Query 043315
Match_columns 587
No_of_seqs 261 out of 1513
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 05:58:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043315.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043315hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zcd_A Na(+)/H(+) antiporter 1 99.9 3.5E-23 1.2E-27 218.0 4.8 264 12-290 96-385 (388)
2 3s3t_A Nucleotide-binding prot 97.9 1.9E-05 6.6E-10 70.7 8.1 132 318-475 7-145 (146)
3 3loq_A Universal stress protei 97.9 3.2E-05 1.1E-09 78.0 10.1 135 317-478 23-163 (294)
4 3ab8_A Putative uncharacterize 97.9 0.0001 3.4E-09 73.2 13.3 133 318-476 2-148 (268)
5 3mt0_A Uncharacterized protein 97.9 0.00016 5.6E-09 72.7 14.2 117 317-476 8-127 (290)
6 3hgm_A Universal stress protei 97.8 2.3E-05 7.7E-10 70.2 6.8 133 318-474 4-146 (147)
7 3dlo_A Universal stress protei 97.8 5.4E-05 1.9E-09 69.2 8.6 126 317-475 25-154 (155)
8 1mjh_A Protein (ATP-binding do 97.8 0.00013 4.6E-09 66.5 11.2 135 318-476 7-158 (162)
9 1tq8_A Hypothetical protein RV 97.8 0.00011 3.8E-09 67.7 10.1 133 317-476 18-157 (163)
10 3fg9_A Protein of universal st 97.7 3.3E-05 1.1E-09 70.2 6.2 134 317-475 16-155 (156)
11 2dum_A Hypothetical protein PH 97.7 0.00011 3.8E-09 67.7 9.5 135 318-476 7-155 (170)
12 3fdx_A Putative filament prote 97.7 5.4E-05 1.8E-09 67.4 7.0 105 365-475 32-142 (143)
13 3cis_A Uncharacterized protein 97.7 0.00014 4.7E-09 73.9 10.8 133 317-478 20-162 (309)
14 3tnj_A Universal stress protei 97.6 0.00011 3.6E-09 66.2 7.5 136 317-476 7-146 (150)
15 2z08_A Universal stress protei 97.6 0.00012 4.1E-09 64.9 7.4 129 318-475 4-136 (137)
16 3idf_A USP-like protein; unive 97.6 0.00013 4.3E-09 64.6 7.2 130 318-475 3-137 (138)
17 1jmv_A USPA, universal stress 97.4 0.00031 1.1E-08 62.3 7.2 132 318-478 4-139 (141)
18 3olq_A Universal stress protei 97.1 0.00057 1.9E-08 69.4 6.8 138 317-478 8-151 (319)
19 1q77_A Hypothetical protein AQ 96.8 0.0036 1.2E-07 55.1 8.7 126 318-474 6-136 (138)
20 3mt0_A Uncharacterized protein 96.6 0.0031 1.1E-07 63.2 7.0 50 426-476 223-275 (290)
21 3loq_A Universal stress protei 96.5 0.006 2.1E-07 61.1 8.6 116 316-475 170-288 (294)
22 2gm3_A Unknown protein; AT3G01 96.4 0.0057 2E-07 56.3 7.1 76 399-478 86-164 (175)
23 3olq_A Universal stress protei 96.3 0.0048 1.6E-07 62.4 6.3 54 426-480 252-308 (319)
24 3cis_A Uncharacterized protein 94.5 0.088 3E-06 52.9 8.5 128 317-475 172-304 (309)
25 3zux_A Transporter, ASBTNM; tr 93.4 7.8 0.00027 39.5 22.8 106 148-257 175-282 (332)
26 3ab8_A Putative uncharacterize 92.7 0.16 5.5E-06 49.7 6.6 113 317-475 155-267 (268)
27 3zux_A Transporter, ASBTNM; tr 75.7 54 0.0018 33.2 15.0 89 151-248 27-117 (332)
28 3idf_A USP-like protein; unive 69.9 7.5 0.00026 33.1 6.0 51 493-546 62-112 (138)
29 1q77_A Hypothetical protein AQ 62.4 8.9 0.0003 32.6 4.9 22 525-546 97-120 (138)
30 1mjh_A Protein (ATP-binding do 57.6 10 0.00035 33.3 4.6 75 495-587 81-158 (162)
31 3dlo_A Universal stress protei 50.7 9 0.00031 33.9 3.0 49 525-587 105-155 (155)
32 3hgm_A Universal stress protei 42.0 17 0.00059 30.9 3.4 22 525-546 98-121 (147)
33 3s3t_A Nucleotide-binding prot 36.9 34 0.0012 29.0 4.5 77 493-587 65-146 (146)
34 3tnj_A Universal stress protei 36.4 9.2 0.00031 33.0 0.6 50 492-546 69-120 (150)
35 3fdx_A Putative filament prote 36.0 24 0.00082 29.9 3.3 48 524-586 93-142 (143)
36 2z08_A Universal stress protei 34.4 23 0.0008 29.9 3.0 75 494-587 61-137 (137)
37 2dum_A Hypothetical protein PH 33.8 28 0.00097 30.6 3.5 22 525-546 105-128 (170)
38 3fg9_A Protein of universal st 30.6 37 0.0013 29.3 3.7 39 534-587 118-156 (156)
39 1tq8_A Hypothetical protein RV 29.7 70 0.0024 28.1 5.5 48 495-546 79-130 (163)
40 2k4m_A TR8_protein, UPF0146 pr 27.7 51 0.0017 29.6 3.9 39 416-454 90-128 (153)
41 2lci_A Protein OR36; structura 23.4 75 0.0026 25.9 3.8 85 426-532 36-120 (134)
42 2gm3_A Unknown protein; AT3G01 20.1 72 0.0025 28.0 3.6 22 525-546 112-135 (175)
No 1
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=99.87 E-value=3.5e-23 Score=218.01 Aligned_cols=264 Identities=11% Similarity=0.053 Sum_probs=193.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHhhHHHH-HHHhhcccc-CCchHHHHHHHHHHHHH
Q 043315 12 NALSVGMPCFLLSFNFTISLTLVLRENIPGMVGGSFPFLLSMVLSLNYFPVV-HALSELNLL-TSDLSQLAISCAILHKT 89 (587)
Q Consensus 12 ~a~~ig~~~~~ip~~~g~~~~~~l~~~~~~~~~~~~~l~lg~~ls~Ts~pVv-~iL~el~ll-~s~~Grlals~avi~Di 89 (587)
.+...++.|+++|++++.. +... ......-..+.+.|+.+.. .+|..++.. .+..++.+++.|++||+
T Consensus 96 ~p~~aAlgGmivP~~iy~~----~~~~------~~~~~~gw~ip~ATdIAfal~vL~~lg~~~p~~l~~flLalAvvDDl 165 (388)
T 1zcd_A 96 FPVIAAIGGMIVPALLYLA----FNYA------DPITREGWAIPAATDIAFALGVLALLGSRVPLALKIFLMALAIIDDL 165 (388)
T ss_dssp HHHHHHHHHTTTTHHHHGG----GCCS------STTHHHHTSSSSCCCHHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HhcC------ChhhhhhhHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHH
Confidence 3789999999999988422 2111 1234455555566888888 888887664 45556999999999999
Q ss_pred HHHHHHHHHHHHhhc--C-----hhHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHhChhHHHHHHHhhhhcCCCC
Q 043315 90 IGWLSVALTSAIIKS--D-----KGPAVCWIIKINPEGKPVKEIYVLAIGALVMGFLSDAIGTTYLLGALLMGLIIPPGP 162 (587)
Q Consensus 90 ~~~ill~i~~~~~~s--~-----~rp~~~~l~~r~~~g~~~~e~~i~~i~~~~~a~lae~~G~~~ilGAFlaGL~lp~~~ 162 (587)
.+|++++++....-+ + ...+..++.+|.. +++...+.++.+++.+.++..|+|+++|+|++|+++|+.+
T Consensus 166 ~aiivIAvfyt~~~~~~~l~~~~~~~~~~~~l~r~~----v~~~~~y~~lgl~~w~~~~~sGvHatigg~l~Gl~ip~~~ 241 (388)
T 1zcd_A 166 GAIIIIALFYTNDLSMASLGVAAVAIAVLAVLNLCG----ARRTGVYILVGVVLWTAVLKSGVHATLAGVIVGFFIPLKE 241 (388)
T ss_dssp HHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHTT----CCCTHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHSCCCG
T ss_pred HHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHhc----chhHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHhccCCC
Confidence 999999988642111 1 2222334445532 1222233332335556679999999999999999999853
Q ss_pred ----CchhHHHHHHHHHHHHHHHHHH-HHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh---------
Q 043315 163 ----PLGIAIIERFELVIFHFFLPFF-YIRIGQYTNLSSIQNGSRLISFEIIIGASYLGKFVGSLLIWVFI--------- 228 (587)
Q Consensus 163 ----p~~~~l~ekl~~~~~~~flPlF-F~~~Gl~~dl~~l~~~~~~~~~~~l~~~a~~~K~l~~~l~~~~~--------- 228 (587)
+..+++++++++++..+++|+| |+..|+++|...+....-.. ...+++..++||.+|++..++..
T Consensus 242 ~~~~~~~~~le~~l~p~v~~~ilPlFaFanaGv~l~~~~~~~l~~~~-~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp 320 (388)
T 1zcd_A 242 KHGRSPAKRLEHVLHPWVAYLILPLFAFANAGVSLQGVTLDGLTSIL-PLGIIAGLLIGKPLGISLFCWLALRLKLAHLP 320 (388)
T ss_dssp GGSSCHHHHHHHHHHHHHHHTHHHHHHHHHCCCCCSSSCCCTHHHHS-STTTTHHHHHTTGGGSTTHHHHTSSCTTTCCC
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCeeecccchhhccChH-HHHHHHHHHHHHHHHHHHHHHHHHHhccCcCC
Confidence 3578999999999999999999 99999999985332110011 12344455889999966666666
Q ss_pred -CCChHHHHHHHHHhhhhhhHHHHHHHHhhhcCC--CCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 043315 229 -KASIPNAVIFSCILSLKGIMDLIFILRWRIRKL--IDKDTFTLAMLTHTAVTAVRTPLISLYYT 290 (587)
Q Consensus 229 -~~~~~~a~~lglll~~kG~~~li~~~i~~~~gl--i~~~~f~~lvl~~lvtt~i~~plv~~ly~ 290 (587)
|++|+|+..+|.+++.+++++++++++|++.+. +.++.+..++++++++++++|.++++.++
T Consensus 321 ~g~~~~~~~~vg~L~gigftmsL~Ia~laf~~~~~~~~~~ak~~il~~s~~s~i~g~~~L~~~~~ 385 (388)
T 1zcd_A 321 EGTTYQQIMVVGILCGIGFTMSIFIASLAFGSVDPELINWAKLGILVGSISSAVIGYSWLRVRLR 385 (388)
T ss_dssp CSCCGGGGTTHHHHTTCCHHHHHHHHHHHSTTSSCSSHHHHHHHHHHHHHTTTSTTTGGGTTTC-
T ss_pred CCCCHHHHHHHHHHhccchHHHHHHHHHhccCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999876 35777999999999999988888876553
No 2
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=97.94 E-value=1.9e-05 Score=70.68 Aligned_cols=132 Identities=14% Similarity=0.155 Sum_probs=84.2
Q ss_pred cceeeecCCcccccccccccCCCCCCCCCHHHHHHHHHHhcCCCCCCcEEEEEEeeeccCCCccccc--cccccccccCC
Q 043315 318 RKNLMENTPITQHKIYVENSKSGEKPRPFVHSLITLLKAFNSSEMSPLCACVLHLVELVGRAAPLLV--PHNTHKRKIKE 395 (587)
Q Consensus 318 ril~c~~~~~~~~~v~~~~~~~~~~~~~~v~~li~Ll~~~~~~~~sp~~v~~lhlvel~~r~s~~l~--~~~~~~~~~~~ 395 (587)
|||+| +...+ +-...+..+..+... ....++++|+++.......... ..+.. ....
T Consensus 7 ~ILv~---------~D~s~---------~s~~al~~A~~la~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~~~--~~~~ 64 (146)
T 3s3t_A 7 NILVP---------VDSSD---------AAQAAFTEAVNIAQR--HQANLTALYVVDDSAYHTPALDPVLSELL--DAEA 64 (146)
T ss_dssp EEEEE---------CCSSH---------HHHHHHHHHHHHHHH--HTCEEEEEEEEECCCCCCGGGHHHHHHHH--HHHH
T ss_pred eEEEE---------cCCCH---------HHHHHHHHHHHHHHh--cCCEEEEEEEecCccccccccccccHHHH--HHHH
Confidence 68888 77666 666666665554422 2257899999986543221100 00000 0112
Q ss_pred CchhHHHHHHHhhhcCCce-EEEEEEEEecCCChHHHHHH-HHhhcCCCEEEeccCCCccccc---cchhHHHhhccCCC
Q 043315 396 NSTDRIMRAMTKFSKSSQV-TIQPFILIAPYKTMYESISK-LAQDEFIPFIILPSHQSHKMQQ---GGGFNCKIQNCAPC 470 (587)
Q Consensus 396 ~~~~~i~~~f~~~~~~~~v-~v~~~~~vs~~~~m~~dI~~-~A~e~~~~lIilp~h~~~~~~d---g~~~n~~vl~~apc 470 (587)
...++.++.+.......++ .++...... +..+.|++ .|++.++|+|++|.|++..... | .+-++|++++||
T Consensus 65 ~~~~~~l~~~~~~~~~~g~~~~~~~~~~g---~~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~~~G-s~~~~vl~~~~~ 140 (146)
T 3s3t_A 65 AHAKDAMRQRQQFVATTSAPNLKTEISYG---IPKHTIEDYAKQHPEIDLIVLGATGTNSPHRVAVG-STTSYVVDHAPC 140 (146)
T ss_dssp HHHHHHHHHHHHHHTTSSCCCCEEEEEEE---CHHHHHHHHHHHSTTCCEEEEESCCSSCTTTCSSC-HHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHhcCCcceEEEEecC---ChHHHHHHHHHhhcCCCEEEECCCCCCCcceEEEc-chHHHHhccCCC
Confidence 2345555555554444456 666655554 67899999 9999999999999998765522 3 788999999999
Q ss_pred cEEEE
Q 043315 471 SVGIY 475 (587)
Q Consensus 471 sVgIl 475 (587)
+|-|+
T Consensus 141 pVlvV 145 (146)
T 3s3t_A 141 NVIVI 145 (146)
T ss_dssp EEEEE
T ss_pred CEEEe
Confidence 97654
No 3
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=97.91 E-value=3.2e-05 Score=78.05 Aligned_cols=135 Identities=12% Similarity=0.096 Sum_probs=83.0
Q ss_pred ccceeeecCCcccccccccccCCCCCCCCCHHHHHHHHHHhcCCCCCCcEEEEEEeeeccCCCcccccccccccc--ccC
Q 043315 317 LRKNLMENTPITQHKIYVENSKSGEKPRPFVHSLITLLKAFNSSEMSPLCACVLHLVELVGRAAPLLVPHNTHKR--KIK 394 (587)
Q Consensus 317 lril~c~~~~~~~~~v~~~~~~~~~~~~~~v~~li~Ll~~~~~~~~sp~~v~~lhlvel~~r~s~~l~~~~~~~~--~~~ 394 (587)
-|||+| +...+ +-...+..+..+... ....++++|+++....... ........ ...
