Query 043311
Match_columns 257
No_of_seqs 186 out of 1965
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 05:54:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043311.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043311hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 7.4E-37 2.5E-41 264.7 19.4 183 62-249 33-227 (501)
2 4g26_A Pentatricopeptide repea 100.0 6.5E-35 2.2E-39 252.6 20.6 181 72-257 7-200 (501)
3 3spa_A Mtrpol, DNA-directed RN 99.9 3.5E-24 1.2E-28 192.6 11.6 131 120-255 125-259 (1134)
4 3spa_A Mtrpol, DNA-directed RN 99.9 8.4E-23 2.9E-27 183.8 9.9 146 91-246 131-286 (1134)
5 2xpi_A Anaphase-promoting comp 99.8 1.9E-17 6.6E-22 145.8 18.0 228 22-257 303-541 (597)
6 2xpi_A Anaphase-promoting comp 99.8 3.3E-17 1.1E-21 144.4 17.7 225 25-257 340-575 (597)
7 1w3b_A UDP-N-acetylglucosamine 99.4 1.4E-11 4.7E-16 102.8 19.6 222 27-256 104-363 (388)
8 1w3b_A UDP-N-acetylglucosamine 99.4 1.2E-11 4.2E-16 103.1 18.1 174 63-246 211-387 (388)
9 2y4t_A DNAJ homolog subfamily 99.4 1.2E-11 4.2E-16 104.8 16.3 216 29-255 65-318 (450)
10 3mkr_A Coatomer subunit epsilo 99.4 1.1E-10 3.8E-15 94.1 19.8 182 63-256 73-259 (291)
11 2ho1_A Type 4 fimbrial biogene 99.4 2.4E-10 8.2E-15 89.3 20.5 186 63-256 45-233 (252)
12 2y4t_A DNAJ homolog subfamily 99.3 2.1E-11 7.3E-16 103.4 15.3 223 25-257 95-354 (450)
13 2vq2_A PILW, putative fimbrial 99.3 6.1E-10 2.1E-14 85.0 21.0 187 63-256 16-206 (225)
14 2q7f_A YRRB protein; TPR, prot 99.3 2E-10 6.7E-15 89.0 18.1 185 63-256 31-217 (243)
15 2pl2_A Hypothetical conserved 99.3 3.4E-10 1.2E-14 87.1 18.3 185 63-257 13-210 (217)
16 1fch_A Peroxisomal targeting s 99.3 1.1E-10 3.6E-15 96.4 14.4 220 31-257 71-355 (368)
17 3hym_B Cell division cycle pro 99.3 3.3E-10 1.1E-14 91.7 16.7 187 63-257 98-295 (330)
18 3hym_B Cell division cycle pro 99.3 4.5E-10 1.5E-14 90.9 17.3 224 26-257 24-261 (330)
19 4eqf_A PEX5-related protein; a 99.3 6.9E-11 2.4E-15 97.7 12.6 186 63-256 73-305 (365)
20 3cv0_A Peroxisome targeting si 99.2 8.8E-11 3E-15 95.0 12.3 153 97-257 148-311 (327)
21 1fch_A Peroxisomal targeting s 99.2 2.5E-10 8.6E-15 94.1 15.0 186 63-256 72-309 (368)
22 3uq3_A Heat shock protein STI1 99.2 9.6E-10 3.3E-14 85.7 17.2 188 63-257 13-232 (258)
23 4eqf_A PEX5-related protein; a 99.2 6.3E-10 2.2E-14 91.8 16.8 163 90-257 68-272 (365)
24 3mkr_A Coatomer subunit epsilo 99.2 5.2E-10 1.8E-14 90.1 15.7 177 63-257 42-225 (291)
25 1b89_A Protein (clathrin heavy 99.2 3.6E-11 1.2E-15 101.0 7.8 197 26-256 34-231 (449)
26 2q7f_A YRRB protein; TPR, prot 99.2 1.5E-09 5.1E-14 84.0 16.3 197 22-226 21-222 (243)
27 2ho1_A Type 4 fimbrial biogene 99.2 2.6E-09 8.8E-14 83.3 17.3 198 32-238 45-248 (252)
28 3cv0_A Peroxisome targeting si 99.2 1.5E-08 5E-13 81.8 21.8 184 63-256 63-264 (327)
29 1b89_A Protein (clathrin heavy 99.1 3.1E-11 1.1E-15 101.3 5.3 183 38-255 17-200 (449)
30 1ouv_A Conserved hypothetical 99.1 2.8E-08 9.5E-13 78.7 22.2 182 63-257 46-247 (273)
31 2vq2_A PILW, putative fimbrial 99.1 1.3E-08 4.5E-13 77.5 19.4 157 92-256 13-171 (225)
32 3ieg_A DNAJ homolog subfamily 99.1 1.6E-08 5.4E-13 82.5 20.1 184 63-256 11-212 (359)
33 3as5_A MAMA; tetratricopeptide 99.1 1.1E-08 3.6E-13 75.4 16.8 151 96-255 17-167 (186)
34 2gw1_A Mitochondrial precursor 99.1 5.9E-10 2E-14 95.8 10.1 226 24-257 237-474 (514)
35 1ouv_A Conserved hypothetical 99.1 1.1E-07 3.7E-12 75.2 22.1 178 63-257 14-211 (273)
36 1xnf_A Lipoprotein NLPI; TPR, 99.0 3.3E-08 1.1E-12 77.8 18.4 183 65-256 15-239 (275)
37 2gw1_A Mitochondrial precursor 99.0 3.9E-09 1.3E-13 90.7 13.9 180 67-256 201-396 (514)
38 3ieg_A DNAJ homolog subfamily 99.0 8.9E-08 3E-12 78.0 21.0 221 27-257 74-331 (359)
39 2pl2_A Hypothetical conserved 99.0 6.4E-08 2.2E-12 74.2 18.9 160 92-257 10-176 (217)
40 3fp2_A TPR repeat-containing p 99.0 6.6E-09 2.3E-13 89.9 14.6 218 32-257 251-487 (537)
41 3nf1_A KLC 1, kinesin light ch 99.0 5.4E-09 1.9E-13 83.7 13.0 190 63-257 35-303 (311)
42 3vtx_A MAMA; tetratricopeptide 99.0 1.2E-07 3.9E-12 70.4 18.9 155 63-225 13-169 (184)
43 3as5_A MAMA; tetratricopeptide 99.0 1E-07 3.5E-12 70.0 17.9 156 63-226 16-173 (186)
44 1xnf_A Lipoprotein NLPI; TPR, 99.0 1.4E-08 4.8E-13 79.9 14.0 182 63-253 51-267 (275)
45 2ond_A Cleavage stimulation fa 99.0 1.7E-07 6E-12 75.7 20.3 176 72-256 81-265 (308)
46 3uq3_A Heat shock protein STI1 99.0 2.6E-08 8.9E-13 77.5 14.8 158 92-257 10-198 (258)
47 4abn_A Tetratricopeptide repea 98.9 9.4E-08 3.2E-12 82.2 18.8 188 63-257 110-317 (474)
48 3u4t_A TPR repeat-containing p 98.9 1.5E-08 5.2E-13 79.8 12.8 185 63-257 45-246 (272)
49 3u4t_A TPR repeat-containing p 98.9 1.7E-07 5.7E-12 73.7 18.8 185 63-256 11-203 (272)
50 3edt_B KLC 2, kinesin light ch 98.9 4.4E-09 1.5E-13 82.9 9.4 189 64-257 10-277 (283)
51 3fp2_A TPR repeat-containing p 98.9 7.4E-08 2.5E-12 83.3 17.8 179 69-257 216-403 (537)
52 2fo7_A Synthetic consensus TPR 98.9 1.9E-07 6.5E-12 64.6 16.2 127 92-226 6-132 (136)
53 3vtx_A MAMA; tetratricopeptide 98.9 6.7E-07 2.3E-11 66.2 18.7 157 92-257 10-166 (184)
54 2fo7_A Synthetic consensus TPR 98.8 2.2E-07 7.6E-12 64.3 15.0 126 123-256 2-127 (136)
55 4abn_A Tetratricopeptide repea 98.8 4.7E-07 1.6E-11 77.8 18.7 182 71-257 84-283 (474)
56 2ond_A Cleavage stimulation fa 98.8 2.7E-06 9.3E-11 68.6 21.3 176 72-257 33-228 (308)
57 4gyw_A UDP-N-acetylglucosamine 98.7 1.3E-06 4.5E-11 78.7 19.3 152 93-255 15-168 (723)
58 3nf1_A KLC 1, kinesin light ch 98.7 2.4E-07 8E-12 74.0 13.0 161 92-257 32-220 (311)
59 4i17_A Hypothetical protein; T 98.7 1.4E-06 4.8E-11 66.8 16.8 85 64-150 16-104 (228)
60 2ooe_A Cleavage stimulation fa 98.6 4.2E-06 1.4E-10 72.7 19.8 179 68-256 292-487 (530)
61 3edt_B KLC 2, kinesin light ch 98.6 4E-07 1.4E-11 71.5 12.2 158 63-225 51-280 (283)
62 3mv2_B Coatomer subunit epsilo 98.6 2.1E-06 7.2E-11 69.1 15.6 174 74-255 85-276 (310)
63 2ooe_A Cleavage stimulation fa 98.6 9.9E-06 3.4E-10 70.3 21.3 176 72-257 255-450 (530)
64 2h6f_A Protein farnesyltransfe 98.6 9.6E-07 3.3E-11 73.7 12.6 214 37-256 110-342 (382)
65 2xm6_A Protein corresponding t 98.5 4.2E-05 1.4E-09 65.7 23.2 149 68-226 56-216 (490)
66 2xm6_A Protein corresponding t 98.5 4.1E-05 1.4E-09 65.8 22.9 176 68-257 236-428 (490)
67 4i17_A Hypothetical protein; T 98.5 1.8E-05 6.1E-10 60.5 18.5 147 93-248 13-169 (228)
68 4gyw_A UDP-N-acetylglucosamine 98.5 5.6E-06 1.9E-10 74.6 17.5 151 63-225 17-173 (723)
69 1qqe_A Vesicular transport pro 98.5 3.5E-06 1.2E-10 67.4 14.7 171 70-257 32-224 (292)
70 4a1s_A PINS, partner of inscut 98.5 9.6E-07 3.3E-11 73.7 10.9 189 63-256 56-287 (411)
71 2h6f_A Protein farnesyltransfe 98.5 9.9E-06 3.4E-10 67.6 16.6 182 63-255 105-299 (382)
72 1qqe_A Vesicular transport pro 98.5 7.2E-06 2.5E-10 65.6 15.2 188 63-257 45-265 (292)
73 1hh8_A P67PHOX, NCF-2, neutrop 98.4 4.2E-05 1.4E-09 57.6 17.4 125 93-227 12-151 (213)
74 3qky_A Outer membrane assembly 98.4 1.8E-05 6E-10 62.0 15.6 160 93-256 21-219 (261)
75 2vsy_A XCC0866; transferase, g 98.4 1.2E-05 4.1E-10 70.5 16.0 152 68-227 2-158 (568)
76 2vsy_A XCC0866; transferase, g 98.4 2.3E-05 7.7E-10 68.7 17.4 147 41-191 6-157 (568)
77 3rjv_A Putative SEL1 repeat pr 98.4 6E-05 2E-09 57.3 17.6 174 73-256 4-192 (212)
78 3ro2_A PINS homolog, G-protein 98.3 6.2E-06 2.1E-10 66.1 12.1 189 63-256 13-247 (338)
79 1na0_A Designed protein CTPR3; 98.3 4.1E-05 1.4E-09 51.8 14.7 98 122-226 9-106 (125)
80 2r5s_A Uncharacterized protein 98.3 6.4E-06 2.2E-10 60.6 11.1 155 92-256 11-168 (176)
81 3mv2_B Coatomer subunit epsilo 98.3 2.3E-05 7.7E-10 63.1 14.9 141 106-256 85-235 (310)
82 2yhc_A BAMD, UPF0169 lipoprote 98.3 4.7E-05 1.6E-09 58.3 16.2 159 94-256 11-208 (225)
83 3ulq_A Response regulator aspa 98.3 2.7E-06 9.2E-11 70.6 9.7 187 63-257 151-364 (383)
84 3sf4_A G-protein-signaling mod 98.3 5.5E-06 1.9E-10 68.6 11.6 87 63-149 17-114 (406)
85 2ifu_A Gamma-SNAP; membrane fu 98.3 1.5E-05 5.1E-10 64.3 13.5 156 63-224 44-222 (307)
86 3ulq_A Response regulator aspa 98.3 1.4E-05 5E-10 66.2 13.1 189 63-256 111-330 (383)
87 3qky_A Outer membrane assembly 98.3 3.7E-05 1.3E-09 60.1 14.8 156 63-226 23-224 (261)
88 3u3w_A Transcriptional activat 98.3 2.2E-05 7.4E-10 62.7 13.5 160 93-257 81-262 (293)
89 3qou_A Protein YBBN; thioredox 98.2 6.7E-05 2.3E-09 59.8 15.9 173 69-256 100-279 (287)
90 3urz_A Uncharacterized protein 98.2 8.1E-05 2.8E-09 56.3 15.7 164 63-239 12-197 (208)
91 4a1s_A PINS, partner of inscut 98.2 2.9E-06 1E-10 70.7 8.0 220 32-256 56-327 (411)
92 3sf4_A G-protein-signaling mod 98.2 1.9E-06 6.5E-11 71.4 6.8 190 63-257 95-332 (406)
93 3u3w_A Transcriptional activat 98.2 0.00019 6.5E-09 57.2 18.1 158 63-225 83-265 (293)
94 3ro2_A PINS homolog, G-protein 98.2 5.9E-06 2E-10 66.2 9.3 190 63-257 91-328 (338)
95 3q15_A PSP28, response regulat 98.2 2.9E-05 1E-09 64.3 13.6 186 63-257 149-361 (378)
96 2yhc_A BAMD, UPF0169 lipoprote 98.2 0.00017 5.9E-09 55.1 17.1 156 63-227 12-214 (225)
97 2r5s_A Uncharacterized protein 98.2 1.5E-05 5E-10 58.6 10.5 155 63-225 14-172 (176)
98 3q15_A PSP28, response regulat 98.2 7.3E-05 2.5E-09 61.8 15.9 188 63-255 109-326 (378)
99 2pzi_A Probable serine/threoni 98.2 3.9E-05 1.3E-09 68.8 15.1 171 66-247 402-583 (681)
100 1a17_A Serine/threonine protei 98.2 0.00016 5.3E-09 51.8 15.5 124 93-224 19-144 (166)
101 2qfc_A PLCR protein; TPR, HTH, 98.2 0.00016 5.5E-09 57.6 16.9 160 92-256 80-261 (293)
102 1na0_A Designed protein CTPR3; 98.2 0.00016 5.5E-09 48.8 14.6 107 92-207 14-121 (125)
103 2vyi_A SGTA protein; chaperone 98.2 0.00014 4.9E-09 49.5 14.4 118 122-247 12-129 (131)
104 1a17_A Serine/threonine protei 98.2 7E-05 2.4E-09 53.7 13.1 127 122-256 13-141 (166)
105 1hh8_A P67PHOX, NCF-2, neutrop 98.1 8.5E-05 2.9E-09 55.8 14.1 124 124-257 8-146 (213)
106 1xi4_A Clathrin heavy chain; a 98.1 0.00016 5.5E-09 68.6 18.1 169 67-256 1088-1304(1630)
107 3gw4_A Uncharacterized protein 98.1 1.8E-05 6.3E-10 58.9 10.1 153 67-226 4-176 (203)
108 3qou_A Protein YBBN; thioredox 98.1 6.1E-05 2.1E-09 60.1 13.3 152 63-224 125-282 (287)
109 3urz_A Uncharacterized protein 98.1 6.1E-05 2.1E-09 57.0 12.6 150 94-257 11-182 (208)
110 1hz4_A MALT regulatory protein 98.1 8.7E-05 3E-09 61.0 14.5 189 63-256 101-317 (373)
111 2pzi_A Probable serine/threoni 98.1 5.4E-05 1.8E-09 68.0 13.7 149 98-257 402-559 (681)
112 2lni_A Stress-induced-phosphop 98.1 0.00017 6E-09 49.4 13.5 99 121-226 15-113 (133)
113 1hz4_A MALT regulatory protein 98.1 0.00025 8.5E-09 58.3 16.4 188 64-256 23-239 (373)
114 3gw4_A Uncharacterized protein 98.1 0.00011 3.7E-09 54.6 13.0 154 97-256 2-171 (203)
115 2ifu_A Gamma-SNAP; membrane fu 98.1 7.5E-05 2.6E-09 60.1 12.8 172 68-257 29-220 (307)
116 1xi4_A Clathrin heavy chain; a 98.0 0.00029 9.9E-09 67.0 17.5 163 63-257 1057-1220(1630)
117 2qfc_A PLCR protein; TPR, HTH, 98.0 0.00064 2.2E-08 54.1 17.3 157 63-224 83-264 (293)
118 3rjv_A Putative SEL1 repeat pr 98.0 0.00049 1.7E-08 52.1 15.8 160 63-229 26-200 (212)
119 2e2e_A Formate-dependent nitri 98.0 0.00017 5.9E-09 52.6 12.9 121 64-191 19-144 (177)
120 2vyi_A SGTA protein; chaperone 98.0 0.0004 1.4E-08 47.1 13.5 112 93-212 18-129 (131)
121 4ga2_A E3 SUMO-protein ligase 98.0 7.2E-05 2.5E-09 53.5 9.8 100 65-169 7-111 (150)
122 4gco_A Protein STI-1; structur 98.0 0.00067 2.3E-08 46.8 14.5 95 124-225 15-109 (126)
123 1p5q_A FKBP52, FK506-binding p 97.9 0.00039 1.3E-08 56.7 14.9 124 93-224 153-292 (336)
124 4ga2_A E3 SUMO-protein ligase 97.9 0.00014 4.6E-09 52.0 10.8 139 97-247 7-149 (150)
125 2e2e_A Formate-dependent nitri 97.9 0.00027 9.4E-09 51.5 12.7 121 98-226 21-144 (177)
126 1elw_A TPR1-domain of HOP; HOP 97.9 0.0015 5.2E-08 43.3 15.4 98 122-226 4-101 (118)
127 2lni_A Stress-induced-phosphop 97.9 0.00053 1.8E-08 46.8 13.2 110 93-211 22-132 (133)
128 4g1t_A Interferon-induced prot 97.9 0.00036 1.2E-08 59.1 14.7 183 67-257 225-455 (472)
129 4b4t_Q 26S proteasome regulato 97.9 0.0016 5.5E-08 54.4 18.0 187 64-255 13-239 (434)
130 4gco_A Protein STI-1; structur 97.9 0.0005 1.7E-08 47.5 12.5 96 93-197 19-114 (126)
131 1elr_A TPR2A-domain of HOP; HO 97.9 0.0004 1.4E-08 47.2 11.9 108 123-238 5-118 (131)
132 3gyz_A Chaperone protein IPGC; 97.8 0.00059 2E-08 48.9 12.7 100 123-232 37-137 (151)
133 2kck_A TPR repeat; tetratricop 97.8 0.00046 1.6E-08 45.5 11.2 97 123-226 7-106 (112)
134 3q49_B STIP1 homology and U bo 97.8 0.0014 4.8E-08 45.2 14.0 98 121-225 8-105 (137)
135 2dba_A Smooth muscle cell asso 97.8 0.003 1E-07 43.8 15.9 96 122-225 28-127 (148)
136 3upv_A Heat shock protein STI1 97.8 0.0017 5.7E-08 44.3 14.0 95 124-225 6-100 (126)
137 2vgx_A Chaperone SYCD; alterna 97.7 0.0015 5E-08 46.5 13.7 95 124-225 23-117 (148)
138 4b4t_Q 26S proteasome regulato 97.7 0.0014 4.8E-08 54.7 15.6 160 94-257 11-200 (434)
139 1p5q_A FKBP52, FK506-binding p 97.7 0.00087 3E-08 54.6 13.9 126 121-253 146-285 (336)
140 3sz7_A HSC70 cochaperone (SGT) 97.7 0.0014 4.7E-08 47.1 13.5 91 93-190 17-107 (164)
141 2xcb_A PCRH, regulatory protei 97.7 0.0013 4.3E-08 46.2 13.0 89 129-224 25-113 (142)
142 2fbn_A 70 kDa peptidylprolyl i 97.7 0.0012 4.2E-08 49.0 13.1 127 93-227 44-187 (198)
143 4e6h_A MRNA 3'-END-processing 97.7 0.0011 3.9E-08 59.2 14.6 183 65-256 353-565 (679)
144 3e4b_A ALGK; tetratricopeptide 97.7 0.0043 1.5E-07 52.7 17.8 175 69-257 88-312 (452)
145 2kck_A TPR repeat; tetratricop 97.7 0.0017 5.7E-08 42.7 12.3 92 93-191 12-106 (112)
146 4e6h_A MRNA 3'-END-processing 97.7 0.0014 4.9E-08 58.6 15.0 177 73-257 327-529 (679)
147 1elw_A TPR1-domain of HOP; HOP 97.6 0.0048 1.6E-07 40.7 14.6 92 93-191 10-101 (118)
148 4g1t_A Interferon-induced prot 97.6 0.0012 4.2E-08 55.8 13.9 154 100-256 226-396 (472)
149 3gyz_A Chaperone protein IPGC; 97.6 0.0029 1E-07 45.2 13.6 97 93-198 42-138 (151)
150 3upv_A Heat shock protein STI1 97.6 0.0034 1.2E-07 42.7 13.4 91 93-190 10-100 (126)
151 3ro3_A PINS homolog, G-protein 97.6 0.00065 2.2E-08 47.9 10.0 128 93-225 15-157 (164)
152 2fbn_A 70 kDa peptidylprolyl i 97.6 0.0045 1.5E-07 45.9 14.8 151 94-252 11-176 (198)
153 1elr_A TPR2A-domain of HOP; HO 97.6 0.0011 3.7E-08 44.9 10.6 105 93-205 10-120 (131)
154 4gcn_A Protein STI-1; structur 97.6 0.002 6.8E-08 44.4 11.8 106 124-237 10-121 (127)
155 3e4b_A ALGK; tetratricopeptide 97.5 0.0083 2.8E-07 50.9 17.8 154 63-228 184-353 (452)
156 3dra_A Protein farnesyltransfe 97.5 0.0063 2.1E-07 48.9 15.1 211 43-256 52-282 (306)
157 2xcb_A PCRH, regulatory protei 97.5 0.0033 1.1E-07 44.0 12.0 91 93-190 24-114 (142)
158 2dba_A Smooth muscle cell asso 97.5 0.0076 2.6E-07 41.7 13.9 90 93-190 34-127 (148)
159 4f3v_A ESX-1 secretion system 97.4 0.0012 4E-08 52.4 10.4 121 128-256 108-232 (282)
160 3sz7_A HSC70 cochaperone (SGT) 97.4 0.0038 1.3E-07 44.7 12.5 86 64-150 20-107 (164)
161 4f3v_A ESX-1 secretion system 97.4 0.0025 8.7E-08 50.5 12.0 133 93-235 108-244 (282)
162 2vgx_A Chaperone SYCD; alterna 97.4 0.0036 1.2E-07 44.4 12.0 91 93-190 27-117 (148)
163 3ro3_A PINS homolog, G-protein 97.4 0.00062 2.1E-08 48.0 7.9 131 122-257 9-154 (164)
164 3k9i_A BH0479 protein; putativ 97.4 0.00064 2.2E-08 46.0 7.6 84 136-225 4-89 (117)
165 1hxi_A PEX5, peroxisome target 97.4 0.0067 2.3E-07 41.3 12.8 91 93-190 23-113 (121)
166 2c2l_A CHIP, carboxy terminus 97.4 0.0041 1.4E-07 49.2 13.2 178 63-256 12-194 (281)
167 3q49_B STIP1 homology and U bo 97.4 0.0038 1.3E-07 42.9 11.6 97 154-257 6-102 (137)
168 1wao_1 Serine/threonine protei 97.4 0.0018 6.1E-08 55.5 11.7 117 96-222 15-135 (477)
169 2xev_A YBGF; tetratricopeptide 97.3 0.014 4.9E-07 39.4 13.9 88 95-190 10-104 (129)
170 1wao_1 Serine/threonine protei 97.3 0.0013 4.3E-08 56.5 9.8 119 63-188 14-136 (477)
171 3n71_A Histone lysine methyltr 97.3 0.0021 7.2E-08 55.2 11.1 126 96-226 318-464 (490)
172 1kt0_A FKBP51, 51 kDa FK506-bi 97.3 0.0046 1.6E-07 52.6 13.1 125 93-225 274-414 (457)
173 1hxi_A PEX5, peroxisome target 97.3 0.0052 1.8E-07 41.8 11.0 95 124-226 19-114 (121)
174 2xev_A YBGF; tetratricopeptide 97.2 0.012 4E-07 39.9 12.6 97 127-233 7-110 (129)
175 2c2l_A CHIP, carboxy terminus 97.2 0.015 5E-07 45.9 14.4 90 93-190 10-100 (281)
176 3k9i_A BH0479 protein; putativ 97.2 0.00095 3.2E-08 45.1 6.5 82 68-150 3-89 (117)
177 4gcn_A Protein STI-1; structur 97.2 0.0074 2.5E-07 41.4 11.1 101 93-201 14-120 (127)
178 1kt0_A FKBP51, 51 kDa FK506-bi 97.1 0.012 4.1E-07 50.0 13.6 124 122-253 268-406 (457)
179 1ihg_A Cyclophilin 40; ppiase 97.1 0.015 5.2E-07 48.0 13.6 125 123-254 224-363 (370)
180 1klx_A Cysteine rich protein B 97.0 0.039 1.3E-06 38.4 13.7 113 70-191 10-126 (138)
181 3rkv_A Putative peptidylprolyl 97.0 0.018 6.3E-07 40.9 12.0 62 158-225 64-125 (162)
182 2l6j_A TPR repeat-containing p 96.9 0.0071 2.4E-07 39.7 8.8 91 157-255 4-101 (111)
183 1ihg_A Cyclophilin 40; ppiase 96.9 0.014 4.6E-07 48.3 12.1 118 93-218 229-362 (370)
184 3rkv_A Putative peptidylprolyl 96.9 0.047 1.6E-06 38.7 13.3 98 93-198 17-131 (162)
185 2if4_A ATFKBP42; FKBP-like, al 96.8 0.0053 1.8E-07 50.0 8.5 124 93-226 185-328 (338)
186 2uy1_A Cleavage stimulation fa 96.7 0.025 8.5E-07 48.6 12.4 120 123-256 287-408 (493)
187 1klx_A Cysteine rich protein B 96.7 0.082 2.8E-06 36.7 14.8 116 101-228 9-128 (138)
188 3n71_A Histone lysine methyltr 96.7 0.038 1.3E-06 47.4 13.2 121 65-190 319-463 (490)
189 2kat_A Uncharacterized protein 96.5 0.043 1.5E-06 36.4 10.3 77 106-189 4-80 (115)
190 2if4_A ATFKBP42; FKBP-like, al 96.4 0.013 4.4E-07 47.7 8.4 125 122-256 179-323 (338)
191 2l6j_A TPR repeat-containing p 96.2 0.029 1E-06 36.6 8.1 54 96-150 13-66 (111)
192 1na3_A Designed protein CTPR2; 96.2 0.092 3.1E-06 32.6 10.1 73 93-167 15-87 (91)
193 2hr2_A Hypothetical protein; a 96.2 0.22 7.4E-06 35.7 12.9 107 93-204 17-149 (159)
194 2kat_A Uncharacterized protein 96.0 0.15 5.1E-06 33.6 10.9 77 73-150 3-81 (115)
195 3qwp_A SET and MYND domain-con 95.9 0.098 3.4E-06 44.1 11.4 93 128-225 293-399 (429)
196 1na3_A Designed protein CTPR2; 95.8 0.16 5.4E-06 31.5 10.6 62 123-190 10-71 (91)
197 2hr2_A Hypothetical protein; a 95.8 0.32 1.1E-05 34.8 12.7 112 124-240 13-150 (159)
198 3ma5_A Tetratricopeptide repea 95.8 0.062 2.1E-06 34.8 8.0 64 156-225 6-69 (100)
199 3qww_A SET and MYND domain-con 95.7 0.12 4E-06 43.6 11.1 86 135-225 311-410 (433)
200 3qwp_A SET and MYND domain-con 95.6 0.078 2.7E-06 44.7 9.7 92 93-189 293-398 (429)
201 3mkq_A Coatomer beta'-subunit; 95.5 0.17 5.8E-06 45.7 12.4 18 93-110 635-652 (814)
202 3ma5_A Tetratricopeptide repea 95.3 0.15 5.1E-06 32.9 8.5 56 93-149 13-68 (100)
203 3mkq_A Coatomer beta'-subunit; 95.3 0.56 1.9E-05 42.3 15.0 136 93-253 658-804 (814)
204 3qww_A SET and MYND domain-con 95.2 0.18 6.2E-06 42.5 10.7 86 99-189 310-409 (433)
205 1dce_A Protein (RAB geranylger 95.1 1.2 4.1E-05 38.9 15.8 173 70-250 44-244 (567)
206 2uy1_A Cleavage stimulation fa 94.8 1 3.6E-05 38.5 14.6 118 94-225 293-412 (493)
207 1wy6_A Hypothetical protein ST 94.5 0.77 2.6E-05 32.0 11.5 130 99-255 19-148 (172)
208 1zu2_A Mitochondrial import re 94.4 0.31 1.1E-05 34.8 8.6 28 212-241 106-133 (158)
209 1pc2_A Mitochondria fission pr 94.4 0.63 2.1E-05 33.0 10.1 82 139-225 15-99 (152)
210 3q7a_A Farnesyltransferase alp 94.4 1.7 5.9E-05 35.4 16.2 207 45-256 75-326 (349)
211 1zu2_A Mitochondrial import re 94.0 0.4 1.4E-05 34.3 8.6 119 98-226 13-147 (158)
212 3ly7_A Transcriptional activat 94.0 1.1 3.9E-05 36.7 12.2 61 194-256 274-334 (372)
213 2kc7_A BFR218_protein; tetratr 93.6 0.82 2.8E-05 28.8 9.5 59 93-152 6-65 (99)
214 2kc7_A BFR218_protein; tetratr 93.5 0.84 2.9E-05 28.7 9.1 53 131-190 9-63 (99)
215 1v54_E Cytochrome C oxidase po 93.4 1 3.4E-05 29.4 8.8 45 140-189 28-72 (109)
216 1dce_A Protein (RAB geranylger 93.1 4.1 0.00014 35.5 15.8 141 96-244 37-190 (567)
217 1v54_E Cytochrome C oxidase po 92.7 0.73 2.5E-05 30.1 7.2 65 102-167 25-89 (109)
218 3dra_A Protein farnesyltransfe 92.7 3.1 0.00011 33.1 19.8 166 71-247 49-235 (306)
219 2y69_E Cytochrome C oxidase su 92.2 1.6 5.5E-05 30.1 8.8 60 140-205 71-130 (152)
220 2ff4_A Probable regulatory pro 92.1 0.7 2.4E-05 38.3 8.5 54 94-148 178-231 (388)
221 2v5f_A Prolyl 4-hydroxylase su 92.0 0.94 3.2E-05 29.4 7.6 60 92-151 10-75 (104)
222 1nzn_A CGI-135 protein, fissio 91.6 2.3 7.8E-05 29.0 9.4 87 136-226 15-103 (126)
223 3dss_A Geranylgeranyl transfer 91.0 5.3 0.00018 32.2 17.7 157 71-232 90-271 (331)
224 2y69_E Cytochrome C oxidase su 90.2 2.2 7.7E-05 29.4 7.9 65 102-167 68-132 (152)
225 4h7y_A Dual specificity protei 89.8 4 0.00014 28.9 10.5 116 121-241 12-137 (161)
226 3mkq_B Coatomer subunit alpha; 89.5 4.6 0.00016 29.3 11.6 134 87-255 5-138 (177)
227 1wy6_A Hypothetical protein ST 89.5 4 0.00014 28.5 14.3 138 68-229 20-157 (172)
228 1pc2_A Mitochondria fission pr 89.5 4.2 0.00014 28.7 11.0 56 94-150 39-99 (152)
229 2ff4_A Probable regulatory pro 89.1 2.3 8E-05 35.1 9.1 69 125-199 174-247 (388)
230 3ly7_A Transcriptional activat 89.0 3 0.0001 34.2 9.3 73 154-235 274-346 (372)
231 1k1a_A B-cell lymphoma 3-encod 88.8 0.39 1.3E-05 36.2 3.9 80 63-146 14-100 (241)
232 3mkq_B Coatomer subunit alpha; 87.7 6.3 0.00022 28.6 14.5 130 63-224 13-142 (177)
233 4b4t_R RPN7, 26S proteasome re 87.2 5.3 0.00018 33.4 10.2 119 69-190 108-236 (429)
234 2v5f_A Prolyl 4-hydroxylase su 87.0 4.4 0.00015 26.0 8.9 48 178-225 21-74 (104)
235 3u64_A Protein TP_0956; tetrat 86.1 11 0.00037 29.8 10.7 115 122-240 154-285 (301)
236 3q7a_A Farnesyltransferase alp 85.0 14 0.00048 30.0 19.7 174 67-246 66-256 (349)
237 2uwj_G Type III export protein 84.5 6.4 0.00022 25.6 7.4 85 69-161 20-106 (115)
238 3bee_A Putative YFRE protein; 84.4 5.9 0.0002 25.1 10.6 68 155-226 4-72 (93)
239 2p58_C Putative type III secre 84.1 6.7 0.00023 25.5 8.4 85 69-161 21-107 (116)
240 1nzn_A CGI-135 protein, fissio 82.3 9 0.00031 26.0 7.7 81 103-190 17-102 (126)
241 4b4t_P 26S proteasome regulato 82.0 13 0.00043 31.3 10.2 153 69-226 30-206 (445)
242 2fe3_A Peroxide operon regulat 81.9 6.4 0.00022 27.4 7.2 63 77-139 9-73 (145)
243 2xig_A Ferric uptake regulatio 81.0 5.9 0.0002 27.8 6.7 64 76-139 13-78 (150)
244 2r9g_A AAA ATPase, central reg 80.1 16 0.00054 27.0 9.9 69 125-194 14-85 (204)
245 4h7y_A Dual specificity protei 79.4 14 0.00048 26.1 9.0 106 93-206 19-137 (161)
246 3u64_A Protein TP_0956; tetrat 79.3 21 0.00073 28.2 11.2 96 104-205 180-285 (301)
247 1k1a_A B-cell lymphoma 3-encod 79.3 2.5 8.5E-05 31.6 4.7 61 92-156 11-73 (241)
248 2uwj_G Type III export protein 79.0 11 0.00037 24.5 7.1 30 132-165 49-78 (115)
249 1mzb_A Ferric uptake regulatio 78.7 7 0.00024 26.8 6.4 60 80-139 8-70 (136)
250 3dss_A Geranylgeranyl transfer 78.7 24 0.00082 28.3 19.2 161 68-238 42-233 (331)
251 4gns_B Protein CSD3, chitin bi 78.3 19 0.00065 32.6 10.5 124 93-223 254-397 (754)
252 3bge_A Predicted ATPase; struc 78.0 18 0.00062 26.6 8.7 68 126-193 8-78 (201)
253 3eyy_A Putative iron uptake re 77.0 6.1 0.00021 27.5 5.7 61 78-139 7-69 (145)
254 3o48_A Mitochondria fission 1 76.6 16 0.00054 25.1 9.6 75 153-231 36-110 (134)
255 3bee_A Putative YFRE protein; 75.2 13 0.00044 23.4 10.5 47 138-190 25-71 (93)
256 3esl_A Checkpoint serine/threo 75.0 22 0.00077 26.3 8.4 54 102-155 94-148 (202)
257 2w57_A Ferric uptake regulatio 74.8 7.9 0.00027 27.1 5.9 62 78-139 5-69 (150)
258 4ets_A Ferric uptake regulatio 74.2 9.2 0.00031 27.2 6.2 70 71-140 13-87 (162)
259 3kea_A K1L; tropism, ANK repea 73.9 6 0.00021 30.7 5.6 26 205-234 200-225 (285)
260 2rfa_A Transient receptor pote 72.9 5.7 0.00019 29.4 5.1 72 184-256 136-218 (232)
261 2fu4_A Ferric uptake regulatio 71.8 9.3 0.00032 23.3 5.1 64 186-250 6-70 (83)
262 4b4t_R RPN7, 26S proteasome re 70.5 45 0.0015 27.7 11.7 97 123-226 132-237 (429)
263 3lpz_A GET4 (YOR164C homolog); 70.1 41 0.0014 27.1 17.9 133 92-247 40-182 (336)
264 3ctd_A Putative ATPase, AAA fa 69.5 32 0.0011 25.6 9.4 71 124-194 34-107 (213)
265 2p58_C Putative type III secre 69.2 21 0.00071 23.3 8.3 76 103-191 23-98 (116)
266 4gns_B Protein CSD3, chitin bi 69.1 67 0.0023 29.1 12.6 123 125-253 251-392 (754)
267 2fu4_A Ferric uptake regulatio 68.7 17 0.00058 22.1 5.9 58 80-137 7-67 (83)
268 2ion_A PDCD4, programmed cell 68.1 28 0.00096 24.4 9.0 64 92-156 14-79 (152)
269 4a1g_A Mitotic checkpoint seri 68.0 25 0.00084 24.7 7.0 55 179-233 82-137 (152)
270 1y8m_A FIS1; mitochondria, unk 67.4 28 0.00097 24.1 11.8 73 154-231 36-109 (144)
271 4fhn_B Nucleoporin NUP120; pro 67.3 77 0.0026 30.2 12.4 146 92-250 817-989 (1139)
272 2nsz_A Programmed cell death p 66.7 27 0.00092 23.6 9.9 64 92-156 12-77 (129)
273 3esl_A Checkpoint serine/threo 65.7 23 0.00078 26.2 6.7 55 178-232 95-150 (202)
274 3hra_A Ankyrin repeat family p 64.9 3.1 0.00011 30.0 2.0 175 64-256 11-199 (201)
275 2xig_A Ferric uptake regulatio 64.7 17 0.00059 25.3 5.8 67 184-251 14-80 (150)
276 3ljn_A Hypothetical protein; a 64.5 19 0.00066 28.7 7.0 29 93-121 87-115 (364)
277 2wvi_A Mitotic checkpoint seri 64.3 30 0.001 24.6 7.0 54 180-233 78-132 (164)
278 3eyy_A Putative iron uptake re 63.5 11 0.00037 26.2 4.5 66 184-251 6-71 (145)
279 3mwm_A ZUR, putative metal upt 63.5 6.6 0.00023 27.1 3.4 59 81-139 5-65 (139)
280 3twr_A Tankyrase-2; ankyrin re 61.8 16 0.00056 25.1 5.4 121 92-231 10-135 (165)
281 3aji_A 26S proteasome non-ATPa 61.4 9.3 0.00032 28.1 4.2 171 63-256 11-193 (231)
282 2f8y_A Notch homolog 1, transl 61.2 11 0.00037 27.6 4.5 43 63-109 30-77 (223)
283 3eu9_A Huntingtin-interacting 60.9 3 0.0001 30.9 1.3 200 31-256 13-231 (240)
284 2wvi_A Mitotic checkpoint seri 60.9 36 0.0012 24.2 6.8 53 105-157 78-131 (164)
285 1wdy_A 2-5A-dependent ribonucl 60.7 9.8 0.00033 28.9 4.3 13 93-105 8-20 (285)
286 2fe3_A Peroxide operon regulat 60.3 20 0.00067 24.8 5.4 66 185-251 10-75 (145)
287 4b4t_P 26S proteasome regulato 60.1 75 0.0026 26.5 15.8 158 63-225 64-246 (445)
288 4fhn_B Nucleoporin NUP120; pro 58.9 79 0.0027 30.1 10.8 164 59-225 845-1049(1139)
289 4ets_A Ferric uptake regulatio 57.3 13 0.00043 26.4 4.0 64 187-251 23-88 (162)
290 3ygs_P Procaspase 9; apoptosis 55.4 30 0.001 22.0 5.2 62 77-142 26-88 (97)
291 2o03_A Probable zinc uptake re 54.8 12 0.0004 25.4 3.4 49 202-250 15-63 (131)
292 3eu9_A Huntingtin-interacting 54.1 10 0.00034 27.9 3.3 179 29-228 44-238 (240)
293 4aez_C MAD3, mitotic spindle c 53.5 61 0.0021 24.4 7.3 52 104-155 131-183 (223)
294 3txn_A 26S proteasome regulato 53.1 95 0.0032 25.6 10.0 96 92-188 104-207 (394)
295 1mzb_A Ferric uptake regulatio 52.7 19 0.00066 24.5 4.3 64 187-251 8-72 (136)
296 3eiq_C Programmed cell death p 52.3 93 0.0032 25.3 8.8 46 199-245 219-264 (358)
297 3eiq_C Programmed cell death p 52.3 93 0.0032 25.2 8.8 68 92-160 222-291 (358)
298 2aja_A Ankyrin repeat family p 52.1 82 0.0028 25.6 8.7 22 200-221 199-220 (376)
299 2ijq_A Hypothetical protein; s 51.6 47 0.0016 23.5 6.1 68 175-242 45-127 (161)
300 2rfa_A Transient receptor pote 51.5 35 0.0012 24.9 6.0 148 63-226 42-223 (232)
301 4aez_C MAD3, mitotic spindle c 51.4 46 0.0016 25.0 6.3 54 179-232 131-185 (223)
302 2f6m_A Suppressor protein STP2 51.0 25 0.00085 20.7 3.8 51 199-250 4-54 (65)
303 2zu6_B Programmed cell death p 50.8 91 0.0031 24.7 9.5 25 200-224 169-193 (307)
304 2w57_A Ferric uptake regulatio 50.5 20 0.00069 24.9 4.2 66 185-251 5-71 (150)
305 2keb_A DNA polymerase subunit 50.4 48 0.0016 21.3 6.6 56 181-238 28-88 (101)
306 4g8k_A 2-5A-dependent ribonucl 50.3 31 0.0011 27.1 5.8 15 66-80 133-147 (337)
307 1ug3_A EIF4GI, eukaryotic prot 50.1 24 0.00084 28.3 5.1 65 92-157 16-81 (339)
308 3rjo_A Endoplasmic reticulum a 49.7 1.1E+02 0.0037 25.2 15.8 155 93-257 203-369 (419)
309 3txn_A 26S proteasome regulato 49.5 1.1E+02 0.0037 25.2 13.4 157 93-255 25-204 (394)
310 1wty_A Hypothetical protein TT 48.7 55 0.0019 21.6 6.4 13 157-169 53-65 (119)
311 2yru_A Steroid receptor RNA ac 48.1 58 0.002 21.7 8.1 43 184-226 48-90 (118)
312 3mwm_A ZUR, putative metal upt 47.9 11 0.00038 25.9 2.4 51 201-251 17-67 (139)
313 1ug3_A EIF4GI, eukaryotic prot 47.8 95 0.0032 24.8 8.3 65 125-194 14-78 (339)
314 3bu8_A Telomeric repeat-bindin 47.2 87 0.003 23.4 7.9 47 70-116 87-143 (235)
315 2yru_A Steroid receptor RNA ac 46.4 39 0.0013 22.5 4.8 44 108-151 47-90 (118)
316 3v31_A Ankyrin repeat family A 46.3 53 0.0018 22.4 6.0 144 64-225 9-160 (167)
317 3twr_A Tankyrase-2; ankyrin re 46.0 8.1 0.00028 26.8 1.5 114 129-256 12-129 (165)
318 2b7e_A PRE-mRNA processing pro 45.7 12 0.00041 21.6 1.9 32 138-169 2-34 (59)
319 2o03_A Probable zinc uptake re 45.6 29 0.001 23.3 4.3 47 92-138 15-61 (131)
320 1bd8_A P19INK4D CDK4/6 inhibit 45.4 12 0.00043 25.4 2.4 17 96-112 8-24 (156)
321 2wpv_A GET4, UPF0363 protein Y 44.7 1.2E+02 0.004 24.1 18.4 135 71-220 13-157 (312)
322 3b7b_A Euchromatic histone-lys 44.2 16 0.00055 26.9 3.0 66 184-253 159-228 (237)
323 4a1g_A Mitotic checkpoint seri 43.9 80 0.0027 22.1 8.4 52 104-155 82-134 (152)
324 1zl8_A LIN-7; heterodimer, alp 43.9 40 0.0014 18.6 4.5 44 69-112 7-51 (53)
325 1wdy_A 2-5A-dependent ribonucl 43.8 44 0.0015 25.1 5.6 23 134-156 191-213 (285)
326 3kea_A K1L; tropism, ANK repea 43.7 9.2 0.00032 29.6 1.6 171 63-256 36-216 (285)
327 3jxi_A Vanilloid receptor-rela 43.6 11 0.00037 28.5 2.0 150 67-226 58-251 (260)
328 3utm_A Tankyrase-1; tankyrase, 43.1 1.1E+02 0.0039 23.6 9.4 69 183-255 228-300 (351)
329 2zu6_B Programmed cell death p 42.8 1.1E+02 0.0036 24.3 7.6 64 92-156 171-236 (307)
330 3pvs_A Replication-associated 42.8 1.5E+02 0.005 24.8 12.9 124 69-193 165-326 (447)
331 3pvs_A Replication-associated 41.5 1.5E+02 0.0053 24.7 10.3 39 209-247 267-305 (447)
332 3t8k_A Uncharacterized protein 41.4 46 0.0016 23.8 5.0 160 64-231 12-185 (186)
333 1dm5_A Annexin XII E105K mutan 40.8 1.3E+02 0.0046 23.7 8.4 159 72-241 16-197 (315)
334 2zk9_X Protein-glutaminase; de 39.4 60 0.002 23.2 4.9 43 154-196 5-61 (185)
335 3aji_A 26S proteasome non-ATPa 38.6 11 0.00039 27.6 1.4 145 93-256 9-160 (231)
336 2f8y_A Notch homolog 1, transl 38.5 18 0.00062 26.3 2.5 45 92-141 27-74 (223)
337 2d2s_A Exocyst complex compone 38.3 1.3E+02 0.0043 22.7 10.9 88 93-188 24-117 (235)
338 2nsz_A Programmed cell death p 38.2 89 0.003 21.0 9.6 71 124-198 9-79 (129)
339 3hzj_A Rabgap1L, RAB GTPase-ac 38.0 1.4E+02 0.0049 23.3 8.2 44 144-192 176-219 (310)
340 3d9h_A CDNA FLJ77766, highly s 37.5 55 0.0019 25.0 5.3 51 63-121 64-119 (285)
341 2xai_A ASB-9, ankyrin repeat a 37.0 51 0.0018 24.7 5.0 8 207-214 173-180 (261)
342 3bge_A Predicted ATPase; struc 36.9 66 0.0023 23.7 5.0 36 211-246 21-56 (201)
343 2etb_A Transient receptor pote 36.4 26 0.0009 26.2 3.2 57 94-150 6-71 (256)
344 2qq8_A TBC1 domain family memb 36.0 33 0.0011 27.4 3.8 44 144-192 215-258 (334)
345 3lvg_A Clathrin heavy chain 1; 34.2 0.49 1.7E-05 40.5 -7.4 103 63-172 91-214 (624)
346 3o48_A Mitochondria fission 1 34.1 1.1E+02 0.0038 20.8 9.4 63 93-157 46-111 (134)
347 3a54_A Protein-glutaminase; mu 34.0 72 0.0025 24.5 4.9 23 174-196 153-175 (305)
348 2dzn_A Probable 26S proteasome 34.0 37 0.0013 24.6 3.6 169 63-255 7-194 (228)
349 3ljn_A Hypothetical protein; a 33.8 42 0.0014 26.6 4.2 179 29-222 55-266 (364)
350 2rg8_A Programmed cell death p 33.5 1.3E+02 0.0043 21.3 6.8 57 92-150 15-73 (165)
351 3jxi_A Vanilloid receptor-rela 32.9 26 0.0009 26.2 2.6 56 93-148 8-72 (260)
352 3ffl_A Anaphase-promoting comp 32.4 32 0.0011 24.6 2.7 53 204-256 27-87 (167)
353 2ijq_A Hypothetical protein; s 32.1 1.3E+02 0.0046 21.2 7.0 54 97-150 42-103 (161)
354 2p22_A Suppressor protein STP2 31.8 60 0.002 23.3 4.1 57 194-251 108-164 (174)
355 4g8k_A 2-5A-dependent ribonucl 31.0 62 0.0021 25.3 4.7 43 207-256 280-322 (337)
356 3f6q_A Integrin-linked protein 30.9 88 0.003 21.6 5.1 15 65-79 12-26 (179)
357 1yii_A Annexin A5, annexin V, 30.8 2E+02 0.0068 22.7 14.1 159 72-241 18-199 (320)
358 3ffl_A Anaphase-promoting comp 30.2 1.5E+02 0.0051 21.1 7.0 51 63-113 28-89 (167)
359 1n00_A Annexin GH1; membrane-b 30.1 2E+02 0.007 22.7 10.0 158 72-241 20-200 (321)
360 2qfz_A TBC1 domain family memb 30.0 72 0.0025 25.5 4.9 112 103-223 188-312 (345)
361 3hra_A Ankyrin repeat family p 30.0 60 0.002 22.9 4.1 141 63-220 44-198 (201)
362 3f3f_C Nucleoporin NUP85; stru 29.9 1.2E+02 0.0042 26.3 6.4 48 104-151 498-545 (570)
363 4gpm_A Engineered protein OR26 29.4 39 0.0013 23.7 2.9 7 68-74 14-20 (169)
364 2etb_A Transient receptor pote 28.6 26 0.00088 26.2 1.9 121 128-256 5-157 (256)
365 2pnn_A Transient receptor pote 27.1 52 0.0018 24.8 3.5 57 92-148 15-80 (273)
366 1e5r_A Proline oxidase; oxidor 27.1 1.5E+02 0.005 23.3 5.9 62 154-218 206-267 (290)
367 2ii2_A Alpha-11 giardin; helix 26.8 2.3E+02 0.0079 22.2 10.4 159 72-240 79-261 (310)
368 3qye_A TBC1 domain family memb 25.3 2.5E+02 0.0085 22.1 10.2 149 85-245 147-307 (331)
369 2d2s_A Exocyst complex compone 24.9 2.2E+02 0.0076 21.4 9.6 86 63-151 26-120 (235)
370 3c1d_A Protein ORAA, regulator 24.5 1.8E+02 0.0062 20.2 11.1 52 102-155 45-96 (159)
371 3l6a_A Eukaryotic translation 24.3 2.8E+02 0.0097 22.4 10.2 60 92-156 17-82 (364)
372 4evf_A Alpha-1 giardin, giardi 24.3 2.5E+02 0.0086 21.8 10.1 152 72-240 6-179 (295)
373 3qil_A Clathrin heavy chain 1; 24.2 90 0.0031 21.0 3.6 47 94-143 39-85 (125)
374 2y1l_E Darpin-8.4; hydrolase-i 24.2 50 0.0017 22.7 2.7 16 31-46 18-33 (169)
375 2xdt_A Endoplasmic reticulum a 24.0 4.3E+02 0.015 24.4 12.8 149 63-222 688-852 (897)
376 1rw2_A ATP-dependent DNA helic 23.7 62 0.0021 22.6 2.9 32 102-133 73-105 (152)
377 2ion_A PDCD4, programmed cell 23.6 1.9E+02 0.0064 20.0 10.4 72 124-199 11-82 (152)
378 2keb_A DNA polymerase subunit 23.5 1.5E+02 0.0052 19.0 7.6 63 139-203 26-88 (101)
379 1awc_B Protein (GA binding pro 23.5 68 0.0023 21.5 3.2 140 92-252 4-150 (153)
380 3t8k_A Uncharacterized protein 22.8 2E+02 0.0069 20.2 7.1 148 97-252 13-171 (186)
381 1yyh_A HN1;, notch 1, ankyrin 22.8 69 0.0024 23.8 3.4 165 63-254 62-242 (253)
382 1w3w_A Annexin A8; coagulation 22.8 2.9E+02 0.0099 21.9 13.7 159 72-241 25-207 (327)
383 3qye_A TBC1 domain family memb 22.0 2.9E+02 0.0099 21.7 8.9 148 70-225 164-325 (331)
384 2dzn_A Probable 26S proteasome 21.7 13 0.00045 27.1 -0.9 144 94-256 6-161 (228)
385 3lxu_X Tripeptidyl-peptidase 2 21.7 5.5E+02 0.019 25.1 9.6 71 177-250 1264-1335(1354)
386 3utm_A Tankyrase-1; tankyrase, 21.7 1E+02 0.0035 23.8 4.4 19 93-111 27-45 (351)
387 1jog_A Hypothetical protein HI 21.4 1.7E+02 0.0057 20.1 4.8 39 178-216 54-96 (146)
388 3lxu_X Tripeptidyl-peptidase 2 21.4 5.2E+02 0.018 25.3 9.3 32 178-211 1300-1331(1354)
389 4fke_A Aminopeptidase N; zinc 21.1 4.9E+02 0.017 24.0 14.5 122 93-222 692-818 (909)
390 1y8m_A FIS1; mitochondria, unk 20.8 2.1E+02 0.0073 19.7 11.2 46 105-150 60-105 (144)
391 2pnn_A Transient receptor pote 20.5 64 0.0022 24.3 2.8 126 122-256 11-169 (273)
392 3v30_A DNA-binding protein rfx 20.1 92 0.0032 21.2 3.4 143 64-225 8-160 (172)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=7.4e-37 Score=264.71 Aligned_cols=183 Identities=13% Similarity=0.113 Sum_probs=172.9
Q ss_pred cccccCCCCHHHHHHHHHHHHhCCCCCcHH---HHHHHHHhcCC---------hHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043311 62 KVVDEEPTDPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGL---------THEALQLFAQIKDKGHMPDVVAHTAVI 129 (257)
Q Consensus 62 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~ll~~~~~~~~---------~~~a~~~~~~m~~~g~~p~~~~~~~li 129 (257)
+..|++.|++++|.++|++|.+.|+.|+.. +||.+|++.+. ++.|.++|++|.+.|+.||..|||+||
T Consensus 33 id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI 112 (501)
T 4g26_A 33 LDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGA 112 (501)
T ss_dssp HHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 389999999999999999999999999976 48999987665 688999999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 043311 130 EAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209 (257)
Q Consensus 130 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 209 (257)
.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.| .+++|.++|++|.+.|+.||..||++||.+|++
T Consensus 113 ~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g-----~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 113 RLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKG-----DADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCC-----CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999954 499999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchh
Q 043311 210 AQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRG 249 (257)
Q Consensus 210 ~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 249 (257)
.|++++|.++|++|.+.|+.|+..||+.++..+.+.+...
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~a~~ 227 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEVATK 227 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHHHHT
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCcchh
Confidence 9999999999999999999999999999999988755433
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=6.5e-35 Score=252.57 Aligned_cols=181 Identities=18% Similarity=0.215 Sum_probs=155.9
Q ss_pred HHHHHHHHHHHhCCCCCcH----HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------h
Q 043311 72 RNLQEIFHKMRTEGLTNNA----VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ---------G 138 (257)
Q Consensus 72 ~~a~~~~~~m~~~~~~p~~----~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~---------~ 138 (257)
..+..+.+.+.+.+..+.. ..+|++|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3455666777777765443 25799999999999999999999999999999999999999998765 6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 043311 139 KEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218 (257)
Q Consensus 139 ~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 218 (257)
++|+++|++|.+.|+.||..||+++|++|++ .|.+++|.++|++|.+.|+.||..|||+||.+|++.|++++|.+
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~-----~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~ 161 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVA-----KDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYE 161 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHH
Confidence 8899999999999999999999999999999 55599999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 219 LLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 219 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
+|++|.+.|+.||..||++||.+|++.|+.+.|.++|++
T Consensus 162 l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~ 200 (501)
T 4g26_A 162 VDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQR 200 (501)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999863
No 3
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.91 E-value=3.5e-24 Score=192.64 Aligned_cols=131 Identities=13% Similarity=0.110 Sum_probs=114.1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCC
Q 043311 120 PDVVAHTAVIEAYASAGQGKEALRVFMRMLA---SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196 (257)
Q Consensus 120 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 196 (257)
--..|||+||++|++.|++++|.++|++|.+ .|+.||..|||+||++||+ .|++++|.++|++|.+.|+.||
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck-----~G~~~eA~~Lf~eM~~~G~~PD 199 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWAR-----QGAFKELVYVLFMVKDAGLTPD 199 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHTTCCCC
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHh-----CCCHHHHHHHHHHHHHcCCCCc
Confidence 3467899999999999999999999988764 4789999999999999999 5559999999999999999999
Q ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhh
Q 043311 197 AGTYTAVFEAFVRAQK-VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILF 255 (257)
Q Consensus 197 ~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~ 255 (257)
.+|||+||.++++.|+ .++|.++|++|.+.|+.||..||++++.++.+.+-.+.+.+++
T Consensus 200 vvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~ 259 (1134)
T 3spa_A 200 LLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVK 259 (1134)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhC
Confidence 9999999999999987 5788999999999999999999998888888877777666653
No 4
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.88 E-value=8.4e-23 Score=183.82 Aligned_cols=146 Identities=17% Similarity=0.183 Sum_probs=123.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043311 91 VKMFDALSKDGLTHEALQLFAQIKD---KGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167 (257)
Q Consensus 91 ~~ll~~~~~~~~~~~a~~~~~~m~~---~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~ 167 (257)
++||++|++.|++++|.++|.+|.+ .|+.||++|||+||.+|++.|++++|.++|++|.+.|+.||.+|||++|.++
T Consensus 131 naLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~gl 210 (1134)
T 3spa_A 131 LAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCM 210 (1134)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 3699999999999999999998864 4899999999999999999999999999999999999999999999999999
Q ss_pred HhccCCcchh-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHH
Q 043311 168 AAAADGNAKI-LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD------EKAVKEALI 240 (257)
Q Consensus 168 ~~~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~------~~t~~~ll~ 240 (257)
++ .|+ .+.|.++|++|.+.|+.||..+|++++.++.+.+ +++.++++ ..++.|+ ..|...|.+
T Consensus 211 cK-----~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 211 GR-----QDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HH-----HTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred Hh-----CCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 99 444 5789999999999999999999999998877664 44444444 3456654 444445555
Q ss_pred HhhcCC
Q 043311 241 DKRGQG 246 (257)
Q Consensus 241 ~~~~~g 246 (257)
-|...+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 555544
No 5
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.77 E-value=1.9e-17 Score=145.83 Aligned_cols=228 Identities=9% Similarity=-0.068 Sum_probs=178.8
Q ss_pred ccccchhhhhhhhcccCCCCccchhhcccCCCCCC-cccccc--ccccCCCCHHHHHHHHHHHHhCCCC-Cc-HHHHHHH
Q 043311 22 ITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPP-YDPFKK--VVDEEPTDPRNLQEIFHKMRTEGLT-NN-AVKMFDA 96 (257)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~--~~~~~~~~~~~a~~~~~~m~~~~~~-p~-~~~ll~~ 96 (257)
.....+..+.......+....+..++.+.....|+ ...+.. ..+.+.|++++|.++++.+.+.... +. ...+...
T Consensus 303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 382 (597)
T 2xpi_A 303 KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIY 382 (597)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence 44556666677777777777777665544333333 222222 7777888999999998888764321 11 1247889
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcch
Q 043311 97 LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK 176 (257)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~ 176 (257)
|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.+..+|.+ .|
T Consensus 383 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~-----~g 455 (597)
T 2xpi_A 383 YLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQ-----LG 455 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHH-----HT
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH-----cC
Confidence 999999999999999998742 2357899999999999999999999999998764 4578999999999999 44
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHhhcCCchhh
Q 043311 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK----GFVPD--EKAVKEALIDKRGQGFRGV 250 (257)
Q Consensus 177 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~--~~t~~~ll~~~~~~g~~~~ 250 (257)
++++|.++|+.+.+.. +.+..+|+.+...|.+.|++++|.++|+++.+. +..|+ ..+|..+..+|.+.|+.+.
T Consensus 456 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 534 (597)
T 2xpi_A 456 NILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDA 534 (597)
T ss_dssp CHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHH
Confidence 4999999999998642 347889999999999999999999999999876 77888 7899999999999999999
Q ss_pred HHhhhcC
Q 043311 251 INILFGK 257 (257)
Q Consensus 251 ~~~l~~k 257 (257)
|..+|++
T Consensus 535 A~~~~~~ 541 (597)
T 2xpi_A 535 AIDALNQ 541 (597)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988863
No 6
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.75 E-value=3.3e-17 Score=144.37 Aligned_cols=225 Identities=10% Similarity=-0.048 Sum_probs=183.4
Q ss_pred cchhhhhhhhcccCCCCccchhhcccCCCCCCc-ccccc--ccccCCCCHHHHHHHHHHHHhCCCC-C-cHHHHHHHHHh
Q 043311 25 TRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPY-DPFKK--VVDEEPTDPRNLQEIFHKMRTEGLT-N-NAVKMFDALSK 99 (257)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~--~~~~~~~~~~~a~~~~~~m~~~~~~-p-~~~~ll~~~~~ 99 (257)
..+..+.......+....+..++.+.....|+. ..+.. ..+.+.|++++|.++|+.+.+.... + ....+..+|.+
T Consensus 340 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 419 (597)
T 2xpi_A 340 DVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAI 419 (597)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 344555555566666666666654433333432 22222 7889999999999999999874322 2 22368999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHH
Q 043311 100 DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179 (257)
Q Consensus 100 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~ 179 (257)
.|++++|.++|+++.+.+ +.+..+|+.+..+|.+.|++++|.++|+++.+.+ +.+..+|+.+...|.+. |+++
T Consensus 420 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~-----g~~~ 492 (597)
T 2xpi_A 420 EGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNK-----SDMQ 492 (597)
T ss_dssp HTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHT-----TCHH
T ss_pred cCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHh-----CCHH
Confidence 999999999999998763 3478999999999999999999999999999764 44789999999999994 4499
Q ss_pred HHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHh
Q 043311 180 DAQKYLMEMVGK----GMRPN--AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINI 253 (257)
Q Consensus 180 ~a~~~~~~m~~~----g~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~ 253 (257)
+|.++|+++.+. +..|+ ..+|..+..+|.+.|++++|.++|+++.+.+ +.+..+|..+...|...|+.+.|..
T Consensus 493 ~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 571 (597)
T 2xpi_A 493 TAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAIT 571 (597)
T ss_dssp HHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHH
Confidence 999999999865 77888 7899999999999999999999999998875 4588999999999999999999999
Q ss_pred hhcC
Q 043311 254 LFGK 257 (257)
Q Consensus 254 l~~k 257 (257)
+|+|
T Consensus 572 ~~~~ 575 (597)
T 2xpi_A 572 HLHE 575 (597)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8864
No 7
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.44 E-value=1.4e-11 Score=102.81 Aligned_cols=222 Identities=10% Similarity=0.016 Sum_probs=135.8
Q ss_pred hhhhhhhhcccCCCCccchhhcccCCCCCCcccccc---ccccCCCCHHHHHHHHHHHHhCCCCC-c-HHHHHHHHHhcC
Q 043311 27 VNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKK---VVDEEPTDPRNLQEIFHKMRTEGLTN-N-AVKMFDALSKDG 101 (257)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~---~~~~~~~~~~~a~~~~~~m~~~~~~p-~-~~~ll~~~~~~~ 101 (257)
+..+.......+....+...+.+.....|+...... ..+...|++++|.+.|+.+.+..... . ...+...+.+.|
T Consensus 104 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 183 (388)
T 1w3b_A 104 YINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG 183 (388)
T ss_dssp HHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 334444445555565555554444444454333222 55666777777777777776642111 1 113555566666
Q ss_pred ChHHHHHHHHHHHhCC--------------------------------CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043311 102 LTHEALQLFAQIKDKG--------------------------------HMP-DVVAHTAVIEAYASAGQGKEALRVFMRM 148 (257)
Q Consensus 102 ~~~~a~~~~~~m~~~g--------------------------------~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m 148 (257)
++++|...|+++.+.. ..| +..+|..+..+|.+.|++++|...|+++
T Consensus 184 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 263 (388)
T 1w3b_A 184 EIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRA 263 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666666554321 123 3556666777777777777777777777
Q ss_pred HHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 043311 149 LASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF 228 (257)
Q Consensus 149 ~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 228 (257)
.+.+ +.+..+|..+...+.+.| ++++|.+.|+.+.+. .+.+..+|+.+...+.+.|++++|..+++++.+..
T Consensus 264 l~~~-p~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~- 335 (388)
T 1w3b_A 264 IELQ-PHFPDAYCNLANALKEKG-----SVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF- 335 (388)
T ss_dssp HHTC-SSCHHHHHHHHHHHHHHS-----CHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-
T ss_pred HhhC-CCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence 6642 224566777777777733 377777777777653 23456677777777777777777777777776542
Q ss_pred CCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 229 VPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 229 ~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
+.+..++..+...+...|+.+.|...|+
T Consensus 336 p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 363 (388)
T 1w3b_A 336 PEFAAAHSNLASVLQQQGKLQEALMHYK 363 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3346677777777777777777777665
No 8
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.42 E-value=1.2e-11 Score=103.12 Aligned_cols=174 Identities=11% Similarity=0.002 Sum_probs=131.4
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCC-CcH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLT-NNA-VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~-p~~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 140 (257)
..+...|++++|...|....+.... +.. ..+..+|.+.|++++|.+.|+.+.+.. +.+..+|..+..++.+.|++++
T Consensus 211 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 289 (388)
T 1w3b_A 211 NVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAE 289 (388)
T ss_dssp HHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 3444555555555555555443211 111 147778899999999999999998853 2246789999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 043311 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220 (257)
Q Consensus 141 a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 220 (257)
|...|+++.+.. +.+..+|..+...+...|+ +++|..+|+++.+. .+.+..++..+...+.+.|++++|...|
T Consensus 290 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 362 (388)
T 1w3b_A 290 AEDCYNTALRLC-PTHADSLNNLANIKREQGN-----IEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHY 362 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTC-----HHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHHHhhC-cccHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999763 6688999999999999444 99999999999864 2345778999999999999999999999
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHhhcCC
Q 043311 221 QQMKAKGFVP-DEKAVKEALIDKRGQG 246 (257)
Q Consensus 221 ~~m~~~g~~p-~~~t~~~ll~~~~~~g 246 (257)
+++.+. .| +...+..+-..+...|
T Consensus 363 ~~a~~~--~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 363 KEAIRI--SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred HHHHhh--CCCCHHHHHhHHHHHHHcc
Confidence 999874 44 4555555555444433
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.39 E-value=1.2e-11 Score=104.84 Aligned_cols=216 Identities=9% Similarity=0.023 Sum_probs=110.3
Q ss_pred hhhhhhcccCCCCccchhhcccCCCCCCcccccc---ccccCCCCHHHHHHHHHHHHhCCCCCc----HH-HH-------
Q 043311 29 ATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKK---VVDEEPTDPRNLQEIFHKMRTEGLTNN----AV-KM------- 93 (257)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~---~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~-~l------- 93 (257)
.+.......+....+...+.+.....|+...... ..+...|++++|.+.|+.+.+...... .. .+
T Consensus 65 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 144 (450)
T 2y4t_A 65 RRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ 144 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH
Confidence 3333444445555554444443333333221111 556667777777777777666432111 00 11
Q ss_pred -----HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 043311 94 -----FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168 (257)
Q Consensus 94 -----l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~ 168 (257)
...+.+.|++++|..+|+.+.+.. +.+...+..+..+|.+.|++++|..+|+++.+.. +.+..+|..+...+.
T Consensus 145 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 222 (450)
T 2y4t_A 145 RLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYY 222 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 223566666666666666665531 2345566666666666666666666666665442 335566666666666
Q ss_pred hccCCcchhHHHHHHHHHHHHhCCCCCCH-HHHHHH------------HHHHHHcCCHHHHHHHHHHHHHCCCCCC----
Q 043311 169 AAADGNAKILGDAQKYLMEMVGKGMRPNA-GTYTAV------------FEAFVRAQKVDEARGLLQQMKAKGFVPD---- 231 (257)
Q Consensus 169 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~g~~p~---- 231 (257)
..|+ +++|...|+.+... .|+. ..+..+ ...|.+.|++++|..+|+++.+. .|+
T Consensus 223 ~~g~-----~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~ 293 (450)
T 2y4t_A 223 QLGD-----HELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEY 293 (450)
T ss_dssp HTTC-----HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHH
T ss_pred HcCC-----HHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHH
Confidence 6333 66666666555432 2222 222222 44555555555555555555542 233
Q ss_pred -HHHHHHHHHHhhcCCchhhHHhhh
Q 043311 232 -EKAVKEALIDKRGQGFRGVINILF 255 (257)
Q Consensus 232 -~~t~~~ll~~~~~~g~~~~~~~l~ 255 (257)
...+..+...+.+.|+.+.|..++
T Consensus 294 ~~~~~~~l~~~~~~~g~~~~A~~~~ 318 (450)
T 2y4t_A 294 TVRSKERICHCFSKDEKPVEAIRVC 318 (450)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 234444555555555555555544
No 10
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.37 E-value=1.1e-10 Score=94.06 Aligned_cols=182 Identities=13% Similarity=0.075 Sum_probs=145.6
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHH----HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAV----KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQG 138 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 138 (257)
..+...++.+.|.+.++.+...+..|+.. .+-..+.+.|++++|.+.|+. ..+...+..+...|.+.|++
T Consensus 73 ~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~ 146 (291)
T 3mkr_A 73 EYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRL 146 (291)
T ss_dssp HHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCH
T ss_pred HHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCH
Confidence 67788999999999999999887666543 245788899999999999987 46788999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 043311 139 KEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218 (257)
Q Consensus 139 ~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 218 (257)
++|...|+++.+.. |+.. ...+..++..... ..|++++|..+|+++.+. .+.+...|+.+-.++.+.|++++|..
