Query 043313
Match_columns 240
No_of_seqs 152 out of 1492
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 05:55:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043313.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043313hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 34.0 1.7E+02 0.0059 25.2 8.7 27 135-161 353-379 (445)
2 3qrx_B Melittin; calcium-bindi 8.4 2.1E+02 0.0072 15.0 1.7 15 24-38 10-24 (26)
3 2lat_A Dolichyl-diphosphooligo 7.7 3.8E+02 0.013 15.4 3.5 21 1-21 1-21 (37)
4 2nr1_A NR1 M2, M2; receptor, s 6.5 1.7E+02 0.0057 15.7 0.8 14 176-189 9-22 (27)
5 1rkl_A Dolichyl-diphosphooligo 5.8 3.6E+02 0.012 15.5 2.0 19 1-19 1-19 (36)
6 4djk_A Probable glutamate/gamm 5.3 9.2E+02 0.031 20.9 5.6 22 137-158 372-393 (511)
7 3l1l_A Arginine/agmatine antip 4.4 1.5E+03 0.051 18.9 7.6 11 26-36 368-378 (445)
8 1afo_A Glycophorin A; integral 4.2 6.7E+02 0.023 14.6 2.4 16 134-149 16-31 (40)
9 2xq2_A Sodium/glucose cotransp 4.0 2E+03 0.067 19.7 7.9 117 47-168 457-586 (593)
10 2l2t_A Receptor tyrosine-prote 3.7 2.8E+02 0.0096 16.6 0.5 24 200-223 19-42 (44)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=34.03 E-value=1.7e+02 Score=25.22 Aligned_cols=27 Identities=15% Similarity=0.170 Sum_probs=12.9
Q ss_pred hhhHHHHHHHHHHhhhHHHHHHHHhcC
Q 043313 135 VGIICDIFNIIMYASPLSIWHKVIKTK 161 (240)
Q Consensus 135 lG~~~~~~~i~~~~Spl~~i~~v~k~k 161 (240)
+..+++......|..+.....+..|++
T Consensus 353 l~~~~~~~~~~~y~~~~~~~~~~r~~~ 379 (445)
T 3l1l_A 353 VSSVSVIFTLVPYLYTCAALLLLGHGH 379 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 333444444455555555445444444
No 2
>3qrx_B Melittin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 1bh1_A 2mlt_A
Probab=8.40 E-value=2.1e+02 Score=14.96 Aligned_cols=15 Identities=33% Similarity=0.412 Sum_probs=12.1
Q ss_pred hccHHHHHHHHHhcC
Q 043313 24 LSPTPTFWRIIKRKD 38 (240)
Q Consensus 24 ~splp~i~~i~k~ks 38 (240)
...+|.+..++|+|.
T Consensus 10 a~~LP~liSWiK~kr 24 (26)
T 3qrx_B 10 TTGLPALISWIKRKR 24 (26)
T ss_pred HccchHHHHHHHHHh
Confidence 346899999999875
No 3
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=7.70 E-value=3.8e+02 Score=15.44 Aligned_cols=21 Identities=10% Similarity=0.156 Sum_probs=14.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHH
Q 043313 1 MVSAEAARNIVGIIGNVISFG 21 (240)
Q Consensus 1 ~~~~~~~~~i~~~l~~~~t~~ 21 (240)
|+|.++...+.-++|...-++
T Consensus 1 MIsD~qL~~lan~lG~~~~~L 21 (37)
T 2lat_A 1 MITDVQLAIFANMLGVSLFLL 21 (37)
T ss_dssp CCSCHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHH
Confidence 788777777777777665543
No 4
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=6.53 E-value=1.7e+02 Score=15.75 Aligned_cols=14 Identities=21% Similarity=0.650 Sum_probs=9.6
Q ss_pred HhhHHHhhhhcccc
Q 043313 176 ANGAVWTAYGLIKF 189 (240)
Q Consensus 176 ~~~~~W~~YG~l~~ 189 (240)
+.+.+|+..|.+.+
T Consensus 9 l~aa~wF~WGvlln 22 (27)
T 2nr1_A 9 LSSAMWFSWGVLLN 22 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhHHHhhHhhee
Confidence 44678888887653
No 5
>1rkl_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 4 kDa subunit; membrane protein; NMR {Synthetic} SCOP: f.23.30.1
Probab=5.82 E-value=3.6e+02 Score=15.47 Aligned_cols=19 Identities=26% Similarity=0.349 Sum_probs=9.7
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 043313 1 MVSAEAARNIVGIIGNVIS 19 (240)
Q Consensus 1 ~~~~~~~~~i~~~l~~~~t 19 (240)
|+|.++...+.-++|...-
T Consensus 1 MIsD~qL~~lan~lG~~~~ 19 (36)
T 1rkl_A 1 MISDEQLNSLAITFGIVMM 19 (36)
T ss_dssp CCSSCGGGHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHH
Confidence 5555555555555554433
No 6
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=5.33 E-value=9.2e+02 Score=20.85 Aligned_cols=22 Identities=5% Similarity=0.076 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHhhhHHHHHHHH
Q 043313 137 IICDIFNIIMYASPLSIWHKVI 158 (240)
Q Consensus 137 ~~~~~~~i~~~~Spl~~i~~v~ 158 (240)
.+++......|..+.....+..