T Consensus 23 ~~ILv~---------vD~s~---------~s~~al~~A~~lA~~--~~a~l~ll~v~~~~~~~~~--~~~~~~~~~~~~~ 80 (294)
T 3loq_A 23 NAMLLP---------TDLSE---------NSFKVLEYLGDFKKV--GVEEIGVLFVINLTKLSTV--SGGIDIDHYIDEM 80 (294)
T ss_dssp CEEEEE---------CCSCT---------GGGGGGGGHHHHHHT--TCCEEEEECCEECTTC-------CCCTTHHHHHH
T ss_pred ccEEEe---------cCCCH---------HHHHHHHHHHHHHhh--cCCEEEEEEEecCcccccc--cccccHHHHHHHH
Confidence 379999 87766 666666555555432 2367999999886532210 00000000 011
Q ss_pred CCchhHHHHHHHhhhcCCceEEEE-EEEEecCCChHHHHHHHHhhcCCCEEEeccCCCccccc---cchhHHHhhccCCC
Q 043315 395 ENSTDRIMRAMTKFSKSSQVTIQP-FILIAPYKTMYESISKLAQDEFIPFIILPSHQSHKMQQ---GGGFNCKIQNCAPC 470 (587)
Q Consensus 395 ~~~~~~i~~~f~~~~~~~~v~v~~-~~~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~~~~~d---g~~~n~~vl~~apc 470 (587)
....++.++.+.......++.++. ..... .+..+.| .|+++++|+||+|.|++..... | .+-+++++++||
T Consensus 81 ~~~~~~~l~~~~~~~~~~g~~~~~~~v~~~--g~~~~~I--~a~~~~~DliV~G~~g~~~~~~~~~G-s~~~~vl~~~~~ 155 (294)
T 3loq_A 81 SEKAEEVLPEVAQKIEAAGIKAEVIKPFPA--GDPVVEI--IKASENYSFIAMGSRGASKFKKILLG-SVSEGVLHDSKV 155 (294)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEECSSCCE--ECHHHHH--HHHHTTSSEEEEECCCCCHHHHHHHC-CHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHHcCCCcceeEeecc--CChhHhe--eeccCCCCEEEEcCCCCccccceeec-cHHHHHHhcCCC
Confidence 123455556555554445677776 33312 4668888 9999999999999997765422 3 677899999999
Q ss_pred cEEEEEeC
Q 043315 471 SVGIYVDR 478 (587)
Q Consensus 471 sVgIlvdR 478 (587)
+|-|+-+.
T Consensus 156 PVlvv~~~ 163 (294)
T 3loq_A 156 PVYIFKHD 163 (294)
T ss_dssp CEEEECCC
T ss_pred CEEEecCc
Confidence 98766544
No 4
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=97.90 E-value=0.0001 Score=73.16 Aligned_cols=133 Identities=12% Similarity=0.037 Sum_probs=79.2
Q ss_pred cceeeecCCcccccccccccCCCCCCCCCHHHHHHHHHHhcCCCCCCcEEEEEEeeeccCCCcccccc-c-cccc-----
Q 043315 318 RKNLMENTPITQHKIYVENSKSGEKPRPFVHSLITLLKAFNSSEMSPLCACVLHLVELVGRAAPLLVP-H-NTHK----- 390 (587)
Q Consensus 318 ril~c~~~~~~~~~v~~~~~~~~~~~~~~v~~li~Ll~~~~~~~~sp~~v~~lhlvel~~r~s~~l~~-~-~~~~----- 390 (587)
|||+| +...+ +-...+..+..+....+ ..++++|+++......+-... . ...+
T Consensus 2 ~ILv~---------vD~s~---------~s~~al~~A~~lA~~~~--a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (268)
T 3ab8_A 2 RILLA---------TDGSP---------QARGAEALAEWLAYKLS--APLTVLFVVDTRLARIPELLDFGALTVPVPVLR 61 (268)
T ss_dssp CEEEE---------CCSCG---------GGHHHHHHHHHHHHHHT--CCEEEEEEEEHHHHTHHHHC-------CHHHHH
T ss_pred cEEEE---------cCCCH---------HHHHHHHHHHHHHHHhC--CcEEEEEEeccCCcccccccCchHHHHHHHHHH
Confidence 68888 87766 66666666555542222 468999998754210000000 0 0000
Q ss_pred ---cccCCCchhHHHHHHHhhhcCCceEEEEEEEEecCCChHHHHHHHHhhcCCCEEEeccCCCc-cccc---cchhHHH
Q 043315 391 ---RKIKENSTDRIMRAMTKFSKSSQVTIQPFILIAPYKTMYESISKLAQDEFIPFIILPSHQSH-KMQQ---GGGFNCK 463 (587)
Q Consensus 391 ---~~~~~~~~~~i~~~f~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~~-~~~d---g~~~n~~ 463 (587)
........++.++.+.......++.++..... .+..+.|++. ++++|+|++|.|++. ...+ | .+-.+
T Consensus 62 ~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~---g~~~~~I~~~--~~~~dliV~G~~g~~~~~~~~~~G-s~~~~ 135 (268)
T 3ab8_A 62 TELERALALRGEAVLERVRQSALAAGVAVEAVLEE---GVPHEAILRR--ARAADLLVLGRSGEAHGDGFGGLG-STADR 135 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEE---ECHHHHHHHH--HTTCSEEEEESSCTTSCTTCCSCC-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEec---CCHHHHHHhh--ccCCCEEEEeccCCCccccccccc-hhHHH
Confidence 00001223445555544433445666665553 4678999998 889999999999765 4422 4 77899
Q ss_pred hhccCCCcEEEEE
Q 043315 464 IQNCAPCSVGIYV 476 (587)
Q Consensus 464 vl~~apcsVgIlv 476 (587)
+++++||+|-+.-
T Consensus 136 v~~~a~~PVlvv~ 148 (268)
T 3ab8_A 136 VLRASPVPVLLAP 148 (268)
T ss_dssp HHHHCSSCEEEEC
T ss_pred HHHhCCCCEEEEC
Confidence 9999999986654
No 5
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=97.86 E-value=0.00016 Score=72.71 Aligned_cols=117 Identities=10% Similarity=0.065 Sum_probs=79.0
Q ss_pred ccceeeecCCcccccccccccCCCCCCCCCHHHHHHHHHHhcCCCCCCcEEEEEEeeeccCCCccccccccccccccCCC
Q 043315 317 LRKNLMENTPITQHKIYVENSKSGEKPRPFVHSLITLLKAFNSSEMSPLCACVLHLVELVGRAAPLLVPHNTHKRKIKEN 396 (587)
Q Consensus 317 lril~c~~~~~~~~~v~~~~~~~~~~~~~~v~~li~Ll~~~~~~~~sp~~v~~lhlvel~~r~s~~l~~~~~~~~~~~~~ 396 (587)
-|||+| +...+ +-...+..+..+....+ ..++++|+++ + .+
T Consensus 8 ~~ILv~---------~D~s~---------~s~~al~~A~~la~~~~--a~l~ll~v~~-~---------~~--------- 48 (290)
T 3mt0_A 8 RSILVV---------IEPDQ---------LEGLALKRAQLIAGVTQ--SHLHLLVCEK-R---------RD--------- 48 (290)
T ss_dssp CEEEEE---------CCSSC---------SCCHHHHHHHHHHHHHC--CEEEEEEECS-S---------SC---------
T ss_pred ceEEEE---------eCCCc---------cchHHHHHHHHHHHhcC--CeEEEEEeeC-c---------HH---------
Confidence 369999 87766 55566665555543222 4689999986 1 11
Q ss_pred chhHHHHHHHhhhcCCceEEEEEEEEecCCChHHHHHHHHhhcCCCEEEeccCCCccccc---cchhHHHhhccCCCcEE
Q 043315 397 STDRIMRAMTKFSKSSQVTIQPFILIAPYKTMYESISKLAQDEFIPFIILPSHQSHKMQQ---GGGFNCKIQNCAPCSVG 473 (587)
Q Consensus 397 ~~~~i~~~f~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~~~~~d---g~~~n~~vl~~apcsVg 473 (587)
.++.++.+.......++.++...... .+..+.|++.|+++++|+||+|.|++..... | ..-.++++++||+|-
T Consensus 49 -~~~~l~~~~~~~~~~~~~~~~~~~~~--g~~~~~i~~~a~~~~~dliV~G~~~~~~~~~~~~g-s~~~~vl~~~~~PVl 124 (290)
T 3mt0_A 49 -HSAALNDLAQELREEGYSVSTNQAWK--DSLHQTIIAEQQAEGCGLIIKQHFPDNPLKKAILT-PDDWKLLRFAPCPVL 124 (290)
T ss_dssp -CHHHHHHHHHHHHHTTCCEEEEEECS--SSHHHHHHHHHHHHTCSEEEEECCCSCTTSTTSCC-HHHHHHHHHCSSCEE
T ss_pred -HHHHHHHHHHHHhhCCCeEEEEEEeC--CCHHHHHHHHHHhcCCCEEEEecccCCchhhcccC-HHHHHHHhcCCCCEE
Confidence 12233333322234456666665543 5789999999999999999999998765422 3 677899999999977
Q ss_pred EEE
Q 043315 474 IYV 476 (587)
Q Consensus 474 Ilv 476 (587)
+.-
T Consensus 125 vv~ 127 (290)
T 3mt0_A 125 MTK 127 (290)
T ss_dssp EEC
T ss_pred Eec
Confidence 765
No 6
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=97.85 E-value=2.3e-05 Score=70.19 Aligned_cols=133 Identities=9% Similarity=0.055 Sum_probs=81.4
Q ss_pred cceeeecCCcccccccccccCCCCCCCCCHHHHHHHHHHhcCCCCCCcEEEEEEeeeccCCCcccc--cccccccc--cc
Q 043315 318 RKNLMENTPITQHKIYVENSKSGEKPRPFVHSLITLLKAFNSSEMSPLCACVLHLVELVGRAAPLL--VPHNTHKR--KI 393 (587)
Q Consensus 318 ril~c~~~~~~~~~v~~~~~~~~~~~~~~v~~li~Ll~~~~~~~~sp~~v~~lhlvel~~r~s~~l--~~~~~~~~--~~ 393 (587)
|||+| +...+ +-...+..+..+.... ...++++|+++......... ......+. ..
T Consensus 4 ~ILv~---------vD~s~---------~s~~al~~A~~la~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (147)
T 3hgm_A 4 RIMVP---------VDGSK---------GAVKALEKGVGLQQLT--GAELYILCVFKHHSLLEASLSMARPEQLDIPDDA 63 (147)
T ss_dssp EEEEE---------CCSBH---------HHHHHHHHHHHHHHHH--CCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTH
T ss_pred eEEEE---------eCCCH---------HHHHHHHHHHHHHHhc--CCEEEEEEEecCcccccccccccChhhhhhHHHH
Confidence 58888 76666 5556666555443222 25789999988542100000 00000000 01
Q ss_pred CCCchhHHHHHHHhhhcCCceEE---EEEEEEecCCChHHHHHHHHhhcCCCEEEeccCCCccccc---cchhHHHhhcc
Q 043315 394 KENSTDRIMRAMTKFSKSSQVTI---QPFILIAPYKTMYESISKLAQDEFIPFIILPSHQSHKMQQ---GGGFNCKIQNC 467 (587)
Q Consensus 394 ~~~~~~~i~~~f~~~~~~~~v~v---~~~~~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~~~~~d---g~~~n~~vl~~ 467 (587)
.....++.++.+.......++.+ +..... .+..+.|++.|++.++|+|++|.|++....+ | .+-++|+++
T Consensus 64 ~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~G-s~~~~vl~~ 139 (147)
T 3hgm_A 64 LKDYATEIAVQAKTRATELGVPADKVRAFVKG---GRPSRTIVRFARKRECDLVVIGAQGTNGDKSLLLG-SVAQRVAGS 139 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEE---SCHHHHHHHHHHHTTCSEEEECSSCTTCCSCCCCC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccceEEEEec---CCHHHHHHHHHHHhCCCEEEEeCCCCccccceeec-cHHHHHHhh
Confidence 11234555665555533445554 544443 4789999999999999999999998765522 3 788999999
Q ss_pred CCCcEEE
Q 043315 468 APCSVGI 474 (587)
Q Consensus 468 apcsVgI 474 (587)
+||+|-|
T Consensus 140 ~~~pVlv 146 (147)
T 3hgm_A 140 AHCPVLV 146 (147)
T ss_dssp CSSCEEE
T ss_pred CCCCEEE
Confidence 9999765
No 7
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=97.80 E-value=5.4e-05 Score=69.22 Aligned_cols=126 Identities=10% Similarity=0.023 Sum_probs=82.7
Q ss_pred ccceeeecCCcccccccc-cccCCCCCCCCCHHHHHHHHHHhcCCCCCCcEEEEEEeeeccCCCccccccccccccccCC
Q 043315 317 LRKNLMENTPITQHKIYV-ENSKSGEKPRPFVHSLITLLKAFNSSEMSPLCACVLHLVELVGRAAPLLVPHNTHKRKIKE 395 (587)
Q Consensus 317 lril~c~~~~~~~~~v~~-~~~~~~~~~~~~v~~li~Ll~~~~~~~~sp~~v~~lhlvel~~r~s~~l~~~~~~~~~~~~ 395 (587)
-|||+| +.. .+ +-...+..+..+....+ ..++++|+++..+... .+ ..
