFDALSKDGLTHEALQLFAQIKDKGHMPDVVA--HT--AVIEAYASA 135 (257)
Q Consensus 64 ~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~---ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~--~li~~~~~~ 135 (257)
..-..|++.+|-..|+.+.+. -|+. .+ .-++|+-.|+...-...++.+... ..+|... |- ..--++..+
T Consensus 112 i~~~~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~ 188 (491)
T KOG2610|consen 112 ILWGRGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEEC 188 (491)
T ss_pred HhhccccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHh
Confidence 444667888888888888774 2322 11 456788888888877777777654 2345433 32 233345678
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhC---CC-CCCHHHHHHHHHHHHHcC
Q 043311 136 GQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK---GM-RPNAGTYTAVFEAFVRAQ 211 (257)
Q Consensus 136 ~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~---g~-~p~~~~~~~li~~~~~~~ 211 (257)
|-+++|.+.-++-.+-+ +.|...-.+....... .|++.++.++.++-+.. +. .....-|...+ .+...+
T Consensus 189 g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem-----~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al-~~iE~a 261 (491)
T KOG2610|consen 189 GIYDDAEKQADRALQIN-RFDCWASHAKAHVLEM-----NGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTAL-FHIEGA 261 (491)
T ss_pred ccchhHHHHHHhhccCC-CcchHHHHHHHHHHHh-----cchhhhHHHHHHhcccchhhhhHHHhhhhHHHHH-hhhccc
Confidence 99999988888777654 4566666777776666 44578888776665431 11 11111122222 234447
Q ss_pred CHHHHHHHHHHHH
Q 043311 212 KVDEARGLLQQMK 224 (257)
Q Consensus 212 ~~~~a~~~~~~m~ 224 (257)
.++.|+++|++=.
T Consensus 262 eye~aleIyD~ei 274 (491)
T KOG2610|consen 262 EYEKALEIYDREI 274 (491)
T ss_pred chhHHHHHHHHHH
Confidence 8888888887643
No 369
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=46.07 E-value=2.4e+02 Score=25.89 Aligned_cols=158 Identities=15% Similarity=0.134 Sum_probs=96.3
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHH--------HHHHHHHhcCChHHHHHHHHHHHhC----CCCCCHHHHHHH-H
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAV--------KMFDALSKDGLTHEALQLFAQIKDK----GHMPDVVAHTAV-I 129 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--------~ll~~~~~~~~~~~a~~~~~~m~~~----g~~p~~~~~~~l-i 129 (257)
..+....+++.|...+.+....--.++.. -++..+.+.+... |....+...+. +..+-...|.-+ +
T Consensus 68 iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~ 146 (608)
T PF10345_consen 68 ILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKI 146 (608)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 55668889999999998765533334432 1567777777665 88877776543 222333444444 3
Q ss_pred HHHHhcCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhC--C-------CCCCH
Q 043311 130 EAYASAGQGKEALRVFMRMLASG---VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK--G-------MRPNA 197 (257)
Q Consensus 130 ~~~~~~~~~~~a~~~~~~m~~~g---~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~--g-------~~p~~ 197 (257)
..+...++...|.+.++.+...- ..|-..++..++.+......+ ..+++.+.++.+... + -.|-.
T Consensus 147 ~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~---~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL 223 (608)
T PF10345_consen 147 QLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRG---SPDDVLELLQRAIAQARSLQLDPSVHIPQL 223 (608)
T ss_pred HHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCC---CchhHHHHHHHHHHHHhhcccCCCCCcHHH
Confidence 33444489999999999887542 355566666777776654432 234455555444221 1 23455
Q ss_pred HHHHHHHHHHH--HcCCHHHHHHHHHHHH
Q 043311 198 GTYTAVFEAFV--RAQKVDEARGLLQQMK 224 (257)
Q Consensus 198 ~~~~~li~~~~--~~~~~~~a~~~~~~m~ 224 (257)
.+|..+++.++ ..|+++.+...++++.
T Consensus 224 ~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 224 KALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 67777777665 4677777777666654
No 370
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=46.07 E-value=79 Score=20.29 Aligned_cols=50 Identities=20% Similarity=0.143 Sum_probs=27.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCChHHHHHH
Q 043311 94 FDALSKDGLTHEALQLFAQIKDKGHMPDV--VAHTAVIEAYASAGQGKEALRV 144 (257)
Q Consensus 94 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~li~~~~~~~~~~~a~~~ 144 (257)
+..| .....+.|+..|....+.-..+.. .+...++.+|+.-|++.+++++
T Consensus 14 lkLY-~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 14 LKLY-HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred HHHh-ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433 455566666666666554333221 3455666666666666655544
No 371
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=44.99 E-value=1.3e+02 Score=22.33 Aligned_cols=57 Identities=14% Similarity=0.203 Sum_probs=36.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGH-MPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 151 (257)
++..-.+.++.+++..++.-++--.. .|...++..+| +...|+|.+|..+|+++...
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhcc
Confidence 44444567778888888887776311 12334444444 46678888888888887654
No 372
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=44.66 E-value=1.6e+02 Score=29.16 Aligned_cols=156 Identities=15% Similarity=0.091 Sum_probs=75.8
Q ss_pred HHHhcCChHHHHHHHHHHHhC-----CCCCCHH--HHHHHHHHHHhcC--ChHHHHHHHHHHH--HCC---CCCCHHHHH
Q 043311 96 ALSKDGLTHEALQLFAQIKDK-----GHMPDVV--AHTAVIEAYASAG--QGKEALRVFMRML--ASG---VAPNAYTYA 161 (257)
Q Consensus 96 ~~~~~~~~~~a~~~~~~m~~~-----g~~p~~~--~~~~li~~~~~~~--~~~~a~~~~~~m~--~~g---~~~~~~t~~ 161 (257)
+-....++.+-+-+++++++. .+..|.. -|...+.-+..+| -+++...+.++=. ..+ .+|+...+.
T Consensus 860 Aq~SqkDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k 939 (1265)
T KOG1920|consen 860 AQKSQKDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALALYKPDSEKQK 939 (1265)
T ss_pred HHHhccChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhheeccCHHHHH
Confidence 334566777777777776632 2333332 3666666666666 4555554443211 111 467777777
Q ss_pred HHHHHHHhccC------------CcchhHHHHHHHHHHHHh--------CCCCC--CHHH--HHHHHHHHHHcCCHHHHH
Q 043311 162 VLIKGLAAAAD------------GNAKILGDAQKYLMEMVG--------KGMRP--NAGT--YTAVFEAFVRAQKVDEAR 217 (257)
Q Consensus 162 ~ll~~~~~~~~------------~~~~~~~~a~~~~~~m~~--------~g~~p--~~~~--~~~li~~~~~~~~~~~a~ 217 (257)
.+..+|+..-. ..+|+.++|.+.+.+-.. ....+ |... -..|+.-+...+++-+|-
T Consensus 940 ~i~~~ya~hL~~~~~~~~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa 1019 (1265)
T KOG1920|consen 940 VIYEAYADHLREELMSDEAALMYERCGKLEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAA 1019 (1265)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHH
Confidence 77766654322 112334444443332210 00111 2211 145666666777777777
Q ss_pred HHHHHHHHC-----CCCCCHHHHHHHHHHhhcCCchhhH
Q 043311 218 GLLQQMKAK-----GFVPDEKAVKEALIDKRGQGFRGVI 251 (257)
Q Consensus 218 ~~~~~m~~~-----g~~p~~~t~~~ll~~~~~~g~~~~~ 251 (257)
++..+-... -+..+...|..-++.+...+..+.+
T Consensus 1020 ~il~e~~sd~~~av~ll~ka~~~~eAlrva~~~~~~d~i 1058 (1265)
T KOG1920|consen 1020 KILLEYLSDPEEAVALLCKAKEWEEALRVASKAKRDDII 1058 (1265)
T ss_pred HHHHHHhcCHHHHHHHHhhHhHHHHHHHHHHhcccchHH
Confidence 666665432 1123444444444444444433333
No 373
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=44.52 E-value=1.6e+02 Score=23.55 Aligned_cols=46 Identities=17% Similarity=0.372 Sum_probs=20.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 043311 195 PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDK 242 (257)
Q Consensus 195 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 242 (257)
|.......++..|.+ +++++|.++++++-+.|+.|.. ..+++++.+
T Consensus 237 PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp~D-ii~~~FRv~ 282 (333)
T KOG0991|consen 237 PHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSPED-IITTLFRVV 282 (333)
T ss_pred CChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCHHH-HHHHHHHHH
Confidence 344444444443332 2455555555555555555442 333444433
No 374
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=44.22 E-value=1.2e+02 Score=22.00 Aligned_cols=184 Identities=16% Similarity=0.035 Sum_probs=96.6
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHH----HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhcCC
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAV----KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE-AYASAGQ 137 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~-~~~~~~~ 137 (257)
..+...+++..+...+.........+... .....+...+....+.+.+.........+ .......-. .+...|+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 145 (291)
T COG0457 67 LALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGALYELGD 145 (291)
T ss_pred HHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCC
Confidence 45556666666666666655421111111 24445555666677777777666643333 112222222 6777777
Q ss_pred hHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHH
Q 043311 138 GKEALRVFMRMLASGV--APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQKVD 214 (257)
Q Consensus 138 ~~~a~~~~~~m~~~g~--~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~ 214 (257)
++.+...|.+...... ......+......+.. .+..+.+...+....... .. ....+..+-..+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 219 (291)
T COG0457 146 YEEALELYEKALELDPELNELAEALLALGALLEA-----LGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGKYE 219 (291)
T ss_pred HHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHH-----hcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcccHH
Confidence 7777777777744211 1223333333333444 333777777777766531 12 3556666667777777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhh
Q 043311 215 EARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINIL 254 (257)
Q Consensus 215 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l 254 (257)
.+...+.......-. ....+..+...+...|..+.+...
T Consensus 220 ~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 258 (291)
T COG0457 220 EALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEA 258 (291)
T ss_pred HHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHH
Confidence 777777777654211 133333333333344444444433
No 375
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.41 E-value=3.2e+02 Score=26.50 Aligned_cols=120 Identities=13% Similarity=0.123 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CC-CHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHh----CCCCC
Q 043311 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGV--AP-NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG----KGMRP 195 (257)
Q Consensus 123 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~~-~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~----~g~~p 195 (257)
.-|..|+..|...|+.++|+++|.+.....- .. -..-+--+++-+.+.++.+ .+.++++-+-..+ .|++.
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~---~~Li~~y~~wvl~~~p~~gi~I 581 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAEN---LDLILEYADWVLNKNPEAGIQI 581 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccc---hhHHHHHhhhhhccCchhheee
Confidence 3489999999999999999999999986321 10 1112222455444433311 2333333332222 12110
Q ss_pred ----CH---HHHH-HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcC
Q 043311 196 ----NA---GTYT-AVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245 (257)
Q Consensus 196 ----~~---~~~~-~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 245 (257)
|. .+.+ --+-.|......+.+..+++.+....-.++..-++.++.-|.+.
T Consensus 582 ft~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~ 639 (877)
T KOG2063|consen 582 FTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEK 639 (877)
T ss_pred eeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHH
Confidence 00 0110 12344667777888999999999887778888888888877654
No 376
>PHA02878 ankyrin repeat protein; Provisional
Probab=42.84 E-value=2.3e+02 Score=24.84 Aligned_cols=21 Identities=5% Similarity=0.159 Sum_probs=13.3
Q ss_pred ccccCCCCHHHHHHHHHHHHh
Q 043311 63 VVDEEPTDPRNLQEIFHKMRT 83 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~ 83 (257)
...+..|..+.+..+++....
T Consensus 75 h~A~~~g~~~~v~~Ll~~~~~ 95 (477)
T PHA02878 75 HIICKEPNKLGMKEMIRSINK 95 (477)
T ss_pred HHHHHCccHhHHHHHHHHHhc
Confidence 455667777777766665443
No 377
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=42.35 E-value=1.5e+02 Score=31.77 Aligned_cols=145 Identities=11% Similarity=0.001 Sum_probs=75.9
Q ss_pred cccCCCCHHHHHHHHHHHHhCCCCCcHH-----HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 043311 64 VDEEPTDPRNLQEIFHKMRTEGLTNNAV-----KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQG 138 (257)
Q Consensus 64 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~-----~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 138 (257)
+--+++.+.+|...|+.-.......+.. .+...|..-++++...-+.....+ +...++ -|-.....|++
T Consensus 1392 aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~~-qil~~e~~g~~ 1465 (2382)
T KOG0890|consen 1392 ASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLYQ-QILEHEASGNW 1465 (2382)
T ss_pred HHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHHH-HHHHHHhhccH
Confidence 3346777777777777642211111111 244488888888887777664222 222233 34446677888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHHcCCHHHHH
Q 043311 139 KEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGT-YTAVFEAFVRAQKVDEAR 217 (257)
Q Consensus 139 ~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~li~~~~~~~~~~~a~ 217 (257)
..|..-|+.+.+.+ ++...+++-+++.--. .|.+.......+..... ..+.... ++.=+.+..+.++||..+
T Consensus 1466 ~da~~Cye~~~q~~-p~~~~~~~g~l~sml~-----~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1466 ADAAACYERLIQKD-PDKEKHHSGVLKSMLA-----IQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred HHHHHHHHHhhcCC-CccccchhhHHHhhhc-----ccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhh
Confidence 88888888888763 2235566655554444 22244444433333322 1111222 222344445666666555
Q ss_pred HHHH
Q 043311 218 GLLQ 221 (257)
Q Consensus 218 ~~~~ 221 (257)
....
T Consensus 1539 ~~l~ 1542 (2382)
T KOG0890|consen 1539 SYLS 1542 (2382)
T ss_pred hhhh
Confidence 5544
No 378
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=42.35 E-value=2.4e+02 Score=24.89 Aligned_cols=100 Identities=13% Similarity=0.180 Sum_probs=0.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~ 172 (257)
|+.-|.-.|++.+|.....++.-- +--.-+++.+++-+.-+.|+-+..+.++++.-..|+- |-+-|-++|.+
T Consensus 515 LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglI----T~nQMtkGf~R--- 586 (645)
T KOG0403|consen 515 LLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLI----TTNQMTKGFER--- 586 (645)
T ss_pred HHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCce----eHHHhhhhhhh---
Q ss_pred CcchhHHHHHHHHHHHH--hCCCCCCHHHHHHHHHHHHHcC
Q 043311 173 GNAKILGDAQKYLMEMV--GKGMRPNAGTYTAVFEAFVRAQ 211 (257)
Q Consensus 173 ~~~~~~~~a~~~~~~m~--~~g~~p~~~~~~~li~~~~~~~ 211 (257)
+.+.+. ...++-...-|+..+.-|.++|
T Consensus 587 -----------V~dsl~DlsLDvPna~ekf~~~Ve~~~~~G 616 (645)
T KOG0403|consen 587 -----------VYDSLPDLSLDVPNAYEKFERYVEECFQNG 616 (645)
T ss_pred -----------hhccCcccccCCCcHHHHHHHHHHHHHHcC
No 379
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=42.17 E-value=2.2e+02 Score=24.42 Aligned_cols=56 Identities=11% Similarity=-0.140 Sum_probs=40.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH----HHH--HhcCChHHHHHHHHHH
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI----EAY--ASAGQGKEALRVFMRM 148 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li----~~~--~~~~~~~~a~~~~~~m 148 (257)
....+.+.+++..|.++|+++.+...+|+...+-..+ .+| ...-++++|.+.++.+
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~~ 197 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLNDP 197 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhhc
Confidence 4557788999999999999999987666655433333 332 3456889999999864
No 380
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=42.05 E-value=99 Score=20.29 Aligned_cols=56 Identities=14% Similarity=0.201 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 198 GTYTAVFEAFVRAQKVDEARGLLQQMKAK-GFVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 198 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
.....+-.-|-+.|-.+.+.+++.+.... |-. .|...|+.++..++....|+.+++
T Consensus 33 ~~ID~I~~~y~r~gL~EqvyQ~L~~W~~~eg~~---Atv~~Lv~AL~~c~l~~lAe~l~~ 89 (90)
T cd08780 33 PAIDNLAYEYDREGLYEQAYQLLRRFIQSEGKK---ATLQRLVQALEENGLTSLAEDLLG 89 (90)
T ss_pred hHHHHHHhhcccccHHHHHHHHHHHHHHhcccc---chHHHHHHHHHHccchHHHHHHhc
Confidence 33444445566777888888888888764 543 688888888888888888887764
No 381
>PRK13342 recombination factor protein RarA; Reviewed
Probab=41.93 E-value=2.3e+02 Score=24.49 Aligned_cols=36 Identities=25% Similarity=0.155 Sum_probs=20.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 043311 211 QKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246 (257)
Q Consensus 211 ~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 246 (257)
.+.+.|...+.+|.+.|..|....-..++.++...|
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 566666666666666666666444444444444444
No 382
>PF05664 DUF810: Protein of unknown function (DUF810); InterPro: IPR008528 This family consists of several plant proteins of unknown function.
Probab=41.30 E-value=2.1e+02 Score=26.74 Aligned_cols=85 Identities=14% Similarity=0.181 Sum_probs=55.9
Q ss_pred CCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHh----CCCCCCHHH---HHHHHHHHHHcCCHHHH---HHHHH
Q 043311 152 GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG----KGMRPNAGT---YTAVFEAFVRAQKVDEA---RGLLQ 221 (257)
Q Consensus 152 g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~----~g~~p~~~~---~~~li~~~~~~~~~~~a---~~~~~ 221 (257)
|.+.|...|..|+.++....| +...++++.++++-++. .|+.+..+. -..+++-|+..|+.+.. ...+.
T Consensus 212 gyplN~~LYe~LL~~~FD~~d-e~~vidE~dEvlellK~tW~~LGIt~~lHn~cf~WVlF~qyv~tge~~LL~~a~~~L~ 290 (677)
T PF05664_consen 212 GYPLNVRLYEKLLFSVFDILD-EGQVIDEVDEVLELLKKTWSILGITQTLHNVCFAWVLFRQYVATGEPDLLKAAIQQLQ 290 (677)
T ss_pred CCCccHHHHHHHHHHHhcccc-cchHHhhHHHHHHHHHHHhHHhCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 678899999999999988777 13345788888877764 577765542 34677889999976554 44444
Q ss_pred HHHHCCC-CCCHHHHHH
Q 043311 222 QMKAKGF-VPDEKAVKE 237 (257)
Q Consensus 222 ~m~~~g~-~p~~~t~~~ 237 (257)
+.....- .+....|..
