BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043317
(700 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 224 bits (571), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 208/653 (31%), Positives = 299/653 (45%), Gaps = 95/653 (14%)
Query: 23 VLDLSGSSSNCLKYLSHLKVLDISHNQXXXXXXXX---XXXXXXXEYLDLSYNNFEGPCP 79
LD G S LK L+ L+VLD+S N ++L +S N G
Sbjct: 137 TLDFPGKVSGGLK-LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD 195
Query: 80 LSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQYDLKY 139
+S N LE L +SS N F + L +CS L++
Sbjct: 196 VSRCVN---LEFLDVSSNN-------------FSTGIPFLGDCSA------------LQH 227
Query: 140 LDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGT 199
LD+S N L GDF S + T+L++L +++N F G +P L +L + N F G
Sbjct: 228 LDISGNKLSGDF-SRAISTCTELKLLNISSNQFVG--PIPPLPLKSLQYLSLAENKFTGE 284
Query: 200 LPQDMGTILKKLLVLDISNNHFEGNIPSSVG-------------------------EMKE 234
+P + L LD+S NHF G +P G +M+
Sbjct: 285 IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG 344
Query: 235 LIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQ-----MEFLYL 289
L +L LS N FS + SL LDLS NNF G NL Q ++ LYL
Sbjct: 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP---NLCQNPKNTLQELYL 401
Query: 290 ENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQ 349
+NN F+GKI L N ++L L +S N+LSG IP +G+ S L L + N LEG IP +
Sbjct: 402 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 461
Query: 350 LLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDL 408
L+ +TL+ L + N L+G + S N ++L + + N L+G IP + R L L L
Sbjct: 462 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 521
Query: 409 RGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPP 468
N+ G IP ++ R L +DL+ N FNG+IP+ Q + G+
Sbjct: 522 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM--FKQSGKIAANFIAGKR----- 574
Query: 469 LGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVE----FVTKN----RYELYNG------S 514
+ YI N + E Q ++ E T+N +Y G
Sbjct: 575 --YVYI---KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD 629
Query: 515 NLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSN 574
N M+ LD+S N L+G +P EIG + + LNL HN +SGSIP +L+ + LDLS+
Sbjct: 630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS 689
Query: 575 NRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDESSYRGNLYLCG 627
N+L G+IP + L L+ ++S NNLSG IP+ GQ+ TF + + N LCG
Sbjct: 690 NKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 742
Score = 135 bits (339), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 156/463 (33%), Positives = 227/463 (49%), Gaps = 42/463 (9%)
Query: 137 LKYLDLSLNNLVGDFP---SWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDF---LHHLD 190
LK+L++S N L DFP S L+ N+ LEVL L+ NS +G + D L HL
Sbjct: 128 LKFLNVSSNTL--DFPGKVSGGLKLNS-LEVLDLSANSISGANVVGWVLSDGCGELKHLA 184
Query: 191 ASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFS 250
S N G + D+ + L LD+S+N+F IP +G+ L L +S N S DFS
Sbjct: 185 ISGNKISGDV--DVSRCVN-LEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFS 240
Query: 251 TPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTK-LY 309
T C L L++S N F G L L +++L L NKF+G+I + L + L
Sbjct: 241 RAIST-CTELKLLNISSNQFVGPI--PPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLT 297
Query: 310 QLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQ-LLNHRTLKLLSVSENYLSG 368
LD+S N G +P + G+ S LE L +S+N G +P+ LL R LK+L +S N SG
Sbjct: 298 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG 357
Query: 369 SMTSSF-NLS-SLKHLYVQKNALSGPIPDMLFRSSK--LMTLDLRGNNLEGQIPDQICQL 424
+ S NLS SL L + N SGPI L ++ K L L L+ N G+IP +
Sbjct: 358 ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC 417
Query: 425 RRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDL 484
L + LS N +G+IPS ++ + + ++ L+ L P Y+ T LD
Sbjct: 418 SELVSLHLSFNYLSGTIPSSLGSLSK--LRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475
Query: 485 EVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIR 544
+ + L N +NLN+ + LS N LTG +P IG L+ +
Sbjct: 476 N---------------DLTGEIPSGLSNCTNLNW---ISLSNNRLTGEIPKWIGRLENLA 517
Query: 545 GLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIE 587
L LS+N SG+IP + + + LDL+ N +G IPA + +
Sbjct: 518 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 560
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 157/541 (29%), Positives = 232/541 (42%), Gaps = 98/541 (18%)
Query: 21 LQVLDLSGSS-SNCLKYL---SHLKVLDISHNQXXXXXXXXXXXXXXXEYLDLSYNNFEG 76
L+ LD+S ++ S + +L S L+ LDIS N+ + L++S N F G
Sbjct: 202 LEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 261
Query: 77 PCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTF--QLKVLELA-NCSLNVVPTFLLH 133
P P L + + LS N + +FL L L+L+ N VP F
Sbjct: 262 PIPPLPLKS-----LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 316
Query: 134 QYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNL--RLPNTKHDFLHHLDA 191
L+ L LS NN G+ P L L+VL L+ N F+G L L N L LD
Sbjct: 317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT-LDL 375
Query: 192 SSNNFIGT-LPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFS 250
SSNNF G LP L L + NN F G IP ++ EL+ LHLS N S +
Sbjct: 376 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG--T 433
Query: 251 TPFLTGCIS-LWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLY 309
P G +S L L L N G+ + + + +E L L+ N +G+I GL N T L
Sbjct: 434 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 493
Query: 310 QLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGS 369
+ +S+N L+G IP W+G NL IL +SNN GNIP +L + R+L L ++ N +G+
Sbjct: 494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 553
Query: 370 MTSSF----------NLSSLKHLYVQKNALS-------------GPIPDMLFRSS----- 401
+ ++ ++ +++Y++ + + G + L R S
Sbjct: 554 IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC 613
Query: 402 -------------------KLMTLDLRGNNLEGQIP------------------------ 418
+M LD+ N L G IP
Sbjct: 614 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 673
Query: 419 DQICQLRRLGMMDLSHNRFNGSIP---SCFTNMLQWTIENVDLFG-----GELSIFPPLG 470
D++ LR L ++DLS N+ +G IP S T + + + N +L G G+ FPP
Sbjct: 674 DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAK 733
Query: 471 F 471
F
Sbjct: 734 F 734
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 135/433 (31%), Positives = 198/433 (45%), Gaps = 64/433 (14%)
Query: 211 LLVLDISNNHFEGNIPS--SVGEMKELIILHLSKNNFSEDFSTPFLTGCI--SLWFLDLS 266
L LD+S N G + + S+G L L++S N DF G SL LDLS
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKVSGGLKLNSLEVLDLS 159
Query: 267 DN-----NFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGH 321
N N G S +++ L + NK SG ++ + L LD+S N S
Sbjct: 160 ANSISGANVVGWVLSDGCG--ELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTG 215
Query: 322 IPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKH 381
IP ++G+ S L+ L +S N L G+ + LKLL++S N G + L SL++
Sbjct: 216 IP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP-LPLKSLQY 273
Query: 382 LYVQKNALSGPIPDMLFRSSKLMT-LDLRGNNLEGQIP---------------------- 418
L + +N +G IPD L + +T LDL GN+ G +P
Sbjct: 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 333
Query: 419 ---DQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELS--IFPPLGFCY 473
D + ++R L ++DLS N F+G +P TN L ++ +DL S I P L C
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTN-LSASLLTLDLSSNNFSGPILPNL--CQ 390
Query: 474 IGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNV 533
+TL + + FT K+ N EL V L LS N L+G +
Sbjct: 391 ---NPKNTLQELYLQNNGFTG----KIPPTLSNCSEL---------VSLHLSFNYLSGTI 434
Query: 534 PSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSN 593
PS +G L K+R L L N L G IP+ ++ +E+L L N L+G+IP+ L L+
Sbjct: 435 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW 494
Query: 594 FNVSYNNLSGLIP 606
++S N L+G IP
Sbjct: 495 ISLSNNRLTGEIP 507
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 224 bits (570), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 208/653 (31%), Positives = 299/653 (45%), Gaps = 95/653 (14%)
Query: 23 VLDLSGSSSNCLKYLSHLKVLDISHNQXXXXXXXX---XXXXXXXEYLDLSYNNFEGPCP 79
LD G S LK L+ L+VLD+S N ++L +S N G
Sbjct: 134 TLDFPGKVSGGLK-LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD 192
Query: 80 LSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLLHQYDLKY 139
+S N LE L +SS N F + L +CS L++
Sbjct: 193 VSRCVN---LEFLDVSSNN-------------FSTGIPFLGDCSA------------LQH 224
Query: 140 LDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGT 199
LD+S N L GDF S + T+L++L +++N F G +P L +L + N F G
Sbjct: 225 LDISGNKLSGDF-SRAISTCTELKLLNISSNQFVG--PIPPLPLKSLQYLSLAENKFTGE 281
Query: 200 LPQDMGTILKKLLVLDISNNHFEGNIPSSVG-------------------------EMKE 234
+P + L LD+S NHF G +P G +M+
Sbjct: 282 IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG 341
Query: 235 LIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQ-----MEFLYL 289
L +L LS N FS + SL LDLS NNF G NL Q ++ LYL
