Query 043313
Match_columns 240
No_of_seqs 152 out of 1492
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 03:45:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043313.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043313hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1623 Multitransmembrane pro 100.0 9.2E-46 2E-50 315.5 15.9 209 5-218 3-211 (243)
2 PF03083 MtN3_slv: Sugar efflu 99.9 2E-22 4.4E-27 148.1 8.6 86 134-219 2-87 (87)
3 PF03083 MtN3_slv: Sugar efflu 99.8 2.2E-21 4.7E-26 142.5 5.6 86 10-98 2-87 (87)
4 KOG1623 Multitransmembrane pro 99.5 5.8E-15 1.2E-19 126.6 5.1 90 130-219 4-94 (243)
5 COG4095 Uncharacterized conser 99.3 6E-12 1.3E-16 90.7 8.4 83 6-94 3-85 (89)
6 TIGR00951 2A43 Lysosomal Cysti 99.3 2E-10 4.2E-15 98.3 17.7 198 11-214 4-219 (220)
7 COG4095 Uncharacterized conser 99.2 2.8E-11 6.1E-16 87.2 6.3 81 132-215 5-85 (89)
8 KOG3211 Predicted endoplasmic 99.0 5.6E-09 1.2E-13 86.9 10.9 193 10-220 30-228 (230)
9 PF04193 PQ-loop: PQ loop repe 98.4 8.2E-07 1.8E-11 60.5 5.6 54 13-68 4-57 (61)
10 PF04193 PQ-loop: PQ loop repe 98.1 6.7E-06 1.5E-10 55.9 5.9 53 139-191 6-58 (61)
11 KOG2913 Predicted membrane pro 97.9 0.0002 4.3E-09 62.7 11.5 198 9-218 7-249 (260)
12 PRK01021 lpxB lipid-A-disaccha 96.8 0.064 1.4E-06 52.3 15.6 194 11-214 10-218 (608)
13 smart00679 CTNS Repeated motif 96.4 0.0031 6.7E-08 37.0 2.6 28 25-52 2-29 (32)
14 PHA02246 hypothetical protein 96.3 0.32 7E-06 39.3 14.2 166 16-203 10-178 (192)
15 TIGR00951 2A43 Lysosomal Cysti 96.3 0.022 4.7E-07 48.8 8.1 48 134-184 6-53 (220)
16 smart00679 CTNS Repeated motif 95.5 0.014 3.1E-07 34.1 2.5 28 149-176 2-29 (32)
17 KOG2489 Transmembrane protein 91.7 2.4 5.2E-05 40.4 10.9 198 15-226 325-561 (592)
18 KOG3211 Predicted endoplasmic 90.6 0.48 1E-05 40.1 4.8 76 21-98 152-227 (230)
19 KOG1589 Uncharacterized conser 90.1 0.06 1.3E-06 40.7 -0.9 65 160-224 43-109 (118)
20 PF03650 MPC: Uncharacterised 90.0 0.074 1.6E-06 41.1 -0.5 60 160-219 39-100 (119)
21 PHA02246 hypothetical protein 89.0 3.7 8.1E-05 33.3 8.4 67 9-80 110-176 (192)
22 KOG2913 Predicted membrane pro 85.5 2 4.4E-05 37.7 5.7 55 136-190 10-64 (260)
23 KOG3145 Cystine transporter Cy 83.6 2.9 6.2E-05 37.5 5.7 208 4-220 117-360 (372)
24 PF03650 MPC: Uncharacterised 82.3 1 2.2E-05 34.8 2.1 62 36-98 39-100 (119)
25 PF07578 LAB_N: Lipid A Biosyn 82.2 3.1 6.7E-05 29.3 4.3 53 151-204 14-66 (72)
26 COG3952 Predicted membrane pro 80.7 4.4 9.6E-05 30.6 5.0 64 156-219 46-109 (113)
27 PF10688 Imp-YgjV: Bacterial i 77.8 11 0.00025 30.6 7.1 36 172-207 118-153 (163)
28 KOG1589 Uncharacterized conser 71.7 3.3 7.1E-05 31.4 2.2 58 36-94 43-100 (118)
29 PF07578 LAB_N: Lipid A Biosyn 71.6 7.3 0.00016 27.4 3.8 58 19-81 6-64 (72)
30 PF10688 Imp-YgjV: Bacterial i 64.9 5.8 0.00012 32.3 2.6 36 48-86 118-153 (163)
31 PRK05771 V-type ATP synthase s 63.8 1.6E+02 0.0034 29.2 14.0 48 24-84 326-373 (646)
32 PF09586 YfhO: Bacterial membr 55.4 2.4E+02 0.0052 28.6 13.6 26 14-42 222-247 (843)
33 PF10277 Frag1: Frag1/DRAM/Sfk 47.8 1.5E+02 0.0033 24.1 12.4 111 42-156 90-214 (215)
34 TIGR00341 conserved hypothetic 47.3 1.9E+02 0.0042 26.3 9.5 71 147-218 216-293 (325)
35 PF13965 SID-1_RNA_chan: dsRNA 44.4 3.2E+02 0.007 26.9 13.6 154 19-186 346-502 (570)
36 PF15102 TMEM154: TMEM154 prot 39.6 47 0.001 26.6 3.9 31 192-222 60-90 (146)
37 PF05602 CLPTM1: Cleft lip and 38.3 70 0.0015 30.1 5.5 69 13-84 304-373 (438)
38 PF06946 Phage_holin_5: Phage 34.8 63 0.0014 23.9 3.6 56 167-222 34-89 (93)
39 COG3952 Predicted membrane pro 34.0 2.1E+02 0.0046 21.7 6.5 47 43-92 56-103 (113)
40 KOG4314 Predicted carbohydrate 33.3 1.1E+02 0.0023 26.3 5.2 57 126-182 126-183 (290)
41 PRK01021 lpxB lipid-A-disaccha 29.7 3.5E+02 0.0076 26.9 8.8 77 10-91 139-216 (608)
42 PF01372 Melittin: Melittin; 27.9 1E+02 0.0023 17.0 2.8 15 24-38 10-24 (26)
43 PRK10580 proY putative proline 26.7 3E+02 0.0065 25.6 7.7 30 131-160 356-385 (457)
44 PRK11387 S-methylmethionine tr 23.9 2.5E+02 0.0054 26.3 6.6 21 133-153 365-385 (471)
45 PF08733 PalH: PalH/RIM21; In 23.6 5.7E+02 0.012 23.4 8.8 49 13-61 165-214 (348)
46 PRK11387 S-methylmethionine tr 22.2 5E+02 0.011 24.2 8.4 23 14-36 370-392 (471)
47 TIGR00341 conserved hypothetic 21.9 1E+02 0.0022 28.1 3.4 53 43-98 242-294 (325)
48 PRK10655 potE putrescine trans 21.4 3.7E+02 0.0079 24.8 7.2 25 200-224 413-437 (438)
49 KOG3145 Cystine transporter Cy 20.6 50 0.0011 29.8 1.1 76 149-224 138-233 (372)
50 PF08693 SKG6: Transmembrane a 20.4 1.2E+02 0.0027 18.8 2.5 19 200-218 22-40 (40)
No 1
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=100.00 E-value=9.2e-46 Score=315.45 Aligned_cols=209 Identities=45% Similarity=0.818 Sum_probs=186.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhccccCCCceEEeehhHHHHHHH
Q 043313 5 EAARNIVGIIGNVISFGLFLSPTPTFWRIIKRKDTEEFHPYAYICACMNCMFWILYGLPVVHPDSTLVVTINGVGLALEL 84 (240)
Q Consensus 5 ~~~~~i~~~l~~~~t~~~~~splp~i~~i~k~kst~~~s~~pf~~~~~n~~~Wl~YG~~~l~~d~~~li~~N~~g~~~~~ 84 (240)
+....+++.+|.++|++++++|+|+++||+|+||+|+.|+.||+++.+||++|+.|| ..++|+..++.+|.+|+.++.
T Consensus 3 ~~~~~l~~i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG--~~~~~d~llitIN~~G~~ie~ 80 (243)
T KOG1623|consen 3 NVLLFLFGILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLYYG--LLKVHDYLLITINGIGLVIET 80 (243)
T ss_pred chHHHHHHHHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHHhh--hhccCceEEEEEehhcHHHHH
Confidence 456789999999999999999999999999999999999999999999999999999 566634999999999999999
Q ss_pred HHHHHHHhhccCchhhHHHHHHHHHHHHHHHHHHhhhhhhccCCceehhhhhhHHHHHHHHHHhhhHHHHHHHHhcCCCC
Q 043313 85 IYLSIFCVYNRQKKGRKIVAIGLLGEVAFLGVIAVITFVVFHNTNTRTLFVGIICDIFNIIMYASPLSIWHKVIKTKSVE 164 (240)
Q Consensus 85 ~y~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~~~~~i~~~~Spl~~i~~v~k~kst~ 164 (240)
.|+..|+.|+++|+ +.+. .......++.....+++...++++.+.+.+|.+|++.+++||+|||..+++++|+||+|
T Consensus 81 ~Yi~~f~~ya~~k~-~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~lG~vc~~~nI~~~~sPL~~m~~VIktkSvE 157 (243)
T KOG1623|consen 81 VYISIFLYYAPKKK-TVKI--VLALVLGVIGLIILLTLLLFHDPERRVSVLGIVCAVFNISMFAAPLSVIRKVIKTKSVE 157 (243)
T ss_pred HHHHHHheecCchh-eeEe--eehHHHHHHHHHHHHHHHhcCCcceeeeeeehhhhhhhHHhhhccHHhhhhheecCcee
Confidence 99999999998887 2211 22222333444444556667888888999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHhhHHHhhhhccccCeeEEeehHHHHHHHHHHHhheeeeeCCC
Q 043313 165 YMPFFLSLANFANGAVWTAYGLIKFDKFIVVSNGLGTVLGAIQLIIYGCYYKST 218 (240)
Q Consensus 165 ~l~~~~~~~~~~~~~~W~~YG~l~~d~~i~~~N~~G~~l~~~~l~l~~~y~~~~ 218 (240)
.||++++++.++++..|++||++++|.+|.+||.+|..+++.|+.+|+.||+++
T Consensus 158 ~mPf~Ls~a~fl~a~~W~lYGlli~D~~IaipN~iG~~l~~~QL~Ly~~y~~~~ 211 (243)
T KOG1623|consen 158 YMPFPLSFALFLVAVQWLLYGLLIKDFFIAIPNVLGFLLGLIQLILYFKYPKTT 211 (243)
T ss_pred eechHHHHHHHHHHHHHHHHHHHhcCeEEEcccHHHHHHHHHHHHHhhhcCCCc
Confidence 999999999999999999999999999999999999999999999999998766
No 2
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=99.88 E-value=2e-22 Score=148.05 Aligned_cols=86 Identities=38% Similarity=0.560 Sum_probs=83.6
Q ss_pred hhhhHHHHHHHHHHhhhHHHHHHHHhcCCCCccchHHHHHHHHhhHHHhhhhccccCeeEEeehHHHHHHHHHHHhheee
Q 043313 134 FVGIICDIFNIIMYASPLSIWHKVIKTKSVEYMPFFLSLANFANGAVWTAYGLIKFDKFIVVSNGLGTVLGAIQLIIYGC 213 (240)
Q Consensus 134 ~lG~~~~~~~i~~~~Spl~~i~~v~k~kst~~l~~~~~~~~~~~~~~W~~YG~l~~d~~i~~~N~~G~~l~~~~l~l~~~ 213 (240)
++|.+|.+.++++++||++++++++|+||++++|..|++++++||.+|+.||++++|++++++|.+|.+++.+|+.+|++
T Consensus 2 ~lg~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG~l~~d~~i~~~N~~g~~~~~~~~~~~~~ 81 (87)
T PF03083_consen 2 VLGILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYGILINDWPIIVPNVFGLVLSIIYLVVYYI 81 (87)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhhhhcCCeeEEeeHHHHHHHHHHHHhheEE