T Consensus 147 ~~A~~~l~~~~~~~--p~~~-~~~l~~a~~~l~~-~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~ 221 (291)
T 3mkr_A 147 DLARKELKKMQDQD--EDAT-LTQLATAWVSLAA-GGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEG 221 (291)
T ss_dssp HHHHHHHHHHHHHC--TTCH-HHHHHHHHHHHHH-CTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhhC--cCcH-HHHHHHHHHHHHh-CchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999763 5532 2233333322111 146699999999999875 45678889999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHhhcCCchhh-HHhhhc
Q 043311 219 LLQQMKAKGFVPDEKAVKEALIDKRGQGFRGV-INILFG 256 (257)
Q Consensus 219 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~-~~~l~~ 256 (257)
.|++..... +-+..++..+...+...|.... +.++++
T Consensus 222 ~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~ 259 (291)
T 3mkr_A 222 VLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLS 259 (291)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 999988763 3477889999999999998754 667764
No 11
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.35 E-value=2.4e-10 Score=89.27 Aligned_cols=186 Identities=8% Similarity=-0.022 Sum_probs=149.0
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCC-CcH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLT-NNA-VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~-p~~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 140 (257)
..+...|+++.|.+.|+.+.+.... +.. ..+...|.+.|++++|.++|+...+.. +.+...|..+...|...|++++
T Consensus 45 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~ 123 (252)
T 2ho1_A 45 LGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKRYEE 123 (252)
T ss_dssp HHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhHHHH
Confidence 6677889999999999998875322 111 246778889999999999999987753 2367788899999999999999
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 043311 141 ALRVFMRMLASGVAP-NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGL 219 (257)
Q Consensus 141 a~~~~~~m~~~g~~~-~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~ 219 (257)
|..+|++..+.+..| +...|..+...+...|+ +++|.++|+...+.. +.+...+..+...+...|++++|..+
T Consensus 124 A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-----~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~ 197 (252)
T 2ho1_A 124 AYQRLLEASQDTLYPERSRVFENLGLVSLQMKK-----PAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQY 197 (252)
T ss_dssp HHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCccCcccHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999998743444 56778888888888444 999999999887642 23577888899999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 220 LQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 220 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
++++.+.. ..+...+..+...+...|+.+.|..+++
T Consensus 198 ~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 233 (252)
T 2ho1_A 198 YDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGL 233 (252)
T ss_dssp HHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99988753 3567778888888999999999988775
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.35 E-value=2.1e-11 Score=103.38 Aligned_cols=223 Identities=11% Similarity=0.026 Sum_probs=171.9
Q ss_pred cchhhhhhhhcccCCCCccchhhcccCCCCCCcc---ccc--------------c-ccccCCCCHHHHHHHHHHHHhCCC
Q 043311 25 TRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYD---PFK--------------K-VVDEEPTDPRNLQEIFHKMRTEGL 86 (257)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~--------------~-~~~~~~~~~~~a~~~~~~m~~~~~ 86 (257)
..+..+.......+....+...+.+.....|+.. ... . ..+...|+++.|.+.|+.+.+...
T Consensus 95 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 174 (450)
T 2y4t_A 95 AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV 174 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3444555556667777777777666666666543 111 1 347789999999999999987532
Q ss_pred C-CcH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH-
Q 043311 87 T-NNA-VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL- 163 (257)
Q Consensus 87 ~-p~~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~l- 163 (257)
. +.. ..+..+|.+.|++++|.++|+.+.+.. +.+..+|..+..+|...|++++|...|+++.+.. +.+...+..+
T Consensus 175 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~ 252 (450)
T 2y4t_A 175 WDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYK 252 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHH
Confidence 2 111 247889999999999999999998752 3468899999999999999999999999998652 2344455444
Q ss_pred -----------HHHHHhccCCcchhHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 043311 164 -----------IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN-----AGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227 (257)
Q Consensus 164 -----------l~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 227 (257)
...|.. .|.+++|..+|+.+.+. .|+ ..+|..+...+.+.|++++|...++++....
T Consensus 253 ~~~~~~~~~~~~~~~~~-----~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 325 (450)
T 2y4t_A 253 QVKKLNKLIESAEELIR-----DGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME 325 (450)
T ss_dssp HHHHHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 677888 45599999999999863 455 4578889999999999999999999998753
Q ss_pred CCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 228 FVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 228 ~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
+.+...+..+..+|...|+.+.|...|++
T Consensus 326 -p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 354 (450)
T 2y4t_A 326 -PDNVNALKDRAEAYLIEEMYDEAIQDYET 354 (450)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -cccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 34689999999999999999999988763
No 13
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.33 E-value=6.1e-10 Score=85.00 Aligned_cols=187 Identities=11% Similarity=-0.006 Sum_probs=148.2
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCC-CcH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CChH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLT-NNA-VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASA-GQGK 139 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~-p~~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-~~~~ 139 (257)
..+...|+++.|.+.|+...+.... +.. ..+...|...|++++|.++|+...+.. +.+..+|..+...|... |+++
T Consensus 16 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~ 94 (225)
T 2vq2_A 16 MEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRPA 94 (225)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHH
Confidence 5667889999999999998875322 222 247778889999999999999987752 23677889999999999 9999
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 043311 140 EALRVFMRMLASGVAP-NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218 (257)
Q Consensus 140 ~a~~~~~~m~~~g~~~-~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 218 (257)
+|...|++..+.+..| +...|..+...+...|+ +++|...|+...+.. +.+...+..+...+.+.|++++|..
T Consensus 95 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 168 (225)
T 2vq2_A 95 ESMAYFDKALADPTYPTPYIANLNKGICSAKQGQ-----FGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADY 168 (225)
T ss_dssp HHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHH
Confidence 9999999998743333 36788888888888444 999999999887642 2357788889999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 219 LLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 219 ~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
++++..+..-..+...+..+...+...|+.+.+..+++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 206 (225)
T 2vq2_A 169 YFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEA 206 (225)
T ss_dssp HHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 99998876422567777777788889999998887764
No 14
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.32 E-value=2e-10 Score=89.04 Aligned_cols=185 Identities=17% Similarity=0.090 Sum_probs=112.2
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCC-cH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTN-NA-VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p-~~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 140 (257)
..+...|+++.|...|+...+..... .. ..+...|.+.|++++|.+.|+...+.. +.+...|..+...|...|++++
T Consensus 31 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 109 (243)
T 2q7f_A 31 GRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYKE 109 (243)
T ss_dssp -----------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHHH
Confidence 45566777777777777776632211 11 135566677777777777777766542 2355667777777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 043311 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220 (257)
Q Consensus 141 a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 220 (257)
|...|++..+.. +.+...|..+...+...|+ +++|..+++...+.. +.+...+..+...+.+.|++++|.+.+
T Consensus 110 A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~-----~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 182 (243)
T 2q7f_A 110 AKDMFEKALRAG-MENGDLFYMLGTVLVKLEQ-----PKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQF 182 (243)
T ss_dssp HHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSC-----HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcc-----HHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 777777776653 3356667777777777443 777777777766431 224566667777777777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 221 QQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 221 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
++..+.. ..+..++..+...+...|+.+.|..+|+
T Consensus 183 ~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 217 (243)
T 2q7f_A 183 AAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLD 217 (243)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred HHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 7776543 2345667777777777777777776664
No 15
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.30 E-value=3.4e-10 Score=87.11 Aligned_cols=185 Identities=15% Similarity=-0.009 Sum_probs=142.1
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCC-CCcHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGL-TNNAV-KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASA----- 135 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~-~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~----- 135 (257)
..+.+.|++++|...|+...+..- .+... .+-.++.+.|++++|...|+...+.. +-+...|..+-.++...
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~ 91 (217)
T 2pl2_A 13 VQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYVALYRQAE 91 (217)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhhhhhh
Confidence 567789999999999999987532 22222 46778899999999999999988752 23567888888999999
Q ss_pred ------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 043311 136 ------GQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVR 209 (257)
Q Consensus 136 ------~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 209 (257)
|++++|...|++..+.. +-+...|..+-..+...| ++++|...|++..+.. .+...+..+-..|..
T Consensus 92 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g-----~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~ 163 (217)
T 2pl2_A 92 DRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLG-----ERDKAEASLKQALALE--DTPEIRSALAELYLS 163 (217)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHH
T ss_pred hhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHhcc--cchHHHHHHHHHHHH
Confidence 99999999999998753 336788888888898844 4999999999988765 688889999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 210 AQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 210 ~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
.|++++|...|++..+.. +-+...+..+-..+...|+.+.|...|++
T Consensus 164 ~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 164 MGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-------------
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999999998753 33677888888999999999999988875
No 16
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.26 E-value=1.1e-10 Score=96.37 Aligned_cols=220 Identities=10% Similarity=-0.014 Sum_probs=141.1
Q ss_pred hhhhcccCCCCccchhhcccCCCCCCcccccc---ccccCCCCHHHHHHHHHHHHhCCCC-CcH-HHHHHHHHhcCChHH
Q 043311 31 LQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKK---VVDEEPTDPRNLQEIFHKMRTEGLT-NNA-VKMFDALSKDGLTHE 105 (257)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~---~~~~~~~~~~~a~~~~~~m~~~~~~-p~~-~~ll~~~~~~~~~~~ 105 (257)
.......+....+...+.+.....|+...... ..+...|+++.|.+.|+.+.+.... +.. ..+..+|...|++++
T Consensus 71 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~ 150 (368)
T 1fch_A 71 GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQ 150 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Confidence 33344445555555444443333333221111 5556666666666666666654311 111 135555566666666
Q ss_pred HHHHHHHHHhCCC-----------------------------------------------CC---CHHHHHHHHHHHHhc
Q 043311 106 ALQLFAQIKDKGH-----------------------------------------------MP---DVVAHTAVIEAYASA 135 (257)
Q Consensus 106 a~~~~~~m~~~g~-----------------------------------------------~p---~~~~~~~li~~~~~~ 135 (257)
|.+.|+.+.+... .| +..+|..+-..|.+.
T Consensus 151 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~ 230 (368)
T 1fch_A 151 ACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLS 230 (368)
T ss_dssp HHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHc
Confidence 6666655544211 12 467788888888888
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 043311 136 GQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215 (257)
Q Consensus 136 ~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 215 (257)
|++++|...|++..+.. +.+..+|..+...+...|+ +++|...|+...+.. +.+...+..+...|.+.|++++
T Consensus 231 g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~ 303 (368)
T 1fch_A 231 GEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQ-----SEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHRE 303 (368)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHH
Confidence 88888888888887652 3457788888888888444 888888888876531 2356778888888888899999
Q ss_pred HHHHHHHHHHCCCC----------CCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 216 ARGLLQQMKAKGFV----------PDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 216 a~~~~~~m~~~g~~----------p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
|...|++..+..-. ....++..+..++...|+.+.+..++.+
T Consensus 304 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 304 AVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 98888888763211 1257888888888888888888887653
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.26 E-value=3.3e-10 Score=91.69 Aligned_cols=187 Identities=11% Similarity=-0.015 Sum_probs=119.7
Q ss_pred ccccCCC-CHHHHHHHHHHHHhCCCC-CcH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 043311 63 VVDEEPT-DPRNLQEIFHKMRTEGLT-NNA-VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGK 139 (257)
Q Consensus 63 ~~~~~~~-~~~~a~~~~~~m~~~~~~-p~~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 139 (257)
..+...| +++.|.+.|+...+..-. +.. ..+...+...|++++|.+.|+...+.. +.+...+..+-..|...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 4555666 677777777766654321 111 235666667777777777777766542 123455556667777777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHHcC
Q 043311 140 EALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG--------MRPNAGTYTAVFEAFVRAQ 211 (257)
Q Consensus 140 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g--------~~p~~~~~~~li~~~~~~~ 211 (257)
+|...|++..+.. +.+...+..+...+...|+ +++|...++...+.. .+.....|..+...+...|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~-----~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 250 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGE-----WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHccc-----HHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence 7777777776653 3356677777777777433 777777777665420 1233457777777777778
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 212 KVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 212 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
++++|...+++..+.. +.+...+..+-..+...|+.+.|..+|++
T Consensus 251 ~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 295 (330)
T 3hym_B 251 KYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHT 295 (330)
T ss_dssp CHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 8888888877777653 23556677777777777777777777654
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.25 E-value=4.5e-10 Score=90.89 Aligned_cols=224 Identities=9% Similarity=-0.098 Sum_probs=164.2
Q ss_pred chhhhhhhhcccCCCCccchhhcccCCCCCCccccc---cccccCCCCHHHHHHHHHHHHhCCC-CCcHH-HHHHHHHhc
Q 043311 26 RVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFK---KVVDEEPTDPRNLQEIFHKMRTEGL-TNNAV-KMFDALSKD 100 (257)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~-~ll~~~~~~ 100 (257)
.+..........++...+...+.+.....|...... ...+...|++++|..++..+.+... .+... .+-..+...
T Consensus 24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 103 (330)
T 3hym_B 24 VVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMV 103 (330)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 334444555556666666665544333334332222 2666788999999999998887432 23222 467778888
Q ss_pred C-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHH
Q 043311 101 G-LTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179 (257)
Q Consensus 101 ~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~ 179 (257)
| ++++|.+.|+...+.. +.+...|..+-..+...|++++|...|++..+.. +.+...+..+...+...|+ ++
T Consensus 104 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~-----~~ 176 (330)
T 3hym_B 104 GHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN-----SK 176 (330)
T ss_dssp CSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC-----HH
T ss_pred hhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh-----HH
Confidence 8 8999999999888753 2356788889999999999999999999988763 3345677778888888444 99
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHhhcCCchhhH
Q 043311 180 DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG--------FVPDEKAVKEALIDKRGQGFRGVI 251 (257)
Q Consensus 180 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--------~~p~~~t~~~ll~~~~~~g~~~~~ 251 (257)
+|.+.++...+.. +.+...+..+...+...|++++|...+++..+.. ...+...+..+-..+...|+.+.|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999988652 3356788889999999999999999999988631 133457888888999999999999
Q ss_pred HhhhcC
Q 043311 252 NILFGK 257 (257)
Q Consensus 252 ~~l~~k 257 (257)
..+|++
T Consensus 256 ~~~~~~ 261 (330)
T 3hym_B 256 LDYHRQ 261 (330)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888753
No 19
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.25 E-value=6.9e-11 Score=97.67 Aligned_cols=186 Identities=8% Similarity=-0.067 Sum_probs=113.5
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCC-CcH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLT-NNA-VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~-p~~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 140 (257)
..+.+.|++++|.++|+.+.+.... +.. ..+..+|.+.|++++|.+.|+...+.. +.+..+|..+..+|...|++++
T Consensus 73 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 151 (365)
T 4eqf_A 73 LKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNTSHQQD 151 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccccHHH
Confidence 4445555555555555555543211 111 124455555555555555555554431 1234455555555555555555
Q ss_pred HHHHHHHHH--------------------------------------------HCCC-CCCHHHHHHHHHHHHhccCCcc
Q 043311 141 ALRVFMRML--------------------------------------------ASGV-APNAYTYAVLIKGLAAAADGNA 175 (257)
Q Consensus 141 a~~~~~~m~--------------------------------------------~~g~-~~~~~t~~~ll~~~~~~~~~~~ 175 (257)
|...|+++. +.+- .++..+|..+...+...|
T Consensus 152 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g---- 227 (365)
T 4eqf_A 152 ACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSG---- 227 (365)
T ss_dssp HHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCC----
Confidence 555555544 3211 115677777777777744
Q ss_pred hhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhh
Q 043311 176 KILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILF 255 (257)
Q Consensus 176 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~ 255 (257)
++++|.++|+...+.. +.+..+|+.+...|...|++++|...|++..+.. +-+..++..+-..+...|+.+.|..+|
T Consensus 228 -~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 304 (365)
T 4eqf_A 228 -EFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNF 304 (365)
T ss_dssp -CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred -CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4888888888876531 2356778888888888888888888888887653 234777777888888888888887776
Q ss_pred c
Q 043311 256 G 256 (257)
Q Consensus 256 ~ 256 (257)
+
T Consensus 305 ~ 305 (365)
T 4eqf_A 305 L 305 (365)
T ss_dssp H
T ss_pred H
Confidence 5
No 20
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.24 E-value=8.8e-11 Score=94.98 Aligned_cols=153 Identities=10% Similarity=-0.009 Sum_probs=114.3
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcch
Q 043311 97 LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK 176 (257)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~ 176 (257)
+...|++++|.++|+...+.. +.+...+..+...|.+.|++++|...|++..+.. +.+..+|..+...+...|+
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~---- 221 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNR---- 221 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC----
T ss_pred HHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCC----
Confidence 334444555555555554432 2256778888888999999999999999888763 3467888888888888444
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHhhcC
Q 043311 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP-----------DEKAVKEALIDKRGQ 245 (257)
Q Consensus 177 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-----------~~~t~~~ll~~~~~~ 245 (257)
+++|...|+...+.. +.+...+..+...|...|++++|.+.+++..+..-.. +...+..+...+...
T Consensus 222 -~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 299 (327)
T 3cv0_A 222 -PQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVM 299 (327)
T ss_dssp -HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhc
Confidence 999999998877642 2356788888899999999999999999887643221 467888888899999
Q ss_pred CchhhHHhhhcC
Q 043311 246 GFRGVINILFGK 257 (257)
Q Consensus 246 g~~~~~~~l~~k 257 (257)
|+.+.|..++++
T Consensus 300 g~~~~A~~~~~~ 311 (327)
T 3cv0_A 300 NRPDLVELTYAQ 311 (327)
T ss_dssp TCHHHHHHHTTC
T ss_pred CCHHHHHHHHHH
Confidence 999999888764
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.23 E-value=2.5e-10 Score=94.08 Aligned_cols=186 Identities=10% Similarity=-0.013 Sum_probs=133.4
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCc-H-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNN-A-VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~-~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 140 (257)
..+...|+++.|...|+.+.+...... . ..+..+|.+.|++++|.+.|+...+.. +.+..+|..+...|...|++++
T Consensus 72 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~ 150 (368)
T 1fch_A 72 LRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQ 150 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 778899999999999999998642211 1 247788999999999999999998763 3467899999999999999999
Q ss_pred HHHHHHHHHHCCCC-----------------------------------------------C---CHHHHHHHHHHHHhc
Q 043311 141 ALRVFMRMLASGVA-----------------------------------------------P---NAYTYAVLIKGLAAA 170 (257)
Q Consensus 141 a~~~~~~m~~~g~~-----------------------------------------------~---~~~t~~~ll~~~~~~ 170 (257)
|...|+++.+.... | +..+|..+...+...
T Consensus 151 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~ 230 (368)
T 1fch_A 151 ACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLS 230 (368)
T ss_dssp HHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHc
Confidence 99999988764311 1 355666666666663
Q ss_pred cCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhh
Q 043311 171 ADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGV 250 (257)
Q Consensus 171 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 250 (257)
| .+++|...|+...... +.+...|..+...+...|++++|...|+++.+.. +.+...+..+-..+...|+.+.
T Consensus 231 g-----~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~ 303 (368)
T 1fch_A 231 G-----EYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHRE 303 (368)
T ss_dssp T-----CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred C-----CHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHH
Confidence 3 3777777777665431 2245566677777777777777777777766542 2345666666677777777777
Q ss_pred HHhhhc
Q 043311 251 INILFG 256 (257)
Q Consensus 251 ~~~l~~ 256 (257)
|...|+
T Consensus 304 A~~~~~ 309 (368)
T 1fch_A 304 AVEHFL 309 (368)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766654
No 22
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.22 E-value=9.6e-10 Score=85.71 Aligned_cols=188 Identities=14% Similarity=0.037 Sum_probs=141.6
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHH-HHHHHHHhcCChHHHHHHHHHHHhCCC--CCC----HHHHHHHHHHHHhc
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAV-KMFDALSKDGLTHEALQLFAQIKDKGH--MPD----VVAHTAVIEAYASA 135 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~ll~~~~~~~~~~~a~~~~~~m~~~g~--~p~----~~~~~~li~~~~~~ 135 (257)
..+...|+++.|.+.|+...+..-.+... .+..+|...|++++|.+.|+...+... .++ ..+|..+-..|...
T Consensus 13 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 92 (258)
T 3uq3_A 13 NKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKL 92 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHc
Confidence 45566788888888888888766222222 467778888888888888888765321 112 57788888888888
Q ss_pred CChHHHHHHHHHHHHCC------------------------C-CCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHh
Q 043311 136 GQGKEALRVFMRMLASG------------------------V-APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190 (257)
Q Consensus 136 ~~~~~a~~~~~~m~~~g------------------------~-~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~ 190 (257)
|++++|...|++..+.. . +.+...|..+...+... |++++|...|+...+
T Consensus 93 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~A~~~~~~a~~ 167 (258)
T 3uq3_A 93 GDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTK-----SDWPNAVKAYTEMIK 167 (258)
T ss_dssp TCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHh
Confidence 88888888888887631 1 22446677777778884 449999999999876
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 191 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
.. +.+...|..+...|...|++++|...+++..+.. +.+...+..+-..+...|+.+.|...|++
T Consensus 168 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 168 RA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 42 3367788889999999999999999999998764 34578888888899999999999888753
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.22 E-value=6.3e-10 Score=91.84 Aligned_cols=163 Identities=10% Similarity=-0.009 Sum_probs=130.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043311 90 AVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169 (257)
Q Consensus 90 ~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~ 169 (257)
...+-..+.+.|++++|.++|+.+.+.. +.+..+|..+-.+|.+.|++++|...|++..+.. +.+..+|..+...|..
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTN 145 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHc
Confidence 4467788899999999999999998753 3467899999999999999999999999998763 4468899999999998
Q ss_pred ccC---------------------------------------CcchhHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHH
Q 043311 170 AAD---------------------------------------GNAKILGDAQKYLMEMVGKGMRP---NAGTYTAVFEAF 207 (257)
Q Consensus 170 ~~~---------------------------------------~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~li~~~ 207 (257)
.|+ ...|.+++|.++|+++.+. .| +..++..+...|
T Consensus 146 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ--NGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH--SCSSCCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh--CcCccCHHHHHHHHHHH
Confidence 666 0123344444444444432 23 578899999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 208 VRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 208 ~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
...|++++|.++|++..+.. +.+..++..+...+...|+.+.|...|++
T Consensus 224 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 272 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTR 272 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999998763 34688999999999999999999988863
No 24
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.21 E-value=5.2e-10 Score=90.10 Aligned_cols=177 Identities=13% Similarity=0.037 Sum_probs=140.3
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHH---HHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCh
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMPD-VVAHTAVIEAYASAGQG 138 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~ 138 (257)
.++...|+++.|...++. .-.|+.. .+...+...++.++|.+.++++...+..|+ ...+..+-.++...|++
T Consensus 42 r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~ 117 (291)
T 3mkr_A 42 RAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNP 117 (291)
T ss_dssp HHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCH
Confidence 788889999999976644 1233322 367788889999999999999988776665 45556666889999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHHcCCHHH
Q 043311 139 KEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTY---TAVFEAFVRAQKVDE 215 (257)
Q Consensus 139 ~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~---~~li~~~~~~~~~~~ 215 (257)
++|...|++ ..+...+..+...+.+ .|++++|.+.|+.+.+. .|+...+ ..++..+...|++++
T Consensus 118 ~~Al~~l~~------~~~~~~~~~l~~~~~~-----~g~~~~A~~~l~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~e 184 (291)
T 3mkr_A 118 DAALRTLHQ------GDSLECMAMTVQILLK-----LDRLDLARKELKKMQDQ--DEDATLTQLATAWVSLAAGGEKLQD 184 (291)
T ss_dssp HHHHHHHTT------CCSHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHH
T ss_pred HHHHHHHhC------CCCHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhCchHHHH
Confidence 999999987 5688899999999999 45599999999999875 3654322 223344445689999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 216 ARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 216 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
|..+|+++.+. .+.+...+..+-.++...|+.+.|+..|++
T Consensus 185 A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~ 225 (291)
T 3mkr_A 185 AYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQE 225 (291)
T ss_dssp HHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999987 456888999999999999999999998864
No 25
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.19 E-value=3.6e-11 Score=101.00 Aligned_cols=197 Identities=11% Similarity=0.038 Sum_probs=82.7
Q ss_pred chhhhhhhhcccCCCCccchhhcccCCCCCCccccccccccCCCCHHHHHHHHHHHHhCCCCCcH-HHHHHHHHhcCChH
Q 043311 26 RVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKKVVDEEPTDPRNLQEIFHKMRTEGLTNNA-VKMFDALSKDGLTH 104 (257)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~ll~~~~~~~~~~ 104 (257)
.+..+....+..+....+.+.+.+.. .|+.....+..+...|++++|.+.++...+..-.|.. ..++.+|.+.|+++
T Consensus 34 vWs~La~A~l~~g~~~eAIdsfika~--D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~ 111 (449)
T 1b89_A 34 VWSQLAKAQLQKGMVKEAIDSYIKAD--DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLA 111 (449)
T ss_dssp -----------------------------------------------------------------------------CHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHH
Confidence 66677777777777777666655432 2223333337778889999999977766664212221 14888999999998
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHH
Q 043311 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKY 184 (257)
Q Consensus 105 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~ 184 (257)
++.++++ .|+..+|+.+-..|...|++++|...|..+ ..|..+...+.+.|+ ++.|.+.
T Consensus 112 e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~-----yq~AVea 170 (449)
T 1b89_A 112 ELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGE-----YQAAVDG 170 (449)
T ss_dssp HHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTC-----HHHHHHH
T ss_pred HHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhcc-----HHHHHHH
Confidence 8888774 377778999999999999999999999876 378888888888555 8888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 185 LMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 185 ~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
+... .+..+|..++.+|+..|+++.|..+... +...+.-...++..|.+.|.++.+..+++
T Consensus 171 ~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe 231 (449)
T 1b89_A 171 ARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLE 231 (449)
T ss_dssp HHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHH
Confidence 8887 2688889999999999988888665443 33344445578888888888888887775
No 26
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.18 E-value=1.5e-09 Score=83.98 Aligned_cols=197 Identities=10% Similarity=0.012 Sum_probs=140.3
Q ss_pred ccccchhhhhhhhcccCCCCccchhhcccCCCCCCcccccc---ccccCCCCHHHHHHHHHHHHhCCCCC-cH-HHHHHH
Q 043311 22 ITNTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKK---VVDEEPTDPRNLQEIFHKMRTEGLTN-NA-VKMFDA 96 (257)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~---~~~~~~~~~~~a~~~~~~m~~~~~~p-~~-~~ll~~ 96 (257)
.....+..........+....+...+.+.....|+...... ..+...|++++|.+.++...+..... .. ..+...
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV 100 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 33344444555666677777777776665555554322222 67789999999999999998754222 11 247788
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcch
Q 043311 97 LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK 176 (257)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~ 176 (257)
|...|++++|.++|+...+.. +.+...|..+...+.+.|++++|...|++..+.. +.+...+..+...+...|+
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~---- 174 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGM---- 174 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC----
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCC----
Confidence 899999999999999988753 3467889999999999999999999999988763 4478889999999999554
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 043311 177 ILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK 226 (257)
Q Consensus 177 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 226 (257)
+++|...|+...+.. +.+..++..+...|...|++++|.+.+++..+.
T Consensus 175 -~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 175 -LDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp -CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 999999999987642 335778999999999999999999999999875
No 27
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.17 E-value=2.6e-09 Score=83.34 Aligned_cols=198 Identities=14% Similarity=0.040 Sum_probs=149.9
Q ss_pred hhhcccCCCCccchhhcccCCCCCCcccc-cc--ccccCCCCHHHHHHHHHHHHhCCCC-CcH-HHHHHHHHhcCChHHH
Q 043311 32 QRSLSSSSDQPTKKYVNTKSKLPPPYDPF-KK--VVDEEPTDPRNLQEIFHKMRTEGLT-NNA-VKMFDALSKDGLTHEA 106 (257)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~--~~~~~~~~~~~a~~~~~~m~~~~~~-p~~-~~ll~~~~~~~~~~~a 106 (257)
......+....+...+.+.....|+.... .. ..+...|++++|.+.|+.+.+.... +.. ..+...|...|++++|
T Consensus 45 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 124 (252)
T 2ho1_A 45 LGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEA 124 (252)
T ss_dssp HHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHH
Confidence 34455666666666655443334432221 11 6788999999999999999875432 222 2477888999999999
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHH
Q 043311 107 LQLFAQIKDKGHMP-DVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185 (257)
Q Consensus 107 ~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~ 185 (257)
.++|+...+.+..| +...|..+...|...|++++|...|++..+.. +.+...|..+...+...|+ +++|..++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~-----~~~A~~~~ 198 (252)
T 2ho1_A 125 YQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKERE-----YVPARQYY 198 (252)
T ss_dssp HHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTC-----HHHHHHHH
T ss_pred HHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCC-----HHHHHHHH
Confidence 99999998844455 46788889999999999999999999988764 3468889999999999555 99999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043311 186 MEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEA 238 (257)
Q Consensus 186 ~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~l 238 (257)
+...+. .+.+...+..+...+.+.|+.++|.++++++.+. .|+...+..+
T Consensus 199 ~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~ 248 (252)
T 2ho1_A 199 DLFAQG-GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLEYQEF 248 (252)
T ss_dssp HHHHTT-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHHHHHH
T ss_pred HHHHHh-CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHHHHHH
Confidence 998864 2346678888999999999999999999999875 3554444333
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.16 E-value=1.5e-08 Score=81.77 Aligned_cols=184 Identities=9% Similarity=-0.004 Sum_probs=113.4
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCC-CcH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHH-----------
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLT-NNA-VKMFDALSKDGLTHEALQLFAQIKDKGHMPDV-VAHTAV----------- 128 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~-p~~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l----------- 128 (257)
..+...|+++.|.+.++.+.+.... +.. ..+...|...|++++|.+.|+...+.. |+. ..+..+
T Consensus 63 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 140 (327)
T 3cv0_A 63 LTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLN 140 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTTTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHH
Confidence 4455556666666666655553211 111 124555556666666666666655432 211 122221
Q ss_pred ---HH-HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043311 129 ---IE-AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVF 204 (257)
Q Consensus 129 ---i~-~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 204 (257)
-. .+...|++++|...|++..+.. +.+...+..+...+...|+ +++|.++++...+.. +.+...|..+.
T Consensus 141 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~-----~~~A~~~~~~~~~~~-~~~~~~~~~l~ 213 (327)
T 3cv0_A 141 VQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNN-----YDSAAANLRRAVELR-PDDAQLWNKLG 213 (327)
T ss_dssp -----CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcc-----HHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 11 2445556666666666665542 3356777777777777444 888888888877542 23567788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 205 EAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 205 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
..+...|++++|...++++.+.. +.+...+..+...+...|+.+.|..+|+
T Consensus 214 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 264 (327)
T 3cv0_A 214 ATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLV 264 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 88888888888888888887653 3357778888888888888888887775
No 29
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.14 E-value=3.1e-11 Score=101.34 Aligned_cols=183 Identities=10% Similarity=0.041 Sum_probs=68.3
Q ss_pred CCCCccchhhcccCCCCCCcccccc-ccccCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 043311 38 SSDQPTKKYVNTKSKLPPPYDPFKK-VVDEEPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDK 116 (257)
Q Consensus 38 ~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 116 (257)
++.+.+.++..+.+. |+ .-+.+ .++.+.|++++|.+.|.+.. -......++.++...|++++|..+++..++.
T Consensus 17 ~~ld~A~~fae~~~~--~~-vWs~La~A~l~~g~~~eAIdsfika~---D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~ 90 (449)
T 1b89_A 17 GNLDRAYEFAERCNE--PA-VWSQLAKAQLQKGMVKEAIDSYIKAD---DPSSYMEVVQAANTSGNWEELVKYLQMARKK 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhCCC--hH-HHHHHHHHHHHcCCHHHHHHHHHcCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 445566666555521 22 22233 88899999999999997642 1223335888999999999999977766663
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCC
Q 043311 117 GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196 (257)
Q Consensus 117 g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 196 (257)
.+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+-..|.. .|.+++|..+|..+
T Consensus 91 --~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~-----~g~yeeA~~~Y~~a-------- 148 (449)
T 1b89_A 91 --ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYD-----EKMYDAAKLLYNNV-------- 148 (449)
T ss_dssp --------------------CHHHHTTTTT-------CC---------------------CTTTHHHHHHHT--------
T ss_pred --CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHH-----cCCHHHHHHHHHHh--------
Confidence 5668889999999999999999988884 4788899999999999 66699999999976
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhh
Q 043311 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILF 255 (257)
Q Consensus 197 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~ 255 (257)
..|..+..++++.|++++|.+.++++ -+..+|..++.+|...|+++.|+...
T Consensus 149 -~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~ 200 (449)
T 1b89_A 149 -SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCG 200 (449)
T ss_dssp -TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTT
T ss_pred -hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHH
Confidence 48999999999999999999999998 37899999999999999999997654
No 30
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.14 E-value=2.8e-08 Score=78.67 Aligned_cols=182 Identities=12% Similarity=0.014 Sum_probs=137.7
Q ss_pred ccccC----CCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 043311 63 VVDEE----PTDPRNLQEIFHKMRTEGLTNNAVKMFDALSK----DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS 134 (257)
Q Consensus 63 ~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 134 (257)
..+.. .+++++|.+.|+...+.+.......+-..|.. .+++++|.+.|+...+.+ +...+..+-..|..
T Consensus 46 ~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~ 122 (273)
T 1ouv_A 46 VLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHD 122 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHc
Confidence 55566 88999999999988887732222346667777 889999999998888764 67788888888888
Q ss_pred ----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-
Q 043311 135 ----AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVR- 209 (257)
Q Consensus 135 ----~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~- 209 (257)
.+++++|...|++..+.+ +...+..+-..+... .+..+.+++|...|+...+.+ +...+..+-..|..
T Consensus 123 ~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~-~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g 195 (273)
T 1ouv_A 123 GKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAG-RGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHG 195 (273)
T ss_dssp CSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT-SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT
T ss_pred CCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcC-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 889999999998888765 566666666666651 111334899999998887654 56677778888888
Q ss_pred ---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc----CCchhhHHhhhcC
Q 043311 210 ---AQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRG----QGFRGVINILFGK 257 (257)
Q Consensus 210 ---~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~~~~l~~k 257 (257)
.+++++|...|++..+.+- ...+..+-..+.. .|+.++|...|+|
T Consensus 196 ~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~ 247 (273)
T 1ouv_A 196 EGATKNFKEALARYSKACELEN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKK 247 (273)
T ss_dssp CSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHhCCC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHH
Confidence 8899999999999888752 5667777777777 8888888888753
No 31
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.13 E-value=1.3e-08 Score=77.47 Aligned_cols=157 Identities=13% Similarity=0.004 Sum_probs=132.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAA- 170 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~- 170 (257)
.+...+...|++++|.++|+...+.. +.+...|..+...|...|++++|...|++..+.. +.+..+|..+...+...
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~ 90 (225)
T 2vq2_A 13 QLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRL 90 (225)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhc
Confidence 36778899999999999999988753 3357889999999999999999999999998763 44778899999999985
Q ss_pred cCCcchhHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchh
Q 043311 171 ADGNAKILGDAQKYLMEMVGKGMRPN-AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRG 249 (257)
Q Consensus 171 ~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 249 (257)
|+ +++|..+++.+.+.+..|+ ...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+.+
T Consensus 91 ~~-----~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 91 NR-----PAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp CC-----HHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred Cc-----HHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 54 9999999999987433444 5678888999999999999999999998763 335788889999999999999
Q ss_pred hHHhhhc
Q 043311 250 VINILFG 256 (257)
Q Consensus 250 ~~~~l~~ 256 (257)
.|..+|+
T Consensus 165 ~A~~~~~ 171 (225)
T 2vq2_A 165 DADYYFK 171 (225)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998875
No 32
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.11 E-value=1.6e-08 Score=82.51 Aligned_cols=184 Identities=14% Similarity=-0.009 Sum_probs=146.3
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCC-CcHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLT-NNAV-KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~-~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 140 (257)
..+...|++++|.+.|+.+.+.... +... .+-.++...|++++|...|+...+.. +-+...|..+-..|...|++++
T Consensus 11 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 89 (359)
T 3ieg_A 11 KKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDE 89 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHH
Confidence 4566789999999999999875322 2222 47778889999999999999988752 2356889999999999999999
Q ss_pred HHHHHHHHHHCCCCC----CHHHHHHH------------HHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043311 141 ALRVFMRMLASGVAP----NAYTYAVL------------IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVF 204 (257)
Q Consensus 141 a~~~~~~m~~~g~~~----~~~t~~~l------------l~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 204 (257)
|...|++..+. .| +...+..+ ...+.. .|.+++|.++++...+.. +.+...+..+.
T Consensus 90 A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-----~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 161 (359)
T 3ieg_A 90 AEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFD-----GADYTAAITFLDKILEVC-VWDAELRELRA 161 (359)
T ss_dssp HHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHH-----ccCHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 99999999875 34 44444444 356667 444999999999987642 34677888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 205 EAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 205 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
..+...|++++|...+++..... +.+...+..+...+...|+.+.|...|+
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 212 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVR 212 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999998764 4577888899999999999999988875
No 33
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.09 E-value=1.1e-08 Score=75.42 Aligned_cols=151 Identities=18% Similarity=0.088 Sum_probs=64.0
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcc
Q 043311 96 ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNA 175 (257)
Q Consensus 96 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~ 175 (257)
.+...|++++|.+.|+...+.. +.+...|..+...+...|++++|...|++..+.. +.+...|..+...+...|+
T Consensus 17 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~--- 91 (186)
T 3as5_A 17 SHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQK--- 91 (186)
T ss_dssp HHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC---
T ss_pred HHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcC---
Confidence 3444444444444444443321 1233444444444444444444444444444331 2233444444444444222
Q ss_pred hhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhh
Q 043311 176 KILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILF 255 (257)
Q Consensus 176 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~ 255 (257)
+++|.++++..... .+.+...+..+...+...|++++|.+++++..+.. ..+...+..+...+...|+.+.|..+|
T Consensus 92 --~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 92 --YDLAVPLLIKVAEA-NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp --HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred --HHHHHHHHHHHHhc-CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44444444444332 11233344444444444444444444444444332 123344444444444444444444443
No 34
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.06 E-value=5.9e-10 Score=95.83 Aligned_cols=226 Identities=11% Similarity=-0.009 Sum_probs=166.6
Q ss_pred ccchhhhhhhhcccCCCCccchhhcccCCCCCCcccccc--ccccCCCCHHHHHHHHHHHHhCCCC-CcH-HHHHHHHHh
Q 043311 24 NTRVNATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKK--VVDEEPTDPRNLQEIFHKMRTEGLT-NNA-VKMFDALSK 99 (257)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~--~~~~~~~~~~~a~~~~~~m~~~~~~-p~~-~~ll~~~~~ 99 (257)
...+..........+....+...+.+.....|+...+.. ..+...|+++.|.+.++...+.... +.. ..+...|..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 316 (514)
T 2gw1_A 237 AISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFI 316 (514)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHH
Confidence 334444455556667766666665544334444111221 7778899999999999998875432 222 247778889
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHH
Q 043311 100 DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG 179 (257)
Q Consensus 100 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~ 179 (257)
.|++++|...|+...+.. +.+...|..+...|...|++++|..+|++..+.. +.+..+|..+...+...|+ ++
T Consensus 317 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~-----~~ 389 (514)
T 2gw1_A 317 LQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKND-----FD 389 (514)
T ss_dssp TTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTC-----HH
T ss_pred hCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCC-----HH
Confidence 999999999999988753 2356788889999999999999999999988753 3356788888888988444 99
Q ss_pred HHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhH
Q 043311 180 DAQKYLMEMVGKG-MRPN----AGTYTAVFEAFVR---AQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVI 251 (257)
Q Consensus 180 ~a~~~~~~m~~~g-~~p~----~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~ 251 (257)
+|...|+.+.... -.++ ...|..+...+.. .|++++|...++++.+.. +.+..++..+...+...|+.+.|
T Consensus 390 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A 468 (514)
T 2gw1_A 390 KALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEA 468 (514)
T ss_dssp HHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHH
Confidence 9999998876421 1112 3478888899999 999999999999988753 34677888888899999999999
Q ss_pred HhhhcC
Q 043311 252 NILFGK 257 (257)
Q Consensus 252 ~~l~~k 257 (257)
..+|++
T Consensus 469 ~~~~~~ 474 (514)
T 2gw1_A 469 ITLFEE 474 (514)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888763
No 35
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.05 E-value=1.1e-07 Score=75.24 Aligned_cols=178 Identities=12% Similarity=0.009 Sum_probs=144.5
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSK----DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS---- 134 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~---- 134 (257)
..+...|++++|.+.|+...+.+.......+-..|.. .+++++|.+.|+...+.+ +...+..+-..|..
T Consensus 14 ~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~ 90 (273)
T 1ouv_A 14 AKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGV 90 (273)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSS
T ss_pred HHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCc
Confidence 4566778999999999998885433333356777888 899999999999988875 77888888888988
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----ccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-
Q 043311 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA----AADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVR- 209 (257)
Q Consensus 135 ~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~----~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~- 209 (257)
.+++++|...|++..+.+ +...+..+-..|.. .++ +++|.+.|+...+.+ +...+..+-..|..
T Consensus 91 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~-----~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~ 159 (273)
T 1ouv_A 91 SQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRD-----FKKAVEYFTKACDLN---DGDGCTILGSLYDAG 159 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCC-----HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccC-----HHHHHHHHHHHHhcC---cHHHHHHHHHHHHcC
Confidence 999999999999988875 67788888777776 555 999999999988765 56677778788888
Q ss_pred ---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc----CCchhhHHhhhcC
Q 043311 210 ---AQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRG----QGFRGVINILFGK 257 (257)
Q Consensus 210 ---~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~~~~l~~k 257 (257)
.+++++|...|++..+.+ +...+..+-..+.. .++.+.|...|+|
T Consensus 160 ~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~ 211 (273)
T 1ouv_A 160 RGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSK 211 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHH
Confidence 899999999999998875 45677777778888 8999999888753
No 36
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.03 E-value=3.3e-08 Score=77.78 Aligned_cols=183 Identities=13% Similarity=-0.047 Sum_probs=97.8
Q ss_pred ccCCCCHHHHHHHHHHHHhCCCCCc--HH----HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 043311 65 DEEPTDPRNLQEIFHKMRTEGLTNN--AV----KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQG 138 (257)
Q Consensus 65 ~~~~~~~~~a~~~~~~m~~~~~~p~--~~----~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 138 (257)
....|+++.|.+.|+.+.+.....+ .. .+...+...|++++|...|+...+.. +.+..+|..+-..|...|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCH
Confidence 3344666666666666665422111 11 24555556666666666666655532 12455666666666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 043311 139 KEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218 (257)
Q Consensus 139 ~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 218 (257)
++|...|++..+.. +.+...|..+...+...|+ +++|...|+...+. .|+...+...+..+...|++++|..
T Consensus 94 ~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~-----~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~ 165 (275)
T 1xnf_A 94 DAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGR-----DKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKE 165 (275)
T ss_dssp HHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhcc-----HHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHH
Confidence 66666666665532 2244555666666666333 66666666655542 2333333334444444555555555
Q ss_pred HHHHHHHCC-------------------------------CCCC-----HHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 219 LLQQMKAKG-------------------------------FVPD-----EKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 219 ~~~~m~~~g-------------------------------~~p~-----~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
.+++..... ..|+ ...+..+-..+...|+.+.|..+|+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 239 (275)
T 1xnf_A 166 VLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFK 239 (275)
T ss_dssp HHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 554443321 1111 3556666667777777777777665
No 37
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.03 E-value=3.9e-09 Score=90.69 Aligned_cols=180 Identities=13% Similarity=-0.037 Sum_probs=149.6
Q ss_pred CCCCHHHHHHHHHHHHh-----CCCCCc-------HH----HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043311 67 EPTDPRNLQEIFHKMRT-----EGLTNN-------AV----KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE 130 (257)
Q Consensus 67 ~~~~~~~a~~~~~~m~~-----~~~~p~-------~~----~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 130 (257)
+.|+++.|..+|+.+.+ ..-.|+ .. .+...+...|++++|..+|+...+.. |+...|..+..
T Consensus 201 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~ 278 (514)
T 2gw1_A 201 SPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMAL 278 (514)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHH
Confidence 58999999999999988 322222 11 36778889999999999999998864 44888999999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 043311 131 AYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210 (257)
Q Consensus 131 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 210 (257)
+|...|++++|...|++..+.. +.+...|..+...+...|+ +++|...|+...+.. +.+...+..+...+...
T Consensus 279 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~-----~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 351 (514)
T 2gw1_A 279 IMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQN-----YDQAGKDFDKAKELD-PENIFPYIQLACLAYRE 351 (514)
T ss_dssp HHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTC-----TTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTT
T ss_pred HHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCC-----HHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHc
Confidence 9999999999999999998763 4467889999999999555 999999999988753 23567888899999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 211 QKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 211 ~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
|++++|..+++++.+.. +.+...+..+...+...|+.+.|..+|+
T Consensus 352 ~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 396 (514)
T 2gw1_A 352 NKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYD 396 (514)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999998753 3356788889999999999999998875
No 38
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.02 E-value=8.9e-08 Score=78.01 Aligned_cols=221 Identities=11% Similarity=0.027 Sum_probs=162.6
Q ss_pred hhhhhhhhcccCCCCccchhhcccCCCCC---Cccccc---------------cccccCCCCHHHHHHHHHHHHhCCCC-
Q 043311 27 VNATLQRSLSSSSDQPTKKYVNTKSKLPP---PYDPFK---------------KVVDEEPTDPRNLQEIFHKMRTEGLT- 87 (257)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p---~~~~~~---------------~~~~~~~~~~~~a~~~~~~m~~~~~~- 87 (257)
+..+.......+....+...+.+.....| +..... ...+...|+++.|.+.++.+.+....
T Consensus 74 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 153 (359)
T 3ieg_A 74 RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWD 153 (359)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Confidence 34444445555666666666555555555 221111 14667899999999999999875322
Q ss_pred CcH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH---
Q 043311 88 NNA-VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVL--- 163 (257)
Q Consensus 88 p~~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~l--- 163 (257)
+.. ..+..++...|++++|...|+...+.. +.+..+|..+-..|...|++++|...|++..+.. +.+...+..+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~ 231 (359)
T 3ieg_A 154 AELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQV 231 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHH
Confidence 222 247888899999999999999998763 3467899999999999999999999999998753 2234433322
Q ss_pred ---------HHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 043311 164 ---------IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAG-----TYTAVFEAFVRAQKVDEARGLLQQMKAKGFV 229 (257)
Q Consensus 164 ---------l~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 229 (257)
...+.+ .|.+++|...++...+. .|+.. .+..+-..+.+.|++++|...+++..+.. +
T Consensus 232 ~~~~~~~~~a~~~~~-----~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~ 303 (359)
T 3ieg_A 232 KKLNKLIESAEELIR-----DGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-P 303 (359)
T ss_dssp HHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-c
Confidence 445677 44599999999998864 24432 34556788999999999999999998863 3
Q ss_pred CCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 230 PDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 230 p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
.+...+..+-..+...|+.+.|...|++
T Consensus 304 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 331 (359)
T 3ieg_A 304 DNVNALKDRAEAYLIEEMYDEAIQDYEA 331 (359)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4788999999999999999999988863
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.02 E-value=6.4e-08 Score=74.23 Aligned_cols=160 Identities=18% Similarity=0.020 Sum_probs=132.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcc
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA 171 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~ 171 (257)
.+-..+.+.|++++|...|+...+.. +-+...|..+-.++.+.|++++|...|++..+.. +-+...|..+-..+...+
T Consensus 10 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~ 87 (217)
T 2pl2_A 10 RLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYVALY 87 (217)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhh
Confidence 35667889999999999999988752 2357788899999999999999999999998763 446788888888888830
Q ss_pred CC------cchhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 043311 172 DG------NAKILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRG 244 (257)
Q Consensus 172 ~~------~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 244 (257)
.. ..|++++|...|+...+. .| +...|..+-..+...|++++|...|++..+.. .+...+..+-..+..
T Consensus 88 ~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~ 163 (217)
T 2pl2_A 88 RQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLS 163 (217)
T ss_dssp HTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHH
T ss_pred hhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHH
Confidence 00 006699999999998764 34 46778888899999999999999999999887 788999999999999
Q ss_pred CCchhhHHhhhcC
Q 043311 245 QGFRGVINILFGK 257 (257)
Q Consensus 245 ~g~~~~~~~l~~k 257 (257)
.|+.+.|...|++
T Consensus 164 ~g~~~~A~~~~~~ 176 (217)
T 2pl2_A 164 MGRLDEALAQYAK 176 (217)
T ss_dssp HTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH
Confidence 9999999988763
No 40
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.01 E-value=6.6e-09 Score=89.89 Aligned_cols=218 Identities=11% Similarity=-0.016 Sum_probs=162.9
Q ss_pred hhhcccCCCCccchhhcccCCCCCCcccccc--ccccCCCCHHHHHHHHHHHHhCCCC-CcHH-HHHHHHHhcCChHHHH
Q 043311 32 QRSLSSSSDQPTKKYVNTKSKLPPPYDPFKK--VVDEEPTDPRNLQEIFHKMRTEGLT-NNAV-KMFDALSKDGLTHEAL 107 (257)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~--~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~-~ll~~~~~~~~~~~a~ 107 (257)
......+....+...+.+.....|+...+.. ..+...|+++.|.+.|+...+.... +... .+...+...|++++|.
T Consensus 251 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 330 (537)
T 3fp2_A 251 IFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAK 330 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 3444556666666665554445555233322 7888999999999999999875422 2222 4778889999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHH
Q 043311 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187 (257)
Q Consensus 108 ~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~ 187 (257)
+.|+...+.. +.+...|..+-..|...|++++|...|++..+.. +.+...|..+...+...|+ +++|.+.|+.
T Consensus 331 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~ 403 (537)
T 3fp2_A 331 EDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGD-----FDTAIKQYDI 403 (537)
T ss_dssp HHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTC-----HHHHHHHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCC-----HHHHHHHHHH
Confidence 9999998753 2346789999999999999999999999998763 4467788899999999555 9999999998
Q ss_pred HHhCC-----CCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHH
Q 043311 188 MVGKG-----MRPNAGTYTAVFEAFVRA----------QKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVIN 252 (257)
Q Consensus 188 m~~~g-----~~p~~~~~~~li~~~~~~----------~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~ 252 (257)
..+.. .......+......+... |++++|...|++..+.. +.+...+..+-..+...|+.+.|.
T Consensus 404 a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 482 (537)
T 3fp2_A 404 AKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAI 482 (537)
T ss_dssp HHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHH
Confidence 76421 111222344445667777 99999999999998763 346788889999999999999999
Q ss_pred hhhcC
Q 043311 253 ILFGK 257 (257)
Q Consensus 253 ~l~~k 257 (257)
.+|++
T Consensus 483 ~~~~~ 487 (537)
T 3fp2_A 483 ELFED 487 (537)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88863
No 41
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.01 E-value=5.4e-09 Score=83.71 Aligned_cols=190 Identities=13% Similarity=0.045 Sum_probs=145.4
Q ss_pred ccccCCCCHHHHHHHHHHHHhCC------CCCcHH----HHHHHHHhcCChHHHHHHHHHHHhC------CCCC-CHHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEG------LTNNAV----KMFDALSKDGLTHEALQLFAQIKDK------GHMP-DVVAH 125 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~------~~p~~~----~ll~~~~~~~~~~~a~~~~~~m~~~------g~~p-~~~~~ 125 (257)
..+...|+++.|..+|+.+.+.. ..|... .+-..|...|++++|..+|+...+. +-.| ...+|
T Consensus 35 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 114 (311)
T 3nf1_A 35 IQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATL 114 (311)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 67788999999999999988731 122222 3777888999999999999988754 2223 45688
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhC------C
Q 043311 126 TAVIEAYASAGQGKEALRVFMRMLAS------GV-APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK------G 192 (257)
Q Consensus 126 ~~li~~~~~~~~~~~a~~~~~~m~~~------g~-~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~------g 192 (257)
..+-..|...|++++|...|++..+. +- ......+..+...+...| ++++|.++|+...+. +
T Consensus 115 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~-----~~~~A~~~~~~a~~~~~~~~~~ 189 (311)
T 3nf1_A 115 NNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQG-----KYEEVEYYYQRALEIYQTKLGP 189 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT-----CHHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHhCC
Confidence 89999999999999999999998764 22 234567788888888844 499999999988653 2
Q ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---------------------------------------------
Q 043311 193 MRPN-AGTYTAVFEAFVRAQKVDEARGLLQQMKAK--------------------------------------------- 226 (257)
Q Consensus 193 ~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--------------------------------------------- 226 (257)
..|+ ..++..+...|...|++++|.++++++.+.
T Consensus 190 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 269 (311)
T 3nf1_A 190 DDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKA 269 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-----
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhh
Confidence 2332 346888889999999999999999998852
Q ss_pred ---CCCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 227 ---GFVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 227 ---g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
.-..+..++..+-..+...|+.+.|..+|++
T Consensus 270 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 303 (311)
T 3nf1_A 270 CKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEA 303 (311)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred cCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 1122456677888899999999999998863
No 42
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.99 E-value=1.2e-07 Score=70.37 Aligned_cols=155 Identities=13% Similarity=0.048 Sum_probs=104.4
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCC-CCcH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGL-TNNA-VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~-~p~~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 140 (257)
..+.+.|++++|.+.|++..+..- .+.. ..+-.+|.+.|++++|...+....... .-+...+..+-..+...++++.
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 91 (184)
T 3vtx_A 13 DKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSANFMIDEKQA 91 (184)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHcCCHHH
Confidence 455667788888888887776421 1111 135667777888888888777776542 2245566666677777788888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 043311 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220 (257)
Q Consensus 141 a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 220 (257)
+...+.+..+.. +-+...+..+-..+.+.|+ +++|.+.|++..+.. +-+...|..+-..|.+.|++++|.+.|
T Consensus 92 a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~-----~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 164 (184)
T 3vtx_A 92 AIDALQRAIALN-TVYADAYYKLGLVYDSMGE-----HDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVKYF 164 (184)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhC-ccchHHHHHHHHHHHHhCC-----chhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 888887776642 3356677777777777444 888888887776531 224566777777788888888888888
Q ss_pred HHHHH
Q 043311 221 QQMKA 225 (257)
Q Consensus 221 ~~m~~ 225 (257)
++..+
T Consensus 165 ~~al~ 169 (184)
T 3vtx_A 165 KKALE 169 (184)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 87765
No 43
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.97 E-value=1e-07 Score=70.03 Aligned_cols=156 Identities=10% Similarity=0.066 Sum_probs=127.5
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcH--HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNA--VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 140 (257)
..+...|++++|.+.++.+.+....... ..+...+...|++++|.++|+...+.. +.+...|..+...+...|++++
T Consensus 16 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~ 94 (186)
T 3as5_A 16 ISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQKYDL 94 (186)
T ss_dssp HHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHH
Confidence 4566789999999999988764322111 247778899999999999999988752 3467889999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 043311 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLL 220 (257)
Q Consensus 141 a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 220 (257)
|...|++..+.. +.+...+..+...+...|+ +++|.++++...+.. +.+...+..+...+...|++++|.+.+
T Consensus 95 A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~-----~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 95 AVPLLIKVAEAN-PINFNVRFRLGVALDNLGR-----FDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCc-----HHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999998763 4578888899999999554 999999999987642 335688999999999999999999999
Q ss_pred HHHHHC
Q 043311 221 QQMKAK 226 (257)
Q Consensus 221 ~~m~~~ 226 (257)
++..+.
T Consensus 168 ~~~~~~ 173 (186)
T 3as5_A 168 KKANEL 173 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 998754
No 44
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.97 E-value=1.4e-08 Score=79.93 Aligned_cols=182 Identities=13% Similarity=-0.013 Sum_probs=96.8
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCC-CcH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLT-NNA-VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~-p~~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 140 (257)
..+...|++++|...|+...+.... +.. ..+...|...|++++|.+.|+...+.. +.+...|..+-.+|.+.|++++
T Consensus 51 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~ 129 (275)
T 1xnf_A 51 VLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKL 129 (275)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHH
Confidence 4455566666666666665553211 111 134555566666666666666655531 1234556666666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC----------------------------CcchhHHHHHHHHHHHHhCC
Q 043311 141 ALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD----------------------------GNAKILGDAQKYLMEMVGKG 192 (257)
Q Consensus 141 a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~----------------------------~~~~~~~~a~~~~~~m~~~g 192 (257)
|...|+++.+. .|+...+...+..+...|+ ...+..+.|...++.....
T Consensus 130 A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~- 206 (275)
T 1xnf_A 130 AQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATD- 206 (275)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCS-
T ss_pred HHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcc-
Confidence 66666666543 2332222223333333111 0011134444444443322
Q ss_pred CCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHh
Q 043311 193 MRPN-----AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINI 253 (257)
Q Consensus 193 ~~p~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~ 253 (257)
.|+ ...|..+...|.+.|++++|...|++..... |+. +.....++...|..+.+..
T Consensus 207 -~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~ 267 (275)
T 1xnf_A 207 -NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQD 267 (275)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC--
T ss_pred -cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHH
Confidence 121 4678888899999999999999999998753 532 2222345556666665544
No 45
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.96 E-value=1.7e-07 Score=75.68 Aligned_cols=176 Identities=11% Similarity=0.001 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHhCCCCCcH----HHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHHhcCChHHHHHHH
Q 043311 72 RNLQEIFHKMRTEGLTNNA----VKMFDALSKDGLTHEALQLFAQIKDKGHMPD-VV-AHTAVIEAYASAGQGKEALRVF 145 (257)
Q Consensus 72 ~~a~~~~~~m~~~~~~p~~----~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~-~~~~li~~~~~~~~~~~a~~~~ 145 (257)
++|..+|++..+. +.|+. ..+...+.+.|++++|..+|+...+. .|+ .. .|..+...+.+.|++++|..+|
T Consensus 81 ~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~ 157 (308)
T 2ond_A 81 DEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHH
Confidence 8999999998873 12332 24677788899999999999999874 454 33 7999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043311 146 MRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225 (257)
Q Consensus 146 ~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 225 (257)
++..+.+ +.+...|.......... .|..+.|.++|+...+. .+-+...|..++..+.+.|+.++|..+|++...
T Consensus 158 ~~a~~~~-p~~~~~~~~~a~~~~~~----~~~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 231 (308)
T 2ond_A 158 KKAREDA-RTRHHVYVTAALMEYYC----SKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 231 (308)
T ss_dssp HHHHTST-TCCTHHHHHHHHHHHHT----SCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 9988763 33445554333332210 24489999999987753 123567888889999999999999999999998
Q ss_pred CC-CCC--CHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 226 KG-FVP--DEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 226 ~g-~~p--~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
.. +.| +...|..++......|+.+.+..+++
T Consensus 232 ~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 232 SGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp SSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 73 455 46778888888888999998888765
No 46
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.95 E-value=2.6e-08 Score=77.46 Aligned_cols=158 Identities=11% Similarity=0.064 Sum_probs=130.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCC----HHHHHHHHH
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG--VAPN----AYTYAVLIK 165 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~~~----~~t~~~ll~ 165 (257)
.+-..+...|++++|..+|+...+.. .+...|..+-.+|...|++++|...|++..+.. ..++ ..+|..+..
T Consensus 10 ~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 87 (258)
T 3uq3_A 10 AEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGN 87 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHH
Confidence 35678889999999999999998876 788999999999999999999999999988642 1222 588888999
Q ss_pred HHHhccCCcchhHHHHHHHHHHHHhCC------------------------CCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 043311 166 GLAAAADGNAKILGDAQKYLMEMVGKG------------------------MRP-NAGTYTAVFEAFVRAQKVDEARGLL 220 (257)
Q Consensus 166 ~~~~~~~~~~~~~~~a~~~~~~m~~~g------------------------~~p-~~~~~~~li~~~~~~~~~~~a~~~~ 220 (257)
.+...|+ +++|...|+...... ..| +...|..+...+...|++++|...|
T Consensus 88 ~~~~~~~-----~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 162 (258)
T 3uq3_A 88 AYHKLGD-----LKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAY 162 (258)
T ss_dssp HHHHTTC-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHccc-----HHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999555 888888888877521 223 3456778888999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 221 QQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 221 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
++..+.. +.+...+..+-..+...|+.+.|...|++
T Consensus 163 ~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 198 (258)
T 3uq3_A 163 TEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNK 198 (258)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9998764 34678899999999999999999988753
No 47
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.94 E-value=9.4e-08 Score=82.19 Aligned_cols=188 Identities=11% Similarity=-0.048 Sum_probs=151.2
Q ss_pred ccccCCCCH-HHHHHHHHHHHhCCCC-CcH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----
Q 043311 63 VVDEEPTDP-RNLQEIFHKMRTEGLT-NNA-VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASA---- 135 (257)
Q Consensus 63 ~~~~~~~~~-~~a~~~~~~m~~~~~~-p~~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~---- 135 (257)
..+...|++ ++|.+.|++..+..-. +.. ..+-.+|.+.|++++|.+.|+...+. .|+...|..+-..|...
T Consensus 110 ~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~ 187 (474)
T 4abn_A 110 KALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSMVLRQLQTDS 187 (474)
T ss_dssp HHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSC
T ss_pred HHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHhccCC
Confidence 778889999 9999999998875322 222 24778889999999999999999885 47778899999999999
Q ss_pred -----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----cCCcchhHHHHHHHHHHHHhCCCCC----CHHHHHH
Q 043311 136 -----GQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAA----ADGNAKILGDAQKYLMEMVGKGMRP----NAGTYTA 202 (257)
Q Consensus 136 -----~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~----~~~~~~~~~~a~~~~~~m~~~g~~p----~~~~~~~ 202 (257)
|++++|...|++..+.. +-+...|..+-..|... +. +.|++++|.+.|+...+. .| +...|..
T Consensus 188 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~-~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~ 263 (474)
T 4abn_A 188 GDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQ-NPKISQQALSAYAQAEKV--DRKASSNPDLHLN 263 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHH--CGGGGGCHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHh--CCCcccCHHHHHH
Confidence 99999999999988763 34678888888888773 11 126699999999998864 34 6788999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 203 VFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 203 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
+-..|...|++++|.+.|++..+.. +-+...+..+-..+...|..+.+...++|
T Consensus 264 lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 264 RATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999998753 23566777888888888888888776543
No 48
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.93 E-value=1.5e-08 Score=79.77 Aligned_cols=185 Identities=10% Similarity=-0.044 Sum_probs=126.6
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcH-----HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNA-----VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ 137 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 137 (257)
..+...|+++.|.+.++...+.+-.+.. ..+-..+.+.|++++|.+.|+...+.. +.+..+|..+-..|...|+
T Consensus 45 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~ 123 (272)
T 3u4t_A 45 VCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGN 123 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccC
Confidence 6677788888888888888774433332 246677778888888888888777642 2245678888888888888
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhccCCcchhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCC---
Q 043311 138 GKEALRVFMRMLASGVAPNAYTYAVLI-KGLAAAADGNAKILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQK--- 212 (257)
Q Consensus 138 ~~~a~~~~~~m~~~g~~~~~~t~~~ll-~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~--- 212 (257)
+++|...|++..+.. +.+...|..+- ..+.. + .+++|.+.|+...+. .| +...+..+...+...|+
T Consensus 124 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~-~-----~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~ 194 (272)
T 3u4t_A 124 FPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYN-K-----EYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTK 194 (272)
T ss_dssp HHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHT-T-----CHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCS
T ss_pred HHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHH-H-----HHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchh
Confidence 888888888777652 33556666665 44433 2 488888888887753 23 35666667777777777
Q ss_pred HHHHHHHHHHHHHC-CCCCC------HHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 213 VDEARGLLQQMKAK-GFVPD------EKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 213 ~~~a~~~~~~m~~~-g~~p~------~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
+++|...+++..+. .-.|+ ...+..+-..+...|+.+.|..+|+|
T Consensus 195 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 246 (272)
T 3u4t_A 195 QGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKN 246 (272)
T ss_dssp SCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77777777777654 12233 24666677778888888888887753
No 49
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=98.93 E-value=1.7e-07 Score=73.72 Aligned_cols=185 Identities=8% Similarity=-0.010 Sum_probs=141.0
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCC-CC-cHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCh
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGL-TN-NAVKMFDALSKDGLTHEALQLFAQIKDKGHMPD--VVAHTAVIEAYASAGQG 138 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~-~p-~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~~~~ 138 (257)
..+...|+++.|...|+...+..- .+ ....+..+|...|++++|.+.|+...+.+..++ ...|..+-..|...|++
T Consensus 11 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~ 90 (272)
T 3u4t_A 11 DFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQD 90 (272)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccH
Confidence 566789999999999999988532 23 233577899999999999999999988542232 23488999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 043311 139 KEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQKVDEAR 217 (257)
Q Consensus 139 ~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~ 217 (257)
++|...|++..+.. +.+..+|..+-..+...|+ +++|.+.|+...+. .| +...|..+-..+...+++++|.
T Consensus 91 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~-----~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 91 SLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGN-----FPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTC-----HHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccC-----HHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998763 3366889999999999555 99999999988765 34 4455665553555566999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhhcCCc---hhhHHhhhc
Q 043311 218 GLLQQMKAKGFVPDEKAVKEALIDKRGQGF---RGVINILFG 256 (257)
Q Consensus 218 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~---~~~~~~l~~ 256 (257)
+.|++..+.. +.+...+..+-..+...|. .+.|...|+
T Consensus 163 ~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 203 (272)
T 3u4t_A 163 SSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYE 203 (272)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHH
T ss_pred HHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHH
Confidence 9999998753 2336666667777777776 555665553
No 50
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.92 E-value=4.4e-09 Score=82.87 Aligned_cols=189 Identities=13% Similarity=0.062 Sum_probs=139.1
Q ss_pred cccCCCCHHHHHHHHHHHHhC-----C-CCCcHH----HHHHHHHhcCChHHHHHHHHHHHhC------CCCC-CHHHHH
Q 043311 64 VDEEPTDPRNLQEIFHKMRTE-----G-LTNNAV----KMFDALSKDGLTHEALQLFAQIKDK------GHMP-DVVAHT 126 (257)
Q Consensus 64 ~~~~~~~~~~a~~~~~~m~~~-----~-~~p~~~----~ll~~~~~~~~~~~a~~~~~~m~~~------g~~p-~~~~~~ 126 (257)
.....|+++.|...|++..+. + -.|... .+-..|...|++++|...|++..+. +-.| ...+|.
T Consensus 10 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 89 (283)
T 3edt_B 10 HSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLN 89 (283)
T ss_dssp ---CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 445678888888888777762 1 123322 3777888999999999999988754 2223 356889
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHC------C-CCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhC------CC
Q 043311 127 AVIEAYASAGQGKEALRVFMRMLAS------G-VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK------GM 193 (257)
Q Consensus 127 ~li~~~~~~~~~~~a~~~~~~m~~~------g-~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~------g~ 193 (257)
.+-..|...|++++|...|++..+. . -+....+|..+-..+...|+ +++|..+|++..+. +-
T Consensus 90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-----~~~A~~~~~~al~~~~~~~~~~ 164 (283)
T 3edt_B 90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGK-----AEEVEYYYRRALEIYATRLGPD 164 (283)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC-----HHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999988754 1 12346778888888888444 99999999887653 11
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----------------------------------------------
Q 043311 194 RP-NAGTYTAVFEAFVRAQKVDEARGLLQQMKAK---------------------------------------------- 226 (257)
Q Consensus 194 ~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------------------------------------------- 226 (257)
.| ...++..+-..|...|++++|..++++..+.
T Consensus 165 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (283)
T 3edt_B 165 DPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKAC 244 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CC
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc
Confidence 23 3457888889999999999999999998753
Q ss_pred --CCCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 227 --GFVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 227 --g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
.-.....++..+-..+...|+.+.|..+|++
T Consensus 245 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 277 (283)
T 3edt_B 245 KVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDC 277 (283)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1122345677788889999999999998863
No 51
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.92 E-value=7.4e-08 Score=83.26 Aligned_cols=179 Identities=10% Similarity=-0.004 Sum_probs=145.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCcH---------HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 043311 69 TDPRNLQEIFHKMRTEGLTNNA---------VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGK 139 (257)
Q Consensus 69 ~~~~~a~~~~~~m~~~~~~p~~---------~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 139 (257)
|+++.|..+|+.+.+....... ..+-..+...|++++|.+.|+...+. .|+...|..+-..|...|+++
T Consensus 216 ~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~ 293 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQ 293 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCH
T ss_pred HHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHH
Confidence 4788999999998875432211 12456778899999999999999885 466888999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 043311 140 EALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGL 219 (257)
Q Consensus 140 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~ 219 (257)
+|...|++..+.. +.+..+|..+...+...|+ +++|.+.|+...+.. +-+...|..+...+...|++++|..+
T Consensus 294 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~-----~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~ 366 (537)
T 3fp2_A 294 EFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQD-----YKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAF 366 (537)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999998764 4468889999999999554 999999999988642 22467888999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 220 LQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 220 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
++++.+.. +.+...+..+-..+...|+.+.|...|++
T Consensus 367 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 403 (537)
T 3fp2_A 367 FNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDI 403 (537)
T ss_dssp HHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99998764 34567888889999999999999988753
No 52
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.90 E-value=1.9e-07 Score=64.62 Aligned_cols=127 Identities=18% Similarity=0.189 Sum_probs=101.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcc
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA 171 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~ 171 (257)
.+...+...|++++|..+|+.+.+.. +.+...|..+...+...|++++|..+|+++.+.+ +.+...|..+...+...|
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHhc
Confidence 35677888899999999999887653 2357788888888999999999999999988764 446778888888888844
Q ss_pred CCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 043311 172 DGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK 226 (257)
Q Consensus 172 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 226 (257)
+ +++|.++++.+.... +.+...+..+...+.+.|++++|...++++...