T Consensus 25 ~~ILv~---------vD~~s~---------~s~~al~~A~~la~~~~--a~l~llhV~~~~~~~~-----~~------~~ 73 (155)
T 3dlo_A 25 MPIVVA---------VDKKSD---------RAERVLRFAAEEARLRG--VPVYVVHSLPGGGRTK-----DE------DI 73 (155)
T ss_dssp CCEEEE---------CCSSSH---------HHHHHHHHHHHHHHHHT--CCEEEEEEECCSTTSC-----HH------HH
T ss_pred CeEEEE---------ECCCCH---------HHHHHHHHHHHHHHhcC--CEEEEEEEEcCCCccc-----HH------HH
Confidence 479999 877 56 66666666655543222 4689999988542210 00 11
Q ss_pred CchhHHHHHHHhhhcCCceEEEEEEEEecCCChHHHHHHHHhhcCCCEEEeccCCCccccc---cchhHHHhhccCCCcE
Q 043315 396 NSTDRIMRAMTKFSKSSQVTIQPFILIAPYKTMYESISKLAQDEFIPFIILPSHQSHKMQQ---GGGFNCKIQNCAPCSV 472 (587)
Q Consensus 396 ~~~~~i~~~f~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~~~~~d---g~~~n~~vl~~apcsV 472 (587)
...++.++.+.......++.++..+.+. ..+..+.|++.|++.++|+||++.|++....+ | .+-++|++++||+|
T Consensus 74 ~~~~~~l~~~~~~~~~~g~~~~~~~~v~-~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lG-Sv~~~vl~~a~~PV 151 (155)
T 3dlo_A 74 IEAKETLSWAVSIIRKEGAEGEEHLLVR-GKEPPDDIVDFADEVDAIAIVIGIRKRSPTGKLIFG-SVARDVILKANKPV 151 (155)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEEES-SSCHHHHHHHHHHHTTCSEEEEECCEECTTSCEECC-HHHHHHHHHCSSCE
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEEEec-CCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCEEec-cHHHHHHHhCCCCE
Confidence 2234555555544334445555544442 25789999999999999999999987765522 4 78899999999997
Q ss_pred EEE
Q 043315 473 GIY 475 (587)
Q Consensus 473 gIl 475 (587)
-|+
T Consensus 152 LvV 154 (155)
T 3dlo_A 152 ICI 154 (155)
T ss_dssp EEE
T ss_pred EEe
Confidence 664
No 8
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=97.79 E-value=0.00013 Score=66.47 Aligned_cols=135 Identities=16% Similarity=0.179 Sum_probs=84.0
Q ss_pred cceeeecCCcccccccccccCCCCCCCCCHHHHHHHHHHhcCCCCCCcEEEEEEeeeccC----CCcccc-----c-ccc
Q 043315 318 RKNLMENTPITQHKIYVENSKSGEKPRPFVHSLITLLKAFNSSEMSPLCACVLHLVELVG----RAAPLL-----V-PHN 387 (587)
Q Consensus 318 ril~c~~~~~~~~~v~~~~~~~~~~~~~~v~~li~Ll~~~~~~~~sp~~v~~lhlvel~~----r~s~~l-----~-~~~ 387 (587)
|||+| +...+ +-...+..+..+... ....++++|+++... .....- . +..
T Consensus 7 ~ILv~---------vD~s~---------~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (162)
T 1mjh_A 7 KILYP---------TDFSE---------TAEIALKHVKAFKTL--KAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSV 66 (162)
T ss_dssp EEEEE---------CCSCH---------HHHHHHHHHHHTCCS--SCCEEEEEEEEEGGGTC-----------------C
T ss_pred eEEEE---------eCCCH---------HHHHHHHHHHHHHhh--cCCeEEEEEEecCccccccccccccccccccccch
Confidence 69999 87777 667777777766543 346899999987530 000000 0 000
Q ss_pred ---cccc-ccCCCchhHHHHHHHhhhcCCceEEEEEEEEecCCChHHHHHHHHhhcCCCEEEeccCCCccccc---cchh
Q 043315 388 ---THKR-KIKENSTDRIMRAMTKFSKSSQVTIQPFILIAPYKTMYESISKLAQDEFIPFIILPSHQSHKMQQ---GGGF 460 (587)
Q Consensus 388 ---~~~~-~~~~~~~~~i~~~f~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~~~~~d---g~~~ 460 (587)
..+- .......++.++.+.......++.++..+.. .+..+.|++.|+++++|+|++|.|++..... | .+
T Consensus 67 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~v~~---G~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~~G-Sv 142 (162)
T 1mjh_A 67 EEFENELKNKLTEEAKNKMENIKKELEDVGFKVKDIIVV---GIPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLG-SV 142 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEE---ECHHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSC-HH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEEcC---CCHHHHHHHHHHHcCCCEEEEcCCCCCCccceEec-ch
Confidence 0000 0011123344444443333455677665544 4679999999999999999999998765522 4 78
Q ss_pred HHHhhccCCCcEEEEE
Q 043315 461 NCKIQNCAPCSVGIYV 476 (587)
Q Consensus 461 n~~vl~~apcsVgIlv 476 (587)
-++|++++||+|-|+-
T Consensus 143 ~~~vl~~~~~pVlvv~ 158 (162)
T 1mjh_A 143 TENVIKKSNKPVLVVK 158 (162)
T ss_dssp HHHHHHHCCSCEEEEC
T ss_pred HHHHHHhCCCCEEEEe
Confidence 8999999999977663
No 9
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=97.76 E-value=0.00011 Score=67.73 Aligned_cols=133 Identities=8% Similarity=0.018 Sum_probs=82.4
Q ss_pred ccceeeecCCcccccccccccCCCCCCCCCHHHHHHHHHHhcCCCCCCcEEEEE--EeeeccCCCccccc-ccccccccc
Q 043315 317 LRKNLMENTPITQHKIYVENSKSGEKPRPFVHSLITLLKAFNSSEMSPLCACVL--HLVELVGRAAPLLV-PHNTHKRKI 393 (587)
Q Consensus 317 lril~c~~~~~~~~~v~~~~~~~~~~~~~~v~~li~Ll~~~~~~~~sp~~v~~l--hlvel~~r~s~~l~-~~~~~~~~~ 393 (587)
-|||+| +...+ +-...+..+..+.. .+ ..++++ |+++......+.-. ..+.. ..
T Consensus 18 ~~ILv~---------vD~s~---------~s~~al~~A~~lA~-~~--a~l~ll~a~v~~~~~~~~~~~~~~~~~~--~~ 74 (163)
T 1tq8_A 18 KTVVVG---------TDGSD---------SSMRAVDRAAQIAG-AD--AKLIIASAYLPQHEDARAADILKDESYK--VT 74 (163)
T ss_dssp CEEEEE---------CCSSH---------HHHHHHHHHHHHHT-TT--SEEEEEEECCC---------------------
T ss_pred CEEEEE---------cCCCH---------HHHHHHHHHHHHhC-CC--CEEEEEEeeeccCcccccccccccHHHH--HH
Confidence 579999 87766 66667776666653 33 578899 88764421011000 00000 01
Q ss_pred CCCchhHHHHHHHhhhcCCceE-EEEEEEEecCCChHHHHHHHHhhcCCCEEEeccCCCccccc---cchhHHHhhccCC
Q 043315 394 KENSTDRIMRAMTKFSKSSQVT-IQPFILIAPYKTMYESISKLAQDEFIPFIILPSHQSHKMQQ---GGGFNCKIQNCAP 469 (587)
Q Consensus 394 ~~~~~~~i~~~f~~~~~~~~v~-v~~~~~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~~~~~d---g~~~n~~vl~~ap 469 (587)
.....++.++.+.......++. ++..+.. .+..+.|++.|++.++|+|+++.|++..... | .+-++|++++|
T Consensus 75 ~~~~~~~~l~~~~~~~~~~gv~~v~~~v~~---G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lG-Sva~~vl~~a~ 150 (163)
T 1tq8_A 75 GTAPIYEILHDAKERAHNAGAKNVEERPIV---GAPVDALVNLADEEKADLLVVGNVGLSTIAGRLLG-SVPANVSRRAK 150 (163)
T ss_dssp -CCTHHHHHHHHHHHHHTTTCCEEEEEEEC---SSHHHHHHHHHHHTTCSEEEEECCCCCSHHHHHTB-BHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCeEEEEEec---CCHHHHHHHHHHhcCCCEEEECCCCCCcccceeec-cHHHHHHHhCC
Confidence 2234456666555544444565 6665543 5779999999999999999999997765422 4 77899999999
Q ss_pred CcEEEEE
Q 043315 470 CSVGIYV 476 (587)
Q Consensus 470 csVgIlv 476 (587)
|+|-|+-
T Consensus 151 ~PVlvV~ 157 (163)
T 1tq8_A 151 VDVLIVH 157 (163)
T ss_dssp CEEEEEC
T ss_pred CCEEEEe
Confidence 9977663
No 10
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=97.75 E-value=3.3e-05 Score=70.24 Aligned_cols=134 Identities=9% Similarity=0.081 Sum_probs=81.8
Q ss_pred ccceeeecCCccccccc--ccccCCCCCCCCCHHHHHHHHHHhcCCCCCCcEEEEEEeeeccCCCccccccccccccccC
Q 043315 317 LRKNLMENTPITQHKIY--VENSKSGEKPRPFVHSLITLLKAFNSSEMSPLCACVLHLVELVGRAAPLLVPHNTHKRKIK 394 (587)
Q Consensus 317 lril~c~~~~~~~~~v~--~~~~~~~~~~~~~v~~li~Ll~~~~~~~~sp~~v~~lhlvel~~r~s~~l~~~~~~~~~~~ 394 (587)
-|||+| +. ..+ +-...+..+..+.... ...++++|+++............+.. ...
T Consensus 16 ~~ILv~---------vD~~~s~---------~s~~al~~a~~la~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~--~~~ 73 (156)
T 3fg9_A 16 RRILLT---------VDEDDNT---------SSERAFRYATTLAHDY--DVPLGICSVLESEDINIFDSLTPSKI--QAK 73 (156)
T ss_dssp C-EEEE---------CCSCCCH---------HHHHHHHHHHHHHHHH--TCCEEEEEEECCCCTTCCCSSHHHHH--HHH
T ss_pred ceEEEE---------ECCCCCH---------HHHHHHHHHHHHHHhc--CCEEEEEEEEeCCCccccccCCHHHH--HHH
Confidence 479999 88 666 6666666655443221 24689999988653211000000000 011
Q ss_pred CCchhHHHHHHHhhhcCCce-EEEEEEEEecCCChHHHHHHH-HhhcCCCEEEeccCCCcccc--ccchhHHHhhccCCC
Q 043315 395 ENSTDRIMRAMTKFSKSSQV-TIQPFILIAPYKTMYESISKL-AQDEFIPFIILPSHQSHKMQ--QGGGFNCKIQNCAPC 470 (587)
Q Consensus 395 ~~~~~~i~~~f~~~~~~~~v-~v~~~~~vs~~~~m~~dI~~~-A~e~~~~lIilp~h~~~~~~--dg~~~n~~vl~~apc 470 (587)
....++.++.+.......++ .++.....+ .+..+.|++. |++.++|+|++|.|++.... -| .+-++|++++||
T Consensus 74 ~~~~~~~l~~~~~~~~~~g~~~~~~~v~~~--g~~~~~I~~~~a~~~~~DlIV~G~~g~~~~~~~~G-s~~~~vl~~a~~ 150 (156)
T 3fg9_A 74 RKHVEDVVAEYVQLAEQRGVNQVEPLVYEG--GDVDDVILEQVIPEFKPDLLVTGADTEFPHSKIAG-AIGPRLARKAPI 150 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSEEEEEEEC--SCHHHHHHHTHHHHHCCSEEEEETTCCCTTSSSCS-CHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHHcCCCceEEEEEeC--CCHHHHHHHHHHHhcCCCEEEECCCCCCccceeec-chHHHHHHhCCC
Confidence 12344555555444333344 355555552 4778999999 99999999999999776552 14 777999999999
Q ss_pred cEEEE
Q 043315 471 SVGIY 475 (587)
Q Consensus 471 sVgIl 475 (587)
+|-|+
T Consensus 151 PVlvV 155 (156)
T 3fg9_A 151 SVIVV 155 (156)
T ss_dssp EEEEE
T ss_pred CEEEe
Confidence 97654
No 11
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=97.72 E-value=0.00011 Score=67.65 Aligned_cols=135 Identities=13% Similarity=0.096 Sum_probs=81.1
Q ss_pred cceeeecCCcccccccccccCCCCCCCCCHHHHHHHHHHhcCCCCCCcEEEEEEeeeccCCCccc-ccc-------cccc
Q 043315 318 RKNLMENTPITQHKIYVENSKSGEKPRPFVHSLITLLKAFNSSEMSPLCACVLHLVELVGRAAPL-LVP-------HNTH 389 (587)
Q Consensus 318 ril~c~~~~~~~~~v~~~~~~~~~~~~~~v~~li~Ll~~~~~~~~sp~~v~~lhlvel~~r~s~~-l~~-------~~~~ 389 (587)
|||+| +...+ +-...+..+..+... ....++++|+++........ -.. ....