Sbjct: 342 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP---NLCQNPKNTLQELYL 398
Query: 290 ENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQ 349
+NN F+GKI L N ++L L +S N+LSG IP +G+ S L L + N LEG IP +
Sbjct: 399 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 458
Query: 350 LLNHRTLKLLSVSENYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDL 408
L+ +TL+ L + N L+G + S N ++L + + N L+G IP + R L L L
Sbjct: 459 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 518
Query: 409 RGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPP 468
N+ G IP ++ R L +DL+ N FNG+IP+ Q + G+
Sbjct: 519 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM--FKQSGKIAANFIAGKR----- 571
Query: 469 LGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVE----FVTKN----RYELYNG------S 514
+ YI N + E Q ++ E T+N +Y G
Sbjct: 572 --YVYI---KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD 626
Query: 515 NLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSN 574
N M+ LD+S N L+G +P EIG + + LNL HN +SGSIP +L+ + LDLS+
Sbjct: 627 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS 686
Query: 575 NRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDESSYRGNLYLCG 627
N+L G+IP + L L+ ++S NNLSG IP+ GQ+ TF + + N LCG
Sbjct: 687 NKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 739
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 160/480 (33%), Positives = 232/480 (48%), Gaps = 48/480 (10%)
Query: 137 LKYLDLSLNNLVGDFP---SWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDF---LHHLD 190
LK+L++S N L DFP S L+ N+ LEVL L+ NS +G + D L HL
Sbjct: 125 LKFLNVSSNTL--DFPGKVSGGLKLNS-LEVLDLSANSISGANVVGWVLSDGCGELKHLA 181
Query: 191 ASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFS 250
S N G + D+ + L LD+S+N+F IP +G+ L L +S N S DFS
Sbjct: 182 ISGNKISGDV--DVSRCVN-LEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFS 237
Query: 251 TPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTK-LY 309
T C L L++S N F G L L +++L L NKF+G+I + L + L
Sbjct: 238 RAIST-CTELKLLNISSNQFVGPI--PPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLT 294
Query: 310 QLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQ-LLNHRTLKLLSVSENYLSG 368
LD+S N G +P + G+ S LE L +S+N G +P+ LL R LK+L +S N SG
Sbjct: 295 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG 354
Query: 369 SMTSSF-NLS-SLKHLYVQKNALSGPIPDMLFRSSK--LMTLDLRGNNLEGQIPDQICQL 424
+ S NLS SL L + N SGPI L ++ K L L L+ N G+IP +
Sbjct: 355 ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC 414
Query: 425 RRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDL 484
L + LS N +G+IPS ++ + + ++ L+ L P Y+ T LD
Sbjct: 415 SELVSLHLSFNYLSGTIPSSLGSLSK--LRDLKLWLNMLEGEIPQELMYVKTLETLILDF 472
Query: 485 EVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIR 544
+ + L N +NLN+ + LS N LTG +P IG L+ +
Sbjct: 473 N---------------DLTGEIPSGLSNCTNLNW---ISLSNNRLTGEIPKWIGRLENLA 514
Query: 545 GLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQL------IELNFLSNFNVSY 598
L LS+N SG+IP + + + LDL+ N +G IPA + I NF++ Y
Sbjct: 515 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVY 574
Score = 121 bits (304), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 157/541 (29%), Positives = 232/541 (42%), Gaps = 98/541 (18%)
Query: 21 LQVLDLSGSS-SNCLKYL---SHLKVLDISHNQXXXXXXXXXXXXXXXEYLDLSYNNFEG 76
L+ LD+S ++ S + +L S L+ LDIS N+ + L++S N F G
Sbjct: 199 LEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 258
Query: 77 PCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTF--QLKVLELA-NCSLNVVPTFLLH 133
P P L + + LS N + +FL L L+L+ N VP F
Sbjct: 259 PIPPLPLKS-----LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 313
Query: 134 QYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNL--RLPNTKHDFLHHLDA 191
L+ L LS NN G+ P L L+VL L+ N F+G L L N L LD
Sbjct: 314 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT-LDL 372
Query: 192 SSNNFIGT-LPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFS 250
SSNNF G LP L L + NN F G IP ++ EL+ LHLS N S +
Sbjct: 373 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG--T 430
Query: 251 TPFLTGCIS-LWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLY 309
P G +S L L L N G+ + + + +E L L+ N +G+I GL N T L
Sbjct: 431 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN 490
Query: 310 QLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGS 369
+ +S+N L+G IP W+G NL IL +SNN GNIP +L + R+L L ++ N +G+
Sbjct: 491 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 550
Query: 370 MTSSF----------NLSSLKHLYVQKNALS-------------GPIPDMLFRSS----- 401
+ ++ ++ +++Y++ + + G + L R S
Sbjct: 551 IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC 610
Query: 402 -------------------KLMTLDLRGNNLEGQIP------------------------ 418
+M LD+ N L G IP
Sbjct: 611 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 670
Query: 419 DQICQLRRLGMMDLSHNRFNGSIP---SCFTNMLQWTIENVDLFG-----GELSIFPPLG 470
D++ LR L ++DLS N+ +G IP S T + + + N +L G G+ FPP
Sbjct: 671 DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAK 730
Query: 471 F 471
F
Sbjct: 731 F 731
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 135/433 (31%), Positives = 198/433 (45%), Gaps = 64/433 (14%)
Query: 211 LLVLDISNNHFEGNIPS--SVGEMKELIILHLSKNNFSEDFSTPFLTGCI--SLWFLDLS 266
L LD+S N G + + S+G L L++S N DF G SL LDLS
Sbjct: 99 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKVSGGLKLNSLEVLDLS 156
Query: 267 DN-----NFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGH 321
N N G S +++ L + NK SG ++ + L LD+S N S
Sbjct: 157 ANSISGANVVGWVLSDGCG--ELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTG 212
Query: 322 IPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKH 381
IP ++G+ S L+ L +S N L G+ + LKLL++S N G + L SL++
Sbjct: 213 IP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP-LPLKSLQY 270
Query: 382 LYVQKNALSGPIPDMLFRSSKLMT-LDLRGNNLEGQIP---------------------- 418
L + +N +G IPD L + +T LDL GN+ G +P
Sbjct: 271 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE 330
Query: 419 ---DQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQWTIENVDLFGGELS--IFPPLGFCY 473
D + ++R L ++DLS N F+G +P TN L ++ +DL S I P L C
Sbjct: 331 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTN-LSASLLTLDLSSNNFSGPILPNL--C- 386
Query: 474 IGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNV 533
+TL + + FT K+ N EL V L LS N L+G +
Sbjct: 387 --QNPKNTLQELYLQNNGFTG----KIPPTLSNCSEL---------VSLHLSFNYLSGTI 431
Query: 534 PSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSN 593
PS +G L K+R L L N L G IP+ ++ +E+L L N L+G+IP+ L L+
Sbjct: 432 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW 491
Query: 594 FNVSYNNLSGLIP 606
++S N L+G IP
Sbjct: 492 ISLSNNRLTGEIP 504
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 77/257 (29%), Positives = 122/257 (47%), Gaps = 28/257 (10%)
Query: 375 NLSSLKHLYVQK-NALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLS 433
NL L LY+ N L GPIP + + ++L L + N+ G IPD + Q++ L +D S
Sbjct: 74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS 133
Query: 434 HNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFT 493
+N +G++P +++ + + G +S P + + S R+ T
Sbjct: 134 YNALSGTLPPSISSLPN--LVGITFDGNRISGAIPDSYGSFSKLFTSM----TISRNRLT 187
Query: 494 SPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCL 553
++ F +NLN + +DLS N L G+ G + + ++L+ N L
Sbjct: 188 G--KIPPTF-----------ANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233
Query: 554 S---GSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQ 610
+ G + S + + LDL NNR+ G +P L +L FL + NVS+NNL G IP G
Sbjct: 234 AFDLGKVGLS----KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN 289
Query: 611 YSTFDESSYRGNLYLCG 627
FD S+Y N LCG
Sbjct: 290 LQRFDVSAYANNKCLCG 306
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/242 (30%), Positives = 105/242 (43%), Gaps = 18/242 (7%)
Query: 346 IPVQLLNHRTLKLLSVSE-NYLSGSMTSSF-NLSSLKHLYVQKNALSGPIPDMLFRSSKL 403
IP L N L L + N L G + + L+ L +LY+ +SG IPD L + L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 404 MTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNMLQ----WTIENVDLF 459
+TLD N L G +P I L L + NR +G+IP + + + TI L
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 460 GGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKNRYELYNG-----S 514
G F L ++ N LE +F S + + + KN G
Sbjct: 188 GKIPPTFANLNLAFVDLSRNM---LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSK 244
Query: 515 NLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSN 574
NLN GLDL N + G +P + L+ + LN+S N L G IP+ NLQ + +N
Sbjct: 245 NLN---GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYAN 300
Query: 575 NR 576
N+
Sbjct: 301 NK 302
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 87/200 (43%), Gaps = 26/200 (13%)
Query: 268 NNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMG 327
NN G LTQ+ +LY+ + SG I + L L LD S+N LSG +P +