T Consensus 84 ~-----~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 84 D-----YDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp C-----HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred C-----HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 4 999999998887642 335677888889999999999999999988764
No 53
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.85 E-value=6.7e-07 Score=66.15 Aligned_cols=157 Identities=14% Similarity=0.118 Sum_probs=130.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcc
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA 171 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~ 171 (257)
.+-..|.+.|++++|.+.|++..+.. +-+...|..+-.+|.+.|++++|...+....... +-+...+..+-..+...+
T Consensus 10 ~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 87 (184)
T 3vtx_A 10 DIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSANFMID 87 (184)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHcC
Confidence 46678899999999999999988752 2367789999999999999999999999988764 346677777777788844
Q ss_pred CCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhH
Q 043311 172 DGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVI 251 (257)
Q Consensus 172 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~ 251 (257)
+ ++.+...+....... +-+...+..+-..|.+.|++++|.+.|++..+.. +-+...+..+-..+...|+.+.|
T Consensus 88 ~-----~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 88 E-----KQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp C-----HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred C-----HHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 4 999999998877642 3356788888999999999999999999998764 34678899999999999999999
Q ss_pred HhhhcC
Q 043311 252 NILFGK 257 (257)
Q Consensus 252 ~~l~~k 257 (257)
...|+|
T Consensus 161 ~~~~~~ 166 (184)
T 3vtx_A 161 VKYFKK 166 (184)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998864
No 54
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.85 E-value=2.2e-07 Score=64.27 Aligned_cols=126 Identities=16% Similarity=0.075 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHH
Q 043311 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTA 202 (257)
Q Consensus 123 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 202 (257)
..|..+...+...|++++|..+|+++.+.+ +.+...|..+...+...| +++.|..+++.+...+ +.+...+..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~-----~~~~A~~~~~~~~~~~-~~~~~~~~~ 74 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQG-----DYDEAIEYYQKALELD-PRSAEAWYN 74 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT-----CHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhc-----CHHHHHHHHHHHHHHC-CCchHHHHH
Confidence 357788889999999999999999998764 347788888888888844 4999999999987643 335678888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 203 VFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 203 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
+...+...|++++|.++++++.... ..+...+..+...+...|+.+.|..+|+
T Consensus 75 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 75 LGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 9999999999999999999998764 3467788889999999999999998875
No 55
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.81 E-value=4.7e-07 Score=77.78 Aligned_cols=182 Identities=13% Similarity=0.000 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHHhCCCCCcHH---HHHHHHHhcCCh-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 043311 71 PRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLT-HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFM 146 (257)
Q Consensus 71 ~~~a~~~~~~m~~~~~~p~~~---~ll~~~~~~~~~-~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 146 (257)
++.+.+.+........ .+.. .+-..|...|++ ++|.+.|++..+.. +-+...|..+-.+|.+.|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5566666665554322 1221 356677889999 99999999988752 2247899999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhccCCcc----hhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc--------CCHH
Q 043311 147 RMLASGVAPNAYTYAVLIKGLAAAADGNA----KILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA--------QKVD 214 (257)
Q Consensus 147 ~m~~~g~~~~~~t~~~ll~~~~~~~~~~~----~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~--------~~~~ 214 (257)
+..+. .|+...|..+-..+...+.... |++++|.+.|++..+.. +-+...|..+-..|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 99875 5777888888888888411001 66999999999987642 23567888899999988 9999
Q ss_pred HHHHHHHHHHHCCC--CCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 215 EARGLLQQMKAKGF--VPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 215 ~a~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
+|...|++..+..- .-+...+..+-..+...|+.+.|...|++
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 283 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQ 283 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999998531 03788999999999999999999988863
No 56
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.77 E-value=2.7e-06 Score=68.60 Aligned_cols=176 Identities=11% Similarity=0.035 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHhC-CCCCcHH-HHHHHHH-------hcCCh-------HHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 043311 72 RNLQEIFHKMRTE-GLTNNAV-KMFDALS-------KDGLT-------HEALQLFAQIKDKGHMP-DVVAHTAVIEAYAS 134 (257)
Q Consensus 72 ~~a~~~~~~m~~~-~~~p~~~-~ll~~~~-------~~~~~-------~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~ 134 (257)
++|..+|++.... +..|+.. .+...+. +.|++ ++|..+|+...+. +.| +...|..+...+.+
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHh
Confidence 6888899988873 3334333 2333333 45886 8999999999884 234 56689999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HcC
Q 043311 135 AGQGKEALRVFMRMLASGVAPN-AY-TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFV-RAQ 211 (257)
Q Consensus 135 ~~~~~~a~~~~~~m~~~g~~~~-~~-t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~-~~~ 211 (257)
.|++++|..+|++..+. .|+ .. .|..+...+.+ .|.+++|..+|+...+.. +++...|........ ..|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~-----~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~ 183 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARR-----AEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSK 183 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHH-----HHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSC
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHH-----hcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcC
Confidence 99999999999999974 454 33 89999998888 455999999999988753 234445544433322 269
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 212 KVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 212 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
+.++|..+|++..+.. +-+...+..+...+.+.|+.+.|..+|++
T Consensus 184 ~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 228 (308)
T 2ond_A 184 DKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFER 228 (308)
T ss_dssp CHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999998752 23678888999999999999999999864
No 57
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.72 E-value=1.3e-06 Score=78.72 Aligned_cols=152 Identities=14% Similarity=0.076 Sum_probs=74.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcc
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMP-DVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA 171 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~ 171 (257)
+-..|.+.|++++|.+.|++..+. .| +...|+.+=.+|.+.|++++|...|++..+.+ +-+...|..+-..+...|
T Consensus 15 LG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l~~~g 91 (723)
T 4gyw_A 15 LANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQ 91 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 334445555555555555555442 23 23455555555555555555555555554431 123445555555555522
Q ss_pred CCcchhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhh
Q 043311 172 DGNAKILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGV 250 (257)
Q Consensus 172 ~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 250 (257)
+ +++|.+.|++..+. .| +...|+.+-..|...|++++|.+.|++..+.. .-+...+..+...+...|+.+.
T Consensus 92 ~-----~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 92 D-----VQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp C-----HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred C-----HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence 2 55555555554432 22 23445555555555555555555555555432 1134445555555555555555
Q ss_pred HHhhh
Q 043311 251 INILF 255 (257)
Q Consensus 251 ~~~l~ 255 (257)
|++.|
T Consensus 164 A~~~~ 168 (723)
T 4gyw_A 164 YDERM 168 (723)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54444
No 58
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.71 E-value=2.4e-07 Score=74.05 Aligned_cols=161 Identities=15% Similarity=0.035 Sum_probs=125.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------C-CCCCH
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDK-------GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS------G-VAPNA 157 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g-~~~~~ 157 (257)
.+...+...|++++|..+|++..+. .......++..+-..|...|++++|...|++..+. + .....
T Consensus 32 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 111 (311)
T 3nf1_A 32 NLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVA 111 (311)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHH
Confidence 3677888999999999999998763 22334567888999999999999999999998754 2 23345
Q ss_pred HHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----
Q 043311 158 YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK------GMRP-NAGTYTAVFEAFVRAQKVDEARGLLQQMKAK---- 226 (257)
Q Consensus 158 ~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~------g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---- 226 (257)
.+|..+...+...|+ +++|..+|++..+. +-.| ....+..+-..+...|++++|.+++++..+.
T Consensus 112 ~~~~~l~~~~~~~g~-----~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 112 ATLNNLAVLYGKRGK-----YKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp HHHHHHHHHHHTTTC-----HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCc-----HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 778888888888544 99999999987753 2223 3456888889999999999999999999864
Q ss_pred --CCCC-CHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 227 --GFVP-DEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 227 --g~~p-~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
+-.| ...++..+...+...|+.+.|..+|++
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 220 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKE 220 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2233 345677788889999999999988753
No 59
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.71 E-value=1.4e-06 Score=66.78 Aligned_cols=85 Identities=12% Similarity=-0.037 Sum_probs=39.7
Q ss_pred cccCCCCHHHHHHHHHHHHhCCCCCcHH---HHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChH
Q 043311 64 VDEEPTDPRNLQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGHMP-DVVAHTAVIEAYASAGQGK 139 (257)
Q Consensus 64 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~ll~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~ 139 (257)
.+...|++++|.+.|....+..-.++.. .+-.++.+.|++++|.+.|+...+. .| +...|..+-.+|...|+++
T Consensus 16 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~ 93 (228)
T 4i17_A 16 DALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKSAAYRDMKNNQ 93 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHcccHH
Confidence 3444555555555555555433212211 1334444555555555555555442 12 2334445555555555555
Q ss_pred HHHHHHHHHHH
Q 043311 140 EALRVFMRMLA 150 (257)
Q Consensus 140 ~a~~~~~~m~~ 150 (257)
+|...|++..+
T Consensus 94 ~A~~~~~~al~ 104 (228)
T 4i17_A 94 EYIATLTEGIK 104 (228)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555444
No 60
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.64 E-value=4.2e-06 Score=72.68 Aligned_cols=179 Identities=11% Similarity=0.013 Sum_probs=135.6
Q ss_pred CCCHH-------HHHHHHHHHHhCCCCCcHH----HHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHh
Q 043311 68 PTDPR-------NLQEIFHKMRTEGLTNNAV----KMFDALSKDGLTHEALQLFAQIKDKGHMPD--VVAHTAVIEAYAS 134 (257)
Q Consensus 68 ~~~~~-------~a~~~~~~m~~~~~~p~~~----~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~ 134 (257)
.|+++ +|..+|++..+. +.|+.. .+...+.+.|++++|..+|+...+. .|+ ...|......+.+
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~-~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~ 368 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARR 368 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTT-TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHH
Confidence 68877 899999998862 234422 4677788899999999999999984 454 3589999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 043311 135 AGQGKEALRVFMRMLASGVAPNAYTYAVLIKG-LAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV 213 (257)
Q Consensus 135 ~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~-~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 213 (257)
.|++++|..+|++..+.. +.+...|...... +...| ..+.|..+|+...+.. +-+...|..++..+.+.|+.
T Consensus 369 ~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~-----~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~ 441 (530)
T 2ooe_A 369 AEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSK-----DKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNED 441 (530)
T ss_dssp HHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTC-----CHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCH
T ss_pred hcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcC-----ChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCH
Confidence 999999999999988752 2223333322222 22433 4999999999877531 23578899999999999999
Q ss_pred HHHHHHHHHHHHCC-CCCC--HHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 214 DEARGLLQQMKAKG-FVPD--EKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 214 ~~a~~~~~~m~~~g-~~p~--~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
++|..+|++....+ ..|+ ...|...+.-....|+.+.+..++.
T Consensus 442 ~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~ 487 (530)
T 2ooe_A 442 NNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 487 (530)
T ss_dssp HHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred hhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999874 3332 5578888888888999999888764
No 61
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.64 E-value=4e-07 Score=71.51 Aligned_cols=158 Identities=16% Similarity=0.126 Sum_probs=122.0
Q ss_pred ccccCCCCHHHHHHHHHHHHhC------CCCCcHH----HHHHHHHhcCChHHHHHHHHHHHhC------CCCC-CHHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTE------GLTNNAV----KMFDALSKDGLTHEALQLFAQIKDK------GHMP-DVVAH 125 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~------~~~p~~~----~ll~~~~~~~~~~~a~~~~~~m~~~------g~~p-~~~~~ 125 (257)
..+...|+++.|...+....+. +-.|... .+-.+|...|++++|.+.|.+..+. .-.| ...+|
T Consensus 51 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 130 (283)
T 3edt_B 51 LVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQL 130 (283)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Confidence 7778899999999999988864 3334332 3778889999999999999988754 1123 35688
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhC------C
Q 043311 126 TAVIEAYASAGQGKEALRVFMRMLAS------GVAP-NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK------G 192 (257)
Q Consensus 126 ~~li~~~~~~~~~~~a~~~~~~m~~~------g~~~-~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~------g 192 (257)
..+-..|...|++++|...|++..+. +-.| ...++..+...+...|+ +++|..+|++..+. +
T Consensus 131 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-----~~~A~~~~~~~l~~~~~~~~~ 205 (283)
T 3edt_B 131 NNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGK-----YQDAETLYKEILTRAHEKEFG 205 (283)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHhcCC
Confidence 88999999999999999999998764 1122 45778888889998444 99999998877642 0
Q ss_pred -----------------------------------------CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043311 193 -----------------------------------------MRP-NAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225 (257)
Q Consensus 193 -----------------------------------------~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 225 (257)
..| ...++..+...|...|++++|..+|++..+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 206 SVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp SCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 112 234678888999999999999999998765
No 62
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.61 E-value=2.1e-06 Score=69.07 Aligned_cols=174 Identities=13% Similarity=0.062 Sum_probs=124.2
Q ss_pred HHHHHHHHHhCCCCCcHH---HHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043311 74 LQEIFHKMRTEGLTNNAV---KMFDALSKDGLTHEALQLFAQIKDKGH-MPDVVAHTAVIEAYASAGQGKEALRVFMRML 149 (257)
Q Consensus 74 a~~~~~~m~~~~~~p~~~---~ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 149 (257)
+...+++....+ .++.. .+-.++...|++++|++++......+- .-+...+-.++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455566555544 22222 366778889999999999998866543 2367889999999999999999999999998
Q ss_pred HCCCCC-----CHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043311 150 ASGVAP-----NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMK 224 (257)
Q Consensus 150 ~~g~~~-----~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 224 (257)
+. .| +..+...+..++.....+ .+....|..+|+++.+. .|+..+-..++.++.+.|++++|++.++.+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g-~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATN-KETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHT-CSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 74 66 367777777775443221 23589999999999765 4664455556668999999999999999776
Q ss_pred HC-----CC----CCCHHHHHHHHHHhhcCCchhhHHhhh
Q 043311 225 AK-----GF----VPDEKAVKEALIDKRGQGFRGVINILF 255 (257)
Q Consensus 225 ~~-----g~----~p~~~t~~~ll~~~~~~g~~~~~~~l~ 255 (257)
+. +. .-|..++..+|......|+ .+.+++
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~ 276 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLT 276 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHH
Confidence 53 11 3356666577766666676 555554
No 63
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.61 E-value=9.9e-06 Score=70.34 Aligned_cols=176 Identities=11% Similarity=0.029 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHhC-CCCCcHH-HHHHHHHh-------cCChH-------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 043311 72 RNLQEIFHKMRTE-GLTNNAV-KMFDALSK-------DGLTH-------EALQLFAQIKDKGHMPDVVAHTAVIEAYASA 135 (257)
Q Consensus 72 ~~a~~~~~~m~~~-~~~p~~~-~ll~~~~~-------~~~~~-------~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 135 (257)
+.+..+|++.... +..|... .....+.+ .|+++ +|..+|+...+.-.+-+...|..+...+.+.
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 3666778777763 2233332 23444443 68887 8999999988632233588999999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCC-HHHHHHHHHH-HHHcC
Q 043311 136 GQGKEALRVFMRMLASGVAPN--AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN-AGTYTAVFEA-FVRAQ 211 (257)
Q Consensus 136 ~~~~~a~~~~~~m~~~g~~~~--~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~-~~~~~ 211 (257)
|++++|..+|++..+. .|+ ...|......+.+ .|.++.|.++|+...+. .|+ ...|...... +...|
T Consensus 335 g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~-----~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~ 405 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARR-----AEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSK 405 (530)
T ss_dssp TCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHH-----hcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcC
Confidence 9999999999999984 554 3588888888888 55599999999998864 232 2333322222 34689
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 212 KVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 212 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
+.++|..+|++..+.. +-+...+..++....+.|+.+.|..+|++
T Consensus 406 ~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~ 450 (530)
T 2ooe_A 406 DKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFER 450 (530)
T ss_dssp CHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHH
Confidence 9999999999998753 23578899999999999999999999864
No 64
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.55 E-value=9.6e-07 Score=73.73 Aligned_cols=214 Identities=9% Similarity=-0.027 Sum_probs=141.7
Q ss_pred cCCCCccchhhcccCCCCCCcccccc---ccccCCCC-HHHHHHHHHHHHhCCCC-CcH-HHHHHHHHhcCChHHHHHHH
Q 043311 37 SSSDQPTKKYVNTKSKLPPPYDPFKK---VVDEEPTD-PRNLQEIFHKMRTEGLT-NNA-VKMFDALSKDGLTHEALQLF 110 (257)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~p~~~~~~~---~~~~~~~~-~~~a~~~~~~m~~~~~~-p~~-~~ll~~~~~~~~~~~a~~~~ 110 (257)
.+....+...+.+.-.+.|+....-. .++...|+ +++|...|++..+..-. +.. ..+-.++.+.|++++|+..|
T Consensus 110 ~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~ 189 (382)
T 2h6f_A 110 DERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFI 189 (382)
T ss_dssp TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHH
T ss_pred CCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHH
Confidence 34444444555554455565433322 66667785 88888888888874322 122 13566677788888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCC-cchhHHHHHHHHHHHH
Q 043311 111 AQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADG-NAKILGDAQKYLMEMV 189 (257)
Q Consensus 111 ~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~-~~~~~~~a~~~~~~m~ 189 (257)
+...+.. .-+...|..+-.++.+.|++++|+..|+++.+.+ +-+...|+.+-..+...++. +...++.+.+.|+...
T Consensus 190 ~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al 267 (382)
T 2h6f_A 190 ADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMI 267 (382)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHH
T ss_pred HHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHH
Confidence 8887742 2256788888888888899999999998888764 33677888888877773331 2222233356677665
Q ss_pred hCCCCC-CHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC--------c-hhhHHhhhc
Q 043311 190 GKGMRP-NAGTYTAVFEAFVRAQ--KVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG--------F-RGVINILFG 256 (257)
Q Consensus 190 ~~g~~p-~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g--------~-~~~~~~l~~ 256 (257)
.. .| +...|+.+-..+...| ++++|.+.+.++ ..-..+...+..+...+...| + .+.|..+|+
T Consensus 268 ~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~--~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~ 342 (382)
T 2h6f_A 268 KL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL--QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCE 342 (382)
T ss_dssp HH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH--TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh--ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence 42 34 4567888888888877 688999998887 323445677777777777764 2 467777665
No 65
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.55 E-value=4.2e-05 Score=65.70 Aligned_cols=149 Identities=12% Similarity=0.078 Sum_probs=64.3
Q ss_pred CCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChH
Q 043311 68 PTDPRNLQEIFHKMRTEGLTNNAVKMFDALSK----DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS----AGQGK 139 (257)
Q Consensus 68 ~~~~~~a~~~~~~m~~~~~~p~~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~ 139 (257)
.++++.|...|+...+.|..+-...|-..|.. .++.++|.+.|+...+.| +...+..|=..|.. .++++
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 45555555555555554332222233344444 455555555555554433 33344444444444 44555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHH
Q 043311 140 EALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVR----AQKVDE 215 (257)
Q Consensus 140 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~~ 215 (257)
+|..+|++..+.| +...+..+-..|.. |.+..+..++|.+.|+...+.| +...+..|-..|.. .++.++
T Consensus 133 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~-g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~ 205 (490)
T 2xm6_A 133 ESVKWFRLAAEQG---RDSGQQSMGDAYFE-GDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAI 205 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHH-TSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHc-CCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHH
Confidence 5555555544443 23333333333332 1111122444444444444332 33344444444443 444444
Q ss_pred HHHHHHHHHHC
Q 043311 216 ARGLLQQMKAK 226 (257)
Q Consensus 216 a~~~~~~m~~~ 226 (257)
|.+.|++..+.
T Consensus 206 A~~~~~~a~~~ 216 (490)
T 2xm6_A 206 SAQWYRKSATS 216 (490)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHC
Confidence 44444444443
No 66
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.54 E-value=4.1e-05 Score=65.76 Aligned_cols=176 Identities=12% Similarity=0.078 Sum_probs=117.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----CCh
Q 043311 68 PTDPRNLQEIFHKMRTEGLTNNAVKMFDALSK----DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASA-----GQG 138 (257)
Q Consensus 68 ~~~~~~a~~~~~~m~~~~~~p~~~~ll~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-----~~~ 138 (257)
.++++.|.++|+...+.|.......+-..|.. .++.++|.+.|+...+.| +...+..+-..|... ++.
T Consensus 236 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~ 312 (490)
T 2xm6_A 236 TQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNR 312 (490)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCH
Confidence 56666666666666665433333334445555 677777777777766653 455566666666665 677
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHH
Q 043311 139 KEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVR----AQKVD 214 (257)
Q Consensus 139 ~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~ 214 (257)
++|..+|++..+.| +...+..+-..|...|. ....++|.++|+...+.| +...+..|-..|.. .++++
T Consensus 313 ~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~--~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~ 384 (490)
T 2xm6_A 313 EQAISWYTKSAEQG---DATAQANLGAIYFRLGS--EEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQ 384 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCC--HHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCC--cccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 78887777777654 44555555555555332 335788888888877653 56677777777777 78889
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhc----CCchhhHHhhhcC
Q 043311 215 EARGLLQQMKAKGFVPDEKAVKEALIDKRG----QGFRGVINILFGK 257 (257)
Q Consensus 215 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~~~~l~~k 257 (257)
+|...|++..+.| +...+..+-..+.. .++.+.|...|+|
T Consensus 385 ~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 428 (490)
T 2xm6_A 385 QAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDT 428 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 9999999888876 45666666666666 7888888887753
No 67
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.53 E-value=1.8e-05 Score=60.53 Aligned_cols=147 Identities=13% Similarity=-0.017 Sum_probs=101.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~ 172 (257)
.-..+.+.|++++|.+.|+...+....++...+..+-.++...|++++|...|++..+.+ +-+...|..+-..+...|+
T Consensus 13 ~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~ 91 (228)
T 4i17_A 13 EGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAAYRDMKN 91 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHccc
Confidence 455667788888888888877765433566666667777788888888888888877653 2255677777777777444
Q ss_pred CcchhHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHh
Q 043311 173 GNAKILGDAQKYLMEMVGKGMRPNA-------GTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD---EKAVKEALIDK 242 (257)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~t~~~ll~~~ 242 (257)
+++|.+.|+...+.. +-+. ..|..+-..+...|++++|.+.|++..+. .|+ ...+..+-..+
T Consensus 92 -----~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 92 -----NQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVLF 163 (228)
T ss_dssp -----HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHH
Confidence 888888888776532 2233 66777777777888888888888887654 454 45555666666
Q ss_pred hcCCch
Q 043311 243 RGQGFR 248 (257)
Q Consensus 243 ~~~g~~ 248 (257)
...|..
T Consensus 164 ~~~~~~ 169 (228)
T 4i17_A 164 YNNGAD 169 (228)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666665
No 68
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.52 E-value=5.6e-06 Score=74.64 Aligned_cols=151 Identities=11% Similarity=0.087 Sum_probs=127.2
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcH----HHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNA----VKMFDALSKDGLTHEALQLFAQIKDKGHMP-DVVAHTAVIEAYASAGQ 137 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~ 137 (257)
..+.+.|++++|.+.|++..+. .|+. ..+-.+|.+.|++++|.+.|++..+. .| +...|+.+=.+|.+.|+
T Consensus 17 ~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~~l~~~g~ 92 (723)
T 4gyw_A 17 NIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD 92 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 6778899999999999999884 3332 24778899999999999999998874 35 46789999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHH
Q 043311 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQKVDEA 216 (257)
Q Consensus 138 ~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a 216 (257)
+++|.+.|++..+.+ +-+...|+.+-..+... |++++|.+.|++..+. .| +...|..+...+...|++++|
T Consensus 93 ~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~-----g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 93 VQGALQCYTRAIQIN-PAFADAHSNLASIHKDS-----GNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHHHH
Confidence 999999999988753 33678999999999994 4599999999998763 45 457899999999999999999
Q ss_pred HHHHHHHHH
Q 043311 217 RGLLQQMKA 225 (257)
Q Consensus 217 ~~~~~~m~~ 225 (257)
.+.+++..+
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998888764
No 69
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.52 E-value=3.5e-06 Score=67.44 Aligned_cols=171 Identities=9% Similarity=-0.058 Sum_probs=112.9
Q ss_pred CHHHHHHHHHHHHhCCCCCcHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChHHHHHH
Q 043311 70 DPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDK----GHMPD-VVAHTAVIEAYASAGQGKEALRV 144 (257)
Q Consensus 70 ~~~~a~~~~~~m~~~~~~p~~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~~~~~~a~~~ 144 (257)
++++|...|... ...|...|++++|.+.|....+. |-.++ ..+|+.+-.+|.+.|++++|...
T Consensus 32 ~~~~A~~~~~~a------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~ 99 (292)
T 1qqe_A 32 KFEEAADLCVQA------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDS 99 (292)
T ss_dssp HHHHHHHHHHHH------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 377777777665 34567788888888888766442 22222 45788888888888888888888
Q ss_pred HHHHHHC----CCCC-CHHHHHHHHHHHHhc-cCCcchhHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCCH
Q 043311 145 FMRMLAS----GVAP-NAYTYAVLIKGLAAA-ADGNAKILGDAQKYLMEMVGK----GMRPN-AGTYTAVFEAFVRAQKV 213 (257)
Q Consensus 145 ~~~m~~~----g~~~-~~~t~~~ll~~~~~~-~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~~~~ 213 (257)
|++-.+. |-.. -..+|+.+-..|... |+ +++|...|++..+. +-.+. ..+|+.+-..+.+.|++
T Consensus 100 ~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~-----~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 174 (292)
T 1qqe_A 100 LENAIQIFTHRGQFRRGANFKFELGEILENDLHD-----YAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQY 174 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcC-----HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCH
Confidence 8776542 1100 135677777777773 44 88888888776531 11101 24577777888888888
Q ss_pred HHHHHHHHHHHHCCCCCCH------HHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 214 DEARGLLQQMKAKGFVPDE------KAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 214 ~~a~~~~~~m~~~g~~p~~------~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
++|...|++..+....... ..+..+...+...|+.+.|...|++
T Consensus 175 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 224 (292)
T 1qqe_A 175 IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQE 224 (292)
T ss_dssp HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888888875432221 1456666677788888888877753
No 70
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.48 E-value=9.6e-07 Score=73.70 Aligned_cols=189 Identities=14% Similarity=-0.028 Sum_probs=123.1
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCc------HHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNN------AVKMFDALSKDGLTHEALQLFAQIKDK----GHMP-DVVAHTAVIEA 131 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~------~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~ 131 (257)
..+...|++++|...|+...+.+.... ...+-..|...|++++|...|++..+. +-.| ...+|..+-..
T Consensus 56 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 135 (411)
T 4a1s_A 56 ERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNT 135 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHH
Confidence 556778888888888888887533211 113566777888888888888776542 1112 34567777788
Q ss_pred HHhcCChHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHhccCCcchh-----------------HHHHHHHHHHHH
Q 043311 132 YASAGQGKEALRVFMRMLAS----G-VAPNAYTYAVLIKGLAAAADGNAKI-----------------LGDAQKYLMEMV 189 (257)
Q Consensus 132 ~~~~~~~~~a~~~~~~m~~~----g-~~~~~~t~~~ll~~~~~~~~~~~~~-----------------~~~a~~~~~~m~ 189 (257)
|...|++++|...|++..+. + ......+|..+-..+.. .|. ++.|.+.+++..
T Consensus 136 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 210 (411)
T 4a1s_A 136 LKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHA-----KGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-----HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH-----cCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 88888888888888876643 1 11233466666666666 566 777777776654
Q ss_pred h----CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 190 G----KGMRP-NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF-VPD----EKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 190 ~----~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
+ .+-.+ ....+..+-..|...|++++|...+++..+..- .++ ...+..+-..+...|+.+.|..+|+
T Consensus 211 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 211 KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 2 11111 223667777778888888888888887765310 112 2366667777888888888877765
No 71
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.47 E-value=9.9e-06 Score=67.59 Aligned_cols=182 Identities=9% Similarity=-0.039 Sum_probs=140.8
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHH----HHHHHHHhcCC-hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAV----KMFDALSKDGL-THEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ 137 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~ll~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 137 (257)
..+...|++++|...++...+.. |+.. .+-.++.+.|+ +++|+..|+...+.. .-+...|+.+-.++...|+
T Consensus 105 ~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~~~g~ 181 (382)
T 2h6f_A 105 AVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRD 181 (382)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHccC
Confidence 45567899999999999998843 3322 36667788996 999999999998852 2257789999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCCHHHH
Q 043311 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVR-AQKVDEA 216 (257)
Q Consensus 138 ~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-~~~~~~a 216 (257)
+++|...|++..+.. +-+...|..+-..+...|+ +++|...|+.+.+.. +-+...|+.+-..+.+ .|..++|
T Consensus 182 ~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~-----~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 182 PSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKL-----WDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp CTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC-----CTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCC-----hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHH
Confidence 999999999999864 4478899999999998444 899999999988742 2256789989889998 6665777
Q ss_pred -----HHHHHHHHHCCCCCCHHHHHHHHHHhhcCC--chhhHHhhh
Q 043311 217 -----RGLLQQMKAKGFVPDEKAVKEALIDKRGQG--FRGVINILF 255 (257)
Q Consensus 217 -----~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g--~~~~~~~l~ 255 (257)
...|++..... .-+...|..+-..+...| +.+.+...+
T Consensus 255 ~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~ 299 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQL 299 (382)
T ss_dssp HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHH
Confidence 58888887743 225667777777788777 456665544
No 72
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.46 E-value=7.2e-06 Score=65.63 Aligned_cols=188 Identities=10% Similarity=0.014 Sum_probs=131.2
Q ss_pred ccccCCCCHHHHHHHHHHHHhC----CCCCcHH----HHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTE----GLTNNAV----KMFDALSKDGLTHEALQLFAQIKDK----GHMP-DVVAHTAVI 129 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~----~ll~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li 129 (257)
..+...|++++|...|....+. |-.+... .+-.+|.+.|++++|...|+...+. |-.. -..+|+.+-
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 124 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4567789999999999887763 3222211 3777888999999999999877643 2111 135788888
Q ss_pred HHHHhc-CChHHHHHHHHHHHHCC----CCCC-HHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCH------
Q 043311 130 EAYASA-GQGKEALRVFMRMLASG----VAPN-AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA------ 197 (257)
Q Consensus 130 ~~~~~~-~~~~~a~~~~~~m~~~g----~~~~-~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~------ 197 (257)
..|... |++++|...|++..+.. -... ..+|..+-..+...|+ +++|...|+...+.......
T Consensus 125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~-----~~~A~~~~~~al~~~~~~~~~~~~~~ 199 (292)
T 1qqe_A 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQ-----YIEASDIYSKLIKSSMGNRLSQWSLK 199 (292)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCC-----HHHHHHHHHHHHHHHhcCCcccHHHH
Confidence 899996 99999999999877531 1111 3578888888999444 99999999998864322221
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHhh--cCCchhhHHhhhcC
Q 043311 198 GTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD------EKAVKEALIDKR--GQGFRGVINILFGK 257 (257)
Q Consensus 198 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~------~~t~~~ll~~~~--~~g~~~~~~~l~~k 257 (257)
..|..+..++...|++++|...|++..+. .|+ ...+..+..++. ..+.++.+...|++
T Consensus 200 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~ 265 (292)
T 1qqe_A 200 DYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDN 265 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Confidence 15677778899999999999999998652 332 123445556664 45667777776653
No 73
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.40 E-value=4.2e-05 Score=57.57 Aligned_cols=125 Identities=14% Similarity=0.005 Sum_probs=99.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~ 172 (257)
+-..+...|++++|.+.|+.. +.|+...|..+-..|...|++++|...|++..+.. +.+...|..+-..+...|+
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 455677889999999998876 35688899999999999999999999999888763 4467888888888888444
Q ss_pred CcchhHHHHHHHHHHHHhCC--------------CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 043311 173 GNAKILGDAQKYLMEMVGKG--------------MRP-NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227 (257)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~~g--------------~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 227 (257)
+++|.+.|+...+.. ..| ....+..+-..|.+.|++++|...|++..+..
T Consensus 87 -----~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 87 -----YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp -----HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred -----HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999999887632 111 12567788888999999999999999988754
No 74
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.39 E-value=1.8e-05 Score=61.98 Aligned_cols=160 Identities=11% Similarity=-0.026 Sum_probs=104.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-C-CCHHHHHHHHHH
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPD----VVAHTAVIEAYASAGQGKEALRVFMRMLASGV-A-PNAYTYAVLIKG 166 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~-~~~~t~~~ll~~ 166 (257)
.-..+.+.|++++|...|+...+.. |+ ...+..+-.+|.+.|++++|...|++..+..- . .....+..+-..
T Consensus 21 ~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~ 98 (261)
T 3qky_A 21 RAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMC 98 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHH
Confidence 5566777888888888888887652 32 45677777778888888888888888876421 1 123444444455
Q ss_pred HHhccC---CcchhHHHHHHHHHHHHhCCCCCCH-HHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHH
Q 043311 167 LAAAAD---GNAKILGDAQKYLMEMVGKGMRPNA-GTY-----------------TAVFEAFVRAQKVDEARGLLQQMKA 225 (257)
Q Consensus 167 ~~~~~~---~~~~~~~~a~~~~~~m~~~g~~p~~-~~~-----------------~~li~~~~~~~~~~~a~~~~~~m~~ 225 (257)
+...+. .+.|.+++|...|+...+. .|+. ... ..+-..|.+.|++++|...|++..+
T Consensus 99 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 176 (261)
T 3qky_A 99 YYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFD 176 (261)
T ss_dssp HHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 544100 0134488888888887753 2332 223 3456778899999999999999987
Q ss_pred CCCC-C-CHHHHHHHHHHhhcC----------CchhhHHhhhc
Q 043311 226 KGFV-P-DEKAVKEALIDKRGQ----------GFRGVINILFG 256 (257)
Q Consensus 226 ~g~~-p-~~~t~~~ll~~~~~~----------g~~~~~~~l~~ 256 (257)
..-. + ....+..+-.++... |+.+.|...|+
T Consensus 177 ~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~ 219 (261)
T 3qky_A 177 AYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYE 219 (261)
T ss_dssp HCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHH
T ss_pred HCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHH
Confidence 5211 1 245666666677765 77788887765
No 75
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.39 E-value=1.2e-05 Score=70.45 Aligned_cols=152 Identities=11% Similarity=-0.080 Sum_probs=107.9
Q ss_pred CCCHHHHHHHHHHHHhCCCC-CcH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 043311 68 PTDPRNLQEIFHKMRTEGLT-NNA-VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVF 145 (257)
Q Consensus 68 ~~~~~~a~~~~~~m~~~~~~-p~~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 145 (257)
.|++++|.+.|++..+..-. +.. ..+-..|.+.|++++|.+.|++..+.. +-+...|..+-.+|...|++++|...|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 47889999999988764322 111 246778889999999999999988752 235778999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHH
Q 043311 146 MRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA---QKVDEARGLLQQ 222 (257)
Q Consensus 146 ~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~---~~~~~a~~~~~~ 222 (257)
++..+.. +-+...|..+-..+...|+ +++|.+.|++..+.. +-+...+..+...+... |+.++|.+.+++
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~-----~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~ 153 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQ-----AEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRA 153 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 9988763 3467889999999999554 999999999987642 23567888899999999 999999999999
Q ss_pred HHHCC
Q 043311 223 MKAKG 227 (257)
Q Consensus 223 m~~~g 227 (257)
..+.+
T Consensus 154 al~~~ 158 (568)
T 2vsy_A 154 AVAQG 158 (568)
T ss_dssp HHHHT
T ss_pred HHhcC
Confidence 98764
No 76
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.37 E-value=2.3e-05 Score=68.71 Aligned_cols=147 Identities=14% Similarity=-0.020 Sum_probs=93.6
Q ss_pred CccchhhcccCCCCCCcccccc---ccccCCCCHHHHHHHHHHHHhCCCC-CcH-HHHHHHHHhcCChHHHHHHHHHHHh
Q 043311 41 QPTKKYVNTKSKLPPPYDPFKK---VVDEEPTDPRNLQEIFHKMRTEGLT-NNA-VKMFDALSKDGLTHEALQLFAQIKD 115 (257)
Q Consensus 41 ~~~~~~~~~~~~~~p~~~~~~~---~~~~~~~~~~~a~~~~~~m~~~~~~-p~~-~~ll~~~~~~~~~~~a~~~~~~m~~ 115 (257)
+.+...+.+.....|+...... ..+...|++++|.+.|++..+..-. +.. ..+-.+|.+.|++++|.+.|++..+
T Consensus 6 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 85 (568)
T 2vsy_A 6 PRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASD 85 (568)
T ss_dssp ---------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3334444444444444222211 6667788899999998888875322 111 1366777888999999988888876
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhC
Q 043311 116 KGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191 (257)
Q Consensus 116 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~ 191 (257)
.. +-+...|..+-.+|.+.|++++|.+.|++..+.. +-+...+..+...+...++ -|+.++|.+.+++..+.
T Consensus 86 ~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~--~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 86 AA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCD--WRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC--CTTHHHHHHHHHHHHHH
T ss_pred cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhc--cccHHHHHHHHHHHHhc
Confidence 42 2346788888888888899999999988887653 3356778888888888522 14588888888887764
No 77
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.37 E-value=6e-05 Score=57.26 Aligned_cols=174 Identities=10% Similarity=-0.001 Sum_probs=113.5
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----ChHHHHHHHHHH
Q 043311 73 NLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG----QGKEALRVFMRM 148 (257)
Q Consensus 73 ~a~~~~~~m~~~~~~p~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~----~~~~a~~~~~~m 148 (257)
+|.+.|....+.|.......+-..|...+++++|.+.|+...+.| +...+..|=..|.. + +.++|..+|++-
T Consensus 4 eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 4 EPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 456677777776644444456667777888888888888887765 55666666666666 5 788888888888
Q ss_pred HHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHH----cCCHHHHHHHHHHH
Q 043311 149 LASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR-PNAGTYTAVFEAFVR----AQKVDEARGLLQQM 223 (257)
Q Consensus 149 ~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~----~~~~~~a~~~~~~m 223 (257)
.+.| +...+..+-..|.. |.+..+.+++|.++|+...+.|.. -+...+..|-..|.. .+++++|...|++.
T Consensus 80 ~~~g---~~~a~~~Lg~~y~~-g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 80 VEAG---SKSGEIVLARVLVN-RQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHTT---CHHHHHHHHHHHTC-GGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHc-CCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 7765 55566666555543 111133488888888887765421 015666667777777 67888888888888
Q ss_pred HHCCCCCCHHHHHHHHHHhhcC-C-----chhhHHhhhc
Q 043311 224 KAKGFVPDEKAVKEALIDKRGQ-G-----FRGVINILFG 256 (257)
Q Consensus 224 ~~~g~~p~~~t~~~ll~~~~~~-g-----~~~~~~~l~~ 256 (257)
.+.+ .+...+..|-..|... | +.++|...|+
T Consensus 156 ~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~ 192 (212)
T 3rjv_A 156 SSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLN 192 (212)
T ss_dssp HHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHH
T ss_pred HHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHH
Confidence 7762 2333444444444332 2 6777777765
No 78
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.34 E-value=6.2e-06 Score=66.11 Aligned_cols=189 Identities=14% Similarity=-0.037 Sum_probs=116.5
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcH------HHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNA------VKMFDALSKDGLTHEALQLFAQIKDK----GHMP-DVVAHTAVIEA 131 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~------~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~ 131 (257)
..+...|+++.|...|+...+....... ..+-..+...|++++|.+.|+...+. +..| ...++..+-..
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 92 (338)
T 3ro2_A 13 ERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNT 92 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 3455678888888888887775322111 13566777788888888887765432 2122 24567777777
Q ss_pred HHhcCChHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHHhccCCcchh--------------------HHHHHHHHH
Q 043311 132 YASAGQGKEALRVFMRMLASG-VAPN----AYTYAVLIKGLAAAADGNAKI--------------------LGDAQKYLM 186 (257)
Q Consensus 132 ~~~~~~~~~a~~~~~~m~~~g-~~~~----~~t~~~ll~~~~~~~~~~~~~--------------------~~~a~~~~~ 186 (257)
|...|++++|...|++..+.. -.++ ..++..+-..+.. .|. ++.|.+.++
T Consensus 93 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 93 LKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA-----KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----HHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-----cCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 888888888888887765421 0112 3366666666666 555 677777766
Q ss_pred HHHh----CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 187 EMVG----KGMRP-NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG-FVPD----EKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 187 ~m~~----~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~----~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
+... .+-.+ ....+..+-..+...|++++|...+++..+.. -.++ ..++..+...+...|+.+.|..+|+
T Consensus 168 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 247 (338)
T 3ro2_A 168 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 247 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5432 11111 12356667777777888888888887776431 0111 2356666667777788777777664
No 79
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.34 E-value=4.1e-05 Score=51.83 Aligned_cols=98 Identities=19% Similarity=0.173 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHH
Q 043311 122 VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYT 201 (257)
Q Consensus 122 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 201 (257)
...|..+...+...|++++|..+|+++.+.. +.+..++..+...+...| ++++|..+|+.+.+.. +.+..++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~-----~~~~A~~~~~~~~~~~-~~~~~~~~ 81 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQG-----DYDEAIEYYQKALELD-PNNAEAWY 81 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHhC-CccHHHHH
Confidence 4566667777777777777777777776542 335666777777777733 3777777777766532 23556677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC
Q 043311 202 AVFEAFVRAQKVDEARGLLQQMKAK 226 (257)
Q Consensus 202 ~li~~~~~~~~~~~a~~~~~~m~~~ 226 (257)
.+...+...|++++|...++++.+.
T Consensus 82 ~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 82 NLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 7777777777777777777777654
No 80
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.34 E-value=6.4e-06 Score=60.62 Aligned_cols=155 Identities=14% Similarity=0.079 Sum_probs=93.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGHMP-DVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAA 170 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~ 170 (257)
..-..+.+.|++++|...|+...+. .| +...|..+-..+...|++++|...|+...+. .|+...+.........
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~- 85 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELH- 85 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHH-
Confidence 3455667777888888777765542 23 4566777777777788888888777776543 2244333222111110
Q ss_pred cCCcchhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCch
Q 043311 171 ADGNAKILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP-DEKAVKEALIDKRGQGFR 248 (257)
Q Consensus 171 ~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~ 248 (257)
+ .+....+...|+...+. .| +...+..+-..+...|++++|...|+++.+..-.+ +...+..+...+...|+.
T Consensus 86 ~---~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 160 (176)
T 2r5s_A 86 Q---QAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQG 160 (176)
T ss_dssp H---HHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSS
T ss_pred h---hcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCC
Confidence 0 00112345556655542 34 45667777777778888888888888777653222 345677777777777777
Q ss_pred hhHHhhhc
Q 043311 249 GVINILFG 256 (257)
Q Consensus 249 ~~~~~l~~ 256 (257)
+.+...|+
T Consensus 161 ~~A~~~y~ 168 (176)
T 2r5s_A 161 NAIASKYR 168 (176)
T ss_dssp CHHHHHHH
T ss_pred CcHHHHHH
Confidence 77766654
No 81
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.33 E-value=2.3e-05 Score=63.08 Aligned_cols=141 Identities=8% Similarity=-0.005 Sum_probs=109.3
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhccCCcchhHHHHHHH
Q 043311 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGV-APNAYTYAVLIKGLAAAADGNAKILGDAQKY 184 (257)
Q Consensus 106 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~ 184 (257)
+...|++..+.+ .++..++..+-.++...|++++|++++.+-...|- .-+...+..+++.+.+ .|+.+.|.+.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~-----~~r~d~A~k~ 158 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALL-----NNNVSTASTI 158 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHH-----TTCHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHH-----CCCHHHHHHH
Confidence 677777777655 45666667888889999999999999999876553 2477889999999999 5559999999
Q ss_pred HHHHHhCCCCC-----CHHHHHHHHHHHH--HcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhh
Q 043311 185 LMEMVGKGMRP-----NAGTYTAVFEAFV--RAQ--KVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILF 255 (257)
Q Consensus 185 ~~~m~~~g~~p-----~~~~~~~li~~~~--~~~--~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~ 255 (257)
++.|.+. .| +..+...|..+++ ..| +..+|..+|+++.+. .|+..+...++.++...|+++.|++++
T Consensus 159 l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L 234 (310)
T 3mv2_B 159 FDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIV 234 (310)
T ss_dssp HHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHH
Confidence 9999874 56 3566666666633 334 899999999998765 466455556666899999999999987
Q ss_pred c
Q 043311 256 G 256 (257)
Q Consensus 256 ~ 256 (257)
+
T Consensus 235 ~ 235 (310)
T 3mv2_B 235 E 235 (310)
T ss_dssp H
T ss_pred H
Confidence 4
No 82
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.32 E-value=4.7e-05 Score=58.26 Aligned_cols=159 Identities=16% Similarity=0.092 Sum_probs=82.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCH-HHHHHHHHHHHh
Q 043311 94 FDALSKDGLTHEALQLFAQIKDKGH-MPD-VVAHTAVIEAYASAGQGKEALRVFMRMLASGVA-PNA-YTYAVLIKGLAA 169 (257)
Q Consensus 94 l~~~~~~~~~~~a~~~~~~m~~~g~-~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-~~~-~t~~~ll~~~~~ 169 (257)
-..+.+.|++++|...|+.+.+... .|. ...+..+-.+|.+.|++++|...|++..+..-. +.. ..+-.+-..+..
T Consensus 11 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~ 90 (225)
T 2yhc_A 11 AQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMA 90 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHh
Confidence 3445556666666666666654321 111 234555556666666666666666666543211 110 122222222221
Q ss_pred cc-------------CCcchhHHHHHHHHHHHHhCCCCCCHH-HH-----------------HHHHHHHHHcCCHHHHHH
Q 043311 170 AA-------------DGNAKILGDAQKYLMEMVGKGMRPNAG-TY-----------------TAVFEAFVRAQKVDEARG 218 (257)
Q Consensus 170 ~~-------------~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~-----------------~~li~~~~~~~~~~~a~~ 218 (257)
.+ ..+.|.+++|...|+.+.+. .|+.. .+ -.+-..|.+.|++++|..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~ 168 (225)
T 2yhc_A 91 LDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVN 168 (225)
T ss_dssp HHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 10 01134567777777766643 23321 11 123345667777777777
Q ss_pred HHHHHHHCCCCCC----HHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 219 LLQQMKAKGFVPD----EKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 219 ~~~~m~~~g~~p~----~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
.|+++.+. .|+ ...+..+..++.+.|+.+.|...++
T Consensus 169 ~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~ 208 (225)
T 2yhc_A 169 RVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAK 208 (225)
T ss_dssp HHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 77777664 233 2456666677777777777776654
No 83
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.32 E-value=2.7e-06 Score=70.63 Aligned_cols=187 Identities=9% Similarity=-0.020 Sum_probs=134.2
Q ss_pred ccccCCCCHHHHHHHHHHHHhC--CCC---CcHH----HHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTE--GLT---NNAV----KMFDALSKDGLTHEALQLFAQIKDK----GHMP-DVVAHTAV 128 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~--~~~---p~~~----~ll~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~l 128 (257)
..+...|+++.|...+....+. ... +... .+-.+|...|++++|.+.|....+. +-.+ ...+|..+
T Consensus 151 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 230 (383)
T 3ulq_A 151 ESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNI 230 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 7778899999999999988762 111 1111 3667888999999999999887643 2111 12478888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhC----CCCCCHHH
Q 043311 129 IEAYASAGQGKEALRVFMRMLAS----GV-APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK----GMRPNAGT 199 (257)
Q Consensus 129 i~~~~~~~~~~~a~~~~~~m~~~----g~-~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~----g~~p~~~~ 199 (257)
=.+|...|++++|...|++..+. +. +....++..+-..+.+.|+ +++|...+++..+. +-+.....
T Consensus 231 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~al~~~~~~~~~~~~~~ 305 (383)
T 3ulq_A 231 GLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGK-----IDKAHEYHSKGMAYSQKAGDVIYLSE 305 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 89999999999999999988762 23 4456788889999999555 99999998876531 11112234
Q ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 200 YTAVFEAFVRAQK---VDEARGLLQQMKAKGFVPD-EKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 200 ~~~li~~~~~~~~---~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
++.+-..|...|+ +++|..++++. +..|+ ...+..+-..+...|+.+.|..+|+|
T Consensus 306 ~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 364 (383)
T 3ulq_A 306 FEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLK 364 (383)
T ss_dssp HHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 5667777888888 66666666654 33333 34566677789999999999988864
No 84
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.32 E-value=5.5e-06 Score=68.57 Aligned_cols=87 Identities=16% Similarity=-0.002 Sum_probs=42.4
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcH------HHHHHHHHhcCChHHHHHHHHHHHhC----CCCCC-HHHHHHHHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNA------VKMFDALSKDGLTHEALQLFAQIKDK----GHMPD-VVAHTAVIEA 131 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~------~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~ 131 (257)
..+...|++++|...|+...+.+..... ..+-..|...|++++|...|+...+. +-.|. ..+|..+-..
T Consensus 17 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 96 (406)
T 3sf4_A 17 ERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNT 96 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 3444556666666666655554221110 02444555566666666655544321 11111 3345555555
Q ss_pred HHhcCChHHHHHHHHHHH
Q 043311 132 YASAGQGKEALRVFMRML 149 (257)
Q Consensus 132 ~~~~~~~~~a~~~~~~m~ 149 (257)
|...|++++|...|++..
T Consensus 97 ~~~~g~~~~A~~~~~~al 114 (406)
T 3sf4_A 97 LKVLGNFDEAIVCCQRHL 114 (406)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 556666666666655544
No 85
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.30 E-value=1.5e-05 Score=64.25 Aligned_cols=156 Identities=11% Similarity=-0.021 Sum_probs=84.8
Q ss_pred ccccCCCCHHHHHHHHHHHHhC----CCCCcH----HHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTE----GLTNNA----VKMFDALSKDGLTHEALQLFAQIKDK----GHMP-DVVAHTAVI 129 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~----~~~p~~----~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li 129 (257)
..+...|++++|...|.+..+. +-.+.. ..+-.+|.+.|++++|...|+...+. |-.. -..+|+.+-
T Consensus 44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 123 (307)
T 2ifu_A 44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455566667666666655542 111111 12455566667777777777655432 1111 124555666
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHh----CCCCCCH-HH
Q 043311 130 EAYASAGQGKEALRVFMRMLASGVAPN-----AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG----KGMRPNA-GT 199 (257)
Q Consensus 130 ~~~~~~~~~~~a~~~~~~m~~~g~~~~-----~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~----~g~~p~~-~~ 199 (257)
..|.. |++++|...|++..+.....+ ..+|..+-..+...| ++++|...|++... .+..+.. ..
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~ 197 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQ-----KFDEAAASLQKEKSMYKEMENYPTCYKK 197 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHcCChhHHHHH
Confidence 66666 777777777776665321111 345556666666633 37777777766553 1111111 24
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 043311 200 YTAVFEAFVRAQKVDEARGLLQQMK 224 (257)
Q Consensus 200 ~~~li~~~~~~~~~~~a~~~~~~m~ 224 (257)
+..+...+...|++++|...|++..
T Consensus 198 ~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 198 CIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 5555555666677777777777766
No 86
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.27 E-value=1.4e-05 Score=66.16 Aligned_cols=189 Identities=11% Similarity=0.021 Sum_probs=134.2
Q ss_pred ccccCCCCHHHHHHHHHHHHhCC-CCCcHH-------HHHHHHHhcCChHHHHHHHHHHHhC----CC-CC-CHHHHHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEG-LTNNAV-------KMFDALSKDGLTHEALQLFAQIKDK----GH-MP-DVVAHTAV 128 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~-------~ll~~~~~~~~~~~a~~~~~~m~~~----g~-~p-~~~~~~~l 128 (257)
..+...|+++.|.+.|+...+.- -.++.. .+-..|...|+++.|...|.+..+. +- .+ ...+++.+
T Consensus 111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 56678999999999999998741 122221 3677888999999999999887643 11 11 24578888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHh----CCC-CCCHH
Q 043311 129 IEAYASAGQGKEALRVFMRMLASGV-APN----AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG----KGM-RPNAG 198 (257)
Q Consensus 129 i~~~~~~~~~~~a~~~~~~m~~~g~-~~~----~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~----~g~-~p~~~ 198 (257)
=..|...|++++|...|++..+..- ..+ ..+|..+-..|...|+ +++|.+.|++..+ .+. +-...
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~-----~~~A~~~~~~al~~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQ-----YEDAIPYFKRAIAVFEESNILPSLPQ 265 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHhhccchhHHH
Confidence 8899999999999999988764310 112 2477788888888554 9999999988765 133 22356
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHhhcCCc---hhhHHhhhc
Q 043311 199 TYTAVFEAFVRAQKVDEARGLLQQMKAK----GFVPDEKAVKEALIDKRGQGF---RGVINILFG 256 (257)
Q Consensus 199 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~~~t~~~ll~~~~~~g~---~~~~~~l~~ 256 (257)
++..+-..|.+.|++++|...+++..+. +-......+..+-..+...|+ .+.+..+++
T Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~ 330 (383)
T 3ulq_A 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLE 330 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 7888899999999999999999998753 111122334556667777887 566655543
No 87
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.27 E-value=3.7e-05 Score=60.13 Aligned_cols=156 Identities=11% Similarity=0.051 Sum_probs=115.8
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCC-CCc---H-HHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC-HHHHHHHHHHHHh-
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGL-TNN---A-VKMFDALSKDGLTHEALQLFAQIKDKGH-MPD-VVAHTAVIEAYAS- 134 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~-~p~---~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~-~~~~~~li~~~~~- 134 (257)
..+.+.|++++|...|+.+.+..- .|. . ..+-.+|.+.|++++|...|+...+... .|. ...+..+-.++..
T Consensus 23 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~ 102 (261)
T 3qky_A 23 MEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKL 102 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHh
Confidence 667789999999999999998532 211 1 1367788999999999999999987522 222 4567777777888
Q ss_pred -------cCChHHHHHHHHHHHHCCCCCCHHHH-----------------HHHHHHHHhccCCcchhHHHHHHHHHHHHh
Q 043311 135 -------AGQGKEALRVFMRMLASGVAPNAYTY-----------------AVLIKGLAAAADGNAKILGDAQKYLMEMVG 190 (257)
Q Consensus 135 -------~~~~~~a~~~~~~m~~~g~~~~~~t~-----------------~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~ 190 (257)
.|++++|...|++..+.. +-+...+ ..+-..+... |+++.|...|+...+
T Consensus 103 ~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~l~ 176 (261)
T 3qky_A 103 SPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKLARKQYEAARLYERR-----ELYEAAAVTYEAVFD 176 (261)
T ss_dssp CCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHH
T ss_pred cccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHH
Confidence 999999999999998752 1122233 3445566774 449999999999876
Q ss_pred CCCCCC----HHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHC
Q 043311 191 KGMRPN----AGTYTAVFEAFVRA----------QKVDEARGLLQQMKAK 226 (257)
Q Consensus 191 ~g~~p~----~~~~~~li~~~~~~----------~~~~~a~~~~~~m~~~ 226 (257)
. .|+ ...+..+..+|... |++++|...|++..+.
T Consensus 177 ~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 177 A--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp H--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred H--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 4 243 34566777778766 8999999999999875
No 88
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.26 E-value=2.2e-05 Score=62.74 Aligned_cols=160 Identities=9% Similarity=-0.037 Sum_probs=114.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCC-CCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKG-HMPDV----VAHTAVIEAYASAGQGKEALRVFMRMLASGVA-PN----AYTYAV 162 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g-~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-~~----~~t~~~ 162 (257)
.+..+...|++++|.++++...+.. ..|+. ..+..+...+...+++++|...|++..+.... .+ ..+|+.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3667788999999999999987742 22332 23344666666778999999999998874222 23 346888
Q ss_pred HHHHHHhccCCcchhHHHHHHHHHHHHh----C-CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCC-
Q 043311 163 LIKGLAAAADGNAKILGDAQKYLMEMVG----K-GMRPNA-GTYTAVFEAFVRAQKVDEARGLLQQMKA----KGFVPD- 231 (257)
Q Consensus 163 ll~~~~~~~~~~~~~~~~a~~~~~~m~~----~-g~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p~- 231 (257)
+-..|...|+ ++.|...|+...+ . +..+.. .+|..+-..|.+.|++++|...+++..+ .+..+.
T Consensus 161 lg~~y~~~g~-----~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~ 235 (293)
T 3u3w_A 161 IANIYAENGY-----LKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHTTC-----HHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTH
T ss_pred HHHHHHHcCC-----HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 8888888555 9999999988773 1 222222 3678888999999999999999988764 233333
Q ss_pred HHHHHHHHHHhhcCCc-hhhHHhhhcC
Q 043311 232 EKAVKEALIDKRGQGF-RGVINILFGK 257 (257)
Q Consensus 232 ~~t~~~ll~~~~~~g~-~~~~~~l~~k 257 (257)
...|..+-..+...|+ .+.|...|+|
T Consensus 236 ~~~~~~lg~~~~~~g~~~~~A~~~~~~ 262 (293)
T 3u3w_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 5677788888889994 5888877653
No 89
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.24 E-value=6.7e-05 Score=59.82 Aligned_cols=173 Identities=10% Similarity=0.042 Sum_probs=125.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCcHH----HHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHH
Q 043311 69 TDPRNLQEIFHKMRTEGLTNNAV----KMFDALSKDGLTHEALQLFAQIKDKGHMP-DVVAHTAVIEAYASAGQGKEALR 143 (257)
Q Consensus 69 ~~~~~a~~~~~~m~~~~~~p~~~----~ll~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~ 143 (257)
...+...+.+.... |+.. .+-..+.+.|++++|...|+...+. .| +...+..+-..+...|++++|..
T Consensus 100 ~~~~~l~~~l~~~l-----p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~ 172 (287)
T 3qou_A 100 QPEEAIRALLDXVL-----PREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEA 172 (287)
T ss_dssp CCHHHHHHHHHHHS-----CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHc-----CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHH
Confidence 34444555554443 4432 3666778999999999999998774 34 56789999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHH-HHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043311 144 VFMRMLASGVAPNAYTYAVLIK-GLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222 (257)
Q Consensus 144 ~~~~m~~~g~~~~~~t~~~ll~-~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 222 (257)
.|++.... .|+......... .+.. .+..+.+...|+...... +.+...+..+-..+...|++++|...|++
T Consensus 173 ~l~~~~~~--~p~~~~~~~~~~~~l~~-----~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~ 244 (287)
T 3qou_A 173 VLXTIPLQ--DQDTRYQGLVAQIELLX-----QAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFG 244 (287)
T ss_dssp HHTTSCGG--GCSHHHHHHHHHHHHHH-----HHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhCchh--hcchHHHHHHHHHHHHh-----hcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 99988764 455543333222 2344 333566777787776541 33667888899999999999999999999
Q ss_pred HHHCCCC-CCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 223 MKAKGFV-PDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 223 m~~~g~~-p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
+.+..-. .+...+..+...+...|..+.+...|+
T Consensus 245 ~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r 279 (287)
T 3qou_A 245 HLRXDLTAADGQTRXTFQEILAALGTGDALASXYR 279 (287)
T ss_dssp HHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHhcccccccchHHHHHHHHHHHcCCCCcHHHHHH
Confidence 9986321 236788999999999999888776654
No 90
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.24 E-value=8.1e-05 Score=56.26 Aligned_cols=164 Identities=17% Similarity=0.102 Sum_probs=116.1
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHH----H----------------HHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAV----K----------------MFDALSKDGLTHEALQLFAQIKDKGHMPDV 122 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~----------------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 122 (257)
..+.+.|+++.|...|+...+. .|+.. . +-.+|.+.|++++|...|+...+.. +-+.
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~ 88 (208)
T 3urz_A 12 SAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PNNV 88 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCH
Confidence 3456789999999999998874 33322 2 5677889999999999999988752 2367
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHH--H
Q 043311 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGT--Y 200 (257)
Q Consensus 123 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~ 200 (257)
..|..+-.+|...|++++|...|++..+.. +-+...|..+-..+...+. +..+.+...++... .|+... +
T Consensus 89 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~---~~~~~~~~~~~~~~----~~~~~~~a~ 160 (208)
T 3urz_A 89 DCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE---QEKKKLETDYKKLS----SPTKMQYAR 160 (208)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH---HHHHHHHHHHC-------CCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHh----CCCchhHHH
Confidence 889999999999999999999999998763 3367788887777755222 12344555555543 344433 2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043311 201 TAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEAL 239 (257)
Q Consensus 201 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll 239 (257)
...-.++...|++++|...|++..+ +.|+......+.
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~ 197 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence 2233445667899999999999876 568866554443
No 91
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.23 E-value=2.9e-06 Score=70.73 Aligned_cols=220 Identities=9% Similarity=-0.060 Sum_probs=148.2
Q ss_pred hhhcccCCCCccchhhcccCCCCCCcc-----cc-cc-ccccCCCCHHHHHHHHHHHHhC----CCCCcHH----HHHHH
Q 043311 32 QRSLSSSSDQPTKKYVNTKSKLPPPYD-----PF-KK-VVDEEPTDPRNLQEIFHKMRTE----GLTNNAV----KMFDA 96 (257)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~p~~~-----~~-~~-~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~----~ll~~ 96 (257)
......++...+...+.+.....|+.. .+ .+ ..+...|+++.|...+++..+. +..|... .+-..
T Consensus 56 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 135 (411)
T 4a1s_A 56 ERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNT 135 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHH
Confidence 344556666666666555444444422 11 12 6777899999999999887753 2222221 36778
Q ss_pred HHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCC-----------------hHHHHHHHHHHHHC---
Q 043311 97 LSKDGLTHEALQLFAQIKDK----GHMP-DVVAHTAVIEAYASAGQ-----------------GKEALRVFMRMLAS--- 151 (257)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~~~-----------------~~~a~~~~~~m~~~--- 151 (257)
|...|++++|...|++..+. +-.+ ...+|..+-..|...|+ +++|...|++..+.
T Consensus 136 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~ 215 (411)
T 4a1s_A 136 LKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRD 215 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999887643 1112 34578888888999999 99999988876542
Q ss_pred -CC-CCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043311 152 -GV-APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM-RPN----AGTYTAVFEAFVRAQKVDEARGLLQQMK 224 (257)
Q Consensus 152 -g~-~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~ 224 (257)
+- .....+|..+-..+...|+ +++|...+++..+..- .++ ...+..+...|...|++++|...+++..
T Consensus 216 ~~~~~~~~~~~~~la~~~~~~g~-----~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 216 LGDRGAQGRACGNLGNTYYLLGD-----FQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCC-----hHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 11 1123577777788888444 8899888887654200 012 2367788888899999999999998877
Q ss_pred HCC--CC---CCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 225 AKG--FV---PDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 225 ~~g--~~---p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
... .. ....++..+-..+...|+.+.|..+|+
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (411)
T 4a1s_A 291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHN 327 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 531 11 124567777778889999999888775
No 92
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.23 E-value=1.9e-06 Score=71.43 Aligned_cols=190 Identities=11% Similarity=-0.019 Sum_probs=136.3
Q ss_pred ccccCCCCHHHHHHHHHHHHhC----CCCCc----HHHHHHHHHhcCC--------------------hHHHHHHHHHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTE----GLTNN----AVKMFDALSKDGL--------------------THEALQLFAQIK 114 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~----~~~p~----~~~ll~~~~~~~~--------------------~~~a~~~~~~m~ 114 (257)
..+...|+++.|...+....+. +-.+. ...+-..|...|+ +++|.+.|....
T Consensus 95 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 174 (406)
T 3sf4_A 95 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENL 174 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 6778899999999999887752 11111 1136677788888 899998887764
Q ss_pred hC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHHhccCCcchhHHHHHHH
Q 043311 115 DK----GHMP-DVVAHTAVIEAYASAGQGKEALRVFMRMLASG-VAPN----AYTYAVLIKGLAAAADGNAKILGDAQKY 184 (257)
Q Consensus 115 ~~----g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~~~----~~t~~~ll~~~~~~~~~~~~~~~~a~~~ 184 (257)
+. +..| ...+|..+-..|...|++++|...|++..+.. -.++ ..+|..+-..+...|+ +++|...
T Consensus 175 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-----~~~A~~~ 249 (406)
T 3sf4_A 175 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE-----FETASEY 249 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----HHHHHHH
T ss_pred HHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC-----hHHHHHH
Confidence 32 2222 23578888889999999999999998876431 1122 3477888888888554 9999999
Q ss_pred HHHHHh----CCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHhhcCCchhhHHhh
Q 043311 185 LMEMVG----KGMRPN-AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGF-VPD----EKAVKEALIDKRGQGFRGVINIL 254 (257)
Q Consensus 185 ~~~m~~----~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~~~~~~~l 254 (257)
+++... .+..+. ..++..+-..|...|++++|...+++.....- ..+ ..++..+-..+...|+.+.|..+
T Consensus 250 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 329 (406)
T 3sf4_A 250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHF 329 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 988653 221111 45788888999999999999999999875311 122 55777778889999999999988
Q ss_pred hcC
Q 043311 255 FGK 257 (257)
Q Consensus 255 ~~k 257 (257)
|++
T Consensus 330 ~~~ 332 (406)
T 3sf4_A 330 AEK 332 (406)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
No 93
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.22 E-value=0.00019 Score=57.16 Aligned_cols=158 Identities=9% Similarity=0.022 Sum_probs=116.9
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCC-CCcHH-------HHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHHHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGL-TNNAV-------KMFDALSKDGLTHEALQLFAQIKDKGHM-PD----VVAHTAVI 129 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~-------~ll~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~li 129 (257)
..+...|+++.|.++++...+... .|+.. .+...+...|++++|.+.|+...+.... ++ ..+|+.+-
T Consensus 83 ~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg 162 (293)
T 3u3w_A 83 IMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIA 162 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 456788999999999999887432 33321 2445556678999999999999874322 23 33789999
Q ss_pred HHHHhcCChHHHHHHHHHHHHC-----CCCC-CHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHh----CCCCCC-HH
Q 043311 130 EAYASAGQGKEALRVFMRMLAS-----GVAP-NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG----KGMRPN-AG 198 (257)
Q Consensus 130 ~~~~~~~~~~~a~~~~~~m~~~-----g~~~-~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~----~g~~p~-~~ 198 (257)
..|...|++++|...|++..+. +..+ ...+|..+-..|.+.|+ +++|.+.+++..+ .+..+. ..
T Consensus 163 ~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~-----y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 163 NIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR-----YEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 9999999999999999998741 2222 23478888888999555 9999999887653 333333 56
Q ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHH
Q 043311 199 TYTAVFEAFVRAQ-KVDEARGLLQQMKA 225 (257)
Q Consensus 199 ~~~~li~~~~~~~-~~~~a~~~~~~m~~ 225 (257)
.|..+-..|.+.| ..++|.+.+++...
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 7888888999999 56999999988764
No 94
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.22 E-value=5.9e-06 Score=66.20 Aligned_cols=190 Identities=12% Similarity=0.010 Sum_probs=136.1
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCC-CCc-------HHHHHHHHHhcCC--------------------hHHHHHHHHHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGL-TNN-------AVKMFDALSKDGL--------------------THEALQLFAQIK 114 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~-~p~-------~~~ll~~~~~~~~--------------------~~~a~~~~~~m~ 114 (257)
..+...|+++.|...+.+..+..- .++ ...+-..|...|+ +++|.+.|++..
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 677889999999999988765211 111 1136677788888 899998887764
Q ss_pred hC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHhccCCcchhHHHHHHH
Q 043311 115 DK----GHMP-DVVAHTAVIEAYASAGQGKEALRVFMRMLAS----G-VAPNAYTYAVLIKGLAAAADGNAKILGDAQKY 184 (257)
Q Consensus 115 ~~----g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g-~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~ 184 (257)
+. +..+ ...++..+-..|...|++++|...|++..+. + ......++..+...+...|+ +++|...
T Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----~~~A~~~ 245 (338)
T 3ro2_A 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE-----FETASEY 245 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC-----HHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC-----HHHHHHH
Confidence 32 2112 2457888888999999999999999987643 1 11123477788888888444 9999999
Q ss_pred HHHHHh----CCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHhhcCCchhhHHhh
Q 043311 185 LMEMVG----KGMRPN-AGTYTAVFEAFVRAQKVDEARGLLQQMKAK----GF-VPDEKAVKEALIDKRGQGFRGVINIL 254 (257)
Q Consensus 185 ~~~m~~----~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~t~~~ll~~~~~~g~~~~~~~l 254 (257)
+++... .+..+. ..++..+-..+...|++++|...+++.... +- .....++..+-..+...|+.+.|..+
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 887653 111111 456788889999999999999999988653 11 11244677788889999999999998
Q ss_pred hcC
Q 043311 255 FGK 257 (257)
Q Consensus 255 ~~k 257 (257)
|++
T Consensus 326 ~~~ 328 (338)
T 3ro2_A 326 AEK 328 (338)
T ss_dssp HHH
T ss_pred HHH
Confidence 863
No 95
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.21 E-value=2.9e-05 Score=64.27 Aligned_cols=186 Identities=8% Similarity=0.008 Sum_probs=132.8
Q ss_pred ccccCCCCHHHHHHHHHHHHhC--CC---CCcHH----HHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTE--GL---TNNAV----KMFDALSKDGLTHEALQLFAQIKDK----GHMP-DVVAHTAV 128 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~--~~---~p~~~----~ll~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~l 128 (257)
..+...|+++.|...+....+. .. .+... .+-.+|...|++++|.+.|....+. +-.+ ...+++.+
T Consensus 149 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 228 (378)
T 3q15_A 149 EAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNI 228 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6778899999999999887762 11 11111 3667888999999999999877642 2111 23577888
Q ss_pred HHHHHhcCChHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhC----CCCCCHHH
Q 043311 129 IEAYASAGQGKEALRVFMRMLA-----SGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK----GMRPNAGT 199 (257)
Q Consensus 129 i~~~~~~~~~~~a~~~~~~m~~-----~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~----g~~p~~~~ 199 (257)
=.+|...|++++|...|++..+ .. +....++..+-..+.+.|+ +++|...+++..+. +-+.....
T Consensus 229 g~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~-----~~~A~~~~~~al~~~~~~~~~~~~~~ 302 (378)
T 3q15_A 229 ANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQ-----TQKAFQFIEEGLDHITARSHKFYKEL 302 (378)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHCCTTCCSCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8889999999999999998876 33 3347788888889999555 99999999987642 22222345
Q ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 200 YTAVFEAFVRAQK---VDEARGLLQQMKAKGFVPD-EKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 200 ~~~li~~~~~~~~---~~~a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
++.+-..|...++ +.+|..++++ .+..|+ ...+..+-..+...|+.+.|..+|+|
T Consensus 303 ~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~ 361 (378)
T 3q15_A 303 FLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRK 361 (378)
T ss_dssp HHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6666666777788 6666666665 333333 34555677789999999999998864
No 96
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.21 E-value=0.00017 Score=55.10 Aligned_cols=156 Identities=12% Similarity=0.079 Sum_probs=110.7
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCC-CCcH----HHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCH-HHHHHHHHHHHh-
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGL-TNNA----VKMFDALSKDGLTHEALQLFAQIKDKGH-MPDV-VAHTAVIEAYAS- 134 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~-~p~~----~~ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~~-~~~~~li~~~~~- 134 (257)
..+.+.|++++|...|+.+.+..- .|.. ..+..+|.+.|++++|...|+...+... .+.. ..+..+-.++..