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCC
Q 043313 214 YYKSTP 219 (240)
Q Consensus 214 y~~~~~ 219 (240)
|+++|+
T Consensus 82 y~~~~~ 87 (87)
T PF03083_consen 82 YPSKKK 87 (87)
T ss_pred eCCCCC
Confidence 998774
No 3
>PF03083 MtN3_slv: Sugar efflux transporter for intercellular exchange; InterPro: IPR004316 This family includes proteins such as Drosophila saliva [], MtN3 involved in root nodule development [] and proteins involved in activation and expression of recombination activation genes (RAGs) []. Although the molecular function of these proteins is unknown, they are almost certainly transmembrane proteins. This signature maps to transmembrane helices which are found in two copies in most members of the family.; GO: 0016021 integral to membrane
Probab=99.84 E-value=2.2e-21 Score=142.53 Aligned_cols=86 Identities=34% Similarity=0.714 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhccccCCCceEEeehhHHHHHHHHHHHH
Q 043313 10 IVGIIGNVISFGLFLSPTPTFWRIIKRKDTEEFHPYAYICACMNCMFWILYGLPVVHPDSTLVVTINGVGLALELIYLSI 89 (240)
Q Consensus 10 i~~~l~~~~t~~~~~splp~i~~i~k~kst~~~s~~pf~~~~~n~~~Wl~YG~~~l~~d~~~li~~N~~g~~~~~~y~~~ 89 (240)
++|.+|.+.++++++||+|+++|++|+||+|++|+.|++..++||.+|+.|| ++.+| ++++.+|.+|..++.+|+.+
T Consensus 2 ~lg~~~~~~~i~~~~spl~~i~~v~k~ks~~~~~~~~~~~~~~~~~~W~~YG--~l~~d-~~i~~~N~~g~~~~~~~~~~ 78 (87)
T PF03083_consen 2 VLGILASVSSIIMFLSPLPQIRQVIKTKSTGSVSFPPFLAMFFNCVLWLIYG--ILIND-WPIIVPNVFGLVLSIIYLVV 78 (87)
T ss_pred eeeHHHHHHHHHHHHHHHHHHHHHHhCCCCCccceehhHHHhhhccHhhhhh--hhcCC-eeEEeeHHHHHHHHHHHHhh
Confidence 5789999999999999999999999999999999999999999999999999 78888 79999999999999999999
Q ss_pred HHhhccCch
Q 043313 90 FCVYNRQKK 98 (240)
Q Consensus 90 ~~~y~~~~~ 98 (240)
|++|++|||
T Consensus 79 ~~~y~~~~~ 87 (87)
T PF03083_consen 79 YYIYPSKKK 87 (87)
T ss_pred eEEeCCCCC
Confidence 999998875
No 4
>KOG1623 consensus Multitransmembrane protein [General function prediction only]
Probab=99.54 E-value=5.8e-15 Score=126.55 Aligned_cols=90 Identities=26% Similarity=0.500 Sum_probs=84.8
Q ss_pred eehhhhhhHHHHHHHHHHhhhHHHHHHHHhcCCCCccchHHHHHHHHhhHHHhhhhcccc-CeeEEeehHHHHHHHHHHH
Q 043313 130 TRTLFVGIICDIFNIIMYASPLSIWHKVIKTKSVEYMPFFLSLANFANGAVWTAYGLIKF-DKFIVVSNGLGTVLGAIQL 208 (240)
Q Consensus 130 ~~~~~lG~~~~~~~i~~~~Spl~~i~~v~k~kst~~l~~~~~~~~~~~~~~W~~YG~l~~-d~~i~~~N~~G~~l~~~~l 208 (240)
.....+|..|.++++++|.||.|+++|+.|+||+|+.+..|++++.+||.+|+.||.+.+ |..++..|.+|.++..+|+
T Consensus 4 ~~~~l~~i~~~~is~~~fl~pv~tf~~I~KkkS~e~~s~~Pfl~~ll~~~lWl~YG~~~~~d~llitIN~~G~~ie~~Yi 83 (243)
T KOG1623|consen 4 VLLFLFGILGNIISFGVFLSPVPTFRRIRKKKSVEGFSSLPFLMGLLSCSLWLYYGLLKVHDYLLITINGIGLVIETVYI 83 (243)
T ss_pred hHHHHHHHHHHHHhHHHhhcCchhHHHhhcccCcCCCCCcCcHHHHHHHHHHHHhhhhccCceEEEEEehhcHHHHHHHH
Confidence 345678999999999999999999999999999999999999999999999999999888 8899999999999999999
Q ss_pred hheeeeeCCCC
Q 043313 209 IIYGCYYKSTP 219 (240)
Q Consensus 209 ~l~~~y~~~~~ 219 (240)
..|+.|.++|+
T Consensus 84 ~~f~~ya~~k~ 94 (243)
T KOG1623|consen 84 SIFLYYAPKKK 94 (243)
T ss_pred HHHheecCchh
Confidence 99999987775
No 5
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=99.34 E-value=6e-12 Score=90.71 Aligned_cols=83 Identities=23% Similarity=0.421 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhccccCCCceEEeehhHHHHHHHH
Q 043313 6 AARNIVGIIGNVISFGLFLSPTPTFWRIIKRKDTEEFHPYAYICACMNCMFWILYGLPVVHPDSTLVVTINGVGLALELI 85 (240)
Q Consensus 6 ~~~~i~~~l~~~~t~~~~~splp~i~~i~k~kst~~~s~~pf~~~~~n~~~Wl~YG~~~l~~d~~~li~~N~~g~~~~~~ 85 (240)
.+.+.+|..|++.+. ++.+||..+++|+|+++++|+.+|......+.+|+.|| ++.+| .|++..|.++..++..
T Consensus 3 ~~~~viG~ia~iltt---f~flPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliyg--ILi~~-lPii~aN~i~~il~li 76 (89)
T COG4095 3 FFIEVIGTIAGILTT---FAFLPQLIKIIKTKNTASISLPMFIILNIALFLWLIYG--ILIND-LPIIIANIISFILSLI 76 (89)
T ss_pred chhhhHHHHHHHHHH---HHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHH--HHHcc-CcchhHHHHHHHHHHH
Confidence 345667777777665 55799999999999999999999999999999999999 78988 9999999999999987
Q ss_pred HHHHHHhhc
Q 043313 86 YLSIFCVYN 94 (240)
Q Consensus 86 y~~~~~~y~ 94 (240)
.+....+|.
T Consensus 77 Il~~kI~~~ 85 (89)
T COG4095 77 ILFYKIKYI 85 (89)
T ss_pred HHHHHHHHH
Confidence 766666554
No 6
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=99.31 E-value=2e-10 Score=98.30 Aligned_cols=198 Identities=13% Similarity=0.074 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhcc-----ccCCCceEEe----ehhHHH-
Q 043313 11 VGIIGNVISFGLFLSPTPTFWRIIKRKDTEEFHPYAYICACMNCMFWILYGLPV-----VHPDSTLVVT----INGVGL- 80 (240)
Q Consensus 11 ~~~l~~~~t~~~~~splp~i~~i~k~kst~~~s~~pf~~~~~n~~~Wl~YG~~~-----l~~d~~~li~----~N~~g~- 80 (240)
-..+|.+..++-..+..||+++++|+||++++|+..+.....+...|..|-... ..++ .|.-. .|-+-.
T Consensus 4 S~~lG~~~~~~~~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~yn~~~~~~~~~~~~-~~~~~~~v~~edl~~a 82 (220)
T TIGR00951 4 SQILGWGYVAAWSISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIFNFLQLYCWSITNE-FPLSSPGVTQNDVFFT 82 (220)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHHHHHHhcchhhhhc-cccccCCCcHHHHHHH
Confidence 356777777777788999999999999999999999999999999999992000 1222 22221 122222
Q ss_pred ----HHHHHHHHHHHhhccCchhhH--HHHHHHH-HHHHHHHHHHhhhhhhccCCceehhhhhhHHHHHHHHHHhhhHHH
Q 043313 81 ----ALELIYLSIFCVYNRQKKGRK--IVAIGLL-GEVAFLGVIAVITFVVFHNTNTRTLFVGIICDIFNIIMYASPLSI 153 (240)
Q Consensus 81 ----~~~~~y~~~~~~y~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~~~~~i~~~~Spl~~ 153 (240)
++......-+.+|.++.+ |. +...... ...... +...... .++....+.+..+..+--.....+-+||
T Consensus 83 i~~~il~~l~~~q~~~~~~~~~-~~s~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~l~~l~~l~~iki~is~ikyiPQ 157 (220)
T TIGR00951 83 LHAILICFIVLHQCGDYERGWQ-RVSNPWILRILVALLACF-ATLLVAL---LSPITPLAFVTMLSYIKVAVTLVKYFPQ 157 (220)
T ss_pred HHHHHHHHHHHHHHhhcccccc-ccchhHHHHHHHHHHHHH-HHHHHHH---HhcCChHHHHHHHHHHHHHHHHHHHhHH
Confidence 222221122222322211 11 1111111 111111 1111111 1123335566666666666677888999
Q ss_pred HHHHHhcCCCCccchHHHHHHHHhhHHHhhhhcc-ccCeeEEeehHHHHHHHHHHHhheeee
Q 043313 154 WHKVIKTKSVEYMPFFLSLANFANGAVWTAYGLI-KFDKFIVVSNGLGTVLGAIQLIIYGCY 214 (240)
Q Consensus 154 i~~v~k~kst~~l~~~~~~~~~~~~~~W~~YG~l-~~d~~i~~~N~~G~~l~~~~l~l~~~y 214 (240)
++.++|+|||++.|.......+.++......... .+|...+....++..++.+.+...+.|
T Consensus 158 i~~Ny~~ksT~glSi~~i~Ld~~G~lqri~ts~~~~gd~~~l~~~~~s~~~n~i~~~Q~~~y 219 (220)
T TIGR00951 158 AATNYHNKSTGQLSIITVFLDFTGLLQRIFQSVNETGDPLKAGLFVVSSLFNGLFAAQVFFY 219 (220)
T ss_pred HHHHHhcCCCCcCCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999888888874 457888888889999999888877766
No 7
>COG4095 Uncharacterized conserved protein [Function unknown]
Probab=99.22 E-value=2.8e-11 Score=87.25 Aligned_cols=81 Identities=23% Similarity=0.323 Sum_probs=71.8
Q ss_pred hhhhhhHHHHHHHHHHhhhHHHHHHHHhcCCCCccchHHHHHHHHhhHHHhhhhccccCeeEEeehHHHHHHHHHHHhhe
Q 043313 132 TLFVGIICDIFNIIMYASPLSIWHKVIKTKSVEYMPFFLSLANFANGAVWTAYGLIKFDKFIVVSNGLGTVLGAIQLIIY 211 (240)
Q Consensus 132 ~~~lG~~~~~~~i~~~~Spl~~i~~v~k~kst~~l~~~~~~~~~~~~~~W~~YG~l~~d~~i~~~N~~G~~l~~~~l~l~ 211 (240)
.++.|..|+..+.+.| +||..+++|+||+++++++++.....+..+|..||++++|.++...|.++..++++-+...
T Consensus 5 ~~viG~ia~ilttf~f---lPQ~iki~ktK~t~~Isl~~fii~~ia~~lwliygILi~~lPii~aN~i~~il~liIl~~k 81 (89)
T COG4095 5 IEVIGTIAGILTTFAF---LPQLIKIIKTKNTASISLPMFIILNIALFLWLIYGILINDLPIIIANIISFILSLIILFYK 81 (89)
T ss_pred hhhHHHHHHHHHHHHH---HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHHH
Confidence 4567777777776665 7999999999999999999999999999999999999999999999999999999887776
Q ss_pred eeee
Q 043313 212 GCYY 215 (240)
Q Consensus 212 ~~y~ 215 (240)
..|.