T Consensus 7 ~ILv~---------vD~s~---------~s~~al~~A~~la~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (170)
T 2dum_A 7 KVLFP---------TDFSE---------GAYRAVEVFEKRNKM--EVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELK 66 (170)
T ss_dssp EEEEE---------CCSSH---------HHHHHHHHHHHHCCS--CCSEEEEEEEEETTGGGCCC------------CCT
T ss_pred eEEEE---------ecCCH---------HHHHHHHHHHHHHHh--cCCEEEEEEEecCccccccccccccccccccccHH
Confidence 68999 87777 667777777777643 33679999998743211000 000 0000
Q ss_pred cc-ccCCCchhHHHHHHHhhhcCCceEEEE--EEEEecCCChHHHHHHHHhhcCCCEEEeccCCCccccc---cchhHHH
Q 043315 390 KR-KIKENSTDRIMRAMTKFSKSSQVTIQP--FILIAPYKTMYESISKLAQDEFIPFIILPSHQSHKMQQ---GGGFNCK 463 (587)
Q Consensus 390 ~~-~~~~~~~~~i~~~f~~~~~~~~v~v~~--~~~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~~~~~d---g~~~n~~ 463 (587)
+- .......++.++.+.......++.++. .... .+..+.|++.|+++++|+||+|.|++....+ | .+-++
T Consensus 67 ~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~---g~~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~~~G-sv~~~ 142 (170)
T 2dum_A 67 DIKEKLKEEASRKLQEKAEEVKRAFRAKNVRTIIRF---GIPWDEIVKVAEEENVSLIILPSRGKLSLSHEFLG-STVMR 142 (170)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEE---ECHHHHHHHHHHHTTCSEEEEESCCCCC--TTCCC-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCceeeeeEEec---CChHHHHHHHHHHcCCCEEEECCCCCCccccceec-hHHHH
Confidence 00 001112334444443332222444444 3333 4678999999999999999999997765422 3 78899
Q ss_pred hhccCCCcEEEEE
Q 043315 464 IQNCAPCSVGIYV 476 (587)
Q Consensus 464 vl~~apcsVgIlv 476 (587)
|++++||+|-|+-
T Consensus 143 vl~~~~~PVlvv~ 155 (170)
T 2dum_A 143 VLRKTKKPVLIIK 155 (170)
T ss_dssp HHHHCSSCEEEEC
T ss_pred HHHhCCCCEEEEc
Confidence 9999999977764
No 12
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=97.71 E-value=5.4e-05 Score=67.44 Aligned_cols=105 Identities=14% Similarity=0.129 Sum_probs=62.3
Q ss_pred cEEEEEEeeeccCCCccccccccccccccCCCchhHHHHHHHhhhcCC---ceEEEEEEEEecCCChHHHHHHHHhhcCC
Q 043315 365 LCACVLHLVELVGRAAPLLVPHNTHKRKIKENSTDRIMRAMTKFSKSS---QVTIQPFILIAPYKTMYESISKLAQDEFI 441 (587)
Q Consensus 365 ~~v~~lhlvel~~r~s~~l~~~~~~~~~~~~~~~~~i~~~f~~~~~~~---~v~v~~~~~vs~~~~m~~dI~~~A~e~~~ 441 (587)
..++++|+++............... ........++..+.++.+.... .+.++..... .+..+.|++.|+++++
T Consensus 32 a~l~ll~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~---g~~~~~I~~~a~~~~~ 107 (143)
T 3fdx_A 32 AEVHFLTVIPSLPYYASLGMAYTAE-LPGMDELREGSETQLKEIAKKFSIPEDRMHFHVAE---GSPKDKILALAKSLPA 107 (143)
T ss_dssp CEEEEEEEECC-----------------CHHHHHHHHHHHHHHHHTTSCCCGGGEEEEEEE---SCHHHHHHHHHHHTTC
T ss_pred CeEEEEEEecCCcccccccccccch-hhhHHHHHHHHHHHHHHHHHHcCCCCCceEEEEEe---cChHHHHHHHHHHhCC
Confidence 5789999988643221110000000 0001122345555566663322 3445555544 4789999999999999
Q ss_pred CEEEeccCCCccccc---cchhHHHhhccCCCcEEEE
Q 043315 442 PFIILPSHQSHKMQQ---GGGFNCKIQNCAPCSVGIY 475 (587)
Q Consensus 442 ~lIilp~h~~~~~~d---g~~~n~~vl~~apcsVgIl 475 (587)
|+|+++.|+ ....+ | .+-++|++++||+|-|+
T Consensus 108 dliV~G~~~-~~~~~~~~G-s~~~~v~~~~~~pVlvv 142 (143)
T 3fdx_A 108 DLVIIASHR-PDITTYLLG-SNAAAVVRHAECSVLVV 142 (143)
T ss_dssp SEEEEESSC-TTCCSCSSC-HHHHHHHHHCSSEEEEE
T ss_pred CEEEEeCCC-CCCeeeeec-cHHHHHHHhCCCCEEEe
Confidence 999999995 33312 3 78899999999997654
No 13
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=97.70 E-value=0.00014 Score=73.94 Aligned_cols=133 Identities=12% Similarity=0.110 Sum_probs=79.4
Q ss_pred ccceeeecCCcccccccccccCCCCCCCCCHHHHHHHHHHhcCCCCCCcEEEEEEeeeccCCCc-cc-cccccccccccC
Q 043315 317 LRKNLMENTPITQHKIYVENSKSGEKPRPFVHSLITLLKAFNSSEMSPLCACVLHLVELVGRAA-PL-LVPHNTHKRKIK 394 (587)
Q Consensus 317 lril~c~~~~~~~~~v~~~~~~~~~~~~~~v~~li~Ll~~~~~~~~sp~~v~~lhlvel~~r~s-~~-l~~~~~~~~~~~ 394 (587)
-|||+| +...+ +-...+..+..+....+ ..++++|+++ +.... +. ....+.. ...
T Consensus 20 ~~ILv~---------~D~s~---------~s~~al~~A~~lA~~~~--a~l~ll~v~~-~~~~~~~~~~~~~~~~--~~~ 76 (309)
T 3cis_A 20 LGIIVG---------IDDSP---------AAQVAVRWAARDAELRK--IPLTLVHAVS-PEVATWLEVPLPPGVL--RWQ 76 (309)
T ss_dssp TEEEEE---------CCSSH---------HHHHHHHHHHHHHHHHT--CCEEEEEECC-CCCCCTTCCCCCHHHH--HHH
T ss_pred CeEEEE---------ECCCH---------HHHHHHHHHHHHHHhcC--CcEEEEEEec-CcccccccCCCCchhh--HHH
Confidence 579999 88776 66666666555442222 4689999987 22111 00 0000000 001
Q ss_pred CCchhHHHHHHHhh-hc----CCceEEEEEEEEecCCChHHHHHHHHhhcCCCEEEeccCCCccccc---cchhHHHhhc
Q 043315 395 ENSTDRIMRAMTKF-SK----SSQVTIQPFILIAPYKTMYESISKLAQDEFIPFIILPSHQSHKMQQ---GGGFNCKIQN 466 (587)
Q Consensus 395 ~~~~~~i~~~f~~~-~~----~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~~~~~d---g~~~n~~vl~ 466 (587)
....++.++.+... .. ..++.++..... .+..+.|++.|+ ++|+||++.|++..... | .+-.++++
T Consensus 77 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~~I~~~a~--~~DliV~G~~g~~~~~~~~~G-s~~~~vl~ 150 (309)
T 3cis_A 77 QDHGRHLIDDALKVVEQASLRAGPPTVHSEIVP---AAAVPTLVDMSK--DAVLMVVGCLGSGRWPGRLLG-SVSSGLLR 150 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSSCCSCEEEEEES---SCHHHHHHHHGG--GEEEEEEESSCTTCCTTCCSC-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCceEEEEEec---CCHHHHHHHHhc--CCCEEEECCCCCccccccccC-cHHHHHHH
Confidence 12233444433332 11 125666665443 578999999996 89999999997755422 4 77789999
Q ss_pred cCCCcEEEEEeC
Q 043315 467 CAPCSVGIYVDR 478 (587)
Q Consensus 467 ~apcsVgIlvdR 478 (587)
++||+|-|+-.+
T Consensus 151 ~~~~PVlvv~~~ 162 (309)
T 3cis_A 151 HAHCPVVIIHDE 162 (309)
T ss_dssp HCSSCEEEECTT
T ss_pred hCCCCEEEEcCC
Confidence 999998776543
No 14
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=97.61 E-value=0.00011 Score=66.16 Aligned_cols=136 Identities=12% Similarity=0.149 Sum_probs=73.3
Q ss_pred ccceeeecCCcccccccccccCCCCCCCCCHHHHHHHHHHhcCCCCCCcEEEEEEeeeccCCCccccccccccc-cccCC
Q 043315 317 LRKNLMENTPITQHKIYVENSKSGEKPRPFVHSLITLLKAFNSSEMSPLCACVLHLVELVGRAAPLLVPHNTHK-RKIKE 395 (587)
Q Consensus 317 lril~c~~~~~~~~~v~~~~~~~~~~~~~~v~~li~Ll~~~~~~~~sp~~v~~lhlvel~~r~s~~l~~~~~~~-~~~~~ 395 (587)
-|||+| +...+ +-...+..+..+.... ...++++|+++......+......... .....
T Consensus 7 ~~ILv~---------vD~s~---------~s~~al~~a~~la~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~ 66 (150)
T 3tnj_A 7 HHILLA---------VDFSS---------EDSQVVQKVRNLASQI--GARLSLIHVLDNIPMPDTPYGTAIPLDTETTYD 66 (150)
T ss_dssp SEEEEE---------CCCST---------THHHHHHHHHHHHHHH--TCEEEEEEEEC--------CTTCCCSSSCCCHH
T ss_pred ceEEEE---------eCCCH---------HHHHHHHHHHHHHhhc--CCEEEEEEEEcCccccccccccccCcCHHHHHH
Confidence 368999 87777 7777777666554322 257899999875322100000000000 00000
Q ss_pred CchhHHHHHHHhhhcCCceE-EEEEEEEecCCChHHHHHHHHhhcCCCEEEeccCCCcccc--ccchhHHHhhccCCCcE
Q 043315 396 NSTDRIMRAMTKFSKSSQVT-IQPFILIAPYKTMYESISKLAQDEFIPFIILPSHQSHKMQ--QGGGFNCKIQNCAPCSV 472 (587)
Q Consensus 396 ~~~~~i~~~f~~~~~~~~v~-v~~~~~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~~~~~--dg~~~n~~vl~~apcsV 472 (587)
...++.-+.++.+....++. ++..... .+..+.|++.|+++++|+|++|.|++.... -| .+-++|++++||+|
T Consensus 67 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~G-s~~~~vl~~~~~pV 142 (150)
T 3tnj_A 67 AMLDVEKQKLSQIGNTLGIDPAHRWLVW---GEPREEIIRIAEQENVDLIVVGSHGRHGLALLLG-STANSVLHYAKCDV 142 (150)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGEEEEE---SCHHHHHHHHHHHTTCSEEEEEEC--------CC-CHHHHHHHHCSSEE
T ss_pred HHHHHHHHHHHHHHHHcCCCcceEEEec---CCHHHHHHHHHHHcCCCEEEEecCCCCCcCeEec-chHHHHHHhCCCCE
Confidence 11122223333332221222 2222222 577899999999999999999999776542 13 77889999999997
Q ss_pred EEEE
Q 043315 473 GIYV 476 (587)
Q Consensus 473 gIlv 476 (587)
-|+-
T Consensus 143 lvv~ 146 (150)
T 3tnj_A 143 LAVR 146 (150)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7664
No 15
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=97.59 E-value=0.00012 Score=64.86 Aligned_cols=129 Identities=15% Similarity=0.102 Sum_probs=73.7
Q ss_pred cceeeecCCcccccccccccCCCCCCCCCHHHHHHHHHHhcCCCCCCcEEEEEEeeeccCCCccccccccccccccCCCc
Q 043315 318 RKNLMENTPITQHKIYVENSKSGEKPRPFVHSLITLLKAFNSSEMSPLCACVLHLVELVGRAAPLLVPHNTHKRKIKENS 397 (587)
Q Consensus 318 ril~c~~~~~~~~~v~~~~~~~~~~~~~~v~~li~Ll~~~~~~~~sp~~v~~lhlvel~~r~s~~l~~~~~~~~~~~~~~ 397 (587)
|||+| +...+ +-...+..+..+... ....++++|+++-......-..+.+.. ......