T Consensus 291 ev~~d~~~~~~~~~y~~ 307 (677)
T PF05664_consen 291 EVAKDAKRATKDPLYLK 307 (677)
T ss_pred HHHHhccccccchhhhh
Confidence 4444322 344444443
No 383
>PF14744 WASH-7_mid: WASH complex subunit 7
Probab=40.94 E-value=98 Score=26.04 Aligned_cols=31 Identities=13% Similarity=0.127 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 043311 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168 (257)
Q Consensus 138 ~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~ 168 (257)
++.|.++.+.+++.|+.+|-.||--..+.+.
T Consensus 282 ~erAekf~k~irkLG~~~dG~sylD~FR~LI 312 (350)
T PF14744_consen 282 YERAEKFNKGIRKLGLSDDGQSYLDQFRQLI 312 (350)
T ss_pred HHHHHHHHHHHHHcCCCCCcchHHHHHHHHH
Confidence 4556666666666666666566555555443
No 384
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=40.42 E-value=2.6e+02 Score=24.73 Aligned_cols=188 Identities=10% Similarity=0.033 Sum_probs=90.4
Q ss_pred ccccCCCCHHHHHHHHHHHHhC--CCCCcHH---------------HHHHHHHhcCChHHHHHHHHHHHhCCCC----CC
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTE--GLTNNAV---------------KMFDALSKDGLTHEALQLFAQIKDKGHM----PD 121 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~---------------~ll~~~~~~~~~~~a~~~~~~m~~~g~~----p~ 121 (257)
..+-+.++++.|.+.+..-... +..|... ....++...|.+.+++.+++.|.+.=++ -+
T Consensus 87 L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~ 166 (549)
T PF07079_consen 87 LVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWN 166 (549)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhccc
Confidence 4455666777766665544432 3333221 1344556677777777766666554222 56
Q ss_pred HHHHHHHHHHHHhcCChHH---------------HHHHHHHHHHC------CCCCCHHHHHHHHHHHHhccCCcchhHHH
Q 043311 122 VVAHTAVIEAYASAGQGKE---------------ALRVFMRMLAS------GVAPNAYTYAVLIKGLAAAADGNAKILGD 180 (257)
Q Consensus 122 ~~~~~~li~~~~~~~~~~~---------------a~~~~~~m~~~------g~~~~~~t~~~ll~~~~~~~~~~~~~~~~ 180 (257)
+.+||.++-.++++--++. +.-+..+|... .+.|-..-+..++.+..-... .+..-
T Consensus 167 ~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~---e~l~~ 243 (549)
T PF07079_consen 167 SDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPK---ERLPP 243 (549)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCH---hhccH
Confidence 6677776666666642221 11111222211 123333334444443332111 11222
Q ss_pred HHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHhhcCCchhhHHhhh
Q 043311 181 AQKYLMEMVGKGMRPNAG-TYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP----DEKAVKEALIDKRGQGFRGVINILF 255 (257)
Q Consensus 181 a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p----~~~t~~~ll~~~~~~g~~~~~~~l~ 255 (257)
-.+++..-+..-+.|+-. ....|+..+.. +.+++..+-+.+....+.+ =..+|..++..+...++...|.+.+
T Consensus 244 ~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l 321 (549)
T PF07079_consen 244 LMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYL 321 (549)
T ss_pred HHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 223333333344555543 23444444444 4455555544444332221 2357777888888888877776654
No 385
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=40.29 E-value=25 Score=21.39 Aligned_cols=14 Identities=29% Similarity=0.496 Sum_probs=7.0
Q ss_pred hHHHHHHHHHHHhC
Q 043311 103 THEALQLFAQIKDK 116 (257)
Q Consensus 103 ~~~a~~~~~~m~~~ 116 (257)
++.|...|.++...
T Consensus 41 ~~~Al~~F~~lk~~ 54 (63)
T smart00804 41 YERALKNFTELKSE 54 (63)
T ss_pred HHHHHHHHHHHHhc
Confidence 44455555555543
No 386
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=40.20 E-value=2.8e+02 Score=24.94 Aligned_cols=36 Identities=14% Similarity=0.087 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCc
Q 043311 212 KVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGF 247 (257)
Q Consensus 212 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 247 (257)
+.+.+...+-+|.-.|+..++.|....+...+++-+
T Consensus 313 ~~k~~~~~~~dll~aGvDTTs~tl~~~Ly~LarnP~ 348 (519)
T KOG0159|consen 313 SRKDAKANVMDLLAAGVDTTSNTLLWALYELARNPE 348 (519)
T ss_pred CHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcChH
Confidence 445555555555555555555555555555554443
No 387
>PF13934 ELYS: Nuclear pore complex assembly
Probab=39.92 E-value=1.8e+02 Score=22.77 Aligned_cols=109 Identities=18% Similarity=0.128 Sum_probs=69.4
Q ss_pred CCCCCcccccc-ccccCCCCHHHHHHHHHHHHhCCCCCcHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043311 52 KLPPPYDPFKK-VVDEEPTDPRNLQEIFHKMRTEGLTNNAV-KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI 129 (257)
Q Consensus 52 ~~~p~~~~~~~-~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 129 (257)
++++....+.- ..+-..++++.|.+.+- ...+.|+.. .++.++...|+.+.|..++....-... +...-+.++
T Consensus 74 ~ip~~~~~~~~g~W~LD~~~~~~A~~~L~---~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~--s~~~~~~~~ 148 (226)
T PF13934_consen 74 GIPPKYIKFIQGFWLLDHGDFEEALELLS---HPSLIPWFPDKILQALLRRGDPKLALRYLRAVGPPLS--SPEALTLYF 148 (226)
T ss_pred CCCHHHHHHHHHHHHhChHhHHHHHHHhC---CCCCCcccHHHHHHHHHHCCChhHHHHHHHhcCCCCC--CHHHHHHHH
Confidence 34433333333 34456688888887773 334456644 599999999999999999888654322 223334444
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043311 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169 (257)
Q Consensus 130 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~ 169 (257)
.. ..++.+.+|+.+-+...+.. ....+..++..+..
T Consensus 149 ~~-La~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 149 VA-LANGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCLE 184 (226)
T ss_pred HH-HHcCCHHHHHHHHHhCchhh---hHHHHHHHHHHHHH
Confidence 44 66688999998887766421 14577777777765
No 388
>cd00245 Glm_e Coenzyme B12-dependent glutamate mutase epsilon subunit-like family; contains proteins similar to Clostridium cochlearium glutamate mutase (Glm) and Streptomyces tendae Tu901 NikV. Glm catalyzes a carbon-skeleton rearrangement of L-glutamate to L-threo-3-methylaspartate. The first step in the catalysis is a homolytic cleavage of the Co-C bond of the coenzyme B12 cofactor to generate a 5'-deoxyadenosyl radical. This radical then initiates the rearrangement reaction. C. cochlearium Glm is a sigma2epsilon2 heterotetramer. Glm plays a role in glutamate fermentation in Clostridium sp. and in members of the family Enterobacteriaceae, and in the synthesis of the lipopeptide antibiotic friulimicin in Actinoplanes friuliensis. S. tendae Tu901 glutamate mutase-like proteins NikU and NIkV participate in the synthesis of the peptidyl nucleoside antibiotic nikkomycin. NikU and NikV proteins have sequence similarity to Clostridium Glm sigma and epsilon components respectively, and may
Probab=39.91 E-value=2.1e+02 Score=25.06 Aligned_cols=155 Identities=15% Similarity=0.126 Sum_probs=76.2
Q ss_pred CCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHhcCChHHHHHHHHHHHhC------CCC---CCHHHHHHHHHHH-----H
Q 043311 68 PTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDK------GHM---PDVVAHTAVIEAY-----A 133 (257)
Q Consensus 68 ~~~~~~a~~~~~~m~~~~~~p~~~~ll~~~~~~~~~~~a~~~~~~m~~~------g~~---p~~~~~~~li~~~-----~ 133 (257)
.+.+++-.++++.+.+.|...-...-++.|.+.++++.|.+...+-.+. |++ -.+..+-.|+.+. .
T Consensus 24 ~~~~~e~~~~l~~l~~~g~~dvl~ltiDsytr~~~~~~a~~~l~~~~~~~~~~lnG~P~v~~g~~~~R~l~~~~~~Plqv 103 (428)
T cd00245 24 FPLLEEHIELLRTLQEEGAADVLPLTIDSYTRVNDYEEAEEGLEESIKAGKSLLNGFPIVNHGVKTCRKLLEGVDFPVQV 103 (428)
T ss_pred CCCHHHHHHHHHHHHhcCCCCeeccccccchhhhhhHHHHHHHHhhhhcCccccCCCCcccccHHHHHHHHHhCCCCEee
Confidence 3567777777777777663332223567778888888877777665322 221 1222333333332 1
Q ss_pred hcCChHHHHHHHHHHHHCCCCC---CHHHHHH-------HHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 043311 134 SAGQGKEALRVFMRMLASGVAP---NAYTYAV-------LIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAV 203 (257)
Q Consensus 134 ~~~~~~~a~~~~~~m~~~g~~~---~~~t~~~-------ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 203 (257)
++| ...+..+++-+...|+.- -..+|+. |-++... |..+.++.....+.|+..+..+|..+
T Consensus 104 RhG-t~d~~~l~e~~~a~g~~a~egg~isy~~py~k~~~Le~si~~--------wqy~~rl~~~y~e~gv~in~E~fg~l 174 (428)
T cd00245 104 RHG-TPDARLLAEIAIASGFDATEGGPISYNLPYSKNVPLEKSIEN--------WQYCDRLVGFYEENGVPINREPFGPL 174 (428)
T ss_pred ccC-CccHHHHHHHHHHhCcccccccceeeccccCCCCCHHHHHHH--------HHHHHHHHHHHHhcCceecccCCcCc
Confidence 222 234455555555544322 1233332 1111111 33333344444456776666666654
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 043311 204 FEAFVRAQKVDEARGLLQQMKAKGFVPDE 232 (257)
Q Consensus 204 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 232 (257)
...++ -.-+..|..+++.+...|.-.+.
T Consensus 175 ~~~l~-pptla~aiaylea~la~glgV~~ 202 (428)
T cd00245 175 TGTLV-PPSILIAIQILEALLAAEQGVKS 202 (428)
T ss_pred ccCcC-CcHHHHHHHHHHHHHHccCCCCE
Confidence 42222 22355666666666666555544
No 389
>COG5210 GTPase-activating protein [General function prediction only]
Probab=39.82 E-value=2.7e+02 Score=24.77 Aligned_cols=60 Identities=13% Similarity=0.137 Sum_probs=37.5
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043311 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165 (257)
Q Consensus 106 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~ 165 (257)
.-+++..+.+.|+.+...++.-++..+.+...++.+..+++.+--.|.......+.+++.
T Consensus 361 ~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~~~l~~~~~~~l~ 420 (496)
T COG5210 361 DPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSSMLFQLALAILK 420 (496)
T ss_pred HHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 345566666666666677777777777777777777777777666655544444444433
No 390
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=39.59 E-value=2.1e+02 Score=23.36 Aligned_cols=16 Identities=6% Similarity=0.252 Sum_probs=7.9
Q ss_pred chhHHHHHHHHHHHHh
Q 043311 175 AKILGDAQKYLMEMVG 190 (257)
Q Consensus 175 ~~~~~~a~~~~~~m~~ 190 (257)
.+....+.+.|.+...
T Consensus 143 ~~~~~~a~~~~~~~~~ 158 (324)
T PF11838_consen 143 PECVAEARELFKAWLD 158 (324)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhc
Confidence 3335555555555444
No 391
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=39.52 E-value=1.1e+02 Score=20.06 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=20.9
Q ss_pred chhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 043311 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217 (257)
Q Consensus 175 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 217 (257)
.|+.+.|.+++..+. .| ..-|..++++.-..|.-+.|.
T Consensus 49 ~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 49 HGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred cCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhhh
Confidence 344666666666665 32 334555666666665544443
No 392
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=39.37 E-value=2.7e+02 Score=24.52 Aligned_cols=117 Identities=10% Similarity=0.082 Sum_probs=58.5
Q ss_pred HHHHHhcCChHHHHHHHH--HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH-----------------CCCC
Q 043311 94 FDALSKDGLTHEALQLFA--QIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA-----------------SGVA 154 (257)
Q Consensus 94 l~~~~~~~~~~~a~~~~~--~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----------------~g~~ 154 (257)
.....-.++++.+.+... ++... .+....+.++.-+.+.|..+.|+++-.+-.. ....
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~~---i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~ 344 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLPN---IPKDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKEL 344 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGGG-----HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCC
T ss_pred HHHHHHcCChhhhhhhhhhhhhccc---CChhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhc
Confidence 344455777888666553 11111 1245578888888888888888776543221 1122
Q ss_pred CCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 043311 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227 (257)
Q Consensus 155 ~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 227 (257)
.+...|..|-+...+ .|+++.|++.|+... -|..|+--|.-.|+.+...++.+....+|
T Consensus 345 ~~~~~W~~Lg~~AL~-----~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 345 DDPEKWKQLGDEALR-----QGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp STHHHHHHHHHHHHH-----TTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHH-----cCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 355566666666666 333666666665542 23444445555566555555555555444
No 393
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=39.17 E-value=42 Score=15.22 Aligned_cols=27 Identities=15% Similarity=0.165 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043311 199 TYTAVFEAFVRAQKVDEARGLLQQMKA 225 (257)
Q Consensus 199 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 225 (257)
.|..+-..+...|+++.|...+++..+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 455666777888889999988887764
No 394
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=39.04 E-value=1.1e+02 Score=22.91 Aligned_cols=114 Identities=11% Similarity=0.151 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHh----CCCCCcHHHHHHHHHh-cCChHHHHHHHHHHHhCC----CCCCH---HHHHHHHHHHHhcCCh
Q 043311 71 PRNLQEIFHKMRT----EGLTNNAVKMFDALSK-DGLTHEALQLFAQIKDKG----HMPDV---VAHTAVIEAYASAGQG 138 (257)
Q Consensus 71 ~~~a~~~~~~m~~----~~~~p~~~~ll~~~~~-~~~~~~a~~~~~~m~~~g----~~p~~---~~~~~li~~~~~~~~~ 138 (257)
.+...+++..... .|..+....+...+.. .++.++|..+|..+.+.. +.++. ......+..+.+..+
T Consensus 72 ~~~L~~IL~~~~~~~p~~gY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~- 150 (199)
T smart00164 72 QESLRRVLKAYALYNPEVGYCQGMNFLAAPLLLVMPDEEDAFWCLVKLMERYGPNFYLPDMSGLQLDLLQLDRLVKEYD- 150 (199)
T ss_pred HHHHHHHHHHHHHHCCCCceeccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhCcccCCCChHHHHHHHHHHHHHHHHHC-
Confidence 3344445444432 2444444433333322 335677888877775542 33442 233334444444443
Q ss_pred HHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCC
Q 043311 139 KEALRVFMRMLA-SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193 (257)
Q Consensus 139 ~~a~~~~~~m~~-~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~ 193 (257)
-+++..+.+ .|+.+...++.=++..+++.-. ++.+..+|+.+...|.
T Consensus 151 ---p~l~~~l~~~~~i~~~~~~~~W~~~lF~~~~~-----~~~~~riwD~~l~eG~ 198 (199)
T smart00164 151 ---PDLYKHLKDKLGIDPSLYALRWFLTLFARELP-----LEIVLRIWDVLFAEGS 198 (199)
T ss_pred ---HHHHHHHHHhcCCCchhHHHHHHHHHHHhhCC-----HHHHHHHHHHHHhcCC
Confidence 356677775 8899999888888888887333 9999999999887664
No 395
>PHA02874 ankyrin repeat protein; Provisional
Probab=38.97 E-value=2.5e+02 Score=24.30 Aligned_cols=16 Identities=6% Similarity=0.096 Sum_probs=8.6
Q ss_pred ccccCCCCHHHHHHHH
Q 043311 63 VVDEEPTDPRNLQEIF 78 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~ 78 (257)
...++.|+.+.+..++
T Consensus 40 ~~A~~~g~~~iv~~Ll 55 (434)
T PHA02874 40 IDAIRSGDAKIVELFI 55 (434)
T ss_pred HHHHHcCCHHHHHHHH
Confidence 4445566666555443
No 396
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=38.74 E-value=2.3e+02 Score=23.64 Aligned_cols=19 Identities=21% Similarity=0.045 Sum_probs=15.1
Q ss_pred HHHHHHHHHhhcCCchhhH
Q 043311 233 KAVKEALIDKRGQGFRGVI 251 (257)
Q Consensus 233 ~t~~~ll~~~~~~g~~~~~ 251 (257)
.+|+-|+.+++..|..+..
T Consensus 322 K~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 322 KQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HhhhHHHHHHhcCChHHHH
Confidence 5788888888888887654
No 397
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=38.41 E-value=3.5e+02 Score=25.52 Aligned_cols=85 Identities=15% Similarity=0.138 Sum_probs=44.8
Q ss_pred HHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCC---C----------CCCHHHHHHHH
Q 043311 139 KEALRVFMRML-ASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG---M----------RPNAGTYTAVF 204 (257)
Q Consensus 139 ~~a~~~~~~m~-~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g---~----------~p~~~~~~~li 204 (257)
++....+.... +.|+..+......+++... | .+..+..+++.+...| + ..+...+..|+
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~--G-----slRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~Ll 253 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAAA--G-----SMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELL 253 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHhC--C-----CHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHH
Confidence 34444444333 3466666666555555331 2 2556666655443321 1 11223344455
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 043311 205 EAFVRAQKVDEARGLLQQMKAKGFVPD 231 (257)
Q Consensus 205 ~~~~~~~~~~~a~~~~~~m~~~g~~p~ 231 (257)
+++.. ++...++.++++|...|+.+.
T Consensus 254 dAL~~-~d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 254 TGIIN-QDGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred HHHHc-CCHHHHHHHHHHHHHhCCCHH
Confidence 54444 677888888888888777554
No 398
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=38.06 E-value=99 Score=19.18 Aligned_cols=40 Identities=23% Similarity=0.355 Sum_probs=27.9
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC
Q 043311 133 ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 133 ~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~ 172 (257)
...++.+.+.+++++..+.|..|.......+..+....|+
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG~ 51 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIGE 51 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 3456778888888888877777777777777777666443
No 399
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=37.59 E-value=92 Score=22.47 Aligned_cols=27 Identities=19% Similarity=0.395 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043311 178 LGDAQKYLMEMVGKGMRPNAGTYTAVF 204 (257)
Q Consensus 178 ~~~a~~~~~~m~~~g~~p~~~~~~~li 204 (257)
+.+...++++|.++|+..+...|+-++
T Consensus 125 isk~Kpild~LI~~GF~iS~~~~eeiL 151 (157)
T COG2405 125 ISKDKPILDELIEKGFRISRSILEEIL 151 (157)
T ss_pred ccchHHHHHHHHHhcCcccHHHHHHHH
Confidence 444444444444444444444444433
No 400
>PF08780 NTase_sub_bind: Nucleotidyltransferase substrate binding protein like; InterPro: IPR010235 The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins []. It forms a complex with HI0073 (P43933 from SWISSPROT), encoded by the adjacent gene, which contains a nucleotidyltransferase nucleotide binding domain (IPR002934 from INTERPRO). Double- and single-stranded DNA binding assays showed no evidence of DNA binding to HI0074 or to HI0073/HI0074 complex despite the suggestive shape of the putative binding cleft formed by the HI0074 dimer []. ; PDB: 1WWP_A 1JOG_A 1WTY_C 2YWA_B.