T Consensus 82 I~~~ 85 (89)
T COG4095 82 IKYI 85 (89)
T ss_pred HHHH
Confidence 6654
No 8
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=98.98 E-value=5.6e-09 Score=86.86 Aligned_cols=193 Identities=11% Similarity=0.092 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhccccCCCceEEeehhHHHH----HHHH
Q 043313 10 IVGIIGNVISFGLFLSPTPTFWRIIKRKDTEEFHPYAYICACMNCMFWILYGLPVVHPDSTLVVTINGVGLA----LELI 85 (240)
Q Consensus 10 i~~~l~~~~t~~~~~splp~i~~i~k~kst~~~s~~pf~~~~~n~~~Wl~YG~~~l~~d~~~li~~N~~g~~----~~~~ 85 (240)
+.+.+|.........-.+||+.+|+.+||.+++|...+....++...-+.|. .+++ .| ....|.. ++.+
T Consensus 30 lsklLg~~~va~sl~vKlPQI~kI~aakSa~GLSv~s~~LElvgytvtl~Y~---~~~g-~p---Fss~gE~~fLl~Q~v 102 (230)
T KOG3211|consen 30 LSKLLGLSTVAGSLLVKLPQIMKIRAAKSARGLSVVSLLLELVGYTVTLSYS---YTSG-YP---FSSYGEYPFLLLQAV 102 (230)
T ss_pred HHhhhhHHHHHHHHHhhhhHHHHHHhhcccccccHHHHHHHHHHHHheeeeh---hhcC-CC---chhHHHHHHHHHHHH
Confidence 3445666666666677999999999999999999999999999999999999 4555 33 3555543 3433
Q ss_pred HH-HHHHhhccCchhhHHHHHHHHHHHHHHHHHHhhhhhhccCCceehhhhhhHHHHHHHHHHhhhHHHHHHHHhcCCCC
Q 043313 86 YL-SIFCVYNRQKKGRKIVAIGLLGEVAFLGVIAVITFVVFHNTNTRTLFVGIICDIFNIIMYASPLSIWHKVIKTKSVE 164 (240)
Q Consensus 86 y~-~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~~~~~i~~~~Spl~~i~~v~k~kst~ 164 (240)
.+ ...+.|+-......+...... .. ...+. ++.....++-...+...-+...|.++|+....|+|+++
T Consensus 103 ili~~if~f~~~~~~~v~~l~~~~----~v----~~~~~---sk~~p~~~~~L~~~~~l~i~v~sr~~Qi~~n~~~~~tg 171 (230)
T KOG3211|consen 103 ILILCIFHFSGQTVTVVQFLGYIA----LV----VSVLA---SKALPLWIITLAQNLCLPIVVVSRLLQIQCNYHNRSTG 171 (230)
T ss_pred HHHHHHHHhccceeehhhHHHHHH----HH----HHHHH---HhhhhHHHHHHHHhcCchhhhHHHHHHHHHHhcccccc
Confidence 32 223333311110001111111 00 01111 12223333444444444455689999999999999999
Q ss_pred ccchHHHHHHHHhhHHHhhhhccc-cCeeEEeehHHHHHHHHHHHhheeeeeCCCCC
Q 043313 165 YMPFFLSLANFANGAVWTAYGLIK-FDKFIVVSNGLGTVLGAIQLIIYGCYYKSTPK 220 (240)
Q Consensus 165 ~l~~~~~~~~~~~~~~W~~YG~l~-~d~~i~~~N~~G~~l~~~~l~l~~~y~~~~~~ 220 (240)
.+++...+.++-.|....+|.... +|..+...-.+...++..-....+.|++++.+
T Consensus 172 qls~it~fLsf~g~lARiftsiq~t~d~~mll~~v~s~~~Ng~i~aq~l~Y~s~~~~ 228 (230)
T KOG3211|consen 172 QLSLITVFLSFGGCLARIFTSIQETGDFLMLLRFVISLALNGLITAQVLRYWSTAIK 228 (230)
T ss_pred hhHHHHHHHHhhhHHHHHHHHHHhcCChhhHHHHHHHHHHhHHHHHHHHHHHhcCCC
Confidence 999999999999999999999974 68888888999999999888888999876654
No 9
>PF04193 PQ-loop: PQ loop repeat
Probab=98.39 E-value=8.2e-07 Score=60.45 Aligned_cols=54 Identities=20% Similarity=0.372 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhccccCC
Q 043313 13 IIGNVISFGLFLSPTPTFWRIIKRKDTEEFHPYAYICACMNCMFWILYGLPVVHPD 68 (240)
Q Consensus 13 ~l~~~~t~~~~~splp~i~~i~k~kst~~~s~~pf~~~~~n~~~Wl~YG~~~l~~d 68 (240)
.+|.+..++..++.+||+++.+|+|+++++|+..+.....+..+|+.|. +..++
T Consensus 4 ~~g~i~~~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~--~~~~~ 57 (61)
T PF04193_consen 4 ILGIISIVLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYS--ILSNY 57 (61)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHH--HHhcC
Confidence 4556666666788999999999999999999999999999999999999 56654
No 10
>PF04193 PQ-loop: PQ loop repeat
Probab=98.15 E-value=6.7e-06 Score=55.88 Aligned_cols=53 Identities=19% Similarity=0.179 Sum_probs=45.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHhcCCCCccchHHHHHHHHhhHHHhhhhccccCe
Q 043313 139 CDIFNIIMYASPLSIWHKVIKTKSVEYMPFFLSLANFANGAVWTAYGLIKFDK 191 (240)
Q Consensus 139 ~~~~~i~~~~Spl~~i~~v~k~kst~~l~~~~~~~~~~~~~~W~~YG~l~~d~ 191 (240)
+.+..++...+.+||+.+++|+||++++|+........++.+|+.|++..++.
T Consensus 6 g~i~~~~~~~~~lPQi~~~~k~ks~~glS~~~~~l~~~g~~~~~~~~~~~~~~ 58 (61)
T PF04193_consen 6 GIISIVLWIISFLPQIIKNYKRKSTGGLSLWFLLLWLIGSILWVLYSILSNYP 58 (61)
T ss_pred HHHHHHHHHHHHHhHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 44444555677789999999999999999999999999999999999988754
No 11
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=97.87 E-value=0.0002 Score=62.71 Aligned_cols=198 Identities=16% Similarity=0.159 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhccccCCCceEEeehhHHHHHHHHH--
Q 043313 9 NIVGIIGNVISFGLFLSPTPTFWRIIKRKDTEEFHPYAYICACMNCMFWILYGLPVVHPDSTLVVTINGVGLALELIY-- 86 (240)
Q Consensus 9 ~i~~~l~~~~t~~~~~splp~i~~i~k~kst~~~s~~pf~~~~~n~~~Wl~YG~~~l~~d~~~li~~N~~g~~~~~~y-- 86 (240)
+.-..+|.+.+++-...-.||+....|+|+.+++|+.+.+.-......=+.|. .+.+- |...-....+|
T Consensus 7 ~~s~~~g~ls~~~w~v~~iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~--~l~~~-------~~~~~~~~~yy~~ 77 (260)
T KOG2913|consen 7 TLSTILGILSTVCWCVQLIPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGF--FLQPL-------GSTLKVQAVYYTL 77 (260)
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHH--Hhccc-------chhHHHHHHHHHH
Confidence 34445666666677778899999999999999999999998888888888888 44432 22222222221
Q ss_pred ----HHHHHhhccCchh---------hHHHHH---HHH----------------HHHHHHHHHHhhhhhhcc-----C-C
Q 043313 87 ----LSIFCVYNRQKKG---------RKIVAI---GLL----------------GEVAFLGVIAVITFVVFH-----N-T 128 (240)
Q Consensus 87 ----~~~~~~y~~~~~~---------~~~~~~---~~~----------------~~~~~~~~~~~~~~~~~~-----~-~ 128 (240)
+...+.|.+++.. .+.... ... ....+...++........ + .
T Consensus 78 ~d~~l~~q~~yy~~~~~~~pll~~~s~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 157 (260)
T KOG2913|consen 78 ADSVLFVQCLYYGNIYPREPLLPVPSFRSLLGGLEALLILSIKLFSPRFVKWPVVALGFLAIVFLICGAAYESLLRAVRV 157 (260)
T ss_pred HHHHHHHHHHhcchhcccCccccccchhhhhcchHHHHHHHhhccCcchhhccchhhhhHHHHHHHHHHHhhcccccccc
Confidence 1122222211110 000000 000 000011111111100000 0 1
Q ss_pred c-eehhhhhh-HHHHHHHHHHhhhHHHHHHHHhcCCCCccchHHHHHHHHhhHHHhhhhccc---cCeeEEeehHHHHHH
Q 043313 129 N-TRTLFVGI-ICDIFNIIMYASPLSIWHKVIKTKSVEYMPFFLSLANFANGAVWTAYGLIK---FDKFIVVSNGLGTVL 203 (240)
Q Consensus 129 ~-~~~~~lG~-~~~~~~i~~~~Spl~~i~~v~k~kst~~l~~~~~~~~~~~~~~W~~YG~l~---~d~~i~~~N~~G~~l 203 (240)
+ ...+.+|. +|...+.+..++++||+...+|.|+++++++..+.....++ ..|+.-. .|..=..-..-...+
T Consensus 158 ~~~~~~~lg~ilG~l~a~ly~~~rIPQI~~n~~~~s~eGls~~~F~~~~~~n---~~y~~s~~~~~n~~w~~~~~~~~~~ 234 (260)
T KOG2913|consen 158 NGLEIDSLGAILGSLSALLYLGARIPQIILNHLRKSTEGLSLLAFAFNSLGN---TTYILSSYLVTNLPWLVDSKGTIYL 234 (260)
T ss_pred chhhhcchHHHHHHHHHHHHcccccchhhhhhccCccchhHHHHHHHHHccc---cccccccccccCCcccccCCcchhH
Confidence 1 23344555 55677788899999999999999999999998777666666 6777762 221111112234557
Q ss_pred HHHHHhheeeeeCCC
Q 043313 204 GAIQLIIYGCYYKST 218 (240)
Q Consensus 204 ~~~~l~l~~~y~~~~ 218 (240)
.+.....++.|+++|
T Consensus 235 D~~~~~q~~~~~~~~ 249 (260)
T KOG2913|consen 235 DIFIFLQFFNYRASK 249 (260)
T ss_pred HHHHHHHHHHhhccc
Confidence 777778888887665
No 12
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=96.79 E-value=0.064 Score=52.32 Aligned_cols=194 Identities=14% Similarity=0.086 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHhcCCCCCCchhHH-HHHHHHHHHHHHhhccccCCCceEEeehhHHHHHHHHHHHH
Q 043313 11 VGIIGNVISFGLFLSPTPTFWRIIKRKDTEEFHPYAYI-CACMNCMFWILYGLPVVHPDSTLVVTINGVGLALELIYLSI 89 (240)
Q Consensus 11 ~~~l~~~~t~~~~~splp~i~~i~k~kst~~~s~~pf~-~~~~n~~~Wl~YG~~~l~~d~~~li~~N~~g~~~~~~y~~~ 89 (240)
.-.+|.+..+++..-.+-|-...-|+| +.+-|.-|+ ....++.+-+.|| ++.+| .+++.....|.++..=-+.+
T Consensus 10 ~~~~G~~~q~~F~~rf~~QW~~sek~~--~s~~p~~FW~~Sl~g~~~l~~y~--~~~~~-~~~~~~q~~~~~iy~rNl~l 84 (608)
T PRK01021 10 LYPLGLFANLFFGSAFCIQWFLSKKRK--YSYVPKIFWILSSIGAVLMICHG--FIQSQ-FPIALLHSFNLIIYFRNLNI 84 (608)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC--CccCchHHHHHHHHHHHHHHHHH--HHhcC-CcEEEecccceEEEeehhhh
Confidence 334555555555444455554444444 344555565 6688889999999 67777 77777666665442211110
Q ss_pred HHhhccCchhhHHHH-HHHHHHHHHH---HHHHhhhhhhc---------cC-CceehhhhhhHHHHHHHHHHhhhHHHHH
Q 043313 90 FCVYNRQKKGRKIVA-IGLLGEVAFL---GVIAVITFVVF---------HN-TNTRTLFVGIICDIFNIIMYASPLSIWH 155 (240)
Q Consensus 90 ~~~y~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~---------~~-~~~~~~~lG~~~~~~~i~~~~Spl~~i~ 155 (240)
- .+.+. ..+.. ..+...++++ ..+..+.+... +. -+......=.+|.+.++.+..=-+-|-.