T Consensus 4 ~ILv~---------~D~s~---------~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~--~~~~~~ 61 (137)
T 2z08_A 4 TILLA---------YDGSE---------HARRAAEVAKAEAEA--HGARLIVVHAYEPVPDYLGEPFFEEAL--RRRLER 61 (137)
T ss_dssp EEEEE---------CCSSH---------HHHHHHHHHHHHHHH--HTCEEEEEEEECC----------------CHHHHH
T ss_pred eEEEE---------eCCCH---------HHHHHHHHHHHHHhh--cCCEEEEEEEecCCCccccccchHHHH--HHHHHH
Confidence 68888 77666 555566555544422 125789999987321100000000000 000112
Q ss_pred hhHHHHHHHhhhcCCce-EEEEEEEEecCCChHHHHHHHHhhcCCCEEEeccCCCccccc---cchhHHHhhccCCCcEE
Q 043315 398 TDRIMRAMTKFSKSSQV-TIQPFILIAPYKTMYESISKLAQDEFIPFIILPSHQSHKMQQ---GGGFNCKIQNCAPCSVG 473 (587)
Q Consensus 398 ~~~i~~~f~~~~~~~~v-~v~~~~~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~~~~~d---g~~~n~~vl~~apcsVg 473 (587)
.++.++.+.. ..++ .++..... .+..+.|++.|+++++|+|++|.|++..... | .+-++|++++||+|-
T Consensus 62 ~~~~l~~~~~---~~g~~~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~G-s~~~~vl~~~~~pVl 134 (137)
T 2z08_A 62 AEGVLEEARA---LTGVPKEDALLLE---GVPAEAILQAARAEKADLIVMGTRGLGALGSLFLG-SQSQRVVAEAPCPVL 134 (137)
T ss_dssp HHHHHHHHHH---HHCCCGGGEEEEE---SSHHHHHHHHHHHTTCSEEEEESSCTTCCSCSSSC-HHHHHHHHHCSSCEE
T ss_pred HHHHHHHHHH---HcCCCccEEEEEe---cCHHHHHHHHHHHcCCCEEEECCCCCchhhhhhhc-cHHHHHHhcCCCCEE
Confidence 2333333222 1233 33333332 5789999999999999999999998765422 4 788999999999976
Q ss_pred EE
Q 043315 474 IY 475 (587)
Q Consensus 474 Il 475 (587)
|+
T Consensus 135 vv 136 (137)
T 2z08_A 135 LV 136 (137)
T ss_dssp EE
T ss_pred Ee
Confidence 64
No 16
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=97.57 E-value=0.00013 Score=64.64 Aligned_cols=130 Identities=11% Similarity=0.060 Sum_probs=83.9
Q ss_pred cceeeecCCcccccccccccCCCCCCCCCHHHHHHHHHHhc-CCCCCCcEEEEEEeeeccCCCcccc-ccccccccccCC
Q 043315 318 RKNLMENTPITQHKIYVENSKSGEKPRPFVHSLITLLKAFN-SSEMSPLCACVLHLVELVGRAAPLL-VPHNTHKRKIKE 395 (587)
Q Consensus 318 ril~c~~~~~~~~~v~~~~~~~~~~~~~~v~~li~Ll~~~~-~~~~sp~~v~~lhlvel~~r~s~~l-~~~~~~~~~~~~ 395 (587)
|||+| +...+ +-...+..+..+. .. ....++++|+++......... ...+.. ....
T Consensus 3 ~ILv~---------~D~s~---------~s~~al~~a~~la~~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~~--~~~~ 60 (138)
T 3idf_A 3 KLLFA---------IDDTE---------ACERAAQYILDMFGKD--ADCTLTLIHVKPEFMLYGEAVLAAYDEI--EMKE 60 (138)
T ss_dssp EEEEE---------CCSSH---------HHHHHHHHHHHHHTTC--TTEEEEEEEEECCCCCCHHHHHHHHHHH--HHHH
T ss_pred eEEEE---------eCCCH---------HHHHHHHHHHHHhccC--CCCEEEEEEEecCCCcccccccCcHHHH--HHHH
Confidence 58888 77766 6777777776665 33 347899999988653221100 000000 0111
Q ss_pred -CchhHHHHHHHhhhcCCceEEEEEEEEecCCChHHHHHHHHhhcCCCEEEeccCCCccccc--cchhHHHhhccCCCcE
Q 043315 396 -NSTDRIMRAMTKFSKSSQVTIQPFILIAPYKTMYESISKLAQDEFIPFIILPSHQSHKMQQ--GGGFNCKIQNCAPCSV 472 (587)
Q Consensus 396 -~~~~~i~~~f~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~~~~~d--g~~~n~~vl~~apcsV 472 (587)
...++.++.+.......++.++..... .+..+.|++.|+ ++|+|++|.|++..... | .+-++|++++||+|
T Consensus 61 ~~~~~~~l~~~~~~~~~~g~~~~~~v~~---g~~~~~I~~~a~--~~dliV~G~~~~~~~~~~~G-s~~~~vl~~~~~pV 134 (138)
T 3idf_A 61 EEKAKLLTQKFSTFFTEKGINPFVVIKE---GEPVEMVLEEAK--DYNLLIIGSSENSFLNKIFA-SHQDDFIQKAPIPV 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCEEEEEE---SCHHHHHHHHHT--TCSEEEEECCTTSTTSSCCC-CTTCHHHHHCSSCE
T ss_pred HHHHHHHHHHHHHHHHHCCCCeEEEEec---CChHHHHHHHHh--cCCEEEEeCCCcchHHHHhC-cHHHHHHhcCCCCE
Confidence 334555665555544556676655554 468999999999 99999999997755422 5 67789999999997
Q ss_pred EEE
Q 043315 473 GIY 475 (587)
Q Consensus 473 gIl 475 (587)
-|+
T Consensus 135 lvv 137 (138)
T 3idf_A 135 LIV 137 (138)
T ss_dssp EEE
T ss_pred EEe
Confidence 654
No 17
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=97.37 E-value=0.00031 Score=62.31 Aligned_cols=132 Identities=8% Similarity=0.024 Sum_probs=75.4
Q ss_pred cceeeecCCcccccccccccCCCCCCCCCHHHHHHHHHHhcCCCCCCcEEEEEEeeec-cCCCccccccccccc-cccCC
Q 043315 318 RKNLMENTPITQHKIYVENSKSGEKPRPFVHSLITLLKAFNSSEMSPLCACVLHLVEL-VGRAAPLLVPHNTHK-RKIKE 395 (587)
Q Consensus 318 ril~c~~~~~~~~~v~~~~~~~~~~~~~~v~~li~Ll~~~~~~~~sp~~v~~lhlvel-~~r~s~~l~~~~~~~-~~~~~ 395 (587)
|||+| +...+ +-...+..+..+... ....++++|+++- +...... ......+ .....
T Consensus 4 ~ILv~---------~D~s~---------~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~~~-~~~~~~~~~~~~~ 62 (141)
T 1jmv_A 4 HILVA---------VDLSE---------ESPILLKKAVGIAKR--HDAKLSIIHVDVNFSDLYTGL-IDVNMSSMQDRIS 62 (141)
T ss_dssp EEEEE---------ECCST---------THHHHHHHHHHHHHH--HTCEEEEEEEEECCGGGCCCC-EEHHHHHHTTCCC
T ss_pred eEEEE---------ecCch---------hhHHHHHHHHHHHHh--cCCEEEEEEEecCchhhhccc-cccchHHHHHHHH
Confidence 68888 77766 666666665555422 2257899999842 2111110 0000000 00111
Q ss_pred CchhHHHHHHHhhhcCCceEE-EEEEEEecCCChHHHHHHHHhhcCCCEEEeccCCCccccc-cchhHHHhhccCCCcEE
Q 043315 396 NSTDRIMRAMTKFSKSSQVTI-QPFILIAPYKTMYESISKLAQDEFIPFIILPSHQSHKMQQ-GGGFNCKIQNCAPCSVG 473 (587)
Q Consensus 396 ~~~~~i~~~f~~~~~~~~v~v-~~~~~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~~~~~d-g~~~n~~vl~~apcsVg 473 (587)
...++.++. +....++.+ +..... .+..+.|++.|++.++|+|++|.| +..... | .+-++|++++||+|-
T Consensus 63 ~~~~~~l~~---~~~~~~~~~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~-~~~~~~lg-s~~~~vl~~~~~pVl 134 (141)
T 1jmv_A 63 TETQKALLD---LAESVDYPISEKLSGS---GDLGQVLSDAIEQYDVDLLVTGHH-QDFWSKLM-SSTRQVMNTIKIDML 134 (141)
T ss_dssp CHHHHHHHH---HHHHSSSCCCCEEEEE---ECHHHHHHHHHHHTTCCEEEEEEC-CCCHHHHH-HHHHHHHTTCCSEEE
T ss_pred HHHHHHHHH---HHHHcCCCceEEEEec---CCHHHHHHHHHHhcCCCEEEEeCC-Cchhhhhc-chHHHHHhcCCCCEE
Confidence 223333333 322223333 222322 467899999999999999999998 544311 4 777899999999987
Q ss_pred EEEeC
Q 043315 474 IYVDR 478 (587)
Q Consensus 474 IlvdR 478 (587)
|+-.+
T Consensus 135 vv~~~ 139 (141)
T 1jmv_A 135 VVPLR 139 (141)
T ss_dssp EEECC
T ss_pred EeeCC
Confidence 77543
No 18
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=97.12 E-value=0.00057 Score=69.41 Aligned_cols=138 Identities=12% Similarity=0.074 Sum_probs=82.2
Q ss_pred ccceeeecCCcccccccccccCCCCCCCCCHHHHHHHHHHhcCCCCCCcEEEEEEeeeccCCC-cccccccccccc--cc
Q 043315 317 LRKNLMENTPITQHKIYVENSKSGEKPRPFVHSLITLLKAFNSSEMSPLCACVLHLVELVGRA-APLLVPHNTHKR--KI 393 (587)
Q Consensus 317 lril~c~~~~~~~~~v~~~~~~~~~~~~~~v~~li~Ll~~~~~~~~sp~~v~~lhlvel~~r~-s~~l~~~~~~~~--~~ 393 (587)
-|||+| +...+ +-...+..+..+....+ ..++++|+++-..-. ...+ ....... ..
T Consensus 8 k~ILv~---------~D~s~---------~s~~al~~A~~lA~~~~--a~l~ll~v~~~~~~~~~~~~-~~~~~~~~~~~ 66 (319)
T 3olq_A 8 QNLLVV---------IDPNQ---------DDQPALRRAVYIVQRNG--GRIKAFLPVYDLSYDMTTLL-SPDERNAMRKG 66 (319)
T ss_dssp CEEEEE---------CCTTC---------SCCHHHHHHHHHHHHHC--CEEEEEEEECCGGGGCTTTS-CHHHHHHHHHH
T ss_pred ceEEEE---------ECCCc---------ccHHHHHHHHHHHHHcC--CeEEEEEEecccchhhcccc-ChhhHHHHHHH
Confidence 369999 87777 65566655554442222 578999997632110 0000 0000000 00
Q ss_pred CCCchhHHHHHHHhhhcCCceEEEEEEEEecCCChHHHHHHHHhhcCCCEEEeccCCCccccc---cchhHHHhhccCCC
Q 043315 394 KENSTDRIMRAMTKFSKSSQVTIQPFILIAPYKTMYESISKLAQDEFIPFIILPSHQSHKMQQ---GGGFNCKIQNCAPC 470 (587)
Q Consensus 394 ~~~~~~~i~~~f~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~~~~~d---g~~~n~~vl~~apc 470 (587)
.....++.++.+.......+++++...... .+..+.|++.|+++++|+||+|.|++....+ | ..-.++++++||
T Consensus 67 ~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~--g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~~~G-s~~~~vl~~~~~ 143 (319)
T 3olq_A 67 VINQKTAWIKQQARYYLEAGIQIDIKVIWH--NRPYEAIIEEVITDKHDLLIKMAHQHDKLGSLIFT-PLDWQLLRKCPA 143 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCEEEEEEEC--SCHHHHHHHHHHHHTCSEEEEEEBCC--CCSCBCC-HHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHhhcCCeEEEEEEec--CChHHHHHHHHHhcCCCEEEEecCcCchhhccccc-ccHHHHHhcCCC
Confidence 011223344433333334567777766633 6789999999999999999999998755422 3 667899999999
Q ss_pred cEEEEEeC
Q 043315 471 SVGIYVDR 478 (587)
Q Consensus 471 sVgIlvdR 478 (587)
+|-+.-.+
T Consensus 144 PVlvv~~~ 151 (319)
T 3olq_A 144 PVWMVKDK 151 (319)
T ss_dssp CEEEEESS
T ss_pred CEEEecCc
Confidence 98777643
No 19
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=96.84 E-value=0.0036 Score=55.14 Aligned_cols=126 Identities=13% Similarity=0.095 Sum_probs=73.4
Q ss_pred cceeeecCCcccccccccccCCCCCCCCCHHHHHHHHHHhcCCCCCCcEEEEEEee-ec-cCCCc-cc-ccccccccccc
Q 043315 318 RKNLMENTPITQHKIYVENSKSGEKPRPFVHSLITLLKAFNSSEMSPLCACVLHLV-EL-VGRAA-PL-LVPHNTHKRKI 393 (587)
Q Consensus 318 ril~c~~~~~~~~~v~~~~~~~~~~~~~~v~~li~Ll~~~~~~~~sp~~v~~lhlv-el-~~r~s-~~-l~~~~~~~~~~ 393 (587)
|||+| +...+ +-...+..+..+... ....++++|++ +. +.... .. -.+........
