Query 043315
Match_columns 587
No_of_seqs 261 out of 1513
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 03:46:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043315.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043315hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03159 cation/H(+) antiporte 100.0 9E-121 2E-125 1051.1 60.6 560 1-587 123-793 (832)
2 KOG1650 Predicted K+/H+-antipo 100.0 3.8E-99 8E-104 859.8 37.1 559 1-587 103-763 (769)
3 PRK10669 putative cation:proto 100.0 6.9E-36 1.5E-40 335.1 32.3 280 1-291 76-390 (558)
4 PRK03562 glutathione-regulated 100.0 4.2E-35 9.1E-40 330.9 33.0 279 1-291 75-381 (621)
5 PRK03659 glutathione-regulated 100.0 1.5E-34 3.2E-39 325.8 33.9 279 1-291 75-378 (601)
6 COG0475 KefB Kef-type K+ trans 100.0 7.3E-34 1.6E-38 304.9 31.6 283 1-294 77-389 (397)
7 PRK05326 potassium/proton anti 99.9 1.1E-25 2.5E-30 252.6 24.6 281 1-291 78-389 (562)
8 PF00999 Na_H_Exchanger: Sodiu 99.9 5.3E-29 1.2E-33 266.6 -2.3 281 1-289 67-378 (380)
9 TIGR00932 2a37 transporter, mo 99.9 1.5E-23 3.2E-28 214.9 21.8 184 1-193 62-273 (273)
10 COG4651 RosB Kef-type K+ trans 99.9 2.5E-23 5.4E-28 206.0 19.7 275 3-290 78-388 (408)
11 PRK14853 nhaA pH-dependent sod 99.6 1.7E-13 3.7E-18 145.9 29.6 260 14-289 101-395 (423)
12 TIGR00831 a_cpa1 Na+/H+ antipo 99.6 8.1E-13 1.8E-17 147.3 26.5 246 1-254 67-363 (525)
13 TIGR00844 c_cpa1 na(+)/h(+) an 99.3 4.1E-10 9E-15 127.8 26.7 254 1-261 90-386 (810)
14 TIGR00840 b_cpa1 sodium/hydrog 99.3 8.6E-10 1.9E-14 123.5 26.4 284 1-289 84-416 (559)
15 TIGR00773 NhaA Na+/H+ antiport 99.3 4.1E-10 9E-15 118.2 22.2 181 72-258 141-344 (373)
16 COG0025 NhaP NhaP-type Na+/H+ 99.2 8.8E-09 1.9E-13 112.2 27.7 283 1-290 78-407 (429)
17 cd01988 Na_H_Antiporter_C The 99.0 4.2E-09 9E-14 94.8 12.4 128 318-475 1-131 (132)
18 COG3263 NhaP-type Na+/H+ and K 98.6 2E-06 4.4E-11 90.6 16.2 273 2-287 80-383 (574)
19 PRK09560 nhaA pH-dependent sod 98.4 5.1E-05 1.1E-09 80.3 20.8 229 13-257 97-352 (389)
20 PRK14856 nhaA pH-dependent sod 98.2 0.00019 4E-09 77.2 22.4 228 13-258 106-398 (438)
21 PRK09561 nhaA pH-dependent sod 98.2 0.00013 2.9E-09 77.1 20.4 182 72-258 148-351 (388)
22 PRK12460 2-keto-3-deoxyglucona 98.2 9.1E-05 2E-09 76.3 18.3 241 2-293 63-308 (312)
23 PRK14854 nhaA pH-dependent sod 98.1 0.00033 7.2E-09 73.9 21.4 183 72-258 144-348 (383)
24 cd01987 USP_OKCHK USP domain i 98.0 5E-05 1.1E-09 67.8 10.3 119 318-475 1-123 (124)
25 cd01989 STK_N The N-terminal d 97.9 9.8E-05 2.1E-09 67.9 11.0 135 318-475 1-143 (146)
26 PRK14855 nhaA pH-dependent sod 97.9 0.0022 4.7E-08 68.9 22.5 225 13-258 101-383 (423)
27 KOG1965 Sodium/hydrogen exchan 97.8 0.00017 3.7E-09 79.3 13.0 287 2-290 118-455 (575)
28 PF06965 Na_H_antiport_1: Na+/ 97.7 3.6E-05 7.8E-10 81.3 5.3 183 72-259 144-352 (378)
29 PF00582 Usp: Universal stress 97.7 4E-05 8.7E-10 68.2 4.9 131 318-475 4-139 (140)
30 cd00293 USP_Like Usp: Universa 97.7 0.00029 6.3E-09 62.0 10.4 126 318-474 1-129 (130)
31 PRK15456 universal stress prot 97.7 0.00031 6.8E-09 64.4 10.0 59 412-475 80-141 (142)
32 PRK15005 universal stress prot 97.6 0.00058 1.3E-08 62.5 11.3 59 412-475 82-143 (144)
33 PF03812 KdgT: 2-keto-3-deoxyg 97.6 0.0021 4.4E-08 66.2 15.9 239 1-291 62-312 (314)
34 PRK15118 universal stress glob 97.5 0.00053 1.1E-08 62.9 8.5 49 426-475 89-137 (144)
35 PRK11175 universal stress prot 97.4 0.00049 1.1E-08 71.4 8.4 65 411-478 80-147 (305)
36 TIGR00793 kdgT 2-keto-3-deoxyg 97.3 0.0042 9E-08 63.6 13.4 239 2-291 63-312 (314)
37 PRK09982 universal stress prot 97.3 0.0012 2.6E-08 60.8 8.9 48 426-475 89-137 (142)
38 PF05684 DUF819: Protein of un 97.2 0.16 3.5E-06 54.7 25.2 117 148-271 243-359 (378)
39 PRK11175 universal stress prot 97.2 0.0018 3.8E-08 67.2 9.7 54 426-480 247-303 (305)
40 PRK10116 universal stress prot 97.1 0.0023 4.9E-08 58.4 8.9 133 318-476 5-138 (142)
41 TIGR00783 ccs citrate carrier 97.0 0.018 3.8E-07 60.7 14.7 256 1-263 42-327 (347)
42 COG3004 NhaA Na+/H+ antiporter 97.0 0.15 3.3E-06 52.7 20.6 181 70-259 149-355 (390)
43 KOG4505 Na+/H+ antiporter [Ino 96.8 0.028 6.1E-07 58.1 14.3 209 46-257 131-382 (467)
44 TIGR00932 2a37 transporter, mo 96.8 0.062 1.3E-06 55.0 16.8 129 133-267 4-134 (273)
45 PRK05274 2-keto-3-deoxyglucona 96.4 0.041 8.9E-07 57.9 12.9 137 150-294 178-317 (326)
46 PRK03562 glutathione-regulated 96.4 0.12 2.6E-06 59.4 17.3 126 132-263 16-142 (621)
47 PF03390 2HCT: 2-hydroxycarbox 96.2 0.088 1.9E-06 56.7 14.2 256 1-263 111-394 (414)
48 PRK03659 glutathione-regulated 96.1 0.22 4.7E-06 57.1 17.5 125 132-263 16-142 (601)
49 PRK05326 potassium/proton anti 96.1 0.11 2.3E-06 59.2 14.7 130 132-266 17-150 (562)
50 COG3493 CitS Na+/citrate sympo 96.0 0.39 8.5E-06 50.7 17.2 255 1-264 128-414 (438)
51 COG0475 KefB Kef-type K+ trans 96.0 0.28 6.1E-06 53.3 16.9 135 132-274 17-157 (397)
52 PRK10669 putative cation:proto 96.0 0.25 5.3E-06 56.1 17.1 129 132-266 17-146 (558)
53 COG2855 Predicted membrane pro 95.7 0.093 2E-06 54.8 11.0 117 138-257 30-146 (334)
54 PF03601 Cons_hypoth698: Conse 95.6 0.35 7.5E-06 50.6 15.0 149 142-295 23-176 (305)
55 TIGR00698 conserved hypothetic 95.0 0.6 1.3E-05 49.4 14.7 152 132-288 13-175 (335)
56 COG0786 GltS Na+/glutamate sym 94.9 2.6 5.6E-05 45.1 18.8 216 1-237 83-341 (404)
57 COG0589 UspA Universal stress 94.5 0.49 1.1E-05 42.8 11.3 75 398-475 72-150 (154)
58 TIGR00831 a_cpa1 Na+/H+ antipo 94.5 0.44 9.5E-06 53.7 13.0 114 132-250 9-124 (525)
59 PLN03159 cation/H(+) antiporte 94.3 1.3 2.7E-05 52.9 16.7 66 132-198 54-129 (832)
60 PF03616 Glt_symporter: Sodium 94.2 4 8.7E-05 43.9 19.0 91 145-241 247-343 (368)
61 TIGR00844 c_cpa1 na(+)/h(+) an 93.7 1.5 3.3E-05 51.2 15.3 115 132-248 25-146 (810)
62 PF03977 OAD_beta: Na+-transpo 91.7 2.6 5.7E-05 44.1 12.2 111 176-294 67-179 (360)
63 TIGR03136 malonate_biotin Na+- 91.0 5.4 0.00012 42.3 13.9 113 174-294 101-216 (399)
64 PRK12652 putative monovalent c 90.9 1.9 4.1E-05 46.1 10.9 108 318-452 7-125 (357)
65 TIGR03082 Gneg_AbrB_dup membra 90.6 14 0.0003 34.7 15.3 116 132-255 6-125 (156)
66 PF03956 DUF340: Membrane prot 89.8 2.9 6.2E-05 40.8 10.2 102 149-254 2-106 (191)
67 PF03616 Glt_symporter: Sodium 89.8 1.8 3.9E-05 46.5 9.7 113 177-291 66-185 (368)
68 TIGR00210 gltS sodium--glutama 88.8 29 0.00064 37.7 18.1 92 144-238 244-338 (398)
69 COG0025 NhaP NhaP-type Na+/H+ 85.8 19 0.00041 39.6 14.8 118 132-252 17-138 (429)
70 TIGR00841 bass bile acid trans 85.8 47 0.001 34.3 18.0 104 148-255 143-247 (286)
71 PF00999 Na_H_Exchanger: Sodiu 85.7 0.29 6.2E-06 52.4 0.5 112 132-247 7-124 (380)
72 PF05145 AmoA: Putative ammoni 84.7 56 0.0012 34.4 23.9 148 132-290 163-315 (318)
73 KOG1966 Sodium/hydrogen exchan 83.4 15 0.00033 41.5 12.4 244 4-251 120-405 (670)
74 COG4651 RosB Kef-type K+ trans 83.2 6.2 0.00013 40.9 8.7 125 132-265 17-145 (408)
75 PRK10490 sensor protein KdpD; 82.1 8.1 0.00018 46.6 10.8 116 315-469 249-365 (895)
76 PF03547 Mem_trans: Membrane t 80.1 14 0.0003 39.5 10.9 134 149-290 10-146 (385)
77 TIGR01109 Na_pump_decarbB sodi 78.7 9.1 0.0002 40.1 8.2 113 174-294 59-179 (354)
78 PRK15475 oxaloacetate decarbox 77.9 6 0.00013 42.0 6.7 112 175-294 131-250 (433)
79 COG0786 GltS Na+/glutamate sym 77.7 5.8 0.00012 42.5 6.7 114 176-290 67-185 (404)
80 PRK03818 putative transporter; 77.5 19 0.00041 41.0 11.3 84 149-234 34-121 (552)
81 TIGR03136 malonate_biotin Na+- 77.3 59 0.0013 34.8 13.8 94 128-227 234-329 (399)
82 PRK15476 oxaloacetate decarbox 77.0 6.5 0.00014 41.7 6.7 112 175-294 131-250 (433)
83 PRK15477 oxaloacetate decarbox 77.0 6.5 0.00014 41.7 6.7 112 175-294 131-250 (433)
84 TIGR00210 gltS sodium--glutama 76.1 16 0.00035 39.7 9.7 113 177-290 66-184 (398)
85 TIGR00832 acr3 arsenical-resis 75.7 1.1E+02 0.0024 32.3 16.3 34 212-245 254-287 (328)
86 TIGR01625 YidE_YbjL_dupl AspT/ 74.8 10 0.00022 35.6 6.8 89 145-234 21-116 (154)
87 TIGR00946 2a69 he Auxin Efflux 70.5 1.2E+02 0.0025 31.7 14.6 137 146-288 182-319 (321)
88 PF03956 DUF340: Membrane prot 67.8 49 0.0011 32.2 10.1 84 3-96 48-132 (191)
89 PF05684 DUF819: Protein of un 66.9 88 0.0019 33.8 12.8 100 172-276 52-155 (378)
90 cd01989 STK_N The N-terminal d 66.9 19 0.00041 32.4 6.8 79 495-587 63-144 (146)
91 PRK04972 putative transporter; 66.2 71 0.0015 36.4 12.5 82 145-235 37-121 (558)
92 COG1346 LrgB Putative effector 66.1 1.1E+02 0.0024 30.5 12.2 111 165-288 61-171 (230)
93 COG3180 AbrB Putative ammonia 65.7 1.9E+02 0.0042 30.9 24.6 150 132-292 196-350 (352)
94 COG3263 NhaP-type Na+/H+ and K 62.9 72 0.0016 35.1 10.8 110 134-245 20-131 (574)
95 COG0679 Predicted permeases [G 62.4 1.5E+02 0.0032 31.0 13.3 106 146-254 10-117 (311)
96 COG0385 Predicted Na+-dependen 62.4 2.1E+02 0.0046 30.2 16.4 85 149-241 171-260 (319)
97 PF03601 Cons_hypoth698: Conse 62.3 85 0.0018 32.9 11.3 34 166-200 264-297 (305)
98 TIGR00930 2a30 K-Cl cotranspor 62.2 3.7E+02 0.008 32.9 37.7 102 316-454 575-681 (953)
99 COG3180 AbrB Putative ammonia 60.3 2.3E+02 0.005 30.3 14.0 146 132-290 17-169 (352)
100 TIGR03802 Asp_Ala_antiprt aspa 59.6 66 0.0014 36.7 10.7 82 145-235 35-119 (562)
101 TIGR00840 b_cpa1 sodium/hydrog 58.3 86 0.0019 35.8 11.3 74 177-252 69-151 (559)
102 COG1883 OadB Na+-transporting 58.1 5.2 0.00011 41.0 1.3 112 176-295 82-195 (375)
103 PRK04972 putative transporter; 57.8 89 0.0019 35.6 11.4 96 144-242 409-510 (558)
104 TIGR00698 conserved hypothetic 57.7 2.6E+02 0.0057 29.7 18.0 34 166-200 272-305 (335)
105 PF05145 AmoA: Putative ammoni 55.8 1.4E+02 0.0031 31.3 11.8 133 148-290 2-136 (318)
106 PF06826 Asp-Al_Ex: Predicted 54.1 1.8E+02 0.0038 27.8 11.0 88 143-234 21-115 (169)
107 TIGR01109 Na_pump_decarbB sodi 52.8 3.1E+02 0.0067 29.1 14.3 68 128-199 196-265 (354)
108 TIGR03802 Asp_Ala_antiprt aspa 51.3 1.5E+02 0.0032 33.9 11.8 88 146-235 416-510 (562)
109 TIGR00946 2a69 he Auxin Efflux 48.7 1.2E+02 0.0026 31.6 10.0 109 147-257 12-124 (321)
110 COG2205 KdpD Osmosensitive K+ 47.2 1.2E+02 0.0025 36.1 9.9 117 314-469 246-365 (890)
111 PRK04288 antiholin-like protei 46.3 3.2E+02 0.007 27.5 13.1 111 165-288 64-174 (232)
112 COG3329 Predicted permease [Ge 45.9 3.8E+02 0.0083 28.2 14.9 128 137-270 6-138 (372)
113 PF13593 DUF4137: SBF-like CPA 45.7 3.2E+02 0.007 28.6 12.5 49 148-199 7-55 (313)
114 PF03547 Mem_trans: Membrane t 45.4 2.8E+02 0.0061 29.4 12.4 86 146-233 244-335 (385)
115 PF02601 Exonuc_VII_L: Exonucl 45.4 43 0.00094 35.0 6.0 50 497-547 30-87 (319)
116 PF03977 OAD_beta: Na+-transpo 44.3 4.2E+02 0.0091 28.2 18.0 91 132-227 201-292 (360)
117 PRK10711 hypothetical protein; 42.5 3.6E+02 0.0077 27.2 11.5 138 145-287 62-225 (231)
118 COG2431 Predicted membrane pro 42.0 4.1E+02 0.009 27.5 15.2 46 209-254 168-213 (297)
119 PRK10711 hypothetical protein; 42.0 3.8E+02 0.0082 27.0 12.6 111 165-288 59-169 (231)
120 TIGR00808 malonate_madM malona 40.7 40 0.00087 33.1 4.3 37 2-38 97-133 (254)
121 cd00293 USP_Like Usp: Universa 40.6 77 0.0017 26.8 6.0 52 493-546 52-104 (130)
122 PRK04288 antiholin-like protei 40.5 4E+02 0.0086 26.8 11.8 39 145-184 67-105 (232)
123 TIGR00659 conserved hypothetic 40.5 3.9E+02 0.0085 26.8 12.0 137 145-286 61-223 (226)
124 PF00582 Usp: Universal stress 39.8 82 0.0018 26.9 6.1 39 534-586 101-139 (140)
125 cd01988 Na_H_Antiporter_C The 39.6 72 0.0016 27.7 5.7 40 534-587 93-132 (132)
126 TIGR00659 conserved hypothetic 39.1 4.1E+02 0.009 26.6 17.1 111 165-288 58-168 (226)
127 PF04172 LrgB: LrgB-like famil 38.7 3.7E+02 0.008 26.7 10.9 138 145-287 51-214 (215)
128 TIGR02230 ATPase_gene1 F0F1-AT 38.4 75 0.0016 27.6 5.2 21 20-40 51-71 (100)
129 COG0679 Predicted permeases [G 38.2 4.8E+02 0.01 27.1 26.5 135 146-287 168-305 (311)
130 cd00947 TBP_aldolase_IIB Tagat 37.5 3.2E+02 0.007 28.2 10.7 136 410-548 9-176 (276)
131 COG0798 ACR3 Arsenite efflux p 36.7 5.5E+02 0.012 27.4 20.5 48 206-254 249-296 (342)
132 cd01984 AANH_like Adenine nucl 36.7 40 0.00087 27.5 3.3 46 427-472 35-83 (86)
133 COG0395 UgpE ABC-type sugar tr 36.5 2.8E+02 0.0061 28.7 10.2 76 6-84 71-152 (281)
134 PRK09903 putative transporter 36.0 5.2E+02 0.011 26.8 15.6 133 146-289 173-310 (314)
135 KOG1965 Sodium/hydrogen exchan 34.8 89 0.0019 35.4 6.4 71 177-251 102-181 (575)
136 PF04172 LrgB: LrgB-like famil 34.8 4.7E+02 0.01 26.0 12.7 111 165-288 48-158 (215)
137 PF03686 UPF0146: Uncharacteri 33.9 61 0.0013 29.4 4.1 37 416-452 71-107 (127)
138 COG1570 XseA Exonuclease VII, 33.8 59 0.0013 35.7 4.8 50 497-547 151-205 (440)
139 PRK04125 murein hydrolase regu 31.6 4.2E+02 0.0092 24.5 9.7 69 132-202 19-92 (141)
140 PRK08185 hypothetical protein; 31.0 3.6E+02 0.0078 28.0 9.8 137 409-548 8-177 (283)
141 COG0589 UspA Universal stress 30.5 87 0.0019 27.7 4.8 12 534-545 112-123 (154)
142 PRK15475 oxaloacetate decarbox 29.9 7.5E+02 0.016 26.8 14.4 94 128-227 267-363 (433)
143 PRK09903 putative transporter 29.8 6.5E+02 0.014 26.1 12.4 105 148-255 12-119 (314)
144 PRK04148 hypothetical protein; 29.3 70 0.0015 29.3 3.8 36 418-453 80-115 (134)
145 PRK12737 gatY tagatose-bisphos 29.2 3.6E+02 0.0079 27.9 9.5 137 409-548 13-183 (284)
146 TIGR00828 EIID-AGA PTS system, 28.7 2.6E+02 0.0056 28.9 8.2 55 139-193 58-131 (271)
147 PRK15456 universal stress prot 28.7 1.4E+02 0.0031 26.6 5.9 75 495-587 66-142 (142)
148 PRK14853 nhaA pH-dependent sod 28.7 8.2E+02 0.018 26.9 13.2 28 168-195 58-85 (423)
149 PRK12857 fructose-1,6-bisphosp 27.7 3.6E+02 0.0077 28.0 9.2 143 399-548 7-183 (284)
150 PF05982 DUF897: Domain of unk 27.3 6.9E+02 0.015 26.5 11.1 83 207-289 58-141 (327)
151 TIGR00832 acr3 arsenical-resis 27.2 7.6E+02 0.016 26.0 14.2 90 149-247 17-117 (328)
152 COG2855 Predicted membrane pro 27.1 7.8E+02 0.017 26.2 16.7 89 2-100 84-176 (334)
153 PRK15477 oxaloacetate decarbox 27.1 8.3E+02 0.018 26.5 14.5 94 128-227 267-363 (433)
154 PRK15476 oxaloacetate decarbox 27.0 8.4E+02 0.018 26.5 14.5 94 128-227 267-363 (433)
155 COG1346 LrgB Putative effector 26.6 6.7E+02 0.014 25.2 20.4 175 70-289 48-229 (230)
156 PRK09982 universal stress prot 26.0 1.1E+02 0.0024 27.5 4.7 11 534-544 102-112 (142)
157 PRK15005 universal stress prot 25.8 1.7E+02 0.0037 25.9 5.9 73 497-587 70-144 (144)
158 PRK11103 PTS system mannose-sp 25.2 3.1E+02 0.0068 28.4 8.1 21 139-159 68-88 (282)
159 TIGR01858 tag_bisphos_ald clas 24.3 4.8E+02 0.01 27.1 9.3 70 410-481 12-84 (282)
160 KOG2310 DNA repair exonuclease 24.1 81 0.0018 35.4 3.8 52 429-480 41-100 (646)
161 TIGR00841 bass bile acid trans 23.3 8.2E+02 0.018 25.1 11.5 18 181-198 14-31 (286)
162 PRK00286 xseA exodeoxyribonucl 22.9 1.5E+02 0.0033 32.5 5.7 50 497-547 151-204 (438)
163 PRK09561 nhaA pH-dependent sod 22.8 1.4E+02 0.0031 32.3 5.3 54 169-223 56-111 (388)
164 PF02673 BacA: Bacitracin resi 22.8 4E+02 0.0088 27.2 8.4 44 214-257 161-204 (259)
165 PRK15118 universal stress glob 22.5 1.2E+02 0.0025 27.2 4.0 12 534-545 102-113 (144)
166 PRK10116 universal stress prot 22.4 1.3E+02 0.0029 26.6 4.5 28 519-546 85-113 (142)
167 PRK09195 gatY tagatose-bisphos 22.2 5.8E+02 0.012 26.5 9.5 136 410-548 14-183 (284)
168 PRK09546 zntB zinc transporter 20.9 1.7E+02 0.0036 30.7 5.4 29 172-200 266-297 (324)
169 PRK09560 nhaA pH-dependent sod 20.7 1.5E+02 0.0032 32.2 4.8 55 168-223 55-111 (389)
170 COG5505 Predicted integral mem 20.7 1E+03 0.022 25.2 20.8 243 1-264 77-358 (384)
No 1
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=100.00 E-value=9.1e-121 Score=1051.10 Aligned_cols=560 Identities=34% Similarity=0.636 Sum_probs=511.9
Q ss_pred CCchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHhhHHHH-HHHhhccccCCchHHH
Q 043315 1 MDTTRILQVAKNALSVGMPCFLLSFNFTISLTLVLRENIPGMVGGSFPFLLSMVLSLNYFPVV-HALSELNLLTSDLSQL 79 (587)
Q Consensus 1 mD~~~l~~~~~~a~~ig~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts~pVv-~iL~el~ll~s~~Grl 79 (587)
||++.+||++|+++.+|++++++||++|++++++++....+.......+++|+++|+||+||+ ++|+|+|+++|+.||+
T Consensus 123 ~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l~~~~~~~~~~~~~l~~g~alS~Ts~pVv~riL~Elkll~s~~Grl 202 (832)
T PLN03159 123 MDISVIRRTGKKALAIAIAGMALPFCIGLAFSFIFHQVSRNVHQGTFILFLGVALSVTAFPVLARILAEIKLINTELGRI 202 (832)
T ss_pred CcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhHHHHHHHHHHcCcccCcHHHH
Confidence 699999999999999999999999999999988884421111223467899999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh--c------C---------------hhHHHHHHHHHcCCCCcchhHHHHHH--HHH
Q 043315 80 AISCAILHKTIGWLSVALTSAIIK--S------D---------------KGPAVCWIIKINPEGKPVKEIYVLAI--GAL 134 (587)
Q Consensus 80 als~avi~Di~~~ill~i~~~~~~--s------~---------------~rp~~~~l~~r~~~g~~~~e~~i~~i--~~~ 134 (587)
++++++++|+++|++++++.+..+ + + +||++.|+.||++++++.+|.+++++ +++
T Consensus 203 aLsaavv~Dl~~~ilLav~~~l~~~~~~~~~~l~~~l~~~~f~~~~~~v~r~~~~~~~r~~~~~~~~~e~~v~~il~~vl 282 (832)
T PLN03159 203 AMSAALVNDMCAWILLALAIALAENDSTSLASLWVLLSSVAFVLFCFYVVRPGIWWIIRRTPEGETFSEFYICLILTGVM 282 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCcccchhHHHHHHHH
Confidence 999999999999999988766541 1 1 68999999999999888888887665 778
Q ss_pred HHHHHHHHhChhHHHHHHHhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccc-hhHHHHHHHHHHH
Q 043315 135 VMGFLSDAIGTTYLLGALLMGLIIPPGPPLGIAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQNG-SRLISFEIIIGAS 213 (587)
Q Consensus 135 ~~a~lae~~G~~~ilGAFlaGL~lp~~~p~~~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~~-~~~~~~~~l~~~a 213 (587)
++++++|.+|+|+++|||++|+++|+. |+++++.+|++++++++|+|+||+++||++|+..+.+. .|.+ ++++++++
T Consensus 283 ~~a~lae~~Gl~~ilGAFlaGl~lp~~-~~~~~l~ekle~~~~~lflPlFFv~vGl~idl~~l~~~~~~~~-~~~liv~a 360 (832)
T PLN03159 283 ISGFITDAIGTHSVFGAFVFGLVIPNG-PLGVTLIEKLEDFVSGLLLPLFFAISGLKTNVTKIQGPATWGL-LVLVIIMA 360 (832)
T ss_pred HHHHHHHHhCccHHHHHHHHhhccCCc-chHHHHHHHHHHHHHHHHHHHHHHHhhheeeHHHhcCchHHHH-HHHHHHHH
Confidence 899999999999999999999999985 89999999999999999999999999999999887654 4555 66777888
Q ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 043315 214 YLGKFVGSLLIWVFIKASIPNAVIFSCILSLKGIMDLIFILRWRIRKLIDKDTFTLAMLTHTAVTAVRTPLISLYYTPYR 293 (587)
Q Consensus 214 ~~~K~l~~~l~~~~~~~~~~~a~~lglll~~kG~~~li~~~i~~~~gli~~~~f~~lvl~~lvtt~i~~plv~~ly~p~~ 293 (587)
+++|+++++++++++|+|++|++.+|++||+||+++++++++|++.|+++++.|++++++++++|.+++|++.++|||+|
T Consensus 361 ~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~ig~~~gvi~~~~f~~lVl~avl~T~i~~Plv~~ly~p~r 440 (832)
T PLN03159 361 SAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGRDQEVLDDESFAVMVLVAVAMTALITPVVTVVYRPAR 440 (832)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHHHHhcCccCchhhhHHHHHHHHHHHHHHHHHHHHhCHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccccccCCCCccccceeeecCCcccccccccccCCCCCCCCCHHHHHHHHHHhcCCCCCCcEEEEEEee
Q 043315 294 KLEITQSMEDRMRTLCTTPVNSELRKNLMENTPITQHKIYVENSKSGEKPRPFVHSLITLLKAFNSSEMSPLCACVLHLV 373 (587)
Q Consensus 294 ~~~~~~~~~~~~r~~~~~~~~~elril~c~~~~~~~~~v~~~~~~~~~~~~~~v~~li~Ll~~~~~~~~sp~~v~~lhlv 373 (587)
|| ..||+|++|+.++++|+|||+| +|+|+ |++++|+|++++++++++|+++|++||+
T Consensus 441 k~-----~~~~~r~i~~~~~~~elriL~c---------v~~~~---------~v~~li~Lle~s~~t~~sp~~vy~lhLv 497 (832)
T PLN03159 441 RL-----VGYKRRTIQRSKHDAELRMLVC---------VHTPR---------NVPTIINLLEASHPTKRSPICIYVLHLV 497 (832)
T ss_pred hh-----ccccccccccCCCCCceeEEEE---------eccCC---------cHHHHHHHHHhcCCCCCCCceEEEEEEE
Confidence 99 9999999999999999999999 99999 9999999999999999999999999999
Q ss_pred eccCCCcccccccccccc-c----cCCCchhHHHHHHHhhhc-CCceEEEEEEEEecCCChHHHHHHHHhhcCCCEEEec
Q 043315 374 ELVGRAAPLLVPHNTHKR-K----IKENSTDRIMRAMTKFSK-SSQVTIQPFILIAPYKTMYESISKLAQDEFIPFIILP 447 (587)
Q Consensus 374 el~~r~s~~l~~~~~~~~-~----~~~~~~~~i~~~f~~~~~-~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~~lIilp 447 (587)
||+||++|++++|+.+++ . ....++|+++++|++|++ .+.|+|+++|++|||++||+|||++|+|+++++||+|
T Consensus 498 eL~~r~~~~l~~h~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~v~v~~~t~vs~~~~mh~dIc~~A~d~~~slIilp 577 (832)
T PLN03159 498 ELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHAGCVSVQPLTAISPYSTMHEDVCNLAEDKRVSLIIIP 577 (832)
T ss_pred eecCCCccceeeeecccccccccccccccccHHHHHHHHHHhhcCceEEEEEEEEeCcccHHHHHHHHHHhcCCCEEEEC
Confidence 999999999999987654 1 133558999999999965 4689999999999999999999999999999999999
Q ss_pred cCCCccccccc---------hhHHHhhccCCCcEEEEEeCCCC----------------------CC-------------
Q 043315 448 SHQSHKMQQGG---------GFNCKIQNCAPCSVGIYVDRGIN----------------------DL------------- 483 (587)
Q Consensus 448 ~h~~~~~~dg~---------~~n~~vl~~apcsVgIlvdRg~~----------------------dd------------- 483 (587)
|||+|+. ||+ ++|+|||++||||||||||||.. ||
T Consensus 578 fhk~~~~-dg~~~~~~~~~r~~n~~VL~~ApCsVgIlVDRg~~~~~~~~~~~~~~~v~~~F~GG~DDREALa~a~rma~~ 656 (832)
T PLN03159 578 FHKQQTV-DGGMEATNPAFRGVNQNVLANAPCSVGILVDRGLSGATRLASNQVSHHVAVLFFGGPDDREALAYAWRMSEH 656 (832)
T ss_pred CCCccCC-CCCccccCchHHHHHHHHHccCCCCEEEEEeCCCCccccccccccceeEEEEecCCcchHHHHHHHHHHhcC
Confidence 9999997 764 89999999999999999999832 66
Q ss_pred ----------c-----cc-------------------cCchhhcchHHHHHHHHhhccCCCceEEEEEEecChHHHHHHH
Q 043315 484 ----------I-----EA-------------------EDVSERILDDNVINDFKSRNLGNACVLCHHVDVTNTLEAWEVI 529 (587)
Q Consensus 484 ----------~-----~~-------------------~~~~~~~~d~~~~~~~~~~~~~~~~v~y~e~~v~~~~~~~~~i 529 (587)
. .+ +++.|+++|+++++|||.++..+++|.|.||.|+|++||+++|
T Consensus 657 p~v~lTVirf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~D~~~~~ef~~~~~~~~~v~y~E~~V~~~~e~~~~l 736 (832)
T PLN03159 657 PGITLTVMRFIPGEDAAPTASQPASSPSDPRIPTVETDGKKERQLDEEYINEFRARNAGNESIVYTEKVVSNGEETVAAI 736 (832)
T ss_pred CCeEEEEEEEEcccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHHH
Confidence 0 00 0245888999999999999998999999999999999999999
Q ss_pred HhhcCCCcEEEEcccCCCCCccccCCCCCCCCCcccccccccccCCCCCCCccEEEeC
Q 043315 530 RSSDNDYDLVVVGKRRRPNSSRERDMTPWTDYEELRVIGDMLASQDFCGGMNPVLVVQ 587 (587)
Q Consensus 530 ~~~~~~~dLviVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~Las~d~~~~~~svLVvq 587 (587)
|+++++|||+||||+|+.+|++|+||+||+||||||+|||+|||+|| ++++||||||
T Consensus 737 ~~~~~~ydL~iVGr~~~~~~~~~~gL~~w~e~pELG~iGD~LaS~d~-~~~~SVLVvQ 793 (832)
T PLN03159 737 RSMDSAHDLFIVGRGQGMISPLTAGLTDWSECPELGAIGDLLASSDF-AATVSVLVVQ 793 (832)
T ss_pred HHhhccCcEEEEecCCCCCcchhccccccccCCccchhhhHHhcCCC-CCceeEEEEE
Confidence 99999999999999998889999999999999999999999999999 9999999999
No 2
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.8e-99 Score=859.77 Aligned_cols=559 Identities=34% Similarity=0.522 Sum_probs=509.7
Q ss_pred CCchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCC----CChHHHHHHHHHHHhhHHHH-HHHhhccccCC
Q 043315 1 MDTTRILQVAKNALSVGMPCFLLSFNFTISLTLVLRENIP-GMV----GGSFPFLLSMVLSLNYFPVV-HALSELNLLTS 74 (587)
Q Consensus 1 mD~~~l~~~~~~a~~ig~~~~~ip~~~g~~~~~~l~~~~~-~~~----~~~~~l~lg~~ls~Ts~pVv-~iL~el~ll~s 74 (587)
+|.+.++|++|++..||++++++|++.|.++...+..... ... ...+..++..++|.||||++ ++|.|+|++||
T Consensus 103 ~d~~~i~~~~kka~~I~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~tsfpv~~~iL~eLkll~s 182 (769)
T KOG1650|consen 103 IDLRVIRRTGKKAIVIAIASVVLPFGLGFGLAFLLSDTKADKEDGALFLPFEILFILSAQSITSFPVLARILAELKLLNS 182 (769)
T ss_pred hhHHHhhccCceeEEEEEEEeehhhHhhhhhhhhccccccccccccccccHHHHHHHHHhhcchhHHHHHHHHHhhchhc
Confidence 6899999999999999999999999999999888754432 111 12367889999999999999 99999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhh----c-----C---------------hhHHHHHHHHHcCCCCcchhHHHHH
Q 043315 75 DLSQLAISCAILHKTIGWLSVALTSAIIK----S-----D---------------KGPAVCWIIKINPEGKPVKEIYVLA 130 (587)
Q Consensus 75 ~~Grlals~avi~Di~~~ill~i~~~~~~----s-----~---------------~rp~~~~l~~r~~~g~~~~e~~i~~ 130 (587)
|+||+|+++++++|+++|+++++..+..+ + | +||.+.|+.||+|||+|+++.|++.
T Consensus 183 e~Grla~saa~v~dv~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~p~~~wi~kr~pe~~~~~~~~~~~ 262 (769)
T KOG1650|consen 183 ELGRLALSAAVVNDVAGWILLALALAFSSELKLSPLRSVWDLVLVIGFVLFLFFVVRPLMKWIIKRTPEGKPVSDAYICV 262 (769)
T ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHheeeehhhhHHHHhhcCCCCCccccceehh
Confidence 99999999999999999998877766652 1 1 7999999999999999999999877
Q ss_pred H--HHHHHHHHHHHhC-hhHHHHHHHhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHH
Q 043315 131 I--GALVMGFLSDAIG-TTYLLGALLMGLIIPPGPPLGIAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQNGSRLISFE 207 (587)
Q Consensus 131 i--~~~~~a~lae~~G-~~~ilGAFlaGL~lp~~~p~~~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~~~~~~~~~ 207 (587)
+ .+++++++++.+| +|+++|||+.|+++|++||+++++.||+|++++++|+|+||+.+|+++|+..+.. |.. ..
T Consensus 263 ~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~~p~g~~L~ekle~~~~~~llPl~~~~~G~k~di~~i~~--~~~-~~ 339 (769)
T KOG1650|consen 263 TLLGVLASAFLTDLIGGIHSIFGAFILGLAIPHGPPLGSALIEKLEDLVSGLLLPLYFAISGLKTDISRINK--WGA-LI 339 (769)
T ss_pred hHHHHHHHHHHHHHhccccccchhheEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHHhhccceeHHHHHH--HHH-HH
Confidence 6 7899999999999 8999999999999999999999999999999999999999999999999998865 665 67
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 043315 208 IIIGASYLGKFVGSLLIWVFIKASIPNAVIFSCILSLKGIMDLIFILRWRIRKLIDKDTFTLAMLTHTAVTAVRTPLISL 287 (587)
Q Consensus 208 ~l~~~a~~~K~l~~~l~~~~~~~~~~~a~~lglll~~kG~~~li~~~i~~~~gli~~~~f~~lvl~~lvtt~i~~plv~~ 287 (587)
..+..++++|++++..++.++|+|+||++++|++||+||.+|++.++.|++.|+++++.|++++++++++|+++||+++.
T Consensus 340 ~~i~~~~~~K~l~t~~~sl~~k~p~~~~l~l~~lm~~kgl~el~~~~~~~~~~~~~~~~f~~~vl~alv~t~I~~~~l~~ 419 (769)
T KOG1650|consen 340 RTILIFGAVKLLSTLGTSLYCKLPLRDSLALGLLMSTKGLVELIVLNTGLDRKILSDEGFTVMVLMALVSTFITPPLLMF 419 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhHHHHHHHHHHhhcCCcccchHHHHHHHHHHHHhhHHHHHHH
Confidence 77888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccccccccccccccccccCCCCccccceeeecCCcccccccccccCCCCCCCCCHHHHHHHHHHhcCCCCCCcEE
Q 043315 288 YYTPYRKLEITQSMEDRMRTLCTTPVNSELRKNLMENTPITQHKIYVENSKSGEKPRPFVHSLITLLKAFNSSEMSPLCA 367 (587)
Q Consensus 288 ly~p~~~~~~~~~~~~~~r~~~~~~~~~elril~c~~~~~~~~~v~~~~~~~~~~~~~~v~~li~Ll~~~~~~~~sp~~v 367 (587)
+|||+|+| ..|++|++|+.++|+|+|+++| +|+++ |++++++++|++++++++|+++
T Consensus 420 ~y~p~~~~-----~~y~~~~i~~~~~~~~Lril~c---------l~~~~---------~is~~i~~le~~~~~~~~p~~v 476 (769)
T KOG1650|consen 420 LYDPTRKY-----HGYKKRGIQHLKPNSELRILTC---------LHGPE---------NISGIINLLELSSGSLESPLSV 476 (769)
T ss_pred hcchhhhc-----CceEeehhhhcCCCCceEEEEE---------ecCCC---------cchHHHHHHHHcCCCCCCCcce
Confidence 99999999 8899999999999999999999 99999 9999999999999988889999
Q ss_pred EEEEeeeccCCCcccccccccccc-c--cCCCchhHHHHHHHhhhc--CCceEEEEEEEEecCCChHHHHHHHHhhcCCC
Q 043315 368 CVLHLVELVGRAAPLLVPHNTHKR-K--IKENSTDRIMRAMTKFSK--SSQVTIQPFILIAPYKTMYESISKLAQDEFIP 442 (587)
Q Consensus 368 ~~lhlvel~~r~s~~l~~~~~~~~-~--~~~~~~~~i~~~f~~~~~--~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~~ 442 (587)
|++|++||++|+.|++++|+.+++ . .....++++..+|+.|.+ ...|.++++|+++|+++||+|||.+|.+++++
T Consensus 477 ~~lhlveL~~~~~~~li~h~~~~~~~~~~~s~~~~~i~~aF~~f~~~~~~~v~v~~~Ta~s~~~~m~edic~la~~~~~~ 556 (769)
T KOG1650|consen 477 YALHLVELVGRATPLLISHKLRKNGRVESRSSSSDQINVAFEAFEKLSQEGVMVRTFTALSPEKLMHEDICTLALDKGVS 556 (769)
T ss_pred eeeeeeecccccchhhhhhhhccccccccccccchhhHHHHHHHHHhcCCcEEEEeehhhCChhhchhhhhHHHHhhCCc
Confidence 999999999999999999987654 2 233456799999999965 37899999999999999999999999999999
Q ss_pred EEEeccCCCccccccc---------hhHHHhhccCCCcEEEEEeCCCC----------------------CC--------
Q 043315 443 FIILPSHQSHKMQQGG---------GFNCKIQNCAPCSVGIYVDRGIN----------------------DL-------- 483 (587)
Q Consensus 443 lIilp~h~~~~~~dg~---------~~n~~vl~~apcsVgIlvdRg~~----------------------dd-------- 483 (587)
+|++||||+|+. ||. .+|++++++|||||||+||||.. ||
T Consensus 557 liilpfhk~~~~-~~~~e~~~~~~r~in~~vl~~aPCSVgIlvdRg~~~~~~~~~~~~~~~v~~lF~GG~DDrEALa~~~ 635 (769)
T KOG1650|consen 557 LIILPFHKHWSD-GGTLESDDPAIRELNRNVLKNAPCSVGILVDRGLRRSGVTQKRGSSYKVVVLFLGGKDDREALALAK 635 (769)
T ss_pred EEEeehhhhccC-CCceecCcHHHHHHHHHHHhcCCCeEEEEEecCcccccceecccceeEEEEEecCChhhHHHHHHHH
Confidence 999999999983 322 89999999999999999999610 66
Q ss_pred ---------------cc-----cc---CchhhcchHHHHHHH-HhhccCCCceEEE-EEEecChHHHHHHHHhhcCCCcE
Q 043315 484 ---------------IE-----AE---DVSERILDDNVINDF-KSRNLGNACVLCH-HVDVTNTLEAWEVIRSSDNDYDL 538 (587)
Q Consensus 484 ---------------~~-----~~---~~~~~~~d~~~~~~~-~~~~~~~~~v~y~-e~~v~~~~~~~~~i~~~~~~~dL 538 (587)
.+ ++ .++++.+|++..+++ +..++.+.++.|. ||.|+|+.||.+++|++++||||
T Consensus 636 rm~~~~~v~lTVirf~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~ek~v~~~~et~~~~~~~~~~ydL 715 (769)
T KOG1650|consen 636 RMAENPRVTLTVIRFFPDESKYNRKVLVEVGKMLDQEGLEDFVKSTRESNLDIIYAEEKIVLNGAETTALLRSITEDYDL 715 (769)
T ss_pred HHhhCCceEEEEEEeeccchhhcccccchhhhhhhhhHHHHHHHHhhhchhhhhhhhHHHHhcchhHHHHHHHhccccce
Confidence 11 11 367889999999999 7677777889999 69999999999999999999999
Q ss_pred EEEcccCCCCCccccCCCCCCCCCcccccccccccCCCCCCCccEEEeC
Q 043315 539 VVVGKRRRPNSSRERDMTPWTDYEELRVIGDMLASQDFCGGMNPVLVVQ 587 (587)
Q Consensus 539 viVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~Las~d~~~~~~svLVvq 587 (587)
++|||+++.+++.+.|++||+||||||+|||+|+|+|| .+++||||+|
T Consensus 716 ~ivGr~~~~~~~~t~gl~~W~e~pELg~IGd~las~~~-~~~~svlvvq 763 (769)
T KOG1650|consen 716 FIVGRSHGMLSEATGGLSEWSECPELGVIGDLLASSDF-SSKVSVLVVQ 763 (769)
T ss_pred EEEecccccccchhcCchhcccCccccccCcccccccc-CccceEEEEE
Confidence 99999999999999999999999999999999999999 9999999998
No 3
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=100.00 E-value=6.9e-36 Score=335.05 Aligned_cols=280 Identities=17% Similarity=0.217 Sum_probs=241.4
Q ss_pred CCchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHhhHHHH-HHHhhccccCCchHHH
Q 043315 1 MDTTRILQVAKNALSVGMPCFLLSFNFTISLTLVLRENIPGMVGGSFPFLLSMVLSLNYFPVV-HALSELNLLTSDLSQL 79 (587)
Q Consensus 1 mD~~~l~~~~~~a~~ig~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts~pVv-~iL~el~ll~s~~Grl 79 (587)
+|++.+++.++.++..++.++++|+++++++++.+++. +..++++|+++|.||++++ ++|+|+|+++|+.||+
T Consensus 76 ~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G~~ 149 (558)
T PRK10669 76 FSLKDLMAVKSIAIPGAIAQIAVATLLGMALSAVLGWS------LMTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQI 149 (558)
T ss_pred CCHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCC------HHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcchHH
Confidence 58899999998888889999999999999888877643 3678899999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh----h---c------------------------ChhHHHHHHHHHcCCCCcchhHHH
Q 043315 80 AISCAILHKTIGWLSVALTSAII----K---S------------------------DKGPAVCWIIKINPEGKPVKEIYV 128 (587)
Q Consensus 80 als~avi~Di~~~ill~i~~~~~----~---s------------------------~~rp~~~~l~~r~~~g~~~~e~~i 128 (587)
++++++++|+++|++++++..+. + + ..|++++|+.++.++++ .+|.++
T Consensus 150 ~l~~~~~~Dl~~i~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~e~~~ 228 (558)
T PRK10669 150 AIGWLIVEDLVMVLTLVLLPAVAGMMEQGDVGFATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARSAATG-SRELFT 228 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchHHH
Confidence 99999999999998887764321 0 0 05788889998877654 567666
Q ss_pred HHH--HHHHHHHH-HHHhChhHHHHHHHhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHH
Q 043315 129 LAI--GALVMGFL-SDAIGTTYLLGALLMGLIIPPGPPLGIAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQNGSRLIS 205 (587)
Q Consensus 129 ~~i--~~~~~a~l-ae~~G~~~ilGAFlaGL~lp~~~p~~~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~~~~~~~ 205 (587)
..+ +++++++. ++.+|+|+++|||++|+++|+. |+++++.+...++ .++|+|+||+++|+++|+..+... +..
T Consensus 229 l~~l~~~l~~a~~~~~~lGls~~lGAflaGl~l~~~-~~~~~~~~~~~~~-~~~f~plFFv~~G~~~d~~~l~~~-~~~- 304 (558)
T PRK10669 229 LSVLALALGIAFGAVELFDVSFALGAFFAGMVLNES-ELSHRAAHDTLPL-RDAFAVLFFVSVGMLFDPMILIQQ-PLA- 304 (558)
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHhCC-hhHHHHHHHHhhH-HHHHHHHHHHHhhhhcCHHHHHHH-HHH-
Confidence 544 66777764 6999999999999999999986 7888888888886 789999999999999999877533 233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 043315 206 FEIIIGASYLGKFVGSLLIWVFIKASIPNAVIFSCILSLKGIMDLIFILRWRIRKLIDKDTFTLAMLTHTAVTAVRTPLI 285 (587)
Q Consensus 206 ~~~l~~~a~~~K~l~~~l~~~~~~~~~~~a~~lglll~~kG~~~li~~~i~~~~gli~~~~f~~lvl~~lvtt~i~~plv 285 (587)
.+.++++.+++|++++++.++++|+++|+++.+|++|++||+++++++..|++.|+|+++.|+.+++++++|++++|++.
T Consensus 305 ~~~~~~~~~v~K~~~~~~~~~~~g~~~~~a~~~gl~l~~~Gef~lii~~~~~~~gii~~~~~~~~v~~~~~t~~~~P~l~ 384 (558)
T PRK10669 305 VLATLAIIVFGKSLAAFFLVRLFGHSRRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLF 384 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHhcccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566678899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHhccc
Q 043315 286 SLYYTP 291 (587)
Q Consensus 286 ~~ly~p 291 (587)
++..|-
T Consensus 385 ~~~~~~ 390 (558)
T PRK10669 385 TLLERY 390 (558)
T ss_pred HHhhHH
Confidence 886553
No 4
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=100.00 E-value=4.2e-35 Score=330.89 Aligned_cols=279 Identities=14% Similarity=0.219 Sum_probs=233.7
Q ss_pred CCchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHhhHHHH-HHHhhccccCCchHHH
Q 043315 1 MDTTRILQVAKNALSVGMPCFLLSFNFTISLTLVLRENIPGMVGGSFPFLLSMVLSLNYFPVV-HALSELNLLTSDLSQL 79 (587)
Q Consensus 1 mD~~~l~~~~~~a~~ig~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts~pVv-~iL~el~ll~s~~Grl 79 (587)
+|++.+|+.+|+++..|..++++|+++++.++++++.. +..++++|.+++.||++++ ++|+|+|+++|+.||.