T Consensus 85 ~---~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~q~~f~~Rf~~Qw~ 160 (608)
T PRK01021 85 A---SSRPL-SVSKTLSLLVLSATAITLPFAIGTRYYPNMTWMASPNIFHLPLPPANLSWHLIGCIGLTIFSLRFFIQWF 160 (608)
T ss_pred c---ccccc-hHHHHHHHHHhhhHhhhhHHHHHHHHhcCcchhhhHHHhhCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 11111 11111 1111111111 11111222111 11 0223322223333333333322233332
Q ss_pred HHHhcCCCCccchHHHHHHHHhhHHHhhhhccccCeeEEeehHHHHHHHHHHHhheeee
Q 043313 156 KVIKTKSVEYMPFFLSLANFANGAVWTAYGLIKFDKFIVVSNGLGTVLGAIQLIIYGCY 214 (240)
Q Consensus 156 ~v~k~kst~~l~~~~~~~~~~~~~~W~~YG~l~~d~~i~~~N~~G~~l~~~~l~l~~~y 214 (240)
. -+++..+.+|......++.++.+=+.|++.++|...++.+..|++...-.+.+...-
T Consensus 161 ~-se~~~~s~~p~~FW~~s~~G~~~~l~Y~i~r~dpv~i~g~~~g~~~y~rnl~li~~~ 218 (608)
T PRK01021 161 Y-LEYNNQSALPALFWKASLLGGSLALLYFIRTGDPVNILCYGCGLFPSLANLRIAYKE 218 (608)
T ss_pred H-HHhcCCCCCcHHHHHHHHHhHHHHHHHHHHhCCceEEEccccchhHHHHHHHHHHhh
Confidence 2 244444577888889999999999999999999999999999999877766544333
No 13
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=96.42 E-value=0.0031 Score=36.99 Aligned_cols=28 Identities=21% Similarity=0.190 Sum_probs=23.6
Q ss_pred ccHHHHHHHHHhcCCCCCCchhHHHHHH
Q 043313 25 SPTPTFWRIIKRKDTEEFHPYAYICACM 52 (240)
Q Consensus 25 splp~i~~i~k~kst~~~s~~pf~~~~~ 52 (240)
+.+||+++++|+|+++++|+..+.+...
T Consensus 2 ~~~PQi~~~~~~ks~~glS~~~~~l~~~ 29 (32)
T smart00679 2 SLLPQIIKNYRRKSTEGLSILFVLLWLL 29 (32)
T ss_pred cchhHHHHHHHcCCcCcCCHHHHHHHHh
Confidence 5789999999999999999877765543
No 14
>PHA02246 hypothetical protein
Probab=96.31 E-value=0.32 Score=39.25 Aligned_cols=166 Identities=16% Similarity=0.190 Sum_probs=82.6
Q ss_pred HHHHHHHHhccHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhccccCC-CceEEeehhHHHHHHHHHHHHHHhhc
Q 043313 16 NVISFGLFLSPTPTFWRIIKRKDTEEFHPYAYICACMNCMFWILYGLPVVHPD-STLVVTINGVGLALELIYLSIFCVYN 94 (240)
Q Consensus 16 ~~~t~~~~~splp~i~~i~k~kst~~~s~~pf~~~~~n~~~Wl~YG~~~l~~d-~~~li~~N~~g~~~~~~y~~~~~~y~ 94 (240)
..-.++......|+...+.|.|+++++|-+ |+-.......--.|.+ ..+++ .+.++. -.....++...+.+- .|+
T Consensus 10 ~~yailit~gYipgL~slvk~~nv~GvS~~-FWYLi~~tvgiSfyNl-L~T~~~~fqi~s-vg~nl~lgivcLlv~-~~r 85 (192)
T PHA02246 10 ILYAILITVGYIPGLVALVKAESVKGVSNY-FWYLIVATVGISFYNL-LLTDASVFQIVS-VGLNLTLGIVCLLVA-SYR 85 (192)
T ss_pred HHHHHHHHhhhhhhHHHHhhhcccccHHHH-HHHHHHHHHHHHHHHH-HhcCCceEEEee-eehhhhhhhhheeee-hhh
Confidence 334445556689999999999999999754 4444455556667774 34433 143332 222233333333221 122
Q ss_pred cCchhhHHHHHHHHHHHHHHHHHHhhhhhhccCCceehhhhhhHHHHHHHHHHhhhHHHHHHHHhcCCCCccchHHHHHH
Q 043313 95 RQKKGRKIVAIGLLGEVAFLGVIAVITFVVFHNTNTRTLFVGIICDIFNIIMYASPLSIWHKVIKTKSVEYMPFFLSLAN 174 (240)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~~~~~i~~~~Spl~~i~~v~k~kst~~l~~~~~~~~ 174 (240)
+|.- ....... .+-..+ ....+..+..+. +|+ +....+..+|+.+-+|+|++|+.+...++..
T Consensus 86 kkd~----f~~~fii--ifSLll-----fll~~~~evtQt---Vat---~tIiLaYi~QIIqfyKTK~SEg~n~~l~lii 148 (192)
T PHA02246 86 KKDY----FSIPFII--VFSLLL-----FLLSDFTALTQT---VAT---ITIILAYVTQITTFYKTKSAEGTNRFLFLII 148 (192)
T ss_pred cccc----ccchHHH--HHHHHH-----HHHhhhHHHHHH---HHH---HHHHHHHHHHHHHHhhhcccCCCChhHHHHH
Confidence 2221 1111111 111011 111222222222 222 2233455799999999999999988776544
Q ss_pred HHhhHHHhhhhccccC--eeEEeehHHHHHH
Q 043313 175 FANGAVWTAYGLIKFD--KFIVVSNGLGTVL 203 (240)
Q Consensus 175 ~~~~~~W~~YG~l~~d--~~i~~~N~~G~~l 203 (240)
..+-.+ ........+ .+|+++.....++
T Consensus 149 ~~GL~~-L~~~m~Lthv~~hIiiTEf~N~iL 178 (192)
T PHA02246 149 GLGLAS-LIVSMVLTHTYVHIIATEFVNFVL 178 (192)
T ss_pred HHHHHH-HHHHHhhhCCcceeeHHHHHHHHH
Confidence 333222 333443333 4566664444443
No 15
>TIGR00951 2A43 Lysosomal Cystine Transporter.
Probab=96.28 E-value=0.022 Score=48.82 Aligned_cols=48 Identities=17% Similarity=0.090 Sum_probs=39.9
Q ss_pred hhhhHHHHHHHHHHhhhHHHHHHHHhcCCCCccchHHHHHHHHhhHHHhhh
Q 043313 134 FVGIICDIFNIIMYASPLSIWHKVIKTKSVEYMPFFLSLANFANGAVWTAY 184 (240)
Q Consensus 134 ~lG~~~~~~~i~~~~Spl~~i~~v~k~kst~~l~~~~~~~~~~~~~~W~~Y 184 (240)
.+|....+ +-..+.+||+.++.|+||++++|+........+...|..|
T Consensus 6 ~lG~~~~~---~~~~~~~PQi~~n~k~ks~~GlS~~~~~l~~~g~~~~~~y 53 (220)
T TIGR00951 6 ILGWGYVA---AWSISFYPQIIKNWRRKSAEGLSFDFVMLNLVGFTAYVIF 53 (220)
T ss_pred HHHHHHHH---HHHHHHhhHHHHHHhccccCCcCHHHHHHHHHHHHHHHHH
Confidence 34444444 4455668999999999999999999999999999999999
No 16
>smart00679 CTNS Repeated motif present between transmembrane helices in cystinosin, yeast ERS1p, mannose-P-dolichol utilization defect 1, and other hypothetical proteins. Function unknown, but likely to be associated with the glycosylation machinery.
Probab=95.47 E-value=0.014 Score=34.09 Aligned_cols=28 Identities=25% Similarity=0.161 Sum_probs=23.5
Q ss_pred hhHHHHHHHHhcCCCCccchHHHHHHHH
Q 043313 149 SPLSIWHKVIKTKSVEYMPFFLSLANFA 176 (240)
Q Consensus 149 Spl~~i~~v~k~kst~~l~~~~~~~~~~ 176 (240)
+.+||+.+++|+|+++++|+...+..+.
T Consensus 2 ~~~PQi~~~~~~ks~~glS~~~~~l~~~ 29 (32)
T smart00679 2 SLLPQIIKNYRRKSTEGLSILFVLLWLL 29 (32)
T ss_pred cchhHHHHHHHcCCcCcCCHHHHHHHHh
Confidence 5689999999999999999887765444
No 17
>KOG2489 consensus Transmembrane protein [General function prediction only]
Probab=91.70 E-value=2.4 Score=40.42 Aligned_cols=198 Identities=18% Similarity=0.088 Sum_probs=132.9
Q ss_pred HHHHHHHHHhccHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhccccCC-CceEEeehhHHHHHHHHHHHH----
Q 043313 15 GNVISFGLFLSPTPTFWRIIKRKDTEEFHPYAYICACMNCMFWILYGLPVVHPD-STLVVTINGVGLALELIYLSI---- 89 (240)
Q Consensus 15 ~~~~t~~~~~splp~i~~i~k~kst~~~s~~pf~~~~~n~~~Wl~YG~~~l~~d-~~~li~~N~~g~~~~~~y~~~---- 89 (240)
..+-++.=+++.=-++.=+.|+||.+++|.-..+.-++++.+=++|= +.++ .+.+.++-.+|..+++.=+--
T Consensus 325 S~lH~vFdfLAFKNDIqFWn~rKsmeGLS~rsvl~~~F~s~IIflYl---lDneTs~mVlvs~gvG~~IE~WKi~K~m~v 401 (592)
T KOG2489|consen 325 SILHSVFDFLAFKNDIQFWNKRKSMEGLSVRSVLWRCFSSLIIFLYL---LDNETSFMVLVSVGVGLLIELWKIKKAMKV 401 (592)
T ss_pred HHHHHHHHHHHhcchHHHhccccccccccHHHHHHHHHHHHhhhhee---ecCCccEEEEEeccceeeeeeeecceEEEE
Confidence 33444555666667888899999999999999999999999999998 5543 377777888888775421110
Q ss_pred --------H-----------HhhccCch--hhHHHHHHHHHHHH-HHHHHHhhhhhhccCCceehhhhhhHHHHHHHHHH
Q 043313 90 --------F-----------CVYNRQKK--GRKIVAIGLLGEVA-FLGVIAVITFVVFHNTNTRTLFVGIICDIFNIIMY 147 (240)
Q Consensus 90 --------~-----------~~y~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~lG~~~~~~~i~~~ 147 (240)
. -.|+.++. +-...++.+...+. ++.+.++|.+...+-+.-...++..+.+..-.+-|
T Consensus 402 ~id~~g~i~gv~pRl~f~dkgsysE~~Tk~yD~~A~kYLs~~L~PL~vg~aVYSLlY~~hKsWYSWvLn~l~~~vy~FGF 481 (592)
T KOG2489|consen 402 EIDWSGLIPGVLPRLSFSDKGSYSESKTKEYDDQAMKYLSYLLFPLLVGGAVYSLLYVEHKSWYSWVLNSLYNGVYAFGF 481 (592)
T ss_pred EEecccccccccccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHhHHHHHHH
Confidence 0 01111111 11123333333222 33345556655555556667788888888877788
Q ss_pred hhhHHHHHHHHhcCCCCccchHHHHHHHHhhHHHhhhhccc------------cCeeEEeehHHHHHHHHHHHhheeeee
Q 043313 148 ASPLSIWHKVIKTKSVEYMPFFLSLANFANGAVWTAYGLIK------------FDKFIVVSNGLGTVLGAIQLIIYGCYY 215 (240)
Q Consensus 148 ~Spl~~i~~v~k~kst~~l~~~~~~~~~~~~~~W~~YG~l~------------~d~~i~~~N~~G~~l~~~~l~l~~~y~ 215 (240)
.-.+||+--+.|=||++.+|..++.=-++|.+.==++++.+ +|. |+ ++|+..-|.||
T Consensus 482 i~M~PQLFINYKLKSVAHLPWR~~tYKa~NTFIDDlFAFVIkMPt~hRl~CfRDDI-VF----------lIYLYQRWlYp 550 (592)
T KOG2489|consen 482 IFMLPQLFINYKLKSVAHLPWRAFTYKAFNTFIDDLFAFVIKMPTLHRLACFRDDI-VF----------LIYLYQRWLYP 550 (592)
T ss_pred HHhChHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccce-EE----------Eeeehhhhccc
Confidence 88899999999999999999999888888876544444433 342 11 24677789999
Q ss_pred CCCCCCCCCcc
Q 043313 216 KSTPKKGSGDV 226 (240)
Q Consensus 216 ~~~~~~~~~~~ 226 (240)
-+++|+++-+.