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 328 NFSNLEILLMSNNCLEGNIPVQLLNHRTL-KLLSVSENYLSGSMTSSFNLSSLKHLYVQK 386
+ NL + N + G IP + L +++S N L+G + +F +L + + +
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSR 206
Query: 387 NALSGPIPDMLFRSSK------------------------LMTLDLRGNNLEGQIPDQIC 422
N L G +LF S K L LDLR N + G +P +
Sbjct: 207 NMLEGDA-SVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT 265
Query: 423 QLRRLGMMDLSHNRFNGSIP 442
QL+ L +++S N G IP
Sbjct: 266 QLKFLHSLNVSFNNLCGEIP 285
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 79/284 (27%), Positives = 117/284 (41%), Gaps = 38/284 (13%)
Query: 67 LDLSYNNFEGPCPL-SSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLN 125
LDLS N P P+ SSLAN L L + NN++ QL L + + +++
Sbjct: 55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114
Query: 126 -VVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHD 184
+P FL L LD S N L G P + + + F N +G +P++
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF-DGNRISG--AIPDSYGS 171
Query: 185 F---LHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLS 241
F + S N G +P + L +D+S N EG+ G K +HL+
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANL--NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229
Query: 242 KNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEG 301
KN+ + D L+ +L LDL +N YG LTQ++F
Sbjct: 230 KNSLAFDLGKVGLSK--NLNGLDLRNNRIYGTLPQ---GLTQLKF--------------- 269
Query: 302 LLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNN-CLEG 344
L+ L++S N L G IP GN ++ +NN CL G
Sbjct: 270 ------LHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 87/230 (37%), Gaps = 19/230 (8%)
Query: 1 YSGSLTNLY-IFLTGLANLTILQVL-----DLSGSSSNCLKYLSHLKVLDISHNQXXXXX 54
Y G + NL +A LT L L ++SG+ + L + L LD S+N
Sbjct: 82 YIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL 141
Query: 55 XXXXXXXXXXEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQL 114
+ N G P S + SKL + S N + T PTF
Sbjct: 142 PPSISSLPNLVGITFDGNRISGAIP-DSYGSFSKLFTSMTISRNRL----TGKIPPTFAN 196
Query: 115 KVLELANCSLNV----VPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNN 170
L + S N+ + + + L+ N+L D L N L L L NN
Sbjct: 197 LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKN--LNGLDLRNN 254
Query: 171 SFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNH 220
G L T+ FLH L+ S NN G +PQ G L++ V +NN
Sbjct: 255 RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNK 302
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 77/182 (42%), Gaps = 34/182 (18%)
Query: 3 GSLTNLYIFLTGLANLTILQVLDLSG---SSSNC----LKYLSHLKVLDISHNQXXXXXX 55
G++ L++ + L L LQ LDLS +S+C LK LSHL+ L++SHN+
Sbjct: 331 GNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQS 390
Query: 56 XXXXXXXXXEYLDLSYNNFEGPCPLSSLANHSKLEVL-----LLSSTNNMLL-------- 102
E LDL++ P S N L+VL L ++N LL
Sbjct: 391 QAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRH 450
Query: 103 ------------VKTENFLPTF-QLKVLELANCSLNVVPTFLLHQY-DLKYLDLSLNNLV 148
+ N L T L+VL L++C L + H + ++DLS N+L
Sbjct: 451 LNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLT 510
Query: 149 GD 150
D
Sbjct: 511 CD 512
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 522 LDLSCNELTGN--VPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSG 579
LDLS N++ + ++ +L ++ LNLSHN G ++F +E LDL+ RL
Sbjct: 352 LDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHI 411
Query: 580 QIPAQLIE-LNFLSNFNVSY 598
P + L+FL N++Y
Sbjct: 412 NAPQSPFQNLHFLQVLNLTY 431
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 105/455 (23%), Positives = 181/455 (39%), Gaps = 82/455 (18%)
Query: 34 LKYLSHLKVLDISHNQXXXXXXXXXXXXXXXEYLDLSYNNFE--GPCPLSSLANHSKLEV 91
+ +LS L+VL +SHN+ EYLD+S+N + CP++SL +
Sbjct: 72 ISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRH------ 125
Query: 92 LLLSSTNNMLLVKTENFLPTFQLKVLELANCS---LNVVPTFLLHQYDLKYLDLSLNNLV 148
L LS + +L + F +L L L+ L+++P LH + +S +
Sbjct: 126 LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKG 185
Query: 149 GDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTIL 208
G+ S + N T L ++F N+ F+ + N + L HL S+ Q + T L
Sbjct: 186 GETESLQIPNTTVLHLVFHPNSLFSVQV---NMSVNALGHLQLSNIKLNDENCQRLMTFL 242
Query: 209 KKL----LVLDISNNHFEGNIPSSVG---------------------------------- 230
+L +L+++ H E SV
Sbjct: 243 SELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSET 302
Query: 231 EMKELIILHL-------SKNNFSEDFS-----------TPFLTGCI-----SLWFLDLSD 267
+K L+I H+ SK F+ TPF+ S FL+ +
Sbjct: 303 ALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQ 362
Query: 268 NNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLL--NSTKLYQLDISHNFLSGHIPHW 325
N F F L +++ L L+ N + L+ N + L LD+S N L+ H
Sbjct: 363 NVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR 422
Query: 326 MGNFS-NLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYV 384
++ ++ +L +S+N L G++ + L + +K+L + N + +L +L+ L V
Sbjct: 423 TCAWAESILVLNLSSNMLTGSV-FRCLPPK-VKVLDLHNNRIMSIPKDVTHLQALQELNV 480
Query: 385 QKNALSGPIPDMLF-RSSKLMTLDLRGNNLEGQIP 418
N L +PD +F R + L + L N + P
Sbjct: 481 ASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP 514
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 51/110 (46%), Gaps = 14/110 (12%)
Query: 499 KVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNV-PSEIGDLQKIRGLNLSHNCLSGSI 557
KV +TKN ++ + LD+S N L + + I LNLS N L+GS+
Sbjct: 394 KVALMTKN---------MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV 444
Query: 558 PRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD 607
R ++ LDL NNR+ IP + L L NV+ N L +PD
Sbjct: 445 FRCLP--PKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKS-VPD 490
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 124/449 (27%), Positives = 186/449 (41%), Gaps = 71/449 (15%)
Query: 21 LQVLDLSGSSSNCLKYLSHLKVLDISHNQXXXXXXXXXXXXXXXEYLDLSYNNFEGPCPL 80
+Q LD+S K+ L+ LD+SHN+ ++LDLS+N F+
Sbjct: 57 IQYLDIS-----VFKFNQELEYLDLSHNKLVKISCHPTVNL---KHLDLSFNAFDALPIC 108
Query: 81 SSLANHSKLEVLLLSSTN---------------NMLLVKTENFLPTFQLKVLELANC-SL 124
N S+L+ L LS+T+ +LLV E + + L+ N SL
Sbjct: 109 KEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESL 168
Query: 125 NVV-PT-----FLLHQYDLKYLDLSLNNL--------VGDFPSWM--LQNNTKLEVLFLT 168
++V PT F+L +L L+N+ F S + LQ N KL L L
Sbjct: 169 HIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLN 228
Query: 169 N-----NSFTGNLRLPNTKHDFLHHLDASSNNFIGTLP-QDM---GTILKKLLVLDISNN 219
N NSF L+L H + + S+ G L +D GT LK L + + ++
Sbjct: 229 NIETTWNSFIRILQL--VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSD 286
Query: 220 HFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCIS----LWFLDLSDNNFYGQFF 275
F G S + E I +++ NF+ + C S LD S+N F
Sbjct: 287 VF-GFPQSYIYE----IFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVF 341
Query: 276 SKDLNLTQMEFLYLENNKFS--GKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLE 333
+LT++E L L+ N+ KI E L QLDIS N +S G+ S +
Sbjct: 342 ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS--YDEKKGDCSWTK 399
Query: 334 ILL---MSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALS 390
LL MS+N L I + L R +K+L + N + L +L+ L V N L
Sbjct: 400 SLLSLNMSSNILTDTI-FRCLPPR-IKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLK 457
Query: 391 GPIPDMLF-RSSKLMTLDLRGNNLEGQIP 418
+PD +F R + L + L N + P
Sbjct: 458 S-VPDGIFDRLTSLQKIWLHTNPWDCSCP 485
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 107/449 (23%), Positives = 179/449 (39%), Gaps = 75/449 (16%)
Query: 37 LSHLKVLDISHNQXXXXXXXXXXXXXXXEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSS 96
LS L++L ISHN+ EYLDLS+N L ++ H + + L
Sbjct: 44 LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK------LVKISCHPTVNLKHLDL 97
Query: 97 TNNML--LVKTENFLPTFQLKVLELANCSLNVVPTFLLHQYDLKYLDLSLNNLVGDF--P 152
+ N L + F QLK L L+ L + ++ + L L G+ P
Sbjct: 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDP 157
Query: 153 SWMLQNNTK-LEVLFLTNNSF----------TGNLRLPNTKHDFLHHLDASSNNFIGTLP 201
+ NT+ L ++F TN F NL L N K D + F+
Sbjct: 158 EGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVL---EDNKCSYFL---- 210
Query: 202 QDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLW 261
+IL KL +N NI ++ ++ L + S L G
Sbjct: 211 ----SILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQ---- 262
Query: 262 FLDLSDNNFYGQFFSKDLNLTQM---------EFLY-------LENNKFSGKIEEGLLNS 305
LD D ++ G K L++ Q+ ++Y ++N SG +L
Sbjct: 263 -LDFRDFDYSGTSL-KALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCP 320
Query: 306 TKL---YQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLE--GNIPVQLLNHRTLKLLS 360
+K+ LD S+N L+ + G+ + LE L++ N L+ I ++L+ L
Sbjct: 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD 380
Query: 361 VSENYLS-----GSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRS--SKLMTLDLRGNNL 413
+S+N +S G + + +L SL N S + D +FR ++ LDL N +
Sbjct: 381 ISQNSVSYDEKKGDCSWTKSLLSL-------NMSSNILTDTIFRCLPPRIKVLDLHSNKI 433
Query: 414 EGQIPDQICQLRRLGMMDLSHNRFNGSIP 442
+ IP Q+ +L L ++++ N+ S+P