T Consensus 372 ~~~~~~~~~~y~~~~~~~~~~r 393 (511)
T 4djk_A 372 ALTVVIYLCAYFMLFIGYIVLV 393 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555544333333
No 7
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=4.41 E-value=1.5e+03 Score=18.87 Aligned_cols=11 Identities=0% Similarity=-0.073 Sum_probs=4.3
Q ss_pred cHHHHHHHHHh
Q 043313 26 PTPTFWRIIKR 36 (240)
Q Consensus 26 plp~i~~i~k~ 36 (240)
+.-...+.+|+
T Consensus 368 ~~~~~~~~r~~ 378 (445)
T 3l1l_A 368 TCAALLLLGHG 378 (445)
T ss_dssp HHHHHHHHHSS
T ss_pred HHHHHHHHhhc
Confidence 33333444433
No 8
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=4.19 E-value=6.7e+02 Score=14.59 Aligned_cols=16 Identities=19% Similarity=0.542 Sum_probs=7.2
Q ss_pred hhhhHHHHHHHHHHhh
Q 043313 134 FVGIICDIFNIIMYAS 149 (240)
Q Consensus 134 ~lG~~~~~~~i~~~~S 149 (240)
++|..|.+....++.|
T Consensus 16 I~~vmaGiIG~IllI~ 31 (40)
T 1afo_A 16 IFGVMAGVIGTILLIS 31 (40)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 9
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=4.03 E-value=2e+03 Score=19.66 Aligned_cols=117 Identities=9% Similarity=0.029 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhccccCCCceEEeehhHHHHHHHHHHHHHHhhccCchh-------------hHHHHHHHHHHHHH
Q 043313 47 YICACMNCMFWILYGLPVVHPDSTLVVTINGVGLALELIYLSIFCVYNRQKKG-------------RKIVAIGLLGEVAF 113 (240)
Q Consensus 47 f~~~~~n~~~Wl~YG~~~l~~d~~~li~~N~~g~~~~~~y~~~~~~y~~~~~~-------------~~~~~~~~~~~~~~ 113 (240)
+..+..+...|+..- ....+ .+....+..+...+..-..+.-..++++.+ +.+..+.....+..
T Consensus 457 ~~g~i~G~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~iv~v~vSl~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (593)
T 2xq2_A 457 IIGVVASIPFALFLK--FMPLS-MPFMDQMLYTLLFTMVVIAFTSLSTSINDDDPKGISVTSSMFVTDRSFNIAAYGIMI 533 (593)
T ss_dssp HHHHHHHHHHHHHHH--HSSCC-CCHHHHHHHHHHHHHHHHHHHHHHHCSSSSCTTCCCCCSSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--HHcCC-ccHHHHHHHHHHHHHHHHHhheeecCCCchhhccccccccccccCccchhhHHHHHH
Q ss_pred HHHHHhhhhhhccCCceehhhhhhHHHHHHHHHHhhhHHHHHHHHhcCCCCccch
Q 043313 114 LGVIAVITFVVFHNTNTRTLFVGIICDIFNIIMYASPLSIWHKVIKTKSVEYMPF 168 (240)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~lG~~~~~~~i~~~~Spl~~i~~v~k~kst~~l~~ 168 (240)
........+....+.....-+++..+.+....+..| -.++|.+|+.+.+.-++
T Consensus 534 ~~~~~~~~f~~~~~~~i~l~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 586 (593)
T 2xq2_A 534 VLAVLYTLFWVNADAEITLIIFGVMAGVIGTILLIS--YGIKKLIKASYKSGGSP 586 (593)
T ss_dssp HHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHH--HHHC-------------
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhcCCCCCCCCC
No 10
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=3.67 E-value=2.8e+02 Score=16.61 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHHHHHHhheeeeeCCCCCCCC
Q 043313 200 GTVLGAIQLIIYGCYYKSTPKKGS 223 (240)
Q Consensus 200 G~~l~~~~l~l~~~y~~~~~~~~~ 223 (240)
|++.-.+-....+.|-+++++++.
T Consensus 19 Gv~~v~ii~~~~~~~~RRRr~~~k 42 (44)
T 2l2t_A 19 GLFILVIVGLTFAVYVRRKSIKKK 42 (44)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhc
Done!