T Consensus 551 VD~tRvNEfG~ 561 (592)
T KOG2489|consen 551 VDKTRVNEFGE 561 (592)
T ss_pred cChhhhhhccc
Confidence 99988865333
No 18
>KOG3211 consensus Predicted endoplasmic reticulum membrane protein Lec35/MPDU1 involved in monosaccharide-P-dolichol utilization [General function prediction only]
Probab=90.64 E-value=0.48 Score=40.08 Aligned_cols=76 Identities=12% Similarity=0.060 Sum_probs=63.1
Q ss_pred HHHhccHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhccccCCCceEEeehhHHHHHHHHHHHHHHhhccCch
Q 043313 21 GLFLSPTPTFWRIIKRKDTEEFHPYAYICACMNCMFWILYGLPVVHPDSTLVVTINGVGLALELIYLSIFCVYNRQKK 98 (240)
Q Consensus 21 ~~~~splp~i~~i~k~kst~~~s~~pf~~~~~n~~~Wl~YG~~~l~~d~~~li~~N~~g~~~~~~y~~~~~~y~~~~~ 98 (240)
....+.++|+..-+|+|++|+.|.....+.+..|..=+.+. ....+++.+...-.+...++-+...-.++|.++..
T Consensus 152 i~v~sr~~Qi~~n~~~~~tgqls~it~fLsf~g~lARifts--iq~t~d~~mll~~v~s~~~Ng~i~aq~l~Y~s~~~ 227 (230)
T KOG3211|consen 152 IVVVSRLLQIQCNYHNRSTGQLSLITVFLSFGGCLARIFTS--IQETGDFLMLLRFVISLALNGLITAQVLRYWSTAI 227 (230)
T ss_pred hhhHHHHHHHHHHhcccccchhHHHHHHHHhhhHHHHHHHH--HHhcCChhhHHHHHHHHHHhHHHHHHHHHHHhcCC
Confidence 34478999999999999999999999999999999999999 55554488887888888888877777777765543
No 19
>KOG1589 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.08 E-value=0.06 Score=40.67 Aligned_cols=65 Identities=20% Similarity=0.260 Sum_probs=55.8
Q ss_pred cCCCCccchHHHHHHHHhhHHHhhhhccc--cCeeEEeehHHHHHHHHHHHhheeeeeCCCCCCCCC
Q 043313 160 TKSVEYMPFFLSLANFANGAVWTAYGLIK--FDKFIVVSNGLGTVLGAIQLIIYGCYYKSTPKKGSG 224 (240)
Q Consensus 160 ~kst~~l~~~~~~~~~~~~~~W~~YG~l~--~d~~i~~~N~~G~~l~~~~l~l~~~y~~~~~~~~~~ 224 (240)
+|..|.+|.....+.+..+..|+-|.+.+ +|+..+..|..=.+.+++|+.=.+.|.....+.+.+
T Consensus 43 arP~eklS~~q~~al~aTg~IWtRySlVI~PkN~~LfsVN~f~~~tg~~QL~Ri~~y~~~~~~~~~~ 109 (118)
T KOG1589|consen 43 ARPPEKLSYAQNAALTATGLIWTRYSLVITPKNYSLFSVNFFVAITGIYQLTRIANYQQQQKALEGE 109 (118)
T ss_pred cCChHHcChhhhHHHHHhhhhheeeeEEEeccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 57888999999999999999999999986 589999999999999999999999996555555443
No 20
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=89.97 E-value=0.074 Score=41.05 Aligned_cols=60 Identities=20% Similarity=0.180 Sum_probs=52.2
Q ss_pred cCCCCccchHHHHHHHHhhHHHhhhhcccc--CeeEEeehHHHHHHHHHHHhheeeeeCCCC
Q 043313 160 TKSVEYMPFFLSLANFANGAVWTAYGLIKF--DKFIVVSNGLGTVLGAIQLIIYGCYYKSTP 219 (240)
Q Consensus 160 ~kst~~l~~~~~~~~~~~~~~W~~YG~l~~--d~~i~~~N~~G~~l~~~~l~l~~~y~~~~~ 219 (240)
+|..|.+|..+..+.++-+.+|+-|++.+. |+.++..|..-...+++|+.=++.|...+.
T Consensus 39 ~rppe~IS~~qt~aL~~tg~iw~Rys~~I~P~Ny~L~a~n~~~~~~q~~Ql~R~~~y~~~~~ 100 (119)
T PF03650_consen 39 KRPPEKISGPQTSALCATGLIWMRYSLVITPRNYLLFACNFFNATTQLYQLYRKLNYQYSQK 100 (119)
T ss_pred CCCHHHHhHHHHHHHHHHHHHHHHHheeecCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 689999999999999999999999999874 788888899999999999988887755443
No 21
>PHA02246 hypothetical protein
Probab=88.99 E-value=3.7 Score=33.26 Aligned_cols=67 Identities=10% Similarity=0.165 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhccccCCCceEEeehhHHH
Q 043313 9 NIVGIIGNVISFGLFLSPTPTFWRIIKRKDTEEFHPYAYICACMNCMFWILYGLPVVHPDSTLVVTINGVGL 80 (240)
Q Consensus 9 ~i~~~l~~~~t~~~~~splp~i~~i~k~kst~~~s~~pf~~~~~n~~~Wl~YG~~~l~~d~~~li~~N~~g~ 80 (240)
++-...|+.. ..++-+||+.+-+|+|+.||.|+.-|+....+-.+=..-- .+++-..-++.+-....
T Consensus 110 evtQtVat~t---IiLaYi~QIIqfyKTK~SEg~n~~l~lii~~GL~~L~~~m--~Lthv~~hIiiTEf~N~ 176 (192)
T PHA02246 110 ALTQTVATIT---IILAYVTQITTFYKTKSAEGTNRFLFLIIGLGLASLIVSM--VLTHTYVHIIATEFVNF 176 (192)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHhhhcccCCCChhHHHHHHHHHHHHHHHH--hhhCCcceeeHHHHHHH
Confidence 3334444443 3466899999999999999999988886655544433333 34554345555444443
No 22
>KOG2913 consensus Predicted membrane protein [Function unknown]
Probab=85.48 E-value=2 Score=37.72 Aligned_cols=55 Identities=9% Similarity=-0.059 Sum_probs=43.8
Q ss_pred hhHHHHHHHHHHhhhHHHHHHHHhcCCCCccchHHHHHHHHhhHHHhhhhccccC
Q 043313 136 GIICDIFNIIMYASPLSIWHKVIKTKSVEYMPFFLSLANFANGAVWTAYGLIKFD 190 (240)
Q Consensus 136 G~~~~~~~i~~~~Spl~~i~~v~k~kst~~l~~~~~~~~~~~~~~W~~YG~l~~d 190 (240)
..++++++++--.+-.||+.++.|+|+.+++|+.+.+...++.+.-..|..+.+-
T Consensus 10 ~~~g~ls~~~w~v~~iPqi~~n~r~Ks~~glS~lfl~~Wligdi~nl~g~~l~~~ 64 (260)
T KOG2913|consen 10 TILGILSTVCWCVQLIPQIIENYRRKSTEGLSPLFLLTWLIGDIFNLVGFFLQPL 64 (260)
T ss_pred HHHHHHHHHhhhhhhhhHHHHhhhccccCCCCHHHHHHHHHccHHHHHHHHhccc
Confidence 3445555555556668999999999999999999999888888888888877764
No 23
>KOG3145 consensus Cystine transporter Cystinosin [Amino acid transport and metabolism]
Probab=83.63 E-value=2.9 Score=37.47 Aligned_cols=208 Identities=13% Similarity=0.023 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCCCCchhHHH--------HHHHHHHHHHHhhccccCC-------
Q 043313 4 AEAARNIVGIIGNVISFGLFLSPTPTFWRIIKRKDTEEFHPYAYIC--------ACMNCMFWILYGLPVVHPD------- 68 (240)
Q Consensus 4 ~~~~~~i~~~l~~~~t~~~~~splp~i~~i~k~kst~~~s~~pf~~--------~~~n~~~Wl~YG~~~l~~d------- 68 (240)
+.....+-.++|.+.-+.=-.|.-||++--+|+||+.++|+.-... ...|+. +.|.. .++++
T Consensus 117 S~~l~il~~IvGwvYf~aWSISfYPqii~N~RrKSv~gLnfDFv~LNl~Gfs~y~ifn~~--ly~~~-~iq~~y~~~~p~ 193 (372)
T KOG3145|consen 117 SIALVILDQIVGWVYFVAWSISFYPQIILNWRRKSVVGLNFDFVMLNLTGFSAYSIFNFL--LYYCP-KIQNQYDTSYPL 193 (372)
T ss_pred hhhHHHHHhhhheeEEEEEeeeechHHHhhhhhcceeccccceeeehhhhhHHHHHHHHH--HHhcH-HhccceeccCCC
Confidence 3344444445554443334457789999999999999988643221 122221 22221 22332
Q ss_pred -CceEEee----hhHHHHHHHHHHHHHHhhccCchhhH-H-HHHHHHHHHHHHHHHHhhhhhhccCCceehhhhhhHHHH
Q 043313 69 -STLVVTI----NGVGLALELIYLSIFCVYNRQKKGRK-I-VAIGLLGEVAFLGVIAVITFVVFHNTNTRTLFVGIICDI 141 (240)
Q Consensus 69 -~~~li~~----N~~g~~~~~~y~~~~~~y~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~~~ 141 (240)
..|+..- ..=++++.++-+.-...|.+..+ |. + +..-......+++..+.+... . .+. .-+-.+-..
T Consensus 194 g~~pv~~nDv~fslHa~lmt~Iti~Qc~~yeR~~q-~vs~~ialgil~i~~~f~~~~~~va~-~--~~~--~wL~f~~~~ 267 (372)
T KOG3145|consen 194 GVPPVTLNDVVFSLHAVLMTVITILQCFFYERGWQ-RVSKGIALGILAIFWLFAVVFMYVAY-W--YVI--RWLAFLNNL 267 (372)
T ss_pred CCCccchhhhhhhHHHHHHHHHHHHHHHhhhhccc-ccchhHHHHHHHHHHHHHHHHHHHhh-H--HHH--HHHHHHHHH
Confidence 1232211 12245555555555566665554 21 1 111111111111111111111 0 010 112222222
Q ss_pred HHHH---HHhhhHHHHHHHHhcCCCCccchHHHH----HHHHhhHHHhhhhccccCeeEEee-------hHHHHHHHHHH
Q 043313 142 FNII---MYASPLSIWHKVIKTKSVEYMPFFLSL----ANFANGAVWTAYGLIKFDKFIVVS-------NGLGTVLGAIQ 207 (240)
Q Consensus 142 ~~i~---~~~Spl~~i~~v~k~kst~~l~~~~~~----~~~~~~~~W~~YG~l~~d~~i~~~-------N~~G~~l~~~~ 207 (240)
..+= ...-.+||.+...++||+++-|..=.+ .+.++-..-..-..-.+||--+.. ..+.+++.++.
T Consensus 268 syiKl~mTliKYiPQa~mN~tRKSt~gwsIgnIlLDfTGG~~slLQMilQ~~N~~sw~~f~gnp~KfGLg~vSi~FdiiF 347 (372)
T KOG3145|consen 268 SYIKLAMTLIKYIPQAYMNFTRKSTVGWSIGNILLDFTGGTASLLQMILQSSNDNSWDTFYGNPGKFGLGLVSIFFDIIF 347 (372)
T ss_pred HHHHHHHHHHHhhhHHhhcceeccccccccccEEEEecccHHHHHHHHHHHhccccHHHHhcCchhhhhhhHHHHHHHHH
Confidence 2211 133347999999999999987754322 122222112222222233433332 45556677777
Q ss_pred HhheeeeeCCCCC
Q 043313 208 LIIYGCYYKSTPK 220 (240)
Q Consensus 208 l~l~~~y~~~~~~ 220 (240)
+...+.+.++++.
T Consensus 348 m~QhyVly~~~~~ 360 (372)
T KOG3145|consen 348 MMQHYVLYPRGHV 360 (372)
T ss_pred HhhheeEeccccc
Confidence 7777777665543
No 24
>PF03650 MPC: Uncharacterised protein family (UPF0041); InterPro: IPR005336 This is a family of proteins of unknown function.