Sbjct: 434 KS-IPKQVVKLEALQELNVASNQLK-SVP 460
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 9/97 (9%)
Query: 514 SNLNYMVGLDLSCNELTGNVPSEIGDL---QKIRGLNLSHNCLSGSIPRSFSNLQMIESL 570
+ + + LD+S N ++ + + GD + + LN+S N L+ +I R I+ L
Sbjct: 371 TQMKSLQQLDISQNSVSYD--EKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVL 426
Query: 571 DLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD 607
DL +N++ IP Q+++L L NV+ N L +PD
Sbjct: 427 DLHSNKIKS-IPKQVVKLEALQELNVASNQLKS-VPD 461
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 80/182 (43%), Gaps = 34/182 (18%)
Query: 3 GSLTNLYIFLTGLANLTILQVLDLSGS---SSNC----LKYLSHLKVLDISHNQXXXXXX 55
G++ L + L L LQ LDLS S +S+C LK L HL+ L++S+N+
Sbjct: 333 GNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLED 392
Query: 56 XXXXXXXXXEYLDLSYNNFEGPCPLSSLANHSKLEVL-----LLSSTNNMLLVKTENFLP 110
E LD+++ + P S N L VL LL ++N LL ++
Sbjct: 393 QAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRH 452
Query: 111 ------TFQ---------------LKVLELANCSLNVVPTFLLHQ-YDLKYLDLSLNNLV 148
+FQ L++L L++C+L + H ++ +LDLS N+L
Sbjct: 453 LNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLT 512
Query: 149 GD 150
GD
Sbjct: 513 GD 514
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 76/171 (44%), Gaps = 10/171 (5%)
Query: 175 NLRLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKE 234
NL+L N +H L +L+ S N +G Q +L +LD++ H P S +
Sbjct: 368 NLQLKNLRH--LQYLNLSYNEPLGLEDQAFKEC-PQLELLDVAFTHLHVKAPHSPFQNLH 424
Query: 235 LI-ILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQM----EFLYL 289
L+ +L+LS + + + L G L L+L N+F SK NL QM E L L
Sbjct: 425 LLRVLNLS-HCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGSISKT-NLLQMVGSLEILIL 482
Query: 290 ENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNN 340
+ ++ + LD+SHN L+G + + L + + SNN
Sbjct: 483 SSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGLYLNMASNN 533
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 54/104 (51%), Gaps = 2/104 (1%)
Query: 287 LYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNI 346
LYL+ N+F+ + + L N L +D+S+N +S N + L L++S N L
Sbjct: 36 LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 347 PVQLLNHRTLKLLSVSENYLSGSMTSSFN-LSSLKHLYVQKNAL 389
P ++L+LLS+ N +S +FN LS+L HL + N L
Sbjct: 95 PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 2/109 (1%)
Query: 495 PQQVKVEFVTKNRYELYNG--SNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNC 552
P+ V ++ N++ L SN ++ +DLS N ++ ++ ++ L LS+N
Sbjct: 30 PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89
Query: 553 LSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNL 601
L PR+F L+ + L L N +S +L+ LS+ + N L
Sbjct: 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 533 VPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLS 592
VP E+ + + + ++LS+N +S +SFSN+ + +L LS NRL P L L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 593 NFNVSYNNLSGLIPD 607
++ N++S ++P+
Sbjct: 106 LLSLHGNDIS-VVPE 119
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 73/185 (39%), Gaps = 24/185 (12%)
Query: 104 KTENFLPTFQLKVLELANCSLNVVPTFLLHQYD--------------------LKYLDLS 143
+ ++F F + LEL NC PT L L++LDLS
Sbjct: 296 RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLS 355
Query: 144 LNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNT--KHDFLHHLDASSNNFIGTLP 201
N L F Q++ L + SF G + + + + L HLD +N
Sbjct: 356 RNGL--SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE 413
Query: 202 QDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLW 261
+ L+ L+ LDIS+ H + L +L ++ N+F E+F T +L
Sbjct: 414 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 473
Query: 262 FLDLS 266
FLDLS
Sbjct: 474 FLDLS 478
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 82/183 (44%), Gaps = 32/183 (17%)
Query: 65 EYLDLSYN--NFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANC 122
E+LDLS N +F+G C S S L+ L LS N ++ + NFL QL+ L+ +
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTS-LKYLDLSF--NGVITMSSNFLGLEQLEHLDFQHS 406
Query: 123 SLNVVPTF--LLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPN 180
+L + F L +L YLD+S + F + + + LEVL + NSF N
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAF-NGIFNGLSSLEVLKMAGNSFQENF---- 461
Query: 181 TKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHL 240
LP D+ T L+ L LD+S E P++ + L +L++
Sbjct: 462 -------------------LP-DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501
Query: 241 SKN 243
+ N
Sbjct: 502 ASN 504
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 514 SNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCL-SGSIPRSFSNLQMIESLDL 572
S+L +V ++ + L N P IG L+ ++ LN++HN + S +P FSNL +E LDL
Sbjct: 100 SSLQKLVAVETNLASLE-NFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156
Query: 573 SNNRL 577
S+N++
Sbjct: 157 SSNKI 161
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 514 SNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCL-SGSIPRSFSNLQMIESLDL 572
S+L +V L+ + L N P IG L+ ++ LN++HN + S +P FSNL +E LDL
Sbjct: 102 SSLQKLVALETNLASLE-NFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 158
Query: 573 SNNRL 577
S+N++
Sbjct: 159 SSNKI 163
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 4/67 (5%)
Query: 514 SNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCL-SGSIPRSFSNLQMIESLDL 572
S+L +V ++ + L N P IG L+ ++ LN++HN + S +P FSNL +E LDL
Sbjct: 100 SSLQKLVAVETNLASLE-NFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156
Query: 573 SNNRLSG 579
S+N++
Sbjct: 157 SSNKIQS 163
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 73/185 (39%), Gaps = 24/185 (12%)
Query: 104 KTENFLPTFQLKVLELANCSLNVVPTFLLHQYD--------------------LKYLDLS 143
+ ++F F + LEL NC PT L L++LDLS
Sbjct: 296 RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLS 355
Query: 144 LNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNT--KHDFLHHLDASSNNFIGTLP 201
N L F Q++ L + SF G + + + + L HLD +N
Sbjct: 356 RNGL--SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE 413
Query: 202 QDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLW 261
+ L+ L+ LDIS+ H + L +L ++ N+F E+F T +L
Sbjct: 414 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 473
Query: 262 FLDLS 266
FLDLS
Sbjct: 474 FLDLS 478
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 514 SNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCL-SGSIPRSFSNLQMIESLDL 572
S+L +V ++ + L N P IG L+ ++ LN++HN + S +P FSNL +E LDL
Sbjct: 124 SSLQKLVAVETNLASLE-NFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 180
Query: 573 SNNRL 577
S+N++
Sbjct: 181 SSNKI 185
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 73/185 (39%), Gaps = 24/185 (12%)
Query: 104 KTENFLPTFQLKVLELANCSLNVVPTFLLHQYD--------------------LKYLDLS 143
+ ++F F + LEL NC PT L L++LDLS
Sbjct: 320 RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLS 379
Query: 144 LNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNT--KHDFLHHLDASSNNFIGTLP 201
N L F Q++ L + SF G + + + + L HLD +N
Sbjct: 380 RNGL--SFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE 437
Query: 202 QDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLW 261
+ L+ L+ LDIS+ H + L +L ++ N+F E+F T +L
Sbjct: 438 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 497
Query: 262 FLDLS 266
FLDLS
Sbjct: 498 FLDLS 502
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 514 SNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCL-SGSIPRSFSNLQMIESLDL 572
S+L +V ++ + L N P IG L+ ++ LN++HN + S +P FSNL +E LDL
Sbjct: 100 SSLQKLVAVETNLASLE-NFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156
Query: 573 SNNRL 577
S+N++
Sbjct: 157 SSNKI 161
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 514 SNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCL-SGSIPRSFSNLQMIESLDL 572
S+L +V ++ + L N P IG L+ ++ LN++HN + S +P FSNL +E LDL
Sbjct: 102 SSLQKLVAVETNLASLE-NFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 158
Query: 573 SNNRL 577
S+N++
Sbjct: 159 SSNKI 163
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 514 SNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCL-SGSIPRSFSNLQMIESLDL 572
S+L +V ++ + L N P IG L+ ++ LN++HN + S +P FSNL +E LDL
Sbjct: 101 SSLQKLVAVETNLASLE-NFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 157
Query: 573 SNNRL 577
S+N++
Sbjct: 158 SSNKI 162
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 514 SNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCL-SGSIPRSFSNLQMIESLDL 572
S+L +V ++ + L N P IG L+ ++ LN++HN + S +P FSNL +E LDL
Sbjct: 101 SSLQKLVAVETNLASLE-NFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 157
Query: 573 SNNRL 577
S+N++
Sbjct: 158 SSNKI 162
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 53/160 (33%), Positives = 73/160 (45%), Gaps = 28/160 (17%)
Query: 182 KHDF--LHHLDASS--NNFIGTLPQDMGTILKKLLVLDISNNHF---EGNIPSSVGEMK- 233
K DF L HL A NN I + + + L+KL L IS NH N+PSS+ E++