T Consensus 12 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~ 91 (225)
T 2yhc_A 12 QQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMAL 91 (225)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhh
Confidence 456678999999999999987432 3321 2477899999999999999999887532 1221 133333333332
Q ss_pred -----------------cCChHHHHHHHHHHHHCCCCCCH-HHHH-----------------HHHHHHHhccCCcchhHH
Q 043311 135 -----------------AGQGKEALRVFMRMLASGVAPNA-YTYA-----------------VLIKGLAAAADGNAKILG 179 (257)
Q Consensus 135 -----------------~~~~~~a~~~~~~m~~~g~~~~~-~t~~-----------------~ll~~~~~~~~~~~~~~~ 179 (257)
.|++++|...|++..+. .|+. ..+. .+-..+.+ .|+++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~-----~~~~~ 164 (225)
T 2yhc_A 92 DDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTE-----RGAWV 164 (225)
T ss_dssp HC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HTCHH
T ss_pred hhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCcHH
Confidence 57899999999999875 2332 2221 23334556 45599
Q ss_pred HHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 043311 180 DAQKYLMEMVGKGMRPNA----GTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227 (257)
Q Consensus 180 ~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 227 (257)
.|...|+.+.+. .|+. ..+..+..+|.+.|+.++|.+.++.+...+
T Consensus 165 ~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 165 AVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 999999998864 3443 467788899999999999999999998764
No 97
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.20 E-value=1.5e-05 Score=58.64 Aligned_cols=155 Identities=10% Similarity=0.032 Sum_probs=111.7
Q ss_pred ccccCCCCHHHHHHHHHHHHhCC-CCCcH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCChH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEG-LTNNA-VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA-YASAGQGK 139 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~-~~p~~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-~~~~~~~~ 139 (257)
..+.+.|++++|...|+...+.. -.+.. ..+-.++.+.|++++|...|+...+.. |+...+..+-.. +...++..
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~ 91 (176)
T 2r5s_A 14 SELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQAAES 91 (176)
T ss_dssp HHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhcccc
Confidence 56778899999999999877632 12222 247778899999999999999876643 344433322111 22323344
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 043311 140 EALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQKVDEARG 218 (257)
Q Consensus 140 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~ 218 (257)
+|...|++..+.. +-+...+..+-..+...| ++++|...|+...+..-.+ +...+..+...+...|+.++|..
T Consensus 92 ~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g-----~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 92 PELKRLEQELAAN-PDNFELACELAVQYNQVG-----RDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc-----cHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 5788888887652 336788889999999944 4999999999988753222 35688889999999999999999
Q ss_pred HHHHHHH
Q 043311 219 LLQQMKA 225 (257)
Q Consensus 219 ~~~~m~~ 225 (257)
.|++...
T Consensus 166 ~y~~al~ 172 (176)
T 2r5s_A 166 KYRRQLY 172 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987654
No 98
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.20 E-value=7.3e-05 Score=61.85 Aligned_cols=188 Identities=9% Similarity=-0.063 Sum_probs=132.4
Q ss_pred ccccCCCCHHHHHHHHHHHHhCC-CCCcHH-------HHHHHHHhcCChHHHHHHHHHHHhC----CC-CC-CHHHHHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEG-LTNNAV-------KMFDALSKDGLTHEALQLFAQIKDK----GH-MP-DVVAHTAV 128 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~-------~ll~~~~~~~~~~~a~~~~~~m~~~----g~-~p-~~~~~~~l 128 (257)
..+...|+++.|...|....+.- -.++.. .+-.+|...|+++.|...+.+..+. +- .+ ...+++.+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 45678999999999999988642 122211 3677888999999999998877542 11 11 24578888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHh----CCCCCCHHH
Q 043311 129 IEAYASAGQGKEALRVFMRMLAS----GVA-PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG----KGMRPNAGT 199 (257)
Q Consensus 129 i~~~~~~~~~~~a~~~~~~m~~~----g~~-~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~----~g~~p~~~~ 199 (257)
=..|...|++++|...|++..+. +-. ....++..+-..|...| ++++|...|++..+ .+.+....+
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~-----~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSG-----DDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-----CHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 88999999999999999887653 111 12356777778888844 49999999988765 122223567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHhhcCCc---hhhHHhhh
Q 043311 200 YTAVFEAFVRAQKVDEARGLLQQMKAKG----FVPDEKAVKEALIDKRGQGF---RGVINILF 255 (257)
Q Consensus 200 ~~~li~~~~~~~~~~~a~~~~~~m~~~g----~~p~~~t~~~ll~~~~~~g~---~~~~~~l~ 255 (257)
+..+-..|.+.|++++|...+++..+.. -......+..+-..+...|+ ...+..++
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~ 326 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF 326 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 8888899999999999999999988642 22223345555555666776 55555554
No 99
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.20 E-value=3.9e-05 Score=68.85 Aligned_cols=171 Identities=11% Similarity=-0.035 Sum_probs=128.8
Q ss_pred cCCCCHHHHHHHHHHHHh------CCCCCcH----HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 043311 66 EEPTDPRNLQEIFHKMRT------EGLTNNA----VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASA 135 (257)
Q Consensus 66 ~~~~~~~~a~~~~~~m~~------~~~~p~~----~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 135 (257)
...|++++|.+.++...+ ....|+. ..+-.+|.+.|++++|.+.|+...+.. .-+...|..+=.+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 788999999999999881 1122332 236678889999999999999988742 23567888888999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 043311 136 GQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDE 215 (257)
Q Consensus 136 ~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 215 (257)
|++++|...|++..+.. +-+...|..+-..+...|+ +++ .+.|+...+.. +-+...|..+-..+.+.|++++
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~-----~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~ 552 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGN-----TDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVG 552 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTC-----CCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCC-----hHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHH
Confidence 99999999999988763 3366788888888888555 777 88888776531 2256788889999999999999
Q ss_pred HHHHHHHHHHCCCCCC-HHHHHHHHHHhhcCCc
Q 043311 216 ARGLLQQMKAKGFVPD-EKAVKEALIDKRGQGF 247 (257)
Q Consensus 216 a~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~g~ 247 (257)
|...|++..+ +.|+ ...+..+..++...|.
T Consensus 553 A~~~~~~al~--l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 553 AVRTLDEVPP--TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHTSCT--TSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHhhcc--cCcccHHHHHHHHHHHHccCC
Confidence 9999998765 3465 4566666666655443
No 100
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.18 E-value=0.00016 Score=51.80 Aligned_cols=124 Identities=11% Similarity=-0.002 Sum_probs=92.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~ 172 (257)
+-..+...|+++.|...|+...+.. +.+..+|..+-.++...|++++|...|++..+.. +.+...|..+-..+...|+
T Consensus 19 ~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~ 96 (166)
T 1a17_A 19 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 96 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcc
Confidence 5567788999999999999887642 2357788888888999999999999999888753 3467788888888888444
Q ss_pred CcchhHHHHHHHHHHHHhCCCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHH
Q 043311 173 GNAKILGDAQKYLMEMVGKGMRPNAGTYTA--VFEAFVRAQKVDEARGLLQQMK 224 (257)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~--li~~~~~~~~~~~a~~~~~~m~ 224 (257)
+++|.+.|+...+.. +-+...+.. +...+.+.|++++|...+....
T Consensus 97 -----~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 97 -----FRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp -----HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 999999998877542 123344433 3344777889999999888764
No 101
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.18 E-value=0.00016 Score=57.61 Aligned_cols=160 Identities=8% Similarity=-0.073 Sum_probs=115.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCC-H----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCC--HHHHH
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGHMPD-V----VAHTAVIEAYASAGQGKEALRVFMRMLASGV---APN--AYTYA 161 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~---~~~--~~t~~ 161 (257)
..+..+...|++++|.+.+....+.....+ . ..+..+-..+...|++++|...|++..+... .+. ..+|+
T Consensus 80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 2qfc_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 357788899999999999988776532211 1 2234455567778899999999998875321 222 45888
Q ss_pred HHHHHHHhccCCcchhHHHHHHHHHHHHh----CCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-
Q 043311 162 VLIKGLAAAADGNAKILGDAQKYLMEMVG----KGMRP--NAGTYTAVFEAFVRAQKVDEARGLLQQMKAK----GFVP- 230 (257)
Q Consensus 162 ~ll~~~~~~~~~~~~~~~~a~~~~~~m~~----~g~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p- 230 (257)
.+-..|...|+ +++|...|++..+ .+-.+ ...+|+.+-..|...|++++|..++++..+. +...
T Consensus 160 ~lg~~y~~~~~-----~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 160 AIANIYAENGY-----LKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHTTC-----HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHcCC-----HHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 88889998555 9999999988762 21111 1257888889999999999999999988653 2111
Q ss_pred CHHHHHHHHHHhhcCCchhhH-Hhhhc
Q 043311 231 DEKAVKEALIDKRGQGFRGVI-NILFG 256 (257)
Q Consensus 231 ~~~t~~~ll~~~~~~g~~~~~-~~l~~ 256 (257)
-..+|..+-..+...|+.+.| ...|+
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~ 261 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYK 261 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 156788888889999999888 66554
No 102
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.17 E-value=0.00016 Score=48.77 Aligned_cols=107 Identities=21% Similarity=0.215 Sum_probs=81.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcc
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA 171 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~ 171 (257)
.+...+...|++++|.++|+...+.. +.+..+|..+...+.+.|++++|..+|+++.+.. +.+..++..+...+...|
T Consensus 14 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 91 (125)
T 1na0_A 14 NLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQG 91 (125)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhc
Confidence 36677888999999999999887752 2357788889999999999999999999988763 446788888888898844
Q ss_pred CCcchhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 043311 172 DGNAKILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAF 207 (257)
Q Consensus 172 ~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~ 207 (257)
+ +++|...|+...+. .| +...+..+-..+
T Consensus 92 ~-----~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 92 D-----YDEAIEYYQKALEL--DPNNAEAKQNLGNAK 121 (125)
T ss_dssp C-----HHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred C-----HHHHHHHHHHHHHh--CCCcHHHHHHHHHHH
Confidence 4 99999999988764 23 334444444433
No 103
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.17 E-value=0.00014 Score=49.47 Aligned_cols=118 Identities=9% Similarity=-0.024 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHH
Q 043311 122 VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYT 201 (257)
Q Consensus 122 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 201 (257)
...|..+-..+...|++++|...|++..+.. +.+...|..+...+...|+ +++|.+.++...... +.+...+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~-----~~~A~~~~~~~~~~~-~~~~~~~~ 84 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGN-----YAGAVQDCERAICID-PAYSKAYG 84 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhc-----hHHHHHHHHHHHhcC-ccCHHHHH
Confidence 3455555666666666666666666665542 2345566666666666333 666666666655431 22345566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCc
Q 043311 202 AVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGF 247 (257)
Q Consensus 202 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 247 (257)
.+-..+...|++++|...|++..+.. +.+...+..+...+...|+
T Consensus 85 ~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 85 RMGLALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 66666666677777777776666542 1244445555445544443
No 104
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.15 E-value=7e-05 Score=53.68 Aligned_cols=127 Identities=11% Similarity=-0.049 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHH
Q 043311 122 VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYT 201 (257)
Q Consensus 122 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 201 (257)
...|..+-..+...|++++|...|++..+.. +.+..+|..+...+...|+ +++|...++...... +.+...|.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~-----~~~A~~~~~~a~~~~-~~~~~~~~ 85 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTEC-----YGYALGDATRAIELD-KKYIKGYY 85 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHhC-cccHHHHH
Confidence 4567777788899999999999999988753 4468888888888988544 999999999887642 33567888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHhhcCCchhhHHhhhc
Q 043311 202 AVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAV--KEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 202 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~--~~ll~~~~~~g~~~~~~~l~~ 256 (257)
.+-..+...|++++|...|++..+.. +-+...+ ......+...|+.+.|..++.
T Consensus 86 ~~a~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 141 (166)
T 1a17_A 86 RRAASNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 141 (166)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 88899999999999999999998753 2244444 334444778899888887764
No 105
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.15 E-value=8.5e-05 Score=55.84 Aligned_cols=124 Identities=11% Similarity=-0.053 Sum_probs=100.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 043311 124 AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAV 203 (257)
Q Consensus 124 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 203 (257)
.+..+-..+...|++++|...|++. +.|+...|..+-..+...|+ +++|.+.|+...... +.+...|..+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~-----~~~A~~~~~~al~~~-~~~~~~~~~l 77 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKN-----MTEAEKAFTRSINRD-KHLAVAYFQR 77 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHhC-ccchHHHHHH
Confidence 3445566788899999999999876 46788999999999999555 999999999887642 3356788889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCC--------------CC-CHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 204 FEAFVRAQKVDEARGLLQQMKAKGF--------------VP-DEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 204 i~~~~~~~~~~~a~~~~~~m~~~g~--------------~p-~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
-..|...|++++|...|++..+..- .| +...+..+-..+...|+.+.|...|++
T Consensus 78 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 146 (213)
T 1hh8_A 78 GMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL 146 (213)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999999999999999988531 11 236778888899999999999988753
No 106
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.14 E-value=0.00016 Score=68.61 Aligned_cols=169 Identities=13% Similarity=0.166 Sum_probs=95.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCcHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 043311 67 EPTDPRNLQEIFHKMRTEGLTNNAV-KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVF 145 (257)
Q Consensus 67 ~~~~~~~a~~~~~~m~~~~~~p~~~-~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 145 (257)
..+++++|.++.++.. .|..+ .+-.++.+.|++++|.+.|..- -|...|..++.+|.+.|++++|.+.|
T Consensus 1088 ~i~nldrAiE~Aervn----~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL 1157 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERCN----EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYL 1157 (1630)
T ss_pred HHhhHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5666666666666441 12222 3556666666666666666432 25566666666666666666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhccC-----------------------CcchhHHHHHHHHHHHHhCCCCCCHHHHHH
Q 043311 146 MRMLASGVAPNAYTYAVLIKGLAAAAD-----------------------GNAKILGDAQKYLMEMVGKGMRPNAGTYTA 202 (257)
Q Consensus 146 ~~m~~~g~~~~~~t~~~ll~~~~~~~~-----------------------~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 202 (257)
..-++.. ++....+.+..+|++.+. .+.|.++.|..+|+.. ..|..
T Consensus 1158 ~mArk~~--~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~r 1226 (1630)
T 1xi4_A 1158 QMARKKA--RESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGR 1226 (1630)
T ss_pred HHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHH
Confidence 5433332 222112224444444322 1134466677666663 47888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC------------------------CCCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 203 VFEAFVRAQKVDEARGLLQQMKAK------------------------GFVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 203 li~~~~~~~~~~~a~~~~~~m~~~------------------------g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
+...+++.|++++|.+.+++..+. ++..+...+..++..|.+.|.++.+..+++
T Consensus 1227 LA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE 1304 (1630)
T 1xi4_A 1227 LASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLE 1304 (1630)
T ss_pred HHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888888888888888887765221 112233445555556666666666666654
No 107
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.14 E-value=1.8e-05 Score=58.93 Aligned_cols=153 Identities=14% Similarity=0.026 Sum_probs=87.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCcHH----HHHHHHHhcCChHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcCC
Q 043311 67 EPTDPRNLQEIFHKMRTEGLTNNAV----KMFDALSKDGLTHEALQLFAQIKD----KGHMP-DVVAHTAVIEAYASAGQ 137 (257)
Q Consensus 67 ~~~~~~~a~~~~~~m~~~~~~p~~~----~ll~~~~~~~~~~~a~~~~~~m~~----~g~~p-~~~~~~~li~~~~~~~~ 137 (257)
..|++++|.++++.+.... +... .+-..+...|++++|...|++..+ .+..+ ...++..+-..|...|+
T Consensus 4 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHP--ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ---CHHHHHHHHHHHHTST--TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccHHHHHHHHHHhcCCh--HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4677777777554443321 1111 355566677777777777776654 12222 23456666667777777
Q ss_pred hHHHHHHHHHHHHCC--C--CC--CHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHH
Q 043311 138 GKEALRVFMRMLASG--V--AP--NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG----KGMRPN-AGTYTAVFEA 206 (257)
Q Consensus 138 ~~~a~~~~~~m~~~g--~--~~--~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~----~g~~p~-~~~~~~li~~ 206 (257)
+++|...|++..+.- . .+ ....+..+-..+...|+ +++|...+++... .+.... ..++..+-..
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-----~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 156 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGD-----LAGARQEYEKSLVYAQQADDQVAIACAFRGLGDL 156 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCC-----HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 777777777777751 1 11 23445566666666333 7777777776542 111111 1234556666
Q ss_pred HHHcCCHHHHHHHHHHHHHC
Q 043311 207 FVRAQKVDEARGLLQQMKAK 226 (257)
Q Consensus 207 ~~~~~~~~~a~~~~~~m~~~ 226 (257)
+...|++++|.+.+++..+.
T Consensus 157 ~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 157 AQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCcCHHHHHHHHHHHHHH
Confidence 77777777777777776543
No 108
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.12 E-value=6.1e-05 Score=60.09 Aligned_cols=152 Identities=9% Similarity=0.003 Sum_probs=118.7
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCC-CCcHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhcCChH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGL-TNNAV-KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIE-AYASAGQGK 139 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~-~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~-~~~~~~~~~ 139 (257)
..+.+.|++++|...|+...+..- .+... .+-..+.+.|++++|..+|+...+. .|+......... .+...++.+
T Consensus 125 ~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l~~~~~~~ 202 (287)
T 3qou_A 125 MQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIELLXQAADT 202 (287)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHHHhhcccC
Confidence 666789999999999999887432 22222 4788899999999999999988764 355543333332 366777888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCCHHHH
Q 043311 140 EALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN---AGTYTAVFEAFVRAQKVDEA 216 (257)
Q Consensus 140 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~~~~~~a 216 (257)
+|...|++..+.. +.+...+..+-..+.. .|++++|...|...... .|+ ...+..+...+...|+.++|
T Consensus 203 ~a~~~l~~al~~~-P~~~~~~~~la~~l~~-----~g~~~~A~~~l~~~l~~--~p~~~~~~a~~~l~~~~~~~g~~~~a 274 (287)
T 3qou_A 203 PEIQQLQQQVAEN-PEDAALATQLALQLHQ-----VGRNEEALELLFGHLRX--DLTAADGQTRXTFQEILAALGTGDAL 274 (287)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHH--CTTGGGGHHHHHHHHHHHHHCTTCHH
T ss_pred ccHHHHHHHHhcC-CccHHHHHHHHHHHHH-----cccHHHHHHHHHHHHhc--ccccccchHHHHHHHHHHHcCCCCcH
Confidence 8999999988763 4578889999999999 45599999999998864 343 56799999999999999999
Q ss_pred HHHHHHHH
Q 043311 217 RGLLQQMK 224 (257)
Q Consensus 217 ~~~~~~m~ 224 (257)
...|++..
T Consensus 275 ~~~~r~al 282 (287)
T 3qou_A 275 ASXYRRQL 282 (287)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988764
No 109
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.12 E-value=6.1e-05 Score=56.98 Aligned_cols=150 Identities=11% Similarity=0.012 Sum_probs=107.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHH----------------HHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 043311 94 FDALSKDGLTHEALQLFAQIKDKGHMPD-VVAHTA----------------VIEAYASAGQGKEALRVFMRMLASGVAPN 156 (257)
Q Consensus 94 l~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~----------------li~~~~~~~~~~~a~~~~~~m~~~g~~~~ 156 (257)
-..+.+.|++++|...|+...+. .|+ ...|.. +-.+|.+.|++++|...|++..+.. +-+
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~ 87 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PNN 87 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCC
Confidence 34667899999999999998774 343 345655 7888999999999999999998763 347
Q ss_pred HHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCHH
Q 043311 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQK--VDEARGLLQQMKAKGFVPDEK 233 (257)
Q Consensus 157 ~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~ 233 (257)
...|..+-..+...| ++++|...|+...+. .| +...|..+-..|...|+ ...+...++... .|+..
T Consensus 88 ~~~~~~lg~~~~~~g-----~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 156 (208)
T 3urz_A 88 VDCLEACAEMQVCRG-----QEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS----SPTKM 156 (208)
T ss_dssp HHHHHHHHHHHHHHT-----CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCHH
T ss_pred HHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh----CCCch
Confidence 788999999999944 499999999998864 34 45677777777765543 445555565543 45543
Q ss_pred H--HHHHHHHhhcCCchhhHHhhhcC
Q 043311 234 A--VKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 234 t--~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
. +...-.++...|+.+.|...|+|
T Consensus 157 ~~a~~~~g~~~~~~~~~~~A~~~~~~ 182 (208)
T 3urz_A 157 QYARYRDGLSKLFTTRYEKARNSLQK 182 (208)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 3 33333455667888888887764
No 110
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.11 E-value=8.7e-05 Score=61.03 Aligned_cols=189 Identities=11% Similarity=-0.050 Sum_probs=130.5
Q ss_pred ccccCCCCHHHHHHHHHHHHhC----CCC--CcHH----HHHHHHHhcCChHHHHHHHHHHHhCCCC--C--CHHHHHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTE----GLT--NNAV----KMFDALSKDGLTHEALQLFAQIKDKGHM--P--DVVAHTAV 128 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~----~~~--p~~~----~ll~~~~~~~~~~~a~~~~~~m~~~g~~--p--~~~~~~~l 128 (257)
..+...|++++|...+++..+. +.. |... .+-..+...|++++|...+++..+.... + ...+|..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 6677899999999999887752 222 3322 2556788999999999999987654221 1 23567788
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHH----HHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCC---HHH
Q 043311 129 IEAYASAGQGKEALRVFMRMLASGVAPN--AYTYA----VLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN---AGT 199 (257)
Q Consensus 129 i~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~t~~----~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~ 199 (257)
-..+...|++++|...+++.....-.++ ..... .....+... |+++.|...++........++ ...
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMT-----GDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHC-----CCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 8889999999999999998875311111 11111 223336674 449999999988765322111 235
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHhhcCCchhhHHhhhc
Q 043311 200 YTAVFEAFVRAQKVDEARGLLQQMKAK----GFVPDE-KAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 200 ~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~~-~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
+..+...+...|++++|...+++.... |..++. ..+..+-.++...|+.+.|...|+
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~ 317 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLL 317 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 667788899999999999999988643 322233 255556667889999999888764
No 111
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.09 E-value=5.4e-05 Score=67.97 Aligned_cols=149 Identities=12% Similarity=-0.040 Sum_probs=124.0
Q ss_pred HhcCChHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043311 98 SKDGLTHEALQLFAQIK--------DKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAA 169 (257)
Q Consensus 98 ~~~~~~~~a~~~~~~m~--------~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~ 169 (257)
...|++++|.+.|+... +. ...+...|..+-.+|...|++++|...|++..+.+ +-+...|..+-..+..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 77899999999999987 32 23356788888899999999999999999998753 3477888888888988
Q ss_pred ccCCcchhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCch
Q 043311 170 AADGNAKILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFR 248 (257)
Q Consensus 170 ~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 248 (257)
. |++++|.+.|++..+. .| +...|..+-..+.+.|++++ .+.|++..+.. .-+...+..+-.++...|+.
T Consensus 480 ~-----g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~ 550 (681)
T 2pzi_A 480 T-----GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDR 550 (681)
T ss_dssp H-----TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred c-----CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCH
Confidence 4 4499999999998764 34 56778889999999999999 99999998754 33677888899999999999
Q ss_pred hhHHhhhcC
Q 043311 249 GVINILFGK 257 (257)
Q Consensus 249 ~~~~~l~~k 257 (257)
+.|...|+|
T Consensus 551 ~~A~~~~~~ 559 (681)
T 2pzi_A 551 VGAVRTLDE 559 (681)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998875
No 112
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.08 E-value=0.00017 Score=49.36 Aligned_cols=99 Identities=12% Similarity=0.005 Sum_probs=56.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHH
Q 043311 121 DVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTY 200 (257)
Q Consensus 121 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 200 (257)
+...|..+-..+...|++++|...|++..+.. +.+...|..+...+... |++++|.+.++...+.. +.+...+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~-----~~~~~A~~~~~~a~~~~-~~~~~~~ 87 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKL-----LEFQLALKDCEECIQLE-PTFIKGY 87 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTT-----TCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHhC-CCchHHH
Confidence 34455556666666666666666666665542 22455555555555553 33666666666655421 2244556
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 043311 201 TAVFEAFVRAQKVDEARGLLQQMKAK 226 (257)
Q Consensus 201 ~~li~~~~~~~~~~~a~~~~~~m~~~ 226 (257)
..+-..+.+.|++++|.+.|++..+.
T Consensus 88 ~~la~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 88 TRKAAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 66666666666666666666666543
No 113
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.07 E-value=0.00025 Score=58.26 Aligned_cols=188 Identities=13% Similarity=0.052 Sum_probs=103.5
Q ss_pred cccCCCCHHHHHHHHHHHHhCCCCCcHH-------HHHHHHHhcCChHHHHHHHHHHHhCCC-CCC----HHHHHHHHHH
Q 043311 64 VDEEPTDPRNLQEIFHKMRTEGLTNNAV-------KMFDALSKDGLTHEALQLFAQIKDKGH-MPD----VVAHTAVIEA 131 (257)
Q Consensus 64 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~-------~ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~ 131 (257)
.+...|+++.|...++......-..+.. .+-..+...|++++|...+++..+... ..+ ..++..+-..
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 4445677777777777766543222211 133456667777777777776543210 011 1234555666
Q ss_pred HHhcCChHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCC--CCC--CHHHH
Q 043311 132 YASAGQGKEALRVFMRMLAS----GVA--P-NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG--MRP--NAGTY 200 (257)
Q Consensus 132 ~~~~~~~~~a~~~~~~m~~~----g~~--~-~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g--~~p--~~~~~ 200 (257)
+...|++++|...+++..+. +.. | ...++..+-..+...|+ +++|...+++..... ..+ ....|
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-----~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR-----LDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcC-----HHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 77777777777777766532 211 2 23445555566666333 777777777655321 111 12456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHH----HHHHHhhcCCchhhHHhhhc
Q 043311 201 TAVFEAFVRAQKVDEARGLLQQMKAKGFVPD--EKAVK----EALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 201 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~t~~----~ll~~~~~~g~~~~~~~l~~ 256 (257)
..+-..+...|++++|...+++.....-.++ ..... .....+...|+.+.+..+++
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 239 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLR 239 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 6666777777788888777777764311111 11111 12233567777777766553
No 114
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.06 E-value=0.00011 Score=54.63 Aligned_cols=154 Identities=10% Similarity=-0.111 Sum_probs=109.1
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcc
Q 043311 97 LSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS----GVA-PNAYTYAVLIKGLAAAA 171 (257)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~-~~~~t~~~ll~~~~~~~ 171 (257)
....|++++|.++++.+... ......++..+-..+...|++++|...|++..+. |.. ....++..+-..+...|
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp -----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 35678999999966665442 2235678888889999999999999999887752 222 23467777888888855
Q ss_pred CCcchhHHHHHHHHHHHHh----CCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHH
Q 043311 172 DGNAKILGDAQKYLMEMVG----KGMRP--NAGTYTAVFEAFVRAQKVDEARGLLQQMKAK----GFVP-DEKAVKEALI 240 (257)
Q Consensus 172 ~~~~~~~~~a~~~~~~m~~----~g~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~t~~~ll~ 240 (257)
+ +++|...+++... .+-.| ....+..+-..+...|++++|...+++.... +-.. -..++..+-.
T Consensus 81 ~-----~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 155 (203)
T 3gw4_A 81 N-----WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGD 155 (203)
T ss_dssp C-----HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C-----HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 5 9999988887653 33222 2457999999999999999999999988743 2111 1234566777
Q ss_pred HhhcCCchhhHHhhhc
Q 043311 241 DKRGQGFRGVINILFG 256 (257)
Q Consensus 241 ~~~~~g~~~~~~~l~~ 256 (257)
.+...|+.+.|...|+
T Consensus 156 ~~~~~g~~~~A~~~~~ 171 (203)
T 3gw4_A 156 LAQQEKNLLEAQQHWL 171 (203)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHCcCHHHHHHHHH
Confidence 8899999999988775
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.06 E-value=7.5e-05 Score=60.09 Aligned_cols=172 Identities=16% Similarity=0.052 Sum_probs=119.0
Q ss_pred CCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChHHHH
Q 043311 68 PTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDK----GHMP-DVVAHTAVIEAYASAGQGKEAL 142 (257)
Q Consensus 68 ~~~~~~a~~~~~~m~~~~~~p~~~~ll~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~~~~~~a~ 142 (257)
.++++.|...|... ...|...|++++|.+.|....+. +-.. -..+|+.+-..|.+.|++++|.
T Consensus 29 ~~~~~~A~~~~~~a------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 96 (307)
T 2ifu_A 29 KPDYDSAASEYAKA------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAV 96 (307)
T ss_dssp SCCHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGH
T ss_pred CCCHHHHHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 47888898888875 35677888888888888766542 2111 1357888888888889999998
Q ss_pred HHHHHHHHC----CCCC-CHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHHcCC
Q 043311 143 RVFMRMLAS----GVAP-NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG----KGMRP-NAGTYTAVFEAFVRAQK 212 (257)
Q Consensus 143 ~~~~~m~~~----g~~~-~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~----~g~~p-~~~~~~~li~~~~~~~~ 212 (257)
..|++-.+. |-.. -..+|+.+-..|.. |+ ++.|...|++..+ .|-.+ ...+++.+-..|.+.|+
T Consensus 97 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~-----~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 170 (307)
T 2ifu_A 97 QYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LD-----LSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQK 170 (307)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CC-----HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCC
Confidence 888875532 2111 13567777777766 66 8888887776542 22222 26788888899999999
Q ss_pred HHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 213 VDEARGLLQQMKAK----GFVPD-EKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 213 ~~~a~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
+++|...|++.... +..++ ...+..+...+...|+.+.|...|++
T Consensus 171 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 171 FDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999998888753 22222 23566666677778888888887753
No 116
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.03 E-value=0.00029 Score=66.96 Aligned_cols=163 Identities=13% Similarity=0.206 Sum_probs=119.6
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHH-HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAVKMFDAL-SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEA 141 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ll~~~-~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 141 (257)
..+...|.+++|..+|++.. .++. -+..+ -..+++++|.++.+... +..+|..+=.++.+.|++++|
T Consensus 1057 ~Iai~lglyEEAf~IYkKa~----~~~~--A~~VLie~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1057 NIAISNELFEEAFAIFRKFD----VNTS--AVQVLIEHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHcC----CHHH--HHHHHHHHHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHH
Confidence 78889999999999999963 1221 12222 37889999999988652 478899999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 043311 142 LRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ 221 (257)
Q Consensus 142 ~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 221 (257)
.+.|.+- -|...|.-++..|.+.|+ ++++.++|..-.+.. ++....+.+..+|++.+++++...+.+
T Consensus 1125 IdsYiKA------dD~say~eVa~~~~~lGk-----yEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI~ 1191 (1630)
T 1xi4_A 1125 IDSYIKA------DDPSSYMEVVQAANTSGN-----WEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFIN 1191 (1630)
T ss_pred HHHHHhc------CChHHHHHHHHHHHHcCC-----HHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHHh
Confidence 9999553 488899999999999555 999999998766543 333333347777888877775444421
Q ss_pred HHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 222 QMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 222 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
.++...|..+-..|...|+++.|..+|.+
T Consensus 1192 -------~~n~ad~~~iGd~le~eg~YeeA~~~Y~k 1220 (1630)
T 1xi4_A 1192 -------GPNNAHIQQVGDRCYDEKMYDAAKLLYNN 1220 (1630)
T ss_pred -------CCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Confidence 34555666666677777777777776653
No 117
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.01 E-value=0.00064 Score=54.08 Aligned_cols=157 Identities=8% Similarity=0.004 Sum_probs=114.7
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHH--------HHHHHHHhcCChHHHHHHHHHHHhCCC---CCC--HHHHHHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAV--------KMFDALSKDGLTHEALQLFAQIKDKGH---MPD--VVAHTAVI 129 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--------~ll~~~~~~~~~~~a~~~~~~m~~~g~---~p~--~~~~~~li 129 (257)
..+...|++++|.+.+....+........ .+...+...|++++|.+.|....+... .+. ..+|+.+-
T Consensus 83 ~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg 162 (293)
T 2qfc_A 83 IMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIA 162 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 45678999999999998887754332211 144556778899999999998875321 122 45889999
Q ss_pred HHHHhcCChHHHHHHHHHHHH---C-CCCC--CHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHh----CCCCCC-HH
Q 043311 130 EAYASAGQGKEALRVFMRMLA---S-GVAP--NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG----KGMRPN-AG 198 (257)
Q Consensus 130 ~~~~~~~~~~~a~~~~~~m~~---~-g~~~--~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~----~g~~p~-~~ 198 (257)
..|...|++++|...|++..+ . +-.+ ...+|..+-..|...|+ +++|...+++..+ .+.... ..
T Consensus 163 ~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~-----y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 163 NIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR-----YEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhh-----HHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 999999999999999998762 2 1111 22688888889999555 9999999988653 222222 56
Q ss_pred HHHHHHHHHHHcCCHHHH-HHHHHHHH
Q 043311 199 TYTAVFEAFVRAQKVDEA-RGLLQQMK 224 (257)
Q Consensus 199 ~~~~li~~~~~~~~~~~a-~~~~~~m~ 224 (257)
+|..+-..|.+.|+.++| ...+++..
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 788888999999999999 77777764
No 118
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.01 E-value=0.00049 Score=52.13 Aligned_cols=160 Identities=11% Similarity=-0.016 Sum_probs=118.7
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHhcC----ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDG----LTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS---- 134 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ll~~~~~~~----~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~---- 134 (257)
..+...+++++|.+.|+...+.|...-...|-..|.. + +.++|.+.|+...+.| +...+..|=..|..
T Consensus 26 ~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~ 101 (212)
T 3rjv_A 26 DTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLARVLVNRQAG 101 (212)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGS
T ss_pred HHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCC
Confidence 5555679999999999999998754333345555665 6 8999999999998865 67777777777777
Q ss_pred cCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-C-
Q 043311 135 AGQGKEALRVFMRMLASGVA-PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA-Q- 211 (257)
Q Consensus 135 ~~~~~~a~~~~~~m~~~g~~-~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-~- 211 (257)
.+++++|+.+|++-.+.|.. .+...+..|-..|.. |.+..+.+++|..+|+...+. ..+...+..|-..|... |
T Consensus 102 ~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~-g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg 178 (212)
T 3rjv_A 102 ATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYAS-GVHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKG 178 (212)
T ss_dssp SCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHH-TSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTT
T ss_pred ccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHc-CCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCC
Confidence 78999999999999876532 125666666666665 111234499999999998765 23455666666677653 3
Q ss_pred ----CHHHHHHHHHHHHHCCCC
Q 043311 212 ----KVDEARGLLQQMKAKGFV 229 (257)
Q Consensus 212 ----~~~~a~~~~~~m~~~g~~ 229 (257)
+.++|...|++..+.|..
T Consensus 179 ~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 179 FIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp TBCCCHHHHHHHHHHHHHHTCH
T ss_pred CCCCCHHHHHHHHHHHHHcCCH
Confidence 899999999999988753
No 119
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.00 E-value=0.00017 Score=52.61 Aligned_cols=121 Identities=10% Similarity=0.028 Sum_probs=73.5
Q ss_pred cccCCCCHHHHHHHHHHHHhCCC-CCcHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCh--
Q 043311 64 VDEEPTDPRNLQEIFHKMRTEGL-TNNAV-KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEA-YASAGQG-- 138 (257)
Q Consensus 64 ~~~~~~~~~~a~~~~~~m~~~~~-~p~~~-~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-~~~~~~~-- 138 (257)
.+...|+++.|...++...+..- .+... .+-.+|...|++++|...|+...+.. +.+...|..+-.+ +...|++
T Consensus 19 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 19 QFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 35567778888888777666432 22221 35666777788888888777776542 1245566666666 6677776
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhC
Q 043311 139 KEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191 (257)
Q Consensus 139 ~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~ 191 (257)
++|...|++..+.+ +-+...|..+-..+...|+ ++.|...|+...+.
T Consensus 98 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~-----~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 98 AQTRAMIDKALALD-SNEITALMLLASDAFMQAN-----YAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccc-----HHHHHHHHHHHHhh
Confidence 77777777777653 2345666667677777443 77777777776653
No 120
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.96 E-value=0.0004 Score=47.14 Aligned_cols=112 Identities=13% Similarity=0.075 Sum_probs=85.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~ 172 (257)
+...+...|+++.|...|+...+.. +.+...|..+-..+...|++++|...+++..+.. +.+...|..+...+...|+
T Consensus 18 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 95 (131)
T 2vyi_A 18 EGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSSLNK 95 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHhCC
Confidence 5667788999999999999887652 2367788888889999999999999999988753 3457788888888888544
Q ss_pred CcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 043311 173 GNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK 212 (257)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 212 (257)
++.|...|+...... +.+...+..+...+.+.|+
T Consensus 96 -----~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 96 -----HVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp -----HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred -----HHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 999999998877642 2255667667777766665
No 121
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.96 E-value=7.2e-05 Score=53.48 Aligned_cols=100 Identities=9% Similarity=0.003 Sum_probs=51.5
Q ss_pred ccCCCCHHHHHHHHHHHHhCCCCCcH----HHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChH
Q 043311 65 DEEPTDPRNLQEIFHKMRTEGLTNNA----VKMFDALSKDGLTHEALQLFAQIKDKGHMP-DVVAHTAVIEAYASAGQGK 139 (257)
Q Consensus 65 ~~~~~~~~~a~~~~~~m~~~~~~p~~----~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~ 139 (257)
+.+.|++++|...+...... .|+. ..+-..|.+.|++++|.+.|+...+. .| +..+|..+-.+|.+.|+++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchH
Confidence 34445555555555544432 2221 12455556666666666666655543 22 3455555555566666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043311 140 EALRVFMRMLASGVAPNAYTYAVLIKGLAA 169 (257)
Q Consensus 140 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~ 169 (257)
+|...|++..+.+ +-+...|..+-..+.+
T Consensus 83 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~ 111 (150)
T 4ga2_A 83 KAVECYRRSVELN-PTQKDLVLKIAELLCK 111 (150)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 6666665555432 2234555555555555
No 122
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.95 E-value=0.00067 Score=46.81 Aligned_cols=95 Identities=13% Similarity=0.080 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 043311 124 AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAV 203 (257)
Q Consensus 124 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 203 (257)
.|...=..|.+.|++++|...|++..+.. +.+...|..+-..+.+.|+ +++|.+.|+...+.. +.+...|..+
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~-----~~~A~~~~~~al~~~-p~~~~a~~~l 87 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLME-----FQRALDDCDTCIRLD-SKFIKGYIRK 87 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhcc-----HHHHHHHHHHHHHhh-hhhhHHHHHH
Confidence 34444445556666666666666655432 2345555555555665333 666666666554421 1234455556
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 043311 204 FEAFVRAQKVDEARGLLQQMKA 225 (257)
Q Consensus 204 i~~~~~~~~~~~a~~~~~~m~~ 225 (257)
-.++...|++++|.+.|++..+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 6666666666666666666655
No 123
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.93 E-value=0.00039 Score=56.74 Aligned_cols=124 Identities=15% Similarity=0.056 Sum_probs=101.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPD--------------VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAY 158 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~--------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 158 (257)
+-..|.+.|++++|...|+...+...... ...|..+-.+|.+.|++++|...|++..+.. +.+..
T Consensus 153 ~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 231 (336)
T 1p5q_A 153 RGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEK 231 (336)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHH
Confidence 66778899999999999999887532221 5889999999999999999999999998764 44788
Q ss_pred HHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHH-HHHHHHHH
Q 043311 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQKVDEA-RGLLQQMK 224 (257)
Q Consensus 159 t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a-~~~~~~m~ 224 (257)
.|..+-.++...|+ +++|...|+...+. .| +...+..+-..+.+.|+.+++ ..+|+.|.
T Consensus 232 a~~~lg~~~~~~g~-----~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 232 GLSRRGEAHLAVND-----FELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHTTC-----HHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC-----HHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999555 99999999998764 34 567788888899999999988 44666664
No 124
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.93 E-value=0.00014 Score=52.01 Aligned_cols=139 Identities=9% Similarity=-0.023 Sum_probs=104.3
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcc
Q 043311 97 LSKDGLTHEALQLFAQIKDKGHMPD-VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNA 175 (257)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~ 175 (257)
+...|++++|+..|...... .|+ ...+-.+=..|.+.|++++|...|++..+.. +-+...|..+-..+...|+
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~--- 80 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEEN--- 80 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC---
T ss_pred HHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCc---
Confidence 34567788888888876553 333 4456677788999999999999999998763 4478899999999999555
Q ss_pred hhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHCCCCC-CHHHHHHHHHHhhcCCc
Q 043311 176 KILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQKVDEARGL-LQQMKAKGFVP-DEKAVKEALIDKRGQGF 247 (257)
Q Consensus 176 ~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~-~~~m~~~g~~p-~~~t~~~ll~~~~~~g~ 247 (257)
+++|...|+...+. .| +...|..+-..|.+.|+++++.+. +++..+. .| +...|...-..+...|+
T Consensus 81 --~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 --TDKAVECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp --HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCCC
T ss_pred --hHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCc
Confidence 99999999998763 45 467888899999999999876665 5777663 45 45555555555666664
No 125
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.92 E-value=0.00027 Score=51.50 Aligned_cols=121 Identities=12% Similarity=0.043 Sum_probs=92.0
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhccCCcch
Q 043311 98 SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKG-LAAAADGNAK 176 (257)
Q Consensus 98 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~-~~~~~~~~~~ 176 (257)
...|++++|...|+...+.. +.+...|..+-..|...|++++|...|++..+.. +.+...|..+... +... |
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~-----~ 93 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQA-----S 93 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHT-----T
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhc-----C
Confidence 45678888888888876642 2467889999999999999999999999988753 3367777777777 6674 4
Q ss_pred hH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 043311 177 IL--GDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK 226 (257)
Q Consensus 177 ~~--~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 226 (257)
.+ ++|...|+...... +-+...+..+-..|...|++++|...|++..+.
T Consensus 94 ~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 94 QHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp TCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 47 99999999887642 224677888888999999999999999999876
No 126
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.91 E-value=0.0015 Score=43.27 Aligned_cols=98 Identities=15% Similarity=0.072 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHH
Q 043311 122 VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYT 201 (257)
Q Consensus 122 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 201 (257)
...|..+-..+...|++++|...|++..... +.+...|..+...+...|+ +++|...++...+.. +.+...+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~-----~~~A~~~~~~~~~~~-~~~~~~~~ 76 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGD-----YQKAYEDGCKTVDLK-PDWGKGYS 76 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhcc-----HHHHHHHHHHHHHhC-cccHHHHH
Confidence 3445555566666666666666666665542 2245556666666666333 666666666655431 12345566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC
Q 043311 202 AVFEAFVRAQKVDEARGLLQQMKAK 226 (257)
Q Consensus 202 ~li~~~~~~~~~~~a~~~~~~m~~~ 226 (257)
.+...+...|++++|.+.+++..+.
T Consensus 77 ~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 77 RKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 6666666677777777777666553
No 127
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.90 E-value=0.00053 Score=46.84 Aligned_cols=110 Identities=10% Similarity=0.015 Sum_probs=82.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~ 172 (257)
+-..+.+.|++++|.+.|+...+.. ..+...|..+-..|...|++++|...|++..+.. +.+...|..+-..+...|+
T Consensus 22 ~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~ 99 (133)
T 2lni_A 22 KGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALEAMKD 99 (133)
T ss_dssp HHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHHhh
Confidence 6677788999999999999887752 2367788888888999999999999999888753 3467888888888888444
Q ss_pred CcchhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcC
Q 043311 173 GNAKILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQ 211 (257)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~ 211 (257)
+++|.+.|+...+. .| +...+..+-..+.+.|
T Consensus 100 -----~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 100 -----YTKAMDVYQKALDL--DSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp -----HHHHHHHHHHHHHH--CGGGTHHHHHHHHHHHHHT
T ss_pred -----HHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhc
Confidence 99999999887653 23 3345555555555443
No 128
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.89 E-value=0.00036 Score=59.08 Aligned_cols=183 Identities=10% Similarity=0.012 Sum_probs=81.3
Q ss_pred CCCCHHHHHHHHHHHHhCCCC-CcH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhc--------
Q 043311 67 EPTDPRNLQEIFHKMRTEGLT-NNA-VKMFDALSKDGLTHEALQLFAQIKDKGHMPD-VVAHTAVIEAYASA-------- 135 (257)
Q Consensus 67 ~~~~~~~a~~~~~~m~~~~~~-p~~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~-------- 135 (257)
..+++++|.+.++........ +.. ..+-..|.+.|++++|.+.|+...+. .|+ ..+|..+-.+|...
T Consensus 225 ~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~~~~~~~ 302 (472)
T 4g1t_A 225 EGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRAKVFQVMNLR 302 (472)
T ss_dssp -----CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHhhhHH
Confidence 345555666666555543211 111 13455556666666666666665543 222 23333333322211
Q ss_pred -----------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHH--HHHH
Q 043311 136 -----------GQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAG--TYTA 202 (257)
Q Consensus 136 -----------~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~ 202 (257)
+..+.|...|+...+.+ +.+..+|..+-..+.. .|++++|.+.|+...+....+... .+..
T Consensus 303 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~-----~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~ 376 (472)
T 4g1t_A 303 ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHAL-----ADQYEEAEYYFQKEFSKELTPVAKQLLHLR 376 (472)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHH-----TTCHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHH-----hccHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 12344555555544332 2233445555555555 333777777777766543222111 1111
Q ss_pred HH-HHHHHcCCHHHHHHHHHHHHHCC-----------------------CCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 203 VF-EAFVRAQKVDEARGLLQQMKAKG-----------------------FVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 203 li-~~~~~~~~~~~a~~~~~~m~~~g-----------------------~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
+- -.....|+.++|...|++...-. -+.+..++..+=..+...|+.+.|...|+|
T Consensus 377 ~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~k 455 (472)
T 4g1t_A 377 YGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSER 455 (472)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 11 12234567777777766655421 022345566666667777777777777664
No 129
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.86 E-value=0.0016 Score=54.37 Aligned_cols=187 Identities=6% Similarity=-0.007 Sum_probs=129.2
Q ss_pred cccCCCCHHHHHHHHHHHHhCCCCCc-------------------HHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHH
Q 043311 64 VDEEPTDPRNLQEIFHKMRTEGLTNN-------------------AVKMFDALSKDGLTHEALQLFAQIKDK-GHMPDVV 123 (257)
Q Consensus 64 ~~~~~~~~~~a~~~~~~m~~~~~~p~-------------------~~~ll~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~ 123 (257)
.+.+.|++++|.+.|....+..-... ...+...|.+.|++++|.+++....+. +..++..
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 45567999999999999987433211 124788999999999999999877543 1112221
Q ss_pred ---HHHHHHH-HHHhcCChHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhC---
Q 043311 124 ---AHTAVIE-AYASAGQGKEALRVFMRMLA----SGVAP-NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK--- 191 (257)
Q Consensus 124 ---~~~~li~-~~~~~~~~~~a~~~~~~m~~----~g~~~-~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~--- 191 (257)
.....+. .+...|+.+.+..+++.... .+..+ -..++..+...+.. .|.+++|..++++....
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-----~g~~~~A~~~l~~~~~~~~~ 167 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQ-----KKQYKDSLALINDLLREFKK 167 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH-----ccChHHHHHHHHHHHHHHHh
Confidence 2222333 33446789999999987653 23333 35678888889988 44499999999987631
Q ss_pred -CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHhhcCCchhhHHhhh
Q 043311 192 -GMRP-NAGTYTAVFEAFVRAQKVDEARGLLQQMKAK--GFVPD----EKAVKEALIDKRGQGFRGVINILF 255 (257)
Q Consensus 192 -g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~----~~t~~~ll~~~~~~g~~~~~~~l~ 255 (257)
+-.+ ....|..++..|...|++++|..++++.... .+..+ ...+..+...+...|+++.|...|
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~ 239 (434)
T 4b4t_Q 168 LDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYF 239 (434)
T ss_dssp SSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 1122 2357888999999999999999999987643 22222 345556666788899998888766
No 130
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.86 E-value=0.0005 Score=47.46 Aligned_cols=96 Identities=11% Similarity=0.047 Sum_probs=77.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~ 172 (257)
.=..|.+.|++++|.+.|++..+.. +.+...|..+-.+|.+.|++++|...|++..+.+ +.+...|..+-..+...|+
T Consensus 19 ~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~ 96 (126)
T 4gco_A 19 KGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVAMRE 96 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHCCC
Confidence 4567889999999999999887642 2367888889999999999999999999988763 4467888888889998555
Q ss_pred CcchhHHHHHHHHHHHHhCCCCCCH
Q 043311 173 GNAKILGDAQKYLMEMVGKGMRPNA 197 (257)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~~g~~p~~ 197 (257)
+++|.+.|+...+. .|+.
T Consensus 97 -----~~~A~~~~~~al~l--~P~~ 114 (126)
T 4gco_A 97 -----WSKAQRAYEDALQV--DPSN 114 (126)
T ss_dssp -----HHHHHHHHHHHHHH--CTTC
T ss_pred -----HHHHHHHHHHHHHH--CcCC
Confidence 99999999988763 4543
No 131
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.85 E-value=0.0004 Score=47.20 Aligned_cols=108 Identities=11% Similarity=0.110 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCC--CCCC----
Q 043311 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG--MRPN---- 196 (257)
Q Consensus 123 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g--~~p~---- 196 (257)
..|..+-..+...|++++|...|++..+.. +.+...|..+...+...|+ +++|...++...... ..++
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~-----~~~A~~~~~~~~~~~~~~~~~~~~~ 78 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGD-----YNKCRELCEKAIEVGRENREDYRQI 78 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhcc-----HHHHHHHHHHHHhhccccchhHHHH
Confidence 345555566666666666666666665542 3355566666666666333 666666666655321 1112
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043311 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEA 238 (257)
Q Consensus 197 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~l 238 (257)
...|..+-..+...|++++|.+.|++..+. .|+......+
T Consensus 79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l 118 (131)
T 1elr_A 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKC 118 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 445666666677777777777777777664 3454444433
No 132
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.82 E-value=0.00059 Score=48.90 Aligned_cols=100 Identities=11% Similarity=-0.051 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCC-CHHHHH
Q 043311 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP-NAGTYT 201 (257)
Q Consensus 123 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~ 201 (257)
..+..+=..+.+.|++++|...|++..+.. +-+...|..+-..+...| ++++|...|+..... .| +...|.
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g-----~~~~Ai~~~~~al~l--~P~~~~~~~ 108 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKE-----QFQQAADLYAVAFAL--GKNDYTPVF 108 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHH--SSSCCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHc-----cHHHHHHHHHHHHhh--CCCCcHHHH
Confidence 455566666777777777777777777653 335667777777777733 377777777776653 23 345666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 043311 202 AVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232 (257)
Q Consensus 202 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 232 (257)
.+-.+|.+.|++++|...|++..+. .|+.
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l--~~~~ 137 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQH--SNDE 137 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCH
Confidence 6777777777777777777777764 3554
No 133
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.80 E-value=0.00046 Score=45.53 Aligned_cols=97 Identities=14% Similarity=0.017 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCC--CHHHH
Q 043311 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP--NAGTY 200 (257)
Q Consensus 123 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~ 200 (257)
..|..+-..+...|++++|...|++..+.. +.+...|..+-..+...| ++++|.+.|+...+.. +. +...+
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~-----~~~~A~~~~~~a~~~~-~~~~~~~~~ 79 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLE-----RYEEAVDCYNYVINVI-EDEYNKDVW 79 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTS-CCTTCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcc-----CHHHHHHHHHHHHHhC-cccchHHHH
Confidence 344455555556666666666666555432 224455555555555533 3666666666555431 11 34555
Q ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHC
Q 043311 201 TAVFEAFVRA-QKVDEARGLLQQMKAK 226 (257)
Q Consensus 201 ~~li~~~~~~-~~~~~a~~~~~~m~~~ 226 (257)
..+...+.+. |++++|.+.+++....
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 80 AAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 5555666666 6666666666665543
No 134
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.79 E-value=0.0014 Score=45.19 Aligned_cols=98 Identities=11% Similarity=-0.048 Sum_probs=64.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHH
Q 043311 121 DVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTY 200 (257)
Q Consensus 121 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 200 (257)
+...|..+-..+...|++++|...|++..+.. +.+...|..+-..+...|+ ++.|...++...... +-+...|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~-----~~~A~~~~~~al~~~-p~~~~~~ 80 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQ-----PEQALADCRRALELD-GQSVKAH 80 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHC-TTCHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcC-----HHHHHHHHHHHHHhC-chhHHHH
Confidence 45666666777777777777777777766543 3356666777777777443 777777777666532 2245566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 043311 201 TAVFEAFVRAQKVDEARGLLQQMKA 225 (257)
Q Consensus 201 ~~li~~~~~~~~~~~a~~~~~~m~~ 225 (257)
..+-..+...|++++|...|++..+
T Consensus 81 ~~l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 81 FFLGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 6677777777777777777777654
No 135
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.78 E-value=0.003 Score=43.84 Aligned_cols=96 Identities=15% Similarity=0.033 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCH
Q 043311 122 VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN----AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA 197 (257)
Q Consensus 122 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~----~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 197 (257)
...+..+-..+...|++++|...|++..+. .|+ ...|..+-..+...++ +++|...++...+.. +.+.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~-----~~~A~~~~~~~~~~~-~~~~ 99 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLED-----YDKAETEASKAIEKD-GGDV 99 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHT-SCCH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHcc-----HHHHHHHHHHHHhhC-ccCH
Confidence 344444555555555555555555555442 233 3444445555555222 555555555544321 1133
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043311 198 GTYTAVFEAFVRAQKVDEARGLLQQMKA 225 (257)
Q Consensus 198 ~~~~~li~~~~~~~~~~~a~~~~~~m~~ 225 (257)
..+..+-..+...|++++|...|++...
T Consensus 100 ~~~~~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 100 KALYRRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455555555555666666666655554
No 136
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.77 E-value=0.0017 Score=44.29 Aligned_cols=95 Identities=14% Similarity=0.125 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 043311 124 AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAV 203 (257)
Q Consensus 124 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 203 (257)
.|..+=..+.+.|++++|...|++..+.. +.+...|..+-..+.+.|+ +++|...|+...+.. +-+...|..+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~-----~~~A~~~~~~al~~~-p~~~~~~~~l 78 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMS-----FPEAIADCNKAIEKD-PNFVRAYIRK 78 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcC-----HHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 34444445555666666666665555432 2245555555555555333 666666665555421 1134455555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 043311 204 FEAFVRAQKVDEARGLLQQMKA 225 (257)
Q Consensus 204 i~~~~~~~~~~~a~~~~~~m~~ 225 (257)
-.++...|++++|...|++..+
T Consensus 79 g~~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 79 ATAQIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHHHHHHH
Confidence 5566666666666666666554
No 137
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.75 E-value=0.0015 Score=46.45 Aligned_cols=95 Identities=12% Similarity=-0.059 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 043311 124 AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAV 203 (257)
Q Consensus 124 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 203 (257)
.+..+-..+...|++++|...|+.....+ +.+...|..+-..+...| ++++|...|+...... +-+...|..+
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g-----~~~~A~~~~~~al~l~-p~~~~~~~~l 95 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMG-----QYDLAIHSYSYGAVMD-IXEPRFPFHA 95 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHS-TTCTHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHhcC-CCCchHHHHH
Confidence 34444445555555555555555554432 224445555555555522 2555555555544321 1133444445
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 043311 204 FEAFVRAQKVDEARGLLQQMKA 225 (257)
Q Consensus 204 i~~~~~~~~~~~a~~~~~~m~~ 225 (257)
-.+|...|++++|...|++..+
T Consensus 96 g~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555555544
No 138
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.74 E-value=0.0014 Score=54.74 Aligned_cols=160 Identities=9% Similarity=-0.019 Sum_probs=111.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCC
Q 043311 94 FDALSKDGLTHEALQLFAQIKDKGHMPD----------------VVAHTAVIEAYASAGQGKEALRVFMRMLAS-GVAPN 156 (257)
Q Consensus 94 l~~~~~~~~~~~a~~~~~~m~~~g~~p~----------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~~~ 156 (257)
...+.+.|++++|.+.|....+...... ...+..+...|.+.|++++|.+++...... +..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4566889999999999999887532211 124778899999999999999999887643 11222
Q ss_pred HHHH---HHHHHHHHhccCCcchhHHHHHHHHHHHH----hCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--
Q 043311 157 AYTY---AVLIKGLAAAADGNAKILGDAQKYLMEMV----GKGMRPN-AGTYTAVFEAFVRAQKVDEARGLLQQMKAK-- 226 (257)
Q Consensus 157 ~~t~---~~ll~~~~~~~~~~~~~~~~a~~~~~~m~----~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-- 226 (257)
..+- ...+..+.. ..|..+.+.++++... ..+..+. ..++..+...|...|++++|..++++....
T Consensus 91 ~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 166 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQ----VPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFK 166 (434)
T ss_dssp HHHHHHHHHHHHHHCS----CCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 2222 222222221 1345888888877664 2333343 457788899999999999999999998753
Q ss_pred CCC--C-CHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 227 GFV--P-DEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 227 g~~--p-~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
+.. + ....+..+...|...|+.++|..+++|
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 200 (434)
T 4b4t_Q 167 KLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTA 200 (434)
T ss_dssp TSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 221 1 245778888899999999999988753
No 139
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.73 E-value=0.00087 Score=54.64 Aligned_cols=126 Identities=11% Similarity=-0.028 Sum_probs=101.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHhccCCcchhHHHHHHHHH
Q 043311 121 DVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN--------------AYTYAVLIKGLAAAADGNAKILGDAQKYLM 186 (257)
Q Consensus 121 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~--------------~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~ 186 (257)
+...|..+=..|.+.|++++|...|++..+..-... ...|..+-..+.+.|+ +++|...++
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~-----~~~A~~~~~ 220 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQA-----FSAAIESCN 220 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCC-----HHHHHHHHH
Confidence 356788888899999999999999999887532211 5889999999999555 999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHh
Q 043311 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINI 253 (257)
Q Consensus 187 ~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~ 253 (257)
...+.. +.+...|..+-.+|...|++++|...|++..+.. +-+...+..+-..+...|+.+.+++
T Consensus 221 ~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~ 285 (336)
T 1p5q_A 221 KALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREK 285 (336)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 988642 2367788889999999999999999999998753 2356778888888888888887743
No 140
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.72 E-value=0.0014 Score=47.11 Aligned_cols=91 Identities=14% Similarity=0.051 Sum_probs=58.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~ 172 (257)
+-..+.+.|++++|.+.|+...+.. +-+...|..+-.+|.+.|++++|...|++..+.. +-+...|..+-..+...|+
T Consensus 17 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~ 94 (164)
T 3sz7_A 17 EGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLARFDMAD 94 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccC
Confidence 4556667777777777777766542 1255666677777777777777777777766543 2346666666666666433
Q ss_pred CcchhHHHHHHHHHHHHh
Q 043311 173 GNAKILGDAQKYLMEMVG 190 (257)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~ 190 (257)
+++|...|+...+
T Consensus 95 -----~~~A~~~~~~al~ 107 (164)
T 3sz7_A 95 -----YKGAKEAYEKGIE 107 (164)
T ss_dssp -----HHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHH
Confidence 7777777776654
No 141
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.72 E-value=0.0013 Score=46.20 Aligned_cols=89 Identities=11% Similarity=-0.061 Sum_probs=38.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043311 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFV 208 (257)
Q Consensus 129 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 208 (257)
-..+.+.|++++|...|++....+ +.+...|..+-..+...|+ +++|...|+...... +-+...|..+-.+|.
T Consensus 25 a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~-----~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 25 GFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGL-----YEQALQSYSYGALMD-INEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhh-----HHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 334444445555555554444331 2234444444444444222 455555444444321 112233444444444
Q ss_pred HcCCHHHHHHHHHHHH
Q 043311 209 RAQKVDEARGLLQQMK 224 (257)
Q Consensus 209 ~~~~~~~a~~~~~~m~ 224 (257)
..|++++|...|++..
T Consensus 98 ~~g~~~~A~~~~~~al 113 (142)
T 2xcb_A 98 QLGDLDGAESGFYSAR 113 (142)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 5555555555554444
No 142
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.69 E-value=0.0012 Score=49.03 Aligned_cols=127 Identities=13% Similarity=0.051 Sum_probs=85.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCC-CCC--------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGH-MPD--------------VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA 157 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~-~p~--------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 157 (257)
+-..+.+.|++++|.+.|+...+... .|+ ...|..+-.+|.+.|++++|...+++..+.. +.+.
T Consensus 44 ~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~ 122 (198)
T 2fbn_A 44 EGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNV 122 (198)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccH
Confidence 55677889999999999998876421 111 2678888888899999999999999888753 4467
Q ss_pred HHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHCC
Q 043311 158 YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQKVDEAR-GLLQQMKAKG 227 (257)
Q Consensus 158 ~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~-~~~~~m~~~g 227 (257)
..|..+-.++...|+ ++.|...|+...+. .| +...+..+-..+...++..++. ..+..|...|
T Consensus 123 ~~~~~lg~~~~~~~~-----~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 123 KALYKLGVANMYFGF-----LEEAKENLYKAASL--NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHHHHHHHHHTC-----HHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHccc-----HHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 788888888888444 99999999887753 33 4556777777777777666666 4555555443
No 143
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.67 E-value=0.0011 Score=59.21 Aligned_cols=183 Identities=10% Similarity=0.042 Sum_probs=119.4
Q ss_pred ccCCCCHHHHH-HHHHHHHhCCCCCcHH----HHHHHHHhcCChHHHHHHHHHHHhCCC---------CCC---------
Q 043311 65 DEEPTDPRNLQ-EIFHKMRTEGLTNNAV----KMFDALSKDGLTHEALQLFAQIKDKGH---------MPD--------- 121 (257)
Q Consensus 65 ~~~~~~~~~a~-~~~~~m~~~~~~p~~~----~ll~~~~~~~~~~~a~~~~~~m~~~g~---------~p~--------- 121 (257)
+.+.|+.+.|. ++|+..... .|... ..+...-+.|+++.|.++|+.+.+... .|+
T Consensus 353 ~~~~~~~~~a~r~il~rAi~~--~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~ 430 (679)
T 4e6h_A 353 QGEKNTDSTVITKYLKLGQQC--IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLK 430 (679)
T ss_dssp HHHHSCCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhc
Confidence 34556777775 888777652 23322 345556678888888888888775310 131
Q ss_pred ---HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCC
Q 043311 122 ---VVAHTAVIEAYASAGQGKEALRVFMRMLAS-G-VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN 196 (257)
Q Consensus 122 ---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g-~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~ 196 (257)
..+|-..+....+.|+++.|..+|....+. + ..+......+.+.- +. .+..+.|.++|+...+. ++-+
T Consensus 431 ~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~--~~----~~d~e~Ar~ife~~Lk~-~p~~ 503 (679)
T 4e6h_A 431 SKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEY--HI----SKDTKTACKVLELGLKY-FATD 503 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHH--TT----TSCCHHHHHHHHHHHHH-HTTC
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH--Hh----CCCHHHHHHHHHHHHHH-CCCc
Confidence 236777788778888888899998888765 2 22333333333331 21 12278888888877654 3335
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 197 AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP--DEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 197 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
...|...++-....|+.+.|..+|++.....-.+ ....|...+.--...|+.+.+.++.+
T Consensus 504 ~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~ 565 (679)
T 4e6h_A 504 GEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEK 565 (679)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5667777787778888999999999887654222 34567777777777888888877764
No 144
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.67 E-value=0.0043 Score=52.68 Aligned_cols=175 Identities=13% Similarity=0.089 Sum_probs=109.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCcHHHHHHHHHhcCC---------------------------------------hHHHHHH
Q 043311 69 TDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGL---------------------------------------THEALQL 109 (257)
Q Consensus 69 ~~~~~a~~~~~~m~~~~~~p~~~~ll~~~~~~~~---------------------------------------~~~a~~~ 109 (257)
+++++|.+.|+...+.|...-...|-..|...+. .+.+..+
T Consensus 88 ~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~ 167 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERI 167 (452)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHH
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHH
Confidence 3788899999888887765544444444433322 1222222
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHH
Q 043311 110 FAQIKDKGHMPDVVAHTAVIEAYASAG---QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLM 186 (257)
Q Consensus 110 ~~~m~~~g~~p~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~ 186 (257)
+.... ..+...+..|-..|.+.| +.++|+..|++-.+.| .++...+..+-..|.. |.+..+..++|..+|+
T Consensus 168 ~~~a~----~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~-g~~~~~d~~~A~~~~~ 241 (452)
T 3e4b_A 168 CKAAL----NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGD-ATLGTPDEKTAQALLE 241 (452)
T ss_dssp HHHHT----TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTC-GGGSSCCHHHHHHHHH
T ss_pred HHHHH----cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhC-CCCCCCCHHHHHHHHH
Confidence 22222 223447777777888888 8899999998888876 4455554555555533 2222345888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC-----chhhHHhhhcC
Q 043311 187 EMVGKGMRPNAGTYTAVFEA-F--VRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG-----FRGVINILFGK 257 (257)
Q Consensus 187 ~m~~~g~~p~~~~~~~li~~-~--~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g-----~~~~~~~l~~k 257 (257)
... .| +...+..|-.. + ...+++++|.+.|++..+.| +...+..+-..|. .| +.++|...|+|
T Consensus 242 ~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~ 312 (452)
T 3e4b_A 242 KIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEK 312 (452)
T ss_dssp HHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHT
T ss_pred HHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHH
Confidence 876 32 34444444444 3 45788999999999988877 4555555555554 44 78888877764
No 145
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.66 E-value=0.0017 Score=42.69 Aligned_cols=92 Identities=12% Similarity=-0.035 Sum_probs=55.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP--NAYTYAVLIKGLAAA 170 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~--~~~t~~~ll~~~~~~ 170 (257)
+-..+.+.|++++|...|+...+.. ..+...|..+-..+...|++++|...|++..+.. +. +...|..+...+...
T Consensus 12 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~~~~ 89 (112)
T 2kck_A 12 EGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADALRYI 89 (112)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHHHHH
Confidence 4455566666666766666665532 2245566666666667777777777776666542 22 456666666666663
Q ss_pred -cCCcchhHHHHHHHHHHHHhC
Q 043311 171 -ADGNAKILGDAQKYLMEMVGK 191 (257)
Q Consensus 171 -~~~~~~~~~~a~~~~~~m~~~ 191 (257)
|+ +++|.+.++.....
T Consensus 90 ~~~-----~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 90 EGK-----EVEAEIAEARAKLE 106 (112)
T ss_dssp SSC-----SHHHHHHHHHHGGG
T ss_pred hCC-----HHHHHHHHHHHhhc
Confidence 33 66777776666543
No 146
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.65 E-value=0.0014 Score=58.56 Aligned_cols=177 Identities=11% Similarity=0.063 Sum_probs=121.0
Q ss_pred HHHHHHHHHHh-CCCCCcHH-HHHHHHHhcCChHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043311 73 NLQEIFHKMRT-EGLTNNAV-KMFDALSKDGLTHEAL-QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRML 149 (257)
Q Consensus 73 ~a~~~~~~m~~-~~~~p~~~-~ll~~~~~~~~~~~a~-~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 149 (257)
.+..+|++... .+..|+.. .....+.+.|+.++|. ++|+..... .+.+...|-..+...-+.|+++.|.++|+.+.
T Consensus 327 Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 327 RMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34455665554 22333322 2444556678888896 999988764 34466778888999999999999999999988
Q ss_pred HCC---------CCCC------------HHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 043311 150 ASG---------VAPN------------AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK-GMRPNAGTYTAVFEAF 207 (257)
Q Consensus 150 ~~g---------~~~~------------~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~ 207 (257)
+.. -.|+ ...|...++...+. |..+.|..+|....+. +. ++...|......-
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~-----~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE 479 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRI-----QGLAASRKIFGKCRRLKKL-VTPDIYLENAYIE 479 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH-----HCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHH
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHH
Confidence 641 0132 34688888877774 4499999999998765 21 1233333222222
Q ss_pred HHc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 208 VRA-QKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 208 ~~~-~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
.+. ++.+.|.++|++..+. +.-+..-+...+.-....|+.+.|..+|++
T Consensus 480 ~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lfer 529 (679)
T 4e6h_A 480 YHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFES 529 (679)
T ss_dssp HTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 333 4589999999999986 334555666777777788999999999864
No 147
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.64 E-value=0.0048 Score=40.72 Aligned_cols=92 Identities=15% Similarity=0.069 Sum_probs=73.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~ 172 (257)
+...+...|++++|...|+...+.. +.+...|..+-..+...|++++|...+++..+.. +.+...|..+...+...|+
T Consensus 10 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~ 87 (118)
T 1elw_A 10 KGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNR 87 (118)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhh
Confidence 5667788999999999999887652 2367788888888999999999999999888753 3367788888888888444
Q ss_pred CcchhHHHHHHHHHHHHhC
Q 043311 173 GNAKILGDAQKYLMEMVGK 191 (257)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~~ 191 (257)
+++|.+.++...+.
T Consensus 88 -----~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 88 -----FEEAKRTYEEGLKH 101 (118)
T ss_dssp -----HHHHHHHHHHHHTT
T ss_pred -----HHHHHHHHHHHHHc
Confidence 99999999888764
No 148
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.63 E-value=0.0012 Score=55.75 Aligned_cols=154 Identities=14% Similarity=0.004 Sum_probs=98.6
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC-------
Q 043311 100 DGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD------- 172 (257)
Q Consensus 100 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~------- 172 (257)
.+++++|.++|+...+.. +.+..++..+-..|...|++++|...|++..+.. +-+..+|..+-..|...+.
T Consensus 226 ~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~ 303 (472)
T 4g1t_A 226 GEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRE 303 (472)
T ss_dssp ----CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred hhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHH
Confidence 356677888887766542 3456778888889999999999999999988753 3355566655444432111
Q ss_pred -------CcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHH-Hh
Q 043311 173 -------GNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK--AVKEALI-DK 242 (257)
Q Consensus 173 -------~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--t~~~ll~-~~ 242 (257)
...+..+.|...|+...+.. +.+...+..+-..|...|++++|...|++..+....+... .+..+-. ..
T Consensus 304 ~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~ 382 (472)
T 4g1t_A 304 NGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQL 382 (472)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 00123567777777765431 2245678888899999999999999999998865433321 1222211 23
Q ss_pred hcCCchhhHHhhhc
Q 043311 243 RGQGFRGVINILFG 256 (257)
Q Consensus 243 ~~~g~~~~~~~l~~ 256 (257)
...|+.+.|...|.