Probab=37.42 E-value=1.4e+02 Score=20.82 Aligned_cols=75 Identities=19% Similarity=0.171 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 043311 139 KEALRVFMRMLASG-VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV-GKGMRPNAGTYTAVFEAFVRAQKVDEA 216 (257)
Q Consensus 139 ~~a~~~~~~m~~~g-~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~-~~g~~p~~~~~~~li~~~~~~~~~~~a 216 (257)
.+|+.-+++..... -.++......+|+.+.- . +|.+++++.... ..|+. +..+-..+++...+.|-+++.
T Consensus 7 ~kAl~~L~ea~~~~~~~~~~~~~dg~IqrFE~-----t--~ElaWK~lK~~L~~~G~~-~~~spr~~~r~A~~~glI~d~ 78 (124)
T PF08780_consen 7 KKALSRLEEALEKYEDPLSELERDGVIQRFEF-----T--FELAWKTLKDYLEYEGIS-ECNSPRDVFREAFKAGLIDDG 78 (124)
T ss_dssp HHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHH-----H--HHHHHHHHHHHHHHCTSS-CCTSHHHHHHHHHHTTSSSHH
T ss_pred HHHHHHHHHHHHhccCcchHHHHHHHHHHHHH-----H--HHHHHHHHHHHHHHhCCc-ccCCHHHHHHHHHHcCCCCCH
Confidence 44444444444321 23344555555555544 2 566666666633 34553 333335555555555555444
Q ss_pred HHHHH
Q 043311 217 RGLLQ 221 (257)
Q Consensus 217 ~~~~~ 221 (257)
...++
T Consensus 79 e~Wl~ 83 (124)
T PF08780_consen 79 EIWLD 83 (124)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44333
No 401
>PF11740 KfrA_N: Plasmid replication region DNA-binding N-term; InterPro: IPR021104 The KfrA family of protiens are encoded on plasmids, generally in or near gene clusters invloved in stable inheritance functions. These proteins are thought to form an all-helical structure, consisting of an N-terminal helix-turn-helix DNA binding domain and an extended coiled-coil tail. The best-characterised KfrA protein, encoded on the broad host-range Plasmid RK2, is a site-specific DNA-binding protein whose operator overlaps its own promoter. The DNA-binding domain is essential for function, while the coiled-coil domain is probably responsible for formation of multimers, and may provide an example of a bridge to host structures required for plasmid partitioning []. This entry represents the N-terminal DNA-binding domain.
Probab=36.60 E-value=1.4e+02 Score=20.41 Aligned_cols=44 Identities=9% Similarity=0.162 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhCCCCCcHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 043311 72 RNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDK 116 (257)
Q Consensus 72 ~~a~~~~~~m~~~~~~p~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 116 (257)
+.+....+.+...|..|+...+-..+. .|......++++.+...
T Consensus 4 e~V~~Aa~~L~~~G~~pT~~~Vr~~lG-~GS~~ti~~~l~~w~~~ 47 (120)
T PF11740_consen 4 EDVIEAADELLAAGKKPTVRAVRERLG-GGSMSTISKHLKEWREE 47 (120)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHC-CCCHHHHHHHHHHHHHh
Confidence 455666677777777777765555555 77777777777777654
No 402
>PF12816 Vps8: Golgi CORVET complex core vacuolar protein 8
Probab=36.38 E-value=72 Score=24.41 Aligned_cols=59 Identities=10% Similarity=0.130 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043311 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223 (257)
Q Consensus 155 ~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 223 (257)
+....+..++..|.. .|+.+..++++-.| .|+.--.+.++..|-+.|-++.-.-++.+.
T Consensus 20 lpp~v~k~lv~~y~~-----~~~~~~lE~lI~~L-----D~~~LDidq~i~lC~~~~LydalIYv~n~~ 78 (196)
T PF12816_consen 20 LPPEVFKALVEHYAS-----KGRLERLEQLILHL-----DPSSLDIDQVIKLCKKHGLYDALIYVWNRA 78 (196)
T ss_pred CCHHHHHHHHHHHHH-----CCCHHHHHHHHHhC-----CHHhcCHHHHHHHHHHCCCCCeeeeeeecc
Confidence 455555555555555 22244444444443 122222344555555555554444444443
No 403
>PF00531 Death: Death domain; InterPro: IPR000488 The death domain (DD) is a homotypic protein interaction module composed of a bundle of six alpha-helices. DD is related in sequence and structure to the death effector domain (DED, see IPR001875 from INTERPRO) and the caspase recruitment domain (CARD, see IPR001315 from INTERPRO), which work in similar pathways and show similar interaction properties []. DD bind each other forming oligomers. Mammals have numerous and diverse DD-containing proteins []. Within these proteins, the DD domains can be found in combination with other domains, including: CARDs, DEDs, ankyrin repeats (IPR002110 from INTERPRO), caspase-like folds, kinase domains, leucine zippers (IPR002158 from INTERPRO), leucine-rich repeats (LRR) (IPR001611 from INTERPRO), TIR domains (IPR000157 from INTERPRO), and ZU5 domains (IPR000906 from INTERPRO) []. Some DD-containing proteins are involved in the regulation of apoptosis and inflammation through their activation of caspases and NF-kappaB, which typically involves interactions with TNF (tumour necrosis factor) cytokine receptors [, ]. In humans, eight of the over 30 known TNF receptors contain DD in their cytoplasmic tails; several of these TNF receptors use caspase activation as a signalling mechanism. The DD mediates self-association of these receptors, thus giving the signal to downstream events that lead to apoptosis. Other DD-containing proteins, such as ankyrin, MyD88 and pelle, are probably not directly involved in cell death signalling. DD-containing proteins also have links to innate immunity, communicating with Toll family receptors through bipartite adapter proteins such as MyD88 [].; GO: 0005515 protein binding, 0007165 signal transduction; PDB: 3OQ9_L 3EZQ_F 1E41_A 1E3Y_A 2GF5_A 2OF5_L 3EWV_E 3G5B_A 3MOP_L 2A9I_A ....
Probab=36.21 E-value=1e+02 Score=19.26 Aligned_cols=57 Identities=14% Similarity=0.313 Sum_probs=32.9
Q ss_pred CCCCcHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 043311 85 GLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRV 144 (257)
Q Consensus 85 ~~~p~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~ 144 (257)
|+..+...-+...... ..+.+.+++....+. .....+...|+.++.+.|+.+-|..+
T Consensus 23 g~~~~~i~~i~~~~~~-~~~~~~~~L~~W~~~--~~~~at~~~L~~aL~~~~~~d~~~~i 79 (83)
T PF00531_consen 23 GLSESEIENIEEENPD-LREQTYEMLQRWRQR--EGPNATVDQLIQALRDIGRNDLAEKI 79 (83)
T ss_dssp TS-HHHHHHHHHHSTS-HHHHHHHHHHHHHHH--HGSTSSHHHHHHHHHHTTHHHHHHHH
T ss_pred CcCHHHHHHHHHhCCC-hHHHHHHHHHHHHHh--cCCCCcHHHHHHHHHHCCcHHHHHHH
Confidence 4444433334442222 345677777777665 34566777888888888876555444
No 404
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=35.91 E-value=85 Score=19.15 Aligned_cols=44 Identities=20% Similarity=0.292 Sum_probs=26.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCc
Q 043311 204 FEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGF 247 (257)
Q Consensus 204 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 247 (257)
++.+...+.+-....+.+.+...|...+..+....+.+..+.|.
T Consensus 4 L~~L~~~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~Gl 47 (66)
T PF08461_consen 4 LRILAESDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDGL 47 (66)
T ss_pred HHHHHHcCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCCC
Confidence 34444555555555666666666666666666666666666653
No 405
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=35.85 E-value=2.5e+02 Score=23.22 Aligned_cols=23 Identities=13% Similarity=0.252 Sum_probs=15.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 043311 201 TAVFEAFVRAQKVDEARGLLQQM 223 (257)
Q Consensus 201 ~~li~~~~~~~~~~~a~~~~~~m 223 (257)
.-+|..+.+.|.+.+|..+...+
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHH
Confidence 44677777888888777654433
No 406
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=35.72 E-value=56 Score=15.59 Aligned_cols=14 Identities=21% Similarity=0.361 Sum_probs=7.1
Q ss_pred ChHHHHHHHHHHHH
Q 043311 137 QGKEALRVFMRMLA 150 (257)
Q Consensus 137 ~~~~a~~~~~~m~~ 150 (257)
+.+.|..+|+.+..
T Consensus 2 ~~~~~r~i~e~~l~ 15 (33)
T smart00386 2 DIERARKIYERALE 15 (33)
T ss_pred cHHHHHHHHHHHHH
Confidence 34455555555543
No 407
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=35.65 E-value=1.1e+02 Score=22.02 Aligned_cols=43 Identities=16% Similarity=0.191 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 043311 199 TYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDK 242 (257)
Q Consensus 199 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 242 (257)
|...++. +-+.|-..+...++++|...|+..+..+|..++.-.
T Consensus 112 tlGvL~~-ak~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~~ 154 (157)
T COG2405 112 TLGVLAL-AKSKGLISKDKPILDELIEKGFRISRSILEEILRKL 154 (157)
T ss_pred hhHHHHH-HHHcCcccchHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence 4444444 345678888999999999999999999999988754
No 408
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=35.46 E-value=4e+02 Score=25.42 Aligned_cols=127 Identities=19% Similarity=0.274 Sum_probs=77.4
Q ss_pred HHHHHHHHhCCCCCcH-----H-HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH----------HHHHHHHHHHhcCCh
Q 043311 75 QEIFHKMRTEGLTNNA-----V-KMFDALSKDGLTHEALQLFAQIKDKGHMPDVV----------AHTAVIEAYASAGQG 138 (257)
Q Consensus 75 ~~~~~~m~~~~~~p~~-----~-~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----------~~~~li~~~~~~~~~ 138 (257)
...+++|.+.--.|+. + .++-.|.-..+++...++.+.+++- ||+. .|.-.++---+-||-
T Consensus 183 ~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDR 259 (1226)
T KOG4279|consen 183 NDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDR 259 (1226)
T ss_pred HHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccH
Confidence 3455666664333332 2 3666777778888899999988875 4321 244455555566888
Q ss_pred HHHHHHHHHHHHC-C-CCCCHHHHHHHH--HHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHH---HHHHHHH
Q 043311 139 KEALRVFMRMLAS-G-VAPNAYTYAVLI--KGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGT---YTAVFEA 206 (257)
Q Consensus 139 ~~a~~~~~~m~~~-g-~~~~~~t~~~ll--~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~---~~~li~~ 206 (257)
++|+.+.-.|.+. | +.||..+..--| ..+...+-.+.+..+.|.+.|.+.-+ +.|+..+ +.+|+.+
T Consensus 260 akAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~a 332 (1226)
T KOG4279|consen 260 AKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRA 332 (1226)
T ss_pred HHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHH
Confidence 9999998888755 3 778875543222 23334443446678888888876543 4565543 4455443
No 409
>PHA02798 ankyrin-like protein; Provisional
Probab=35.41 E-value=2.7e+02 Score=24.63 Aligned_cols=51 Identities=16% Similarity=0.221 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 043311 105 EALQLFAQIKDKGHMPDVV---AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA 157 (257)
Q Consensus 105 ~a~~~~~~m~~~g~~p~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 157 (257)
...++.+.+.+.|..++.. -.+.+..+ +..+.. .-.++.+.+.+.|..++.
T Consensus 87 ~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a-~~~~~~-~~~~iv~~Ll~~Gadvn~ 140 (489)
T PHA02798 87 HMLDIVKILIENGADINKKNSDGETPLYCL-LSNGYI-NNLEILLFMIENGADTTL 140 (489)
T ss_pred hHHHHHHHHHHCCCCCCCCCCCcCcHHHHH-HHcCCc-ChHHHHHHHHHcCCCccc
Confidence 3467777777888766543 23344433 333322 234556666677766544
No 410
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=35.35 E-value=35 Score=28.72 Aligned_cols=45 Identities=13% Similarity=0.017 Sum_probs=0.0
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCchhhHHh
Q 043311 207 FVRAQKVDEARGLLQQMKAKGFVP-DEKAVKEALIDKRGQGFRGVINI 253 (257)
Q Consensus 207 ~~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~~~~ 253 (257)
|.+.|.+++|+++|.+-.. +.| |.+++..-..+|.+...+..|+.
T Consensus 107 yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~ 152 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEE 152 (536)
T ss_pred hhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHH
No 411
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=35.33 E-value=3.4e+02 Score=24.58 Aligned_cols=34 Identities=26% Similarity=0.251 Sum_probs=18.5
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 043311 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQG 138 (257)
Q Consensus 101 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 138 (257)
=+.+...+++.++... + ...+..++++....|-.
T Consensus 323 ~~~e~l~~l~~~~~~~---~-~~~r~~~~Dal~~~GT~ 356 (574)
T smart00638 323 LSEEQLEQLWRQLYEK---K-KKARRIFLDAVAQAGTP 356 (574)
T ss_pred CCHHHHHHHHHHHHhC---C-HHHHHHHHHHHHhcCCH
Confidence 3445555555555431 1 45666666666666643
No 412
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=35.01 E-value=70 Score=22.47 Aligned_cols=33 Identities=24% Similarity=0.429 Sum_probs=19.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 043311 94 FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTA 127 (257)
Q Consensus 94 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 127 (257)
++++. .|+...|.++++.++..|+.|-...|..
T Consensus 5 ~Da~L-~G~~~ra~riL~~L~~Eg~ep~~lLw~L 37 (125)
T PF14840_consen 5 IDALL-AGDAKRALRILQGLQAEGVEPPILLWAL 37 (125)
T ss_dssp HHHHH-TT-HHHHHHHHHHHHHTT--HHHHHHHH
T ss_pred HHHHH-CCCHHHHHHHHHHHHHCCccHHHHHHHH
Confidence 34433 5667777777777777777776666543
No 413
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=34.84 E-value=1.7e+02 Score=25.21 Aligned_cols=136 Identities=14% Similarity=0.122 Sum_probs=66.0
Q ss_pred HHHHHHHhCCCCCCHHH---HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHH
Q 043311 108 QLFAQIKDKGHMPDVVA---HTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKY 184 (257)
Q Consensus 108 ~~~~~m~~~g~~p~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~ 184 (257)
-+++.+.+.|+.|++.+ -.+++.++.-.+..++..+++... ..+...+...- ..-+.++...+.++.....
T Consensus 100 Gv~kaL~e~gl~p~~i~GtS~Gaivaa~~a~~~~~e~~~~l~~~-----~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 173 (391)
T cd07229 100 GVVKALWLRGLLPRIITGTATGALIAALVGVHTDEELLRFLDGD-----GIDLSAFNRLR-GKKSLGYSGYGWLGTLGRR 173 (391)
T ss_pred HHHHHHHHcCCCCceEEEecHHHHHHHHHHcCCHHHHHHHHhcc-----chhhhhhhhhc-cccccccccccccchHHHH
Confidence 35666777888888653 555666666666556665555431 01111111100 0000001001112222333
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----------------HHCCCCCCHHHHHHHHHHhhcCCch
Q 043311 185 LMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM----------------KAKGFVPDEKAVKEALIDKRGQGFR 248 (257)
Q Consensus 185 ~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m----------------~~~g~~p~~~t~~~ll~~~~~~g~~ 248 (257)
+..+...|.-.|...+.-.++.+...-.+++|.+-=.+. .+.--.||...++++..+|+.-|-.
T Consensus 174 l~r~l~~G~l~D~~~l~~~lr~~lgd~TFeEAy~rTgriLnItv~~~~~~~~p~LLNylTaPnVlIwsAv~aS~a~p~~~ 253 (391)
T cd07229 174 IQRLLREGYFLDVKVLEEFVRANLGDLTFEEAYARTGRVLNITVAPSAVSGSPNLLNYLTAPNVLIWSAALASNASSAAL 253 (391)
T ss_pred HHHHHcCCCcccHHHHHHHHHHHcCCCcHHHHHHhhCCEEEEEEECCCCCCCCeeeecCCCCCchHHHHHHHHcCCcccc
Confidence 444444555566666666666555555555554322111 1111258888888888887766544
Q ss_pred h
Q 043311 249 G 249 (257)
Q Consensus 249 ~ 249 (257)
.
T Consensus 254 ~ 254 (391)
T cd07229 254 Y 254 (391)
T ss_pred C
Confidence 3
No 414
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=34.56 E-value=2.1e+02 Score=21.87 Aligned_cols=49 Identities=12% Similarity=0.091 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhCCCCC--CHHHH-----HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 043311 178 LGDAQKYLMEMVGKGMRP--NAGTY-----TAVFEAFVRAQKVDEARGLLQQMKAK 226 (257)
Q Consensus 178 ~~~a~~~~~~m~~~g~~p--~~~~~-----~~li~~~~~~~~~~~a~~~~~~m~~~ 226 (257)
++.|..+|+.+++.--.| -.... ...+-.|.+.|.+++|.+++++....
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d 140 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD 140 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC
Confidence 688888888887643333 11222 33456688999999999999998763
No 415
>PRK09857 putative transposase; Provisional
Probab=34.42 E-value=2.6e+02 Score=22.94 Aligned_cols=66 Identities=9% Similarity=0.080 Sum_probs=41.1
Q ss_pred HHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 043311 160 YAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231 (257)
Q Consensus 160 ~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 231 (257)
+..++.-....++ .++..++++.+.+. ++.......++.+-+-..|.-+++.++..+|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~-----~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGD-----AVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccc-----cchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 4455554445333 44556666666544 333344455566666666777788889999999998765
No 416
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.36 E-value=3.2e+02 Score=23.98 Aligned_cols=70 Identities=13% Similarity=0.216 Sum_probs=49.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~ 169 (257)
++..|.+...+. ++..+...|+..+..+++-.|..+...+..+.++++|+-+.-.|.+ ..|...+-.+..