T Consensus 75 l~~~~l~~~~~~~~~~g~~qv~~~~~~~~~~~~~~g~~------~~~al~ig~~la~SStaiv~~~L~e~~~l~t~~G~~ 148 (621)
T PRK03562 75 LDPQRLWKLRRSIFGGGALQMVACGGLLGLFCMLLGLR------WQVALLIGLGLALSSTAIAMQAMNERNLMVTQMGRS 148 (621)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC------HHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHH
Confidence 68999999999999999999999999998888877643 4678999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh----h-c----C----------------hhHHHHHHHHHcCCCCcchhHHHHHH--H
Q 043315 80 AISCAILHKTIGWLSVALTSAII----K-S----D----------------KGPAVCWIIKINPEGKPVKEIYVLAI--G 132 (587)
Q Consensus 80 als~avi~Di~~~ill~i~~~~~----~-s----~----------------~rp~~~~l~~r~~~g~~~~e~~i~~i--~ 132 (587)
++++++++|+++|.+++++..+. + + + .|++++++.++..+. +.+|.++..+ +
T Consensus 149 ~l~~ll~~Dl~~i~ll~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~-~~~e~~~~~~l~l 227 (621)
T PRK03562 149 AFAILLFQDIAAIPLVAMIPLLAASGASTTLGAFALSALKVAGALALVVLGGRYVTRPALRFVARS-GLREVFTAVALFL 227 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchHHHHHHHHH
Confidence 99999999999998888764432 1 0 0 233333333332211 1356665544 7
Q ss_pred HHHHHHHHHHhChhHHHHHHHhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHH
Q 043315 133 ALVMGFLSDAIGTTYLLGALLMGLIIPPGPPLGIAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQNGSRLISFEIIIGA 212 (587)
Q Consensus 133 ~~~~a~lae~~G~~~ilGAFlaGL~lp~~~p~~~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~~~~~~~~~~l~~~ 212 (587)
+++++++++.+|+|+++|||++|+++++. ++++++++++++| .++|+|+||+++||++|+..+... ++. ++.++++
T Consensus 228 v~~~a~la~~~Gls~~lGAFlAGl~l~~~-~~~~~le~~i~pf-~~lll~lFFi~vG~~id~~~l~~~-~~~-il~~~~~ 303 (621)
T PRK03562 228 VFGFGLLMEEVGLSMALGAFLAGVLLASS-EYRHALESDIEPF-KGLLLGLFFIAVGMSIDFGTLLEN-PLR-ILILLLG 303 (621)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHhcCC-ccHHHHHHHHHHH-HHHHHHHHHHHhhhhccHHHHHHH-HHH-HHHHHHH
Confidence 88999999999999999999999999997 7899999999999 799999999999999999877543 333 4455666
Q ss_pred HHHHHHHHHHHHHHHhCCChHHHHHHHHHhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 043315 213 SYLGKFVGSLLIWVFIKASIPNAVIFSCILSLKGIMDLIFILRWRIRKLIDKDTFTLAMLTHTAVTAVRTPLISLYYTP 291 (587)
Q Consensus 213 a~~~K~l~~~l~~~~~~~~~~~a~~lglll~~kG~~~li~~~i~~~~gli~~~~f~~lvl~~lvtt~i~~plv~~ly~p 291 (587)
.+++|++++++.++++|+++++++.+|++|+++|+++++++++|.+.|+++++.|+.+++++++|++++|++. .+|+|
T Consensus 304 ~~~~K~~~~~~~~~~~g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~~~~~lv~~v~lS~~~tP~l~-~~~~~ 381 (621)
T PRK03562 304 FLAIKIAMLWLLARPLGVPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPEWAKLLTLAVALSMAATPLLL-VLLDR 381 (621)
T ss_pred HHHHHHHHHHHHHHHhCCCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH-HhhhH
Confidence 8899999999999999999999999999999999999999999999999999999999988877666555554 44554
No 5
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=100.00 E-value=1.5e-34 Score=325.81 Aligned_cols=279 Identities=17% Similarity=0.205 Sum_probs=233.4
Q ss_pred CCchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHhhHHHH-HHHhhccccCCchHHH
Q 043315 1 MDTTRILQVAKNALSVGMPCFLLSFNFTISLTLVLRENIPGMVGGSFPFLLSMVLSLNYFPVV-HALSELNLLTSDLSQL 79 (587)
Q Consensus 1 mD~~~l~~~~~~a~~ig~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts~pVv-~iL~el~ll~s~~Grl 79 (587)
+|++.+|+.+|+++.+|..++++|+++++++.++++.. +..++++|++++.||++++ ++|+|+|+++|+.||+
T Consensus 75 l~~~~l~~~~~~~~~~g~~~v~~t~~~~~~~~~~~g~~------~~~a~~~g~~la~SSTaiv~~iL~e~~~~~t~~G~~ 148 (601)
T PRK03659 75 LNPSKLWQLRRSIFGVGAAQVLLSAAVLAGLLMLTDFS------WQAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQL 148 (601)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC------HHHHHHHHHHHHHHHHHHHHHHHHHcccccCchHHH
Confidence 58999999999999999999999998877776665432 4678889999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh------cC----------------hhHHHHHHHHHcCCCCcchhHHHHHH--HHHH
Q 043315 80 AISCAILHKTIGWLSVALTSAIIK------SD----------------KGPAVCWIIKINPEGKPVKEIYVLAI--GALV 135 (587)
Q Consensus 80 als~avi~Di~~~ill~i~~~~~~------s~----------------~rp~~~~l~~r~~~g~~~~e~~i~~i--~~~~ 135 (587)
++++++++|+.+|.+++++..+.. .+ .|++.+++.++..+ .+.+|.++..+ ++++
T Consensus 149 ~l~vll~~Di~~i~ll~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~l~~vl~ 227 (601)
T PRK03659 149 GFSVLLFQDLAVIPALALVPLLAGSADEHFDWMKIGMKVLAFAGMLIGGRYLLRPLFRFIAA-SGVREVFTAAALLLVLG 227 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCchHHHHHHHHHHHH
Confidence 999999999999988887654431 00 23333333333211 12456666555 7889
Q ss_pred HHHHHHHhChhHHHHHHHhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHH
Q 043315 136 MGFLSDAIGTTYLLGALLMGLIIPPGPPLGIAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQNGSRLISFEIIIGASYL 215 (587)
Q Consensus 136 ~a~lae~~G~~~ilGAFlaGL~lp~~~p~~~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~~~~~~~~~~l~~~a~~ 215 (587)
++++++.+|+|+++|||++|+++|+. ++++++.++++++ .++|+|+||+++||++|+..+... |+. ++.++++.++
T Consensus 228 ~a~l~~~~Gls~~LGAFlaGl~l~~s-~~~~~l~~~i~pf-~~lll~lFFi~vGm~id~~~l~~~-~~~-il~~~~~~l~ 303 (601)
T PRK03659 228 SALFMDALGLSMALGTFIAGVLLAES-EYRHELEIAIEPF-KGLLLGLFFISVGMALNLGVLYTH-LLW-VLISVVVLVA 303 (601)
T ss_pred HHHHHHHhCccHHHHHHHHHHHhcCC-chHHHHHHHHHHH-HHHHHHHHHHHHhhhccHHHHHHh-HHH-HHHHHHHHHH
Confidence 99999999999999999999999996 7999999999998 799999999999999999877543 444 5566677789
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 043315 216 GKFVGSLLIWVFIKASIPNAVIFSCILSLKGIMDLIFILRWRIRKLIDKDTFTLAMLTHTAVTAVRTPLISLYYTP 291 (587)
Q Consensus 216 ~K~l~~~l~~~~~~~~~~~a~~lglll~~kG~~~li~~~i~~~~gli~~~~f~~lvl~~lvtt~i~~plv~~ly~p 291 (587)
+|++++++.++++|+++++++.+|++|+++|++++++++.|.+.|+++++.|+.+++++++|+++ +|++..+|+|
T Consensus 304 ~K~~~~~~~~~~~g~~~~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v~ls~~~-tP~l~~~~~~ 378 (601)
T PRK03659 304 VKGLVLYLLARLYGLRSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMALLLVVVTLSMMT-TPLLMKLIDK 378 (601)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999998888887655 5555555655
No 6
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.3e-34 Score=304.88 Aligned_cols=283 Identities=20% Similarity=0.284 Sum_probs=244.1
Q ss_pred CCchHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHH-HHhhcCCCCCChHHHHHHHHHHHhhHHHH-HHHhhccccCCchH
Q 043315 1 MDTTRILQVAKN-ALSVGMPCFLLSFNFTISLTLV-LRENIPGMVGGSFPFLLSMVLSLNYFPVV-HALSELNLLTSDLS 77 (587)
Q Consensus 1 mD~~~l~~~~~~-a~~ig~~~~~ip~~~g~~~~~~-l~~~~~~~~~~~~~l~lg~~ls~Ts~pVv-~iL~el~ll~s~~G 77 (587)
+|++.+||++|+ +...+..++.+|+.+|....+. ++.. +..++++|.+++.||++++ ++|+|+|.++++.|
T Consensus 77 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~------~~~al~lg~~l~~sS~~i~~~iL~e~~~~~~~~g 150 (397)
T COG0475 77 FDLERLKKVGRSVGLGVAQVGLTAPFLLGLLLLLGILGLS------LIAALFLGAALALSSTAIVLKILMELGLLKTREG 150 (397)
T ss_pred cCHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHhccC------hHHHHHHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 589999999999 9999999999999988665553 4332 3679999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh--c-----C-----------------hhHHHHHHHHHcCCCCcchhHHHHHH--
Q 043315 78 QLAISCAILHKTIGWLSVALTSAIIK--S-----D-----------------KGPAVCWIIKINPEGKPVKEIYVLAI-- 131 (587)
Q Consensus 78 rlals~avi~Di~~~ill~i~~~~~~--s-----~-----------------~rp~~~~l~~r~~~g~~~~e~~i~~i-- 131 (587)
|+++++++++|+.+|++++++....+ + + .|++.+|+.|+..+.+ .+|..+..+
T Consensus 151 ~~~l~~~i~~Di~~i~lLai~~~l~~~g~~~~~~~~~~~~~~~~f~~~~l~~g~~l~~~~~r~~~~~~-~~e~~~~~~l~ 229 (397)
T COG0475 151 QLILGALVFDDIAAILLLAIVPALAGGGSGSVGFILGLLLAILAFLALLLLLGRYLLPPLFRRVAKTE-SSELFILFVLL 229 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-chHHHHHHHHH
Confidence 99999999999999999999988762 1 0 3556666666643322 345555444
Q ss_pred HHHHHHHHHHHhChhHHHHHHHhhhhcCCCCCch-hHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHH
Q 043315 132 GALVMGFLSDAIGTTYLLGALLMGLIIPPGPPLG-IAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQNGSRLISFEIII 210 (587)
Q Consensus 132 ~~~~~a~lae~~G~~~ilGAFlaGL~lp~~~p~~-~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~~~~~~~~~~l~ 210 (587)
+++++++++|.+|+|+++|||++|+++++. +.+ +++++|++++.+++|+|+||+++||++|++.+... +.. +..++
T Consensus 230 i~l~~a~l~e~~gls~ilGAFlaGl~ls~~-~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~~-~~~-~l~~~ 306 (397)
T COG0475 230 LVLGAAYLAELLGLSMILGAFLAGLLLSES-EYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLEN-LLL-ILLLV 306 (397)
T ss_pred HHHHHHHHHHHhChhHHHHHHHHHHHhccc-ccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhcc-HHH-HHHHH
Confidence 999999999999999999999999999998 456 79999999998889999999999999999988754 333 66778
Q ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 043315 211 GASYLGKFVGSLLIWVFIKASIPNAVIFSCILSLKGIMDLIFILRWRIRKLIDKDTFTLAMLTHTAVTAVRTPLISLYYT 290 (587)
Q Consensus 211 ~~a~~~K~l~~~l~~~~~~~~~~~a~~lglll~~kG~~~li~~~i~~~~gli~~~~f~~lvl~~lvtt~i~~plv~~ly~ 290 (587)
.++.++|++++++.++.+|+++++++..|..++++|++.++.++.+.. +.++++.++..+.+++++|.+.+.+.+.+++
T Consensus 307 ~~~i~~K~~~~~~~~~~~g~~~~~~~~~g~~~~~~ge~~~v~~~~~~~-~~i~~~~~~~~v~~smi~t~i~~~~~~~~~~ 385 (397)
T COG0475 307 ALAILGKILGAYLAARLLGFSKRLALGIGLLLRQGGEFAFVLAGIALG-SAISEALLTAVVILSMITTPILPLLTPILLK 385 (397)
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHhhhhhhhHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999999999999999999999999999998876 6899999999999999999999988888886
Q ss_pred cccc
Q 043315 291 PYRK 294 (587)
Q Consensus 291 p~~~ 294 (587)
...+
T Consensus 386 ~~~~ 389 (397)
T COG0475 386 RLLK 389 (397)
T ss_pred Hhhc
Confidence 4433
No 7
>PRK05326 potassium/proton antiporter; Reviewed
Probab=99.94 E-value=1.1e-25 Score=252.61 Aligned_cols=281 Identities=13% Similarity=0.106 Sum_probs=228.6
Q ss_pred CCchHHHHhhhhHHHHHHHHHHHHHHHH-HHHHHHHHhhcCCCCCChHHHHHHHHHHHhhHHHH-HHHhhccc-cCCchH
Q 043315 1 MDTTRILQVAKNALSVGMPCFLLSFNFT-ISLTLVLRENIPGMVGGSFPFLLSMVLSLNYFPVV-HALSELNL-LTSDLS 77 (587)
Q Consensus 1 mD~~~l~~~~~~a~~ig~~~~~ip~~~g-~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts~pVv-~iL~el~l-l~s~~G 77 (587)
+|++.+|+++++++.++..++++|++++ +...++++. .+..++++|++++.|+.+++ ++|+|+|+ +++++|
T Consensus 78 ~~~~~l~~~~~~~~~la~~gv~~t~~~~g~~~~~l~g~------~~~~alllgai~s~Td~a~v~~iL~~~~l~l~~~v~ 151 (562)
T PRK05326 78 TRWSSFRPALGPALSLATLGVLITAGLTGLFAHWLLGL------DWLEGLLLGAIVGSTDAAAVFSLLRGKGLNLKERVA 151 (562)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------CHHHHHHHhhhhccCchHHHHHHHhccCCCcchhHH
Confidence 6889999999999999999999999884 444444443 24788999999999999999 99999996 899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---h-c--C-------------------hhHHHHHHHHHcCCCCcchhHHHHH-H
Q 043315 78 QLAISCAILHKTIGWLSVALTSAII---K-S--D-------------------KGPAVCWIIKINPEGKPVKEIYVLA-I 131 (587)
Q Consensus 78 rlals~avi~Di~~~ill~i~~~~~---~-s--~-------------------~rp~~~~l~~r~~~g~~~~e~~i~~-i 131 (587)
+++.+.+.+||.++++++.++.... . + + .++++.|+++|.... .++.+..+ +
T Consensus 152 ~~l~~eS~~nD~~ai~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~g~l~~~l~~~~~~~--~~~~~~i~~l 229 (562)
T PRK05326 152 STLEIESGSNDPMAVFLTITLIELITGGETGLSWGFLLLFLQQFGLGALIGLLGGWLLVQLLNRIALP--AEGLYPILVL 229 (562)
T ss_pred hHhhhhhhcccHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--hhhHHHHHHH
Confidence 9999999999999998877665433 1 0 0 566778888886321 12334433 3
Q ss_pred -HHHHHHHHHHHhChhHHHHHHHhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHH
Q 043315 132 -GALVMGFLSDAIGTTYLLGALLMGLIIPPGPPLGIAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQNGSRLISFEIII 210 (587)
Q Consensus 132 -~~~~~a~lae~~G~~~ilGAFlaGL~lp~~~p~~~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~~~~~~~~~~l~ 210 (587)
+++++++++|.+|.|.++|+|++|+++++.++..+.-.+++.....+++.|+||+.+|+++|++.+.+..+.. .++.+
T Consensus 230 ~~~l~~~~~a~~lg~Sg~la~~iaGl~l~n~~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~~~~~~~-l~i~~ 308 (562)
T PRK05326 230 AGALLIFALTAALGGSGFLAVYLAGLVLGNRPIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLDIALPA-LLLAL 308 (562)
T ss_pred HHHHHHHHHHHHHCCcHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHH
Confidence 8888889999999999999999999999876555555566666568899999999999999998775433332 33334
Q ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhhhhhHHHHHHHHhhhcCCCC-HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043315 211 GASYLGKFVGSLLIWVFIKASIPNAVIFSCILSLKGIMDLIFILRWRIRKLID-KDTFTLAMLTHTAVTAVRTPLISLYY 289 (587)
Q Consensus 211 ~~a~~~K~l~~~l~~~~~~~~~~~a~~lglll~~kG~~~li~~~i~~~~gli~-~~~f~~lvl~~lvtt~i~~plv~~ly 289 (587)
++.+++|+++++++.+.+++++||+..+|+. ..||+++++++.+++..|+.+ +..|++..+++++|+++.++.++.+.
T Consensus 309 ~l~~vaR~l~v~l~~~~~~~~~~e~~~i~~~-g~RG~v~i~lA~~~~~~~~~~~~~~~~~~~~vvl~S~~i~g~tl~~~a 387 (562)
T PRK05326 309 FLILVARPLAVFLSLLPFRFNLREKLFISWV-GLRGAVPIVLATFPMMAGLPNAQLIFNVVFFVVLVSLLLQGTTLPWAA 387 (562)
T ss_pred HHHHHHHHHHHHHHHccCCCCHhhhheeeee-cchhHHHHHHHHHHHHcCCCchhhhhhhhheeeHHHHHHHHhhHHHHH
Confidence 5667899999999999999999999999995 799999999999999999986 56788888999999999998888877
Q ss_pred cc
Q 043315 290 TP 291 (587)
Q Consensus 290 ~p 291 (587)
|.
T Consensus 388 ~~ 389 (562)
T PRK05326 388 RK 389 (562)
T ss_pred HH
Confidence 53
No 8
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=99.94 E-value=5.3e-29 Score=266.57 Aligned_cols=281 Identities=24% Similarity=0.386 Sum_probs=67.1
Q ss_pred CCchHHHHhhhhHHHHHHHHHHHHHHH-HHHHHHH---HHhhcCCCCCChHHHHHHHHHHHhhHHHH-HHHhhccccCCc
Q 043315 1 MDTTRILQVAKNALSVGMPCFLLSFNF-TISLTLV---LRENIPGMVGGSFPFLLSMVLSLNYFPVV-HALSELNLLTSD 75 (587)
Q Consensus 1 mD~~~l~~~~~~a~~ig~~~~~ip~~~-g~~~~~~---l~~~~~~~~~~~~~l~lg~~ls~Ts~pVv-~iL~el~ll~s~ 75 (587)
+|.+.+||++++++..++.++++|+++ |+.+.++ .+. .+..++++|.+++.||.+++ ++++|.+..+++
T Consensus 67 ~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~ 140 (380)
T PF00999_consen 67 LDIKELRRNWRRALALGLVGFLLPFILVGFLLSFFLFILGL------SWAEALLLGAILSATSPAIVSPVLKELGLLPSR 140 (380)
T ss_dssp GGGG-------------------------------------------------TTHHHHTT--HHHHHHHH-HHHT-SST
T ss_pred hcccccccccccccccccceeeehhhHHHHHHHHhhccchh------hhHHHhhhHHhhhcccccchhhhhhhhhccccc
Confidence 588999999999999999999999999 7777753 222 24678999999999999999 999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh-hc-----C---------------hhHHHHHHHHHcCCC-CcchhHHHHHH--
Q 043315 76 LSQLAISCAILHKTIGWLSVALTSAII-KS-----D---------------KGPAVCWIIKINPEG-KPVKEIYVLAI-- 131 (587)
Q Consensus 76 ~Grlals~avi~Di~~~ill~i~~~~~-~s-----~---------------~rp~~~~l~~r~~~g-~~~~e~~i~~i-- 131 (587)
.++++++.++++|+++++++.+..... ++ + ......|+.++..+. ++.++.++..+
T Consensus 141 ~~~~~~~~~~i~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 220 (380)
T PF00999_consen 141 LGRLLLSESVINDIIAIILLSILISLAQASGQSSLGQLLLSFLWIILIGIVIGLLFGWLLRRLIRRASPSSEIFILLVLA 220 (380)
T ss_dssp THHHHTTTTTTTTTTTTTTT------------------------------------------------------------
T ss_pred ccchhhhhchhhccchhhhhhhhhhhhcccccccccchhcchhhhhhhheeeecccchHHHHhhhhccccchhhHHHHHH
Confidence 999999999999999998888766654 11 0 333444444443222 13344444433
Q ss_pred HHHHHHHHHHHhChhHHHHHHHhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccc--cchhHHHHHHH
Q 043315 132 GALVMGFLSDAIGTTYLLGALLMGLIIPPGPPLGIAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQ--NGSRLISFEII 209 (587)
Q Consensus 132 ~~~~~a~lae~~G~~~ilGAFlaGL~lp~~~p~~~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~--~~~~~~~~~~l 209 (587)
+++.+++++|.+|.|+++|+|++|+++++. +.++++.||++++.+++|.|+||+.+|+++|++.+. ...+.. .+.+
T Consensus 221 ~~~~~~~~a~~~g~s~~l~af~~Gl~~~~~-~~~~~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~~-~~~~ 298 (380)
T PF00999_consen 221 LILLLYGLAEILGLSGILGAFIAGLILSNS-PFAERLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVIIL-VLLL 298 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhhhccccccccccccceeeeeehccccc-cccchhhhcccchhhHHHhhHHhhhhcccccccccccchhhhhh-HHHH
Confidence 888889999999999999999999999965 778889999999988999999999999999998884 334554 5566
Q ss_pred HHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043315 210 IGASYLGKFVGSLLIWVFIKASIPNAVIFSCILSLKGIMDLIFILRWRIRKLIDKDTFTLAMLTHTAVTAVRTPLISLYY 289 (587)
Q Consensus 210 ~~~a~~~K~l~~~l~~~~~~~~~~~a~~lglll~~kG~~~li~~~i~~~~gli~~~~f~~lvl~~lvtt~i~~plv~~ly 289 (587)
.+..+++|++++++.+++.|++++|+..+|+.|++||+++++++..+.+.|.++++.+++++.++++|+.+.|+.++.+.
T Consensus 299 ~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~la~~~~~~~~~~~~~~~~~~~~vl~t~ii~~~~~~~l~ 378 (380)
T PF00999_consen 299 LIAILLGKFIGVYLASRLFGIPWKEALFIGLGMLPRGEVSLALALIALNLGIISEQMFTIIIAAVLLTIIIAGIILSPLL 378 (380)
T ss_dssp ------------------------HHHHTTTTSS--HHHHHHHHHHHHH-------------------------------
T ss_pred HHHHHHhhhceeehhhhhcccccchhHHHHHhhcCccHHHHHHHHHHHhcCCCCHHHHHHheeeeeeHHHHHHHHHHHHh
Confidence 66667899999999999999999999999999999999999999999999999999999999999999999998888754
No 9
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=99.92 E-value=1.5e-23 Score=214.94 Aligned_cols=184 Identities=20% Similarity=0.319 Sum_probs=159.5
Q ss_pred CCchHHHHhhhhHHHHHHHHHHHH-HHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHhhHHHH-HHHhhccccCCchHH
Q 043315 1 MDTTRILQVAKNALSVGMPCFLLS-FNFTISLTLVLRENIPGMVGGSFPFLLSMVLSLNYFPVV-HALSELNLLTSDLSQ 78 (587)
Q Consensus 1 mD~~~l~~~~~~a~~ig~~~~~ip-~~~g~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts~pVv-~iL~el~ll~s~~Gr 78 (587)
+|++.+||++|+++.+++.++++| +++|+.++++++.. +..++++|++++.||+|++ ++++|+|+++++.||
T Consensus 62 ~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~ 135 (273)
T TIGR00932 62 LDLERLWKLRKAAFGVGVLQVLVPGVLLGLLLGHLLGLA------LGAAVVIGIILALSSTAVVVQVLKERGLLKTPFGQ 135 (273)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------HHHHHHHHHHHHHhHHHHHHHHHHHcCcccChHHH
Confidence 689999999999999999999999 77788777777542 3689999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh----c-----C---------------hhHHHHHHHHHcCCCCcchhHHHHHH--H
Q 043315 79 LAISCAILHKTIGWLSVALTSAIIK----S-----D---------------KGPAVCWIIKINPEGKPVKEIYVLAI--G 132 (587)
Q Consensus 79 lals~avi~Di~~~ill~i~~~~~~----s-----~---------------~rp~~~~l~~r~~~g~~~~e~~i~~i--~ 132 (587)
++++++++||+++|+++++.....+ + + .++...|+.|+.+++++ .|.++... +
T Consensus 136 l~l~~~~~~D~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~ 214 (273)
T TIGR00932 136 TVLGILLFQDIAVVPLLALLPLLATSASTEHVALALLLLKVFLAFLLLVLLGRWLLRPVLRLTAELRP-SELFTAGSLLL 214 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHH
Confidence 9999999999999999888765541 1 0 56777888888766543 35555444 7
Q ss_pred HHHHHHHHHHhChhHHHHHHHhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhccccc
Q 043315 133 ALVMGFLSDAIGTTYLLGALLMGLIIPPGPPLGIAIIERFELVIFHFFLPFFYIRIGQYTN 193 (587)
Q Consensus 133 ~~~~a~lae~~G~~~ilGAFlaGL~lp~~~p~~~~l~ekl~~~~~~~flPlFF~~~Gl~~d 193 (587)
++++++++|.+|+|+++|||++|+++|+. +.++++.++++++. ++|.|+||+++|+++|
T Consensus 215 ~~~~~~la~~~g~s~~lgaf~aGl~~~~~-~~~~~l~~~l~~~~-~~f~plFF~~~G~~~~ 273 (273)
T TIGR00932 215 MFGSAYFADLLGLSMALGAFLAGVVLSES-EYRHKLESDLEPIG-GVLLPLFFISVGMSVD 273 (273)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHcCC-chHHHHHHHHHhHH-HHHHHHHHHHhCccCC
Confidence 88889999999999999999999999997 56888999999998 9999999999999987
No 10
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=99.91 E-value=2.5e-23 Score=205.97 Aligned_cols=275 Identities=19% Similarity=0.247 Sum_probs=220.4
Q ss_pred chHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHhhHHHH-HHHhhccccCCchHHHHH
Q 043315 3 TTRILQVAKNALSVGMPCFLLSFNFTISLTLVLRENIPGMVGGSFPFLLSMVLSLNYFPVV-HALSELNLLTSDLSQLAI 81 (587)
Q Consensus 3 ~~~l~~~~~~a~~ig~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts~pVv-~iL~el~ll~s~~Grlal 81 (587)
++++...+.-++--++.++.+-...|.++++.+++.+ ...+..|.++|..|+.|+ |-|+|.++++|+.||+++
T Consensus 78 lkdLLavk~iAipgAl~qia~at~lg~gL~~~lgws~------~~glvfGlaLS~aSTVvllraLqEr~lidt~rG~iAi 151 (408)
T COG4651 78 LKDLLAVKAIAIPGALAQIALATLLGMGLSSLLGWSF------GTGIVFGLALSVASTVVLLRALEERQLIDTQRGRIAI 151 (408)
T ss_pred HHHHhhHHHHhcchHHHHHHHHHHHHhHHHHHcCCCc------ccceeeeehhhhHHHHHHHHHHHHhccccccCceEEE
Confidence 3445554455555667777777788888888888765 356789999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh----c----C-----------------------hhHHHHHHHHHcCC-CCcchhHHHH
Q 043315 82 SCAILHKTIGWLSVALTSAIIK----S----D-----------------------KGPAVCWIIKINPE-GKPVKEIYVL 129 (587)
Q Consensus 82 s~avi~Di~~~ill~i~~~~~~----s----~-----------------------~rp~~~~l~~r~~~-g~~~~e~~i~ 129 (587)
+..+++|+...+.+....+..+ . + .|.+.+|+..+... | .+|.+..
T Consensus 152 GwLiveDl~mVl~Lvllpa~a~~~g~~~~~~~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~le~~a~tG--srElf~L 229 (408)
T COG4651 152 GWLIVEDLAMVLALVLLPALAGVLGQGDVGFATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVAATG--SRELFTL 229 (408)
T ss_pred eehhHHHHHHHHHHHHhHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--cHHHHHH
Confidence 9999999999988887766541 0 0 67788888887532 3 4577655
Q ss_pred HH--HHHHHHHH-HHHhChhHHHHHHHhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHH
Q 043315 130 AI--GALVMGFL-SDAIGTTYLLGALLMGLIIPPGPPLGIAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQNGSRLISF 206 (587)
Q Consensus 130 ~i--~~~~~a~l-ae~~G~~~ilGAFlaGL~lp~~~p~~~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~~~~~~~~ 206 (587)
.+ ..++.++- ++.+|+++.+|||++|+++.+. .+.++..|..-++ ++-|.-+||+++||..|...+.+..+. +
T Consensus 230 ~vla~ALgVa~Ga~~LfgvsfaLGAffaGMvL~es-elshraa~~slpL-rdaFaVlFFvsVGmlf~P~~l~~~pl~--v 305 (408)
T COG4651 230 AVLAIALGVAFGAAELFGVSFALGAFFAGMVLAES-ELSHRAAEDSLPL-RDAFAVLFFVSVGMLFDPMILIQQPLA--V 305 (408)
T ss_pred HHHHHHHHHhhccceeeccchhHHHHHHHHHhcch-hhhHHHHHhccCH-HHHHHHHHHHHhhhhcCcHHhhcchHH--H
Confidence 55 66666664 5899999999999999999998 7888888888776 899999999999999999877655554 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 043315 207 EIIIGASYLGKFVGSLLIWVFIKASIPNAVIFSCILSLKGIMDLIFILRWRIRKLIDKDTFTLAMLTHTAVTAVRTPLIS 286 (587)
Q Consensus 207 ~~l~~~a~~~K~l~~~l~~~~~~~~~~~a~~lglll~~kG~~~li~~~i~~~~gli~~~~f~~lvl~~lvtt~i~~plv~ 286 (587)
+..+.+...+|-+.++...+.||.|.|.++.++..+.+.|||.++++..|.+.+++++.--...+...++ +++..|+..
T Consensus 306 latllii~~gKs~aaf~ivr~Fg~~~~TaLtis~SLaqigEFsfIlaGLgi~l~llp~~gr~Lvlagail-sIl~nPllf 384 (408)
T COG4651 306 LATLLIILFGKSVAAFFIVRAFGHPVRTALTISASLAQIGEFSFILAGLGIKLNLLPEAGRDLVLAGAIL-SILLNPLLF 384 (408)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhCCcchHHHHHHHHHHhhhhHHHHHHHHhhhhccCcHHHHHHHHHHHHH-HHHHhHHHH
Confidence 4445555689999999999999999999999999999999999999999999999996655555444444 555666655
Q ss_pred Hhcc
Q 043315 287 LYYT 290 (587)
Q Consensus 287 ~ly~ 290 (587)
...+
T Consensus 385 ~~~d 388 (408)
T COG4651 385 ALLD 388 (408)
T ss_pred HHHH
Confidence 5443
No 11
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.64 E-value=1.7e-13 Score=145.94 Aligned_cols=260 Identities=12% Similarity=0.101 Sum_probs=174.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHhhHHHH-HHHhhccc-cCCchHHHHHHHHHHHHHHH
Q 043315 14 LSVGMPCFLLSFNFTISLTLVLRENIPGMVGGSFPFLLSMVLSLNYFPVV-HALSELNL-LTSDLSQLAISCAILHKTIG 91 (587)
Q Consensus 14 ~~ig~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts~pVv-~iL~el~l-l~s~~Grlals~avi~Di~~ 91 (587)
+.-++.|+++|.++-+. +.+.. ....-.+|+ -+.|+.+.. .+|..+|- .++.++...++.|++||+.+
T Consensus 101 ~~aAlGGm~vPaliy~~----~n~~~-----~~~~~GW~I-p~ATDIAFalgvLallG~rvp~~l~~FLlaLAIvDDl~A 170 (423)
T PRK14853 101 VAAALGGMIVPALIYVA----VNLAG-----GGALRGWAI-PTATDIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLA 170 (423)
T ss_pred HHHHHHhHHHHHHHHHH----HhCCc-----hhhhhhhhh-hhhhHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHH
Confidence 46789999999854333 22111 011222332 345778888 99999885 49999999999999999999
Q ss_pred HHHHHHHHHHhhc--C-----hhHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHhChhHHHHHHHhhhhcCCCC--
Q 043315 92 WLSVALTSAIIKS--D-----KGPAVCWIIKINPEGKPVKEIYVLAIGALVMGFLSDAIGTTYLLGALLMGLIIPPGP-- 162 (587)
Q Consensus 92 ~ill~i~~~~~~s--~-----~rp~~~~l~~r~~~g~~~~e~~i~~i~~~~~a~lae~~G~~~ilGAFlaGL~lp~~~-- 162 (587)
+++++++..-.-+ + .--.+.|+.+|.+ +++.+.+.++.+++.+..+..|+|+.+|+|++|+++|..+
T Consensus 171 IiVIAlfYt~~i~~~~L~~a~~~~~~l~~l~~~~----V~~~~~Y~ilg~~lW~~~~~sGiHatiAGvllGl~IP~~~~~ 246 (423)
T PRK14853 171 ITVIAVFYTSELNLEALLLALVPLALFWLLVQKR----VRKWWLLLPLGVATWILVHESGVHATVAGVLLGFAVPVLRRE 246 (423)
T ss_pred HHhhheccCCCCCHHHHHHHHHHHHHHHHHHHcC----CchhhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhccccccc
Confidence 9999887632101 1 3334567777642 4455666665567777899999999999999999999521
Q ss_pred ---------CchhHHHHHHHHHHHHHHHHHH-HHHhcccccc-cccccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHh--
Q 043315 163 ---------PLGIAIIERFELVIFHFFLPFF-YIRIGQYTNL-SSIQNG-SRLISFEIIIGASYLGKFVGSLLIWVFI-- 228 (587)
Q Consensus 163 ---------p~~~~l~ekl~~~~~~~flPlF-F~~~Gl~~dl-~~l~~~-~~~~~~~~l~~~a~~~K~l~~~l~~~~~-- 228 (587)
+..+++++++++++..+++|+| |+.+|+++|. ..+.+. .-.. ...+++..++||.+|.+..++..
T Consensus 247 ~~~~~~~~~~p~~rle~~L~p~V~~~ILPLFAFANaGV~l~~~~~~~~~~~~pv-~lgI~lgL~vGK~lGI~~~~~l~~k 325 (423)
T PRK14853 247 GEEGPEAGPGLAEHLEHRLRPLSAGVAVPVFAFFSAGVAIGGLSGLGAALTDPI-VLGVVLGLVVGKPIGIFGTTYLLTK 325 (423)
T ss_pred ccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhheecCchhHHHHhhchH-HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2357899999999999999999 9999999986 434111 1113 45677778899999987766543
Q ss_pred --------CCChHHHHHHHHHhhhhhhHHHHHHHHhhh-cC-CCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043315 229 --------KASIPNAVIFSCILSLKGIMDLIFILRWRI-RK-LIDKDTFTLAMLTHTAVTAVRTPLISLYY 289 (587)
Q Consensus 229 --------~~~~~~a~~lglll~~kG~~~li~~~i~~~-~g-li~~~~f~~lvl~~lvtt~i~~plv~~ly 289 (587)
+++|++-..+|++=..-=++.+-+.+.+++ .. .+++.=.. +.+.++++.++.-.+++...
T Consensus 326 ~~~~~lP~~~~~~~l~gv~~L~GIGFTmSlFI~~LAf~~~~~~~~~aKig-il~~S~~s~~~G~~~l~~~~ 395 (423)
T PRK14853 326 FTRASLDDDLTWIDVFGVALLAGIGFTVSLLIGELAFGGGSARDDAVKVG-VLTGSLIAALLASVLLRLRN 395 (423)
T ss_pred hCcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHhc
Confidence 367888888777544333567778888883 22 22222222 33344444444444554433
No 12
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=99.56 E-value=8.1e-13 Score=147.34 Aligned_cols=246 Identities=15% Similarity=0.115 Sum_probs=167.5
Q ss_pred CCchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHhhHHHH-HHHhhccccCCchHHH
Q 043315 1 MDTTRILQVAKNALSVGMPCFLLSFNFTISLTLVLRENIPGMVGGSFPFLLSMVLSLNYFPVV-HALSELNLLTSDLSQL 79 (587)
Q Consensus 1 mD~~~l~~~~~~a~~ig~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts~pVv-~iL~el~ll~s~~Grl 79 (587)
+|.+.+||+++..+.+++.++++|++++..+.+++.. + .+..++++|+++|.|+.+++ .+++|.+ +++++.++
T Consensus 67 ~~~~~l~~~~~~i~~la~~~vlit~~~v~~~~~~~~~-l----~~~~alllGails~TDpvav~~il~~~~-~p~rl~~i 140 (525)
T TIGR00831 67 TDLRELRENFRPIALIAFLLVVVTTVVVGFSLNWILG-I----PLALALILGAVLSPTDAVAVLGTFKSIR-APKKLSIL 140 (525)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-c----cHHHHHHHHHHhCCCCHHHHHHHHhcCC-CCHHHHHH
Confidence 5789999999999999999999999986666654322 1 34789999999999999999 9999976 57889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh--c----C-------------------hhHHHHHHHHHcCCCCcchhHHHHHHHHH
Q 043315 80 AISCAILHKTIGWLSVALTSAIIK--S----D-------------------KGPAVCWIIKINPEGKPVKEIYVLAIGAL 134 (587)
Q Consensus 80 als~avi~Di~~~ill~i~~~~~~--s----~-------------------~rp~~~~l~~r~~~g~~~~e~~i~~i~~~ 134 (587)
..+.+++||..+++++.+...... + + +..+..|+.++..+. +..+..+.+.+.+
T Consensus 141 l~gESllND~~alvlf~~~~~~~~~~~~~~~~~~~~~f~~~~~~gi~vG~~~g~~~~~l~~~~~~~-~~~~~~l~l~~~~ 219 (525)
T TIGR00831 141 LEGESLLNDGAALVVFAIAVAVALGKGVFDPLNAALDFAVVCVGGIAAGLAVGYLAYRLLRAKIDD-PLVEIALTILAPF 219 (525)
T ss_pred HhhhhhhcchHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHH
Confidence 999999999999999887665441 1 0 223344555543322 2222222222778
Q ss_pred HHHHHHHHhChhHHHHHHHhhhhcCCCCCc-h--hH---HHHHHHHHHHHHHHHHHHHHhccccccccc--cc-c--hhH
Q 043315 135 VMGFLSDAIGTTYLLGALLMGLIIPPGPPL-G--IA---IIERFELVIFHFFLPFFYIRIGQYTNLSSI--QN-G--SRL 203 (587)
Q Consensus 135 ~~a~lae~~G~~~ilGAFlaGL~lp~~~p~-~--~~---l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l--~~-~--~~~ 203 (587)
++.+++|.+|.|.++++|++|+++++..+. . .+ -.+.+......++-+++|+.+|+++..... .. . .+.
T Consensus 220 ~~y~lAe~lg~SgilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~~~~~~~~~~~~~~~ 299 (525)
T TIGR00831 220 AGFLLAERFHFSGVIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPGTIFSAWKEILVAPA 299 (525)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhH
Confidence 888999999999999999999999975333 1 11 222343445678889999999999874211 11 0 010
Q ss_pred --HH-----HHHHHHHHHHHHHHHHHHH--HHH-----hCCChHHHHHHHHHhhhhhhHHHHHHH
Q 043315 204 --IS-----FEIIIGASYLGKFVGSLLI--WVF-----IKASIPNAVIFSCILSLKGIMDLIFIL 254 (587)
Q Consensus 204 --~~-----~~~l~~~a~~~K~l~~~l~--~~~-----~~~~~~~a~~lglll~~kG~~~li~~~ 254 (587)
.. .+++.......+++..+.. .++ .++++|+.+.+++. ..||.+.++.+.
T Consensus 300 ~~~~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~r~~~v~~w~-G~RG~vslA~al 363 (525)
T TIGR00831 300 AVILALFTNAFVIYPVMTYVRFLWTMKPFSNRFLKKKPMEFGTRWKHVVSWA-GLRGAIPLALAL 363 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCChhhHHHheec-cchHHHHHHHHH
Confidence 00 1111112233444332221 111 24778999998885 789999998775
No 13
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=99.33 E-value=4.1e-10 Score=127.76 Aligned_cols=254 Identities=11% Similarity=0.088 Sum_probs=176.9
Q ss_pred CCchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHhhHHHH-HHHh---hccccCCch
Q 043315 1 MDTTRILQVAKNALSVGMPCFLLSFNFTISLTLVLRENIPGMVGGSFPFLLSMVLSLNYFPVV-HALS---ELNLLTSDL 76 (587)
Q Consensus 1 mD~~~l~~~~~~a~~ig~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts~pVv-~iL~---el~ll~s~~ 76 (587)
+|.+.+++.++..+.+.+.++.+..+++.++++++...+ .+..++++|++++.|-.... .+++ ..+ +..++
T Consensus 90 L~~~~Lrr~wrsV~rLl~~~M~lT~livAL~a~~Li~GL----~~~~ALLLGAILAPTDPVLAssV~kg~~~~r-vP~rL 164 (810)
T TIGR00844 90 LPRKYMLKHWVSVTMLLVPVMTSGWLVIALFVWILVPGL----NFPASLLMGACITATDPVLAQSVVSGTFAQK-VPGHL 164 (810)
T ss_pred CCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC----CHHHHHHHHhhhcCCcHHHHHHHHhcccccc-CChHH
Confidence 467889999999999999999999888888777663212 24789999999999986555 6665 222 56778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--h--c------C------------------hhHHHHHHHHHcCCCCc-chhHH
Q 043315 77 SQLAISCAILHKTIGWLSVALTSAII--K--S------D------------------KGPAVCWIIKINPEGKP-VKEIY 127 (587)
Q Consensus 77 Grlals~avi~Di~~~ill~i~~~~~--~--s------~------------------~rp~~~~l~~r~~~g~~-~~e~~ 127 (587)
..+.-+=+.+||-+++.++.+...+. . + | +..+..|++++..+... ..+.+
T Consensus 165 R~lL~~ESGlNDGlAfpfv~LaL~ll~~~~~g~~~~~~w~l~~~L~~i~~GiliG~vvG~l~~~Ll~~l~rr~~i~~esf 244 (810)
T TIGR00844 165 RNLLSCESGCNDGLAFPFVFLSMDLLLYPGRGGEIVKDWICVTILWECIFGSILGCIIGYCGRKAIRFAEGKNIIDRESF 244 (810)
T ss_pred HhHHhhhhhcccHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHH
Confidence 88888889999988876553332211 0 0 1 33344455543321111 11223
Q ss_pred H-HHH-HHHHHHHHHHHhChhHHHHHHHhhhhcCCCCCchhH-HHHHHHHHHHHHHHHHHHHHhccccccccccc-----
Q 043315 128 V-LAI-GALVMGFLSDAIGTTYLLGALLMGLIIPPGPPLGIA-IIERFELVIFHFFLPFFYIRIGQYTNLSSIQN----- 199 (587)
Q Consensus 128 i-~~i-~~~~~a~lae~~G~~~ilGAFlaGL~lp~~~p~~~~-l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~----- 199 (587)
+ ..+ +++++..+++.+|.+..+.+|++|+++.+....... -...+..+...++..++|+..|+.+....+..
T Consensus 245 la~~LaLAli~~gla~lLggSGfLAVFVAGl~~gn~~~~~~~~~~~~f~e~ie~LLn~~lFVlLGa~L~~~~l~~~~l~~ 324 (810)
T TIGR00844 245 LAFYLILALTCAGFGSMLGVDDLLVSFFAGTAFAWDGWFAQKTHESNVSNVIDVLLNYAYFVYLGSILPWKDFNNGDIGL 324 (810)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhcccchhhhHHHhhHHHHHHHHHHHHHHHHHHHhhCHhhcccchhhH
Confidence 3 233 777888899999999999999999999985332222 12235555567889999999999998766642
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHh--CCChHHHHHHHHHhhhhhhHHHHHHHHhhhcCC
Q 043315 200 GSRLISFEIIIGASYLGKFVGSLLIWVFI--KASIPNAVIFSCILSLKGIMDLIFILRWRIRKL 261 (587)
Q Consensus 200 ~~~~~~~~~l~~~a~~~K~l~~~l~~~~~--~~~~~~a~~lglll~~kG~~~li~~~i~~~~gl 261 (587)
..|.. +++.+++.++.+..+.++...+. ..+++|.+.+|. ..+||...+..+.++++.+.
T Consensus 325 ~~w~~-ilLaL~LifVrRPpaVlll~~li~~~~s~rErlFigW-FGpRGIGSIyyl~~A~~~~~ 386 (810)
T TIGR00844 325 DVWRL-IILSLVVIFLRRIPAVLILKPLIPDIKSWREAMFIGH-FGPIGVGAVFAAILSKSQLE 386 (810)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHhee-eccccHHHHHHHHHHHHhhh
Confidence 23443 44555556677877777654444 368999999998 49999999999999988876
No 14
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=99.29 E-value=8.6e-10 Score=123.55 Aligned_cols=284 Identities=11% Similarity=0.067 Sum_probs=183.9
Q ss_pred CCchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcC---CCCCChHHHHHHHHHHHhhHHHH-HHHhhccccCCch
Q 043315 1 MDTTRILQVAKNALSVGMPCFLLSFNFTISLTLVLRENIP---GMVGGSFPFLLSMVLSLNYFPVV-HALSELNLLTSDL 76 (587)
Q Consensus 1 mD~~~l~~~~~~a~~ig~~~~~ip~~~g~~~~~~l~~~~~---~~~~~~~~l~lg~~ls~Ts~pVv-~iL~el~ll~s~~ 76 (587)
||.+.++++.+..+..|+.|.++..++.....+++..... ..-.+..++.+|+++|.|....+ .++++.+ .+.++
T Consensus 84 l~~~~f~~n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDPVAVlai~~~~~-v~~~L 162 (559)
T TIGR00840 84 MPQRNFFENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPVAVLAVFEEYH-VNEKL 162 (559)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCchHHHHHHHHhcC-CCcch
Confidence 5778999999999999999999988765554444322111 01135789999999999998888 9999988 68999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh--c----C-----------------------hhHHHHHHHHHcCCCCcchhHH
Q 043315 77 SQLAISCAILHKTIGWLSVALTSAIIK--S----D-----------------------KGPAVCWIIKINPEGKPVKEIY 127 (587)
Q Consensus 77 Grlals~avi~Di~~~ill~i~~~~~~--s----~-----------------------~rp~~~~l~~r~~~g~~~~e~~ 127 (587)
-.++.+-+++||..+++++.++..... + + +..+..++.|+....+ .-+..
T Consensus 163 ~~ll~gESllNDavaIVLf~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~GGiliG~v~G~l~~~l~r~~~~~~-~~e~~ 241 (559)
T TIGR00840 163 YIIIFGESLLNDAVTVVLYNTFIKFHKTADEPVTIVDVFEGCASFFVVTCGGLLVGVVFGFLVAFITRFTHHIR-QIEPL 241 (559)
T ss_pred hhheehhhhhhccHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-hhHHH
Confidence 999999999999999998876655431 0 0 2223445556653322 22322
Q ss_pred HHHHHHHHHHHHHHHhChhHHHHHHHhhhhcCCC-----CCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccchh
Q 043315 128 VLAIGALVMGFLSDAIGTTYLLGALLMGLIIPPG-----PPLGIAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQNGSR 202 (587)
Q Consensus 128 i~~i~~~~~a~lae~~G~~~ilGAFlaGL~lp~~-----~p~~~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~~~~ 202 (587)
+.+++.+++..++|.+|.|.++..+++|+++.+. .+..+.-.+.+......++-.+.|+..|+.+-... ....|
T Consensus 242 l~l~~~yl~Y~lAE~l~~SGiLAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~~-~~~~~ 320 (559)
T TIGR00840 242 FVFLISYLSYLFAETLHLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTEN-HEWNW 320 (559)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch-hhHHH
Confidence 2222667777899999999999999999998642 12122222334444466778899999999763221 11134
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------hCCChHHHHHHHHHhhhhhhHHHHHHHHhhhcCCCCHHHHH-HHHH---
Q 043315 203 LISFEIIIGASYLGKFVGSLLIWVF------IKASIPNAVIFSCILSLKGIMDLIFILRWRIRKLIDKDTFT-LAML--- 272 (587)
Q Consensus 203 ~~~~~~l~~~a~~~K~l~~~l~~~~------~~~~~~~a~~lglll~~kG~~~li~~~i~~~~gli~~~~f~-~lvl--- 272 (587)
.. +++.+++.++.+.++.+..... .+++++|.+.++.. ..||.+.++++...-+.+.=..+.+. ....
T Consensus 321 ~~-i~~~l~~~ll~R~l~V~~~~~~~~~~~~~~~~~~e~~il~w~-GlRGaVa~aLAl~l~~~~~~~~~~i~~~t~~VVl 398 (559)
T TIGR00840 321 AF-VVATLSFCVIYRVLGVRTLSWITNEFRPVEIPYKDQLVIFYA-GLRGAVAFALALLLDEKIFPYKFLFVTTTLVVVF 398 (559)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChhhhhheeee-ccccHHHHHHHHhCCCCCcchHHHHHHHHHeeeh
Confidence 33 3444455567788777665433 35789999888773 67999999887644322222222222 2222
Q ss_pred -HHHHHHHHHHHHHHHhc
Q 043315 273 -THTAVTAVRTPLISLYY 289 (587)
Q Consensus 273 -~~lvtt~i~~plv~~ly 289 (587)
++++-....+|+++++.
T Consensus 399 ~TvlvqG~T~~pl~~~L~ 416 (559)
T TIGR00840 399 FTVIFQGGTIKPLVEVLK 416 (559)
T ss_pred HHHHHHHhhHHHHHHHhC
Confidence 22232333467777754
No 15
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=99.29 E-value=4.1e-10 Score=118.16 Aligned_cols=181 Identities=15% Similarity=0.124 Sum_probs=126.2
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhc--C-----hhHHHHHHHHHcCCCCcchhHHHHHH-HHHHHHHHHHHh
Q 043315 72 LTSDLSQLAISCAILHKTIGWLSVALTSAIIKS--D-----KGPAVCWIIKINPEGKPVKEIYVLAI-GALVMGFLSDAI 143 (587)
Q Consensus 72 l~s~~Grlals~avi~Di~~~ill~i~~~~~~s--~-----~rp~~~~l~~r~~~g~~~~e~~i~~i-~~~~~a~lae~~ 143 (587)
....+-...++-|++||+.+++++++...-.-+ + .--...++.+|.. +++...+.+ .+++..++ ...
T Consensus 141 vP~~lr~FLl~LAIvDDlgaI~vIA~FYt~~i~~~~L~~a~~~~~~l~~~~~~~----v~~~~~y~~lgvllW~~~-~~s 215 (373)
T TIGR00773 141 VPLALKIFLLALAIIDDLGAIVIIALFYTNDLSMAALLVAAVAIAVLAVLNRCG----VRRLGPYMLVGVILWFAV-LKS 215 (373)
T ss_pred CCHHHHHHHHHHHHHHHHhhHhheeeecCCCCCHHHHHHHHHHHHHHHHHHHcC----CchhhHHHHHHHHHHHHH-HHc
Confidence 566667788999999999999988876642211 1 3334556666642 334444444 33333333 799
Q ss_pred ChhHHHHHHHhhhhcCCCCCch----hHHHHHHHHHHHHHHHHHH-HHHhcccccccccccchhHHHHHHHHHHHHHHHH
Q 043315 144 GTTYLLGALLMGLIIPPGPPLG----IAIIERFELVIFHFFLPFF-YIRIGQYTNLSSIQNGSRLISFEIIIGASYLGKF 218 (587)
Q Consensus 144 G~~~ilGAFlaGL~lp~~~p~~----~~l~ekl~~~~~~~flPlF-F~~~Gl~~dl~~l~~~~~~~~~~~l~~~a~~~K~ 218 (587)
|+|+.+|+|++|+++|+..+.. +++++.+++.+..+++|+| |+..|.++|...+....... ...+++..++||.
T Consensus 216 GVHatiaGvllGl~iP~~~~~~~~pl~rleh~L~p~v~~lilPlFAFanAGv~l~~~~~~~~~~~v-~lgI~lgLvvGK~ 294 (373)
T TIGR00773 216 GVHATLAGVIIGFFIPLKGKKGESPLKRLEHVLHPWVAYLILPLFAFANAGVSLQGVSLNGLTSML-PLGIILGLLIGKP 294 (373)
T ss_pred CCcHHHHHHHHeeeecccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCeeeecCcchhhcChH-HHHHHHHHHHHHH
Confidence 9999999999999999864433 4566666666889999999 99999999875553322233 5677778899999
Q ss_pred HHHHHHHHHh----------CCChHHHHHHHHHhhhhhhHHHHHHHHhhh
Q 043315 219 VGSLLIWVFI----------KASIPNAVIFSCILSLKGIMDLIFILRWRI 258 (587)
Q Consensus 219 l~~~l~~~~~----------~~~~~~a~~lglll~~kG~~~li~~~i~~~ 258 (587)
+|++..++.. +++|++-..+|++=..-=++++-+.+.+++
T Consensus 295 lGI~~~~~l~~kl~~~~lP~~~~w~~~~gv~~L~GIGFTmSlfI~~LAf~ 344 (373)
T TIGR00773 295 LGIFLFSWIAVKLKLAKLPEGINFKQIFAVGVLCGIGFTMSIFIASLAFG 344 (373)
T ss_pred HHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999887653 367888877777533333567777777774
No 16
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=99.20 E-value=8.8e-09 Score=112.22 Aligned_cols=283 Identities=16% Similarity=0.154 Sum_probs=199.3
Q ss_pred CCchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHhhHHHH-HHHhhccccCCchHHH
Q 043315 1 MDTTRILQVAKNALSVGMPCFLLSFNFTISLTLVLRENIPGMVGGSFPFLLSMVLSLNYFPVV-HALSELNLLTSDLSQL 79 (587)
Q Consensus 1 mD~~~l~~~~~~a~~ig~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts~pVv-~iL~el~ll~s~~Grl 79 (587)
+|.+.++|+.+.....++.+.++..+......+++.... ....++.+|+++|.|.-..+ .+.++ .....++.++
T Consensus 78 l~~~~l~~~~~~I~~La~~~v~it~~~~g~~~~~l~~~i----~~~~a~l~gAilspTDPv~v~~i~~~-~~vp~ri~~i 152 (429)
T COG0025 78 LDLRELRRVWRSILVLALPLVLITALGIGLLAHWLLPGI----PLAAAFLLGAILSPTDPVAVSPIFKR-VRVPKRIRTI 152 (429)
T ss_pred CCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh----hHHHHHHHhHHhcCCCchhhHHHHhc-CCCCHHHHHH
Confidence 578999999999999999999998886666666653211 24688999999999997777 88877 4479999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh--c-----C------------------hhHHHHHHHHHcCC--C-CcchhHHHHHH
Q 043315 80 AISCAILHKTIGWLSVALTSAIIK--S-----D------------------KGPAVCWIIKINPE--G-KPVKEIYVLAI 131 (587)
Q Consensus 80 als~avi~Di~~~ill~i~~~~~~--s-----~------------------~rp~~~~l~~r~~~--g-~~~~e~~i~~i 131 (587)
..+=+++||-.+++++.+...... + + ...+..|+.++..+ . .+..+..+.+.
T Consensus 153 L~gESl~ND~~giv~f~~~l~~~~~~~~~~~~~~~~~fl~~~~~g~~~G~~iG~l~~~l~~~~~~~~~~~~~~~~~i~L~ 232 (429)
T COG0025 153 LEGESLLNDGVGIVLFKVALAALLGTGAFSLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGWTSPLLETLLTLL 232 (429)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHH
Confidence 999999999999999887766541 1 0 23334455555322 1 12222222222
Q ss_pred HHHHHHHHHHHhChhHHHHHHHhhhhcC---C--CCCch-hHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHH
Q 043315 132 GALVMGFLSDAIGTTYLLGALLMGLIIP---P--GPPLG-IAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQNGSRLIS 205 (587)
Q Consensus 132 ~~~~~a~lae~~G~~~ilGAFlaGL~lp---~--~~p~~-~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~~~~~~~ 205 (587)
..+....++|.+|.+.++..+++|+... . ..+.. +...+.+.....-++--+.|+..|.+++...+....++.
T Consensus 233 ~~~~~~~~a~~l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~~~~~~~- 311 (429)
T COG0025 233 LAFAAYLLAEALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLLALGLLG- 311 (429)
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHH-
Confidence 8888889999999999999999998773 1 11212 233333555556778888999999999988765444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhC------CChHHHHHHHHHhhhhhhHHHHHHHHhhhcC------CCCHHHHHHHHHH
Q 043315 206 FEIIIGASYLGKFVGSLLIWVFIK------ASIPNAVIFSCILSLKGIMDLIFILRWRIRK------LIDKDTFTLAMLT 273 (587)
Q Consensus 206 ~~~l~~~a~~~K~l~~~l~~~~~~------~~~~~a~~lglll~~kG~~~li~~~i~~~~g------li~~~~f~~lvl~ 273 (587)
.++.+...++.++++.++..+..+ .++++.+.++.. .+||.+.++.+......- .+-.-+|..++..
T Consensus 312 ~l~~~~~~~v~R~~~V~~~~~~~~~~~~~~~~~~~~~~l~w~-G~RG~vsla~al~~p~~~~~~~~~~i~~i~~~vIl~S 390 (429)
T COG0025 312 LLVALVAVLLARPLWVFLSLKGSNLKLRDPLPWRERLFLSWA-GPRGVVSLALALLIPLELPGPARELILFIVFLVILFS 390 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccCCCCHHHHHHHhhc-ccccHHHHHHHHHchhhccchhhhHHHHHHHHHHHHH
Confidence 677777788999999999887743 789999888886 999999999887654221 1112234444444
Q ss_pred HHHHHHHHHHHHHHhcc
Q 043315 274 HTAVTAVRTPLISLYYT 290 (587)
Q Consensus 274 ~lvtt~i~~plv~~ly~ 290 (587)
.++..+..||+.+++..
T Consensus 391 l~v~g~t~~~l~~~~~~ 407 (429)
T COG0025 391 LLVQGLTLPPLAKKLEV 407 (429)
T ss_pred HHHHhhhHHHHHHHhcc
Confidence 44445555666666543
No 17
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=99.01 E-value=4.2e-09 Score=94.82 Aligned_cols=128 Identities=20% Similarity=0.332 Sum_probs=98.6
Q ss_pred cceeeecCCcccccccccccCCCCCCCCCHHHHHHHHHHhcCCCCCCcEEEEEEeeeccCCCccccccccccccccCCCc
Q 043315 318 RKNLMENTPITQHKIYVENSKSGEKPRPFVHSLITLLKAFNSSEMSPLCACVLHLVELVGRAAPLLVPHNTHKRKIKENS 397 (587)
Q Consensus 318 ril~c~~~~~~~~~v~~~~~~~~~~~~~~v~~li~Ll~~~~~~~~sp~~v~~lhlvel~~r~s~~l~~~~~~~~~~~~~~ 397 (587)
|||+| +.+.+ +...+++....+... ...+++++|+++......+ +.. ......
T Consensus 1 ~ILv~---------vd~s~---------~~~~~l~~a~~la~~--~~~~v~ll~v~~~~~~~~~----~~~---~~~~~~ 53 (132)
T cd01988 1 RILVP---------VANPN---------TARDLLELAAALARA--QNGEIIPLNVIEVPNHSSP----SQL---EVNVQR 53 (132)
T ss_pred CEEEe---------cCCch---------hHHHHHHHHHHHhhc--CCCeEEEEEEEecCCCCCc----chh---HHHHHH
Confidence 68999 99999 999999999998754 4578999999997644322 100 011234
Q ss_pred hhHHHHHHHhhhcCCceEEEEEEEEecCCChHHHHHHHHhhcCCCEEEeccCCCccccc---cchhHHHhhccCCCcEEE
Q 043315 398 TDRIMRAMTKFSKSSQVTIQPFILIAPYKTMYESISKLAQDEFIPFIILPSHQSHKMQQ---GGGFNCKIQNCAPCSVGI 474 (587)
Q Consensus 398 ~~~i~~~f~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~~~~~d---g~~~n~~vl~~apcsVgI 474 (587)
.++.++.+..+....++.+++.+..+ .+..++||+.|+++++|+|++|+|++....+ | +...+|++++||+|.|
T Consensus 54 ~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~lG-s~~~~v~~~~~~pvlv 130 (132)
T cd01988 54 ARKLLRQAERIAASLGVPVHTIIRID--HDIASGILRTAKERQADLIIMGWHGSTSLRDRLFG-GVIDQVLESAPCDVAV 130 (132)
T ss_pred HHHHHHHHHHHhhhcCCceEEEEEec--CCHHHHHHHHHHhcCCCEEEEecCCCCCccceecC-chHHHHHhcCCCCEEE
Confidence 56677777666555667788887776 5789999999999999999999998876522 3 7889999999999887
Q ss_pred E
Q 043315 475 Y 475 (587)
Q Consensus 475 l 475 (587)
+
T Consensus 131 v 131 (132)
T cd01988 131 V 131 (132)
T ss_pred e
Confidence 5
No 18
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=98.55 E-value=2e-06 Score=90.58 Aligned_cols=273 Identities=15% Similarity=0.179 Sum_probs=188.8
Q ss_pred CchHHHHhhhhHHHHHHHHHHHHHHH-HHHHHHHHHhhcCCCCCChHHHHHHHHHHHhhHHHH-HHHhhccccCCchHHH
Q 043315 2 DTTRILQVAKNALSVGMPCFLLSFNF-TISLTLVLRENIPGMVGGSFPFLLSMVLSLNYFPVV-HALSELNLLTSDLSQL 79 (587)
Q Consensus 2 D~~~l~~~~~~a~~ig~~~~~ip~~~-g~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts~pVv-~iL~el~ll~s~~Grl 79 (587)
..+.+|...++++..+..|++++-.+ |.+..|.++- .|.+++.+|.+...|--+-+ .+|.+.+ +|.+++.+
T Consensus 80 ~lss~r~a~~palsLATlGVl~Ts~Ltg~aA~~ll~l------~wle~~LiGAiVgSTDAAAVF~lL~~~n-l~erv~st 152 (574)
T COG3263 80 QLSSFRVAAGPALSLATLGVLITSGLTGVAAAYLLNL------DWLEGLLIGAIVGSTDAAAVFSLLGGKN-LNERVAST 152 (574)
T ss_pred cHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcc------HHHHHHHHHHhhccccHHHHHHHHccCC-hhhhhhhh
Confidence 45678888899999999999987766 4444444433 25899999999999998889 9998777 46666554
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHhh--c----------------------ChhHHHHHHHHHcCCCCcchhHH-HHHH-H
Q 043315 80 AISCAILHKTIGWLSV-ALTSAIIK--S----------------------DKGPAVCWIIKINPEGKPVKEIY-VLAI-G 132 (587)
Q Consensus 80 als~avi~Di~~~ill-~i~~~~~~--s----------------------~~rp~~~~l~~r~~~g~~~~e~~-i~~i-~ 132 (587)
.=--+=-||=.+.++. +++..... + +...+..|+++|+.-. +..| ++.+ .