T Consensus 383 ~~~~~~~~Ai~~y~ 396 (472)
T 4g1t_A 383 YQMKCEDKAIHHFI 396 (472)
T ss_dssp HTSSCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHH
Confidence 46788888877664
No 149
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.61 E-value=0.0029 Score=45.18 Aligned_cols=97 Identities=11% Similarity=-0.008 Sum_probs=80.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~ 172 (257)
+-..+.+.|++++|...|+...+.. +-+...|..+=.+|...|++++|...|++..+.. +-+...|..+-.++...|+
T Consensus 42 lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~lg~ 119 (151)
T 3gyz_A 42 YAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLRLKA 119 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 5667889999999999999998752 2357889999999999999999999999998763 3356888888899999544
Q ss_pred CcchhHHHHHHHHHHHHhCCCCCCHH
Q 043311 173 GNAKILGDAQKYLMEMVGKGMRPNAG 198 (257)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~~g~~p~~~ 198 (257)
+++|...|+...+. .|+..
T Consensus 120 -----~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 120 -----PLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp -----HHHHHHHHHHHHHH--CCCHH
T ss_pred -----HHHHHHHHHHHHHh--CCCHH
Confidence 99999999998864 45653
No 150
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.60 E-value=0.0034 Score=42.72 Aligned_cols=91 Identities=11% Similarity=-0.009 Sum_probs=72.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~ 172 (257)
.-..+.+.|++++|...|+...+.. +.+...|..+-.+|.+.|++++|...|++..+.+ +-+...|..+-..+...|+
T Consensus 10 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~ 87 (126)
T 3upv_A 10 EGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKE 87 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhC
Confidence 4456788999999999999887752 2357888888899999999999999999988763 3367788888888888544
Q ss_pred CcchhHHHHHHHHHHHHh
Q 043311 173 GNAKILGDAQKYLMEMVG 190 (257)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~ 190 (257)
+++|...|+...+
T Consensus 88 -----~~~A~~~~~~al~ 100 (126)
T 3upv_A 88 -----YASALETLDAART 100 (126)
T ss_dssp -----HHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHH
Confidence 9999999888765
No 151
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.59 E-value=0.00065 Score=47.85 Aligned_cols=128 Identities=15% Similarity=0.046 Sum_probs=90.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHH
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHM-PD----VVAHTAVIEAYASAGQGKEALRVFMRMLAS----GVAP-NAYTYAV 162 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~~-~~~t~~~ 162 (257)
+-..+...|++++|...|.+..+.... ++ ..++..+-..+...|++++|...|++..+. +-.+ ....+..
T Consensus 15 l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 94 (164)
T 3ro3_A 15 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYS 94 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 556777889999999998877653111 11 247888888899999999999999887643 1111 1456667
Q ss_pred HHHHHHhccCCcchhHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043311 163 LIKGLAAAADGNAKILGDAQKYLMEMVG----KGMRP-NAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225 (257)
Q Consensus 163 ll~~~~~~~~~~~~~~~~a~~~~~~m~~----~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 225 (257)
+-..+...|+ +++|.+.+++..+ .+..+ ....+..+-..+...|++++|.+.+++..+
T Consensus 95 l~~~~~~~~~-----~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 95 LGNTYTLLQD-----YEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHTTC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhh-----HHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 7777777444 8999988887653 22111 134577788888999999999999988764
No 152
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.57 E-value=0.0045 Score=45.89 Aligned_cols=151 Identities=7% Similarity=-0.056 Sum_probs=97.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-C---C-----------HH
Q 043311 94 FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVA-P---N-----------AY 158 (257)
Q Consensus 94 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-~---~-----------~~ 158 (257)
.......|+++.+.+.|+.-.+. ..-....+..+-..+.+.|++++|...|++..+..-. | . ..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEE-KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp -----------CCCSGGGCCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 33344455555555555422111 0012455667777889999999999999998875211 1 1 27
Q ss_pred HHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043311 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEA 238 (257)
Q Consensus 159 t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~l 238 (257)
.|..+-..+...|+ +++|...++...... +.+...|..+-.+|...|++++|.+.|++..+.. +-+...+..+
T Consensus 90 ~~~~la~~~~~~~~-----~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 162 (198)
T 2fbn_A 90 CNLNLATCYNKNKD-----YPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSY 162 (198)
T ss_dssp HHHHHHHHHHHTTC-----HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHHHHHHHHHHhcC-----HHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHH
Confidence 88888888888544 999999999887642 3356788888899999999999999999998753 2245566666
Q ss_pred HHHhhcCCchhhHH
Q 043311 239 LIDKRGQGFRGVIN 252 (257)
Q Consensus 239 l~~~~~~g~~~~~~ 252 (257)
-..+...|....++
T Consensus 163 ~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 163 ELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666655554
No 153
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.57 E-value=0.0011 Score=44.94 Aligned_cols=105 Identities=12% Similarity=0.130 Sum_probs=79.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCC----HHHHHHHHHH
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGV--APN----AYTYAVLIKG 166 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~~~----~~t~~~ll~~ 166 (257)
+-..+...|+++.|...|+...+.. +.+...|..+-..|...|++++|...|++..+... .++ ..+|..+...
T Consensus 10 l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 88 (131)
T 1elr_A 10 LGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNS 88 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHH
Confidence 5667788999999999999887753 34677888888899999999999999998876521 222 6778888888
Q ss_pred HHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043311 167 LAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFE 205 (257)
Q Consensus 167 ~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 205 (257)
+...|+ ++.|.+.|+...+. .|+......+-.
T Consensus 89 ~~~~~~-----~~~A~~~~~~~~~~--~~~~~~~~~l~~ 120 (131)
T 1elr_A 89 YFKEEK-----YKDAIHFYNKSLAE--HRTPDVLKKCQQ 120 (131)
T ss_dssp HHHTTC-----HHHHHHHHHHHHHH--CCCHHHHHHHHH
T ss_pred HHHhcc-----HHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 888544 99999999988764 356554444433
No 154
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.56 E-value=0.002 Score=44.39 Aligned_cols=106 Identities=13% Similarity=0.098 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhC--CCCCC----H
Q 043311 124 AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK--GMRPN----A 197 (257)
Q Consensus 124 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~--g~~p~----~ 197 (257)
.+..+=..+.+.|++++|...|++..+.. +-+...|..+-..|...|+ +++|.+.++...+. ...++ .
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~-----~~~A~~~~~~al~~~~~~~~~~~~~a 83 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKK-----FAECVQFCEKAVEVGRETRADYKLIA 83 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhh-----HHHHHHHHHHHHHhCcccchhhHHHH
Confidence 34444555666666666666666665542 2345566666666666333 66666666655431 01111 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 043311 198 GTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKE 237 (257)
Q Consensus 198 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ 237 (257)
.+|..+=..+...|++++|.+.|++.... .||..+...
T Consensus 84 ~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~ 121 (127)
T 4gcn_A 84 KAMSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKK 121 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHH
Confidence 24555556677778888888888887653 466555443
No 155
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.55 E-value=0.0083 Score=50.93 Aligned_cols=154 Identities=12% Similarity=0.032 Sum_probs=104.2
Q ss_pred ccccCCC---CHHHHHHHHHHHHhCCCCCcH--HHHHHHHHhc----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H
Q 043311 63 VVDEEPT---DPRNLQEIFHKMRTEGLTNNA--VKMFDALSKD----GLTHEALQLFAQIKDKGHMPDVVAHTAVIEA-Y 132 (257)
Q Consensus 63 ~~~~~~~---~~~~a~~~~~~m~~~~~~p~~--~~ll~~~~~~----~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-~ 132 (257)
.++...| ++++|.+.|+...+.|..... ..+-..|... +++++|.+.|+... . -+...+..|=.. |
T Consensus 184 ~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~ 259 (452)
T 3e4b_A 184 TVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLY 259 (452)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHH
T ss_pred HHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHH
Confidence 5556677 888889988888888765555 3455555443 58888999888877 3 244555555444 3
Q ss_pred --HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-
Q 043311 133 --ASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVR- 209 (257)
Q Consensus 133 --~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~- 209 (257)
...++.++|..+|++-.+.| +...+..+-..|. .|.+...++++|.+.|+... . -+...+..|-..|..
T Consensus 260 ~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G 331 (452)
T 3e4b_A 260 DFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRG 331 (452)
T ss_dssp HSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTT
T ss_pred hCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCC
Confidence 45788999999999888776 5666666666665 34222335888888887765 3 245555555555554
Q ss_pred ---cCCHHHHHHHHHHHHHCCC
Q 043311 210 ---AQKVDEARGLLQQMKAKGF 228 (257)
Q Consensus 210 ---~~~~~~a~~~~~~m~~~g~ 228 (257)
..+.++|...|++..+.|.
T Consensus 332 ~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 332 YLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp TTSSCCHHHHHHHHHHHHTTTC
T ss_pred CCCCcCHHHHHHHHHHHHhhCh
Confidence 3388888888888887764
No 156
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=97.46 E-value=0.0063 Score=48.93 Aligned_cols=211 Identities=6% Similarity=-0.020 Sum_probs=146.1
Q ss_pred cchhhcccCCCCCCcccccc---ccccCCC--CHHHHHHHHHHHHhCCCCCcH-H----HHHHHH-Hhc---CChHHHHH
Q 043311 43 TKKYVNTKSKLPPPYDPFKK---VVDEEPT--DPRNLQEIFHKMRTEGLTNNA-V----KMFDAL-SKD---GLTHEALQ 108 (257)
Q Consensus 43 ~~~~~~~~~~~~p~~~~~~~---~~~~~~~--~~~~a~~~~~~m~~~~~~p~~-~----~ll~~~-~~~---~~~~~a~~ 108 (257)
+.....+.-.+.|+..+.=. .++...| ++++++++++.+......... . -++..+ .+. ++++++++
T Consensus 52 aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~ 131 (306)
T 3dra_A 52 ALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFD 131 (306)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHH
T ss_pred HHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHH
Confidence 33445555566677655433 5556667 999999999999985433332 2 144222 333 78999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC-CcchhHHHHHHHH
Q 043311 109 LFAQIKDKGHMPDVVAHTAVIEAYASAGQGK--EALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD-GNAKILGDAQKYL 185 (257)
Q Consensus 109 ~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~-~~~~~~~~a~~~~ 185 (257)
+++.+.+.. +-+-.+|+----.+.+.|+++ ++++.++++.+.+.. |...|+---..+...+. .....++++.+.+
T Consensus 132 ~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~ 209 (306)
T 3dra_A 132 ILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEELNYV 209 (306)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHHHHHH
Confidence 999998752 346778888888888888888 999999999987644 88888876666655332 1122378888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHCC--CCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 186 MEMVGKGMRPNAGTYTAVFEAFVRAQKVD-EARGLLQQMKAKG--FVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 186 ~~m~~~g~~p~~~~~~~li~~~~~~~~~~-~a~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
+...... +-|...|+-+-..+.+.|+.. .+..+..++.+.+ -..+...+..+...+...|+.++|.++++
T Consensus 210 ~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 210 KDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 8777542 237778888877787877643 3555666655432 13477888888888888999999888875
No 157
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.45 E-value=0.0033 Score=43.98 Aligned_cols=91 Identities=12% Similarity=-0.037 Sum_probs=71.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~ 172 (257)
+-..+.+.|++++|...|+...+.. +.+...|..+-.+|...|++++|...|++..+.+ +-+...|..+-..+...|+
T Consensus 24 ~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~ 101 (142)
T 2xcb_A 24 LGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQLGD 101 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 5567788899999999999887642 2356778888888899999999999999888763 3456777778888888444
Q ss_pred CcchhHHHHHHHHHHHHh
Q 043311 173 GNAKILGDAQKYLMEMVG 190 (257)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~ 190 (257)
+++|.+.|+...+
T Consensus 102 -----~~~A~~~~~~al~ 114 (142)
T 2xcb_A 102 -----LDGAESGFYSARA 114 (142)
T ss_dssp -----HHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHH
Confidence 9999999888764
No 158
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.45 E-value=0.0076 Score=41.73 Aligned_cols=90 Identities=16% Similarity=0.008 Sum_probs=55.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPD----VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLA 168 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~ 168 (257)
+-..+.+.|++++|.+.|+...+. .|+ ...|..+-.+|...|++++|...|++..+.. +.+...|..+-..+.
T Consensus 34 ~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 110 (148)
T 2dba_A 34 EGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRRSQALE 110 (148)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHHHHHHH
Confidence 445556667777777777766653 344 4566666666777777777777776666542 224556666666666
Q ss_pred hccCCcchhHHHHHHHHHHHHh
Q 043311 169 AAADGNAKILGDAQKYLMEMVG 190 (257)
Q Consensus 169 ~~~~~~~~~~~~a~~~~~~m~~ 190 (257)
..|+ +++|...|+....
T Consensus 111 ~~~~-----~~~A~~~~~~al~ 127 (148)
T 2dba_A 111 KLGR-----LDQAVLDLQRCVS 127 (148)
T ss_dssp HHTC-----HHHHHHHHHHHHH
T ss_pred HcCC-----HHHHHHHHHHHHH
Confidence 6333 7777777766654
No 159
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.45 E-value=0.0012 Score=52.39 Aligned_cols=121 Identities=13% Similarity=-0.017 Sum_probs=53.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCC--HHHHHHHHH
Q 043311 128 VIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN--AGTYTAVFE 205 (257)
Q Consensus 128 li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~ 205 (257)
....+...|++++|.++|+.+...+ |+....-.+-..+.+ .++|++|...|+...... .|. ...+..+=.
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~-----~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~ 179 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGA-----AERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGV 179 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHH-----TTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHH-----cCCHHHHHHHHHHhhccC-CcccHHHHHHHHHH
Confidence 3444555556666665555554432 222222222223444 233555555554332210 000 113333444
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 206 AFVRAQKVDEARGLLQQMKAKGFVPD--EKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 206 ~~~~~~~~~~a~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
++...|++++|+..|++.......|. .......-.++.+.|..++|..+|+
T Consensus 180 al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~ 232 (282)
T 4f3v_A 180 AAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLE 232 (282)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555666666666655553322232 2233334444555555555555553
No 160
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.44 E-value=0.0038 Score=44.75 Aligned_cols=86 Identities=9% Similarity=-0.052 Sum_probs=38.3
Q ss_pred cccCCCCHHHHHHHHHHHHhCCC-CCcHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 043311 64 VDEEPTDPRNLQEIFHKMRTEGL-TNNAV-KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEA 141 (257)
Q Consensus 64 ~~~~~~~~~~a~~~~~~m~~~~~-~p~~~-~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 141 (257)
.+...|++++|.+.|+...+..- .+... .+-.+|.+.|++++|...|+...+.. +-+...|..+-.+|...|++++|
T Consensus 20 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A 98 (164)
T 3sz7_A 20 AAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLARFDMADYKGA 98 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHH
Confidence 33444555555555554444221 11111 23444445555555555555444431 11244444455555555555555
Q ss_pred HHHHHHHHH
Q 043311 142 LRVFMRMLA 150 (257)
Q Consensus 142 ~~~~~~m~~ 150 (257)
...|++..+
T Consensus 99 ~~~~~~al~ 107 (164)
T 3sz7_A 99 KEAYEKGIE 107 (164)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555554443
No 161
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.42 E-value=0.0025 Score=50.45 Aligned_cols=133 Identities=11% Similarity=0.023 Sum_probs=93.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhc
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN--AYTYAVLIKGLAAA 170 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~t~~~ll~~~~~~ 170 (257)
+...+...|++++|.++|+.+...+ |+......+-..+.+.+++++|+..|+...+.. .|. ...+..+=.++..
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~- 183 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAAN- 183 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHH-
Confidence 4567888999999999999887643 544355555568899999999999997544321 111 2355666667777
Q ss_pred cCCcchhHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 043311 171 ADGNAKILGDAQKYLMEMVGKGMRPN--AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAV 235 (257)
Q Consensus 171 ~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~ 235 (257)
.|++++|...|++.......|. .......-.++.+.|+.++|..+|+++... .|+....
T Consensus 184 ----LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~ 244 (282)
T 4f3v_A 184 ----LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVA 244 (282)
T ss_dssp ----TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred ----CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHH
Confidence 4449999999998875433254 234555666778899999999999999885 4663333
No 162
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.42 E-value=0.0036 Score=44.36 Aligned_cols=91 Identities=12% Similarity=0.000 Sum_probs=72.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~ 172 (257)
+-..+.+.|++++|...|+...+.. +.+...|..+=.+|...|++++|...|++..+.+ +-+...|..+-..+...|+
T Consensus 27 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~ 104 (148)
T 2vgx_A 27 LAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLLQXGE 104 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCC
Confidence 5667788999999999999887642 2367788888888999999999999999988753 3356778888888888444
Q ss_pred CcchhHHHHHHHHHHHHh
Q 043311 173 GNAKILGDAQKYLMEMVG 190 (257)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~ 190 (257)
+++|...|+...+
T Consensus 105 -----~~~A~~~~~~al~ 117 (148)
T 2vgx_A 105 -----LAEAESGLFLAQE 117 (148)
T ss_dssp -----HHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHH
Confidence 9999999988765
No 163
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.42 E-value=0.00062 Score=47.99 Aligned_cols=131 Identities=12% Similarity=-0.023 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHh----CC
Q 043311 122 VVAHTAVIEAYASAGQGKEALRVFMRMLASGV-APN----AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG----KG 192 (257)
Q Consensus 122 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~~~----~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~----~g 192 (257)
..++..+-..|...|++++|...+++..+... ..+ ..++..+-..+...|+ +++|...++.... .+
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~a~~~~~~~~ 83 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGE-----FETASEYYKKTLLLARQLK 83 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHhC
Confidence 34677778888999999999999988775311 112 1467777777888444 9999999888653 21
Q ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHhhcCCchhhHHhhhcC
Q 043311 193 MRP-NAGTYTAVFEAFVRAQKVDEARGLLQQMKAK----GFVP-DEKAVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 193 ~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
-.+ ....+..+-..+...|++++|.+.+++..+. +-.+ ....+..+-..+...|+.+.|...+++
T Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 154 (164)
T 3ro3_A 84 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 154 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 111 1346777888899999999999999988753 2111 234566777788999999999888753
No 164
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.41 E-value=0.00064 Score=46.01 Aligned_cols=84 Identities=17% Similarity=0.113 Sum_probs=36.4
Q ss_pred CChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCH
Q 043311 136 GQGKEALRVFMRMLASGV--APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKV 213 (257)
Q Consensus 136 ~~~~~a~~~~~~m~~~g~--~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 213 (257)
|++++|...|++..+.+. +-+...|..+-..+...| ++++|...|+...+.. +-+...+..+-.++...|++
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~-----~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 77 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLG-----EYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRY 77 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCH
Confidence 444555555555444321 112334444444444422 2555555555544321 11234444445555555555
Q ss_pred HHHHHHHHHHHH
Q 043311 214 DEARGLLQQMKA 225 (257)
Q Consensus 214 ~~a~~~~~~m~~ 225 (257)
++|...+++...
T Consensus 78 ~~A~~~~~~al~ 89 (117)
T 3k9i_A 78 EQGVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555444
No 165
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.41 E-value=0.0067 Score=41.28 Aligned_cols=91 Identities=13% Similarity=-0.082 Sum_probs=58.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~ 172 (257)
+-..+.+.|++++|...|+...+.. +-+...|..+=.++...|++++|...|++..+.. +-+...+..+-..+..
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~--- 97 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN--- 97 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH---
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH---
Confidence 4456667777777777777766531 1245666666667777777777777777766542 2245666666666666
Q ss_pred CcchhHHHHHHHHHHHHh
Q 043311 173 GNAKILGDAQKYLMEMVG 190 (257)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~ 190 (257)
.|++++|...|+...+
T Consensus 98 --~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 --EHNANAALASLRAWLL 113 (121)
T ss_dssp --HHHHHHHHHHHHHHHC
T ss_pred --cCCHHHHHHHHHHHHH
Confidence 4447777777776654
No 166
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.40 E-value=0.0041 Score=49.22 Aligned_cols=178 Identities=9% Similarity=-0.004 Sum_probs=105.7
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCC-CCcHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGL-TNNAV-KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~-~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 140 (257)
..+...|++++|...|....+..- .+... .+-.+|.+.|++++|...|+...+.. +-+...|..+-.+|...|++++
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~ 90 (281)
T 2c2l_A 12 NRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLEMESYDE 90 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 456678999999999998887432 22222 46777888999999999999887742 2356788888888999999999
Q ss_pred HHHHHHHHHHCCCCCCH-HHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 043311 141 ALRVFMRMLASGVAPNA-YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGL 219 (257)
Q Consensus 141 a~~~~~~m~~~g~~~~~-~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~ 219 (257)
|...|++..+.+ |+. ..+...+....+ ...... +..........+......+ ..+ ..|+.++|.+.
T Consensus 91 A~~~~~~al~l~--p~~~~~~~~~~~~~~~--------~~~~~~-~~~~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~~~ 157 (281)
T 2c2l_A 91 AIANLQRAYSLA--KEQRLNFGDDIPSALR--------IAKKKR-WNSIEERRIHQESELHSYL-TRL-IAAERERELEE 157 (281)
T ss_dssp HHHHHHHHHHHH--HHTTCCCCSHHHHHHH--------HHHHHH-HHHHHHTCCCCCCHHHHHH-HHH-HHHHHHHHHTT
T ss_pred HHHHHHHHHHhC--ccchhhHHHHHHHHHH--------HHHHHH-HHHHHHHHHhhhHHHHHHH-HHH-HHHHHHHHHHH
Confidence 999998876532 211 111112222222 111111 2223333334444443333 333 35778888888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHH-hhcC-CchhhHHhhhc
Q 043311 220 LQQMKAKGFVPDEKAVKEALID-KRGQ-GFRGVINILFG 256 (257)
Q Consensus 220 ~~~m~~~g~~p~~~t~~~ll~~-~~~~-g~~~~~~~l~~ 256 (257)
+++..+. .|+......-+.. +... +..+.+..+|.
T Consensus 158 ~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~ 194 (281)
T 2c2l_A 158 CQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFS 194 (281)
T ss_dssp TSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 7776543 5665444444443 2222 45666777664
No 167
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.39 E-value=0.0038 Score=42.91 Aligned_cols=97 Identities=11% Similarity=-0.069 Sum_probs=80.0
Q ss_pred CCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 043311 154 APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK 233 (257)
Q Consensus 154 ~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 233 (257)
..+...|..+-..+...|+ ++.|...|+...... +.+...|..+-..+...|++++|...+++..+.. +-+..
T Consensus 6 ~~~~~~~~~~g~~~~~~~~-----~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 78 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRK-----YPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVK 78 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred cccHHHHHHHHHHHHHhCc-----HHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHH
Confidence 3467888888888988555 999999999887642 2356788889999999999999999999998864 33677
Q ss_pred HHHHHHHHhhcCCchhhHHhhhcC
Q 043311 234 AVKEALIDKRGQGFRGVINILFGK 257 (257)
Q Consensus 234 t~~~ll~~~~~~g~~~~~~~l~~k 257 (257)
.+..+-..+...|+.+.|...|++
T Consensus 79 ~~~~l~~~~~~~~~~~~A~~~~~~ 102 (137)
T 3q49_B 79 AHFFLGQCQLEMESYDEAIANLQR 102 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHH
Confidence 888888999999999999988753
No 168
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.39 E-value=0.0018 Score=55.53 Aligned_cols=117 Identities=15% Similarity=0.051 Sum_probs=73.3
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCc
Q 043311 96 ALSKDGLTHEALQLFAQIKDKGHMP-DVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN 174 (257)
Q Consensus 96 ~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~ 174 (257)
.+.+.|++++|.+.|++..+. .| +...|..+-.+|.+.|++++|...|++..+.. +-+...|..+-.+|...
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~---- 87 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMAL---- 87 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHH----
T ss_pred HHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc----
Confidence 345677888888888777664 23 46677777777888888888888887777653 33566777777777773
Q ss_pred chhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHH--HHHcCCHHHHHHHHHH
Q 043311 175 AKILGDAQKYLMEMVGKGMRP-NAGTYTAVFEA--FVRAQKVDEARGLLQQ 222 (257)
Q Consensus 175 ~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~--~~~~~~~~~a~~~~~~ 222 (257)
|++++|.+.|++..+. .| +...+..+-.+ +.+.|++++|.+++++
T Consensus 88 -g~~~eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 88 -GKFRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp -TCHHHHHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred -CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 3478888877776653 22 22333333333 6666777777777664
No 169
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.33 E-value=0.014 Score=39.40 Aligned_cols=88 Identities=19% Similarity=0.068 Sum_probs=42.6
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHH
Q 043311 95 DALSKDGLTHEALQLFAQIKDKGHMPDV----VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN---AYTYAVLIKGL 167 (257)
Q Consensus 95 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~---~~t~~~ll~~~ 167 (257)
..+.+.|++++|...|+...+.. |+. ..+..+-.++.+.|++++|...|++..+.. +-+ ...+..+-..+
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHH
Confidence 34455556666666655555431 221 244444555555555556555555555432 111 33444444445
Q ss_pred HhccCCcchhHHHHHHHHHHHHh
Q 043311 168 AAAADGNAKILGDAQKYLMEMVG 190 (257)
Q Consensus 168 ~~~~~~~~~~~~~a~~~~~~m~~ 190 (257)
...|+ +++|...|+....
T Consensus 87 ~~~g~-----~~~A~~~~~~~~~ 104 (129)
T 2xev_A 87 YGEGK-----NTEAQQTLQQVAT 104 (129)
T ss_dssp HHTTC-----HHHHHHHHHHHHH
T ss_pred HHcCC-----HHHHHHHHHHHHH
Confidence 55222 5555555555543
No 170
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.31 E-value=0.0013 Score=56.50 Aligned_cols=119 Identities=9% Similarity=-0.097 Sum_probs=84.8
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCC-CcH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLT-NNA-VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE 140 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~-p~~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 140 (257)
..+.+.|++++|.+.|++..+..-. +.. ..+-.+|.+.|++++|.+.|++..+.. +-+...|..+-.+|...|++++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 6778899999999999999885322 111 247788899999999999999998862 2356789999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHH--HHhccCCcchhHHHHHHHHHHH
Q 043311 141 ALRVFMRMLASGVAPNAYTYAVLIKG--LAAAADGNAKILGDAQKYLMEM 188 (257)
Q Consensus 141 a~~~~~~m~~~g~~~~~~t~~~ll~~--~~~~~~~~~~~~~~a~~~~~~m 188 (257)
|...|++..+.. +-+...+..+-.+ +.+ .|++++|.+++++-
T Consensus 93 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~-----~g~~~~A~~~~~~~ 136 (477)
T 1wao_1 93 ALRDYETVVKVK-PHDKDAKMKYQECNKIVK-----QKAFERAIAGDEHK 136 (477)
T ss_dssp HHHHHHHHHHHS-TTCTTHHHHHHHHHHHHH-----HHHHCCC------C
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHH-----HHHHHHHhcccccc
Confidence 999999988753 1123344444333 666 45588888887753
No 171
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.31 E-value=0.0021 Score=55.25 Aligned_cols=126 Identities=12% Similarity=0.033 Sum_probs=93.5
Q ss_pred HHHhcCChHHHHHHHHHHHhC---CC---CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----C-CCC-CHHHHH
Q 043311 96 ALSKDGLTHEALQLFAQIKDK---GH---MPD-VVAHTAVIEAYASAGQGKEALRVFMRMLAS-----G-VAP-NAYTYA 161 (257)
Q Consensus 96 ~~~~~~~~~~a~~~~~~m~~~---g~---~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g-~~~-~~~t~~ 161 (257)
.+...|++++|..++++..+. -+ .|+ ..+++.|..+|...|++++|..++++...- | -.| ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999999877543 11 243 368999999999999999999999886632 3 223 347889
Q ss_pred HHHHHHHhccCCcchhHHHHHHHHHHHHh-----CCC-CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 043311 162 VLIKGLAAAADGNAKILGDAQKYLMEMVG-----KGM-RPNA-GTYTAVFEAFVRAQKVDEARGLLQQMKAK 226 (257)
Q Consensus 162 ~ll~~~~~~~~~~~~~~~~a~~~~~~m~~-----~g~-~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 226 (257)
.|-..|.. .|++++|..++++..+ .|- .|++ .+.+.+-.++...+.+++|+.+|.++++.
T Consensus 398 nLa~~~~~-----~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWH-----AGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHH-----TTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----CCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 5559999998887652 232 1222 34566667788889999999999999863
No 172
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.29 E-value=0.0046 Score=52.62 Aligned_cols=125 Identities=13% Similarity=0.065 Sum_probs=96.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPD--------------VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAY 158 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~--------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 158 (257)
+-..|.+.|++++|...|+...+..-... ...|..+-.+|.+.|++++|...|++..+.. +-+..
T Consensus 274 ~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 352 (457)
T 1kt0_A 274 KGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEK 352 (457)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHH
Confidence 55678899999999999998877421111 5789999999999999999999999998764 44788
Q ss_pred HHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHH-HHHHHHH
Q 043311 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQKVDEARG-LLQQMKA 225 (257)
Q Consensus 159 t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~-~~~~m~~ 225 (257)
.|..+-.+|...++ +++|...|+...+. .| +...+..+-..+.+.++.+++.+ +++.|..
T Consensus 353 a~~~~g~a~~~~g~-----~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 353 GLYRRGEAQLLMNE-----FESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HHHHHHHHHHHTTC-----HHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHccC-----HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999555 99999999998864 44 44577888888888888887764 4555543
No 173
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.27 E-value=0.0052 Score=41.82 Aligned_cols=95 Identities=13% Similarity=-0.043 Sum_probs=77.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCC-CHHHHHH
Q 043311 124 AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP-NAGTYTA 202 (257)
Q Consensus 124 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ 202 (257)
.+..+-..+.+.|++++|...|++..+.. +-+...|..+-..+...| ++++|...|+...+. .| +...+..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g-----~~~~A~~~~~~al~l--~P~~~~~~~~ 90 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENE-----KDGLAIIALNHARML--DPKDIAVHAA 90 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 45556677889999999999999998763 347788888888888844 499999999988764 34 5667888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC
Q 043311 203 VFEAFVRAQKVDEARGLLQQMKAK 226 (257)
Q Consensus 203 li~~~~~~~~~~~a~~~~~~m~~~ 226 (257)
+-..+...|++++|...+++..+.
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 91 LAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 889999999999999999998753
No 174
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.25 E-value=0.012 Score=39.88 Aligned_cols=97 Identities=20% Similarity=0.162 Sum_probs=74.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCC----HHH
Q 043311 127 AVIEAYASAGQGKEALRVFMRMLASGVAPNA---YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN----AGT 199 (257)
Q Consensus 127 ~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~---~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~ 199 (257)
.+-..+...|++++|...|++..+..- .+. ..+..+-..+...|+ +++|...|+...+. .|+ ...
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~-----~~~A~~~~~~~~~~--~p~~~~~~~~ 78 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRN-----FQLAEAQFRDLVSR--YPTHDKAAGG 78 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHH--CTTSTTHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhcc-----HHHHHHHHHHHHHH--CCCCcccHHH
Confidence 345567889999999999999887531 122 467777778888444 99999999998764 243 456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 043311 200 YTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK 233 (257)
Q Consensus 200 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 233 (257)
+..+-..+...|++++|...|++..... |+..
T Consensus 79 ~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~ 110 (129)
T 2xev_A 79 LLKLGLSQYGEGKNTEAQQTLQQVATQY--PGSD 110 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTSH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCh
Confidence 7778889999999999999999998753 5543
No 175
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.21 E-value=0.015 Score=45.95 Aligned_cols=90 Identities=17% Similarity=0.032 Sum_probs=75.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcc
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMP-DVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA 171 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~ 171 (257)
+-..+.+.|++++|...|+...+. .| +...|..+-.+|.+.|++++|...+++..+.. +-+...|..+-.++...|
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g 86 (281)
T 2c2l_A 10 QGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQLEME 86 (281)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 556788999999999999988875 34 67888889999999999999999999988753 346788888888898854
Q ss_pred CCcchhHHHHHHHHHHHHh
Q 043311 172 DGNAKILGDAQKYLMEMVG 190 (257)
Q Consensus 172 ~~~~~~~~~a~~~~~~m~~ 190 (257)
+ +++|...|+...+
T Consensus 87 ~-----~~~A~~~~~~al~ 100 (281)
T 2c2l_A 87 S-----YDEAIANLQRAYS 100 (281)
T ss_dssp C-----HHHHHHHHHHHHH
T ss_pred C-----HHHHHHHHHHHHH
Confidence 4 9999999988764
No 176
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.20 E-value=0.00095 Score=45.12 Aligned_cols=82 Identities=10% Similarity=0.069 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHHHHhCCCC-CcHH----HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 043311 68 PTDPRNLQEIFHKMRTEGLT-NNAV----KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEAL 142 (257)
Q Consensus 68 ~~~~~~a~~~~~~m~~~~~~-p~~~----~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 142 (257)
.|++++|...|++..+.+.. |+.. .+-.+|.+.|++++|...|+...+.. +-+...+..+-.++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 45566666666666554311 2211 24445555666666666666555432 113445555555566666666666
Q ss_pred HHHHHHHH
Q 043311 143 RVFMRMLA 150 (257)
Q Consensus 143 ~~~~~m~~ 150 (257)
..|++..+
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655543
No 177
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.19 E-value=0.0074 Score=41.43 Aligned_cols=101 Identities=9% Similarity=0.038 Sum_probs=73.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCC----HHHHHHHHHH
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASG--VAPN----AYTYAVLIKG 166 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~~~----~~t~~~ll~~ 166 (257)
+=..+.+.|++++|++.|+...+.. +-+...|+.+=.+|.+.|++++|...|++..+.+ ..++ ..+|..+-..
T Consensus 14 lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~ 92 (127)
T 4gcn_A 14 LGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNA 92 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHH
Confidence 5678899999999999999987742 2356788889999999999999999999877532 1222 1355555566
Q ss_pred HHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHH
Q 043311 167 LAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYT 201 (257)
Q Consensus 167 ~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 201 (257)
+... |.++.|.+.|+..... .||..+..
T Consensus 93 ~~~~-----~~~~~A~~~~~kal~~--~~~~~~~~ 120 (127)
T 4gcn_A 93 FQKQ-----NDLSLAVQWFHRSLSE--FRDPELVK 120 (127)
T ss_dssp HHHT-----TCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred HHHc-----CCHHHHHHHHHHHHhh--CcCHHHHH
Confidence 6664 4499999999987652 46655443
No 178
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.08 E-value=0.012 Score=50.01 Aligned_cols=124 Identities=10% Similarity=0.030 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHhccCCcchhHHHHHHHHHH
Q 043311 122 VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPN--------------AYTYAVLIKGLAAAADGNAKILGDAQKYLME 187 (257)
Q Consensus 122 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~--------------~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~ 187 (257)
...|..+=..|.+.|++++|...|++..+..-... ...|..+-.+|.+.++ ++.|...++.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~-----~~~A~~~~~~ 342 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLRE-----YTKAVECCDK 342 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcC-----HHHHHHHHHH
Confidence 45677788889999999999999999886421111 5888889899999555 9999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCchhhHHh
Q 043311 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVP-DEKAVKEALIDKRGQGFRGVINI 253 (257)
Q Consensus 188 m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~~~~ 253 (257)
..+.. +-+...|..+-.+|...|++++|...|++..+. .| +...+..+-..+...|+.+.+++
T Consensus 343 al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 343 ALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp HHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 87642 235678888899999999999999999999875 34 44566666667777777666553
No 179
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.06 E-value=0.015 Score=47.96 Aligned_cols=125 Identities=10% Similarity=-0.006 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHC---------------CCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHH
Q 043311 123 VAHTAVIEAYASAGQGKEALRVFMRMLAS---------------GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME 187 (257)
Q Consensus 123 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------------g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~ 187 (257)
..|..+=..+.+.|++++|...|++..+. --+.+..+|..+-..|.+.++ +++|.+.++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~-----~~~A~~~~~~ 298 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSD-----WQGAVDSCLE 298 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccC-----HHHHHHHHHH
Confidence 34666667788888888888888877651 112245777888888888444 9999999988
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhh
Q 043311 188 MVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINIL 254 (257)
Q Consensus 188 m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l 254 (257)
..+.. +-+...|..+-.+|...|++++|.+.|++..+.. +-+...+..+-..+...+..+.+++.
T Consensus 299 al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 299 ALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87642 2256678888888999999999999999988753 22556666666667777776666543
No 180
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.03 E-value=0.039 Score=38.39 Aligned_cols=113 Identities=10% Similarity=-0.013 Sum_probs=57.0
Q ss_pred CHHHHHHHHHHHHhCCCCCcHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHH
Q 043311 70 DPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYAS----AGQGKEALRVF 145 (257)
Q Consensus 70 ~~~~a~~~~~~m~~~~~~p~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~~a~~~~ 145 (257)
++++|.+.|+...+.| .+... |-..|...+.++.|.+.|+...+.| +...+..|=..|.. .++.++|+.+|
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~-lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~ 84 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC-LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYY 84 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH-HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh-HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence 4566666666666655 22322 4444444455566666666665543 44555555555555 55666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhC
Q 043311 146 MRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK 191 (257)
Q Consensus 146 ~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~ 191 (257)
++-.+.| +...+..+-..|.. |.+-.++.++|.++|+.-.+.
T Consensus 85 ~~Aa~~g---~~~a~~~Lg~~y~~-G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 85 SKACGLN---DQDGCLILGYKQYA-GKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHH-TSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHcCC---CHHHHHHHHHHHHC-CCCCCcCHHHHHHHHHHHHHC
Confidence 6655544 33344444443333 111122255555555554443
No 181
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.98 E-value=0.018 Score=40.93 Aligned_cols=62 Identities=23% Similarity=0.188 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043311 158 YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225 (257)
Q Consensus 158 ~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 225 (257)
..|..+-.++.+.|+ ++.|...++...... +-+...|..+-.+|...|++++|...|++...
T Consensus 64 ~~~~nla~~~~~~~~-----~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 64 PLYANMSQCYLNIGD-----LHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCc-----HHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 344444444444222 555555555444321 11334444455555555555555555555444
No 182
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.94 E-value=0.0071 Score=39.70 Aligned_cols=91 Identities=11% Similarity=0.001 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-----
Q 043311 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD----- 231 (257)
Q Consensus 157 ~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----- 231 (257)
...|..+-..+... |++++|.+.|+...+.. +.+...|..+-.++.+.|++++|...+++..+. .|+
T Consensus 4 ~~~~~~~g~~~~~~-----~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 75 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQ-----GLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVA 75 (111)
T ss_dssp HHHHHHHHHHHHTT-----TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHH
T ss_pred HHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHH
Confidence 33444444555552 33666666666554421 123455555556666666666666666666543 233
Q ss_pred --HHHHHHHHHHhhcCCchhhHHhhh
Q 043311 232 --EKAVKEALIDKRGQGFRGVINILF 255 (257)
Q Consensus 232 --~~t~~~ll~~~~~~g~~~~~~~l~ 255 (257)
...+..+-.++...|..+.+...|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 76 IRSKLQYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHHHHHHhHhhhHhHH
Confidence 333444444444455444444333
No 183
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.93 E-value=0.014 Score=48.28 Aligned_cols=118 Identities=8% Similarity=0.057 Sum_probs=90.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC--------------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDK--------------GHMP-DVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA 157 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~--------------g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 157 (257)
+-..+.+.|++++|.+.|+...+. ...| +...|..+-.+|.+.|++++|...+++..+.. +-+.
T Consensus 229 ~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~ 307 (370)
T 1ihg_A 229 IGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNT 307 (370)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhH
Confidence 556788999999999999887751 0122 45788889999999999999999999998763 3467
Q ss_pred HHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 043311 158 YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQKVDEARG 218 (257)
Q Consensus 158 ~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~ 218 (257)
..|..+-.+|...++ +++|.+.|+...+. .| +...+..+-..+.+.++.+++.+
T Consensus 308 ~a~~~lg~~~~~~g~-----~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 308 KALYRRAQGWQGLKE-----YDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHTTC-----HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccC-----HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888899999555 99999999988764 34 45566666666666666666554
No 184
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.87 E-value=0.047 Score=38.71 Aligned_cols=98 Identities=17% Similarity=0.131 Sum_probs=71.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC-------CC---------CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDK-------GH---------MP-DVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~-------g~---------~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~ 155 (257)
.-..+.+.|++++|...|....+. .- .| +...|..+-.+|.+.|++++|...++...+.+ +.
T Consensus 17 ~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~ 95 (162)
T 3rkv_A 17 KGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ET 95 (162)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-Cc
Confidence 445677888888888888776653 00 11 23578888888889999999999998888753 44
Q ss_pred CHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHH
Q 043311 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAG 198 (257)
Q Consensus 156 ~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 198 (257)
+...|..+-.++...|+ +++|...|+..... .|+..
T Consensus 96 ~~~a~~~~g~~~~~~g~-----~~~A~~~~~~al~l--~p~~~ 131 (162)
T 3rkv_A 96 NEKALFRRAKARIAAWK-----LDEAEEDLKLLLRN--HPAAA 131 (162)
T ss_dssp CHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHH--CGGGH
T ss_pred chHHHHHHHHHHHHHhc-----HHHHHHHHHHHHhc--CCCCH
Confidence 67788888888888544 99999988887753 45543
No 185
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.78 E-value=0.0053 Score=50.01 Aligned_cols=124 Identities=13% Similarity=0.048 Sum_probs=68.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHH------------------HHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVV------------------AHTAVIEAYASAGQGKEALRVFMRMLASGVA 154 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~------------------~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 154 (257)
+-..+.+.|++++|...|+...+. .|+.. .|..+-.+|.+.|++++|...|++..+.. +
T Consensus 185 ~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 261 (338)
T 2if4_A 185 DGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE-E 261 (338)
T ss_dssp HHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC-T
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 445667788899999988887653 24433 77888888889999999999998887653 3
Q ss_pred CCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCH-HHHHHHHHH-HHHcCCHHHHHHHHHHHHHC
Q 043311 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA-GTYTAVFEA-FVRAQKVDEARGLLQQMKAK 226 (257)
Q Consensus 155 ~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~-~~~~~~~~~a~~~~~~m~~~ 226 (257)
-+...|..+-.+|...|+ +++|...|+...+. .|+. ..+..+-.. ....+..+.+..+|.+|...
T Consensus 262 ~~~~a~~~lg~a~~~~g~-----~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 262 KNPKALFRRGKAKAELGQ-----MDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp TCHHHHHHHHHHHHTTTC-----HHHHHHHHHHTTC--------------------------------------
T ss_pred CCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 467888888888888444 99999988887643 3433 334444333 23345667777788877643
No 186
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.69 E-value=0.025 Score=48.63 Aligned_cols=120 Identities=9% Similarity=0.057 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHH
Q 043311 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYA--VLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTY 200 (257)
Q Consensus 123 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~--~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 200 (257)
..|-..+..+.+.++++.|..+|+.. +.. ..+...|. +.+..... +..+.|..+|+...+. .+-+...+
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~------~d~~~ar~ife~al~~-~~~~~~~~ 357 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYAT------GSRATPYNIFSSGLLK-HPDSTLLK 357 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHH------CCSHHHHHHHHHHHHH-CTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHC------CChHHHHHHHHHHHHH-CCCCHHHH
Confidence 34555666666667788888888777 221 12333443 22222211 1267788888776653 11123445
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 201 TAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 201 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
...++-..+.|+.+.|..+|++.. -....|...+.--...|+.+.+..+++
T Consensus 358 ~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~ 408 (493)
T 2uy1_A 358 EEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVD 408 (493)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 556666667788888888888852 245566666665566677777766554
No 187
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.69 E-value=0.082 Score=36.69 Aligned_cols=116 Identities=9% Similarity=-0.038 Sum_probs=87.7
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHH
Q 043311 101 GLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGD 180 (257)
Q Consensus 101 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~ 180 (257)
++.++|.+.|+...+.| .|+. . |=..|...+.+++|+.+|++-.+.| +...+..+-..|.. |.+..++.++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~-G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFG--C--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYEN-GKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTH--H--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH-CSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhh--h--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHc-CCCCCccHHH
Confidence 45788999999998887 2333 2 5555666678889999999998876 56666666666655 2222345999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCC
Q 043311 181 AQKYLMEMVGKGMRPNAGTYTAVFEAFVR----AQKVDEARGLLQQMKAKGF 228 (257)
Q Consensus 181 a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~ 228 (257)
|.++|+.-.+.| +...+..|-..|.. .++.++|.+.|++..+.|.
T Consensus 80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999988765 56777778888888 7899999999999998874
No 188
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.66 E-value=0.038 Score=47.43 Aligned_cols=121 Identities=11% Similarity=0.028 Sum_probs=87.3
Q ss_pred ccCCCCHHHHHHHHHHHHhC---CCCCc---HH----HHHHHHHhcCChHHHHHHHHHHHhC-----C-CCCCH-HHHHH
Q 043311 65 DEEPTDPRNLQEIFHKMRTE---GLTNN---AV----KMFDALSKDGLTHEALQLFAQIKDK-----G-HMPDV-VAHTA 127 (257)
Q Consensus 65 ~~~~~~~~~a~~~~~~m~~~---~~~p~---~~----~ll~~~~~~~~~~~a~~~~~~m~~~-----g-~~p~~-~~~~~ 127 (257)
+...|++++|..++++..+. -+.|+ .. .|..+|...|++++|..++++..+- | -.|++ .+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 45789999999999888762 22232 22 3778889999999999999887532 2 23544 57999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH-----CCC-CCCH-HHHHHHHHHHHhccCCcchhHHHHHHHHHHHHh
Q 043311 128 VIEAYASAGQGKEALRVFMRMLA-----SGV-APNA-YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190 (257)
Q Consensus 128 li~~~~~~~~~~~a~~~~~~m~~-----~g~-~~~~-~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~ 190 (257)
|=..|...|++++|..++++-.+ .|- .|++ .+.+.+-..+.. .+.++.|+.+|..+.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e-----~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEME-----LRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence 99999999999999999987653 232 2333 444555555555 6668999999998875
No 189
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.51 E-value=0.043 Score=36.35 Aligned_cols=77 Identities=16% Similarity=0.123 Sum_probs=39.0
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHH
Q 043311 106 ALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYL 185 (257)
Q Consensus 106 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~ 185 (257)
+.+.|+...+.. +-+...|..+-..|...|++++|...|++..+.. +.+...|..+-..+...|+ +++|...|
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~-----~~~A~~~~ 76 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGD-----RAGARQAW 76 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC-----HHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCC-----HHHHHHHH
Confidence 444455444421 1234555555555666666666666666555432 2234455555555555332 55555555
Q ss_pred HHHH
Q 043311 186 MEMV 189 (257)
Q Consensus 186 ~~m~ 189 (257)
+...
T Consensus 77 ~~al 80 (115)
T 2kat_A 77 ESGL 80 (115)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.40 E-value=0.013 Score=47.71 Aligned_cols=125 Identities=12% Similarity=0.084 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH------------------HHHHHHHHHHhccCCcchhHHHHHH
Q 043311 122 VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAY------------------TYAVLIKGLAAAADGNAKILGDAQK 183 (257)
Q Consensus 122 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~------------------t~~~ll~~~~~~~~~~~~~~~~a~~ 183 (257)
...|..+-..+.+.|++++|...|++..+. .|+.. .|..+-..+.+.++ +++|..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~-----~~~A~~ 251 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKR-----YDEAIG 251 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTC-----CHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCC-----HHHHHH
Confidence 344666677788899999999999997764 34433 77788888888444 999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHh--hcCCchhhHHhhhc
Q 043311 184 YLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDK--RGQGFRGVINILFG 256 (257)
Q Consensus 184 ~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~--~~~g~~~~~~~l~~ 256 (257)
.++...+.. +-+...|..+-.+|...|++++|...|++..+. .|+.......+..+ ...+..+.+..+|.
T Consensus 252 ~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~ 323 (338)
T 2if4_A 252 HCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQKEMYK 323 (338)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999887642 236678888999999999999999999998653 45433333333322 23344555555543
No 191
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.22 E-value=0.029 Score=36.57 Aligned_cols=54 Identities=22% Similarity=0.253 Sum_probs=23.4
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043311 96 ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150 (257)
Q Consensus 96 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 150 (257)
.+.+.|++++|.+.|+...+.. +.+...|..+-.+|.+.|++++|...|++..+
T Consensus 13 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 13 SLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3444444444444444443321 11333444444444444444444444444443
No 192
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.20 E-value=0.092 Score=32.65 Aligned_cols=73 Identities=21% Similarity=0.188 Sum_probs=46.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~ 167 (257)
+-..+.+.|++++|...|+...+.. +.+...|..+-.++.+.|++++|...|++..+.. +-+...+..+-..+
T Consensus 15 la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 15 LGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 4456677778888888777776542 2245667777777777888888888887776542 22444444444433
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=96.16 E-value=0.22 Score=35.70 Aligned_cols=107 Identities=20% Similarity=0.124 Sum_probs=70.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCC-C-----CH-----HHHHHHHHHHHhcCChHHHHHHHHHHHHC-----CCCCC
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHM-P-----DV-----VAHTAVIEAYASAGQGKEALRVFMRMLAS-----GVAPN 156 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~-p-----~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~~~~ 156 (257)
.-..+.+.|++++|.+.|+...+.... | +. ..|+.+=.++.+.|++++|+..|++-.+. -+.|+
T Consensus 17 ~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd 96 (159)
T 2hr2_A 17 DAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD 96 (159)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc
Confidence 445677889999999999988764211 0 22 28888888999999999999999888763 11443
Q ss_pred -HHHH----HHHHHHHHhccCCcchhHHHHHHHHHHHHh-----CCCCCCHHHHHHHH
Q 043311 157 -AYTY----AVLIKGLAAAADGNAKILGDAQKYLMEMVG-----KGMRPNAGTYTAVF 204 (257)
Q Consensus 157 -~~t~----~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~~~~li 204 (257)
...| ...-.++.. .|++++|...|+...+ .|+.+......-.+
T Consensus 97 ~~~A~~~~~~~rG~aL~~-----lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~ 149 (159)
T 2hr2_A 97 EGKLWISAVYSRALALDG-----LGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVA 149 (159)
T ss_dssp HHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHH
T ss_pred hHHHHHHHHHhHHHHHHH-----CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 3455 555556666 3447888877776652 45555544443333
No 194
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.01 E-value=0.15 Score=33.63 Aligned_cols=77 Identities=16% Similarity=0.073 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhCCCC-CcH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043311 73 NLQEIFHKMRTEGLT-NNA-VKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150 (257)
Q Consensus 73 ~a~~~~~~m~~~~~~-p~~-~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 150 (257)
.+...|+...+..-. +.. ..+-..|.+.|++++|...|+...+.. +.+...|..+-.+|...|++++|...|++..+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666666553211 111 135566777788888888877776642 22456677777777778888888877777654
No 195
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.88 E-value=0.098 Score=44.07 Aligned_cols=93 Identities=12% Similarity=0.019 Sum_probs=70.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC--C-CCC----CHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHh-----CC-CC
Q 043311 128 VIEAYASAGQGKEALRVFMRMLAS--G-VAP----NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG-----KG-MR 194 (257)
Q Consensus 128 li~~~~~~~~~~~a~~~~~~m~~~--g-~~~----~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~-----~g-~~ 194 (257)
.+.-+.+.|++++|..++++..+. . +.| ...+++.+...|.. .|++++|..++++... .| ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~-----~g~~~eA~~~~~~~L~i~~~~lg~~H 367 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACIN-----LGLLEEALFYGTRTMEPYRIFFPGSH 367 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHHHHHHSCSSC
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHh-----hccHHHHHHHHHHHHHhHHHHcCCCC
Confidence 355577789999999999988753 1 222 34788899999998 4559999999887663 22 23
Q ss_pred CCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043311 195 PNA-GTYTAVFEAFVRAQKVDEARGLLQQMKA 225 (257)
Q Consensus 195 p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~ 225 (257)
|++ .+++.|-..|...|++++|+.++++..+
T Consensus 368 p~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 368 PVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 333 4689999999999999999999998864
No 196
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=95.85 E-value=0.16 Score=31.50 Aligned_cols=62 Identities=21% Similarity=0.233 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHh
Q 043311 123 VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190 (257)
Q Consensus 123 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~ 190 (257)
..|..+-..+...|++++|...|++..+.. +.+...|..+-..+...|+ +++|...|++..+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~-----~~~A~~~~~~a~~ 71 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGD-----YDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhh-----HHHHHHHHHHHHh
Confidence 445555555666666666666666655432 2244555555555555333 6666666655543
No 197
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=95.82 E-value=0.32 Score=34.82 Aligned_cols=112 Identities=16% Similarity=0.104 Sum_probs=82.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC------CH-----HHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhC-
Q 043311 124 AHTAVIEAYASAGQGKEALRVFMRMLASGVAP------NA-----YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGK- 191 (257)
Q Consensus 124 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~------~~-----~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~- 191 (257)
.+...=..+.+.|++++|...|++-.+..-.. +. ..|..+-.++.+.|+ +++|...++...+.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr-----~~eAl~~~~kAL~l~ 87 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS-----FDEALHSADKALHYF 87 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHhh
Confidence 34555566888999999999999988642110 22 388888888888554 99999998887752
Q ss_pred ----CCCCCH-HHH----HHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHHH
Q 043311 192 ----GMRPNA-GTY----TAVFEAFVRAQKVDEARGLLQQMKA-----KGFVPDEKAVKEALI 240 (257)
Q Consensus 192 ----g~~p~~-~~~----~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~t~~~ll~ 240 (257)
.+.|+. ..| ...=.++...|++++|+..|++..+ .|+.+........+.
T Consensus 88 n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~ 150 (159)
T 2hr2_A 88 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAI 150 (159)
T ss_dssp HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHH
T ss_pred hccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 226654 456 7777888999999999999999864 477777666655554
No 198
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=95.79 E-value=0.062 Score=34.80 Aligned_cols=64 Identities=19% Similarity=0.197 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043311 156 NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225 (257)
Q Consensus 156 ~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 225 (257)
+...|..+-..+...|+ +++|...|+...+.. +-+...|..+-.+|...|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~-----~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDN-----ASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444455555555222 555555555554321 11234455555555555555555555555543
No 199
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.69 E-value=0.12 Score=43.65 Aligned_cols=86 Identities=9% Similarity=-0.026 Sum_probs=65.8
Q ss_pred cCChHHHHHHHHHHHHC--C-CCC----CHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHh-----CC-CCCCH-HHH
Q 043311 135 AGQGKEALRVFMRMLAS--G-VAP----NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG-----KG-MRPNA-GTY 200 (257)
Q Consensus 135 ~~~~~~a~~~~~~m~~~--g-~~~----~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~-----~g-~~p~~-~~~ 200 (257)
.|++++|..++++..+. . +.| ...+++.+..+|.. .|++++|..++++..+ .| -.|++ .+|
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~-----~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 385 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLY-----MQDWEGALKYGQKIIKPYSKHYPVYSLNVASMW 385 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHh-----hcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Confidence 46889999999886642 1 222 24789999999999 4559999999988763 22 23433 469
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 043311 201 TAVFEAFVRAQKVDEARGLLQQMKA 225 (257)
Q Consensus 201 ~~li~~~~~~~~~~~a~~~~~~m~~ 225 (257)
+.|-..|...|++++|+.++++..+
T Consensus 386 ~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 386 LKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHH
Confidence 9999999999999999999998864
No 200
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.58 E-value=0.078 Score=44.67 Aligned_cols=92 Identities=15% Similarity=0.035 Sum_probs=70.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCC---CC---CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----C-CCC-CHH
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKG---HM---PD-VVAHTAVIEAYASAGQGKEALRVFMRMLAS-----G-VAP-NAY 158 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g---~~---p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g-~~~-~~~ 158 (257)
.+..+.+.|++++|.++++...+.. +. |+ ..+++.+..+|...|++++|..++++...- | -.| ...
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 4556778899999999999887531 22 22 468999999999999999999999887632 2 223 347
Q ss_pred HHHHHHHHHHhccCCcchhHHHHHHHHHHHH
Q 043311 159 TYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189 (257)
Q Consensus 159 t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~ 189 (257)
+|+.|-..|.. .|++++|..++++..
T Consensus 373 ~l~nLa~~~~~-----~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 373 QVMKVGKLQLH-----QGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHH-----TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-----cCCHHHHHHHHHHHH
Confidence 88899999999 555999999888765
No 201
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.54 E-value=0.17 Score=45.74 Aligned_cols=18 Identities=22% Similarity=0.187 Sum_probs=9.8
Q ss_pred HHHHHHhcCChHHHHHHH
Q 043311 93 MFDALSKDGLTHEALQLF 110 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~ 110 (257)
++..+.+.|.++.|.++.
T Consensus 635 ~~~~l~~~~~~~~a~~~~ 652 (814)
T 3mkq_A 635 IARFLEGQEYYEEALNIS 652 (814)
T ss_dssp HHHHHHHTTCHHHHHHHC
T ss_pred HHHHHHhCCChHHheecC
Confidence 455555566655555443
No 202
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=95.31 E-value=0.15 Score=32.93 Aligned_cols=56 Identities=14% Similarity=0.176 Sum_probs=25.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRML 149 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 149 (257)
+-.+|.+.|++++|...|+...+.. +-+...|..+-.+|...|++++|...|++..
T Consensus 13 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 13 LAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444555555555555444431 1123344444455555555555555554433
No 203
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.28 E-value=0.56 Score=42.29 Aligned_cols=136 Identities=15% Similarity=0.037 Sum_probs=78.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~ 172 (257)
-.......|+++.|.++.+.+ .+...|..+=..+.+.++++.|.+.|.++.. |..+...+...++
T Consensus 658 ~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~ 722 (814)
T 3mkq_A 658 KFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNN 722 (814)
T ss_dssp HHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTC
T ss_pred heehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCC
Confidence 355667889999999986543 3678999999999999999999999998863 3334444444333
Q ss_pred CcchhHHHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHH
Q 043311 173 GNAKILGDAQKYLMEMVGKGMRPN-------AGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE----KAVKEALID 241 (257)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~~g~~p~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~t~~~ll~~ 241 (257)
.+...++-+.....|-.-. ..-+...++.|.+.+++++|..+-+. ..|.. ......-..
T Consensus 723 -----~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~~~~~~~A~~lA~~-----~~~~~~~i~~~~~~~~~~ 792 (814)
T 3mkq_A 723 -----KEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLIKSQRFSEAAFLGST-----YGLGDNEVNDIVTKWKEN 792 (814)
T ss_dssp -----HHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHH-----TTCCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHHHHHcCChHHHHHHHHH-----hCCChHHHHHHHHHHHHH
Confidence 3433333333333221000 00123344445555555555554443 34555 344444445
Q ss_pred hhcCCchhhHHh
Q 043311 242 KRGQGFRGVINI 253 (257)
Q Consensus 242 ~~~~g~~~~~~~ 253 (257)
+...|+...++.
T Consensus 793 L~~~~~~~~a~~ 804 (814)
T 3mkq_A 793 LILNGKNTVSER 804 (814)
T ss_dssp HHTTTCHHHHTT
T ss_pred HHhccchhHHHh
Confidence 566676544443
No 204
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.22 E-value=0.18 Score=42.51 Aligned_cols=86 Identities=12% Similarity=0.006 Sum_probs=65.9
Q ss_pred hcCChHHHHHHHHHHHhC---CC---CCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHC-----C-CCCC-HHHHHHHH
Q 043311 99 KDGLTHEALQLFAQIKDK---GH---MPDV-VAHTAVIEAYASAGQGKEALRVFMRMLAS-----G-VAPN-AYTYAVLI 164 (257)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~---g~---~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g-~~~~-~~t~~~ll 164 (257)
..|++++|..++++..+. -+ .|++ .+++.|-.+|...|++++|..++++...- | -.|+ ..+|+.|-
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357889999999877542 12 2333 68999999999999999999999887642 3 2333 47899999
Q ss_pred HHHHhccCCcchhHHHHHHHHHHHH
Q 043311 165 KGLAAAADGNAKILGDAQKYLMEMV 189 (257)
Q Consensus 165 ~~~~~~~~~~~~~~~~a~~~~~~m~ 189 (257)
..|.. .|++++|..++++..
T Consensus 390 ~~~~~-----qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 390 RLYMG-----LENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHH-----TTCHHHHHHHHHHHH
T ss_pred HHHHh-----ccCHHHHHHHHHHHH
Confidence 99999 555999999988765
No 205
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=95.08 E-value=1.2 Score=38.92 Aligned_cols=173 Identities=9% Similarity=-0.042 Sum_probs=117.4
Q ss_pred CHHHHHHHHHHHHhCCCCCc-HH----HHHHHHHhcCC-------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-
Q 043311 70 DPRNLQEIFHKMRTEGLTNN-AV----KMFDALSKDGL-------THEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG- 136 (257)
Q Consensus 70 ~~~~a~~~~~~m~~~~~~p~-~~----~ll~~~~~~~~-------~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~- 136 (257)
-.++|.+.++.+....-.-. .. .++..+.+... ++++++.++.+.+.. +-+..+|+---.++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 33567788877777432221 11 13333332111 889999999988752 235678888888888888
Q ss_pred -ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-----
Q 043311 137 -QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA----- 210 (257)
Q Consensus 137 -~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~----- 210 (257)
+++++++.++++.+.+.+ |...|+.--..+.+.+. .++++.+.++.+.+... -|...|+..-..+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~----~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAV----APAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCC----CHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCC
T ss_pred ccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCC----ChHHHHHHHHHHHHHCC-CCccHHHHHHHHHHhhccccc
Confidence 779999999999987644 88899988777777541 38889998888876532 2667787777666663
Q ss_pred ---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhh
Q 043311 211 ---------QKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGV 250 (257)
Q Consensus 211 ---------~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 250 (257)
+.++++.+++++..... +-|...|...-..+...+..+.
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 56789999999888743 2255666666555555554333
No 206
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=94.83 E-value=1 Score=38.48 Aligned_cols=118 Identities=15% Similarity=0.125 Sum_probs=81.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcc
Q 043311 94 FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHT--AVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAA 171 (257)
Q Consensus 94 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~ 171 (257)
+..+.+.+.++.|..+|+.. +.. ..+...|- +.|.... .++.+.|..+|+...+.- .-+...|...++...+.|
T Consensus 293 ~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~ 368 (493)
T 2uy1_A 293 LNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIG 368 (493)
T ss_dssp HHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcC
Confidence 34444567899999999998 321 12333343 3333322 347999999999987652 223445666677667744
Q ss_pred CCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043311 172 DGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225 (257)
Q Consensus 172 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 225 (257)
+ .+.|..+|+... -....|...++-=...|+.+.+..+++++..
T Consensus 369 ~-----~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 369 D-----EENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp C-----HHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred C-----HHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4 899999999873 2577888888877788999999999988874
No 207
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.53 E-value=0.77 Score=31.97 Aligned_cols=130 Identities=10% Similarity=0.028 Sum_probs=64.7
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhH
Q 043311 99 KDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKIL 178 (257)
Q Consensus 99 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~ 178 (257)
-.|.+++..++..+.... .+..-||=+|.-...+-+=+-.+++++..-+. .|. ..+|++
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi---------------s~C~Nl 77 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL---------------DKCQNL 77 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG---------------GGCSCT
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc---------------HhhhcH
Confidence 367777777777776654 35566666666666666666666666655431 110 012223
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhh
Q 043311 179 GDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILF 255 (257)
Q Consensus 179 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~ 255 (257)
......+-.+ ..+...++..++..+..|.-|+..+++.++.. +.+|++.....+-.||.+-|+...++.+.
T Consensus 78 KrVi~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl 148 (172)
T 1wy6_A 78 KSVVECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLL 148 (172)
T ss_dssp HHHHHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHH
Confidence 3333333322 12344445555555555555555555554322 23444445555555555555555544443
No 208
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=94.42 E-value=0.31 Score=34.83 Aligned_cols=28 Identities=25% Similarity=0.183 Sum_probs=14.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043311 212 KVDEARGLLQQMKAKGFVPDEKAVKEALID 241 (257)
Q Consensus 212 ~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 241 (257)
++++|.+.|++..+ +.|+...|..-+..
T Consensus 106 ~~~eA~~~~~kAl~--l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 106 NFDLATQFFQQAVD--EQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 56666666666555 34555555444443
No 209
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.40 E-value=0.63 Score=32.97 Aligned_cols=82 Identities=13% Similarity=0.067 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCC-C-HH-HHHHHHHHHHHcCCHHH
Q 043311 139 KEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP-N-AG-TYTAVFEAFVRAQKVDE 215 (257)
Q Consensus 139 ~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p-~-~~-~~~~li~~~~~~~~~~~ 215 (257)
..+.+-|.+..+.|. ++..+...+-.++++..+ .+.++++..+|++..+.+ .| + .. .|+ |--+|.+.|++++
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~--~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~-LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKY--NDDIRKGIVLLEELLPKG-SKEEQRDYVFY-LAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSS--HHHHHHHHHHHHHHHHHS-CHHHHHHHHHH-HHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHhcC-CccchHHHHHH-HHHHHHHccCHHH
Confidence 334444444444443 455555555555555443 334556666666655432 12 1 11 232 3334466666666
Q ss_pred HHHHHHHHHH
Q 043311 216 ARGLLQQMKA 225 (257)
Q Consensus 216 a~~~~~~m~~ 225 (257)
|.++++.+.+
T Consensus 90 A~~y~~~lL~ 99 (152)
T 1pc2_A 90 ALKYVRGLLQ 99 (152)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 6666666665
No 210
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=94.38 E-value=1.7 Score=35.37 Aligned_cols=207 Identities=9% Similarity=0.002 Sum_probs=126.4
Q ss_pred hhhcccCCCCCCcccccc---ccccCCC-CHHHHHHHHHHHHhCCCCCcHH-H----HHHHHHhcC-ChHHHHHHHHHHH
Q 043311 45 KYVNTKSKLPPPYDPFKK---VVDEEPT-DPRNLQEIFHKMRTEGLTNNAV-K----MFDALSKDG-LTHEALQLFAQIK 114 (257)
Q Consensus 45 ~~~~~~~~~~p~~~~~~~---~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~-~----ll~~~~~~~-~~~~a~~~~~~m~ 114 (257)
....+.-.+.|+..+.=. ..+...| ++++++.+++.+.......... . ++..+ .+ ++++++++++.+.
T Consensus 75 ~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l--~~~~~~~EL~~~~k~L 152 (349)
T 3q7a_A 75 ELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRI--SPQDPVSEIEYIHGSL 152 (349)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH--CCSCCHHHHHHHHHHT
T ss_pred HHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh--cCCChHHHHHHHHHHH
Confidence 334444455565444322 4444556 5889999998888754333221 1 33222 14 6788888888887
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC--CcchhHHHHHHH
Q 043311 115 DKGHMPDVVAHTAVIEAYASAGQGK--------EALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD--GNAKILGDAQKY 184 (257)
Q Consensus 115 ~~g~~p~~~~~~~li~~~~~~~~~~--------~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~--~~~~~~~~a~~~ 184 (257)
+.. .-|-..|+----.+.+.+.++ ++++.++++.+.+.. |...|+-.-..+.+.+. .....++++.+.
T Consensus 153 ~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~ 230 (349)
T 3q7a_A 153 LPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQDELIY 230 (349)
T ss_dssp SSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence 642 235667776666666555555 888999998887533 78888887777766543 122346778888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHCC-----CCCCHHHHHHHH
Q 043311 185 LMEMVGKGMRPNAGTYTAVFEAFVRAQKV--------------------DEARGLLQQMKAKG-----FVPDEKAVKEAL 239 (257)
Q Consensus 185 ~~~m~~~g~~p~~~~~~~li~~~~~~~~~--------------------~~a~~~~~~m~~~g-----~~p~~~t~~~ll 239 (257)
+++..... +-|...|+-+-..+.+.|+- ....+...++...+ -.++...+..+.
T Consensus 231 ~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~ 309 (349)
T 3q7a_A 231 ILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLA 309 (349)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHH
Confidence 77766532 23667787766666665543 33344433333322 136778888888
Q ss_pred HHhhcCCchhhHHhhhc
Q 043311 240 IDKRGQGFRGVINILFG 256 (257)
Q Consensus 240 ~~~~~~g~~~~~~~l~~ 256 (257)
..|...|..++|.++|+
T Consensus 310 d~~~~~~~~~~a~~~~~ 326 (349)
T 3q7a_A 310 DSFIEQNRVDDAAKVFE 326 (349)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHH
Confidence 88998898888887764
No 211
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=94.04 E-value=0.4 Score=34.26 Aligned_cols=119 Identities=14% Similarity=0.023 Sum_probs=75.2
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043311 98 SKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ----------GKEALRVFMRMLASGVAPNAYTYAVLIKGL 167 (257)
Q Consensus 98 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~ 167 (257)
.+.+.+++|.+.++...+.. +-+...|+.+=.++...++ +++|...|++-.+.+ +-+...|..+=.+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 34455677777777766542 2255666666666666554 458888888887753 22567788888888
Q ss_pred HhccCC------cchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 043311 168 AAAADG------NAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK 226 (257)
Q Consensus 168 ~~~~~~------~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 226 (257)
.+.|.. ..|++++|.+.|+...+ +.|+...|.-.+.. .+++-+++-+....