Probab=82.30 E-value=1 Score=34.83 Aligned_cols=62 Identities=21% Similarity=0.343 Sum_probs=51.8
Q ss_pred hcCCCCCCchhHHHHHHHHHHHHHHhhccccCCCceEEeehhHHHHHHHHHHHHHHhhccCch
Q 043313 36 RKDTEEFHPYAYICACMNCMFWILYGLPVVHPDSTLVVTINGVGLALELIYLSIFCVYNRQKK 98 (240)
Q Consensus 36 ~kst~~~s~~pf~~~~~n~~~Wl~YG~~~l~~d~~~li~~N~~g~~~~~~y~~~~~~y~~~~~ 98 (240)
+|..+.+|.-+-...++.+.+|..|.+ ..+.....++.+|.+-...+.+.+.=++.|....+
T Consensus 39 ~rppe~IS~~qt~aL~~tg~iw~Rys~-~I~P~Ny~L~a~n~~~~~~q~~Ql~R~~~y~~~~~ 100 (119)
T PF03650_consen 39 KRPPEKISGPQTSALCATGLIWMRYSL-VITPRNYLLFACNFFNATTQLYQLYRKLNYQYSQK 100 (119)
T ss_pred CCCHHHHhHHHHHHHHHHHHHHHHHhe-eecCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 589999999999999999999999996 34444488999999999999998887777754443
No 25
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=82.18 E-value=3.1 Score=29.31 Aligned_cols=53 Identities=15% Similarity=0.303 Sum_probs=39.0
Q ss_pred HHHHHHHHhcCCCCccchHHHHHHHHhhHHHhhhhccccCeeEEeehHHHHHHH
Q 043313 151 LSIWHKVIKTKSVEYMPFFLSLANFANGAVWTAYGLIKFDKFIVVSNGLGTVLG 204 (240)
Q Consensus 151 l~~i~~v~k~kst~~l~~~~~~~~~~~~~~W~~YG~l~~d~~i~~~N~~G~~l~ 204 (240)
+-|-..--|+| .+.+|......+..++.+=..||+.++|...++....|....
T Consensus 14 ~~QW~~SEk~k-~sv~P~~FW~lSl~Gs~lll~Y~i~r~DpV~ilgq~~gl~iy 66 (72)
T PF07578_consen 14 IVQWIYSEKAK-KSVVPVAFWYLSLIGSLLLLIYAIIRKDPVFILGQSFGLFIY 66 (72)
T ss_pred HHHHHHHHHcC-CCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHhcChHHH
Confidence 34443333333 346788888999999999999999999997777777776553
No 26
>COG3952 Predicted membrane protein [Function unknown]
Probab=80.70 E-value=4.4 Score=30.58 Aligned_cols=64 Identities=13% Similarity=0.138 Sum_probs=52.2
Q ss_pred HHHhcCCCCccchHHHHHHHHhhHHHhhhhccccCeeEEeehHHHHHHHHHHHhheeeeeCCCC
Q 043313 156 KVIKTKSVEYMPFFLSLANFANGAVWTAYGLIKFDKFIVVSNGLGTVLGAIQLIIYGCYYKSTP 219 (240)
Q Consensus 156 ~v~k~kst~~l~~~~~~~~~~~~~~W~~YG~l~~d~~i~~~N~~G~~l~~~~l~l~~~y~~~~~ 219 (240)
-..+.++.+.+|.+.--++.+++.+-+.|-+-++|..=+..|..|+..++..+-+...-++.|+
T Consensus 46 ~~se~a~rsv~P~~FW~~sllGg~l~L~Yfi~~~DpV~Vl~~~~glF~~l~nL~L~~ker~~~~ 109 (113)
T COG3952 46 LASEHANRSVIPVLFWYFSLLGGLLLLSYFIRRQDPVFVLGQACGLFIYLRNLWLIIKERRWKP 109 (113)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhHHHHHHHHHhcchHHHHHHhhhHHHHHHHHHHHHHHhcccC
Confidence 3457778888999999999999999999999999987778899999998887766655544443
No 27
>PF10688 Imp-YgjV: Bacterial inner membrane protein; InterPro: IPR019629 This entry represents inner membrane proteins, many are YgjV proteins. Their function is unknown.
Probab=77.75 E-value=11 Score=30.57 Aligned_cols=36 Identities=11% Similarity=0.092 Sum_probs=30.8
Q ss_pred HHHHHhhHHHhhhhccccCeeEEeehHHHHHHHHHH
Q 043313 172 LANFANGAVWTAYGLIKFDKFIVVSNGLGTVLGAIQ 207 (240)
Q Consensus 172 ~~~~~~~~~W~~YG~l~~d~~i~~~N~~G~~l~~~~ 207 (240)
....+++.+|..|++..++++-...|..-...+.+.
T Consensus 118 ~~~l~~~~~w~~~n~~igS~~g~l~e~~~~~~n~~~ 153 (163)
T PF10688_consen 118 ILMLVGTLCWLIYNILIGSWGGTLMEALFIISNLIT 153 (163)
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 457999999999999999998888888888777764
No 28
>KOG1589 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.67 E-value=3.3 Score=31.44 Aligned_cols=58 Identities=16% Similarity=0.258 Sum_probs=50.1
Q ss_pred hcCCCCCCchhHHHHHHHHHHHHHHhhccccCCCceEEeehhHHHHHHHHHHHHHHhhc
Q 043313 36 RKDTEEFHPYAYICACMNCMFWILYGLPVVHPDSTLVVTINGVGLALELIYLSIFCVYN 94 (240)
Q Consensus 36 ~kst~~~s~~pf~~~~~n~~~Wl~YG~~~l~~d~~~li~~N~~g~~~~~~y~~~~~~y~ 94 (240)
+|..+.+|.......+....+|..|.+ ..+...+.++.+|.+=...+.+.+.=.+.|.
T Consensus 43 arP~eklS~~q~~al~aTg~IWtRySl-VI~PkN~~LfsVN~f~~~tg~~QL~Ri~~y~ 100 (118)
T KOG1589|consen 43 ARPPEKLSYAQNAALTATGLIWTRYSL-VITPKNYSLFSVNFFVAITGIYQLTRIANYQ 100 (118)
T ss_pred cCChHHcChhhhHHHHHhhhhheeeeE-EEeccchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999996 4555448899999999999999988888774
No 29
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=71.55 E-value=7.3 Score=27.43 Aligned_cols=58 Identities=14% Similarity=0.237 Sum_probs=34.4
Q ss_pred HHHHHhccHHHHHHHHHhcCCCCCCchhHH-HHHHHHHHHHHHhhccccCCCceEEeehhHHHH
Q 043313 19 SFGLFLSPTPTFWRIIKRKDTEEFHPYAYI-CACMNCMFWILYGLPVVHPDSTLVVTINGVGLA 81 (240)
Q Consensus 19 t~~~~~splp~i~~i~k~kst~~~s~~pf~-~~~~n~~~Wl~YG~~~l~~d~~~li~~N~~g~~ 81 (240)
.++...--+-|-....|+|+. +-|..|+ +...++.+-+.|| +..+| +..+.....|.+
T Consensus 6 q~lF~~Rf~~QW~~SEk~k~s--v~P~~FW~lSl~Gs~lll~Y~--i~r~D-pV~ilgq~~gl~ 64 (72)
T PF07578_consen 6 QLLFSSRFIVQWIYSEKAKKS--VVPVAFWYLSLIGSLLLLIYA--IIRKD-PVFILGQSFGLF 64 (72)
T ss_pred HHHHHHHHHHHHHHHHHcCCC--CCcHHHHHHHHHHHHHHHHHH--HHHcC-hHHHHHHhcChH
Confidence 333333445555555554443 3444454 7788999999999 78888 544444444443
No 30
>PF10688 Imp-YgjV: Bacterial inner membrane protein; InterPro: IPR019629 This entry represents inner membrane proteins, many are YgjV proteins. Their function is unknown.
Probab=64.95 E-value=5.8 Score=32.29 Aligned_cols=36 Identities=14% Similarity=0.264 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhhccccCCCceEEeehhHHHHHHHHH
Q 043313 48 ICACMNCMFWILYGLPVVHPDSTLVVTINGVGLALELIY 86 (240)
Q Consensus 48 ~~~~~n~~~Wl~YG~~~l~~d~~~li~~N~~g~~~~~~y 86 (240)
.....++.+|+.|+ ++.++ ++....|......+.+.
T Consensus 118 ~~~l~~~~~w~~~n--~~igS-~~g~l~e~~~~~~n~~~ 153 (163)
T PF10688_consen 118 ILMLVGTLCWLIYN--ILIGS-WGGTLMEALFIISNLIT 153 (163)
T ss_pred HHHHHHHHHHHHHH--HHHcC-HHHHHHHHHHHHHHHHH
Confidence 35889999999999 78887 77777888888777643
No 31
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=63.76 E-value=1.6e+02 Score=29.19 Aligned_cols=48 Identities=21% Similarity=0.431 Sum_probs=35.5
Q ss_pred hccHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhccccCCCceEEeehhHHHHHHH
Q 043313 24 LSPTPTFWRIIKRKDTEEFHPYAYICACMNCMFWILYGLPVVHPDSTLVVTINGVGLALEL 84 (240)
Q Consensus 24 ~splp~i~~i~k~kst~~~s~~pf~~~~~n~~~Wl~YG~~~l~~d~~~li~~N~~g~~~~~ 84 (240)
..|+..+-+++-.=+-++++|.|++..++ ++.+| ++-+| =..|+++-+
T Consensus 326 ~~pFE~lv~mYg~P~Y~EiDPT~~~ai~f----~lfFG--mM~gD-------~GyGLil~l 373 (646)
T PRK05771 326 IKPFESLTEMYSLPKYNEIDPTPFLAIFF----PLFFG--MMLGD-------AGYGLLLLL 373 (646)
T ss_pred hhhHHHHHHHcCCCCCCCcCCccHHHHHH----HHHHH--HHHHh-------HHHHHHHHH
Confidence 45677777777778888999999987654 77788 67778 345666665
No 32
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=55.37 E-value=2.4e+02 Score=28.59 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhccHHHHHHHHHhcCCCCC
Q 043313 14 IGNVISFGLFLSPTPTFWRIIKRKDTEEF 42 (240)
Q Consensus 14 l~~~~t~~~~~splp~i~~i~k~kst~~~ 42 (240)
+|...+..+ -+|.+....+++..++-
T Consensus 222 lg~~lsa~~---llP~~~~~l~~~r~~~~ 247 (843)
T PF09586_consen 222 LGVGLSAFL---LLPTILSLLQSKRSGGS 247 (843)
T ss_pred HHHHHHHHH---HHHHHHHHHhCCCccCC
Confidence 444444333 47999998888888775
No 33
>PF10277 Frag1: Frag1/DRAM/Sfk1 family; InterPro: IPR019402 This entry includes Frag1, DRAM and Sfk1 proteins. Frag1 (FGF receptor activating protein 1) is a protein that is conserved from fungi to humans. There are four potential iso-prenylation sites throughout the peptide, CILW (x2), CIIW and CIGL. Frag1 is a membrane-spanning protein that is ubiquitously expressed in adult tissues suggesting an important cellular function []. DRAM is a family of proteins conserved from nematodes to humans with six hydrophobic transmembrane regions and an endoplasmic reticulum signal peptide. It is a lysosomal protein that induces macro-autophagy as an effector of p53-mediated death, where p53 is the tumour-suppressor gene that is frequently mutated in cancer. Expression of DRAM is stress-induced []. This region is also part of a family of small plasma membrane proteins, referred to as Sfk1, that may act together with or upstream of Stt4p to generate normal levels of the essential phospholipid PI4P, thus allowing proper localisation of Stt4p to the actin cytoskeleton [, ].
Probab=47.82 E-value=1.5e+02 Score=24.09 Aligned_cols=111 Identities=14% Similarity=0.193 Sum_probs=54.9
Q ss_pred CCchhHHHHHHHHHHHHHHhhccccCCCceEEeehhHHHHH--------HHHHHHHHHhhccC--c-hhhHHHHHHHHHH
Q 043313 42 FHPYAYICACMNCMFWILYGLPVVHPDSTLVVTINGVGLAL--------ELIYLSIFCVYNRQ--K-KGRKIVAIGLLGE 110 (240)
Q Consensus 42 ~s~~pf~~~~~n~~~Wl~YG~~~l~~d~~~li~~N~~g~~~--------~~~y~~~~~~y~~~--~-~~~~~~~~~~~~~ 110 (240)
.+...++++.+.+..-...+ ....+..+ .....|... ........+++.++ + .++....|.....