T Consensus 153 LEiESGtNDPmAvfLTitlieli~~get~l~~~~ll~f~~q~glG~l~G~~gg~l~~~~Inr~nLd---~GL~pil~la~ 229 (574)
T COG3263 153 LEIESGSNDPMAVFLTITLIELIAGGETNLSWGFLLGFLQQFGLGLLLGLGGGKLLLQLINRINLD---SGLYPILALAG 229 (574)
T ss_pred EEeecCCCCceeeehhHHHHHHHhccccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccc---cchhHHHHHHH
Confidence 3333333443333332 22111111 0 1456677888886211 1223 4444 6
Q ss_pred HHHHHHHHHHhChhHHHHHHHhhhhcCCCCC-chhHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHH
Q 043315 133 ALVMGFLSDAIGTTYLLGALLMGLIIPPGPP-LGIAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQNGSRLISFEIIIG 211 (587)
Q Consensus 133 ~~~~a~lae~~G~~~ilGAFlaGL~lp~~~p-~~~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~~~~~~~~~~l~~ 211 (587)
.++.-.+++.+|-|.++.-+++|+.+.+.+- .++.+.+-.+.+ .++.--+.|...|+.++.+.+....... +++.+.
T Consensus 230 ~Ll~fs~t~aiGGsG~LaVYl~Gll~GN~~i~~r~~I~~f~dG~-twlaQI~MFlvLGLLvtPsql~~iavPa-ilL~l~ 307 (574)
T COG3263 230 GLLIFSLTGAIGGSGILAVYLAGLLLGNRPIRARHGILRFFDGL-AWLAQILMFLVLGLLVTPSQLLPIAIPA-ILLSLW 307 (574)
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHhCCCcchhHHHHHHHhccH-HHHHHHHHHHHHHHhcCHhhhhHhhHHH-HHHHHH
Confidence 6666678999999999999999999999842 234566666666 6777788889999999998886544443 555666
Q ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhhhhhHHHHHHHHhhhcCCCCHHH-HHHHHHHHHHHHHHHHHHHHH
Q 043315 212 ASYLGKFVGSLLIWVFIKASIPNAVIFSCILSLKGIMDLIFILRWRIRKLIDKDT-FTLAMLTHTAVTAVRTPLISL 287 (587)
Q Consensus 212 ~a~~~K~l~~~l~~~~~~~~~~~a~~lglll~~kG~~~li~~~i~~~~gli~~~~-f~~lvl~~lvtt~i~~plv~~ 287 (587)
..++.+.++.|+...-+++++||...++.. .-||.+.++++..-.-.|+=+.+. |++.-+.++++-.+-...+.+
T Consensus 308 mifvaRP~aV~l~l~Pfrf~~~Ek~fvSWv-GLRGAv~IilAifpm~aglena~l~FNvAF~VVLvSlliQG~tl~~ 383 (574)
T COG3263 308 MIFVARPLAVFLGLIPFRFNRREKLFVSWV-GLRGAVPIILAIFPMMAGLENARLFFNVAFFVVLVSLLIQGSTLPW 383 (574)
T ss_pred HHHHHhHHHHHHhhcccccCccchheeehh-hcccchhhhHhhhHHhcCCccceEEeehhHHHHHHHHHHccCcchH
Confidence 678889999999988889999999887774 779999999999888888766554 455444455544444333333
No 19
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=98.35 E-value=5.1e-05 Score=80.32 Aligned_cols=229 Identities=15% Similarity=0.046 Sum_probs=137.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHH-hhHHHH--HHHhhccccCCchHHHHHHHHHHHHH
Q 043315 13 ALSVGMPCFLLSFNFTISLTLVLRENIPGMVGGSFPFLLSMVLSL-NYFPVV--HALSELNLLTSDLSQLAISCAILHKT 89 (587)
Q Consensus 13 a~~ig~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~l~lg~~ls~-Ts~pVv--~iL~el~ll~s~~Grlals~avi~Di 89 (587)
.+.-+++|+++|.++=+. +....+ ...--+|+-++. ++|.+- .++. +-....+-...++-|++||+
T Consensus 97 Pi~AAlGGmivPAlIy~~----~n~g~~-----~~~~GWgIPmATDIAFAlgvL~llG--~rvP~~Lr~FLlaLAIvDDl 165 (389)
T PRK09560 97 PAIAAVGGMVVPALIYAA----FNYNNP-----ETLRGWAIPAATDIAFALGVLALLG--KRVPVSLKVFLLALAIIDDL 165 (389)
T ss_pred HHHHHHhchHHHHHHHhe----eecCCC-----cccCccccccHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhh
Confidence 346788899999854322 211100 001123333222 334333 3332 22566667788999999999
Q ss_pred HHHHHHHHHHHHhhc--C-----hhHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHhChhHHHHHHHhhhhcCCCC
Q 043315 90 IGWLSVALTSAIIKS--D-----KGPAVCWIIKINPEGKPVKEIYVLAIGALVMGFLSDAIGTTYLLGALLMGLIIPPGP 162 (587)
Q Consensus 90 ~~~ill~i~~~~~~s--~-----~rp~~~~l~~r~~~g~~~~e~~i~~i~~~~~a~lae~~G~~~ilGAFlaGL~lp~~~ 162 (587)
.+++++++...-.-+ + .--...++.+|.. ++....+.+.-++.=+.-..-|+|+.+..-++|+.+|..+
T Consensus 166 gAI~VIA~FYt~~i~~~~L~~a~~~~~~l~~ln~~~----v~~~~~Y~~~G~~lW~~~l~SGvHaTiAGV~la~~iP~~~ 241 (389)
T PRK09560 166 GAIVIIALFYTSDLSLPALALAAIAIAVLFLLNRLG----VTKLTPYLIVGAILWFAVLKSGVHATLAGVVLAFCIPLKG 241 (389)
T ss_pred hhHhheeeecCCCCCHHHHHHHHHHHHHHHHHHHcC----CccchHHHHHHHHHHHHHHHccccHHHHHHHHHHhccccC
Confidence 999988876642211 1 2334456666642 2333444441122222335679999999999999999743
Q ss_pred Cc------hhHHHHHHHHHHHHHHHHHHH-HHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh-------
Q 043315 163 PL------GIAIIERFELVIFHFFLPFFY-IRIGQYTNLSSIQNGSRLISFEIIIGASYLGKFVGSLLIWVFI------- 228 (587)
Q Consensus 163 p~------~~~l~ekl~~~~~~~flPlFF-~~~Gl~~dl~~l~~~~~~~~~~~l~~~a~~~K~l~~~l~~~~~------- 228 (587)
+. .+++++++++.+..+.+|+|= +..|..++-..+....-.. ...+++..++||.+|.++.+++.
T Consensus 242 ~~~~~~~pl~rleh~L~p~v~~~IlPlFAlaNAGV~l~~~~~~~~~~pv-~~gI~~GLv~GK~lGI~~~s~l~vkl~~~~ 320 (389)
T PRK09560 242 KKGDEESPLHHLEHALHPWVAFAILPLFAFANAGVSLAGISLSSLTSPV-PLGIALGLFLGKQVGVFGFSWLAVKLGLAK 320 (389)
T ss_pred CCCCCCCHHHHHHHHhhhhhhhhhHHHHHhhcCCeeecCCcHHhccCcH-HHHHHHHHHhcchHHHHHHHHHHHHhCCCC
Confidence 22 367899999998888899994 6788887422232111112 33455566788998887776543
Q ss_pred ---CCChHHHHHHHHHhhhhhhHHHHHHHHhh
Q 043315 229 ---KASIPNAVIFSCILSLKGIMDLIFILRWR 257 (587)
Q Consensus 229 ---~~~~~~a~~lglll~~kG~~~li~~~i~~ 257 (587)
|++|++-..+|++=..-=++++-+++.++
T Consensus 321 lP~g~~w~~l~gv~~L~GIGFTmSLFIa~LAF 352 (389)
T PRK09560 321 LPEGANWKQIYGVSVLCGIGFTMSLFIGSLAF 352 (389)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 36778887777754433356777778777
No 20
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=98.25 E-value=0.00019 Score=77.24 Aligned_cols=228 Identities=14% Similarity=0.085 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHH-hhHHHH--HHHhhccccCCchHHHHHHHHHHHHH
Q 043315 13 ALSVGMPCFLLSFNFTISLTLVLRENIPGMVGGSFPFLLSMVLSL-NYFPVV--HALSELNLLTSDLSQLAISCAILHKT 89 (587)
Q Consensus 13 a~~ig~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~l~lg~~ls~-Ts~pVv--~iL~el~ll~s~~Grlals~avi~Di 89 (587)
.+.-|++|+++|.++=+ .+....+ ..-.+|+-++. ++|.+- .++. +-..+.+-...++-|++||+
T Consensus 106 Pi~AAlGGmivPAlIY~----~~n~~~~------~~~GWgIPmATDIAFAlgvLallG--~rvP~~LrvFLlaLAIvDDl 173 (438)
T PRK14856 106 PVIAALGGMIAPGLIYF----FLNADTP------SQHGFGIPMATDIAFALGVIMLLG--KRVPTALKVFLITLAVADDL 173 (438)
T ss_pred HHHHHHhccHHHHHHHh----heecCCC------ccCccccccHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHHh
Confidence 34677889999985322 2221111 11223333332 344333 2221 22455666788999999999
Q ss_pred HHHHHHHHHHHHhhc--C-----hhHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHhChhHHHHHHHhhhhcCCCC
Q 043315 90 IGWLSVALTSAIIKS--D-----KGPAVCWIIKINPEGKPVKEIYVLAIGALVMGFLSDAIGTTYLLGALLMGLIIPPGP 162 (587)
Q Consensus 90 ~~~ill~i~~~~~~s--~-----~rp~~~~l~~r~~~g~~~~e~~i~~i~~~~~a~lae~~G~~~ilGAFlaGL~lp~~~ 162 (587)
.+++++++...-.-+ + .--...++.+|.. ++....+.++-++.=+....-|+|+.+...++|+++|..+
T Consensus 174 gAI~VIAlFYt~~i~~~~L~~a~~~~~~l~~ln~~~----v~~~~~Y~~~G~~lW~~~l~SGVHaTiAGV~lal~iP~~~ 249 (438)
T PRK14856 174 GAIVVIALFYTTNLKFAWLLGALGVVLVLAVLNRLN----VRSLIPYLLLGVLLWFCVHQSGIHATIAAVVLAFMIPVKI 249 (438)
T ss_pred hhHhheeeecCCCCcHHHHHHHHHHHHHHHHHHHcC----CccccHHHHHHHHHHHHHHHccCcHHHHHHHHHheeeccc
Confidence 999988876642211 1 3334556666642 2233334331122222335679999999999999999743
Q ss_pred Cc--------------------------------------------hhHHHHHHHHHHHHHHHHHH-HHHhccccccccc
Q 043315 163 PL--------------------------------------------GIAIIERFELVIFHFFLPFF-YIRIGQYTNLSSI 197 (587)
Q Consensus 163 p~--------------------------------------------~~~l~ekl~~~~~~~flPlF-F~~~Gl~~dl~~l 197 (587)
+. .+++++.+++.+.-+.+|+| |+..|..++....
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~rleh~L~p~v~f~IlPlFAfaNAGV~l~~~~~ 329 (438)
T PRK14856 250 PKDSKNVELLELGKRYAETSSGALLTKEQQEILHSIEEKASALQSPLERLEHFLAPISGYFIMPLFAFANAGVSVDSSIN 329 (438)
T ss_pred ccccchhhhhhhhhhhhccccccccccchhhhhhhhhhcccccCCHHHHHHHhhhhhhHHhhHHHHHhhcCCceeccchh
Confidence 22 24577788888888999999 4788988875432
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChHHHHHHHHHhhhhhhHHHHHHHHhhh
Q 043315 198 QNGSRLISFEIIIGASYLGKFVGSLLIWVFI----------KASIPNAVIFSCILSLKGIMDLIFILRWRI 258 (587)
Q Consensus 198 ~~~~~~~~~~~l~~~a~~~K~l~~~l~~~~~----------~~~~~~a~~lglll~~kG~~~li~~~i~~~ 258 (587)
.... .. ...+++..++||.+|.+..+++. |++|++-..+|++=..-=++.+-+.+.+++
T Consensus 330 ~~~~-pv-~lGI~~GLvvGK~lGI~~~s~lavkl~~a~lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~ 398 (438)
T PRK14856 330 LEVD-KV-LLGVILGLCLGKPLGIFLITFISEKLKITARPKGISWWHILGAGLLAGIGFTMSMFISNLAFT 398 (438)
T ss_pred hccC-cH-HHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 2111 12 34455666788998887776543 367888877777533333567777887873
No 21
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=98.22 E-value=0.00013 Score=77.11 Aligned_cols=182 Identities=14% Similarity=0.104 Sum_probs=116.7
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-------hhHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHhC
Q 043315 72 LTSDLSQLAISCAILHKTIGWLSVALTSAIIKSD-------KGPAVCWIIKINPEGKPVKEIYVLAIGALVMGFLSDAIG 144 (587)
Q Consensus 72 l~s~~Grlals~avi~Di~~~ill~i~~~~~~s~-------~rp~~~~l~~r~~~g~~~~e~~i~~i~~~~~a~lae~~G 144 (587)
....+-...++-|++||+.+++++++...-.-++ .--...++.+|.. ++....+.+.-++.=+....-|
T Consensus 148 vP~~LrvFLlaLAIvDDlgAI~VIAlFYt~~i~~~~L~~a~~~~~~l~~ln~~~----v~~~~~Y~~~G~~lW~~~l~SG 223 (388)
T PRK09561 148 VPVALKIFLLALAIIDDLGAIVIIALFYTSDLSMVSLGVAAVAIAVLAVLNLCG----VRRTSVYILVGVVLWVAVLKSG 223 (388)
T ss_pred CCHHHHHHHHHHHHHHHhhhHhheeeecCCCccHHHHHHHHHHHHHHHHHHHcC----CccchHHHHHHHHHHHHHHHcc
Confidence 5566677889999999999999888766422011 2333556666642 2333444441122222335679
Q ss_pred hhHHHHHHHhhhhcCCCCCc----hhHHHHHHHHHHHHHHHHHHH-HHhcccccccccccchhHHHHHHHHHHHHHHHHH
Q 043315 145 TTYLLGALLMGLIIPPGPPL----GIAIIERFELVIFHFFLPFFY-IRIGQYTNLSSIQNGSRLISFEIIIGASYLGKFV 219 (587)
Q Consensus 145 ~~~ilGAFlaGL~lp~~~p~----~~~l~ekl~~~~~~~flPlFF-~~~Gl~~dl~~l~~~~~~~~~~~l~~~a~~~K~l 219 (587)
+|+.+..-++|+.+|...+. -+++++++++.+.-+.+|+|= +..|..++-..+....-.. ...+++..++||.+
T Consensus 224 vHaTiAGV~la~~iP~~~~~~~~pl~rleh~L~p~v~~~IlPlFAfaNAGV~l~~~~~~~~~~pv-~lgV~~GL~~GK~l 302 (388)
T PRK09561 224 VHATLAGVIVGFFIPLKEKHGRSPAERLEHGLHPWVAFLILPLFAFANAGVSLQGVTLDGLTSPL-PLGIALGLFIGKPL 302 (388)
T ss_pred ccHHHHHHHHHhhccccCCCCCCHHHHHHHHhhhhhhheeHHHHHhhcCCeeeccCcHHhhcCcH-HHHHHHHHHhcchH
Confidence 99999999999999974221 367899999999888999994 6788877321122111112 33455566788998
Q ss_pred HHHHHHHHh----------CCChHHHHHHHHHhhhhhhHHHHHHHHhhh
Q 043315 220 GSLLIWVFI----------KASIPNAVIFSCILSLKGIMDLIFILRWRI 258 (587)
Q Consensus 220 ~~~l~~~~~----------~~~~~~a~~lglll~~kG~~~li~~~i~~~ 258 (587)
|.+..+++. +++|++-..+|++=..-=++.+-+.+.+++
T Consensus 303 GI~~~~~l~vkl~~~~lP~g~~w~~l~gv~~L~GIGFTmSLFIa~LAF~ 351 (388)
T PRK09561 303 GIFLFSWLAVKLKLAKLPEGTTFKQIYAVGVLCGIGFTMSIFIASLAFG 351 (388)
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 887766543 357788877777533333557777777774
No 22
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=98.21 E-value=9.1e-05 Score=76.28 Aligned_cols=241 Identities=11% Similarity=0.022 Sum_probs=139.5
Q ss_pred CchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHhhHHHH-HHHhhccccCCchHHHH
Q 043315 2 DTTRILQVAKNALSVGMPCFLLSFNFTISLTLVLRENIPGMVGGSFPFLLSMVLSLNYFPVV-HALSELNLLTSDLSQLA 80 (587)
Q Consensus 2 D~~~l~~~~~~a~~ig~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts~pVv-~iL~el~ll~s~~Grla 80 (587)
|++...+.-||..++-+.-++++.++|..++.+++... -...+.+.+-.+++.|.-+.- .+..|+| -++|.|-.+
T Consensus 63 ~~k~~~~~l~kg~~l~~~K~~~~~~~g~~~~~~~g~~g---~~Gls~laiiaa~~~~Ng~ly~al~~~yG-~~~d~gA~~ 138 (312)
T PRK12460 63 SLKAAPQALLKGGVLTITKLGVAIVIGLLVGKFFGAEG---IFGLSGLAIVAAMSNSNGGLYAALMGEFG-DERDVGAIS 138 (312)
T ss_pred eccccchhhhhhhhhhhHHHHHHHHHHHHHHHHcCccc---ccchHHHHHHHHHhcCcHHHHHHHHHHcC-CHhhhhHHh
Confidence 44555555667777777778888888888777776421 122455666666666666666 6667777 233444332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHh--ChhHHHHHHHhhhhc
Q 043315 81 ISCAILHKTIGWLSVALTSAIIKSDKGPAVCWIIKINPEGKPVKEIYVLAIGALVMGFLSDAI--GTTYLLGALLMGLII 158 (587)
Q Consensus 81 ls~avi~Di~~~ill~i~~~~~~s~~rp~~~~l~~r~~~g~~~~e~~i~~i~~~~~a~lae~~--G~~~ilGAFlaGL~l 158 (587)
+.+ ++ +| | ++..+.+..+++++.- .+-..+=|++.|+++
T Consensus 139 ~~s--l~-------------------------------~G-P-----f~tm~aLga~gLA~ip~~~lv~lilpILiGmil 179 (312)
T PRK12460 139 ILS--LN-------------------------------DG-P-----FFTMLALGAAGLANIPIMALVAALLPLVLGMIL 179 (312)
T ss_pred hhh--hc-------------------------------cC-c-----HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence 211 11 11 1 1111333444444431 222355589999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHH
Q 043315 159 PPGPPLGIAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQNGSRLISFEIIIGASYLGKFVGSLLIWVFIKASIPNAVIF 238 (587)
Q Consensus 159 p~~~p~~~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~~~~~~~~~~l~~~a~~~K~l~~~l~~~~~~~~~~~a~~l 238 (587)
.+..+ .+.+.+++ +..+.+|+|-+..|.++|++.+....+. .+++.++.++.-+..+++..|++|.+.+-+..+
T Consensus 180 GNld~---~~~~~l~~-Gi~f~I~f~~f~LG~~lnl~~I~~~G~~--GIlL~v~vv~~t~~~~~~i~rllg~~~~~g~li 253 (312)
T PRK12460 180 GNLDP---DMRKFLTK-GGPLLIPFFAFALGAGINLSMLLQAGLA--GILLGVLVTIVTGFFNIFADRLVGGTGIAGAAA 253 (312)
T ss_pred hccch---hhHHHHhc-cceEeHHHHHHHhcCCeeHHHHHHhChH--HHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHH
Confidence 88532 34455554 3556899999999999999988654332 223333334445666666678889998888887
Q ss_pred H--HHhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 043315 239 S--CILSLKGIMDLIFILRWRIRKLIDKDTFTLAMLTHTAVTAVRTPLISLYYTPYR 293 (587)
Q Consensus 239 g--lll~~kG~~~li~~~i~~~~gli~~~~f~~lvl~~lvtt~i~~plv~~ly~p~~ 293 (587)
| ..-+.-|-..++...--++ -.-+..-.....++++|.+++|.+..+++|+.+
T Consensus 254 ~stAGnAIcgpAAVaAadP~~~--~~~~~Ataqvaa~vivTail~P~~t~~~~k~~~ 308 (312)
T PRK12460 254 SSTAGNAVATPLAIAAADPSLA--PVAAAATAQVAASVIVTAILTPLLTSWVAKKEA 308 (312)
T ss_pred HHHhhHHHHHHHHHHHhchhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7 5555444444444332222 122222333445666667777888888776543
No 23
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=98.15 E-value=0.00033 Score=73.92 Aligned_cols=183 Identities=18% Similarity=0.058 Sum_probs=114.8
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-------hhHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHhC
Q 043315 72 LTSDLSQLAISCAILHKTIGWLSVALTSAIIKSD-------KGPAVCWIIKINPEGKPVKEIYVLAIGALVMGFLSDAIG 144 (587)
Q Consensus 72 l~s~~Grlals~avi~Di~~~ill~i~~~~~~s~-------~rp~~~~l~~r~~~g~~~~e~~i~~i~~~~~a~lae~~G 144 (587)
....+--..++-|++||+.+++++++...-.-++ .--...++.+|.. + ++....+.+.-++.=+....-|
T Consensus 144 vP~~lrvFLlaLAIvDDlgAI~VIAlFYt~~i~~~~L~~A~~~~~~l~~~nr~~-~--v~~~~~Y~~~G~~lW~~~l~SG 220 (383)
T PRK14854 144 VPAKLKLLVITIAIFDDIAAIAIIAIFYTKSLSLLSLSLGTLFILAMIICNRIF-K--INRSSVYVVLGFFAWFCTIKSG 220 (383)
T ss_pred CCHHHHHHHHHHHHHHhhhhHhheeeecCCCccHHHHHHHHHHHHHHHHHHHhc-C--CceehHHHHHHHHHHHHHHHhc
Confidence 4555666778889999999998887765422011 1222234444421 1 2233334332222223335679
Q ss_pred hhHHHHHHHhhhhcCCCCCc----hhHHHHHHHHHHHHHHHHHH-HHHhcccccccccccchhHHHHHHHHHHHHHHHHH
Q 043315 145 TTYLLGALLMGLIIPPGPPL----GIAIIERFELVIFHFFLPFF-YIRIGQYTNLSSIQNGSRLISFEIIIGASYLGKFV 219 (587)
Q Consensus 145 ~~~ilGAFlaGL~lp~~~p~----~~~l~ekl~~~~~~~flPlF-F~~~Gl~~dl~~l~~~~~~~~~~~l~~~a~~~K~l 219 (587)
+|+.+...++|+++|...+. .+++++++++.+..+.+|+| |+..|..++-..+....-.. ...+++..++||.+
T Consensus 221 vHaTiAGV~~a~~iP~~~~~~~~pl~rleh~L~p~v~~~IlPlFA~aNAGV~l~~~~~~~~~~pv-~~GI~~GL~~GK~l 299 (383)
T PRK14854 221 VHATLAGFTTALCIPFRENDKDSPANFMEDSLHPWIIYFILPVFAFANAGISFSGISFSILFEPI-TLGIILGLFVGKQL 299 (383)
T ss_pred ccHHHHHHHHHHhcccCCCCCCCHHHHHHHHhhchHHHhhHHHHHhhcCCeeeccCcHHhhcCcH-HHHHHHHHHhcchH
Confidence 99999999999999974211 36788999999999999999 46788877321122111112 34455666788998
Q ss_pred HHHHHHHHh----------CCChHHHHHHHHHhhhhhhHHHHHHHHhhh
Q 043315 220 GSLLIWVFI----------KASIPNAVIFSCILSLKGIMDLIFILRWRI 258 (587)
Q Consensus 220 ~~~l~~~~~----------~~~~~~a~~lglll~~kG~~~li~~~i~~~ 258 (587)
|.+..++.. +++|++-..+|++=..-=++.+-+++.+++
T Consensus 300 GI~~~s~lavkl~~~~lP~g~~w~~l~gv~~L~GIGFTmSLFIa~LAF~ 348 (383)
T PRK14854 300 GIFSILAVFKKLKWFKLGESFSNLQLYGISLLCGIGFTMSLFIGVLAFN 348 (383)
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 887766543 367888888777533333567778888874
No 24
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=98.00 E-value=5e-05 Score=67.78 Aligned_cols=119 Identities=13% Similarity=0.082 Sum_probs=83.3
Q ss_pred cceeeecCCcccccccccccCCCCCCCCCHHHHHHHHHHhcCCCCCCcEEEEEEeeeccCCCccccccccccccccCCCc
Q 043315 318 RKNLMENTPITQHKIYVENSKSGEKPRPFVHSLITLLKAFNSSEMSPLCACVLHLVELVGRAAPLLVPHNTHKRKIKENS 397 (587)
Q Consensus 318 ril~c~~~~~~~~~v~~~~~~~~~~~~~~v~~li~Ll~~~~~~~~sp~~v~~lhlvel~~r~s~~l~~~~~~~~~~~~~~ 397 (587)
|||+| +...+ .-..+++.+..+... ....++++|+++-... . ....
T Consensus 1 ~Ilv~---------vd~s~---------~s~~al~~a~~la~~--~~~~l~ll~v~~~~~~--~------------~~~~ 46 (124)
T cd01987 1 RILVC---------ISGGP---------NAERLIRRAARLADR--LKAPWYVVYVETPRLN--R------------LSEA 46 (124)
T ss_pred CEEEE---------ECCCc---------chHHHHHHHHHHHHH--hCCCEEEEEEecCccc--c------------CCHH
Confidence 68899 88888 888888888777643 3457899999763211 0 0122
Q ss_pred hhHHHHHHHhhhcCCceEEEEEEEEecCCChHHHHHHHHhhcCCCEEEeccCCCccccc---cchhHHHhhccC-CCcEE
Q 043315 398 TDRIMRAMTKFSKSSQVTIQPFILIAPYKTMYESISKLAQDEFIPFIILPSHQSHKMQQ---GGGFNCKIQNCA-PCSVG 473 (587)
Q Consensus 398 ~~~i~~~f~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~~~~~d---g~~~n~~vl~~a-pcsVg 473 (587)
.++.++.+.+..+..++. ..+..+ .+..+.|++.|+|.++|+|++++|++....+ | +..+++++++ ||+|-
T Consensus 47 ~~~~l~~~~~~~~~~~~~--~~~~~~--~~~~~~I~~~~~~~~~dllviG~~~~~~~~~~~~G-s~~~~v~~~a~~~~v~ 121 (124)
T cd01987 47 ERRRLAEALRLAEELGAE--VVTLPG--DDVAEAIVEFAREHNVTQIVVGKSRRSRWRELFRG-SLVDRLLRRAGNIDVH 121 (124)
T ss_pred HHHHHHHHHHHHHHcCCE--EEEEeC--CcHHHHHHHHHHHcCCCEEEeCCCCCchHHHHhcc-cHHHHHHHhCCCCeEE
Confidence 345556555553333343 333344 6788999999999999999999998876532 4 8889999999 99976
Q ss_pred EE
Q 043315 474 IY 475 (587)
Q Consensus 474 Il 475 (587)
|.
T Consensus 122 v~ 123 (124)
T cd01987 122 IV 123 (124)
T ss_pred Ee
Confidence 54
No 25
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=97.91 E-value=9.8e-05 Score=67.86 Aligned_cols=135 Identities=8% Similarity=0.125 Sum_probs=82.4
Q ss_pred cceeeecCCcccccccccccCCCCCCCCCHHHHHHHHHHhcCCCCCCcEEEEEEeeeccCCCccccccc-ccccc--ccC
Q 043315 318 RKNLMENTPITQHKIYVENSKSGEKPRPFVHSLITLLKAFNSSEMSPLCACVLHLVELVGRAAPLLVPH-NTHKR--KIK 394 (587)
Q Consensus 318 ril~c~~~~~~~~~v~~~~~~~~~~~~~~v~~li~Ll~~~~~~~~sp~~v~~lhlvel~~r~s~~l~~~-~~~~~--~~~ 394 (587)
+||++ +...+ +-...++.+..+... ....++++|+++...... ..... ...+. ...
T Consensus 1 ~ILVa---------vD~S~---------~s~~al~~a~~~a~~--~~~~l~ll~v~~~~~~~~-~~~~~~~~~~~~~~~~ 59 (146)
T cd01989 1 SVAVA---------VDKDK---------KSKNALKWALDNLAT--KGQTIVLVHVHPPITSIP-SSSGKLEVASAYKQEE 59 (146)
T ss_pred CEEEE---------ecCcc---------ccHHHHHHHHHhccC--CCCcEEEEEeccCcccCC-CCccchHHHHHHHHHH
Confidence 36777 77666 667777776655433 235789999987532211 00000 00000 001
Q ss_pred CCchhHHHHHHHhhhcCCceEEEEEEEEecCCChHHHHHHHHhhcCCCEEEeccCCCccccc---cchhHHHhhccCC--
Q 043315 395 ENSTDRIMRAMTKFSKSSQVTIQPFILIAPYKTMYESISKLAQDEFIPFIILPSHQSHKMQQ---GGGFNCKIQNCAP-- 469 (587)
Q Consensus 395 ~~~~~~i~~~f~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~~~~~d---g~~~n~~vl~~ap-- 469 (587)
....++.++.+.......++.++...... .+..+.|++.|++.++|+|+++-|++..... |..+-++|++++|
T Consensus 60 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~g--~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~~~~~gssva~~Vi~~a~~~ 137 (146)
T cd01989 60 DKEAKELLLPYRCFCSRKGVQCEDVVLED--DDVAKAIVEYVADHGITKLVMGASSDNHFSMKFKKSDVASSVLKEAPDF 137 (146)
T ss_pred HHHHHHHHHHHHHHHhhcCCeEEEEEEeC--CcHHHHHHHHHHHcCCCEEEEeccCCCceeecccCCchhHHHHhcCCCC
Confidence 12234444444333233456666655543 4779999999999999999999998876521 3368899999999
Q ss_pred CcEEEE
Q 043315 470 CSVGIY 475 (587)
Q Consensus 470 csVgIl 475 (587)
|+|-+.
T Consensus 138 c~Vlvv 143 (146)
T cd01989 138 CTVYVV 143 (146)
T ss_pred ceEEEE
Confidence 997654
No 26
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=97.91 E-value=0.0022 Score=68.92 Aligned_cols=225 Identities=13% Similarity=0.038 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHH-hhHHHH--HHHhhccccCCchHHHHHHHHHHHHH
Q 043315 13 ALSVGMPCFLLSFNFTISLTLVLRENIPGMVGGSFPFLLSMVLSL-NYFPVV--HALSELNLLTSDLSQLAISCAILHKT 89 (587)
Q Consensus 13 a~~ig~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~l~lg~~ls~-Ts~pVv--~iL~el~ll~s~~Grlals~avi~Di 89 (587)
.+.-|++|+++|.++=+ .+....+ ..-.+|+-++. ++|.+- .++. +-..+.+-...++-|++||+
T Consensus 101 PiiAAlGGmivPAlIy~----~~n~~~~------~~~GWgIPmATDIAFAlgvLallG--~rvP~~LrvFLlaLAIvDDl 168 (423)
T PRK14855 101 AVVAALGGMLVPAALYT----ALNAGGP------GASGWGVPMATDIAFALGVLALLG--SRVPLGLKVFLTALAIVDDL 168 (423)
T ss_pred HHHHHHhchHHHHHHHh----eeecCCC------ccCccccccHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhhh
Confidence 34677888999875322 2211110 12233333333 444433 3332 22455677888999999999
Q ss_pred HHHHHHHHHHHHhhc--C-----hhHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHhChhHHHHHHHhhhhcCCCC
Q 043315 90 IGWLSVALTSAIIKS--D-----KGPAVCWIIKINPEGKPVKEIYVLAIGALVMGFLSDAIGTTYLLGALLMGLIIPPGP 162 (587)
Q Consensus 90 ~~~ill~i~~~~~~s--~-----~rp~~~~l~~r~~~g~~~~e~~i~~i~~~~~a~lae~~G~~~ilGAFlaGL~lp~~~ 162 (587)
.+++++++...-.-+ + .--.+.++.+|.. ++....+++.-++.=+....-|+|+.+...++|+++|..+
T Consensus 169 gAI~VIAlFYt~~i~~~~L~~a~~~~~~l~~ln~~~----v~~~~~Y~~~G~~lW~~~l~SGVHaTiAGV~lal~iP~~~ 244 (423)
T PRK14855 169 GAVLVIALFYTSGLNLLALLLAALTWALALLAGRLG----VTSLKIYAVLGALLWFFVLKSGLHPTVAGVLLALAVPIRR 244 (423)
T ss_pred hhheeeEeecCCCCCHHHHHHHHHHHHHHHHHHHcC----CccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHhccccc
Confidence 999888776642201 1 2333456666642 3333334331122222335679999999999999999741
Q ss_pred -Cc------------------------------------hhHHHHHHHHHHHHHHHHHHH-HHhcccccccccccchhHH
Q 043315 163 -PL------------------------------------GIAIIERFELVIFHFFLPFFY-IRIGQYTNLSSIQNGSRLI 204 (587)
Q Consensus 163 -p~------------------------------------~~~l~ekl~~~~~~~flPlFF-~~~Gl~~dl~~l~~~~~~~ 204 (587)
+. .+++++++++.+.-+.+|+|= +..|..++-..+ .+ .
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pl~rleh~L~p~vaf~IlPlFAfaNAGV~l~~~~~-~p---v 320 (423)
T PRK14855 245 RDPLPYLASLLDAAAPGRPEVVGARLRDLEDLLERAQSPLHRLEHALHPWSTFLILPVFALFNAGVSVSGGGL-GT---V 320 (423)
T ss_pred cccchhHHHHHHHhhcccchhhhHHHHhhhhhccccCCHHHHHHHHhhhhHHHhhHHHHHhhcCCeeecCCCC-Cc---H
Confidence 11 256888888998888999994 678888743332 22 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh----------CCChHHHHHHHHHhhhhhhHHHHHHHHhhh
Q 043315 205 SFEIIIGASYLGKFVGSLLIWVFI----------KASIPNAVIFSCILSLKGIMDLIFILRWRI 258 (587)
Q Consensus 205 ~~~~l~~~a~~~K~l~~~l~~~~~----------~~~~~~a~~lglll~~kG~~~li~~~i~~~ 258 (587)
...+++..++||.+|.++.++.. +++|++-..+|++=..-=++++-+++.+++
T Consensus 321 -~lGI~~GLvvGK~lGI~~~s~lavkl~~a~lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~ 383 (423)
T PRK14855 321 -SLGVFLGLLLGKPLGVVGGAWLAVRLGLASLPRRVNWLHMLGAGLLAGIGFTMSLFISNLAFA 383 (423)
T ss_pred -HHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 33455566788998887776543 367888887777543333567778888874
No 27
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=97.84 E-value=0.00017 Score=79.33 Aligned_cols=287 Identities=12% Similarity=0.073 Sum_probs=165.9
Q ss_pred CchHHHHhhhhHHHHHHHHHHHHHH-HHHHHHHHHHhhcCCCCCChHHHHHHHHHHHhhHHHH-HHHhhccccCCchHHH
Q 043315 2 DTTRILQVAKNALSVGMPCFLLSFN-FTISLTLVLRENIPGMVGGSFPFLLSMVLSLNYFPVV-HALSELNLLTSDLSQL 79 (587)
Q Consensus 2 D~~~l~~~~~~a~~ig~~~~~ip~~-~g~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts~pVv-~iL~el~ll~s~~Grl 79 (587)
+-+.++++......+|+.|.+++.. +|.++.++........-....++++|..+|.|-..-+ .++.|+| ..-.+=.+
T Consensus 118 ~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~~~~~~f~d~L~fGaliSATDPVtvLaIfnel~-vd~~Ly~L 196 (575)
T KOG1965|consen 118 KKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFGLLIYDLSFKDCLAFGALISATDPVTVLAIFNELG-VDPKLYTL 196 (575)
T ss_pred chhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhcccccccccHHHHHHHhhHhcccCchHHHHHHHHhC-CCcceeee
Confidence 4566778888888888877766654 4555544432111112235899999999999987667 9999988 45667778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh-hc---C----------------------hhHHHHHHHHHcCCC-CcchhHHHHHHH
Q 043315 80 AISCAILHKTIGWLSVALTSAII-KS---D----------------------KGPAVCWIIKINPEG-KPVKEIYVLAIG 132 (587)
Q Consensus 80 als~avi~Di~~~ill~i~~~~~-~s---~----------------------~rp~~~~l~~r~~~g-~~~~e~~i~~i~ 132 (587)
+-|=+++||..++++........ .+ + ..-+-..+.|.+.-+ .|.-|.-+.+.+
T Consensus 197 VFGESvLNDAvsIVlf~~i~~~~~~~~~~~~~~~~ig~Fl~~F~gS~~lGv~~GlisA~~lK~~~l~~~~~lE~al~ll~ 276 (575)
T KOG1965|consen 197 VFGESVLNDAVSIVLFNTIQKFQLGSLNDWTAFSAIGNFLYTFFGSLGLGVAIGLISALVLKFLYLRRTPSLESALMLLM 276 (575)
T ss_pred eecchhccchhHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 89999999999999988777655 11 0 122223334443222 244454444447
Q ss_pred HHHHHHHHHHhChhHHHHHHHhhhhcCCCC-----CchhHHHHHHHHHHHHHHHHHHHHHhcc-cccccccccchhHHHH
Q 043315 133 ALVMGFLSDAIGTTYLLGALLMGLIIPPGP-----PLGIAIIERFELVIFHFFLPFFYIRIGQ-YTNLSSIQNGSRLISF 206 (587)
Q Consensus 133 ~~~~a~lae~~G~~~ilGAFlaGL~lp~~~-----p~~~~l~ekl~~~~~~~flPlFF~~~Gl-~~dl~~l~~~~~~~~~ 206 (587)
.....++||.+|++.++.-++.|+.+++-- +..+.-.+.+-.+..-+-=-+-|+++|+ -+|..........+ +
T Consensus 277 sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~Gl~~f~~~k~~~~~~~f-v 355 (575)
T KOG1965|consen 277 SYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYLGLSAFDFQKHVYKSLQF-V 355 (575)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccceeeechHH-H
Confidence 778888899999999999999999999741 2222222222222233333456889996 23433332222122 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhC----------CChHHHHHHHHHhhhhhhHHHHHHHHhh-hcCC-CCHHHHHHHHHHH
Q 043315 207 EIIIGASYLGKFVGSLLIWVFIK----------ASIPNAVIFSCILSLKGIMDLIFILRWR-IRKL-IDKDTFTLAMLTH 274 (587)
Q Consensus 207 ~~l~~~a~~~K~l~~~l~~~~~~----------~~~~~a~~lglll~~kG~~~li~~~i~~-~~gl-i~~~~f~~lvl~~ 274 (587)
+...++.++++..-.+-.+.+.+ ++.++-..+.+.=--||.+.++++.--. +.+- .++-+++..+..+
T Consensus 356 ~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~lRGAvs~ALa~~~~~~~~~~~~q~i~tttl~vV 435 (575)
T KOG1965|consen 356 FGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGGLRGAVSFALALGDFTDSPHTGGQTIFTTTLVVV 435 (575)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhhhhHHHHHHHHhhhccccccccccEEEEeeeeee
Confidence 33333444555444332222222 2333344444443469999888765211 1100 1233344444444
Q ss_pred HHHH----HHHHHHHHHhcc
Q 043315 275 TAVT----AVRTPLISLYYT 290 (587)
Q Consensus 275 lvtt----~i~~plv~~ly~ 290 (587)
++|+ ..+.|+++++-.
T Consensus 436 lfT~lv~Gg~T~pml~~L~~ 455 (575)
T KOG1965|consen 436 LFTVLVFGGSTKPMLSYLMI 455 (575)
T ss_pred eeeeeeeCCccHHHHHHhcc
Confidence 4444 457899998763
No 28
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=97.72 E-value=3.6e-05 Score=81.30 Aligned_cols=183 Identities=16% Similarity=0.129 Sum_probs=106.8
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhc--C-----hhHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHhC
Q 043315 72 LTSDLSQLAISCAILHKTIGWLSVALTSAIIKS--D-----KGPAVCWIIKINPEGKPVKEIYVLAIGALVMGFLSDAIG 144 (587)
Q Consensus 72 l~s~~Grlals~avi~Di~~~ill~i~~~~~~s--~-----~rp~~~~l~~r~~~g~~~~e~~i~~i~~~~~a~lae~~G 144 (587)
....+-...++-|++||+.+++++++..+-.-+ + .--...++.+|.. ++....+.+.-++.=+....-|
T Consensus 144 vP~~lrvFLlaLAIvDDlgaIlVIA~FYt~~i~~~~L~~a~~~~~~l~~l~r~~----v~~~~~Y~~~G~~lW~~~l~SG 219 (378)
T PF06965_consen 144 VPASLRVFLLALAIVDDLGAILVIALFYTDGISLLWLLLAAAALLLLFVLNRLG----VRSLWPYLLLGILLWYAVLKSG 219 (378)
T ss_dssp S-SSSHHHHHHHHHHHHHHHHHHHHHHS-----HHHHHHHHHHHHHHHHHHHTT-------THHHHHHHHHHHHHTTTSH
T ss_pred CChHHHHHHHHHHHHhhhhhHhheeeeeCCCCCHHHHHHHHHHHHHHHHHHHCC----CceehHHHHHHHHHHHHHHHcC
Confidence 455566888999999999999998887653211 1 2334456666642 2233334331122212235679
Q ss_pred hhHHHHHHHhhhhcCCCCCch--------hHHHHHHHHHHHHHHHHHH-HHHhcccccccccccchhHHHHHHHHHHHHH
Q 043315 145 TTYLLGALLMGLIIPPGPPLG--------IAIIERFELVIFHFFLPFF-YIRIGQYTNLSSIQNGSRLISFEIIIGASYL 215 (587)
Q Consensus 145 ~~~ilGAFlaGL~lp~~~p~~--------~~l~ekl~~~~~~~flPlF-F~~~Gl~~dl~~l~~~~~~~~~~~l~~~a~~ 215 (587)
+|+.+...++|+.+|..++.+ +++++++++.+.-+.+|+| |+..|..++-..+....-.. ...+++..++
T Consensus 220 vHaTiAGV~~al~iP~~~~~~~~~~~~pl~rle~~L~p~v~~~IlPlFAlaNAGV~l~~~~~~~~~~pv-~lGI~~GLvv 298 (378)
T PF06965_consen 220 VHATIAGVLLALFIPARPRAGEREAESPLERLEHALHPWVAFVILPLFALANAGVSLSGSSLGDLTSPV-TLGIILGLVV 298 (378)
T ss_dssp HHHHHHHHHHHHHS---GGGS----S-HHHHHHHHHHHHHHHTHHHHHHHHHS----SSS---THHHHS-STTTTHHHHH
T ss_pred CCHHHHHHHHheeeeccCCCCcccCCCHHHHHHHHhhhhhhhhhHHhHhheeCceEEecCchHhhhChH-HHHHHHHHHc
Confidence 999999999999999875542 4889999999888889999 57889888865543211111 2234445567
Q ss_pred HHHHHHHHHHHHh----------CCChHHHHHHHHHhhhhhhHHHHHHHHhhhc
Q 043315 216 GKFVGSLLIWVFI----------KASIPNAVIFSCILSLKGIMDLIFILRWRIR 259 (587)
Q Consensus 216 ~K~l~~~l~~~~~----------~~~~~~a~~lglll~~kG~~~li~~~i~~~~ 259 (587)
||.+|.+..++.. +++|++-..+|++=..-=++++-+++.+++.
T Consensus 299 GK~lGI~~~~~la~kl~~~~lP~~~~w~~l~gv~~LaGIGFTmSLFIa~LAF~~ 352 (378)
T PF06965_consen 299 GKPLGIFLFSWLAVKLGLARLPDGVSWRHLYGVGLLAGIGFTMSLFIAGLAFDD 352 (378)
T ss_dssp TTGGGSTTTTTTTSS-TTT----S--GGGGTTHHHHTT--HHHHHHHHHHHSTT
T ss_pred ccchhhhhHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 8998877655332 3567776666664333335677778888775
No 29
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=97.72 E-value=4e-05 Score=68.24 Aligned_cols=131 Identities=12% Similarity=0.117 Sum_probs=79.9
Q ss_pred cceeeecCCcccccccccccCCCCCCCCCHHHHHHHHHHhcCCCCCCcEEEEEEeeeccCCCccccccccccccccCCCc
Q 043315 318 RKNLMENTPITQHKIYVENSKSGEKPRPFVHSLITLLKAFNSSEMSPLCACVLHLVELVGRAAPLLVPHNTHKRKIKENS 397 (587)
Q Consensus 318 ril~c~~~~~~~~~v~~~~~~~~~~~~~~v~~li~Ll~~~~~~~~sp~~v~~lhlvel~~r~s~~l~~~~~~~~~~~~~~ 397 (587)
|||+| +...+ +...+++.+..+... ....++++|+++.............. ....
T Consensus 4 ~Ilv~---------~d~~~---------~~~~al~~a~~la~~--~~~~i~~l~v~~~~~~~~~~~~~~~~-----~~~~ 58 (140)
T PF00582_consen 4 RILVA---------IDGSE---------ESRRALRFALELAKR--SGAEITLLHVIPPPPQYSFSAAEDEE-----SEEE 58 (140)
T ss_dssp EEEEE---------ESSSH---------HHHHHHHHHHHHHHH--HTCEEEEEEEEESCHCHHHHHHHHHH-----HHHH
T ss_pred EEEEE---------ECCCH---------HHHHHHHHHHHHHHh--hCCeEEEEEeeccccccccccccccc-----cccc
Confidence 68999 88777 777777776665432 33679999999876543321110000 0000
Q ss_pred hhHHHHHHH---hhhcCCceEEEEEEEEecCCChHHHHHHHHhhcCCCEEEeccCCCccccccc--hhHHHhhccCCCcE
Q 043315 398 TDRIMRAMT---KFSKSSQVTIQPFILIAPYKTMYESISKLAQDEFIPFIILPSHQSHKMQQGG--GFNCKIQNCAPCSV 472 (587)
Q Consensus 398 ~~~i~~~f~---~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~~~~~dg~--~~n~~vl~~apcsV 472 (587)
.+......+ ......+.........+ .+..+.|+..+++.++|+||+|.|++....+-. ++-+++++++||+|
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~dliv~G~~~~~~~~~~~~gs~~~~l~~~~~~pV 136 (140)
T PF00582_consen 59 AEEEEQARQAEAEEAEAEGGIVIEVVIES--GDVADAIIEFAEEHNADLIVMGSRGRSGLERLLFGSVAEKLLRHAPCPV 136 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSEEEEEEEE--SSHHHHHHHHHHHTTCSEEEEESSSTTSTTTSSSHHHHHHHHHHTSSEE
T ss_pred cchhhhhhhHHHHHHhhhccceeEEEEEe--eccchhhhhccccccceeEEEeccCCCCccCCCcCCHHHHHHHcCCCCE
Confidence 000000000 11111222333333334 688999999999999999999999865552311 88899999999998
Q ss_pred EEE
Q 043315 473 GIY 475 (587)
Q Consensus 473 gIl 475 (587)
-|+
T Consensus 137 lvv 139 (140)
T PF00582_consen 137 LVV 139 (140)
T ss_dssp EEE
T ss_pred EEe
Confidence 765
No 30
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=97.72 E-value=0.00029 Score=61.96 Aligned_cols=126 Identities=15% Similarity=0.187 Sum_probs=85.0
Q ss_pred cceeeecCCcccccccccccCCCCCCCCCHHHHHHHHHHhcCCCCCCcEEEEEEeeeccCCCccccccccccccccCCCc
Q 043315 318 RKNLMENTPITQHKIYVENSKSGEKPRPFVHSLITLLKAFNSSEMSPLCACVLHLVELVGRAAPLLVPHNTHKRKIKENS 397 (587)
Q Consensus 318 ril~c~~~~~~~~~v~~~~~~~~~~~~~~v~~li~Ll~~~~~~~~sp~~v~~lhlvel~~r~s~~l~~~~~~~~~~~~~~ 397 (587)
+||+| +...+ +...++..+...... ....++++|+.+-.+.... .... .....
T Consensus 1 ~ilv~---------i~~~~---------~~~~~l~~a~~~a~~--~~~~i~~l~v~~~~~~~~~---~~~~----~~~~~ 53 (130)
T cd00293 1 RILVA---------VDGSE---------ESERALRWAARLARR--LGAELVLLHVVDPPPSSAA---ELAE----LLEEE 53 (130)
T ss_pred CEEEE---------eCCCH---------HHHHHHHHHHHHHHh--cCCEEEEEEEecCCCCcch---hHHH----HHHHH
Confidence 57888 88777 888888888877644 3477899999775443221 0000 01122
Q ss_pred hhHHHHHHHhhhcCCceEEEEEEEEecCCChHHHHHHHHhhcCCCEEEeccCCCcccc---ccchhHHHhhccCCCcEEE
Q 043315 398 TDRIMRAMTKFSKSSQVTIQPFILIAPYKTMYESISKLAQDEFIPFIILPSHQSHKMQ---QGGGFNCKIQNCAPCSVGI 474 (587)
Q Consensus 398 ~~~i~~~f~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~~~~~---dg~~~n~~vl~~apcsVgI 474 (587)
.++.++.+.......++.++...... . -.++|++.+++.++|++|+|++++.... .| +.-+++++++||+|-+
T Consensus 54 ~~~~l~~~~~~~~~~~~~~~~~~~~~--~-~~~~i~~~~~~~~~dlvvig~~~~~~~~~~~~~-~~~~~ll~~~~~pvli 129 (130)
T cd00293 54 ARALLEALREALAEAGVKVETVVLEG--D-PAEAILEAAEELGADLIVMGSRGRSGLRRLLLG-SVAERVLRHAPCPVLV 129 (130)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEecC--C-CHHHHHHHHHHcCCCEEEEcCCCCCccceeeec-cHHHHHHhCCCCCEEe
Confidence 34455554444334567776665544 2 2899999999999999999998876542 23 7778999999999755
No 31
>PRK15456 universal stress protein UspG; Provisional
Probab=97.66 E-value=0.00031 Score=64.39 Aligned_cols=59 Identities=12% Similarity=0.200 Sum_probs=47.0
Q ss_pred CceEEEEEEEEecCCChHHHHHHHHhhcCCCEEEeccCCCccccc---cchhHHHhhccCCCcEEEE
Q 043315 412 SQVTIQPFILIAPYKTMYESISKLAQDEFIPFIILPSHQSHKMQQ---GGGFNCKIQNCAPCSVGIY 475 (587)
Q Consensus 412 ~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~~~~~d---g~~~n~~vl~~apcsVgIl 475 (587)
..+.++..+.. -+..+.|++.|+++++|+||+|-|++. ..+ | ++-.+|++++||+|-|.
T Consensus 80 ~~~~v~~~v~~---G~~~~~I~~~a~~~~~DLIVmG~~g~~-~~~~llG-S~a~~v~~~a~~pVLvV 141 (142)
T PRK15456 80 DPSRIKQHVRF---GSVRDEVNELAEELGADVVVIGSRNPS-ISTHLLG-SNASSVIRHANLPVLVV 141 (142)
T ss_pred CCcceEEEEcC---CChHHHHHHHHhhcCCCEEEEcCCCCC-ccceecC-ccHHHHHHcCCCCEEEe
Confidence 45667766655 467899999999999999999999864 422 4 77899999999997654
No 32
>PRK15005 universal stress protein F; Provisional
Probab=97.63 E-value=0.00058 Score=62.45 Aligned_cols=59 Identities=20% Similarity=0.261 Sum_probs=44.2
Q ss_pred CceEEEEEEEEecCCChHHHHHHHHhhcCCCEEEeccCCCccccc---cchhHHHhhccCCCcEEEE
Q 043315 412 SQVTIQPFILIAPYKTMYESISKLAQDEFIPFIILPSHQSHKMQQ---GGGFNCKIQNCAPCSVGIY 475 (587)
Q Consensus 412 ~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~~~~~d---g~~~n~~vl~~apcsVgIl 475 (587)
..++++....- -+-.+.|++.|+++++|+|+++-|++ ...+ | +.-.+|++++||+|-|.
T Consensus 82 ~~~~~~~~v~~---G~p~~~I~~~a~~~~~DLIV~Gs~~~-~~~~~llG-S~a~~vl~~a~cpVlvV 143 (144)
T PRK15005 82 PTDRVHVHVEE---GSPKDRILELAKKIPADMIIIASHRP-DITTYLLG-SNAAAVVRHAECSVLVV 143 (144)
T ss_pred CCCceEEEEeC---CCHHHHHHHHHHHcCCCEEEEeCCCC-Cchheeec-chHHHHHHhCCCCEEEe
Confidence 34455555443 46689999999999999999998743 3312 4 77899999999997664
No 33
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=97.62 E-value=0.0021 Score=66.19 Aligned_cols=239 Identities=14% Similarity=0.071 Sum_probs=131.3
Q ss_pred CCchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCCCChHHHHHHHHHHHhhHHHH-HHHhhccccCCchH
Q 043315 1 MDTTRILQVAKNALSVGMPCFLLSFNFTISLTLVLRENIP--GMVGGSFPFLLSMVLSLNYFPVV-HALSELNLLTSDLS 77 (587)
Q Consensus 1 mD~~~l~~~~~~a~~ig~~~~~ip~~~g~~~~~~l~~~~~--~~~~~~~~l~lg~~ls~Ts~pVv-~iL~el~ll~s~~G 77 (587)
+|++...+.-||...+-+.-+++..++|..++.+++.... +.....+.+.+-.+++.+.-+.- .+..|+|- ++|.|
T Consensus 62 I~~k~~~~~lkkg~~ll~~K~~~~~~lgl~~~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~~~yGd-~~D~g 140 (314)
T PF03812_consen 62 IDLKSAGKVLKKGGVLLLVKFIIGALLGLLVGKFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALMGQYGD-EEDVG 140 (314)
T ss_pred cchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHcCccccccccccchHHHHHHHHHhcCCHHHHHHHHHHhCC-HHHhH
Confidence 4677777788888888888899999999888888875321 00123566777777777777777 78888873 34444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHhChh---HHHHHHHh
Q 043315 78 QLAISCAILHKTIGWLSVALTSAIIKSDKGPAVCWIIKINPEGKPVKEIYVLAIGALVMGFLSDAIGTT---YLLGALLM 154 (587)
Q Consensus 78 rlals~avi~Di~~~ill~i~~~~~~s~~rp~~~~l~~r~~~g~~~~e~~i~~i~~~~~a~lae~~G~~---~ilGAFla 154 (587)
-..+-+ ++| .|++.-+. +..+.+++ +-.. ..+=||+.