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~------~~ka~el~~~~~~~ 147 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM------TAKAPQLHAEAYKQ 147 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH------HHTHHHHHHHHHHS
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHH------HHhCHhccCccccc
Confidence 764310 01469999999998876 46887777655553 34455555554444
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=93.98 E-value=1.1 Score=36.68 Aligned_cols=61 Identities=8% Similarity=-0.184 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 194 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
..+...|.++--.+...|++++|...+++....+ |+...|..+=..+.-.|+.+.|...|+
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~ 334 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYL 334 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3455566666555555677777777777776654 565555444555666677666665553
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=93.56 E-value=0.82 Score=28.77 Aligned_cols=59 Identities=19% Similarity=0.164 Sum_probs=47.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVV-AHTAVIEAYASAGQGKEALRVFMRMLASG 152 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g 152 (257)
.-..+.+.|++++|.+.|+...+.. +-+.. .|..+-.+|...|++++|...|++..+.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4456788899999999999887752 22456 78888888999999999999999988753
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=93.50 E-value=0.84 Score=28.72 Aligned_cols=53 Identities=13% Similarity=0.172 Sum_probs=25.2
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCC-CHH-HHHHHHHHHHhccCCcchhHHHHHHHHHHHHh
Q 043311 131 AYASAGQGKEALRVFMRMLASGVAP-NAY-TYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190 (257)
Q Consensus 131 ~~~~~~~~~~a~~~~~~m~~~g~~~-~~~-t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~ 190 (257)
.+.+.|++++|...|++..+. .| +.. .|..+-..+...| ++++|.+.|+...+
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~-----~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLG-----DWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHT-----CHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHh
Confidence 344455555555555555542 33 334 4444444444422 25555555555443
No 215
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.45 E-value=1 Score=29.43 Aligned_cols=45 Identities=11% Similarity=0.153 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHH
Q 043311 140 EALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189 (257)
Q Consensus 140 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~ 189 (257)
+..+-++.+....+.|+.....+.+++|-+.+| +..|.++|+.++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND-----~alAVR~lE~iK 72 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLND-----FASAVRILEVVK 72 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhh-----HHHHHHHHHHHH
Confidence 344444444444555555555555555555333 555555555444
No 216
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=93.09 E-value=4.1 Score=35.49 Aligned_cols=141 Identities=12% Similarity=0.012 Sum_probs=102.3
Q ss_pred HHHhcCC-hHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043311 96 ALSKDGL-THEALQLFAQIKDKGHMPD-VVAHTAVIEAYASAGQ----------GKEALRVFMRMLASGVAPNAYTYAVL 163 (257)
Q Consensus 96 ~~~~~~~-~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~g~~~~~~t~~~l 163 (257)
.+.+.|. .++|++.++.+.+. .|+ ...|+.-=.++.+.|+ +++++..++.+.+.+- -+...|+--
T Consensus 37 ~~~~~~~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p-K~y~aW~hR 113 (567)
T 1dce_A 37 QKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHR 113 (567)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 3334444 46789999998874 354 4567665555555555 8999999999998753 388889888
Q ss_pred HHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 043311 164 IKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ-KVDEARGLLQQMKAKGFVPDEKAVKEALIDK 242 (257)
Q Consensus 164 l~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 242 (257)
-..+.+.+.. .++++.++++.+.+.. +-+...|+.---...+.| .++++.+.++++.+... -|...|...-..+
T Consensus 114 ~w~l~~l~~~---~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll 188 (567)
T 1dce_A 114 CWLLSRLPEP---NWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLL 188 (567)
T ss_dssp HHHHHTCSSC---CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHH
T ss_pred HHHHHHcccc---cHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHH
Confidence 8888775521 3899999999998753 237778888777777888 89999999999987653 3666776665554
Q ss_pred hc
Q 043311 243 RG 244 (257)
Q Consensus 243 ~~ 244 (257)
.+
T Consensus 189 ~~ 190 (567)
T 1dce_A 189 PQ 190 (567)
T ss_dssp HH
T ss_pred Hh
Confidence 44
No 217
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=92.72 E-value=0.73 Score=30.08 Aligned_cols=65 Identities=15% Similarity=0.162 Sum_probs=52.2
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043311 102 LTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167 (257)
Q Consensus 102 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~ 167 (257)
+.-+..+-++.+......|++.+..+.+++|.+-+|+..|.++|+-.+.+ +.....+|..+++-.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqEl 89 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 89 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHHH
Confidence 45567777888888889999999999999999999999999999988855 233345687777744
No 218
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=92.70 E-value=3.1 Score=33.10 Aligned_cols=166 Identities=10% Similarity=0.004 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHhCCCCCcHHH----HHHHHHhcC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----Hhc---CC
Q 043311 71 PRNLQEIFHKMRTEGLTNNAVK----MFDALSKDG--LTHEALQLFAQIKDKGHMPDVVAHTAVIEAY----ASA---GQ 137 (257)
Q Consensus 71 ~~~a~~~~~~m~~~~~~p~~~~----ll~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~----~~~---~~ 137 (257)
.++|+.+++.+... .|+..+ =-.++...| +++++++.++.+..... -+..+|+---..+ ... ++
T Consensus 49 s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 49 SERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp SHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhccccCC
Confidence 35677777777764 333322 122334556 89999999999987521 2345566554444 445 78
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC---
Q 043311 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILG--DAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK--- 212 (257)
Q Consensus 138 ~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~--~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~--- 212 (257)
+++++.+++.+.+.. +-|...|+---..+.+.+. ++ ++.++++.+.+... -|...|+---....+.+.
T Consensus 126 ~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~-----~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 126 PYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDL-----HNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp THHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-----TTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCC
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcc-----cChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccch
Confidence 999999999999875 4488899887777777554 55 88888888886533 266777766555556665
Q ss_pred ---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCc
Q 043311 213 ---VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGF 247 (257)
Q Consensus 213 ---~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 247 (257)
++++++.++++..... -|...|...-..+...|.
T Consensus 199 ~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDR 235 (306)
T ss_dssp HHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTC
T ss_pred hhhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCC
Confidence 8999999999988653 367777776666666555
No 219
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=92.22 E-value=1.6 Score=30.12 Aligned_cols=60 Identities=15% Similarity=0.228 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043311 140 EALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFE 205 (257)
Q Consensus 140 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 205 (257)
+..+-++.+...++.|+.....+.+++|-+.+| +..|..+|+.++.. ..+....|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvND-----falAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLND-----FASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 445555555556666666666666666666444 66666666665532 1223334544443
No 220
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.08 E-value=0.7 Score=38.26 Aligned_cols=54 Identities=19% Similarity=0.180 Sum_probs=25.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043311 94 FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRM 148 (257)
Q Consensus 94 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 148 (257)
+..+...|+.+++...+..+... -+.+-..|..+|.+|.+.|+..+|++.|+.+
T Consensus 178 ~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 178 AEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33444455555555444444332 1223445555555555555555555555444
No 221
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=92.03 E-value=0.94 Score=29.39 Aligned_cols=60 Identities=12% Similarity=-0.014 Sum_probs=43.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKG------HMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g------~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 151 (257)
.|-..+.+.|+++.|...|+...+.- -.+...++..+-.+|.+.|+++.|...+++..+.
T Consensus 10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 46667778888888888877765431 1234567788888888888888888888887763
No 222
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=91.56 E-value=2.3 Score=29.01 Aligned_cols=87 Identities=14% Similarity=0.043 Sum_probs=54.5
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCC-CHHHH-HHHHHHHHHcCCH
Q 043311 136 GQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP-NAGTY-TAVFEAFVRAQKV 213 (257)
Q Consensus 136 ~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~-~~li~~~~~~~~~ 213 (257)
..+..+.+-|.+-...|. ++..+-..+-.++.+..+ .....++..+++++...+ .| ...-| =.|--++.+.|++
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~--~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRY--NDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSS--HHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhH
Confidence 344555555555555443 666666667777777555 445666788888877653 12 22222 2344567888888
Q ss_pred HHHHHHHHHHHHC
Q 043311 214 DEARGLLQQMKAK 226 (257)
Q Consensus 214 ~~a~~~~~~m~~~ 226 (257)
++|.++++.+.+.
T Consensus 91 ~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 91 EKALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8888888888773
No 223
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=90.98 E-value=5.3 Score=32.19 Aligned_cols=157 Identities=8% Similarity=-0.055 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHhCCCCCc-HH-HHHHHHHhcC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHH
Q 043311 71 PRNLQEIFHKMRTEGLTNN-AV-KMFDALSKDG--LTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ-GKEALRVF 145 (257)
Q Consensus 71 ~~~a~~~~~~m~~~~~~p~-~~-~ll~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~-~~~a~~~~ 145 (257)
+++++.+++.+........ .. .=--++.+.+ .+++++.+++.+.+.. +-|-..|+----++...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 5778888888887543222 21 1112223445 5899999999998752 3467788888888888888 59999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhccC---------CcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc------
Q 043311 146 MRMLASGVAPNAYTYAVLIKGLAAAAD---------GNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA------ 210 (257)
Q Consensus 146 ~~m~~~g~~~~~~t~~~ll~~~~~~~~---------~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~------ 210 (257)
+.+.+.+. -|...|+..-..+.+..+ ...+.++++.+.+....... +-|...|+-+-..+.+.
T Consensus 169 ~~~I~~~p-~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHCS-CCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHCC-CCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCcccc
Confidence 99998764 478888877666665421 11256888888888876531 33667777554444444
Q ss_pred -----CCHHHHHHHHHHHHHCCCCCCH
Q 043311 211 -----QKVDEARGLLQQMKAKGFVPDE 232 (257)
Q Consensus 211 -----~~~~~a~~~~~~m~~~g~~p~~ 232 (257)
+.++++.+.++++.+. .||.
T Consensus 247 ~~~~~~~l~~el~~~~elle~--~pd~ 271 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQEL--EPEN 271 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred chHHHHHHHHHHHHHHHHHhh--Cccc
Confidence 4688999999999874 4553
No 224
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=90.16 E-value=2.2 Score=29.42 Aligned_cols=65 Identities=15% Similarity=0.162 Sum_probs=51.9
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043311 102 LTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167 (257)
Q Consensus 102 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~ 167 (257)
|.-+..+-++.+....+.|++.+..+.+++|.+-+|+..|.++|+-.+.+ ..+....|..+++-.
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqEl 132 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 132 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHHH
Confidence 44456677777778888999999999999999999999999999988865 344455687777744
No 225
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=89.76 E-value=4 Score=28.85 Aligned_cols=116 Identities=14% Similarity=0.162 Sum_probs=65.7
Q ss_pred CHHHHHHHHHHHHhcCCh------HHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhccCCcchhHHHHHHHHHHHHh
Q 043311 121 DVVAHTAVIEAYASAGQG------KEALRVFMRMLASGVAPNA----YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190 (257)
Q Consensus 121 ~~~~~~~li~~~~~~~~~------~~a~~~~~~m~~~g~~~~~----~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~ 190 (257)
|..+|=..|...-+.|+. +...++|++-... ++|+. .-|.-+.=-|+.... .+..++|.++|+.+.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~e--i~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKA--IQEPDDARDYFQMARA 88 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHH--HHCGGGCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHH
Confidence 455666666666666666 6666666655543 44432 112211111211111 2236777778877764
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043311 191 KGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241 (257)
Q Consensus 191 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 241 (257)
.+-+- ...|-..-.--.+.|+++.|.+++.+....+-.|. ..+.+.|..
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~-~~le~a~~n 137 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL-EMLEIALRN 137 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH-HHHHHHHHH
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH-HHHHHHHHh
Confidence 32222 44555555555678999999999999888876655 455555554
No 226
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=89.55 E-value=4.6 Score=29.28 Aligned_cols=134 Identities=13% Similarity=0.159 Sum_probs=89.9
Q ss_pred CCcHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043311 87 TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKG 166 (257)
Q Consensus 87 ~p~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~ 166 (257)
..|..+=.....+.|+++.|.++.+++ -+...|..|=......|+++-|.+.|..... |..+.-.
T Consensus 5 ~~D~~~rF~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~L 69 (177)
T 3mkq_B 5 VQDPHIRFDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFL 69 (177)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHH
T ss_pred cCChHHHHHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHH
Confidence 344445566778899999999998765 3788999999999999999999999988762 3344444
Q ss_pred HHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 043311 167 LAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246 (257)
Q Consensus 167 ~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 246 (257)
|...|+ .+...++-+.-...| -+|.....+.-.|+++++.++|.+ .|-.|-...+ ....|
T Consensus 70 y~~tg~-----~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~---~~r~~eA~~~------A~t~g 129 (177)
T 3mkq_B 70 YLVTGD-----VNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE---GGSLPLAYAV------AKANG 129 (177)
T ss_dssp HHHHTC-----HHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH---TTCHHHHHHH------HHHTT
T ss_pred HHHhCC-----HHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH---CCChHHHHHH------HHHcC
Confidence 555444 444444433333222 366777778889999999999855 3433332222 22356
Q ss_pred chhhHHhhh
Q 043311 247 FRGVINILF 255 (257)
Q Consensus 247 ~~~~~~~l~ 255 (257)
..+.++++.
T Consensus 130 ~~~~a~~~~ 138 (177)
T 3mkq_B 130 DEAAASAFL 138 (177)
T ss_dssp CHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 666666553
No 227
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=89.51 E-value=4 Score=28.45 Aligned_cols=138 Identities=12% Similarity=-0.018 Sum_probs=85.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 043311 68 PTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMR 147 (257)
Q Consensus 68 ~~~~~~a~~~~~~m~~~~~~p~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 147 (257)
.|..++..++..+.....-....+=+|--..-.-+-+-..++++...+. -|.. .+|++.....-+-.
T Consensus 20 dG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis----------~C~NlKrVi~C~~~ 86 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLD----------KCQNLKSVVECGVI 86 (172)
T ss_dssp TTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGG----------GCSCTHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhh---cCcH----------hhhcHHHHHHHHHH
Confidence 4666677777666665332222211333333334444445555554432 3332 34455555444433
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 043311 148 MLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKG 227 (257)
Q Consensus 148 m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 227 (257)
+ ..+...+...+..... .|.-+.-.+++.++.. +.+|+....-.+-.+|.+.|+..++.+++.+..+.|
T Consensus 87 ~-----n~~se~vd~ALd~lv~-----~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 87 N-----NTLNEHVNKALDILVI-----QGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp T-----TCCCHHHHHHHHHHHH-----TTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred h-----cchHHHHHHHHHHHHH-----hccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 3 2245566777778887 5557888888888644 356788888889999999999999999999999999
Q ss_pred CC
Q 043311 228 FV 229 (257)
Q Consensus 228 ~~ 229 (257)
++
T Consensus 156 ~k 157 (172)
T 1wy6_A 156 EK 157 (172)
T ss_dssp CH
T ss_pred hH
Confidence 74
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=89.47 E-value=4.2 Score=28.69 Aligned_cols=56 Identities=13% Similarity=0.036 Sum_probs=25.7
Q ss_pred HHHHHhcC---ChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043311 94 FDALSKDG---LTHEALQLFAQIKDKGHMP--DVVAHTAVIEAYASAGQGKEALRVFMRMLA 150 (257)
Q Consensus 94 l~~~~~~~---~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 150 (257)
--++++++ +++++..+|++..+.. .| +...+-.+=-+|.+.|++++|.+.++.+.+
T Consensus 39 a~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 39 AWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 33444444 3345555555555432 12 122222333334555555555555555554
No 229
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.14 E-value=2.3 Score=35.06 Aligned_cols=69 Identities=17% Similarity=0.151 Sum_probs=47.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHh-----CCCCCCHHH
Q 043311 125 HTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG-----KGMRPNAGT 199 (257)
Q Consensus 125 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~ 199 (257)
...++..+...|+.+++...+..+.... +.+...|..+|.++.+ .|+..+|.+.|+.+.. .|+.|...+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~-----~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYL-----SDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHT-----TTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 4456666777788888877777776542 5577788888888887 4447777777776653 477777655
No 230
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=88.96 E-value=3 Score=34.24 Aligned_cols=73 Identities=7% Similarity=-0.033 Sum_probs=42.9
Q ss_pred CCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 043311 154 APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK 233 (257)
Q Consensus 154 ~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 233 (257)
..+..+|.++.-.+...| +++.|...++.....+ |+...|..+=..+.-.|++++|.+.|++.... .|...
T Consensus 274 ~~~a~~~~alal~~l~~g-----d~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~ 344 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKG-----KTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGAN 344 (372)
T ss_dssp TTCHHHHHHHHHHHHHHT-----CHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHH
T ss_pred CcCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcC
Confidence 445566666555555423 3666666666665543 56666666666666666666666666665553 45555
Q ss_pred HH
Q 043311 234 AV 235 (257)
Q Consensus 234 t~ 235 (257)
||
T Consensus 345 t~ 346 (372)
T 3ly7_A 345 TL 346 (372)
T ss_dssp HH
T ss_pred hH
Confidence 54
No 231
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=88.80 E-value=0.39 Score=36.18 Aligned_cols=80 Identities=5% Similarity=-0.002 Sum_probs=38.1
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHH-----HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhc
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAV-----KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVA--HTAVIEAYASA 135 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-----~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~ 135 (257)
...+..|+.+.+..+++.+.+.|..++.. +.+...+..|+.+ +++.+.+.|..++... -.+.+...+..
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 89 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLACEH 89 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHHc
Confidence 34455677777766666665555444321 3444445556543 3334444554443221 11223333445
Q ss_pred CChHHHHHHHH
Q 043311 136 GQGKEALRVFM 146 (257)
Q Consensus 136 ~~~~~a~~~~~ 146 (257)
|+.+-+..+++
T Consensus 90 ~~~~~~~~Ll~ 100 (241)
T 1k1a_A 90 RSPTCLRALLD 100 (241)
T ss_dssp TCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 55544444433
No 232
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=87.73 E-value=6.3 Score=28.57 Aligned_cols=130 Identities=9% Similarity=0.032 Sum_probs=88.4
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEAL 142 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 142 (257)
....+.|+++.|.++.+.+ +....+..|-+...+.|+++-|.+.|..... |..+.-.|.-.|+.++..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l---~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL---NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh---CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 3456789999999997766 2233455799999999999999999998654 667777788899987766
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043311 143 RVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222 (257)
Q Consensus 143 ~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 222 (257)
.+-+.-...| -++.....+.-.|+ ++++.++|.+... -|.. .-.....|.-+.|.++.+.
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGd-----v~~~i~lL~~~~r---~~eA------~~~A~t~g~~~~a~~~~~~ 140 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNS-----TKERSSIFAEGGS---LPLA------YAVAKANGDEAAASAFLEQ 140 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTC-----HHHHHHHHHHTTC---HHHH------HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCC-----HHHHHHHHHHCCC---hHHH------HHHHHHcCcHHHHHHHHHH
Confidence 5554444443 24555555556444 9999998866432 1211 1112336778888888877
Q ss_pred HH
Q 043311 223 MK 224 (257)
Q Consensus 223 m~ 224 (257)
+.
T Consensus 141 ~~ 142 (177)
T 3mkq_B 141 AE 142 (177)
T ss_dssp TT
T ss_pred hC
Confidence 63
No 233
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.16 E-value=5.3 Score=33.41 Aligned_cols=119 Identities=9% Similarity=0.006 Sum_probs=77.4
Q ss_pred CCHHHHHHHHHHHHhCCCCC-----cHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHH
Q 043311 69 TDPRNLQEIFHKMRTEGLTN-----NAVKMFDALSKDGLTHEALQLFAQIKDKGHMP--DVVAHTAVIEAYASAGQGKEA 141 (257)
Q Consensus 69 ~~~~~a~~~~~~m~~~~~~p-----~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~~~~~~a 141 (257)
...+...+......+..... ....+-..|.+.|+.+.|.++|.++......+ -+..|-..|+.+...+++..+
T Consensus 108 ~~l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~ 187 (429)
T 4b4t_R 108 SKIKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYV 187 (429)
T ss_dssp CCHHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHH
Confidence 34555555555555533221 22358899999999999999999998764333 356788899999999999999
Q ss_pred HHHHHHHHHC---CCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHh
Q 043311 142 LRVFMRMLAS---GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190 (257)
Q Consensus 142 ~~~~~~m~~~---g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~ 190 (257)
...+.+.... +-.++... -++.|.-.-....+.+..|.+.|-+...
T Consensus 188 ~~~~~ka~~~~~~~~d~~~~~---~lk~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 188 KEKLEAVNSMIEKGGDWERRN---RYKTYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHHHHHHHTTCCCTHHHH---HHHHHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcCCCHHHHH---HHHHHHHHHHHHhChHHHHHHHHHHHhc
Confidence 9999887632 33333322 2222222111224558888877776553
No 234
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=86.95 E-value=4.4 Score=26.01 Aligned_cols=48 Identities=8% Similarity=0.065 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043311 178 LGDAQKYLMEMVGK------GMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKA 225 (257)
Q Consensus 178 ~~~a~~~~~~m~~~------g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 225 (257)
+..|...|+...+. +-.+....+..|-.++.+.|+++.|..++++...
T Consensus 21 y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 21 YYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 55555555544321 0112334566666666666666666666666654
No 235
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=86.09 E-value=11 Score=29.83 Aligned_cols=115 Identities=13% Similarity=0.004 Sum_probs=79.9
Q ss_pred HHHHHHHHHHH-Hhc--CC------hHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhccCCcchhHHHHHHHHHHHH
Q 043311 122 VVAHTAVIEAY-ASA--GQ------GKEALRVFMRMLASGVAPN---AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV 189 (257)
Q Consensus 122 ~~~~~~li~~~-~~~--~~------~~~a~~~~~~m~~~g~~~~---~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~ 189 (257)
...|..++.+- ... |+ ...|...+++..+ +.|+ -..|..+-..|...-..-.|..++|.++|++-.
T Consensus 154 ~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL 231 (301)
T 3u64_A 154 TLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLT 231 (301)
T ss_dssp HHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHH
Confidence 45677766643 332 43 3566666666665 4566 467888888888853222345999999999988
Q ss_pred hCCCCCC--HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCC--CCHHHHHHHHH
Q 043311 190 GKGMRPN--AGTYTAVFEAFVRA-QKVDEARGLLQQMKAKGFV--PDEKAVKEALI 240 (257)
Q Consensus 190 ~~g~~p~--~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~--p~~~t~~~ll~ 240 (257)
+ +.|+ ..++...-+.++.. |+.+.+.+++++....... |+....+.+-+
T Consensus 232 ~--LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~~q 285 (301)
T 3u64_A 232 R--YCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVILSQ 285 (301)
T ss_dssp H--HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHHHH
T ss_pred H--hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHHHH
Confidence 6 3563 66777777888884 9999999999999998777 77655554433
No 236
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=85.04 E-value=14 Score=29.97 Aligned_cols=174 Identities=9% Similarity=-0.034 Sum_probs=112.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCcHHH----HHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-C-ChH
Q 043311 67 EPTDPRNLQEIFHKMRTEGLTNNAVK----MFDALSKDG-LTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASA-G-QGK 139 (257)
Q Consensus 67 ~~~~~~~a~~~~~~m~~~~~~p~~~~----ll~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-~-~~~ 139 (257)
+.+..++|+++++.+...+ |+..+ --..+...| .+++++++++.+.+.. +-+..+|+---..+.+. + +++
T Consensus 66 ~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCH
T ss_pred hCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChH
Confidence 3344456666666666542 32221 112233456 5999999999998753 23567888877777776 6 889
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCc---chhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----
Q 043311 140 EALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGN---AKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQK---- 212 (257)
Q Consensus 140 ~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~---- 212 (257)
+++++++.+.+.. +-|...|+---..+.+.+..+ ...++++.+.++.+.+... -|...|+---..+.+.+.
T Consensus 143 ~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 143 SEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccccc
Confidence 9999999999775 347888886555555533211 2234488888888876532 377778877777777665
Q ss_pred ---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 043311 213 ---VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246 (257)
Q Consensus 213 ---~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 246 (257)
++++++++++..... .-|...|..+-..+.+.|
T Consensus 221 ~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~ 256 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFS 256 (349)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 788999998888753 236666665444444433
No 237
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=84.48 E-value=6.4 Score=25.59 Aligned_cols=85 Identities=19% Similarity=0.170 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCcHHHHHH--HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 043311 69 TDPRNLQEIFHKMRTEGLTNNAVKMFD--ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFM 146 (257)
Q Consensus 69 ~~~~~a~~~~~~m~~~~~~p~~~~ll~--~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 146 (257)
...++|..|-+.+...+. ...+++|+ .+...|++++|..+.+.+. .||...|-+|- -.+.|-.+++...+.
T Consensus 20 H~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ-DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALC--EWHLGLGAALDRRLA 92 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHH--HHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHHH
Confidence 345666666666666555 44445544 3456667777666554443 46666666553 245666666666666
Q ss_pred HHHHCCCCCCHHHHH
Q 043311 147 RMLASGVAPNAYTYA 161 (257)
Q Consensus 147 ~m~~~g~~~~~~t~~ 161 (257)
+|..+| .|....|.
T Consensus 93 ~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 93 GLGGSS-DPALADFA 106 (115)
T ss_dssp HHHTCS-SHHHHHHH
T ss_pred HHHhCC-CHHHHHHH
Confidence 666655 33444443
No 238
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=84.35 E-value=5.9 Score=25.05 Aligned_cols=68 Identities=10% Similarity=0.039 Sum_probs=41.5
Q ss_pred CCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 043311 155 PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN-AGTYTAVFEAFVRAQKVDEARGLLQQMKAK 226 (257)
Q Consensus 155 ~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 226 (257)
.|...+..+-.++...++ ....+++..+|++..+. .|+ ......+-..+.+.|++++|...|+++.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~--~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHK--QAMTDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTT--TCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 455556666666654333 22356777777776653 343 344555556677777888888888777765
No 239
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=84.13 E-value=6.7 Score=25.54 Aligned_cols=85 Identities=22% Similarity=0.239 Sum_probs=45.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCcHHHHHH--HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 043311 69 TDPRNLQEIFHKMRTEGLTNNAVKMFD--ALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFM 146 (257)
Q Consensus 69 ~~~~~a~~~~~~m~~~~~~p~~~~ll~--~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 146 (257)
...++|..|-+.+...+. ...+++|+ .+...|++++|..+.+.+. .||...|-+|-. .+.|-.+++...+.
T Consensus 21 H~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE-EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 345566666666666555 34444544 3445666666666554443 466666655532 45565555555555
Q ss_pred HHHHCCCCCCHHHHH
Q 043311 147 RMLASGVAPNAYTYA 161 (257)
Q Consensus 147 ~m~~~g~~~~~~t~~ 161 (257)
+|..+| .|....|.
T Consensus 94 ~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 94 RLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHTTCC-CHHHHHHH
T ss_pred HHHhCC-CHHHHHHH
Confidence 665554 33333333
No 240
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=82.27 E-value=9 Score=26.01 Aligned_cols=81 Identities=12% Similarity=0.101 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH---HHHHHHHHHHCCCCC-CH-HHHHHHHHHHHhccCCcchh
Q 043311 103 THEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE---ALRVFMRMLASGVAP-NA-YTYAVLIKGLAAAADGNAKI 177 (257)
Q Consensus 103 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~---a~~~~~~m~~~g~~~-~~-~t~~~ll~~~~~~~~~~~~~ 177 (257)
...+.+-|....+.|. ++..+--.+-.++.++.+... +..+++++.+.+ .| +. ...-.+--++.+.|+
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~----- 89 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKE----- 89 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhh-----
Confidence 3444444544444333 444444444455555554433 666666666543 12 22 222223334556444
Q ss_pred HHHHHHHHHHHHh
Q 043311 178 LGDAQKYLMEMVG 190 (257)
Q Consensus 178 ~~~a~~~~~~m~~ 190 (257)
++.|.+.++.+.+
T Consensus 90 Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 90 YEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777777665
No 241
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.02 E-value=13 Score=31.32 Aligned_cols=153 Identities=13% Similarity=0.073 Sum_probs=84.7
Q ss_pred CCHHHHHHHHHHHHhCC----CCCc-H---HHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHH--HHHHHHHHHhcCC
Q 043311 69 TDPRNLQEIFHKMRTEG----LTNN-A---VKMFDALSKDGLTHEALQLFAQIKDK-GHMPDVVA--HTAVIEAYASAGQ 137 (257)
Q Consensus 69 ~~~~~a~~~~~~m~~~~----~~p~-~---~~ll~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~--~~~li~~~~~~~~ 137 (257)
|+++.|.+.+-.+.+.. -.++ . ..++..|.+.|+|+...+.+..+.+. |..+...+ -+.++.-......
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 77888888877666521 1111 1 24888888889998887777766543 43333222 1223333333333
Q ss_pred hHH--HHHHHHHHHH--CC-CCC---CHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHh--CCCCCC---HHHHHHHH
Q 043311 138 GKE--ALRVFMRMLA--SG-VAP---NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG--KGMRPN---AGTYTAVF 204 (257)
Q Consensus 138 ~~~--a~~~~~~m~~--~g-~~~---~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~--~g~~p~---~~~~~~li 204 (257)
.+. -..+.+.... .| +-. .......|.+.+.. .|.+.+|..+++++.. .|.... ...|..-+
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~-----~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~ 184 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKE-----EGKIDEAADILCELQVETYGSMEMSEKIQFILEQM 184 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHH-----HTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH-----ccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 322 1111111110 11 222 22344556666677 4448888888888763 232222 23566677
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC
Q 043311 205 EAFVRAQKVDEARGLLQQMKAK 226 (257)
Q Consensus 205 ~~~~~~~~~~~a~~~~~~m~~~ 226 (257)
+.|...+++..|..++.+....
T Consensus 185 rl~l~~~d~~~a~~~~~ki~~~ 206 (445)
T 4b4t_P 185 ELSILKGDYSQATVLSRKILKK 206 (445)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh
Confidence 7888888888888888877554
No 242
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=81.92 E-value=6.4 Score=27.35 Aligned_cols=63 Identities=11% Similarity=0.159 Sum_probs=47.4
Q ss_pred HHHHHHhCCCCCcHH--HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 043311 77 IFHKMRTEGLTNNAV--KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGK 139 (257)
Q Consensus 77 ~~~~m~~~~~~p~~~--~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 139 (257)
+-+.+.+.|+..+.. .++..+...+..-.|.++++.+.+.+...+..|-..-|+.+...|-+.
T Consensus 9 ~~~~l~~~g~r~T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 9 ALETLKETGVRITPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 334566788777755 588888877777778999999988877777877777788888887543
No 243
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=81.01 E-value=5.9 Score=27.76 Aligned_cols=64 Identities=11% Similarity=0.191 Sum_probs=47.0
Q ss_pred HHHHHHHhCCCCCcHH--HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 043311 76 EIFHKMRTEGLTNNAV--KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGK 139 (257)
Q Consensus 76 ~~~~~m~~~~~~p~~~--~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 139 (257)
++-+.+.+.|+.++.. .++..+...+..-.|.++++.+.+.+...+..|.-..|..+...|-+.
T Consensus 13 ~~~~~l~~~g~r~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 13 RLRMSIKKNGLKNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHHHHCC--CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 3445566788877765 588888877777789999999988877778877777788888887543
No 244
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=80.06 E-value=16 Score=27.01 Aligned_cols=69 Identities=17% Similarity=0.280 Sum_probs=50.5
Q ss_pred HHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCC
Q 043311 125 HTAVIEAYAS---AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194 (257)
Q Consensus 125 ~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~ 194 (257)
+--+|+++.| ..|.+.|+-++-+|.+.| .|.-..=-.++-+....|..+-.-+..|...++..+.-|.+
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3445666655 468899999999999998 77777777777777777765555677777777777766653
No 245
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=79.44 E-value=14 Score=26.10 Aligned_cols=106 Identities=11% Similarity=0.112 Sum_probs=65.4
Q ss_pred HHHHHHhcCCh------HHHHHHHHHHHhCCCCCCHH-HHHHHHHH------HHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 043311 93 MFDALSKDGLT------HEALQLFAQIKDKGHMPDVV-AHTAVIEA------YASAGQGKEALRVFMRMLASGVAPNAYT 159 (257)
Q Consensus 93 ll~~~~~~~~~------~~a~~~~~~m~~~g~~p~~~-~~~~li~~------~~~~~~~~~a~~~~~~m~~~g~~~~~~t 159 (257)
.++..-+.|++ ++..++|+..... ++|+.. .|..-|.. +...+|+++|.++|+.+.+.+-+. ...
T Consensus 19 yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~hKkF-AKi 96 (161)
T 4h7y_A 19 LLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANCKKF-AFV 96 (161)
T ss_dssp HHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHCTTB-HHH
T ss_pred HHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhHHH-HHH
Confidence 44444444555 6677777766653 455421 12111111 123479999999999997654444 777
Q ss_pred HHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043311 160 YAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEA 206 (257)
Q Consensus 160 ~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 206 (257)
|...-+-=.+ .|++..|.+++..-...+-+ +.....+.|+-
T Consensus 97 wi~~AqFEiR-----qgnl~kARkILg~AiG~~~k-~~~~le~a~~n 137 (161)
T 4h7y_A 97 HISFAQFELS-----QGNVKKSKQLLQKAVERGAV-PLEMLEIALRN 137 (161)
T ss_dssp HHHHHHHHHH-----TTCHHHHHHHHHHHHHTTCB-CHHHHHHHHHH
T ss_pred HHHHHHHHHH-----cccHHHHHHHHHHHhccCCC-cHHHHHHHHHh
Confidence 7777776677 45599999999988876544 34455555543
No 246
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=79.35 E-value=21 Score=28.17 Aligned_cols=96 Identities=14% Similarity=0.129 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcc
Q 043311 104 HEALQLFAQIKDKGHMPD---VVAHTAVIEAYAS-----AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNA 175 (257)
Q Consensus 104 ~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~ 175 (257)
..|...+++..+ +.|+ -..|..+-..|.+ -|+.++|.+.|++-.+-+-.-+..++...-+.++.. .
T Consensus 180 ~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~----~ 253 (301)
T 3u64_A 180 HAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIP----L 253 (301)
T ss_dssp HHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTT----T
T ss_pred HHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHh----c
Confidence 445555555555 3455 4588899999999 499999999999988753222477777788888772 1
Q ss_pred hhHHHHHHHHHHHHhCCCC--CCHHHHHHHHH
Q 043311 176 KILGDAQKYLMEMVGKGMR--PNAGTYTAVFE 205 (257)
Q Consensus 176 ~~~~~a~~~~~~m~~~g~~--p~~~~~~~li~ 205 (257)
|..+.+.+.+++....... |+....|.+-+
T Consensus 254 gd~~~a~~~L~kAL~a~p~~~P~~~lan~~~q 285 (301)
T 3u64_A 254 NNRAGFDEALDRALAIDPESVPHNKLLVILSQ 285 (301)
T ss_dssp TCHHHHHHHHHHHHHCCGGGCSSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCChhHHHHHHH
Confidence 3389999999999887666 77666665544
No 247
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=79.27 E-value=2.5 Score=31.55 Aligned_cols=61 Identities=11% Similarity=0.133 Sum_probs=38.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVA--HTAVIEAYASAGQGKEALRVFMRMLASGVAPN 156 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~ 156 (257)
+.+...++.|+.+.+..+++.+.+.|..++... -.+.+...+..|+.+ +++.+.+.|..++
T Consensus 11 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~ 73 (241)
T 1k1a_A 11 TPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPM 73 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTT
T ss_pred cHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCcc
Confidence 355666778999998888888877776655432 223444455667664 4455555665543
No 248
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=78.99 E-value=11 Score=24.53 Aligned_cols=30 Identities=23% Similarity=0.169 Sum_probs=14.3
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043311 132 YASAGQGKEALRVFMRMLASGVAPNAYTYAVLIK 165 (257)
Q Consensus 132 ~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~ 165 (257)
+.+.|++++|..+.+.+. -||...|.++..
T Consensus 49 LmNrG~Yq~Al~l~~~~c----~pdlepw~ALce 78 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGNP----WPALEPWFALCE 78 (115)
T ss_dssp HHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH
T ss_pred HHcchhHHHHHHhcCCCC----CchHHHHHHHHH
Confidence 444555555544443332 455555554443
No 249
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=78.67 E-value=7 Score=26.78 Aligned_cols=60 Identities=17% Similarity=0.268 Sum_probs=45.7
Q ss_pred HHHhCCCCCcHH--HHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 043311 80 KMRTEGLTNNAV--KMFDALSKDG-LTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGK 139 (257)
Q Consensus 80 ~m~~~~~~p~~~--~ll~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 139 (257)
.+.+.|+..+.. .++..+...+ ..-.|.++++.+.+.+...+..|-..-|+.+.+.|-+.
T Consensus 8 ~l~~~g~r~T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 8 ELRKAGLKVTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHCCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 466778777755 5888888766 66779999999998877778888777788888887554
No 250
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=78.66 E-value=24 Score=28.33 Aligned_cols=161 Identities=10% Similarity=0.010 Sum_probs=108.9
Q ss_pred CCCHH-HHHHHHHHHHhCCCCCcHHH-------HHHHHHhcC-------ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043311 68 PTDPR-NLQEIFHKMRTEGLTNNAVK-------MFDALSKDG-------LTHEALQLFAQIKDKGHMPDVVAHTAVIEAY 132 (257)
Q Consensus 68 ~~~~~-~a~~~~~~m~~~~~~p~~~~-------ll~~~~~~~-------~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 132 (257)
.|++. +|+.+++.+...+ |+..+ ++..+.+.. .+++++.+++.+.... +-+..+|+---..+
T Consensus 42 ~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL 118 (331)
T 3dss_A 42 AGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 118 (331)
T ss_dssp TTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34443 6888888888743 43322 454444322 2567888888887642 23677888877778
Q ss_pred HhcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 043311 133 ASAG--QGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRA 210 (257)
Q Consensus 133 ~~~~--~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 210 (257)
.+.+ ++++++.+++.+.+.. +-|...|+---..+...+. .++++.+.++.+.+.. +-|...|+-.-..+.+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~----~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAV----APAEELAFTDSLITRN-FSNYSSWHYRSCLLPQL 192 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHH
T ss_pred hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCc----CHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHh
Confidence 7877 4899999999999876 4488888887777777433 1578888888888653 23667777666555554
Q ss_pred --------------CCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043311 211 --------------QKVDEARGLLQQMKAKGFVPDEKAVKEA 238 (257)
Q Consensus 211 --------------~~~~~a~~~~~~m~~~g~~p~~~t~~~l 238 (257)
+.++++.+++++..... +-|...|+.+
T Consensus 193 ~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~ 233 (331)
T 3dss_A 193 HPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYH 233 (331)
T ss_dssp SCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred hhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 45888999999888753 2355556543
No 251
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=78.28 E-value=19 Score=32.57 Aligned_cols=124 Identities=10% Similarity=0.071 Sum_probs=74.2
Q ss_pred HHHHHHhcCC-hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHC------CCCC-CHH-----
Q 043311 93 MFDALSKDGL-THEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ-GKEALRVFMRMLAS------GVAP-NAY----- 158 (257)
Q Consensus 93 ll~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~------g~~~-~~~----- 158 (257)
++..+.-.++ ++.|.++|+.+.+....-++.....+|..+...++ --+|.+++.+..+. ...+ +..
T Consensus 254 Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~ 333 (754)
T 4gns_B 254 LKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLM 333 (754)
T ss_dssp HHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHH
T ss_pred HHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccccc
Confidence 5666665666 57799999999886321122223344444443332 23455555444321 1111 111
Q ss_pred -----HHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 043311 159 -----TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQKVDEARGLLQQM 223 (257)
Q Consensus 159 -----t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m 223 (257)
....=.+-|.+ .|+++-|+++-+.-... .| +..+|-.|..+|.+.|+++.|+-.+.-+
T Consensus 334 ~~~~~LL~~Qa~FLl~-----K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 334 NCMSDLLNIQTNFLLN-----RGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred CcchHHHHHHHHHHhc-----cCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 11111223445 34489999988887653 45 4679999999999999999999988876
No 252
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=78.05 E-value=18 Score=26.61 Aligned_cols=68 Identities=16% Similarity=0.156 Sum_probs=49.0
Q ss_pred HHHHHHHHhc---CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCC
Q 043311 126 TAVIEAYASA---GQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM 193 (257)
Q Consensus 126 ~~li~~~~~~---~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~ 193 (257)
--+|+++.|+ .|.+.|+-++-+|.+.|-.|.-..=-.++-+....|..+-.-+..|...++..+.-|.
T Consensus 8 Yd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 78 (201)
T 3bge_A 8 YDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGA 78 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCC
Confidence 3456666553 6788888888888888877777777777777777776555557777777777766554
No 253
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=76.97 E-value=6.1 Score=27.47 Aligned_cols=61 Identities=8% Similarity=0.121 Sum_probs=45.8
Q ss_pred HHHHHhCCCCCcHH--HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 043311 78 FHKMRTEGLTNNAV--KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGK 139 (257)
Q Consensus 78 ~~~m~~~~~~p~~~--~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 139 (257)
-+.+.+.|+.++.. .++..+...+ .-.|.++++.+.+.+...+..|.-.-|..+...|-+.
T Consensus 7 ~~~L~~~g~r~T~qR~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 69 (145)
T 3eyy_A 7 KSDLRQRGYRLTPQRQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVS 69 (145)
T ss_dssp HHHHHTTTCCCCHHHHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHcCCCcCHHHHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEE
Confidence 34566678887765 5777777776 5679999999988877778877777778888887543
No 254
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=76.59 E-value=16 Score=25.10 Aligned_cols=75 Identities=8% Similarity=-0.024 Sum_probs=45.6
Q ss_pred CCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 043311 153 VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231 (257)
Q Consensus 153 ~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 231 (257)
-.|+..|--....++.+..+ .....++..+++++...+-.-.....=-|--|+.+.|++++|.++.+.+.+ +.|+
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~--~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~ 110 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTD--VNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 110 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSC--HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTT
T ss_pred CCCChhhHHHHHHHHHcCCC--HHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCC
Confidence 34566666666666666655 455667777777776543111122333445667778888888888887776 3454
No 255
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=75.23 E-value=13 Score=23.41 Aligned_cols=47 Identities=9% Similarity=0.027 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHh
Q 043311 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190 (257)
Q Consensus 138 ~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~ 190 (257)
.++|..+|++..+.. +-+......+-..+... |++++|...|+.+.+
T Consensus 25 ~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~-----g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 25 TDEVSLLLEQALQLE-PYNEAALSLIANDHFIS-----FRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHh
Confidence 355555555554432 22334444444444442 225555555555544
No 256
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=75.01 E-value=22 Score=26.25 Aligned_cols=54 Identities=17% Similarity=0.034 Sum_probs=38.0
Q ss_pred ChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 043311 102 LTHEALQLFAQIKDKGHMPD-VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155 (257)
Q Consensus 102 ~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~ 155 (257)
...++.++|..|..+|+--. ...|...-..+...|++++|.++|+.=.+.+-+|
T Consensus 94 ~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 94 NFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp CHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 35677788888877776544 3456666677777788888888887766666565
No 257
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=74.85 E-value=7.9 Score=27.06 Aligned_cols=62 Identities=18% Similarity=0.278 Sum_probs=47.2
Q ss_pred HHHHHhCCCCCcHH--HHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 043311 78 FHKMRTEGLTNNAV--KMFDALSKDG-LTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGK 139 (257)
Q Consensus 78 ~~~m~~~~~~p~~~--~ll~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 139 (257)
.+.+.+.|+.++.. .++..+...+ ..-.|.++++.+.+.+...+..|...-|..+...|-+.
T Consensus 5 ~~~l~~~g~r~T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 5 NQALKDAGLKVTLPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 34566788777765 5788887766 66679999999998877778888777888888888653
No 258
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=74.23 E-value=9.2 Score=27.16 Aligned_cols=70 Identities=16% Similarity=0.150 Sum_probs=51.3
Q ss_pred HHHHHHHHH-HHHhCCCCCcHH--HHHHHHHhcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHH
Q 043311 71 PRNLQEIFH-KMRTEGLTNNAV--KMFDALSKDGLTHEALQLFAQIKDK--GHMPDVVAHTAVIEAYASAGQGKE 140 (257)
Q Consensus 71 ~~~a~~~~~-~m~~~~~~p~~~--~ll~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~~~~~~ 140 (257)
.+.+.+-+. .+.+.|+..+.. .++..+...+..-.|.++++.+.+. +...+..|--.-|..+...|-+.+
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~ 87 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTKQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTS 87 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 455555554 445578877765 5888888887778899999999887 667777777777788888886543
No 259
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=73.87 E-value=6 Score=30.69 Aligned_cols=26 Identities=8% Similarity=0.096 Sum_probs=12.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 043311 205 EAFVRAQKVDEARGLLQQMKAKGFVPDEKA 234 (257)
Q Consensus 205 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t 234 (257)
...+..|+.+ +++.+.+.|..|+...
T Consensus 200 ~~A~~~~~~~----~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 200 KLAIDNKDIE----MLQALFKYDINIYSAN 225 (285)
T ss_dssp HHHHHHTCHH----HHHHHTTSCBCSTTTT
T ss_pred HHHHHcCCHH----HHHHHHHcCCCCCCCC
Confidence 3334445533 3344445566665443
No 260
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=72.86 E-value=5.7 Score=29.40 Aligned_cols=72 Identities=8% Similarity=0.009 Sum_probs=41.6
Q ss_pred HHHHHHhCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---------CHHHHHHHHHHhhcCCchhhHH
Q 043311 184 YLMEMVGKGMRPNAGT--YTAVFEAFVRAQKVDEARGLLQQMKAKGFVP---------DEKAVKEALIDKRGQGFRGVIN 252 (257)
Q Consensus 184 ~~~~m~~~g~~p~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p---------~~~t~~~ll~~~~~~g~~~~~~ 252 (257)
+++.+.+.|..++... -.+.+...+..|+.+.+..+++.+.+.|..+ |..-.+. +......|..+.++
T Consensus 136 ~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tp-l~~A~~~g~~~~v~ 214 (232)
T 2rfa_A 136 IVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTP-FKLAGVEGNIVMFQ 214 (232)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCH-HHHHHHHTCHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCH-HHHHHHcCCHHHHH
Confidence 3444445565554321 2234555667888888888888888887643 2222222 33444567777766
Q ss_pred hhhc
Q 043311 253 ILFG 256 (257)
Q Consensus 253 ~l~~ 256 (257)
-+++
T Consensus 215 ~Ll~ 218 (232)
T 2rfa_A 215 HLMQ 218 (232)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6654
No 261
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=71.82 E-value=9.3 Score=23.31 Aligned_cols=64 Identities=13% Similarity=0.109 Sum_probs=47.6
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhh
Q 043311 186 MEMVGKGMRPNAGTYTAVFEAFVRAQ-KVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGV 250 (257)
Q Consensus 186 ~~m~~~g~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 250 (257)
+.|.+.|+..+..-. .++..+...+ ..-.+.++++.+.+.+...+..|....|..+...|....
T Consensus 6 ~~l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~ 70 (83)
T 2fu4_A 6 TALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTR 70 (83)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEE
Confidence 446678888776553 4556665554 566788899999888777888999999999888887643
No 262
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.51 E-value=45 Score=27.69 Aligned_cols=97 Identities=19% Similarity=0.116 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHh---CCCCCCH
Q 043311 123 VAHTAVIEAYASAGQGKEALRVFMRMLAS--GVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG---KGMRPNA 197 (257)
Q Consensus 123 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~---~g~~p~~ 197 (257)
.++..+-..|.+.|++++|.+.|.++... +..--...|-..|+.+...+| |..+...+..... .+-.|+.
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d-----~~~~~~~~~ka~~~~~~~~d~~~ 206 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYND-----QLYVKEKLEAVNSMIEKGGDWER 206 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHHTTCCCTHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcc-----HHHHHHHHHHHHHhhhcCCCHHH
Confidence 36777888999999999999999999865 344456788889999999666 8898888887753 3322332
Q ss_pred H----HHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 043311 198 G----TYTAVFEAFVRAQKVDEARGLLQQMKAK 226 (257)
Q Consensus 198 ~----~~~~li~~~~~~~~~~~a~~~~~~m~~~ 226 (257)
. .|..++ +...+++..|...|-+....
T Consensus 207 ~~~lk~~~gl~--~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 207 RNRYKTYYGIH--CLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHHHHHG--GGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHHhChHHHHHHHHHHHhcc
Confidence 2 122222 34568899999988876543
No 263
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=70.07 E-value=41 Score=27.06 Aligned_cols=133 Identities=17% Similarity=0.164 Sum_probs=73.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH----HHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKE----ALRVFMRMLASGVAPNAYTYAVLIKGL 167 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~----a~~~~~~m~~~g~~~~~~t~~~ll~~~ 167 (257)
|+..-|.+.+++++|.+++..--. .+.+.|+... +.-+++-+.+.++++|.....-++..+
T Consensus 40 Ti~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 40 LVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 466778888888888887543221 1333344332 333334445556666666666666666
Q ss_pred HhccCCcchhHHHHHHHHHHHH----hCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043311 168 AAAADGNAKILGDAQKYLMEMV----GKG--MRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALID 241 (257)
Q Consensus 168 ~~~~~~~~~~~~~a~~~~~~m~----~~g--~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 241 (257)
.........+ ..+++.+. +.| -.-|......+-..|.+.+++.+|+.-|= .|-.++..+|..++..
T Consensus 105 ~~~~~~~p~r----~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~e 176 (336)
T 3lpz_A 105 RLFQPGEPVR----KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYE 176 (336)
T ss_dssp TTSCTTCHHH----HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHH
T ss_pred HhCCCCCcHH----HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHH
Confidence 5544321111 11222222 122 22255666667788888888888777662 2444445677777766
Q ss_pred hhcCCc
Q 043311 242 KRGQGF 247 (257)
Q Consensus 242 ~~~~g~ 247 (257)
+...+.
T Consensus 177 w~~~~~ 182 (336)
T 3lpz_A 177 WYKQDE 182 (336)
T ss_dssp HHHTSC
T ss_pred HHHhcC
Confidence 655544
No 264
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=69.51 E-value=32 Score=25.58 Aligned_cols=71 Identities=18% Similarity=0.195 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhc---CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCC
Q 043311 124 AHTAVIEAYASA---GQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194 (257)
Q Consensus 124 ~~~~li~~~~~~---~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~ 194 (257)
.+--+|+++.|+ .|.+.|+-++-+|.+.|-.|.-..=-.++-+....|..+-.-+..|...++..+.-|.+
T Consensus 34 ~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 34 NHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 444566676654 68888888888888888887777777777777777765555577777777777766653
No 265
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=69.24 E-value=21 Score=23.27 Aligned_cols=76 Identities=13% Similarity=0.099 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHH
Q 043311 103 THEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQ 182 (257)
Q Consensus 103 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~ 182 (257)
-++|.-+-+.+...+. ...+--+-+..+.+.|++++|..+.+.+. -||...|.++... + .|..+++.
T Consensus 23 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--r-----lGl~s~le 89 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCEY--R-----LGLGSALE 89 (116)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHH--H-----HTCHHHHH
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--h-----cccHHHHH
Confidence 4555555555555432 12222222333555566666655554442 5566666555442 2 22344444
Q ss_pred HHHHHHHhC
Q 043311 183 KYLMEMVGK 191 (257)
Q Consensus 183 ~~~~~m~~~ 191 (257)
.-+..+...
T Consensus 90 ~rL~~la~s 98 (116)
T 2p58_C 90 SRLNRLARS 98 (116)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHhC
Confidence 444455544
No 266
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=69.12 E-value=67 Score=29.09 Aligned_cols=123 Identities=9% Similarity=-0.012 Sum_probs=72.9
Q ss_pred HHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHh------CCCCCCH
Q 043311 125 HTAVIEAYASAGQ-GKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG------KGMRPNA 197 (257)
Q Consensus 125 ~~~li~~~~~~~~-~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~------~g~~p~~ 197 (257)
-..++..+...++ .+.|.++|+++....-.-+..-...++..+...++ . --+|.+++.+..+ ....+..
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~---~-Ev~av~ll~~~l~~~~~~~~~l~~~~ 326 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIET---K-ELDMITILNETLDPLLSLLNDLPPRD 326 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGG---G-HHHHHHHHHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhh---h-hHHHHHHHHHHHHHhhhhhhhhcccc
Confidence 4556666666777 58899999999876322222222334443333222 1 2233333333221 1122211
Q ss_pred H-H---H---HHHH----HHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhcCCchhhHHh
Q 043311 198 G-T---Y---TAVF----EAFVRAQKVDEARGLLQQMKAKGFVP-DEKAVKEALIDKRGQGFRGVINI 253 (257)
Q Consensus 198 ~-~---~---~~li----~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~~~~ 253 (257)
. . . ..|+ +-+...|+++.|+++-++.... .| +-.||..|..+|...|+++.|.-
T Consensus 327 ~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALL 392 (754)
T 4gns_B 327 ADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALF 392 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHH
Confidence 1 0 1 1122 3355679999999999998764 45 57899999999999999999864
No 267
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=68.74 E-value=17 Score=22.07 Aligned_cols=58 Identities=19% Similarity=0.329 Sum_probs=33.3
Q ss_pred HHHhCCCCCcHH--HHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 043311 80 KMRTEGLTNNAV--KMFDALSKDG-LTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ 137 (257)
Q Consensus 80 ~m~~~~~~p~~~--~ll~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 137 (257)
.+.+.|+..+.. .++..+...+ ..-.+.++++.+.+.+...+..|-...|..+.+.|-
T Consensus 7 ~l~~~g~~~t~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 7 ALKKAGLKVTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHTTCCCCHHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 345556544433 4666655543 344566677777666555566666666666666654
No 268
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=68.09 E-value=28 Score=24.36 Aligned_cols=64 Identities=14% Similarity=0.127 Sum_probs=44.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCC
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ--GKEALRVFMRMLASGVAPN 156 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~~~ 156 (257)
.+|.-|...|+.++|.+.++++..-.+ -...++..+..++-+.++ .+.+..++..+...|+-+.
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 589999999999999999999863211 123445556666665432 4678888888887765533
No 269
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=68.02 E-value=25 Score=24.73 Aligned_cols=55 Identities=16% Similarity=0.194 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 043311 179 GDAQKYLMEMVGKGMRPNAG-TYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK 233 (257)
Q Consensus 179 ~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 233 (257)
++...+|..|...|+--... .|...-..+...|++.+|.++|+.-.+.+-+|-..
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 137 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREF 137 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 34788999999988866554 57888888889999999999999999999888643
No 270
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=67.38 E-value=28 Score=24.15 Aligned_cols=73 Identities=8% Similarity=-0.010 Sum_probs=46.6
Q ss_pred CCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 043311 154 APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTY-TAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231 (257)
Q Consensus 154 ~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~-~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 231 (257)
.|+..|--....++.+..+ .....++..+++++...+-. +..-| =.|--++.+.|++++|.++.+.+.+. .|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~--~~di~~GI~LLe~l~~~~~~-~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTD--VNDERLGVKILTDIYKEAES-RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSS--HHHHHHHHHHHHHHHHHCCS-THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCC
T ss_pred CCcHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHhcCcc-chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCC
Confidence 5666666666667777666 55567777777777653211 22222 23446777888888888888888773 454
No 271
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=67.28 E-value=77 Score=30.16 Aligned_cols=146 Identities=16% Similarity=0.103 Sum_probs=88.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC----------------
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP---------------- 155 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~---------------- 155 (257)
.++..+.+.+..+.+.++.....+ +...--.+=.+|...|++++|.+.|.+-.. |+..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~-----~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS-----DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC-----CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccc
Confidence 366777778888777765544332 333323344557888999999999966421 1111
Q ss_pred -------CHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHH-hCCCCC-C--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 043311 156 -------NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV-GKGMRP-N--AGTYTAVFEAFVRAQKVDEARGLLQQMK 224 (257)
Q Consensus 156 -------~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~-~~g~~p-~--~~~~~~li~~~~~~~~~~~a~~~~~~m~ 224 (257)
-..=|.-++..+.+. +..+.+.++-..-. ..+-.+ + ...|..++.++...|++++|...+-.+.
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~-----~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~p 965 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEE-----SAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLS 965 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHT-----SCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCC
Confidence 112245556666663 33555555443322 222111 1 1258889999999999999999998888
Q ss_pred HCCCCCCHHHHHHHHHHhhcCCchhh
Q 043311 225 AKGFVPDEKAVKEALIDKRGQGFRGV 250 (257)
Q Consensus 225 ~~g~~p~~~t~~~ll~~~~~~g~~~~ 250 (257)
+...+ ..-+..++...+..|....
T Consensus 966 d~~~r--~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 966 TTPLK--KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HSSSC--HHHHHHHHHHHHHHCCHHH
T ss_pred CHHHH--HHHHHHHHHHHHhCCChhh
Confidence 76654 4566667776666555443
No 272
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=66.72 E-value=27 Score=23.63 Aligned_cols=64 Identities=14% Similarity=0.127 Sum_probs=44.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCC
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ--GKEALRVFMRMLASGVAPN 156 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~~~ 156 (257)
.++.-|...|+.++|.+.++++..-.+ -...++..+..++-+.++ .+.+..++..+...|+-+.
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 589999999999999999999863211 123445556666666542 4678888888887775533
No 273
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=65.74 E-value=23 Score=26.21 Aligned_cols=55 Identities=20% Similarity=0.178 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 043311 178 LGDAQKYLMEMVGKGMRPNA-GTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232 (257)
Q Consensus 178 ~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 232 (257)
......+|..|...|+--.. ..|...-..+...|++.+|.++|+.-.+.+-+|-.
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYN 150 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 45777788888877665544 34677777777888888888888888888777753
No 274
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=64.88 E-value=3.1 Score=30.04 Aligned_cols=175 Identities=14% Similarity=0.122 Sum_probs=74.6
Q ss_pred cccCCCCHHHHHHHHHHHHhCCCCCc--HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCh
Q 043311 64 VDEEPTDPRNLQEIFHKMRTEGLTNN--AVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVV---AHTAVIEAYASAGQG 138 (257)
Q Consensus 64 ~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~li~~~~~~~~~ 138 (257)
..+..|+.+.+..++..-...--..+ -.+.+...++.|+.+ +++.+.+.|..++.. .++.+ ...+..|+.
T Consensus 11 ~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l-~~A~~~~~~ 85 (201)
T 3hra_A 11 EAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIE----IAKALIDRGADINLQNSISDSPY-LYAGAQGRT 85 (201)
T ss_dssp HHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCH
T ss_pred HHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHH-HHHHHcCCH
Confidence 44556676666666543220000111 113444445566644 444444556555432 23333 334455665
Q ss_pred HHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCC
Q 043311 139 KEALRVFMRMLASGVAP---NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP---NAGTYTAVFEAFVRAQK 212 (257)
Q Consensus 139 ~~a~~~~~~m~~~g~~~---~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~li~~~~~~~~ 212 (257)
+-+..+++. .+..+ |..-.+.+.. .+.. |..+.+..+++.-. ..+ |..-.+.|..++ ..++
T Consensus 86 ~~~~~Ll~~---~~~~~~~~~~~g~t~L~~-A~~~-----~~~~~v~~Ll~~g~---~~~~~~~~~g~t~L~~A~-~~~~ 152 (201)
T 3hra_A 86 EILAYMLKH---ATPDLNKHNRYGGNALIP-AAEK-----GHIDNVKLLLEDGR---EDIDFQNDFGYTALIEAV-GLRE 152 (201)
T ss_dssp HHHHHHHHH---SCCCTTCCCTTSCCSHHH-HHHT-----TCHHHHHHHHHHCC---CCTTCCCTTSCCHHHHHH-HSSC
T ss_pred HHHHHHHhc---cCcccccccCCCCcHHHH-HHHc-----CCHHHHHHHHHcCC---CCcCCCCCCCCCHHHHHH-Hhcc
Confidence 544444322 22222 2222233333 3332 22544444443320 222 222233444433 3333
Q ss_pred -HHHHHHHHHHHHHCCCCCCHHHHH--HHHHHhhcCCchhhHHhhhc
Q 043311 213 -VDEARGLLQQMKAKGFVPDEKAVK--EALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 213 -~~~a~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~g~~~~~~~l~~ 256 (257)
...-.++++.+.+.|..++..... +-+......|..+.++-+.+
T Consensus 153 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~ 199 (201)
T 3hra_A 153 GNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199 (201)
T ss_dssp CSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred chhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHh
Confidence 333355666666777666532211 23344455566666665544
No 275
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=64.73 E-value=17 Score=25.29 Aligned_cols=67 Identities=13% Similarity=0.142 Sum_probs=49.3
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhH
Q 043311 184 YLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVI 251 (257)
Q Consensus 184 ~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~ 251 (257)
+.+.+.+.|++++.. =..+++.+...+.+-.|.++++.+.+.+...+..|....|..+...|.....
T Consensus 14 ~~~~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~ 80 (150)
T 2xig_A 14 LRMSIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISVL 80 (150)
T ss_dssp HHHHHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEEE
Confidence 334566788876543 3345666667777889999999999888788999999999999998876543
No 276
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=64.51 E-value=19 Score=28.68 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=13.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPD 121 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~ 121 (257)
.+...+..|+.+-+..+++.-...|..++
T Consensus 87 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 115 (364)
T 3ljn_A 87 PIHLAVMANKTDLVVALVEGAKERGQMPE 115 (364)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHHHcCCHHHHHHHHHhccccCCCHH
Confidence 33344445555555555554444444433
No 277
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=64.33 E-value=30 Score=24.60 Aligned_cols=54 Identities=13% Similarity=0.182 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 043311 180 DAQKYLMEMVGKGMRPNAG-TYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK 233 (257)
Q Consensus 180 ~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 233 (257)
....+|..|...|+--... .|...-..+-..|++.+|.++|..-.+.+-+|-..
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 4667888998888766554 57777777888899999999999999998888654
No 278
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=63.48 E-value=11 Score=26.17 Aligned_cols=66 Identities=14% Similarity=0.117 Sum_probs=49.1
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhH
Q 043311 184 YLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVI 251 (257)
Q Consensus 184 ~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~ 251 (257)
+-+.+.+.|++++..= ..+++.+...+ .-.|.++++++.+.+...+..|...-|..+...|....+
T Consensus 6 ~~~~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~i 71 (145)
T 3eyy_A 6 WKSDLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVSHA 71 (145)
T ss_dssp HHHHHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEEE
Confidence 3445677888877653 23444445555 678999999999888888999999999999888876543
No 279
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=63.47 E-value=6.6 Score=27.06 Aligned_cols=59 Identities=17% Similarity=0.103 Sum_probs=40.3
Q ss_pred HHhCCCCCcHH--HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChH
Q 043311 81 MRTEGLTNNAV--KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGK 139 (257)
Q Consensus 81 m~~~~~~p~~~--~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 139 (257)
..+.|+.++.. .++..+...+..-.|.++++.+.+.+...+..|--..|..+...|-+.
T Consensus 5 ~r~~g~r~T~qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 65 (139)
T 3mwm_A 5 GPPVKGRATRQRAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVD 65 (139)
T ss_dssp -----CHHHHHHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSE
T ss_pred cCCCCCccCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 34455554443 477777777667778999999988877778887777788888887543
No 280
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=61.76 E-value=16 Score=25.10 Aligned_cols=121 Identities=15% Similarity=0.045 Sum_probs=53.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHH
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA---YTYAVLIKGLA 168 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~---~t~~~ll~~~~ 168 (257)
+.+...++.|+.+.+..+++.-...-...+..-++.| ...+..|+.+ +++.+.+.|..++. .-++.+..++
T Consensus 10 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L-~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~- 83 (165)
T 3twr_A 10 RQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPL-HFAAGYNRVS----VVEYLLQHGADVHAKDKGGLVPLHNAC- 83 (165)
T ss_dssp HHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHH-HHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHH-
T ss_pred HHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHH-HHHHHcChHH----HHHHHHhcCCCCCccCCCCCCHHHHHH-
Confidence 4455556667766666655431111111122222333 3344556643 44445555554433 2223343333
Q ss_pred hccCCcchhHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 043311 169 AAADGNAKILGDAQKYLMEMVGKGMRPNAGT--YTAVFEAFVRAQKVDEARGLLQQMKAKGFVPD 231 (257)
Q Consensus 169 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 231 (257)
..++ .+. ++.+.+.|..++... -.+.+...+..|+.+.+..++ +.|..++
T Consensus 84 ~~~~-----~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~ga~~~ 135 (165)
T 3twr_A 84 SYGH-----YEV----AELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLL----QHGADPT 135 (165)
T ss_dssp HTTC-----HHH----HHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH----HTTCCTT
T ss_pred HcCc-----HHH----HHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH----HcCCCCc
Confidence 3222 443 334444555444322 112344445667766444444 4455443
No 281
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=61.45 E-value=9.3 Score=28.13 Aligned_cols=171 Identities=12% Similarity=0.027 Sum_probs=88.5
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCC--CCcHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCC
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGL--TNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDV---VAHTAVIEAYASAGQ 137 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~~~~ 137 (257)
...+..|+.+.+..++..-...-. ..+-.+.+...+..|+.+- ++.+.+.|..++. .-++.+.. .+..|+
T Consensus 11 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~-A~~~~~ 85 (231)
T 3aji_A 11 CNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEI----VEFLLQLGVPVNDKDDAGWSPLHI-AASAGX 85 (231)
T ss_dssp HHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHH----HHHHHHTTCCSCCCCTTSCCHHHH-HHHHTC
T ss_pred HHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHH----HHHHHHhCCCCCCcCCCCCCHHHH-HHHcCH
Confidence 455677888888888775433111 1112245555666777554 4445556655543 23344444 445566
Q ss_pred hHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHHcCC
Q 043311 138 GKEALRVFMRMLASGVAPNA---YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGT--YTAVFEAFVRAQK 212 (257)
Q Consensus 138 ~~~a~~~~~~m~~~g~~~~~---~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~~~ 212 (257)
.+ +++.+.+.|..++. .-++.+..++ ..++ .+. ++.+.+.|..++... -.+.+...+..|+
T Consensus 86 ~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~-----~~~----~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 151 (231)
T 3aji_A 86 DE----IVKALLVKGAHVNAVNQNGCTPLHYAA-SKNR-----HEI----AVMLLEGGANPDAKDHYDATAMHRAAAKGN 151 (231)
T ss_dssp HH----HHHHHHHTTCCTTCCCTTSCCHHHHHH-HTTC-----HHH----HHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred HH----HHHHHHHcCCCCCCCCCCCCCHHHHHH-HcCC-----HHH----HHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence 54 44555566655433 3344444444 4222 443 444445666555432 2234455556677
Q ss_pred HHHHHHHHHHHHHCCCCCCHH--HHHHHHHHhhcCCchhhHHhhhc
Q 043311 213 VDEARGLLQQMKAKGFVPDEK--AVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 213 ~~~a~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
.+.+..++ +.|..++.. .-.+-+......|..+.+.-+.+
T Consensus 152 ~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 193 (231)
T 3aji_A 152 LKMVHILL----FYKASTNIQDTEGNTPLHLACDEERVEEAKFLVT 193 (231)
T ss_dssp HHHHHHHH----HTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHH----hcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence 66554444 456655432 11233445556777777766654
No 282
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=61.21 E-value=11 Score=27.58 Aligned_cols=43 Identities=7% Similarity=-0.017 Sum_probs=20.0
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHH-----HHHHHHHhcCChHHHHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAV-----KMFDALSKDGLTHEALQL 109 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-----~ll~~~~~~~~~~~a~~~ 109 (257)
...+..|+.+.+..++ +.|..++.. +.+...+..|+.+-+..+
T Consensus 30 ~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 77 (223)
T 2f8y_A 30 HLAARYSRSDAAKRLL----EASADANIQDNMGRTPLHAAVSADAQGVFQIL 77 (223)
T ss_dssp HHHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHcCCHHHHHHHH----HcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence 4445566655444444 334433321 344445556665444333
No 283
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=60.92 E-value=3 Score=30.93 Aligned_cols=200 Identities=13% Similarity=0.091 Sum_probs=92.5
Q ss_pred hhhhcccCCCCccchhhcccCCCC-CCcccccc-ccccCCCCHHHHHHHHHHHHhCCCCCcH------HHHHHHHHhcCC
Q 043311 31 LQRSLSSSSDQPTKKYVNTKSKLP-PPYDPFKK-VVDEEPTDPRNLQEIFHKMRTEGLTNNA------VKMFDALSKDGL 102 (257)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~-~~~~~~~~~~~a~~~~~~m~~~~~~p~~------~~ll~~~~~~~~ 102 (257)
+......++....+.++.....+. ++...... ...+..|+++.+.-+++ .|..++. .+.+...+..|+
T Consensus 13 l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~~~~~~~~~~~~~~t~L~~A~~~~~ 88 (240)
T 3eu9_A 13 IVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYIS----KGAIVDQLGGDLNSTPLHWATRQGH 88 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTCCTTCCBTTTTBCHHHHHHHHTC
T ss_pred HHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHH----cCCcchhhcCCcCCChhHHHHHcCC
Confidence 344455566655555554433221 12222222 45566676655544443 3332221 134455555666
Q ss_pred hHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhccCCcch
Q 043311 103 THEALQLFAQIKDKGHMPDVV---AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA---YTYAVLIKGLAAAADGNAK 176 (257)
Q Consensus 103 ~~~a~~~~~~m~~~g~~p~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~---~t~~~ll~~~~~~~~~~~~ 176 (257)
.+ +++.+.+.|..++.. .++. +...+..|+.+ +++.+.+.|..++. .-.+.+..++.....
T Consensus 89 ~~----~v~~Ll~~g~~~~~~~~~g~t~-l~~A~~~~~~~----~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~---- 155 (240)
T 3eu9_A 89 LS----MVVQLMKYGADPSLIDGEGCSC-IHLAAQFGHTS----IVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHS---- 155 (240)
T ss_dssp HH----HHHHHHHTTCCTTCCCTTSCCH-HHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCS----
T ss_pred HH----HHHHHHHcCCCCcccCCCCCCH-HHHHHHcCHHH----HHHHHHhcCCCccccCCCCCcHHHHHHHhCCh----
Confidence 44 344444555554432 2233 33444556654 44444555544432 333445444433221
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHhhcCCchhhH
Q 043311 177 ILGDAQKYLMEMVGKGMRPNAGT---YTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAV--KEALIDKRGQGFRGVI 251 (257)
Q Consensus 177 ~~~~a~~~~~~m~~~g~~p~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~--~~ll~~~~~~g~~~~~ 251 (257)
. .+.+.+.+.|..++... -.+.+...+..|+.+.+..+++ .|..++.... .+.+......|..+.+
T Consensus 156 --~---~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~l~~A~~~~~~~~v 226 (240)
T 3eu9_A 156 --V---DPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLE----AGANVDAQNIKGESALDLAKQRKNVWMI 226 (240)
T ss_dssp --S---TTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHH----HTCCTTCBCTTSCBHHHHHHHTTCHHHH
T ss_pred --H---HHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHcCcHHHH
Confidence 1 22333444454444322 2244555667777765555544 3555542211 1234455667777777
Q ss_pred Hhhhc
Q 043311 252 NILFG 256 (257)
Q Consensus 252 ~~l~~ 256 (257)
+-+.+
T Consensus 227 ~~L~~ 231 (240)
T 3eu9_A 227 NHLQE 231 (240)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66653
No 284
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=60.90 E-value=36 Score=24.24 Aligned_cols=53 Identities=15% Similarity=0.220 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 043311 105 EALQLFAQIKDKGHMPD-VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA 157 (257)
Q Consensus 105 ~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 157 (257)
++.++|..|..+|+--. ...|...-..+-..|++.+|.++|+.=.+.+-+|-.