T Consensus 292 VL~~llre~lPk----l~~~l~~~~~~~~l~t~~wfLt~f~d~lP~~t~LrIwD~~f~eGsk---vlfr~Alai~k~ 361 (436)
T KOG2058|consen 292 VLRELLREKLPK----LSLHLEGNGVDASLETLPWFLTLFVDILPSETVLRIWDCLFYEGSK---VLFRVALAILKK 361 (436)
T ss_pred HHHHHHHHHCHH----HHHhhhhcCCCeeeeehhhhHHHhcccccHHHHHHHHHHHHhcccH---HHHHHHHHHHHH
Confidence 566666554433 3355666777788899999999999999999999999999987744 444444444433
No 417
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=33.75 E-value=2.8e+02 Score=23.05 Aligned_cols=118 Identities=8% Similarity=0.032 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHhCCCCCcHHH----HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCChHHHHH
Q 043311 71 PRNLQEIFHKMRTEGLTNNAVK----MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS---AGQGKEALR 143 (257)
Q Consensus 71 ~~~a~~~~~~m~~~~~~p~~~~----ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~---~~~~~~a~~ 143 (257)
.+.-+.++++..+. .|+... .|..+.+..+.+...+-|+.+.... .-+...|-..|..... ...++....
T Consensus 47 ~E~klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~ 123 (321)
T PF08424_consen 47 AERKLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRD 123 (321)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHH
Confidence 44567778887776 455544 4566666677788888888888752 2267788888877655 234667777
Q ss_pred HHHHHHHC------CC--------CCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCC
Q 043311 144 VFMRMLAS------GV--------APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193 (257)
Q Consensus 144 ~~~~m~~~------g~--------~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~ 193 (257)
+|.+..+. |. .......-++++.|.-..+ +|..+.|..+++.+.+..+
T Consensus 124 ~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~--aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 124 VYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQ--AGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHH--CCchHHHHHHHHHHHHHHc
Confidence 77654432 11 1122333344444444444 7889999999998887544
No 418
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=33.40 E-value=3.3e+02 Score=23.81 Aligned_cols=120 Identities=12% Similarity=0.047 Sum_probs=75.5
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHHH------HH----------HHHHhcCChHHHHHHHHHHHhC---CCCCCHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAVK------MF----------DALSKDGLTHEALQLFAQIKDK---GHMPDVV 123 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~------ll----------~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~ 123 (257)
..+--..+.+.+...|++-+.. .|+... .. .-..+.|++..|.+.|.+-..- .+.|+..
T Consensus 211 ~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nak 288 (486)
T KOG0550|consen 211 LCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAK 288 (486)
T ss_pred cccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHH
Confidence 5556677888888888877764 344321 11 1235788999999999887653 4556667
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHh
Q 043311 124 AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190 (257)
Q Consensus 124 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~ 190 (257)
.|-..-.+..+.|+..+|..-=++-.+- . +......+.++-|.. . -+.|+.|.+-|+...+
T Consensus 289 lY~nra~v~~rLgrl~eaisdc~~Al~i--D-~syikall~ra~c~l-~--le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 289 LYGNRALVNIRLGRLREAISDCNEALKI--D-SSYIKALLRRANCHL-A--LEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHhHhhhcccCCchhhhhhhhhhhhc--C-HHHHHHHHHHHHHHH-H--HHHHHHHHHHHHHHHh
Confidence 7777777788889998888776665432 1 223333344433321 1 2458888887776543
No 419
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=33.28 E-value=1.1e+02 Score=18.37 Aligned_cols=47 Identities=17% Similarity=0.172 Sum_probs=20.5
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-----hcCChHHHHHH
Q 043311 98 SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA-----SAGQGKEALRV 144 (257)
Q Consensus 98 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~-----~~~~~~~a~~~ 144 (257)
...|++-+|-+++++.=.....+....|..+|.... +.|+...|..+
T Consensus 10 ~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHh
Confidence 345555555555555432222224444555554432 23445444443
No 420
>cd08318 Death_NMPP84 Death domain of Nuclear Matrix Protein P84. Death domain (DD) found in the Nuclear Matrix Protein P84 (also known as HPR1 or THOC1). HPR1/p84 resides in the nuclear matrix and is part of the THO complex, also called TREX (transcription/export) complex, which functions in mRNP biogenesis at the interface between transcription and export of mRNA from the nucleus. Mice lacking THOC1 have abnormal testis development and are sterile. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=32.94 E-value=85 Score=20.30 Aligned_cols=40 Identities=15% Similarity=0.244 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHC-CCCCCHHHHHHHHHHhhcCCchhhHHhhh
Q 043311 213 VDEARGLLQQMKAK-GFVPDEKAVKEALIDKRGQGFRGVINILF 255 (257)
Q Consensus 213 ~~~a~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~g~~~~~~~l~ 255 (257)
.+.+..++..-.++ | ...|...|+.++...|..+.|+++|
T Consensus 46 ~eq~~~mL~~W~~r~g---~~AT~~~L~~aL~~~~~~diae~l~ 86 (86)
T cd08318 46 KMQAKQLLVAWQDREG---SQATPETLITALNAAGLNEIAESLT 86 (86)
T ss_pred HHHHHHHHHHHHHhcC---ccccHHHHHHHHHHcCcHHHHHhhC
Confidence 45555555555554 3 2346777777777777777777665
No 421
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=32.43 E-value=2.1e+02 Score=21.30 Aligned_cols=135 Identities=13% Similarity=0.157 Sum_probs=87.3
Q ss_pred HHHHHHHHHhCCCCCcHH---HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043311 74 LQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150 (257)
Q Consensus 74 a~~~~~~m~~~~~~p~~~---~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 150 (257)
..+..+-+.+.++.|... -+++.+.+.|.... +..+.+.++-+|.......+-.+... ...+.++=-+|.+
T Consensus 13 llEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~~--~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 13 LLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGNQ--YPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHcc--ChHHHHHHHHHHH
Confidence 345556666778877754 38999999987544 55666777778877776666544443 3445555555553
Q ss_pred CCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 043311 151 SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227 (257)
Q Consensus 151 ~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 227 (257)
. =...+..+++.+.. .|++-+|..+....... +......++++..+.++...-..+|+...+++
T Consensus 87 R----L~~~~~~iievLL~-----~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 87 R----LGTAYEEIIEVLLS-----KGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred H----hhhhHHHHHHHHHh-----CCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 2 01145566666667 55588898888775332 33344667888888888887777877777654
No 422
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=32.29 E-value=1.8e+02 Score=20.37 Aligned_cols=42 Identities=17% Similarity=0.199 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHH
Q 043311 180 DAQKYLMEMVGKGMRPNA-GTYTAVFEAFVRAQKVDEARGLLQ 221 (257)
Q Consensus 180 ~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~~~~~~a~~~~~ 221 (257)
.+.++|+.|...|+--.. ..|...-..+...|++.+|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444444444444333322 224444444444444444444443
No 423
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=32.28 E-value=3.7e+02 Score=25.15 Aligned_cols=89 Identities=13% Similarity=0.121 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHH----
Q 043311 124 AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGT---- 199 (257)
Q Consensus 124 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~---- 199 (257)
+...+-.-+.+...+..|-++|..|-.. ..+++.-.. .++|.+|..+-+...+ +.||+..
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve-----~~~W~eAFalAe~hPe--~~~dVy~pyaq 812 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVE-----TQRWDEAFALAEKHPE--FKDDVYMPYAQ 812 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheee-----cccchHhHhhhhhCcc--ccccccchHHH
Confidence 3333333344455566777777776432 223444444 4558888887766554 2444432
Q ss_pred -------HHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 043311 200 -------YTAVFEAFVRAQKVDEARGLLQQMKAKGF 228 (257)
Q Consensus 200 -------~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 228 (257)
|.-.-.+|.++|+-.+|..+++++.+..+
T Consensus 813 wLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnnav 848 (1081)
T KOG1538|consen 813 WLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAV 848 (1081)
T ss_pred HhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhhh
Confidence 44455778899999999999999876543
No 424
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=31.97 E-value=20 Score=21.09 Aligned_cols=32 Identities=22% Similarity=0.408 Sum_probs=19.2
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043311 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132 (257)
Q Consensus 101 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 132 (257)
|--++...+|+.|..+...|.+..||-.|.=|
T Consensus 6 gy~~~lI~vFK~~pSr~YD~~Tr~W~F~L~Dy 37 (55)
T PF07443_consen 6 GYHEELIAVFKQMPSRNYDPKTRKWNFSLEDY 37 (55)
T ss_pred cCCHHHHHHHHcCcccccCccceeeeeeHHHH
Confidence 34455666777776666666666666555443
No 425
>PHA02917 ankyrin-like protein; Provisional
Probab=31.91 E-value=4.3e+02 Score=24.69 Aligned_cols=81 Identities=2% Similarity=-0.019 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCcHH-----HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 043311 69 TDPRNLQEIFHKMRTEGLTNNAV-----KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALR 143 (257)
Q Consensus 69 ~~~~~a~~~~~~m~~~~~~p~~~-----~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 143 (257)
|..+.+.-+ .+.|..++.. |-+..++..|+.+-..++.+.+.+.+-..+....+.+....++.|+.+-
T Consensus 46 ~~~~~v~~L----l~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~~~~a~~~~~~e~--- 118 (661)
T PHA02917 46 NNVEVVKLL----LDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIFSYMKSKNVDVDL--- 118 (661)
T ss_pred CcHHHHHHH----HHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchHHHHHhhcCCHHH---
Confidence 444444444 3445544432 3444455556655444455555443211122222333444455555533
Q ss_pred HHHHHHHCCCCCCH
Q 043311 144 VFMRMLASGVAPNA 157 (257)
Q Consensus 144 ~~~~m~~~g~~~~~ 157 (257)
.+-+.+.|..+|.
T Consensus 119 -vk~Ll~~Gadin~ 131 (661)
T PHA02917 119 -IKVLVEHGFDLSV 131 (661)
T ss_pred -HHHHHHcCCCCCc
Confidence 3444566766665
No 426
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=31.84 E-value=87 Score=22.67 Aligned_cols=37 Identities=19% Similarity=0.348 Sum_probs=21.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043311 204 FEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240 (257)
Q Consensus 204 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 240 (257)
|......+.+..+.++++.+.+.|+..+..|.+..|.
T Consensus 7 i~~Li~~~~i~tqeeL~~~L~~~G~~vsqaTIsRdL~ 43 (146)
T TIGR01529 7 IKEIITEEKISTQEELVALLKAEGIEVTQATVSRDLR 43 (146)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 4444455555566666666666666666666655554
No 427
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=31.83 E-value=1.6e+02 Score=19.75 Aligned_cols=59 Identities=10% Similarity=0.081 Sum_probs=36.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHCC
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG--QGKEALRVFMRMLASG 152 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~g 152 (257)
.++..|...+++++|..-+.++.... -.......+|..+...+ .-+.+-.++..+.+.|
T Consensus 7 ~~l~ey~~~~D~~ea~~~l~~L~~~~--~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~ 67 (113)
T smart00544 7 LIIEEYLSSGDTDEAVHCLLELKLPE--QHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQAN 67 (113)
T ss_pred HHHHHHHHcCCHHHHHHHHHHhCCCc--chHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcC
Confidence 46778888899999988888876432 22334444555555443 3344555666666554
No 428
>PRK10304 ferritin; Provisional
Probab=31.59 E-value=2.2e+02 Score=21.12 Aligned_cols=16 Identities=31% Similarity=0.719 Sum_probs=7.9
Q ss_pred HHHHHHHHHHhCCCCC
Q 043311 105 EALQLFAQIKDKGHMP 120 (257)
Q Consensus 105 ~a~~~~~~m~~~g~~p 120 (257)
.|.++++.+...|-.|
T Consensus 53 HA~kl~~~i~~rgg~~ 68 (165)
T PRK10304 53 HMQRLFDYLTDTGNLP 68 (165)
T ss_pred HHHHHHHHHHHcCCCe
Confidence 3555555555554443
No 429
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=31.42 E-value=1.9e+02 Score=20.32 Aligned_cols=57 Identities=12% Similarity=0.007 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC
Q 043311 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 105 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~ 172 (257)
.|..+++.+...|..|+ .-...+....++|+...+.-..-.+..|+.++..+.+.|+
T Consensus 49 HA~~~~~~l~~l~g~~~-----------~~~~~~~~~~~~l~~~~~~E~~e~~~~y~~~~~~A~~e~d 105 (134)
T cd01041 49 HAKGHFKLLKGLGGGDT-----------GPPIGIGDTLENLKAAIAGETYEYTEMYPEFAEVAEEEGF 105 (134)
T ss_pred HHHHHHHHHhcCCCCCc-----------CCCCCcchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCC
Confidence 46666666666666555 1122334455555555543211234667777777776555
No 430
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=31.33 E-value=1.1e+02 Score=17.74 Aligned_cols=34 Identities=12% Similarity=0.175 Sum_probs=19.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043311 205 EAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240 (257)
Q Consensus 205 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 240 (257)
-++.+.|++++|.+..+.+.+ +.|+-.-...|-.
T Consensus 9 ig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 9 IGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHHH
Confidence 456677777777777777766 4565554444433
No 431
>PF14162 YozD: YozD-like protein
Probab=31.10 E-value=1.1e+02 Score=17.64 Aligned_cols=17 Identities=29% Similarity=0.559 Sum_probs=8.0
Q ss_pred HHHHHHHHHhCCCCCCH
Q 043311 181 AQKYLMEMVGKGMRPNA 197 (257)
Q Consensus 181 a~~~~~~m~~~g~~p~~ 197 (257)
|.-+|.++.++|+.|+.
T Consensus 14 AefFy~eL~kRGyvP~e 30 (57)
T PF14162_consen 14 AEFFYHELVKRGYVPTE 30 (57)
T ss_pred HHHHHHHHHHccCCCcH
Confidence 34444445555555543
No 432
>KOG2536 consensus MAM33, mitochondrial matrix glycoprotein [Energy production and conversion]
Probab=31.00 E-value=1.7e+02 Score=23.46 Aligned_cols=36 Identities=17% Similarity=0.305 Sum_probs=23.1
Q ss_pred HHHHhCCCCCcHHHHHHHHHhcCChHHHHHHHHHHH
Q 043311 79 HKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIK 114 (257)
Q Consensus 79 ~~m~~~~~~p~~~~ll~~~~~~~~~~~a~~~~~~m~ 114 (257)
.-+..+|+.++...+|..|...++-.+-+..++.++
T Consensus 223 ~fLEeRGI~esl~~FL~~ym~~Kd~rEYl~WlksvK 258 (263)
T KOG2536|consen 223 RFLEERGIKESLASFLHAYMKNKDSREYLRWLKSVK 258 (263)
T ss_pred HHHHHcCCCHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 344457777777777777777776666555555554
No 433
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=30.98 E-value=3.6e+02 Score=23.49 Aligned_cols=50 Identities=12% Similarity=0.033 Sum_probs=31.4
Q ss_pred cCCCCHHHHHHHHHHHHh-CCCCCcHH-HHHHHHHhcCChHHHHHHHHHHHh
Q 043311 66 EEPTDPRNLQEIFHKMRT-EGLTNNAV-KMFDALSKDGLTHEALQLFAQIKD 115 (257)
Q Consensus 66 ~~~~~~~~a~~~~~~m~~-~~~~p~~~-~ll~~~~~~~~~~~a~~~~~~m~~ 115 (257)
.+.|+.+.|...-++.-. ....|... .++...+..|+|+.|+++.+.-++
T Consensus 165 qr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 165 QRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred HhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 356666666666555444 22333333 477788888888888887776554
No 434
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.75 E-value=4.4e+02 Score=24.43 Aligned_cols=85 Identities=11% Similarity=0.158 Sum_probs=50.7
Q ss_pred HHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCC-------------CCCHHHHHHHH
Q 043311 139 KEALRVFMRM-LASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM-------------RPNAGTYTAVF 204 (257)
Q Consensus 139 ~~a~~~~~~m-~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~-------------~p~~~~~~~li 204 (257)
++..+.+... .+.|+..+......+++.. .|.+..+..++++....|- .++......++
T Consensus 186 eei~~~L~~i~~~egi~ie~~AL~~La~~s-------~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~Ll 258 (618)
T PRK14951 186 ETVLEHLTQVLAAENVPAEPQALRLLARAA-------RGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLI 258 (618)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-------CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHH
Confidence 4444444443 3557777777766666633 2337777777665443221 12333344455
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 043311 205 EAFVRAQKVDEARGLLQQMKAKGFVPD 231 (257)
Q Consensus 205 ~~~~~~~~~~~a~~~~~~m~~~g~~p~ 231 (257)
++... |+...+.+++++|...|..|.
T Consensus 259 daL~~-~d~~~al~~l~~l~~~G~~~~ 284 (618)
T PRK14951 259 DALAQ-GDGRTVVETADELRLNGLSAA 284 (618)
T ss_pred HHHHc-CCHHHHHHHHHHHHHcCCCHH
Confidence 55444 788899999999998887765
No 435
>PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F.
Probab=30.73 E-value=55 Score=22.97 Aligned_cols=29 Identities=38% Similarity=0.607 Sum_probs=22.7
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 043311 134 SAGQGKEALRVFMRMLASGVAPNAYTYAV 162 (257)
Q Consensus 134 ~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ 162 (257)
-.|+.+.|..+++.+..+|+.|....|..
T Consensus 9 L~G~~~ra~riL~~L~~Eg~ep~~lLw~L 37 (125)
T PF14840_consen 9 LAGDAKRALRILQGLQAEGVEPPILLWAL 37 (125)
T ss_dssp HTT-HHHHHHHHHHHHHTT--HHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHCCccHHHHHHHH
Confidence 36889999999999999999998887764
No 436
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=30.33 E-value=1.9e+02 Score=20.00 Aligned_cols=84 Identities=20% Similarity=0.256 Sum_probs=55.6
Q ss_pred HHHHHHHC-CCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCC------------------CCCHHHHHHHH
Q 043311 144 VFMRMLAS-GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM------------------RPNAGTYTAVF 204 (257)
Q Consensus 144 ~~~~m~~~-g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~------------------~p~~~~~~~li 204 (257)
.|..+... +-.|...|..-+-..++. . -..+..++..|.+.|. .+....+...+
T Consensus 5 ~y~~L~~~~~~~~~~vtl~elA~~l~c-----S--~Rn~r~lLkkm~~~gWi~W~pg~GRG~~S~L~~l~~~~~~~~~~~ 77 (115)
T PF12793_consen 5 QYQRLWQHYGGQPVEVTLDELAELLFC-----S--RRNARTLLKKMQEEGWITWQPGRGRGNRSQLTFLKSPEELLEQQA 77 (115)
T ss_pred HHHHHHHHcCCCCcceeHHHHHHHhCC-----C--HHHHHHHHHHHHHCCCeeeeCCCCCCCCCeeEEeeCHHHHHHHHH
Confidence 34444433 334556677777666644 1 5678889999998774 33345667788
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 043311 205 EAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDK 242 (257)
Q Consensus 205 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 242 (257)
..+...|+++.|.++++. +...+..++..+
T Consensus 78 ~~~l~~g~~~~a~~ll~~--------~~~~~~~lL~~~ 107 (115)
T PF12793_consen 78 EELLEQGKYEQALQLLDF--------DQRQLAQLLQQT 107 (115)
T ss_pred HHHHHcCCHHHHHHHHHh--------CHHHHHHHHHHH
Confidence 889999999999999873 334555555544
No 437
>smart00005 DEATH DEATH domain, found in proteins involved in cell death (apoptosis). Alpha-helical domain present in a variety of proteins with apoptotic functions. Some (but not all) of these domains form homotypic and heterotypic dimers.