Sbjct: 71 KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRI 130
Query: 234 -ELIILHLSKNNFS--------EDFSTP-----FLTGC---ISLWFLDLSDNNFYGQFFS 276
+ I + K FS E P F G + L +L +S+ G
Sbjct: 131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG--IP 188
Query: 277 KDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHN 316
KDL T E L+L++NK E LL +KLY+L + HN
Sbjct: 189 KDLPETLNE-LHLDHNKIQAIELEDLLRYSKLYRLGLGHN 227
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 97/227 (42%), Gaps = 18/227 (7%)
Query: 193 SNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTP 252
NN I L +D L+ L L + NN + +++L L++SKN+ E P
Sbjct: 62 QNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE--IPP 119
Query: 253 FLTGCISLWFLDLSDNNFY----GQFFS-KDLNLTQMEFLYLENNKFSGKIEEGLLNSTK 307
L SL L + DN G F +++N +M LEN+ F E G + K
Sbjct: 120 NLPS--SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGF----EPGAFDGLK 173
Query: 308 LYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLS 367
L L IS L+G IP + L L + +N ++ LL + L L + N +
Sbjct: 174 LNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR 230
Query: 368 GSMTSSFN-LSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNL 413
S + L +L+ L++ N LS +P L L + L NN+
Sbjct: 231 MIENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNI 276
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 35.8 bits (81), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 80/188 (42%), Gaps = 37/188 (19%)
Query: 140 LDLSLNNLVGDFPSWMLQNNTKLEVLFLTNN-----SFTGNLRLPNTKHDFLHHLDASSN 194
LDLS NNL W T L L L++N S + +PN L +LD SSN
Sbjct: 44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPN-----LRYLDLSSN 98
Query: 195 NFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFL 254
+ + TL + + + L+ L VL + NNH ++ +M +L L+LS+N S F +
Sbjct: 99 H-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELI 156
Query: 255 T---GCISLWFLDLSDNNFYGQFFSKDLNLTQMEF--------LYLENNKFSGKIEEGLL 303
L LDLS N K L LT ++ LYL NN
Sbjct: 157 KDGNKLPKLMLLDLSSNKL------KKLPLTDLQKLPAWVKNGLYLHNNPLEC------- 203
Query: 304 NSTKLYQL 311
KLYQL
Sbjct: 204 -DCKLYQL 210
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 27/158 (17%)
Query: 67 LDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNV 126
LDLS+NN + + L LLLS N++ + +E F+P L+ L+L++ L+
Sbjct: 44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSH-NHLNFISSEAFVPVPNLRYLDLSSNHLHT 102
Query: 127 VPTFLLHQYDLKYLDLSL--NNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKHD 184
+ FL DL+ L++ L NN + ++ +L+ L+L+ N +
Sbjct: 103 LDEFLFS--DLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS----------- 149
Query: 185 FLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFE 222
F L +D G L KL++LD+S+N +
Sbjct: 150 ----------RFPVELIKD-GNKLPKLMLLDLSSNKLK 176
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 56/243 (23%), Positives = 98/243 (40%), Gaps = 32/243 (13%)
Query: 124 LNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLRLPNTKH 183
L VPT + +L N + P+ Q+ L +L+L +N+ G
Sbjct: 22 LQAVPTGIPASSQRIFLH---GNRISYVPAASFQSCRNLTILWLHSNALAG--------- 69
Query: 184 DFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNN-HFEGNIPSSVGEMKELIILHLSK 242
+DA++ F G T+L++L D+S+N P++ + L LHL +
Sbjct: 70 -----IDAAA--FTGL------TLLEQL---DLSDNAQLRVVDPTTFRGLGHLHTLHLDR 113
Query: 243 NNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGL 302
E G +L +L L DNN + +L + L+L N+ E
Sbjct: 114 CGLQE-LGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAF 172
Query: 303 LNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNH-RTLKLLSV 361
L +L + N ++ PH + L L + N L +P ++L R+L+ L +
Sbjct: 173 RGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLS-MLPAEVLVPLRSLQYLRL 231
Query: 362 SEN 364
++N
Sbjct: 232 NDN 234
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 3/139 (2%)
Query: 264 DLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIP 323
DLS + + S + T +E L L N+ + + T L +L++S NFL
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS 340
Query: 324 HWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFN-LSSLKHL 382
N LE+L +S N + L LK L++ N L F+ L+SL+ +
Sbjct: 341 RMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKI 400
Query: 383 YVQKNA--LSGPIPDMLFR 399
++ N S P D L R
Sbjct: 401 WLHTNPWDCSCPRIDYLSR 419
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 93/401 (23%), Positives = 135/401 (33%), Gaps = 87/401 (21%)
Query: 214 LDISNNHFEGNIPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQ 273
L I NN F G + LIIL L N F + T G +L L L+ N G
Sbjct: 68 LVIRNNTFRG--------LSSLIILKLDYNQFLQ-LETGAFNGLANLEVLTLTQCNLDGA 118
Query: 274 FFSKDL--NLTQMEFLYLENNKFSGKIEEG--LLNSTKLYQLDISHNFLSGHIPHWMGNF 329
S + LT +E L L +N KI+ LN + + LD++ N + + NF
Sbjct: 119 VLSGNFFKPLTSLEMLVLRDNNIK-KIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNF 177
Query: 330 SNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNAL 389
H TL LS S L + ++
Sbjct: 178 QG--------------------KHFTLLRLS------------SITLQDMNEYWLGWEKC 205
Query: 390 SGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIPSCFTNML 449
P F+++ + TLDL GN G + RF +I T +
Sbjct: 206 GNP-----FKNTSITTLDLSGN----------------GFKESMAKRFFDAIAG--TKIQ 242
Query: 450 QWTIENVDLFG---GELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFTSPQQVKVEFVTKN 506
+ N G G + P F + G + ++ K +F + V F
Sbjct: 243 SLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTD-- 300
Query: 507 RYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQM 566
+ L L+ NE+ + L + LNLS N L R F NL
Sbjct: 301 ------------LEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK 348
Query: 567 IESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPD 607
+E LDLS N + + L L + N L +PD
Sbjct: 349 LEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPD 388
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 73/162 (45%), Gaps = 6/162 (3%)
Query: 281 LTQMEFLYLENN--KFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMS 338
LTQ+ L L +N F G + +T L LD+S N + +++G LE L
Sbjct: 51 LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQ 109
Query: 339 NNCLEGNIPVQL-LNHRTLKLLSVSENYLSGSMTSSFN-LSSLKHLYVQKNALSGP-IPD 395
++ L+ + L+ R L L +S + + FN LSSL+ L + N+ +PD
Sbjct: 110 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 169
Query: 396 MLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRF 437
+ L LDL LE P L L ++++SHN F
Sbjct: 170 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 37/82 (45%)
Query: 186 LHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNNF 245
L HLD +N + L+ L+ LDIS+ H + L +L ++ N+F
Sbjct: 103 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162
Query: 246 SEDFSTPFLTGCISLWFLDLSD 267
E+F T +L FLDLS
Sbjct: 163 QENFLPDIFTELRNLTFLDLSQ 184
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 78/164 (47%), Gaps = 15/164 (9%)
Query: 281 LTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNN 340
LT ++ L +N+ + + L N T L +LDIS N +S + +NLE L+ +NN
Sbjct: 150 LTSLQQLSFSSNQVTDL--KPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNN 205
Query: 341 CLEGNIPVQLLNHRTLKLLSVSENYLS--GSMTSSFNLSSLKHLYVQKNALSGPIPDMLF 398
+ P+ +L + L LS++ N L G++ S L++L L + N +S P L
Sbjct: 206 QISDITPLGILTN--LDELSLNGNQLKDIGTLAS---LTNLTDLDLANNQISNLAP--LS 258
Query: 399 RSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIP 442
+KL L L N + P + L L ++L+ N+ P
Sbjct: 259 GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 300
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 10/113 (8%)
Query: 510 LYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIES 569
L N +NLN L+LS N ++ S + L ++ L+ S N ++ P +NL +E
Sbjct: 125 LKNLTNLNR---LELSSNTISD--ISALSGLTSLQQLSFSSNQVTDLKP--LANLTTLER 177
Query: 570 LDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDESSYRGN 622
LD+S+N++S + L +L L + + N +S + P G + DE S GN
Sbjct: 178 LDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGN 227
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 78/164 (47%), Gaps = 15/164 (9%)
Query: 281 LTQMEFLYLENNKFSGKIEEGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNN 340
LT ++ L +N+ + + L N T L +LDIS N +S + +NLE L+ +NN
Sbjct: 150 LTSLQQLNFSSNQVTDL--KPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNN 205
Query: 341 CLEGNIPVQLLNHRTLKLLSVSENYLS--GSMTSSFNLSSLKHLYVQKNALSGPIPDMLF 398
+ P+ +L + L LS++ N L G++ S L++L L + N +S P L
Sbjct: 206 QISDITPLGILTN--LDELSLNGNQLKDIGTLAS---LTNLTDLDLANNQISNLAP--LS 258
Query: 399 RSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIP 442
+KL L L N + P + L L ++L+ N+ P
Sbjct: 259 GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 300
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 10/113 (8%)
Query: 510 LYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIES 569
L N +NLN L+LS N ++ S + L ++ LN S N ++ P +NL +E
Sbjct: 125 LKNLTNLNR---LELSSNTISD--ISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLER 177
Query: 570 LDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDESSYRGN 622
