Query 043313
Match_columns 240
No_of_seqs 152 out of 1492
Neff 7.5
Searched_HMMs 13730
Date Mon Mar 25 05:55:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043313.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/043313hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtm1 f.23.35.1 (M:1-36) Pho 4.1 2.2E+02 0.016 14.8 1.7 12 75-86 3-14 (36)
2 d3cx5c1 f.32.1.1 (C:262-385) M 3.9 5.5E+02 0.04 16.8 6.3 32 117-148 72-103 (124)
3 d1kf6c_ f.21.2.2 (C:) Fumarate 3.3 3.8E+02 0.028 18.1 2.9 12 94-105 17-28 (130)
4 d1rzhh2 f.23.10.1 (H:11-35) Ph 3.2 3.3E+02 0.024 12.9 1.7 9 53-61 4-12 (26)
5 d1jfia_ a.22.1.3 (A:) Negative 3.1 4.7E+02 0.035 14.7 4.1 20 150-169 4-24 (66)
6 d2dlqa4 g.37.1.1 (A:8-34) GLI- 3.0 1.9E+02 0.014 13.9 0.6 12 30-41 15-26 (27)
7 d1xioa_ f.13.1.1 (A:) Sensory 2.8 8.5E+02 0.062 17.1 10.5 35 152-187 148-182 (226)
8 d2axtt1 f.23.34.1 (T:1-30) Pho 2.8 3.8E+02 0.028 12.9 2.0 14 78-91 10-23 (30)
9 d2croa_ a.35.1.2 (A:) cro 434 2.6 5.3E+02 0.038 14.1 3.2 33 152-185 31-64 (65)
10 d1vf5c3 f.23.23.1 (C:250-286) 2.2 5.6E+02 0.041 13.3 3.3 15 152-166 19-33 (37)
No 1
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.12 E-value=2.2e+02 Score=14.84 Aligned_cols=12 Identities=25% Similarity=0.636 Sum_probs=5.9
Q ss_pred ehhHHHHHHHHH
Q 043313 75 INGVGLALELIY 86 (240)
Q Consensus 75 ~N~~g~~~~~~y 86 (240)
+|..|.+....+
T Consensus 3 vN~Lg~iAt~LF 14 (36)
T d2axtm1 3 VNQLGLIATALF 14 (36)
T ss_dssp CCTTHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 355555554433
No 2
>d3cx5c1 f.32.1.1 (C:262-385) Mitochondrial cytochrome b subunit, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.89 E-value=5.5e+02 Score=16.76 Aligned_cols=32 Identities=6% Similarity=0.175 Sum_probs=21.9
Q ss_pred HHhhhhhhccCCceehhhhhhHHHHHHHHHHh
Q 043313 117 IAVITFVVFHNTNTRTLFVGIICDIFNIIMYA 148 (240)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~lG~~~~~~~i~~~~ 148 (240)
....++.|..+.|.--..+|.++++.-...+.
T Consensus 72 fi~LtwlG~~p~e~p~~~~gqi~s~~YF~~Fl 103 (124)
T d3cx5c1 72 FVLLGQIGACHVEVPYVLMGQIATFIYFAYFL 103 (124)
T ss_dssp HHHHHHHHTSCSCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCchHHHHHHHHHHHHHHHHH
Confidence 33456666666677777788888877766664
No 3
>d1kf6c_ f.21.2.2 (C:) Fumarate reductase subunit FrdC {Escherichia coli [TaxId: 562]}
Probab=3.34 E-value=3.8e+02 Score=18.14 Aligned_cols=12 Identities=8% Similarity=-0.200 Sum_probs=4.9
Q ss_pred ccCchhhHHHHH
Q 043313 94 NRQKKGRKIVAI 105 (240)
Q Consensus 94 ~~~~~~~~~~~~ 105 (240)
.+.+.+|..+++
T Consensus 17 ~k~~FYr~YMlR 28 (130)
T d1kf6c_ 17 KKLPFYRFYMLR 28 (130)
T ss_dssp GSSHHHHHHHHH
T ss_pred hcCcHHHHHHHH
Confidence 333334444444
No 4
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=3.17 E-value=3.3e+02 Score=12.92 Aligned_cols=9 Identities=0% Similarity=0.135 Sum_probs=4.9
Q ss_pred HHHHHHHHh
Q 043313 53 NCMFWILYG 61 (240)
Q Consensus 53 n~~~Wl~YG 61 (240)
+..+|+.|+
T Consensus 4 slaiw~fw~ 12 (26)
T d1rzhh2 4 SLAIYSFWI 12 (26)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 345566655
No 5
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.13 E-value=4.7e+02 Score=14.72 Aligned_cols=20 Identities=15% Similarity=0.243 Sum_probs=12.9
Q ss_pred hHHHHHHHHhc-CCCCccchH
Q 043313 150 PLSIWHKVIKT-KSVEYMPFF 169 (240)
Q Consensus 150 pl~~i~~v~k~-kst~~l~~~ 169 (240)
|+..+++++|. .+.+.++-.