Probab=30.23 E-value=1.5e+02 Score=18.82 Aligned_cols=59 Identities=14% Similarity=0.214 Sum_probs=35.5
Q ss_pred hCCCCCcHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 043311 83 TEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALR 143 (257)
Q Consensus 83 ~~~~~p~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 143 (257)
+.|+..+...-+......+..+.+..++....... +...+...|+.++.+.|..+-|..
T Consensus 26 ~Lg~~~~~i~~i~~~~~~~~~~~~~~lL~~W~~~~--g~~at~~~L~~aL~~~~~~d~a~~ 84 (88)
T smart00005 26 KLGLSEADIDQIRTEAPRDLAEQSVQLLRLWEQRE--GKNATLGTLLEALRKMGRDDAVEL 84 (88)
T ss_pred HcCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHcc--chhhHHHHHHHHHHHcChHHHHHH
Confidence 34554443334444443344567777777776642 334678888888888887765543
No 438
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=30.10 E-value=4.1e+02 Score=23.86 Aligned_cols=86 Identities=17% Similarity=0.208 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCC------------HHHHHHHH
Q 043311 138 GKEALRVFMRML-ASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN------------AGTYTAVF 204 (257)
Q Consensus 138 ~~~a~~~~~~m~-~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~------------~~~~~~li 204 (257)
.++..+++.... +.|+..+......++... .|.+..+...++.+...+-..+ ...+-.++
T Consensus 177 ~~el~~~L~~i~~~egi~i~~~Al~~ia~~s-------~GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~~~~if~Li 249 (504)
T PRK14963 177 EEEIAGKLRRLLEAEGREAEPEALQLVARLA-------DGAMRDAESLLERLLALGTPVTRKQVEEALGLPPQERLRGIA 249 (504)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-------CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCcHHHHHHHH
Confidence 455556665544 567777777766666543 2337777777776554331112 22233355
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 043311 205 EAFVRAQKVDEARGLLQQMKAKGFVPD 231 (257)
Q Consensus 205 ~~~~~~~~~~~a~~~~~~m~~~g~~p~ 231 (257)
+++ ..++.+.|..+++++...|..|.
T Consensus 250 ~al-~~~d~~~Al~~l~~Ll~~G~~~~ 275 (504)
T PRK14963 250 AAL-AQGDAAEALSGAAQLYRDGFAAR 275 (504)
T ss_pred HHH-HcCCHHHHHHHHHHHHHcCCCHH
Confidence 555 56899999999999999997655
No 439
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=30.09 E-value=3.4e+02 Score=22.98 Aligned_cols=64 Identities=11% Similarity=0.119 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 043311 178 LGDAQKYLMEMVGKGMRPNAG----TYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKR 243 (257)
Q Consensus 178 ~~~a~~~~~~m~~~g~~p~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 243 (257)
-++++.+++++... .|+.. -|-++.......|.+++++.+|++....|-+|=...-..++...-
T Consensus 119 ~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 119 KEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 56777777766654 34543 477788888888999999999999999999987777666666544
No 440
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=30.02 E-value=42 Score=27.19 Aligned_cols=31 Identities=23% Similarity=0.266 Sum_probs=14.0
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043311 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169 (257)
Q Consensus 137 ~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~ 169 (257)
+++.-+.+++..++. .|+..|=+.+|-+++.
T Consensus 195 ~Y~~SL~~L~~~k~~--~P~i~TKSgiMlGLGE 225 (306)
T COG0320 195 TYERSLSLLERAKEL--GPDIPTKSGLMVGLGE 225 (306)
T ss_pred cHHHHHHHHHHHHHh--CCCcccccceeeecCC
Confidence 344444444444432 3444444444444443
No 441
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=29.78 E-value=2.3e+02 Score=25.52 Aligned_cols=21 Identities=14% Similarity=0.268 Sum_probs=10.8
Q ss_pred HHHHHHhcCChHHHHHHHHHH
Q 043311 93 MFDALSKDGLTHEALQLFAQI 113 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m 113 (257)
++.-|.+.+.+++|..++..|
T Consensus 414 L~~~yl~~~qi~eAi~lL~sm 434 (545)
T PF11768_consen 414 LISQYLRCDQIEEAINLLLSM 434 (545)
T ss_pred HHHHHHhcCCHHHHHHHHHhC
Confidence 444555555555555555444
No 442
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=29.69 E-value=89 Score=16.11 Aligned_cols=13 Identities=15% Similarity=0.227 Sum_probs=5.9
Q ss_pred hHHHHHHHHHHHH
Q 043311 138 GKEALRVFMRMLA 150 (257)
Q Consensus 138 ~~~a~~~~~~m~~ 150 (257)
++.|..+|+....
T Consensus 3 ~dRAR~IyeR~v~ 15 (32)
T PF02184_consen 3 FDRARSIYERFVL 15 (32)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 443
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=29.53 E-value=1.5e+02 Score=18.81 Aligned_cols=18 Identities=28% Similarity=0.470 Sum_probs=7.8
Q ss_pred CHHHHHHHHHHHHHCCCC
Q 043311 212 KVDEARGLLQQMKAKGFV 229 (257)
Q Consensus 212 ~~~~a~~~~~~m~~~g~~ 229 (257)
+++++...+.++...|+.
T Consensus 19 ~~~~~~~~~~~l~~~G~s 36 (89)
T PF08542_consen 19 DFKEARKKLYELLVEGYS 36 (89)
T ss_dssp CHHHHHHHHHHHHHTT--
T ss_pred CHHHHHHHHHHHHHcCCC
Confidence 444444444444444443
No 444
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=28.53 E-value=3.5e+02 Score=22.58 Aligned_cols=86 Identities=14% Similarity=0.054 Sum_probs=48.7
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhccC------CcchhHHH
Q 043311 109 LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGV--APNAYTYAVLIKGLAAAAD------GNAKILGD 180 (257)
Q Consensus 109 ~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~~~~~t~~~ll~~~~~~~~------~~~~~~~~ 180 (257)
+-....+.|++.+....+.++..+. |+.-.+.+-++.+.-... ..+......++.-...... --.|..+.
T Consensus 149 i~~~~~~~~l~i~~~a~~~L~~~~~--~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~v~~~~~~~~f~l~dail~g~~~~ 226 (334)
T COG1466 149 IKKRAKELGLKIDQEAIQLLLEALG--GNLLAIAQEIEKLALYAGDKEITLEDVEEVVSDVAEFNIFDLADALLKGDVKK 226 (334)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHhC--CcHHHHHHHHHHHHHhCCCCcCCHHHHHHHHhccccCCHHHHHHHHHCCCHHH
Confidence 4455667777788877777777666 666666666666553211 2333222222221111000 00356899
Q ss_pred HHHHHHHHHhCCCCCC
Q 043311 181 AQKYLMEMVGKGMRPN 196 (257)
Q Consensus 181 a~~~~~~m~~~g~~p~ 196 (257)
|..+++.+...|.+|=
T Consensus 227 a~~~l~~L~~~ge~p~ 242 (334)
T COG1466 227 ALRLLRDLLLEGEEPL 242 (334)
T ss_pred HHHHHHHHHHcCCcHH
Confidence 9999999998887653
No 445
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=28.51 E-value=5.2e+02 Score=24.54 Aligned_cols=67 Identities=18% Similarity=0.208 Sum_probs=48.3
Q ss_pred HHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCC
Q 043311 128 VIEAYAS---AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194 (257)
Q Consensus 128 li~~~~~---~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~ 194 (257)
.|+++.+ .+|.+.|+.++..|.+.|..|....-..++-+....|..+......+...++....-|++
T Consensus 261 ~Isa~~ksirgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdigladp~al~~~~~~~~a~~~~g~p 330 (725)
T PRK13341 261 TISAFIKSLRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGLADPQALVVVEACAAAFERVGLP 330 (725)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhCCc
Confidence 4555544 578999999999999999888777666666666565554455566777777777766653
No 446
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=28.39 E-value=1.4e+02 Score=23.72 Aligned_cols=52 Identities=17% Similarity=0.112 Sum_probs=37.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHhhcCCchhhHHh
Q 043311 202 AVFEAFVRAQKVDEARGLLQQMKA----KG-FVPDEKAVKEALIDKRGQGFRGVINI 253 (257)
Q Consensus 202 ~li~~~~~~~~~~~a~~~~~~m~~----~g-~~p~~~t~~~ll~~~~~~g~~~~~~~ 253 (257)
-+-.-|.+.|++++|.++|+.+.. .| ..+...+...+..++...|+.+....
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~ 239 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLT 239 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 345678888999999999998852 23 35666777777777888888776544
No 447
>PF03444 HrcA_DNA-bdg: Winged helix-turn-helix transcription repressor, HrcA DNA-binding; InterPro: IPR005104 Prokaryotic cells have a defence mechanism against a sudden heat-shock stress. Commonly, they induce a set of proteins that protect cellular proteins from being denatured by heat. Among such proteins are the GroE and DnaK chaperones whose transcription is regulated by a heat-shock repressor protein HrcA. HrcA is a winged helix-turn-helix repressor that negatively regulates the transcription of dnaK and groE operons by binding the upstream CIRCE (controlling inverted repeat of chaperone expression) element. In Bacillus subtilis this element is a perfect 9 base pair inverted repeat separated by a 9 base pair spacer. The crystal structure of a heat-inducible transcriptional repressor, HrcA, from Thermotoga maritima has been reported at 2.2A resolution. HrcA is composed of three domains: an N-terminal winged helix-turn-helix domain (WHTH), a GAF-like domain, and an inserted dimerizing domain (IDD). The IDD shows a unique structural fold with an anti-parallel beta-sheet composed of three beta-strands sided by four alpha-helices. HrcA crystallises as a dimer, which is formed through hydrophobic contact between the IDDs and a limited contact that involves conserved residues between the GAF-like domains []. The structural studies suggest that the inactive form of HrcA is the dimer and this is converted to its DNA-binding form by interaction with GroEL, which binds to a conserved C-terminal sequence region [, ]. Comparison of the HrcA-CIRCE complexes from B. subtilis and Bacillus thermoglucosidasius (Geobacillus thermoglucosidasius), which grow at vastly different ranges of temperature shows that the thermostability profiles were consistent with the difference in the growth temperatures suggesting that HrcA can function as a thermosensor to detect temperature changes in cells []. Any increase in temperature causes the dissociation of the HrcA from the CIRCE complex with the concomitant activation of transcription of the groE and dnaK operons. This domain represents the winged helix-turn-helix DNA-binding domain which is located close to the N terminus of HrcA. This domain is also found at the N terminus of a set of uncharacterised proteins that have two C-terminal CBS domains. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=28.05 E-value=1.7e+02 Score=18.73 Aligned_cols=47 Identities=9% Similarity=0.221 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchh
Q 043311 198 GTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRG 249 (257)
Q Consensus 198 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 249 (257)
....++|+.|.+.|..-....+-+++ ..++.|....+..+...|..+
T Consensus 8 ~IL~alV~~Y~~~~~PVgSk~ia~~l-----~~s~aTIRN~M~~Le~lGlve 54 (78)
T PF03444_consen 8 EILKALVELYIETGEPVGSKTIAEEL-----GRSPATIRNEMADLEELGLVE 54 (78)
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHH-----CCChHHHHHHHHHHHHCCCcc
Confidence 34556666666666666666655542 234566666666666655544
No 448
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=28.00 E-value=7.6e+02 Score=27.07 Aligned_cols=148 Identities=11% Similarity=0.074 Sum_probs=83.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGH--MPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAA 170 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~ 170 (257)
+-.+-.+++.+.+|.-.|+.-..... .....-|-.+...|+.-+++++...+...-.. +...+.-++.. ..
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~~qil~~-e~- 1461 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLYQQILEH-EA- 1461 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHHHHHHHH-Hh-
Confidence 44466778888888888887311111 11234455566689999999888777764211 23334444433 33
Q ss_pred cCCcchhHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHhhcCCch
Q 043311 171 ADGNAKILGDAQKYLMEMVGKGMRPN-AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA-VKEALIDKRGQGFR 248 (257)
Q Consensus 171 ~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~ 248 (257)
.|+|..|...|+.+.+. .|+ ..+++=++..-...|.++.+.-..+-.... ..+.... ++.=+.+..+.++.
T Consensus 1462 ----~g~~~da~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qw 1534 (2382)
T KOG0890|consen 1462 ----SGNWADAAACYERLIQK--DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQW 1534 (2382)
T ss_pred ----hccHHHHHHHHHHhhcC--CCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcch
Confidence 45599999999999865 455 556665665555566666665544433322 1111111 22223344666666
Q ss_pred hhHHhh
Q 043311 249 GVINIL 254 (257)
Q Consensus 249 ~~~~~l 254 (257)
+..+.+
T Consensus 1535 D~~e~~ 1540 (2382)
T KOG0890|consen 1535 DLLESY 1540 (2382)
T ss_pred hhhhhh
Confidence 666554
No 449
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.79 E-value=1.7e+02 Score=18.86 Aligned_cols=33 Identities=18% Similarity=0.316 Sum_probs=23.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 043311 203 VFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVK 236 (257)
Q Consensus 203 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~ 236 (257)
+++-+.++.-.++|+++++.|.++| ..+...-+
T Consensus 37 V~D~L~rCdT~EEAlEii~yleKrG-Ei~~E~A~ 69 (98)
T COG4003 37 VIDFLRRCDTEEEALEIINYLEKRG-EITPEMAK 69 (98)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 4566677788888888888888887 34444333
No 450
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=27.72 E-value=1.9e+02 Score=19.21 Aligned_cols=68 Identities=16% Similarity=0.231 Sum_probs=42.3
Q ss_pred HhCCCCCcHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 043311 82 RTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG 152 (257)
Q Consensus 82 ~~~~~~p~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 152 (257)
.+.|+..+...-+..=...+ .+...+++....+.. ....|++.|+.++.+.|.-..|..+=+.+.+.|
T Consensus 27 R~LGLse~~I~~i~~~~~~~-~eq~~qmL~~W~~~~--G~~At~~~L~~aL~~~~~~~~Ae~I~~~l~~~~ 94 (96)
T cd08315 27 RQLGLSENEIDVAKANERVT-REQLYQMLLTWVNKT--GRKASVNTLLDALEAIGLRLAKESIQDELISSG 94 (96)
T ss_pred HHcCCCHHHHHHHHHHCCCC-HHHHHHHHHHHHHhh--CCCcHHHHHHHHHHHcccccHHHHHHHHHHHcC
Confidence 44555555443444333333 566667666665531 235678888888888888777777776666655
No 451
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=27.60 E-value=4.1e+02 Score=23.52 Aligned_cols=47 Identities=15% Similarity=0.102 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCcHHHHHHHHHhcCChHHHHHHHHHHHh
Q 043311 69 TDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKD 115 (257)
Q Consensus 69 ~~~~~a~~~~~~m~~~~~~p~~~~ll~~~~~~~~~~~a~~~~~~m~~ 115 (257)
+.+++-.++++.+.+.|-..-....|+.|.+.++++.|..-+++-.+
T Consensus 68 ~~~~e~i~lL~~l~~~g~ad~lp~TIDSyTR~n~y~~A~~~l~~s~~ 114 (480)
T TIGR01503 68 ALLDEHIELLRTLQEEGGADFLPSTIDAYTRQNRYDEAAVGIKESIK 114 (480)
T ss_pred CcHHHHHHHHHHHHHccCCCccceeeecccccccHHHHHHHHHhhhh
Confidence 45666666666666654222222356677777777777666665544
No 452
>KOG3303 consensus Predicted alpha-helical protein, potentially involved in replication/repair [Replication, recombination and repair]
Probab=27.55 E-value=2.8e+02 Score=21.06 Aligned_cols=66 Identities=8% Similarity=0.084 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHCC---C-CCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 043311 139 KEALRVFMRMLASG---V-APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211 (257)
Q Consensus 139 ~~a~~~~~~m~~~g---~-~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 211 (257)
+++.++..++.+.- + +.+..+...++.-+-. .......+.+.+...|..++...++.++..++...
T Consensus 5 ~kg~~Li~d~kr~~~~~Lppyn~d~ir~i~~E~~~-------l~~~~~~i~~~~~~g~~~d~~~~~~~~m~h~~~~R 74 (192)
T KOG3303|consen 5 EKGLQLILDLKRTPLGQLPPYNEDLIRQILEEIDA-------LDARNESIKQKAQSGGSDDNLLPVNYLMMHLSLER 74 (192)
T ss_pred HHHHHHHHHHhhCccccCCCccHHHHHHHHHHHHH-------HHHHHHHHHHHHhcCCCccchhHHHHHHHHHHHHH
Confidence 45667777776542 1 2355555555554433 13455566666666555555566677776665443
No 453
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.22 E-value=4.6e+02 Score=23.48 Aligned_cols=88 Identities=7% Similarity=0.010 Sum_probs=50.6
Q ss_pred HHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhC--C-C----------CCCHHHHHHHH
Q 043311 139 KEALRVFMRML-ASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK--G-M----------RPNAGTYTAVF 204 (257)
Q Consensus 139 ~~a~~~~~~m~-~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~--g-~----------~p~~~~~~~li 204 (257)
+...+.++... ..|+..+......+.+.. .|.+..|..+++..... | + ..+...+..++
T Consensus 183 ~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S-------~Gd~RdAL~lLeq~i~~~~~~it~~~V~~~lg~~~~~~~~~l~ 255 (484)
T PRK14956 183 SVLQDYSEKLCKIENVQYDQEGLFWIAKKG-------DGSVRDMLSFMEQAIVFTDSKLTGVKIRKMIGYHGIEFLTSFI 255 (484)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-------CChHHHHHHHHHHHHHhCCCCcCHHHHHHHhCCCCHHHHHHHH
Confidence 33444444443 356666666655555422 23366677666654321 1 1 12334455566
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 043311 205 EAFVRAQKVDEARGLLQQMKAKGFVPDEK 233 (257)
Q Consensus 205 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 233 (257)
.+....+....+..++++|.+.|..|...