T Consensus 6 ~ILv~---------~D~s~---------~s~~al~~a~~la~~--~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (138)
T 1q77_A 6 VLLVL---------TDAYS---------DCEKAITYAVNFSEK--LGAELDILAVLEDVYNLERANVTFGLPFPPEIKEE 65 (138)
T ss_dssp EEEEE---------ESTTC---------CCHHHHHHHHHHHTT--TCCEEEEEEECHHHHHHHHHHHHHCCCCCTHHHHH
T ss_pred EEEEE---------ccCCH---------hHHHHHHHHHHHHHH--cCCeEEEEEEecccccccccccccCCCCChHHHHH
Confidence 68998 87766 666666666655433 23679999998 63 10000 00 00000000000
Q ss_pred CCCchhHHHHHHHhh-hcCCceEEEEEEEEecCCChHHHHHHHHhhcCCCEEEeccCCCccccccchhHHHhhccCCCcE
Q 043315 394 KENSTDRIMRAMTKF-SKSSQVTIQPFILIAPYKTMYESISKLAQDEFIPFIILPSHQSHKMQQGGGFNCKIQNCAPCSV 472 (587)
Q Consensus 394 ~~~~~~~i~~~f~~~-~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~~~~~dg~~~n~~vl~~apcsV 472 (587)
.....++.++.++.+ ....+ .++..... .+..+.|++.|++.++|+|++|.|++ .+-++|++++||+|
T Consensus 66 ~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~g~-------sv~~~vl~~a~~PV 134 (138)
T 1q77_A 66 SKKRIERRLREVWEKLTGSTE-IPGVEYRI---GPLSEEVKKFVEGKGYELVVWACYPS-------AYLCKVIDGLNLAS 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHSCCC-CCCEEEEC---SCHHHHHHHHHTTSCCSEEEECSCCG-------GGTHHHHHHSSSEE
T ss_pred HHHHHHHHHHHHHHHhhccCC-cceEEEEc---CCHHHHHHHHHHhcCCCEEEEeCCCC-------chHHHHHHhCCCce
Confidence 111223444443221 22222 44444332 57899999999999999999999876 34579999999997
Q ss_pred EE
Q 043315 473 GI 474 (587)
Q Consensus 473 gI 474 (587)
-|
T Consensus 135 lv 136 (138)
T 1q77_A 135 LI 136 (138)
T ss_dssp EE
T ss_pred Ee
Confidence 65
No 20
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=96.57 E-value=0.0031 Score=63.19 Aligned_cols=50 Identities=10% Similarity=-0.005 Sum_probs=42.7
Q ss_pred CChHHHHHHHHhhcCCCEEEeccCCCccccc---cchhHHHhhccCCCcEEEEE
Q 043315 426 KTMYESISKLAQDEFIPFIILPSHQSHKMQQ---GGGFNCKIQNCAPCSVGIYV 476 (587)
Q Consensus 426 ~~m~~dI~~~A~e~~~~lIilp~h~~~~~~d---g~~~n~~vl~~apcsVgIlv 476 (587)
.+..+.|++.|+++++|+|+++-|++..... | ++-++|++++||+|-|+-
T Consensus 223 g~~~~~I~~~a~~~~~dLiVmG~~g~~~~~~~~~G-sv~~~vl~~~~~pVLvv~ 275 (290)
T 3mt0_A 223 GPADVLIPRTAQKLDAVVTVIGTVARTGLSGALIG-NTAEVVLDTLESDVLVLK 275 (290)
T ss_dssp SCHHHHHHHHHHHHTCSEEEEECCSSCCGGGCCSC-HHHHHHHTTCSSEEEEEC
T ss_pred cCHHHHHHHHHHhcCCCEEEECCCCCcCCcceecc-hHHHHHHhcCCCCEEEEC
Confidence 4778999999999999999999998776622 4 788999999999977663
No 21
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=96.49 E-value=0.006 Score=61.12 Aligned_cols=116 Identities=12% Similarity=0.063 Sum_probs=76.7
Q ss_pred cccceeeecCCcccccccccccCCCCCCCCCHHHHHHHHHHhcCCCCCCcEEEEEEeeeccCCCccccccccccccccCC
Q 043315 316 ELRKNLMENTPITQHKIYVENSKSGEKPRPFVHSLITLLKAFNSSEMSPLCACVLHLVELVGRAAPLLVPHNTHKRKIKE 395 (587)
Q Consensus 316 elril~c~~~~~~~~~v~~~~~~~~~~~~~~v~~li~Ll~~~~~~~~sp~~v~~lhlvel~~r~s~~l~~~~~~~~~~~~ 395 (587)
.-||++| +...+ .-...++.+..+... ....++++|+.+-..
T Consensus 170 ~~~Ilv~---------~d~s~---------~s~~al~~a~~la~~--~~~~l~ll~v~~~~~------------------ 211 (294)
T 3loq_A 170 FDRVLVA---------YDFSK---------WADRALEYAKFVVKK--TGGELHIIHVSEDGD------------------ 211 (294)
T ss_dssp TSEEEEE---------CCSSH---------HHHHHHHHHHHHHHH--HTCEEEEEEECSSSC------------------
T ss_pred CCEEEEE---------ECCCH---------HHHHHHHHHHHHhhh--cCCEEEEEEEccCch------------------
Confidence 3579999 76655 555555555544322 125689999976432
Q ss_pred CchhHHHHHHHhhhcCCceEEEEEEEEecCCChHHHHHHHHhhcCCCEEEeccCCCccccc---cchhHHHhhccCCCcE
Q 043315 396 NSTDRIMRAMTKFSKSSQVTIQPFILIAPYKTMYESISKLAQDEFIPFIILPSHQSHKMQQ---GGGFNCKIQNCAPCSV 472 (587)
Q Consensus 396 ~~~~~i~~~f~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~~~~~d---g~~~n~~vl~~apcsV 472 (587)
.++.++.+..+....++.++.... . .+..+.|.+.|++.++|+|+++.+++....+ | .+-+++++++||+|
T Consensus 212 --~~~~l~~~~~~l~~~~~~~~~~~~-~--g~~~~~I~~~a~~~~~dLlV~G~~~~~~~~~~~~G-s~~~~vl~~~~~pv 285 (294)
T 3loq_A 212 --KTADLRVMEEVIGAEGIEVHVHIE-S--GTPHKAILAKREEINATTIFMGSRGAGSVMTMILG-STSESVIRRSPVPV 285 (294)
T ss_dssp --CHHHHHHHHHHHHHTTCCEEEEEE-C--SCHHHHHHHHHHHTTCSEEEEECCCCSCHHHHHHH-CHHHHHHHHCSSCE
T ss_pred --HHHHHHHHHHHHHHcCCcEEEEEe-c--CCHHHHHHHHHHhcCcCEEEEeCCCCCCccceeeC-cHHHHHHhcCCCCE
Confidence 023334333342233455554333 2 5889999999999999999999998765522 3 77799999999997
Q ss_pred EEE
Q 043315 473 GIY 475 (587)
Q Consensus 473 gIl 475 (587)
-|+
T Consensus 286 Lvv 288 (294)
T 3loq_A 286 FVC 288 (294)
T ss_dssp EEE
T ss_pred EEE
Confidence 666
No 22
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=96.39 E-value=0.0057 Score=56.28 Aligned_cols=76 Identities=13% Similarity=0.128 Sum_probs=52.5
Q ss_pred hHHHHHHHhhhcCCceEEEEEEEEecCCChHHHHHHHHhhcCCCEEEeccCCCccccc---cchhHHHhhccCCCcEEEE
Q 043315 399 DRIMRAMTKFSKSSQVTIQPFILIAPYKTMYESISKLAQDEFIPFIILPSHQSHKMQQ---GGGFNCKIQNCAPCSVGIY 475 (587)
Q Consensus 399 ~~i~~~f~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~~~~~d---g~~~n~~vl~~apcsVgIl 475 (587)
++.++.+.......++.++..+.. .+..+.|++.|+++++|+||++.|++..... | .+-.+|++++||+|-|+
T Consensus 86 ~~~l~~~~~~~~~~g~~~~~~v~~---G~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~~~~G-sva~~vl~~a~~pVlvv 161 (175)
T 2gm3_A 86 LHLLEFFVNKCHEIGVGCEAWIKT---GDPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVG-TVSAFCVKHAECPVMTI 161 (175)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEEE---SCHHHHHHHHHHHHCCSEEEEEECCCC---------CHHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHHHHHHCCCceEEEEec---CCHHHHHHHHHHHhCCCEEEEeCCCCChhhhhhcC-chHHHHHhCCCCCEEEE
Confidence 344554443323345666655443 4679999999999999999999997765422 4 77799999999998777
Q ss_pred EeC
Q 043315 476 VDR 478 (587)
Q Consensus 476 vdR 478 (587)
-..
T Consensus 162 ~~~ 164 (175)
T 2gm3_A 162 KRN 164 (175)
T ss_dssp ECC
T ss_pred cCC
Confidence 543
No 23
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=96.26 E-value=0.0048 Score=62.44 Aligned_cols=54 Identities=9% Similarity=0.124 Sum_probs=45.2
Q ss_pred CChHHHHHHHHhhcCCCEEEeccCCCccccc---cchhHHHhhccCCCcEEEEEeCCC
Q 043315 426 KTMYESISKLAQDEFIPFIILPSHQSHKMQQ---GGGFNCKIQNCAPCSVGIYVDRGI 480 (587)
Q Consensus 426 ~~m~~dI~~~A~e~~~~lIilp~h~~~~~~d---g~~~n~~vl~~apcsVgIlvdRg~ 480 (587)
.+..+.|++.|+++++|+|+++-|++..... | .+-++|++++||+|-|+-.+|+
T Consensus 252 g~~~~~I~~~a~~~~~dLiV~G~~g~~~~~~~~~G-sv~~~vl~~~~~pVLvv~~~~~ 308 (319)
T 3olq_A 252 GLPEQVIPQVCEELNAGIVVLGILGRTGLSAAFLG-NTAEQLIDHIKCDLLAIKPDGF 308 (319)
T ss_dssp SCHHHHHHHHHHHTTEEEEEEECCSCCSTHHHHHH-HHHHHHHTTCCSEEEEECCTTC
T ss_pred CCcHHHHHHHHHHhCCCEEEEeccCccCCcccccc-HHHHHHHhhCCCCEEEECCCCC
Confidence 4678999999999999999999998776522 3 7889999999999887766654
No 24
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=94.52 E-value=0.088 Score=52.92 Aligned_cols=128 Identities=9% Similarity=0.036 Sum_probs=74.6
Q ss_pred ccceeeecCCcccccccccccCCCCCCCCCHHHHHHHHHHhcCCCCCCcEEEEEEeeeccCCCccccccccccccccCCC
Q 043315 317 LRKNLMENTPITQHKIYVENSKSGEKPRPFVHSLITLLKAFNSSEMSPLCACVLHLVELVGRAAPLLVPHNTHKRKIKEN 396 (587)
Q Consensus 317 lril~c~~~~~~~~~v~~~~~~~~~~~~~~v~~li~Ll~~~~~~~~sp~~v~~lhlvel~~r~s~~l~~~~~~~~~~~~~ 396 (587)
-+||+| +...+ .-...++.+..+....+ ..++++|+.+..... .. .... ......
T Consensus 172 ~~Ilv~---------~D~s~---------~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~~-~~--~~~~--~~~~~~ 226 (309)
T 3cis_A 172 APVLVG---------VDGSS---------ASELATAIAFDEASRRN--VDLVALHAWSDVDVS-EW--PGID--WPATQS 226 (309)
T ss_dssp CCEEEE---------CCSSH---------HHHHHHHHHHHHHHHTT--CCEEEEEESCSSCCT-TC--SSCC--HHHHHH
T ss_pred CeEEEE---------eCCCh---------HHHHHHHHHHHHHHhcC--CEEEEEEEeeccccc-CC--Cccc--HHHHHH
Confidence 479998 76555 44555555544432222 458999998743211 00 0000 000001
Q ss_pred chhH-HHHHHHhhhc-CCceEEEEEEEEecCCChHHHHHHHHhhcCCCEEEeccCCCccccc---cchhHHHhhccCCCc
Q 043315 397 STDR-IMRAMTKFSK-SSQVTIQPFILIAPYKTMYESISKLAQDEFIPFIILPSHQSHKMQQ---GGGFNCKIQNCAPCS 471 (587)
Q Consensus 397 ~~~~-i~~~f~~~~~-~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~~~~~d---g~~~n~~vl~~apcs 471 (587)
..++ +-+.++.+.. ..++.++....- .+..+.|.+.|+ ++|+|+++-|++..... | ++-++|++++||+
T Consensus 227 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~---g~~~~~I~~~a~--~adliV~G~~~~~~~~~~l~G-sv~~~vl~~~~~p 300 (309)
T 3cis_A 227 MAEQVLAERLAGWQERYPNVAITRVVVR---DQPARQLVQRSE--EAQLVVVGSRGRGGYAGMLVG-SVGETVAQLARTP 300 (309)
T ss_dssp HHHHHHHHHHTTHHHHCTTSCEEEEEES---SCHHHHHHHHHT--TCSEEEEESSCSSCCTTCSSC-HHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHHhhCCCCcEEEEEEc---CCHHHHHHHhhC--CCCEEEECCCCCCCccccccC-cHHHHHHhcCCCC
Confidence 1122 2223333322 235666654432 578899999997 89999999998765522 4 7889999999999
Q ss_pred EEEE
Q 043315 472 VGIY 475 (587)
Q Consensus 472 VgIl 475 (587)
|-|+
T Consensus 301 Vlvv 304 (309)
T 3cis_A 301 VIVA 304 (309)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7665
No 25
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=93.40 E-value=7.8 Score=39.54 Aligned_cols=106 Identities=8% Similarity=0.002 Sum_probs=55.1
Q ss_pred HHHHHHhhhhcCCCCC-chhHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 043315 148 LLGALLMGLIIPPGPP-LGIAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQNGSRLISFEIIIGASYLGKFVGSLLIWV 226 (587)
Q Consensus 148 ilGAFlaGL~lp~~~p-~~~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~~~~~~~~~~l~~~a~~~K~l~~~l~~~ 226 (587)
++-|+++|..+.+..| ..++....+..+....++=+.+..++. +-+.+....+. ++...++-...-+..++..++
T Consensus 175 vllP~~lG~l~r~~~~~~~~~~~~~l~~~s~~~illiv~~~~~~--~~~~~~~~~~~--v~~~~~l~~~~~~~lg~~~~r 250 (332)
T 3zux_A 175 VLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGA--SKGKIMESGLL--IFAVVVLHNGIGYLLGFFAAK 250 (332)
T ss_dssp THHHHHHHHHHHHHHGGGGHHHHTTHHHHHHHHHHHHHHHHHHH--THHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHh--hhHHHHhccHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 4668899988876422 223333323332211111111111111 22222222222 223333444556777888899
Q ss_pred HhCCChHHHHHHHHH-hhhhhhHHHHHHHHhh
Q 043315 227 FIKASIPNAVIFSCI-LSLKGIMDLIFILRWR 257 (587)
Q Consensus 227 ~~~~~~~~a~~lgll-l~~kG~~~li~~~i~~ 257 (587)
.+|.+.+|+..+++- =+.+....+.++....