T Consensus 141 A~~i~s--l~~------------------GPf~tMl~-------------------LG~sG~a~-ip~~~lv~~llP~ii 180 (314)
T PF03812_consen 141 AFSILS--LND------------------GPFFTMLA-------------------LGASGLAN-IPWMSLVAALLPIII 180 (314)
T ss_pred HHHHHH--hhh------------------hHHHHHHH-------------------HhhccccC-CCHHHHHHHHHHHHH
Confidence 332211 111 22222211 11111111 1111 12349999
Q ss_pred hhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccch-hHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCh
Q 043315 155 GLIIPPGPPLGIAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQNGS-RLISFEIIIGASYLGKFVGSLLIWVFI-KASI 232 (587)
Q Consensus 155 GL~lp~~~p~~~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~~~-~~~~~~~l~~~a~~~K~l~~~l~~~~~-~~~~ 232 (587)
|+++.+.. +++.+-+.+ +...++|+|-...|..+|+..+.... ... ++.++ .++.-....++.-|+. |-+-
T Consensus 181 G~iLGNLD---~~~r~fl~~-~~~~lIPF~~f~lGa~inl~~i~~aGl~GI-lLgv~--~~~vtg~~~~~~dr~i~~~~g 253 (314)
T PF03812_consen 181 GMILGNLD---PDFRKFLAP-GVPILIPFFGFALGAGINLSNIIKAGLSGI-LLGVI--VVVVTGIPLYLADRLILKGNG 253 (314)
T ss_pred HHHHhcCC---HHHHHHHhc-CCCeeeehhhhhhcCCCCHHHHHHhCcchH-HHHHH--HHHHHhHHHHHHHHHHcCCCC
Confidence 99999763 455555555 46789999999999999998876432 221 11111 1222233345555553 3221
Q ss_pred HHHHHHHHHhhhhhhHHH----HHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 043315 233 PNAVIFSCILSLKGIMDL----IFILRWRIRKLIDKDTFTLAMLTHTAVTAVRTPLISLYYTP 291 (587)
Q Consensus 233 ~~a~~lglll~~kG~~~l----i~~~i~~~~gli~~~~f~~lvl~~lvtt~i~~plv~~ly~p 291 (587)
.- |...++.+.-.. +++..--+..-.-+..-..+...+++|++++|.+..+++|+
T Consensus 254 ~a----G~A~sstAGnavatPaaiA~~dP~~~~~~~~ATaQvAaavIvTail~P~lt~~~~kr 312 (314)
T PF03812_consen 254 VA----GAAISSTAGNAVATPAAIAAADPSFAPYAASATAQVAAAVIVTAILTPILTSWWAKR 312 (314)
T ss_pred ce----eehHHhhhhhhhhhhHHHHHhChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11 333333222222 22222112222223333445566777778888888887753
No 34
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=97.45 E-value=0.00053 Score=62.92 Aligned_cols=49 Identities=8% Similarity=0.011 Sum_probs=39.4
Q ss_pred CChHHHHHHHHhhcCCCEEEeccCCCccccccchhHHHhhccCCCcEEEE
Q 043315 426 KTMYESISKLAQDEFIPFIILPSHQSHKMQQGGGFNCKIQNCAPCSVGIY 475 (587)
Q Consensus 426 ~~m~~dI~~~A~e~~~~lIilp~h~~~~~~dg~~~n~~vl~~apcsVgIl 475 (587)
-+-++.|++.|++.++|+||+|-|++....=| ++-.+|++++||+|-|.
T Consensus 89 G~p~~~I~~~a~~~~~DLIV~Gs~~~~~~~lg-Sva~~v~~~a~~pVLvv 137 (144)
T PRK15118 89 GDLGQVLVDAIKKYDMDLVVCGHHQDFWSKLM-SSARQLINTVHVDMLIV 137 (144)
T ss_pred cCHHHHHHHHHHHhCCCEEEEeCcccHHHHHH-HHHHHHHhhCCCCEEEe
Confidence 56689999999999999999999964221114 77889999999996665
No 35
>PRK11175 universal stress protein UspE; Provisional
Probab=97.40 E-value=0.00049 Score=71.39 Aligned_cols=65 Identities=15% Similarity=0.239 Sum_probs=49.6
Q ss_pred CCceEEEEEEEEecCCChHHHHHHHHhhcCCCEEEeccCCCccccc---cchhHHHhhccCCCcEEEEEeC
Q 043315 411 SSQVTIQPFILIAPYKTMYESISKLAQDEFIPFIILPSHQSHKMQQ---GGGFNCKIQNCAPCSVGIYVDR 478 (587)
Q Consensus 411 ~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~~~~~d---g~~~n~~vl~~apcsVgIlvdR 478 (587)
..+++++...... .+.++.|++.|+++++|+||+++|++....+ | ..-.++++++||+|-+.-++
T Consensus 80 ~~~~~~~~~v~~~--g~~~~~i~~~a~~~~~DLiV~G~~~~~~~~~~~~g-s~~~~l~~~~~~pvlvv~~~ 147 (305)
T PRK11175 80 DAGIPIEIKVVWH--NRPFEAIIQEVIAGGHDLVVKMTHQHDKLESVIFT-PTDWHLLRKCPCPVLMVKDQ 147 (305)
T ss_pred hcCCceEEEEecC--CCcHHHHHHHHHhcCCCEEEEeCCCCcHHHhhccC-hhHHHHHhcCCCCEEEeccc
Confidence 3456666655543 5778999999999999999999997654411 3 66678999999998887653
No 36
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=97.30 E-value=0.0042 Score=63.61 Aligned_cols=239 Identities=11% Similarity=0.092 Sum_probs=120.1
Q ss_pred CchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--CCCChHHHHHHHHHHHhhHHHH-HHHhhccccCCchHH
Q 043315 2 DTTRILQVAKNALSVGMPCFLLSFNFTISLTLVLRENIPG--MVGGSFPFLLSMVLSLNYFPVV-HALSELNLLTSDLSQ 78 (587)
Q Consensus 2 D~~~l~~~~~~a~~ig~~~~~ip~~~g~~~~~~l~~~~~~--~~~~~~~l~lg~~ls~Ts~pVv-~iL~el~ll~s~~Gr 78 (587)
|++...+.-||..++-+.-++++.++|..++.+++..... .-...+.+.+-.+++.|.-+.- .+..|+| -++|.|-
T Consensus 63 ~~k~~g~~l~kg~~l~~~K~~i~~~~g~~~~~~~g~~Gi~~g~~~GlS~LAiiaA~~nsNggLY~aL~~qyG-d~~D~gA 141 (314)
T TIGR00793 63 DLSATGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEDGVEVGFFAGLSTLALVAAMDMTNGGLYASIMQQYG-TKEEAGA 141 (314)
T ss_pred eecccchhhhhcceeeeHHHHHHHHHHHHHHHHcCcCCccccceeccHHHHHHHHHhCCcHHHHHHHHHHcC-CHhhhhh
Confidence 4444455556666666777888888888888877643210 0112455666666666666656 6667777 2344443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHhChh---HHHHHHHhh
Q 043315 79 LAISCAILHKTIGWLSVALTSAIIKSDKGPAVCWIIKINPEGKPVKEIYVLAIGALVMGFLSDAIGTT---YLLGALLMG 155 (587)
Q Consensus 79 lals~avi~Di~~~ill~i~~~~~~s~~rp~~~~l~~r~~~g~~~~e~~i~~i~~~~~a~lae~~G~~---~ilGAFlaG 155 (587)
.++.+ ++| .|++.- +.+..+.+++ +-.. ..+=|++.|
T Consensus 142 ~~i~s--l~~------------------GPf~TM-------------------i~LG~sGlA~-ip~~~lv~~ilPlliG 181 (314)
T TIGR00793 142 FVLMS--LES------------------GPLMTM-------------------VILGTAGIAS-FEPHVFVGAVLPFLVG 181 (314)
T ss_pred hhhhh--hcc------------------CcHHHH-------------------HHHhhccCCC-CCHHHHHHHHHHHHHH
Confidence 32211 111 122211 2222222222 1111 123489999
Q ss_pred hhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccch-hHHHHHHHHHHHHHHHHHHHHHHHHHhC-CChH
Q 043315 156 LIIPPGPPLGIAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQNGS-RLISFEIIIGASYLGKFVGSLLIWVFIK-ASIP 233 (587)
Q Consensus 156 L~lp~~~p~~~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~~~-~~~~~~~l~~~a~~~K~l~~~l~~~~~~-~~~~ 233 (587)
.++.+.. +++.+-+.+ +....+|+|-...|..+|++.+.... ... ++.++ ..+.--...++.-|+.+ -+-.
T Consensus 182 ~ilGNLD---~~~r~fl~~-~~~~lIpFf~FaLGaginl~~i~~aGl~GI-lLGl~--v~~vtG~~~~~~dr~~~g~~g~ 254 (314)
T TIGR00793 182 FALGNLD---PELRDFFSK-AVQTLIPFFAFALGNTIDLGVIIQTGLLGI-LLGVS--VIILTGIPLILADKFIGGGDGT 254 (314)
T ss_pred HHHhcCC---HHHHHHhcc-CCCeeeehhhhhhcCCCCHHHHHHhCcchH-HHHHH--HHHHHhHHHHHHHHHhcCCCCc
Confidence 9999864 445554554 35678999999999999998875432 221 11111 12223344555566663 2222
Q ss_pred HHHHHHHHhhhhhhH---HHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 043315 234 NAVIFSCILSLKGIM---DLIFILRWRIRKLIDKDTFTLAMLTHTAVTAVRTPLISLYYTP 291 (587)
Q Consensus 234 ~a~~lglll~~kG~~---~li~~~i~~~~gli~~~~f~~lvl~~lvtt~i~~plv~~ly~p 291 (587)
-+.+.+ ++-|.. ..+++..--+..-.-+..-.....++++|.+++|.+..+++|+
T Consensus 255 aG~A~s---stAGnAvatPaavA~adPs~~~~a~~ATaqvAaavivTaiL~Pilta~~~kr 312 (314)
T TIGR00793 255 AGIAAS---SSAGAAVATPVLIAEMVPAFKPVAPAATALVATSVIVTSLLVPIATVWWSKK 312 (314)
T ss_pred hhhHHH---HHHHHhhhhHHHHHHhChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222222 122222 1122221111111222222234445666666677777777764
No 37
>PRK09982 universal stress protein UspD; Provisional
Probab=97.30 E-value=0.0012 Score=60.76 Aligned_cols=48 Identities=15% Similarity=0.073 Sum_probs=37.7
Q ss_pred CChHHHHHHHHhhcCCCEEEeccCCCccccccc-hhHHHhhccCCCcEEEE
Q 043315 426 KTMYESISKLAQDEFIPFIILPSHQSHKMQQGG-GFNCKIQNCAPCSVGIY 475 (587)
Q Consensus 426 ~~m~~dI~~~A~e~~~~lIilp~h~~~~~~dg~-~~n~~vl~~apcsVgIl 475 (587)
-+..+.|++.|++.++|+||+|-| +... ... .+-++|+++++|+|-|.
T Consensus 89 G~p~~~I~~~A~~~~aDLIVmG~~-~~~~-~~~~~va~~V~~~s~~pVLvv 137 (142)
T PRK09982 89 GEMPETLLEIMQKEQCDLLVCGHH-HSFI-NRLMPAYRGMINKMSADLLIV 137 (142)
T ss_pred cCHHHHHHHHHHHcCCCEEEEeCC-hhHH-HHHHHHHHHHHhcCCCCEEEe
Confidence 477999999999999999999965 3222 111 47789999999996654
No 38
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=97.21 E-value=0.16 Score=54.71 Aligned_cols=117 Identities=12% Similarity=0.129 Sum_probs=75.5
Q ss_pred HHHHHHhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043315 148 LLGALLMGLIIPPGPPLGIAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQNGSRLISFEIIIGASYLGKFVGSLLIWVF 227 (587)
Q Consensus 148 ilGAFlaGL~lp~~~p~~~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~~~~~~~~~~l~~~a~~~K~l~~~l~~~~ 227 (587)
++-....|++.... |..+.+ .--+.+ ..+|+=+||+.+|.+.|+..+.+... .+++.++.+...++..++.+|+
T Consensus 243 il~~tt~~l~~~~~-~~~~~l-~g~~~l-g~~lly~ffa~IGa~a~i~~l~~ap~---~~l~~~i~l~iH~~l~l~~~kl 316 (378)
T PF05684_consen 243 ILTVTTLGLATSFP-PFRKLL-RGASEL-GTFLLYLFFAVIGASADISELLDAPS---LFLFGFIILAIHLLLMLILGKL 316 (378)
T ss_pred HHHHHHHHHHHhcc-chhhcC-CchHHH-HHHHHHHHHHHHccccCHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556665433 555554 344554 56888899999999999998765322 2344555567788889999999
Q ss_pred hCCChHHHHHHHHHhhhhhhHHHHHHHHhhhcCCCCHHHHHHHH
Q 043315 228 IKASIPNAVIFSCILSLKGIMDLIFILRWRIRKLIDKDTFTLAM 271 (587)
Q Consensus 228 ~~~~~~~a~~lglll~~kG~~~li~~~i~~~~gli~~~~f~~lv 271 (587)
+|+|..+... +..=|.-|-..-.....++...++.+-+...++
T Consensus 317 ~k~~l~~~~v-AS~AnIGGpaTA~a~A~a~~~~Lv~pgvL~gvl 359 (378)
T PF05684_consen 317 FKIDLFELLV-ASNANIGGPATAPAVAAAKGPSLVPPGVLMGVL 359 (378)
T ss_pred HCCCHHHHHH-HhhcccCCcchHHHHHHhcCCccHHHHHHHHHH
Confidence 9999877655 444466666666565566655555544443333
No 39
>PRK11175 universal stress protein UspE; Provisional
Probab=97.17 E-value=0.0018 Score=67.19 Aligned_cols=54 Identities=17% Similarity=0.152 Sum_probs=45.8
Q ss_pred CChHHHHHHHHhhcCCCEEEeccCCCccccc---cchhHHHhhccCCCcEEEEEeCCC
Q 043315 426 KTMYESISKLAQDEFIPFIILPSHQSHKMQQ---GGGFNCKIQNCAPCSVGIYVDRGI 480 (587)
Q Consensus 426 ~~m~~dI~~~A~e~~~~lIilp~h~~~~~~d---g~~~n~~vl~~apcsVgIlvdRg~ 480 (587)
.+..+.|++.|+++++|+|+++.|++..... | +..++|++++||+|-++-.+|+
T Consensus 247 G~~~~~I~~~a~~~~~DLIVmG~~~~~~~~~~llG-S~a~~v~~~~~~pVLvv~~~~~ 303 (305)
T PRK11175 247 GLPEEVIPDLAEHLDAELVILGTVGRTGLSAAFLG-NTAEHVIDHLNCDLLAIKPDGY 303 (305)
T ss_pred CCHHHHHHHHHHHhCCCEEEECCCccCCCcceeec-chHHHHHhcCCCCEEEEcCCCC
Confidence 5678899999999999999999998876532 4 7889999999999888877665
No 40
>PRK10116 universal stress protein UspC; Provisional
Probab=97.13 E-value=0.0023 Score=58.39 Aligned_cols=133 Identities=8% Similarity=0.075 Sum_probs=74.2
Q ss_pred cceeeecCCcccccccccccCCCCCCCCCHHHHHHHHHHhcCCCCCCcEEEEEEeeeccCCCccccccccccccccCCCc
Q 043315 318 RKNLMENTPITQHKIYVENSKSGEKPRPFVHSLITLLKAFNSSEMSPLCACVLHLVELVGRAAPLLVPHNTHKRKIKENS 397 (587)
Q Consensus 318 ril~c~~~~~~~~~v~~~~~~~~~~~~~~v~~li~Ll~~~~~~~~sp~~v~~lhlvel~~r~s~~l~~~~~~~~~~~~~~ 397 (587)
+||++ +...+ +....+.....+... ....++++|.++...-.. .+ .....+. .....
T Consensus 5 ~ILv~---------~D~s~---------~s~~al~~A~~lA~~--~~a~l~ll~v~~~~~~~~-~~-~~~~~~~-~~~~~ 61 (142)
T PRK10116 5 NILVA---------VAVTP---------ESQQLLAKAVSIARP--VNGKISLITLASDPEMYN-QF-AAPMLED-LRSVM 61 (142)
T ss_pred eEEEE---------ccCCc---------chHHHHHHHHHHHHH--hCCEEEEEEEccCcccch-hh-hHHHHHH-HHHHH
Confidence 57777 66666 555665655555422 224688899986431100 00 0000000 00011
Q ss_pred hhHHHHHHHhhhcCCceEEEEEEEEecCCChHHHHHHHHhhcCCCEEEeccCCCccccccc-hhHHHhhccCCCcEEEEE
Q 043315 398 TDRIMRAMTKFSKSSQVTIQPFILIAPYKTMYESISKLAQDEFIPFIILPSHQSHKMQQGG-GFNCKIQNCAPCSVGIYV 476 (587)
Q Consensus 398 ~~~i~~~f~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~~~~~dg~-~~n~~vl~~apcsVgIlv 476 (587)
.++..+.++.+....++....... .+.+-.+.|++.|++.++|+||+|=|++... ... ..-.++++++||+|-|+-
T Consensus 62 ~~~~~~~l~~~~~~~~~~~~~~~~--~~G~~~~~I~~~a~~~~~DLiV~g~~~~~~~-~~~~s~a~~v~~~~~~pVLvv~ 138 (142)
T PRK10116 62 QEETQSFLDKLIQDADYPIEKTFI--AYGELSEHILEVCRKHHFDLVICGNHNHSFF-SRASCSAKRVIASSEVDVLLVP 138 (142)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEE--ecCCHHHHHHHHHHHhCCCEEEEcCCcchHH-HHHHHHHHHHHhcCCCCEEEEe
Confidence 112223333333333444322222 3467789999999999999999998876443 211 445799999999977663
No 41
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=96.97 E-value=0.018 Score=60.70 Aligned_cols=256 Identities=13% Similarity=0.067 Sum_probs=149.4
Q ss_pred CCchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHH-----HHHHhhHHHH-HHHhhccccCC
Q 043315 1 MDTTRILQVAKNALSVGMPCFLLSFNFTISLTLVLRENIPGMVGGSFPFLLSM-----VLSLNYFPVV-HALSELNLLTS 74 (587)
Q Consensus 1 mD~~~l~~~~~~a~~ig~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~l~lg~-----~ls~Ts~pVv-~iL~el~ll~s 74 (587)
||-+.++|...|-+..-+.+.+..+++|..++.+++.... ...+++.+ -...-+.|.- -.=+-.+.-..
T Consensus 42 m~Rk~Lik~~~r~~p~il~g~~~a~~~g~lvG~l~G~~~~-----~~~~~i~lPIm~GG~GaGavPLS~~Y~~~~g~~~~ 116 (347)
T TIGR00783 42 MNRKLLLKALMRFIPPALIGMVLAVIVGILVGTLFGLGFD-----HSLMYIVMPIMAGGVGAGIVPLSIIYSAITGRSSE 116 (347)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHh-----HhhheeeehhcCCCcccchhhHHHHHHHHhCCCHH
Confidence 6777788888887777777777777777777777765321 11111111 1111122222 11122344455
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhh--c---C----hhHH-HHHHHHHcCCCC-c--chhHHHHHH---HHHHHHH
Q 043315 75 DLSQLAISCAILHKTIGWLSVALTSAIIK--S---D----KGPA-VCWIIKINPEGK-P--VKEIYVLAI---GALVMGF 138 (587)
Q Consensus 75 ~~Grlals~avi~Di~~~ill~i~~~~~~--s---~----~rp~-~~~l~~r~~~g~-~--~~e~~i~~i---~~~~~a~ 138 (587)
++=..++.+.++..+++++.-+++..+.+ . + .|.- -.-..+..++.+ + .++.-...+ ..+..+.
T Consensus 117 ~~~s~~ip~~~igni~AIi~agll~~lG~~~p~ltG~G~L~~~~~~~~~~~~~~~~~~~~~~~~~g~Gl~~a~~~y~~g~ 196 (347)
T TIGR00783 117 EIFSQLIPAVIIGNIFAIICAGLLSRIGKKRPKLNGHGELVRSEKREDAEKAKEITEIKIDVKLMGSGVLFAVALFMAGG 196 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCCceEeecCCcchhhhccccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 55566788888889888887776655441 1 1 2210 000001111111 1 122211111 4444443
Q ss_pred HHHHh-ChhHHHHHHHhhhhcCCCCCchhHHHHHHHHH---HHHHHHHHHHHHhccc-ccccccccc-hhHHHHHHHHHH
Q 043315 139 LSDAI-GTTYLLGALLMGLIIPPGPPLGIAIIERFELV---IFHFFLPFFYIRIGQY-TNLSSIQNG-SRLISFEIIIGA 212 (587)
Q Consensus 139 lae~~-G~~~ilGAFlaGL~lp~~~p~~~~l~ekl~~~---~~~~flPlFF~~~Gl~-~dl~~l~~~-~~~~~~~~l~~~ 212 (587)
+.+.+ ++|+..-..++|+++....-..+.++++...+ ...-+.+..++-+|+. +|++.+.+. ++. .+++++.
T Consensus 197 l~~~~~~Ih~~v~mII~~vi~k~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~--~vviiv~ 274 (347)
T TIGR00783 197 LLKSFPGIPAYAFMILIAAALKAFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQ--FVVICLS 274 (347)
T ss_pred HHHhcccCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchh--HhhhHHH
Confidence 33344 78999999999999988755666777765544 2333444444556765 788776543 343 4556666
Q ss_pred HHHHHHHHHHHHHHHhCCChHHHHH-HHHHhhhhhhH-HHHHHHHhhhcCCCC
Q 043315 213 SYLGKFVGSLLIWVFIKASIPNAVI-FSCILSLKGIM-DLIFILRWRIRKLID 263 (587)
Q Consensus 213 a~~~K~l~~~l~~~~~~~~~~~a~~-lglll~~kG~~-~li~~~i~~~~gli~ 263 (587)
.+++=.+++++.+|++|+-+-|+-. .|+-|+.+|-. |+++.+.+.+.++++
T Consensus 275 ~Vlg~ii~s~lvGKllG~YPiE~aItagLC~~~~GGtGDvavLsAa~RM~Lmp 327 (347)
T TIGR00783 275 VVVAMILGGAFLGKLMGMYPVESAITAGLCNSGMGGTGDVAVLSASNRMNLIP 327 (347)
T ss_pred HHHHHHHHHHHHHHHhCCChHHHHHHHhhhccCCCCCCceeeeehhhhccccc
Confidence 7788899999999999986666554 46678766655 888888888888876
No 42
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=96.95 E-value=0.15 Score=52.68 Aligned_cols=181 Identities=19% Similarity=0.140 Sum_probs=113.6
Q ss_pred cccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------ChhHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHH
Q 043315 70 NLLTSDLSQLAISCAILHKTIGWLSVALTSAIIKS-------DKGPAVCWIIKINPEGKPVKEIYVLAIGALVMGFLSDA 142 (587)
Q Consensus 70 ~ll~s~~Grlals~avi~Di~~~ill~i~~~~~~s-------~~rp~~~~l~~r~~~g~~~~e~~i~~i~~~~~a~lae~ 142 (587)
+...+.+--..++-|++||+-+++++++.....-+ ..--...-..+|..-.+ . ..|+.+-.++-.+. ..
T Consensus 149 ~rVP~sLKiFLlaLAI~DDlgAIvIIAlFYt~~Ls~~al~~a~~~i~vL~~lN~~~v~~-l-~~Y~~~gviLW~~v--lk 224 (390)
T COG3004 149 SRVPLSLKIFLLALAIIDDLGAIVIIALFYTTDLSMAALGIAALAIAVLAVLNRLGVRR-L-SPYLLVGVILWIAV--LK 224 (390)
T ss_pred CCCChHHHHHHHHHHHHhhcchhhhhhhhhcCCccHHHHHHHHHHHHHHHHHHHhCchh-h-hHHHHHHHHHHHHH--HH
Confidence 34667777888999999999999888876643211 12222223334322111 1 12332223332222 35
Q ss_pred hChhHHHHHHHhhhhcCCCCC----chhHHHHHHHHHHHHHHHHHH-HHHhccccc---ccccccchhHHHHHHHHHHHH
Q 043315 143 IGTTYLLGALLMGLIIPPGPP----LGIAIIERFELVIFHFFLPFF-YIRIGQYTN---LSSIQNGSRLISFEIIIGASY 214 (587)
Q Consensus 143 ~G~~~ilGAFlaGL~lp~~~p----~~~~l~ekl~~~~~~~flPlF-F~~~Gl~~d---l~~l~~~~~~~~~~~l~~~a~ 214 (587)
-|+|+.+-.-+.|+.+|-..+ --+++++.+.+.+.-+.+|+| |+..|..++ ...+.+. . .+.++...+
T Consensus 225 SGVHATLAGVi~~f~IPl~~k~~~spl~~leh~L~pwvaf~IlPlFaFaNAGvsl~g~~~~~l~s~---l-~lgI~lGL~ 300 (390)
T COG3004 225 SGVHATLAGVILAFFIPLKTKEGESPLERLEHALHPWVAFFILPLFAFANAGVSLQGVSLSGLTSP---L-TLGIILGLF 300 (390)
T ss_pred hhhHHHHHHHHHHeeeeccCCCCCCcHHHHHHHhhhhHHHHHHHHHHHccCCcccccccccccccc---h-HHHHHHHHH
Confidence 699999999999999995422 236788888888888889999 567887776 3333322 2 345666678
Q ss_pred HHHHHHHHHHHHHh----------CCChHHHHHHHHHhhhhh-hHHHHHHHHhhhc
Q 043315 215 LGKFVGSLLIWVFI----------KASIPNAVIFSCILSLKG-IMDLIFILRWRIR 259 (587)
Q Consensus 215 ~~K~l~~~l~~~~~----------~~~~~~a~~lglll~~kG-~~~li~~~i~~~~ 259 (587)
+||-+|.+..++.. +.+|++-...+++ +-.| ++++-+...+++.
T Consensus 301 ~GKplGIf~fs~lAvkl~lA~lP~g~~~~qi~~v~iL-cGIGFTMSlFI~~LAf~~ 355 (390)
T COG3004 301 LGKPLGIFLFSWLAVKLKLAKLPEGISWKQIYGVSIL-CGIGFTMSLFIASLAFGS 355 (390)
T ss_pred hcCcchhhhhHHHHHHhhhccCCCCCCHHHHHHHHHH-HhhhHHHHHHHHHHhcCC
Confidence 89988887776542 4677887777765 4444 4566666666654
No 43
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=96.84 E-value=0.028 Score=58.12 Aligned_cols=209 Identities=15% Similarity=0.107 Sum_probs=125.3
Q ss_pred hHHHHHHHHHHHhhHHHH--HHHhhccccCCchH---HHHHHHHHHHHHHHHHHHHHHHHHh--h----c---C------
Q 043315 46 SFPFLLSMVLSLNYFPVV--HALSELNLLTSDLS---QLAISCAILHKTIGWLSVALTSAII--K----S---D------ 105 (587)
Q Consensus 46 ~~~l~lg~~ls~Ts~pVv--~iL~el~ll~s~~G---rlals~avi~Di~~~ill~i~~~~~--~----s---~------ 105 (587)
..++.++.+.+.|- |++ .+..+-+..+.--| .+..+-+-.||-.++.++-+..-+. + . |
T Consensus 131 ~~Sl~iaaCiTaTD-PiLsssIV~~g~~akrvPeriR~lL~AESGcNDGMaipflflai~Ll~h~~~r~~~rdwv~~~iL 209 (467)
T KOG4505|consen 131 LTSLLIAACITATD-PILSSSIVGGGKFAKRVPERIRNLLAAESGCNDGMAIPFLFLAIDLLRHKPRRKAGRDWVCDNIL 209 (467)
T ss_pred HHHHHHHHHccCCc-hhHHHHHhcCchHhhhChHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCchhccCCceehhHHH
Confidence 45666666666665 444 55565555554444 4566667788887777665544433 1 1 2
Q ss_pred ------------hhHHHHHHHHHcCC-CCcchhHHH-HHH-HHHHHHHHHHHhChhHHHHHHHhhhhcCCCCCchhHHHH
Q 043315 106 ------------KGPAVCWIIKINPE-GKPVKEIYV-LAI-GALVMGFLSDAIGTTYLLGALLMGLIIPPGPPLGIAIIE 170 (587)
Q Consensus 106 ------------~rp~~~~l~~r~~~-g~~~~e~~i-~~i-~~~~~a~lae~~G~~~ilGAFlaGL~lp~~~p~~~~l~e 170 (587)
...+.+..+|...+ +---.|.++ +-+ +.+.|+.+.+.+|.+-.+-.|.||+.++=...+..+..|
T Consensus 210 yec~fg~llG~vIG~l~r~~lk~aekkrlid~eSfl~~~vvl~lfc~gigtiiGvddLl~sFfAGi~Fswd~wFsk~t~~ 289 (467)
T KOG4505|consen 210 YECFFGCLLGCVIGYLSRQGLKFAEKKRLIDRESFLIFYVVLALFCMGIGTIIGVDDLLVSFFAGIVFSWDEWFSKKTKE 289 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhhhheechhHHHHHHHhhhhcchhHHhhhhhhh
Confidence 22222333332111 111124443 333 899999999999999999999999999976566554443
Q ss_pred -HHHHHHHHHHHHHHHHHhcccccccccccc----hhHHHHHHHHHHHHHH-HHHHHHHHHHHh--CCChHHHHHHHHHh
Q 043315 171 -RFELVIFHFFLPFFYIRIGQYTNLSSIQNG----SRLISFEIIIGASYLG-KFVGSLLIWVFI--KASIPNAVIFSCIL 242 (587)
Q Consensus 171 -kl~~~~~~~flPlFF~~~Gl~~dl~~l~~~----~~~~~~~~l~~~a~~~-K~l~~~l~~~~~--~~~~~~a~~lglll 242 (587)
++..+...+|--.||++.|..++.+.++.. ..|. .+++.+..++. ++-.+++.-.+- =.+|||++.+|- .
T Consensus 290 s~v~~viD~lls~sfF~yfGaiipwsqFn~s~~gl~vwr-lvilsi~iif~RRip~v~l~kp~iPdikswkEALFvGh-F 367 (467)
T KOG4505|consen 290 SRVSEVIDLLLSLSFFLYFGAIIPWSQFNLSVEGLPVWR-LVILSITIIFIRRIPAVYLMKPLIPDIKSWKEALFVGH-F 367 (467)
T ss_pred ccHHHHHHHHHHHHHHHHhccccchhhcCCcccCchHHH-HHHHHHHHHHhcccceEEEeccCCcchhhHHHHHHhcc-C
Confidence 466665667778899999999999888632 3333 22232222222 333333321111 136899999887 4
Q ss_pred hhhhhHHHHHHHHhh
Q 043315 243 SLKGIMDLIFILRWR 257 (587)
Q Consensus 243 ~~kG~~~li~~~i~~ 257 (587)
.+.|.=.+..+..+.
T Consensus 368 GPIGVgAly~allar 382 (467)
T KOG4505|consen 368 GPIGVGALYYALLAR 382 (467)
T ss_pred CCccHHHHHHHHHHH
Confidence 777777776666554
No 44
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=96.78 E-value=0.062 Score=55.04 Aligned_cols=129 Identities=23% Similarity=0.247 Sum_probs=84.5
Q ss_pred HHHHHHHHHHhChhHHHHHHHhhhhcCCCCCch-hHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHH
Q 043315 133 ALVMGFLSDAIGTTYLLGALLMGLIIPPGPPLG-IAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQNGSRLISFEIIIG 211 (587)
Q Consensus 133 ~~~~a~lae~~G~~~ilGAFlaGL~lp~~~p~~-~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~~~~~~~~~~l~~ 211 (587)
.+..+.+++.++++.++|-.++|+++.... ++ -.-.+-++.+ ..+-+.++....|+++|++.+... +.. ...+..
T Consensus 4 a~~~~~l~~~l~lP~~v~~il~GillGp~~-lg~i~~~~~~~~l-~~igl~~llF~~Gl~~d~~~l~~~-~~~-~~~~~~ 79 (273)
T TIGR00932 4 AVLAVPLSRRLGIPSVLGYLLAGVLIGPSG-LGLISNVEGVNHL-AEFGVILLMFLIGLELDLERLWKL-RKA-AFGVGV 79 (273)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhCccc-ccCCCChHHHHHH-HHHHHHHHHHHHHhCCCHHHHHHH-HHH-HHHHHH
Confidence 456678899999999999999999997431 11 0111234544 556677888899999999887543 111 222222
Q ss_pred HHHHHH-HHHHHHHHHHhCCChHHHHHHHHHhhhhhhHHHHHHHHhhhcCCCCHHHH
Q 043315 212 ASYLGK-FVGSLLIWVFIKASIPNAVIFSCILSLKGIMDLIFILRWRIRKLIDKDTF 267 (587)
Q Consensus 212 ~a~~~K-~l~~~l~~~~~~~~~~~a~~lglll~~kG~~~li~~~i~~~~gli~~~~f 267 (587)
..++.- ++.++....+++.++.+++.+|..+++-. .-+++.+-.+.++++.+.-
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts--~~v~~~il~~~~~~~~~~g 134 (273)
T TIGR00932 80 LQVLVPGVLLGLLLGHLLGLALGAAVVIGIILALSS--TAVVVQVLKERGLLKTPFG 134 (273)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhH--HHHHHHHHHHcCcccChHH
Confidence 222233 44445566788999999999999988653 3445556667777665543
No 45
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=96.44 E-value=0.041 Score=57.90 Aligned_cols=137 Identities=12% Similarity=-0.014 Sum_probs=75.2
Q ss_pred HHHHhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 043315 150 GALLMGLIIPPGPPLGIAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQNGSRLISFEIIIGASYLGKFVGSLLIWVFIK 229 (587)
Q Consensus 150 GAFlaGL~lp~~~p~~~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~~~~~~~~~~l~~~a~~~K~l~~~l~~~~~~ 229 (587)
.|++.|..+.+- .+.+.+... .+-.+++|++-...|.++|+..+....+.- +++.+..++......+...|+++
T Consensus 178 lplliG~~lgnl---~~~l~~~~~-~Gi~~lLp~~~~~lG~~l~lq~i~~~G~~G--ilL~~~~~~~t~~~~~~~~Rl~~ 251 (326)
T PRK05274 178 LPLLVGFILGNL---DPELRQFLG-KAVPVLIPFFAFALGNGIDLGTIITAGLSG--ILLGVAVVAVTGIPLYLADRLIG 251 (326)
T ss_pred HHHHHHHHHHhH---HHhhHHHhc-CCcEEEHHHHHHHHhcceeHhHHHhcCCcc--hhhhhhHhhccchhhHhHhheee
Confidence 688899988874 333333333 356779999999999999998875443321 22223333444554555568775
Q ss_pred CChH---HHHHHHHHhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 043315 230 ASIP---NAVIFSCILSLKGIMDLIFILRWRIRKLIDKDTFTLAMLTHTAVTAVRTPLISLYYTPYRK 294 (587)
Q Consensus 230 ~~~~---~a~~lglll~~kG~~~li~~~i~~~~gli~~~~f~~lvl~~lvtt~i~~plv~~ly~p~~~ 294 (587)
.... -+...+..-+.-|-..++...-. .+-..++.-..+..++++++++.|.+..+++|+.++
T Consensus 252 ~~~g~~g~a~~ttaG~aic~pAAvaa~~p~--~~~~~~~at~~VA~~vivt~il~P~l~~~~~k~~~~ 317 (326)
T PRK05274 252 GGNGVAGAAAGSTAGNAVATPAAVAAADPS--FAPFAPAATAQVAAAVIVTAILAPILTAWWSKRVGK 317 (326)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHHHhhccc--cccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4332 22222222222222222222222 233444444445555667777777777777764433
No 46
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.37 E-value=0.12 Score=59.43 Aligned_cols=126 Identities=17% Similarity=0.065 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHhChhHHHHHHHhhhhcCCC-CCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHH
Q 043315 132 GALVMGFLSDAIGTTYLLGALLMGLIIPPG-PPLGIAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQNGSRLISFEIII 210 (587)
Q Consensus 132 ~~~~~a~lae~~G~~~ilGAFlaGL~lp~~-~p~~~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~~~~~~~~~~l~ 210 (587)
...++..++..+|+++++|=.++|+++... ...-. -.+.++.+ ..+-+.++...+|+++|++.++.. ... ++.+-
T Consensus 16 ~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~-~~~~i~~l-aelGvv~LlF~iGLEl~~~~l~~~-~~~-~~~~g 91 (621)
T PRK03562 16 AAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVT-DVESILHF-AEFGVVLMLFVIGLELDPQRLWKL-RRS-IFGGG 91 (621)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCC-CHHHHHHH-HHHHHHHHHHHHHhCcCHHHHHHH-HHH-HHHHH
Confidence 667777889999999999999999999642 11111 12345555 677788888999999999887532 110 11111
Q ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhhhhhHHHHHHHHhhhcCCCC
Q 043315 211 GASYLGKFVGSLLIWVFIKASIPNAVIFSCILSLKGIMDLIFILRWRIRKLID 263 (587)
Q Consensus 211 ~~a~~~K~l~~~l~~~~~~~~~~~a~~lglll~~kG~~~li~~~i~~~~gli~ 263 (587)
..-++.-++..+..+.++|+++..++.+|..++.-.. .+ ...+-.+.|.++
T Consensus 92 ~~qv~~~~~~~~~~~~~~g~~~~~al~ig~~la~SSt-ai-v~~~L~e~~~l~ 142 (621)
T PRK03562 92 ALQMVACGGLLGLFCMLLGLRWQVALLIGLGLALSST-AI-AMQAMNERNLMV 142 (621)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH-HH-HHHHHHHhcccc
Confidence 1111222233344567789999999999988865433 22 244444555544
No 47
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=96.25 E-value=0.088 Score=56.71 Aligned_cols=256 Identities=12% Similarity=0.110 Sum_probs=151.4
Q ss_pred CCchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHH-----HHHhhHHHH-HHHhhccccCC
Q 043315 1 MDTTRILQVAKNALSVGMPCFLLSFNFTISLTLVLRENIPGMVGGSFPFLLSMV-----LSLNYFPVV-HALSELNLLTS 74 (587)
Q Consensus 1 mD~~~l~~~~~~a~~ig~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~l~lg~~-----ls~Ts~pVv-~iL~el~ll~s 74 (587)
||-+.++|...|-+..-+.+.+..+++|..++.+++.... ...+++.+- ...-+.|.. -.=+-.+.-..
T Consensus 111 m~RklLika~~r~~p~il~g~~~a~~~g~lvG~l~G~~~~-----~~i~~i~lPIMgGG~GaGavPLS~~Ya~~~g~~~~ 185 (414)
T PF03390_consen 111 MNRKLLIKAFARFIPPILGGVIGAFLLGGLVGMLFGYSFK-----DAIFYIVLPIMGGGMGAGAVPLSQIYAEALGQDAE 185 (414)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-----HHHHHHHhhhcCCCccccHhHHHHHHHHHhCCCHH
Confidence 6778888888888888888888888888888888875421 222222221 112234433 22233444455
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhh---c--C----hhHHHHHHHHHcCCCCcch--hHHHHHH---HHHHHH-HH
Q 043315 75 DLSQLAISCAILHKTIGWLSVALTSAIIK---S--D----KGPAVCWIIKINPEGKPVK--EIYVLAI---GALVMG-FL 139 (587)
Q Consensus 75 ~~Grlals~avi~Di~~~ill~i~~~~~~---s--~----~rp~~~~l~~r~~~g~~~~--e~~i~~i---~~~~~a-~l 139 (587)
++=..++.+.++..+++++.-+++..+.+ . + .|.--....+...+.++.+ +.-...+ ..+..+ .+
T Consensus 186 ~~~s~~ipa~~lgNi~AIi~aglL~~lg~~~P~ltGnG~L~~~~~~~~~~~~~~~~~~~~~~~g~Gllla~~~y~~G~ll 265 (414)
T PF03390_consen 186 EYFSQLIPALTLGNIFAIIFAGLLNKLGKKKPKLTGNGQLLKGGDDEEEEAKKKEKPIDFSDMGAGLLLACSFYILGVLL 265 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCceEEeCCccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 55566788888888888887776665542 0 1 1111000000111112221 1111111 333333 45
Q ss_pred HHHhChhHHHHHHHhhhhcCCC---CCchhHHHHHHHHHHHHHHHHHHHHHhccc-ccccccccc-hhHHHHHHHHHHHH
Q 043315 140 SDAIGTTYLLGALLMGLIIPPG---PPLGIAIIERFELVIFHFFLPFFYIRIGQY-TNLSSIQNG-SRLISFEIIIGASY 214 (587)
Q Consensus 140 ae~~G~~~ilGAFlaGL~lp~~---~p~~~~l~ekl~~~~~~~flPlFF~~~Gl~-~dl~~l~~~-~~~~~~~~l~~~a~ 214 (587)
...+++|...---++=.++.-. |+.-++=..+...|...-|.|...+-+|+. +|++.+... ++. .+++++..+
T Consensus 266 ~~~i~ih~~a~mIi~~~i~K~~~lvP~~~e~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t~~--~vv~~~~~V 343 (414)
T PF03390_consen 266 SKLIGIHAYAWMIILVAIVKAFGLVPESLEEGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAFTPQ--YVVIVLATV 343 (414)
T ss_pred HHhcCCcHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHhCHH--HHHHHHHHH
Confidence 5677888765544433333322 222233344566666777788888888988 999887643 444 345566667
Q ss_pred HHHHHHHHHHHHHhCCChHHH-HHHHHHhhhhhhH-HHHHHHHhhhcCCCC
Q 043315 215 LGKFVGSLLIWVFIKASIPNA-VIFSCILSLKGIM-DLIFILRWRIRKLID 263 (587)
Q Consensus 215 ~~K~l~~~l~~~~~~~~~~~a-~~lglll~~kG~~-~li~~~i~~~~gli~ 263 (587)
++-.+++++.+++.|+-+-|+ +..|+-|+.+|-. |+++.+.+.+..+++
T Consensus 344 l~~~~~a~~vG~l~g~YPvEsAItaGLC~an~GGtGDvAVLsAa~RM~Lmp 394 (414)
T PF03390_consen 344 LGAVIGAFLVGKLVGFYPVESAITAGLCMANMGGTGDVAVLSAANRMELMP 394 (414)
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHhhhcccCCCCCCcchheehhhhccccc
Confidence 788899999999999876664 5556577666655 899999888888876
No 48
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.09 E-value=0.22 Score=57.10 Aligned_cols=125 Identities=18% Similarity=0.113 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHhChhHHHHHHHhhhhcCCC-CCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccc-hhHHHHHHH
Q 043315 132 GALVMGFLSDAIGTTYLLGALLMGLIIPPG-PPLGIAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQNG-SRLISFEII 209 (587)
Q Consensus 132 ~~~~~a~lae~~G~~~ilGAFlaGL~lp~~-~p~~~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~~-~~~~~~~~l 209 (587)
...++..++..+|+++++|=.++|+++... ...-.. .+.++.+ ..+=+.++...+|+++|++.+... ...+ .+
T Consensus 16 ~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~~-~~~i~~l-aelGvv~LLF~iGLel~~~~l~~~~~~~~---~~ 90 (601)
T PRK03659 16 AAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFISD-VDEILHF-SELGVVFLMFIIGLELNPSKLWQLRRSIF---GV 90 (601)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCCc-HHHHHHH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HH
Confidence 555666788899999999999999999642 111111 1335544 566677788889999999887532 1111 11
Q ss_pred HHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhhhhhHHHHHHHHhhhcCCCC
Q 043315 210 IGASYLGKFVGSLLIWVFIKASIPNAVIFSCILSLKGIMDLIFILRWRIRKLID 263 (587)
Q Consensus 210 ~~~a~~~K~l~~~l~~~~~~~~~~~a~~lglll~~kG~~~li~~~i~~~~gli~ 263 (587)
....++.-++.......++|+++..++.+|+.++.-.. .+ ...+-.+.|.++
T Consensus 91 g~~~v~~t~~~~~~~~~~~g~~~~~a~~~g~~la~SST-ai-v~~iL~e~~~~~ 142 (601)
T PRK03659 91 GAAQVLLSAAVLAGLLMLTDFSWQAAVVGGIGLAMSST-AM-ALQLMREKGMNR 142 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH-HH-HHHHHHHccccc
Confidence 11111111112222345679999999988876654221 22 234444555444
No 49
>PRK05326 potassium/proton antiporter; Reviewed
Probab=96.07 E-value=0.11 Score=59.19 Aligned_cols=130 Identities=15% Similarity=0.078 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHhChhHHHHHHHhhhhcCCCCCchh--HHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHH
Q 043315 132 GALVMGFLSDAIGTTYLLGALLMGLIIPPGPPLGI--AIIERFELVIFHFFLPFFYIRIGQYTNLSSIQNGSRLISFEII 209 (587)
Q Consensus 132 ~~~~~a~lae~~G~~~ilGAFlaGL~lp~~~p~~~--~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~~~~~~~~~~l 209 (587)
+..+++.++..+|+..++|=.++|+++.....-.- .-.+-.+. ...+.+++.....|+++|++.+... +.. +..+
T Consensus 17 l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~~~~~~~~~-i~~l~L~~iLF~~Gl~~~~~~l~~~-~~~-~~~l 93 (562)
T PRK05326 17 LSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAYL-VGNLALAVILFDGGLRTRWSSFRPA-LGP-ALSL 93 (562)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcccCcHHHHHH-HHHHHHHHHHHcCccCCCHHHHHHH-HHH-HHHH
Confidence 55566678889999999999999999987421101 11122333 4678899999999999999887643 222 2222
Q ss_pred HHHHHHH-HHHHHHHHHHHhCCChHHHHHHHHHhhhhhhHHHHHHHHhhhcCC-CCHHH
Q 043315 210 IGASYLG-KFVGSLLIWVFIKASIPNAVIFSCILSLKGIMDLIFILRWRIRKL-IDKDT 266 (587)
Q Consensus 210 ~~~a~~~-K~l~~~l~~~~~~~~~~~a~~lglll~~kG~~~li~~~i~~~~gl-i~~~~ 266 (587)
..+.++. =.+.++...+++++++.+++.+|.++++.... ++..+-.+.|+ ++++.
T Consensus 94 a~~gv~~t~~~~g~~~~~l~g~~~~~alllgai~s~Td~a--~v~~iL~~~~l~l~~~v 150 (562)
T PRK05326 94 ATLGVLITAGLTGLFAHWLLGLDWLEGLLLGAIVGSTDAA--AVFSLLRGKGLNLKERV 150 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCchH--HHHHHHhccCCCcchhH
Confidence 2222222 23334455667899999999999988876544 33344455563 44443
No 50
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=96.04 E-value=0.39 Score=50.68 Aligned_cols=255 Identities=15% Similarity=0.119 Sum_probs=136.2
Q ss_pred CCchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHhhHHHH-HHHhhccccCCchHHH
Q 043315 1 MDTTRILQVAKNALSVGMPCFLLSFNFTISLTLVLRENIPGMVGGSFPFLLSMVLSLNYFPVV-HALSELNLLTSDLSQL 79 (587)
Q Consensus 1 mD~~~l~~~~~~a~~ig~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts~pVv-~iL~el~ll~s~~Grl 79 (587)
||-+.+.|...|-+..-+.+++.-.+.|.+++..++....+.........+|--...-+.|.- -.=+-.+.-..+.=..
T Consensus 128 mnRklLIk~~~~~i~~il~g~v~A~~~g~lVG~~~G~~~~d~~m~~vlPIM~GG~GaGavPLS~iYs~itg~s~~~~~s~ 207 (438)
T COG3493 128 MNRKLLIKSLKRYIPPILAGMVGAAAVGILVGLLFGLSFQDTMMYVVLPIMGGGMGAGAVPLSEIYSSITGGSQEEYFSQ 207 (438)
T ss_pred ccHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCChHHeeeeEEeeeccCCCCCCcccHHHHHHHHcCCCHHHHHHH
Confidence 455666677777777777777777777777777776543211000000011111111122222 1111234455666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh--c---C----hh-----HHHHHHHHHcCCCCc-chhHHHHHH---HHHHHH-HHH
Q 043315 80 AISCAILHKTIGWLSVALTSAIIK--S---D----KG-----PAVCWIIKINPEGKP-VKEIYVLAI---GALVMG-FLS 140 (587)
Q Consensus 80 als~avi~Di~~~ill~i~~~~~~--s---~----~r-----p~~~~l~~r~~~g~~-~~e~~i~~i---~~~~~a-~la 140 (587)
++.+..+..+++++.-+++--+.+ . + +| +.-... .++++. .++.-...+ .+|..+ .+.
T Consensus 208 lipal~igNvfAIi~aall~~iG~K~psltGnG~Lv~~~~~~~~~ee~---~~~~k~d~~~~g~G~llA~~lf~~g~il~ 284 (438)
T COG3493 208 LIPALTIGNVFAIICAALLNKIGKKKPSLTGNGELVRSKSKEATEEEL---EKEGKLDLKLMGAGMLLACTLFMAGGILG 284 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCccCCceEEeccccchhhhhh---hhccCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999998887766655441 1 1 44 333332 223332 222222222 444444 445
Q ss_pred HHhChhHHHHHH--Hhhh--hcCCCCCchhHHHH---HHHH-HHHHHHHHHHHHHhccc-ccccccccc-hhHHHHHHHH
Q 043315 141 DAIGTTYLLGAL--LMGL--IIPPGPPLGIAIIE---RFEL-VIFHFFLPFFYIRIGQY-TNLSSIQNG-SRLISFEIII 210 (587)
Q Consensus 141 e~~G~~~ilGAF--laGL--~lp~~~p~~~~l~e---kl~~-~~~~~flPlFF~~~Gl~-~dl~~l~~~-~~~~~~~~l~ 210 (587)
+.+++. |++ +.=+ ++.-..-..++++| ++.. +.+.+.-|+.+ .+|.. +|+..+.+. +|.. ++++
T Consensus 285 kf~~~P---~~va~MIil~a~lk~~nlvp~~i~~GA~~l~~F~sk~~t~~Lm~-giGv~ytdl~ev~~alt~~~--vii~ 358 (438)
T COG3493 285 KFIGLP---GPVAFMIILVAILKAANLVPKEIEEGAKQLSQFFSKNLTWPLMA-GIGVAYTDLNEVAAALTWQN--VIIA 358 (438)
T ss_pred HhhcCC---chHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHhhHHHHHH-hhhhccccHHHHHHHhchhH--HHHH
Confidence 677765 444 1111 11111011122222 3333 33445555554 45555 888777543 5543 3344
Q ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHH-HHhhhhhhH-HHHHHHHhhhcCCCCH
Q 043315 211 GASYLGKFVGSLLIWVFIKASIPNAVIFS-CILSLKGIM-DLIFILRWRIRKLIDK 264 (587)
Q Consensus 211 ~~a~~~K~l~~~l~~~~~~~~~~~a~~lg-lll~~kG~~-~li~~~i~~~~gli~~ 264 (587)
+...++-.+++++.+|+.|+-+-|+-..+ +.|+.+|.. |+++.+.+-..++++-
T Consensus 359 ~~vVl~~i~~~~f~grl~~~YPVEaAI~aglC~a~~GGtGDvaVLsAa~RM~LmpF 414 (438)
T COG3493 359 LSVVLGAILGGAFVGRLMGFYPVEAAITAGLCMANMGGTGDVAVLSAADRMELMPF 414 (438)
T ss_pred HHHHHHHHHHHHHHHHHhcCCchHHHHHHhHHhcCCCCCCchHHhhhcchhccccH
Confidence 44567788899999999998776655554 889887765 8888888888888763
No 51
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=95.98 E-value=0.28 Score=53.29 Aligned_cols=135 Identities=22% Similarity=0.245 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHhChhHHHHHHHhhhhcCC-CC---CchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHH
Q 043315 132 GALVMGFLSDAIGTTYLLGALLMGLIIPP-GP---PLGIAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQNGSRLISFE 207 (587)
Q Consensus 132 ~~~~~a~lae~~G~~~ilGAFlaGL~lp~-~~---p~~~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~~~~~~~~~ 207 (587)
.+...+.+.+.+|+++++|=.++|+++.. +. ...++..+-+..+ =+-+....+|+.+|++.+....... ..
T Consensus 17 ~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~~~~~~~i~~lael----Gvi~LlF~~GLE~~~~~l~~~~~~~-~~ 91 (397)
T COG0475 17 VAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLIIESSEIIELLAEL----GVVFLLFLIGLEFDLERLKKVGRSV-GL 91 (397)
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHhcCcccccccCCchHHHHHHHHH----hHHHHHHHHHHCcCHHHHHHhchhh-hh
Confidence 66677799999999999999999999997 21 1223333334444 3445567899999999886431110 11
Q ss_pred HHHHHHHHHHHHHH--HHHHHHhCCChHHHHHHHHHhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHH
Q 043315 208 IIIGASYLGKFVGS--LLIWVFIKASIPNAVIFSCILSLKGIMDLIFILRWRIRKLIDKDTFTLAMLTH 274 (587)
Q Consensus 208 ~l~~~a~~~K~l~~--~l~~~~~~~~~~~a~~lglll~~kG~~~li~~~i~~~~gli~~~~f~~lvl~~ 274 (587)
....+.+..=++.+ +... ++++++++++.+|..+..-.. =+++.+..|.|..+.+.....+...
T Consensus 92 ~~~~~~~~~~~~l~~~~~~~-~~g~~~~~al~lg~~l~~sS~--~i~~~iL~e~~~~~~~~g~~~l~~~ 157 (397)
T COG0475 92 GVAQVGLTAPFLLGLLLLLG-ILGLSLIAALFLGAALALSST--AIVLKILMELGLLKTREGQLILGAL 157 (397)
T ss_pred hHHHHHHHHHHHHHHHHHHH-HhccChHHHHHHHHHHHHHHH--HHHHHHHHHhccccchHHHHHHHHH
Confidence 11112222222222 2223 589999999999998875332 2444555666666655544433333
No 52
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.96 E-value=0.25 Score=56.15 Aligned_cols=129 Identities=16% Similarity=0.168 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHhChhHHHHHHHhhhhcCCCC-CchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHH
Q 043315 132 GALVMGFLSDAIGTTYLLGALLMGLIIPPGP-PLGIAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQNGSRLISFEIII 210 (587)
Q Consensus 132 ~~~~~a~lae~~G~~~ilGAFlaGL~lp~~~-p~~~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~~~~~~~~~~l~ 210 (587)
..++++.++..+|++.++|=.++|+++.... ..-+. .+-++.+ ..+=+-++...+|+++|++.+.... .. .....