T Consensus 256 ~si~~~d~~~~al~~l~~l~~~G~d~~~~ 284 (484)
T PRK14956 256 KSLIDPDNHSKSLEILESLYQEGQDIYKF 284 (484)
T ss_pred HHHHcCCcHHHHHHHHHHHHHcCCCHHHH
Confidence 66555555678999999999999877644
No 454
>PHA02989 ankyrin repeat protein; Provisional
Probab=27.13 E-value=2.9e+02 Score=24.43 Aligned_cols=17 Identities=6% Similarity=0.034 Sum_probs=10.0
Q ss_pred HHHHHHHHHhCCCCCCH
Q 043311 106 ALQLFAQIKDKGHMPDV 122 (257)
Q Consensus 106 a~~~~~~m~~~g~~p~~ 122 (257)
..++.+.+.++|..++.
T Consensus 87 ~~~iv~~Ll~~Gadin~ 103 (494)
T PHA02989 87 IKKIVKLLLKFGADINL 103 (494)
T ss_pred HHHHHHHHHHCCCCCCC
Confidence 34566666666665543
No 455
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=26.08 E-value=5e+02 Score=23.57 Aligned_cols=79 Identities=24% Similarity=0.282 Sum_probs=58.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHH
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAY--ASAGQGKEALRVFMRMLASGVAPN--AYTYAVLIKGLA 168 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~g~~~~--~~t~~~ll~~~~ 168 (257)
-++++.+.|+...|..++.++.. ..++.....-.+|.+- ....+...|.+.|.+..-..+.++ .+.|-..+.+..
T Consensus 69 Aa~al~~e~k~~qA~~Ll~ql~~-~Ltd~Q~~~~~LL~ael~la~~q~~~Al~~L~~~~~~~ls~~Qq~Ry~q~~a~a~e 147 (604)
T COG3107 69 AARALVEEGKTAQAQALLNQLPQ-ELTDAQRAEKSLLAAELALAQKQPAAALQQLAKLLPADLSQNQQARYYQARADALE 147 (604)
T ss_pred HHHHHHHcCChHHHHHHHHhccc-cCCHHHHHHHHHHHHHHHHhccChHHHHHHHhhcchhhcCHHHHHHHHHHHHHHHh
Confidence 46778888999999999998887 6777777777777764 335678888888888876666666 466777666666
Q ss_pred hccC
Q 043311 169 AAAD 172 (257)
Q Consensus 169 ~~~~ 172 (257)
..|+
T Consensus 148 a~~~ 151 (604)
T COG3107 148 ARGD 151 (604)
T ss_pred cccc
Confidence 5544
No 456
>COG5210 GTPase-activating protein [General function prediction only]
Probab=25.94 E-value=2.4e+02 Score=25.16 Aligned_cols=59 Identities=12% Similarity=0.041 Sum_probs=42.9
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043311 182 QKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240 (257)
Q Consensus 182 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 240 (257)
-+++..|...|+.+...++..++..+++.-.++.+.++++.+--.|+.---..+.+++.
T Consensus 362 p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~~~l~~~~~~~l~ 420 (496)
T COG5210 362 PELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSSMLFQLALAILK 420 (496)
T ss_pred HHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 35667777778888888888888888888888888888888877776655544444444
No 457
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=25.89 E-value=1.5e+02 Score=21.28 Aligned_cols=17 Identities=18% Similarity=0.253 Sum_probs=9.8
Q ss_pred hHHHHHHHHHHHHCCCC
Q 043311 138 GKEALRVFMRMLASGVA 154 (257)
Q Consensus 138 ~~~a~~~~~~m~~~g~~ 154 (257)
++-|..+++.+...|..
T Consensus 49 ~~HA~~l~~~i~~~gg~ 65 (156)
T cd01055 49 REHAMKFFDYLNDRGGR 65 (156)
T ss_pred HHHHHHHHHHHHHCCCC
Confidence 45566666666655533
No 458
>PF05664 DUF810: Protein of unknown function (DUF810); InterPro: IPR008528 This family consists of several plant proteins of unknown function.
Probab=25.88 E-value=5.6e+02 Score=24.08 Aligned_cols=84 Identities=15% Similarity=0.109 Sum_probs=57.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCC----hHHHHHHHHHHHHC----CCCCCH---HHHHHHHHHHHhccCCcchhHHHHHHHH
Q 043311 117 GHMPDVVAHTAVIEAYASAGQ----GKEALRVFMRMLAS----GVAPNA---YTYAVLIKGLAAAADGNAKILGDAQKYL 185 (257)
Q Consensus 117 g~~p~~~~~~~li~~~~~~~~----~~~a~~~~~~m~~~----g~~~~~---~t~~~ll~~~~~~~~~~~~~~~~a~~~~ 185 (257)
|++.|+..|..|+.++....+ ++++.++++-|++. ||.+.. -.-..+++-|+..|+ ...+..|...+
T Consensus 212 gyplN~~LYe~LL~~~FD~~de~~vidE~dEvlellK~tW~~LGIt~~lHn~cf~WVlF~qyv~tge--~~LL~~a~~~L 289 (677)
T PF05664_consen 212 GYPLNVRLYEKLLFSVFDILDEGQVIDEVDEVLELLKKTWSILGITQTLHNVCFAWVLFRQYVATGE--PDLLKAAIQQL 289 (677)
T ss_pred CCCccHHHHHHHHHHHhcccccchHHhhHHHHHHHHHHHhHHhCCCHHHHHHHHHHHHHHHHHhcCC--HHHHHHHHHHH
Confidence 778899999999999988654 46777777766643 666433 222357777888885 77788888888
Q ss_pred HHHHhCCC-CCCHHHHHH
Q 043311 186 MEMVGKGM-RPNAGTYTA 202 (257)
Q Consensus 186 ~~m~~~g~-~p~~~~~~~ 202 (257)
++.....- .+....|.-
T Consensus 290 ~ev~~d~~~~~~~~~y~~ 307 (677)
T PF05664_consen 290 QEVAKDAKRATKDPLYLK 307 (677)
T ss_pred HHHHHhccccccchhhhh
Confidence 88875322 334444443
No 459
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=25.82 E-value=6.1e+02 Score=24.51 Aligned_cols=44 Identities=20% Similarity=0.230 Sum_probs=26.0
Q ss_pred HHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043311 104 HEALQLFAQI-KDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRML 149 (257)
Q Consensus 104 ~~a~~~~~~m-~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 149 (257)
+...+.+.++ .+.|+..+......++... .|++..++.+++++.
T Consensus 182 ~~l~~~L~~il~~EGv~id~eal~lLa~~s--gGdlR~Al~eLEKLi 226 (824)
T PRK07764 182 EVMRGYLERICAQEGVPVEPGVLPLVIRAG--GGSVRDSLSVLDQLL 226 (824)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHH
Confidence 3334444433 3456766666666555544 367777887777766
No 460
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=25.39 E-value=2e+02 Score=18.86 Aligned_cols=50 Identities=18% Similarity=0.290 Sum_probs=27.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDK-GHMPDVVAHTAVIEAYASAGQGKEALRVF 145 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 145 (257)
+-.-|-+.|..+.+.+.+..+.+. |- ..|...|+.++..++.-.-|..++
T Consensus 38 I~~~y~r~gL~EqvyQ~L~~W~~~eg~---~Atv~~Lv~AL~~c~l~~lAe~l~ 88 (90)
T cd08780 38 LAYEYDREGLYEQAYQLLRRFIQSEGK---KATLQRLVQALEENGLTSLAEDLL 88 (90)
T ss_pred HHhhcccccHHHHHHHHHHHHHHhccc---cchHHHHHHHHHHccchHHHHHHh
Confidence 444555566666666666655542 32 255666666666666555555443
No 461
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=25.33 E-value=5.2e+02 Score=23.48 Aligned_cols=155 Identities=8% Similarity=0.069 Sum_probs=102.4
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCC-CcHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLT-NNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEA 141 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 141 (257)
..+..+..++-+.-+..+|...|-. -+..+++.+|... ..+.-..+|+.+.+..+ |.+....-+.-+...++.+.+
T Consensus 74 ~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~ReLa~~yEkik~sk~ 150 (711)
T COG1747 74 TIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGRELADKYEKIKKSKA 150 (711)
T ss_pred HHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHHHHHHHHHhchhhH
Confidence 5667777888888888888886533 3334688888877 55777888888777543 444444444444445777888
Q ss_pred HHHHHHHHHCCCCC-----CHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHcCCHHH
Q 043311 142 LRVFMRMLASGVAP-----NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV-GKGMRPNAGTYTAVFEAFVRAQKVDE 215 (257)
Q Consensus 142 ~~~~~~m~~~g~~~-----~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~-~~g~~p~~~~~~~li~~~~~~~~~~~ 215 (257)
-..|......=++. =...|.-+...... ..+....+...++ ..|...-.+.+.-+-.-|....++++
T Consensus 151 a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~d-------D~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~e 223 (711)
T COG1747 151 AEFFGKALYRFIPRRQNAAIKEVWEKLPELIGD-------DKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTE 223 (711)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHHhccc-------cHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHH
Confidence 88887776542221 11345555543222 2566666666666 34556666777778888888999999
Q ss_pred HHHHHHHHHHCC
Q 043311 216 ARGLLQQMKAKG 227 (257)
Q Consensus 216 a~~~~~~m~~~g 227 (257)
|.+++..+.+..
T Consensus 224 ai~Ilk~il~~d 235 (711)
T COG1747 224 AIRILKHILEHD 235 (711)
T ss_pred HHHHHHHHhhhc
Confidence 999999877653
No 462
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=25.28 E-value=2e+02 Score=20.18 Aligned_cols=45 Identities=13% Similarity=0.138 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043311 178 LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM 223 (257)
Q Consensus 178 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 223 (257)
+....++|+...+....-.+..|+.++..+.+.|+.. +..+|+.+
T Consensus 71 ~~~~~~~l~~~~~~E~~e~~~~y~~~~~~A~~e~d~~-~~~~f~~i 115 (134)
T cd01041 71 IGDTLENLKAAIAGETYEYTEMYPEFAEVAEEEGFKE-AARSFEAI 115 (134)
T ss_pred cchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHH
Confidence 3445555555443321113356666666666666533 33344433
No 463
>cd08789 CARD_IPS-1_RIG-I Caspase activation and recruitment domains (CARDs) found in IPS-1 and RIG-I-like RNA helicases. Caspase activation and recruitment domains (CARDs) found in IPS-1 (Interferon beta promoter stimulator protein 1) and Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. RIG-I-like helicases and IPS-1 play important roles in the induction of interferons in response to viral infection. They are crucial in triggering innate immunity and in developing adaptive immunity against viral pathogens. RIG-I-like helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. MDA5 and RIG-I associate with IPS-1 through a CARD-CAR
Probab=25.23 E-value=2e+02 Score=18.58 Aligned_cols=44 Identities=18% Similarity=0.194 Sum_probs=22.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEA 141 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 141 (257)
+.......|+.+.|..+++.+. + -..-|..++.++..+|.-..|
T Consensus 38 I~a~~~~~G~~~aa~~Ll~~L~-r----~~~Wf~~Fl~AL~~~~~~~LA 81 (84)
T cd08789 38 IQAAENNSGNIKAAWTLLDTLV-R----RDNWLEPFLDALRECGLGHLA 81 (84)
T ss_pred HHHHHhcCChHHHHHHHHHHHh-c----cCChHHHHHHHHHHcCCHHHH
Confidence 3334444555555666665555 2 123445555555555544443
No 464
>PF13877 RPAP3_C: Potential Monad-binding region of RPAP3
Probab=25.19 E-value=2e+02 Score=18.68 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=17.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043311 196 NAGTYTAVFEAFVRAQKVDEARGLLQQ 222 (257)
Q Consensus 196 ~~~~~~~li~~~~~~~~~~~a~~~~~~ 222 (257)
+....-.++.+..+.++++.+..++..
T Consensus 64 ~~~~i~~~L~~L~~~~RF~l~~~fl~~ 90 (94)
T PF13877_consen 64 DPEFIFEILEALSKVKRFDLAVMFLSS 90 (94)
T ss_pred CHHHHHHHHHHhcCCCCHHHHHHhcCH
Confidence 334555566777777777777766544
No 465
>cd00904 Ferritin Ferritin iron storage proteins. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Bacterial non-heme ferritins are composed only of H chains. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary rol
Probab=25.04 E-value=1e+02 Score=22.58 Aligned_cols=49 Identities=10% Similarity=0.009 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 043311 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246 (257)
Q Consensus 197 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 246 (257)
...++.+...+.+.+|+....-+-.++.+..+. ....+..++.-..+.|
T Consensus 99 ~~~i~~l~~~A~~~~D~~t~~fl~~~fi~eQ~e-e~~~~~~~l~~l~~~~ 147 (160)
T cd00904 99 NQALLDLHELASEEKDPHLCDFLESHFLDEQVK-EIKQVGDILTNLERLN 147 (160)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHhhchhhHHHHH-HHHHHHHHHHHHHhhc
Confidence 345666666666666654443333324443332 3344444444444443
No 466
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=25.02 E-value=3.7e+02 Score=21.66 Aligned_cols=162 Identities=13% Similarity=0.140 Sum_probs=100.7
Q ss_pred ccccc-ccccCCCCHHHHHHHHHHHHhC-CCCCcHH----HHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 043311 58 DPFKK-VVDEEPTDPRNLQEIFHKMRTE-GLTNNAV----KMFDALSKDGLTHEALQLFAQIKDK-GHMPDVVAHTAVIE 130 (257)
Q Consensus 58 ~~~~~-~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~----~ll~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~ 130 (257)
.-|.- ..-.+.|++++|.+.|+.+... ...|-.. .++.++.+.++.+.|....++..+. +..||+ -|-.-|.
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~Ylk 114 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLK 114 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHH
Confidence 33443 5566889999999999999973 3334332 3677888999999999999987664 445554 3444444
Q ss_pred HHHhc-------CChHHHHHHHHH---HHHC----CCCCCHHHHHH------------HHHHHHhccCCcchhHHHHHHH
Q 043311 131 AYASA-------GQGKEALRVFMR---MLAS----GVAPNAYTYAV------------LIKGLAAAADGNAKILGDAQKY 184 (257)
Q Consensus 131 ~~~~~-------~~~~~a~~~~~~---m~~~----g~~~~~~t~~~------------ll~~~~~~~~~~~~~~~~a~~~ 184 (257)
+++.- .|...+.+-|.. ..+. .-.||...-.. +-+-|.+. |.+..|..-
T Consensus 115 gLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr-----~~~~AA~nR 189 (254)
T COG4105 115 GLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKR-----GAYVAAINR 189 (254)
T ss_pred HHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-----cChHHHHHH
Confidence 44432 344444444444 4433 12333333222 22234453 448888888
Q ss_pred HHHHHhCCCCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 043311 185 LMEMVGKGMRPNAG---TYTAVFEAFVRAQKVDEARGLLQQMKAK 226 (257)
Q Consensus 185 ~~~m~~~g~~p~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~ 226 (257)
+++|.+. .+-+.. ..-.+..+|-..|..++|.+.-+-+...
T Consensus 190 ~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 190 FEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 8888875 332333 3555678899999999998887776543
No 467
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=24.83 E-value=2e+02 Score=18.64 Aligned_cols=53 Identities=23% Similarity=0.238 Sum_probs=26.5
Q ss_pred HhcCChHHHHH----HHHHHHhCCCCCC--HHHHH--HHHHHHHhcCChHHHHHHHHHHHH
Q 043311 98 SKDGLTHEALQ----LFAQIKDKGHMPD--VVAHT--AVIEAYASAGQGKEALRVFMRMLA 150 (257)
Q Consensus 98 ~~~~~~~~a~~----~~~~m~~~g~~p~--~~~~~--~li~~~~~~~~~~~a~~~~~~m~~ 150 (257)
.+.|++..|.+ .|+.....+.... ...+. .+-......|++++|...+++-.+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45666666643 3444333333221 11221 223345556777777777777653
No 468
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=24.74 E-value=1.2e+02 Score=25.47 Aligned_cols=24 Identities=8% Similarity=0.001 Sum_probs=14.7
Q ss_pred HHHHHHHHhccCCcchhHHHHHHHHHHHH
Q 043311 161 AVLIKGLAAAADGNAKILGDAQKYLMEMV 189 (257)
Q Consensus 161 ~~ll~~~~~~~~~~~~~~~~a~~~~~~m~ 189 (257)
-.+|+.|.+ .|.+++|.++.....