T Consensus 251 ~~~~~~~~~~ti~~e~G~qNs~lai~lA~~~F 282 (332)
T 3zux_A 251 WTGLPYDAQKALTIEVGMQNSGLAAALAAAHF 282 (332)
T ss_dssp HTTCCHHHHHHHHHHHHCCCHHHHHHHHHHHS
T ss_pred HhCCCHhHhhhhhhhhhhccHHHHHHHHHHHc
Confidence 999999999998883 3445566666666544
No 26
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=92.74 E-value=0.16 Score=49.66 Aligned_cols=113 Identities=11% Similarity=0.048 Sum_probs=68.4
Q ss_pred ccceeeecCCcccccccccccCCCCCCCCCHHHHHHHHHHhcCCCCCCcEEEEEEeeeccCCCccccccccccccccCCC
Q 043315 317 LRKNLMENTPITQHKIYVENSKSGEKPRPFVHSLITLLKAFNSSEMSPLCACVLHLVELVGRAAPLLVPHNTHKRKIKEN 396 (587)
Q Consensus 317 lril~c~~~~~~~~~v~~~~~~~~~~~~~~v~~li~Ll~~~~~~~~sp~~v~~lhlvel~~r~s~~l~~~~~~~~~~~~~ 396 (587)
-||++| +...+ .-...++.+..+..... ..++++|+.+-.+ +
T Consensus 155 ~~ilv~---------~d~s~---------~~~~al~~a~~la~~~~--a~l~ll~v~~~~~---------~--------- 196 (268)
T 3ab8_A 155 EGALLG---------YDASE---------SAVRALHALAPLARALG--LGVRVVSVHEDPA---------R--------- 196 (268)
T ss_dssp CEEEEE---------CCSCH---------HHHHHHHHHHHHHHHHT--CCEEEEEECSSHH---------H---------
T ss_pred CEEEEE---------ECCCH---------HHHHHHHHHHHhhhcCC--CEEEEEEEcCcHH---------H---------
Confidence 378888 76555 44555555443332222 3489999975321 0
Q ss_pred chhHHHHHHHhhhcCCceEEEEEEEEecCCChHHHHHHHHhhcCCCEEEeccCCCccccccchhHHHhhccCCCcEEEE
Q 043315 397 STDRIMRAMTKFSKSSQVTIQPFILIAPYKTMYESISKLAQDEFIPFIILPSHQSHKMQQGGGFNCKIQNCAPCSVGIY 475 (587)
Q Consensus 397 ~~~~i~~~f~~~~~~~~v~v~~~~~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~~~~~dg~~~n~~vl~~apcsVgIl 475 (587)
.++.++.+..+....++.++.... . .+..+.|.+.|++. |+|+++- .-.+..-| ++-+++++++||+|-++
T Consensus 197 -~~~~l~~~~~~l~~~~~~~~~~~~-~--g~~~~~i~~~a~~~--dliV~G~-~~~~~~~G-s~~~~vl~~~~~pvlvv 267 (268)
T 3ab8_A 197 -AEAWALEAEAYLRDHGVEASALVL-G--GDAADHLLRLQGPG--DLLALGA-PVRRLVFG-STAERVIRNAQGPVLTA 267 (268)
T ss_dssp -HHHHHHHHHHHHHHTTCCEEEEEE-C--SCHHHHHHHHCCTT--EEEEEEC-CCSCCSSC-CHHHHHHHHCSSCEEEE
T ss_pred -HHHHHHHHHHHHHHcCCceEEEEe-C--CChHHHHHHHHHhC--CEEEECC-cccccEec-cHHHHHHhcCCCCEEEe
Confidence 122333333332223555654433 2 67899999999998 9999997 21111125 77899999999997664
No 27
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=75.74 E-value=54 Score=33.17 Aligned_cols=89 Identities=10% Similarity=-0.060 Sum_probs=50.4
Q ss_pred HHHhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043315 151 ALLMGLIIPPGPPLGIAIIERFELVIFHFFLPFFYIRIGQYTNLSSIQNG--SRLISFEIIIGASYLGKFVGSLLIWVFI 228 (587)
Q Consensus 151 AFlaGL~lp~~~p~~~~l~ekl~~~~~~~flPlFF~~~Gl~~dl~~l~~~--~~~~~~~~l~~~a~~~K~l~~~l~~~~~ 228 (587)
+.++|...|+... . ++.. ....+++-+...|++++.+.+... .+.. ....++.-++...+.++..++.+
T Consensus 27 ~~~lg~~~P~~~~---~----~~~~-i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~-~~~~l~~~~vi~Pll~~~l~~~~ 97 (332)
T 3zux_A 27 FAAAAFFAPDTFK---W----AGPY-IPWLLGIIMFGMGLTLKPSDFDILFKHPKV-VIIGVIAQFAIMPATAWCLSKLL 97 (332)
T ss_dssp HHHHHHHCGGGTG---G----GGGG-HHHHHHHHHHHHHHHCCGGGGHHHHHSHHH-HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcchhhh---h----hHHH-HHHHHHHHHHHHHhCCCHHHHHHHHhCcHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 3467777776422 1 2232 345677888899999999887532 3332 33334444555666677777777
Q ss_pred CCChHHHHHHHHHhhhhhhH
Q 043315 229 KASIPNAVIFSCILSLKGIM 248 (587)
Q Consensus 229 ~~~~~~a~~lglll~~kG~~ 248 (587)
+.+...+..+-+..++.+..
T Consensus 98 ~l~~~~~~Glil~~~~P~~~ 117 (332)
T 3zux_A 98 NLPAEIAVGVILVGCCPGGT 117 (332)
T ss_dssp TCCHHHHHHHHHHHHSCCCT
T ss_pred CCChHHHHHHHHHhcCCchh
Confidence 76654333333333444433
No 28
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=69.89 E-value=7.5 Score=33.08 Aligned_cols=51 Identities=16% Similarity=0.238 Sum_probs=27.1
Q ss_pred cchHHHHHHHHhhccCCCceEEEEEEecChHHHHHHHHhhcCCCcEEEEcccCC
Q 043315 493 ILDDNVINDFKSRNLGNACVLCHHVDVTNTLEAWEVIRSSDNDYDLVVVGKRRR 546 (587)
Q Consensus 493 ~~d~~~~~~~~~~~~~~~~v~y~e~~v~~~~~~~~~i~~~~~~~dLviVGr~~~ 546 (587)
+..++.++++.+.... ..+.+... +..| +..+.|.+..+++||+|+|+++.
T Consensus 62 ~~~~~~l~~~~~~~~~-~g~~~~~~-v~~g-~~~~~I~~~a~~~dliV~G~~~~ 112 (138)
T 3idf_A 62 EKAKLLTQKFSTFFTE-KGINPFVV-IKEG-EPVEMVLEEAKDYNLLIIGSSEN 112 (138)
T ss_dssp HHHHHHHHHHHHHHHT-TTCCCEEE-EEES-CHHHHHHHHHTTCSEEEEECCTT
T ss_pred HHHHHHHHHHHHHHHH-CCCCeEEE-EecC-ChHHHHHHHHhcCCEEEEeCCCc
Confidence 3344566666554322 12223222 2334 34444544445999999999763
No 29
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=62.40 E-value=8.9 Score=32.65 Aligned_cols=22 Identities=23% Similarity=0.182 Sum_probs=14.7
Q ss_pred HHHHHHhhcC--CCcEEEEcccCC
Q 043315 525 AWEVIRSSDN--DYDLVVVGKRRR 546 (587)
Q Consensus 525 ~~~~i~~~~~--~~dLviVGr~~~ 546 (587)
..+.|.+.++ ++||+|+|+++.
T Consensus 97 ~~~~I~~~a~~~~~dliV~G~~g~ 120 (138)
T 1q77_A 97 LSEEVKKFVEGKGYELVVWACYPS 120 (138)
T ss_dssp HHHHHHHHHTTSCCSEEEECSCCG
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCC
Confidence 4444444443 799999998753
No 30
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=57.57 E-value=10 Score=33.28 Aligned_cols=75 Identities=17% Similarity=0.233 Sum_probs=37.8
Q ss_pred hHHHHHHHHhhcc-CCCceEEEEEEecChHHHHHHHHhhc--CCCcEEEEcccCCCCCccccCCCCCCCCCccccccccc
Q 043315 495 DDNVINDFKSRNL-GNACVLCHHVDVTNTLEAWEVIRSSD--NDYDLVVVGKRRRPNSSRERDMTPWTDYEELRVIGDML 571 (587)
Q Consensus 495 d~~~~~~~~~~~~-~~~~v~y~e~~v~~~~~~~~~i~~~~--~~~dLviVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~L 571 (587)
.++.++++.+... .+-++.+ . +..| +..+.|.+.+ .++||+|+|+++.. ++.+| =+|-+.+-+
T Consensus 81 ~~~~l~~~~~~~~~~g~~~~~--~-v~~G-~~~~~I~~~a~~~~~dlIV~G~~g~~------~~~~~----~~GSv~~~v 146 (162)
T 1mjh_A 81 AKNKMENIKKELEDVGFKVKD--I-IVVG-IPHEEIVKIAEDEGVDIIIMGSHGKT------NLKEI----LLGSVTENV 146 (162)
T ss_dssp HHHHHHHHHHHHHHTTCEEEE--E-EEEE-CHHHHHHHHHHHTTCSEEEEESCCSS------CCTTC----SSCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCceEE--E-EcCC-CHHHHHHHHHHHcCCCEEEEcCCCCC------Cccce----EecchHHHH
Confidence 3455666654321 1122332 2 2223 3334444443 37999999998642 22222 256555555
Q ss_pred ccCCCCCCCccEEEeC
Q 043315 572 ASQDFCGGMNPVLVVQ 587 (587)
Q Consensus 572 as~d~~~~~~svLVvq 587 (587)
... ++++||||.
T Consensus 147 l~~----~~~pVlvv~ 158 (162)
T 1mjh_A 147 IKK----SNKPVLVVK 158 (162)
T ss_dssp HHH----CCSCEEEEC
T ss_pred HHh----CCCCEEEEe
Confidence 433 235888874
No 31
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=50.70 E-value=9 Score=33.85 Aligned_cols=49 Identities=16% Similarity=0.224 Sum_probs=27.0
Q ss_pred HHHHHHhhcC--CCcEEEEcccCCCCCccccCCCCCCCCCcccccccccccCCCCCCCccEEEeC
Q 043315 525 AWEVIRSSDN--DYDLVVVGKRRRPNSSRERDMTPWTDYEELRVIGDMLASQDFCGGMNPVLVVQ 587 (587)
Q Consensus 525 ~~~~i~~~~~--~~dLviVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~Las~d~~~~~~svLVvq 587 (587)
..+.|.+.++ ++||+|+|+++.. ++.+| =+|-..+-+... +.++||||.
T Consensus 105 ~~~~I~~~a~~~~~DLIV~G~~g~~------~~~~~----~lGSv~~~vl~~----a~~PVLvVr 155 (155)
T 3dlo_A 105 PPDDIVDFADEVDAIAIVIGIRKRS------PTGKL----IFGSVARDVILK----ANKPVICIK 155 (155)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCEEC------TTSCE----ECCHHHHHHHHH----CSSCEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCC------CCCCE----EeccHHHHHHHh----CCCCEEEeC
Confidence 3344444443 7999999988632 22111 245555544432 235888874
No 32
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=41.99 E-value=17 Score=30.95 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=14.5
Q ss_pred HHHHHHhhcC--CCcEEEEcccCC
Q 043315 525 AWEVIRSSDN--DYDLVVVGKRRR 546 (587)
Q Consensus 525 ~~~~i~~~~~--~~dLviVGr~~~ 546 (587)
..+.|.+.++ ++||+|+|+++.
T Consensus 98 ~~~~I~~~a~~~~~dliV~G~~~~ 121 (147)
T 3hgm_A 98 PSRTIVRFARKRECDLVVIGAQGT 121 (147)
T ss_dssp HHHHHHHHHHHTTCSEEEECSSCT
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCC
Confidence 3344444443 799999999864
No 33
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=36.89 E-value=34 Score=29.04 Aligned_cols=77 Identities=10% Similarity=0.129 Sum_probs=38.5
Q ss_pred cchHHHHHHHHhhccCC-C-ceEEEEEEecChHHHHHHHHh-hc--CCCcEEEEcccCCCCCccccCCCCCCCCCccccc
Q 043315 493 ILDDNVINDFKSRNLGN-A-CVLCHHVDVTNTLEAWEVIRS-SD--NDYDLVVVGKRRRPNSSRERDMTPWTDYEELRVI 567 (587)
Q Consensus 493 ~~d~~~~~~~~~~~~~~-~-~v~y~e~~v~~~~~~~~~i~~-~~--~~~dLviVGr~~~~~s~~~~gl~~w~e~~eLG~i 567 (587)
+..++.++++....... - ++.+ . +..|. ..+.|.+ .+ .++||+|+|+++.. ++.+| =+|-.
