BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043313
         (240 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2VXZ|A Chain A, Crystal Structure Of Hypothetical Protein Pyrsv_gp04 From
           Pyrobaculum Spherical Virus
          Length = 165

 Score = 28.9 bits (63), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 8/62 (12%)

Query: 23  FLSPTPTFWRIIKRKDTEEF--------HPYAYICACMNCMFWILYGLPVVHPDSTLVVT 74
           F+SP      IIK     +F        H  A I + +N +   +YG P V  D T+ +T
Sbjct: 94  FISPPRLHDLIIKDPQARKFFSSIIPIAHRTAIILSFLNHLLKXIYGEPYVKTDETVYLT 153

Query: 75  IN 76
            N
Sbjct: 154 AN 155


>pdb|1IY8|A Chain A, Crystal Structure Of Levodione Reductase
 pdb|1IY8|B Chain B, Crystal Structure Of Levodione Reductase
 pdb|1IY8|C Chain C, Crystal Structure Of Levodione Reductase
 pdb|1IY8|D Chain D, Crystal Structure Of Levodione Reductase
 pdb|1IY8|E Chain E, Crystal Structure Of Levodione Reductase
 pdb|1IY8|F Chain F, Crystal Structure Of Levodione Reductase
 pdb|1IY8|G Chain G, Crystal Structure Of Levodione Reductase
 pdb|1IY8|H Chain H, Crystal Structure Of Levodione Reductase
          Length = 267

 Score = 28.9 bits (63), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 4/84 (4%)

Query: 101 KIVAIGLLGEVAFLGVIAVITFVVFHNTN--TRTLFVGIICDIFNIIMYASPLSIWHKVI 158
           K+V+I L G   FLG+  V+  +    +     T  VG I  I N   YA+       + 
Sbjct: 119 KVVSINLRG--VFLGLEKVLKIMREQGSGMVVNTASVGGIRGIGNQSGYAAAKHGVVGLT 176

Query: 159 KTKSVEYMPFFLSLANFANGAVWT 182
           +  +VEY  + + +   A GA+WT
Sbjct: 177 RNSAVEYGRYGIRINAIAPGAIWT 200


>pdb|1BUO|A Chain A, Btb Domain From Plzf
          Length = 121

 Score = 28.1 bits (61), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 38 DTEEFHPYAYICACMNCMFWILYGLPVVH 66
          D++EFH +  + AC + MF IL+     H
Sbjct: 36 DSQEFHAHRTVLACTSKMFEILFHRNSQH 64


>pdb|1IQ8|A Chain A, Crystal Structure Of Archaeosine Trna-Guanine
           Transglycosylase From Pyrococcus Horikoshii
 pdb|1IQ8|B Chain B, Crystal Structure Of Archaeosine Trna-Guanine
           Transglycosylase From Pyrococcus Horikoshii
 pdb|1IT7|A Chain A, Crystal Structure Of Archaeosine Trna-Guanine
           Transglycosylase Complexed With Guanine
 pdb|1IT7|B Chain B, Crystal Structure Of Archaeosine Trna-Guanine
           Transglycosylase Complexed With Guanine
 pdb|1IT8|A Chain A, Crystal Structure Of Archaeosine Trna-Guanine
           Transglycosylase From Pyrococcus Horikoshii Complexed
           With Archaeosine Precursor, Preq0
 pdb|1IT8|B Chain B, Crystal Structure Of Archaeosine Trna-Guanine
           Transglycosylase From Pyrococcus Horikoshii Complexed
           With Archaeosine Precursor, Preq0
 pdb|1J2B|A Chain A, Crystal Structure Of Archaeosine Trna-guanine
           Transglycosylase Complexed With Lambda-form Trna(val)
 pdb|1J2B|B Chain B, Crystal Structure Of Archaeosine Trna-guanine
           Transglycosylase Complexed With Lambda-form Trna(val)
          Length = 582

 Score = 28.1 bits (61), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 14/58 (24%), Positives = 30/58 (51%)

Query: 62  LPVVHPDSTLVVTINGVGLALELIYLSIFCVYNRQKKGRKIVAIGLLGEVAFLGVIAV 119
           +PVV+P   +V       +  E+I  + + +Y  ++  RK + +G+   + + G+I V
Sbjct: 37  MPVVNPKQMVVEPKELEKMGFEIIITNSYIIYKDEELRRKALELGIHRMLDYNGIIEV 94


>pdb|1CS3|A Chain A, Structure Of BtbPOZ TRANSCRIPTION REPRESSION DOMAIN FROM
          PROMELOCYTIC Leukemia Zinc Finger Oncoprotein
          Length = 116

 Score = 28.1 bits (61), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 38 DTEEFHPYAYICACMNCMFWILYGLPVVH 66
          D++EFH +  + AC + MF IL+     H
Sbjct: 35 DSQEFHAHRTVLACTSKMFEILFHRNSQH 63


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.144    0.447 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,985,403
Number of Sequences: 62578
Number of extensions: 275382
Number of successful extensions: 519
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 516
Number of HSP's gapped (non-prelim): 6
length of query: 240
length of database: 14,973,337
effective HSP length: 96
effective length of query: 144
effective length of database: 8,965,849
effective search space: 1291082256
effective search space used: 1291082256
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.9 bits)