T Consensus 17 ~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~~-~~~~~~l-a~lGli~llF~~Gle~d~~~l~~~~-~~-~~~~~ 92 (558)
T PRK10669 17 LAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVAD-TKLAPEL-AELGVILLMFGVGLHFSLKDLMAVK-SI-AIPGA 92 (558)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhhCccccccccc-hHHHHHH-HHHHHHHHHHHhHhcCCHHHHHHHh-hH-HHHHH
Confidence 6667778888999999999999999996531 11111 1334444 5566667778889999998775321 11 11111
Q ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhhhhhHHHHHHHHhhhcCCCCHHH
Q 043315 211 GASYLGKFVGSLLIWVFIKASIPNAVIFSCILSLKGIMDLIFILRWRIRKLIDKDT 266 (587)
Q Consensus 211 ~~a~~~K~l~~~l~~~~~~~~~~~a~~lglll~~kG~~~li~~~i~~~~gli~~~~ 266 (587)
...++.=++.+++...++++++.+++.+|..++.-.. .+++.+-.+.|.++.+.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~al~lg~~ls~tS~--~vv~~~L~e~~~l~s~~ 146 (558)
T PRK10669 93 IAQIAVATLLGMALSAVLGWSLMTGIVFGLCLSTAST--VVLLRALEERQLIDSQR 146 (558)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH--HHHHHHHHhcCcccCcc
Confidence 1112222334445566789999999999988877333 45566677788777644
No 53
>COG2855 Predicted membrane protein [Function unknown]
Probab=95.68 E-value=0.093 Score=54.83 Aligned_cols=117 Identities=16% Similarity=0.144 Sum_probs=89.8
Q ss_pred HHHHHhChhHHHHHHHhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHH
Q 043315 138 FLSDAIGTTYLLGALLMGLIIPPGPPLGIAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQNGSRLISFEIIIGASYLGK 217 (587)
Q Consensus 138 ~lae~~G~~~ilGAFlaGL~lp~~~p~~~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~~~~~~~~~~l~~~a~~~K 217 (587)
...+..|+++.+=|.++|+++...++.+.+...-++.- ...++++=.+.-|++++++.+.+-.+. .+.+.+..+.+-
T Consensus 30 ~~~~~~~l~al~lAIllGi~l~~l~~~~~~~~~GI~fs-~k~LLr~gIvLlG~~ltl~~i~~~G~~--~v~~~~~~l~~t 106 (334)
T COG2855 30 FFSIHLGLSALTLAILLGILLGILPQIPAQTSAGITFS-SKKLLRLGIVLLGFRLTLSDIADVGGS--GVLIIAITLSST 106 (334)
T ss_pred HHhhhcCchHHHHHHHHHHHHhccccchhhhccchhhh-HHHHHHHHHHHHcceeeHHHHHHcCcc--HHHHHHHHHHHH
Confidence 44555667789999999999997766666666667754 788999999999999999988653332 233444555667
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHhhhhhhHHHHHHHHhh
Q 043315 218 FVGSLLIWVFIKASIPNAVIFSCILSLKGIMDLIFILRWR 257 (587)
Q Consensus 218 ~l~~~l~~~~~~~~~~~a~~lglll~~kG~~~li~~~i~~ 257 (587)
++.+++.++++|++++.+..+|..-+--|.-.++..+--.
T Consensus 107 ~~~~~~lg~~lgld~~~a~Lia~GssICGasAiaA~~pvi 146 (334)
T COG2855 107 FLFAYFLGKLLGLDKKLALLIAAGSSICGASAIAATAPVI 146 (334)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHccchhhHHHHHHHhCCcC
Confidence 7778888889999999999999999988988877665433
No 54
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=95.59 E-value=0.35 Score=50.61 Aligned_cols=149 Identities=15% Similarity=0.051 Sum_probs=100.3
Q ss_pred HhChhHHHHHHHhhhhcCC-CCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHH
Q 043315 142 AIGTTYLLGALLMGLIIPP-GPPLGIAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQNGSRLISFEIIIGASYLGKFVG 220 (587)
Q Consensus 142 ~~G~~~ilGAFlaGL~lp~-~~p~~~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~~~~~~~~~~l~~~a~~~K~l~ 220 (587)
..++++.+=|.+.|+++.+ .....+...+-++.- ...++++=-+..|.++++..+.+..+.. . ++.++.+..=+..
T Consensus 23 ~~~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~-~k~~Lr~gIVLlG~~l~~~~i~~~G~~~-~-~~~~~~v~~~~~~ 99 (305)
T PF03601_consen 23 LPGLGALLIAILLGMLIGNLFFGLPARFKPGIKFS-SKKLLRLGIVLLGFRLSFSDILALGWKG-L-LIIIIVVILTFLL 99 (305)
T ss_pred ccCccHHHHHHHHHHHHhhhccCCcHHHHhHHHHH-HHHHHHHHHHHHCccccHHHHHHhCccH-H-HHHHHHHHHHHHH
Confidence 4577888889999999998 545556666666653 6689999999999999998876543322 2 2233333334444
Q ss_pred HHHHH-HHhCCChHHHHHHHHHhhhhhhHHHHHHHHhhhcCCCCHHH---HHHHHHHHHHHHHHHHHHHHHhccccccc
Q 043315 221 SLLIW-VFIKASIPNAVIFSCILSLKGIMDLIFILRWRIRKLIDKDT---FTLAMLTHTAVTAVRTPLISLYYTPYRKL 295 (587)
Q Consensus 221 ~~l~~-~~~~~~~~~a~~lglll~~kG~~~li~~~i~~~~gli~~~~---f~~lvl~~lvtt~i~~plv~~ly~p~~~~ 295 (587)
+++.+ |++|++.+.+..+|...+.-|.-.++...-..+.+ +++. .....+...+..++.|.+.+++.-+...+
T Consensus 100 ~~~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a~--~~~~a~ava~V~lfg~vam~~~P~l~~~l~l~~~~~ 176 (305)
T PF03601_consen 100 TYWLGRRLFGLDRKLAILIAAGTSICGASAIAATAPVIKAK--EEDVAYAVATVFLFGTVAMFLYPLLGHALGLSPQQF 176 (305)
T ss_pred HHHHHHHHhCCCHHHHHHHHhhcccchHHHHHHHcccccCC--CCceeeeehHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 45445 99999999999999999999998888777555544 2222 22233344444556677777665554444
No 55
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=95.01 E-value=0.6 Score=49.42 Aligned_cols=152 Identities=11% Similarity=-0.009 Sum_probs=94.1
Q ss_pred HHHHHHHHHHH-----hChhHHHHHHHhhhhcCCCC--CchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHH
Q 043315 132 GALVMGFLSDA-----IGTTYLLGALLMGLIIPPGP--PLGIAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQNGSRLI 204 (587)
Q Consensus 132 ~~~~~a~lae~-----~G~~~ilGAFlaGL~lp~~~--p~~~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~~~~~~ 204 (587)
+.+.+.++++. .|+++.+=|.+.|+++.+.. +..+....-++ +....++-+=-+..|.++++..+....+.
T Consensus 13 ia~~a~~l~~~~~~~~~~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~-f~~k~lLr~gIVLlG~~l~~~~i~~~G~~- 90 (335)
T TIGR00698 13 ILLLAGAAGSIINLADPALSALFLAILLGMVAGNTIYPQRDEEKKRGVL-FAKPFLLRIGITLYGFRLTFPYIADVGPN- 90 (335)
T ss_pred HHHHHHHHHhhhhhccCCCcHHHHHHHHHHHHhccccccchhhccchHH-HHHHHHHHHHHHHHCccccHHHHHHhhHH-
Confidence 44444445443 47888888999999998842 22333333344 44678888899999999999887543332
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHhCCChHHHHHHHHHhhhhhhHHHHHHHHhhhcCCCCHHH-H--HHHHHHHHHHHHH
Q 043315 205 SFEIIIGASYLGKFVG-SLLIWVFIKASIPNAVIFSCILSLKGIMDLIFILRWRIRKLIDKDT-F--TLAMLTHTAVTAV 280 (587)
Q Consensus 205 ~~~~l~~~a~~~K~l~-~~l~~~~~~~~~~~a~~lglll~~kG~~~li~~~i~~~~gli~~~~-f--~~lvl~~lvtt~i 280 (587)
.+.+.++...+=++. .++..|++|++++.+..+|...+--|.-.++...-..+.+ +++. + +..++...+..++
T Consensus 91 -~l~~~~~~v~~~~~~~~~~g~k~l~l~~~~~~Lia~GtsICGaSAi~A~a~~i~A~--~~~~a~ava~V~lfgt~am~l 167 (335)
T TIGR00698 91 -EIVADTLILTSTFFLTVFLGSSRLKLDKQMSILLGAGSSICGAAAVAAIEPVIKAE--KEKVSVAIAIVVIFGTTGIFL 167 (335)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHcchhHHHHHHHHHhccccCCC--ccceeeeehHHHHHHHHHHHH
Confidence 222223333334444 4555589999999999999999999988887766444432 2222 1 2233333444455
Q ss_pred HHHHHHHh
Q 043315 281 RTPLISLY 288 (587)
Q Consensus 281 ~~plv~~l 288 (587)
.|++.+++
T Consensus 168 ~P~l~~~l 175 (335)
T TIGR00698 168 YPSIYHYA 175 (335)
T ss_pred HHHHHHHH
Confidence 56666543
No 56
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=94.90 E-value=2.6 Score=45.10 Aligned_cols=216 Identities=17% Similarity=0.183 Sum_probs=118.5
Q ss_pred CCchHHHHhhhhHHHHHHHHHHHHHH---HHHHHHHHHHhhcCCCCCChHHHHHHHHHHH-----hhHHHHHHHhhcccc
Q 043315 1 MDTTRILQVAKNALSVGMPCFLLSFN---FTISLTLVLRENIPGMVGGSFPFLLSMVLSL-----NYFPVVHALSELNLL 72 (587)
Q Consensus 1 mD~~~l~~~~~~a~~ig~~~~~ip~~---~g~~~~~~l~~~~~~~~~~~~~l~lg~~ls~-----Ts~pVv~iL~el~ll 72 (587)
.+++.+||.||+..+.-.....+-.. +|..++.+++-. +...+.. -+.|. |+-+.-+.++|+|.
T Consensus 83 a~~~~lkkgGk~l~if~~~a~~l~~~Qn~igi~la~~lgid------pl~glla-gsIsl~GGHGtaAA~~~~f~~~G~- 154 (404)
T COG0786 83 ASFKLLKKGGKKLAIFLATAAGLAVLQNFIGIGLAKLLGLD------PLIGLLA-GSISLVGGHGTAAAWGPTFEDLGA- 154 (404)
T ss_pred cchhHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHcCcc------HHHHHHh-cceeecCCCchHHHHHHHHHhcCC-
Confidence 36788999998877655444443322 444444444321 1111111 12222 34333377888874
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHc---CCC--C-----------------cch-hHH--
Q 043315 73 TSDLSQLAISCAILHKTIGWLSVALTSAIIKSDKGPAVCWIIKIN---PEG--K-----------------PVK-EIY-- 127 (587)
Q Consensus 73 ~s~~Grlals~avi~Di~~~ill~i~~~~~~s~~rp~~~~l~~r~---~~g--~-----------------~~~-e~~-- 127 (587)
.....+++++|-+.=+.+-++ ..|+.+|+++|+ |+. + ++. |..
T Consensus 155 -~~A~~va~A~ATfGlv~Ggli-----------Ggpva~~li~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~ 222 (404)
T COG0786 155 -EGATEVAMASATFGLVAGGLI-----------GGPVARWLIKKNKLKPDPTKDPDDDLVDVAFEGPKSTRLITAEPLIE 222 (404)
T ss_pred -cchHHHHHHHHHHHHHHhHhc-----------CcHHHHHHHHhcCCCCCCCCCchhhcchhhhhcccccccccHHHHHH
Confidence 445566676664433322211 478888888763 110 0 000 111
Q ss_pred -HHHH-HHHHHH-HHHHHhC-----hhHHHHHHHhhhhcCCCCCc--hhHHHHHHHHHHHHHHHHHHHHHhccccccccc
Q 043315 128 -VLAI-GALVMG-FLSDAIG-----TTYLLGALLMGLIIPPGPPL--GIAIIERFELVIFHFFLPFFYIRIGQYTNLSSI 197 (587)
Q Consensus 128 -i~~i-~~~~~a-~lae~~G-----~~~ilGAFlaGL~lp~~~p~--~~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l 197 (587)
+.++ +++..+ ++.++++ +....++++.|+++.+.-+. ..++.++.-+...++-+-+|.+..=|++.+..+
T Consensus 223 ~~~~i~i~~~vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~~~~~~v~~~~v~~ig~vsL~lflamALmSlkLweL 302 (404)
T COG0786 223 TLAIIAICLAVGKIINQLLKSLGLALPLFVMCLFVGVILRNILDLLKKYRVFRRAVDVIGNVSLSLFLAMALMSLKLWEL 302 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 2222 333333 4556655 56678999999999874211 112344444444677788888888888888777
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHH
Q 043315 198 QNGSRLISFEIIIGASYLGKFVGSLLIWVFIKASIPNAVI 237 (587)
Q Consensus 198 ~~~~~~~~~~~l~~~a~~~K~l~~~l~~~~~~~~~~~a~~ 237 (587)
.+-.... ++++.+-..+.-+...++..|.+|-++..+..
T Consensus 303 ~~l~lpl-~viL~vQ~i~m~lfa~fvtfr~mG~~YdAaV~ 341 (404)
T COG0786 303 ADLALPL-LVILAVQTIVMALFAIFVTFRLMGKNYDAAVL 341 (404)
T ss_pred HhccccH-HHHHHHHHHHHHHHHHHHHHHHhCcchhHHHH
Confidence 6433333 44444445555677777888898877666554
No 57
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=94.52 E-value=0.49 Score=42.76 Aligned_cols=75 Identities=19% Similarity=0.343 Sum_probs=51.8
Q ss_pred hhHHHHHHHhhhcCCceE-EEEEEEEecCCChHHHHHHHHhhcCCCEEEeccCCCccccc---cchhHHHhhccCCCcEE
Q 043315 398 TDRIMRAMTKFSKSSQVT-IQPFILIAPYKTMYESISKLAQDEFIPFIILPSHQSHKMQQ---GGGFNCKIQNCAPCSVG 473 (587)
Q Consensus 398 ~~~i~~~f~~~~~~~~v~-v~~~~~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~~~~~d---g~~~n~~vl~~apcsVg 473 (587)
.++..+..+.......+. +.....-. +--.+.|+..|.+..+|+|+++-+++..... | ++-++|++++||+|-
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~i~~~a~~~~adliV~G~~g~~~l~~~llG-svs~~v~~~~~~pVl 148 (154)
T COG0589 72 AEELLAEAKALAEAAGVPVVETEVVEG--SPSAEEILELAEEEDADLIVVGSRGRSGLSRLLLG-SVAEKVLRHAPCPVL 148 (154)
T ss_pred HHHHHHHHHHHHHHcCCCeeEEEEecC--CCcHHHHHHHHHHhCCCEEEECCCCCccccceeee-hhHHHHHhcCCCCEE
Confidence 355566555554444433 23333332 2335899999999999999999987776633 3 888999999999965
Q ss_pred EE
Q 043315 474 IY 475 (587)
Q Consensus 474 Il 475 (587)
++
T Consensus 149 vv 150 (154)
T COG0589 149 VV 150 (154)
T ss_pred EE
Confidence 54
No 58
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=94.49 E-value=0.44 Score=53.74 Aligned_cols=114 Identities=16% Similarity=0.221 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHhChhHHHHHHHhhhhcCCCCCch-hHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHH
Q 043315 132 GALVMGFLSDAIGTTYLLGALLMGLIIPPGPPLG-IAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQNGSRLISFEIII 210 (587)
Q Consensus 132 ~~~~~a~lae~~G~~~ilGAFlaGL~lp~~~p~~-~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~~~~~~~~~~l~ 210 (587)
.+.+...+++.+++.+.++-.++|+++...+... -.+... +...+++|+.....|+++|.+.+... +.. +..+.
T Consensus 9 ~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~~~~~~---~~~~~~Lp~lLF~~g~~~~~~~l~~~-~~~-i~~la 83 (525)
T TIGR00831 9 LATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEVPLDRE---IVLFLFLPPLLFEAAMNTDLRELREN-FRP-IALIA 83 (525)
T ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCCCCCHH---HHHHHHHHHHHHHHHhcCCHHHHHHH-HHH-HHHHH
Confidence 5555667788899999999999999887431111 011111 22457899999999999999988643 222 22222
Q ss_pred HHH-HHHHHHHHHHHHHHhCCChHHHHHHHHHhhhhhhHHH
Q 043315 211 GAS-YLGKFVGSLLIWVFIKASIPNAVIFSCILSLKGIMDL 250 (587)
Q Consensus 211 ~~a-~~~K~l~~~l~~~~~~~~~~~a~~lglll~~kG~~~l 250 (587)
+.. ++.-+++++....+.++|+..++.+|.++++...+..
T Consensus 84 ~~~vlit~~~v~~~~~~~~~l~~~~alllGails~TDpvav 124 (525)
T TIGR00831 84 FLLVVVTTVVVGFSLNWILGIPLALALILGAVLSPTDAVAV 124 (525)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCHHHH
Confidence 222 2223333444444679999999999999999876654
No 59
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=94.28 E-value=1.3 Score=52.87 Aligned_cols=66 Identities=17% Similarity=0.285 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhChhHHHHHHHhhhhcCCCC-CchhH---------HHHHHHHHHHHHHHHHHHHHhcccccccccc
Q 043315 132 GALVMGFLSDAIGTTYLLGALLMGLIIPPGP-PLGIA---------IIERFELVIFHFFLPFFYIRIGQYTNLSSIQ 198 (587)
Q Consensus 132 ~~~~~a~lae~~G~~~ilGAFlaGL~lp~~~-p~~~~---------l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~ 198 (587)
+.-+++++...+|+..++|=.++|+++.... ..-.. -.+-++.+ ..+-+-+|...+|+++|++.+.
T Consensus 54 ~a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~fp~~~~~~l~~l-a~lGlillmFliGLE~Dl~~lr 129 (832)
T PLN03159 54 TTRLLVFILKPFRQPRVISEILGGVILGPSVLGQSEVFANTIFPLRSVMVLETM-ANLGLLYFLFLVGVEMDISVIR 129 (832)
T ss_pred HHHHHHHHHHhcCCChhHHHHHHHHhcCHhhhCcChhhhhhcCCcchHHHHHHH-HHHHHHHHHHHHHHcCcHHHHH
Confidence 4445566777889999999999999986421 11011 11234444 4555666788899999998885
No 60
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=94.24 E-value=4 Score=43.90 Aligned_cols=91 Identities=14% Similarity=0.179 Sum_probs=53.8
Q ss_pred hhHHHHHHHhhhhcCCCC------CchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHH
Q 043315 145 TTYLLGALLMGLIIPPGP------PLGIAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQNGSRLISFEIIIGASYLGKF 218 (587)
Q Consensus 145 ~~~ilGAFlaGL~lp~~~------p~~~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~~~~~~~~~~l~~~a~~~K~ 218 (587)
+...++|++.|+++.+.. ...++..+++ .++.+=+|.+..=+.+++..+.+..... .+++++-.++.=+
T Consensus 247 lP~f~~ami~g~ivrn~~~~~~~~~id~~~i~~I----~~~sL~~fl~~almsl~l~~l~~~a~Pl-liil~~q~i~~~~ 321 (368)
T PF03616_consen 247 LPLFVGAMIVGIIVRNILDKTGKYKIDRKTIDRI----SGISLDLFLAMALMSLKLWVLADYALPL-LIILAVQTILMVL 321 (368)
T ss_pred CchHHHHHHHHHHHHHHHHHhCcccCCHHHHHHH----HHHHHHHHHHHHHHhccHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 456689999999987631 1233344444 5556666666666778887776543332 3233333344455
Q ss_pred HHHHHHHHHhCCChHHHHHHHHH
Q 043315 219 VGSLLIWVFIKASIPNAVIFSCI 241 (587)
Q Consensus 219 l~~~l~~~~~~~~~~~a~~lgll 241 (587)
...++..|.+|-++ |+..++..
T Consensus 322 f~~fv~fr~~gkdy-daavm~~G 343 (368)
T PF03616_consen 322 FAYFVTFRVMGKDY-DAAVMSAG 343 (368)
T ss_pred HHHHHhhhhhCCCh-hHHHHhhh
Confidence 56666778888775 55554433
No 61
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=93.69 E-value=1.5 Score=51.24 Aligned_cols=115 Identities=11% Similarity=0.102 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHhChhHHHHHHHhhhhcCCCC-CchhHHH----HHHHHHHHHHHHHHHHHHhcccccccccccchhHHHH
Q 043315 132 GALVMGFLSDAIGTTYLLGALLMGLIIPPGP-PLGIAII----ERFELVIFHFFLPFFYIRIGQYTNLSSIQNGSRLISF 206 (587)
Q Consensus 132 ~~~~~a~lae~~G~~~ilGAFlaGL~lp~~~-p~~~~l~----ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~~~~~~~~ 206 (587)
..+++.++.+.+.++..+-+.++|+++.... +.-.... +.+-.-+..+.+++-.+..|++++...+... |.. +
T Consensus 25 ~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~~~g~~d~i~leIteIvL~I~LFa~Gl~L~~~~Lrr~-wrs-V 102 (810)
T TIGR00844 25 FSLVSLFVKEKLYIGESMVASIFGLIVGPHCLNWFNPLSWGNTDSITLEISRILLCLQVFAVSVELPRKYMLKH-WVS-V 102 (810)
T ss_pred HHHHHHHHHhhcCCcHHHHHHHHHHHhhhhhhccCChhhcccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHh-HHH-H
Confidence 3444445555666787777888888776431 0111000 1111114667889999999999999887643 333 3
Q ss_pred HHHHHHHHHHHHHHHHHHHH-H-hCCChHHHHHHHHHhhhhhhH
Q 043315 207 EIIIGASYLGKFVGSLLIWV-F-IKASIPNAVIFSCILSLKGIM 248 (587)
Q Consensus 207 ~~l~~~a~~~K~l~~~l~~~-~-~~~~~~~a~~lglll~~kG~~ 248 (587)
..+++.+...-++++.+.+. + .+++|..++.+|.++++..-+
T Consensus 103 ~rLl~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDPV 146 (810)
T TIGR00844 103 TMLLVPVMTSGWLVIALFVWILVPGLNFPASLLMGACITATDPV 146 (810)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcHH
Confidence 33333333344444444444 3 499999999999999987754
No 62
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=91.67 E-value=2.6 Score=44.09 Aligned_cols=111 Identities=14% Similarity=0.253 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhhhhhHHHHHHHH
Q 043315 176 IFHFFLPFFYIRIGQYTNLSSIQNGSRLISFEIIIGASYLGKFVGSLLIWVFIKASIPNAVIFSCILSLKGIMDLIFILR 255 (587)
Q Consensus 176 ~~~~flPlFF~~~Gl~~dl~~l~~~~~~~~~~~l~~~a~~~K~l~~~l~~~~~~~~~~~a~~lglll~~kG~~~li~~~i 255 (587)
-+++|=|+-|.-+|..+|++.+....+.. ++-..+=+| +..+++.+.++|++.+|+-.+|.+=..-|-..+.+.+.
T Consensus 67 ~~~l~P~LIF~GIGAmtDFgpllanP~~~---llGaaAQ~G-if~t~~~A~~lGf~~~eAAsIgIIGgADGPtsIf~s~~ 142 (360)
T PF03977_consen 67 SNGLFPPLIFMGIGAMTDFGPLLANPKTL---LLGAAAQFG-IFATFLGAILLGFTPKEAASIGIIGGADGPTSIFVSSK 142 (360)
T ss_pred hcchhhHHHHHHHhHHHhhHHHHhCHHHH---HHHHHHHHh-HHHHHHHHHHhCCCHHHhhHhhhcccCCCcHHHHHHHh
Confidence 36899999999999999998876443322 222233333 34566677888999999999999988888888877663
Q ss_pred hhh--cCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 043315 256 WRI--RKLIDKDTFTLAMLTHTAVTAVRTPLISLYYTPYRK 294 (587)
Q Consensus 256 ~~~--~gli~~~~f~~lvl~~lvtt~i~~plv~~ly~p~~~ 294 (587)
--. .|-|.-..|+- |+++ =.+-||++|.+..+++|
T Consensus 143 LAp~LlgpIaVaAYsY---MaLv-PiiqPpimklLttkkeR 179 (360)
T PF03977_consen 143 LAPHLLGPIAVAAYSY---MALV-PIIQPPIMKLLTTKKER 179 (360)
T ss_pred hhHHHHHHHHHHHHHH---HHHH-hhhhhHHHHHhcCHHHH
Confidence 321 12222333433 3333 46789999998765444
No 63
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=91.04 E-value=5.4 Score=42.31 Aligned_cols=113 Identities=17% Similarity=0.066 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHhcccccccccccchhHHHHHHH-HHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhhhhhHHHHH
Q 043315 174 LVIFHFFLPFFYIRIGQYTNLSSIQNGSRLISFEII-IGASYLGKFVGSLLIWVFIKASIPNAVIFSCILSLKGIMDLIF 252 (587)
Q Consensus 174 ~~~~~~flPlFF~~~Gl~~dl~~l~~~~~~~~~~~l-~~~a~~~K~l~~~l~~~~~~~~~~~a~~lglll~~kG~~~li~ 252 (587)
.+.+++|=|+-|.-+|..+|++.+....+.. ++ -..+=+| +..+++.+.++|++.+|+-.+|.+=.+-|-..+.+
T Consensus 101 gi~~gl~P~LIFlGIGAMtDFgpllanP~~~---ll~gaaAQ~G-iF~t~~~A~~lGF~~~eAAsIgIIGgADGPTaIf~ 176 (399)
T TIGR03136 101 TFSNSLVACILFFGIGAMSDISFILARPWAS---ITVALFAEMG-TFATLVIGYYCGLTPGEAAAVGTIGGADGPMVLFA 176 (399)
T ss_pred HHhcccHHHHHHHhccHHhcchHHHhChHHH---HHHHHHHHhh-HHHHHHHHHHcCCCHHHhhHHhhcccCCccHHHHH
Confidence 3457899999999999999998876443322 22 2333333 33455667788999999999999988888888877
Q ss_pred HHHhhh--cCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 043315 253 ILRWRI--RKLIDKDTFTLAMLTHTAVTAVRTPLISLYYTPYRK 294 (587)
Q Consensus 253 ~~i~~~--~gli~~~~f~~lvl~~lvtt~i~~plv~~ly~p~~~ 294 (587)
.+.--. .|-|.-..|+- |+++ =.+-||++|.+..+++|
T Consensus 177 s~kLAp~Llg~IaVAAYsY---MaLV-PiiqPpimklLttkkER 216 (399)
T TIGR03136 177 SLILAKDLFVPISIIAYLY---LSLT-YAGYPYLIKLLVPKKYR 216 (399)
T ss_pred HHhhhhHhHHHHHHHHHHH---HHHH-hcccchHHHhhcCHHHH
Confidence 663321 12233333443 3333 46789999998755444
No 64
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=90.89 E-value=1.9 Score=46.14 Aligned_cols=108 Identities=10% Similarity=0.045 Sum_probs=65.2
Q ss_pred cceeeecCCcccccccccccCCCCCCCCCHHHHHHHHHHhcCCCCCCcEEEEEEeeeccCCCccccccccccccccCCCc
Q 043315 318 RKNLMENTPITQHKIYVENSKSGEKPRPFVHSLITLLKAFNSSEMSPLCACVLHLVELVGRAAPLLVPHNTHKRKIKENS 397 (587)
Q Consensus 318 ril~c~~~~~~~~~v~~~~~~~~~~~~~~v~~li~Ll~~~~~~~~sp~~v~~lhlvel~~r~s~~l~~~~~~~~~~~~~~ 397 (587)
|||++ +...+ +....++-+-.+.......-+++++|+++...-.. ..+ .....
T Consensus 7 kILVa---------vDGSe---------~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~----~~~-----~~~~~ 59 (357)
T PRK12652 7 RLLVP---------VADSV---------TVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDP----EGQ-----DELAA 59 (357)
T ss_pred eEEEE---------eCCCH---------HHHHHHHHHHHHHHhcCCCCEEEEEEEecCccccc----chh-----HHHHH
Confidence 68888 77776 66665555544442211236899999988431110 000 01123
Q ss_pred hhHHHHHHHhhhc------CCceEEEEEEEEe-c----CCChHHHHHHHHhhcCCCEEEeccCCCc
Q 043315 398 TDRIMRAMTKFSK------SSQVTIQPFILIA-P----YKTMYESISKLAQDEFIPFIILPSHQSH 452 (587)
Q Consensus 398 ~~~i~~~f~~~~~------~~~v~v~~~~~vs-~----~~~m~~dI~~~A~e~~~~lIilp~h~~~ 452 (587)
.+++++..+.... ..+++++..+... . .-+.++.|++.|+|+++|+|+++=..+.
T Consensus 60 ~eelle~~~~~~~~~l~~~~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~~~ 125 (357)
T PRK12652 60 AEELLERVEVWATEDLGDDASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPEYNP 125 (357)
T ss_pred HHHHHHHHHHHHHHhhhcccCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 3455555555422 2567777665542 1 1477999999999999999999965543
No 65
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=90.64 E-value=14 Score=34.68 Aligned_cols=116 Identities=16% Similarity=0.087 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHhChh--HHHHHHHhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccc--hhHHHHH
Q 043315 132 GALVMGFLSDAIGTT--YLLGALLMGLIIPPGPPLGIAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQNG--SRLISFE 207 (587)
Q Consensus 132 ~~~~~a~lae~~G~~--~ilGAFlaGL~lp~~~p~~~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~~--~~~~~~~ 207 (587)
.....+++.+.+|+. .++||.+++.++.-.....-++-+.+.. +-.-+-=..+|.+++...+... .+.. .+
T Consensus 6 ~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~~~~~~~~P~~~~~----~~qviiG~~iG~~f~~~~l~~~~~~~~~-~l 80 (156)
T TIGR03082 6 VGLAGGLLASLLGLPAAWLLGPLLAGAVLSLAGGLEITLPPWLLA----LAQVVIGILIGSRFTREVLAELKRLWPA-AL 80 (156)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhcCCccCCCCHHHHH----HHHHHHHHHHHccCCHHHHHHHHHHHHH-HH
Confidence 556667788899986 7899999998887542222122222222 2223334688999998776532 3333 44
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhhhhhHHHHHHHH
Q 043315 208 IIIGASYLGKFVGSLLIWVFIKASIPNAVIFSCILSLKGIMDLIFILR 255 (587)
Q Consensus 208 ~l~~~a~~~K~l~~~l~~~~~~~~~~~a~~lglll~~kG~~~li~~~i 255 (587)
...+..+..-++.+++..++.++++.+++ +...+-|.-|+.....
T Consensus 81 ~~~~~~l~~~~~~~~~l~~~~~~~~~ta~---La~~PGGl~~m~~~A~ 125 (156)
T TIGR03082 81 LSTVLLLALSALLAWLLARLTGVDPLTAF---LATSPGGASEMAALAA 125 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHH---HHhCCchHHHHHHHHH
Confidence 55556666788888889999999999885 3357777777776553
No 66
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=89.79 E-value=2.9 Score=40.75 Aligned_cols=102 Identities=17% Similarity=0.290 Sum_probs=60.8
Q ss_pred HHHHHhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhccccccc---ccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 043315 149 LGALLMGLIIPPGPPLGIAIIERFELVIFHFFLPFFYIRIGQYTNLS---SIQNGSRLISFEIIIGASYLGKFVGSLLIW 225 (587)
Q Consensus 149 lGAFlaGL~lp~~~p~~~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~---~l~~~~~~~~~~~l~~~a~~~K~l~~~l~~ 225 (587)
+++|++|+++....+......++... ..+.+=+|++-+.+.-|-. .+....+. .+.+-+.+++|-++++++.+
T Consensus 2 l~~li~Gi~lG~~~~~~~~~~~~~~~--~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~--~Llipl~tIlGSllgg~l~~ 77 (191)
T PF03956_consen 2 LIALILGILLGYFLRPPFSLIDKIST--YALYLLLFLVGIDLGSNREILRQLRSLGKR--ALLIPLATILGSLLGGLLAS 77 (191)
T ss_pred eeeHHHHHHHHHHhcccccccccHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHhhHH--HHHHHHHHHHHHHHHHHHHH
Confidence 45667777666542222222233333 2344445555444444422 22222232 55666777889999999999
Q ss_pred HHhCCChHHHHHHHHHhhhhhhHHHHHHH
Q 043315 226 VFIKASIPNAVIFSCILSLKGIMDLIFIL 254 (587)
Q Consensus 226 ~~~~~~~~~a~~lglll~~kG~~~li~~~ 254 (587)
+++++|++|++++|..+.--..-...+..
T Consensus 78 ~ll~~~~~~~lav~sG~GwYSlsg~~i~~ 106 (191)
T PF03956_consen 78 LLLGLSLKESLAVASGFGWYSLSGVLITQ 106 (191)
T ss_pred HHhcCCHHHHHHHHccCcHHHhHHHHHHh
Confidence 99999999999999876555444444433
No 67
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=89.76 E-value=1.8 Score=46.52 Aligned_cols=113 Identities=13% Similarity=0.114 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHhcccccccccccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHH-HhhhhhhHH-HHH
Q 043315 177 FHFFLPFFYIRIGQYTNLSSIQNG--SRLISFEIIIGASYLGKFVGSLLIWVFIKASIPNAVIFSC-ILSLKGIMD-LIF 252 (587)
Q Consensus 177 ~~~flPlFF~~~Gl~~dl~~l~~~--~~~~~~~~l~~~a~~~K~l~~~l~~~~~~~~~~~a~~lgl-ll~~kG~~~-li~ 252 (587)
.++|+-+||+.+|+..+++.+... .... ...+..+......+.+...+.++++++.-++..|. .+. -|+=. .+.
T Consensus 66 ~~~lm~~fF~~igL~~~~~~lkkgg~~~~~-~~~~~~~~~~~Q~~vG~~la~l~gl~p~~Gll~Gsi~f~-GGhGTAaa~ 143 (368)
T PF03616_consen 66 QDFLMIIFFTTIGLGASLKLLKKGGKAVLI-FLLIAIILAFLQNIVGLGLAKLLGLDPLFGLLAGSIGFT-GGHGTAAAF 143 (368)
T ss_pred HHHHHHHHHHHHhhccchhhHHhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHhcccccc-CCccHHHHH
Confidence 456788999999999998877543 1221 22222233445666666667788998776665542 222 22222 233
Q ss_pred HHHhhhc-CCCCHHHHHH--HHHHHHHHHHHHHHHHHHhccc
Q 043315 253 ILRWRIR-KLIDKDTFTL--AMLTHTAVTAVRTPLISLYYTP 291 (587)
Q Consensus 253 ~~i~~~~-gli~~~~f~~--lvl~~lvtt~i~~plv~~ly~p 291 (587)
.....+. |.=+.....+ ..+-.+.-.++..|+.+++.|+
T Consensus 144 g~~fe~~~G~~~a~~vg~a~AT~Glv~G~liGgpi~~~lirk 185 (368)
T PF03616_consen 144 GPTFEELYGWEGATSVGMAAATFGLVVGGLIGGPIANWLIRK 185 (368)
T ss_pred HHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3344444 5543333222 1122233457788999998763
No 68
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=88.85 E-value=29 Score=37.74 Aligned_cols=92 Identities=13% Similarity=0.087 Sum_probs=54.2
Q ss_pred ChhHHHHHHHhhhhcCCCCCch--hHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHH-HH
Q 043315 144 GTTYLLGALLMGLIIPPGPPLG--IAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQNGSRLISFEIIIGASYLGKF-VG 220 (587)
Q Consensus 144 G~~~ilGAFlaGL~lp~~~p~~--~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~~~~~~~~~~l~~~a~~~K~-l~ 220 (587)
.+...++|++.|+++.+.-+.. .++.++.-....++.+-+|.+..=|.+++..+.+.... .++++++.++.-+ ..
T Consensus 244 ~lP~fv~am~~giiirni~~~~~~~~~~~~~i~~I~~~sLdlfl~~AlmsL~L~~l~~~a~P--lliil~~q~i~~~l~~ 321 (398)
T TIGR00210 244 MLPTFVWCLFVGVILRNPLSFKKFPWVAERAVSVIGNVSLSLFLAIALMSLQLWELADLAGP--IALILLVQVMFMALYA 321 (398)
T ss_pred CCCchHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 3667789999999998732111 12333333344677778888888888998887643232 2333333333333 44
Q ss_pred HHHHHHHhCCChHHHHHH
Q 043315 221 SLLIWVFIKASIPNAVIF 238 (587)
Q Consensus 221 ~~l~~~~~~~~~~~a~~l 238 (587)
.++..|.+|-+ .|+-.+
T Consensus 322 ~fv~fr~mg~~-ydaaV~ 338 (398)
T TIGR00210 322 IFVTFRLMGKD-YDAAVL 338 (398)
T ss_pred HHHhHHhccch-HHHHHH
Confidence 45666777755 666553
No 69
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=85.83 E-value=19 Score=39.58 Aligned_cols=118 Identities=18% Similarity=0.169 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHhChhHHHHHHHhhhhcC-CC-CCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHH
Q 043315 132 GALVMGFLSDAIGTTYLLGALLMGLIIP-PG-PPLGIAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQNGSRLISFEII 209 (587)
Q Consensus 132 ~~~~~a~lae~~G~~~ilGAFlaGL~lp-~~-~p~~~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~~~~~~~~~~l 209 (587)
+...++.+++.+....+..+.+.|++.. .. .+......-.-|.+ ..+++|+-....|+++|.+.+... +.. +..+
T Consensus 17 l~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~l~~~~~~~~~~~el~-~~l~l~ilLf~~g~~l~~~~l~~~-~~~-I~~L 93 (429)
T COG0025 17 LGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISPDLELDPELF-LVLFLAILLFAGGLELDLRELRRV-WRS-ILVL 93 (429)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhccccccccCChHHH-HHHHHHHHHHHhHhcCCHHHHHHh-HHH-HHHH
Confidence 6666777788888877777777776665 21 12222222222222 268888888999999999988643 222 3334
Q ss_pred HHHHHHHHHHHHHHHHHHh--CCChHHHHHHHHHhhhhhhHHHHH
Q 043315 210 IGASYLGKFVGSLLIWVFI--KASIPNAVIFSCILSLKGIMDLIF 252 (587)
Q Consensus 210 ~~~a~~~K~l~~~l~~~~~--~~~~~~a~~lglll~~kG~~~li~ 252 (587)
.....+...++..+..++. ++|+..++.+|.++++..-+.+.-
T Consensus 94 a~~~v~it~~~~g~~~~~l~~~i~~~~a~l~gAilspTDPv~v~~ 138 (429)
T COG0025 94 ALPLVLITALGIGLLAHWLLPGIPLAAAFLLGAILSPTDPVAVSP 138 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHhHHhcCCCchhhHH
Confidence 4444445555555555555 899999999999999987776644
No 70
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=85.77 E-value=47 Score=34.34 Aligned_cols=104 Identities=12% Similarity=0.078 Sum_probs=54.9
Q ss_pred HHHHHHhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043315 148 LLGALLMGLIIPPGPPLGIAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQNGSRLISFEIIIGASYLGKFVGSLLIWVF 227 (587)
Q Consensus 148 ilGAFlaGL~lp~~~p~~~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~~~~~~~~~~l~~~a~~~K~l~~~l~~~~ 227 (587)
++-|+++|+.+.+..|...+..+++..+....+.=+.+..++.+.+ .+....+. +....++..+.-+..+++.++.
T Consensus 143 v~vPl~lG~~~r~~~p~~~~~~~~~~~~s~~~l~liv~~~~~~~~~--~i~~~~~~--~~~~~~ll~~~~~~~g~~~a~~ 218 (286)
T TIGR00841 143 VLIPVSIGMLVKHKLPQIAKIILKVGLISVFLLSVIIAVVGGINVE--NLATIGPL--LLLVGILLPLAGFLLGYLLAKL 218 (286)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhCchHHHHHHHHHHHHHHHhhHH--HHHHhhHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 4568888888886534333344445554333333333333333333 23222222 2233333345556677778888
Q ss_pred hCCChHHHHHHHHHhhhhh-hHHHHHHHH
Q 043315 228 IKASIPNAVIFSCILSLKG-IMDLIFILR 255 (587)
Q Consensus 228 ~~~~~~~a~~lglll~~kG-~~~li~~~i 255 (587)
+|.+.+|...+++-...|= ...+.++..
T Consensus 219 ~~l~~~~~~t~~~~~g~qN~~lal~la~~ 247 (286)
T TIGR00841 219 AGLPWARCRTISIEVGMQNSQLCSTIAQL 247 (286)
T ss_pred hCCCHhhheeeeeeeecccHHHHHHHHHH
Confidence 9999877777666554432 345554443
No 71
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=85.69 E-value=0.29 Score=52.44 Aligned_cols=112 Identities=22% Similarity=0.330 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhChhHHHHHHHhhhhcCCCCCch--hHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHH
Q 043315 132 GALVMGFLSDAIGTTYLLGALLMGLIIPPGPPLG--IAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQNGSRLISFEII 209 (587)
Q Consensus 132 ~~~~~a~lae~~G~~~ilGAFlaGL~lp~~~p~~--~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~~~~~~~~~~l 209 (587)
..++...+.+.++++.++|-.++|+++... +++ +.-.+-++.+ ..+.+++.....|+++|.+.+... +.. ...+
T Consensus 7 ~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~-~~~~~~~~~~~~~~l-~~i~l~~llF~~G~~~d~~~l~~~-~~~-~~~~ 82 (380)
T PF00999_consen 7 LAFVAGILFRRLGIPSIIGYILVGIVLGPS-GLGLLEPDNPSFELL-AEIGLAFLLFEAGLELDIKELRRN-WRR-ALAL 82 (380)
T ss_dssp ------------------------------------------S-SS-HHHHS--SSHHHHTTGGGG--------------
T ss_pred hHHHHHHHHHHhCCCHHHHHHHheeehhhh-hhhhccchhhHHHHH-HHHHHHHHHHHHHHhhcccccccc-ccc-cccc
Confidence 345555578999999999999999999987 333 1113445555 778888888999999999988643 222 2233
Q ss_pred HHHHHHHHHHH-HHHHHH---HhCCChHHHHHHHHHhhhhhh
Q 043315 210 IGASYLGKFVG-SLLIWV---FIKASIPNAVIFSCILSLKGI 247 (587)
Q Consensus 210 ~~~a~~~K~l~-~~l~~~---~~~~~~~~a~~lglll~~kG~ 247 (587)
.+..++.-++. ++.... ..++++.+++.+|..++.-..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~ts~ 124 (380)
T PF00999_consen 83 GLVGFLLPFILVGFLLSFFLFILGLSWAEALLLGAILSATSP 124 (380)
T ss_dssp -------------------------------TTHHHHTT--H
T ss_pred ccceeeehhhHHHHHHHHhhccchhhhHHHhhhHHhhhcccc
Confidence 33333333444 444443 478999999999999886543
No 72
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=84.72 E-value=56 Score=34.39 Aligned_cols=148 Identities=11% Similarity=-0.012 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHhCh--hHHHHHHHhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccc--hhHHHHH
Q 043315 132 GALVMGFLSDAIGT--TYLLGALLMGLIIPPGPPLGIAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQNG--SRLISFE 207 (587)
Q Consensus 132 ~~~~~a~lae~~G~--~~ilGAFlaGL~lp~~~p~~~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~~--~~~~~~~ 207 (587)
.+.+.+++++.+++ ...+||++.+.++.-.....-.+=+.+.. +-.=+.=.++|.+++...+... .+.. .+
T Consensus 163 ~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~~~~~~~P~~l~~----~aqv~iG~~iG~~f~~~~l~~~~~~~~~-~l 237 (318)
T PF05145_consen 163 AALAGGLLARRLRIPAPWLLGPMLVSAILNLFGGPSFSLPPWLVN----AAQVLIGASIGSRFTRETLRELRRLLPP-AL 237 (318)
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhCCCCCCCHHHHH----HHHHHHHHHHHccccHHHHHHHHHHHHH-HH
Confidence 77778889999997 45799999988877542111111122222 2222334678899987766532 2333 44
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHH-HHHHHHHHH
Q 043315 208 IIIGASYLGKFVGSLLIWVFIKASIPNAVIFSCILSLKGIMDLIFILRWRIRKLIDKDTFTLAMLTHTAV-TAVRTPLIS 286 (587)
Q Consensus 208 ~l~~~a~~~K~l~~~l~~~~~~~~~~~a~~lglll~~kG~~~li~~~i~~~~gli~~~~f~~lvl~~lvt-t~i~~plv~ 286 (587)
...++.+..-.+.+++..++.++++.+++ +.+.+-|.-|+.+.....+. |...-+.+=+.=++. ..+.|++.+
T Consensus 238 ~~~~~~l~~~~~~a~~l~~~~~~~~~t~~---La~aPGGl~eM~l~A~~l~~---d~~~V~~~q~~Rl~~v~~~~p~~~r 311 (318)
T PF05145_consen 238 LSTLLLLALCALFAWLLSRLTGIDFLTAL---LATAPGGLAEMALIALALGA---DVAFVAAHQVVRLLFVLLLAPFIAR 311 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHH---HHhCCccHHHHHHHHHHcCC---ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666778888889999999988875 45688888888876655443 433322222221221 244677777
Q ss_pred Hhcc
Q 043315 287 LYYT 290 (587)
Q Consensus 287 ~ly~ 290 (587)
++.|
T Consensus 312 ~~~r 315 (318)
T PF05145_consen 312 WLRR 315 (318)
T ss_pred HHHH
Confidence 7654
No 73
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=83.39 E-value=15 Score=41.51 Aligned_cols=244 Identities=11% Similarity=0.091 Sum_probs=134.0
Q ss_pred hHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CC-CCChHHHHHHHHHHHhh-HHHHHHHhhccccCCchHHHH
Q 043315 4 TRILQVAKNALSVGMPCFLLSFNFTISLTLVLRENIP-GM-VGGSFPFLLSMVLSLNY-FPVVHALSELNLLTSDLSQLA 80 (587)
Q Consensus 4 ~~l~~~~~~a~~ig~~~~~ip~~~g~~~~~~l~~~~~-~~-~~~~~~l~lg~~ls~Ts-~pVv~iL~el~ll~s~~Grla 80 (587)
+.+..|....+..|+.|-+...+.-.+.-+.+..... +. ......+..|...|..- .+|+.+.+|.. .|.-+=-++
T Consensus 120 r~Ff~NlgtILlfAVvGTi~Na~~~g~sL~~i~~~glf~~~~glld~LlFgSLIsAVDPVAVLaVFEEih-VNe~LfI~V 198 (670)
T KOG1966|consen 120 RAFFENLGTILLFAVVGTIWNAFTIGASLYAISLSGLFGMSIGLLDILLFGSLISAVDPVAVLAVFEEIH-VNEVLFIIV 198 (670)
T ss_pred HHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhcCchhhhhhhhhhc-cccEEEeee
Confidence 3455666777778887777755432222222222111 11 11234455555555544 33338889988 455555677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh--c----------C----------------hhHHHHHHHHHcCCCCcchhHHHHHHH
Q 043315 81 ISCAILHKTIGWLSVALTSAIIK--S----------D----------------KGPAVCWIIKINPEGKPVKEIYVLAIG 132 (587)
Q Consensus 81 ls~avi~Di~~~ill~i~~~~~~--s----------~----------------~rp~~~~l~~r~~~g~~~~e~~i~~i~ 132 (587)
-+-+++||.+.+++.-+...+.+ + | +--++.-+..|...+-.+-|..+.+++
T Consensus 199 FGESLlNDaVTVVLY~~f~sf~~ig~~n~~~~d~~~G~~sFfVVslGG~lvGivfafl~sl~tkft~~vrviePvfif~~ 278 (670)
T KOG1966|consen 199 FGESLLNDAVTVVLYNMFISFVEIGSDNLTTIDYVLGVVSFFVVSLGGALVGIVFAFLASLVTKFTKHVRVLEPVFIFLL 278 (670)
T ss_pred ehhhhhcCceEEehHHHHHHHHHhcccceeEeeeecceeEEEEEecCchhHHHHHHHHHHHHHHhhcceeeecchhhhhH
Confidence 88899999998888766555441 0 1 222233333343333233342333337
Q ss_pred HHHHHHHHHHhChhHHHHHHHhhhhcCCCC--CchhHH---HHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHH
Q 043315 133 ALVMGFLSDAIGTTYLLGALLMGLIIPPGP--PLGIAI---IERFELVIFHFFLPFFYIRIGQYTNLSSIQNGSRLISFE 207 (587)
Q Consensus 133 ~~~~a~lae~~G~~~ilGAFlaGL~lp~~~--p~~~~l---~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~~~~~~~~~ 207 (587)
..++...+|.++++.+++--+-|+++..-- ...++. ++..-...+..--++-|++.|..+==. -...++.+ +.
T Consensus 279 pYlaYL~aEm~hlSgIlAii~CG~~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~v~~-~h~wd~~F-i~ 356 (670)
T KOG1966|consen 279 PYLAYLTAEMFHLSGILAIIFCGLCMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVSTVSS-NHHWDFAF-IC 356 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeehhhhcCC-cceeehhh-hh
Confidence 777777889999999999999999998631 112222 222222223444567777778765322 12124554 44
Q ss_pred HHHHHHHHHHHHHHHHHHHHh------CCChHHHHHHHHHhhhhhhHHHH
Q 043315 208 IIIGASYLGKFVGSLLIWVFI------KASIPNAVIFSCILSLKGIMDLI 251 (587)
Q Consensus 208 ~l~~~a~~~K~l~~~l~~~~~------~~~~~~a~~lglll~~kG~~~li 251 (587)
+-++...+-+++|..+-+++. +++..|-+.++.+ .-||.+.+.
T Consensus 357 ~T~~fc~~~R~lgv~~lt~~~N~fr~~k~~~~DQfimsyG-GLRGAiaF~ 405 (670)
T KOG1966|consen 357 LTLVFCLIYRAIGVVVLTWFLNKFRMVKLEFVDQFIMSYG-GLRGAIAFG 405 (670)
T ss_pred hHHHHHHHHHHHHhhhhhhhhhhhheeeccccceeeeecC-Ccchhhhee
Confidence 455555666888766665554 3455565444333 335555443
No 74
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=83.22 E-value=6.2 Score=40.89 Aligned_cols=125 Identities=18% Similarity=0.213 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHhChhHHHHHHHhhhhcCCC-CC--chhHHHHHHHHHHHHHHHHHHHHHhcccccccccccc-hhHHHHH
Q 043315 132 GALVMGFLSDAIGTTYLLGALLMGLIIPPG-PP--LGIAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQNG-SRLISFE 207 (587)
Q Consensus 132 ~~~~~a~lae~~G~~~ilGAFlaGL~lp~~-~p--~~~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~~-~~~~~~~ 207 (587)
..|+.+++++.+.++|.+|=.++|.+.... |. -.+.+...+..++- -+....+|+++.++.+... .|.. -.
T Consensus 17 lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFvad~~La~~LAelGV----iLLmFgvGLhfslkdLLavk~iAi-pg 91 (408)
T COG4651 17 LAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVADQTLAPELAELGV----ILLMFGVGLHFSLKDLLAVKAIAI-PG 91 (408)
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCcccchhHHHHHHHhhH----HHHHHhcchheeHHHHhhHHHHhc-ch
Confidence 899999999999999999999999998743 22 23566667776642 2344578999888776532 3322 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhhhhhHHHHHHHHhhhcCCCCHH
Q 043315 208 IIIGASYLGKFVGSLLIWVFIKASIPNAVIFSCILSLKGIMDLIFILRWRIRKLIDKD 265 (587)
Q Consensus 208 ~l~~~a~~~K~l~~~l~~~~~~~~~~~a~~lglll~~kG~~~li~~~i~~~~gli~~~ 265 (587)
.+.-++ .-..-++..+...|+++...+..|+.++.-..+-+. -.-.+.+++|.+
T Consensus 92 Al~qia--~at~lg~gL~~~lgws~~~glvfGlaLS~aSTVvll--raLqEr~lidt~ 145 (408)
T COG4651 92 ALAQIA--LATLLGMGLSSLLGWSFGTGIVFGLALSVASTVVLL--RALEERQLIDTQ 145 (408)
T ss_pred HHHHHH--HHHHHHhHHHHHcCCCcccceeeeehhhhHHHHHHH--HHHHHhcccccc
Confidence 121111 112223334667899999999999999876654333 333455666643
No 75
>PRK10490 sensor protein KdpD; Provisional
Probab=82.06 E-value=8.1 Score=46.56 Aligned_cols=116 Identities=11% Similarity=0.079 Sum_probs=75.1
Q ss_pred ccccceeeecCCcccccccccccCCCCCCCCCHHHHHHHHHHhcCCCCCCcEEEEEEeeeccCCCccccccccccccccC
Q 043315 315 SELRKNLMENTPITQHKIYVENSKSGEKPRPFVHSLITLLKAFNSSEMSPLCACVLHLVELVGRAAPLLVPHNTHKRKIK 394 (587)
Q Consensus 315 ~elril~c~~~~~~~~~v~~~~~~~~~~~~~~v~~li~Ll~~~~~~~~sp~~v~~lhlvel~~r~s~~l~~~~~~~~~~~ 394 (587)
...|||+| |.... +...+|.-...+....+ ...+++|+..-..+. . .