T Consensus 110 P~Lm~~ci~-----~g~y~eALel~~~~~ 133 (338)
T PF04124_consen 110 PQLMDTCIR-----NGNYSEALELSAHVR 133 (338)
T ss_pred HHHHHHHHh-----cccHhhHHHHHHHHH
Confidence 356677777 334777776665544
No 469
>PHA02878 ankyrin repeat protein; Provisional
Probab=24.64 E-value=3.9e+02 Score=23.47 Aligned_cols=171 Identities=9% Similarity=-0.002 Sum_probs=83.9
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHH-----HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAV-----KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ 137 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-----~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 137 (257)
...+..|+.+.+..++ +.|..++.. |-+...+..|+.+.+..+++....... ...++.+ ...+..++
T Consensus 42 h~A~~~g~~e~vk~Ll----~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~---~~~~~~l-~~a~~~~~ 113 (477)
T PHA02878 42 HQAVEARNLDVVKSLL----TRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSV---FYTLVAI-KDAFNNRN 113 (477)
T ss_pred HHHHHcCCHHHHHHHH----HCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhcccc---ccchhhH-HHHHHcCC
Confidence 4456677776665554 445544432 455555667777766666655433221 2223333 33444566
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHHcCCHH
Q 043311 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGT---YTAVFEAFVRAQKVD 214 (257)
Q Consensus 138 ~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~---~~~li~~~~~~~~~~ 214 (257)
.+-+..++..-.......+.. ..+.. .. .+.. -.++.+.+.+.|..++... -.+.+-..+..|+.+
T Consensus 114 ~ei~~~Ll~~~~~~~~~~~~~------~~~~~-~~--~~~~--~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~ 182 (477)
T PHA02878 114 VEIFKIILTNRYKNIQTIDLV------YIDKK-SK--DDII--EAEITKLLLSYGADINMKDRHKGNTALHYATENKDQR 182 (477)
T ss_pred HHHHHHHHhCcccCcccCcHH------HHhhc-cc--hhhH--HHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHH
Confidence 655544443211111111111 11111 00 0001 1236666777787776543 234555567778766
Q ss_pred HHHHHHHHHHHCCCCCCHHH--HHHHHHHhhcCCchhhHHhhhc
Q 043311 215 EARGLLQQMKAKGFVPDEKA--VKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 215 ~a~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
.+..+ .+.|..++... -.+.+......|..+.++.+++
T Consensus 183 iv~~L----l~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~ 222 (477)
T PHA02878 183 LTELL----LSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLE 222 (477)
T ss_pred HHHHH----HHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence 55444 45666665331 1234445556777777776654
No 470
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=24.38 E-value=3.2e+02 Score=26.23 Aligned_cols=19 Identities=11% Similarity=0.233 Sum_probs=10.3
Q ss_pred HHHHHHHHcCCHHHHHHHH
Q 043311 202 AVFEAFVRAQKVDEARGLL 220 (257)
Q Consensus 202 ~li~~~~~~~~~~~a~~~~ 220 (257)
..+...+..|+.+.+..++
T Consensus 624 ~~L~~Aa~~g~~~~v~~Ll 642 (823)
T PLN03192 624 DLLCTAAKRNDLTAMKELL 642 (823)
T ss_pred hHHHHHHHhCCHHHHHHHH
Confidence 3445556666666554444
No 471
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.35 E-value=5.8e+02 Score=23.70 Aligned_cols=102 Identities=11% Similarity=0.024 Sum_probs=58.7
Q ss_pred cccCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 043311 64 VDEEPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALR 143 (257)
Q Consensus 64 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 143 (257)
...+.|+++.|.++-.+.. ...-+..|-++..+.+++..|.+.|..-.. |..|+-.+...|+.+....
T Consensus 646 lal~lgrl~iA~~la~e~~---s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVEAN---SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hhhhcCcHHHHHHHHHhhc---chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 4445555555555443322 223334577777788888888887766443 5677777777887665555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHH
Q 043311 144 VFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188 (257)
Q Consensus 144 ~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m 188 (257)
+-..-.+.|. .|...-+|-. .|+++++.+++..-
T Consensus 714 la~~~~~~g~------~N~AF~~~~l-----~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 714 LASLAKKQGK------NNLAFLAYFL-----SGDYEECLELLIST 747 (794)
T ss_pred HHHHHHhhcc------cchHHHHHHH-----cCCHHHHHHHHHhc
Confidence 5555555542 2233334444 33377777766553
No 472
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=24.11 E-value=5.4e+02 Score=23.25 Aligned_cols=89 Identities=16% Similarity=0.210 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCC---CCCH----------HHHHHH
Q 043311 138 GKEALRVFMRML-ASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM---RPNA----------GTYTAV 203 (257)
Q Consensus 138 ~~~a~~~~~~m~-~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~---~p~~----------~~~~~l 203 (257)
.++....+..+. +.|+..+...+..+.++. .|.+.++..+++.+...|- .++. .....+
T Consensus 180 ~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a-------~Gs~RDalslLDq~i~~~~~~It~~~v~~~lG~~~~~~~~~~ 252 (515)
T COG2812 180 LEEIAKHLAAILDKEGINIEEDALSLIARAA-------EGSLRDALSLLDQAIAFGEGEITLESVRDMLGLTDIEKLLSL 252 (515)
T ss_pred HHHHHHHHHHHHHhcCCccCHHHHHHHHHHc-------CCChhhHHHHHHHHHHccCCcccHHHHHHHhCCCCHHHHHHH
Confidence 355555555555 457777777666665532 3447778888887775431 1111 111112
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 043311 204 FEAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234 (257)
Q Consensus 204 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t 234 (257)
+. ....++...++..++++.+.|..|....
T Consensus 253 ~~-~i~~~d~~~~~~~~~~l~~~G~~~~~~l 282 (515)
T COG2812 253 LE-AILKGDAKEALRLINELIEEGKDPEAFL 282 (515)
T ss_pred HH-HHHccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 22 2345788899999999998888776543
No 473
>PRK14136 recX recombination regulator RecX; Provisional
Probab=23.99 E-value=4.2e+02 Score=22.01 Aligned_cols=99 Identities=11% Similarity=0.055 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHhccC----------CcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043311 153 VAPNAYTYAVLIKGLAAAAD----------GNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222 (257)
Q Consensus 153 ~~~~~~t~~~ll~~~~~~~~----------~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 222 (257)
..|-...|+..+..|..... ...-..+.+..+++.+.+.|+.-|..--..++.. +.+. ..-..+-.+
T Consensus 158 ~~~~~~lk~kAL~lLSrReRSe~ELr~KL~kkG~~ee~IE~VIerLke~gYLDDeRFAesyVr~--R~~k-kGp~rIrqE 234 (309)
T PRK14136 158 SRPARSLKGRALGYLSRREYSRAELARKLAPYADESDSVEPLLDALEREGWLSDARFAESLVHR--RASR-VGSARIVSE 234 (309)
T ss_pred cccHHHHHHHHHHHhhcccccHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCcCHHHHHHHHHHH--Hhhc-hhHHHHHHH
Q ss_pred HHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 223 MKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 223 m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
+..+|| +...+...|..+ ..-+.+.+..+++|
T Consensus 235 LrQKGI--d~eLIEqALeei-eEDE~E~A~~L~eK 266 (309)
T PRK14136 235 LKRHAV--GDALVESVGAQL-RETEFERAQAVWRK 266 (309)
T ss_pred HHHcCC--CHHHHHHHHHhc-cHhHHHHHHHHHHH
No 474
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=23.93 E-value=5.1e+02 Score=22.89 Aligned_cols=87 Identities=7% Similarity=0.098 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhc--cCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH--
Q 043311 139 KEALRVFMRMLASGV-APNAYTYAVLIKGLAAA--ADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV-- 213 (257)
Q Consensus 139 ~~a~~~~~~m~~~g~-~~~~~t~~~ll~~~~~~--~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~-- 213 (257)
...++++..+.+.+. .++...-..+++..+.. .......++.+.++|+.+...|..|+......+.--|.-.+-.
T Consensus 152 ~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi~~~~~l 231 (464)
T PF11864_consen 152 SDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSIVNSVSL 231 (464)
T ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhHhccccc
Confidence 344455555555442 34545555444433222 1112445788888888888888888776655554444333322
Q ss_pred -HHHHHHHHHHHH
Q 043311 214 -DEARGLLQQMKA 225 (257)
Q Consensus 214 -~~a~~~~~~m~~ 225 (257)
+.++++.+.+.+
T Consensus 232 ~~~~w~~m~nL~~ 244 (464)
T PF11864_consen 232 CKPSWRTMRNLLK 244 (464)
T ss_pred chhHHHHHHHHHc
Confidence 344444444443
No 475
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=23.85 E-value=4.3e+02 Score=25.24 Aligned_cols=152 Identities=17% Similarity=0.229 Sum_probs=84.9
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHH-----HH-----HHHHHhcCChHHHHHHHHHHHhC--CCCCCHHH-----H
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAV-----KM-----FDALSKDGLTHEALQLFAQIKDK--GHMPDVVA-----H 125 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-----~l-----l~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~-----~ 125 (257)
..|....+++...++.+.+....-.-+.. .+ ++-=-+-|+-+.|+++.--+.+. .+.||... |
T Consensus 209 lSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIY 288 (1226)
T KOG4279|consen 209 LSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIY 288 (1226)
T ss_pred hhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCceeeeechhh
Confidence 67778889999999999988743111111 01 22223457788888876666543 46788654 3
Q ss_pred HHHH--HHHHhcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhccCCcchhHHHHHHHH------HHHH-hCCC
Q 043311 126 TAVI--EAYASAGQGKEALRVFMRMLASGVAPNAY---TYAVLIKGLAAAADGNAKILGDAQKYL------MEMV-GKGM 193 (257)
Q Consensus 126 ~~li--~~~~~~~~~~~a~~~~~~m~~~g~~~~~~---t~~~ll~~~~~~~~~~~~~~~~a~~~~------~~m~-~~g~ 193 (257)
.-+. +.|-..+..+.|.++|++--+ +.|+.. -+.+++.+-+.. ++...++- ..+. ..|-
T Consensus 289 KDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~~-------Fens~Elq~IgmkLn~LlgrKG~ 359 (1226)
T KOG4279|consen 289 KDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGEH-------FENSLELQQIGMKLNSLLGRKGA 359 (1226)
T ss_pred hhhhhccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhhh-------ccchHHHHHHHHHHHHHhhccch
Confidence 2222 224455667888888887665 466654 355555544331 22222221 1111 1111
Q ss_pred C------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 043311 194 R------PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK 226 (257)
Q Consensus 194 ~------p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 226 (257)
- -|+. ..+.+-+-++++.+|...-+.|-+.
T Consensus 360 leklq~YWdV~---~y~~asVLAnd~~kaiqAae~mfKL 395 (1226)
T KOG4279|consen 360 LEKLQEYWDVA---TYFEASVLANDYQKAIQAAEMMFKL 395 (1226)
T ss_pred HHHHHHHHhHH---HhhhhhhhccCHHHHHHHHHHHhcc
Confidence 0 1222 2355666778888888887777654
No 476
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=23.79 E-value=2.9e+02 Score=23.66 Aligned_cols=55 Identities=18% Similarity=0.162 Sum_probs=37.9
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhccCCcchhHHHHHHHHHHHH
Q 043311 131 AYASAGQGKEALRVFMRMLASGVAPNAY--TYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189 (257)
Q Consensus 131 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~--t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~ 189 (257)
-+.+.+++..|.++|+++.+. +.++.. .|..+..+|..... -.+++|.+.++...
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~---fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDR---FDHKEALEYLEKLL 196 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHc---cCHHHHHHHHHHHH
Confidence 455889999999999999987 666555 55666666665332 23567777666544
No 477
>PRK10304 ferritin; Provisional
Probab=23.08 E-value=1.8e+02 Score=21.50 Aligned_cols=96 Identities=15% Similarity=0.072 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 043311 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEAR 217 (257)
Q Consensus 138 ~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 217 (257)
.+-|..+++.+...|-.|+......-. ..++...++|+...+.. .--+..++-++..+.+.+|+.. .
T Consensus 51 ~~HA~kl~~~i~~rgg~~~~~~i~~p~-----------~~~~s~~e~~~~~l~~E-~~vt~~i~~l~~~A~~~~D~~t-~ 117 (165)
T PRK10304 51 MTHMQRLFDYLTDTGNLPRINTVESPF-----------AEYSSLDELFQETYKHE-QLITQKINELAHAAMTNQDYPT-F 117 (165)
T ss_pred HHHHHHHHHHHHHcCCCeeeCCCCCCc-----------cccCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCHhH-H
Confidence 567888888888877666532211000 01223333333332210 0134556667777777666543 2
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhhcCCc
Q 043311 218 GLLQQMKAKGFVPDEKAVKEALIDKRGQGF 247 (257)
Q Consensus 218 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 247 (257)
.+++.+.+..++ .......++.-....|.
T Consensus 118 ~fl~~fl~EQve-Ee~~~~~l~~~l~~~~~ 146 (165)
T PRK10304 118 NFLQWYVSEQHE-EEKLFKSIIDKLSLAGK 146 (165)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHhhCC
Confidence 333444433221 23344444444444443
No 478
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=22.99 E-value=4.3e+02 Score=25.40 Aligned_cols=112 Identities=12% Similarity=0.078 Sum_probs=48.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHH--HH
Q 043311 126 TAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTY--AVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGT--YT 201 (257)
Q Consensus 126 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~--~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~ 201 (257)
..++.+ +..|+.+ +++.+.+.|..+|.... .+.+...+..|+ .+.+. .+.+.|..++... -+
T Consensus 527 ~~L~~A-a~~g~~~----~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~-----~~~v~----~Ll~~gadin~~d~~G~ 592 (823)
T PLN03192 527 SNLLTV-ASTGNAA----LLEELLKAKLDPDIGDSKGRTPLHIAASKGY-----EDCVL----VLLKHACNVHIRDANGN 592 (823)
T ss_pred hHHHHH-HHcCCHH----HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCh-----HHHHH----HHHhcCCCCCCcCCCCC
Confidence 444444 4567765 44556667776665432 223333444232 44333 3444455554321 12
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhh
Q 043311 202 AVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILF 255 (257)
Q Consensus 202 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~ 255 (257)
+.+-..+..|+.+-+.-+++ .+-..+..+-...+...+..|+.+.++.++
T Consensus 593 TpL~~A~~~g~~~iv~~L~~----~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll 642 (823)
T PLN03192 593 TALWNAISAKHHKIFRILYH----FASISDPHAAGDLLCTAAKRNDLTAMKELL 642 (823)
T ss_pred CHHHHHHHhCCHHHHHHHHh----cCcccCcccCchHHHHHHHhCCHHHHHHHH
Confidence 22333345555554444432 121122222223344445555555554443
No 479
>PF05119 Terminase_4: Phage terminase, small subunit; InterPro: IPR006448 This entry is represented by Streptococcus phage 7201, Orf21. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This group of sequences describe the distinct family of phage (and integrated prophage) putative terminase small subunit sequnces. Members tend to be encoded by the gene adjacent to the phage terminase large subunit gene.
Probab=22.95 E-value=1.1e+02 Score=20.07 Aligned_cols=42 Identities=12% Similarity=0.125 Sum_probs=20.4
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCC
Q 043311 144 VFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194 (257)
Q Consensus 144 ~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~ 194 (257)
+...+.+.|+ -..+...+|..||. . +..-.++...+.+.|+.
T Consensus 8 i~~~L~~~~~--l~~~D~~~l~~yc~-----~--~~~~~~~~~~l~~~G~~ 49 (100)
T PF05119_consen 8 IVPELKELGI--LSNLDVPLLERYCE-----A--YSRYREAEKELKKEGFV 49 (100)
T ss_pred HHHHHHHcCC--CcHhHHHHHHHHHH-----H--HHHHHHHHHHHHHcCce
Confidence 3344444443 33444556666655 1 44444445555555553
No 480
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=22.78 E-value=3.6e+02 Score=20.78 Aligned_cols=57 Identities=12% Similarity=0.091 Sum_probs=37.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHH
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGHMPDVV-AHTAVIEAYASAGQGKEALRVFMRML 149 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~ 149 (257)
+++..|...|+++.|.++|.-+.... ..|+. .|..=+..+.+.+.-....+.|+.|.
T Consensus 46 ~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~ 103 (199)
T PF04090_consen 46 DLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQNSELEFLEWLI 103 (199)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCcchHHHHHHHHH
Confidence 58888999999999999999988752 33432 45555555555554444434444443
No 481
>cd04445 DEP_PLEK1 DEP (Dishevelled, Egl-10, and Pleckstrin) domain found in pleckstrin 1-like proteins. Pleckstrin 1 plays a role in cell spreading and reorganization of actin cytoskeleton in platelets and leukocytes. Its activity is highly regulated by phosphorylation, mainly by protein kinase C. Pleckstrin-like proteins contain a central DEP domain, flanked by 2 PH (pleckstrin homology) domains.
Probab=22.74 E-value=2.3e+02 Score=18.99 Aligned_cols=57 Identities=18% Similarity=0.154 Sum_probs=35.6
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHCC
Q 043311 96 ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ---GKEALRVFMRMLASG 152 (257)
Q Consensus 96 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~g 152 (257)
.+....+++...+......+..+-|+..|-+.+++=+.+... -++|+.+=..+...|
T Consensus 5 lv~sMqDp~~GIk~~~~~~~~tv~~hcftGsdVVdWLv~~~~v~~r~EAl~las~Ll~eG 64 (99)
T cd04445 5 LYLSMKDPEKGIKELNLEKDKKVFNHCFTGSCVIDWLVSNQSVRNRQEGLMLASSLLNEG 64 (99)
T ss_pred HHHHHhCcccchhhhhHHHhhccccceecccHHHHHHHHhhcccchHHHHHHHHHHHHcC
Confidence 344555666666666666665666666776676666665543 356777777777666
No 482
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=22.62 E-value=5e+02 Score=22.33 Aligned_cols=53 Identities=17% Similarity=0.201 Sum_probs=34.4
Q ss_pred chhHHHHHHHHHHHHhCCCCCCHHHHHHHH----HHHHHcCCHHHHHHHHHHHHHCC
Q 043311 175 AKILGDAQKYLMEMVGKGMRPNAGTYTAVF----EAFVRAQKVDEARGLLQQMKAKG 227 (257)
Q Consensus 175 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li----~~~~~~~~~~~a~~~~~~m~~~g 227 (257)
.++.+-+...+..|..+.+.-=+.||.+|= ..-+..+.-++|.+..-.|.+.|
T Consensus 290 Dnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 290 DNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDG 346 (422)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 344677777777777665555566777763 33334566778888777777654
No 483
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.56 E-value=5.7e+02 Score=22.99 Aligned_cols=75 Identities=16% Similarity=0.157 Sum_probs=42.4
Q ss_pred HHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCC---C----------CCCHHHHHHHHHHHHHcCCHHH
Q 043311 149 LASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG---M----------RPNAGTYTAVFEAFVRAQKVDE 215 (257)
Q Consensus 149 ~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g---~----------~p~~~~~~~li~~~~~~~~~~~ 215 (257)
.+.|+..+......+++.. .|.+..+..++++....| + .++....-.++++.. .++.+.
T Consensus 192 ~~egi~~~~~al~~ia~~s-------~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~-~~d~~~ 263 (509)
T PRK14958 192 KEENVEFENAALDLLARAA-------NGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALA-AKAGDR 263 (509)
T ss_pred HHcCCCCCHHHHHHHHHHc-------CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHH-cCCHHH
Confidence 3456666666555555432 122666666665544322 1 122233333444443 477888
Q ss_pred HHHHHHHHHHCCCCCC
Q 043311 216 ARGLLQQMKAKGFVPD 231 (257)
Q Consensus 216 a~~~~~~m~~~g~~p~ 231 (257)
+..++++|...|..|.
