BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043314
(273 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FY79|LAC14_ARATH Laccase-14 OS=Arabidopsis thaliana GN=LAC14 PE=2 SV=1
Length = 569
Score = 38.1 bits (87), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 53/244 (21%), Positives = 97/244 (39%), Gaps = 44/244 (18%)
Query: 39 HLQIVVVKTRSGSRIAPANLSQPIKILMVE-EFESNIVKERTGKRLLLT----GDVNVTI 93
H +K+++ +R+ N KIL V EF +K G +L++ + N+T+
Sbjct: 36 HHHTFKIKSKAYTRLCNTN-----KILTVNGEFPGPTLKAYRGDKLIVNVINNANYNITL 90
Query: 94 KNGVARVEDIEFTDNSNWI--------RSRKFRIGAKVAQ----WTYHGVRIREAITEAF 141
AR ++D ++ S +RI KV + W H R + AF
Sbjct: 91 HWHGARQIRNPWSDGPEYVTQCPIRPGESYVYRIDLKVEEGTIWWHAHSQWARATVHGAF 150
Query: 142 VVKDHRGELYKKHHP----PMLEDEVWRLGKI----GRGGNFCGKLAASGIKTVQ----- 188
+V RG Y P P++ E W+ I G+ G+ A S T+
Sbjct: 151 IVYPKRGSSYPFPKPHREIPLILGEWWKKENIMHIPGKANKTGGEPAISDSYTINGQPGY 210
Query: 189 -------DFLKVSIVEPQK-LRRILGTGMSEKMWDTM-KHARTCSMGSKLYIFRGQNCII 239
+ K+++V ++ L RI+ M E+++ + H T Y+ ++ +
Sbjct: 211 LYPCSKPETFKITVVRGRRYLLRIINAVMDEELFFAIANHTLTVVAKDGFYLKHFKSDYL 270
Query: 240 ILNP 243
++ P
Sbjct: 271 MITP 274
>sp|Q9W1V6|PRPD3_DROME Diphenoloxidase subunit A3 OS=Drosophila melanogaster GN=Dox-A3
PE=1 SV=1
Length = 683
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 10/85 (11%)
Query: 71 ESNIVKERTGKRLLLTGDVNVTIKNGVARVEDIEFTDNSNWIRSRKFRIGAKVAQWTYHG 130
E + V ER+ RL + V T D++ + R +G + W +H
Sbjct: 165 EESFVVERSAARLPVVSSVKYT-------ASDLDVEHRLWYFRED---LGVNLHHWHWHL 214
Query: 131 VRIREAITEAFVVKDHRGELYKKHH 155
V EA + V KD RGEL+ H
Sbjct: 215 VYPIEAPDRSIVDKDRRGELFYYMH 239
>sp|Q58235|FKBP2_METJA Putative FKBP-type peptidyl-prolyl cis-trans isomerase MJ0825
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0825
PE=1 SV=2
Length = 231
Score = 32.7 bits (73), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 65/152 (42%), Gaps = 21/152 (13%)
Query: 2 PSLYFQALEPSSLKL----NFSKKLSLPIFTGSKITNIESDHLQIVVVKTRSG------- 50
P F +PS +KL F+K+ PI K I D + +V SG
Sbjct: 76 PEKAFGKRDPSKIKLIPLSEFTKRGIKPI----KGLTITIDGIPGKIVSINSGRVLVDFN 131
Query: 51 SRIAPANLSQPIKILMVEEFESNIVKERTGKRLLLTGDVNVTIKNGVARVEDIEFTDNSN 110
+A + IKI V + + NIVKE + DV VTI+NG ++E EF
Sbjct: 132 HELAGKEVKYRIKIEEVVDDKKNIVKEIVKMYVPRLSDVKVTIRNGTVKIELPEFAPFIP 191
Query: 111 WIRSRKFRIGAKVAQWTYHGVRIREAITEAFV 142
I++ K I ++ + R+ +A +FV
Sbjct: 192 NIQTAKMAIANEILK------RLEDAEKVSFV 217
>sp|Q5ZJL4|CLP1_CHICK Polyribonucleotide 5'-hydroxyl-kinase Clp1 OS=Gallus gallus GN=CLP1
PE=2 SV=1
Length = 425
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 89 VNVTIKNGVARVEDIEFTDNSNWIRSRKFRIGAKVAQWTYHGVRIR-EAITE-AFVVKDH 146
V + + G+A V E T N + F GAKVA +T+HG ++ TE A+V KD
Sbjct: 33 VQMELLTGMAEVFGTELTRNKKFT----FDAGAKVAVFTWHGCTVQLSGRTEVAYVSKDT 88
Query: 147 RGELYKKHH 155
LY H
Sbjct: 89 PMLLYLNTH 97
>sp|Q4R7R3|CLP1_MACFA Polyribonucleotide 5'-hydroxyl-kinase Clp1 OS=Macaca fascicularis
GN=CLP1 PE=2 SV=1
Length = 425
Score = 31.6 bits (70), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 89 VNVTIKNGVARVEDIEFTDNSNWIRSRKFRIGAKVAQWTYHGVRIR-EAITE-AFVVKDH 146
V + + G+A + E T N + F GAKVA +T+HG ++ TE A+V KD
Sbjct: 33 VQLELLTGMAEIFGTELTRNKKFT----FDAGAKVAVFTWHGCSVQLSGRTEVAYVSKDT 88
Query: 147 RGELYKKHH 155
LY H
Sbjct: 89 PMLLYLNTH 97
>sp|Q92989|CLP1_HUMAN Polyribonucleotide 5'-hydroxyl-kinase Clp1 OS=Homo sapiens GN=CLP1
PE=1 SV=1
Length = 425
Score = 31.6 bits (70), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 89 VNVTIKNGVARVEDIEFTDNSNWIRSRKFRIGAKVAQWTYHGVRIR-EAITE-AFVVKDH 146
V + + G+A + E T N + F GAKVA +T+HG ++ TE A+V KD
Sbjct: 33 VQLELLTGMAEIFGTELTRNKKFT----FDAGAKVAVFTWHGCSVQLSGRTEVAYVSKDT 88
Query: 147 RGELYKKHH 155
LY H
Sbjct: 89 PMLLYLNTH 97
>sp|Q46L15|SYL_PROMT Leucine--tRNA ligase OS=Prochlorococcus marinus (strain NATL2A)
GN=leuS PE=3 SV=1
Length = 862
Score = 30.8 bits (68), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 61 PIKILM---VEEFESNIVKERTGKRLLLTGDVNVTIKNGVARVEDIEFTDNSNWIRSRKF 117
PI+ ++ ++E ES + E K +++ D I++ +A+ + +EF NSNW +
Sbjct: 367 PIQYVIKPNIDEDESYLNAEFVDKGIMINSDKFNGIESDIAKTQILEFGSNSNWAKP--- 423
Query: 118 RIGAKVAQW 126
+I K+ W
Sbjct: 424 KITYKLRDW 432
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,960,191
Number of Sequences: 539616
Number of extensions: 4078670
Number of successful extensions: 9363
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 9359
Number of HSP's gapped (non-prelim): 11
length of query: 273
length of database: 191,569,459
effective HSP length: 116
effective length of query: 157
effective length of database: 128,974,003
effective search space: 20248918471
effective search space used: 20248918471
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)