T Consensus 249 ~~eriLV~---------v~~~~---------~~~~lIr~~~rlA~~~~--a~~~~l~V~~~~~~~--~-----------~ 295 (895)
T PRK10490 249 TRDAILLC---------IGHNT---------GSEKLVRTAARLAARLG--SVWHAVYVETPRLHR--L-----------P 295 (895)
T ss_pred cCCeEEEE---------ECCCc---------chHHHHHHHHHHHHhcC--CCEEEEEEecCCcCc--C-----------C
Confidence 45789999 98877 88888887776664433 568999975321110 0 1
Q ss_pred CCchhHHHHHHHhhhcCCceEEEEEEEEecCCChHHHHHHHHhhcCCCEEEeccCCCcc-ccccchhHHHhhccCC
Q 043315 395 ENSTDRIMRAMTKFSKSSQVTIQPFILIAPYKTMYESISKLAQDEFIPFIILPSHQSHK-MQQGGGFNCKIQNCAP 469 (587)
Q Consensus 395 ~~~~~~i~~~f~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~~~-~~dg~~~n~~vl~~ap 469 (587)
....+++.+.++ .+...+..+... +.++..+.|.+.|++++++.||+|=+++.. +..| .+.+++++.+|
T Consensus 296 ~~~~~~l~~~~~-lA~~lGa~~~~~----~~~dva~~i~~~A~~~~vt~IViG~s~~~~~~~~~-s~~~~l~r~~~ 365 (895)
T PRK10490 296 EKKRRAILSALR-LAQELGAETATL----SDPAEEKAVLRYAREHNLGKIIIGRRASRRWWRRE-SFADRLARLGP 365 (895)
T ss_pred HHHHHHHHHHHH-HHHHcCCEEEEE----eCCCHHHHHHHHHHHhCCCEEEECCCCCCCCccCC-CHHHHHHHhCC
Confidence 122345555553 444444443322 237899999999999999999999765432 2133 67777777776
No 76
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=80.07 E-value=14 Score=39.52 Aligned_cols=134 Identities=11% Similarity=0.127 Sum_probs=72.0
Q ss_pred HHHHHhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhccccc-ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043315 149 LGALLMGLIIPPGPPLGIAIIERFELVIFHFFLPFFYIRIGQYTN-LSSIQNGSRLISFEIIIGASYLGKFVGSLLIWVF 227 (587)
Q Consensus 149 lGAFlaGL~lp~~~p~~~~l~ekl~~~~~~~flPlFF~~~Gl~~d-l~~l~~~~~~~~~~~l~~~a~~~K~l~~~l~~~~ 227 (587)
+.-.++|....+..-+.++-.+.+..++..+++|.+....=.+.+ ...+. .++. ..+...+..+.-++.+++..++
T Consensus 10 ~~ii~~G~~~~~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~ 86 (385)
T PF03547_consen 10 FLIILLGYLLGRFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLL--SLWF-IPVFAFIIFILGLLLGFLLSRL 86 (385)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhh--hhHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 334445555555445667778889999999999998876655543 32222 2333 3333333333445556666777
Q ss_pred hCCChHHH--HHHHHHhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 043315 228 IKASIPNA--VIFSCILSLKGIMDLIFILRWRIRKLIDKDTFTLAMLTHTAVTAVRTPLISLYYT 290 (587)
Q Consensus 228 ~~~~~~~a--~~lglll~~kG~~~li~~~i~~~~gli~~~~f~~lvl~~lvtt~i~~plv~~ly~ 290 (587)
++.+.++. +.++.....-|.+.+-+...-+.. +.....++..++.+++.-++...+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~N~~~lglpi~~~l~g~-----~~~~~~~~~~~~~~i~~~~~~~~l~~ 146 (385)
T PF03547_consen 87 FRLPKEWRGVFVLAASFGNTGFLGLPILQALFGE-----RGVAYAIIFDVVNNIILWSLGYFLLE 146 (385)
T ss_pred cCCCcccceEEEecccCCcchhhHHHHHHHHhcc-----hhhhhehHHHHhhHHHHHHHHHHhhc
Confidence 77765543 333444455666666665544433 33333333444444444444444443
No 77
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=78.65 E-value=9.1 Score=40.05 Aligned_cols=113 Identities=12% Similarity=0.174 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCC------ChHHHHHHHHHhhhhhh
Q 043315 174 LVIFHFFLPFFYIRIGQYTNLSSIQNGSRLISFEIIIGASYLGKFVGSLLIWVFIKA------SIPNAVIFSCILSLKGI 247 (587)
Q Consensus 174 ~~~~~~flPlFF~~~Gl~~dl~~l~~~~~~~~~~~l~~~a~~~K~l~~~l~~~~~~~------~~~~a~~lglll~~kG~ 247 (587)
.+-+++|=|+-|.-+|..+|++.+...... +++-..+=+| +..+++.+.++|+ +.+|+-.+|.+=.+-|-
T Consensus 59 gi~~~l~P~LIFlGIGAmtDFgpllanP~~---~llGaaAQ~G-iF~t~~~A~~lGf~~~~~~~~~eAAsIgIIGgADGP 134 (354)
T TIGR01109 59 GIGSGIAPLLIFMGIGALTDFGPLLANPRT---LLLGAAAQFG-IFATVFGALTLNFFGIISFSLPQAAAIGIIGGADGP 134 (354)
T ss_pred HHhcchHHHHHHHhccHHhhhHHHHhChHH---HHHHHHHHhh-HHHHHHHHHHhCCCcccccChhhceeeeeeccCCCc
Confidence 344789999999999999999877543322 2233333333 3345566777788 67999999988888888
Q ss_pred HHHHHHHHhhh--cCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 043315 248 MDLIFILRWRI--RKLIDKDTFTLAMLTHTAVTAVRTPLISLYYTPYRK 294 (587)
Q Consensus 248 ~~li~~~i~~~--~gli~~~~f~~lvl~~lvtt~i~~plv~~ly~p~~~ 294 (587)
..+.+.+.--. .|-|.-..|+- |+++ =.+-||++|.+...++|
T Consensus 135 t~If~s~~lap~Llg~IaVAAYsY---MaLv-PiiqPpimklLttkkeR 179 (354)
T TIGR01109 135 TAIYLSGKLAPELLAAIAVAAYSY---MALV-PIIQPPIMKALTSEKER 179 (354)
T ss_pred hhhhhHhhhhhHHHHHHHHHHHHH---HHHH-hcccchHHHhhcChHHh
Confidence 77776653221 12233333443 3333 46689999998754444
No 78
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=77.87 E-value=6 Score=41.98 Aligned_cols=112 Identities=13% Similarity=0.189 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh------CCChHHHHHHHHHhhhhhhH
Q 043315 175 VIFHFFLPFFYIRIGQYTNLSSIQNGSRLISFEIIIGASYLGKFVGSLLIWVFI------KASIPNAVIFSCILSLKGIM 248 (587)
Q Consensus 175 ~~~~~flPlFF~~~Gl~~dl~~l~~~~~~~~~~~l~~~a~~~K~l~~~l~~~~~------~~~~~~a~~lglll~~kG~~ 248 (587)
+.+++|=|+-|.-+|..+|++.+...... +++-..+=+|-+. +++.+.++ |++.+|+-.+|.+=..-|-.
T Consensus 131 i~~gi~P~LIF~GIGAMtDFgpLlanP~~---~llGaAAQ~GIF~-t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPT 206 (433)
T PRK15475 131 IGSGVAPLVIFMGVGAMTDFGPLLANPRT---LLLGAAAQFGIFA-TVLGALTLNYFGLISFTLPQAAAIGIIGGADGPT 206 (433)
T ss_pred HhcchHHHHHHHhccHHhcchHHhhCHHH---HHHHHHHHhhHHH-HHHHHHHHhhcccCCCChhhchheeeeccCCCch
Confidence 44789999999999999999877543221 1222233333222 33333333 89999999999988888888
Q ss_pred HHHHHHHhhh--cCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 043315 249 DLIFILRWRI--RKLIDKDTFTLAMLTHTAVTAVRTPLISLYYTPYRK 294 (587)
Q Consensus 249 ~li~~~i~~~--~gli~~~~f~~lvl~~lvtt~i~~plv~~ly~p~~~ 294 (587)
.+.+.+.--. .|-|.-..|+-| +++ =.+-||++|.+...++|
T Consensus 207 sIfvsskLAP~Llg~IaVAAYSYM---aLV-PiIQPpimklLTTkkER 250 (433)
T PRK15475 207 AIYLSGKLAPELLGAIAVAAYSYM---ALV-PLIQPPIMKALTTETER 250 (433)
T ss_pred HHHhHhhhhhHhHHHHHHHHHHHH---HHH-hcccchHHHhccCHHHh
Confidence 8777653221 122333344433 333 46789999998755444
No 79
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=77.75 E-value=5.8 Score=42.55 Aligned_cols=114 Identities=11% Similarity=0.063 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHhcccccccccccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhhhhhH-HHHH
Q 043315 176 IFHFFLPFFYIRIGQYTNLSSIQNG--SRLISFEIIIGASYLGKFVGSLLIWVFIKASIPNAVIFSCILSLKGIM-DLIF 252 (587)
Q Consensus 176 ~~~~flPlFF~~~Gl~~dl~~l~~~--~~~~~~~~l~~~a~~~K~l~~~l~~~~~~~~~~~a~~lglll~~kG~~-~li~ 252 (587)
..+.|+-+||+++|+.-++..+... ...+.......++. ..-..+...+++.|+++.-++..|-+--.-|+= ..+.
T Consensus 67 l~~~fmliFFttiglsa~~~~lkkgGk~l~if~~~a~~l~~-~Qn~igi~la~~lgidpl~gllagsIsl~GGHGtaAA~ 145 (404)
T COG0786 67 LQDVFMLIFFATIGLSASFKLLKKGGKKLAIFLATAAGLAV-LQNFIGIGLAKLLGLDPLIGLLAGSISLVGGHGTAAAW 145 (404)
T ss_pred cccHHHHHHHHHhccccchhHHHhcChhHHHHHHHHHHHHH-HHHHHHHHHHHHcCccHHHHHHhcceeecCCCchHHHH
Confidence 3678999999999999999988643 12110222222223 334444555778888877777664433333332 3344
Q ss_pred HHHhhhcCCCCHHHH--HHHHHHHHHHHHHHHHHHHHhcc
Q 043315 253 ILRWRIRKLIDKDTF--TLAMLTHTAVTAVRTPLISLYYT 290 (587)
Q Consensus 253 ~~i~~~~gli~~~~f--~~lvl~~lvtt~i~~plv~~ly~ 290 (587)
.....+.|.=+.-.. .....-.+.-.++..|+.+++.+
T Consensus 146 ~~~f~~~G~~~A~~va~A~ATfGlv~GgliGgpva~~li~ 185 (404)
T COG0786 146 GPTFEDLGAEGATEVAMASATFGLVAGGLIGGPVARWLIK 185 (404)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHHHhHhcCcHHHHHHHH
Confidence 555566665443221 12222233345667899999885
No 80
>PRK03818 putative transporter; Validated
Probab=77.51 E-value=19 Score=40.95 Aligned_cols=84 Identities=14% Similarity=0.113 Sum_probs=54.0
Q ss_pred HHHHHhhhhcCCC-CCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccc---cchhHHHHHHHHHHHHHHHHHHHHHH
Q 043315 149 LGALLMGLIIPPG-PPLGIAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQ---NGSRLISFEIIIGASYLGKFVGSLLI 224 (587)
Q Consensus 149 lGAFlaGL~lp~~-~p~~~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~---~~~~~~~~~~l~~~a~~~K~l~~~l~ 224 (587)
-|++++|+++..- ++++..+-+....+..++.+-+|...+|++.-...+. ...+.+ .+ +.++.++.-.+.+++.
T Consensus 34 ~g~L~~gl~~G~~~~~~~~~~~~~~~~~~~~~gl~lFv~~vGl~~Gp~f~~~l~~~G~~~-~~-~~~~~~~~~~~~~~~~ 111 (552)
T PRK03818 34 GGVLFGGIIVGHFVSQFGLTLDSDMLHFIQEFGLILFVYTIGIQVGPGFFSSLRKSGLRL-NL-FAVLIVILGGLVTAIL 111 (552)
T ss_pred HHHHHHHHHHhccccccCcccChHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhhHHH-HH-HHHHHHHHHHHHHHHH
Confidence 6899999999982 1223334445566678899999999999998865443 223443 22 2223333344456677
Q ss_pred HHHhCCChHH
Q 043315 225 WVFIKASIPN 234 (587)
Q Consensus 225 ~~~~~~~~~~ 234 (587)
.+++|+++-.
T Consensus 112 ~~~~~~~~~~ 121 (552)
T PRK03818 112 HKLFGIPLPV 121 (552)
T ss_pred HHHhCCCHHH
Confidence 8889998654
No 81
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=77.34 E-value=59 Score=34.76 Aligned_cols=94 Identities=16% Similarity=0.169 Sum_probs=49.1
Q ss_pred HHHH-HHHHHHHHHHHhChhHHHHHHHhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccc-hhHHH
Q 043315 128 VLAI-GALVMGFLSDAIGTTYLLGALLMGLIIPPGPPLGIAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQNG-SRLIS 205 (587)
Q Consensus 128 i~~i-~~~~~a~lae~~G~~~ilGAFlaGL~lp~~~p~~~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~~-~~~~~ 205 (587)
++-+ .+.+++.+. =.-.+.+|.|++|-.+.+.. . +++.+-.+.-....--=+.=.++|...+-..+.+. ++.
T Consensus 234 lFpivv~i~~~ll~--P~a~pLig~Lm~GNllrEsG-v-~rLs~taqn~l~nivTifLGl~vG~t~~A~~FL~~~tl~-- 307 (399)
T TIGR03136 234 VFTIVAAMLLCLLL--PVASPLILSFFLGVAIKEAQ-I-EPYQNLLEKTLTYGSTLFLGLVLGVLCEASTLLDPRVSI-- 307 (399)
T ss_pred HHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHhC-c-HHHHHHHHHHHHHHHHHHHHHHhhhhccHHhhCChHHHH--
Confidence 4444 444444442 23467899999999999873 3 55555544432222222222577777776665443 332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 043315 206 FEIIIGASYLGKFVGSLLIWVF 227 (587)
Q Consensus 206 ~~~l~~~a~~~K~l~~~l~~~~ 227 (587)
++.+=++++..-..++.+.+++
T Consensus 308 Il~LGlvAF~~~tagGvl~aK~ 329 (399)
T TIGR03136 308 LLVLGITALLISGIGGVLGGWF 329 (399)
T ss_pred HHHHHHHHHHHhhhHHHHHHHH
Confidence 2333333444444444444443
No 82
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=77.03 E-value=6.5 Score=41.72 Aligned_cols=112 Identities=13% Similarity=0.188 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh------CCChHHHHHHHHHhhhhhhH
Q 043315 175 VIFHFFLPFFYIRIGQYTNLSSIQNGSRLISFEIIIGASYLGKFVGSLLIWVFI------KASIPNAVIFSCILSLKGIM 248 (587)
Q Consensus 175 ~~~~~flPlFF~~~Gl~~dl~~l~~~~~~~~~~~l~~~a~~~K~l~~~l~~~~~------~~~~~~a~~lglll~~kG~~ 248 (587)
+.+++|=|+-|.-+|..+|++.+...... +++-..+=+|-+. +++.+.++ |++.+|+-.+|.+=..-|-.
T Consensus 131 i~~gi~P~LIF~GIGAMtDFgpLlanP~~---~llGaAAQ~GIF~-t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPT 206 (433)
T PRK15476 131 IGSGVAPLVIFMGVGAMTDFGPLLANPRT---LLLGAAAQFGIFA-TVLGALTLNYFGLISFTLPQAAAIGIIGGADGPT 206 (433)
T ss_pred HhcchHHHHHHHhccHHhcchHHhhCHHH---HHHHHHHHhhHHH-HHHHHHHHhhcccCCCChhhchheeeeccCCCch
Confidence 44789999999999999999877543221 1222233333222 33333333 89999999999988888888
Q ss_pred HHHHHHHhhh--cCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 043315 249 DLIFILRWRI--RKLIDKDTFTLAMLTHTAVTAVRTPLISLYYTPYRK 294 (587)
Q Consensus 249 ~li~~~i~~~--~gli~~~~f~~lvl~~lvtt~i~~plv~~ly~p~~~ 294 (587)
.+.+.+.--. .|-|.-..|+-| +++ =.+-||++|.+...++|
T Consensus 207 sIfvsskLAP~Llg~IaVAAYSYM---aLV-PiIQPpimklLTTkkER 250 (433)
T PRK15476 207 AIYLSGKLAPELLGAIAVAAYSYM---ALV-PLIQPPIMKALTTEKER 250 (433)
T ss_pred HHHhHhhhhhHhHHHHHHHHHHHH---HHH-hcccchHHHhccCHHHh
Confidence 8777653221 122333334433 333 46789999998755444
No 83
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=77.03 E-value=6.5 Score=41.72 Aligned_cols=112 Identities=13% Similarity=0.188 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh------CCChHHHHHHHHHhhhhhhH
Q 043315 175 VIFHFFLPFFYIRIGQYTNLSSIQNGSRLISFEIIIGASYLGKFVGSLLIWVFI------KASIPNAVIFSCILSLKGIM 248 (587)
Q Consensus 175 ~~~~~flPlFF~~~Gl~~dl~~l~~~~~~~~~~~l~~~a~~~K~l~~~l~~~~~------~~~~~~a~~lglll~~kG~~ 248 (587)
+.+++|=|+-|.-+|..+|++.+...... +++-..+=+|-+. +++.+.++ |++.+|+-.+|.+=..-|-.
T Consensus 131 i~~gi~P~LIF~GIGAMtDFgpLlanP~~---~llGaAAQ~GIF~-t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPT 206 (433)
T PRK15477 131 IGSGVAPLVIFMGVGAMTDFGPLLANPRT---LLLGAAAQFGIFA-TVLGALTLNYFGLISFTLPQAAAIGIIGGADGPT 206 (433)
T ss_pred HhcchHHHHHHHhccHHhcchHHhhCHHH---HHHHHHHHhhHHH-HHHHHHHHhhcccCCCChhhchheeeeccCCCch
Confidence 34789999999999999999877543221 1222233333222 33333333 89999999999988888888
Q ss_pred HHHHHHHhhh--cCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 043315 249 DLIFILRWRI--RKLIDKDTFTLAMLTHTAVTAVRTPLISLYYTPYRK 294 (587)
Q Consensus 249 ~li~~~i~~~--~gli~~~~f~~lvl~~lvtt~i~~plv~~ly~p~~~ 294 (587)
.+.+.+.--. .|-|.-..|+-| +++ =.+-||++|.+...++|
T Consensus 207 sIfvsskLAP~Llg~IaVAAYSYM---aLV-PiIQPpimklLTTkkER 250 (433)
T PRK15477 207 AIYLSGKLAPELLGAIAVAAYSYM---ALV-PLIQPPIMKALTTEKER 250 (433)
T ss_pred HHHhHhhhhhHhHHHHHHHHHHHH---HHH-hcccchHHHhccCHHHh
Confidence 8777653221 122333334433 333 46789999998755444
No 84
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=76.08 E-value=16 Score=39.75 Aligned_cols=113 Identities=12% Similarity=0.014 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHhcccccccccccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhhhhhHHHHHHH
Q 043315 177 FHFFLPFFYIRIGQYTNLSSIQNG--SRLISFEIIIGASYLGKFVGSLLIWVFIKASIPNAVIFSCILSLKGIMDLIFIL 254 (587)
Q Consensus 177 ~~~flPlFF~~~Gl~~dl~~l~~~--~~~~~~~~l~~~a~~~K~l~~~l~~~~~~~~~~~a~~lglll~~kG~~~li~~~ 254 (587)
.++|+-+||+++|+..+++.+... .... ...+..+...+..+.+...++.+|++..-++..|-.--.-|+=.-+...
T Consensus 66 ~~~lm~~fFatigLga~~~~l~~gg~~l~~-~~~~~~~l~~~Qn~vGv~la~~~gl~P~~Gll~gsi~~~GGHGTAaA~g 144 (398)
T TIGR00210 66 RDPLMLIFFTTIGLSANFKSLLKGGKPLLI-FLATAVGFLVIQNAVGIGMASLLGQAPLMGLLAGSITLSGGHGTGAAWS 144 (398)
T ss_pred HHHHHHHHHHHhhhcCChHHHHhChHHHHH-HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHhhCccCCCCCcHHHHHH
Confidence 368899999999999999887643 2221 2333334556677777777889999988887754222222333222222
Q ss_pred Hhh-h-cCCCCHHHHH--HHHHHHHHHHHHHHHHHHHhcc
Q 043315 255 RWR-I-RKLIDKDTFT--LAMLTHTAVTAVRTPLISLYYT 290 (587)
Q Consensus 255 i~~-~-~gli~~~~f~--~lvl~~lvtt~i~~plv~~ly~ 290 (587)
-.. + .|.-+..... ...+-.+..+++..|+.+++.|
T Consensus 145 ~~f~e~~G~~~a~~lgla~AT~GLv~g~liGgpi~~~lir 184 (398)
T TIGR00210 145 PVFYDNYGFRNATEIAIACATFGLVFGGIIGGPVAKFLII 184 (398)
T ss_pred HHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223 3 4644433322 2223334556778899999775
No 85
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=75.72 E-value=1.1e+02 Score=32.27 Aligned_cols=34 Identities=3% Similarity=-0.150 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhhh
Q 043315 212 ASYLGKFVGSLLIWVFIKASIPNAVIFSCILSLK 245 (587)
Q Consensus 212 ~a~~~K~l~~~l~~~~~~~~~~~a~~lglll~~k 245 (587)
+-.+.-+..+++.++.+|++.+|+.++.+--..|
T Consensus 254 l~~~~~~~lg~~~~r~~~l~~~~~~a~~~e~g~q 287 (328)
T TIGR00832 254 IYFYIMFFLTFALAKKLGLPYSITAPAAFTGASN 287 (328)
T ss_pred HHHHHHHHHHHHHHHHhCcChhhhhhheehhhhh
Confidence 3344556777778899999998888776654444
No 86
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=74.78 E-value=10 Score=35.62 Aligned_cols=89 Identities=17% Similarity=0.140 Sum_probs=56.5
Q ss_pred hhHHHHHHHhhhhcCCCC---CchhHHHHHHHHHHHHHHHHHHHHHhccccccccc---ccch-hHHHHHHHHHHHHHHH
Q 043315 145 TTYLLGALLMGLIIPPGP---PLGIAIIERFELVIFHFFLPFFYIRIGQYTNLSSI---QNGS-RLISFEIIIGASYLGK 217 (587)
Q Consensus 145 ~~~ilGAFlaGL~lp~~~---p~~~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l---~~~~-~~~~~~~l~~~a~~~K 217 (587)
+-..-|+.++|+++..-. |..-.+-+....+.+++.+-+|...+|++.-...+ .... +.. .....++.++.-
T Consensus 21 LG~~~G~L~vgL~~G~~~~~~p~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~-~~~g~~v~~~~~ 99 (154)
T TIGR01625 21 LGNAGGVLFVGLLLGHFGATGPLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLR-INGGALITVVPT 99 (154)
T ss_pred ecccHHHHHHHHHHHhccccCCcceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHH-HHHHHHHHHHHH
Confidence 333558888888887642 33334444566667889999999999999875433 3323 222 333344444555
Q ss_pred HHHHHHHHHHhCCChHH
Q 043315 218 FVGSLLIWVFIKASIPN 234 (587)
Q Consensus 218 ~l~~~l~~~~~~~~~~~ 234 (587)
++..++..+++|+++..
T Consensus 100 ~~~~~~~~~~~~~~~~~ 116 (154)
T TIGR01625 100 LLVAVALIKLLRINYAL 116 (154)
T ss_pred HHHHHHHHHHhCCCHHH
Confidence 66677777889998653
No 87
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=70.53 E-value=1.2e+02 Score=31.71 Aligned_cols=137 Identities=12% Similarity=-0.015 Sum_probs=76.6
Q ss_pred hHHHHHHHhhhhcCCC-CCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 043315 146 TYLLGALLMGLIIPPG-PPLGIAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQNGSRLISFEIIIGASYLGKFVGSLLI 224 (587)
Q Consensus 146 ~~ilGAFlaGL~lp~~-~p~~~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~~~~~~~~~~l~~~a~~~K~l~~~l~ 224 (587)
+|.+=|.++|+++.-. .+....+.+-++.+ .+.-.|+-...+|+.++...+.. .+.. .....++-.+.-.+.+++.
T Consensus 182 nP~iia~i~Gl~~~~~~i~lP~~l~~~l~~l-g~~~~plaLl~lG~~l~~~~~~~-~~~~-~~~~~~~klil~P~i~~~~ 258 (321)
T TIGR00946 182 FPPLWAPLLSVILSLVGFKMPGLILKSISIL-SGATTPMALFSLGLALSPRKIKL-GVRD-AILALIVRFLVQPAVMAGI 258 (321)
T ss_pred CCChHHHHHHHHHHHHhhcCcHHHHHHHHHH-HHHHHHHHHHHHHHhhChhhhcc-ChHH-HHHHHHHHHHHHHHHHHHH
Confidence 4555577777777753 23446677777776 67789999999999998766542 2222 2223333333333344555
Q ss_pred HHHhCCChHHHHHHHHHhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043315 225 WVFIKASIPNAVIFSCILSLKGIMDLIFILRWRIRKLIDKDTFTLAMLTHTAVTAVRTPLISLY 288 (587)
Q Consensus 225 ~~~~~~~~~~a~~lglll~~kG~~~li~~~i~~~~gli~~~~f~~lvl~~lvtt~i~~plv~~l 288 (587)
...++.+.... ...+++++ --.....+..+.+.|. |++..+..+....+.++++-|++-++
T Consensus 259 ~~~~~l~~~~~-~~~vl~aa-~P~a~~~~i~A~~y~~-~~~~aa~~v~~sT~ls~~tlp~~~~l 319 (321)
T TIGR00946 259 SKLIGLRGLEL-SVAILQAA-LPGGAVAAVLATEYEV-DVELASTAVTLSTVLSLISLPLFIIL 319 (321)
T ss_pred HHHhCCChHHH-HHHHHHHc-CChhhHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677764332 22233221 1222333334445553 66666666666666666666665543
No 88
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=67.78 E-value=49 Score=32.23 Aligned_cols=84 Identities=12% Similarity=0.186 Sum_probs=59.2
Q ss_pred chHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHhhHHHH-HHHhhccccCCchHHHHH
Q 043315 3 TTRILQVAKNALSVGMPCFLLSFNFTISLTLVLRENIPGMVGGSFPFLLSMVLSLNYFPVV-HALSELNLLTSDLSQLAI 81 (587)
Q Consensus 3 ~~~l~~~~~~a~~ig~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts~pVv-~iL~el~ll~s~~Grlal 81 (587)
.+.+++.+++++.+.+.+++-+++.|..++.+++.. ..+++.++.-+.= +... .++.|+ .+-++|.++.
T Consensus 48 l~~l~~~g~~~Llipl~tIlGSllgg~l~~~ll~~~------~~~~lav~sG~Gw--YSlsg~~i~~~--~~~~~G~iaf 117 (191)
T PF03956_consen 48 LRQLRSLGKRALLIPLATILGSLLGGLLASLLLGLS------LKESLAVASGFGW--YSLSGVLITQL--YGPELGTIAF 117 (191)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC------HHHHHHHHccCcH--HHhHHHHHHhh--hCHHHHHHHH
Confidence 356778889999999999999999999999888542 2455555543322 1122 233443 3668999999
Q ss_pred HHHHHHHHHHHHHHH
Q 043315 82 SCAILHKTIGWLSVA 96 (587)
Q Consensus 82 s~avi~Di~~~ill~ 96 (587)
=+=++.|++++++.-
T Consensus 118 l~n~~RE~~a~~~~P 132 (191)
T PF03956_consen 118 LSNLFREILAIILIP 132 (191)
T ss_pred HHHHHHHHHHHHHHH
Confidence 998888988876643
No 89
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=66.89 E-value=88 Score=33.83 Aligned_cols=100 Identities=10% Similarity=0.184 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-hHHHHHHHHHh---hhhhh
Q 043315 172 FELVIFHFFLPFFYIRIGQYTNLSSIQNGSRLISFEIIIGASYLGKFVGSLLIWVFIKAS-IPNAVIFSCIL---SLKGI 247 (587)
Q Consensus 172 l~~~~~~~flPlFF~~~Gl~~dl~~l~~~~~~~~~~~l~~~a~~~K~l~~~l~~~~~~~~-~~~a~~lglll---~~kG~ 247 (587)
+.+.+++.++|+-....=++.|++.+...... .+...+++.++=.+|+.++...++.. -.|....+-.+ -.-|.
T Consensus 52 ~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~--~l~~F~~~~~g~viG~~va~~l~~~~l~~~~wk~ag~l~gsyiGGs 129 (378)
T PF05684_consen 52 VYDFVWTYLVPLAIPLLLLSADLRRILRLGGR--LLLAFLIGAVGTVIGAVVAFLLFGGFLGPEGWKIAGMLAGSYIGGS 129 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHhhHH--HHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhcccCch
Confidence 34455667777777777788999988654333 34455556677777887777777654 23443333333 33466
Q ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Q 043315 248 MDLIFILRWRIRKLIDKDTFTLAMLTHTA 276 (587)
Q Consensus 248 ~~li~~~i~~~~gli~~~~f~~lvl~~lv 276 (587)
.-++...-+++ .+++.|+.++.+=.+
T Consensus 130 ~N~~Av~~al~---~~~~~~~a~~aaDnv 155 (378)
T PF05684_consen 130 VNFVAVAEALG---VSDSLFAAALAADNV 155 (378)
T ss_pred hHHHHHHHHHC---CCHHHHHHHHHHHHH
Confidence 66666665554 467777766554433
No 90
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=66.88 E-value=19 Score=32.44 Aligned_cols=79 Identities=11% Similarity=0.129 Sum_probs=38.9
Q ss_pred hHHHHHHHHhhccCCCceEEEEEEecChHHHHHHHHhhc--CCCcEEEEcccCCCCCccccCCCCCCCCCccc-cccccc
Q 043315 495 DDNVINDFKSRNLGNACVLCHHVDVTNTLEAWEVIRSSD--NDYDLVVVGKRRRPNSSRERDMTPWTDYEELR-VIGDML 571 (587)
Q Consensus 495 d~~~~~~~~~~~~~~~~v~y~e~~v~~~~~~~~~i~~~~--~~~dLviVGr~~~~~s~~~~gl~~w~e~~eLG-~iGd~L 571 (587)
-++.++++...... ..+.+...++. +.+..+.|-+.+ .+.||+++|+++.. |+.. --+| -+.+-+
T Consensus 63 ~~~~l~~~~~~~~~-~~~~~~~~~~~-g~~~~~~I~~~a~~~~~dlIV~Gs~g~~------~l~~----~~~gssva~~V 130 (146)
T cd01989 63 AKELLLPYRCFCSR-KGVQCEDVVLE-DDDVAKAIVEYVADHGITKLVMGASSDN------HFSM----KFKKSDVASSV 130 (146)
T ss_pred HHHHHHHHHHHHhh-cCCeEEEEEEe-CCcHHHHHHHHHHHcCCCEEEEeccCCC------ceee----cccCCchhHHH
Confidence 44566666543211 23344444443 222333333333 34799999998742 2211 1234 455665
Q ss_pred ccCCCCCCCccEEEeC
Q 043315 572 ASQDFCGGMNPVLVVQ 587 (587)
Q Consensus 572 as~d~~~~~~svLVvq 587 (587)
.-. ++..++|||||
T Consensus 131 i~~--a~~~c~Vlvv~ 144 (146)
T cd01989 131 LKE--APDFCTVYVVS 144 (146)
T ss_pred Hhc--CCCCceEEEEe
Confidence 533 23226899986
No 91
>PRK04972 putative transporter; Provisional
Probab=66.24 E-value=71 Score=36.42 Aligned_cols=82 Identities=10% Similarity=0.047 Sum_probs=52.4
Q ss_pred hhHHHHHHHhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccc---cchhHHHHHHHHHHHHHHHHHHH
Q 043315 145 TTYLLGALLMGLIIPPGPPLGIAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQ---NGSRLISFEIIIGASYLGKFVGS 221 (587)
Q Consensus 145 ~~~ilGAFlaGL~lp~~~p~~~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~---~~~~~~~~~~l~~~a~~~K~l~~ 221 (587)
+-..-|+.++|+++....+. +.+.+..+++-+|...+|++.-...+. ...+.+ . ++.++.++.-.+.+
T Consensus 37 LG~~~g~L~vgl~~g~~~~~-------~~~~~~~~gl~lF~~~vG~~~Gp~F~~~l~~~g~~~-~-~~~~~~~~~~~~~~ 107 (558)
T PRK04972 37 LGNSIGVLVVSLLLGQQHFS-------INTDALNLGFMLFIFCVGVEAGPNFFSIFFRDGKNY-L-MLALVMVGSALVIA 107 (558)
T ss_pred cCcchHHHHHHHHHHhCCCC-------CChHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHH-H-HHHHHHHHHHHHHH
Confidence 34456899999999875321 234456799999999999998765443 223433 2 22333333445556
Q ss_pred HHHHHHhCCChHHH
Q 043315 222 LLIWVFIKASIPNA 235 (587)
Q Consensus 222 ~l~~~~~~~~~~~a 235 (587)
++..+++|+++..+
T Consensus 108 ~~~~~~~~~~~~~~ 121 (558)
T PRK04972 108 LGLGKLFGWDIGLT 121 (558)
T ss_pred HHHHHHhCCCHHHH
Confidence 66778899986543
No 92
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=66.12 E-value=1.1e+02 Score=30.55 Aligned_cols=111 Identities=14% Similarity=0.018 Sum_probs=82.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhh
Q 043315 165 GIAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQNGSRLISFEIIIGASYLGKFVGSLLIWVFIKASIPNAVIFSCILSL 244 (587)
Q Consensus 165 ~~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~~~~~~~~~~l~~~a~~~K~l~~~l~~~~~~~~~~~a~~lglll~~ 244 (587)
++.+..-+++-+-.+-+|+|= +++.+. ..|.. +..-++++.+.-++.+++.++++|.+.. +. ..+.+
T Consensus 61 ~~~i~~lLgPAtVAlAvPLYk-------q~~~ik-~~w~~-I~~g~~vGs~~ai~s~~llak~~g~~~~--~~--~Sl~P 127 (230)
T COG1346 61 GQWINFLLGPATVALAVPLYK-------QRHLIK-RHWKP-ILAGVLVGSVVAIISGVLLAKLFGLSPE--LI--LSLLP 127 (230)
T ss_pred cHHHHHHHHHHHHHHhhHHHH-------HHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCHH--HH--HHhcc
Confidence 466667777766777777762 333443 24555 5555556666778888888999998754 33 44689
Q ss_pred hhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043315 245 KGIMDLIFILRWRIRKLIDKDTFTLAMLTHTAVTAVRTPLISLY 288 (587)
Q Consensus 245 kG~~~li~~~i~~~~gli~~~~f~~lvl~~lvtt~i~~plv~~l 288 (587)
|....=+...+..+.|=+++=+-...+++-++.+.+.|++.+.+
T Consensus 128 kSvTTpiAm~vs~~iGGip~ltav~Vi~tGi~Gavlg~~llk~~ 171 (230)
T COG1346 128 KSVTTPIAMEVSESIGGIPALTAVFVILTGILGAVLGPLLLKLL 171 (230)
T ss_pred cccccHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999988888888888888888889998875
No 93
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=65.68 E-value=1.9e+02 Score=30.87 Aligned_cols=150 Identities=18% Similarity=0.077 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHhChh--HHHHHHHhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccc--hhHHHHH
Q 043315 132 GALVMGFLSDAIGTT--YLLGALLMGLIIPPGPPLGIAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQNG--SRLISFE 207 (587)
Q Consensus 132 ~~~~~a~lae~~G~~--~ilGAFlaGL~lp~~~p~~~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~~--~~~~~~~ 207 (587)
..++.+.+...+++. ..+||+++|..+.-+..+.-++-+-+..+ -.-+.-..+|.++|-..+... .... .+
T Consensus 196 ~~~~~g~l~~~lr~Pa~~ll~~l~l~a~v~~~~~~~~~lP~wl~~v----a~~~iG~~IG~~f~~~~l~~~~r~~~~-~~ 270 (352)
T COG3180 196 AALLGGLLGKLLRFPAPTLLGPLLLGAIVHFGGGITIQLPAWLLAV----AQALIGALIGSRFDRSILREAKRLLPA-IL 270 (352)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHhhcccceeeeCCHHHHHH----HHHHHHHHHcccccHHHHHHhHhhcch-HH
Confidence 666677777777764 46999999999987642322222222222 223344678999997665422 1221 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhhhhhHHHHHHHHhhhcCCCCHHHHHHH-HHHHHHHHHHHHHHHH
Q 043315 208 IIIGASYLGKFVGSLLIWVFIKASIPNAVIFSCILSLKGIMDLIFILRWRIRKLIDKDTFTLA-MLTHTAVTAVRTPLIS 286 (587)
Q Consensus 208 ~l~~~a~~~K~l~~~l~~~~~~~~~~~a~~lglll~~kG~~~li~~~i~~~~gli~~~~f~~l-vl~~lvtt~i~~plv~ 286 (587)
+.++..++.-.+.+++..++.++++.+++ +..++-|.-+++....+.+ .|...-..+ ++=.++...+.|++.|
T Consensus 271 v~ii~l~~~~~~~a~ll~~~~~i~~~ta~---La~sPGGl~~ma~~A~~l~---ad~a~V~a~q~lRll~il~i~p~l~r 344 (352)
T COG3180 271 VSIIALMAIAAGMAGLLSWLTGIDLNTAY---LATSPGGLDTMAAIAAALG---ADPAFVMALQVLRLLFILLLGPALAR 344 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHH---HHcCCCcHHHHHHHHHHcC---CChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455667777888888899988875 4568888888877665554 233222211 1122222344588887
Q ss_pred Hhcccc
Q 043315 287 LYYTPY 292 (587)
Q Consensus 287 ~ly~p~ 292 (587)
++.++.
T Consensus 345 ~l~~~~ 350 (352)
T COG3180 345 FLSKRA 350 (352)
T ss_pred HHHHHc
Confidence 766543
No 94
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=62.93 E-value=72 Score=35.07 Aligned_cols=110 Identities=15% Similarity=0.161 Sum_probs=67.9
Q ss_pred HHHHHHHHHhChhHHHHHHHhhhhcCCCCCchhHHH--HHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHH
Q 043315 134 LVMGFLSDAIGTTYLLGALLMGLIIPPGPPLGIAII--ERFELVIFHFFLPFFYIRIGQYTNLSSIQNGSRLISFEIIIG 211 (587)
Q Consensus 134 ~~~a~lae~~G~~~ilGAFlaGL~lp~~~p~~~~l~--ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~~~~~~~~~~l~~ 211 (587)
..++.++..+|....+==...|++.... .++..-. ..+..++..+-+.+-..-.|++++++.+....+.. ..+-.+
T Consensus 20 if~s~~ssrfGvP~LllFl~iGm~aG~d-Glg~I~fdNy~~Ay~vg~lALaiILfdgG~~T~lss~r~a~~pa-lsLATl 97 (574)
T COG3263 20 IFSSLISSRFGVPLLLLFLSIGMLAGVD-GLGGIEFDNYPFAYMVGNLALAIILFDGGFGTQLSSFRVAAGPA-LSLATL 97 (574)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHcCCC-cccccccCccHHHHHHHHHHHHHHhhcCccCCcHHHHHHHhhhh-HHHHHH
Confidence 3444556677877766656667777664 2221110 23444556677777778899999998876433332 212222
Q ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhhh
Q 043315 212 ASYLGKFVGSLLIWVFIKASIPNAVIFSCILSLK 245 (587)
Q Consensus 212 ~a~~~K~l~~~l~~~~~~~~~~~a~~lglll~~k 245 (587)
..++.-.+.+..+.+.++.+|-|++.+|.+....
T Consensus 98 GVl~Ts~Ltg~aA~~ll~l~wle~~LiGAiVgST 131 (574)
T COG3263 98 GVLITSGLTGVAAAYLLNLDWLEGLLIGAIVGST 131 (574)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHhhccc
Confidence 2233445556667788899999999999886543
No 95
>COG0679 Predicted permeases [General function prediction only]
Probab=62.44 E-value=1.5e+02 Score=31.04 Aligned_cols=106 Identities=14% Similarity=0.144 Sum_probs=65.9
Q ss_pred hHHHHHHHhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 043315 146 TYLLGALLMGLIIPPGPPLGIAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQNGSRLISFEIIIGASYLGKFVGSLLIW 225 (587)
Q Consensus 146 ~~ilGAFlaGL~lp~~~p~~~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~~~~~~~~~~l~~~a~~~K~l~~~l~~ 225 (587)
-+++.-...|-.+.+.....++-.+-++.++..+.+|.-+...=.+.+.+.. ..+.. .+..++..++.=++...+..
T Consensus 10 lpi~lii~lGy~~~r~~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~ 86 (311)
T COG0679 10 LPIFLIILLGYLLKRFGILDEEAARGLSRLVVYVALPALLFNSIATADLSGL--ADLGL-IVASLVATLLAFFLLALIGR 86 (311)
T ss_pred HHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhHHHHHHHHHhCCcchh--hhHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3455566677777776666777777899999999999988887777776654 12332 33333333444455555555
Q ss_pred HHhCCChHHH--HHHHHHhhhhhhHHHHHHH
Q 043315 226 VFIKASIPNA--VIFSCILSLKGIMDLIFIL 254 (587)
Q Consensus 226 ~~~~~~~~~a--~~lglll~~kG~~~li~~~ 254 (587)
++.+.+.++. ..++...+.-|-+.+-++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~N~g~lg~pi~~ 117 (311)
T COG0679 87 FLFKLDKRETVIFALASAFPNIGFLGLPVAL 117 (311)
T ss_pred HHhccchhhHHHHHHHHHhcccchhhHHHHH
Confidence 6666666544 5555555666666644433
No 96
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=62.41 E-value=2.1e+02 Score=30.19 Aligned_cols=85 Identities=12% Similarity=0.102 Sum_probs=44.7
Q ss_pred HHHHHhhhhcCCCCCchhHHHHHHHHHH-----HHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHH
Q 043315 149 LGALLMGLIIPPGPPLGIAIIERFELVI-----FHFFLPFFYIRIGQYTNLSSIQNGSRLISFEIIIGASYLGKFVGSLL 223 (587)
Q Consensus 149 lGAFlaGL~lp~~~p~~~~l~ekl~~~~-----~~~flPlFF~~~Gl~~dl~~l~~~~~~~~~~~l~~~a~~~K~l~~~l 223 (587)
+-||++|..+.+..| +..++.++.. ..+++-+|-+.++..-++ .+.... +++..++-...=+..+|.
T Consensus 171 llP~~LG~~~r~~~~---~~~~~~~~~l~~vs~~~illIv~~~~s~~~~~~---~~~~~~--v~~~v~~~n~lg~~~gy~ 242 (319)
T COG0385 171 LLPFVLGQLLRPLLP---KWVERLKKALPPVSVLSILLIVYAAFSAAVENG---IWSGLL--IFVAVILHNLLGLLLGYF 242 (319)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhh---hHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 569999999886533 3333333221 123333333333333332 111121 222222222334777888
Q ss_pred HHHHhCCChHHHHHHHHH
Q 043315 224 IWVFIKASIPNAVIFSCI 241 (587)
Q Consensus 224 ~~~~~~~~~~~a~~lgll 241 (587)
.+|++|++..|...+++-
T Consensus 243 ~ar~~g~~~a~~iti~ie 260 (319)
T COG0385 243 GARLLGFDKADEITIAIE 260 (319)
T ss_pred HHHHhCCChhheeeEEEe
Confidence 899999999887765543
No 97
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=62.26 E-value=85 Score=32.90 Aligned_cols=34 Identities=15% Similarity=0.313 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccccccccccc
Q 043315 166 IAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQNG 200 (587)
Q Consensus 166 ~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~~ 200 (587)
+++.+-+..+ +.+++-+=|+.+|+++|++.+...
T Consensus 264 ~~~~~~~~~~-s~~~~~~A~aaiGl~~~~~~l~~~ 297 (305)
T PF03601_consen 264 AAVVSALKSL-SKWLFALAMAAIGLSTNFKDLKQV 297 (305)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHhhcCcHHHHHhc
Confidence 5666667766 778888999999999999988643
No 98
>TIGR00930 2a30 K-Cl cotransporter.
Probab=62.20 E-value=3.7e+02 Score=32.91 Aligned_cols=102 Identities=7% Similarity=0.057 Sum_probs=64.9
Q ss_pred cccceeeecCCcccccccccccCCCCCCCCCHHHHHHHHHHhcCCCCCCcEEEEEEeeeccCCCccccccccccccccCC
Q 043315 316 ELRKNLMENTPITQHKIYVENSKSGEKPRPFVHSLITLLKAFNSSEMSPLCACVLHLVELVGRAAPLLVPHNTHKRKIKE 395 (587)
Q Consensus 316 elril~c~~~~~~~~~v~~~~~~~~~~~~~~v~~li~Ll~~~~~~~~sp~~v~~lhlvel~~r~s~~l~~~~~~~~~~~~ 395 (587)
--|+|+. +.+|+ +-+.++++...+.+. ..+ ..+.|+++-+.+.. .
T Consensus 575 rPqiLvl---------~~~p~---------~~~~Ll~f~~~l~~~--~gl-~i~~~v~~~~~~~~-----~--------- 619 (953)
T TIGR00930 575 RPQCLVL---------TGPPV---------CRPALLDFASQFTKG--KGL-MICGSVIQGPRLEC-----V--------- 619 (953)
T ss_pred CCeEEEE---------eCCCc---------CcHHHHHHHHHhccC--CcE-EEEEEEecCchhhh-----H---------
Confidence 3579999 99999 999999999999743 224 34458876432110 0
Q ss_pred CchhHHHHHHHhhhcCCceEEEEEEEEecCCChHHHHHHHHhh-----cCCCEEEeccCCCccc
Q 043315 396 NSTDRIMRAMTKFSKSSQVTIQPFILIAPYKTMYESISKLAQD-----EFIPFIILPSHQSHKM 454 (587)
Q Consensus 396 ~~~~~i~~~f~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e-----~~~~lIilp~h~~~~~ 454 (587)
.+.++..+..+.+-+. -.++.|..+.--.++.+++.++.+- -+.+.++++|..+|+.
T Consensus 620 ~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~~w~~ 681 (953)
T TIGR00930 620 KEAQAAEAKIQTWLEK--NKVKAFYAVVVADDLREGVRHLIQASGLGRMKPNTLVMGYKKDWRQ 681 (953)
T ss_pred HHHHHHHHHHHHHHHH--hCCCeEEEEecCCCHHHHHHHHHHhcCCCCCCCCEEEecCccchhh
Confidence 0111222222222112 2333444444447999999999987 5799999999999875
No 99
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=60.35 E-value=2.3e+02 Score=30.33 Aligned_cols=146 Identities=16% Similarity=0.123 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHhChh--HHHH-HHHhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhccccccccccc--chhHHHH
Q 043315 132 GALVMGFLSDAIGTT--YLLG-ALLMGLIIPPGPPLGIAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQN--GSRLISF 206 (587)
Q Consensus 132 ~~~~~a~lae~~G~~--~ilG-AFlaGL~lp~~~p~~~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~--~~~~~~~ 206 (587)
+.+..+++.+..|+. .++| +.++|++..-. +..-.+-..+...+ .-+-=..+|..+..+.+.. ..|.. .
T Consensus 17 ls~~~g~l~~~~~vPa~~mlG~~l~a~~v~~~~-~~~l~~P~~l~~~~----q~ilG~~ig~~~t~s~l~~l~~~w~~-~ 90 (352)
T COG3180 17 LSLLGGWLLTLLHVPAAWMLGAPLLAGIVAGLR-GLTLPLPRGLFKAG----QVILGIMIGASLTPSVLDTLKSNWPI-V 90 (352)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc-cccccCChHHHHHH----HHHHHHHHhhhcCHHHHHHHHHcccH-H
Confidence 556778888888874 4688 67777666533 22212222222221 2233356677777666643 24665 6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhhhhhHHHHHHHHhhhcCCCCHHH--HHHHHHHHHHHHHHHHHH
Q 043315 207 EIIIGASYLGKFVGSLLIWVFIKASIPNAVIFSCILSLKGIMDLIFILRWRIRKLIDKDT--FTLAMLTHTAVTAVRTPL 284 (587)
Q Consensus 207 ~~l~~~a~~~K~l~~~l~~~~~~~~~~~a~~lglll~~kG~~~li~~~i~~~~gli~~~~--f~~lvl~~lvtt~i~~pl 284 (587)
+++++..++.-++.+++..|+.+.|..+++ +..++-|..+++... .|.|. |... +...+ =+++.+...|.+
T Consensus 91 ~~v~~~tl~~s~l~g~ll~r~~~~~~~Ta~---~gs~PGgas~m~~iA--~d~gA-d~~~VAl~Q~l-Rvl~Vvl~vplv 163 (352)
T COG3180 91 LVVLLLTLLSSILLGWLLKRFSILPGNTAF---LGSSPGGASAMVSIA--QDYGA-DLRLVALMQYL-RVLFVVLLAPLV 163 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcchhh---HhcCCchHHHHHHHH--HHhCC-ChhHHHHHHHH-HHHHHHHHHHHH
Confidence 677777788888888998888877766664 456777777766654 55553 2222 22221 122224556777
Q ss_pred HHHhcc
Q 043315 285 ISLYYT 290 (587)
Q Consensus 285 v~~ly~ 290 (587)
.++.++
T Consensus 164 ~~~~~~ 169 (352)
T COG3180 164 SRLFVG 169 (352)
T ss_pred HHHhcC
Confidence 777663
No 100
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=59.60 E-value=66 Score=36.72 Aligned_cols=82 Identities=11% Similarity=0.068 Sum_probs=55.0
Q ss_pred hhHHHHHHHhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccc---cchhHHHHHHHHHHHHHHHHHHH
Q 043315 145 TTYLLGALLMGLIIPPGPPLGIAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQ---NGSRLISFEIIIGASYLGKFVGS 221 (587)
Q Consensus 145 ~~~ilGAFlaGL~lp~~~p~~~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~---~~~~~~~~~~l~~~a~~~K~l~~ 221 (587)
+-.+-|.+++|+++.+..+ ++.+.+..+++-+|...+|++.-..-+. ...+.. .++.++.++.-++.+
T Consensus 35 LG~~~gvLfvgl~~G~~g~-------~i~~~v~~~gl~lFvy~vG~~~Gp~Ff~~l~~~g~~~--~~~a~~~~~~~~~~~ 105 (562)
T TIGR03802 35 LGGVAGSLIVAVLIGQLGI-------QIDPGVKAVFFALFIFAIGYEVGPQFFASLKKDGLRE--IILALVFAVSGLITV 105 (562)
T ss_pred cchHHHHHHHHHHHHhcCC-------CCChHHHHHHHHHHHHHhhhccCHHHHHHHHhccHHH--HHHHHHHHHHHHHHH
Confidence 3335678999999998533 2444567899999999999999865443 333443 233333444456777
Q ss_pred HHHHHHhCCChHHH
Q 043315 222 LLIWVFIKASIPNA 235 (587)
Q Consensus 222 ~l~~~~~~~~~~~a 235 (587)
+...+++|++...+
T Consensus 106 ~~~~~~~g~~~~~~ 119 (562)
T TIGR03802 106 YALAKIFGLDKGTA 119 (562)
T ss_pred HHHHHHhCCCHHHH
Confidence 88888999986543
No 101
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=58.31 E-value=86 Score=35.80 Aligned_cols=74 Identities=14% Similarity=0.133 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH---------HhCCChHHHHHHHHHhhhhhh
Q 043315 177 FHFFLPFFYIRIGQYTNLSSIQNGSRLISFEIIIGASYLGKFVGSLLIWV---------FIKASIPNAVIFSCILSLKGI 247 (587)
Q Consensus 177 ~~~flPlFF~~~Gl~~dl~~l~~~~~~~~~~~l~~~a~~~K~l~~~l~~~---------~~~~~~~~a~~lglll~~kG~ 247 (587)
..+|+|.-....|+.+|.+.+... +.. ++.+.+++++.-.+....... ..++++.+++.+|.++++..-
T Consensus 69 ~~~~LPpIlFe~g~~l~~~~f~~n-~~~-Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDP 146 (559)
T TIGR00840 69 FLYLLPPIVLDAGYFMPQRNFFEN-LGS-ILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDP 146 (559)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCch
Confidence 557889988999999999887643 222 222222222221111111111 125699999999999999888
Q ss_pred HHHHH
Q 043315 248 MDLIF 252 (587)
Q Consensus 248 ~~li~ 252 (587)
+....
T Consensus 147 VAVla 151 (559)
T TIGR00840 147 VAVLA 151 (559)
T ss_pred HHHHH
Confidence 76654
No 102
>COG1883 OadB Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit [Energy production and conversion]
Probab=58.10 E-value=5.2 Score=41.04 Aligned_cols=112 Identities=10% Similarity=0.146 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhhhhhHHHHHHHH
Q 043315 176 IFHFFLPFFYIRIGQYTNLSSIQNGSRLISFEIIIGASYLGKFVGSLLIWVFIKASIPNAVIFSCILSLKGIMDLIFILR 255 (587)
Q Consensus 176 ~~~~flPlFF~~~Gl~~dl~~l~~~~~~~~~~~l~~~a~~~K~l~~~l~~~~~~~~~~~a~~lglll~~kG~~~li~~~i 255 (587)
.+++|=++-|..+|..+|++.+.....- +++=..+-+| +..+++.+...|+..+|+..+|.+=..-|-..+.+.+.
T Consensus 82 ~~~i~PllIFmGvGAmTDFgpllanPkt---llLGaAAQ~G-IF~t~~~A~~lgf~~~eAasIgIIGGADGPTaIy~t~~ 157 (375)
T COG1883 82 GSGIFPLLIFMGVGAMTDFGPLLANPKT---LLLGAAAQFG-IFATVFGALALGFTPKEAASIGIIGGADGPTAIYLTNK 157 (375)
T ss_pred ccCcccHHHHhccchhcccchhhcCcHH---HHhhhHHHhc-hHHHHHHHHHhCCCHhhhhheeeeccCCCCceEEeccc
Confidence 4688999999999999999877532111 1122222222 33455667788999999999998877777776655442
Q ss_pred h-hh-cCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 043315 256 W-RI-RKLIDKDTFTLAMLTHTAVTAVRTPLISLYYTPYRKL 295 (587)
Q Consensus 256 ~-~~-~gli~~~~f~~lvl~~lvtt~i~~plv~~ly~p~~~~ 295 (587)
- -+ .+.|.-..|+- |+++ -++-||++|.+..+++|-
T Consensus 158 LAP~Ll~~iAvAAYSY---MALV-PiIQPpimkaLTt~~ERk 195 (375)
T COG1883 158 LAPELLGAIAVAAYSY---MALV-PIIQPPIMKALTTKEERK 195 (375)
T ss_pred cCHHHHHHHHHHHHHH---HHHh-hhcccHHHHHhcCHHHHH
Confidence 1 11 11222233443 3333 467899999987765553
No 103
>PRK04972 putative transporter; Provisional
Probab=57.80 E-value=89 Score=35.65 Aligned_cols=96 Identities=15% Similarity=0.079 Sum_probs=57.8
Q ss_pred ChhHHHHHHHhhhhcCC---CCCchhHHHHHHHHHHHHHHHHHHHHHhccccccccc---ccchhHHHHHHHHHHHHHHH
Q 043315 144 GTTYLLGALLMGLIIPP---GPPLGIAIIERFELVIFHFFLPFFYIRIGQYTNLSSI---QNGSRLISFEIIIGASYLGK 217 (587)
Q Consensus 144 G~~~ilGAFlaGL~lp~---~~p~~~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l---~~~~~~~~~~~l~~~a~~~K 217 (587)
++...-|+.++|+++.. ..|..-.+-+.-..+.+.+=+-+|.+.+|++--...+ ....|.+ .+.-+++.++.-
T Consensus 409 ~LG~agG~L~~gl~~g~~~~~~~~~~~~p~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~g~~~-~~~g~~~t~~~~ 487 (558)
T PRK04972 409 GIGNAAGLLFAGIMLGFLRANHPTFGYIPQGALNMVKEFGLMVFMAGVGLSAGSGINNGLGAVGGQM-LIAGLIVSLVPV 487 (558)
T ss_pred eccccHHHHHHHHHHHhccccCCCceeeCHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHH-HHHHHHHHHHHH
Confidence 34446789999999997 3344444555555556777788999999998764433 2223333 222233333444
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHh
Q 043315 218 FVGSLLIWVFIKASIPNAVIFSCIL 242 (587)
Q Consensus 218 ~l~~~l~~~~~~~~~~~a~~lglll 242 (587)
+++.++..+.+|+++.. .+|.+-
T Consensus 488 ~~~~~~~~~~~k~~~~~--~~G~~a 510 (558)
T PRK04972 488 VICFLFGAYVLRMNRAL--LFGAIM 510 (558)
T ss_pred HHHHHHHHHHHcCCHHH--HHHHHh
Confidence 55555555788998774 344443
No 104
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=57.66 E-value=2.6e+02 Score=29.73 Aligned_cols=34 Identities=18% Similarity=0.276 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccccccccccc
Q 043315 166 IAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQNG 200 (587)
Q Consensus 166 ~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~~ 200 (587)
+...+-+..+ +.+|+-+=++.+|+++|++.+...