T Consensus 264 ~l~~~~~l~~~g~~~~ 279 (509)
T PRK14958 264 LLGCVTRLVEQGVDFS 279 (509)
T ss_pred HHHHHHHHHHcCCCHH
Confidence 8888888888888775
No 484
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=22.55 E-value=4e+02 Score=21.37 Aligned_cols=63 Identities=19% Similarity=0.290 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHh---cC--ChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhccCCcchhHHHHHHHHH
Q 043311 122 VVAHTAVIEAYAS---AG--QGKEALRVFMRMLASGVAPN-AYTYAVLIKGLAAAADGNAKILGDAQKYLM 186 (257)
Q Consensus 122 ~~~~~~li~~~~~---~~--~~~~a~~~~~~m~~~g~~~~-~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~ 186 (257)
..+-...++++.. .| +-+.+.++|.......+..+ ...|+.++..++.... ........++|+
T Consensus 127 ~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~--~EL~~~I~~~f~ 195 (249)
T PF06685_consen 127 EYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFLERNPSFLWGSLVADICDLYP--EELLPEIRKAFE 195 (249)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhcCH--HHhHHHHHHHHH
Confidence 3333444554433 33 45889999999887766555 5679999998888555 333444444444
No 485
>PHA02798 ankyrin-like protein; Provisional
Probab=22.20 E-value=5.5e+02 Score=22.66 Aligned_cols=130 Identities=11% Similarity=0.123 Sum_probs=59.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHH
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGHMPDVV---AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAY---TYAVLIK 165 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~---t~~~ll~ 165 (257)
+++..|....+. -.++.+.+.++|..++.. -.+.|..++........-.++.+-+.+.|..+|.. -.+.+.-
T Consensus 38 ~~~~~yl~~~~~--~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~ 115 (489)
T PHA02798 38 SIFQKYLQRDSP--STDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYC 115 (489)
T ss_pred hHHHHHHhCCCC--CHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHH
Confidence 455555555432 235666666777766531 22223222221112334467788888888766543 3344443
Q ss_pred HHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 043311 166 GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGT--YTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231 (257)
Q Consensus 166 ~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 231 (257)
++.. +. . ...++++.+.+.|..++... -.+.+..+++.|. ..-.++++.+.+.|..++
T Consensus 116 a~~~-~~--~----~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~-~~~~~vv~~Ll~~gadin 175 (489)
T PHA02798 116 LLSN-GY--I----NNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNH-HIDIEIIKLLLEKGVDIN 175 (489)
T ss_pred HHHc-CC--c----ChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCC-cchHHHHHHHHHhCCCcc
Confidence 3322 11 0 12344555555665554331 1223333444443 011233344445555543
No 486
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=21.90 E-value=4.2e+02 Score=21.22 Aligned_cols=50 Identities=12% Similarity=0.171 Sum_probs=22.3
Q ss_pred CHHHHHHHHHHHHhCCCCCcHHHHHHHHHh----cCChHHHHHHHHHHHhCCCC
Q 043311 70 DPRNLQEIFHKMRTEGLTNNAVKMFDALSK----DGLTHEALQLFAQIKDKGHM 119 (257)
Q Consensus 70 ~~~~a~~~~~~m~~~~~~p~~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~ 119 (257)
+...|.++|....+.|..+-...|-..|.. ..+..+|...|+...+.|..
T Consensus 92 ~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~ 145 (292)
T COG0790 92 DKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNV 145 (292)
T ss_pred cHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCCh
Confidence 344555555544444443333333333322 22445555555555555443
No 487
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.88 E-value=2.3e+02 Score=25.64 Aligned_cols=69 Identities=16% Similarity=0.186 Sum_probs=36.6
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-----CCHHHHHHHHH---HHHhccCCcchhHHH
Q 043311 109 LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA-----PNAYTYAVLIK---GLAAAADGNAKILGD 180 (257)
Q Consensus 109 ~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-----~~~~t~~~ll~---~~~~~~~~~~~~~~~ 180 (257)
+++++...|++||..||++ ..+++.+++-..|.+.|-. |....-.--.+ .-++ ...+|+
T Consensus 255 IleDl~~LgIkpd~~TyTS--------DyF~~i~dycv~likeGKAYvDDTp~E~Mr~ER~~gv~Sk~R-----~~~vEe 321 (712)
T KOG1147|consen 255 ILEDLSLLGIKPDRVTYTS--------DYFDEIMDYCVKLIKEGKAYVDDTPTEQMRDEREQGVESKCR-----SNSVEE 321 (712)
T ss_pred HHHHHHHhCcCcceeeech--------hhHHHHHHHHHHHHhcCcccccCCcHHHHHHHHhcccccccc-----CCCHHH
Confidence 5666677789999888764 2233334444444444311 11111111111 1223 344888
Q ss_pred HHHHHHHHHh
Q 043311 181 AQKYLMEMVG 190 (257)
Q Consensus 181 a~~~~~~m~~ 190 (257)
-+++|++|.+
T Consensus 322 nl~iw~EM~k 331 (712)
T KOG1147|consen 322 NLRIWEEMKK 331 (712)
T ss_pred HHHHHHHHhc
Confidence 8899998874
No 488
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=21.61 E-value=7e+02 Score=23.69 Aligned_cols=51 Identities=20% Similarity=0.182 Sum_probs=32.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCc
Q 043311 196 NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGF 247 (257)
Q Consensus 196 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 247 (257)
...+..+++.++ +.++.+.|...+.+|.+.|..|....-..++.+...-|.
T Consensus 258 hyd~Isa~~ksi-rgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdigl 308 (725)
T PRK13341 258 HFDTISAFIKSL-RGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGL 308 (725)
T ss_pred CHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCC
Confidence 334444444443 446788888888888888887775555555555545554
No 489
>cd01056 Euk_Ferritin eukaryotic ferritins. Eukaryotic Ferritin (Euk_Ferritin) domain. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary role, negatively charged r
Probab=21.47 E-value=1.1e+02 Score=22.35 Aligned_cols=20 Identities=10% Similarity=-0.074 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHCCCCCCH
Q 043311 138 GKEALRVFMRMLASGVAPNA 157 (257)
Q Consensus 138 ~~~a~~~~~~m~~~g~~~~~ 157 (257)
++.|..+++.+...|-.|+.
T Consensus 51 ~~HA~~l~~~i~~rgg~~~~ 70 (161)
T cd01056 51 REHAEKLIKYQNKRGGRVVL 70 (161)
T ss_pred HHHHHHHHHHHHHcCCeeec
Confidence 45566666666666544443
No 490
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=21.46 E-value=3e+02 Score=19.38 Aligned_cols=110 Identities=9% Similarity=0.092 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHHHhCCCCCcHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----------CCh
Q 043311 70 DPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASA-----------GQG 138 (257)
Q Consensus 70 ~~~~a~~~~~~m~~~~~~p~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-----------~~~ 138 (257)
++.-|..++......+ +....++.+.+..-.-.++++...+......|. ...+..|.-|.+. +..
T Consensus 4 Np~IA~~~l~~l~~s~---~~~~yld~lv~~~~sl~s~EvVn~L~~~~~~p~-efl~~yI~~cI~~ce~~kd~~~q~R~V 79 (126)
T PF10155_consen 4 NPNIAIEILVKLINSP---NFKEYLDVLVSMDMSLHSMEVVNRLTTSFSLPQ-EFLHMYISNCIKSCESIKDKYMQNRLV 79 (126)
T ss_pred cHHHHHHHHHHHcCCc---hHHHHHHHHHcCCCchhHHHHHHHHHcCCCCcH-HHHHHHHHHHHHHHHhhcccccccchh
Confidence 4455555555555443 344566777766666667777777666543333 3333333333322 112
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHH
Q 043311 139 KEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEM 188 (257)
Q Consensus 139 ~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m 188 (257)
.-.-.+++.+.+.|+.-....|.-+=.-|.+... +.+|..+|+-+
T Consensus 80 Rlvcvfl~sLir~~i~~~~~l~~evq~FClefs~-----i~Ea~~L~kll 124 (126)
T PF10155_consen 80 RLVCVFLQSLIRNKIIDVEDLFIEVQAFCLEFSR-----IKEASALFKLL 124 (126)
T ss_pred hhHHHHHHHHHHcCCCchHHHHhhHHHHHHHHcc-----HHHHHHHHHHH
Confidence 2333344555555554333344443333444222 56666666544
No 491
>PF14401 RLAN: RimK-like ATPgrasp N-terminal domain
Probab=21.28 E-value=23 Score=25.92 Aligned_cols=73 Identities=18% Similarity=0.150 Sum_probs=36.5
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 184 YLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 184 ~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
++.+...+.+-|++.|.+=|=+.-.-.-...+....+.+........+..++...+.-+...+....|.++|+
T Consensus 37 LLAEARgh~viPsV~ti~DL~~~~l~~~~~~~l~~~l~~~l~~~~~~~~~~l~iyFG~~~~~~~~~lAr~lFe 109 (153)
T PF14401_consen 37 LLAEARGHRVIPSVRTINDLSRKSLYRLALEELDPLLQKALAKLIKSERFELSIYFGQTPDPRLERLARQLFE 109 (153)
T ss_pred HHHHHcCCCCCCchhhHHHhhhcccccccHHHHhHHHHHHHhcccCCceEEEEEEECCCCCHHHHHHHHHHHH
Confidence 5556666667777777665433322222344444444444433234444444444444444455555555554
No 492
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=21.17 E-value=5.5e+02 Score=22.24 Aligned_cols=129 Identities=14% Similarity=0.140 Sum_probs=72.1
Q ss_pred HHHHHHHhCCCCCcHH------HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH--H--HHHhcCChHHHHHHH
Q 043311 76 EIFHKMRTEGLTNNAV------KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVI--E--AYASAGQGKEALRVF 145 (257)
Q Consensus 76 ~~~~~m~~~~~~p~~~------~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li--~--~~~~~~~~~~a~~~~ 145 (257)
-+++.+.+.|+.|+.. +++-++...+..++..+++.... .+...+...- . .+...+........+
T Consensus 100 Gv~kaL~e~gl~p~~i~GtS~Gaivaa~~a~~~~~e~~~~l~~~~-----~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l 174 (391)
T cd07229 100 GVVKALWLRGLLPRIITGTATGALIAALVGVHTDEELLRFLDGDG-----IDLSAFNRLRGKKSLGYSGYGWLGTLGRRI 174 (391)
T ss_pred HHHHHHHHcCCCCceEEEecHHHHHHHHHHcCCHHHHHHHHhccc-----hhhhhhhhhccccccccccccccchHHHHH
Confidence 5678888999999964 48888887777777777665421 1111111100 0 111112223344555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHH----------------HHhCCCCCCHHHHHHHHHHHHH
Q 043311 146 MRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME----------------MVGKGMRPNAGTYTAVFEAFVR 209 (257)
Q Consensus 146 ~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~----------------m~~~g~~p~~~~~~~li~~~~~ 209 (257)
....+.|--.|...+...++.+...-. +++|.+--.. +.+.--.||...|.++..+|+-
T Consensus 175 ~r~l~~G~l~D~~~l~~~lr~~lgd~T-----FeEAy~rTgriLnItv~~~~~~~~p~LLNylTaPnVlIwsAv~aS~a~ 249 (391)
T cd07229 175 QRLLREGYFLDVKVLEEFVRANLGDLT-----FEEAYARTGRVLNITVAPSAVSGSPNLLNYLTAPNVLIWSAALASNAS 249 (391)
T ss_pred HHHHcCCCcccHHHHHHHHHHHcCCCc-----HHHHHHhhCCEEEEEEECCCCCCCCeeeecCCCCCchHHHHHHHHcCC
Confidence 566666767777777777766543111 4554421111 1111237888999999888876
Q ss_pred cCCHH
Q 043311 210 AQKVD 214 (257)
Q Consensus 210 ~~~~~ 214 (257)
.+-+.
T Consensus 250 p~~~~ 254 (391)
T cd07229 250 SAALY 254 (391)
T ss_pred ccccC
Confidence 66544
No 493
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=21.07 E-value=2.3e+02 Score=20.80 Aligned_cols=50 Identities=14% Similarity=0.159 Sum_probs=28.5
Q ss_pred ChHHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043311 102 LTHEALQ-LFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151 (257)
Q Consensus 102 ~~~~a~~-~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 151 (257)
+.++=+. +|+.+....+...+...-.-|....+.++++.|.++...+.-.
T Consensus 69 D~~KRL~iLfd~ln~g~Ls~~v~~~L~~L~~aL~~~d~~~A~~Ih~~L~t~ 119 (157)
T PF07304_consen 69 DIEKRLNILFDHLNNGKLSKPVVDKLHQLAQALQARDYDAADEIHVDLMTD 119 (157)
T ss_dssp HHHHHHHHHHHHHHHT-S-HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3334344 3445544444444555555556667788899999998887743
No 494
>PF12002 MgsA_C: MgsA AAA+ ATPase C terminal; InterPro: IPR021886 The MgsA protein possesses DNA-dependent ATPase and ssDNA annealing activities []. MgsA contributes to the recovery of stalled replication forks and therefore prevents genomic instability caused by aberrant DNA replication []. Additionally, MgsA may play a role in chromosomal segregation []. This is consistent with a report that MgsA co-localises with the replisome and affects chromosome segregation []. This domain represents the C-terminal region of MgsA. ; PDB: 2R9G_A 2QW6_D 3CTD_B 3PVS_B 3BGE_A.
Probab=21.00 E-value=3.6e+02 Score=20.13 Aligned_cols=57 Identities=21% Similarity=0.197 Sum_probs=35.2
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCC
Q 043311 137 QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193 (257)
Q Consensus 137 ~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~ 193 (257)
|.+.|+-++..|.+.|-.|....=-.++-+....|-.+-.-...+...++..+.-|.
T Consensus 3 D~dAAlywlarml~~GeDp~~i~RRL~i~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 59 (168)
T PF12002_consen 3 DPDAALYWLARMLEGGEDPRFIARRLIIIASEDIGLADPQALSIAVAAYQAVERIGM 59 (168)
T ss_dssp -HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTGGGSTCHHHHHHHHHHHHHHH-C
T ss_pred ChHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhhccCccHHHHHHHHHHHHHHHCC
Confidence 567777788888887766666666666666666665445556666666666665554
No 495
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=20.75 E-value=3.1e+02 Score=19.28 Aligned_cols=40 Identities=15% Similarity=0.206 Sum_probs=19.0
Q ss_pred HHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHH
Q 043311 182 QKYLMEMVGKGMRPNAG-TYTAVFEAFVRAQKVDEARGLLQ 221 (257)
Q Consensus 182 ~~~~~~m~~~g~~p~~~-~~~~li~~~~~~~~~~~a~~~~~ 221 (257)
.++|+.|...|+--... .|...-..+-..|++.+|.++|+
T Consensus 83 ~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 83 RELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44555555554433332 24444444445555555555553
No 496
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=20.65 E-value=5.9e+02 Score=22.46 Aligned_cols=38 Identities=16% Similarity=0.134 Sum_probs=17.6
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043311 113 IKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150 (257)
Q Consensus 113 m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 150 (257)
+.+..+.||+..+.-+...|++.=-++-|.++++-...
T Consensus 465 l~kl~l~PDiylidwiftlyskslpldlacRIwDvy~r 502 (586)
T KOG2223|consen 465 LKKLELTPDIYLIDWIFTLYSKSLPLDLACRIWDVYCR 502 (586)
T ss_pred HHhccCCCchhhHHHHHHHHhccCChHHhhhhhheeee
Confidence 33334444444444444444444444444444444443
No 497
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=20.57 E-value=2.9e+02 Score=18.88 Aligned_cols=48 Identities=15% Similarity=0.250 Sum_probs=19.6
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 043311 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA 154 (257)
Q Consensus 106 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 154 (257)
+..+.+.+.+.|+.-|..-....+......+ -..-..+-.++.+.|+.
T Consensus 11 I~~vi~~l~~~gyidD~~ya~~~v~~~~~~~-~~G~~~I~~~L~~kGi~ 58 (121)
T PF02631_consen 11 IEEVIDRLKELGYIDDERYAESYVRSRLRRK-GKGPRRIRQKLKQKGID 58 (121)
T ss_dssp HHHHHHHHHHTTSS-HHHHHHHHHHHHHHHT-T--HHHHHHHHHHTT--
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHhcccc-cccHHHHHHHHHHHCCC
Confidence 4444555555555444444444444444322 24444444555555444
No 498
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=20.34 E-value=5.4e+02 Score=21.82 Aligned_cols=90 Identities=16% Similarity=0.133 Sum_probs=60.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHCCC----CCCHHHHHHH
Q 043311 93 MFDALSKDGLTHEALQLFAQIKD----KGHMPDVVAHTAVIEAYASAGQ-GKEALRVFMRMLASGV----APNAYTYAVL 163 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~----~g~~p~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~g~----~~~~~t~~~l 163 (257)
.-.-|++.|+.+.|.+.+....+ -|.+.|+..+.+-+..+....+ +.+-.+..+.|.+.|- +--..+|-.+
T Consensus 110 kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gl 189 (393)
T KOG0687|consen 110 KAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGL 189 (393)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHH
Confidence 56678999999999998876654 3788899888877766544332 3444445555665553 2334677766
Q ss_pred HHHHHhccCCcchhHHHHHHHHHHHH
Q 043311 164 IKGLAAAADGNAKILGDAQKYLMEMV 189 (257)
Q Consensus 164 l~~~~~~~~~~~~~~~~a~~~~~~m~ 189 (257)
-..-.+ ++.+|-.+|-+..
T Consensus 190 y~msvR-------~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 190 YCMSVR-------NFKEAADLFLDSV 208 (393)
T ss_pred HHHHHH-------hHHHHHHHHHHHc
Confidence 655444 3888888887765
No 499
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=20.31 E-value=4e+02 Score=26.26 Aligned_cols=60 Identities=18% Similarity=0.126 Sum_probs=45.1
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 043311 99 KDGLTHEALQLFAQIKDKGHMPDVV-AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAY 158 (257)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 158 (257)
....+.+++++|+.|.+.|+.+... .|...=..+.+.+.+++|..+|+.=.+..-+|-..
T Consensus 90 ~~e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP~~r 150 (974)
T KOG1166|consen 90 LREELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEPLER 150 (974)
T ss_pred HHHHHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHH
Confidence 5667889999999999998877654 45555556777788999998888776665565543
No 500
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=20.29 E-value=5.2e+02 Score=21.69 Aligned_cols=24 Identities=8% Similarity=0.206 Sum_probs=15.3
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCC
Q 043311 208 VRAQKVDEARGLLQQMKAKGFVPD 231 (257)
Q Consensus 208 ~~~~~~~~a~~~~~~m~~~g~~p~ 231 (257)
+..++..+..+..+++.+.|..|-
T Consensus 266 a~S~d~~~~v~~~Rei~~sg~~~~ 289 (346)
T KOG0989|consen 266 ALSADTPNTVKRVREIMRSGYSPL 289 (346)
T ss_pred HHccChHHHHHHHHHHHHhccCHH
Confidence 445666677777777766666553
Done!