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 35666777776666443 334555555566667777777777666666555543
No 285
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=60.73 E-value=9.8 Score=28.86 Aligned_cols=13 Identities=0% Similarity=-0.128 Sum_probs=6.1
Q ss_pred HHHHHHhcCChHH
Q 043311 93 MFDALSKDGLTHE 105 (257)
Q Consensus 93 ll~~~~~~~~~~~ 105 (257)
.+...++.|+.+.
T Consensus 8 ~L~~A~~~g~~~~ 20 (285)
T 1wdy_A 8 LLIKAVQNEDVDL 20 (285)
T ss_dssp HHHHHHHTTCHHH
T ss_pred HHHHHHHcCCHHH
Confidence 3444455555443
No 286
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=60.33 E-value=20 Score=24.78 Aligned_cols=66 Identities=18% Similarity=0.146 Sum_probs=50.6
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhH
Q 043311 185 LMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVI 251 (257)
Q Consensus 185 ~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~ 251 (257)
.+.+.+.|++++..=. .+++.+...+..-.|.++++.+.+.+-..+..|....|..+...|.....
T Consensus 10 ~~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~ 75 (145)
T 2fe3_A 10 LETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKEL 75 (145)
T ss_dssp HHHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEEE
Confidence 3456778888765433 44555556677788999999999888788999999999999998876543
No 287
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.12 E-value=75 Score=26.53 Aligned_cols=158 Identities=10% Similarity=0.081 Sum_probs=99.8
Q ss_pred ccccCCCCHHHHHHHHHHHHh-CCCCCcHH-HHHHHH----HhcCChHHHHH--HHHHHH---hCCCCC---CHHHHHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRT-EGLTNNAV-KMFDAL----SKDGLTHEALQ--LFAQIK---DKGHMP---DVVAHTAV 128 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~-~~~~p~~~-~ll~~~----~~~~~~~~a~~--~~~~m~---~~g~~p---~~~~~~~l 128 (257)
..|...|+++...+.+..+.+ .|..+... .+++.+ ......+.-.+ +.+... +..+-. .......|
T Consensus 64 ~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~L 143 (445)
T 4b4t_P 64 DLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDL 143 (445)
T ss_dssp HHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 677888999998888776665 34333333 233333 33343332222 111111 111111 22345667
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHhccCCcchhHHHHHHHHHHHH----hCCCCCCH--
Q 043311 129 IEAYASAGQGKEALRVFMRMLAS--GVAPN---AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMV----GKGMRPNA-- 197 (257)
Q Consensus 129 i~~~~~~~~~~~a~~~~~~m~~~--g~~~~---~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~----~~g~~p~~-- 197 (257)
...|...|++.+|..++.++... |.... ...|..-++.|...+| +..|..++.... ...-.|+.
T Consensus 144 a~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d-----~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 144 VEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGD-----YSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 88899999999999999998743 32222 3577788888999666 999998888764 22222222
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 043311 198 GTYTAVFEAFVRAQKVDEARGLLQQMKA 225 (257)
Q Consensus 198 ~~~~~li~~~~~~~~~~~a~~~~~~m~~ 225 (257)
..|...+..+...+++.+|.+.|.+.-+
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3577778888889999999998888754
No 288
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=58.90 E-value=79 Score=30.09 Aligned_cols=164 Identities=11% Similarity=0.126 Sum_probs=101.6
Q ss_pred cccc-ccccCCCCHHHHHHHHHHHHhCCCCC-------------------------c-HHHHHHHHHhcCChHHHHHHHH
Q 043311 59 PFKK-VVDEEPTDPRNLQEIFHKMRTEGLTN-------------------------N-AVKMFDALSKDGLTHEALQLFA 111 (257)
Q Consensus 59 ~~~~-~~~~~~~~~~~a~~~~~~m~~~~~~p-------------------------~-~~~ll~~~~~~~~~~~a~~~~~ 111 (257)
+|.. .++...|++++|.+.|.+... |+.. . ...++..+.+.+.++.+.++-.
T Consensus 845 ~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~ 923 (1139)
T 4fhn_B 845 VYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL 923 (1139)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4555 778899999999999976532 1110 0 1147777788888888887655
Q ss_pred HHHhCC-CC-CC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccC-------CcchhHHH
Q 043311 112 QIKDKG-HM-PD--VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAAD-------GNAKILGD 180 (257)
Q Consensus 112 ~m~~~g-~~-p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~-------~~~~~~~~ 180 (257)
...+.. .. ++ ...|..+++++...|++++|...+-.+.....+ .....-++...|..+. +-.|..++
T Consensus 924 lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~ 1001 (1139)
T 4fhn_B 924 LADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVNQLTKQGKINQLLNYSMPTLRQD 1001 (1139)
T ss_dssp HHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHH
T ss_pred HHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHhCCChhhhhCCCCccHHHH
Confidence 444332 11 11 236899999999999999999999999876544 4566777777776554 11244566
Q ss_pred HHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHH
Q 043311 181 AQKYLMEMVGK--GMRPNAGTYTAVFEAFVRAQKVDEARG-LLQQMKA 225 (257)
Q Consensus 181 a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~~~~~~a~~-~~~~m~~ 225 (257)
+.+++..-... .+.....-|..|=.=+...|++-.|-. +|++..+
T Consensus 1002 Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 1002 VDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 66666543211 111112335555555566666654444 4666543
No 289
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=57.27 E-value=13 Score=26.42 Aligned_cols=64 Identities=9% Similarity=0.058 Sum_probs=49.9
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHhhcCCchhhH
Q 043311 187 EMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK--GFVPDEKAVKEALIDKRGQGFRGVI 251 (257)
Q Consensus 187 ~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g~~~~~ 251 (257)
.+.+.|++++.. =..+++.+...+.+-.|.++++.+.+. +...+..|...-|..+...|...+.
T Consensus 23 ~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~i 88 (162)
T 4ets_A 23 ILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSI 88 (162)
T ss_dssp HHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 455678887653 345667777777888999999999987 7778899999999999988876554
No 290
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=55.39 E-value=30 Score=22.05 Aligned_cols=62 Identities=16% Similarity=0.203 Sum_probs=36.0
Q ss_pred HHHHHHhCCCCCcHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 043311 77 IFHKMRTEGLTNNAV-KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEAL 142 (257)
Q Consensus 77 ~~~~m~~~~~~p~~~-~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 142 (257)
++..+.+.|+..... .-|.........+.|.++++.+..+| ...|..++.++...|+...|.
T Consensus 26 vld~L~~~~vlt~~~~e~I~~~~~~t~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 26 LWDVLLSRELFRPHMIEDIQRAGSGSRRDQARQLIIDLETRG----SQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp THHHHHHTTSSCHHHHHHHHTSTTCCHHHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHhccCCChHHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHHHHH
Confidence 555666666443321 22322111245677888888877764 467777777777767655553
No 291
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=54.77 E-value=12 Score=25.40 Aligned_cols=49 Identities=14% Similarity=0.158 Sum_probs=39.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhh
Q 043311 202 AVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGV 250 (257)
Q Consensus 202 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 250 (257)
.+++.+...+..-.|.++++.+.+.+-..+..|....|..+...|....
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~ 63 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDT 63 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEE
Confidence 4555556666778899999999888878888999999999888887654
No 292
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=54.11 E-value=10 Score=27.95 Aligned_cols=179 Identities=13% Similarity=0.047 Sum_probs=83.5
Q ss_pred hhhhhhcccCCCCccchhhcccCCCCCCccc--c-ccccccCCCCHHHHHHHHHHHHhCCCCCcHH-----HHHHHHHhc
Q 043311 29 ATLQRSLSSSSDQPTKKYVNTKSKLPPPYDP--F-KKVVDEEPTDPRNLQEIFHKMRTEGLTNNAV-----KMFDALSKD 100 (257)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~-~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-----~ll~~~~~~ 100 (257)
+.+...+..+..+....++............ . .+...+..|+.+.+. .+.+.|..++.. +.+...+..
T Consensus 44 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~g~t~l~~A~~~ 119 (240)
T 3eu9_A 44 TLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVV----QLMKYGADPSLIDGEGCSCIHLAAQF 119 (240)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHH----HHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred CHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHH----HHHHcCCCCcccCCCCCCHHHHHHHc
Confidence 3444555555555555444433322211111 1 114455566665444 444555554422 355556667
Q ss_pred CChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhccCCc
Q 043311 101 GLTHEALQLFAQIKDKGHMPDV---VAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYT---YAVLIKGLAAAADGN 174 (257)
Q Consensus 101 ~~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t---~~~ll~~~~~~~~~~ 174 (257)
|+.+ +++.+.+.|..++. .-.+.+..++...+.. ... +.+.+.|..++... -.+.+...+..+
T Consensus 120 ~~~~----~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~-~~~---~~L~~~~~~~~~~~~~~g~t~L~~A~~~~--- 188 (240)
T 3eu9_A 120 GHTS----IVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSV-DPT---RLLLTFNVSVNLGDKYHKNTALHWAVLAG--- 188 (240)
T ss_dssp TCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSS-TTH---HHHHHTTCCTTCCCTTTCCCHHHHHHHHT---
T ss_pred CHHH----HHHHHHhcCCCccccCCCCCcHHHHHHHhCChH-HHH---HHHHhcCCCcchhhccCCCcHHHHHHHcC---
Confidence 7755 44555556655543 3345555555444433 333 33444444443221 112333444423
Q ss_pred chhHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 043311 175 AKILGDAQKYLMEMVGKGMRPNAGT--YTAVFEAFVRAQKVDEARGLLQQMKAKGF 228 (257)
Q Consensus 175 ~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 228 (257)
..+.+..++ +.|..++... -.+.+...++.|+.+.+..+++...+.|+
T Consensus 189 --~~~~v~~Ll----~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~ 238 (240)
T 3eu9_A 189 --NTTVISLLL----EAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGY 238 (240)
T ss_dssp --CHHHHHHHH----HHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC-----
T ss_pred --CHHHHHHHH----HcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhccCc
Confidence 355444443 3455554322 12345666788888887777776555443
No 293
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=53.48 E-value=61 Score=24.36 Aligned_cols=52 Identities=15% Similarity=0.176 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 043311 104 HEALQLFAQIKDKGHMPD-VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155 (257)
Q Consensus 104 ~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~ 155 (257)
+++.++|..|..+|+--. ...|...-..+...|++++|..+|+.=.+.+-+|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 467788888888877554 4467777777777888888888887766665555
No 294
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=53.14 E-value=95 Score=25.56 Aligned_cols=96 Identities=15% Similarity=0.091 Sum_probs=62.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCHHHHHHHH
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGHMPD-----VVAHTAVIEAYASAGQGKEALRVFMRMLAS--GVAPNAYTYAVLI 164 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~t~~~ll 164 (257)
.+...|...|++.+|.+++..+.+.-.+.| +.+|-.-+..|...+++.++...+..-... .+.+++..-+ .+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a-~i 182 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG-AL 182 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH-HH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH-HH
Confidence 478899999999999999988876522222 456777888899999999999999776543 2334443332 22
Q ss_pred HHHHhccCC-cchhHHHHHHHHHHH
Q 043311 165 KGLAAAADG-NAKILGDAQKYLMEM 188 (257)
Q Consensus 165 ~~~~~~~~~-~~~~~~~a~~~~~~m 188 (257)
+.|+..-.. ..+.|..|...|-+.
T Consensus 183 ~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 183 DLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHhhHHHHHhccCHHHHHHHHHHH
Confidence 222211111 134478777766554
No 295
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=52.72 E-value=19 Score=24.47 Aligned_cols=64 Identities=13% Similarity=0.113 Sum_probs=48.4
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhH
Q 043311 187 EMVGKGMRPNAGTYTAVFEAFVRAQ-KVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVI 251 (257)
Q Consensus 187 ~m~~~g~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~ 251 (257)
.|.+.|++++..=. .+++.+...+ ..-.|.++++.+.+.+-..+..|....|..+...|.....
T Consensus 8 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~ 72 (136)
T 1mzb_A 8 ELRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRH 72 (136)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEEE
Confidence 46678888765433 3455555555 6788999999999998888999999999999888876543
No 296
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=52.29 E-value=93 Score=25.26 Aligned_cols=46 Identities=11% Similarity=0.231 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcC
Q 043311 199 TYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQ 245 (257)
Q Consensus 199 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 245 (257)
..+.+|.-|...|+.++|.++++++..-.+. .......+..+..+.
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~ 264 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLEST 264 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccC
Confidence 4789999999999999999999998532221 133344444455543
No 297
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=52.28 E-value=93 Score=25.24 Aligned_cols=68 Identities=13% Similarity=0.095 Sum_probs=47.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCCHHHH
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ--GKEALRVFMRMLASGVAPNAYTY 160 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~~~~~t~ 160 (257)
.+|.-|...|+.++|.+.++++..-.+. ...++.++..++-+.++ .+.+..++..+...|+-......
T Consensus 222 ~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~ 291 (358)
T 3eiq_C 222 MLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMK 291 (358)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 4899999999999999999999752221 23445666666665443 46688888888888765444333
No 298
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=52.10 E-value=82 Score=25.59 Aligned_cols=22 Identities=27% Similarity=0.061 Sum_probs=10.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHH
Q 043311 200 YTAVFEAFVRAQKVDEARGLLQ 221 (257)
Q Consensus 200 ~~~li~~~~~~~~~~~a~~~~~ 221 (257)
.+.|.-+.+..|..+-+.-+++
T Consensus 199 ~TpL~~Aa~~~G~~eiv~~Ll~ 220 (376)
T 2aja_A 199 YYAFRWAAVGRGHHNVINFLLD 220 (376)
T ss_dssp HHHHHHHHSTTCCHHHHHHHTT
T ss_pred CCHHHHHHHHCCCHHHHHHHHh
Confidence 3444433326666665555544
No 299
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=51.59 E-value=47 Score=23.53 Aligned_cols=68 Identities=12% Similarity=0.090 Sum_probs=46.9
Q ss_pred chhHHHHHHHHHHHHhCCCCC--CHHHHHHHHH-H-----HHHcCCHHHHHHHHHHHHHC--CCCC-----CHHHHHHHH
Q 043311 175 AKILGDAQKYLMEMVGKGMRP--NAGTYTAVFE-A-----FVRAQKVDEARGLLQQMKAK--GFVP-----DEKAVKEAL 239 (257)
Q Consensus 175 ~~~~~~a~~~~~~m~~~g~~p--~~~~~~~li~-~-----~~~~~~~~~a~~~~~~m~~~--g~~p-----~~~t~~~ll 239 (257)
.|.+-+|.++|++.-...-.+ ....|..||+ . ..+.|+...|..++.+.... ++.+ |...+...+
T Consensus 45 ~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L~~~~~~~~GIDv~~L~~~~ 124 (161)
T 2ijq_A 45 SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYFRGVPNDYYGVDLLDVRTTV 124 (161)
T ss_dssp TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTSCTTGGGBCHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCccCCcCHHHHHHHH
Confidence 455999999999988664455 5567888888 2 34569999999999998763 3333 444444444
Q ss_pred HHh
Q 043311 240 IDK 242 (257)
Q Consensus 240 ~~~ 242 (257)
..+
T Consensus 125 ~~~ 127 (161)
T 2ijq_A 125 TNA 127 (161)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 300
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=51.53 E-value=35 Score=24.87 Aligned_cols=148 Identities=10% Similarity=0.002 Sum_probs=80.7
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCC----C--cHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-------------
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLT----N--NAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVV------------- 123 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~----p--~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~------------- 123 (257)
...+..|+.+.+..+++.-...... . +-.+.+...+..|+.+ +.+.+.+.|..++..
T Consensus 42 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~~~~~~~~~~~ 117 (232)
T 2rfa_A 42 HIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVN----LVRALLARGASVSARATGSVFHYRPHNL 117 (232)
T ss_dssp HHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCCSGGGSCCTTCS
T ss_pred HHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHH----HHHHHHhCCCCCCcccCCcceeeccccc
Confidence 5556778887777666643321100 0 1123455555667755 444555566655542
Q ss_pred ---HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCC--
Q 043311 124 ---AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA---YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP-- 195 (257)
Q Consensus 124 ---~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~---~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p-- 195 (257)
-++. +...+..|+.+- ++.+.+.|..++. .-.+.+ ...+. .|..+.+..+++.+.+.|-.+
T Consensus 118 ~~~g~t~-L~~A~~~~~~~~----v~~Ll~~ga~~~~~d~~g~t~L-~~A~~-----~~~~~~~~~i~~~Ll~~g~~~~~ 186 (232)
T 2rfa_A 118 IYYGEHP-LSFAACVGSEEI----VRLLIEHGADIRAQDSLGNTVL-HILIL-----QPNKTFACQMYNLLLSYDGGDHL 186 (232)
T ss_dssp CCCCSSH-HHHHHHHTCHHH----HHHHHHTTCCTTCCCTTSCCHH-HHHHT-----CSCHHHHHHHHHHHHHTTCSCSS
T ss_pred ccCCCCH-HHHHHHcCCHHH----HHHHHHCCCCCCCCCCCCCCHH-HHHHH-----cCChHHHHHHHHHHHhcCCchhh
Confidence 2333 444455666544 4445556655442 233333 33445 334777777778888776543
Q ss_pred -------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 043311 196 -------NAGTYTAVFEAFVRAQKVDEARGLLQQMKAK 226 (257)
Q Consensus 196 -------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 226 (257)
|..-. +.+...++.|+.+.+..++++-...
T Consensus 187 ~~~~~~~~~~g~-tpl~~A~~~g~~~~v~~Ll~~g~~~ 223 (232)
T 2rfa_A 187 KSLELVPNNQGL-TPFKLAGVEGNIVMFQHLMQKRKHI 223 (232)
T ss_dssp CCGGGCCCTTSC-CHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred hhhhccCCCCCC-CHHHHHHHcCCHHHHHHHHhcCccc
Confidence 22223 3455556788888888887776554
No 301
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=51.40 E-value=46 Score=25.03 Aligned_cols=54 Identities=11% Similarity=0.054 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 043311 179 GDAQKYLMEMVGKGMRPNAG-TYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDE 232 (257)
Q Consensus 179 ~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 232 (257)
+....+|..|...||--... .|...-..+...|++.+|.++|+.-.+.+-+|-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 35668999999888766554 5788888888999999999999999999888854
No 302
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=51.02 E-value=25 Score=20.70 Aligned_cols=51 Identities=10% Similarity=0.068 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhh
Q 043311 199 TYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGV 250 (257)
Q Consensus 199 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 250 (257)
.++-+++.++...-+++++..+++..+.| ..+..+|.--++..++..+...
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaReQF~~R 54 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQQFLVR 54 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777888888888888877 4566777777776666555443
No 303
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=50.84 E-value=91 Score=24.66 Aligned_cols=25 Identities=12% Similarity=0.364 Sum_probs=22.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 043311 200 YTAVFEAFVRAQKVDEARGLLQQMK 224 (257)
Q Consensus 200 ~~~li~~~~~~~~~~~a~~~~~~m~ 224 (257)
.+.+|.-|...|+.++|.++++++.
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~ 193 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELE 193 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 6788899999999999999999985
No 304
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=50.51 E-value=20 Score=24.91 Aligned_cols=66 Identities=12% Similarity=0.085 Sum_probs=49.9
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhH
Q 043311 185 LMEMVGKGMRPNAGTYTAVFEAFVRAQ-KVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVI 251 (257)
Q Consensus 185 ~~~m~~~g~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~ 251 (257)
.+.|.+.|++++..=. .+++.+...+ ..-.|.++++.+.+.+...+..|....|..+...|.....
T Consensus 5 ~~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~ 71 (150)
T 2w57_A 5 NQALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTRH 71 (150)
T ss_dssp HHHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEEE
Confidence 3456778888776533 3445555555 6778999999999998888999999999999998886543
No 305
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=50.39 E-value=48 Score=21.30 Aligned_cols=56 Identities=13% Similarity=0.152 Sum_probs=30.4
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-----HHCCCCCCHHHHHHH
Q 043311 181 AQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQM-----KAKGFVPDEKAVKEA 238 (257)
Q Consensus 181 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m-----~~~g~~p~~~t~~~l 238 (257)
+.++.+++..-|+.|+..+..-++.-|...+- + +.++.++. ...|..|+..+.+.+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 44455555555677766666666666666653 2 22222221 234666766665544
No 306
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=50.28 E-value=31 Score=27.08 Aligned_cols=15 Identities=7% Similarity=0.175 Sum_probs=7.8
Q ss_pred cCCCCHHHHHHHHHH
Q 043311 66 EEPTDPRNLQEIFHK 80 (257)
Q Consensus 66 ~~~~~~~~a~~~~~~ 80 (257)
+..|..+.+..+++.
T Consensus 133 ~~~~~~~~~~~ll~~ 147 (337)
T 4g8k_A 133 AVYGKVKALKFLYKR 147 (337)
T ss_dssp HHTTCHHHHHHHHHT
T ss_pred HHcCcHHHHHHHHHc
Confidence 445555555555543
No 307
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=50.10 E-value=24 Score=28.33 Aligned_cols=65 Identities=11% Similarity=0.152 Sum_probs=39.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCH
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAG-QGKEALRVFMRMLASGVAPNA 157 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~~~~ 157 (257)
.++.-|...|++++|.+.++++..-... ...++..+..++-+.. ..+.+..++..+.+.|+-+..
T Consensus 16 ~ll~Ey~~~~d~~Ea~~ci~el~~p~~~-~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~ 81 (339)
T 1ug3_A 16 AIIEEYLHLNDMKEAVQCVQELASPSLL-FIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTA 81 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHTTCCGGGH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCcccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHH
Confidence 4889999999999999988887542111 1223333333333321 346677788888877654333
No 308
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=49.69 E-value=1.1e+02 Score=25.22 Aligned_cols=155 Identities=11% Similarity=-0.024 Sum_probs=0.0
Q ss_pred HHHHHHhcCC---hHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043311 93 MFDALSKDGL---THEALQLFAQIKDKGHM--PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167 (257)
Q Consensus 93 ll~~~~~~~~---~~~a~~~~~~m~~~g~~--p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~ 167 (257)
++...|..|+ .+.|.+.|+...+.+.. .+...-..+...-.+. .++-..+++...... +..--..++.++
T Consensus 203 ~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~~Vy~~~~~~--~~~~~~l~~~y~~s~---~~~ek~~ll~aL 277 (419)
T 3rjo_A 203 LLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVFAVGAQS--TEGWDFLYSKYQFSL---SSTEKSQIEFAL 277 (419)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGHHHHHHHHTTS--HHHHHHHHHHHHHCC---CHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCcceeEEeeeeCC--HHHHHHHHHHHhcCC---CHHHHHHHHHHc
Q ss_pred HhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH---HHHHCCCCCCHHHHHHHHHHhhc
Q 043311 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQ---QMKAKGFVPDEKAVKEALIDKRG 244 (257)
Q Consensus 168 ~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~---~m~~~g~~p~~~t~~~ll~~~~~ 244 (257)
+...+ .+...++++......+......+..+.......--.+.+.+.+. +.....+.++...+..+|.+..+
T Consensus 278 ~~s~d-----~~ll~~~L~~~l~~~~ir~qD~~~~~~~v~~n~~g~~~aw~fl~~nw~~l~~~~~~~~~~~~~~i~~~~~ 352 (419)
T 3rjo_A 278 CRTQN-----KEKLQWLLDESFKGDKIKTQEFPQILTLIGRNPVGYPLAWQFLRKNWNKLVQKFELGSSSIAHMVMGTTN 352 (419)
T ss_dssp TTCSC-----HHHHHHHHHHHHHTSSSCGGGHHHHHHHHHTSTTTHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHTTT
T ss_pred CCCCC-----HHHHHHHHHHHhCCCCCchhHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHhCcCchhHHHHHHHHhh
Q ss_pred C----CchhhHHhhhcC
Q 043311 245 Q----GFRGVINILFGK 257 (257)
Q Consensus 245 ~----g~~~~~~~l~~k 257 (257)
. ...+.++.+|++
T Consensus 353 ~~~t~~~l~e~~~Ff~~ 369 (419)
T 3rjo_A 353 QFSTRTRLEEVKGFFSS 369 (419)
T ss_dssp TCCSHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHh
No 309
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=49.53 E-value=1.1e+02 Score=25.20 Aligned_cols=157 Identities=9% Similarity=0.042 Sum_probs=81.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCC-CCC---CHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCHHHH------H
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKG-HMP---DVVAHTAVIEAYASAG-QGKEALRVFMRMLASGVAPNAYTY------A 161 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g-~~p---~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~t~------~ 161 (257)
|...|.+.|+.++..+++...+.-- .-| ..-....+|+.+.... ..+.-.++..+..+.. +-...+| .
T Consensus 25 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr~~l~~ 103 (394)
T 3txn_A 25 QGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLRQSLEA 103 (394)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 6667777777777777766654320 011 1234556666666543 3333344444433210 0011233 1
Q ss_pred HHHHHHHhccCCcchhHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHH
Q 043311 162 VLIKGLAAAADGNAKILGDAQKYLMEMVGK--GMRPN---AGTYTAVFEAFVRAQKVDEARGLLQQMKAK--GFVPDEKA 234 (257)
Q Consensus 162 ~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~--g~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~t 234 (257)
-+...|...|+ +.+|.+++..+.+. .+... ...|-.-++.|...+++.++..++...... .+.+++.+
T Consensus 104 kL~~l~~~~~~-----y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 104 RLIALYFDTAL-----YTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHTTC-----HHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHhhh-----HHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 45666666444 77777777766642 11111 123555566777778888887777776533 34355444
Q ss_pred HHHHHHH----hh-cCCchhhHHhhh
Q 043311 235 VKEALID----KR-GQGFRGVINILF 255 (257)
Q Consensus 235 ~~~ll~~----~~-~~g~~~~~~~l~ 255 (257)
...+-.. +. ..+++..|...|
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F 204 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYF 204 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHH
Confidence 3333221 33 566666666555
No 310
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=48.74 E-value=55 Score=21.58 Aligned_cols=13 Identities=23% Similarity=0.179 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHh
Q 043311 157 AYTYAVLIKGLAA 169 (257)
Q Consensus 157 ~~t~~~ll~~~~~ 169 (257)
..++..+++...+
T Consensus 53 ~~s~rd~~r~a~~ 65 (119)
T 1wty_A 53 ARSPRAAIRGAFQ 65 (119)
T ss_dssp CSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 3344444444444
No 311
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=48.11 E-value=58 Score=21.67 Aligned_cols=43 Identities=9% Similarity=0.060 Sum_probs=29.8
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 043311 184 YLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAK 226 (257)
Q Consensus 184 ~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 226 (257)
+|+.+.+..+.|++..--.-|..+...++++.|..+...+...
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 5666666667666555555566667788899998888777653
No 312
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=47.94 E-value=11 Score=25.87 Aligned_cols=51 Identities=24% Similarity=0.204 Sum_probs=38.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhH
Q 043311 201 TAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVI 251 (257)
Q Consensus 201 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~ 251 (257)
..+++.+...+..-.|.++++.+.+.+-..+..|....|..+...|.....
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~ 67 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVL 67 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 345555556666777888999988888788888888888888888876543
No 313
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=47.85 E-value=95 Score=24.81 Aligned_cols=65 Identities=17% Similarity=0.182 Sum_probs=38.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCC
Q 043311 125 HTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR 194 (257)
Q Consensus 125 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~ 194 (257)
...+|.=|...|++++|...++++..-.. ....++.++..+.-+ +...-+.+..++..+.+.|+-
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~-~~~~v~~~i~~~le~----~~~~re~~~~Ll~~L~~~~~i 78 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSL-LFIFVRHGVESTLER----SAIAREHMGQLLHQLLCAGHL 78 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGG-HHHHHHHHHHHHTTT----CHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCccc-HHHHHHHHHHHHhCC----CHHHHHHHHHHHHHHHHCCCC
Confidence 45688889999999999999988852111 112222222222222 123356667777777766543
No 314
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=47.20 E-value=87 Score=23.44 Aligned_cols=47 Identities=15% Similarity=0.078 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHHHhCCCCCcHH----------HHHHHHHhcCChHHHHHHHHHHHhC
Q 043311 70 DPRNLQEIFHKMRTEGLTNNAV----------KMFDALSKDGLTHEALQLFAQIKDK 116 (257)
Q Consensus 70 ~~~~a~~~~~~m~~~~~~p~~~----------~ll~~~~~~~~~~~a~~~~~~m~~~ 116 (257)
-++.|+.+|+.+.+.-..+... ..+-.|.+.|.+++|.++|+..-..
T Consensus 87 PLESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 87 PLESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred hHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 4677899999888865444432 2456778888888888888877654
No 315
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=46.42 E-value=39 Score=22.54 Aligned_cols=44 Identities=14% Similarity=-0.046 Sum_probs=33.7
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043311 108 QLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151 (257)
Q Consensus 108 ~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 151 (257)
-+|+.+.+..+.|++..--.-|..+...++++.|.++...+...
T Consensus 47 ~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 47 LLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 35777777777777666666667778889999999999888753
No 316
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=46.34 E-value=53 Score=22.39 Aligned_cols=144 Identities=11% Similarity=0.076 Sum_probs=61.6
Q ss_pred cccCCCCHHHHHHHHHHHHhCCCCCc-HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCChHH
Q 043311 64 VDEEPTDPRNLQEIFHKMRTEGLTNN-AVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAH--TAVIEAYASAGQGKE 140 (257)
Q Consensus 64 ~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~--~~li~~~~~~~~~~~ 140 (257)
..+..|+.+.+..+++.-........ -.+.+...+..|+.+ +.+.+.+.|..++.... .+.+...+..|+.+-
T Consensus 9 ~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~ 84 (167)
T 3v31_A 9 QLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIA----VVEFLLQNGADPQLLGKGRESALSLACSKGYTDI 84 (167)
T ss_dssp HHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHH
T ss_pred HHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHH----HHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHH
Confidence 34556676666666544211111111 113444455566644 33444445554442211 123333444555543
Q ss_pred HHHHHHHHHHCCCCCCH---HHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHHcCCHHH
Q 043311 141 ALRVFMRMLASGVAPNA---YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGT--YTAVFEAFVRAQKVDE 215 (257)
Q Consensus 141 a~~~~~~m~~~g~~~~~---~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~~~~~~ 215 (257)
+ +.+.+.|..++. .-++.+..++ ..++ .+.+. .+.+.|..++... -.+.+...+..|+.+.
T Consensus 85 v----~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~-----~~~v~----~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~ 150 (167)
T 3v31_A 85 V----KMLLDCGVDVNEYDWNGGTPLLYAV-HGNH-----VKCVK----MLLESGADPTIETDSGYNSMDLAVALGYRSV 150 (167)
T ss_dssp H----HHHHHHTCCTTCCCTTSCCHHHHHH-HTTC-----HHHHH----HHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred H----HHHHHCCCCCCcCCCCCCCHHHHHH-HcCC-----HHHHH----HHHHcCCCCCCcCCCCCCHHHHHHHcCcHHH
Confidence 3 333333433332 2233333333 3222 43333 3334454443321 1234445556677776
Q ss_pred HHHHHHHHHH
Q 043311 216 ARGLLQQMKA 225 (257)
Q Consensus 216 a~~~~~~m~~ 225 (257)
+..+++...+
T Consensus 151 ~~~L~~~~~~ 160 (167)
T 3v31_A 151 QQVIESHLLK 160 (167)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666544
No 317
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=46.02 E-value=8.1 Score=26.76 Aligned_cols=114 Identities=11% Similarity=0.045 Sum_probs=52.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHH--HHHHHH
Q 043311 129 IEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTY--TAVFEA 206 (257)
Q Consensus 129 i~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~--~~li~~ 206 (257)
+...++.|+.+.+..+++.-...-...+..-++.+..+ +..|+ .+ +++.+.+.|..++.... .+.+..
T Consensus 12 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~~~-----~~----~v~~Ll~~g~~~~~~~~~g~t~L~~ 81 (165)
T 3twr_A 12 LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFA-AGYNR-----VS----VVEYLLQHGADVHAKDKGGLVPLHN 81 (165)
T ss_dssp HHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHH-HHTTC-----HH----HHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred HHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHH-HHcCh-----HH----HHHHHHhcCCCCCccCCCCCCHHHH
Confidence 34456677777766555431111011222223444444 34233 44 44444555655543321 233444
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHhhcCCchhhHHhhhc
Q 043311 207 FVRAQKVDEARGLLQQMKAKGFVPDEKAV--KEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 207 ~~~~~~~~~a~~~~~~m~~~g~~p~~~t~--~~ll~~~~~~g~~~~~~~l~~ 256 (257)
.+..|+.+.+.. +.+.|..++.... .+.+......|..+.++.+++
T Consensus 82 A~~~~~~~~v~~----Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 129 (165)
T 3twr_A 82 ACSYGHYEVAEL----LVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQ 129 (165)
T ss_dssp HHHTTCHHHHHH----HHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHcCcHHHHHH----HHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 556777765444 4445655542211 122333445566666665543
No 318
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=45.75 E-value=12 Score=21.59 Aligned_cols=32 Identities=22% Similarity=0.420 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-Hh
Q 043311 138 GKEALRVFMRMLASGVAPNAYTYAVLIKGL-AA 169 (257)
Q Consensus 138 ~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~-~~ 169 (257)
.++|...|.+|++..-.+...||.-.|+.+ ++
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~ 34 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTR 34 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccC
Confidence 367888888887654455667888888887 54
No 319
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=45.61 E-value=29 Score=23.34 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=35.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQG 138 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 138 (257)
.++..+...+..-.|.++++.+.+.+...+..|--..|+.+...|-+
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 47777777766677888888888877677777777777778777754
No 320
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=45.44 E-value=12 Score=25.40 Aligned_cols=17 Identities=18% Similarity=0.260 Sum_probs=8.8
Q ss_pred HHHhcCChHHHHHHHHH
Q 043311 96 ALSKDGLTHEALQLFAQ 112 (257)
Q Consensus 96 ~~~~~~~~~~a~~~~~~ 112 (257)
..++.|+.+.+..+++.
T Consensus 8 ~A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 8 GAAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHHTCHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHh
Confidence 33445555555555544
No 321
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=44.73 E-value=1.2e+02 Score=24.13 Aligned_cols=135 Identities=12% Similarity=0.026 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHhCCCCCcHH----HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH---
Q 043311 71 PRNLQEIFHKMRTEGLTNNAV----KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALR--- 143 (257)
Q Consensus 71 ~~~a~~~~~~m~~~~~~p~~~----~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~--- 143 (257)
.++.+.-++.-.+.|---.+. |+..-|.+.+++++|.+++..--. .+.+.|+...|-+
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~ 77 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIF 77 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHH
Confidence 444444444444444322222 466777778888888887554322 2444455444333
Q ss_pred -HHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 043311 144 -VFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM--RPNAGTYTAVFEAFVRAQKVDEARGLL 220 (257)
Q Consensus 144 -~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~~~~~~a~~~~ 220 (257)
+.+-..+.++++|.....-+++.+.........+..-..+.+.--.+.|- .-|......+-..|.+.|++.+|..-|
T Consensus 78 llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 78 YLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 45555566777777777777776655443222222222222222222221 225566777778888888887777644
No 322
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=44.16 E-value=16 Score=26.90 Aligned_cols=66 Identities=8% Similarity=-0.171 Sum_probs=28.5
Q ss_pred HHHHHHhCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHhhcCCchhhHHh
Q 043311 184 YLMEMVGKGMRPNAGT--YTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEK--AVKEALIDKRGQGFRGVINI 253 (257)
Q Consensus 184 ~~~~m~~~g~~p~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~g~~~~~~~ 253 (257)
+++.+.+.|..++... -.+.+...++.|+.+.+.. +.+.|..++.. .=.+-+......|....+.+
T Consensus 159 ~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~----Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~ 228 (237)
T 3b7b_A 159 IAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVL----FLSRDSDVTLKNKEGETPLQCASLNSQVWSALQ 228 (237)
T ss_dssp HHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHH----HHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHH
T ss_pred HHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHH----HHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHH
Confidence 4444555565554321 1233444556666554433 33445544321 11123333444555544443
No 323
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=43.92 E-value=80 Score=22.07 Aligned_cols=52 Identities=17% Similarity=0.142 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 043311 104 HEALQLFAQIKDKGHMPD-VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155 (257)
Q Consensus 104 ~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~ 155 (257)
+++.++|..|..+|+--. ...|...-..+...|++++|.++|+.=.+.+-+|
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 346677777777666443 3455566666666677777777776666555555
No 324
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=43.89 E-value=40 Score=18.58 Aligned_cols=44 Identities=14% Similarity=0.279 Sum_probs=24.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCcHH-HHHHHHHhcCChHHHHHHHHH
Q 043311 69 TDPRNLQEIFHKMRTEGLTNNAV-KMFDALSKDGLTHEALQLFAQ 112 (257)
Q Consensus 69 ~~~~~a~~~~~~m~~~~~~p~~~-~ll~~~~~~~~~~~a~~~~~~ 112 (257)
.|...|.++++.+.+.|-.|... .-+.--.++.-.....++|+.
T Consensus 7 RDv~RaiELle~lq~sgevp~~KL~aLq~VLqSdF~~aVREVYEh 51 (53)
T 1zl8_A 7 RDVQRILELMEHVQKTGEVNNAKLASLQQVLQSEFFGAVREVYET 51 (53)
T ss_dssp HHHHHHHHHHHHHGGGSSSTHHHHHHHHHHHSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777766654 223333333334445555553
No 325
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=43.76 E-value=44 Score=25.05 Aligned_cols=23 Identities=13% Similarity=0.176 Sum_probs=12.5
Q ss_pred hcCChHHHHHHHHHHHHCCCCCC
Q 043311 134 SAGQGKEALRVFMRMLASGVAPN 156 (257)
Q Consensus 134 ~~~~~~~a~~~~~~m~~~g~~~~ 156 (257)
..++.....++++.+.+.|..++
T Consensus 191 ~~~~~~~~~~i~~~Ll~~g~~~~ 213 (285)
T 1wdy_A 191 LSSDDSDVEAITHLLLDHGADVN 213 (285)
T ss_dssp HCSCTTTHHHHHHHHHHTTCCSS
T ss_pred HccccchHHHHHHHHHHcCCCCC
Confidence 34444445556666666665544
No 326
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=43.73 E-value=9.2 Score=29.61 Aligned_cols=171 Identities=10% Similarity=0.002 Sum_probs=88.2
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcH---HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcC
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNA---VKMFDALSKDGLTHEALQLFAQIKDKGHMPDV---VAHTAVIEAYASAG 136 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~~~ 136 (257)
...+..|+.+.+..+++. |..++. .+.+...+..|+.+-+ +.+.+.|..++. .-++.|. ..+..|
T Consensus 36 ~~A~~~g~~~~v~~Ll~~----g~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~ga~~~~~d~~g~t~L~-~A~~~g 106 (285)
T 3kea_A 36 YYAIADNNVRLVCTLLNA----GALKNLLENEFPLHQAATLEDTKIV----KILLFSGLDDSQFDDKGNTALY-YAVDSG 106 (285)
T ss_dssp HHHHHTTCHHHHHHHHHT----TGGGSCCTTCCHHHHHTTSSSCHHH----HHHHHTTCCTTCCCTTSCCHHH-HHHHTT
T ss_pred HHHHHcCCHHHHHHHHhC----CCCCCCCCCCCHHHHHHHcCCHHHH----HHHHHCCCCCCCcCCCCCcHHH-HHHHcC
Confidence 556677887766666554 333221 2455555667776544 444456665543 2334444 445567
Q ss_pred ChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCC
Q 043311 137 QGKEALRVFMRMLASGVAPNAY---TYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQK 212 (257)
Q Consensus 137 ~~~~a~~~~~~m~~~g~~~~~~---t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~ 212 (257)
+.+-+.- +.+.|..++.. -+.+.+...+..|+ .+ +++.+.+.|..+ +...-.+.+...+..|+
T Consensus 107 ~~~~v~~----Ll~~ga~~~~~~~~g~~t~L~~A~~~~~-----~~----~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~ 173 (285)
T 3kea_A 107 NMQTVKL----FVKKNWRLMFYGKTGWKTSFYHAVMLND-----VS----IVSYFLSEIPSTFDLAILLSCIHITIKNGH 173 (285)
T ss_dssp CHHHHHH----HHHHCGGGGGCSSSGGGSHHHHHHHTTC-----HH----HHHHHHTTSCTTCCCSTHHHHHHHHHHTTC
T ss_pred CHHHHHH----HHhcCCCCCccCCCCCCCHHHHHHHcCC-----HH----HHHHHHhCCCccccccCCccHHHHHHHcCh
Confidence 6654433 33445444432 22334444445333 44 444445555443 22133455556678888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 213 VDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 213 ~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
.+.+..+++.-.+-... |..-.+..+......|..+.++-+.+
T Consensus 174 ~~~v~~Ll~~gad~n~~-~~~g~t~~L~~A~~~~~~~~v~~Ll~ 216 (285)
T 3kea_A 174 VDMMILLLDYMTSTNTN-NSLLFIPDIKLAIDNKDIEMLQALFK 216 (285)
T ss_dssp HHHHHHHHHHHHHTCTT-CCCBCCTTHHHHHHHTCHHHHHHHTT
T ss_pred HHHHHHHHHcCCCCCcc-cCCCCChHHHHHHHcCCHHHHHHHHH
Confidence 88887777765544332 21222223444555677777776654
No 327
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=43.55 E-value=11 Score=28.45 Aligned_cols=150 Identities=11% Similarity=0.042 Sum_probs=77.6
Q ss_pred CCCCHHHHHHHHHHHHhCCC---------CC---cHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH----------
Q 043311 67 EPTDPRNLQEIFHKMRTEGL---------TN---NAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVA---------- 124 (257)
Q Consensus 67 ~~~~~~~a~~~~~~m~~~~~---------~p---~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~---------- 124 (257)
+.|..+.+.-+++.-...+. .. .-.+.+...+..|+.+ +.+.+.+.|..++...
T Consensus 58 ~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~----~v~~Ll~~ga~~~~~~~~~~~~~~~~ 133 (260)
T 3jxi_A 58 SAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKH----YVELLVEKGADVHAQARGRFFQPKDE 133 (260)
T ss_dssp BTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCEECCCSSSCC
T ss_pred hcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHH----HHHHHHhCCCCcCccccccccCcccc
Confidence 67888888888876544221 10 1113445555677765 4444555676666543
Q ss_pred ------HHHHHHHHHhcCChHHHHHHHHHHHH---CCCCCC---HHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCC
Q 043311 125 ------HTAVIEAYASAGQGKEALRVFMRMLA---SGVAPN---AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192 (257)
Q Consensus 125 ------~~~li~~~~~~~~~~~a~~~~~~m~~---~g~~~~---~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g 192 (257)
-.+.|...+..|+.+- .+.+.+ .|..++ ..-++.|..++.. ++...+..+...++++.+.+.|
T Consensus 134 ~~~~~~g~tpL~~A~~~g~~~~----v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~-~~~~~~~~~~~~~~v~~Ll~~g 208 (260)
T 3jxi_A 134 GGYFYFGELPLSLAACTNQPHI----VHYLTENGHKQADLRRQDSRGNTVLHALVAI-ADNTRENTKFVTKMYDLLLIKC 208 (260)
T ss_dssp CCSCCSCSSHHHHHHHTTCHHH----HHHHHHCSSCCCCTTCCCTTSCCHHHHHHHH-CCSSHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCCHHHHHHHcCCHHH----HHHHHhccccCCCCcccCCCCCcHHHHHHHh-ccCchhHHHHHHHHHHHHHHhC
Confidence 2234444556676544 444455 555443 3334455544432 2212222333345555555443
Q ss_pred CCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 043311 193 MRP----------NAGTYTAVFEAFVRAQKVDEARGLLQQMKAK 226 (257)
Q Consensus 193 ~~p----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 226 (257)
..+ |..-. +-+...++.|+.+.+..++++-...
T Consensus 209 a~~~~~~~~~~~~d~~g~-tpL~~A~~~g~~~~v~~Ll~~g~~~ 251 (260)
T 3jxi_A 209 AKLFPDTNLEALLNNDGL-SPLMMAAKTGKIGIFQHIIRREIAD 251 (260)
T ss_dssp HHHCTTCCGGGCCCTTSC-CHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccccccchhhcccCCCC-CHHHHHHHcCCHHHHHHHHHhCCCc
Confidence 322 22222 3445556788888888888876654
No 328
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=43.13 E-value=1.1e+02 Score=23.56 Aligned_cols=69 Identities=13% Similarity=0.123 Sum_probs=31.8
Q ss_pred HHHHHHHhCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHhhcCCchhhHHhhh
Q 043311 183 KYLMEMVGKGMRPNAGT--YTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAV--KEALIDKRGQGFRGVINILF 255 (257)
Q Consensus 183 ~~~~~m~~~g~~p~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~--~~ll~~~~~~g~~~~~~~l~ 255 (257)
++++.+.+.|..++... -.+.+...++.|+.+.+. .+.+.|..+|.... .+-+......|..+.++-|+
T Consensus 228 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~----~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll 300 (351)
T 3utm_A 228 QVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVME----VLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLL 300 (351)
T ss_dssp HHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHH----HHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHH----HHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence 45555556665554322 123344455677765443 44455655542110 11222333455666555554
No 329
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=42.84 E-value=1.1e+02 Score=24.26 Aligned_cols=64 Identities=16% Similarity=0.133 Sum_probs=44.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCC
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ--GKEALRVFMRMLASGVAPN 156 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~~~ 156 (257)
.++.-|...|+.++|.+.++++..-.+. ...++.++..++-+.++ .+.+..++..+.+.|+-+.
T Consensus 171 ~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~ 236 (307)
T 2zu6_B 171 MLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITV 236 (307)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCH
Confidence 4899999999999999999998742111 13445555556655433 4667888888887765533
No 330
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=42.79 E-value=1.5e+02 Score=24.79 Aligned_cols=124 Identities=13% Similarity=0.173 Sum_probs=80.2
Q ss_pred CCHHHHHHHHHHHHhC--------C--CCCcHHHHHHHHHhcCChHHHHHHHHHHHhCCC-------CCC----------
Q 043311 69 TDPRNLQEIFHKMRTE--------G--LTNNAVKMFDALSKDGLTHEALQLFAQIKDKGH-------MPD---------- 121 (257)
Q Consensus 69 ~~~~~a~~~~~~m~~~--------~--~~p~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~-------~p~---------- 121 (257)
-+.+....++...... + +.++....+..+ ..|+...+..+++....... ..+
T Consensus 165 l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~-~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 165 LSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL-VNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp CCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH-HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH-CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhh
Confidence 3466677777766653 1 222222334333 46777777777776643211 011
Q ss_pred --------HHHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHh
Q 043311 122 --------VVAHTAVIEAYAS---AGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG 190 (257)
Q Consensus 122 --------~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~ 190 (257)
...+-.+|+++.+ .++.+.|+.++.+|.+.|..|....=-.+..+....|..+..-+..|...++..+.
T Consensus 244 ~~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~ 323 (447)
T 3pvs_A 244 RSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTR 323 (447)
T ss_dssp CCCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHH
T ss_pred hhhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHH
Confidence 1123345566554 47899999999999999988888888888888888777556667788888887777
Q ss_pred CCC
Q 043311 191 KGM 193 (257)
Q Consensus 191 ~g~ 193 (257)
-|.
T Consensus 324 ~g~ 326 (447)
T 3pvs_A 324 VGP 326 (447)
T ss_dssp SCH
T ss_pred hCC
Confidence 664
No 331
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=41.47 E-value=1.5e+02 Score=24.66 Aligned_cols=39 Identities=21% Similarity=0.062 Sum_probs=28.4
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCc
Q 043311 209 RAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGF 247 (257)
Q Consensus 209 ~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 247 (257)
+..+.+.|...+.+|.+.|..|....-..++.+...-|.
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~ 305 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGN 305 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccC
Confidence 456888888888888888887776666666666666555
No 332
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=41.38 E-value=46 Score=23.76 Aligned_cols=160 Identities=12% Similarity=0.092 Sum_probs=89.5
Q ss_pred cccCCCCHHHHHHHHHHHHhCCCCCcH-H---HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhc-
Q 043311 64 VDEEPTDPRNLQEIFHKMRTEGLTNNA-V---KMFDALSKDGLTHEALQLFAQIKDKGHMPDVV---AHTAVIEAYASA- 135 (257)
Q Consensus 64 ~~~~~~~~~~a~~~~~~m~~~~~~p~~-~---~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~li~~~~~~- 135 (257)
..++.|+++....++.. +..... . |.|-..+..|+.+.-.++.+.+.+.|..++.. -++.|..++...
T Consensus 12 ~Aa~~g~~~~~~~l~~~----~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~ 87 (186)
T 3t8k_A 12 AAAMLGTYEDFLELFEK----GYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGG 87 (186)
T ss_dssp HHHHHSCHHHHHHHHHH----SSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCT
T ss_pred HHHHcCCHHHHHHHHhc----CcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC
Confidence 44567888876666543 322211 1 45556666777777778888888888877653 344555544433
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhccCCcchhHHHHHHHHHHHHh-CCCCCCHHHH--HHHHHHHHH
Q 043311 136 GQGKEALRVFMRMLASGVAPNAYT---YAVLIKGLAAAADGNAKILGDAQKYLMEMVG-KGMRPNAGTY--TAVFEAFVR 209 (257)
Q Consensus 136 ~~~~~a~~~~~~m~~~g~~~~~~t---~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~~~--~~li~~~~~ 209 (257)
.+.....++.+.+.+.|..+|... .++.+...+..+. .......+++.+.+ .|..++.... .+.+....+
T Consensus 88 ~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~----~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~ 163 (186)
T 3t8k_A 88 NDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFV----DENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKR 163 (186)
T ss_dssp TCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCS----CHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHT
T ss_pred cchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCC----ChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHH
Confidence 334555677888888887766532 2123332222221 02344556666776 7776654321 233444556
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC
Q 043311 210 AQKVDEARGLLQQMKAKGFVPD 231 (257)
Q Consensus 210 ~~~~~~a~~~~~~m~~~g~~p~ 231 (257)
.|..+.+.-+.+.+.+.+++.+
T Consensus 164 ~~~~~~v~~L~~~~~~~~~~~~ 185 (186)
T 3t8k_A 164 CQKPIALKMMEDYIKKYNLKEN 185 (186)
T ss_dssp TTCHHHHHHHHHHHHHHTCCC-
T ss_pred cCCHHHHHHHHHHHHHHhcccC
Confidence 6776666666666655565543
No 333
>1dm5_A Annexin XII E105K mutant homohexamer; novel PH-dependent hexamerization switch E76, low calcium form; 1.93A {Hydra vulgaris} SCOP: a.65.1.1 PDB: 1aei_A
Probab=40.78 E-value=1.3e+02 Score=23.71 Aligned_cols=159 Identities=9% Similarity=0.135 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHhCCCCCcHHHHHHHHHhcCCh--HHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCChHHHHHH
Q 043311 72 RNLQEIFHKMRTEGLTNNAVKMFDALSKDGLT--HEALQLFAQIKDKGHMPD-----VVAHTAVIEAYASAGQGKEALRV 144 (257)
Q Consensus 72 ~~a~~~~~~m~~~~~~p~~~~ll~~~~~~~~~--~~a~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~~~~~~a~~~ 144 (257)
..|..+.+.|. |...+..+++..++..... ....+.|..+-...+.-+ .-.|..+|.++...-....|..+
T Consensus 16 ~DA~~L~~A~k--G~Gtde~~lieIL~~rs~~q~~~I~~~Y~~~yg~~L~~dl~se~sG~f~~ll~~l~~~~~~~dA~~L 93 (315)
T 1dm5_A 16 EDAETLRKAMK--GIGTDEKSITHILATRSNAQRQQIKTDYTTLFGKHLEDELKSELSGNYEAAALALLRKPDEFLAEQL 93 (315)
T ss_dssp HHHHHHHHHHS--SSSCCHHHHHHHHHHSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHhc--CCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHCCCHHHHHHhhcCccHHHHHHHHccChhHHHHHHH
Confidence 45777777774 5556777888888876543 335555666543322111 12477788888776556788888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHHcCCH------
Q 043311 145 FMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNA-----GTYTAVFEAFVRAQKV------ 213 (257)
Q Consensus 145 ~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-----~~~~~li~~~~~~~~~------ 213 (257)
.+.|...| .|..++.-++ +... ..++....+.|+.+-...+.-+. -.|.-++-+.++..+.
T Consensus 94 ~~A~kg~G--tde~~lieIL---~tRs---~~ql~~i~~~Y~~~yg~~Le~dI~~e~sG~~~~~L~~lv~~~r~~~~~vd 165 (315)
T 1dm5_A 94 HAAMKGLG--TDKNALIDIL---CTQS---NAQIHAIKAAFKLLYKEDLEKEIISETSGNFQRLLVSMLQGGRKEDEPVN 165 (315)
T ss_dssp HHHHHSSS--CCHHHHHHHH---SSCC---HHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHTTCCCTTCCCC
T ss_pred HHHhhcCC--CchhhhhhhH---hcCC---HHHHHHHHHHHHHHhCccHHHHHHhccCchHHHHHHHHHccccCCCCCCC
Confidence 88886544 4665544444 3311 23355566666655433222111 2355555555554321
Q ss_pred -----HHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043311 214 -----DEARGLLQQMKAKGFVPDEKAVKEALID 241 (257)
Q Consensus 214 -----~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 241 (257)
..|..+++-|... .-.|..++..++..
T Consensus 166 ~~~a~~dA~~L~~A~~~~-~GTde~~lirIl~~ 197 (315)
T 1dm5_A 166 AAHAAEDAAAIYQAGEGQ-IGTDESRFNAVLAT 197 (315)
T ss_dssp HHHHHHHHHHHHHHTTTS-SSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCc-CCCcHHHHHHHHHh
Confidence 4466666666432 34688878777653
No 334
>2zk9_X Protein-glutaminase; deamidation glutaminase, hydrolase; 1.15A {Chryseobacterium proteolyticum} PDB: 2ksv_A 2z8t_X
Probab=39.44 E-value=60 Score=23.21 Aligned_cols=43 Identities=14% Similarity=0.134 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHHHHhccC--------------CcchhHHHHHHHHHHHHhCCCCCC
Q 043311 154 APNAYTYAVLIKGLAAAAD--------------GNAKILGDAQKYLMEMVGKGMRPN 196 (257)
Q Consensus 154 ~~~~~t~~~ll~~~~~~~~--------------~~~~~~~~a~~~~~~m~~~g~~p~ 196 (257)
-||..||+.+....-..+. .+.|...+|..+-+.+++.|+.|+
T Consensus 5 ip~~~s~~~lf~~i~n~~~~~~~a~~pdI~f~YpddGCyARAHlm~~~l~~~Gi~p~ 61 (185)
T 2zk9_X 5 IPDVATLNSLFNQIKNESCGTSTASSPCITFRYPVDGCYARAHKMRQILMNNGYDCE 61 (185)
T ss_dssp ESCHHHHHHHHHHHHTTBTTCTTCCSSCBCTTCTTSCHHHHHHHHHHHHHHTTBCCE
T ss_pred cCchHHHHHHHHHHhhccccccccCCCCcccccCcccHHHHHHHHHHHHHHcCCChh
Confidence 3556666655554433332 345667888887777888887764
No 335
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=38.58 E-value=11 Score=27.64 Aligned_cols=145 Identities=21% Similarity=0.133 Sum_probs=75.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHh
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA---YTYAVLIKGLAA 169 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~---~t~~~ll~~~~~ 169 (257)
.+...++.|+++....++..-...-..+|..-++.|.. .+..|+.+- ++.+.+.|..++. ..++.+..++ .
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~-~ 82 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTALHW-ACSAGHTEI----VEFLLQLGVPVNDKDDAGWSPLHIAA-S 82 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHH-HHHHTCHHH----HHHHHHTTCCSCCCCTTSCCHHHHHH-H
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHH-HHHcCcHHH----HHHHHHhCCCCCCcCCCCCCHHHHHH-H
Confidence 45666778998888887765433212234444455444 455666544 4455555655433 3344444443 3
Q ss_pred ccCCcchhHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHhhcC
Q 043311 170 AADGNAKILGDAQKYLMEMVGKGMRPNAGT--YTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA--VKEALIDKRGQ 245 (257)
Q Consensus 170 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~ 245 (257)
.|+ .+ +++.+.+.|..++... -.+.+...+..|+.+.+..+ .+.|..++... -.+.+......
T Consensus 83 ~~~-----~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~L----l~~g~~~~~~~~~g~t~L~~A~~~ 149 (231)
T 3aji_A 83 AGX-----DE----IVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVML----LEGGANPDAKDHYDATAMHRAAAK 149 (231)
T ss_dssp HTC-----HH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH----HHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred cCH-----HH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH----HHcCCCCCCcCCCCCcHHHHHHHc
Confidence 222 44 4445555666554322 12344445567777655444 45666554321 12334445556
Q ss_pred CchhhHHhhhc
Q 043311 246 GFRGVINILFG 256 (257)
Q Consensus 246 g~~~~~~~l~~ 256 (257)
|..+.++.+++
T Consensus 150 ~~~~~v~~Ll~ 160 (231)
T 3aji_A 150 GNLKMVHILLF 160 (231)
T ss_dssp TCHHHHHHHHH
T ss_pred CCHHHHHHHHh
Confidence 77777766553
No 336
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=38.46 E-value=18 Score=26.29 Aligned_cols=45 Identities=11% Similarity=0.085 Sum_probs=21.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCChHHH
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGHMPDVV---AHTAVIEAYASAGQGKEA 141 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~li~~~~~~~~~~~a 141 (257)
+.+...++.|+.+-+ +.+.+.|..++.. -++ .+...+..|+.+-+
T Consensus 27 t~L~~A~~~g~~~~v----~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v 74 (223)
T 2f8y_A 27 TALHLAARYSRSDAA----KRLLEASADANIQDNMGRT-PLHAAVSADAQGVF 74 (223)
T ss_dssp CHHHHHHHTTCHHHH----HHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHHH
T ss_pred chHHHHHHcCCHHHH----HHHHHcCCCCCCcCCCCCC-HHHHHHHcCCHHHH
Confidence 345555667775544 3444455554432 223 33334555665443
No 337
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=38.29 E-value=1.3e+02 Score=22.73 Aligned_cols=88 Identities=7% Similarity=-0.008 Sum_probs=40.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC--CCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDK--GHMP----DVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKG 166 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~--g~~p----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~ 166 (257)
-++.+....++++|.++.++.++. +.++ +...-...|..-.....-.-+..+.+++.. ..+...-...++.
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 466667777777777776665542 1211 111222233333333333444444444422 3334444444455
Q ss_pred HHhccCCcchhHHHHHHHHHHH
Q 043311 167 LAAAADGNAKILGDAQKYLMEM 188 (257)
Q Consensus 167 ~~~~~~~~~~~~~~a~~~~~~m 188 (257)
+.+.|. .+.|.++|-+.
T Consensus 101 L~rLg~-----~~~A~~lfL~~ 117 (235)
T 2d2s_A 101 MIKLGL-----PEQALDLFLQN 117 (235)
T ss_dssp HHHTTC-----HHHHHHHHHHH
T ss_pred HHHCCC-----hhHHHHHHHHH
Confidence 555333 55555555444
No 338
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=38.24 E-value=89 Score=20.96 Aligned_cols=71 Identities=10% Similarity=0.103 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHH
Q 043311 124 AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAG 198 (257)
Q Consensus 124 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 198 (257)
..+.+|.=|...|+.++|.+.++++..- ......++..+..+.-+.++ ...+.+..++..+...|+-+...
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p-~f~~e~V~~~i~~alE~~~~---~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVP-HFHHELVYEAIVMVLESTGE---SAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCG-GGHHHHHHHHHHHHHHCCSS---HHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCC-ccHHHHHHHHHHHHHcCCCh---HHHHHHHHHHHHHHHCCCcCHHH
Confidence 3567888899999999999999998521 11123444455555544221 23577888888888776554433
No 339
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=38.02 E-value=1.4e+02 Score=23.26 Aligned_cols=44 Identities=9% Similarity=0.083 Sum_probs=24.3
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCC
Q 043311 144 VFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192 (257)
Q Consensus 144 ~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g 192 (257)
++..+.+.|+.|...++.=++..+++.-. ++.+..+|+.+...|
T Consensus 176 L~~hL~~~~i~~~~~~~~W~ltlF~~~lp-----~~~~~riwD~~l~~g 219 (310)
T 3hzj_A 176 LHSHFSDLNLEAHMYASQWFLTLFTAKFP-----LCMVFHIIDLLLCEG 219 (310)
T ss_dssp HHHHHHHHTCCGGGTSHHHHHHTTTTTSC-----HHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHhccCC-----HHHHHHHHHHHHHCC
Confidence 44455555666666555555555554222 566666666655544
No 340
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=37.47 E-value=55 Score=25.03 Aligned_cols=51 Identities=10% Similarity=0.104 Sum_probs=24.0
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHH-----HHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAV-----KMFDALSKDGLTHEALQLFAQIKDKGHMPD 121 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-----~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~ 121 (257)
...+..|+.+.+..++ +.|..++.. +.+...+..|+.+-+ +.+.+.|..++
T Consensus 64 ~~Aa~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~ga~~~ 119 (285)
T 3d9h_A 64 HEAAIHGHQLSLRNLI----SQGWAVNIITADHVSPLHEACLGGHLSCV----KILLKHGAQVN 119 (285)
T ss_dssp HHHHHTTCHHHHHHHH----HTTCCSCEECTTCCCHHHHHHHTTCHHHH----HHHHHTTCCSS
T ss_pred HHHHHcCCHHHHHHHH----HCCCCCCCcCCCCCCHHHHHHHCCcHHHH----HHHHHCCCCCC
Confidence 4455666665544444 344443321 344444556665433 33344454443
No 341
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=37.01 E-value=51 Score=24.70 Aligned_cols=8 Identities=13% Similarity=0.260 Sum_probs=3.4
Q ss_pred HHHcCCHH
Q 043311 207 FVRAQKVD 214 (257)
Q Consensus 207 ~~~~~~~~ 214 (257)
.++.|+.+
T Consensus 173 A~~~~~~~ 180 (261)
T 2xai_A 173 VARTASEE 180 (261)
T ss_dssp HHHHTCHH
T ss_pred HHHcCCHH
Confidence 33444443
No 342
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=36.86 E-value=66 Score=23.66 Aligned_cols=36 Identities=19% Similarity=0.050 Sum_probs=17.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCC
Q 043311 211 QKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQG 246 (257)
Q Consensus 211 ~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 246 (257)
.+.|.|+-.+-+|.+.|-.|.-..-..++.+...-|
T Consensus 21 SDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 21 SAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 455555555555555554444444444444444433
No 343
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=36.43 E-value=26 Score=26.16 Aligned_cols=57 Identities=11% Similarity=0.106 Sum_probs=34.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHh--cCChHHHHHHHHHHHH
Q 043311 94 FDALSKDGLTHEALQLFAQIKDKGHMPDV-------VAHTAVIEAYAS--AGQGKEALRVFMRMLA 150 (257)
Q Consensus 94 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~-------~~~~~li~~~~~--~~~~~~a~~~~~~m~~ 150 (257)
+-..++.|+.+.+..+++.+.+.|..++. .-++.|..++.. .|+.+-+..+++.-..
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~ 71 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKD 71 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCc
Confidence 44456678888777777777777765443 345555555443 2777666666655443
No 344
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=36.01 E-value=33 Score=27.42 Aligned_cols=44 Identities=14% Similarity=0.206 Sum_probs=27.4
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCC
Q 043311 144 VFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKG 192 (257)
Q Consensus 144 ~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g 192 (257)
++..+.+.|+.|...++.=++..+++.-. ++.+..+|+.+...|
T Consensus 215 L~~hL~~~~i~~~~~~~~W~ltlF~~~lp-----~~~~lriWD~~l~eg 258 (334)
T 2qq8_A 215 LFAHFKKNNLTPDIYLIDWIFTLYSKSLP-----LDLACRIWDVFCRDG 258 (334)
T ss_dssp HHHHHHHTTCCGGGTHHHHHHTTTTTTSC-----HHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCccchHHHHHHHHhcccCC-----HHHHHHHHHHHHHcC
Confidence 45566666777776666666666655333 667777777666554
No 345
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=34.17 E-value=0.49 Score=40.49 Aligned_cols=103 Identities=11% Similarity=0.039 Sum_probs=73.3
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAV-KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEA 141 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 141 (257)
..+.+.|.++...+.+...++..-.|... .|+.+|++.++..+..++. -.||+.-...+=+-|...|.++.|
T Consensus 91 ~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAA 163 (624)
T 3lvg_A 91 QAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAA 163 (624)
T ss_dssp HHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTS
T ss_pred HHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHH
Confidence 66778888888888887776654455443 5999999999866544432 236777777777788888888888
Q ss_pred HHHHHHHHHC--------------------CCCCCHHHHHHHHHHHHhccC
Q 043311 142 LRVFMRMLAS--------------------GVAPNAYTYAVLIKGLAAAAD 172 (257)
Q Consensus 142 ~~~~~~m~~~--------------------g~~~~~~t~~~ll~~~~~~~~ 172 (257)
.-+|..+... .-.-++.||--+..+|...++
T Consensus 164 Kilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~E 214 (624)
T 3lvg_A 164 KLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKE 214 (624)
T ss_dssp STTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCT
T ss_pred HHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchH
Confidence 7777655321 113377899999999999776
No 346
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=34.05 E-value=1.1e+02 Score=20.85 Aligned_cols=63 Identities=11% Similarity=0.001 Sum_probs=36.5
Q ss_pred HHHHHHhcCCh---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 043311 93 MFDALSKDGLT---HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA 157 (257)
Q Consensus 93 ll~~~~~~~~~---~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 157 (257)
.--++.++.+. ..++.+++++.+.+..-....+--|=-++.+.|++++|.+..+.+.+. .|+.
T Consensus 46 yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~N 111 (134)
T 3o48_A 46 YAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN 111 (134)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTTC
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCC
Confidence 33355555544 346777777766541112334444555677778888888877777763 5543
No 347
>3a54_A Protein-glutaminase; mutant structure like A substrate-enzyme complex, hydrolase; 1.50A {Chryseobacterium proteolyticum} PDB: 3a55_A 3a56_A*
Probab=34.01 E-value=72 Score=24.51 Aligned_cols=23 Identities=13% Similarity=0.085 Sum_probs=18.2
Q ss_pred cchhHHHHHHHHHHHHhCCCCCC
Q 043311 174 NAKILGDAQKYLMEMVGKGMRPN 196 (257)
Q Consensus 174 ~~~~~~~a~~~~~~m~~~g~~p~ 196 (257)
+.|...+|..+-..+.+.|+.|+
T Consensus 153 dDGCyARAHLM~~~l~~~Gi~p~ 175 (305)
T 3a54_A 153 VDGCYARAHKMRQILMNNGYDCE 175 (305)
T ss_dssp TSCHHHHHHHHHHHHHHTTBCCE
T ss_pred cccHHHHHHHHHHHHHHcCCChh
Confidence 45778888888888888888775
No 348
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=33.95 E-value=37 Score=24.58 Aligned_cols=169 Identities=10% Similarity=-0.002 Sum_probs=84.2
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcH--HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHh
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNA--VKMFDALSKDGLTHEALQLFAQIKDKGHMPDV------VAHTAVIEAYAS 134 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~------~~~~~li~~~~~ 134 (257)
...+..|+.+.+..+++.-.......+. .+.+...+..|+.+ +++.+.+.|-.++. .-++.+..+ +.
T Consensus 7 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A-~~ 81 (228)
T 2dzn_A 7 HQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHE----ITSFLLSKMENVNLDDYPDDSGWTPFHIA-CS 81 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTCTTCCGGGCCCTTSCCHHHHH-HH
T ss_pred HHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHH----HHHHHHhccccccccccCCCCCCCHHHHH-HH
Confidence 3456678888877777654332221221 24555566677754 45555566633332 334445444 45
Q ss_pred cCChHHHHHHHHHHHHCC--CCCC---HHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHH
Q 043311 135 AGQGKEALRVFMRMLASG--VAPN---AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGT--YTAVFEAF 207 (257)
Q Consensus 135 ~~~~~~a~~~~~~m~~~g--~~~~---~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~ 207 (257)
.|+.+ +++.+.+.| ..++ ..-++.+..+ +..++ .+. ++.+.+.|..++... -.+.+...
T Consensus 82 ~~~~~----~~~~Ll~~g~~~~~~~~~~~g~t~L~~A-~~~~~-----~~~----~~~Ll~~g~~~~~~~~~g~t~L~~A 147 (228)
T 2dzn_A 82 VGNLE----VVKSLYDRPLKPDLNKITNQGVTCLHLA-VGKKW-----FEV----SQFLIENGASVRIKDKFNQIPLHRA 147 (228)
T ss_dssp HCCHH----HHHHHHSSSSCCCTTCCCTTCCCHHHHH-HHTTC-----HHH----HHHHHHTTCCSCCCCTTSCCHHHHH
T ss_pred cCCHH----HHHHHHhCCCCcccccCCcCCCCHHHHH-HHcCC-----HhH----HHHHHHcCCCccccCCCCCCHHHHH
Confidence 56544 556666776 3322 2333444443 34233 443 444445566554321 22334445
Q ss_pred HHcCCHHHHHHHHHHHHHCC-CCCC---HHHHHHHHHHhhcCCchhhHHhhh
Q 043311 208 VRAQKVDEARGLLQQMKAKG-FVPD---EKAVKEALIDKRGQGFRGVINILF 255 (257)
Q Consensus 208 ~~~~~~~~a~~~~~~m~~~g-~~p~---~~t~~~ll~~~~~~g~~~~~~~l~ 255 (257)
+..|+.+.+. .+.+.| ..++ ..-. +.+......|..+.+..++
T Consensus 148 ~~~~~~~~v~----~Ll~~g~~~~~~~d~~g~-t~L~~A~~~~~~~~v~~Ll 194 (228)
T 2dzn_A 148 ASVGSLKLIE----LLCGLGKSAVNWQDKQGW-TPLFHALAEGHGDAAVLLV 194 (228)
T ss_dssp HHTTCHHHHH----HHHTTTCCCSCCCCTTSC-CHHHHHHHTTCHHHHHHHH
T ss_pred HHcCCHHHHH----HHHhcCcccccCcCCCCC-CHHHHHHHcCCHHHHHHHH
Confidence 6677765444 444455 3332 2222 2334445567777776665
No 349
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=33.85 E-value=42 Score=26.65 Aligned_cols=179 Identities=12% Similarity=-0.005 Sum_probs=88.6
Q ss_pred hhhhhhcccCCCCccchhhcccCCCCCCccccccccccCCCCHHHHHHHHHHHHhCCCCCcH------------------
Q 043311 29 ATLQRSLSSSSDQPTKKYVNTKSKLPPPYDPFKKVVDEEPTDPRNLQEIFHKMRTEGLTNNA------------------ 90 (257)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~a~~~~~~m~~~~~~p~~------------------ 90 (257)
+.+...+..+..+-.+.++............-.+...+..|+.+.+..+++.-...|..++.