T Consensus 272 ~~~~~~l~~~-~~~ll~~AmaaiGl~t~~~~l~~~ 305 (335)
T TIGR00698 272 GEVVQALVPL-DTFLLATAMAALGLTTNVSAVKKA 305 (335)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHhhcCcHHHHHHc
Confidence 3455556665 678888999999999999998643
No 105
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=55.85 E-value=1.4e+02 Score=31.34 Aligned_cols=133 Identities=16% Similarity=0.126 Sum_probs=78.6
Q ss_pred HHHHHHhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccc-hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043315 148 LLGALLMGLIIPPGPPLGIAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQNG-SRLISFEIIIGASYLGKFVGSLLIWV 226 (587)
Q Consensus 148 ilGAFlaGL~lp~~~p~~~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~~-~~~~~~~~l~~~a~~~K~l~~~l~~~ 226 (587)
++||.+++.+..-..+..-..-.++.. +-..+-=+.+|.+++...+..- .|+...+++.+...+.-.+++++..|
T Consensus 2 llG~~ia~~~~~~~~~~~~~~p~~~r~----~~q~ilG~~iG~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r 77 (318)
T PF05145_consen 2 LLGPMIAVIIAALFGPLPLRVPRRLRN----AGQAILGVSIGSSFTPEVLAQLASWWPPMLLLLVVTLLLSLVGAWLLRR 77 (318)
T ss_pred chHHHHHHHHHHHhCCCccCCCHHHHH----HHHHHHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777776543333333333333 3345556788999988776532 33332555666667778888888899
Q ss_pred HhCCChHHHHHHHHHhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHH-HHHHHHHHHHHHHHHhcc
Q 043315 227 FIKASIPNAVIFSCILSLKGIMDLIFILRWRIRKLIDKDTFTLAML-THTAVTAVRTPLISLYYT 290 (587)
Q Consensus 227 ~~~~~~~~a~~lglll~~kG~~~li~~~i~~~~gli~~~~f~~lvl-~~lvtt~i~~plv~~ly~ 290 (587)
+.+++..+++. ...+-|..|++... .+.|. |...-+.+=. =.++.+...|+++.+..+
T Consensus 78 ~~~~d~~TA~~---~~~PGg~s~m~~la--~~~ga-d~~~Va~~q~lRl~~Vv~~vP~i~~~~~~ 136 (318)
T PF05145_consen 78 ISGLDRATAFF---ASMPGGLSEMVALA--EEYGA-DTRRVALVQSLRLLLVVLLVPFIASLLGG 136 (318)
T ss_pred HcCCChhHHHH---HcCCccHHHHHHHH--HHcCC-ChhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99998888754 44566777777544 55553 4332221111 111223456777777665
No 106
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=54.09 E-value=1.8e+02 Score=27.76 Aligned_cols=88 Identities=16% Similarity=0.105 Sum_probs=54.4
Q ss_pred hChhHHHHHHHhhhhcCCCC---CchhHHHHHHHHHHHHHHHHHHHHHhccccccccc---ccchhHHHHHHHHHHHHHH
Q 043315 143 IGTTYLLGALLMGLIIPPGP---PLGIAIIERFELVIFHFFLPFFYIRIGQYTNLSSI---QNGSRLISFEIIIGASYLG 216 (587)
Q Consensus 143 ~G~~~ilGAFlaGL~lp~~~---p~~~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l---~~~~~~~~~~~l~~~a~~~ 216 (587)
+.+-..-|+.++|+++..-. |.. +......+.+.+.+-+|...+|++.-..-+ ....+.+ .++-++.++.
T Consensus 21 ~~LG~a~G~L~vgL~~G~~~~~~~~~--~~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~--~~~~~~i~~~ 96 (169)
T PF06826_consen 21 FSLGAAGGVLFVGLILGALGRTGPIF--LPISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKL--LLLGVIITLV 96 (169)
T ss_pred eeccccHHHHHHHHHHHHhhhccCCC--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHH
Confidence 34445568888888888652 222 445566667889999999999999875433 2233333 2233333344
Q ss_pred HHHHHHHHHH-HhCCChHH
Q 043315 217 KFVGSLLIWV-FIKASIPN 234 (587)
Q Consensus 217 K~l~~~l~~~-~~~~~~~~ 234 (587)
-.+.+++.++ ++|++.-.
T Consensus 97 ~~~~~~~~~~~~~~l~~~~ 115 (169)
T PF06826_consen 97 PLLIALVIGRYLFKLNPGI 115 (169)
T ss_pred HHHHHHHHHHHHcCCCHHH
Confidence 4555566666 88988544
No 107
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=52.75 E-value=3.1e+02 Score=29.08 Aligned_cols=68 Identities=12% Similarity=0.201 Sum_probs=36.8
Q ss_pred HHHH-HHHHHHHHHHHhChhHHHHHHHhhhhcCCCCCchhHHHHHHHHHHHHHHHHHH-HHHhccccccccccc
Q 043315 128 VLAI-GALVMGFLSDAIGTTYLLGALLMGLIIPPGPPLGIAIIERFELVIFHFFLPFF-YIRIGQYTNLSSIQN 199 (587)
Q Consensus 128 i~~i-~~~~~a~lae~~G~~~ilGAFlaGL~lp~~~p~~~~l~ekl~~~~~~~flPlF-F~~~Gl~~dl~~l~~ 199 (587)
++-+ .+.+++.+. =.-.+.+|.+++|-.+.+. ..-+++.+-.+.-.... .-+| =.++|...+-+.+.+
T Consensus 196 ~Fpivv~~i~~ll~--P~a~pLig~Lm~GnllrEs-Gv~~rl~~taqn~l~ni-vTifLGl~vG~~~~A~~fL~ 265 (354)
T TIGR01109 196 LFPIVLLLLVALLI--PKALPLVGMLMFGNLMRES-GVVERLSKTASNELLNI-VTILLGLSVGAKMRADKFLT 265 (354)
T ss_pred HHHHHHHHHHHHHc--cchHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHH-HHHHHHHHhhhhccHHhhCC
Confidence 3434 444444432 2346789999999999987 33344444433322222 1222 256777777665543
No 108
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=51.30 E-value=1.5e+02 Score=33.88 Aligned_cols=88 Identities=16% Similarity=0.054 Sum_probs=53.0
Q ss_pred hHHHHHHHhhhhcCCCC---CchhHHHHHHHHHHHHHHHHHHHHHhcccccccccc---cchhHHHHHHHHHHHHHHHHH
Q 043315 146 TYLLGALLMGLIIPPGP---PLGIAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQ---NGSRLISFEIIIGASYLGKFV 219 (587)
Q Consensus 146 ~~ilGAFlaGL~lp~~~---p~~~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~---~~~~~~~~~~l~~~a~~~K~l 219 (587)
....|+.++|+++..-. |.--.+-+....+.+.+.+-+|.+.+|++.-...+. ...+.+ .+ +-++..+.=.+
T Consensus 416 g~~~g~l~~gl~~g~~~~~~~~~~~~p~~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~-~~-~g~~~~~~~~~ 493 (562)
T TIGR03802 416 GTGGGALISGLVFGWLRSKHPTFGNIPSSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTL-FL-LGIVVTILPLI 493 (562)
T ss_pred hhhHHHHHHHHHHHHhcccCCcceecCHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHH-HH-HHHHHHHHHHH
Confidence 45679999999998742 332235555555668899999999999998754332 223332 22 22222223334
Q ss_pred HHHHHH-HHhCCChHHH
Q 043315 220 GSLLIW-VFIKASIPNA 235 (587)
Q Consensus 220 ~~~l~~-~~~~~~~~~a 235 (587)
.+++.+ +++|+++...
T Consensus 494 ~~~~~~~~~~~~~~~~~ 510 (562)
T TIGR03802 494 ITMLIGKYVLKYDPALL 510 (562)
T ss_pred HHHHHHHHHhCCCHHHH
Confidence 444445 6889986543
No 109
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=48.65 E-value=1.2e+02 Score=31.58 Aligned_cols=109 Identities=16% Similarity=0.179 Sum_probs=66.6
Q ss_pred HHHHHHHhhhhc-CCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 043315 147 YLLGALLMGLII-PPGPPLGIAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQNGSRLISFEIIIGASYLGKFVGSLLIW 225 (587)
Q Consensus 147 ~ilGAFlaGL~l-p~~~p~~~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~~~~~~~~~~l~~~a~~~K~l~~~l~~ 225 (587)
+++.-...|..+ .+...+.++-.+.+..++..+.+|......-.+.+........+. ........+++-++.+++.+
T Consensus 12 pv~~ii~lG~~~~~r~~~~~~~~~~~l~~~v~~i~lP~lif~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~ 89 (321)
T TIGR00946 12 PILVVILLGYILGKRFGILDEEHASGINRFVINFALPLTIFHSISTTLADILQKSQSP--VVLFLWGAFSGSYALIWLIT 89 (321)
T ss_pred HHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 445566677777 465567788888999999999999999988887665311111121 22233334444555666666
Q ss_pred H-HhCCChHH--HHHHHHHhhhhhhHHHHHHHHhh
Q 043315 226 V-FIKASIPN--AVIFSCILSLKGIMDLIFILRWR 257 (587)
Q Consensus 226 ~-~~~~~~~~--a~~lglll~~kG~~~li~~~i~~ 257 (587)
+ +++.+.++ .+.++.....-|-+.+-+....+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~N~~~~GlPl~~~~~ 124 (321)
T TIGR00946 90 KPLFKADYGKLSGFLLVSALPNTAFIGYPLLLSLF 124 (321)
T ss_pred HHHHhcccchhhHHHHHhhhccceeehHHHHHHHh
Confidence 6 66766554 44444445555666665555444
No 110
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=47.21 E-value=1.2e+02 Score=36.07 Aligned_cols=117 Identities=12% Similarity=0.082 Sum_probs=72.6
Q ss_pred CccccceeeecCCcccccccccccCCCCCCCCCHHHHHHHHHHhcCCCCCCcEEEEEEeeeccCCCcccccccccccccc
Q 043315 314 NSELRKNLMENTPITQHKIYVENSKSGEKPRPFVHSLITLLKAFNSSEMSPLCACVLHLVELVGRAAPLLVPHNTHKRKI 393 (587)
Q Consensus 314 ~~elril~c~~~~~~~~~v~~~~~~~~~~~~~~v~~li~Ll~~~~~~~~sp~~v~~lhlvel~~r~s~~l~~~~~~~~~~ 393 (587)
....|||+| |.... +-..+|.=...+...-+ ...+|+|+..-..+..
T Consensus 246 ~~~e~ilvc---------I~~~~---------~~e~liR~a~RlA~~~~--a~~~av~v~~~~~~~~------------- 292 (890)
T COG2205 246 AARERILVC---------ISGSP---------GSEKLIRRAARLASRLH--AKWTAVYVETPELHRL------------- 292 (890)
T ss_pred cccceEEEE---------ECCCC---------chHHHHHHHHHHHHHhC--CCeEEEEEeccccccc-------------
Confidence 455799999 88777 77777777666654333 4468888743221111
Q ss_pred CCCchhHHHHHHHhhhcCCceEEEEEEEEecCCChHHHHHHHHhhcCCCEEEeccCCCcccc---ccchhHHHhhccCC
Q 043315 394 KENSTDRIMRAMTKFSKSSQVTIQPFILIAPYKTMYESISKLAQDEFIPFIILPSHQSHKMQ---QGGGFNCKIQNCAP 469 (587)
Q Consensus 394 ~~~~~~~i~~~f~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~~~~~---dg~~~n~~vl~~ap 469 (587)
.....+++-+.++- +...+-. ..+..+ .+..+.|.+.|++.+++-||+|=+++.++. .| .+.+++++++|
T Consensus 293 ~~~~~~~l~~~~~L-ae~lGae--~~~l~~--~dv~~~i~~ya~~~~~TkiViG~~~~~rw~~~~~~-~l~~~L~~~~~ 365 (890)
T COG2205 293 SEKEARRLHENLRL-AEELGAE--IVTLYG--GDVAKAIARYAREHNATKIVIGRSRRSRWRRLFKG-SLADRLAREAP 365 (890)
T ss_pred cHHHHHHHHHHHHH-HHHhCCe--EEEEeC--CcHHHHHHHHHHHcCCeeEEeCCCcchHHHHHhcc-cHHHHHHhcCC
Confidence 01122334433332 3322222 223334 789999999999999999999987664442 23 77788888776
No 111
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=46.30 E-value=3.2e+02 Score=27.46 Aligned_cols=111 Identities=12% Similarity=0.022 Sum_probs=78.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhh
Q 043315 165 GIAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQNGSRLISFEIIIGASYLGKFVGSLLIWVFIKASIPNAVIFSCILSL 244 (587)
Q Consensus 165 ~~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~~~~~~~~~~l~~~a~~~K~l~~~l~~~~~~~~~~~a~~lglll~~ 244 (587)
++.+..-+.+-+-.+-+|+|= +.+.+.. .|.. +++-++++.+.-++.+++.++++|.+.. +-..|.+
T Consensus 64 ~~~l~~lLgPAtVALAvPLY~-------q~~~lk~-~~~~-Il~~~~vG~~~~i~s~~~la~~lgl~~~----~~~Sl~p 130 (232)
T PRK04288 64 GDIISFFLEPATIAFAIPLYK-------KRDVLKK-YWWQ-ILGGIVVGSVCSVLIIYLVAKLIQLDNA----VMASMLP 130 (232)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-------hHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHCcCHH----HHHHHhh
Confidence 455555666666667777763 3333432 3444 4445555666777888888999998753 2355789
Q ss_pred hhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043315 245 KGIMDLIFILRWRIRKLIDKDTFTLAMLTHTAVTAVRTPLISLY 288 (587)
Q Consensus 245 kG~~~li~~~i~~~~gli~~~~f~~lvl~~lvtt~i~~plv~~l 288 (587)
|....=+...+..+.|-+..=+-...++.-++-..+.|++++++
T Consensus 131 KSVTtPIAm~is~~iGG~psLtA~~ViitGi~Gai~g~~llk~~ 174 (232)
T PRK04288 131 QAATTAIALPVSAGIGGIKEITSFAVIFNAVIIYALGAKFLKLF 174 (232)
T ss_pred HhhhHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999888777777777777888888888888874
No 112
>COG3329 Predicted permease [General function prediction only]
Probab=45.88 E-value=3.8e+02 Score=28.16 Aligned_cols=128 Identities=16% Similarity=0.183 Sum_probs=72.9
Q ss_pred HHHHHHhC--hhHHHHHHHhhhhcCCCC---CchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHH
Q 043315 137 GFLSDAIG--TTYLLGALLMGLIIPPGP---PLGIAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQNGSRLISFEIIIG 211 (587)
Q Consensus 137 a~lae~~G--~~~ilGAFlaGL~lp~~~---p~~~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~~~~~~~~~~l~~ 211 (587)
-++.++.| ++|.+.=|+.|++++-.. .+.+.+.+-+.. -+++.+ =..-|+.+.-+.+.. .... +..-+.
T Consensus 6 ~fl~~f~~nL~sP~llFf~~Gmlia~~ksdl~iP~~i~~~lsl---yLL~aI-G~kGGveir~snl~a-~v~~-~~~~~a 79 (372)
T COG3329 6 EFLMDFVGNLLSPTLLFFILGMLIAAFKSDLEIPEAIYQALSL---YLLLAI-GFKGGVEIRNSNLTA-MVLP-VALGVA 79 (372)
T ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHhccccCchHHHHHHHH---HHHHHH-hcccceeeecCCcch-hHHH-HHHHHH
Confidence 34445444 477788888888877531 112222222221 111111 112233333222321 1222 334444
Q ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhhhhhHHHHHHHHhhhcCCCCHHHHHHH
Q 043315 212 ASYLGKFVGSLLIWVFIKASIPNAVIFSCILSLKGIMDLIFILRWRIRKLIDKDTFTLA 270 (587)
Q Consensus 212 ~a~~~K~l~~~l~~~~~~~~~~~a~~lglll~~kG~~~li~~~i~~~~gli~~~~f~~l 270 (587)
+.++.-++..++..++.+++..|+.+.+-.-.....++++.+..-++.--+..+-|...
T Consensus 80 L~~li~~ia~f~l~kl~~vdtvdaaA~ag~yGsvS~~Tfaaa~t~Lee~giayeaym~A 138 (372)
T COG3329 80 LGFLIVFIAYFLLRKLPKVDTVDAAATAGTYGSVSAVTFAAAVTFLEESGIAYEAYMPA 138 (372)
T ss_pred HHHHHHHHHHHHHHHccccchHHHHHHHhhccchhHHHHHHHHHHHHHcCccHHHHHHH
Confidence 55666677778888888999999999999888888888888777776655565555443
No 113
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=45.67 E-value=3.2e+02 Score=28.62 Aligned_cols=49 Identities=20% Similarity=0.297 Sum_probs=31.7
Q ss_pred HHHHHHhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhccccccccccc
Q 043315 148 LLGALLMGLIIPPGPPLGIAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQN 199 (587)
Q Consensus 148 ilGAFlaGL~lp~~~p~~~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~ 199 (587)
++++.++|...|.-...+..+. .|.. ..+.+.+-|...|++++.+.+..
T Consensus 7 l~~ai~la~~~P~~g~~~~~~~--~~~~-~~~~v~~iFf~~Gl~L~~~~l~~ 55 (313)
T PF13593_consen 7 LLLAILLAYLFPAPGAAGGVIK--PEYV-IKYGVALIFFISGLSLPTEELKA 55 (313)
T ss_pred HHHHHHHHHHcCcccccCCccc--hhhh-HHHHHHHHHHHHcCCCCHHHHHH
Confidence 4667788888887544333332 1222 33447777888999999887753
No 114
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=45.44 E-value=2.8e+02 Score=29.44 Aligned_cols=86 Identities=16% Similarity=0.080 Sum_probs=47.5
Q ss_pred hHHHHHHHhhhhcCCCCCch-----hHHHHHHHHHHHHHHHHHHHHHhcccccccccccc-hhHHHHHHHHHHHHHHHHH
Q 043315 146 TYLLGALLMGLIIPPGPPLG-----IAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQNG-SRLISFEIIIGASYLGKFV 219 (587)
Q Consensus 146 ~~ilGAFlaGL~lp~~~p~~-----~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~~-~~~~~~~~l~~~a~~~K~l 219 (587)
++.+=|.++|+++.-.++.. ..+.+-++.+ .+...|+=.+..|..+........ .+.. ....+++-++.-.+
T Consensus 244 nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~l-g~~~~pl~l~~lG~~l~~~~~~~~~~~~~-~~~~~~~rlii~P~ 321 (385)
T PF03547_consen 244 NPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYL-GAAAVPLALFVLGASLARGPRKSALGWKP-SIIAVLVRLIILPL 321 (385)
T ss_pred CcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHH-HhhhHHHHHHHHHHHHhcCCcccchhhHH-HHHHHHHHHHHHHH
Confidence 44444555566655543322 5666667766 677899999999998875543321 2222 22223333333444
Q ss_pred HHHHHHHHhCCChH
Q 043315 220 GSLLIWVFIKASIP 233 (587)
Q Consensus 220 ~~~l~~~~~~~~~~ 233 (587)
.++...+.++++..
T Consensus 322 i~~~~~~~~~l~~~ 335 (385)
T PF03547_consen 322 IGIGIVFLLGLDGD 335 (385)
T ss_pred HHHHHHHHHCCCHH
Confidence 45555666676544
No 115
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=45.40 E-value=43 Score=35.00 Aligned_cols=50 Identities=14% Similarity=0.284 Sum_probs=33.8
Q ss_pred HHHHHHHhhccCCCceEEEEEEe---cChHHHHHHHHhhcC-----CCcEEEEcccCCC
Q 043315 497 NVINDFKSRNLGNACVLCHHVDV---TNTLEAWEVIRSSDN-----DYDLVVVGKRRRP 547 (587)
Q Consensus 497 ~~~~~~~~~~~~~~~v~y~e~~v---~~~~~~~~~i~~~~~-----~~dLviVGr~~~~ 547 (587)
++++..+.++.. -++.+-...| +...+++++|+..+. +||++|++|+.|.
T Consensus 30 D~~~~~~~r~~~-~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs 87 (319)
T PF02601_consen 30 DFLRTLKRRNPI-VEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGS 87 (319)
T ss_pred HHHHHHHHhCCC-cEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCC
Confidence 555555554332 3455556556 445678888888863 5999999999986
No 116
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=44.33 E-value=4.2e+02 Score=28.21 Aligned_cols=91 Identities=12% Similarity=0.185 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhChhHHHHHHHhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccc-hhHHHHHHHH
Q 043315 132 GALVMGFLSDAIGTTYLLGALLMGLIIPPGPPLGIAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQNG-SRLISFEIII 210 (587)
Q Consensus 132 ~~~~~a~lae~~G~~~ilGAFlaGL~lp~~~p~~~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~~-~~~~~~~~l~ 210 (587)
.+.+++.+. =.-.+.+|.+++|-.+.+. ..-+++.+-.+.-...+--=+.=..+|...+-+.+.+. ++. ++.+=
T Consensus 201 v~~~~~ll~--P~a~pLig~Lm~Gnl~rEs-gv~~rLs~taqn~l~nivTi~LGl~vGat~~a~~fL~~~tl~--I~~LG 275 (360)
T PF03977_consen 201 VTILVGLLL--PSAAPLIGMLMFGNLLRES-GVVERLSKTAQNELMNIVTIFLGLTVGATMTAETFLNPQTLK--ILVLG 275 (360)
T ss_pred HHHHHHHHc--cchHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHhcCHHHHH--HHHHH
Confidence 444444432 2446789999999999987 33344444333322222111122567777766555433 332 23333
Q ss_pred HHHHHHHHHHHHHHHHH
Q 043315 211 GASYLGKFVGSLLIWVF 227 (587)
Q Consensus 211 ~~a~~~K~l~~~l~~~~ 227 (587)
++++..-..++.+.+++
T Consensus 276 l~Af~~~tagGvl~~k~ 292 (360)
T PF03977_consen 276 LVAFAFSTAGGVLFAKL 292 (360)
T ss_pred HHHHHHHHhHHHHHHHH
Confidence 33444444444444443
No 117
>PRK10711 hypothetical protein; Provisional
Probab=42.52 E-value=3.6e+02 Score=27.16 Aligned_cols=138 Identities=15% Similarity=0.074 Sum_probs=71.9
Q ss_pred hhHHHHHHHhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHH---------Hhcccccc------cccc-----------
Q 043315 145 TTYLLGALLMGLIIPPGPPLGIAIIERFELVIFHFFLPFFYI---------RIGQYTNL------SSIQ----------- 198 (587)
Q Consensus 145 ~~~ilGAFlaGL~lp~~~p~~~~l~ekl~~~~~~~flPlFF~---------~~Gl~~dl------~~l~----------- 198 (587)
++..+||=...+++|=- ...+.+.+...++.-+.++-..+. ..|+.=++ +++.
T Consensus 62 l~~lLgPAtVALAvPLY-~q~~~lk~~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~~~~Sl~pkSVTtPIAm~is~~i 140 (231)
T PRK10711 62 LNDLLQPAVVALAFPLY-EQLHQIRARWKSIISICFIGSVVAMVTGTAVALWMGATPEIAASILPKSVTTPIAMAVGGSI 140 (231)
T ss_pred HHhhhhHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhhhhhHHHHHHHHHHh
Confidence 35578888888888866 455667777666655554444332 22222111 0110
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q 043315 199 NGSRLISFEIIIGASYLGKFVGSLLIWVFIKASIPNAVIFSCILSLKGIMDLIFILRWRIRKLIDKDTFTLAMLTHTAVT 278 (587)
Q Consensus 199 ~~~~~~~~~~l~~~a~~~K~l~~~l~~~~~~~~~~~a~~lglll~~kG~~~li~~~i~~~~gli~~~~f~~lvl~~lvtt 278 (587)
.+.....+..+++.+++|-+++-.+ .+++|++...+.-+++..++.|.=.--....+...|.++ --.|++..++|+
T Consensus 141 GG~~sLta~~ViitGi~Ga~~g~~l-lk~~rI~~~~A~G~alG~aaHaiGTAkA~e~~~~~Ga~s---sLam~l~Gi~ta 216 (231)
T PRK10711 141 GGIPAISAVCVIFVGILGAVFGHTL-LNAMRIRTKAARGLAMGTASHALGTARCAELDYQEGAFS---SLALVICGIITS 216 (231)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCCHHHHHHHHhHhhHHHHHHHHHHcCcHHHHHH---HHHHHHHHHHHH
Confidence 0001110233334444444444443 455666655555555555666554444444444444332 224677788888
Q ss_pred HHHHHHHHH
Q 043315 279 AVRTPLISL 287 (587)
Q Consensus 279 ~i~~plv~~ 287 (587)
++.|.+...
T Consensus 217 ~~~P~~~~l 225 (231)
T PRK10711 217 LIAPFLFPL 225 (231)
T ss_pred HHHHHHHHH
Confidence 888777665
No 118
>COG2431 Predicted membrane protein [Function unknown]
Probab=42.05 E-value=4.1e+02 Score=27.48 Aligned_cols=46 Identities=7% Similarity=0.219 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhhhhhHHHHHHH
Q 043315 209 IIGASYLGKFVGSLLIWVFIKASIPNAVIFSCILSLKGIMDLIFIL 254 (587)
Q Consensus 209 l~~~a~~~K~l~~~l~~~~~~~~~~~a~~lglll~~kG~~~li~~~ 254 (587)
+-++.+++-++|+.+++.+.++|+.++++++..+.=-......++.
T Consensus 168 l~~i~ilssliGG~iaa~~l~lpl~~~lAmasG~GWYSlsG~ll~~ 213 (297)
T COG2431 168 LAFITLLSSLIGGLIAAFLLDLPLTTGLAMASGFGWYSLSGILLTE 213 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhccchhhhhhHHHhc
Confidence 4444556788999999999999999999998876555555555444
No 119
>PRK10711 hypothetical protein; Provisional
Probab=41.95 E-value=3.8e+02 Score=26.98 Aligned_cols=111 Identities=10% Similarity=0.022 Sum_probs=77.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhh
Q 043315 165 GIAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQNGSRLISFEIIIGASYLGKFVGSLLIWVFIKASIPNAVIFSCILSL 244 (587)
Q Consensus 165 ~~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~~~~~~~~~~l~~~a~~~K~l~~~l~~~~~~~~~~~a~~lglll~~ 244 (587)
++.+..-+.+-+-.+-+|+|= +.+.+.. .|.. +.+-+.++.+.-++.+++.++++|.+..-. ..|.+
T Consensus 59 ~~~l~~lLgPAtVALAvPLY~-------q~~~lk~-~~~~-I~~~~~vG~~v~i~s~~~l~~~lg~~~~~~----~Sl~p 125 (231)
T PRK10711 59 SEVLNDLLQPAVVALAFPLYE-------QLHQIRA-RWKS-IISICFIGSVVAMVTGTAVALWMGATPEIA----ASILP 125 (231)
T ss_pred cHHHHhhhhHHHHHHHHHHHH-------hHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHCcCHHHH----HHHhh
Confidence 455555666666677777762 3333432 3444 444555666777888888999999875433 45789
Q ss_pred hhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043315 245 KGIMDLIFILRWRIRKLIDKDTFTLAMLTHTAVTAVRTPLISLY 288 (587)
Q Consensus 245 kG~~~li~~~i~~~~gli~~~~f~~lvl~~lvtt~i~~plv~~l 288 (587)
|....=+...+..+.|-+.+=+-...++.-++-..+.|++++++
T Consensus 126 kSVTtPIAm~is~~iGG~~sLta~~ViitGi~Ga~~g~~llk~~ 169 (231)
T PRK10711 126 KSVTTPIAMAVGGSIGGIPAISAVCVIFVGILGAVFGHTLLNAM 169 (231)
T ss_pred hhhhHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99998888888888887766666666677777778888888874
No 120
>TIGR00808 malonate_madM malonate transporter, MadM subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=40.67 E-value=40 Score=33.05 Aligned_cols=37 Identities=8% Similarity=0.118 Sum_probs=33.6
Q ss_pred CchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043315 2 DTTRILQVAKNALSVGMPCFLLSFNFTISLTLVLREN 38 (587)
Q Consensus 2 D~~~l~~~~~~a~~ig~~~~~ip~~~g~~~~~~l~~~ 38 (587)
|++++||.+..-.+.=+.+.++||+.|..+++.+++.
T Consensus 97 ~~~e~kkaG~~G~vsL~~G~v~~F~~Ga~vA~afGY~ 133 (254)
T TIGR00808 97 DVKEVKKAGKVGMVALLLGCVIPFVIGAMVAWAFGYR 133 (254)
T ss_pred cHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 7788999999888888999999999999999999875
No 121
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=40.59 E-value=77 Score=26.81 Aligned_cols=52 Identities=19% Similarity=0.211 Sum_probs=26.3
Q ss_pred cchHHHHHHHHhhccCCCceEEEEEEecChHHHHHHHHhhc-CCCcEEEEcccCC
Q 043315 493 ILDDNVINDFKSRNLGNACVLCHHVDVTNTLEAWEVIRSSD-NDYDLVVVGKRRR 546 (587)
Q Consensus 493 ~~d~~~~~~~~~~~~~~~~v~y~e~~v~~~~~~~~~i~~~~-~~~dLviVGr~~~ 546 (587)
...++.+++++..... ..+.+....+. +...-.+++..+ .++|++|+|.++.
T Consensus 52 ~~~~~~l~~~~~~~~~-~~~~~~~~~~~-~~~~~~i~~~~~~~~~dlvvig~~~~ 104 (130)
T cd00293 52 EEARALLEALREALAE-AGVKVETVVLE-GDPAEAILEAAEELGADLIVMGSRGR 104 (130)
T ss_pred HHHHHHHHHHHHHHhc-CCCceEEEEec-CCCHHHHHHHHHHcCCCEEEEcCCCC
Confidence 3445777777765311 12233333322 322223333232 4589999998764
No 122
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=40.52 E-value=4e+02 Score=26.84 Aligned_cols=39 Identities=8% Similarity=0.060 Sum_probs=25.3
Q ss_pred hhHHHHHHHhhhhcCCCCCchhHHHHHHHHHHHHHHHHHH
Q 043315 145 TTYLLGALLMGLIIPPGPPLGIAIIERFELVIFHFFLPFF 184 (587)
Q Consensus 145 ~~~ilGAFlaGL~lp~~~p~~~~l~ekl~~~~~~~flPlF 184 (587)
++..+||=..-+++|=- ...+.+.+...++.-+.++-.+
T Consensus 67 l~~lLgPAtVALAvPLY-~q~~~lk~~~~~Il~~~~vG~~ 105 (232)
T PRK04288 67 ISFFLEPATIAFAIPLY-KKRDVLKKYWWQILGGIVVGSV 105 (232)
T ss_pred HHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHH
Confidence 45578888888888865 4456666666666554444433
No 123
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=40.49 E-value=3.9e+02 Score=26.76 Aligned_cols=137 Identities=15% Similarity=0.117 Sum_probs=66.3
Q ss_pred hhHHHHHHHhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHH---------HHhccccccc-cc-----c-----------
Q 043315 145 TTYLLGALLMGLIIPPGPPLGIAIIERFELVIFHFFLPFFY---------IRIGQYTNLS-SI-----Q----------- 198 (587)
Q Consensus 145 ~~~ilGAFlaGL~lp~~~p~~~~l~ekl~~~~~~~flPlFF---------~~~Gl~~dl~-~l-----~----------- 198 (587)
++..+||=...+++|=- ...+.+.+...++..+.+.-..+ -..|+.-++. ++ .
T Consensus 61 l~~lLgPAtVALAvPLY-~~~~~lk~~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~~i~~Sl~pkSvTtpiAm~vs~~i 139 (226)
T TIGR00659 61 INDLLGPAVVALAIPLY-KQLPQIKKYWKEIILNVAVGSVIAIISGTLLALLLGLGPEIIASLLPKSVTTPIAMHVSEMI 139 (226)
T ss_pred HHHhhHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHhhhHHhhHHHHHHHHHHh
Confidence 45678898899999876 45666666666555444432222 1233332210 11 0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q 043315 199 NGSRLISFEIIIGASYLGKFVGSLLIWVFIKASIPNAVIFSCILSLKGIMDLIFILRWRIRKLIDKDTFTLAMLTHTAVT 278 (587)
Q Consensus 199 ~~~~~~~~~~l~~~a~~~K~l~~~l~~~~~~~~~~~a~~lglll~~kG~~~li~~~i~~~~gli~~~~f~~lvl~~lvtt 278 (587)
.+.....+..+++.+++|-+++-.+ .+++|++...+.-+++..+..|.=.--....+.+.|.++ --.|++..++|+
T Consensus 140 GG~~sLta~~vvitGi~Ga~~g~~l-l~~~~i~~~~A~GlalG~aaHaiGTa~a~e~~~~~Ga~s---sLam~l~gi~ta 215 (226)
T TIGR00659 140 GGIPAVTAVFVILTGLLGTVFGPMV-LRYFRVKNEIARGLLLGTSSHGLGTARCFELDSVAGAIS---SLSMVLCGIITS 215 (226)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCcHHHHHHHHhHHHHHHHHHHHHHcCchHHHHH---HHHHHHHHHHHH
Confidence 0001110233333344444444333 345566544444444444555544444444444333322 124677777877
Q ss_pred HHHHHHHH
Q 043315 279 AVRTPLIS 286 (587)
Q Consensus 279 ~i~~plv~ 286 (587)
++.|.+..
T Consensus 216 ~l~P~l~~ 223 (226)
T TIGR00659 216 WIAPFLFH 223 (226)
T ss_pred HHHHHHHH
Confidence 77766554
No 124
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=39.77 E-value=82 Score=26.93 Aligned_cols=39 Identities=31% Similarity=0.467 Sum_probs=24.6
Q ss_pred CCCcEEEEcccCCCCCccccCCCCCCCCCcccccccccccCCCCCCCccEEEe
Q 043315 534 NDYDLVVVGKRRRPNSSRERDMTPWTDYEELRVIGDMLASQDFCGGMNPVLVV 586 (587)
Q Consensus 534 ~~~dLviVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~Las~d~~~~~~svLVv 586 (587)
.++|++|+|+++.. + |.+ -=+|-..+-++-. |+ ++||||
T Consensus 101 ~~~dliv~G~~~~~------~---~~~-~~~gs~~~~l~~~--~~--~pVlvv 139 (140)
T PF00582_consen 101 HNADLIVMGSRGRS------G---LER-LLFGSVAEKLLRH--AP--CPVLVV 139 (140)
T ss_dssp TTCSEEEEESSSTT------S---TTT-SSSHHHHHHHHHH--TS--SEEEEE
T ss_pred ccceeEEEeccCCC------C---ccC-CCcCCHHHHHHHc--CC--CCEEEe
Confidence 57999999999832 1 111 1266666666643 23 488876
No 125
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=39.59 E-value=72 Score=27.65 Aligned_cols=40 Identities=18% Similarity=0.170 Sum_probs=25.1
Q ss_pred CCCcEEEEcccCCCCCccccCCCCCCCCCcccccccccccCCCCCCCccEEEeC
Q 043315 534 NDYDLVVVGKRRRPNSSRERDMTPWTDYEELRVIGDMLASQDFCGGMNPVLVVQ 587 (587)
Q Consensus 534 ~~~dLviVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~Las~d~~~~~~svLVvq 587 (587)
.+.||+++|+++... | ...-+|-.-+-+.. .++++||||+
T Consensus 93 ~~~dlIV~G~~~~~~---------~-~~~~lGs~~~~v~~----~~~~pvlvv~ 132 (132)
T cd01988 93 RQADLIIMGWHGSTS---------L-RDRLFGGVIDQVLE----SAPCDVAVVK 132 (132)
T ss_pred cCCCEEEEecCCCCC---------c-cceecCchHHHHHh----cCCCCEEEeC
Confidence 459999999997531 1 22345555555542 4456899885
No 126
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=39.09 E-value=4.1e+02 Score=26.61 Aligned_cols=111 Identities=14% Similarity=0.135 Sum_probs=74.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhh
Q 043315 165 GIAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQNGSRLISFEIIIGASYLGKFVGSLLIWVFIKASIPNAVIFSCILSL 244 (587)
Q Consensus 165 ~~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~~~~~~~~~~l~~~a~~~K~l~~~l~~~~~~~~~~~a~~lglll~~ 244 (587)
++.+..-+++-+-.+-+|+|= +.+.+.. .|.. +..-+.++.+.-+..+++.++++|.+. .+. ..|.+
T Consensus 58 ~~~l~~lLgPAtVALAvPLY~-------~~~~lk~-~~~~-Il~~~~~G~~~~~~s~~~la~~lg~~~--~i~--~Sl~p 124 (226)
T TIGR00659 58 GGVINDLLGPAVVALAIPLYK-------QLPQIKK-YWKE-IILNVAVGSVIAIISGTLLALLLGLGP--EII--ASLLP 124 (226)
T ss_pred hHHHHHhhHHHHHHHHHHHHH-------hHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHCcCH--HHH--HHhhh
Confidence 344555566666677777762 3333432 3433 444455556667778888899999873 333 35789
Q ss_pred hhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043315 245 KGIMDLIFILRWRIRKLIDKDTFTLAMLTHTAVTAVRTPLISLY 288 (587)
Q Consensus 245 kG~~~li~~~i~~~~gli~~~~f~~lvl~~lvtt~i~~plv~~l 288 (587)
|....=+...+..+.|-+.+=+-...++.-++-+.+.|++++++
T Consensus 125 kSvTtpiAm~vs~~iGG~~sLta~~vvitGi~Ga~~g~~ll~~~ 168 (226)
T TIGR00659 125 KSVTTPIAMHVSEMIGGIPAVTAVFVILTGLLGTVFGPMVLRYF 168 (226)
T ss_pred HHhhHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99998888888888887666666666677777777888888875
No 127
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=38.68 E-value=3.7e+02 Score=26.72 Aligned_cols=138 Identities=13% Similarity=0.122 Sum_probs=67.3
Q ss_pred hhHHHHHHHhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHH---------HHhcccccc------cccc-----------
Q 043315 145 TTYLLGALLMGLIIPPGPPLGIAIIERFELVIFHFFLPFFY---------IRIGQYTNL------SSIQ----------- 198 (587)
Q Consensus 145 ~~~ilGAFlaGL~lp~~~p~~~~l~ekl~~~~~~~flPlFF---------~~~Gl~~dl------~~l~----------- 198 (587)
++..+||=...+++|=. ...+.+.+...++..+.+.-.++ -..|+.=++ ++..
T Consensus 51 l~~lLgPatVALAvPLY-~~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~pkSVTtpiAi~is~~i 129 (215)
T PF04172_consen 51 LSFLLGPATVALAVPLY-RQRRLLKKNWIPILVGVLVGSLVSIFSAVLLARLLGLSPEIILSLAPKSVTTPIAIEISEQI 129 (215)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 35678888888888865 44566666665554433332222 122222111 0000
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Q 043315 199 NGSRLISFEIIIGASYLGKFVGSLLIWVFIKASIPNAVIFSCILSLKGIMDLIFILRWRIRKLIDKDTFTLAMLTHTAVT 278 (587)
Q Consensus 199 ~~~~~~~~~~l~~~a~~~K~l~~~l~~~~~~~~~~~a~~lglll~~kG~~~li~~~i~~~~gli~~~~f~~lvl~~lvtt 278 (587)
.+.....+..+++.+++|-.++-.+ .+++|++...+.-+++..+..|.=.--....+.+.|.+. --.|+++.++|+
T Consensus 130 GG~~sLta~~VvitGi~Ga~~g~~l-lk~~~I~~~~A~GlalG~~sHaiGTa~a~e~~~~~ga~s---slam~l~gi~t~ 205 (215)
T PF04172_consen 130 GGIPSLTAVFVVITGILGAVLGPPL-LKLLRIKDPVARGLALGTASHAIGTARALEIGEEAGAFS---SLAMILSGILTA 205 (215)
T ss_pred CChHHHHHHHHHHHhhHHHHhHHHH-HhHcccccHHHHHHHhccchHHHHHHHHHHcCchHHHHH---HHHHHHHHHHHH
Confidence 0001111333444445555554333 445566554444444444555544444444443333322 235677888887
Q ss_pred HHHHHHHHH
Q 043315 279 AVRTPLISL 287 (587)
Q Consensus 279 ~i~~plv~~ 287 (587)
++.|.+...
T Consensus 206 ~~~P~~~~l 214 (215)
T PF04172_consen 206 LLAPLLAPL 214 (215)
T ss_pred HHHHHHHHh
Confidence 777776654
No 128
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=38.40 E-value=75 Score=27.63 Aligned_cols=21 Identities=10% Similarity=0.243 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcC
Q 043315 20 CFLLSFNFTISLTLVLRENIP 40 (587)
Q Consensus 20 ~~~ip~~~g~~~~~~l~~~~~ 40 (587)
++++|.++|..++.++...++
T Consensus 51 ~~v~pil~G~~lG~WLD~~~~ 71 (100)
T TIGR02230 51 SVAIPTLLGVAVGIWLDRHYP 71 (100)
T ss_pred HHHHHHHHHHHHHHHHHhhcC
Confidence 567899999999999987765
No 129
>COG0679 Predicted permeases [General function prediction only]
Probab=38.25 E-value=4.8e+02 Score=27.14 Aligned_cols=135 Identities=19% Similarity=0.180 Sum_probs=76.0
Q ss_pred hHHHHHHHhhhhcCC-CCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 043315 146 TYLLGALLMGLIIPP-GPPLGIAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQNGSRLISFEIIIGASYLGKFVGSLLI 224 (587)
Q Consensus 146 ~~ilGAFlaGL~lp~-~~p~~~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~~~~~~~~~~l~~~a~~~K~l~~~l~ 224 (587)
+|.+=|+++|+++.- +-++.+.+.+-++.+ .+--.|+=.+..|+.++........... .......-.+...+..++.
T Consensus 168 nP~i~a~i~g~~~~~~~i~lP~~~~~~~~~l-~~a~~pl~li~lG~~L~~~~~~~~~~~~-~~~~~~~kll~~Pl~~~~~ 245 (311)
T COG0679 168 NPLIIALILGLLLNLLGISLPAPLDTAVDLL-ASAASPLALIALGLSLAFLKLKGSKPPI-ILIALSLKLLLAPLVALLV 245 (311)
T ss_pred CcHHHHHHHHHHHHHcCCCCcHHHHHHHHHH-HHhhhhHHHHHHhhhcchhhhccccchh-HHHHHHHHHHHHHHHHHHH
Confidence 444445566655553 123334666666666 6778999999999999985444332322 2222222355666677778
Q ss_pred HHHhCCChHHHHHHHHHh--hhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 043315 225 WVFIKASIPNAVIFSCIL--SLKGIMDLIFILRWRIRKLIDKDTFTLAMLTHTAVTAVRTPLISL 287 (587)
Q Consensus 225 ~~~~~~~~~~a~~lglll--~~kG~~~li~~~i~~~~gli~~~~f~~lvl~~lvtt~i~~plv~~ 287 (587)
.+.+|++.-+. ...+++ .+.+....+. +.+.+ .|++.....+....+.+.++-|.+..
T Consensus 246 ~~~~~l~~~~~-~v~vl~~a~P~A~~~~v~---a~~~~-~~~~laa~~i~ist~ls~~t~p~~~~ 305 (311)
T COG0679 246 AKLLGLSGLAL-QVLVLLSAMPTAVNAYVL---ARQYG-GDPRLAASTILLSTLLSLLTLPLLIL 305 (311)
T ss_pred HHHcCCChHHH-HHHHHHhhCcHHhHHHHH---HHHhC-CChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889876655 333443 3444433333 33444 35555555554554545555555444
No 130
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=37.48 E-value=3.2e+02 Score=28.20 Aligned_cols=136 Identities=15% Similarity=0.117 Sum_probs=82.6
Q ss_pred cCCceEEEEEEEEecCCChHHHHHHHHhhcCCCEEEeccCCCccccccc----hhHHHhhccCCCcEEEEEeCCCC-CC-
Q 043315 410 KSSQVTIQPFILIAPYKTMYESISKLAQDEFIPFIILPSHQSHKMQQGG----GFNCKIQNCAPCSVGIYVDRGIN-DL- 483 (587)
Q Consensus 410 ~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~~~~~dg~----~~n~~vl~~apcsVgIlvdRg~~-dd- 483 (587)
..+.-.|-.+...+ -.+.+.+.+.|++.+++.||-=....... .|. ...+...++++.+|++=.|+|.. |+
T Consensus 9 ~~~~yaV~AfN~~n--~e~~~avi~AAe~~~sPvIi~~~~~~~~~-~~~~~~~~~~~~~a~~~~VPV~lHLDH~~~~~~i 85 (276)
T cd00947 9 REGGYAVGAFNINN--LETLKAILEAAEETRSPVILQISEGAIKY-AGLELLVAMVKAAAERASVPVALHLDHGSSFELI 85 (276)
T ss_pred HHCCceEEEEeeCC--HHHHHHHHHHHHHhCCCEEEEcCcchhhh-CCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHH
Confidence 44555666777777 57899999999999999998554333222 222 66778888999999999999975 22
Q ss_pred ---------------ccccCchhhcchHHHHHHHHhhccC----CCceEEE-------EEEecChHHHHHHHHhhcCCCc
Q 043315 484 ---------------IEAEDVSERILDDNVINDFKSRNLG----NACVLCH-------HVDVTNTLEAWEVIRSSDNDYD 537 (587)
Q Consensus 484 ---------------~~~~~~~~~~~d~~~~~~~~~~~~~----~~~v~y~-------e~~v~~~~~~~~~i~~~~~~~d 537 (587)
+....+..-+...++.+--+..... -+.|.-. +...+|.+|..+.+++..-|.-
T Consensus 86 ~~ai~~GftSVMiD~S~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~~~~~T~pe~a~~Fv~~TgvD~L 165 (276)
T cd00947 86 KRAIRAGFSSVMIDGSHLPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFVEETGVDAL 165 (276)
T ss_pred HHHHHhCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCcccccccCCCHHHHHHHHHHHCCCEE
Confidence 1111111222333344333332210 0011111 2335678888888888766665
Q ss_pred EEEEcccCCCC
Q 043315 538 LVVVGKRRRPN 548 (587)
Q Consensus 538 LviVGr~~~~~ 548 (587)
-+=+|.-||..
T Consensus 166 AvsiGt~HG~Y 176 (276)
T cd00947 166 AVAIGTSHGAY 176 (276)
T ss_pred EeccCcccccc
Confidence 66678888864
No 131
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=36.74 E-value=5.5e+02 Score=27.36 Aligned_cols=48 Identities=15% Similarity=0.071 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhhhhhHHHHHHH
Q 043315 206 FEIIIGASYLGKFVGSLLIWVFIKASIPNAVIFSCILSLKGIMDLIFIL 254 (587)
Q Consensus 206 ~~~l~~~a~~~K~l~~~l~~~~~~~~~~~a~~lglll~~kG~~~li~~~ 254 (587)
+++-+++=+..-+..+++.++..|+|.+++..+++....+ .+|++++.
T Consensus 249 iAIpl~iy~~~~~~i~~~i~k~lgl~y~~~~~~~ft~aSN-nfeLAiAv 296 (342)
T COG0798 249 IAIPLLIYFLLMFFISYFIAKALGLPYEDAAALVFTGASN-NFELAIAV 296 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChhhhhceeeeeccc-cHHHHHHH
Confidence 4455555567788888999999999999998887765443 35555443
No 132
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=36.73 E-value=40 Score=27.48 Aligned_cols=46 Identities=20% Similarity=0.176 Sum_probs=35.5
Q ss_pred ChHHHHHHHHhhcCCCEEEeccCCCccccc--cc-hhHHHhhccCCCcE
Q 043315 427 TMYESISKLAQDEFIPFIILPSHQSHKMQQ--GG-GFNCKIQNCAPCSV 472 (587)
Q Consensus 427 ~m~~dI~~~A~e~~~~lIilp~h~~~~~~d--g~-~~n~~vl~~apcsV 472 (587)
.+++-+.+.|++.+++.|+.+.|....... +. ....++.+.++|.|
T Consensus 35 ~~~~~~~~~a~~~~~~~Iv~G~~~~d~~~~~~~~~~~~~~~~~~~~~~v 83 (86)
T cd01984 35 AFVRILKRLAAEEGADVIILGHNADDVAGRRLGASANVLVVIKGAGIPV 83 (86)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCchhhhhhccCchhhhhhcccccCCce
Confidence 889999999999999999999987765411 21 24467788888884
No 133
>COG0395 UgpE ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]
Probab=36.54 E-value=2.8e+02 Score=28.66 Aligned_cols=76 Identities=20% Similarity=0.183 Sum_probs=51.0
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHH------HHhhHHHHHHHhhccccCCchHHH
Q 043315 6 ILQVAKNALSVGMPCFLLSFNFTISLTLVLRENIPGMVGGSFPFLLSMVL------SLNYFPVVHALSELNLLTSDLSQL 79 (587)
Q Consensus 6 l~~~~~~a~~ig~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~l~lg~~l------s~Ts~pVv~iL~el~ll~s~~Grl 79 (587)
+.+.-.+++.+++.+.++..+++...+|.+.+.-- .....++..+.. .++..|.-.++.++|++||..|-+
T Consensus 71 f~~~~~NSliva~~~t~l~i~~~~laaYalar~~f---~g~~~~~~~~l~~lm~P~~v~~iPl~~~~~~lgl~nt~~gli 147 (281)
T COG0395 71 FLRYFLNSLIVAVGSTVLSLLLSSLAAYALARFRF---KGRKLLFLLLLLTLMLPAQVLLIPLYLLMRKLGLLNTYWGLI 147 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CcHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCChhhHHHHH
Confidence 55677889999999999999999999999876311 112222222111 223455447788999999988876
Q ss_pred HHHHH
Q 043315 80 AISCA 84 (587)
Q Consensus 80 als~a 84 (587)
....+
T Consensus 148 l~~~~ 152 (281)
T COG0395 148 LPYLA 152 (281)
T ss_pred HHHHH
Confidence 55443
No 134
>PRK09903 putative transporter YfdV; Provisional
Probab=35.96 E-value=5.2e+02 Score=26.82 Aligned_cols=133 Identities=11% Similarity=-0.037 Sum_probs=74.6
Q ss_pred hHHHHHHHhhhhcCCC-CCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHH----H
Q 043315 146 TYLLGALLMGLIIPPG-PPLGIAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQNGSRLISFEIIIGASYLGKFV----G 220 (587)
Q Consensus 146 ~~ilGAFlaGL~lp~~-~p~~~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~~~~~~~~~~l~~~a~~~K~l----~ 220 (587)
+|.+=|.++|+++.-. -++-+.+.+-++.+ .+-..|+-...+|+++....+... +. .. ...+.|++ .
T Consensus 173 nP~iia~~~gl~~~l~~i~lP~~i~~~l~~l-g~~~~PlaL~~iG~~L~~~~~~~~-~~--~~----~~~~~Kli~~P~i 244 (314)
T PRK09903 173 EPVVWAPVLATILVLVGVKIPAAWDPTFNLI-AKANSGVAVFAAGLTLAAHKFEFS-AE--IA----YNTFLKLILMPLA 244 (314)
T ss_pred chHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcccccc-HH--HH----HHHHHHHHHHHHH
Confidence 3566677777755532 24556777777776 677899999999999866544211 11 11 11122333 3
Q ss_pred HHHHHHHhCCChHHHHHHHHHhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043315 221 SLLIWVFIKASIPNAVIFSCILSLKGIMDLIFILRWRIRKLIDKDTFTLAMLTHTAVTAVRTPLISLYY 289 (587)
Q Consensus 221 ~~l~~~~~~~~~~~a~~lglll~~kG~~~li~~~i~~~~gli~~~~f~~lvl~~lvtt~i~~plv~~ly 289 (587)
.++...+++++... ....+++++- -.....+..+.+.|. |++.-+..+....+.++++-|++-++.
T Consensus 245 ~~~~~~~~~l~~~~-~~v~vl~aa~-P~a~~~~i~A~~y~~-~~~~aa~~v~~sTlls~iTlpl~~~l~ 310 (314)
T PRK09903 245 LLLVGMACHLNSEH-LQMMVLAGAL-PPAFSGIIIASRFNV-YTRTGTASLAVSVLGFVVTAPLWIYVS 310 (314)
T ss_pred HHHHHHHcCCCcHH-HHHHHHHHcc-cHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556776433 3334443321 222223334455553 677777777666666777777776654
No 135
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=34.77 E-value=89 Score=35.45 Aligned_cols=71 Identities=15% Similarity=0.153 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhcccccccccccc--hhHHHHHHHH-------HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhhhhh
Q 043315 177 FHFFLPFFYIRIGQYTNLSSIQNG--SRLISFEIII-------GASYLGKFVGSLLIWVFIKASIPNAVIFSCILSLKGI 247 (587)
Q Consensus 177 ~~~flPlFF~~~Gl~~dl~~l~~~--~~~~~~~~l~-------~~a~~~K~l~~~l~~~~~~~~~~~a~~lglll~~kG~ 247 (587)
..+++|---.-.|.+++-+.+... .+. .+.+. ++....|+.+. ....++++++|++++|.+.++.--
T Consensus 102 f~vLLPpiif~sgy~l~k~~fF~n~~si~--~fa~~Gt~IS~~~ig~gv~~~~~--~~~~~~~~f~d~L~fGaliSATDP 177 (575)
T KOG1965|consen 102 FLVLLPPIIFNSGYSLKKKQFFRNIGSIL--LFAIFGTFISAVIIGAGVYLLGF--GLLIYDLSFKDCLAFGALISATDP 177 (575)
T ss_pred HHHhhchhhhcccceechhhhhhhhHHHH--HhhhcceeeehhHHhhHHHHHhc--ccccccccHHHHHHHhhHhcccCc
Confidence 567778777788999987766422 211 11111 22223344333 234568999999999999988766
Q ss_pred HHHH
Q 043315 248 MDLI 251 (587)
Q Consensus 248 ~~li 251 (587)
+..+
T Consensus 178 VtvL 181 (575)
T KOG1965|consen 178 VTVL 181 (575)
T ss_pred hHHH
Confidence 5543
No 136
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=34.77 E-value=4.7e+02 Score=25.98 Aligned_cols=111 Identities=14% Similarity=0.067 Sum_probs=75.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhh
Q 043315 165 GIAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQNGSRLISFEIIIGASYLGKFVGSLLIWVFIKASIPNAVIFSCILSL 244 (587)
Q Consensus 165 ~~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~~~~~~~~~~l~~~a~~~K~l~~~l~~~~~~~~~~~a~~lglll~~ 244 (587)
++.+..-+.+-+-.+-+|+|= +.+.+.. .|.. ++.-+.++.+.-++.+++.++++|.+..-. ..+.+
T Consensus 48 g~~l~~lLgPatVALAvPLY~-------~~~~l~~-~~~~-il~~~~~g~~~~~~~~~~l~~~lgl~~~~~----~Sl~p 114 (215)
T PF04172_consen 48 GDILSFLLGPATVALAVPLYR-------QRRLLKK-NWIP-ILVGVLVGSLVSIFSAVLLARLLGLSPEII----LSLAP 114 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHCcCHHHH----HHHHH
Confidence 445555556655566667663 2333332 3443 445555566677788888899999865433 44678
Q ss_pred hhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043315 245 KGIMDLIFILRWRIRKLIDKDTFTLAMLTHTAVTAVRTPLISLY 288 (587)
Q Consensus 245 kG~~~li~~~i~~~~gli~~~~f~~lvl~~lvtt~i~~plv~~l 288 (587)
|....=+...+..+.|-..+=+-...++.-++-..+.|++++++
T Consensus 115 kSVTtpiAi~is~~iGG~~sLta~~VvitGi~Ga~~g~~llk~~ 158 (215)
T PF04172_consen 115 KSVTTPIAIEISEQIGGIPSLTAVFVVITGILGAVLGPPLLKLL 158 (215)
T ss_pred HHhhHHHHHHHHHHhCChHHHHHHHHHHHhhHHHHhHHHHHhHc
Confidence 99988888888888887776666667777777778888888873
No 137
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=33.93 E-value=61 Score=29.43 Aligned_cols=37 Identities=22% Similarity=0.164 Sum_probs=28.9
Q ss_pred EEEEEEEecCCChHHHHHHHHhhcCCCEEEeccCCCc
Q 043315 416 IQPFILIAPYKTMYESISKLAQDEFIPFIILPSHQSH 452 (587)
Q Consensus 416 v~~~~~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~~ 452 (587)
..-..++-|...||..|.++|++-+|+++|-|+....