T Consensus 90 l~~~~~~~g~~~~~gl~~~a--~~~~~~~~--~~H~~~a~~ff~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 165 (215)
T PF10277_consen 90 LNILSLVFGLLSAIGLILLA--IFQSTEHP--TVHYIGAVLFFVSSFIYMLLQTILSYRLGPHYSNKSRRSFRLRLILLV 165 (215)
T ss_pred HHHHHHHHHHHHHHHHHHhh--hhccccCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhHHHHHHHHH
Confidence 78888888888888888888 45433232 234444333 22333444444432 1 1122233333322
Q ss_pred HHHHHHHHhhhhhhccCCc---eehhhhhhHHHHHHHHHHhhhHHHHHH
Q 043313 111 VAFLGVIAVITFVVFHNTN---TRTLFVGIICDIFNIIMYASPLSIWHK 156 (240)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~---~~~~~lG~~~~~~~i~~~~Spl~~i~~ 156 (240)
....+.+........+..+ ....+..........+.+.+-..|+++
T Consensus 166 ~~~i~~i~~~~~~~~~~~~~~~~~~ai~Ew~~~~~~~~f~~t~~~df~~ 214 (215)
T PF10277_consen 166 ISIICFISFIVFFILHNFYGAYSIFAIFEWVLVFSNILFFLTFAYDFKK 214 (215)
T ss_pred HHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2222222222222222222 455556667777777777776666654
No 34
>TIGR00341 conserved hypothetical protein TIGR00341. This conserved hypothetical protein is found so far only in three archaeal genomes and in Streptomyces coelicolor. It shares a hydrophobic uncharacterized domain (see model TIGR00271) of about 180 residues with several eubacterial proteins, including the much longer protein sll1151 of Synechocystis PCC6803.
Probab=47.29 E-value=1.9e+02 Score=26.31 Aligned_cols=71 Identities=8% Similarity=-0.108 Sum_probs=38.6
Q ss_pred HhhhHHHHHHHHhcCCCCccchHHH-------HHHHHhhHHHhhhhccccCeeEEeehHHHHHHHHHHHhheeeeeCCC
Q 043313 147 YASPLSIWHKVIKTKSVEYMPFFLS-------LANFANGAVWTAYGLIKFDKFIVVSNGLGTVLGAIQLIIYGCYYKST 218 (240)
Q Consensus 147 ~~Spl~~i~~v~k~kst~~l~~~~~-------~~~~~~~~~W~~YG~l~~d~~i~~~N~~G~~l~~~~l~l~~~y~~~~ 218 (240)
.++.........++++ +.++.... .+.+.-+..|--+....+-...+..|.+|+.++..-.+.++-|++++
T Consensus 216 l~aG~AGalsl~~~~s-~aLvGVaIAvaLvPPa~~~Gi~la~g~~~~a~ga~~L~~~Nl~~I~la~~~vf~~~g~~p~~ 293 (325)
T TIGR00341 216 VLAGIAGILSLSSGIL-ESLAGVAISASLLPPAVATGILLVISPLPLAVKSLILTLINVAGLMAGSLAGVYVYGIRAYR 293 (325)
T ss_pred HHHHHHHHHHHhhccc-cchHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch
Confidence 3344444555555554 34443332 33333333343333444445566789999999887777666665544
No 35
>PF13965 SID-1_RNA_chan: dsRNA-gated channel SID-1
Probab=44.39 E-value=3.2e+02 Score=26.88 Aligned_cols=154 Identities=13% Similarity=0.156 Sum_probs=70.5
Q ss_pred HHHHHhccHHHHHHHHHhcCCCCCCchhHHHHHHHHHH--HHHHhhccccCC-CceEEeehhHHHHHHHHHHHHHHhhcc
Q 043313 19 SFGLFLSPTPTFWRIIKRKDTEEFHPYAYICACMNCMF--WILYGLPVVHPD-STLVVTINGVGLALELIYLSIFCVYNR 95 (240)
Q Consensus 19 t~~~~~splp~i~~i~k~kst~~~s~~pf~~~~~n~~~--Wl~YG~~~l~~d-~~~li~~N~~g~~~~~~y~~~~~~y~~ 95 (240)
|..|+.-..--+.+++++|+ ++.+.-.|....+-+.. =..-| .+.++ .+.++. .+--+..+.++...++|..
T Consensus 346 t~fmyvi~~L~~lkiyq~RH-~di~a~a~~~f~~~av~i~~~~~g--v~~~~~~f~iiF--~ii~i~~~~~ls~q~Yy~g 420 (570)
T PF13965_consen 346 TSFMYVIAGLCMLKIYQKRH-PDINASAYAAFAVFAVVIFLGLIG--VLEKSSIFWIIF--SIIHILSCFFLSLQIYYMG 420 (570)
T ss_pred HHHHHHHHHHHHHHHHHhhC-CCCchhHHHHHHHHHHHHHHHhhh--heeccceehhHH--HHHHHHHHHHHHhhheeee
Confidence 34555555666788888998 45544444433222221 12223 22222 222222 1212223334444444433
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHhhhhhhccCCceehhhhhhHHHHHHHHHHhhhHHHHHHHHhcCCCCccchHHHHHHH
Q 043313 96 QKKGRKIVAIGLLGEVAFLGVIAVITFVVFHNTNTRTLFVGIICDIFNIIMYASPLSIWHKVIKTKSVEYMPFFLSLANF 175 (240)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~~~~~i~~~~Spl~~i~~v~k~kst~~l~~~~~~~~~ 175 (240)
+.+.+.|...... .++-. .+..+... .++.|-..-.++.. +.+.++|..- +-+.|=++.|.+...+.+...
T Consensus 421 ~~~~~~r~~~l~~-~i~N~-~~~~~gl~-~~~~df~~~~l~i~--i~n~~lY~~f----YiimKi~~~E~i~~~~~~~~~ 491 (570)
T PF13965_consen 421 RWKLKSRFFLLVL-NIINW-ALAIYGLI-SSPRDFASFLLAIF--IGNLLLYLFF----YIIMKIRHREKILLKPIIYLV 491 (570)
T ss_pred eccccchhhhhhH-HHHHH-HHHHHHHh-cCcCcHHHHHHHHH--HHHHHHHHHH----HHHHHHhhcChhHHHHHHHHH
Confidence 3221112222111 11111 11122222 34445444455554 4666666543 333344566777788888888
Q ss_pred HhhHHHhhhhc
Q 043313 176 ANGAVWTAYGL 186 (240)
Q Consensus 176 ~~~~~W~~YG~ 186 (240)
+..+.|..=++
T Consensus 492 ~~~~~W~~a~y 502 (570)
T PF13965_consen 492 LAFVSWGFALY 502 (570)
T ss_pred HHHHHHHHHHH
Confidence 88889976443
No 36
>PF15102 TMEM154: TMEM154 protein family
Probab=39.59 E-value=47 Score=26.63 Aligned_cols=31 Identities=16% Similarity=0.118 Sum_probs=20.3
Q ss_pred eEEeehHHHHHHHHHHHhheeeeeCCCCCCC
Q 043313 192 FIVVSNGLGTVLGAIQLIIYGCYYKSTPKKG 222 (240)
Q Consensus 192 ~i~~~N~~G~~l~~~~l~l~~~y~~~~~~~~ 222 (240)
.|++|-+++.++-+.-+++..+|+|+++|.+
T Consensus 60 mIlIP~VLLvlLLl~vV~lv~~~kRkr~K~~ 90 (146)
T PF15102_consen 60 MILIPLVLLVLLLLSVVCLVIYYKRKRTKQE 90 (146)
T ss_pred EEeHHHHHHHHHHHHHHHheeEEeecccCCC
Confidence 4557777776666666777777766665554
No 37
>PF05602 CLPTM1: Cleft lip and palate transmembrane protein 1 (CLPTM1); InterPro: IPR008429 Clefts of the lip and/or palate (CL/P) are some of the most common birth defects. They may be categorised into syndromic or non-syndromic types, with syndromic defects having an underlying chromosomal or teratogenic cause. Around 70% of clefts are non-syndromic and individuals have no typical physical or developmental abnormalities; these clefts generally show polygenetic behaviour and complex inheritance []. Studies have identified regions on chromosomes 19 and 11 which may be involved in non-syndromic cleft lip and palates; this included a novel gene on chromosome 19, cleft lip and palate-associated transmembrane protein 1 (CLPTM1) []. The Poliovirus receptor-related 1 gene (PVRL1), which is located on chromosome 11, has also been shown to associate with non-syndromic cleft lip and palates [, ]. CLPTM1 encodes a transmembrane protein and has strong homology to two Caenorhabditis elegans genes, suggesting that CLPTM1 may belong to a new gene family []. This family also contains the Homo sapiens cisplatin resistance related protein CRR9p which is associated with CDDP-induced apoptosis [].
Probab=38.31 E-value=70 Score=30.12 Aligned_cols=69 Identities=23% Similarity=0.293 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHhhccccC-CCceEEeehhHHHHHHH
Q 043313 13 IIGNVISFGLFLSPTPTFWRIIKRKDTEEFHPYAYICACMNCMFWILYGLPVVHP-DSTLVVTINGVGLALEL 84 (240)
Q Consensus 13 ~l~~~~t~~~~~splp~i~~i~k~kst~~~s~~pf~~~~~n~~~Wl~YG~~~l~~-d~~~li~~N~~g~~~~~ 84 (240)
++..+-+++=+++.=-++.-++++||..|+|.-..+.-++...+=++|= +.+ ..+.+.+.+.+|+++++
T Consensus 304 ~vs~lH~~f~fLAFKnDi~fW~~~k~~~GlS~rtv~~~~~~~~iIfLYL---~D~~ts~lil~~~gig~~ie~ 373 (438)
T PF05602_consen 304 VVSLLHSVFDFLAFKNDISFWRKRKSMEGLSVRTVLWNCFSQIIIFLYL---LDNETSWLILVPSGIGLLIEA 373 (438)
T ss_pred HHHHHHHHHHHHhhhhHHHHHhccCCcccccHHHHHHHHHHHHheeeeE---EeCCCcEEeehHhHhHHhHhh
Confidence 3445556667788889999999999999999998888888888888887 443 34888899999999976
No 38
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=34.82 E-value=63 Score=23.90 Aligned_cols=56 Identities=11% Similarity=0.035 Sum_probs=36.7
Q ss_pred chHHHHHHHHhhHHHhhhhccccCeeEEeehHHHHHHHHHHHhheeeeeCCCCCCC
Q 043313 167 PFFLSLANFANGAVWTAYGLIKFDKFIVVSNGLGTVLGAIQLIIYGCYYKSTPKKG 222 (240)
Q Consensus 167 ~~~~~~~~~~~~~~W~~YG~l~~d~~i~~~N~~G~~l~~~~l~l~~~y~~~~~~~~ 222 (240)
.+.|.+...++.++=.++..+.+|.-...--..|.+.++....++=.+.|+..|..
T Consensus 34 K~iPlIs~viGilLG~~~~~~~~~~~l~~~~~aG~laGlAaTGL~e~~t~r~~~~~ 89 (93)
T PF06946_consen 34 KWIPLISVVIGILLGAAAYPLTGDGNLALMAWAGGLAGLAATGLFEQFTNRSKKYG 89 (93)
T ss_pred chhhHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHhhhhhhhHHHHHHhhhhhcC
Confidence 45666666666666677777777664443345688888888888877766544433
No 39
>COG3952 Predicted membrane protein [Function unknown]
Probab=33.98 E-value=2.1e+02 Score=21.72 Aligned_cols=47 Identities=17% Similarity=0.222 Sum_probs=33.4
Q ss_pred CchhHH-HHHHHHHHHHHHhhccccCCCceEEeehhHHHHHHHHHHHHHHh
Q 043313 43 HPYAYI-CACMNCMFWILYGLPVVHPDSTLVVTINGVGLALELIYLSIFCV 92 (240)
Q Consensus 43 s~~pf~-~~~~n~~~Wl~YG~~~l~~d~~~li~~N~~g~~~~~~y~~~~~~ 92 (240)
=|.+|. +.+++..+-+.|. +-++| +.-+..|..|+..++.-+.+..+
T Consensus 56 ~P~~FW~~sllGg~l~L~Yf--i~~~D-pV~Vl~~~~glF~~l~nL~L~~k 103 (113)
T COG3952 56 IPVLFWYFSLLGGLLLLSYF--IRRQD-PVFVLGQACGLFIYLRNLWLIIK 103 (113)
T ss_pred chHHHHHHHHHhhHHHHHHH--HHhcc-hHHHHHHhhhHHHHHHHHHHHHH
Confidence 345555 7788999999999 67888 55556777777777665555543
No 40
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=33.33 E-value=1.1e+02 Score=26.25 Aligned_cols=57 Identities=18% Similarity=0.215 Sum_probs=45.5
Q ss_pred cCCceehhhhhhHHHHHHHHHHhhhHHHHHHHHhcCCCCccchHHHHHHHHh-hHHHh
Q 043313 126 HNTNTRTLFVGIICDIFNIIMYASPLSIWHKVIKTKSVEYMPFFLSLANFAN-GAVWT 182 (240)
Q Consensus 126 ~~~~~~~~~lG~~~~~~~i~~~~Spl~~i~~v~k~kst~~l~~~~~~~~~~~-~~~W~ 182 (240)
.|.+..++.+|+.+++.+..|-+-.=-.+++.+-+-+-++.+..+...+++| |+.|.