LD+S+N++S + L +L L + + N +S + P G + DE S GN
Sbjct: 178 LDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGN 227
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 91/211 (43%), Gaps = 23/211 (10%)
Query: 195 NFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNN---------- 244
N + +LP+ + KL L +SNN+ E + L L LS N
Sbjct: 127 NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIP 186
Query: 245 --FSEDFSTPFLTGC---ISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIE 299
F + S L+ I++ LD S N+ ++ LT L L++N +
Sbjct: 187 SLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELT---ILKLQHNNLTDT-- 241
Query: 300 EGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEG-NIPVQLLNHRTLKL 358
LLN L ++D+S+N L + H LE L +SNN L N+ Q + TLK+
Sbjct: 242 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPI--PTLKV 299
Query: 359 LSVSENYLSGSMTSSFNLSSLKHLYVQKNAL 389
L +S N+L + L++LY+ N++
Sbjct: 300 LDLSHNHLLHVERNQPQFDRLENLYLDHNSI 330
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 83/209 (39%), Gaps = 41/209 (19%)
Query: 375 NLSSLKHLYVQKNALSGPIPDMLFRSS-KLMTLDLRGNNLEGQIPDQICQLRRLGMMDLS 433
N+ L L +++N LS +P +F ++ KL TL + NNLE D L + LS
Sbjct: 115 NVPLLTVLVLERNDLSS-LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 173
Query: 434 HNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFPPLGFCYIGTYYNSTLDLEVCKRDMFT 493
NR L +LS+ P L + STL + + ++
Sbjct: 174 SNR---------------------LTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDA 212
Query: 494 SPQQVKVEFVTKNRYELYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGL---NLSH 550
S + V + V ++L+ +L N ++ L GL +LS+
Sbjct: 213 SHNSINV---------------VRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSY 257
Query: 551 NCLSGSIPRSFSNLQMIESLDLSNNRLSG 579
N L + F +Q +E L +SNNRL
Sbjct: 258 NELEKIMYHPFVKMQRLERLYISNNRLVA 286
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 68/143 (47%), Gaps = 13/143 (9%)
Query: 302 LLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSV 361
L N T L +LDIS N +S + +NLE L+ +NN + P+ +L + L LS+
Sbjct: 168 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTN--LDELSL 223
Query: 362 SENYLS--GSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPD 419
+ N L G++ S L++L L + N +S P L +KL L L N + P
Sbjct: 224 NGNQLKDIGTLAS---LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP- 277
Query: 420 QICQLRRLGMMDLSHNRFNGSIP 442
+ L L ++L+ N+ P
Sbjct: 278 -LAGLTALTNLELNENQLEDISP 299
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 67/138 (48%), Gaps = 13/138 (9%)
Query: 302 LLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSV 361
L N T L +LDIS N +S + +NLE L+ +NN + P+ +L + L LS+
Sbjct: 173 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTN--LDELSL 228
Query: 362 SENYLS--GSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPD 419
+ N L G++ S L++L L + N +S P L +KL L L N + P
Sbjct: 229 NGNQLKDIGTLAS---LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP- 282
Query: 420 QICQLRRLGMMDLSHNRF 437
+ L L ++L+ N+
Sbjct: 283 -LAGLTALTNLELNENQL 299
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 91/211 (43%), Gaps = 23/211 (10%)
Query: 195 NFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELIILHLSKNN---------- 244
N + +LP+ + KL L +SNN+ E + L L LS N
Sbjct: 133 NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIP 192
Query: 245 --FSEDFSTPFLTGC---ISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIE 299
F + S L+ I++ LD S N+ ++ LT L L++N +
Sbjct: 193 SLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELT---ILKLQHNNLTDTA- 248
Query: 300 EGLLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEG-NIPVQLLNHRTLKL 358
LLN L ++D+S+N L + H LE L +SNN L N+ Q + TLK+
Sbjct: 249 -WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIP--TLKV 305
Query: 359 LSVSENYLSGSMTSSFNLSSLKHLYVQKNAL 389
L +S N+L + L++LY+ N++
Sbjct: 306 LDLSHNHLLHVERNQPQFDRLENLYLDHNSI 336
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 81/202 (40%), Gaps = 14/202 (6%)
Query: 121 NCS---LNVVPTFLLHQYDLKYLDLSLNNLVGDFPSWMLQNNTKLEVLFLTNNSFTGNLR 177
+CS L +P+ + D K LDL N L PS TKL +L+L +N
Sbjct: 22 DCSSKKLTAIPSNI--PADTKKLDLQSNKL-SSLPSKAFHRLTKLRLLYLNDNKLQ---T 75
Query: 178 LPNTKHDFLHHLDA--SSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKEL 235
LP L +L+ ++N + LP + L L L + N + P + +L
Sbjct: 76 LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL 135
Query: 236 IILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFS 295
L L N + SL L L +N LT+++ L L+NN+
Sbjct: 136 TYLSLGYNEL-QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194
Query: 296 GKIEEGLLNS-TKLYQLDISHN 316
++ EG +S KL L + N
Sbjct: 195 -RVPEGAFDSLEKLKMLQLQEN 215
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 55/122 (45%), Gaps = 14/122 (11%)
Query: 333 EILLMSNNCLEGNIPVQLLNHRTLKLLSVSE-----NYLSGSMTSSFNLSSLKHLYVQKN 387
+I L +N E N LL H+ L S+ E N + S ++ L H N
Sbjct: 177 KIELFANGKDEAN--QALLQHKKLSQYSIDEDDDIENRMVMPKDSKYD-DQLWHALDLSN 233
Query: 388 ALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHNRFNGSIP----S 443
I +F+ L L L GN+L ++P +I L L ++DLSHNR S+P S
Sbjct: 234 LQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291
Query: 444 CF 445
CF
Sbjct: 292 CF 293
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Query: 375 NLSSLKHLYVQKNALSGPIPDMLFRS-SKLMTLDLRGNNLEGQIPDQICQ-LRRLGMMDL 432
L++L++LY+Q NAL +PD FR L L L GN + +P++ + L L + L
Sbjct: 126 GLAALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLL 183
Query: 433 SHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFP 467
NR P F ++ + + + LF LS P
Sbjct: 184 HQNRVAHVHPHAFRDLGR--LMTLYLFANNLSALP 216
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 81/213 (38%), Gaps = 5/213 (2%)
Query: 225 IPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQM 284
+P + + I LH N S + F C +L L L N + L +
Sbjct: 25 VPVGIPAASQRIFLH--GNRISHVPAASF-RACRNLTILWLHSNVLARIDAAAFTGLALL 81
Query: 285 EFLYLENNKFSGKIEEGLLNS-TKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLE 343
E L L +N ++ + +L+ L + L P + L+ L + +N L+
Sbjct: 82 EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 141
Query: 344 GNIPVQLLNHRTLKLLSVSENYLSGSMTSSFN-LSSLKHLYVQKNALSGPIPDMLFRSSK 402
+ L L + N +S +F L SL L + +N ++ P +
Sbjct: 142 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 201
Query: 403 LMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHN 435
LMTL L NNL + + LR L + L+ N
Sbjct: 202 LMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Query: 375 NLSSLKHLYVQKNALSGPIPDMLFRS-SKLMTLDLRGNNLEGQIPDQICQ-LRRLGMMDL 432
L++L++LY+Q NAL +PD FR L L L GN + +P++ + L L + L
Sbjct: 127 GLAALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLL 184
Query: 433 SHNRFNGSIPSCFTNMLQWTIENVDLFGGELSIFP 467
NR P F ++ + + + LF LS P
Sbjct: 185 HQNRVAHVHPHAFRDLGR--LMTLYLFANNLSALP 217
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 81/213 (38%), Gaps = 5/213 (2%)
Query: 225 IPSSVGEMKELIILHLSKNNFSEDFSTPFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQM 284
+P + + I LH N S + F C +L L L N + L +
Sbjct: 26 VPVGIPAASQRIFLH--GNRISHVPAASF-RACRNLTILWLHSNVLARIDAAAFTGLALL 82
Query: 285 EFLYLENNKFSGKIEEGLLNS-TKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLE 343
E L L +N ++ + +L+ L + L P + L+ L + +N L+
Sbjct: 83 EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142
Query: 344 GNIPVQLLNHRTLKLLSVSENYLSGSMTSSFN-LSSLKHLYVQKNALSGPIPDMLFRSSK 402
+ L L + N +S +F L SL L + +N ++ P +
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202
Query: 403 LMTLDLRGNNLEGQIPDQICQLRRLGMMDLSHN 435
LMTL L NNL + + LR L + L+ N
Sbjct: 203 LMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 67/268 (25%), Positives = 119/268 (44%), Gaps = 61/268 (22%)
Query: 15 LANLTILQVLDLSG---SSSNC----LKYLSHLKVLDISHNQXXXXXXXXXXXXXXXEYL 67
L NL L+ LDLS +S+C L+ LSHL+ L++S+N E L
Sbjct: 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN----------------EPL 389
Query: 68 DLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQ----LKVLELANCS 123
L F+ CP +LE+L L+ T +K ++ FQ LKVL L++
Sbjct: 390 SLKTEAFK-ECP--------QLELLDLAFTR----LKVKDAQSPFQNLHLLKVLNLSHSL 436
Query: 124 LNVVPTFLLHQY-DLKYLDLSLNNLVGDFPSWMLQNNT------KLEVLFLTNNSFTGNL 176
L++ L L++L+L N+ FP +Q +LE+L L+ +
Sbjct: 437 LDISSEQLFDGLPALQHLNLQGNH----FPKGNIQKTNSLQTLGRLEILVLSFCDLSSID 492
Query: 177 RLPNTKHDFLHHLDASSNNFIGTLPQDMGTILKKLLVLDISNNHFEGNIPSSVGEMKELI 236
+ T ++H+D S N + + + + K + L++++NH +PS + + +
Sbjct: 493 QHAFTSLKMMNHVDLSHNRLTSSSIEALSHL--KGIYLNLASNHISIILPSLLPILSQQR 550
Query: 237 ILHLSKNNFSEDFSTPFLTGCISLWFLD 264
++L +N P C +++FL+
Sbjct: 551 TINLRQN--------PLDCTCSNIYFLE 570
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 71/297 (23%), Positives = 111/297 (37%), Gaps = 39/297 (13%)
Query: 312 DISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSMT 371
D SH L+ HIP + SN+ +L +++N L P + L +L N +S
Sbjct: 10 DCSHLKLT-HIPDDLP--SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEP 66