T Consensus 71 a~lIYSiRPP~El~~~il~lA~~v~adlii~pL~~e~ 107 (127)
T PF03686_consen 71 ADLIYSIRPPPELQPPILELAKKVGADLIIRPLGGES 107 (127)
T ss_dssp EEEEEEES--TTSHHHHHHHHHHHT-EEEEE-BTTB-
T ss_pred CcEEEEeCCChHHhHHHHHHHHHhCCCEEEECCCCCC
Confidence 4578899999999999999999999999999997654
No 138
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=33.77 E-value=59 Score=35.67 Aligned_cols=50 Identities=18% Similarity=0.252 Sum_probs=32.2
Q ss_pred HHHHHHHhhccCCCceEEEEEEe---cChHHHHHHHHhhc--CCCcEEEEcccCCC
Q 043315 497 NVINDFKSRNLGNACVLCHHVDV---TNTLEAWEVIRSSD--NDYDLVVVGKRRRP 547 (587)
Q Consensus 497 ~~~~~~~~~~~~~~~v~y~e~~v---~~~~~~~~~i~~~~--~~~dLviVGr~~~~ 547 (587)
+.+...+.+... -+|.+-...| +-+.|++++|+..+ ++.|++||||+.|.
T Consensus 151 DIl~~~~rR~P~-~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGGS 205 (440)
T COG1570 151 DILHTLSRRFPS-VEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGGS 205 (440)
T ss_pred HHHHHHHhhCCC-CeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcch
Confidence 455555555443 3344444333 23467888888877 34899999999985
No 139
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=31.63 E-value=4.2e+02 Score=24.51 Aligned_cols=69 Identities=9% Similarity=0.078 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhChh---HHHHHHHhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHH--Hhcccccccccccchh
Q 043315 132 GALVMGFLSDAIGTT---YLLGALLMGLIIPPGPPLGIAIIERFELVIFHFFLPFFYI--RIGQYTNLSSIQNGSR 202 (587)
Q Consensus 132 ~~~~~a~lae~~G~~---~ilGAFlaGL~lp~~~p~~~~l~ekl~~~~~~~flPlFF~--~~Gl~~dl~~l~~~~~ 202 (587)
..++.-+++..+++. +++|-+++=+++--..-..+++.+--+.+.. -+|+||+ .+|.-..++.+....|
T Consensus 19 ~~~lGe~i~~ll~lPiPGsViGMlLL~l~L~~~~vk~~~v~~~a~~LL~--~m~LfFVPagVGim~~~~ll~~~~~ 92 (141)
T PRK04125 19 IMLISNIIASFLPIPMPASVIGLVLLFVLLCTKVVKLEQVESLGTALTN--NIGFLFVPSGISVINSLGVMSQYPV 92 (141)
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHH--HHHHHHhhhHhHHHHhHHHHHHHHH
Confidence 333334555566653 4566544433333221223344444444432 3688885 5666555555544333
No 140
>PRK08185 hypothetical protein; Provisional
Probab=30.99 E-value=3.6e+02 Score=27.96 Aligned_cols=137 Identities=15% Similarity=0.132 Sum_probs=82.5
Q ss_pred hcCCceEEEEEEEEecCCChHHHHHHHHhhcCCCEEEeccCCCccccccc---hhHHHhhccCCCcEEEEEeCCCC----
Q 043315 409 SKSSQVTIQPFILIAPYKTMYESISKLAQDEFIPFIILPSHQSHKMQQGG---GFNCKIQNCAPCSVGIYVDRGIN---- 481 (587)
Q Consensus 409 ~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~~~~~dg~---~~n~~vl~~apcsVgIlvdRg~~---- 481 (587)
+..+.-.|-.|...+ ..+...|.+.|+|.+++.||--....... .|. .+.+...++++.+|++=-|+|..
T Consensus 8 A~~~~yaV~AfN~~n--~e~~~avi~AAee~~sPvIl~~~~~~~~~-~~~~~~~~~~~~a~~~~vPV~lHLDHg~~~e~i 84 (283)
T PRK08185 8 AKEHQFAVGAFNVAD--SCFLRAVVEEAEANNAPAIIAIHPNELDF-LGDNFFAYVRERAKRSPVPFVIHLDHGATIEDV 84 (283)
T ss_pred HHHcCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEeCcchhhh-ccHHHHHHHHHHHHHCCCCEEEECCCCCCHHHH
Confidence 345556666777777 67889999999999999999665443332 222 66678888999999999999875
Q ss_pred -------------CCccccCchhhcchHHHHHHHHhhccC----CCceEE---------EEEEecChHHHHHHHHhhcCC
Q 043315 482 -------------DLIEAEDVSERILDDNVINDFKSRNLG----NACVLC---------HHVDVTNTLEAWEVIRSSDND 535 (587)
Q Consensus 482 -------------dd~~~~~~~~~~~d~~~~~~~~~~~~~----~~~v~y---------~e~~v~~~~~~~~~i~~~~~~ 535 (587)
|.+..+.+.-.++..+..+-.+..... -+.+.. .+...+|.+|..+..+...-|
T Consensus 85 ~~ai~~Gf~SVM~D~S~l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~e~~~~~~~~~~~~t~peea~~f~~~TgvD 164 (283)
T PRK08185 85 MRAIRCGFTSVMIDGSLLPYEENVALTKEVVELAHKVGVSVEGELGTIGNTGTSIEGGVSEIIYTDPEQAEDFVSRTGVD 164 (283)
T ss_pred HHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCcccccccccccccCCCHHHHHHHHHhhCCC
Confidence 111111111122233333222221110 001111 122356788888888887666
Q ss_pred CcEEEEcccCCCC
Q 043315 536 YDLVVVGKRRRPN 548 (587)
Q Consensus 536 ~dLviVGr~~~~~ 548 (587)
|=-+=+|--||..
T Consensus 165 ~LAvaiGt~HG~y 177 (283)
T PRK08185 165 TLAVAIGTAHGIY 177 (283)
T ss_pred EEEeccCcccCCc
Confidence 7666688888864
No 141
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=30.49 E-value=87 Score=27.66 Aligned_cols=12 Identities=58% Similarity=0.900 Sum_probs=10.1
Q ss_pred CCCcEEEEcccC
Q 043315 534 NDYDLVVVGKRR 545 (587)
Q Consensus 534 ~~~dLviVGr~~ 545 (587)
++.||+++|.++
T Consensus 112 ~~adliV~G~~g 123 (154)
T COG0589 112 EDADLIVVGSRG 123 (154)
T ss_pred hCCCEEEECCCC
Confidence 369999999973
No 142
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=29.88 E-value=7.5e+02 Score=26.82 Aligned_cols=94 Identities=10% Similarity=0.115 Sum_probs=47.1
Q ss_pred HHHH-HHHHHHHHHHHhChhHHHHHHHhhhhcCCCCCchhHHHHHHHHHHHHHHHHHH-HHHhcccccccccccc-hhHH
Q 043315 128 VLAI-GALVMGFLSDAIGTTYLLGALLMGLIIPPGPPLGIAIIERFELVIFHFFLPFF-YIRIGQYTNLSSIQNG-SRLI 204 (587)
Q Consensus 128 i~~i-~~~~~a~lae~~G~~~ilGAFlaGL~lp~~~p~~~~l~ekl~~~~~~~flPlF-F~~~Gl~~dl~~l~~~-~~~~ 204 (587)
++-+ .+.+++++. =.-.+.+|.|++|-.+.+. ..-+++.+..+.-...+ .-+| -.++|...+-..+.+. ++.
T Consensus 267 lFPivv~i~~~ll~--P~a~PLiGmlmfGNllrEs-GVv~rLs~taqn~L~ni-vTIfLGl~VGa~~~A~~FL~~~tl~- 341 (433)
T PRK15475 267 LFPVVLLLLVALLL--PDAAPLLGMFCFGNLMRES-GVVERLSDTVQNGLINI-VTIFLGLSVGAKLVADKFLQPQTLG- 341 (433)
T ss_pred HHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHH-HHHHHHHHhhhhccHHhhCChHHHH-
Confidence 3434 444444442 2346789999999999987 33344443333222222 1222 2567777776555433 332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043315 205 SFEIIIGASYLGKFVGSLLIWVF 227 (587)
Q Consensus 205 ~~~~l~~~a~~~K~l~~~l~~~~ 227 (587)
++.+=++++..-..++.+.+++
T Consensus 342 -Il~LGlvAF~~~TagGVL~aKl 363 (433)
T PRK15475 342 -ILLLGVIAFGIGTAAGVLMAKL 363 (433)
T ss_pred -HHHHHHHHHHHhhhHHHHHHHH
Confidence 3333334444444444444443
No 143
>PRK09903 putative transporter YfdV; Provisional
Probab=29.77 E-value=6.5e+02 Score=26.08 Aligned_cols=105 Identities=13% Similarity=0.138 Sum_probs=61.2
Q ss_pred HHHHHHhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH-
Q 043315 148 LLGALLMGLIIPPGPPLGIAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQNGSRLISFEIIIGASYLGKFVGSLLIWV- 226 (587)
Q Consensus 148 ilGAFlaGL~lp~~~p~~~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~~~~~~~~~~l~~~a~~~K~l~~~l~~~- 226 (587)
++.=...|-.+.+...+.++-.+.++.++..+.+|......-.+.+.+.+.. .+.. .....++++.-++.+++.++
T Consensus 12 if~ii~lG~~~~r~~~~~~~~~~~ls~lv~~v~lPalif~s~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~ 88 (314)
T PRK09903 12 IIVIMLLGYFSGRRETFSEDQARAFNKLVLNYALPAALFVSITRANREMIFA-DTRL--TLVSLVVIVGCFFFSWFGCYK 88 (314)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHh-hhhH--HHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666667667778888899999999999999988888877544321 1221 22223333334444555443
Q ss_pred HhCCChHHH--HHHHHHhhhhhhHHHHHHHH
Q 043315 227 FIKASIPNA--VIFSCILSLKGIMDLIFILR 255 (587)
Q Consensus 227 ~~~~~~~~a--~~lglll~~kG~~~li~~~i 255 (587)
+.+.+.++. ..+......-|-+.+-+...
T Consensus 89 ~~~~~~~~~~~~~~~~~~~N~gf~G~Pl~~~ 119 (314)
T PRK09903 89 FFKRTHAEAAVCALIAGSPTIGFLGFAVLDP 119 (314)
T ss_pred HhcCCcchhhHhhhhhcCCCcccccHHHHHH
Confidence 556665554 33333344445555544443
No 144
>PRK04148 hypothetical protein; Provisional
Probab=29.32 E-value=70 Score=29.34 Aligned_cols=36 Identities=25% Similarity=0.306 Sum_probs=32.2
Q ss_pred EEEEEecCCChHHHHHHHHhhcCCCEEEeccCCCcc
Q 043315 418 PFILIAPYKTMYESISKLAQDEFIPFIILPSHQSHK 453 (587)
Q Consensus 418 ~~~~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~~~ 453 (587)
-..++-|...|+..|.++|++-+++++|-|+.....
T Consensus 80 liysirpp~el~~~~~~la~~~~~~~~i~~l~~e~~ 115 (134)
T PRK04148 80 LIYSIRPPRDLQPFILELAKKINVPLIIKPLSGEEP 115 (134)
T ss_pred EEEEeCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCC
Confidence 577888999999999999999999999999976653
No 145
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=29.23 E-value=3.6e+02 Score=27.93 Aligned_cols=137 Identities=12% Similarity=0.081 Sum_probs=81.3
Q ss_pred hcCCceEEEEEEEEecCCChHHHHHHHHhhcCCCEEEeccCCCccccccc----hhHHHhhccCCCcEEEEEeCCCC-CC
Q 043315 409 SKSSQVTIQPFILIAPYKTMYESISKLAQDEFIPFIILPSHQSHKMQQGG----GFNCKIQNCAPCSVGIYVDRGIN-DL 483 (587)
Q Consensus 409 ~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~~~~~dg~----~~n~~vl~~apcsVgIlvdRg~~-dd 483 (587)
++.+.-.|-.|.... -.+.+.+.+.|++.+++.||--....... -|. ...+...++++++|++=-|+|.. |+
T Consensus 13 A~~~~yaV~AfN~~n--~e~~~avi~AAee~~sPvIiq~~~~~~~~-~g~~~~~~~~~~~a~~~~VPValHLDH~~~~e~ 89 (284)
T PRK12737 13 AQAEGYAVPAFNIHN--LETLQVVVETAAELRSPVILAGTPGTFSY-AGTDYIVAIAEVAARKYNIPLALHLDHHEDLDD 89 (284)
T ss_pred HHHcCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcCccHHhh-CCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHH
Confidence 345566677787777 57889999999999999999644333222 222 56678889999999999999875 11
Q ss_pred ----------------ccccCchhhcchHHHHHHHHhhcc----------CC-CceEE--EEEEecChHHHHHHHHhhcC
Q 043315 484 ----------------IEAEDVSERILDDNVINDFKSRNL----------GN-ACVLC--HHVDVTNTLEAWEVIRSSDN 534 (587)
Q Consensus 484 ----------------~~~~~~~~~~~d~~~~~~~~~~~~----------~~-~~v~y--~e~~v~~~~~~~~~i~~~~~ 534 (587)
+..+-+..-+...+..+--+.... +. +.+.. .+...+|.+|..+.+++..-
T Consensus 90 i~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~~Tgv 169 (284)
T PRK12737 90 IKKKVRAGIRSVMIDGSHLSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVERTGI 169 (284)
T ss_pred HHHHHHcCCCeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHHHhCC
Confidence 111111111222233322222211 00 11111 11224677888888888766
Q ss_pred CCcEEEEcccCCCC
Q 043315 535 DYDLVVVGKRRRPN 548 (587)
Q Consensus 535 ~~dLviVGr~~~~~ 548 (587)
|.--+=+|.-||..
T Consensus 170 D~LAvaiGt~HG~y 183 (284)
T PRK12737 170 DSLAVAIGTAHGLY 183 (284)
T ss_pred CEEeeccCcccccc
Confidence 66566677788764
No 146
>TIGR00828 EIID-AGA PTS system, mannose/fructose/sorbose family, IID component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man family is unique in several respects among PTS permease families.It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IID subunits of this family of PTS transporters.
Probab=28.70 E-value=2.6e+02 Score=28.86 Aligned_cols=55 Identities=13% Similarity=0.121 Sum_probs=35.0
Q ss_pred HHHHhChhHHHHHHHhhhhcC------CCCCchhHHHHHHH------------HHHHHHHHHHHHH-Hhccccc
Q 043315 139 LSDAIGTTYLLGALLMGLIIP------PGPPLGIAIIERFE------------LVIFHFFLPFFYI-RIGQYTN 193 (587)
Q Consensus 139 lae~~G~~~ilGAFlaGL~lp------~~~p~~~~l~ekl~------------~~~~~~flPlFF~-~~Gl~~d 193 (587)
-.++++.|+.+|+|+.|+.++ ++++...+..+.+. ++..+.+.|++.. .+++-.+
T Consensus 58 hl~fFNT~p~~~~~I~Gi~~amEE~~A~g~~~~~e~I~~iKt~LMGPlAGIGDSlf~gt~~pI~~~Ia~~lA~~ 131 (271)
T TIGR00828 58 HLEFFNTHPNLVGPIMGVTAAMEEKRANGAGIDDGAINGIKVGLMGPIAGVGDPIFWGTLRPIMAALGASLALS 131 (271)
T ss_pred HHHHHCCCchhhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHccchhhhhhHHHHHHHHHHHHHHHHHHHhc
Confidence 346789999999999999997 33233344444442 4446677777773 3444333
No 147
>PRK15456 universal stress protein UspG; Provisional
Probab=28.70 E-value=1.4e+02 Score=26.60 Aligned_cols=75 Identities=19% Similarity=0.111 Sum_probs=37.9
Q ss_pred hHHHHHHHHhhccCCCceEEEEEEecChHHHHHHHHhhc--CCCcEEEEcccCCCCCccccCCCCCCCCCcccccccccc
Q 043315 495 DDNVINDFKSRNLGNACVLCHHVDVTNTLEAWEVIRSSD--NDYDLVVVGKRRRPNSSRERDMTPWTDYEELRVIGDMLA 572 (587)
Q Consensus 495 d~~~~~~~~~~~~~~~~v~y~e~~v~~~~~~~~~i~~~~--~~~dLviVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~La 572 (587)
-++.++++.+.... ..+.+. ..+..|. ..+.|.+.+ .+.||+|+|.++. + +. + .=+|-..+-++
T Consensus 66 ~~~~l~~~~~~~~~-~~~~v~-~~v~~G~-~~~~I~~~a~~~~~DLIVmG~~g~--~-~~----~----~llGS~a~~v~ 131 (142)
T PRK15456 66 AEERLQTMVSHFTI-DPSRIK-QHVRFGS-VRDEVNELAEELGADVVVIGSRNP--S-IS----T----HLLGSNASSVI 131 (142)
T ss_pred HHHHHHHHHHHhCC-CCcceE-EEEcCCC-hHHHHHHHHhhcCCCEEEEcCCCC--C-cc----c----eecCccHHHHH
Confidence 34556666544321 222222 2233342 333343333 4699999999753 2 11 1 12566666555
Q ss_pred cCCCCCCCccEEEeC
Q 043315 573 SQDFCGGMNPVLVVQ 587 (587)
Q Consensus 573 s~d~~~~~~svLVvq 587 (587)
- .++++||||.
T Consensus 132 ~----~a~~pVLvV~ 142 (142)
T PRK15456 132 R----HANLPVLVVR 142 (142)
T ss_pred H----cCCCCEEEeC
Confidence 3 3456899873
No 148
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=28.69 E-value=8.2e+02 Score=26.94 Aligned_cols=28 Identities=11% Similarity=0.106 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccc
Q 043315 168 IIERFELVIFHFFLPFFYIRIGQYTNLS 195 (587)
Q Consensus 168 l~ekl~~~~~~~flPlFF~~~Gl~~dl~ 195 (587)
+...++..+++.++.+||..+|+.+.-+
T Consensus 58 ~~~~l~~wiNDgLMaiFFf~vGLEiKrE 85 (423)
T PRK14853 58 LSLSLGTWAADGLLAIFFFVVGLELKRE 85 (423)
T ss_pred CCCCHHHHHHHhhHHHHHHHHHHHHhHH
Confidence 3445666778899999999999999644
No 149
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=27.74 E-value=3.6e+02 Score=28.00 Aligned_cols=143 Identities=16% Similarity=0.208 Sum_probs=84.8
Q ss_pred hHHHHHHHhhhcCCceEEEEEEEEecCCChHHHHHHHHhhcCCCEEEeccCCCccccccc----hhHHHhhccCCCcEEE
Q 043315 399 DRIMRAMTKFSKSSQVTIQPFILIAPYKTMYESISKLAQDEFIPFIILPSHQSHKMQQGG----GFNCKIQNCAPCSVGI 474 (587)
Q Consensus 399 ~~i~~~f~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~~~~~dg~----~~n~~vl~~apcsVgI 474 (587)
++++.. ++.++-.|-.|...+ ..+...+++.|++.+++.||--....... .|. .+.....++++++|++
T Consensus 7 k~iL~~----A~~~~yaV~AfNv~n--~e~~~avi~AAee~~sPvIlq~~~~~~~~-~g~~~~~~~~~~~A~~~~VPVal 79 (284)
T PRK12857 7 AELLKK----AEKGGYAVGAFNCNN--MEIVQAIVAAAEAEKSPVIIQASQGAIKY-AGIEYISAMVRTAAEKASVPVAL 79 (284)
T ss_pred HHHHHH----HHHcCCeEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEechhHhhh-CCHHHHHHHHHHHHHHCCCCEEE
Confidence 445544 334555566777777 67889999999999999998654433332 232 5567788999999999
Q ss_pred EEeCCCC-CC----------------ccccCchhhcchHHHHHHHHhhcc----------CC-CceEEE--EEEecChHH
Q 043315 475 YVDRGIN-DL----------------IEAEDVSERILDDNVINDFKSRNL----------GN-ACVLCH--HVDVTNTLE 524 (587)
Q Consensus 475 lvdRg~~-dd----------------~~~~~~~~~~~d~~~~~~~~~~~~----------~~-~~v~y~--e~~v~~~~~ 524 (587)
=-|+|.. |+ +..+-++.-+...+..+--+.... +. +.+... +...+|.+|
T Consensus 80 HLDH~~~~e~i~~ai~~GftSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg~e~~~~~~~~~~~~T~pe~ 159 (284)
T PRK12857 80 HLDHGTDFEQVMKCIRNGFTSVMIDGSKLPLEENIALTKKVVEIAHAVGVSVEAELGKIGGTEDDITVDEREAAMTDPEE 159 (284)
T ss_pred ECCCCCCHHHHHHHHHcCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeecCCccCCCCcccchhhcCCHHH
Confidence 9999975 11 111111122233333333222221 00 111111 122467888
Q ss_pred HHHHHHhhcCCCcEEEEcccCCCC
Q 043315 525 AWEVIRSSDNDYDLVVVGKRRRPN 548 (587)
Q Consensus 525 ~~~~i~~~~~~~dLviVGr~~~~~ 548 (587)
..+.+++..-|.--+=+|.-||..
T Consensus 160 a~~Fv~~TgvD~LAvaiGt~HG~y 183 (284)
T PRK12857 160 ARRFVEETGVDALAIAIGTAHGPY 183 (284)
T ss_pred HHHHHHHHCCCEEeeccCcccccc
Confidence 888888876555556678888864
No 150
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=27.34 E-value=6.9e+02 Score=26.50 Aligned_cols=83 Identities=10% Similarity=0.074 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHH-HHHHHHHH
Q 043315 207 EIIIGASYLGKFVGSLLIWVFIKASIPNAVIFSCILSLKGIMDLIFILRWRIRKLIDKDTFTLAMLTHTAV-TAVRTPLI 285 (587)
Q Consensus 207 ~~l~~~a~~~K~l~~~l~~~~~~~~~~~a~~lglll~~kG~~~li~~~i~~~~gli~~~~f~~lvl~~lvt-t~i~~plv 285 (587)
+..++++++.-+.+..+..++.|++..|+.+++---..-..++++.+...++..-++.+-|....+..+=+ .++...++
T Consensus 58 ~~~~~lg~liPl~~~~iLr~~~~l~~~daaAiAAhYGSVSavTF~~a~~~L~~~gi~yeg~m~a~~alME~PAIival~L 137 (327)
T PF05982_consen 58 LAAVLLGILIPLIAFPILRRLGKLDRADAAAIAAHYGSVSAVTFAAALAFLESQGISYEGYMVALLALMESPAIIVALLL 137 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCChhhHHHHHHHcCchHHHHHHHHHHHHHHCCCCccccHHHHHHHHhhhHHHHHHHH
Confidence 33444455555555555566679999999999988888888888888888887777777766554443322 33344444
Q ss_pred HHhc
Q 043315 286 SLYY 289 (587)
Q Consensus 286 ~~ly 289 (587)
.+++
T Consensus 138 ~~~~ 141 (327)
T PF05982_consen 138 ARLF 141 (327)
T ss_pred HHHH
Confidence 4433
No 151
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=27.17 E-value=7.6e+02 Score=26.02 Aligned_cols=90 Identities=12% Similarity=0.105 Sum_probs=43.8
Q ss_pred HHHHHhhhhcCCCCCchhHHHHHHHHHHHHHHHH----HHHH--Hhcccccccccccc--hhHHHHHHHHHHHHHHHHHH
Q 043315 149 LGALLMGLIIPPGPPLGIAIIERFELVIFHFFLP----FFYI--RIGQYTNLSSIQNG--SRLISFEIIIGASYLGKFVG 220 (587)
Q Consensus 149 lGAFlaGL~lp~~~p~~~~l~ekl~~~~~~~flP----lFF~--~~Gl~~dl~~l~~~--~~~~~~~~l~~~a~~~K~l~ 220 (587)
+++.++|...|... ++. +++.. ..+..| ++|+ ..|++++++++... .+.. ..+-++.-++..-+.
T Consensus 17 i~~~~~g~~~P~~~---~~~-~~~~~--~~~~~~~~~~l~~mmf~mgl~L~~~df~~~~~~pk~-~~~~~~~qfvi~Pll 89 (328)
T TIGR00832 17 AAGVGLGVLFPSVF---QAL-AALEV--ATVSIPIAIGLILMMYPPLAKVDYSALGDVFKDPKG-LILSLFINWIIGPFL 89 (328)
T ss_pred HHHHHHHHhccccH---HHH-HHHHh--hhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHcCchH-HHHHHHHHHHHHHHH
Confidence 45667788887652 222 22210 112223 2233 44566666666421 2333 333444445555666
Q ss_pred HHHHHHHh-CCChHHHHHHHHHh--hhhhh
Q 043315 221 SLLIWVFI-KASIPNAVIFSCIL--SLKGI 247 (587)
Q Consensus 221 ~~l~~~~~-~~~~~~a~~lglll--~~kG~ 247 (587)
++..++.+ +.+.. +.+|+++ ++.|.
T Consensus 90 a~~l~~l~~~~~p~--l~~GliLv~~~Pgg 117 (328)
T TIGR00832 90 MFLLAWLFLRDLFE--YIAGLILLGLARCI 117 (328)
T ss_pred HHHHHHHHcCCCHH--HHHHHHHHHhcchH
Confidence 66666653 65533 6666655 34444
No 152
>COG2855 Predicted membrane protein [Function unknown]
Probab=27.11 E-value=7.8e+02 Score=26.18 Aligned_cols=89 Identities=16% Similarity=0.177 Sum_probs=50.2
Q ss_pred CchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHH---hhHHHH-HHHhhccccCCchH
Q 043315 2 DTTRILQVAKNALSVGMPCFLLSFNFTISLTLVLRENIPGMVGGSFPFLLSMVLSL---NYFPVV-HALSELNLLTSDLS 77 (587)
Q Consensus 2 D~~~l~~~~~~a~~ig~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~l~lg~~ls~---Ts~pVv-~iL~el~ll~s~~G 77 (587)
+++++...|.+.+.+-.......+++++.++.+++.. ...++.+|.-.|+ ++..-+ +++. -+.+-.
T Consensus 84 tl~~i~~~G~~~v~~~~~~l~~t~~~~~~lg~~lgld------~~~a~Lia~GssICGasAiaA~~pvik----a~~~ev 153 (334)
T COG2855 84 TLSDIADVGGSGVLIIAITLSSTFLFAYFLGKLLGLD------KKLALLIAAGSSICGASAIAATAPVIK----AEEEEV 153 (334)
T ss_pred eHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHhCCC------HHHHHHHHccchhhHHHHHHHhCCcCC----CCcccc
Confidence 4566777788888777777777777777777766532 2455665543333 344434 4443 344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043315 78 QLAISCAILHKTIGWLSVALTSA 100 (587)
Q Consensus 78 rlals~avi~Di~~~ill~i~~~ 100 (587)
..+++.-.+=..++.++.-.+..
T Consensus 154 a~aIa~V~lfgtia~llyP~l~~ 176 (334)
T COG2855 154 AVAIAVVVLFGTLAMLLYPLLYP 176 (334)
T ss_pred ceehhhHHHHHHHHHHHHHHHHH
Confidence 44554444444445555444433
No 153
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=27.06 E-value=8.3e+02 Score=26.47 Aligned_cols=94 Identities=10% Similarity=0.115 Sum_probs=47.2
Q ss_pred HHHH-HHHHHHHHHHHhChhHHHHHHHhhhhcCCCCCchhHHHHHHHHHHHHHHHHHH-HHHhcccccccccccc-hhHH
Q 043315 128 VLAI-GALVMGFLSDAIGTTYLLGALLMGLIIPPGPPLGIAIIERFELVIFHFFLPFF-YIRIGQYTNLSSIQNG-SRLI 204 (587)
Q Consensus 128 i~~i-~~~~~a~lae~~G~~~ilGAFlaGL~lp~~~p~~~~l~ekl~~~~~~~flPlF-F~~~Gl~~dl~~l~~~-~~~~ 204 (587)
++-+ .+++++++. =.-.+.+|.|++|-.+.+. ..-+++.+..+.-...+ .-+| -.++|...+-..+.+. ++.
T Consensus 267 lFPivv~i~~~ll~--P~a~PLiGmlmfGNllrEs-GVv~rLs~taqn~L~ni-vTIfLGl~VGa~~~A~~FL~~~tL~- 341 (433)
T PRK15477 267 LFPVVLLLLVALLL--PDAAPLLGMFCFGNLMRES-GVVERLSDTVQNGLINI-VTIFLGLSVGAKLVADKFLQPQTLG- 341 (433)
T ss_pred HHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHH-HHHHHHHHhhhhccHHhhCChHHHH-
Confidence 3434 444444442 2346789999999999987 33344444333222222 1222 2567777776555433 332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043315 205 SFEIIIGASYLGKFVGSLLIWVF 227 (587)
Q Consensus 205 ~~~~l~~~a~~~K~l~~~l~~~~ 227 (587)
++.+=++++..-..++.+.+++
T Consensus 342 -Il~LGlvAF~~~TagGvL~aKl 363 (433)
T PRK15477 342 -ILLLGVIAFGIGTAAGVLMAKL 363 (433)
T ss_pred -HHHHHHHHHHHhhhHHHHHHHH
Confidence 3333334444444444444443
No 154
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=26.95 E-value=8.4e+02 Score=26.46 Aligned_cols=94 Identities=10% Similarity=0.115 Sum_probs=47.2
Q ss_pred HHHH-HHHHHHHHHHHhChhHHHHHHHhhhhcCCCCCchhHHHHHHHHHHHHHHHHHH-HHHhcccccccccccc-hhHH
Q 043315 128 VLAI-GALVMGFLSDAIGTTYLLGALLMGLIIPPGPPLGIAIIERFELVIFHFFLPFF-YIRIGQYTNLSSIQNG-SRLI 204 (587)
Q Consensus 128 i~~i-~~~~~a~lae~~G~~~ilGAFlaGL~lp~~~p~~~~l~ekl~~~~~~~flPlF-F~~~Gl~~dl~~l~~~-~~~~ 204 (587)
++-+ .+++++++. =.-.+.+|.|++|-.+.+. ..-+++.+..+.-...+ .-+| -.++|...+-..+.+. ++.
T Consensus 267 lFPivv~i~~~ll~--P~a~PLiGmlmfGNllrEs-GVv~rLs~taqn~L~ni-vTIfLGl~VGa~~~A~~FL~~~tL~- 341 (433)
T PRK15476 267 LFPVVLLLLVALLL--PDAAPLLGMFCFGNLMRES-GVVERLSDTVQNGLINI-VTIFLGLSVGAKLVADKFLQPQTLG- 341 (433)
T ss_pred HHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHH-HHHHHHHHhhhhccHHhhCChHHHH-
Confidence 3434 444444442 2346789999999999987 33344444333222222 1222 2567777766555433 332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 043315 205 SFEIIIGASYLGKFVGSLLIWVF 227 (587)
Q Consensus 205 ~~~~l~~~a~~~K~l~~~l~~~~ 227 (587)
++.+=++++..-..++.+.+++
T Consensus 342 -Il~LGlvAF~~~TagGvL~aKl 363 (433)
T PRK15476 342 -ILLLGVIAFGIGTAAGVLMAKL 363 (433)
T ss_pred -HHHHHHHHHHHhhhHHHHHHHH
Confidence 3333334444444444444443
No 155
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=26.60 E-value=6.7e+02 Score=25.20 Aligned_cols=175 Identities=17% Similarity=0.136 Sum_probs=91.3
Q ss_pred cccCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHcCCCCcchhHH----HHHH-HHHHHHHHHHHhC
Q 043315 70 NLLTSDLSQLAISCAILHKTIGWLSVALTSAIIKSDKGPAVCWIIKINPEGKPVKEIY----VLAI-GALVMGFLSDAIG 144 (587)
Q Consensus 70 ~ll~s~~Grlals~avi~Di~~~ill~i~~~~~~s~~rp~~~~l~~r~~~g~~~~e~~----i~~i-~~~~~a~lae~~G 144 (587)
.+.+.++-..--++..++++++--..++...+.+ -|+. +||+ .+.+. +..+ -+.....++.++|
T Consensus 48 ~~~~i~Y~~Y~~g~~~i~~lLgPAtVAlAvPLYk--q~~~----ik~~-----w~~I~~g~~vGs~~ai~s~~llak~~g 116 (230)
T COG1346 48 LLFGISYEDYMKGGQWINFLLGPATVALAVPLYK--QRHL----IKRH-----WKPILAGVLVGSVVAIISGVLLAKLFG 116 (230)
T ss_pred HHcCCCHHHHhcccHHHHHHHHHHHHHHhhHHHH--HHHH----HHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5567788888888999999988876666554431 1222 2221 11111 1111 2333335566667
Q ss_pred hhHHHHHHHhhhhcCCC--CCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHH
Q 043315 145 TTYLLGALLMGLIIPPG--PPLGIAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQNGSRLISFEIIIGASYLGKFVGSL 222 (587)
Q Consensus 145 ~~~ilGAFlaGL~lp~~--~p~~~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~~~~~~~~~~l~~~a~~~K~l~~~ 222 (587)
++..+-. -.+|+. -|.+-++.+++. .. +.+- +..+++.+++|-.+|..
T Consensus 117 ~~~~~~~----Sl~PkSvTTpiAm~vs~~iG----------------------Gi--p~lt--av~Vi~tGi~Gavlg~~ 166 (230)
T COG1346 117 LSPELIL----SLLPKSVTTPIAMEVSESIG----------------------GI--PALT--AVFVILTGILGAVLGPL 166 (230)
T ss_pred CCHHHHH----HhcccccccHHHHHHHHhcC----------------------Cc--hHHH--HHHHHHHHHHHHHHHHH
Confidence 6655432 123332 122222222211 11 1222 34455556666666655
Q ss_pred HHHHHhCCChHHHHHHHHHhhhhhhHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 043315 223 LIWVFIKASIPNAVIFSCILSLKGIMDLIFILRWRIRKLIDKDTFTLAMLTHTAVTAVRTPLISLYY 289 (587)
Q Consensus 223 l~~~~~~~~~~~a~~lglll~~kG~~~li~~~i~~~~gli~~~~f~~lvl~~lvtt~i~~plv~~ly 289 (587)
+ .+++++..+.+.-+++..+..|.=.--....+.+.|.++ --.|++..++|+++.|.+.+.++
T Consensus 167 l-lk~~~i~~~~ArGla~G~~sHa~GTara~E~g~~eGa~s---sL~m~L~Gi~t~~~aPll~~l~~ 229 (230)
T COG1346 167 L-LKLLRIRHPVARGLALGTASHALGTARAIELGEEEGAMS---SLAMVLCGIITVLLAPLLAHLIL 229 (230)
T ss_pred H-HHHhccCcHHHhHHhhcchhhhhhhHHHHHcCchHHHHH---HHHHHHHHHHHHHHHHHHHHHhc
Confidence 5 556666655555555555555544444444444333322 22577888898888888887765
No 156
>PRK09982 universal stress protein UspD; Provisional
Probab=26.01 E-value=1.1e+02 Score=27.48 Aligned_cols=11 Identities=36% Similarity=0.697 Sum_probs=9.3
Q ss_pred CCCcEEEEccc
Q 043315 534 NDYDLVVVGKR 544 (587)
Q Consensus 534 ~~~dLviVGr~ 544 (587)
.+.||+|+|++
T Consensus 102 ~~aDLIVmG~~ 112 (142)
T PRK09982 102 EQCDLLVCGHH 112 (142)
T ss_pred cCCCEEEEeCC
Confidence 56999999975
No 157
>PRK15005 universal stress protein F; Provisional
Probab=25.84 E-value=1.7e+02 Score=25.88 Aligned_cols=73 Identities=16% Similarity=0.148 Sum_probs=35.3
Q ss_pred HHHHHHHhhccCCCceEEEEEEecChHHHHHHHHhhc--CCCcEEEEcccCCCCCccccCCCCCCCCCcccccccccccC
Q 043315 497 NVINDFKSRNLGNACVLCHHVDVTNTLEAWEVIRSSD--NDYDLVVVGKRRRPNSSRERDMTPWTDYEELRVIGDMLASQ 574 (587)
Q Consensus 497 ~~~~~~~~~~~~~~~v~y~e~~v~~~~~~~~~i~~~~--~~~dLviVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~Las~ 574 (587)
+.++++.+.... ..+.+... +..|.-. +.|.+.. .+.||+|+|++++ |+.+| =+|-..+-+.
T Consensus 70 ~~l~~~~~~~~~-~~~~~~~~-v~~G~p~-~~I~~~a~~~~~DLIV~Gs~~~-------~~~~~----llGS~a~~vl-- 133 (144)
T PRK15005 70 SQLEEIIKKFKL-PTDRVHVH-VEEGSPK-DRILELAKKIPADMIIIASHRP-------DITTY----LLGSNAAAVV-- 133 (144)
T ss_pred HHHHHHHHHhCC-CCCceEEE-EeCCCHH-HHHHHHHHHcCCCEEEEeCCCC-------Cchhe----eecchHHHHH--
Confidence 445555544322 22223223 3345323 3343333 4799999997632 22222 2354444444
Q ss_pred CCCCCCccEEEeC
Q 043315 575 DFCGGMNPVLVVQ 587 (587)
Q Consensus 575 d~~~~~~svLVvq 587 (587)
+.++++||||.
T Consensus 134 --~~a~cpVlvVr 144 (144)
T PRK15005 134 --RHAECSVLVVR 144 (144)
T ss_pred --HhCCCCEEEeC
Confidence 24455888874
No 158
>PRK11103 PTS system mannose-specific transporter subunit IID; Provisional
Probab=25.24 E-value=3.1e+02 Score=28.41 Aligned_cols=21 Identities=14% Similarity=0.252 Sum_probs=18.4
Q ss_pred HHHHhChhHHHHHHHhhhhcC
Q 043315 139 LSDAIGTTYLLGALLMGLIIP 159 (587)
Q Consensus 139 lae~~G~~~ilGAFlaGL~lp 159 (587)
-.++++-|+.+|+|+.|+.++
T Consensus 68 hl~fFNT~p~~~~~I~Gi~~a 88 (282)
T PRK11103 68 HLEFFNTHPYVAAPILGVTLA 88 (282)
T ss_pred HHHHHCCCchhhhHHHHHHHH
Confidence 345789999999999999988
No 159
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=24.25 E-value=4.8e+02 Score=27.05 Aligned_cols=70 Identities=9% Similarity=0.110 Sum_probs=51.9
Q ss_pred cCCceEEEEEEEEecCCChHHHHHHHHhhcCCCEEEeccCCCccccccc---hhHHHhhccCCCcEEEEEeCCCC
Q 043315 410 KSSQVTIQPFILIAPYKTMYESISKLAQDEFIPFIILPSHQSHKMQQGG---GFNCKIQNCAPCSVGIYVDRGIN 481 (587)
Q Consensus 410 ~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~~~~~dg~---~~n~~vl~~apcsVgIlvdRg~~ 481 (587)
..+.-.|-.|.... ..+.+.|++.|++.+++.||--....-...+.. .+.+...+++..+|++=-|+|..
T Consensus 12 ~~~~yAV~AfN~~n--~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~VPValHLDHg~~ 84 (282)
T TIGR01858 12 QAGGYAVPAFNIHN--LETIQAVVETAAEMRSPVILAGTPGTFKHAGTEYIVALCSAASTTYNMPLALHLDHHES 84 (282)
T ss_pred HHcCCeEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEeCccHHhhCCHHHHHHHHHHHHHHCCCCEEEECCCCCC
Confidence 34455566777777 578899999999999999996544333221222 67788899999999999999875
No 160
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=24.13 E-value=81 Score=35.43 Aligned_cols=52 Identities=19% Similarity=0.279 Sum_probs=37.3
Q ss_pred HHHHHHHHhhcCCCEEEec---cCCCccccccc-----hhHHHhhccCCCcEEEEEeCCC
Q 043315 429 YESISKLAQDEFIPFIILP---SHQSHKMQQGG-----GFNCKIQNCAPCSVGIYVDRGI 480 (587)
Q Consensus 429 ~~dI~~~A~e~~~~lIilp---~h~~~~~~dg~-----~~n~~vl~~apcsVgIlvdRg~ 480 (587)
.++||.+|+++++|||+++ ||.+...+.-- -+-+.-|..-||..=++-|.++
T Consensus 41 FeEIl~iA~e~~VDmiLlGGDLFHeNkPSr~~L~~~i~lLRryClgdkP~~le~lSD~s~ 100 (646)
T KOG2310|consen 41 FEEILEIAQENDVDMILLGGDLFHENKPSRKTLHRCLELLRRYCLGDKPVQLEILSDQSV 100 (646)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCCccHHHHHHHHHHHHHHccCCCceeeEEecccce
Confidence 3689999999999999999 78765431100 3334446677999888877754
No 161
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=23.35 E-value=8.2e+02 Score=25.09 Aligned_cols=18 Identities=11% Similarity=0.250 Sum_probs=9.8
Q ss_pred HHHHHHHhcccccccccc
Q 043315 181 LPFFYIRIGQYTNLSSIQ 198 (587)
Q Consensus 181 lPlFF~~~Gl~~dl~~l~ 198 (587)
+.+-+...|++++...+.
T Consensus 14 l~~~m~~~G~~l~~~~~~ 31 (286)
T TIGR00841 14 LFLIMFSMGCTLEFEDFK 31 (286)
T ss_pred HHHHHHHccCCCcHHHHH
Confidence 333445666666665553
No 162
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=22.87 E-value=1.5e+02 Score=32.53 Aligned_cols=50 Identities=12% Similarity=0.129 Sum_probs=32.5
Q ss_pred HHHHHHHhhccCCCceEEEEEEec---ChHHHHHHHHhhcCC-CcEEEEcccCCC
Q 043315 497 NVINDFKSRNLGNACVLCHHVDVT---NTLEAWEVIRSSDND-YDLVVVGKRRRP 547 (587)
Q Consensus 497 ~~~~~~~~~~~~~~~v~y~e~~v~---~~~~~~~~i~~~~~~-~dLviVGr~~~~ 547 (587)
++++....+... -++.+....|- ...++.++|+..+.. ||++|+||+.|.
T Consensus 151 D~~~~~~~r~p~-~~~~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS 204 (438)
T PRK00286 151 DILTVLRRRFPL-VEVIIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGGS 204 (438)
T ss_pred HHHHHHHhcCCC-CeEEEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCC
Confidence 455555544322 35666665553 235677888887653 899999999985
No 163
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=22.81 E-value=1.4e+02 Score=32.26 Aligned_cols=54 Identities=20% Similarity=0.218 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccc--hhHHHHHHHHHHHHHHHHHHHHH
Q 043315 169 IERFELVIFHFFLPFFYIRIGQYTNLSSIQNG--SRLISFEIIIGASYLGKFVGSLL 223 (587)
Q Consensus 169 ~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~~--~~~~~~~~l~~~a~~~K~l~~~l 223 (587)
...++..+++.++.+||..+|+.+.-+.+..+ ++.. ..+-++.++.|=++...+
T Consensus 56 ~~~l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~-a~lPi~AAlGGmivPAli 111 (388)
T PRK09561 56 NKPLLLWINDGLMAVFFLLIGLEVKRELLEGSLASRRQ-AALPVIAAIGGMLVPALI 111 (388)
T ss_pred CCcHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCChHH-HHHHHHHHHhchHHHHHH
Confidence 33466777889999999999999885443211 2333 334444454444444433
No 164
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=22.78 E-value=4e+02 Score=27.18 Aligned_cols=44 Identities=14% Similarity=0.113 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHhCCChHHHHHHHHHhhhhhhHHHHHHHHhh
Q 043315 214 YLGKFVGSLLIWVFIKASIPNAVIFSCILSLKGIMDLIFILRWR 257 (587)
Q Consensus 214 ~~~K~l~~~l~~~~~~~~~~~a~~lglll~~kG~~~li~~~i~~ 257 (587)
=+++-..|..++++.|++.+++...+++|+..-...-.++....
T Consensus 161 GiSRSG~Ti~~~l~~G~~r~~A~~fSFllsiP~ilga~~l~~~~ 204 (259)
T PF02673_consen 161 GISRSGATITAGLLLGLDREEAARFSFLLSIPAILGAGLLELKD 204 (259)
T ss_pred CcChHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34688889999999999999999999999976666655555443
No 165
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=22.48 E-value=1.2e+02 Score=27.18 Aligned_cols=12 Identities=50% Similarity=0.775 Sum_probs=10.5
Q ss_pred CCCcEEEEcccC
Q 043315 534 NDYDLVVVGKRR 545 (587)
Q Consensus 534 ~~~dLviVGr~~ 545 (587)
.+.||+|+|+++
T Consensus 102 ~~~DLIV~Gs~~ 113 (144)
T PRK15118 102 YDMDLVVCGHHQ 113 (144)
T ss_pred hCCCEEEEeCcc
Confidence 479999999984
No 166
>PRK10116 universal stress protein UspC; Provisional
Probab=22.41 E-value=1.3e+02 Score=26.56 Aligned_cols=28 Identities=14% Similarity=0.353 Sum_probs=16.9
Q ss_pred ecChHHHHHHHHhh-cCCCcEEEEcccCC
Q 043315 519 VTNTLEAWEVIRSS-DNDYDLVVVGKRRR 546 (587)
Q Consensus 519 v~~~~~~~~~i~~~-~~~~dLviVGr~~~ 546 (587)
+..|.....+++.. +.++||+|+|.++.
T Consensus 85 ~~~G~~~~~I~~~a~~~~~DLiV~g~~~~ 113 (142)
T PRK10116 85 IAYGELSEHILEVCRKHHFDLVICGNHNH 113 (142)
T ss_pred EecCCHHHHHHHHHHHhCCCEEEEcCCcc
Confidence 34444333334333 24799999999874
No 167
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=22.22 E-value=5.8e+02 Score=26.48 Aligned_cols=136 Identities=13% Similarity=0.104 Sum_probs=81.9
Q ss_pred cCCceEEEEEEEEecCCChHHHHHHHHhhcCCCEEEeccCCCccccccc----hhHHHhhccCCCcEEEEEeCCCC----
Q 043315 410 KSSQVTIQPFILIAPYKTMYESISKLAQDEFIPFIILPSHQSHKMQQGG----GFNCKIQNCAPCSVGIYVDRGIN---- 481 (587)
Q Consensus 410 ~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~~~~~dg~----~~n~~vl~~apcsVgIlvdRg~~---- 481 (587)
..+.-.|-.|.... -.+...|.+.|++.+++.||--....... -|. .+.....++++.+|++=-|+|..
T Consensus 14 ~~~~yaV~AfN~~n--~e~~~avi~AAee~~sPvIiq~~~~~~~~-~g~~~~~~~~~~~A~~~~VPV~lHLDHg~~~e~i 90 (284)
T PRK09195 14 QRGGYAVPAFNIHN--LETMQVVVETAAELHSPVIIAGTPGTFSY-AGTEYLLAIVSAAAKQYHHPLALHLDHHEKFDDI 90 (284)
T ss_pred HHcCceEEEEEeCC--HHHHHHHHHHHHHhCCCEEEEcChhHHhh-CCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHH
Confidence 44555666777777 57889999999999999998654332222 122 66788889999999999999865
Q ss_pred -------------CCccccCchhhcchHHHHHHHHhhcc----------CC-CceEEE--EEEecChHHHHHHHHhhcCC
Q 043315 482 -------------DLIEAEDVSERILDDNVINDFKSRNL----------GN-ACVLCH--HVDVTNTLEAWEVIRSSDND 535 (587)
Q Consensus 482 -------------dd~~~~~~~~~~~d~~~~~~~~~~~~----------~~-~~v~y~--e~~v~~~~~~~~~i~~~~~~ 535 (587)
|-+.-+-+..-+...+..+--+.... +. +.+... +...+|.+|..+.+++..-|
T Consensus 91 ~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD 170 (284)
T PRK09195 91 AQKVRSGVRSVMIDGSHLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDEADALYTDPAQAREFVEATGID 170 (284)
T ss_pred HHHHHcCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCcccccccccCCCHHHHHHHHHHHCcC
Confidence 11111111122233333333332221 00 111111 12356788888888877666
Q ss_pred CcEEEEcccCCCC
Q 043315 536 YDLVVVGKRRRPN 548 (587)
Q Consensus 536 ~dLviVGr~~~~~ 548 (587)
.--+=+|.-||..
T Consensus 171 ~LAvaiGt~HG~y 183 (284)
T PRK09195 171 SLAVAIGTAHGMY 183 (284)
T ss_pred EEeeccCcccccc
Confidence 6666778888864
No 168
>PRK09546 zntB zinc transporter; Reviewed
Probab=20.91 E-value=1.7e+02 Score=30.73 Aligned_cols=29 Identities=14% Similarity=0.130 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHH--Hhccccc-ccccccc
Q 043315 172 FELVIFHFFLPFFYI--RIGQYTN-LSSIQNG 200 (587)
Q Consensus 172 l~~~~~~~flPlFF~--~~Gl~~d-l~~l~~~ 200 (587)
+-++++.+|+|+=|+ .-||+++ ++.+.+.
T Consensus 266 ~Ltilt~IflPlT~IaGiyGMNf~~mPel~~~ 297 (324)
T PRK09546 266 TMSLMAMVFLPTTFLTGLFGVNLGGIPGGGWP 297 (324)
T ss_pred HHHHHHHHHHHHHHHHhhhccccCCCCCcCCc
Confidence 334557899997766 8899987 6666543
No 169
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=20.75 E-value=1.5e+02 Score=32.23 Aligned_cols=55 Identities=16% Similarity=0.085 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccc--hhHHHHHHHHHHHHHHHHHHHHH
Q 043315 168 IIERFELVIFHFFLPFFYIRIGQYTNLSSIQNG--SRLISFEIIIGASYLGKFVGSLL 223 (587)
Q Consensus 168 l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~~--~~~~~~~~l~~~a~~~K~l~~~l 223 (587)
+...++..+++.++.+||..+|+.+.-+.+..+ +... ..+-++.++.|=++...+
T Consensus 55 l~~sl~~wiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~-a~lPi~AAlGGmivPAlI 111 (389)
T PRK09560 55 IGKSLLHWINDGLMAVFFLLVGLEIKRELLEGQLSSWQQ-RILPAIAAVGGMVVPALI 111 (389)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHH-HHHHHHHHHhchHHHHHH
Confidence 344566777889999999999999875433211 2333 334444444444444433
No 170
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=20.75 E-value=1e+03 Score=25.20 Aligned_cols=243 Identities=14% Similarity=0.120 Sum_probs=123.1
Q ss_pred CCchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHhhHHHH-HHHhhccccCCchHHH
Q 043315 1 MDTTRILQVAKNALSVGMPCFLLSFNFTISLTLVLRENIPGMVGGSFPFLLSMVLSLNYFPVV-HALSELNLLTSDLSQL 79 (587)
Q Consensus 1 mD~~~l~~~~~~a~~ig~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts~pVv-~iL~el~ll~s~~Grl 79 (587)
.|++.+.|.++|-+.+=+... +..++|+.+++...+.+.. +. .=.+.+++-|-.+-- ..-.=-+.+..| .-
T Consensus 77 cd~Rki~Klg~rll~ifli~s-v~~vlGfIl~yp~~ksf~g-d~----Wka~gmi~gSytGGSaNmAAmqaaLeVP--~~ 148 (384)
T COG5505 77 CDVRKIFKLGRRLLFIFLISS-VGTVLGFILAYPLLKSFIG-DL----WKAGGMISGSYTGGSANMAAMQAALEVP--GE 148 (384)
T ss_pred ccHHHHHhhcchhhHHHHHHH-HHHHHHHHHHHHHHhhhcc-hH----HhhhhheeeeeeCCcchHHHHHhhhcCC--HH
Confidence 378889999999876655443 4455677777666544321 11 111122222111111 100111222333 34
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHH-c-C------------------C-CCcchhHHH-HHH-HHHHH
Q 043315 80 AISCAILHKTIGWLSVALTSAIIKSDKGPAVCWIIKI-N-P------------------E-GKPVKEIYV-LAI-GALVM 136 (587)
Q Consensus 80 als~avi~Di~~~ill~i~~~~~~s~~rp~~~~l~~r-~-~------------------~-g~~~~e~~i-~~i-~~~~~ 136 (587)
..+++.+-|.++.-++..+.... .| ..|..|+ + | + .||.+-..+ +.. ..+..
T Consensus 149 ~fsatlaaDtv~ySll~~lli~i----Vp-y~~kw~~~tkpdesKL~A~~~e~a~~e~ywKrkp~Sl~D~afl~Gislav 223 (384)
T COG5505 149 YFSATLAADTVMYSLLFFLLISI----VP-YKWKWRHYTKPDESKLKADGNEGASAESYWKRKPISLKDIAFLAGISLAV 223 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HH-HHHHHhhccCccHHHHhhhhhhhhhhhhhhhcCCccHHHHHHHhhHHHHH
Confidence 57889999988775544332211 11 1111111 0 0 0 123322222 222 44444
Q ss_pred HHHHHHhChhHHH---------------HHHHhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccch
Q 043315 137 GFLSDAIGTTYLL---------------GALLMGLIIPPGPPLGIAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQNGS 201 (587)
Q Consensus 137 a~lae~~G~~~il---------------GAFlaGL~lp~~~p~~~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~~~ 201 (587)
+.++..+|-+... =-=+.||++.-. |+++- .-.+.+ ..+++=.|++.++.-.|++.+....
T Consensus 224 ~AVa~~Is~~l~~~s~gl~~~~gt~t~v~vsi~gLi~aLt-Pf~~l--pgs~el-gtv~lY~~v~vias~Ad~~~i~taP 299 (384)
T COG5505 224 VAVAMKISGYLKSISHGLLTGLGTQTLVLVSITGLIIALT-PFERL--PGSQEL-GTVLLYLFVVVIASPADLRLIVTAP 299 (384)
T ss_pred HHHHHHHHhhccccccccccccceeeehHHHHHHHHHHhC-ccccC--Cchhhh-hHHHHHHHHHHhccchhHHHHHhhh
Confidence 5555554433221 112345555544 33211 112333 3567788999999999998876543
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhhhhhhHHHHHHHHhhhcCCCCH
Q 043315 202 RLISFEIIIGASYLGKFVGSLLIWVFIKASIPNAVIFSCILSLKGIMDLIFILRWRIRKLIDK 264 (587)
Q Consensus 202 ~~~~~~~l~~~a~~~K~l~~~l~~~~~~~~~~~a~~lglll~~kG~~~li~~~i~~~~gli~~ 264 (587)
.+. +..++ ..+...+..+..+++++.++-+-.. +.+-|.-|-.+--+...+++..++..
T Consensus 300 ~~i-~~gf~--il~~h~~v~f~~~KlF~~dL~~i~~-AslAniGG~~sAp~~A~A~nr~lv~~ 358 (384)
T COG5505 300 LII-LFGFI--ILISHLAVSFAAGKLFRVDLEEILL-ASLANIGGPTSAPAMAIAKNRELVAP 358 (384)
T ss_pred HHH-HHHHH--HHHHHHHHHHHHHHHHHhHHHHHHH-HHHhccCCccchhHHHhhcCchhcch
Confidence 333 22232 2346778888889999988766544 44457777777777777776555443
Done!