T Consensus 55 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (364)
T 3ljn_A 55 TALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVK 134 (364)
T ss_dssp CHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEE
T ss_pred cHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccC
Confidence 34444444555544444444333222111111225666778888888888876666666655
Q ss_pred ----HHHHHHHHhcC--ChHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCC---CH
Q 043311 91 ----VKMFDALSKDG--LTHEALQLFAQIKDKGHMPDVV---AHTAVIEAYASAGQGKEALRVFMRMLA-SGVAP---NA 157 (257)
Q Consensus 91 ----~~ll~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~~---~~ 157 (257)
.+.+...+..| +.+-+. .+.+.|..++.. -++.|. ..+..|+.+-+..+++.-.. .++.+ |.
T Consensus 135 ~~~g~t~L~~A~~~g~~~~~~v~----~Ll~~ga~~~~~d~~g~t~L~-~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~ 209 (364)
T 3ljn_A 135 HCKGQTALHWCVGLGPEYLEMIK----ILVQLGASPTAKDKADETPLM-RAMEFRNREALDLMMDTVPSKSSLRLDYANK 209 (364)
T ss_dssp EESCCCHHHHHHHSCGGGHHHHH----HHHHHTCCTTCCCTTSCCHHH-HHHHTTCHHHHHHHHHHCSCSSSCCTTCCCT
T ss_pred CCCCCCHHHHHHHcCCchHHHHH----HHHHcCCCCcccCCCCCCHHH-HHHHcCCHHHHHHHHhcccccccccccccCC
Confidence 23455556666 544333 344445554432 234444 44566776655444443221 01102 22
Q ss_pred HHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHH
Q 043311 158 YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGT--YTAVFEAFVRAQKVDEARGLLQQ 222 (257)
Q Consensus 158 ~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~~~~~~a~~~~~~ 222 (257)
.-++.|..+ +..|+ .+ +++.+.+.|..++... -.+.+...+..|+.+.+..+++.
T Consensus 210 ~g~t~L~~A-~~~g~-----~~----~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 210 QGNSHLHWA-ILINW-----ED----VAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp TCCCTTHHH-HTTTC-----HH----HHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCcHHHHH-HHcCC-----HH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHc
Confidence 333344433 34222 44 4444555666554332 22344555677888888887776
No 350
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=33.47 E-value=1.3e+02 Score=21.28 Aligned_cols=57 Identities=5% Similarity=0.061 Sum_probs=36.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--hHHHHHHHHHHHH
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQ--GKEALRVFMRMLA 150 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~ 150 (257)
++|.-|...++.++|...++++....+ .......+|..-...++ -+.+-.++..+..
T Consensus 15 ~ii~EYf~~~D~~Ea~~~l~eL~~p~~--~~~~V~~~I~~aldrk~~ere~~s~LL~~L~~ 73 (165)
T 2rg8_A 15 PIIQEYFEHGDTNEVAEMLRDLNLGEM--KSGVPVLAVSLALEGKASHREMTSKLLSDLCG 73 (165)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHTCSGG--GGHHHHHHHHHHHTSCHHHHHHHHHHHHHHBT
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCCccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 589999999999999999999874321 22233344443334443 3456677777743
No 351
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=32.89 E-value=26 Score=26.21 Aligned_cols=56 Identities=13% Similarity=0.052 Sum_probs=35.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHH--hcCChHHHHHHHHHH
Q 043311 93 MFDALSKDGLTHEALQLFAQIKDKGHMPDVV-------AHTAVIEAYA--SAGQGKEALRVFMRM 148 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-------~~~~li~~~~--~~~~~~~a~~~~~~m 148 (257)
.+-..++.|+.+....+++.+.+.|..++.. -++.|..+.. +.|+.+-+..+++.-
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 3444556788888888888777777666643 3355555543 557776666666554
No 352
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=32.36 E-value=32 Score=24.59 Aligned_cols=53 Identities=8% Similarity=-0.145 Sum_probs=26.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC-CCCCC-------HHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 204 FEAFVRAQKVDEARGLLQQMKAK-GFVPD-------EKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 204 i~~~~~~~~~~~a~~~~~~m~~~-g~~p~-------~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
++.....|.++.|+-+.+.+... +..|+ ..++..+-+++...|++..|+..|+
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~ 87 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYT 87 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 44455556666666655554432 12222 1234444455666666666666553
No 353
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=32.14 E-value=1.3e+02 Score=21.17 Aligned_cols=54 Identities=15% Similarity=0.057 Sum_probs=39.0
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHH-H-----HHhcCChHHHHHHHHHHHH
Q 043311 97 LSKDGLTHEALQLFAQIKDKGHMP--DVVAHTAVIE-A-----YASAGQGKEALRVFMRMLA 150 (257)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~li~-~-----~~~~~~~~~a~~~~~~m~~ 150 (257)
+...|++-+|.++|++.=...-.+ .-..|..||. . ..+.|+...|..++.+-..
T Consensus 42 lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 42 LYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345589999999998875554445 5567888888 2 2346889999999887764
No 354
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=31.81 E-value=60 Score=23.32 Aligned_cols=57 Identities=9% Similarity=0.035 Sum_probs=47.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhH
Q 043311 194 RPNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVI 251 (257)
Q Consensus 194 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~ 251 (257)
.|....++-|+..++...-+++++.++++....|. .+..+|.--++.+++..+...|
T Consensus 108 ~~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g~-I~ld~ylK~vR~LaReQF~~ra 164 (174)
T 2p22_A 108 VAKTDGLNQLYNLVAQDYALTDTIECLSRMLHRGT-IPLDTFVKQGRELARQQFLVRW 164 (174)
T ss_dssp ECSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 45556789999999999899999999999999984 7888888888888887766554
No 355
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=30.95 E-value=62 Score=25.29 Aligned_cols=43 Identities=14% Similarity=0.150 Sum_probs=23.3
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhhHHhhhc
Q 043311 207 FVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGVINILFG 256 (257)
Q Consensus 207 ~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~l~~ 256 (257)
.++.|+.+-+ +.+.+.|..+|..+ .+....+.|..+.++-|.+
T Consensus 280 A~~~g~~~iv----~~Ll~~GAd~n~~~---~L~~A~~~~~~~iv~~Ll~ 322 (337)
T 4g8k_A 280 AVELKLKKIA----ELLCKRGASTDCGD---LVMTARRNYDHSLVKVLLS 322 (337)
T ss_dssp HHHTTCHHHH----HHHHTTSCSSTTCC---HHHHHHHTTCHHHHHHHHH
T ss_pred HHHcCCHHHH----HHHHHCCCCCCCCC---HHHHHHHcCCHHHHHHHHH
Confidence 3456665533 34455677666544 3334455666666665543
No 356
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=30.86 E-value=88 Score=21.59 Aligned_cols=15 Identities=0% Similarity=-0.042 Sum_probs=7.2
Q ss_pred ccCCCCHHHHHHHHH
Q 043311 65 DEEPTDPRNLQEIFH 79 (257)
Q Consensus 65 ~~~~~~~~~a~~~~~ 79 (257)
.+..|+.+.+..+++
T Consensus 12 A~~~g~~~~v~~ll~ 26 (179)
T 3f6q_A 12 QCREGNAVAVRLWLD 26 (179)
T ss_dssp HHHHTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHh
Confidence 344455555554443
No 357
>1yii_A Annexin A5, annexin V, lipocortin V, endonexin II; membrane binding, matrix vessicle, protein and metal binding protein; 1.42A {Gallus gallus} PDB: 1yj0_A 1ala_A 1hvd_A 1anx_A 1anw_A 1avh_A 1avr_A 1hak_B* 1hvf_A 1hve_A 1hvg_A 1a8a_A* 1a8b_A* 2ie7_A 1g5n_A 2ie6_A 1bcz_A 1n41_A 1bcw_A 2ran_A ...
Probab=30.78 E-value=2e+02 Score=22.74 Aligned_cols=159 Identities=9% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCCCcHHHHHHHHHhcCChHH--HHHHHHHHHhCCCCCCHHH-----HHHHHHHHHhcCChHHHHHH
Q 043311 72 RNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHE--ALQLFAQIKDKGHMPDVVA-----HTAVIEAYASAGQGKEALRV 144 (257)
Q Consensus 72 ~~a~~~~~~m~~~~~~p~~~~ll~~~~~~~~~~~--a~~~~~~m~~~g~~p~~~~-----~~~li~~~~~~~~~~~a~~~ 144 (257)
..|..+.+.| .|...+..+|+..++.....+. ..+.|..+-...+.-++.. |..+|.++.....-..|..+
T Consensus 18 ~Da~~L~~A~--kG~Gtde~~lieIL~~rs~~q~~~I~~~Y~~~~g~~L~~dl~~e~sG~f~~ll~~l~~~~~~~DA~~L 95 (320)
T 1yii_A 18 ADAEALRKAM--KGMGTDEETILKILTSRNNAQRQEIASAFKTLFGRDLVDDLKSELTGKFETLMVSLMRPARIFDAHAL 95 (320)
T ss_dssp HHHHHHHHHH--SSSSCCHHHHHHHHHHSCHHHHHHHHHHHHHHHSCCHHHHHHHHCCHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHh--cCCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHCcCHHHHHhhhcCchHHHHHHHHccChHHHHHHHH
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHH-----HHHHHHHHHHcCC-------
Q 043311 145 FMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGT-----YTAVFEAFVRAQK------- 212 (257)
Q Consensus 145 ~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-----~~~li~~~~~~~~------- 212 (257)
.+.| .|...|..++.-++-.... .++....+.|+.+-...+.-+... |.-++-+.++..+
T Consensus 96 ~~A~--kg~Gtde~~lieIL~~Rs~------~ql~~I~~aY~~~y~~~Le~di~~e~sG~~~~~l~~l~~~~r~~~~~vd 167 (320)
T 1yii_A 96 KHAI--KGAGTNEKVLTEILASRTP------AEVQNIKQVYMQEYEANLEDKITGETSGHFQRLLVVLLQANRDPDGRVD 167 (320)
T ss_dssp HHHH--SSSSCCHHHHHHHHHHSCH------HHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHTTCCCCSCCCC
T ss_pred HHHh--ccCCCchHHHhHHHhcCCH------HHHHHHHHHHHHhhCcCHHHHHHhhcCCcHHHHHHHHHhhccCccccCC
Q ss_pred ----HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043311 213 ----VDEARGLLQQMKAKGFVPDEKAVKEALID 241 (257)
Q Consensus 213 ----~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 241 (257)
-.+|..+++-|.. |.-.|..++..++..
T Consensus 168 ~~~a~~dA~~L~~A~~~-~~Gtde~~li~Il~t 199 (320)
T 1yii_A 168 EALVEKDAQVLFRAGEL-KWGTDEETFITILGT 199 (320)
T ss_dssp HHHHHHHHHHHHHHHHT-TTCSSHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHh
No 358
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=30.21 E-value=1.5e+02 Score=21.10 Aligned_cols=51 Identities=14% Similarity=-0.018 Sum_probs=25.3
Q ss_pred ccccCCCCHHHHHHHHHHHHhC-CCCCcH----------HHHHHHHHhcCChHHHHHHHHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTE-GLTNNA----------VKMFDALSKDGLTHEALQLFAQI 113 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~-~~~p~~----------~~ll~~~~~~~~~~~a~~~~~~m 113 (257)
..+...|.++.|.-+...+... +..|+. .-+-+++...+.+..|...|++.
T Consensus 28 k~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 28 RDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3444556666665555544431 112221 11455556666666666666653
No 359
>1n00_A Annexin GH1; membrane-binding, calcium-binding, membrane protein; 2.10A {Gossypium hirsutum} SCOP: a.65.1.1 PDB: 3brx_A 1ycn_A 2q4c_A 1dk5_A
Probab=30.15 E-value=2e+02 Score=22.69 Aligned_cols=158 Identities=13% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCCCcHHHHHHHHHhcCChHH--HHHHHHHHHhCCCCCCHHH-----HHHHHHHHHhcCChHHHHHH
Q 043311 72 RNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHE--ALQLFAQIKDKGHMPDVVA-----HTAVIEAYASAGQGKEALRV 144 (257)
Q Consensus 72 ~~a~~~~~~m~~~~~~p~~~~ll~~~~~~~~~~~--a~~~~~~m~~~g~~p~~~~-----~~~li~~~~~~~~~~~a~~~ 144 (257)
..|..+.+.|. |...+..+|+..++.....+. ..+.|..+-...+.-++.. |..+|-++....-...|..+
T Consensus 20 ~DA~~L~~A~k--G~Gtde~~lieIL~~rs~~q~~~I~~aY~~~y~~~L~~dl~se~sG~f~~ll~~l~~~~~~~dA~~l 97 (321)
T 1n00_A 20 EDCEQLRKAFS--GWGTNEGLIIDILGHRNAEQRNLIRKTYAETYGEDLLKALDKELSNDFERLVLLWALDPAERDALLA 97 (321)
T ss_dssp HHHHHHHHHTS--SSSCCHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCHHHHHHHHSCHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHhcCchHHHHHHHHcCChhHHHHHHH
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHH-----HHHHHHHHHHcCCHH-----
Q 043311 145 FMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGT-----YTAVFEAFVRAQKVD----- 214 (257)
Q Consensus 145 ~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-----~~~li~~~~~~~~~~----- 214 (257)
.+.| +|...|..++.-++..... .++....+.|+.+-...+.-+... |.-++-+.++..+-+
T Consensus 98 ~~A~--kg~Gtde~~lieIL~tRs~------~ql~~i~~~Y~~~~g~~Le~dI~~e~sG~~~~~L~~lv~~~r~~~~~vd 169 (321)
T 1n00_A 98 NEAT--KRWTSSNQVLMEIACTRSA------NQLLHARQAYHARYKKSLEEDVAHHTTGDFHKLLLPLVSSYRYEGEEVN 169 (321)
T ss_dssp HHHH--SSSCSSCHHHHHHHHSSCH------HHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHHCCCCCSCCCC
T ss_pred HHHh--hccCCCHHHHHHHHhcCCH------HHHHHHHHHHHHHhCccHHHHHHhccCcHHHHHHHHHHhcccCCCcCCC
Q ss_pred ------HHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043311 215 ------EARGLLQQMKAKGFVPDEKAVKEALID 241 (257)
Q Consensus 215 ------~a~~~~~~m~~~g~~p~~~t~~~ll~~ 241 (257)
.|..+++-|...+-. |.. +..++..
T Consensus 170 ~~~~~~dA~~L~~A~~g~~gt-de~-lirIl~~ 200 (321)
T 1n00_A 170 MTLAKTEAKLLHEKISNKAYS-DDD-VIRVLAT 200 (321)
T ss_dssp HHHHHHHHHHHHHHHHTTCTT-CHH-HHHHHHH
T ss_pred hhhhHHHHHHHHHHhhCcCCC-cHH-HHHHHHh
No 360
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=29.98 E-value=72 Score=25.47 Aligned_cols=112 Identities=10% Similarity=0.046 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHHhC---CCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcch
Q 043311 103 THEALQLFAQIKDK---GHMPD---VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAK 176 (257)
Q Consensus 103 ~~~a~~~~~~m~~~---g~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~ 176 (257)
-++|.-+|..+.+. .+.++ ....-..+..+.+.-+. +++..+.+.|+.|...++.=++..+++.-.
T Consensus 188 E~daF~~f~~lm~~~~~~y~~~~~~i~~~~~~l~~ll~~~dP----~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p---- 259 (345)
T 2qfz_A 188 EADTYWCMSKLLDGIQDNYTFAQPGIQMKVKMLEELVSRIDE----QVHRHLDQHEVRYLQFAFRWMNNLLMREVP---- 259 (345)
T ss_dssp HHHHHHHHHHHHHTSGGGSSTTCHHHHHHHHHHHHHHHHHCH----HHHHHHHHTTCCHHHHHHHHHHTTTTTTSC----
T ss_pred HHHHHHHHHHHHHccccccccCcHHHHHHHHHHHHHHHHHHH----HHHHHHHHcCCchhhHHHHHHHHHHcccCC----
Confidence 34577777766543 22222 22333344444444443 466777888999988888888888887444
Q ss_pred hHHHHHHHHHHHHhCCCCCCH-HH--HHHHHHHH----HHcCCHHHHHHHHHHH
Q 043311 177 ILGDAQKYLMEMVGKGMRPNA-GT--YTAVFEAF----VRAQKVDEARGLLQQM 223 (257)
Q Consensus 177 ~~~~a~~~~~~m~~~g~~p~~-~~--~~~li~~~----~~~~~~~~a~~~~~~m 223 (257)
++.+..+|+.+...|..... .. .-+++..+ ....+++++..+++.+
T Consensus 260 -~~~~lrlWD~~l~~g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L~~~ 312 (345)
T 2qfz_A 260 -LRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNL 312 (345)
T ss_dssp -HHHHHHHHHHHTTSTTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHHTSC
T ss_pred -HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHcC
Confidence 99999999999988877543 22 23333332 3357888888877764
No 361
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=29.95 E-value=60 Score=22.87 Aligned_cols=141 Identities=12% Similarity=0.095 Sum_probs=66.0
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHH-----HHHHHHHhcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHh
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAV-----KMFDALSKDGLTHEALQLFAQIKDKGHMP---DVVAHTAVIEAYAS 134 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-----~ll~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~li~~~~~ 134 (257)
...+..|+.+.+.. +.+.|..++.. +.+...+..|+.+-+..+++. .+..+ |..-.+. +...+.
T Consensus 44 ~~A~~~~~~~~v~~----Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~---~~~~~~~~~~~g~t~-L~~A~~ 115 (201)
T 3hra_A 44 NIAVHNNDIEIAKA----LIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKH---ATPDLNKHNRYGGNA-LIPAAE 115 (201)
T ss_dssp HHHHHHTCHHHHHH----HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH---SCCCTTCCCTTSCCS-HHHHHH
T ss_pred HHHHHcCCHHHHHH----HHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc---cCcccccccCCCCcH-HHHHHH
Confidence 44555666554444 44455554422 345555667776665555533 22222 2222233 334455
Q ss_pred cCChHHHHHHHHHHHHCC-CC---CCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHH
Q 043311 135 AGQGKEALRVFMRMLASG-VA---PNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTY--TAVFEAFV 208 (257)
Q Consensus 135 ~~~~~~a~~~~~~m~~~g-~~---~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~--~~li~~~~ 208 (257)
.|+.+-+..++ +.| .. .|..-++.+..++.. ++. ...-.++++.+.+.|..++.... .+.+...+
T Consensus 116 ~~~~~~v~~Ll----~~g~~~~~~~~~~g~t~L~~A~~~-~~~----~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~ 186 (201)
T 3hra_A 116 KGHIDNVKLLL----EDGREDIDFQNDFGYTALIEAVGL-REG----NQLYQDIVKLLMENGADQSIKDNSGRTAMDYAN 186 (201)
T ss_dssp TTCHHHHHHHH----HHCCCCTTCCCTTSCCHHHHHHHS-SCC----SHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred cCCHHHHHHHH----HcCCCCcCCCCCCCCCHHHHHHHh-ccc----hhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHH
Confidence 66665443333 333 22 233334455544433 221 12224455566666766654321 23444555
Q ss_pred HcCCHHHHHHHH
Q 043311 209 RAQKVDEARGLL 220 (257)
Q Consensus 209 ~~~~~~~a~~~~ 220 (257)
+.|+.+.+.-++
T Consensus 187 ~~~~~~~~~~Ll 198 (201)
T 3hra_A 187 QKGYTEISKILA 198 (201)
T ss_dssp HHTCHHHHHHHH
T ss_pred HcCCHhHHHHHH
Confidence 667766554443
No 362
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=29.93 E-value=1.2e+02 Score=26.32 Aligned_cols=48 Identities=4% Similarity=-0.081 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 043311 104 HEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLAS 151 (257)
Q Consensus 104 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 151 (257)
+......+++..+=.--+..--.-++..|.+.|-.+.|.++++.|-.+
T Consensus 498 ~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k 545 (570)
T 3f3f_C 498 SAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQ 545 (570)
T ss_dssp HHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 334444444444311112334444555555555555555555555433
No 363
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=29.40 E-value=39 Score=23.74 Aligned_cols=7 Identities=0% Similarity=0.069 Sum_probs=2.8
Q ss_pred CCCHHHH
Q 043311 68 PTDPRNL 74 (257)
Q Consensus 68 ~~~~~~a 74 (257)
.|+.+.+
T Consensus 14 ~G~~~~v 20 (169)
T 4gpm_A 14 NGNKDRV 20 (169)
T ss_dssp TTCHHHH
T ss_pred cCCHHHH
Confidence 3444333
No 364
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=28.58 E-value=26 Score=26.20 Aligned_cols=121 Identities=12% Similarity=-0.008 Sum_probs=64.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCC------
Q 043311 128 VIEAYASAGQGKEALRVFMRMLASGVAPN-------AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMR------ 194 (257)
Q Consensus 128 li~~~~~~~~~~~a~~~~~~m~~~g~~~~-------~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~------ 194 (257)
.|...+..|+.+.+..+++.+.+.|..++ ..-++.+..++.... .|..+.+..+++.-...+..
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~---~g~~~~v~~Ll~~g~~~~~~~~~~~~ 81 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQ---DGVNACIMPLLQIDKDSGNPKPLVNA 81 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCB---TTBCTTHHHHHHHHHHTTCSSCGGGC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccc---cchHHHHHHHHhcCCcccchhhhccc
Confidence 34556778899888888888887776544 344555655553210 13355566566544332210
Q ss_pred ----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH---------------HHHHHHHhhcCCchhhHHhhh
Q 043311 195 ----PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA---------------VKEALIDKRGQGFRGVINILF 255 (257)
Q Consensus 195 ----p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t---------------~~~ll~~~~~~g~~~~~~~l~ 255 (257)
.|..-++. +...+..|+.+.+..++ +.|..++... -.+.+...+..|..+.++-|+
T Consensus 82 ~~~~~d~~g~t~-L~~A~~~g~~~~v~~Ll----~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll 156 (256)
T 2etb_A 82 QCTDEFYQGHSA-LHIAIEKRSLQCVKLLV----ENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLL 156 (256)
T ss_dssp CCCSTTTTTCCH-HHHHHHTTCHHHHHHHH----HTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred ccccccccCCCH-HHHHHHcCCHHHHHHHH----HcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence 11222333 34445677776555544 4565554332 112333444567777777665
Q ss_pred c
Q 043311 256 G 256 (257)
Q Consensus 256 ~ 256 (257)
+
T Consensus 157 ~ 157 (256)
T 2etb_A 157 E 157 (256)
T ss_dssp H
T ss_pred h
Confidence 4
No 365
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=27.11 E-value=52 Score=24.79 Aligned_cols=57 Identities=11% Similarity=0.060 Sum_probs=35.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCC-------CHHHHHHHHHHHHh--cCChHHHHHHHHHH
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGHMP-------DVVAHTAVIEAYAS--AGQGKEALRVFMRM 148 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p-------~~~~~~~li~~~~~--~~~~~~a~~~~~~m 148 (257)
+.+-..++.|+.+.+..+++...+.+... |..-++.|..++.. .|+.+-+.-+++.-
T Consensus 15 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~g 80 (273)
T 2pnn_A 15 RSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVA 80 (273)
T ss_dssp HHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhh
Confidence 44555566788888777777776665433 33456666666643 47776666666553
No 366
>1e5r_A Proline oxidase; oxidoreductase, oxygenase, 2-oxoglutarate dependent oxygenase; 2.30A {Streptomyces SP} SCOP: b.82.2.4 PDB: 1e5s_A
Probab=27.07 E-value=1.5e+02 Score=23.31 Aligned_cols=62 Identities=15% Similarity=-0.004 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 043311 154 APNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARG 218 (257)
Q Consensus 154 ~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 218 (257)
+++..++..+| .+...-. ...+.+....+..+.=.--.|-..+|..|++++.+.|+...+.+
T Consensus 206 ~~~~~~~~~~~-~l~~~~~--~~n~~~i~~~L~k~h~~~~~~~~~~~d~l~~~~~~~gd~~lv~~ 267 (290)
T 1e5r_A 206 PFTAEHRRRIL-SLGQVIE--RENFRDILFLLSKVHYKYDVHPSETYDWLIEISKQAGDEKMVVK 267 (290)
T ss_dssp ECCHHHHHHHH-GGGGTCC--TTTHHHHHHHHHHHHHHEESCTTHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCHHHHHHHH-HHhccch--hhhHHHHHHHHHHhhhhccCChHHHHHHHHHHHHhcCChHHHHH
Confidence 45677777777 4443222 33465666666666522124567788888888888888654444
No 367
>2ii2_A Alpha-11 giardin; helix-turn-helix, metal binding protein; 1.10A {Giardia intestinalis} PDB: 2iic_A
Probab=26.77 E-value=2.3e+02 Score=22.23 Aligned_cols=159 Identities=11% Similarity=0.066 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHhCCCCCcHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCCCCH-----H--HHHHHHHHHHhcCCh----
Q 043311 72 RNLQEIFHKMRTEGLTNNAVKMFDALSKDGL--THEALQLFAQIKDKGHMPDV-----V--AHTAVIEAYASAGQG---- 138 (257)
Q Consensus 72 ~~a~~~~~~m~~~~~~p~~~~ll~~~~~~~~--~~~a~~~~~~m~~~g~~p~~-----~--~~~~li~~~~~~~~~---- 138 (257)
..|..+.+.|.. . .+...|+..++...+ +....+.|..+-...+.-|+ . .|.-++.++....+.
T Consensus 79 ~DA~~L~~A~kg--~-tde~~lieIL~~Rs~~~l~~I~~aY~~~y~~~Le~di~~e~sg~~~~~~ll~~ll~~~R~e~~~ 155 (310)
T 2ii2_A 79 ARVNVIKKAMKN--V-NDFRAIHDVVLIATPDERLKLAQAYKEKTGNDLLQDFVDQIPLTSAASYLCHLAIRENRTPRGS 155 (310)
T ss_dssp HHHHHHHHHHHS--S-CCHHHHHHHHHSCCHHHHHHHHHHHHHHHSSCHHHHHHHHCCSCSHHHHHHHHHHHCCCCCCSC
T ss_pred HHHHHHHHHhhC--C-CcHHHHHHHHHcCCHHHHHHHHHHHHHHHCcCHHHHHHhhcCCchHHHHHHHHHHhccCCcchH
Confidence 345566666654 3 666778888887653 34456666665443221111 1 467777777775543
Q ss_pred --HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCC------CC-CHHHHHHHHH--HH
Q 043311 139 --KEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGM------RP-NAGTYTAVFE--AF 207 (257)
Q Consensus 139 --~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~------~p-~~~~~~~li~--~~ 207 (257)
..|..+++.+... ...|..++..++.. + . ..++....+.|+.+-...+ .. +...-.+|+. .|
T Consensus 156 a~~DA~~L~~A~~~~-~Gtde~~~i~Il~~--R--s--~~~L~~i~~~Y~~~~g~~l~~~I~~e~~sG~~~~~Ll~iv~~ 228 (310)
T 2ii2_A 156 VASDAEVLKHNLIDA-DEPDHEAVVRLIIT--S--T--ADEYKEINHRFEVLTGKSVQEAIETRYADKENARGLCIAHYY 228 (310)
T ss_dssp HHHHHHHHHHHHTTS-SSCCHHHHHHHHHH--C--C--HHHHHHHHHHHHHHHSSCHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcc-cCCCHHHHHHHHHh--C--C--HHHHHHHHHHHHHHhCCCHHHHHHHHhcCccHHHHHHHHHHH
Confidence 4788888888753 34577766666531 1 1 2335566666655543222 11 1111122222 12
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043311 208 VRAQKVDEARGLLQQMKAKGFVPDEKAVKEALI 240 (257)
Q Consensus 208 ~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 240 (257)
++..-.--|..+++-|...|-..|..++..++.
T Consensus 229 ~~~~~~~fA~~L~~Am~g~Gt~td~~~l~Riv~ 261 (310)
T 2ii2_A 229 NLAPARAVAYAFHSAVETQNDDMAYEQAARITG 261 (310)
T ss_dssp HHCHHHHHHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhCCCCCCcHHHHHHHHH
Confidence 333334456666666653332267888888776
No 368
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=25.30 E-value=2.5e+02 Score=22.07 Aligned_cols=149 Identities=8% Similarity=0.081 Sum_probs=77.3
Q ss_pred CCCCcHHHHHHHHHhcCChHHHHHHHHHHHhC-----CCCCCHHHHHHH---HHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 043311 85 GLTNNAVKMFDALSKDGLTHEALQLFAQIKDK-----GHMPDVVAHTAV---IEAYASAGQGKEALRVFMRMLASGVAPN 156 (257)
Q Consensus 85 ~~~p~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----g~~p~~~~~~~l---i~~~~~~~~~~~a~~~~~~m~~~g~~~~ 156 (257)
|..+-...+...+.-.-+.++|.-+|..+.+. -+.|+....... +..+.+.-+. +++..+.+.|+.|.
T Consensus 147 gY~QGm~~i~a~ll~~~~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~p----~L~~hL~~~~i~~~ 222 (331)
T 3qye_A 147 GYCQGLSFVAGILLLHMSEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYHR----DLYNHLEEHEIGPS 222 (331)
T ss_dssp SSCTTHHHHHHHHHTTSCHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHCH----HHHHHHHHTTCCGG
T ss_pred cccccHHHHHHHHHHHhhHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHHH----HHHHHHHHcCCChH
Confidence 44444433333333333566777777776543 123443222222 2223332222 46677777788887
Q ss_pred HHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHCCCCCCH
Q 043311 157 AYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAF----VRAQKVDEARGLLQQMKAKGFVPDE 232 (257)
Q Consensus 157 ~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~----~~~~~~~~a~~~~~~m~~~g~~p~~ 232 (257)
..++.=++..+++.-. ++.+..+|+.+...|...-....-+++..+ .+..+.++...+++.... ..+.
T Consensus 223 ~~~~~W~l~lF~~~lp-----~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~p---~~~~ 294 (331)
T 3qye_A 223 LYAAPWFLTMFASQFP-----LGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLP---NLGL 294 (331)
T ss_dssp GTSHHHHHSTTTTTSC-----HHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTTT---CCCH
T ss_pred HHHHHHHHHHhhhhCC-----HHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCC---CCCH
Confidence 7777777777766333 888888888877766442112222233222 223466666666665221 1344
Q ss_pred HHHHHHHHHhhcC
Q 043311 233 KAVKEALIDKRGQ 245 (257)
Q Consensus 233 ~t~~~ll~~~~~~ 245 (257)
.....++.....-
T Consensus 295 ~di~~li~~A~~l 307 (331)
T 3qye_A 295 VQMEKTINQVFEM 307 (331)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC
Confidence 5555666544333
No 369
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=24.86 E-value=2.2e+02 Score=21.36 Aligned_cols=86 Identities=13% Similarity=0.134 Sum_probs=57.8
Q ss_pred ccccCCCCHHHHHHHHHHHHh--CCCCC-------cHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRT--EGLTN-------NAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYA 133 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~--~~~~p-------~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 133 (257)
..+....++++|..+.++..+ .+..+ .....+..-.....-.-+..+.+++.. .++...-...+..+.
T Consensus 26 Dv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~L~ 102 (235)
T 2d2s_A 26 DIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTENMI 102 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHH
Confidence 466778999999999987775 23332 112344444444434445555566644 456777778889999
Q ss_pred hcCChHHHHHHHHHHHHC
Q 043311 134 SAGQGKEALRVFMRMLAS 151 (257)
Q Consensus 134 ~~~~~~~a~~~~~~m~~~ 151 (257)
+-|+-++|.++|-+....
T Consensus 103 rLg~~~~A~~lfL~~rs~ 120 (235)
T 2d2s_A 103 KLGLPEQALDLFLQNRSN 120 (235)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCChhHHHHHHHHHHHH
Confidence 999999999999887643
No 370
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=24.48 E-value=1.8e+02 Score=20.17 Aligned_cols=52 Identities=13% Similarity=0.184 Sum_probs=30.9
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 043311 102 LTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP 155 (257)
Q Consensus 102 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~ 155 (257)
..+.+..+.+.+.+.|+.-|...-...+....+.| .....+-.++.++||..
T Consensus 45 ~~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI~~ 96 (159)
T 3c1d_A 45 TAEDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGISR 96 (159)
T ss_dssp CHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTCCH
T ss_pred CHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCCCH
Confidence 34455666666666666655555566666655544 24455666666666654
No 371
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=24.35 E-value=2.8e+02 Score=22.39 Aligned_cols=60 Identities=13% Similarity=0.247 Sum_probs=38.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCCC
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGHMPD----VVAHTAVIEAYASAGQ--GKEALRVFMRMLASGVAPN 156 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~~~ 156 (257)
++|.-|...|++++|...++++.. |+ ..++..+..++ ..++ .+.+-.++..+...|+-+.
T Consensus 17 ~ii~EY~~~~D~~Ea~~~l~eL~~----p~~~~~~~v~~~i~~aL-er~~~~re~~~~LL~~L~~~~~ls~ 82 (364)
T 3l6a_A 17 TVVTEYLNSGNANEAVNGVREMRA----PKHFLPEMLSKVIILSL-DRSDEDKEKASSLISLLKQEGIATS 82 (364)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHTC----CGGGHHHHHHHHHHHHH-TSCHHHHHHHHHHHHHHHHTTSSCH
T ss_pred HHHHHHHhCCCHHHHHHHHHHhCC----chhhHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHHHCCCCCH
Confidence 588999999999999999998864 43 23444444444 3332 2556666667766655433
No 372
>4evf_A Alpha-1 giardin, giardin subunit alpha-1; annexin, calcium-binding protein, membrane-binding protein, binding protein; 1.90A {Giardia intestinalis} PDB: 4evh_A
Probab=24.33 E-value=2.5e+02 Score=21.80 Aligned_cols=152 Identities=9% Similarity=0.056 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHhCCCCCcHHHHHHHHHhcCChH--HHHHHHHHHHhCCCCC----C--HHHHHHHHHHHHhcCChHHHHH
Q 043311 72 RNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTH--EALQLFAQIKDKGHMP----D--VVAHTAVIEAYASAGQGKEALR 143 (257)
Q Consensus 72 ~~a~~~~~~m~~~~~~p~~~~ll~~~~~~~~~~--~a~~~~~~m~~~g~~p----~--~~~~~~li~~~~~~~~~~~a~~ 143 (257)
+.|..+.+.|. | .|..+|+..++.....+ .....|..+-...+.- . ...|..++.++....-...|..
T Consensus 6 ~da~~L~~A~k--G--tde~~li~IL~~rs~~qr~~I~~~Y~~~yg~~L~~~lk~el~sG~f~~~l~~l~~~~~~~dA~~ 81 (295)
T 4evf_A 6 DIANELKQAID--A--KDEVQIAFIASEYSAESREKIAKAYVASYGKELPDDIKKALKGGSEESLLMDLFSDRHEVRAQH 81 (295)
T ss_dssp HHHHHHHHHHH--T--TCHHHHHHHHHTSCHHHHHHHHHHHHHHHSSCHHHHHHHHSCCSHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHc--C--CCHHHHHHHHhCCCHHHHHHHHHHHHHHHCcCHHHHHHhhccCCCHHHHHHHHccCchHHHHHH
Confidence 45666667776 5 57778898888775433 3445565554332111 1 1235556666655444466777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHHcCC----
Q 043311 144 VFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPN-------AGTYTAVFEAFVRAQK---- 212 (257)
Q Consensus 144 ~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~-------~~~~~~li~~~~~~~~---- 212 (257)
+.+.|.. . .|..++.-++ +... ..++....+.|+.+-...+.-+ ...|.-++-+.++..+
T Consensus 82 L~~A~kg--~-tde~~lieIL---~~Rs---~~~l~~I~~~Y~~~y~~~Le~di~~e~~~sG~~~~~L~~ll~~~r~e~~ 152 (295)
T 4evf_A 82 IRDALSG--R-NDHMAFFDTV---ILCT---PEDWHETVAAYTRMFKKPLVEDFMKDVGRKEDWCLLMEKWMAHERVSRP 152 (295)
T ss_dssp HHHHHHS--S-CCHHHHHHHH---TSCC---HHHHHHHHHHHHHHHSSCHHHHHHHHHCSSSHHHHHHHHHHHTCCCCCS
T ss_pred HHHHhhC--C-CCHHHHHHHH---HcCC---HHHHHHHHHHHHHhccccHHHHHHhhcccCCcHHHHHHHHHhcccccCc
Confidence 8888865 3 5665554444 3211 2235556666665543322111 1234445555555432
Q ss_pred ---HHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043311 213 ---VDEARGLLQQMKAKGFVPDEKAVKEALI 240 (257)
Q Consensus 213 ---~~~a~~~~~~m~~~g~~p~~~t~~~ll~ 240 (257)
-..|..+++-|.. .|..++..++.
T Consensus 153 ~~~~~dA~~L~~A~~~----tde~~li~Il~ 179 (295)
T 4evf_A 153 GSPEDEAQRLDQAFDQ----KNTAYLIDFFG 179 (295)
T ss_dssp SCHHHHHHHHHHHHHT----TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHhccC----CCHHHHhHHHH
Confidence 4567777776654 67777777664
No 373
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=24.23 E-value=90 Score=20.96 Aligned_cols=47 Identities=13% Similarity=-0.029 Sum_probs=29.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 043311 94 FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALR 143 (257)
Q Consensus 94 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 143 (257)
|.....+++.+-|.++++.+.+.| +-..|.+++..|-..=+++-+++
T Consensus 39 ietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLE 85 (125)
T 3qil_A 39 MQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLE 85 (125)
T ss_dssp HHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHH
Confidence 444455666677777777766654 56666666666666655555544
No 374
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=24.22 E-value=50 Score=22.67 Aligned_cols=16 Identities=13% Similarity=0.200 Sum_probs=6.6
Q ss_pred hhhhcccCCCCccchh
Q 043311 31 LQRSLSSSSDQPTKKY 46 (257)
Q Consensus 31 ~~~~~~~~~~~~~~~~ 46 (257)
+...+..++.+..+.+
T Consensus 18 l~~A~~~g~~~~v~~L 33 (169)
T 2y1l_E 18 LLEAARAGRDDEVRIL 33 (169)
T ss_dssp HHHHHHHTCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHH
Confidence 3333444444444433
No 375
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=23.98 E-value=4.3e+02 Score=24.37 Aligned_cols=149 Identities=9% Similarity=0.081 Sum_probs=84.3
Q ss_pred ccccCCCCHH---HHHHHHHHHHhC----CCCCcHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 043311 63 VVDEEPTDPR---NLQEIFHKMRTE----GLTNNAVKMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASA 135 (257)
Q Consensus 63 ~~~~~~~~~~---~a~~~~~~m~~~----~~~p~~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 135 (257)
...|..|+.+ .|.+.|+..... .+.|+....+.+..- |..++-..+++..++. .+..--+.++.+++-.
T Consensus 688 ~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~~lr~~vy~~~~-g~~~~~~~l~~~y~~~---~~~~ek~~ll~aL~c~ 763 (897)
T 2xdt_A 688 LLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVFAVGA-QSTEGWDFLYSKYQFS---LSSTEKSQIEFALCRT 763 (897)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCHHHHHHHHHHHT-TSHHHHHHHHHHHTTC---CCHHHHHHHHHHHTTC
T ss_pred HHHHhcCCHHHHHHHHHHHHHHhcCCCcCCCCcchhhhEEEEec-CCHHHHHHHHHHHHcc---CCHHHHHHHHHHhccC
Confidence 4455666544 466677766553 345565555555554 7665555566666543 3555667899999999
Q ss_pred CChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHH----HHhCCCCCCHHHHHHHHHHHHHc
Q 043311 136 GQGKEALRVFMRMLASG-VAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLME----MVGKGMRPNAGTYTAVFEAFVRA 210 (257)
Q Consensus 136 ~~~~~a~~~~~~m~~~g-~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~----m~~~g~~p~~~~~~~li~~~~~~ 210 (257)
.+.+...++++.....+ +++ .... .++.+.+... .| .+.+++.+.+ +.+. +..+..++..+|......
T Consensus 764 ~~~~~l~~~L~~~~~~~~i~~-qd~~-~~~~~v~~n~---~g-~~~~~~~~~~n~~~i~~~-~~~~~~~~~~~i~~~~~~ 836 (897)
T 2xdt_A 764 QNKEKLQWLLDESFKGDKIKT-QEFP-QILTLIGRNP---VG-YPLAWQFLRKNWNKLVQK-FELGSSSIAHMVMGTTNQ 836 (897)
T ss_dssp CCHHHHHHHHHHHHHCSSSCG-GGHH-HHHHHHHTST---TT-HHHHHHHHHHTHHHHHHH-HCTTCHHHHHHHHHTTTT
T ss_pred CCHHHHHHHHHHHhCCCCCcH-HHHH-HHHHHHHcCh---hh-HHHHHHHHHHHHHHHHHH-hCCCchHHHHHHHHHHhc
Confidence 99999989888877543 443 2222 3334443311 11 3555555443 3221 222345667777765442
Q ss_pred ----CCHHHHHHHHHH
Q 043311 211 ----QKVDEARGLLQQ 222 (257)
Q Consensus 211 ----~~~~~a~~~~~~ 222 (257)
.++++..++|+.
T Consensus 837 ~~t~~~~~~~~~f~~~ 852 (897)
T 2xdt_A 837 FSTRTRLEEVKGFFSS 852 (897)
T ss_dssp CCSHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHh
Confidence 345556666655
No 376
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=23.72 E-value=62 Score=22.64 Aligned_cols=32 Identities=3% Similarity=0.119 Sum_probs=17.4
Q ss_pred ChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHH
Q 043311 102 LTHEALQLFAQIKDKGHM-PDVVAHTAVIEAYA 133 (257)
Q Consensus 102 ~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~ 133 (257)
.+++|.+.+..|++.-+. -.+..||..|..+-
T Consensus 73 ~y~KA~ecL~~lR~~~i~~~ep~~yN~Fl~~LK 105 (152)
T 1rw2_A 73 YFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQ 105 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccChHHHHHHHHHHH
Confidence 455666666666654332 14455666665553
No 377
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=23.60 E-value=1.9e+02 Score=20.05 Aligned_cols=72 Identities=10% Similarity=0.098 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHH
Q 043311 124 AHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGT 199 (257)
Q Consensus 124 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 199 (257)
..+.+|.=|...|+.++|.+.++++..- ......++.++..++-+.++ ...+.+..++..+...|+-+....
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p-~f~~e~V~~~i~~alE~~~~---~~re~~~~LL~~L~~~~~is~~q~ 82 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVP-HFHHELVYEAIVMVLESTGE---SAFKMILDLLKSLWKSSTITIDQM 82 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCG-GGHHHHHHHHHHHHHHCCSS---HHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCC-cchHHHHHHHHHHHHcCCCh---HHHHHHHHHHHHHHHCCCcCHHHH
Confidence 4567888899999999999999998521 11123444455555544222 225678888888887766554443
No 378
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=23.53 E-value=1.5e+02 Score=18.98 Aligned_cols=63 Identities=6% Similarity=-0.043 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 043311 139 KEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAV 203 (257)
Q Consensus 139 ~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 203 (257)
-.|.++.++....|+.|+..+..-++..|...+- +...+-.-|-.|. ....|..|+..+.+.+
T Consensus 26 Vsae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-da~e~VeeWmAFs-ts~~g~~pT~enL~~F 88 (101)
T 2keb_A 26 ASAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-NEEGMVGELIAFC-TSTHKVGLTSEILNSF 88 (101)
T ss_dssp CCHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-CHHHHHHHHHHHH-HHHTCSBCCHHHHHHH
T ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHH-HhcCCCCCCHHHHHHH
Confidence 3455566666666777777777777776665332 1111111122221 1245667776665544
No 379
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=23.52 E-value=68 Score=21.48 Aligned_cols=140 Identities=14% Similarity=0.083 Sum_probs=67.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHH
Q 043311 92 KMFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA---YTYAVLIKGLA 168 (257)
Q Consensus 92 ~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~---~t~~~ll~~~~ 168 (257)
+.+...++.|+.+.+..+++.-. .+..+..-++.+.. .+..|+.+- ++.+.+.|..++. .-.+.+..++
T Consensus 4 ~~L~~A~~~g~~~~v~~Ll~~g~--~~~~~~~g~t~L~~-A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~- 75 (153)
T 1awc_B 4 KKLLEAARAGQDDEVRILMANGA--PFTTDWLGTSPLHL-AAQYGHFST----TEVLLRAGVSRDARTKVDRTPLHMAA- 75 (153)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTC--CCCCCTTCCCHHHH-HHHHTCHHH----HHHHHTTTCCTTCCCTTCCCHHHHHH-
T ss_pred HHHHHHHHcCCHHHHHHHHHcCC--CCCcCCCCCCHHHH-HHHcCCHHH----HHHHHHcCCCCCCCCCCCCCHHHHHH-
Confidence 34445566788777666655421 12233333444444 445566544 4455556655432 2233444433
Q ss_pred hccCCcchhHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHhhc
Q 043311 169 AAADGNAKILGDAQKYLMEMVGKGMRPNAGT--YTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA--VKEALIDKRG 244 (257)
Q Consensus 169 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t--~~~ll~~~~~ 244 (257)
..++ .+ +++.+.+.|..++... -.+.+...+..|+.+.+. .+.+.|..++... -.+.+.....
T Consensus 76 ~~~~-----~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~----~Ll~~ga~~~~~~~~g~t~l~~A~~ 142 (153)
T 1awc_B 76 SEGH-----AN----IVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVE----LLIKYGADVHTQSKFCKTAFDISID 142 (153)
T ss_dssp HHTC-----HH----HHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHH----HHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HcCh-----HH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHH----HHHHcCCCccccCCCCCCHHHHHHH
Confidence 3222 43 4445556676665432 223444455677775444 4445565554221 1123344455
Q ss_pred CCchhhHH
Q 043311 245 QGFRGVIN 252 (257)
Q Consensus 245 ~g~~~~~~ 252 (257)
.|..+.++
T Consensus 143 ~~~~~i~~ 150 (153)
T 1awc_B 143 NGNEDLAE 150 (153)
T ss_dssp TTCHHHHH
T ss_pred cCCHHHHH
Confidence 56655543
No 380
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=22.84 E-value=2e+02 Score=20.19 Aligned_cols=148 Identities=13% Similarity=0.076 Sum_probs=79.4
Q ss_pred HHhcCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhccC
Q 043311 97 LSKDGLTHEALQLFAQIKDKGHM-PDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNA---YTYAVLIKGLAAAAD 172 (257)
Q Consensus 97 ~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~---~t~~~ll~~~~~~~~ 172 (257)
.++.|+++....++.. +.. .+...-.+.|...+..|+.+.-.++.+-+.+.|..+|. .-++.|.-++... .
T Consensus 13 Aa~~g~~~~~~~l~~~----~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~-~ 87 (186)
T 3t8k_A 13 AAMLGTYEDFLELFEK----GYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGG-G 87 (186)
T ss_dssp HHHHSCHHHHHHHHHH----SSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHC-T
T ss_pred HHHcCCHHHHHHHHhc----CcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC-C
Confidence 3567887776555542 221 11111223444455566666667777778888876655 3344555544431 1
Q ss_pred CcchhHHHHHHHHHHHHhCCCCCCHHHHH---HHHHHHHHcCCH-HHHHHHHHHHHH-CCCCCCHHHHH--HHHHHhhcC
Q 043311 173 GNAKILGDAQKYLMEMVGKGMRPNAGTYT---AVFEAFVRAQKV-DEARGLLQQMKA-KGFVPDEKAVK--EALIDKRGQ 245 (257)
Q Consensus 173 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~---~li~~~~~~~~~-~~a~~~~~~m~~-~g~~p~~~t~~--~ll~~~~~~ 245 (257)
.......++.+.+.+.|..++..... +.+...+..+.. ..-..+++.+.+ .|..++..... +-+....+.
T Consensus 88 ---~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~ 164 (186)
T 3t8k_A 88 ---NDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRC 164 (186)
T ss_dssp ---TCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTT
T ss_pred ---cchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHc
Confidence 11444566777777788888776531 233333333322 455667888887 78887764321 223333444
Q ss_pred CchhhHH
Q 043311 246 GFRGVIN 252 (257)
Q Consensus 246 g~~~~~~ 252 (257)
|..+.++
T Consensus 165 ~~~~~v~ 171 (186)
T 3t8k_A 165 QKPIALK 171 (186)
T ss_dssp TCHHHHH
T ss_pred CCHHHHH
Confidence 5444433
No 381
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=22.83 E-value=69 Score=23.78 Aligned_cols=165 Identities=10% Similarity=-0.001 Sum_probs=74.0
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCCCcHH-----HHHHHHHhcCChHHHHHHHHHHHhCCC-C---CCHHHHHHHHHHHH
Q 043311 63 VVDEEPTDPRNLQEIFHKMRTEGLTNNAV-----KMFDALSKDGLTHEALQLFAQIKDKGH-M---PDVVAHTAVIEAYA 133 (257)
Q Consensus 63 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-----~ll~~~~~~~~~~~a~~~~~~m~~~g~-~---p~~~~~~~li~~~~ 133 (257)
...+..|+.+.+..++ +.|..++.. +.+...+..|+.+-+ +.+.+.|. . .+..-++.|..+ +
T Consensus 62 ~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~~~~~~~~~~~~g~t~L~~A-~ 132 (253)
T 1yyh_A 62 HLAARYSRSDAAKRLL----EASADANIQDNMGRTPLHAAVSADAQGVF----QILIRNRATDLDARMHDGTTPLILA-A 132 (253)
T ss_dssp HHHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHHTCHHHH----HHHHHSTTSCTTCCCTTCCCHHHHH-H
T ss_pred HHHHHcCCHHHHHHHH----HcCCCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHHcCCCCccccCCCCCcHHHHH-H
Confidence 4556677766555444 445544422 344455556665443 33444432 1 222333444443 4
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHH
Q 043311 134 SAGQGKEALRVFMRMLASGVAPNA---YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGT--YTAVFEAFV 208 (257)
Q Consensus 134 ~~~~~~~a~~~~~~m~~~g~~~~~---~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~ 208 (257)
..|+.+-+ +.+.+.|..++. .-++.+..+ +..|+ .+ +++.+.+.|..++... -.+.+...+
T Consensus 133 ~~~~~~~v----~~Ll~~g~~~~~~d~~g~t~L~~A-~~~~~-----~~----~v~~Ll~~ga~~~~~~~~g~tpL~~A~ 198 (253)
T 1yyh_A 133 RLAVEGML----EDLINSHADVNAVDDLGKSALHWA-AAVNN-----VD----AAVVLLKNGANKDMQNNREETPLFLAA 198 (253)
T ss_dssp HHTCSSHH----HHHHHTTCCTTCBCTTSCBHHHHH-HHHTC-----HH----HHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HcChHHHH----HHHHHcCCCCCCcCCCCCCHHHHH-HHcCC-----HH----HHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence 45555443 444445554432 223333333 33222 44 3444445565554321 123344445
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHhhcCCchhhHHhh
Q 043311 209 RAQKVDEARGLLQQMKAKGFVPDEKA--VKEALIDKRGQGFRGVINIL 254 (257)
Q Consensus 209 ~~~~~~~a~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~g~~~~~~~l 254 (257)
..|+.+.+. .+.+.|..++... -.+-+......|..+.+.-+
T Consensus 199 ~~~~~~~v~----~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l 242 (253)
T 1yyh_A 199 REGSYETAK----VLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 242 (253)
T ss_dssp HHTCHHHHH----HHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred HCCCHHHHH----HHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHH
Confidence 667765444 4444555443211 11223334455655555444
No 382
>1w3w_A Annexin A8; coagulation, annexin family, calcium and phospholipid binding proteins; 1.99A {Homo sapiens} PDB: 1w45_A
Probab=22.78 E-value=2.9e+02 Score=21.93 Aligned_cols=159 Identities=16% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCCCcHHHHHHHHHhcCChHH--HHHHHHHHHhCCCCCCHHH-----HHHHHHHHHhcCChHHHHHH
Q 043311 72 RNLQEIFHKMRTEGLTNNAVKMFDALSKDGLTHE--ALQLFAQIKDKGHMPDVVA-----HTAVIEAYASAGQGKEALRV 144 (257)
Q Consensus 72 ~~a~~~~~~m~~~~~~p~~~~ll~~~~~~~~~~~--a~~~~~~m~~~g~~p~~~~-----~~~li~~~~~~~~~~~a~~~ 144 (257)
..|..+.+.| .|...+..+|+..++.....+. ..+.|..+-...+.-++.. |..+|-++...---..|..+
T Consensus 25 ~DA~~L~kA~--kG~GtdE~~lieIL~~Rs~~q~~~I~~aY~~~yg~~L~~dlkse~sG~f~~ll~~l~~~~~~~DA~~L 102 (327)
T 1w3w_A 25 PDAETLYKAM--KGIGTNEQAIIDVLTKRSNTQRQQIAKSFKAQFGKDLTETLKSELSGKFERLIVALMYPPYRYEAKEL 102 (327)
T ss_dssp HHHHHHHHHH--SSSSCCHHHHHHHHTTSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHSCTTHHHHHHH
T ss_pred HHHHHHHHHh--cCCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHCcCHHHHHHHHcCCcHHHHHHHhcCCHHHHHHHHH
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHH-----HHHHHHHHHHcCCHH-----
Q 043311 145 FMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGT-----YTAVFEAFVRAQKVD----- 214 (257)
Q Consensus 145 ~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-----~~~li~~~~~~~~~~----- 214 (257)
.+.|. |...|..++.-++-.... .++....+.|+.+-...+.-+... |.-++-+.++..+.+
T Consensus 103 ~~A~~--g~Gtde~~lieIL~tRs~------~ql~~i~~~Y~~~yg~sLe~dI~~e~sG~~~~~L~~lv~~~r~~~~~~v 174 (327)
T 1w3w_A 103 HDAMK--GLGTKEGVIIEILASRTK------NQLREIMKAYEEDYGSSLEEDIQADTSGYLERILVCLLQGSRDDVSSFV 174 (327)
T ss_dssp HHHHH--SSSCCHHHHHHHHHHSCH------HHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHSCCCCCCCSCC
T ss_pred HHHhh--ccCCCHHHHHHHHHhCCH------HHHHHHHHHHHHHhCccHHHHHhhccCchHHHHHHHHHHhccCCccccc
Q ss_pred -------HHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043311 215 -------EARGLLQQMKAKGFVPDEKAVKEALID 241 (257)
Q Consensus 215 -------~a~~~~~~m~~~g~~p~~~t~~~ll~~ 241 (257)
+|..+++-| +.|.-.|..++..++..
T Consensus 175 d~~~a~~DA~~L~~A~-~~~~GTde~~lirIl~t 207 (327)
T 1w3w_A 175 DPALALQDAQDLYAAG-EKIRGTDEMKFITILCT 207 (327)
T ss_dssp CHHHHHHHHHHHHHHH-HCSSSCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHh-hCcCCCcHhHhhHHHhc
No 383
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=22.03 E-value=2.9e+02 Score=21.67 Aligned_cols=148 Identities=9% Similarity=0.038 Sum_probs=92.6
Q ss_pred CHHHHHHHHHHHHhCC-----CCCcHHH------HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 043311 70 DPRNLQEIFHKMRTEG-----LTNNAVK------MFDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQG 138 (257)
Q Consensus 70 ~~~~a~~~~~~m~~~~-----~~p~~~~------ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 138 (257)
+-+.|..++..+...- ..|+... .+..+.+..+ -+++..+.+.|+.|...++.=++..|+..=.+
T Consensus 164 ~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~----p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~ 239 (331)
T 3qye_A 164 SEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYH----RDLYNHLEEHEIGPSLYAAPWFLTMFASQFPL 239 (331)
T ss_dssp CHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCH
T ss_pred hHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCChHHHHHHHHHHHhhhhCCH
Confidence 5667888888877532 2333222 2333333322 46788889999999999999999999998889
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHH---H
Q 043311 139 KEALRVFMRMLASGVAPNAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVD---E 215 (257)
Q Consensus 139 ~~a~~~~~~m~~~g~~~~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~---~ 215 (257)
+.+..+|+.+...|...-.....+++..+...- .....+++..++++..... .+......+|+-........ +
T Consensus 240 ~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~l-l~~~~~~~il~~l~~~~p~---~~~~di~~li~~A~~l~~s~~l~~ 315 (331)
T 3qye_A 240 GFVARVFDMIFLQGTEVIFKVALSLLGSHKPLI-LQHENLETIVDFIKSTLPN---LGLVQMEKTINQVFEMDIAKQLQA 315 (331)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHH-HTCCSHHHHHHHHHHTTTC---CCHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHhhCCC---CCHHHHHHHHHHHHhCCchHHHHH
Confidence 999999999998876532222333333322100 0122378888888774432 46677777876666665543 3
Q ss_pred HHHHHHHHHH
Q 043311 216 ARGLLQQMKA 225 (257)
Q Consensus 216 a~~~~~~m~~ 225 (257)
-+.=|..+.+
T Consensus 316 ~e~ey~~l~~ 325 (331)
T 3qye_A 316 YEVEYHVLQE 325 (331)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 3333444443
No 384
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=21.75 E-value=13 Score=27.14 Aligned_cols=144 Identities=10% Similarity=0.057 Sum_probs=72.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC------CHHHHHHHHHHH
Q 043311 94 FDALSKDGLTHEALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP------NAYTYAVLIKGL 167 (257)
Q Consensus 94 l~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~------~~~t~~~ll~~~ 167 (257)
+...++.|+.+.+..+++.-.......|..-++.|.. .+..|+.+ +++.+.+.|-.+ |..-++.+..++
T Consensus 6 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~-A~~~~~~~----~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~ 80 (228)
T 2dzn_A 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHW-SVSFQAHE----ITSFLLSKMENVNLDDYPDDSGWTPFHIAC 80 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHH-HHHTTCHH----HHHHHHHTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHH-HHHcCCHH----HHHHHHhccccccccccCCCCCCCHHHHHH
Confidence 4455678887777776665333222234444455544 44566654 445556666232 233345555544
Q ss_pred HhccCCcchhHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHH
Q 043311 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAG----TYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA--VKEALID 241 (257)
Q Consensus 168 ~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t--~~~ll~~ 241 (257)
.. |+ .+ +++.+.+.|..++.. .-.+.+...+..|+.+.+..++ +.|..++... -.+.+..
T Consensus 81 ~~-~~-----~~----~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll----~~g~~~~~~~~~g~t~L~~ 146 (228)
T 2dzn_A 81 SV-GN-----LE----VVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLI----ENGASVRIKDKFNQIPLHR 146 (228)
T ss_dssp HH-CC-----HH----HHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH----HTTCCSCCCCTTSCCHHHH
T ss_pred Hc-CC-----HH----HHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHH----HcCCCccccCCCCCCHHHH
Confidence 32 22 43 455555555222221 1223344555777776555444 4566554221 1123444
Q ss_pred hhcCCchhhHHhhhc
Q 043311 242 KRGQGFRGVINILFG 256 (257)
Q Consensus 242 ~~~~g~~~~~~~l~~ 256 (257)
.+..|..+.++-+++
T Consensus 147 A~~~~~~~~v~~Ll~ 161 (228)
T 2dzn_A 147 AASVGSLKLIELLCG 161 (228)
T ss_dssp HHHTTCHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHh
Confidence 556778887777654
No 385
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=21.73 E-value=5.5e+02 Score=25.13 Aligned_cols=71 Identities=6% Similarity=0.020 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcCCchhh
Q 043311 177 ILGDAQKYLMEMVGKGMRP-NAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKAVKEALIDKRGQGFRGV 250 (257)
Q Consensus 177 ~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 250 (257)
..+...+.|.++.+- +.+ |.......+....+.+++-.|++++.++.+.. |+...|..++..+..-|...-
T Consensus 1264 ~~~~~~~~~~el~k~-~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~k--~~~~~~~~~~~~~~~l~w~h~ 1335 (1354)
T 3lxu_X 1264 SLAEINELYTEIIKF-VDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEEK--RTRDHFVELAAINGALGHEHI 1335 (1354)
T ss_dssp GHHHHHHHHHHHTTS-SCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHT--CCHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHHhh-cccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHcCCHHH
Confidence 355666777777754 222 33333334444457899999999999998875 788888888888777666443
No 386
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=21.70 E-value=1e+02 Score=23.82 Aligned_cols=19 Identities=11% Similarity=0.216 Sum_probs=10.8
Q ss_pred HHHHHHhcCChHHHHHHHH
Q 043311 93 MFDALSKDGLTHEALQLFA 111 (257)
Q Consensus 93 ll~~~~~~~~~~~a~~~~~ 111 (257)
-+-..++.|+.+....++.
T Consensus 27 ~L~~A~~~g~~~~v~~ll~ 45 (351)
T 3utm_A 27 ELLEAARSGNEEKLMALLT 45 (351)
T ss_dssp HHHHHHHHTCHHHHHHHCC
T ss_pred hHHHHHHcCCHHHHHHHHH
Confidence 3444455677666666554
No 387
>1jog_A Hypothetical protein HI0074; structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: a.24.16.2
Probab=21.36 E-value=1.7e+02 Score=20.12 Aligned_cols=39 Identities=8% Similarity=0.133 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHh-CCCCC---CHHHHHHHHHHHHHcCCHHHH
Q 043311 178 LGDAQKYLMEMVG-KGMRP---NAGTYTAVFEAFVRAQKVDEA 216 (257)
Q Consensus 178 ~~~a~~~~~~m~~-~g~~p---~~~~~~~li~~~~~~~~~~~a 216 (257)
++.++++.....+ .|+.| +..++.-+++...+.|-++..
T Consensus 54 ~Elawk~~k~~L~~~g~~~~~~~~~s~rd~~r~a~~~GlI~d~ 96 (146)
T 1jog_A 54 YELSLKMMKRQLQQDAINTDDIGAYGFKDILREALRFGLIGDM 96 (146)
T ss_dssp HHHHHHHHHHHHHHHTCSCCCTTSCCHHHHHHHHHHTTSCSCH
T ss_pred HHHHHHHHHHHHHHcCCCccccCCCCHHHHHHHHHHcCCCCcH
Confidence 4444444444332 33332 244555555555555544433
No 388
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=21.35 E-value=5.2e+02 Score=25.31 Aligned_cols=32 Identities=9% Similarity=0.230 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 043311 178 LGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQ 211 (257)
Q Consensus 178 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 211 (257)
+..|.+++.++.+. +|+...|..+++.+-..|
T Consensus 1300 ~g~~~k~l~k~~~~--k~~~~~~~~~~~~~~~l~ 1331 (1354)
T 3lxu_X 1300 YGRMYKYVVKLIEE--KRTRDHFVELAAINGALG 1331 (1354)
T ss_dssp HHHHHHHHHHHHHH--TCCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhc--cccHHHHHHHHHHHHHcC
Confidence 55555555555433 245555555555555554
No 389
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=21.11 E-value=4.9e+02 Score=24.01 Aligned_cols=122 Identities=11% Similarity=0.050 Sum_probs=0.0
Q ss_pred HHHHHHhcCCh---HHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043311 93 MFDALSKDGLT---HEALQLFAQIKDK--GHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLASGVAPNAYTYAVLIKGL 167 (257)
Q Consensus 93 ll~~~~~~~~~---~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~~~~t~~~ll~~~ 167 (257)
++...|+.|+. +.|.+.|+..... +...+...-..+...-.+.|..++-..+++...... +..--..++.++
T Consensus 692 ~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~ll~aL 768 (909)
T 4fke_A 692 AISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRSTIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKLRSAL 768 (909)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHHHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHHHHHh
Q ss_pred HhccCCcchhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 043311 168 AAAADGNAKILGDAQKYLMEMVGKGMRPNAGTYTAVFEAFVRAQKVDEARGLLQQ 222 (257)
Q Consensus 168 ~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 222 (257)
+...+ .+...++++................+.......-..+.+.+.+.+
T Consensus 769 ~~~~d-----~~~l~~~L~~~l~~~~ir~qd~~~~~~~v~~n~~g~~~~~~f~~~ 818 (909)
T 4fke_A 769 ACSNE-----VWLLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLAWDFVQS 818 (909)
T ss_dssp TTCCC-----HHHHHHHHHHTTCTTTSCGGGHHHHHHHHHHSTTHHHHHHHHHHH
T ss_pred CCCCC-----HHHHHHHHHHHhCCCCCchhhHHHHHHHHhcChHHHHHHHHHHHH
No 390
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=20.81 E-value=2.1e+02 Score=19.70 Aligned_cols=46 Identities=9% Similarity=0.024 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043311 105 EALQLFAQIKDKGHMPDVVAHTAVIEAYASAGQGKEALRVFMRMLA 150 (257)
Q Consensus 105 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 150 (257)
++..+++++.+.+..-.-...--|=-++.+.|++++|.+..+.+.+
T Consensus 60 ~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 60 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3555555555432111112222233345555666666666655555
No 391
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=20.55 E-value=64 Score=24.26 Aligned_cols=126 Identities=10% Similarity=0.000 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-------CHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHh----
Q 043311 122 VVAHTAVIEAYASAGQGKEALRVFMRMLASGVAP-------NAYTYAVLIKGLAAAADGNAKILGDAQKYLMEMVG---- 190 (257)
Q Consensus 122 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~~-------~~~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~---- 190 (257)
..-.+.|.. .++.|+.+.+..+++...+.+... |..-++.|..++.... .|..+.+..+++.-..
T Consensus 11 ~~g~t~L~~-A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~---~g~~~~v~~Ll~~ga~~~~~ 86 (273)
T 2pnn_A 11 LYDRRSIFD-AVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLH---NGQNDTIALLLDVARKTDSL 86 (273)
T ss_dssp CCCHHHHHH-HHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCB---TTBCHHHHHHHHHHHHTTCH
T ss_pred cccchHHHH-HHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHh---cCChHHHHHHHHhhccccch
Confidence 333444544 456788988888888877666433 4455566666664200 2336666666665322
Q ss_pred -----CCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH----------------HHHHHHHhhcCCch
Q 043311 191 -----KGMR-PNAGTYTAVFEAFVRAQKVDEARGLLQQMKAKGFVPDEKA----------------VKEALIDKRGQGFR 248 (257)
Q Consensus 191 -----~g~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~t----------------~~~ll~~~~~~g~~ 248 (257)
.++. .|..-++.|. ..+..|+.+.+..+++ .|..++... -.+.|...+..|..
T Consensus 87 ~~~i~~~~~~~d~~g~tpL~-~A~~~g~~~~v~~Ll~----~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~ 161 (273)
T 2pnn_A 87 KQFVNASYTDSYYKGQTALH-IAIERRNMTLVTLLVE----NGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQL 161 (273)
T ss_dssp HHHHTCCCCSTTTTTCCHHH-HHHHTTCHHHHHHHHH----TTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCH
T ss_pred hHHhhcccccccCCCCCHHH-HHHHcCCHHHHHHHHH----CCCCcCccccccccccccccccccCCCCHHHHHHHcCCH
Confidence 1111 1223333343 3456777765555554 455554322 11233344456777
Q ss_pred hhHHhhhc
Q 043311 249 GVINILFG 256 (257)
Q Consensus 249 ~~~~~l~~ 256 (257)
+.++-|++
T Consensus 162 ~~v~~Ll~ 169 (273)
T 2pnn_A 162 AIVKFLLQ 169 (273)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 77766654
No 392
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=20.11 E-value=92 Score=21.21 Aligned_cols=143 Identities=11% Similarity=0.041 Sum_probs=64.8
Q ss_pred cccCCCCHHHHHHHHHHHHhCCCCCc--HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCh
Q 043311 64 VDEEPTDPRNLQEIFHKMRTEGLTNN--AVKMFDALSKDGLTHEALQLFAQIKDKGHMPDV---VAHTAVIEAYASAGQG 138 (257)
Q Consensus 64 ~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~ll~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~~~~~ 138 (257)
..+..|+.+.+..+++.-...--..+ -.+.+...+..|+.+-+..++ +.|..++. .-.+. +...+..|+.
T Consensus 8 ~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~-L~~A~~~~~~ 82 (172)
T 3v30_A 8 QLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLL----EWGADPHILAKERESA-LSLASTGGYT 82 (172)
T ss_dssp HHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHH----HHTCCTTCCCTTCCCH-HHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHH----HcCCCchhhcccCCCH-HHHHHHCCCH
Confidence 44566777766666544221000011 113444555667654444333 44544432 22233 3334455655
Q ss_pred HHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhccCCcchhHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHHcCCH
Q 043311 139 KEALRVFMRMLASGVAPNA---YTYAVLIKGLAAAADGNAKILGDAQKYLMEMVGKGMRPNAGT--YTAVFEAFVRAQKV 213 (257)
Q Consensus 139 ~~a~~~~~~m~~~g~~~~~---~t~~~ll~~~~~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~~~~ 213 (257)
+ +++.+.+.|..++. .-++.+..++ ..++ .+. ++.+.+.|..++... -.+.+...+..|+.
T Consensus 83 ~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~-----~~~----v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~ 148 (172)
T 3v30_A 83 D----IVGLLLERDVDINIYDWNGGTPLLYAV-RGNH-----VKC----VEALLARGADLTTEADSGYTPMDLAVALGYR 148 (172)
T ss_dssp H----HHHHHHTTTCCTTCCCTTSCCHHHHHH-HTTC-----HHH----HHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred H----HHHHHHHcCCCCCCCCCCCCCHHHHHH-HcCC-----HHH----HHHHHHcCCCccccCCCCCCHHHHHHHhCcH
Confidence 4 33444455554443 2233343333 3222 443 333444555554321 12344555566777
Q ss_pred HHHHHHHHHHHH
Q 043311 214 DEARGLLQQMKA 225 (257)
Q Consensus 214 ~~a~~~~~~m~~ 225 (257)
+.+.-+++...+
T Consensus 149 ~~~~~L~~~~~~ 160 (172)
T 3v30_A 149 KVQQVIENHILK 160 (172)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 766666666543
Done!