Query: 372 SSFN-LSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLEGQIPDQICQLRRLGMM 430
L LK L +Q N LS + L LDL N++ + + L +
Sbjct: 67 ELCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKL 126
Query: 431 DLSHNRFNGS--------------------IPSCFTNMLQW----TIENVDLFGGELSIF 466
DLSHN + + I + + L++ ++ +DL L F
Sbjct: 127 DLSHNGLSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEF 186
Query: 467 PPLGFCYIGTYY---------NSTLDLEVCKRDMFTSPQQVKVE--FVTKNRYELYNGSN 515
P F IG + N L ++C TS Q + + + ++G
Sbjct: 187 SPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLK 246
Query: 516 LNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDL 572
+ LDLS N L L +R L+L +N + PRSF L + L L
Sbjct: 247 WTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSL 303
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 230 GEMKELIILHLSKNNFSEDFSTPFLTGCI-SLWFLDLSDNNFYGQFFSKDLNLTQMEFLY 288
G + L L LS N S P L + +L LD+S N L +++ LY
Sbjct: 74 GTLPVLGTLDLSHNQLQ---SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 289 LENNKFSGKIEEGLLNST-KLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCL 342
L+ N+ + GLL T KL +L +++N L+ + NL+ LL+ N L
Sbjct: 131 LKGNELK-TLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 513 GSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDL 572
G L + LD+S N LT + L +++ L L N L P + +E L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 573 SNNRLSGQIPAQLIELNFLSNFNV 596
+NN+L+ ++PA L LN L N +
Sbjct: 156 ANNQLT-ELPAGL--LNGLENLDT 176
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 230 GEMKELIILHLSKNNFSEDFSTPFLTGCI-SLWFLDLSDNNFYGQFFSKDLNLTQMEFLY 288
G + L L LS N S P L + +L LD+S N L +++ LY
Sbjct: 74 GTLPVLGTLDLSHNQLQ---SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 289 LENNKFSGKIEEGLLNST-KLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCL 342
L+ N+ + GLL T KL +L +++N L+ + NL+ LL+ N L
Sbjct: 131 LKGNELK-TLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 513 GSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDL 572
G L + LD+S N LT + L +++ L L N L P + +E L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 573 SNNRLSGQIPAQLIELNFLSNFNV 596
+NN+L+ ++PA L LN L N +
Sbjct: 156 ANNQLT-ELPAGL--LNGLENLDT 176
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 230 GEMKELIILHLSKNNFSEDFSTPFLTGCI-SLWFLDLSDNNFYGQFFSKDLNLTQMEFLY 288
G + L L LS N S P L + +L LD+S N L +++ LY
Sbjct: 74 GTLPVLGTLDLSHNQLQ---SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 289 LENNKFSGKIEEGLLNST-KLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCL 342
L+ N+ + GLL T KL +L +++N L+ + NL+ LL+ N L
Sbjct: 131 LKGNELK-TLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 513 GSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDL 572
G L + LD+S N LT + L +++ L L N L P + +E L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 573 SNNRLSGQIPAQLIELNFLSNFNV 596
+NN+L+ ++PA L LN L N +
Sbjct: 156 ANNQLT-ELPAGL--LNGLENLDT 176
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 10/113 (8%)
Query: 510 LYNGSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIES 569
L N +NLN L+LS N ++ S + L ++ L+ S N ++ P +NL +E
Sbjct: 125 LKNLTNLNR---LELSSNTISD--ISALSGLTSLQQLSFSSNQVTDLKP--LANLTTLER 177
Query: 570 LDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLSGLIPDKGQYSTFDESSYRGN 622
LD+S+N++S + L +L L + + N +S + P G + DE S GN
Sbjct: 178 LDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGN 227
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 230 GEMKELIILHLSKNNFSEDFSTPFLTGCI-SLWFLDLSDNNFYGQFFSKDLNLTQMEFLY 288
G + L L LS N S P L + +L LD+S N L +++ LY
Sbjct: 74 GTLPVLGTLDLSHNQLQ---SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 289 LENNKFSGKIEEGLLNST-KLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCL 342
L+ N+ + GLL T KL +L +++N L+ + NL+ LL+ N L
Sbjct: 131 LKGNELK-TLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 513 GSNLNYMVGLDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDL 572
G L + LD+S N LT + L +++ L L N L P + +E L L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 573 SNNRLSGQIPAQLIELNFLSNFNV 596
+NN+L+ ++PA L LN L N +
Sbjct: 156 ANNQLT-ELPAGL--LNGLENLDT 176
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 230 GEMKELIILHLSKNNFSEDFSTPFLTGCI-SLWFLDLSDNNFYGQFFSKDLNLTQMEFLY 288
G + L L LS N S P L + +L LD+S N L +++ LY
Sbjct: 74 GTLPVLGTLDLSHNQLQ---SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 289 LENNKFSGKIEEGLLNST-KLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCL 342
L+ N+ + GLL T KL +L +++N L+ + NL+ LL+ N L
Sbjct: 131 LKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 302 LLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSV 361
L+ T+L QL++ L+ G L L +S+N L+ ++P+ L +L V
Sbjct: 51 LMPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV 107
Query: 362 SENYLSG-SMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNL 413
S N L+ + + L L+ LY++ N L P +L + KL L L NNL
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 60/139 (43%), Gaps = 19/139 (13%)
Query: 1 YSGSLTNL--YIFLTGL----ANLTILQVLDLSGSSSNCLKYLSHLKVLDISHNQXXXXX 54
Y+ SL L Y LT L A LT LQV G+ L L LD+SHNQ
Sbjct: 44 YTFSLATLMPYTRLTQLNLDRAELTKLQV---DGT-------LPVLGTLDLSHNQLQSLP 93
Query: 55 XXXXXXXXXXEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQL 114
LD+S+N PL +L +L+ L L N + + PT +L
Sbjct: 94 LLGQTLPALT-VLDVSFNRLTS-LPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKL 150
Query: 115 KVLELANCSLNVVPTFLLH 133
+ L LAN +L +P LL+
Sbjct: 151 EKLSLANNNLTELPAGLLN 169
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 230 GEMKELIILHLSKNNFSEDFSTPFLTGCI-SLWFLDLSDNNFYGQFFSKDLNLTQMEFLY 288
G + L L LS N S P L + +L LD+S N L +++ LY
Sbjct: 74 GTLPVLGTLDLSHNQLQ---SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 289 LENNKFSGKIEEGLLNST-KLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCL 342
L+ N+ + GLL T KL +L +++N L+ + NL+ LL+ N L
Sbjct: 131 LKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 302 LLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSV 361
L+ T+L QL++ L+ G L L +S+N L+ ++P+ L +L V
Sbjct: 51 LMPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV 107
Query: 362 SENYLSG-SMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNL 413
S N L+ + + L L+ LY++ N L P +L + KL L L NNL
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 60/139 (43%), Gaps = 19/139 (13%)
Query: 1 YSGSLTNL--YIFLTGL----ANLTILQVLDLSGSSSNCLKYLSHLKVLDISHNQXXXXX 54
Y+ SL L Y LT L A LT LQV G+ L L LD+SHNQ
Sbjct: 44 YTFSLATLMPYTRLTQLNLDRAELTKLQV---DGT-------LPVLGTLDLSHNQLQSLP 93
Query: 55 XXXXXXXXXXEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQL 114
LD+S+N PL +L +L+ L L N + + PT +L
Sbjct: 94 LLGQTLPALT-VLDVSFNRLTS-LPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKL 150
Query: 115 KVLELANCSLNVVPTFLLH 133
+ L LAN +L +P LL+
Sbjct: 151 EKLSLANNNLTELPAGLLN 169
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 230 GEMKELIILHLSKNNFSEDFSTPFLTGCI-SLWFLDLSDNNFYGQFFSKDLNLTQMEFLY 288
G + L L LS N S P L + +L LD+S N L +++ LY
Sbjct: 75 GTLPVLGTLDLSHNQLQ---SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 131
Query: 289 LENNKFSGKIEEGLLNST-KLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCL 342
L+ N+ + GLL T KL +L +++N L+ + NL+ LL+ N L
Sbjct: 132 LKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 185
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 230 GEMKELIILHLSKNNFSEDFSTPFLTGCI-SLWFLDLSDNNFYGQFFSKDLNLTQMEFLY 288
G + L L LS N S P L + +L LD+S N L +++ LY
Sbjct: 74 GTLPVLGTLDLSHNQLQ---SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 289 LENNKFSGKIEEGLLNST-KLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCL 342
L+ N+ + GLL T KL +L +++N L+ + NL+ LL+ N L
Sbjct: 131 LKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 302 LLNSTKLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSV 361
L+ T+L QL++ L+ G L L +S+N L+ ++P+ L +L V
Sbjct: 51 LMPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV 107
Query: 362 SENYLSG-SMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNL 413
S N L+ + + L L+ LY++ N L P +L + KL L L NNL
Sbjct: 108 SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 60/139 (43%), Gaps = 19/139 (13%)
Query: 1 YSGSLTNL--YIFLTGL----ANLTILQVLDLSGSSSNCLKYLSHLKVLDISHNQXXXXX 54
Y+ SL L Y LT L A LT LQV G+ L L LD+SHNQ
Sbjct: 44 YTFSLATLMPYTRLTQLNLDRAELTKLQV---DGT-------LPVLGTLDLSHNQLQSLP 93
Query: 55 XXXXXXXXXXEYLDLSYNNFEGPCPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQL 114
LD+S+N PL +L +L+ L L N + + PT +L
Sbjct: 94 LLGQTLPALT-VLDVSFNRLTS-LPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKL 150
Query: 115 KVLELANCSLNVVPTFLLH 133
+ L LAN +L +P LL+
Sbjct: 151 EKLSLANNNLTELPAGLLN 169
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 230 GEMKELIILHLSKNNFSEDFSTPFLTGCI-SLWFLDLSDNNFYGQFFSKDLNLTQMEFLY 288
G + L L LS N S P L + +L LD+S N L +++ LY