T Consensus 126 ~DN~~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~ 183 (290)
T KOG4314|consen 126 ADNEHADEIIGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISF 183 (290)
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhh
Confidence 4667788899999999988886666666788888889898888888888887 56664
No 41
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=29.66 E-value=3.5e+02 Score=26.91 Aligned_cols=77 Identities=17% Similarity=0.128 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHhcCCCCCCchhHH-HHHHHHHHHHHHhhccccCCCceEEeehhHHHHHHHHHHH
Q 043313 10 IVGIIGNVISFGLFLSPTPTFWRIIKRKDTEEFHPYAYI-CACMNCMFWILYGLPVVHPDSTLVVTINGVGLALELIYLS 88 (240)
Q Consensus 10 i~~~l~~~~t~~~~~splp~i~~i~k~kst~~~s~~pf~-~~~~n~~~Wl~YG~~~l~~d~~~li~~N~~g~~~~~~y~~ 88 (240)
..-.+|.+..+.+..=.+-|....-|+|. +.=|..|+ +.+.++.+-+.|+ ...+| +-.+.....|.+...=-+.
T Consensus 139 ~~~~~G~~~q~~f~~Rf~~Qw~~se~~~~--s~~p~~FW~~s~~G~~~~l~Y~--i~r~d-pv~i~g~~~g~~~y~rnl~ 213 (608)
T PRK01021 139 SWHLIGCIGLTIFSLRFFIQWFYLEYNNQ--SALPALFWKASLLGGSLALLYF--IRTGD-PVNILCYGCGLFPSLANLR 213 (608)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCcHHHHHHHHHhHHHHHHHH--HHhCC-ceEEEccccchhHHHHHHH
Confidence 33445555554444444555555444443 33344444 6788899999999 78888 7778889999988765554
Q ss_pred HHH
Q 043313 89 IFC 91 (240)
Q Consensus 89 ~~~ 91 (240)
+.+
T Consensus 214 li~ 216 (608)
T PRK01021 214 IAY 216 (608)
T ss_pred HHH
Confidence 433
No 42
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=27.86 E-value=1e+02 Score=17.01 Aligned_cols=15 Identities=33% Similarity=0.359 Sum_probs=12.4
Q ss_pred hccHHHHHHHHHhcC
Q 043313 24 LSPTPTFWRIIKRKD 38 (240)
Q Consensus 24 ~splp~i~~i~k~ks 38 (240)
...+|.+..++|+|.
T Consensus 10 a~~LP~lISWIK~kr 24 (26)
T PF01372_consen 10 ATGLPTLISWIKNKR 24 (26)
T ss_dssp HTHHHHHHHHHHHHH
T ss_pred HhcChHHHHHHHHHh
Confidence 457999999999874
No 43
>PRK10580 proY putative proline-specific permease; Provisional
Probab=26.69 E-value=3e+02 Score=25.64 Aligned_cols=30 Identities=7% Similarity=0.018 Sum_probs=17.2
Q ss_pred ehhhhhhHHHHHHHHHHhhhHHHHHHHHhc
Q 043313 131 RTLFVGIICDIFNIIMYASPLSIWHKVIKT 160 (240)
Q Consensus 131 ~~~~lG~~~~~~~i~~~~Spl~~i~~v~k~ 160 (240)
.-+.+..+++......|..+.....+-.|+
T Consensus 356 ~~~~l~~~~~~~~~~~y~~~~~~~~~lr~~ 385 (457)
T PRK10580 356 VFLVIASLATFATVWVWIMILLSQIAFRRR 385 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566666666677776655554444
No 44
>PRK11387 S-methylmethionine transporter; Provisional
Probab=23.89 E-value=2.5e+02 Score=26.34 Aligned_cols=21 Identities=10% Similarity=0.094 Sum_probs=11.3
Q ss_pred hhhhhHHHHHHHHHHhhhHHH
Q 043313 133 LFVGIICDIFNIIMYASPLSI 153 (240)
Q Consensus 133 ~~lG~~~~~~~i~~~~Spl~~ 153 (240)
+.+..+++...+..|..+.-.
T Consensus 365 ~~l~~l~~~~~li~y~~~~~~ 385 (471)
T PRK11387 365 VALSAISGFAVVAVWLSICAS 385 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555666666433
No 45
>PF08733 PalH: PalH/RIM21; InterPro: IPR014844 PalH (also known as RIM21) is a transmembrane protein required for proteolytic cleavage of Rim101/PacC transcription factors which are activated by C-terminal proteolytic processing. Rim101/PacC family proteins play a key role in pH-dependent responses and PalH has been implicated as a pH sensor [].
Probab=23.63 E-value=5.7e+02 Score=23.36 Aligned_cols=49 Identities=16% Similarity=0.319 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhccHHHHHHH-HHhcCCCCCCchhHHHHHHHHHHHHHHh
Q 043313 13 IIGNVISFGLFLSPTPTFWRI-IKRKDTEEFHPYAYICACMNCMFWILYG 61 (240)
Q Consensus 13 ~l~~~~t~~~~~splp~i~~i-~k~kst~~~s~~pf~~~~~n~~~Wl~YG 61 (240)
++-.++.++..++-+..+.|+ .|.|+..-.-..-+.+..+...+|..+-
T Consensus 165 v~~lis~~~l~l~qvqiv~rlF~R~~eK~~i~~vG~~L~i~~~il~ai~~ 214 (348)
T PF08733_consen 165 VIDLISNFFLQLAQVQIVIRLFPRQKEKRIIFWVGFILIILDQILWAINQ 214 (348)
T ss_pred eHHHHHHHHHHHHHHHHHHHhhcccCcEEEEeeHHHHHHHHHHHHHHHHH
Confidence 344566677778889999999 7777777778888999999999999888
No 46
>PRK11387 S-methylmethionine transporter; Provisional
Probab=22.23 E-value=5e+02 Score=24.24 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=9.4
Q ss_pred HHHHHHHHHHhccHHHHHHHHHh
Q 043313 14 IGNVISFGLFLSPTPTFWRIIKR 36 (240)
Q Consensus 14 l~~~~t~~~~~splp~i~~i~k~ 36 (240)
+++...+..++...-...+.+|+
T Consensus 370 l~~~~~li~y~~~~~~~i~lr~~ 392 (471)
T PRK11387 370 ISGFAVVAVWLSICASHFMFRRR 392 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444333343433
No 47
>TIGR00341 conserved hypothetical protein TIGR00341. This conserved hypothetical protein is found so far only in three archaeal genomes and in Streptomyces coelicolor. It shares a hydrophobic uncharacterized domain (see model TIGR00271) of about 180 residues with several eubacterial proteins, including the much longer protein sll1151 of Synechocystis PCC6803.
Probab=21.88 E-value=1e+02 Score=28.07 Aligned_cols=53 Identities=9% Similarity=-0.096 Sum_probs=35.0
Q ss_pred CchhHHHHHHHHHHHHHHhhccccCCCceEEeehhHHHHHHHHHHHHHHhhccCch
Q 043313 43 HPYAYICACMNCMFWILYGLPVVHPDSTLVVTINGVGLALELIYLSIFCVYNRQKK 98 (240)
Q Consensus 43 s~~pf~~~~~n~~~Wl~YG~~~l~~d~~~li~~N~~g~~~~~~y~~~~~~y~~~~~ 98 (240)
+..|..+...-+..|-.+. ...+. ..++.+|.+|..++...+..++.+++.+.
T Consensus 242 aLvPPa~~~Gi~la~g~~~--~a~ga-~~L~~~Nl~~I~la~~~vf~~~g~~p~~~ 294 (325)
T TIGR00341 242 SLLPPAVATGILLVISPLP--LAVKS-LILTLINVAGLMAGSLAGVYVYGIRAYRY 294 (325)
T ss_pred HhhchHHHHHHHHHhccHH--HHHHH-HHHHHHHHHHHHHHHHHHHHHhCCCcchh
Confidence 4455555555556665555 33444 77888999999998876666666665553
No 48
>PRK10655 potE putrescine transporter; Provisional
Probab=21.36 E-value=3.7e+02 Score=24.78 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=13.6
Q ss_pred HHHHHHHHHhheeeeeCCCCCCCCC
Q 043313 200 GTVLGAIQLIIYGCYYKSTPKKGSG 224 (240)
Q Consensus 200 G~~l~~~~l~l~~~y~~~~~~~~~~ 224 (240)
|...-..-+..|..++++.++|+++
T Consensus 413 ~~~~~~~g~~~y~~~~~~~~~~~~~ 437 (438)
T PRK10655 413 GSIVTFLGWTLYGLISPRFELKNKH 437 (438)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcccC
Confidence 4444444455665566665566554
No 49
>KOG3145 consensus Cystine transporter Cystinosin [Amino acid transport and metabolism]
Probab=20.60 E-value=50 Score=29.83 Aligned_cols=76 Identities=14% Similarity=0.103 Sum_probs=47.1
Q ss_pred hhHHHHHHHHhcCCCCccchHHHHHHHHhhHHHhhhhc-------cccCe--------eEEee-----hHHHHHHHHHHH
Q 043313 149 SPLSIWHKVIKTKSVEYMPFFLSLANFANGAVWTAYGL-------IKFDK--------FIVVS-----NGLGTVLGAIQL 208 (240)
Q Consensus 149 Spl~~i~~v~k~kst~~l~~~~~~~~~~~~~~W~~YG~-------l~~d~--------~i~~~-----N~~G~~l~~~~l 208 (240)
|--||+....|+||..++++-....+..+-..-.+|-+ +++|. ..+.. ..=|.++..+.+
T Consensus 138 SfYPqii~N~RrKSv~gLnfDFv~LNl~Gfs~y~ifn~~ly~~~~iq~~y~~~~p~g~~pv~~nDv~fslHa~lmt~Iti 217 (372)
T KOG3145|consen 138 SFYPQIILNWRRKSVVGLNFDFVMLNLTGFSAYSIFNFLLYYCPKIQNQYDTSYPLGVPPVTLNDVVFSLHAVLMTVITI 217 (372)
T ss_pred eechHHHhhhhhcceeccccceeeehhhhhHHHHHHHHHHHhcHHhccceeccCCCCCCccchhhhhhhHHHHHHHHHHH
Confidence 44599999999999999987654333333222222211 12222 11122 234677788888
Q ss_pred hheeeeeCCCCCCCCC
Q 043313 209 IIYGCYYKSTPKKGSG 224 (240)
Q Consensus 209 ~l~~~y~~~~~~~~~~ 224 (240)
..++.|.|..+++...
T Consensus 218 ~Qc~~yeR~~q~vs~~ 233 (372)
T KOG3145|consen 218 LQCFFYERGWQRVSKG 233 (372)
T ss_pred HHHHhhhhcccccchh
Confidence 8999998888777764
No 50
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=20.39 E-value=1.2e+02 Score=18.78 Aligned_cols=19 Identities=11% Similarity=0.357 Sum_probs=10.9
Q ss_pred HHHHHHHHHhheeeeeCCC
Q 043313 200 GTVLGAIQLIIYGCYYKST 218 (240)
Q Consensus 200 G~~l~~~~l~l~~~y~~~~ 218 (240)
|.+.-..-.++|++|+|+|
T Consensus 22 ~vI~~vl~~~l~~~~rR~k 40 (40)
T PF08693_consen 22 GVIIIVLGAFLFFWYRRKK 40 (40)
T ss_pred HHHHHHHHHHhheEEeccC
Confidence 4444444556777787654
Done!