T Consensus 65 ~~~~~~l~~~~~~~~~~g~~~~~~--~-~~~g~-~~~~I~~~~a~~~~~dliV~G~~~~~------~~~~~----~~Gs~ 130 (146)
T 3s3t_A 65 AHAKDAMRQRQQFVATTSAPNLKT--E-ISYGI-PKHTIEDYAKQHPEIDLIVLGATGTN------SPHRV----AVGST 130 (146)
T ss_dssp HHHHHHHHHHHHHHTTSSCCCCEE--E-EEEEC-HHHHHHHHHHHSTTCCEEEEESCCSS------CTTTC----SSCHH
T ss_pred HHHHHHHHHHHHHHHhcCCcceEE--E-EecCC-hHHHHHHHHHhhcCCCEEEECCCCCC------CcceE----EEcch
Confidence 34456667666543221 1 3332 2 22342 3333443 33 67999999988642 22222 24554
Q ss_pred ccccccCCCCCCCccEEEeC
Q 043315 568 GDMLASQDFCGGMNPVLVVQ 587 (587)
Q Consensus 568 Gd~Las~d~~~~~~svLVvq 587 (587)
.+-+... ++++||||.
T Consensus 131 ~~~vl~~----~~~pVlvV~ 146 (146)
T 3s3t_A 131 TSYVVDH----APCNVIVIR 146 (146)
T ss_dssp HHHHHHH----CSSEEEEEC
T ss_pred HHHHhcc----CCCCEEEeC
Confidence 4444432 235888874
No 34
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=36.38 E-value=9.2 Score=33.03 Aligned_cols=50 Identities=18% Similarity=0.074 Sum_probs=25.1
Q ss_pred hcchHHHHHHHHhhccCCCceEEEEEEecChHHHHHHHHhhcC--CCcEEEEcccCC
Q 043315 492 RILDDNVINDFKSRNLGNACVLCHHVDVTNTLEAWEVIRSSDN--DYDLVVVGKRRR 546 (587)
Q Consensus 492 ~~~d~~~~~~~~~~~~~~~~v~y~e~~v~~~~~~~~~i~~~~~--~~dLviVGr~~~ 546 (587)
++..++.++++.++... ..+.+ .+..| +..+.|.+.++ ++||+|+|+++.
T Consensus 69 ~~~~~~~l~~~~~~~~~-~~~~~---~~~~g-~~~~~I~~~a~~~~~dliV~G~~~~ 120 (150)
T 3tnj_A 69 LDVEKQKLSQIGNTLGI-DPAHR---WLVWG-EPREEIIRIAEQENVDLIVVGSHGR 120 (150)
T ss_dssp HHHHHHHHHHHHHHHTC-CGGGE---EEEES-CHHHHHHHHHHHTTCSEEEEEEC--
T ss_pred HHHHHHHHHHHHHHcCC-CcceE---EEecC-CHHHHHHHHHHHcCCCEEEEecCCC
Confidence 34445667777655422 21222 22223 23334443443 799999998864
No 35
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=36.02 E-value=24 Score=29.90 Aligned_cols=48 Identities=25% Similarity=0.335 Sum_probs=26.7
Q ss_pred HHHHHHHhhcC--CCcEEEEcccCCCCCccccCCCCCCCCCcccccccccccCCCCCCCccEEEe
Q 043315 524 EAWEVIRSSDN--DYDLVVVGKRRRPNSSRERDMTPWTDYEELRVIGDMLASQDFCGGMNPVLVV 586 (587)
Q Consensus 524 ~~~~~i~~~~~--~~dLviVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~Las~d~~~~~~svLVv 586 (587)
+..+.|.+..+ ++||+|+|+++ . . +.+| =+|-..+-+... ++.+||||
T Consensus 93 ~~~~~I~~~a~~~~~dliV~G~~~-~--~----~~~~----~~Gs~~~~v~~~----~~~pVlvv 142 (143)
T 3fdx_A 93 SPKDKILALAKSLPADLVIIASHR-P--D----ITTY----LLGSNAAAVVRH----AECSVLVV 142 (143)
T ss_dssp CHHHHHHHHHHHTTCSEEEEESSC-T--T----CCSC----SSCHHHHHHHHH----CSSEEEEE
T ss_pred ChHHHHHHHHHHhCCCEEEEeCCC-C--C----Ceee----eeccHHHHHHHh----CCCCEEEe
Confidence 34444444443 79999999984 2 1 2111 255555544432 23488887
No 36
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=34.40 E-value=23 Score=29.89 Aligned_cols=75 Identities=19% Similarity=0.210 Sum_probs=37.9
Q ss_pred chHHHHHHHHhhccCCCceEEEEEEecChHHHHHHHHhhc--CCCcEEEEcccCCCCCccccCCCCCCCCCccccccccc
Q 043315 494 LDDNVINDFKSRNLGNACVLCHHVDVTNTLEAWEVIRSSD--NDYDLVVVGKRRRPNSSRERDMTPWTDYEELRVIGDML 571 (587)
Q Consensus 494 ~d~~~~~~~~~~~~~~~~v~y~e~~v~~~~~~~~~i~~~~--~~~dLviVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~L 571 (587)
.-++.++++..+ .+..++.+. +..| +..+.|.+.+ .++||+|+|+++.. ++.+| =+|-..+-+
T Consensus 61 ~~~~~l~~~~~~-~g~~~~~~~---~~~g-~~~~~I~~~a~~~~~dliV~G~~~~~------~~~~~----~~Gs~~~~v 125 (137)
T 2z08_A 61 RAEGVLEEARAL-TGVPKEDAL---LLEG-VPAEAILQAARAEKADLIVMGTRGLG------ALGSL----FLGSQSQRV 125 (137)
T ss_dssp HHHHHHHHHHHH-HCCCGGGEE---EEES-SHHHHHHHHHHHTTCSEEEEESSCTT------CCSCS----SSCHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCccEEE---EEec-CHHHHHHHHHHHcCCCEEEECCCCCc------hhhhh----hhccHHHHH
Confidence 345666676654 221133332 1223 2334444443 37999999988642 22111 255555544
Q ss_pred ccCCCCCCCccEEEeC
Q 043315 572 ASQDFCGGMNPVLVVQ 587 (587)
Q Consensus 572 as~d~~~~~~svLVvq 587 (587)
... ++.+||||.
T Consensus 126 l~~----~~~pVlvv~ 137 (137)
T 2z08_A 126 VAE----APCPVLLVR 137 (137)
T ss_dssp HHH----CSSCEEEEC
T ss_pred Hhc----CCCCEEEeC
Confidence 433 245888873
No 37
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=33.82 E-value=28 Score=30.59 Aligned_cols=22 Identities=18% Similarity=0.539 Sum_probs=14.6
Q ss_pred HHHHHHhhc--CCCcEEEEcccCC
Q 043315 525 AWEVIRSSD--NDYDLVVVGKRRR 546 (587)
Q Consensus 525 ~~~~i~~~~--~~~dLviVGr~~~ 546 (587)
..+.|.+.+ .++||+|+|+++.
T Consensus 105 ~~~~I~~~a~~~~~DlIV~G~~g~ 128 (170)
T 2dum_A 105 PWDEIVKVAEEENVSLIILPSRGK 128 (170)
T ss_dssp HHHHHHHHHHHTTCSEEEEESCCC
T ss_pred hHHHHHHHHHHcCCCEEEECCCCC
Confidence 334444443 3799999999864
No 38
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=30.59 E-value=37 Score=29.33 Aligned_cols=39 Identities=28% Similarity=0.256 Sum_probs=24.4
Q ss_pred CCCcEEEEcccCCCCCccccCCCCCCCCCcccccccccccCCCCCCCccEEEeC
Q 043315 534 NDYDLVVVGKRRRPNSSRERDMTPWTDYEELRVIGDMLASQDFCGGMNPVLVVQ 587 (587)
Q Consensus 534 ~~~dLviVGr~~~~~s~~~~gl~~w~e~~eLG~iGd~Las~d~~~~~~svLVvq 587 (587)
.++||+|+|+++.. | |. . =+|-..+-+... ++++||||.
T Consensus 118 ~~~DlIV~G~~g~~------~---~~-~-~~Gs~~~~vl~~----a~~PVlvV~ 156 (156)
T 3fg9_A 118 FKPDLLVTGADTEF------P---HS-K-IAGAIGPRLARK----APISVIVVR 156 (156)
T ss_dssp HCCSEEEEETTCCC------T---TS-S-SCSCHHHHHHHH----CSSEEEEEC
T ss_pred cCCCEEEECCCCCC------c---cc-e-eecchHHHHHHh----CCCCEEEeC
Confidence 67999999998642 1 21 1 266665555533 235888874
No 39
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=29.71 E-value=70 Score=28.07 Aligned_cols=48 Identities=21% Similarity=0.122 Sum_probs=25.0
Q ss_pred hHHHHHHHHhhccC-CCc-eEEEEEEecChHHHHHHHHhhc--CCCcEEEEcccCC
Q 043315 495 DDNVINDFKSRNLG-NAC-VLCHHVDVTNTLEAWEVIRSSD--NDYDLVVVGKRRR 546 (587)
Q Consensus 495 d~~~~~~~~~~~~~-~~~-v~y~e~~v~~~~~~~~~i~~~~--~~~dLviVGr~~~ 546 (587)
.++.++++.+.... +-. +.+ . +..|. ..+.|.+.+ .++||+|+|+++.
T Consensus 79 ~~~~l~~~~~~~~~~gv~~v~~--~-v~~G~-~~~~I~~~a~~~~~DLIV~G~~g~ 130 (163)
T 1tq8_A 79 IYEILHDAKERAHNAGAKNVEE--R-PIVGA-PVDALVNLADEEKADLLVVGNVGL 130 (163)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEE--E-EECSS-HHHHHHHHHHHTTCSEEEEECCCC
T ss_pred HHHHHHHHHHHHHHcCCCeEEE--E-EecCC-HHHHHHHHHHhcCCCEEEECCCCC
Confidence 44556665544222 122 333 2 23342 334444433 6799999999864
No 40
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=27.69 E-value=51 Score=29.61 Aligned_cols=39 Identities=18% Similarity=0.150 Sum_probs=33.4
Q ss_pred EEEEEEEecCCChHHHHHHHHhhcCCCEEEeccCCCccc
Q 043315 416 IQPFILIAPYKTMYESISKLAQDEFIPFIILPSHQSHKM 454 (587)
Q Consensus 416 v~~~~~vs~~~~m~~dI~~~A~e~~~~lIilp~h~~~~~ 454 (587)
..-..++-|...|+..|.++|++-.|++||-|+......
T Consensus 90 ~DLIYsirPP~El~~~i~~lA~~v~adliI~pL~~E~~~ 128 (153)
T 2k4m_A 90 AALIYSIRPPAEIHSSLMRVADAVGARLIIKPLTGEDIV 128 (153)
T ss_dssp EEEEEEESCCTTTHHHHHHHHHHHTCEEEEECBTTBCCC
T ss_pred cCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEcCCCCcCC
Confidence 345668889999999999999999999999999765543
No 41
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=23.36 E-value=75 Score=25.95 Aligned_cols=85 Identities=18% Similarity=0.203 Sum_probs=50.8
Q ss_pred CChHHHHHHHHhhcCCCEEEeccCCCccccccchhHHHhhccCCCcEEEEEeCCCCCCccccCchhhcchHHHHHHHHhh
Q 043315 426 KTMYESISKLAQDEFIPFIILPSHQSHKMQQGGGFNCKIQNCAPCSVGIYVDRGINDLIEAEDVSERILDDNVINDFKSR 505 (587)
Q Consensus 426 ~~m~~dI~~~A~e~~~~lIilp~h~~~~~~dg~~~n~~vl~~apcsVgIlvdRg~~dd~~~~~~~~~~~d~~~~~~~~~~ 505 (587)
+..-.+.-.+|+|+.-.-|++-...++-. .-.-.+....--.|-.+ -...|+.-++||+.+
T Consensus 36 delkkemkklaeeknfekiliisndkqll----kemlelisklgykvfll---------------lqdqdeneleefkrk 96 (134)
T 2lci_A 36 DELKKEMKKLAEEKNFEKILIISNDKQLL----KEMLELISKLGYKVFLL---------------LQDQDENELEEFKRK 96 (134)
T ss_dssp HHHHHHHHHHHHCCSCCCEEEEESCHHHH----HHHHHHHHHHTCCEEEE---------------EECSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCcceEEEEcCcHHHH----HHHHHHHHHhCceeEEE---------------eecCchhHHHHHHHH
Confidence 45667788999998766555543222211 00112222222333233 124577889999987
Q ss_pred ccCCCceEEEEEEecChHHHHHHHHhh
Q 043315 506 NLGNACVLCHHVDVTNTLEAWEVIRSS 532 (587)
Q Consensus 506 ~~~~~~v~y~e~~v~~~~~~~~~i~~~ 532 (587)
-+..+ |.-..|+|-+|.+...|+.
T Consensus 97 iesqg---yevrkvtddeealkivref 120 (134)
T 2lci_A 97 IESQG---YEVRKVTDDEEALKIVREF 120 (134)
T ss_dssp HHTTT---CEEEEECCHHHHHHHHHHH
T ss_pred HHhCC---eeeeecCChHHHHHHHHHH
Confidence 65544 7777889999999888764
No 42
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=20.13 E-value=72 Score=28.01 Aligned_cols=22 Identities=32% Similarity=0.306 Sum_probs=14.3
Q ss_pred HHHHHHhhc--CCCcEEEEcccCC
Q 043315 525 AWEVIRSSD--NDYDLVVVGKRRR 546 (587)
Q Consensus 525 ~~~~i~~~~--~~~dLviVGr~~~ 546 (587)
..+.|.+.. .++||+|+|+++.
T Consensus 112 ~~~~I~~~a~~~~~DLIVmG~~g~ 135 (175)
T 2gm3_A 112 PKDVICQEVKRVRPDFLVVGSRGL 135 (175)
T ss_dssp HHHHHHHHHHHHCCSEEEEEECCC
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCC
Confidence 334444433 3799999998763
Done!