T Consensus 4 P~srVkkimk~~~~~~~is~~ 24 (66)
T d1jfia_ 4 PPARIKKIMQTDEEIGKVAAA 24 (66)
T ss_dssp CHHHHHHHHTTSTTCCCBCTT
T ss_pred ChHHHHHHHhcCCccccccHH
Confidence 78888999984 444444433
No 6
>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.03 E-value=1.9e+02 Score=13.90 Aligned_cols=12 Identities=33% Similarity=0.623 Sum_probs=8.5
Q ss_pred HHHHHHhcCCCC
Q 043313 30 FWRIIKRKDTEE 41 (240)
Q Consensus 30 i~~i~k~kst~~ 41 (240)
-.+++.+|++|+
T Consensus 15 ylkvhnr~htge 26 (27)
T d2dlqa4 15 YLKVHNRKHTGE 26 (27)
T ss_dssp HHHHHHHHHSSC
T ss_pred hhhhccccccCC
Confidence 356778888775
No 7
>d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=2.81 E-value=8.5e+02 Score=17.07 Aligned_cols=35 Identities=14% Similarity=0.199 Sum_probs=19.3
Q ss_pred HHHHHHHhcCCCCccchHHHHHHHHhhHHHhhhhcc
Q 043313 152 SIWHKVIKTKSVEYMPFFLSLANFANGAVWTAYGLI 187 (240)
Q Consensus 152 ~~i~~v~k~kst~~l~~~~~~~~~~~~~~W~~YG~l 187 (240)
...++..++++.+. ....-....+...+|.+|++.
T Consensus 148 ~~~~~~~~~~~~~~-~~~~~~l~~~~~v~W~~YPi~ 182 (226)
T d1xioa_ 148 NPLRAKTRTQSSEL-ANLYDKLVTYFTVLWIGYPIV 182 (226)
T ss_dssp THHHHHHTTSCHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 34455555554322 223333445567899999974
No 8
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.80 E-value=3.8e+02 Score=12.94 Aligned_cols=14 Identities=21% Similarity=0.584 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q 043313 78 VGLALELIYLSIFC 91 (240)
Q Consensus 78 ~g~~~~~~y~~~~~ 91 (240)
+.++++.++.++|+
T Consensus 10 fac~i~lfffaiff 23 (30)
T d2axtt1 10 FACIIALFFFAIFF 23 (30)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 33444444444444
No 9
>d2croa_ a.35.1.2 (A:) cro 434 {Bacteriophage 434 [TaxId: 10712]}
Probab=2.58 E-value=5.3e+02 Score=14.09 Aligned_cols=33 Identities=21% Similarity=0.350 Sum_probs=17.0
Q ss_pred HHHHHHHhcCCCCccchHHHHHHHHh-hHHHhhhh
Q 043313 152 SIWHKVIKTKSVEYMPFFLSLANFAN-GAVWTAYG 185 (240)
Q Consensus 152 ~~i~~v~k~kst~~l~~~~~~~~~~~-~~~W~~YG 185 (240)
.++.+.-+.++... ....-++-.++ +.-|+++|
T Consensus 31 ~ti~~~E~g~~~~~-~~l~~ia~~l~v~~~~Ll~G 64 (65)
T d2croa_ 31 QSIQLIEAGVTKRP-RFLFEIAMALNCDPVWLQYG 64 (65)
T ss_dssp HHHHHHHTTCCSSC-TTHHHHHHHTTSCHHHHHHC
T ss_pred hHHHHHHCCCCCCH-HHHHHHHHHhCCCHHHHhhC
Confidence 44455555554433 33344444444 56677776
No 10
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=2.15 E-value=5.6e+02 Score=13.28 Aligned_cols=15 Identities=27% Similarity=0.317 Sum_probs=9.6
Q ss_pred HHHHHHHhcCCCCcc
Q 043313 152 SIWHKVIKTKSVEYM 166 (240)
Q Consensus 152 ~~i~~v~k~kst~~l 166 (240)
.|+.-|+|+|-.|.+
T Consensus 19 aQi~lVlKKKQ~EkV 33 (37)
T d1vf5c3 19 AQLMLILKKKQVEKV 33 (37)
T ss_dssp HHHHHHHHTGGGCTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 566667777766554
Done!