Sbjct: 74 GTLPVLGTLDLSHNQLQ---SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 289 LENNKFSGKIEEGLLNST-KLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCL 342
L+ N+ + GLL T KL +L +++N L+ + NL+ LL+ N L
Sbjct: 131 LKGNELK-TLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 9/104 (8%)
Query: 543 IRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLS 602
I LNL+HN L +F+ + SLD+ N +S P +L L N+ +N LS
Sbjct: 32 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 91
Query: 603 GLIPDKGQYSTFDESSYRGNLYLCGPTINKSCNSAEETPAIKSK 646
L DK TF + L+L +I K N+ P +K K
Sbjct: 92 QL-SDK----TFAFCTNLTELHLMSNSIQKIKNN----PFVKQK 126
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 66/148 (44%), Gaps = 10/148 (6%)
Query: 7 NLYIFLTGLANLTILQV-LDLSGSSSNCLKYLSHLKVLDISHNQXXXXXXXXXXXXXXXE 65
N + + L L + +V L SS + + L +L +LD+S+N E
Sbjct: 453 NSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLE 512
Query: 66 YLDLSYNNF------EGP-CPLSSLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLE 118
LDL +NN P P+ L S L +L L S N + E F F+LK+++
Sbjct: 513 ILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES-NGFDEIPVEVFKDLFELKIID 571
Query: 119 LANCSLNVVPTFLL-HQYDLKYLDLSLN 145
L +LN +P + +Q LK L+L N
Sbjct: 572 LGLNNLNTLPASVFNNQVSLKSLNLQKN 599
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 9/104 (8%)
Query: 543 IRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLS 602
I LNL+HN L +F+ + SLD+ N +S P +L L N+ +N LS
Sbjct: 27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86
Query: 603 GLIPDKGQYSTFDESSYRGNLYLCGPTINKSCNSAEETPAIKSK 646
L DK TF + L+L +I K N+ P +K K
Sbjct: 87 QL-SDK----TFAFCTNLTELHLMSNSIQKIKNN----PFVKQK 121
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 9/125 (7%)
Query: 29 SSSNCLKYLSHLKVLDISHNQXXXXXXXXXXXXXXXEYLDLSYNNF------EGP-CPLS 81
SS + + L +L +LD+S+N E LDL +NN P P+
Sbjct: 471 SSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIY 530
Query: 82 SLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLL-HQYDLKYL 140
L S L +L L S N + E F F+LK+++L +LN +P + +Q LK L
Sbjct: 531 FLKGLSHLHILNLES-NGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSL 589
Query: 141 DLSLN 145
+L N
Sbjct: 590 NLQKN 594
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 230 GEMKELIILHLSKNNFSEDFSTPFLTGCI-SLWFLDLSDNNFYGQFFSKDLNLTQMEFLY 288
G + L L LS N S P L + +L LD+S N L +++ LY
Sbjct: 74 GTLPVLGTLDLSHNQLQ---SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130
Query: 289 LENNKFSGKIEEGLLNST-KLYQLDISHNFLSGHIPHWMGNFSNLEILLMSNNCL 342
L+ N+ + GLL T KL +L +++N L+ + NL+ LL+ N L
Sbjct: 131 LKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 9/104 (8%)
Query: 543 IRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIELNFLSNFNVSYNNLS 602
I LNL+HN L +F+ + SLD+ N +S P +L L N+ +N LS
Sbjct: 37 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 96
Query: 603 GLIPDKGQYSTFDESSYRGNLYLCGPTINKSCNSAEETPAIKSK 646
L DK TF + L+L +I K N+ P +K K
Sbjct: 97 QL-SDK----TFAFCTNLTELHLMSNSIQKIKNN----PFVKQK 131
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 9/125 (7%)
Query: 29 SSSNCLKYLSHLKVLDISHNQXXXXXXXXXXXXXXXEYLDLSYNNF------EGP-CPLS 81
SS + + L +L +LD+S+N E LDL +NN P P+
Sbjct: 481 SSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIY 540
Query: 82 SLANHSKLEVLLLSSTNNMLLVKTENFLPTFQLKVLELANCSLNVVPTFLL-HQYDLKYL 140
L S L +L L S N + E F F+LK+++L +LN +P + +Q LK L
Sbjct: 541 FLKGLSHLHILNLES-NGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSL 599
Query: 141 DLSLN 145
+L N
Sbjct: 600 NLQKN 604
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 61/113 (53%), Gaps = 10/113 (8%)
Query: 326 MGNFSNLEILLMSNNCLEGNIPVQLLNHRT-LKLLSVSENYLSGSMTSSFN-LSSLKHLY 383
+ +NL L+++ N L+ ++P + + T LK L + EN L F+ L++L +LY
Sbjct: 81 LKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLY 139
Query: 384 VQKNALSGPIPDMLF-RSSKLMTLDLRGNNLEGQIP----DQICQLRRLGMMD 431
+ N L +P +F + + L LDL N L+ +P D++ QL++L + D
Sbjct: 140 LYHNQLQS-LPKGVFDKLTNLTRLDLDNNQLQS-LPEGVFDKLTQLKQLSLND 190
>pdb|1GTZ|A Chain A, Structure Of Streptomyces Coelicolor Type Ii
Dehydroquinase R23a Mutant In Complex With
Dehydroshikimate
pdb|1GTZ|B Chain B, Structure Of Streptomyces Coelicolor Type Ii
Dehydroquinase R23a Mutant In Complex With
Dehydroshikimate
pdb|1GTZ|C Chain C, Structure Of Streptomyces Coelicolor Type Ii
Dehydroquinase R23a Mutant In Complex With
Dehydroshikimate
pdb|1GTZ|D Chain D, Structure Of Streptomyces Coelicolor Type Ii
Dehydroquinase R23a Mutant In Complex With
Dehydroshikimate
pdb|1GTZ|E Chain E, Structure Of Streptomyces Coelicolor Type Ii
Dehydroquinase R23a Mutant In Complex With
Dehydroshikimate
pdb|1GTZ|F Chain F, Structure Of Streptomyces Coelicolor Type Ii
Dehydroquinase R23a Mutant In Complex With
Dehydroshikimate
pdb|1GTZ|G Chain G, Structure Of Streptomyces Coelicolor Type Ii
Dehydroquinase R23a Mutant In Complex With
Dehydroshikimate
pdb|1GTZ|H Chain H, Structure Of Streptomyces Coelicolor Type Ii
Dehydroquinase R23a Mutant In Complex With
Dehydroshikimate
pdb|1GTZ|I Chain I, Structure Of Streptomyces Coelicolor Type Ii
Dehydroquinase R23a Mutant In Complex With
Dehydroshikimate
pdb|1GTZ|J Chain J, Structure Of Streptomyces Coelicolor Type Ii
Dehydroquinase R23a Mutant In Complex With
Dehydroshikimate
pdb|1GTZ|K Chain K, Structure Of Streptomyces Coelicolor Type Ii
Dehydroquinase R23a Mutant In Complex With
Dehydroshikimate
pdb|1GTZ|L Chain L, Structure Of Streptomyces Coelicolor Type Ii
Dehydroquinase R23a Mutant In Complex With
Dehydroshikimate
Length = 156
Score = 29.6 bits (65), Expect = 6.5, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 16/82 (19%)
Query: 344 GNIPVQLLNHRTLKLLSVSENYLSGSMTSSFNLSSLKHLYVQKNALSGPIPDMLFRSSKL 403
N P+ +LN L LL ++ + GS T L+ ++ L V+ A G
Sbjct: 5 ANAPIMILNGPNLNLLGQAQPEIYGSDT----LADVEALCVKAAAAHGG----------- 49
Query: 404 MTLDLRGNNLEGQIPDQICQLR 425
T+D R +N EG++ D I + R
Sbjct: 50 -TVDFRQSNHEGELVDWIHEAR 70
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 534 PSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIE 587
P +K+R ++LS+N +S P +F L+ + SL L N+++ ++P L E
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFE 101
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 534 PSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQIPAQLIE 587
P +K+R ++LS+N +S P +F L+ + SL L N+++ ++P L E
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFE 101
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 9/125 (7%)
Query: 252 PFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTK-LYQ 310
PF C L + SD + KDL L L+NNK + +I++G + K L+
Sbjct: 26 PFRCQC-HLRVVQCSDLGL--EKVPKDLP-PDTALLDLQNNKIT-EIKDGDFKNLKNLHT 80
Query: 311 LDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSM 370
L + +N +S P LE L +S N L+ +P ++ +TL+ L V EN ++
Sbjct: 81 LILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVR 137
Query: 371 TSSFN 375
S FN
Sbjct: 138 KSVFN 142
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 522 LDLSCNELTGNVPSEIGDLQKIRGLNLSHNCLSGSIPRSFSNLQMIESLDLSNNRLSGQI 581
LDLS N L+ +++ K+ LNLS N L ++ +L + +LDL+NN + +
Sbjct: 39 LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--DLESLSTLRTLDLNNNYVQELL 96
Query: 582 PAQLIELNFLSNFNVSYNNLSGLIPDKGQ 610
IE + + NN+S + +GQ
Sbjct: 97 VGPSIE-----TLHAANNNISRVSCSRGQ 120
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 9/125 (7%)
Query: 252 PFLTGCISLWFLDLSDNNFYGQFFSKDLNLTQMEFLYLENNKFSGKIEEGLLNSTK-LYQ 310
PF C L + SD + KDL L L+NNK + +I++G + K L+
Sbjct: 26 PFRCQC-HLRVVQCSDLGL--EKVPKDLP-PDTALLDLQNNKIT-EIKDGDFKNLKNLHT 80
Query: 311 LDISHNFLSGHIPHWMGNFSNLEILLMSNNCLEGNIPVQLLNHRTLKLLSVSENYLSGSM 370
L + +N +S P LE L +S N L+ +P ++ +TL+ L V EN ++
Sbjct: 81 LILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVR 137
Query: 371 TSSFN 375
S FN
Sbjct: 138 KSVFN 142
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 356 LKLLSVSENYLSGSMTSSFN-LSSLKHLYVQKNALSGPIPDMLFRSSKLMTLDLRGNNLE 414
L+ L +S N+ SF+ LSSLK L+V + +S + + L+ L+L NNL
Sbjct: 220 LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279
Query: 415 GQIPDQICQLRRLGMMDLSHNRFN 438
D LR L + L HN +N
Sbjct: 280 SLPHDLFTPLRYLVELHLHHNPWN 303
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 537 IGDLQKIRGLNLSHNCL-SGSIPRSFSNLQMIESLDLSNNRL 577
IG L ++ LN++HN + S +P FSNL + +DLS N +
Sbjct: 119 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 160
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,551,080
Number of Sequences: 62578
Number of extensions: 874077
Number of successful extensions: 2552
Number of sequences better than 100.0: 93
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 1765
Number of HSP's gapped (non-prelim): 410
length of query: 700
length of database: 14,973,337
effective HSP length: 106
effective length of query: 594
effective length of database: 8,340,069
effective search space: 4954000986
effective search space used: 4954000986
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)